Query 007468
Match_columns 602
No_of_seqs 406 out of 2752
Neff 8.0
Searched_HMMs 29240
Date Tue Mar 26 02:35:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007468.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007468hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zgk_A Kelch-like ECH-associat 100.0 3.6E-46 1.2E-50 385.4 31.9 291 63-505 9-299 (308)
2 3ii7_A Kelch-like protein 7; p 100.0 2E-44 6.7E-49 371.4 32.3 273 81-504 11-283 (306)
3 2xn4_A Kelch-like protein 2; s 100.0 3.2E-44 1.1E-48 369.2 33.3 272 81-503 15-287 (302)
4 2uvk_A YJHT; unknown function, 100.0 2.8E-44 9.7E-49 378.3 33.4 306 61-503 2-352 (357)
5 2vpj_A Kelch-like protein 12; 100.0 7.7E-44 2.6E-48 365.9 33.4 273 81-504 14-289 (301)
6 4asc_A Kelch repeat and BTB do 100.0 5.6E-44 1.9E-48 370.0 31.0 279 81-503 4-287 (315)
7 2woz_A Kelch repeat and BTB do 100.0 1.4E-43 4.9E-48 367.4 30.0 286 66-502 6-296 (318)
8 4asc_A Kelch repeat and BTB do 100.0 7.6E-43 2.6E-47 361.4 31.2 252 63-346 30-283 (315)
9 2xn4_A Kelch-like protein 2; s 100.0 7.7E-42 2.6E-46 351.3 34.7 240 61-347 44-283 (302)
10 2woz_A Kelch repeat and BTB do 100.0 2E-42 6.8E-47 358.8 29.8 250 64-346 42-293 (318)
11 3ii7_A Kelch-like protein 7; p 100.0 1.1E-41 3.7E-46 350.9 34.6 244 60-348 37-280 (306)
12 1zgk_A Kelch-like ECH-associat 100.0 1.5E-41 5.1E-46 350.8 35.7 244 60-348 52-295 (308)
13 2vpj_A Kelch-like protein 12; 100.0 3E-40 1E-44 339.1 33.9 239 61-348 45-286 (301)
14 2zwa_A Leucine carboxyl methyl 100.0 8.3E-39 2.8E-43 366.1 30.7 243 63-347 383-642 (695)
15 2uvk_A YJHT; unknown function, 100.0 2.8E-36 9.5E-41 317.3 29.9 266 59-349 45-351 (357)
16 2zwa_A Leucine carboxyl methyl 100.0 1.1E-33 3.6E-38 323.8 25.1 241 120-499 384-641 (695)
17 1k3i_A Galactose oxidase precu 100.0 3E-32 1E-36 310.3 19.1 309 66-506 183-510 (656)
18 1k3i_A Galactose oxidase precu 100.0 8.8E-31 3E-35 298.2 19.6 259 63-348 235-505 (656)
19 3dsm_A Uncharacterized protein 98.0 0.0033 1.1E-07 64.1 26.7 208 67-343 42-256 (328)
20 3mbr_X Glutamine cyclotransfer 97.9 0.0009 3.1E-08 65.6 20.2 163 123-343 19-182 (243)
21 3dsm_A Uncharacterized protein 97.9 0.0036 1.2E-07 63.8 24.9 194 100-344 16-216 (328)
22 3mbr_X Glutamine cyclotransfer 97.8 0.0055 1.9E-07 60.0 24.3 196 64-315 16-224 (243)
23 3q7m_A Lipoprotein YFGL, BAMB; 97.8 0.023 7.8E-07 58.5 29.7 185 81-342 103-298 (376)
24 3nol_A Glutamine cyclotransfer 97.7 0.0069 2.3E-07 59.9 23.2 190 70-315 44-245 (262)
25 2iwa_A Glutamine cyclotransfer 97.7 0.016 5.6E-07 57.5 25.0 202 70-340 22-237 (266)
26 3q7m_A Lipoprotein YFGL, BAMB; 97.6 0.023 8E-07 58.4 27.2 193 81-345 53-265 (376)
27 3nok_A Glutaminyl cyclase; bet 97.5 0.0086 2.9E-07 59.3 20.1 187 70-315 56-255 (268)
28 3nol_A Glutamine cyclotransfer 97.4 0.0041 1.4E-07 61.5 16.5 161 126-344 44-205 (262)
29 2iwa_A Glutamine cyclotransfer 97.2 0.025 8.6E-07 56.1 20.1 160 127-343 23-184 (266)
30 2qc5_A Streptogramin B lactona 97.0 0.16 5.6E-06 49.4 24.0 199 71-347 22-224 (300)
31 1l0q_A Surface layer protein; 97.0 0.017 6E-07 59.2 17.3 185 82-345 2-194 (391)
32 3vgz_A Uncharacterized protein 97.0 0.37 1.3E-05 48.0 28.7 210 72-345 44-267 (353)
33 4ery_A WD repeat-containing pr 96.9 0.091 3.1E-06 52.0 21.3 194 74-342 71-270 (312)
34 3nok_A Glutaminyl cyclase; bet 96.9 0.025 8.6E-07 55.9 16.5 157 126-343 56-213 (268)
35 1l0q_A Surface layer protein; 96.9 0.055 1.9E-06 55.4 20.2 195 72-343 35-236 (391)
36 2z2n_A Virginiamycin B lyase; 96.9 0.16 5.4E-06 49.5 22.5 191 72-341 102-296 (299)
37 2z2n_A Virginiamycin B lyase; 96.9 0.34 1.2E-05 47.0 24.5 197 72-347 18-219 (299)
38 1gxr_A ESG1, transducin-like e 96.9 0.063 2.1E-06 53.2 19.2 194 73-344 102-300 (337)
39 1k8k_C P40, ARP2/3 complex 41 96.8 0.28 9.4E-06 49.3 24.0 148 73-257 13-165 (372)
40 2hqs_A Protein TOLB; TOLB, PAL 96.8 0.089 3.1E-06 55.2 20.3 206 74-348 184-395 (415)
41 3jrp_A Fusion protein of prote 96.7 0.049 1.7E-06 55.0 17.4 191 81-341 22-241 (379)
42 2ojh_A Uncharacterized protein 96.7 0.089 3E-06 50.7 18.3 215 72-348 45-266 (297)
43 1q7f_A NHL, brain tumor CG1071 96.7 0.53 1.8E-05 45.7 24.7 206 72-347 33-245 (286)
44 3g4e_A Regucalcin; six bladed 96.6 0.43 1.5E-05 47.2 23.2 209 69-344 13-233 (297)
45 1p22_A F-BOX/WD-repeat protein 96.5 0.19 6.4E-06 52.6 21.1 185 81-342 142-327 (435)
46 3vgz_A Uncharacterized protein 96.5 0.41 1.4E-05 47.7 22.7 184 101-345 111-308 (353)
47 3bws_A Protein LP49; two-domai 96.5 0.34 1.2E-05 50.1 22.8 208 81-344 180-394 (433)
48 1pjx_A Dfpase, DIISOPROPYLFLUO 96.5 0.42 1.5E-05 46.9 22.2 135 72-224 21-167 (314)
49 4ery_A WD repeat-containing pr 96.5 0.28 9.7E-06 48.4 20.8 192 73-342 28-225 (312)
50 2qc5_A Streptogramin B lactona 96.4 0.7 2.4E-05 44.7 23.3 199 72-348 65-267 (300)
51 3jrp_A Fusion protein of prote 96.3 0.18 6.3E-06 50.6 18.5 199 82-349 69-297 (379)
52 2ojh_A Uncharacterized protein 96.2 0.42 1.4E-05 45.8 20.1 186 99-345 20-211 (297)
53 2vdu_B TRNA (guanine-N(7)-)-me 96.2 0.31 1.1E-05 51.2 20.4 161 73-286 107-276 (450)
54 3v9f_A Two-component system se 96.1 0.4 1.4E-05 54.6 22.3 188 102-348 384-576 (781)
55 3bws_A Protein LP49; two-domai 96.1 0.37 1.3E-05 49.8 20.0 204 73-344 127-338 (433)
56 1rwi_B Serine/threonine-protei 96.1 0.5 1.7E-05 45.3 19.6 194 70-341 25-223 (270)
57 1kb0_A Quinohemoprotein alcoho 96.0 0.73 2.5E-05 51.8 23.5 120 81-226 77-209 (677)
58 1qhu_A Protein (hemopexin); be 96.0 0.54 1.8E-05 50.2 21.0 59 134-219 158-216 (460)
59 3dwl_C Actin-related protein 2 96.0 0.025 8.4E-07 57.8 10.2 141 81-257 22-169 (377)
60 3v7d_B Cell division control p 96.0 1.8 6.2E-05 45.1 25.2 133 156-342 290-423 (464)
61 1r5m_A SIR4-interacting protei 95.9 1.7 5.9E-05 44.0 24.8 193 73-342 113-321 (425)
62 3v9f_A Two-component system se 95.9 0.36 1.2E-05 55.1 20.4 180 101-340 469-656 (781)
63 2ovr_B FBW7, F-BOX/WD repeat p 95.9 0.68 2.3E-05 48.3 21.1 183 81-342 128-310 (445)
64 3ei3_B DNA damage-binding prot 95.9 0.38 1.3E-05 49.0 18.6 196 71-342 76-284 (383)
65 1gxr_A ESG1, transducin-like e 95.8 0.27 9.3E-06 48.4 17.0 193 73-342 56-257 (337)
66 4aez_A CDC20, WD repeat-contai 95.8 0.35 1.2E-05 49.9 18.4 180 101-347 156-343 (401)
67 3jro_A Fusion protein of prote 95.8 0.088 3E-06 60.0 14.9 106 81-219 20-133 (753)
68 1k8k_C P40, ARP2/3 complex 41 95.8 0.52 1.8E-05 47.2 19.4 203 73-348 57-284 (372)
69 1ri6_A Putative isomerase YBHE 95.8 0.7 2.4E-05 45.5 20.1 151 156-348 151-318 (343)
70 3fm0_A Protein CIAO1; WDR39,SG 95.8 0.3 1E-05 49.4 17.5 189 72-316 20-215 (345)
71 2ovr_B FBW7, F-BOX/WD repeat p 95.8 0.99 3.4E-05 47.0 22.1 154 133-340 287-442 (445)
72 4a2l_A BT_4663, two-component 95.8 0.86 2.9E-05 52.0 23.1 187 101-348 427-622 (795)
73 2dg1_A DRP35, lactonase; beta 95.8 0.34 1.2E-05 48.3 17.5 129 72-225 48-178 (333)
74 2ad6_A Methanol dehydrogenase 95.8 0.81 2.8E-05 50.3 21.8 119 81-225 62-194 (571)
75 3mkq_A Coatomer beta'-subunit; 95.7 0.55 1.9E-05 53.1 20.9 194 73-342 18-219 (814)
76 1nir_A Nitrite reductase; hemo 95.7 1.2 4.3E-05 48.4 22.8 102 81-221 148-260 (543)
77 4e54_B DNA damage-binding prot 95.6 0.079 2.7E-06 55.7 12.6 115 73-219 124-241 (435)
78 3zwl_B Eukaryotic translation 95.6 0.84 2.9E-05 45.4 19.9 205 73-345 37-254 (369)
79 2hqs_A Protein TOLB; TOLB, PAL 95.6 0.69 2.4E-05 48.3 19.9 185 101-346 159-350 (415)
80 1r5m_A SIR4-interacting protei 95.6 0.37 1.3E-05 49.1 17.4 177 101-341 171-362 (425)
81 3azo_A Aminopeptidase; POP fam 95.6 0.53 1.8E-05 52.1 19.8 208 101-346 102-331 (662)
82 1nir_A Nitrite reductase; hemo 95.6 0.62 2.1E-05 50.8 19.9 149 156-348 248-415 (543)
83 2aq5_A Coronin-1A; WD40 repeat 95.5 0.75 2.6E-05 47.2 19.6 200 83-348 145-350 (402)
84 3hfq_A Uncharacterized protein 95.5 0.35 1.2E-05 48.5 16.5 149 102-287 19-178 (347)
85 4a2l_A BT_4663, two-component 95.5 0.37 1.3E-05 55.1 18.4 179 101-340 471-659 (795)
86 3ow8_A WD repeat-containing pr 95.5 1.1 3.8E-05 44.7 20.0 163 101-316 144-311 (321)
87 1qhu_A Protein (hemopexin); be 95.5 1.2 4E-05 47.6 20.8 59 81-166 158-216 (460)
88 1rwi_B Serine/threonine-protei 95.4 1 3.5E-05 43.0 19.0 191 72-340 70-264 (270)
89 3vl1_A 26S proteasome regulato 95.4 1.8 6E-05 44.3 22.0 104 189-340 258-365 (420)
90 4aez_A CDC20, WD repeat-contai 95.4 2.1 7.3E-05 43.8 22.6 181 101-344 113-297 (401)
91 2z3z_A Dipeptidyl aminopeptida 95.4 1 3.4E-05 50.2 21.4 194 100-342 234-437 (706)
92 3v7d_B Cell division control p 95.4 2.2 7.4E-05 44.4 22.9 174 81-316 279-453 (464)
93 1jmx_B Amine dehydrogenase; ox 95.3 1.9 6.5E-05 42.5 21.3 68 81-170 10-79 (349)
94 1vyh_C Platelet-activating fac 95.3 0.99 3.4E-05 46.8 19.8 150 74-284 114-268 (410)
95 3vl1_A 26S proteasome regulato 95.3 1.9 6.5E-05 44.0 21.7 104 81-220 108-214 (420)
96 1got_B GT-beta; complex (GTP-b 95.3 2.7 9.3E-05 42.0 23.3 135 156-342 164-303 (340)
97 3azo_A Aminopeptidase; POP fam 95.3 0.66 2.3E-05 51.3 19.2 225 73-348 134-377 (662)
98 4gqb_B Methylosome protein 50; 95.3 1.3 4.4E-05 44.9 20.0 179 74-317 133-322 (344)
99 4g56_B MGC81050 protein; prote 95.2 0.66 2.2E-05 47.2 17.7 189 74-340 145-343 (357)
100 1q7f_A NHL, brain tumor CG1071 95.2 2.4 8.1E-05 41.0 24.7 177 81-313 88-268 (286)
101 2vdu_B TRNA (guanine-N(7)-)-me 95.2 1.4 4.8E-05 46.0 20.7 65 135-221 210-274 (450)
102 1p22_A F-BOX/WD-repeat protein 95.2 1.1 3.6E-05 46.8 19.6 172 101-340 193-365 (435)
103 3ow8_A WD repeat-containing pr 95.1 1.5 5.2E-05 43.7 19.9 174 101-342 102-281 (321)
104 3e5z_A Putative gluconolactona 95.1 1.1 3.9E-05 43.7 18.5 209 70-348 29-254 (296)
105 3u4y_A Uncharacterized protein 95.1 0.78 2.7E-05 45.3 17.4 131 81-253 9-147 (331)
106 3mkq_A Coatomer beta'-subunit; 95.0 0.62 2.1E-05 52.6 18.2 194 73-342 60-261 (814)
107 2hes_X YDR267CP; beta-propelle 95.0 0.56 1.9E-05 47.0 16.1 184 81-316 118-318 (330)
108 3fvz_A Peptidyl-glycine alpha- 95.0 3.3 0.00011 41.2 26.9 199 101-345 69-282 (329)
109 1kv9_A Type II quinohemoprotei 94.9 6.1 0.00021 44.1 26.4 119 81-225 66-196 (668)
110 3iuj_A Prolyl endopeptidase; h 94.9 3.3 0.00011 46.4 23.6 196 101-346 155-365 (693)
111 3no2_A Uncharacterized protein 94.8 1.7 5.9E-05 42.6 18.9 185 81-342 4-197 (276)
112 2xbg_A YCF48-like protein; pho 94.8 3.7 0.00013 41.2 25.8 174 81-314 46-223 (327)
113 3scy_A Hypothetical bacterial 94.8 3 0.0001 41.8 21.1 62 274-348 235-301 (361)
114 2p4o_A Hypothetical protein; p 94.8 3.5 0.00012 40.7 23.6 117 67-219 30-148 (306)
115 4gga_A P55CDC, cell division c 94.8 1.3 4.5E-05 45.8 18.7 50 274-341 303-354 (420)
116 3scy_A Hypothetical bacterial 94.8 0.86 2.9E-05 45.9 16.9 97 102-218 30-129 (361)
117 1ri6_A Putative isomerase YBHE 94.7 0.51 1.7E-05 46.6 14.8 186 101-346 15-217 (343)
118 1w6s_A Methanol dehydrogenase 94.7 2.8 9.4E-05 46.4 21.8 121 81-226 62-201 (599)
119 2xdw_A Prolyl endopeptidase; a 94.7 3.5 0.00012 46.1 23.2 197 102-342 152-370 (710)
120 2aq5_A Coronin-1A; WD40 repeat 94.6 0.95 3.3E-05 46.4 17.1 152 136-348 145-309 (402)
121 3e5z_A Putative gluconolactona 94.6 2 6.7E-05 41.9 18.7 200 72-342 72-288 (296)
122 3u4y_A Uncharacterized protein 94.6 1.2 4.2E-05 43.8 17.3 200 73-348 44-260 (331)
123 1got_B GT-beta; complex (GTP-b 94.4 3.7 0.00013 41.0 20.8 188 81-342 66-259 (340)
124 4aow_A Guanine nucleotide-bind 94.4 3.1 0.00011 40.7 19.8 102 191-342 186-288 (340)
125 3f3f_A Nucleoporin SEH1; struc 94.4 4 0.00014 39.6 21.8 111 74-219 17-144 (351)
126 1pjx_A Dfpase, DIISOPROPYLFLUO 94.4 2.5 8.5E-05 41.2 18.9 204 72-341 74-300 (314)
127 4gqb_B Methylosome protein 50; 94.3 1.2 4.3E-05 45.1 16.9 145 134-342 138-291 (344)
128 3fm0_A Protein CIAO1; WDR39,SG 94.3 1.2 4.1E-05 44.8 16.7 146 73-257 66-217 (345)
129 1yiq_A Quinohemoprotein alcoho 94.2 8.8 0.0003 42.9 27.2 118 81-224 70-200 (689)
130 2pbi_B Guanine nucleotide-bind 94.2 2.5 8.7E-05 42.6 19.1 162 101-316 176-347 (354)
131 3iz6_a 40S ribosomal protein R 94.2 5.5 0.00019 40.4 21.9 175 101-317 180-366 (380)
132 1npe_A Nidogen, entactin; glyc 94.2 4.2 0.00014 39.0 25.1 198 72-344 39-242 (267)
133 4g56_B MGC81050 protein; prote 94.2 0.4 1.4E-05 48.9 12.8 106 189-341 150-259 (357)
134 2hes_X YDR267CP; beta-propelle 94.1 1.7 5.9E-05 43.3 17.4 158 134-348 118-288 (330)
135 1pby_B Quinohemoprotein amine 94.1 2.4 8.1E-05 41.5 18.2 148 101-287 11-169 (337)
136 1qks_A Cytochrome CD1 nitrite 94.1 2.3 7.9E-05 46.6 19.4 106 208-348 319-434 (567)
137 2ynn_A Coatomer subunit beta'; 94.0 2.7 9.2E-05 41.2 18.3 143 73-257 18-164 (304)
138 3zwl_B Eukaryotic translation 93.9 2.7 9.2E-05 41.5 18.2 181 81-316 85-280 (369)
139 4aow_A Guanine nucleotide-bind 93.8 1.4 4.8E-05 43.3 15.8 135 157-341 196-338 (340)
140 1qks_A Cytochrome CD1 nitrite 93.8 6.9 0.00024 42.8 22.6 191 81-342 166-375 (567)
141 3jro_A Fusion protein of prote 93.7 0.49 1.7E-05 53.8 13.6 199 82-348 67-294 (753)
142 1erj_A Transcriptional repress 93.7 2.8 9.6E-05 42.9 18.4 110 73-221 128-241 (393)
143 2pbi_B Guanine nucleotide-bind 93.7 4.1 0.00014 41.0 19.4 135 156-342 176-317 (354)
144 3pe7_A Oligogalacturonate lyas 93.6 4.4 0.00015 40.8 19.5 111 156-289 168-281 (388)
145 1sq9_A Antiviral protein SKI8; 93.5 2.2 7.5E-05 43.1 17.1 199 83-342 27-269 (397)
146 1erj_A Transcriptional repress 93.4 6.4 0.00022 40.1 20.6 147 134-341 134-288 (393)
147 3hfq_A Uncharacterized protein 93.4 2.6 8.8E-05 41.9 17.1 172 71-289 143-327 (347)
148 1vyh_C Platelet-activating fac 93.4 2.8 9.7E-05 43.2 17.9 64 134-221 203-268 (410)
149 4a11_B DNA excision repair pro 93.4 2.2 7.6E-05 42.9 16.8 50 274-341 316-366 (408)
150 2bkl_A Prolyl endopeptidase; m 93.2 8.7 0.0003 42.7 22.8 195 101-340 147-351 (695)
151 1sq9_A Antiviral protein SKI8; 93.2 1.6 5.6E-05 44.1 15.5 69 134-220 197-269 (397)
152 2ghs_A AGR_C_1268P; regucalcin 93.1 7.5 0.00026 38.6 23.4 121 71-224 51-174 (326)
153 1yfq_A Cell cycle arrest prote 93.1 4.7 0.00016 39.5 18.4 109 73-218 16-131 (342)
154 2ynn_A Coatomer subunit beta'; 93.0 3.2 0.00011 40.6 17.0 188 81-342 66-261 (304)
155 1yr2_A Prolyl oligopeptidase; 93.0 5.8 0.0002 44.6 21.1 193 101-341 189-396 (741)
156 3fvz_A Peptidyl-glycine alpha- 93.0 7.7 0.00026 38.5 24.3 210 72-339 94-321 (329)
157 4gga_A P55CDC, cell division c 93.0 3.2 0.00011 42.8 17.6 94 101-220 125-220 (420)
158 2xdw_A Prolyl endopeptidase; a 93.0 12 0.00042 41.6 23.5 151 155-348 258-424 (710)
159 2pm7_B Protein transport prote 92.9 1.6 5.4E-05 42.8 14.3 111 74-219 15-133 (297)
160 1pby_B Quinohemoprotein amine 92.9 7.4 0.00025 37.8 19.4 90 210-343 220-313 (337)
161 3odt_A Protein DOA1; ubiquitin 92.8 7 0.00024 37.5 20.0 105 189-345 195-301 (313)
162 4a11_B DNA excision repair pro 92.8 3.2 0.00011 41.8 16.9 103 82-219 112-219 (408)
163 4ggc_A P55CDC, cell division c 92.8 4.8 0.00016 38.9 17.7 31 74-115 73-103 (318)
164 3i2n_A WD repeat-containing pr 92.8 2.7 9.2E-05 41.5 16.1 196 73-340 23-243 (357)
165 1pex_A Collagenase-3, MMP-13; 92.7 3.5 0.00012 38.8 15.7 148 81-286 33-197 (207)
166 2z3z_A Dipeptidyl aminopeptida 92.6 10 0.00035 41.8 22.3 112 208-347 234-351 (706)
167 3odt_A Protein DOA1; ubiquitin 92.6 4.6 0.00016 38.8 17.3 186 81-342 28-216 (313)
168 3ott_A Two-component system se 92.6 9.9 0.00034 42.8 22.2 140 102-288 83-227 (758)
169 3g4e_A Regucalcin; six bladed 92.6 8.2 0.00028 37.6 20.7 176 101-315 73-262 (297)
170 3dm0_A Maltose-binding peripla 92.5 5.7 0.00019 44.1 19.8 103 191-343 532-635 (694)
171 2xbg_A YCF48-like protein; pho 92.3 10 0.00034 37.9 22.1 156 107-313 21-180 (327)
172 1flg_A Protein (quinoprotein e 92.2 13 0.00044 40.7 21.8 115 81-223 68-200 (582)
173 4e54_B DNA damage-binding prot 92.1 1.4 4.9E-05 45.8 13.6 92 102-219 188-283 (435)
174 3no2_A Uncharacterized protein 92.1 5.5 0.00019 38.9 17.1 181 70-313 38-230 (276)
175 3c5m_A Oligogalacturonate lyas 92.1 2.3 7.8E-05 42.9 14.7 212 101-348 168-392 (396)
176 2p4o_A Hypothetical protein; p 92.0 9.9 0.00034 37.3 20.6 139 102-287 96-247 (306)
177 3f3f_A Nucleoporin SEH1; struc 91.9 9.4 0.00032 36.8 21.2 29 306-348 317-346 (351)
178 3sfz_A APAF-1, apoptotic pepti 91.9 1 3.5E-05 53.8 13.5 187 81-342 972-1160(1249)
179 1pgu_A Actin interacting prote 91.8 3.4 0.00012 44.4 16.6 28 72-111 22-49 (615)
180 2bkl_A Prolyl endopeptidase; m 91.8 5.3 0.00018 44.5 18.5 151 155-348 251-405 (695)
181 1pgu_A Actin interacting prote 91.8 4.6 0.00016 43.3 17.6 150 137-340 175-328 (615)
182 1kb0_A Quinohemoprotein alcoho 91.8 7.3 0.00025 43.5 19.5 123 130-288 73-208 (677)
183 3ott_A Two-component system se 91.8 7.8 0.00027 43.6 20.0 111 80-224 481-592 (758)
184 2ecf_A Dipeptidyl peptidase IV 91.7 3 0.0001 46.5 16.4 127 69-227 37-190 (741)
185 3gre_A Serine/threonine-protei 91.7 10 0.00036 38.7 19.6 152 134-342 181-361 (437)
186 2pm9_A Protein WEB1, protein t 91.7 3.2 0.00011 42.1 15.4 206 73-343 72-297 (416)
187 3bg1_A Protein SEC13 homolog; 91.6 2.9 0.0001 41.3 14.6 29 306-348 273-302 (316)
188 3k26_A Polycomb protein EED; W 91.5 9.4 0.00032 37.5 18.4 105 82-219 85-193 (366)
189 3bg1_A Protein SEC13 homolog; 91.4 1.6 5.5E-05 43.3 12.3 113 81-225 24-144 (316)
190 2pm7_B Protein transport prote 91.2 6.6 0.00023 38.2 16.7 72 246-348 219-294 (297)
191 2xyi_A Probable histone-bindin 91.2 1.7 5.7E-05 45.3 12.8 101 189-340 243-353 (430)
192 3lrv_A PRE-mRNA-splicing facto 91.2 5.1 0.00017 39.9 16.1 104 189-341 138-245 (343)
193 3hrp_A Uncharacterized protein 91.2 15 0.00053 37.9 24.5 208 72-348 134-362 (409)
194 4d9s_A UVB-resistance protein 91.2 6.2 0.00021 41.0 17.1 17 298-314 338-355 (406)
195 3dr2_A Exported gluconolactona 91.1 10 0.00035 37.0 18.0 168 70-283 46-226 (305)
196 2dg1_A DRP35, lactonase; beta 91.1 4.8 0.00016 39.7 15.6 155 134-340 55-213 (333)
197 1yiq_A Quinohemoprotein alcoho 91.0 17 0.00057 40.7 21.5 122 130-287 66-200 (689)
198 2pm9_A Protein WEB1, protein t 90.9 5.4 0.00018 40.3 16.2 150 135-341 178-338 (416)
199 1kv9_A Type II quinohemoprotei 90.8 16 0.00053 40.7 21.0 124 129-288 61-196 (668)
200 3b7f_A Glycosyl hydrolase, BNR 90.8 10 0.00034 38.9 18.3 194 102-348 32-270 (394)
201 3k26_A Polycomb protein EED; W 90.8 3.5 0.00012 40.7 14.3 139 101-282 44-193 (366)
202 3dwl_C Actin-related protein 2 90.8 0.32 1.1E-05 49.2 6.5 151 134-341 22-178 (377)
203 3i2n_A WD repeat-containing pr 90.8 2.9 9.9E-05 41.2 13.6 105 81-218 128-243 (357)
204 1yfq_A Cell cycle arrest prote 90.6 6.8 0.00023 38.3 16.1 143 73-257 61-217 (342)
205 4h5i_A Guanine nucleotide-exch 90.6 16 0.00053 36.9 19.6 184 101-340 157-343 (365)
206 2ad6_A Methanol dehydrogenase 90.1 18 0.00062 39.4 20.3 125 129-288 57-194 (571)
207 3b7f_A Glycosyl hydrolase, BNR 90.0 18 0.00063 36.8 20.2 195 70-312 56-296 (394)
208 2fp8_A Strictosidine synthase; 89.9 16 0.00054 36.0 20.0 173 101-314 40-247 (322)
209 3sfz_A APAF-1, apoptotic pepti 89.7 7.3 0.00025 46.3 18.1 149 74-283 621-776 (1249)
210 3pe7_A Oligogalacturonate lyas 89.7 4.3 0.00015 40.8 14.1 111 101-227 168-282 (388)
211 1itv_A MMP9; adaptive molecula 89.4 13 0.00046 34.4 16.0 145 81-283 16-176 (195)
212 1yr2_A Prolyl oligopeptidase; 89.4 13 0.00044 41.7 19.0 150 100-289 293-449 (741)
213 3mmy_A MRNA export factor; mRN 89.1 17 0.00059 35.4 17.9 105 82-220 54-162 (368)
214 1jmx_B Amine dehydrogenase; ox 89.1 2.9 9.9E-05 41.1 12.0 68 134-223 10-79 (349)
215 1pex_A Collagenase-3, MMP-13; 89.0 3.9 0.00013 38.6 12.0 105 81-222 79-196 (207)
216 3iz6_a 40S ribosomal protein R 88.9 12 0.0004 37.9 16.8 142 156-343 180-332 (380)
217 3hxj_A Pyrrolo-quinoline quino 88.8 18 0.00061 35.1 17.9 90 101-224 117-211 (330)
218 3ju4_A Endo-N-acetylneuraminid 88.6 24 0.00084 36.4 19.7 218 110-339 269-513 (670)
219 4h5i_A Guanine nucleotide-exch 88.5 15 0.00053 36.9 17.3 131 102-257 198-335 (365)
220 2ymu_A WD-40 repeat protein; u 87.9 28 0.00096 36.8 19.8 179 81-340 355-539 (577)
221 3mmy_A MRNA export factor; mRN 87.9 14 0.00046 36.2 16.1 53 245-317 284-337 (368)
222 3ei3_B DNA damage-binding prot 87.6 20 0.0007 35.7 17.5 144 136-340 87-236 (383)
223 1xfd_A DIP, dipeptidyl aminope 87.5 7.2 0.00025 43.2 15.1 113 102-227 38-152 (723)
224 3dm0_A Maltose-binding peripla 87.0 23 0.0008 39.0 19.0 147 134-342 441-594 (694)
225 4d9s_A UVB-resistance protein 87.0 26 0.00089 36.1 18.2 17 298-314 286-303 (406)
226 3iuj_A Prolyl endopeptidase; h 86.8 32 0.0011 38.1 20.0 147 156-348 259-413 (693)
227 2xyi_A Probable histone-bindin 86.8 4.1 0.00014 42.2 11.9 63 134-218 243-309 (430)
228 3o4h_A Acylamino-acid-releasin 86.7 12 0.0004 40.4 15.9 96 103-222 134-231 (582)
229 1w6s_A Methanol dehydrogenase 86.6 27 0.00091 38.4 18.7 125 129-288 57-200 (599)
230 2ecf_A Dipeptidyl peptidase IV 86.4 15 0.00051 40.7 17.0 108 102-225 264-375 (741)
231 3kci_A Probable E3 ubiquitin-p 86.4 15 0.0005 37.8 15.8 19 237-255 274-293 (389)
232 3c5m_A Oligogalacturonate lyas 86.3 9.9 0.00034 38.0 14.2 113 101-227 216-338 (396)
233 3o4h_A Acylamino-acid-releasin 85.5 42 0.0014 35.9 19.6 138 156-344 90-231 (582)
234 2fp8_A Strictosidine synthase; 85.4 29 0.00099 34.0 18.4 216 72-340 83-313 (322)
235 3dw8_B Serine/threonine-protei 84.5 25 0.00085 35.7 16.5 30 72-112 32-61 (447)
236 1gen_A Gelatinase A; hydrolase 84.4 22 0.00075 33.6 14.6 102 81-219 40-154 (218)
237 2hz6_A Endoplasmic reticulum t 84.3 0.38 1.3E-05 49.6 2.2 93 101-223 19-118 (369)
238 1itv_A MMP9; adaptive molecula 83.5 8.4 0.00029 35.8 11.0 104 81-221 64-177 (195)
239 4ggc_A P55CDC, cell division c 82.7 34 0.0012 32.6 19.8 126 101-257 45-173 (318)
240 2ghs_A AGR_C_1268P; regucalcin 82.5 39 0.0013 33.2 20.5 96 102-217 110-209 (326)
241 3frx_A Guanine nucleotide-bind 82.2 39 0.0013 32.9 19.6 144 81-283 76-229 (319)
242 3gre_A Serine/threonine-protei 82.1 32 0.0011 34.9 16.2 153 81-283 181-361 (437)
243 2xzm_R RACK1; ribosome, transl 81.7 42 0.0014 33.0 18.8 63 81-166 87-150 (343)
244 2xzm_R RACK1; ribosome, transl 81.3 43 0.0015 32.9 18.2 61 134-218 87-149 (343)
245 3c7x_A Matrix metalloproteinas 81.1 33 0.0011 31.7 14.2 142 81-283 15-177 (196)
246 3dr2_A Exported gluconolactona 80.8 24 0.00084 34.2 14.1 103 156-288 169-274 (305)
247 1ijq_A LDL receptor, low-densi 80.6 46 0.0016 32.7 26.1 174 101-340 10-195 (316)
248 3hxj_A Pyrrolo-quinoline quino 80.6 37 0.0013 32.7 15.4 126 103-287 80-211 (330)
249 2mad_H Methylamine dehydrogena 80.4 53 0.0018 33.3 24.7 74 245-344 278-354 (373)
250 2p9w_A MAL S 1 allergenic prot 80.1 53 0.0018 33.1 21.6 200 101-348 35-271 (334)
251 3ba0_A Macrophage metalloelast 80.0 25 0.00087 36.0 14.1 109 134-287 236-356 (365)
252 2oaj_A Protein SNI1; WD40 repe 80.0 66 0.0022 37.0 19.3 110 72-221 21-132 (902)
253 3lrv_A PRE-mRNA-splicing facto 79.8 48 0.0016 32.5 18.3 103 82-220 139-246 (343)
254 1nr0_A Actin interacting prote 79.3 74 0.0025 34.3 21.5 181 101-344 170-359 (611)
255 1npe_A Nidogen, entactin; glyc 79.1 43 0.0015 31.5 21.9 159 72-287 82-244 (267)
256 3kci_A Probable E3 ubiquitin-p 79.0 41 0.0014 34.4 15.6 17 181-197 168-185 (389)
257 3oyo_A Hemopexin fold protein 78.9 11 0.00037 35.9 10.2 62 189-280 127-197 (225)
258 3hrp_A Uncharacterized protein 78.8 62 0.0021 33.2 18.4 150 134-341 141-299 (409)
259 3dw8_B Serine/threonine-protei 78.2 60 0.0021 32.7 19.0 28 245-288 353-380 (447)
260 2ece_A 462AA long hypothetical 77.8 75 0.0026 33.5 18.7 124 81-219 95-238 (462)
261 1hxn_A Hemopexin, HPX; heme, b 77.1 33 0.0011 32.4 12.9 101 81-218 28-144 (219)
262 3frx_A Guanine nucleotide-bind 76.8 57 0.0019 31.7 19.2 51 157-220 177-229 (319)
263 1xfd_A DIP, dipeptidyl aminope 76.7 37 0.0013 37.2 15.5 88 72-173 64-151 (723)
264 1su3_A Interstitial collagenas 76.5 37 0.0013 35.8 14.4 148 81-286 272-437 (450)
265 1gen_A Gelatinase A; hydrolase 76.2 24 0.00081 33.3 11.7 105 81-220 87-204 (218)
266 1nr0_A Actin interacting prote 76.0 91 0.0031 33.6 18.5 153 81-287 201-361 (611)
267 2ymu_A WD-40 repeat protein; u 75.8 83 0.0028 33.1 21.8 171 102-343 285-460 (577)
268 2gop_A Trilobed protease; beta 75.5 62 0.0021 31.4 15.9 195 99-347 41-258 (347)
269 1n7d_A LDL receptor, low-densi 75.1 38 0.0013 37.8 14.9 150 134-343 464-617 (699)
270 3of7_A Regulator of chromosome 74.9 87 0.003 32.8 17.8 17 298-314 386-403 (473)
271 3ba0_A Macrophage metalloelast 74.4 35 0.0012 34.9 13.3 108 81-223 236-355 (365)
272 1su3_A Interstitial collagenas 74.2 74 0.0025 33.4 16.1 153 129-345 267-437 (450)
273 1k32_A Tricorn protease; prote 73.3 37 0.0013 39.6 14.9 148 101-288 317-468 (1045)
274 3m0c_C LDL receptor, low-densi 72.4 1.3E+02 0.0046 33.9 26.2 174 102-341 405-590 (791)
275 2gop_A Trilobed protease; beta 72.0 74 0.0025 30.8 18.2 107 100-226 151-259 (347)
276 2hz6_A Endoplasmic reticulum t 72.0 1.4 4.9E-05 45.2 2.0 53 156-223 19-75 (369)
277 3c7x_A Matrix metalloproteinas 71.8 37 0.0013 31.3 11.6 102 81-220 61-177 (196)
278 3ju4_A Endo-N-acetylneuraminid 71.5 99 0.0034 32.0 17.5 212 57-279 272-512 (670)
279 1ijq_A LDL receptor, low-densi 70.6 83 0.0028 30.8 26.4 201 70-343 31-241 (316)
280 2p9w_A MAL S 1 allergenic prot 69.5 98 0.0033 31.2 16.8 197 81-317 76-306 (334)
281 3m0c_C LDL receptor, low-densi 69.3 1.6E+02 0.0053 33.4 27.3 147 134-341 482-633 (791)
282 3v65_B Low-density lipoprotein 68.5 1.1E+02 0.0036 31.1 24.3 174 101-340 96-277 (386)
283 3v65_B Low-density lipoprotein 67.9 1.1E+02 0.0037 31.0 25.5 176 101-341 138-319 (386)
284 2xe4_A Oligopeptidase B; hydro 67.6 1.3E+02 0.0045 33.6 17.4 98 155-279 294-398 (751)
285 3oyo_A Hemopexin fold protein 67.5 50 0.0017 31.2 11.8 101 81-217 70-197 (225)
286 1k32_A Tricorn protease; prote 63.9 2.1E+02 0.0073 33.0 20.9 114 101-227 33-152 (1045)
287 1flg_A Protein (quinoprotein e 63.7 77 0.0026 34.4 14.0 74 129-224 63-144 (582)
288 3v64_C Agrin; beta propeller, 61.3 1.3E+02 0.0046 29.8 26.2 188 81-342 84-277 (349)
289 3lp9_A LS-24; SEED albumin, pl 60.9 8.9 0.00031 36.6 5.0 62 134-219 129-202 (227)
290 1z68_A Fibroblast activation p 59.1 64 0.0022 35.4 12.5 81 73-173 64-147 (719)
291 1jof_A Carboxy-CIS,CIS-muconat 59.0 1.4E+02 0.0048 29.4 17.6 16 101-116 167-183 (365)
292 2xe4_A Oligopeptidase B; hydro 58.5 1.8E+02 0.0063 32.3 16.3 98 100-216 294-398 (751)
293 4a5s_A Dipeptidyl peptidase 4 56.6 2.3E+02 0.008 31.1 18.1 42 75-118 68-109 (740)
294 3mvd_K Regulator of chromosome 56.1 1.8E+02 0.0061 29.6 20.0 19 237-255 303-322 (423)
295 1hxn_A Hemopexin, HPX; heme, b 54.7 1.4E+02 0.0048 27.9 13.4 59 133-217 27-89 (219)
296 3sjl_D Methylamine dehydrogena 52.5 1.1E+02 0.0038 31.4 12.0 125 134-285 44-173 (386)
297 3lp9_A LS-24; SEED albumin, pl 51.1 27 0.00094 33.1 6.7 20 189-219 129-148 (227)
298 3p5b_L Low density lipoprotein 50.3 2.2E+02 0.0074 28.9 26.2 175 101-341 92-278 (400)
299 3v64_C Agrin; beta propeller, 49.2 2.1E+02 0.0071 28.3 25.6 174 101-340 53-234 (349)
300 1ck7_A Protein (gelatinase A); 48.8 57 0.0019 36.0 9.5 101 81-219 453-567 (631)
301 2mad_H Methylamine dehydrogena 48.8 2.2E+02 0.0075 28.5 18.8 76 189-287 278-356 (373)
302 3of7_A Regulator of chromosome 48.7 2.5E+02 0.0084 29.2 14.5 18 70-89 76-93 (473)
303 2oiz_A Aromatic amine dehydrog 46.6 2.3E+02 0.0078 28.0 19.8 107 100-221 30-143 (361)
304 1ofz_A Fucose-specific lectin; 46.0 2.3E+02 0.008 28.0 15.7 125 104-251 90-228 (312)
305 2iu1_A EIF5, eukaryotic transl 46.0 7.4 0.00025 36.6 1.6 11 506-516 149-159 (208)
306 1z68_A Fibroblast activation p 45.6 3.2E+02 0.011 29.5 17.6 112 101-226 224-354 (719)
307 1a12_A RCC1, regulator of chro 44.9 2.6E+02 0.009 28.3 16.9 18 298-315 295-313 (413)
308 3mvd_K Regulator of chromosome 41.8 2.9E+02 0.01 28.0 18.1 18 298-315 303-321 (423)
309 1n7d_A LDL receptor, low-densi 41.6 1.4E+02 0.0047 33.2 11.6 140 101-285 475-618 (699)
310 1sqj_A OXG-RCBH, oligoxylogluc 39.9 4.4E+02 0.015 29.5 24.2 185 69-289 64-277 (789)
311 3k6s_A Integrin alpha-X; cell 39.5 4.9E+02 0.017 30.5 16.3 159 69-244 334-509 (1095)
312 4a0p_A LRP6, LRP-6, low-densit 38.0 4.3E+02 0.015 28.7 25.4 181 69-313 37-224 (628)
313 3sjl_D Methylamine dehydrogena 37.6 3.5E+02 0.012 27.6 20.8 74 245-344 291-367 (386)
314 1ofz_A Fucose-specific lectin; 37.1 3.2E+02 0.011 27.0 15.7 123 105-251 148-279 (312)
315 1hyw_A GPW, head-TO-tail joini 36.3 22 0.00077 27.0 2.7 27 574-600 39-65 (68)
316 3a0f_A Xyloglucanase; beta-pro 35.6 5E+02 0.017 28.8 21.7 185 71-289 77-292 (763)
317 4aco_A Centromere DNA-binding 33.8 8.7 0.0003 43.0 0.0 14 575-588 753-766 (956)
318 2be1_A Serine/threonine-protei 33.0 1.1E+02 0.0036 30.9 8.0 106 156-287 20-138 (339)
319 1ck7_A Protein (gelatinase A); 32.2 46 0.0016 36.7 5.5 62 134-219 548-616 (631)
320 4hvt_A Ritya.17583.B, post-pro 31.7 5.7E+02 0.019 28.3 15.0 153 156-348 269-437 (711)
321 3vu4_A KMHSV2; beta-propeller 31.4 3.7E+02 0.013 26.1 19.5 104 73-219 24-129 (355)
322 2oiz_A Aromatic amine dehydrog 30.8 3.9E+02 0.013 26.2 13.9 109 156-285 31-144 (361)
323 4hvt_A Ritya.17583.B, post-pro 30.2 6E+02 0.02 28.1 14.6 107 101-223 269-386 (711)
324 2j04_A TAU60, YPL007P, hypothe 29.6 5.7E+02 0.019 27.7 19.8 176 81-317 96-289 (588)
325 3p5b_L Low density lipoprotein 29.4 4.5E+02 0.015 26.4 27.2 188 81-341 123-321 (400)
326 2oit_A Nucleoporin 214KDA; NH2 28.3 4.8E+02 0.017 26.4 17.7 59 135-217 162-222 (434)
327 3tc9_A Hypothetical hydrolase; 27.7 3.3E+02 0.011 27.9 11.1 134 156-339 159-300 (430)
328 2be1_A Serine/threonine-protei 26.9 1.3E+02 0.0046 30.2 7.5 101 209-342 20-132 (339)
329 2cn3_A Xyloglucanase, beta-1,4 26.5 6.8E+02 0.023 27.6 19.6 180 64-287 127-343 (737)
330 4a5s_A Dipeptidyl peptidase 4 26.5 2.7E+02 0.0094 30.5 10.9 69 157-226 37-109 (740)
331 3tc9_A Hypothetical hydrolase; 26.4 3.4E+02 0.012 27.7 10.9 124 101-254 159-290 (430)
332 1a12_A RCC1, regulator of chro 24.9 5.4E+02 0.018 25.8 19.8 19 237-255 295-314 (413)
333 3sre_A PON1, serum paraoxonase 23.8 5.6E+02 0.019 25.6 14.7 168 81-280 60-251 (355)
334 3k6s_A Integrin alpha-X; cell 23.1 5.1E+02 0.017 30.4 12.5 187 125-343 334-545 (1095)
335 3c75_H MADH, methylamine dehyd 22.7 2.7E+02 0.0092 28.8 9.2 83 189-294 330-416 (426)
336 2ful_A EIF-5, eukaryotic trans 22.5 21 0.00073 32.5 0.5 10 506-515 155-164 (177)
337 3vu4_A KMHSV2; beta-propeller 21.5 5.6E+02 0.019 24.7 20.4 56 189-257 206-263 (355)
338 3qqz_A Putative uncharacterize 21.2 5.3E+02 0.018 24.4 27.3 205 71-339 29-252 (255)
339 1fwx_A Nitrous oxide reductase 20.6 8.3E+02 0.028 26.4 13.1 91 121-224 82-192 (595)
340 3a0f_A Xyloglucanase; beta-pro 20.3 8.9E+02 0.031 26.7 25.1 228 72-348 24-292 (763)
No 1
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=3.6e-46 Score=385.39 Aligned_cols=291 Identities=18% Similarity=0.258 Sum_probs=244.3
Q ss_pred CCCCCCCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeC
Q 007468 63 VPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGG 142 (602)
Q Consensus 63 ~~~P~~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG 142 (602)
.+.|.+|..|+++.+ ++.||||||. ++ ..++++++||+.+++|..++. +|.+|.+|+++++++.|||+||
T Consensus 9 ~~~~~~~~~~~~~~~---~~~i~v~GG~--~~---~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG 78 (308)
T 1zgk_A 9 HSSGLVPRGSHAPKV---GRLIYTAGGY--FR---QSLSYLEAYNPSNGTWLRLAD--LQVPRSGLAGCVVGGLLYAVGG 78 (308)
T ss_dssp ------------CCC---CCCEEEECCB--SS---SBCCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECC
T ss_pred ccCCeeeCCccccCC---CCEEEEEeCc--CC---CCcceEEEEcCCCCeEeECCC--CCcccccceEEEECCEEEEECC
Confidence 457788999999988 8999999996 22 367899999999999999965 6789999999999999999999
Q ss_pred ccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceE
Q 007468 143 EFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (602)
Q Consensus 143 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~ 222 (602)
....... ...++++|+||+.+++|+.+++ +|.+|.+|++++++++||||||.... ..++++++||+.+++|+
T Consensus 79 ~~~~~~~--~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~yd~~~~~W~ 150 (308)
T 1zgk_A 79 RNNSPDG--NTDSSALDCYNPMTNQWSPCAP--MSVPRNRIGVGVIDGHIYAVGGSHGC----IHHNSVERYEPERDEWH 150 (308)
T ss_dssp EEEETTE--EEECCCEEEEETTTTEEEECCC--CSSCCBTCEEEEETTEEEEECCEETT----EECCCEEEEETTTTEEE
T ss_pred CcCCCCC--CeecceEEEECCCCCeEeECCC--CCcCccccEEEEECCEEEEEcCCCCC----cccccEEEECCCCCeEe
Confidence 8421111 2467899999999999999987 89999999999999999999998653 35899999999999999
Q ss_pred EeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEE
Q 007468 223 EIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM 302 (602)
Q Consensus 223 ~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~ 302 (602)
.++++ |.+|.+|++++++++|||+||.... ..++++++||+.+++|+.+.++ |.+|.+|++
T Consensus 151 ~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~ 211 (308)
T 1zgk_A 151 LVAPM-----LTRRIGVGVAVLNRLLYAVGGFDGT-----------NRLNSAECYYPERNEWRMITAM---NTIRSGAGV 211 (308)
T ss_dssp ECCCC-----SSCCBSCEEEEETTEEEEECCBCSS-----------CBCCCEEEEETTTTEEEECCCC---SSCCBSCEE
T ss_pred ECCCC-----CccccceEEEEECCEEEEEeCCCCC-----------CcCceEEEEeCCCCeEeeCCCC---CCccccceE
Confidence 99877 8899999999999999999998765 3478999999999999999764 889999999
Q ss_pred EEECCeEEEeccccccccccccccccccCeeEEEECCCCceEEeEecCCCchhhhhcccccCCCCchhhhhccCchhhhh
Q 007468 303 CVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEE 382 (602)
Q Consensus 303 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (602)
++++++||||||.... ..++++++||+.+++|+.+..
T Consensus 212 ~~~~~~iyv~GG~~~~---------~~~~~v~~yd~~~~~W~~~~~---------------------------------- 248 (308)
T 1zgk_A 212 CVLHNCIYAAGGYDGQ---------DQLNSVERYDVETETWTFVAP---------------------------------- 248 (308)
T ss_dssp EEETTEEEEECCBCSS---------SBCCCEEEEETTTTEEEECCC----------------------------------
T ss_pred EEECCEEEEEeCCCCC---------CccceEEEEeCCCCcEEECCC----------------------------------
Confidence 9999999999998752 348999999999999998765
Q ss_pred cccCccchhhhhhhhhhhcccccccccccCCCceeeccCceeeecCCCCCCccccccccccCCCCCcCCccCcccceeee
Q 007468 383 FDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVG 462 (602)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~ 462 (602)
+|.+|..|++++.
T Consensus 249 -------------------------------------------------------------------~p~~r~~~~~~~~ 261 (308)
T 1zgk_A 249 -------------------------------------------------------------------MKHRRSALGITVH 261 (308)
T ss_dssp -------------------------------------------------------------------CSSCCBSCEEEEE
T ss_pred -------------------------------------------------------------------CCCCccceEEEEE
Confidence 6899999999999
Q ss_pred cCeEEEEeceEEecCeeeeecchhhcccCCCCccEEeecCChh
Q 007468 463 KDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPASES 505 (602)
Q Consensus 463 ~~~lyv~GG~~e~g~~~~~l~Dl~~ldl~~~~~W~~~~~~~~~ 505 (602)
+++|||+||... ...++|+|+||+.+ ++|+.+.++...
T Consensus 262 ~~~i~v~GG~~~----~~~~~~v~~yd~~~-~~W~~~~~~p~~ 299 (308)
T 1zgk_A 262 QGRIYVLGGYDG----HTFLDSVECYDPDT-DTWSEVTRMTSG 299 (308)
T ss_dssp TTEEEEECCBCS----SCBCCEEEEEETTT-TEEEEEEECSSC
T ss_pred CCEEEEEcCcCC----CcccceEEEEcCCC-CEEeecCCCCCC
Confidence 999999999753 23689999999998 999999776553
No 2
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=2e-44 Score=371.39 Aligned_cols=273 Identities=16% Similarity=0.236 Sum_probs=239.4
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~ 160 (602)
.+.||||||... ++++++||+.+++|..++. +|.+|.+|+++++++.|||+||.. . ..++++++
T Consensus 11 ~~~l~~~GG~~~-------~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG~~-~------~~~~~~~~ 74 (306)
T 3ii7_A 11 HDYRIALFGGSQ-------PQSCRYFNPKDYSWTDIRC--PFEKRRDAACVFWDNVVYILGGSQ-L------FPIKRMDC 74 (306)
T ss_dssp CCEEEEEECCSS-------TTSEEEEETTTTEEEECCC--CSCCCBSCEEEEETTEEEEECCBS-S------SBCCEEEE
T ss_pred cceEEEEeCCCC-------CceEEEecCCCCCEecCCC--CCcccceeEEEEECCEEEEEeCCC-C------CCcceEEE
Confidence 478999999521 6899999999999999976 578999999999999999999986 1 25799999
Q ss_pred EECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCcccee
Q 007468 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (602)
Q Consensus 161 yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~ 240 (602)
||+.+++|+.+++ +|.+|.+|++++++++||||||.... ...++++++||+.+++|+.++++ |.+|.+|+
T Consensus 75 ~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~~d~~~~~W~~~~~~-----p~~r~~~~ 144 (306)
T 3ii7_A 75 YNVVKDSWYSKLG--PPTPRDSLAACAAEGKIYTSGGSEVG---NSALYLFECYDTRTESWHTKPSM-----LTQRCSHG 144 (306)
T ss_dssp EETTTTEEEEEEC--CSSCCBSCEEEEETTEEEEECCBBTT---BSCCCCEEEEETTTTEEEEECCC-----SSCCBSCE
T ss_pred EeCCCCeEEECCC--CCccccceeEEEECCEEEEECCCCCC---CcEeeeEEEEeCCCCceEeCCCC-----cCCcceeE
Confidence 9999999999987 89999999999999999999998632 33689999999999999999887 88999999
Q ss_pred EEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEecccccccc
Q 007468 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEM 320 (602)
Q Consensus 241 ~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~ 320 (602)
+++++++|||+||.... ...+..++++++||+.+++|+.++++ |.+|.+|++++++++||||||....
T Consensus 145 ~~~~~~~iyv~GG~~~~-------~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~-- 212 (306)
T 3ii7_A 145 MVEANGLIYVCGGSLGN-------NVSGRVLNSCEVYDPATETWTELCPM---IEARKNHGLVFVKDKIFAVGGQNGL-- 212 (306)
T ss_dssp EEEETTEEEEECCEESC-------TTTCEECCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCEETT--
T ss_pred EEEECCEEEEECCCCCC-------CCcccccceEEEeCCCCCeEEECCCc---cchhhcceEEEECCEEEEEeCCCCC--
Confidence 99999999999998765 11123588999999999999999764 8899999999999999999998652
Q ss_pred ccccccccccCeeEEEECCCCceEEeEecCCCchhhhhcccccCCCCchhhhhccCchhhhhcccCccchhhhhhhhhhh
Q 007468 321 KGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADE 400 (602)
Q Consensus 321 ~~~~~~~~~~ndv~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (602)
..++++++||+.+++|+.++.
T Consensus 213 -------~~~~~~~~yd~~~~~W~~~~~---------------------------------------------------- 233 (306)
T 3ii7_A 213 -------GGLDNVEYYDIKLNEWKMVSP---------------------------------------------------- 233 (306)
T ss_dssp -------EEBCCEEEEETTTTEEEECCC----------------------------------------------------
T ss_pred -------CCCceEEEeeCCCCcEEECCC----------------------------------------------------
Confidence 357899999999999998765
Q ss_pred cccccccccccCCCceeeccCceeeecCCCCCCccccccccccCCCCCcCCccCcccceeeecCeEEEEeceEEecCeee
Q 007468 401 MESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEI 480 (602)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~lyv~GG~~e~g~~~~ 480 (602)
+|.+|..|++++.+++|||+||.... .
T Consensus 234 -------------------------------------------------~p~~r~~~~~~~~~~~i~v~GG~~~~----~ 260 (306)
T 3ii7_A 234 -------------------------------------------------MPWKGVTVKCAAVGSIVYVLAGFQGV----G 260 (306)
T ss_dssp -------------------------------------------------CSCCBSCCEEEEETTEEEEEECBCSS----S
T ss_pred -------------------------------------------------CCCCccceeEEEECCEEEEEeCcCCC----e
Confidence 68999999999999999999998633 2
Q ss_pred eecchhhcccCCCCccEEeecCCh
Q 007468 481 TLDDLYSLNLSKLDEWKCIIPASE 504 (602)
Q Consensus 481 ~l~Dl~~ldl~~~~~W~~~~~~~~ 504 (602)
.++++|+||+.+ ++|+.+.++..
T Consensus 261 ~~~~~~~yd~~~-~~W~~~~~~~~ 283 (306)
T 3ii7_A 261 RLGHILEYNTET-DKWVANSKVRA 283 (306)
T ss_dssp BCCEEEEEETTT-TEEEEEEEEEC
T ss_pred eeeeEEEEcCCC-CeEEeCCCccc
Confidence 688999999999 99999976654
No 3
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=3.2e-44 Score=369.16 Aligned_cols=272 Identities=18% Similarity=0.290 Sum_probs=239.0
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~ 160 (602)
++.||||||.. . ..++++++||+.+++|..++. +|.+|.+|+++++++.|||+||.... ..++++++
T Consensus 15 ~~~i~v~GG~~--~---~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG~~~~------~~~~~~~~ 81 (302)
T 2xn4_A 15 PKLMVVVGGQA--P---KAIRSVECYDFKEERWHQVAE--LPSRRCRAGMVYMAGLVFAVGGFNGS------LRVRTVDS 81 (302)
T ss_dssp CEEEEEECCBS--S---SBCCCEEEEETTTTEEEEECC--CSSCCBSCEEEEETTEEEEESCBCSS------SBCCCEEE
T ss_pred CCEEEEECCCC--C---CCCCcEEEEcCcCCcEeEccc--CCcccccceEEEECCEEEEEeCcCCC------ccccceEE
Confidence 68999999962 1 257899999999999999975 67899999999999999999998643 24689999
Q ss_pred EECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCcccee
Q 007468 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (602)
Q Consensus 161 yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~ 240 (602)
||+.+++|+.+++ +|.+|.+|++++++++||||||.... ..++++++||+.+++|+.++++ |.+|.+|+
T Consensus 82 ~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~d~~~~~W~~~~~~-----p~~r~~~~ 150 (302)
T 2xn4_A 82 YDPVKDQWTSVAN--MRDRRSTLGAAVLNGLLYAVGGFDGS----TGLSSVEAYNIKSNEWFHVAPM-----NTRRSSVG 150 (302)
T ss_dssp EETTTTEEEEECC--CSSCCBSCEEEEETTEEEEEEEECSS----CEEEEEEEEETTTTEEEEECCC-----SSCCBSCE
T ss_pred ECCCCCceeeCCC--CCccccceEEEEECCEEEEEcCCCCC----ccCceEEEEeCCCCeEeecCCC-----CCcccCce
Confidence 9999999999987 89999999999999999999998653 3579999999999999999887 88999999
Q ss_pred EEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEecccccccc
Q 007468 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEM 320 (602)
Q Consensus 241 ~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~ 320 (602)
+++++++|||+||.... ....++++++||+.+++|+.+.++ |.+|.+|++++++++||||||...
T Consensus 151 ~~~~~~~iyv~GG~~~~---------~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~--- 215 (302)
T 2xn4_A 151 VGVVGGLLYAVGGYDVA---------SRQCLSTVECYNATTNEWTYIAEM---STRRSGAGVGVLNNLLYAVGGHDG--- 215 (302)
T ss_dssp EEEETTEEEEECCEETT---------TTEECCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCBSS---
T ss_pred EEEECCEEEEEeCCCCC---------CCccccEEEEEeCCCCcEEECCCC---ccccccccEEEECCEEEEECCCCC---
Confidence 99999999999998764 124678999999999999999764 889999999999999999999864
Q ss_pred ccccccccccCeeEEEECCCCceEEeEecCCCchhhhhcccccCCCCchhhhhccCchhhhhcccCccchhhhhhhhhhh
Q 007468 321 KGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADE 400 (602)
Q Consensus 321 ~~~~~~~~~~ndv~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (602)
...++++++||+.+++|+.+..
T Consensus 216 ------~~~~~~~~~yd~~~~~W~~~~~---------------------------------------------------- 237 (302)
T 2xn4_A 216 ------PLVRKSVEVYDPTTNAWRQVAD---------------------------------------------------- 237 (302)
T ss_dssp ------SSBCCCEEEEETTTTEEEEECC----------------------------------------------------
T ss_pred ------CcccceEEEEeCCCCCEeeCCC----------------------------------------------------
Confidence 2357899999999999998765
Q ss_pred cccccccccccCCCceeeccCceeeecCCCCCCccccccccccCCCCCcCCccCcccceeeecCeEEEEeceEEecCeee
Q 007468 401 MESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEI 480 (602)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~lyv~GG~~e~g~~~~ 480 (602)
+|.+|.+|++++.+++|||+||.... .
T Consensus 238 -------------------------------------------------~~~~r~~~~~~~~~~~i~v~GG~~~~----~ 264 (302)
T 2xn4_A 238 -------------------------------------------------MNMCRRNAGVCAVNGLLYVVGGDDGS----C 264 (302)
T ss_dssp -------------------------------------------------CSSCCBSCEEEEETTEEEEECCBCSS----S
T ss_pred -------------------------------------------------CCCccccCeEEEECCEEEEECCcCCC----c
Confidence 68899999999999999999997532 3
Q ss_pred eecchhhcccCCCCccEEee-cCC
Q 007468 481 TLDDLYSLNLSKLDEWKCII-PAS 503 (602)
Q Consensus 481 ~l~Dl~~ldl~~~~~W~~~~-~~~ 503 (602)
.++++|+||+.+ ++|+.+. ++.
T Consensus 265 ~~~~v~~yd~~~-~~W~~~~~~~~ 287 (302)
T 2xn4_A 265 NLASVEYYNPTT-DKWTVVSSCMS 287 (302)
T ss_dssp BCCCEEEEETTT-TEEEECSSCCS
T ss_pred ccccEEEEcCCC-CeEEECCcccC
Confidence 589999999999 9999986 443
No 4
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=2.8e-44 Score=378.32 Aligned_cols=306 Identities=19% Similarity=0.251 Sum_probs=242.0
Q ss_pred ccCCCCCCCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcC--CCcEEEecCCCCC-CCceeeEEEEECCEE
Q 007468 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE--KQEWKVISSPNSP-PPRSAHQAVSWKNYL 137 (602)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~--~~~W~~l~~~~~P-~~R~~hs~~~~~~~i 137 (602)
..+++|.+|.+|+++++ +++||||||.. .+++|+||+. +++|+.+++ +| .+|.+|++++++++|
T Consensus 2 ~l~~lP~~r~~~~~~~~---~~~iyv~GG~~--------~~~~~~~d~~~~~~~W~~~~~--~p~~~R~~~~~~~~~~~l 68 (357)
T 2uvk_A 2 VLPETPVPFKSGTGAID---NDTVYIGLGSA--------GTAWYKLDTQAKDKKWTALAA--FPGGPRDQATSAFIDGNL 68 (357)
T ss_dssp CSCCCSSCCCSCEEEEE---TTEEEEECGGG--------TTCEEEEETTSSSCCEEECCC--CTTCCCBSCEEEEETTEE
T ss_pred CCCCCCccccceEEEEE---CCEEEEEeCcC--------CCeEEEEccccCCCCeeECCC--CCCCcCccceEEEECCEE
Confidence 45788999999999998 89999999952 2589999998 499999977 56 789999999999999
Q ss_pred EEEeCccC-CCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCC-------------
Q 007468 138 YIFGGEFT-SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLR------------- 203 (602)
Q Consensus 138 yV~GG~~~-~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~------------- 203 (602)
|||||... ... ....++++|+||+.+++|+.+++.. |.+|.+|++++++++||||||......
T Consensus 69 yv~GG~~~~~~~--~~~~~~~v~~yd~~~~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 145 (357)
T 2uvk_A 69 YVFGGIGKNSEG--LTQVFNDVHKYNPKTNSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKD 145 (357)
T ss_dssp EEECCEEECTTS--CEEECCCEEEEETTTTEEEECSCCC-SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTC
T ss_pred EEEcCCCCCCCc--cceeeccEEEEeCCCCcEEECCCCC-CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCc
Confidence 99999832 111 1346899999999999999998833 599999999999999999999854210
Q ss_pred -----------------CeeeeceEEEEECCCCceEEeccCCCCCCCCC-ccceeEEEeCCEEEEEcCccCCCCCccCCC
Q 007468 204 -----------------EVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP-RSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265 (602)
Q Consensus 204 -----------------~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~-R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~ 265 (602)
...+++++++||+.+++|+.+.++ |.+ |.+|++++++++||||||....
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~-----p~~~~~~~~~~~~~~~iyv~GG~~~~-------- 212 (357)
T 2uvk_A 146 STAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGES-----PWYGTAGAAVVNKGDKTWLINGEAKP-------- 212 (357)
T ss_dssp HHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEEC-----SSCCCBSCEEEEETTEEEEECCEEET--------
T ss_pred ccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCC-----CCCCcccccEEEECCEEEEEeeecCC--------
Confidence 002468999999999999999887 655 4559999999999999998754
Q ss_pred CCCceeeeEEEEeC--CCCeeEEeecCCCCCCCCceeEEEEECCeEEEeccccccccccc--------cccccccCeeEE
Q 007468 266 EKGIIHSDLWSLDP--RTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGD--------VIMSLFLNELYG 335 (602)
Q Consensus 266 ~~~~~~~dv~~yd~--~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~--------~~~~~~~ndv~~ 335 (602)
+...+++++||+ .+++|+.+..+ ..|.+|.+|++++++++||||||......... ......++++++
T Consensus 213 --~~~~~~v~~~d~d~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 289 (357)
T 2uvk_A 213 --GLRTDAVFELDFTGNNLKWNKLAPV-SSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDI 289 (357)
T ss_dssp --TEECCCEEEEECC---CEEEECCCS-STTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEE
T ss_pred --CcccCceEEEEecCCCCcEEecCCC-CCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEE
Confidence 356788999986 89999999876 23455778999999999999999864221000 000223578999
Q ss_pred EECCCCceEEeEecCCCchhhhhcccccCCCCchhhhhccCchhhhhcccCccchhhhhhhhhhhcccccccccccCCCc
Q 007468 336 FQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNS 415 (602)
Q Consensus 336 yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (602)
||+.+++|+.+..
T Consensus 290 yd~~~~~W~~~~~------------------------------------------------------------------- 302 (357)
T 2uvk_A 290 HLWHNGKWDKSGE------------------------------------------------------------------- 302 (357)
T ss_dssp EECC---CEEEEE-------------------------------------------------------------------
T ss_pred EecCCCceeeCCC-------------------------------------------------------------------
Confidence 9999999999866
Q ss_pred eeeccCceeeecCCCCCCccccccccccCCCCCcCCccCcccceeeecCeEEEEeceEEecCeeeeecchhhcccCCCCc
Q 007468 416 VIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDE 495 (602)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~lyv~GG~~e~g~~~~~l~Dl~~ldl~~~~~ 495 (602)
+|.+|..|++++.+++||||||....+ ..++|+|.|+++. ++
T Consensus 303 ----------------------------------~p~~r~~~~~~~~~~~i~v~GG~~~~~---~~~~~v~~l~~~~-~~ 344 (357)
T 2uvk_A 303 ----------------------------------LSQGRAYGVSLPWNNSLLIIGGETAGG---KAVTDSVLITVKD-NK 344 (357)
T ss_dssp ----------------------------------CSSCCBSSEEEEETTEEEEEEEECGGG---CEEEEEEEEEC-C-CS
T ss_pred ----------------------------------CCCCcccceeEEeCCEEEEEeeeCCCC---CEeeeEEEEEEcC-cE
Confidence 699999999999999999999988555 4589999999998 99
Q ss_pred cEEeecCC
Q 007468 496 WKCIIPAS 503 (602)
Q Consensus 496 W~~~~~~~ 503 (602)
|..+.|..
T Consensus 345 ~~~~~~~~ 352 (357)
T 2uvk_A 345 VTVQNLEH 352 (357)
T ss_dssp CEEEC---
T ss_pred eEeeeccc
Confidence 99987653
No 5
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=7.7e-44 Score=365.86 Aligned_cols=273 Identities=19% Similarity=0.312 Sum_probs=240.7
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~ 160 (602)
++.||||||.... ...++++++||+.+++|..++. +|.+|.+|+++++++.|||+||.... ..++++|+
T Consensus 14 ~~~i~~~GG~~~~---~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~l~v~GG~~~~------~~~~~~~~ 82 (301)
T 2vpj_A 14 NEVLLVVGGFGSQ---QSPIDVVEKYDPKTQEWSFLPS--ITRKRRYVASVSLHDRIYVIGGYDGR------SRLSSVEC 82 (301)
T ss_dssp CEEEEEECCEETT---TEECCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECCBCSS------CBCCCEEE
T ss_pred CCEEEEEeCccCC---CcceeEEEEEcCCCCeEEeCCC--CChhhccccEEEECCEEEEEcCCCCC------ccCceEEE
Confidence 7899999994222 2478999999999999999986 56899999999999999999998632 25789999
Q ss_pred EECCCCc---EEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCcc
Q 007468 161 LDLKTNQ---WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237 (602)
Q Consensus 161 yd~~t~~---W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~ 237 (602)
||+.+++ |+.+++ +|.+|.+|++++++++||||||..... .++++++||+.+++|+.++++ |.+|.
T Consensus 83 ~d~~~~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG~~~~~----~~~~~~~~d~~~~~W~~~~~~-----p~~r~ 151 (301)
T 2vpj_A 83 LDYTADEDGVWYSVAP--MNVRRGLAGATTLGDMIYVSGGFDGSR----RHTSMERYDPNIDQWSMLGDM-----QTARE 151 (301)
T ss_dssp EETTCCTTCCCEEECC--CSSCCBSCEEEEETTEEEEECCBCSSC----BCCEEEEEETTTTEEEEEEEC-----SSCCB
T ss_pred EECCCCCCCeeEECCC--CCCCccceeEEEECCEEEEEcccCCCc----ccceEEEEcCCCCeEEECCCC-----CCCcc
Confidence 9999999 999977 899999999999999999999987532 478999999999999999887 88999
Q ss_pred ceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEeccccc
Q 007468 238 GFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVD 317 (602)
Q Consensus 238 ~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~ 317 (602)
+|++++++++|||+||+... ..++++++||+.+++|+.+.++ |.+|.+|++++++++||||||...
T Consensus 152 ~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~~d~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~ 217 (301)
T 2vpj_A 152 GAGLVVASGVIYCLGGYDGL-----------NILNSVEKYDPHTGHWTNVTPM---ATKRSGAGVALLNDHIYVVGGFDG 217 (301)
T ss_dssp SCEEEEETTEEEEECCBCSS-----------CBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCBCS
T ss_pred cceEEEECCEEEEECCCCCC-----------cccceEEEEeCCCCcEEeCCCC---CcccccceEEEECCEEEEEeCCCC
Confidence 99999999999999998765 4678999999999999999654 889999999999999999999865
Q ss_pred cccccccccccccCeeEEEECCCCceEEeEecCCCchhhhhcccccCCCCchhhhhccCchhhhhcccCccchhhhhhhh
Q 007468 318 MEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEE 397 (602)
Q Consensus 318 ~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (602)
. ..++++++||+.+++|..++.
T Consensus 218 ~---------~~~~~v~~yd~~~~~W~~~~~------------------------------------------------- 239 (301)
T 2vpj_A 218 T---------AHLSSVEAYNIRTDSWTTVTS------------------------------------------------- 239 (301)
T ss_dssp S---------SBCCCEEEEETTTTEEEEECC-------------------------------------------------
T ss_pred C---------cccceEEEEeCCCCcEEECCC-------------------------------------------------
Confidence 2 247899999999999998765
Q ss_pred hhhcccccccccccCCCceeeccCceeeecCCCCCCccccccccccCCCCCcCCccCcccceeeecCeEEEEeceEEecC
Q 007468 398 ADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEIND 477 (602)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~lyv~GG~~e~g~ 477 (602)
+|.+|..|++++.+++|||+||....
T Consensus 240 ----------------------------------------------------~p~~r~~~~~~~~~~~i~v~GG~~~~-- 265 (301)
T 2vpj_A 240 ----------------------------------------------------MTTPRCYVGATVLRGRLYAIAGYDGN-- 265 (301)
T ss_dssp ----------------------------------------------------CSSCCBSCEEEEETTEEEEECCBCSS--
T ss_pred ----------------------------------------------------CCCcccceeEEEECCEEEEEcCcCCC--
Confidence 68999999999999999999997533
Q ss_pred eeeeecchhhcccCCCCccEEeecCCh
Q 007468 478 QEITLDDLYSLNLSKLDEWKCIIPASE 504 (602)
Q Consensus 478 ~~~~l~Dl~~ldl~~~~~W~~~~~~~~ 504 (602)
..++++|+||+.+ ++|+.+.++..
T Consensus 266 --~~~~~v~~yd~~~-~~W~~~~~~~~ 289 (301)
T 2vpj_A 266 --SLLSSIECYDPII-DSWEVVTSMGT 289 (301)
T ss_dssp --SBEEEEEEEETTT-TEEEEEEEEEE
T ss_pred --cccccEEEEcCCC-CeEEEcCCCCc
Confidence 2679999999998 99999976544
No 6
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=5.6e-44 Score=369.98 Aligned_cols=279 Identities=22% Similarity=0.387 Sum_probs=236.8
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~ 160 (602)
.+.||+||| +++++|||.+++|.. +.++.|.+|.+|+++++++.|||+||.............+++|+
T Consensus 4 ~~~l~~~GG-----------~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 71 (315)
T 4asc_A 4 QDLIFMISE-----------EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQ 71 (315)
T ss_dssp EEEEEEEET-----------TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEE
T ss_pred ceEEEEEcC-----------CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEE
Confidence 467999999 489999999999997 55555779999999999999999999742211111234677999
Q ss_pred EECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCcccee
Q 007468 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (602)
Q Consensus 161 yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~ 240 (602)
||+.+++|+.+++ +|.+|.+|++++++++||||||..... ....++++++||+.+++|+.++++ |.+|++|+
T Consensus 72 ~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~~~~d~~~~~W~~~~~~-----p~~r~~~~ 143 (315)
T 4asc_A 72 FDHLDSEWLGMPP--LPSPRCLFGLGEALNSIYVVGGREIKD-GERCLDSVMCYDRLSFKWGESDPL-----PYVVYGHT 143 (315)
T ss_dssp EETTTTEEEECCC--BSSCEESCEEEEETTEEEEECCEESST-TCCBCCCEEEEETTTTEEEECCCC-----SSCCBSCE
T ss_pred ecCCCCeEEECCC--CCcchhceeEEEECCEEEEEeCCcCCC-CCcccceEEEECCCCCcEeECCCC-----CCccccee
Confidence 9999999999987 899999999999999999999975321 133689999999999999999887 88999999
Q ss_pred EEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEecccccccc
Q 007468 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEM 320 (602)
Q Consensus 241 ~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~ 320 (602)
+++++++|||+||.... ...++++++||+.+++|+.++++ |.+|.+|++++++++||||||....
T Consensus 144 ~~~~~~~iyv~GG~~~~----------~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~-- 208 (315)
T 4asc_A 144 VLSHMDLVYVIGGKGSD----------RKCLNKMCVYDPKKFEWKELAPM---QTARSLFGATVHDGRIIVAAGVTDT-- 208 (315)
T ss_dssp EEEETTEEEEECCBCTT----------SCBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEETTEEEEEEEECSS--
T ss_pred EEEECCEEEEEeCCCCC----------CcccceEEEEeCCCCeEEECCCC---CCchhceEEEEECCEEEEEeccCCC--
Confidence 99999999999998533 35788999999999999999765 8899999999999999999998652
Q ss_pred ccccccccccCeeEEEECCCCceEEeEecCCCchhhhhcccccCCCCchhhhhccCchhhhhcccCccchhhhhhhhhhh
Q 007468 321 KGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADE 400 (602)
Q Consensus 321 ~~~~~~~~~~ndv~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (602)
..++++++||+.+++|+.++.
T Consensus 209 -------~~~~~~~~yd~~~~~W~~~~~---------------------------------------------------- 229 (315)
T 4asc_A 209 -------GLTSSAEVYSITDNKWAPFEA---------------------------------------------------- 229 (315)
T ss_dssp -------SEEEEEEEEETTTTEEEEECC----------------------------------------------------
T ss_pred -------CccceEEEEECCCCeEEECCC----------------------------------------------------
Confidence 357899999999999998865
Q ss_pred cccccccccccCCCceeeccCceeeecCCCCCCccccccccccCCCCCcCCccCcccceeeecCeEEEEeceEEec----
Q 007468 401 MESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEIN---- 476 (602)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~lyv~GG~~e~g---- 476 (602)
+|.+|..|++++.+++|||+||.....
T Consensus 230 -------------------------------------------------~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~ 260 (315)
T 4asc_A 230 -------------------------------------------------FPQERSSLSLVSLVGTLYAIGGFATLETESG 260 (315)
T ss_dssp -------------------------------------------------CSSCCBSCEEEEETTEEEEEEEEEEEECTTS
T ss_pred -------------------------------------------------CCCcccceeEEEECCEEEEECCccccCcCCc
Confidence 699999999999999999999987531
Q ss_pred Ce-eeeecchhhcccCCCCccEEeecCC
Q 007468 477 DQ-EITLDDLYSLNLSKLDEWKCIIPAS 503 (602)
Q Consensus 477 ~~-~~~l~Dl~~ldl~~~~~W~~~~~~~ 503 (602)
.. ...++|+|+||+.+ ++|+.+.+..
T Consensus 261 ~~~~~~~~~v~~yd~~~-~~W~~~~~~~ 287 (315)
T 4asc_A 261 ELVPTELNDIWRYNEEE-KKWEGVLREI 287 (315)
T ss_dssp CEEEEEEEEEEEEETTT-TEEEEEESCS
T ss_pred cccccccCcEEEecCCC-ChhhhhccCC
Confidence 11 14689999999999 9999995543
No 7
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=1.4e-43 Score=367.42 Aligned_cols=286 Identities=21% Similarity=0.373 Sum_probs=236.9
Q ss_pred CCCCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccC
Q 007468 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145 (602)
Q Consensus 66 P~~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~ 145 (602)
..+|.++.. .+.||+|||. ++++|||.+++|... +++.|.+|.+|+++++++.|||+||...
T Consensus 6 ~~~r~~~~~------~~~i~~~GG~-----------~~~~yd~~~~~W~~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~ 67 (318)
T 2woz_A 6 DIPRHGMFV------KDLILLVNDT-----------AAVAYDPMENECYLT-ALAEQIPRNHSSIVTQQNQVYVVGGLYV 67 (318)
T ss_dssp SSCCCCCSE------EEEEEEECSS-----------EEEEEETTTTEEEEE-EECTTSCSSEEEEECSSSCEEEEESSCC
T ss_pred cccccccee------cchhhhcccc-----------ceEEECCCCCceecc-cCCccCCccceEEEEECCEEEEECCccc
Confidence 356666544 4689999993 479999999999984 3445689999999999999999999642
Q ss_pred CCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEec
Q 007468 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (602)
Q Consensus 146 ~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~ 225 (602)
..........+++++||+.+++|+.+++ +|.+|++|++++++++||||||..... ...++++++||+.+++|+.++
T Consensus 68 ~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~yd~~~~~W~~~~ 143 (318)
T 2woz_A 68 DEENKDQPLQSYFFQLDNVSSEWVGLPP--LPSARCLFGLGEVDDKIYVVAGKDLQT--EASLDSVLCYDPVAAKWSEVK 143 (318)
T ss_dssp -------CCCBEEEEEETTTTEEEECSC--BSSCBCSCEEEEETTEEEEEEEEBTTT--CCEEEEEEEEETTTTEEEEEC
T ss_pred CccccCCCccccEEEEeCCCCcEEECCC--CCccccccceEEECCEEEEEcCccCCC--CcccceEEEEeCCCCCEeECC
Confidence 2111001134569999999999999987 899999999999999999999986321 336899999999999999998
Q ss_pred cCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE
Q 007468 226 PRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (602)
Q Consensus 226 ~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~ 305 (602)
++ |.+|.+|++++++++|||+||.... ...++++++||+.+++|+.++++ |.+|..|+++++
T Consensus 144 ~~-----p~~r~~~~~~~~~~~iyv~GG~~~~----------~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~ 205 (318)
T 2woz_A 144 NL-----PIKVYGHNVISHNGMIYCLGGKTDD----------KKCTNRVFIYNPKKGDWKDLAPM---KTPRSMFGVAIH 205 (318)
T ss_dssp CC-----SSCEESCEEEEETTEEEEECCEESS----------SCBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEEE
T ss_pred CC-----CCcccccEEEEECCEEEEEcCCCCC----------CCccceEEEEcCCCCEEEECCCC---CCCcccceEEEE
Confidence 77 8899999999999999999998654 35678999999999999999764 889999999999
Q ss_pred CCeEEEeccccccccccccccccccCeeEEEECCCCceEEeEecCCCchhhhhcccccCCCCchhhhhccCchhhhhccc
Q 007468 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDA 385 (602)
Q Consensus 306 ~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (602)
+++||||||.... ..++++++||+.+++|+.+..
T Consensus 206 ~~~iyv~GG~~~~---------~~~~~~~~yd~~~~~W~~~~~------------------------------------- 239 (318)
T 2woz_A 206 KGKIVIAGGVTED---------GLSASVEAFDLKTNKWEVMTE------------------------------------- 239 (318)
T ss_dssp TTEEEEEEEEETT---------EEEEEEEEEETTTCCEEECCC-------------------------------------
T ss_pred CCEEEEEcCcCCC---------CccceEEEEECCCCeEEECCC-------------------------------------
Confidence 9999999998652 357899999999999998765
Q ss_pred CccchhhhhhhhhhhcccccccccccCCCceeeccCceeeecCCCCCCccccccccccCCCCCcCCccCcccceeeecCe
Q 007468 386 NEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDT 465 (602)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~ 465 (602)
+|.+|..|++++.+++
T Consensus 240 ----------------------------------------------------------------~p~~r~~~~~~~~~~~ 255 (318)
T 2woz_A 240 ----------------------------------------------------------------FPQERSSISLVSLAGS 255 (318)
T ss_dssp ----------------------------------------------------------------CSSCCBSCEEEEETTE
T ss_pred ----------------------------------------------------------------CCCcccceEEEEECCE
Confidence 6899999999999999
Q ss_pred EEEEeceEEecC--e---eeeecchhhcccCCCCccEEeecC
Q 007468 466 LYVYGGMMEIND--Q---EITLDDLYSLNLSKLDEWKCIIPA 502 (602)
Q Consensus 466 lyv~GG~~e~g~--~---~~~l~Dl~~ldl~~~~~W~~~~~~ 502 (602)
|||+||...... . ...++|+|+||+.+ ++|+.+.+.
T Consensus 256 i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~-~~W~~~~~~ 296 (318)
T 2woz_A 256 LYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK-KEWAGMLKE 296 (318)
T ss_dssp EEEECCBCCBC----CCBCCBCCCEEEEETTT-TEEEEEESC
T ss_pred EEEECCeeccCCCCceeccceeeeEEEEeCCC-CEehhhccc
Confidence 999999864311 1 13589999999999 999999443
No 8
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=7.6e-43 Score=361.44 Aligned_cols=252 Identities=20% Similarity=0.380 Sum_probs=213.8
Q ss_pred CCCCCCCcceEEEEecCCCCEEEEEcceecC--CCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEE
Q 007468 63 VPAPSPRSNCSLNINPLKETELILYGGEFYN--GNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIF 140 (602)
Q Consensus 63 ~~~P~~R~~~s~~~~~~~~~~iyv~GG~~~~--g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~ 140 (602)
.+.|.+|.+|+++++ +++||||||...+ .......+++++||+.+++|+.+++ +|.+|.+|++++++++|||+
T Consensus 30 ~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~ 104 (315)
T 4asc_A 30 LSSQVPKNHVSLVTK---ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP--LPSPRCLFGLGEALNSIYVV 104 (315)
T ss_dssp CCCCSCSSEEEEECT---TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC--BSSCEESCEEEEETTEEEEE
T ss_pred CCCCCCccceEEEEE---CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC--CCcchhceeEEEECCEEEEE
Confidence 345789999999998 8999999997432 2223456789999999999999976 67899999999999999999
Q ss_pred eCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCc
Q 007468 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (602)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~ 220 (602)
||...... ...++++|+||+.+++|+.+++ +|.+|++|++++++++||||||.... ...++++++||+.+++
T Consensus 105 GG~~~~~~---~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 105 GGREIKDG---ERCLDSVMCYDRLSFKWGESDP--LPYVVYGHTVLSHMDLVYVIGGKGSD---RKCLNKMCVYDPKKFE 176 (315)
T ss_dssp CCEESSTT---CCBCCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECCBCTT---SCBCCCEEEEETTTTE
T ss_pred eCCcCCCC---CcccceEEEECCCCCcEeECCC--CCCcccceeEEEECCEEEEEeCCCCC---CcccceEEEEeCCCCe
Confidence 99764211 1367999999999999999987 89999999999999999999998543 2368999999999999
Q ss_pred eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCcee
Q 007468 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300 (602)
Q Consensus 221 W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~ 300 (602)
|+.++++ |.+|.+|++++++++|||+||.... ..++++++||+.+++|+.+.++ |.+|.+|
T Consensus 177 W~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~ 237 (315)
T 4asc_A 177 WKELAPM-----QTARSLFGATVHDGRIIVAAGVTDT-----------GLTSSAEVYSITDNKWAPFEAF---PQERSSL 237 (315)
T ss_dssp EEECCCC-----SSCCBSCEEEEETTEEEEEEEECSS-----------SEEEEEEEEETTTTEEEEECCC---SSCCBSC
T ss_pred EEECCCC-----CCchhceEEEEECCEEEEEeccCCC-----------CccceEEEEECCCCeEEECCCC---CCcccce
Confidence 9999887 8899999999999999999998765 4688999999999999999764 8999999
Q ss_pred EEEEECCeEEEeccccccccccccccccccCeeEEEECCCCceEEe
Q 007468 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (602)
Q Consensus 301 s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l 346 (602)
++++++++||||||.+.............++++++||+.+++|+.+
T Consensus 238 ~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 238 SLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred eEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 9999999999999986532111112235689999999999999976
No 9
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=7.7e-42 Score=351.35 Aligned_cols=240 Identities=18% Similarity=0.279 Sum_probs=212.1
Q ss_pred ccCCCCCCCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEE
Q 007468 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIF 140 (602)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~ 140 (602)
...++|.+|.+|+++++ +++||||||.. + ...++++++||+.+++|+.++. +|.+|.+|++++++++|||+
T Consensus 44 ~~~~~p~~r~~~~~~~~---~~~lyv~GG~~--~--~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~ 114 (302)
T 2xn4_A 44 QVAELPSRRCRAGMVYM---AGLVFAVGGFN--G--SLRVRTVDSYDPVKDQWTSVAN--MRDRRSTLGAAVLNGLLYAV 114 (302)
T ss_dssp EECCCSSCCBSCEEEEE---TTEEEEESCBC--S--SSBCCCEEEEETTTTEEEEECC--CSSCCBSCEEEEETTEEEEE
T ss_pred EcccCCcccccceEEEE---CCEEEEEeCcC--C--CccccceEEECCCCCceeeCCC--CCccccceEEEEECCEEEEE
Confidence 44678999999999999 89999999963 2 2367899999999999999986 56899999999999999999
Q ss_pred eCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCc
Q 007468 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (602)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~ 220 (602)
||.... ..++++|+||+.+++|+.+++ +|.+|++|++++++++||||||..... ...++++++||+.+++
T Consensus 115 GG~~~~------~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~yd~~~~~ 184 (302)
T 2xn4_A 115 GGFDGS------TGLSSVEAYNIKSNEWFHVAP--MNTRRSSVGVGVVGGLLYAVGGYDVAS--RQCLSTVECYNATTNE 184 (302)
T ss_dssp EEECSS------CEEEEEEEEETTTTEEEEECC--CSSCCBSCEEEEETTEEEEECCEETTT--TEECCCEEEEETTTTE
T ss_pred cCCCCC------ccCceEEEEeCCCCeEeecCC--CCCcccCceEEEECCEEEEEeCCCCCC--CccccEEEEEeCCCCc
Confidence 998643 257899999999999999987 899999999999999999999986542 2357899999999999
Q ss_pred eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCcee
Q 007468 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300 (602)
Q Consensus 221 W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~ 300 (602)
|+.++++ |.+|.+|++++++++|||+||.... ...+++++||+.+++|+.+..+ |.+|.+|
T Consensus 185 W~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~~---~~~r~~~ 245 (302)
T 2xn4_A 185 WTYIAEM-----STRRSGAGVGVLNNLLYAVGGHDGP-----------LVRKSVEVYDPTTNAWRQVADM---NMCRRNA 245 (302)
T ss_dssp EEEECCC-----SSCCBSCEEEEETTEEEEECCBSSS-----------SBCCCEEEEETTTTEEEEECCC---SSCCBSC
T ss_pred EEECCCC-----ccccccccEEEECCEEEEECCCCCC-----------cccceEEEEeCCCCCEeeCCCC---CCccccC
Confidence 9999877 8899999999999999999998754 4678899999999999999764 7899999
Q ss_pred EEEEECCeEEEeccccccccccccccccccCeeEEEECCCCceEEeE
Q 007468 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (602)
Q Consensus 301 s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~ 347 (602)
++++++++||||||.+.. ..++++++||+.+++|..++
T Consensus 246 ~~~~~~~~i~v~GG~~~~---------~~~~~v~~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 246 GVCAVNGLLYVVGGDDGS---------CNLASVEYYNPTTDKWTVVS 283 (302)
T ss_dssp EEEEETTEEEEECCBCSS---------SBCCCEEEEETTTTEEEECS
T ss_pred eEEEECCEEEEECCcCCC---------cccccEEEEcCCCCeEEECC
Confidence 999999999999998642 35789999999999999876
No 10
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=2e-42 Score=358.80 Aligned_cols=250 Identities=16% Similarity=0.389 Sum_probs=209.9
Q ss_pred CCCCCCcceEEEEecCCCCEEEEEcceecCCCC--ceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEe
Q 007468 64 PAPSPRSNCSLNINPLKETELILYGGEFYNGNK--TYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFG 141 (602)
Q Consensus 64 ~~P~~R~~~s~~~~~~~~~~iyv~GG~~~~g~~--~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~G 141 (602)
+.|.+|.+|+++++ +++||||||...+... ....+++++||+.+++|..+++ +|.+|.+|++++++++|||+|
T Consensus 42 ~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~G 116 (318)
T 2woz_A 42 AEQIPRNHSSIVTQ---QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP--LPSARCLFGLGEVDDKIYVVA 116 (318)
T ss_dssp CTTSCSSEEEEECS---SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC--BSSCBCSCEEEEETTEEEEEE
T ss_pred CccCCccceEEEEE---CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC--CCccccccceEEECCEEEEEc
Confidence 45689999999988 8999999996432211 2244569999999999999976 678999999999999999999
Q ss_pred CccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCce
Q 007468 142 GEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (602)
Q Consensus 142 G~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W 221 (602)
|...... ..++++|+||+.+++|+.+++ +|.+|++|++++++++||||||.... ...++++++||+.+++|
T Consensus 117 G~~~~~~----~~~~~~~~yd~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 117 GKDLQTE----ASLDSVLCYDPVAAKWSEVKN--LPIKVYGHNVISHNGMIYCLGGKTDD---KKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp EEBTTTC----CEEEEEEEEETTTTEEEEECC--CSSCEESCEEEEETTEEEEECCEESS---SCBCCCEEEEETTTTEE
T ss_pred CccCCCC----cccceEEEEeCCCCCEeECCC--CCCcccccEEEEECCEEEEEcCCCCC---CCccceEEEEcCCCCEE
Confidence 9864222 367899999999999999987 89999999999999999999998643 23689999999999999
Q ss_pred EEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeE
Q 007468 222 QEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFS 301 (602)
Q Consensus 222 ~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s 301 (602)
+.++++ |.+|.+|++++++++|||+||.... ...+++++||+.+++|+.+.++ |.+|.+|+
T Consensus 188 ~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~ 248 (318)
T 2woz_A 188 KDLAPM-----KTPRSMFGVAIHKGKIVIAGGVTED-----------GLSASVEAFDLKTNKWEVMTEF---PQERSSIS 248 (318)
T ss_dssp EEECCC-----SSCCBSCEEEEETTEEEEEEEEETT-----------EEEEEEEEEETTTCCEEECCCC---SSCCBSCE
T ss_pred EECCCC-----CCCcccceEEEECCEEEEEcCcCCC-----------CccceEEEEECCCCeEEECCCC---CCcccceE
Confidence 999877 8899999999999999999998765 5788999999999999999764 88999999
Q ss_pred EEEECCeEEEeccccccccccccccccccCeeEEEECCCCceEEe
Q 007468 302 MCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (602)
Q Consensus 302 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l 346 (602)
+++++++||||||...............++++|+||+.+++|+.+
T Consensus 249 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 249 LVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 999999999999986532221112234689999999999999976
No 11
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=1.1e-41 Score=350.87 Aligned_cols=244 Identities=19% Similarity=0.263 Sum_probs=216.6
Q ss_pred eccCCCCCCCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEE
Q 007468 60 EDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYI 139 (602)
Q Consensus 60 ~~~~~~P~~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV 139 (602)
....++|.+|.+|+++++ +++||||||.. ...++++++||+.+++|..+++ +|.+|.+|++++++++|||
T Consensus 37 ~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~-----~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv 106 (306)
T 3ii7_A 37 TDIRCPFEKRRDAACVFW---DNVVYILGGSQ-----LFPIKRMDCYNVVKDSWYSKLG--PPTPRDSLAACAAEGKIYT 106 (306)
T ss_dssp EECCCCSCCCBSCEEEEE---TTEEEEECCBS-----SSBCCEEEEEETTTTEEEEEEC--CSSCCBSCEEEEETTEEEE
T ss_pred ecCCCCCcccceeEEEEE---CCEEEEEeCCC-----CCCcceEEEEeCCCCeEEECCC--CCccccceeEEEECCEEEE
Confidence 355678999999999999 89999999963 3367999999999999999977 5789999999999999999
Q ss_pred EeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCC
Q 007468 140 FGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (602)
Q Consensus 140 ~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~ 219 (602)
+||.... ...++++++||+.+++|+.+++ +|.+|.+|++++++++||||||.........+++++++||+.++
T Consensus 107 ~GG~~~~-----~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 179 (306)
T 3ii7_A 107 SGGSEVG-----NSALYLFECYDTRTESWHTKPS--MLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE 179 (306)
T ss_dssp ECCBBTT-----BSCCCCEEEEETTTTEEEEECC--CSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred ECCCCCC-----CcEeeeEEEEeCCCCceEeCCC--CcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence 9998633 2357899999999999999987 89999999999999999999998765433345899999999999
Q ss_pred ceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCce
Q 007468 220 KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299 (602)
Q Consensus 220 ~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~ 299 (602)
+|+.++++ |.+|.+|++++++++|||+||.... ..++++++||+.+++|+.+.++ |.+|.+
T Consensus 180 ~W~~~~~~-----p~~r~~~~~~~~~~~i~v~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~~---p~~r~~ 240 (306)
T 3ii7_A 180 TWTELCPM-----IEARKNHGLVFVKDKIFAVGGQNGL-----------GGLDNVEYYDIKLNEWKMVSPM---PWKGVT 240 (306)
T ss_dssp EEEEECCC-----SSCCBSCEEEEETTEEEEECCEETT-----------EEBCCEEEEETTTTEEEECCCC---SCCBSC
T ss_pred eEEECCCc-----cchhhcceEEEECCEEEEEeCCCCC-----------CCCceEEEeeCCCCcEEECCCC---CCCccc
Confidence 99999877 8899999999999999999998765 5678999999999999999754 889999
Q ss_pred eEEEEECCeEEEeccccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 300 FSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 300 ~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
|++++++++||||||.... ..++++++||+.+++|..++.
T Consensus 241 ~~~~~~~~~i~v~GG~~~~---------~~~~~~~~yd~~~~~W~~~~~ 280 (306)
T 3ii7_A 241 VKCAAVGSIVYVLAGFQGV---------GRLGHILEYNTETDKWVANSK 280 (306)
T ss_dssp CEEEEETTEEEEEECBCSS---------SBCCEEEEEETTTTEEEEEEE
T ss_pred eeEEEECCEEEEEeCcCCC---------eeeeeEEEEcCCCCeEEeCCC
Confidence 9999999999999998652 357899999999999999876
No 12
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=1.5e-41 Score=350.80 Aligned_cols=244 Identities=19% Similarity=0.291 Sum_probs=215.8
Q ss_pred eccCCCCCCCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEE
Q 007468 60 EDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYI 139 (602)
Q Consensus 60 ~~~~~~P~~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV 139 (602)
....++|.+|.+|+++++ +++||||||..........++++++||+.+++|+.+++ +|.+|..|++++++++|||
T Consensus 52 ~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv 126 (308)
T 1zgk_A 52 LRLADLQVPRSGLAGCVV---GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP--MSVPRNRIGVGVIDGHIYA 126 (308)
T ss_dssp EECCCCSSCCBSCEEEEE---TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCC--CSSCCBTCEEEEETTEEEE
T ss_pred eECCCCCcccccceEEEE---CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCC--CCcCccccEEEEECCEEEE
Confidence 345678999999999999 89999999974222334578999999999999999976 5689999999999999999
Q ss_pred EeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCC
Q 007468 140 FGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (602)
Q Consensus 140 ~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~ 219 (602)
+||.... ..++++++||+.+++|+.+++ +|.+|.+|++++++++||||||..... .++++++||+.++
T Consensus 127 ~GG~~~~------~~~~~~~~yd~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~----~~~~~~~yd~~~~ 194 (308)
T 1zgk_A 127 VGGSHGC------IHHNSVERYEPERDEWHLVAP--MLTRRIGVGVAVLNRLLYAVGGFDGTN----RLNSAECYYPERN 194 (308)
T ss_dssp ECCEETT------EECCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECCBCSSC----BCCCEEEEETTTT
T ss_pred EcCCCCC------cccccEEEECCCCCeEeECCC--CCccccceEEEEECCEEEEEeCCCCCC----cCceEEEEeCCCC
Confidence 9998653 357899999999999999987 899999999999999999999987643 3799999999999
Q ss_pred ceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCce
Q 007468 220 KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299 (602)
Q Consensus 220 ~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~ 299 (602)
+|+.++++ |.+|.+|++++++++|||+||.... ...+++++||+.+++|+.+.++ |.+|.+
T Consensus 195 ~W~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~v~~yd~~~~~W~~~~~~---p~~r~~ 255 (308)
T 1zgk_A 195 EWRMITAM-----NTIRSGAGVCVLHNCIYAAGGYDGQ-----------DQLNSVERYDVETETWTFVAPM---KHRRSA 255 (308)
T ss_dssp EEEECCCC-----SSCCBSCEEEEETTEEEEECCBCSS-----------SBCCCEEEEETTTTEEEECCCC---SSCCBS
T ss_pred eEeeCCCC-----CCccccceEEEECCEEEEEeCCCCC-----------CccceEEEEeCCCCcEEECCCC---CCCccc
Confidence 99999877 8899999999999999999998765 4578999999999999999754 889999
Q ss_pred eEEEEECCeEEEeccccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 300 FSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 300 ~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
|++++++++||||||.+. ...++++++||+.+++|+.++.
T Consensus 256 ~~~~~~~~~i~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~ 295 (308)
T 1zgk_A 256 LGITVHQGRIYVLGGYDG---------HTFLDSVECYDPDTDTWSEVTR 295 (308)
T ss_dssp CEEEEETTEEEEECCBCS---------SCBCCEEEEEETTTTEEEEEEE
T ss_pred eEEEEECCEEEEEcCcCC---------CcccceEEEEcCCCCEEeecCC
Confidence 999999999999999865 2457899999999999999876
No 13
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=3e-40 Score=339.05 Aligned_cols=239 Identities=18% Similarity=0.268 Sum_probs=212.3
Q ss_pred ccCCCCCCCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCc---EEEecCCCCCCCceeeEEEEECCEE
Q 007468 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE---WKVISSPNSPPPRSAHQAVSWKNYL 137 (602)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~---W~~l~~~~~P~~R~~hs~~~~~~~i 137 (602)
...++|.+|.+|+++++ +++||||||.. ....++++++||+.+++ |+.+++ +|.+|..|++++++++|
T Consensus 45 ~~~~~p~~r~~~~~~~~---~~~l~v~GG~~----~~~~~~~~~~~d~~~~~~~~W~~~~~--~p~~r~~~~~~~~~~~l 115 (301)
T 2vpj_A 45 FLPSITRKRRYVASVSL---HDRIYVIGGYD----GRSRLSSVECLDYTADEDGVWYSVAP--MNVRRGLAGATTLGDMI 115 (301)
T ss_dssp ECCCCSSCCBSCEEEEE---TTEEEEECCBC----SSCBCCCEEEEETTCCTTCCCEEECC--CSSCCBSCEEEEETTEE
T ss_pred eCCCCChhhccccEEEE---CCEEEEEcCCC----CCccCceEEEEECCCCCCCeeEECCC--CCCCccceeEEEECCEE
Confidence 45578889999999999 89999999963 22367899999999999 999976 57899999999999999
Q ss_pred EEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECC
Q 007468 138 YIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (602)
Q Consensus 138 yV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~ 217 (602)
||+||.... ..++++++||+.+++|+.+++ +|.+|.+|++++++++||||||..... .++++++||+.
T Consensus 116 yv~GG~~~~------~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~----~~~~~~~~d~~ 183 (301)
T 2vpj_A 116 YVSGGFDGS------RRHTSMERYDPNIDQWSMLGD--MQTAREGAGLVVASGVIYCLGGYDGLN----ILNSVEKYDPH 183 (301)
T ss_dssp EEECCBCSS------CBCCEEEEEETTTTEEEEEEE--CSSCCBSCEEEEETTEEEEECCBCSSC----BCCCEEEEETT
T ss_pred EEEcccCCC------cccceEEEEcCCCCeEEECCC--CCCCcccceEEEECCEEEEECCCCCCc----ccceEEEEeCC
Confidence 999998643 247899999999999999987 899999999999999999999986532 58999999999
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCC
Q 007468 218 QFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR 297 (602)
Q Consensus 218 t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R 297 (602)
+++|+.++++ |.+|.+|++++++++|||+||.... ...+++++||+.+++|+.+..+ |.+|
T Consensus 184 ~~~W~~~~~~-----p~~r~~~~~~~~~~~i~v~GG~~~~-----------~~~~~v~~yd~~~~~W~~~~~~---p~~r 244 (301)
T 2vpj_A 184 TGHWTNVTPM-----ATKRSGAGVALLNDHIYVVGGFDGT-----------AHLSSVEAYNIRTDSWTTVTSM---TTPR 244 (301)
T ss_dssp TTEEEEECCC-----SSCCBSCEEEEETTEEEEECCBCSS-----------SBCCCEEEEETTTTEEEEECCC---SSCC
T ss_pred CCcEEeCCCC-----CcccccceEEEECCEEEEEeCCCCC-----------cccceEEEEeCCCCcEEECCCC---CCcc
Confidence 9999999877 8899999999999999999998765 3478899999999999999754 8899
Q ss_pred ceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 298 AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 298 ~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
.+|++++++++||||||.... ..+++|++||+.+++|..++.
T Consensus 245 ~~~~~~~~~~~i~v~GG~~~~---------~~~~~v~~yd~~~~~W~~~~~ 286 (301)
T 2vpj_A 245 CYVGATVLRGRLYAIAGYDGN---------SLLSSIECYDPIIDSWEVVTS 286 (301)
T ss_dssp BSCEEEEETTEEEEECCBCSS---------SBEEEEEEEETTTTEEEEEEE
T ss_pred cceeEEEECCEEEEEcCcCCC---------cccccEEEEcCCCCeEEEcCC
Confidence 999999999999999998652 357899999999999999876
No 14
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=8.3e-39 Score=366.10 Aligned_cols=243 Identities=13% Similarity=0.216 Sum_probs=203.8
Q ss_pred CCCCCCCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEec-CC---CCCCCceeeEEEEE--CCE
Q 007468 63 VPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVIS-SP---NSPPPRSAHQAVSW--KNY 136 (602)
Q Consensus 63 ~~~P~~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~-~~---~~P~~R~~hs~~~~--~~~ 136 (602)
..+|..|++|+++ + ++.||||||... ..++++|+||+.+++|..++ ++ .+|.+|++|+++++ +++
T Consensus 383 ~~~p~rr~g~~~~-~---~~~iyv~GG~~~-----~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~ 453 (695)
T 2zwa_A 383 ECPINRKFGDVDV-A---GNDVFYMGGSNP-----YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQ 453 (695)
T ss_dssp CCTTCCBSCEEEE-C---SSCEEEECCBSS-----SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTE
T ss_pred CCCCCCceeEEEE-E---CCEEEEECCCCC-----CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCE
Confidence 4456667776554 5 799999999632 36799999999999999998 52 37899999999999 999
Q ss_pred EEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEE
Q 007468 137 LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFD 215 (602)
Q Consensus 137 iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd 215 (602)
|||+||..... ..++++|+||+.+++|+.+++ +|.+|++|+++++ +++||||||..... ++++||
T Consensus 454 lyv~GG~~~~~-----~~~~dv~~yd~~t~~W~~~~~--~p~~R~~h~~~~~~~~~iyv~GG~~~~~-------~v~~yd 519 (695)
T 2zwa_A 454 LLLIGGRKAPH-----QGLSDNWIFDMKTREWSMIKS--LSHTRFRHSACSLPDGNVLILGGVTEGP-------AMLLYN 519 (695)
T ss_dssp EEEECCBSSTT-----CBCCCCEEEETTTTEEEECCC--CSBCCBSCEEEECTTSCEEEECCBCSSC-------SEEEEE
T ss_pred EEEEcCCCCCC-----CccccEEEEeCCCCcEEECCC--CCCCcccceEEEEcCCEEEEECCCCCCC-------CEEEEE
Confidence 99999986542 257899999999999999987 8999999999997 99999999986531 899999
Q ss_pred CCCCceEEeccCCCCCCCCCccceeEEEeC---CEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCe------eEE
Q 007468 216 LDQFKWQEIKPRFGSMWPSPRSGFQFFVYQ---DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE------WSK 286 (602)
Q Consensus 216 ~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~---~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~------W~~ 286 (602)
+.+++|+.+++. +.+|.+|++|++++++ ++||||||.... ....++++|+||+.+++ |+.
T Consensus 520 ~~t~~W~~~~~~--g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~---------~~~~~~~v~~yd~~~~~w~~~~~W~~ 588 (695)
T 2zwa_A 520 VTEEIFKDVTPK--DEFFQNSLVSAGLEFDPVSKQGIILGGGFMD---------QTTVSDKAIIFKYDAENATEPITVIK 588 (695)
T ss_dssp TTTTEEEECCCS--SGGGGSCCBSCEEEEETTTTEEEEECCBCTT---------SSCBCCEEEEEEECTTCSSCCEEEEE
T ss_pred CCCCceEEccCC--CCCCCcccceeEEEEeCCCCEEEEECCcCCC---------CCeeeCcEEEEEccCCccccceEEEE
Confidence 999999999874 4458999999988875 899999998654 12567899999999999 899
Q ss_pred eecCCCCCCCCceeEEEEEC-CeEEEeccccccccccccccccccCeeEEEECCCCceEEeE
Q 007468 287 VKKIGMPPGPRAGFSMCVHK-KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (602)
Q Consensus 287 l~~~g~~P~~R~~~s~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~ 347 (602)
+..+ +|.+|.+|++++++ ++||||||...... ....++|++||+.+++|+.+.
T Consensus 589 ~~~~--p~~~R~~~~~~~~~~~~iyv~GG~~~~~~------~~~~~~v~~yd~~t~~W~~~~ 642 (695)
T 2zwa_A 589 KLQH--PLFQRYGSQIKYITPRKLLIVGGTSPSGL------FDRTNSIISLDPLSETLTSIP 642 (695)
T ss_dssp EEEC--GGGCCBSCEEEEEETTEEEEECCBCSSCC------CCTTTSEEEEETTTTEEEECC
T ss_pred cCCC--CCCCcccceEEEeCCCEEEEECCccCCCC------CCCCCeEEEEECCCCeEEEee
Confidence 8763 46899999999999 99999999864321 135899999999999999543
No 15
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=2.8e-36 Score=317.28 Aligned_cols=266 Identities=17% Similarity=0.213 Sum_probs=205.7
Q ss_pred eeccCCCC-CCCcceEEEEecCCCCEEEEEcceec-CCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCE
Q 007468 59 VEDNVPAP-SPRSNCSLNINPLKETELILYGGEFY-NGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNY 136 (602)
Q Consensus 59 ~~~~~~~P-~~R~~~s~~~~~~~~~~iyv~GG~~~-~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~ 136 (602)
|....++| .+|.+|+++++ +++||||||... .......++++++||+.+++|+.++++. |.+|.+|++++++++
T Consensus 45 W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-p~~r~~~~~~~~~~~ 120 (357)
T 2uvk_A 45 WTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA-PMGMAGHVTFVHNGK 120 (357)
T ss_dssp EEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC-SSCCSSEEEEEETTE
T ss_pred eeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC-CcccccceEEEECCE
Confidence 34556788 89999999999 899999999732 2223457899999999999999998866 799999999999999
Q ss_pred EEEEeCccCCCC----------------------------CCcceecCeEEEEECCCCcEEEcccCCCCCCC-cccEEEE
Q 007468 137 LYIFGGEFTSPN----------------------------QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR-SGHRMVL 187 (602)
Q Consensus 137 iyV~GG~~~~~~----------------------------~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R-~~h~~~~ 187 (602)
|||+||...... ...+..++++++||+.+++|+.+++ +|.+| .+|++++
T Consensus 121 iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~--~p~~~~~~~~~~~ 198 (357)
T 2uvk_A 121 AYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGE--SPWYGTAGAAVVN 198 (357)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEE--CSSCCCBSCEEEE
T ss_pred EEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCC--CCCCCcccccEEE
Confidence 999999753210 0001246899999999999999977 77665 4599999
Q ss_pred ECCEEEEEcCccCCCCCeeeeceEEEEEC--CCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCC-
Q 007468 188 YKHKIIVFGGFYDTLREVRYYNDLYVFDL--DQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQ- 264 (602)
Q Consensus 188 ~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~--~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~- 264 (602)
++++||||||..... ..++++++||+ .+++|+.+.+++. |.+|.+|++++++++|||+||.... .....
T Consensus 199 ~~~~iyv~GG~~~~~---~~~~~v~~~d~d~~~~~W~~~~~~~~---~~~~~~~~~~~~~~~iyv~GG~~~~--~~~~~~ 270 (357)
T 2uvk_A 199 KGDKTWLINGEAKPG---LRTDAVFELDFTGNNLKWNKLAPVSS---PDGVAGGFAGISNDSLIFAGGAGFK--GSRENY 270 (357)
T ss_dssp ETTEEEEECCEEETT---EECCCEEEEECC---CEEEECCCSST---TTCCBSCEEEEETTEEEEECCEECT--THHHHH
T ss_pred ECCEEEEEeeecCCC---cccCceEEEEecCCCCcEEecCCCCC---CcccccceEEEECCEEEEEcCcccc--CCcccc
Confidence 999999999986532 35789999987 8999999988732 5567788899999999999997643 00000
Q ss_pred -------CCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEeccccccccccccccccccCeeEEEE
Q 007468 265 -------SEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ 337 (602)
Q Consensus 265 -------~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd 337 (602)
......+.++++||+.+++|+.+..+ |.+|.+|++++++++||||||.+.. ...+++|++|+
T Consensus 271 ~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~--------~~~~~~v~~l~ 339 (357)
T 2uvk_A 271 QNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL---SQGRAYGVSLPWNNSLLIIGGETAG--------GKAVTDSVLIT 339 (357)
T ss_dssp HTTCSSTTTTCCCEECCEEEECC---CEEEEEC---SSCCBSSEEEEETTEEEEEEEECGG--------GCEEEEEEEEE
T ss_pred cccceeccccccceeeEEEEecCCCceeeCCCC---CCCcccceeEEeCCEEEEEeeeCCC--------CCEeeeEEEEE
Confidence 01123457899999999999999764 8899999999999999999998753 23579999999
Q ss_pred CCCCceEEeEec
Q 007468 338 LDNHRWYPLELR 349 (602)
Q Consensus 338 ~~t~~W~~l~~~ 349 (602)
+++++|..+.+.
T Consensus 340 ~~~~~~~~~~~~ 351 (357)
T 2uvk_A 340 VKDNKVTVQNLE 351 (357)
T ss_dssp C-CCSCEEEC--
T ss_pred EcCcEeEeeecc
Confidence 999999988773
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=1.1e-33 Score=323.83 Aligned_cols=241 Identities=15% Similarity=0.155 Sum_probs=202.1
Q ss_pred CCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcc-c---CCCCCCCcccEEEEE--CCEEE
Q 007468 120 NSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLN-L---KGCPSPRSGHRMVLY--KHKII 193 (602)
Q Consensus 120 ~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~-~---~~~p~~R~~h~~~~~--~~~Ly 193 (602)
..|++|++|+++ +++.|||+||... . .++++|+||+.+++|+.++ + ..+|.+|++|+++++ +++||
T Consensus 384 ~~p~rr~g~~~~-~~~~iyv~GG~~~---~----~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~ly 455 (695)
T 2zwa_A 384 CPINRKFGDVDV-AGNDVFYMGGSNP---Y----RVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLL 455 (695)
T ss_dssp CTTCCBSCEEEE-CSSCEEEECCBSS---S----BCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEE
T ss_pred CCCCCceeEEEE-ECCEEEEECCCCC---C----CcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEE
Confidence 355667666554 8999999999865 1 4789999999999999998 4 236999999999999 99999
Q ss_pred EEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceee
Q 007468 194 VFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHS 272 (602)
Q Consensus 194 v~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~ 272 (602)
||||..... ..++++|+||+.+++|+.++++ |.+|++|+++++ +++||||||+... .
T Consensus 456 v~GG~~~~~---~~~~dv~~yd~~t~~W~~~~~~-----p~~R~~h~~~~~~~~~iyv~GG~~~~-----------~--- 513 (695)
T 2zwa_A 456 LIGGRKAPH---QGLSDNWIFDMKTREWSMIKSL-----SHTRFRHSACSLPDGNVLILGGVTEG-----------P--- 513 (695)
T ss_dssp EECCBSSTT---CBCCCCEEEETTTTEEEECCCC-----SBCCBSCEEEECTTSCEEEECCBCSS-----------C---
T ss_pred EEcCCCCCC---CccccEEEEeCCCCcEEECCCC-----CCCcccceEEEEcCCEEEEECCCCCC-----------C---
Confidence 999987643 2589999999999999999877 899999999997 9999999999765 1
Q ss_pred eEEEEeCCCCeeEEeecCCCCCCCCceeEEEEEC---CeEEEeccccccccccccccccccCeeEEEECCCCc------e
Q 007468 273 DLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHK---KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR------W 343 (602)
Q Consensus 273 dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~---~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~------W 343 (602)
++++||+.+++|+.+.+.|..|.+|.+|++++++ ++||||||..... ...++++|+||+.+++ |
T Consensus 514 ~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~-------~~~~~~v~~yd~~~~~w~~~~~W 586 (695)
T 2zwa_A 514 AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQ-------TTVSDKAIIFKYDAENATEPITV 586 (695)
T ss_dssp SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTS-------SCBCCEEEEEEECTTCSSCCEEE
T ss_pred CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCC-------CeeeCcEEEEEccCCccccceEE
Confidence 8999999999999999877779999999988876 8999999985421 2467999999999999 6
Q ss_pred EEeEecCCCchhhhhcccccCCCCchhhhhccCchhhhhcccCccchhhhhhhhhhhcccccccccccCCCceeeccCce
Q 007468 344 YPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVL 423 (602)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (602)
+.+...
T Consensus 587 ~~~~~~-------------------------------------------------------------------------- 592 (695)
T 2zwa_A 587 IKKLQH-------------------------------------------------------------------------- 592 (695)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred EEcCCC--------------------------------------------------------------------------
Confidence 655540
Q ss_pred eeecCCCCCCccccccccccCCCCCcCCccCcccceeeec-CeEEEEeceEEecCeeeeecchhhcccCCCCccEEe
Q 007468 424 AAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGK-DTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCI 499 (602)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~-~~lyv~GG~~e~g~~~~~l~Dl~~ldl~~~~~W~~~ 499 (602)
.|.+|++|++++.+ ++|||+||....+. ...++++|+||+.+ ++|+.+
T Consensus 593 --------------------------p~~~R~~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~v~~yd~~t-~~W~~~ 641 (695)
T 2zwa_A 593 --------------------------PLFQRYGSQIKYITPRKLLIVGGTSPSGL-FDRTNSIISLDPLS-ETLTSI 641 (695)
T ss_dssp --------------------------GGGCCBSCEEEEEETTEEEEECCBCSSCC-CCTTTSEEEEETTT-TEEEEC
T ss_pred --------------------------CCCCcccceEEEeCCCEEEEECCccCCCC-CCCCCeEEEEECCC-CeEEEe
Confidence 26889999999999 99999999863321 13589999999999 999943
No 17
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.98 E-value=3e-32 Score=310.28 Aligned_cols=309 Identities=11% Similarity=0.019 Sum_probs=222.7
Q ss_pred CCCCcceEEEEecCCCCEEEEEcceecCC--CCceeeCcEEEEEcCCCcEEEecCCCCCCCceee--EEEE-ECCEEEEE
Q 007468 66 PSPRSNCSLNINPLKETELILYGGEFYNG--NKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAH--QAVS-WKNYLYIF 140 (602)
Q Consensus 66 P~~R~~~s~~~~~~~~~~iyv~GG~~~~g--~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~h--s~~~-~~~~iyV~ 140 (602)
|.||..|++++++. +++|||+||..... ......+.+++||+.+++|+.++.+ |.+|..| ++++ .+++|||+
T Consensus 183 ~~P~~~~~~av~~~-~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~--~~~~~~~~~~~~~~~~g~lyv~ 259 (656)
T 1k3i_A 183 DLPIVPAAAAIEPT-SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT--VTKHDMFCPGISMDGNGQIVVT 259 (656)
T ss_dssp ECSSCCSEEEEETT-TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE--ECSCCCSSCEEEECTTSCEEEE
T ss_pred cCCCCceeEEEEec-CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCccc--CCCCCCccccccCCCCCCEEEe
Confidence 34556777777643 58999999964321 1112345799999999999988764 3555544 3444 48999999
Q ss_pred eCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCC
Q 007468 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (602)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~ 219 (602)
||... .++++||+.+++|+.+++ +|.+|.+|+++++ +++||||||..... ..++++++||+.++
T Consensus 260 GG~~~----------~~v~~yd~~t~~W~~~~~--~~~~R~~~s~~~~~dg~iyv~GG~~~~~---~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 260 GGNDA----------KKTSLYDSSSDSWIPGPD--MQVARGYQSSATMSDGRVFTIGGSWSGG---VFEKNGEVYSPSSK 324 (656)
T ss_dssp CSSST----------TCEEEEEGGGTEEEECCC--CSSCCSSCEEEECTTSCEEEECCCCCSS---SCCCCEEEEETTTT
T ss_pred CCCCC----------CceEEecCcCCceeECCC--CCccccccceEEecCCeEEEEeCcccCC---cccccceEeCCCCC
Confidence 99743 369999999999999987 8999999999999 99999999954322 25789999999999
Q ss_pred ceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCC----CC
Q 007468 220 KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMP----PG 295 (602)
Q Consensus 220 ~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~----P~ 295 (602)
+|+.++......++.+|.. +++..+++||+|||.++... .....+++++||+.++.|......... +.
T Consensus 325 ~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~-------~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~ 396 (656)
T 1k3i_A 325 TWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLFGWKKGSVF-------QAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAP 396 (656)
T ss_dssp EEEEETTSCSGGGCCCCTT-GGGTTTCSCCEEECGGGCEE-------ECCSSSEEEEEECSTTCEEEEEEECEETTEECC
T ss_pred cceeCCCcccccccccccc-ceeecCCceEEEECCCCcEE-------EecCccceeeeecCCcceeecCCccccccccCC
Confidence 9999854321122455543 55567999999999876410 012356899999999998865332111 12
Q ss_pred CCceeEEEE---ECCeEEEeccccccccccccccccccC---eeEEEECCCCceEEeEecCCCchhhhhcccccCCCCch
Q 007468 296 PRAGFSMCV---HKKRALLFGGVVDMEMKGDVIMSLFLN---ELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSS 369 (602)
Q Consensus 296 ~R~~~s~~~---~~~~lyv~GG~~~~~~~~~~~~~~~~n---dv~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~ 369 (602)
++..+++++ ++++||||||...... ...++ .|++||+.++.|..+.. .
T Consensus 397 ~~~~~~av~~~~~~~~i~v~GG~~~~~~------~~~~~~~~~v~~yd~~~~~W~~~~~--~------------------ 450 (656)
T 1k3i_A 397 DAMCGNAVMYDAVKGKILTFGGSPDYQD------SDATTNAHIITLGEPGTSPNTVFAS--N------------------ 450 (656)
T ss_dssp CCBTCEEEEEETTTTEEEEECCBSSSSS------SBCCCCEEEEECCSTTSCCEEEECT--T------------------
T ss_pred CCCCCceEeccCCCCeEEEEeCCCCCCC------CCcCCcceEEEcCCCCCCCeeEEcc--C------------------
Confidence 334455553 4899999999753211 12234 79999999999997752 0
Q ss_pred hhhhccCchhhhhcccCccchhhhhhhhhhhcccccccccccCCCceeeccCceeeecCCCCCCccccccccccCCCCCc
Q 007468 370 ALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIV 449 (602)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (602)
.
T Consensus 451 -------------------------------------------------------------------------------~ 451 (656)
T 1k3i_A 451 -------------------------------------------------------------------------------G 451 (656)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred CCccCcccceeee-cCeEEEEeceEEec--CeeeeecchhhcccCCCCccEEeecCChhh
Q 007468 450 KPCGRINSCMVVG-KDTLYVYGGMMEIN--DQEITLDDLYSLNLSKLDEWKCIIPASESE 506 (602)
Q Consensus 450 ~P~~R~~~~~~v~-~~~lyv~GG~~e~g--~~~~~l~Dl~~ldl~~~~~W~~~~~~~~~~ 506 (602)
+|.+|..|+++++ +++|||+||..... +....++++++||+.+ ++|+.+.++....
T Consensus 452 mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t-~~W~~~~~~~~~R 510 (656)
T 1k3i_A 452 LYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ-DTFYKQNPNSIVR 510 (656)
T ss_dssp CSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG-TEEEECCCCSSCC
T ss_pred CCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC-CceeecCCCCCcc
Confidence 7999999999887 99999999975221 1123578999999988 9999988776653
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.97 E-value=8.8e-31 Score=298.19 Aligned_cols=259 Identities=10% Similarity=0.044 Sum_probs=183.4
Q ss_pred CCCCCCCcce--EEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEE
Q 007468 63 VPAPSPRSNC--SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYI 139 (602)
Q Consensus 63 ~~~P~~R~~~--s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV 139 (602)
..+|.+|..| +++++. +++|||+||.. . .++++||+.+++|..++. +|.+|..|+++++ +++|||
T Consensus 235 ~~~~~~~~~~~~~~~~~~--~g~lyv~GG~~--~------~~v~~yd~~t~~W~~~~~--~~~~R~~~s~~~~~dg~iyv 302 (656)
T 1k3i_A 235 TVTVTKHDMFCPGISMDG--NGQIVVTGGND--A------KKTSLYDSSSDSWIPGPD--MQVARGYQSSATMSDGRVFT 302 (656)
T ss_dssp EEEECSCCCSSCEEEECT--TSCEEEECSSS--T------TCEEEEEGGGTEEEECCC--CSSCCSSCEEEECTTSCEEE
T ss_pred cccCCCCCCccccccCCC--CCCEEEeCCCC--C------CceEEecCcCCceeECCC--CCccccccceEEecCCeEEE
Confidence 3355555444 455543 79999999952 1 379999999999999976 5689999999999 999999
Q ss_pred EeCccCCCCCCcceecCeEEEEECCCCcEEEcccCC---CCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEEC
Q 007468 140 FGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG---CPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDL 216 (602)
Q Consensus 140 ~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~---~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~ 216 (602)
+||..... ..++++++||+.+++|+.++..+ ++..|. ++++..+++||+|||.++........++++.||+
T Consensus 303 ~GG~~~~~-----~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~-~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~ 376 (656)
T 1k3i_A 303 IGGSWSGG-----VFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK-QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYT 376 (656)
T ss_dssp ECCCCCSS-----SCCCCEEEEETTTTEEEEETTSCSGGGCCCCT-TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEEC
T ss_pred EeCcccCC-----cccccceEeCCCCCcceeCCCccccccccccc-cceeecCCceEEEECCCCcEEEecCccceeeeec
Confidence 99953322 24789999999999999985321 344544 3556679999999998653211123679999999
Q ss_pred CCCceEEeccCCCCC--CCCCccceeEEE---eCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCC
Q 007468 217 DQFKWQEIKPRFGSM--WPSPRSGFQFFV---YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG 291 (602)
Q Consensus 217 ~t~~W~~v~~~~~~~--~P~~R~~~~~~~---~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g 291 (602)
.++.|.......... .+.++..+++++ ++++|||+||..... . .........+++||+.+++|+.+. .+
T Consensus 377 ~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~--~---~~~~~~~~~v~~yd~~~~~W~~~~-~~ 450 (656)
T 1k3i_A 377 SGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ--D---SDATTNAHIITLGEPGTSPNTVFA-SN 450 (656)
T ss_dssp STTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSS--S---SBCCCCEEEEECCSTTSCCEEEEC-TT
T ss_pred CCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCC--C---CCcCCcceEEEcCCCCCCCeeEEc-cC
Confidence 999987643321000 011334444443 489999999975320 0 000112237899999999999987 23
Q ss_pred CCCCCCceeEEEEE-CCeEEEeccccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 292 MPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 292 ~~P~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
.+|.+|..|+++++ +++|||+||....... .....++++++||+.+++|+.+..
T Consensus 451 ~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~---~~~~~~~~v~~ydp~t~~W~~~~~ 505 (656)
T 1k3i_A 451 GLYFARTFHTSVVLPDGSTFITGGQRRGIPF---EDSTPVFTPEIYVPEQDTFYKQNP 505 (656)
T ss_dssp CCSSCCBSCEEEECTTSCEEEECCBSBCCTT---CCCSBCCCCEEEEGGGTEEEECCC
T ss_pred CCCCCcccCCeEECCCCCEEEECCcccCcCc---CCCCcccceEEEcCCCCceeecCC
Confidence 45899999999988 9999999997542100 013457899999999999998665
No 19
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.97 E-value=0.0033 Score=64.10 Aligned_cols=208 Identities=13% Similarity=0.070 Sum_probs=119.9
Q ss_pred CCCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEE-EecCCCCCCCceeeEEEE-ECCEEEEEeCcc
Q 007468 67 SPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVS-WKNYLYIFGGEF 144 (602)
Q Consensus 67 ~~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~-~l~~~~~P~~R~~hs~~~-~~~~iyV~GG~~ 144 (602)
.....+.+++. ++++||.... .+.|.++|+.+.+.. .++.. ...+.+++ -++++||....
T Consensus 42 lg~~~~~i~~~---~~~lyv~~~~---------~~~v~viD~~t~~~~~~i~~~-----~~p~~i~~~~~g~lyv~~~~- 103 (328)
T 3dsm_A 42 LGDVAQSMVIR---DGIGWIVVNN---------SHVIFAIDINTFKEVGRITGF-----TSPRYIHFLSDEKAYVTQIW- 103 (328)
T ss_dssp CBSCEEEEEEE---TTEEEEEEGG---------GTEEEEEETTTCCEEEEEECC-----SSEEEEEEEETTEEEEEEBS-
T ss_pred cCccceEEEEE---CCEEEEEEcC---------CCEEEEEECcccEEEEEcCCC-----CCCcEEEEeCCCeEEEEECC-
Confidence 33444566666 7889988751 357899999988763 44321 12233344 57899998742
Q ss_pred CCCCCCcceecCeEEEEECCCCcEEE-cccCCCC-CCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceE
Q 007468 145 TSPNQERFHHYKDFWMLDLKTNQWEQ-LNLKGCP-SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (602)
Q Consensus 145 ~~~~~~~~~~~~dv~~yd~~t~~W~~-~~~~~~p-~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~ 222 (602)
.+.+++||+.+.+-.. ++..... ....-+.+++.+++|||..-- ..+.|.+||+.+.+..
T Consensus 104 ----------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~--------~~~~v~viD~~t~~~~ 165 (328)
T 3dsm_A 104 ----------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWS--------YQNRILKIDTETDKVV 165 (328)
T ss_dssp ----------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECT--------TCCEEEEEETTTTEEE
T ss_pred ----------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCC--------CCCEEEEEECCCCeEE
Confidence 2568999999987543 2221100 000234455578999998420 1367999999998754
Q ss_pred EeccCCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeE
Q 007468 223 EIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFS 301 (602)
Q Consensus 223 ~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s 301 (602)
..-.. + ..| +.+++. ++++|+....... .. ......+.++++|+.+.+....-.. |....-..
T Consensus 166 ~~i~~--g--~~p---~~i~~~~dG~l~v~~~~~~~--~~----~~~~~~~~v~~id~~t~~v~~~~~~---~~g~~p~~ 229 (328)
T 3dsm_A 166 DELTI--G--IQP---TSLVMDKYNKMWTITDGGYE--GS----PYGYEAPSLYRIDAETFTVEKQFKF---KLGDWPSE 229 (328)
T ss_dssp EEEEC--S--SCB---CCCEECTTSEEEEEBCCBCT--TC----SSCBCCCEEEEEETTTTEEEEEEEC---CTTCCCEE
T ss_pred EEEEc--C--CCc---cceEEcCCCCEEEEECCCcc--CC----ccccCCceEEEEECCCCeEEEEEec---CCCCCcee
Confidence 43222 1 222 223333 6888887643211 00 0001135799999998876643222 22222345
Q ss_pred EEEE--CCeEEEeccccccccccccccccccCeeEEEECCCCce
Q 007468 302 MCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (602)
Q Consensus 302 ~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W 343 (602)
+++. ++.||+..+ .|++||+.+.+.
T Consensus 230 la~~~d~~~lyv~~~-----------------~v~~~d~~t~~~ 256 (328)
T 3dsm_A 230 VQLNGTRDTLYWINN-----------------DIWRMPVEADRV 256 (328)
T ss_dssp EEECTTSCEEEEESS-----------------SEEEEETTCSSC
T ss_pred EEEecCCCEEEEEcc-----------------EEEEEECCCCce
Confidence 5555 567887543 488999887653
No 20
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.92 E-value=0.0009 Score=65.57 Aligned_cols=163 Identities=16% Similarity=0.159 Sum_probs=110.3
Q ss_pred CCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCC
Q 007468 123 PPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTL 202 (602)
Q Consensus 123 ~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~ 202 (602)
+.-+-+...+.++.||+-.|.... +.+.++|+.+++-..-.. +|..-.+.+++..+++||+....
T Consensus 19 ~~~ftqGL~~~~~~LyestG~~g~---------S~v~~vD~~tgkv~~~~~--l~~~~fgeGi~~~~~~ly~ltw~---- 83 (243)
T 3mbr_X 19 TTAFTEGLFYLRGHLYESTGETGR---------SSVRKVDLETGRILQRAE--VPPPYFGAGIVAWRDRLIQLTWR---- 83 (243)
T ss_dssp TTCCEEEEEEETTEEEEEECCTTS---------CEEEEEETTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESS----
T ss_pred CccccccEEEECCEEEEECCCCCC---------ceEEEEECCCCCEEEEEe--CCCCcceeEEEEeCCEEEEEEee----
Confidence 344556777778999999997542 578899999997655443 45566778889999999998653
Q ss_pred CCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCC
Q 007468 203 REVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (602)
Q Consensus 203 ~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (602)
.+.+++||+.+.+- +... |.+..+.+++..++.||+.-| +. .++.+|+.+.
T Consensus 84 -----~~~v~v~D~~tl~~--~~ti-----~~~~~Gwglt~dg~~L~vSdg-s~----------------~l~~iDp~t~ 134 (243)
T 3mbr_X 84 -----NHEGFVYDLATLTP--RARF-----RYPGEGWALTSDDSHLYMSDG-TA----------------VIRKLDPDTL 134 (243)
T ss_dssp -----SSEEEEEETTTTEE--EEEE-----ECSSCCCEEEECSSCEEEECS-SS----------------EEEEECTTTC
T ss_pred -----CCEEEEEECCcCcE--EEEE-----eCCCCceEEeeCCCEEEEECC-CC----------------eEEEEeCCCC
Confidence 46899999988653 3333 223356677766888999866 32 4999999987
Q ss_pred eeEEeecCCCCCCC-CceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCCce
Q 007468 283 EWSKVKKIGMPPGP-RAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (602)
Q Consensus 283 ~W~~l~~~g~~P~~-R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W 343 (602)
+-..--..+..+.+ +.---+...+++||+--- ..++|.+.|+.+.+=
T Consensus 135 ~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw--------------~s~~I~vIDp~tG~V 182 (243)
T 3mbr_X 135 QQVGSIKVTAGGRPLDNLNELEWVNGELLANVW--------------LTSRIARIDPASGKV 182 (243)
T ss_dssp CEEEEEECEETTEECCCEEEEEEETTEEEEEET--------------TTTEEEEECTTTCBE
T ss_pred eEEEEEEEccCCcccccceeeEEeCCEEEEEEC--------------CCCeEEEEECCCCCE
Confidence 65443222221222 122345566888885321 247899999999864
No 21
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.87 E-value=0.0036 Score=63.85 Aligned_cols=194 Identities=13% Similarity=0.057 Sum_probs=113.5
Q ss_pred eCcEEEEEcCCCcEEEecC---CCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcE-EEcccCC
Q 007468 100 YGDLYRYDVEKQEWKVISS---PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQW-EQLNLKG 175 (602)
Q Consensus 100 ~~dv~~yd~~~~~W~~l~~---~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W-~~~~~~~ 175 (602)
.+.|.+||+.++++...-. ...+.....+.+++.++++||.... .+.+.++|+.+.+- ..++.
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~-----------~~~v~viD~~t~~~~~~i~~-- 82 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN-----------SHVIFAIDINTFKEVGRITG-- 82 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG-----------GTEEEEEETTTCCEEEEEEC--
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcC-----------CCEEEEEECcccEEEEEcCC--
Confidence 3578999999998864210 0123444556677789999999752 25689999998876 33322
Q ss_pred CCCCCcccEEEE-ECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcC-
Q 007468 176 CPSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGG- 253 (602)
Q Consensus 176 ~p~~R~~h~~~~-~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG- 253 (602)
. ..-+.+++ -+++||+.... .+.|.+||+.+.+-...-+...+. .....-+.+++.+++|||..-
T Consensus 83 ~---~~p~~i~~~~~g~lyv~~~~---------~~~v~~iD~~t~~~~~~i~~g~~~-~~~~~p~~i~~~~~~lyv~~~~ 149 (328)
T 3dsm_A 83 F---TSPRYIHFLSDEKAYVTQIW---------DYRIFIINPKTYEITGYIECPDMD-MESGSTEQMVQYGKYVYVNCWS 149 (328)
T ss_dssp C---SSEEEEEEEETTEEEEEEBS---------CSEEEEEETTTTEEEEEEECTTCC-TTTCBCCCEEEETTEEEEEECT
T ss_pred C---CCCcEEEEeCCCeEEEEECC---------CCeEEEEECCCCeEEEEEEcCCcc-ccCCCcceEEEECCEEEEEcCC
Confidence 1 22234444 67899998642 367999999987654322221000 000022234457899999852
Q ss_pred ccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEeccccccccccccccccccCe
Q 007468 254 YSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNE 332 (602)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~nd 332 (602)
.. +.+.+||+.+.+....-..+..| +.+++. ++++|+..-....... .....+.
T Consensus 150 ~~----------------~~v~viD~~t~~~~~~i~~g~~p-----~~i~~~~dG~l~v~~~~~~~~~~----~~~~~~~ 204 (328)
T 3dsm_A 150 YQ----------------NRILKIDTETDKVVDELTIGIQP-----TSLVMDKYNKMWTITDGGYEGSP----YGYEAPS 204 (328)
T ss_dssp TC----------------CEEEEEETTTTEEEEEEECSSCB-----CCCEECTTSEEEEEBCCBCTTCS----SCBCCCE
T ss_pred CC----------------CEEEEEECCCCeEEEEEEcCCCc-----cceEEcCCCCEEEEECCCccCCc----cccCCce
Confidence 22 34899999988766544333222 233333 5787776532110000 0001367
Q ss_pred eEEEECCCCceE
Q 007468 333 LYGFQLDNHRWY 344 (602)
Q Consensus 333 v~~yd~~t~~W~ 344 (602)
|++||+.+.+..
T Consensus 205 v~~id~~t~~v~ 216 (328)
T 3dsm_A 205 LYRIDAETFTVE 216 (328)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCeEE
Confidence 999999887654
No 22
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.84 E-value=0.0055 Score=59.95 Aligned_cols=196 Identities=16% Similarity=0.147 Sum_probs=124.0
Q ss_pred CCCCCCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCc
Q 007468 64 PAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGE 143 (602)
Q Consensus 64 ~~P~~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~ 143 (602)
|.+..-+-+.+.+. ++.||+-.|.+ + -+.|.++|+.+++-..... +|..-++.+++..+++||+....
T Consensus 16 phd~~~ftqGL~~~---~~~LyestG~~--g-----~S~v~~vD~~tgkv~~~~~--l~~~~fgeGi~~~~~~ly~ltw~ 83 (243)
T 3mbr_X 16 PHDTTAFTEGLFYL---RGHLYESTGET--G-----RSSVRKVDLETGRILQRAE--VPPPYFGAGIVAWRDRLIQLTWR 83 (243)
T ss_dssp ECCTTCCEEEEEEE---TTEEEEEECCT--T-----SCEEEEEETTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESS
T ss_pred CCCCccccccEEEE---CCEEEEECCCC--C-----CceEEEEECCCCCEEEEEe--CCCCcceeEEEEeCCEEEEEEee
Confidence 44444455678887 78999999852 2 2478899999998765433 34556778888899999998653
Q ss_pred cCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceE-
Q 007468 144 FTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ- 222 (602)
Q Consensus 144 ~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~- 222 (602)
.+.+++||+.+.+-..- .+.+..+.+++.-+++||+.-| .+.++.+|+.+.+-.
T Consensus 84 -----------~~~v~v~D~~tl~~~~t----i~~~~~Gwglt~dg~~L~vSdg----------s~~l~~iDp~t~~~~~ 138 (243)
T 3mbr_X 84 -----------NHEGFVYDLATLTPRAR----FRYPGEGWALTSDDSHLYMSDG----------TAVIRKLDPDTLQQVG 138 (243)
T ss_dssp -----------SSEEEEEETTTTEEEEE----EECSSCCCEEEECSSCEEEECS----------SSEEEEECTTTCCEEE
T ss_pred -----------CCEEEEEECCcCcEEEE----EeCCCCceEEeeCCCEEEEECC----------CCeEEEEeCCCCeEEE
Confidence 36799999988764332 1223456777777888998765 357999999997643
Q ss_pred EeccCCCCCCCCCccc-eeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCC-CCC------
Q 007468 223 EIKPRFGSMWPSPRSG-FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG-MPP------ 294 (602)
Q Consensus 223 ~v~~~~~~~~P~~R~~-~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g-~~P------ 294 (602)
.+.... -+.+... -.+...+++||+--.. .+.|.+.|+.+.+-...-.++ ..|
T Consensus 139 ~I~V~~---~g~~~~~lNeLe~~~G~lyanvw~----------------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~ 199 (243)
T 3mbr_X 139 SIKVTA---GGRPLDNLNELEWVNGELLANVWL----------------TSRIARIDPASGKVVAWIDLQALVPDADALT 199 (243)
T ss_dssp EEECEE---TTEECCCEEEEEEETTEEEEEETT----------------TTEEEEECTTTCBEEEEEECGGGSTTTTSCC
T ss_pred EEEEcc---CCcccccceeeEEeCCEEEEEECC----------------CCeEEEEECCCCCEEEEEECCcCcccccccc
Confidence 333221 1222221 2234458888864322 356999999987644332221 111
Q ss_pred --CCCceeEEEEE--CCeEEEeccc
Q 007468 295 --GPRAGFSMCVH--KKRALLFGGV 315 (602)
Q Consensus 295 --~~R~~~s~~~~--~~~lyv~GG~ 315 (602)
..-...++++. .++|||.|-.
T Consensus 200 ~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 200 DSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp CTTSSCEEEEEEETTTTEEEEEETT
T ss_pred CCcCCceEEEEEcCCCCEEEEECCC
Confidence 11223455555 5789988864
No 23
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.79 E-value=0.023 Score=58.50 Aligned_cols=185 Identities=15% Similarity=0.163 Sum_probs=104.3
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCc--EEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~--W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv 158 (602)
++.||+... ...|++||+.+++ |+.-.... ...+.++.++.||+... ...+
T Consensus 103 ~~~v~v~~~----------~g~l~a~d~~tG~~~W~~~~~~~-----~~~~p~~~~~~v~v~~~------------~g~l 155 (376)
T 3q7m_A 103 GGHVYIGSE----------KAQVYALNTSDGTVAWQTKVAGE-----ALSRPVVSDGLVLIHTS------------NGQL 155 (376)
T ss_dssp TTEEEEEET----------TSEEEEEETTTCCEEEEEECSSC-----CCSCCEEETTEEEEECT------------TSEE
T ss_pred CCEEEEEcC----------CCEEEEEECCCCCEEEEEeCCCc-----eEcCCEEECCEEEEEcC------------CCeE
Confidence 677777543 1479999998774 76543211 12223455788877543 1468
Q ss_pred EEEECCCCc--EEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCc--eEEeccCCCCCCCC
Q 007468 159 WMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPS 234 (602)
Q Consensus 159 ~~yd~~t~~--W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~--W~~v~~~~~~~~P~ 234 (602)
+.||+.+.+ |+.-........+...+.++.++.||+ |.. ...++.||+.+.+ |+.-...+.+....
T Consensus 156 ~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~-g~~---------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 225 (376)
T 3q7m_A 156 QALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVV-GGD---------NGRVSAVLMEQGQMIWQQRISQATGSTEI 225 (376)
T ss_dssp EEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEE-CCT---------TTEEEEEETTTCCEEEEEECCC-------
T ss_pred EEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEE-EcC---------CCEEEEEECCCCcEEEEEecccCCCCccc
Confidence 899998775 876543211112223344556777776 322 2468999987754 77654331111000
Q ss_pred Cc---cceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCC--eeEEeecCCCCCCCCceeEEEEECCeE
Q 007468 235 PR---SGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRA 309 (602)
Q Consensus 235 ~R---~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g~~P~~R~~~s~~~~~~~l 309 (602)
.+ .....++.++.||+.+ ..+. +++||+.+. .|+.... ...+.++.++.|
T Consensus 226 ~~~~~~~~~p~~~~~~v~~~~-~~g~----------------l~~~d~~tG~~~w~~~~~--------~~~~~~~~~~~l 280 (376)
T 3q7m_A 226 DRLSDVDTTPVVVNGVVFALA-YNGN----------------LTALDLRSGQIMWKRELG--------SVNDFIVDGNRI 280 (376)
T ss_dssp ----CCCCCCEEETTEEEEEC-TTSC----------------EEEEETTTCCEEEEECCC--------CEEEEEEETTEE
T ss_pred ccccccCCCcEEECCEEEEEe-cCcE----------------EEEEECCCCcEEeeccCC--------CCCCceEECCEE
Confidence 11 1223345588888764 2333 889998765 5765321 123456668888
Q ss_pred EEeccccccccccccccccccCeeEEEECCCCc
Q 007468 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 310 yv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
|+.... ..|++||+.+.+
T Consensus 281 ~~~~~~---------------g~l~~~d~~tG~ 298 (376)
T 3q7m_A 281 YLVDQN---------------DRVMALTIDGGV 298 (376)
T ss_dssp EEEETT---------------CCEEEEETTTCC
T ss_pred EEEcCC---------------CeEEEEECCCCc
Confidence 886431 359999998764
No 24
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.74 E-value=0.0069 Score=59.87 Aligned_cols=190 Identities=10% Similarity=0.039 Sum_probs=117.9
Q ss_pred cceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCC
Q 007468 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQ 149 (602)
Q Consensus 70 ~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~ 149 (602)
+...+.+. ++.||+-.|.+ + -+.|.++|+.+++-..... +|..-++.+++..++.||+....
T Consensus 44 ftqGL~~~---~~~LyestG~~--g-----~S~v~~vD~~Tgkv~~~~~--l~~~~FgeGit~~g~~ly~ltw~------ 105 (262)
T 3nol_A 44 FTEGFFYR---NGYFYESTGLN--G-----RSSIRKVDIESGKTLQQIE--LGKRYFGEGISDWKDKIVGLTWK------ 105 (262)
T ss_dssp EEEEEEEE---TTEEEEEEEET--T-----EEEEEEECTTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESS------
T ss_pred ccceEEEE---CCEEEEECCCC--C-----CceEEEEECCCCcEEEEEe--cCCccceeEEEEeCCEEEEEEee------
Confidence 44666666 68999999852 1 2478899999998664433 34445677788889999999653
Q ss_pred CcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCce-EEeccCC
Q 007468 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW-QEIKPRF 228 (602)
Q Consensus 150 ~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W-~~v~~~~ 228 (602)
.+.+++||+.+.+-..-- +.+-.+.+++.-++.||+.-| .+.++.+|+.+.+- ..+....
T Consensus 106 -----~~~v~v~D~~t~~~~~ti----~~~~eG~glt~dg~~L~~SdG----------s~~i~~iDp~T~~v~~~I~V~~ 166 (262)
T 3nol_A 106 -----NGLGFVWNIRNLRQVRSF----NYDGEGWGLTHNDQYLIMSDG----------TPVLRFLDPESLTPVRTITVTA 166 (262)
T ss_dssp -----SSEEEEEETTTCCEEEEE----ECSSCCCCEEECSSCEEECCS----------SSEEEEECTTTCSEEEEEECEE
T ss_pred -----CCEEEEEECccCcEEEEE----ECCCCceEEecCCCEEEEECC----------CCeEEEEcCCCCeEEEEEEecc
Confidence 367999999887643221 223356677766778988755 25799999998653 3333321
Q ss_pred CCCCCCCccce-eEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCC-CC-------CCCCce
Q 007468 229 GSMWPSPRSGF-QFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG-MP-------PGPRAG 299 (602)
Q Consensus 229 ~~~~P~~R~~~-~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g-~~-------P~~R~~ 299 (602)
. +.+.... .+...+++||+---. .+.|.+.|+.+.+-...-... .. |..-.-
T Consensus 167 ~---g~~~~~lNELe~~~G~lyan~w~----------------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vl 227 (262)
T 3nol_A 167 H---GEELPELNELEWVDGEIFANVWQ----------------TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVL 227 (262)
T ss_dssp T---TEECCCEEEEEEETTEEEEEETT----------------SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCE
T ss_pred C---CccccccceeEEECCEEEEEEcc----------------CCeEEEEECCCCcEEEEEECCcCccccccccCcCCce
Confidence 0 1121111 233448888863222 356999999987654433221 11 111233
Q ss_pred eEEEEE--CCeEEEeccc
Q 007468 300 FSMCVH--KKRALLFGGV 315 (602)
Q Consensus 300 ~s~~~~--~~~lyv~GG~ 315 (602)
.++|+. .++|||.|-.
T Consensus 228 NGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 228 NGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEEEETTTTEEEEEETT
T ss_pred EEEEEcCCCCEEEEECCC
Confidence 556665 5788888764
No 25
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.67 E-value=0.016 Score=57.49 Aligned_cols=202 Identities=11% Similarity=0.021 Sum_probs=121.0
Q ss_pred cceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCC
Q 007468 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQ 149 (602)
Q Consensus 70 ~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~ 149 (602)
+-+.+.+.+ ++.||+..|.. + .+.|.++|+.+++-..... ++...++++++..++.||+..-.
T Consensus 22 f~~Gl~~~~--dg~Lyvstg~~--~-----~s~v~~iD~~tg~v~~~i~--l~~~~fgeGi~~~g~~lyv~t~~------ 84 (266)
T 2iwa_A 22 FTQGLVYAE--NDTLFESTGLY--G-----RSSVRQVALQTGKVENIHK--MDDSYFGEGLTLLNEKLYQVVWL------ 84 (266)
T ss_dssp CEEEEEECS--TTEEEEEECST--T-----TCEEEEEETTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEETT------
T ss_pred CcccEEEeC--CCeEEEECCCC--C-----CCEEEEEECCCCCEEEEEe--cCCCcceEEEEEeCCEEEEEEec------
Confidence 346777775 47999987731 1 2579999999998664322 23344666778889999999642
Q ss_pred CcceecCeEEEEECCCCcEE-EcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCce-EEeccC
Q 007468 150 ERFHHYKDFWMLDLKTNQWE-QLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW-QEIKPR 227 (602)
Q Consensus 150 ~~~~~~~dv~~yd~~t~~W~-~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W-~~v~~~ 227 (602)
.+.+++||+.+.+=. .++. + .-.+.+++.-+++||+.-| .+.++.+|+.+.+- ..+...
T Consensus 85 -----~~~v~viD~~t~~v~~~i~~---g-~~~g~glt~Dg~~l~vs~g----------s~~l~viD~~t~~v~~~I~Vg 145 (266)
T 2iwa_A 85 -----KNIGFIYDRRTLSNIKNFTH---Q-MKDGWGLATDGKILYGSDG----------TSILYEIDPHTFKLIKKHNVK 145 (266)
T ss_dssp -----CSEEEEEETTTTEEEEEEEC---C-SSSCCEEEECSSSEEEECS----------SSEEEEECTTTCCEEEEEECE
T ss_pred -----CCEEEEEECCCCcEEEEEEC---C-CCCeEEEEECCCEEEEECC----------CCeEEEEECCCCcEEEEEEEC
Confidence 367999999887532 2222 1 1234445555678998754 36899999998653 333322
Q ss_pred CCCCCCCCcc-ceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecC-CC--------CCCCC
Q 007468 228 FGSMWPSPRS-GFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI-GM--------PPGPR 297 (602)
Q Consensus 228 ~~~~~P~~R~-~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~-g~--------~P~~R 297 (602)
..+.|.. -..+...+++||+--.. .+.|.+.|+.+.+-...-.. |. .|..-
T Consensus 146 ---~~~~p~~~~nele~~dg~lyvn~~~----------------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~ 206 (266)
T 2iwa_A 146 ---YNGHRVIRLNELEYINGEVWANIWQ----------------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDID 206 (266)
T ss_dssp ---ETTEECCCEEEEEEETTEEEEEETT----------------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCC
T ss_pred ---CCCcccccceeEEEECCEEEEecCC----------------CCeEEEEECCCCcEEEEEECCCcccccccccccccC
Confidence 0011211 11333347888865332 34699999988754332221 11 01111
Q ss_pred ceeEEEEE--CCeEEEeccccccccccccccccccCeeEEEECCC
Q 007468 298 AGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (602)
Q Consensus 298 ~~~s~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t 340 (602)
.-.++++. ++++||.|+. .+.|++.++..
T Consensus 207 v~nGIa~~~~~~~lfVTgk~--------------~~~v~~i~l~~ 237 (266)
T 2iwa_A 207 VLNGIAWDQENKRIFVTGKL--------------WPKLFEIKLHL 237 (266)
T ss_dssp CEEEEEEETTTTEEEEEETT--------------CSEEEEEEEEE
T ss_pred ceEEEEEcCCCCEEEEECCC--------------CCeEEEEEEec
Confidence 23455665 5689998876 35677777544
No 26
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.65 E-value=0.023 Score=58.42 Aligned_cols=193 Identities=12% Similarity=0.103 Sum_probs=107.9
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCC--cEEEecCCCCC-----CCceeeEEEEECCEEEEEeCccCCCCCCcce
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSP-----PPRSAHQAVSWKNYLYIFGGEFTSPNQERFH 153 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~--~W~~l~~~~~P-----~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~ 153 (602)
++.||+.... ..|++||+.++ .|+.-.....+ ......+.++.++.||+...
T Consensus 53 ~~~v~~~~~~----------g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~----------- 111 (376)
T 3q7m_A 53 DNVVYAADRA----------GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSE----------- 111 (376)
T ss_dssp TTEEEEECTT----------SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEET-----------
T ss_pred CCEEEEEcCC----------CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcC-----------
Confidence 7888887541 37899999866 47754321110 12333445556888888643
Q ss_pred ecCeEEEEECCCC--cEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCc--eEEeccCCC
Q 007468 154 HYKDFWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFG 229 (602)
Q Consensus 154 ~~~dv~~yd~~t~--~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~--W~~v~~~~~ 229 (602)
...++.||..+. .|+.-... ......++.++.||+..+ ...++.||+.+.+ |+.-...+.
T Consensus 112 -~g~l~a~d~~tG~~~W~~~~~~-----~~~~~p~~~~~~v~v~~~----------~g~l~~~d~~tG~~~W~~~~~~~~ 175 (376)
T 3q7m_A 112 -KAQVYALNTSDGTVAWQTKVAG-----EALSRPVVSDGLVLIHTS----------NGQLQALNEADGAVKWTVNLDMPS 175 (376)
T ss_dssp -TSEEEEEETTTCCEEEEEECSS-----CCCSCCEEETTEEEEECT----------TSEEEEEETTTCCEEEEEECCC--
T ss_pred -CCEEEEEECCCCCEEEEEeCCC-----ceEcCCEEECCEEEEEcC----------CCeEEEEECCCCcEEEEEeCCCCc
Confidence 146899999877 47654321 112223556888887543 2469999998765 876543310
Q ss_pred CCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCC--eeEEeecC--CCCCCCC---ceeEE
Q 007468 230 SMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKI--GMPPGPR---AGFSM 302 (602)
Q Consensus 230 ~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~--g~~P~~R---~~~s~ 302 (602)
...+...+.++.++.||+ |...+ .++.||+.+. .|+.-... +.....| ...+.
T Consensus 176 ---~~~~~~~~~~~~~~~v~~-g~~~g----------------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p 235 (376)
T 3q7m_A 176 ---LSLRGESAPTTAFGAAVV-GGDNG----------------RVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTP 235 (376)
T ss_dssp ------CCCCCCEEETTEEEE-CCTTT----------------EEEEEETTTCCEEEEEECCC-----------CCCCCC
T ss_pred ---eeecCCCCcEEECCEEEE-EcCCC----------------EEEEEECCCCcEEEEEecccCCCCcccccccccCCCc
Confidence 111222334455777776 33332 3888998654 57765321 0000011 22334
Q ss_pred EEECCeEEEeccccccccccccccccccCeeEEEECCCC--ceEE
Q 007468 303 CVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWYP 345 (602)
Q Consensus 303 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~--~W~~ 345 (602)
++.++.+|+.+. -..|++||+.+. .|..
T Consensus 236 ~~~~~~v~~~~~---------------~g~l~~~d~~tG~~~w~~ 265 (376)
T 3q7m_A 236 VVVNGVVFALAY---------------NGNLTALDLRSGQIMWKR 265 (376)
T ss_dssp EEETTEEEEECT---------------TSCEEEEETTTCCEEEEE
T ss_pred EEECCEEEEEec---------------CcEEEEEECCCCcEEeec
Confidence 556788877542 134899998776 4654
No 27
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.51 E-value=0.0086 Score=59.27 Aligned_cols=187 Identities=14% Similarity=0.088 Sum_probs=115.0
Q ss_pred cceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCC
Q 007468 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQ 149 (602)
Q Consensus 70 ~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~ 149 (602)
+...+.+. ++.||+..|. ...|.+||+.+++-.... +|..-++.+++..++.||+....
T Consensus 56 ftqGL~~~---~~~Ly~stG~---------~g~v~~iD~~Tgkv~~~~---l~~~~FgeGit~~g~~Ly~ltw~------ 114 (268)
T 3nok_A 56 FTQGLVFH---QGHFFESTGH---------QGTLRQLSLESAQPVWME---RLGNIFAEGLASDGERLYQLTWT------ 114 (268)
T ss_dssp CEEEEEEE---TTEEEEEETT---------TTEEEECCSSCSSCSEEE---ECTTCCEEEEEECSSCEEEEESS------
T ss_pred ccceEEEE---CCEEEEEcCC---------CCEEEEEECCCCcEEeEE---CCCCcceeEEEEeCCEEEEEEcc------
Confidence 44667766 7899999984 234889999988654332 23444667788889999998653
Q ss_pred CcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceE-EeccCC
Q 007468 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-EIKPRF 228 (602)
Q Consensus 150 ~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~-~v~~~~ 228 (602)
.+.+++||+.+.+-..-- +.+-.+.+++.-+++||+.-| .+.++.+|+.+.+-. .+....
T Consensus 115 -----~~~v~V~D~~Tl~~~~ti----~~~~eGwGLt~Dg~~L~vSdG----------s~~l~~iDp~T~~v~~~I~V~~ 175 (268)
T 3nok_A 115 -----EGLLFTWSGMPPQRERTT----RYSGEGWGLCYWNGKLVRSDG----------GTMLTFHEPDGFALVGAVQVKL 175 (268)
T ss_dssp -----SCEEEEEETTTTEEEEEE----ECSSCCCCEEEETTEEEEECS----------SSEEEEECTTTCCEEEEEECEE
T ss_pred -----CCEEEEEECCcCcEEEEE----eCCCceeEEecCCCEEEEECC----------CCEEEEEcCCCCeEEEEEEeCC
Confidence 367999999987643221 223346677777889999865 368999999997643 233221
Q ss_pred CCCCCCCccc-eeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCC---------CCCCCCc
Q 007468 229 GSMWPSPRSG-FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG---------MPPGPRA 298 (602)
Q Consensus 229 ~~~~P~~R~~-~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g---------~~P~~R~ 298 (602)
-+.+... -.+...+++||+--- ..+.|.+.|+.+.+-...-..+ ..+..-.
T Consensus 176 ---~g~~v~~lNeLe~~dG~lyanvw----------------~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~v 236 (268)
T 3nok_A 176 ---RGQPVELINELECANGVIYANIW----------------HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAV 236 (268)
T ss_dssp ---TTEECCCEEEEEEETTEEEEEET----------------TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCC
T ss_pred ---CCcccccccccEEeCCEEEEEEC----------------CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCc
Confidence 0222111 123344888886321 2356999999987543332211 0111112
Q ss_pred eeEEEEE--CCeEEEeccc
Q 007468 299 GFSMCVH--KKRALLFGGV 315 (602)
Q Consensus 299 ~~s~~~~--~~~lyv~GG~ 315 (602)
.-++++. .++|||.|-.
T Consensus 237 lNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 237 LNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp EEEEEECTTTCCEEEEETT
T ss_pred eEEEEEcCCCCEEEEeCCC
Confidence 3445555 5789888754
No 28
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.42 E-value=0.0041 Score=61.52 Aligned_cols=161 Identities=11% Similarity=0.025 Sum_probs=103.3
Q ss_pred eeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCe
Q 007468 126 SAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV 205 (602)
Q Consensus 126 ~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~ 205 (602)
+.....+.++.||+..|... -+.+.++|+.+.+-..--+ ++..-++.+++..+++||+....
T Consensus 44 ftqGL~~~~~~LyestG~~g---------~S~v~~vD~~Tgkv~~~~~--l~~~~FgeGit~~g~~ly~ltw~------- 105 (262)
T 3nol_A 44 FTEGFFYRNGYFYESTGLNG---------RSSIRKVDIESGKTLQQIE--LGKRYFGEGISDWKDKIVGLTWK------- 105 (262)
T ss_dssp EEEEEEEETTEEEEEEEETT---------EEEEEEECTTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESS-------
T ss_pred ccceEEEECCEEEEECCCCC---------CceEEEEECCCCcEEEEEe--cCCccceeEEEEeCCEEEEEEee-------
Confidence 33455556899999998643 2568899999997654433 44445667788899999998653
Q ss_pred eeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeE
Q 007468 206 RYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (602)
Q Consensus 206 ~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (602)
.+.+++||+.+.+-.. .. +.+-.+.+++..++.||+.-| + +.++.+|+.+.+-.
T Consensus 106 --~~~v~v~D~~t~~~~~--ti-----~~~~eG~glt~dg~~L~~SdG-s----------------~~i~~iDp~T~~v~ 159 (262)
T 3nol_A 106 --NGLGFVWNIRNLRQVR--SF-----NYDGEGWGLTHNDQYLIMSDG-T----------------PVLRFLDPESLTPV 159 (262)
T ss_dssp --SSEEEEEETTTCCEEE--EE-----ECSSCCCCEEECSSCEEECCS-S----------------SEEEEECTTTCSEE
T ss_pred --CCEEEEEECccCcEEE--EE-----ECCCCceEEecCCCEEEEECC-C----------------CeEEEEcCCCCeEE
Confidence 3689999998875432 22 222355666666888888765 2 34999999987544
Q ss_pred EeecCCCCCCC-CceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCCceE
Q 007468 286 KVKKIGMPPGP-RAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (602)
Q Consensus 286 ~l~~~g~~P~~-R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~ 344 (602)
.--..+.-+.+ +.---+...+++||+-- + ..+.|.+.|+.+.+=.
T Consensus 160 ~~I~V~~~g~~~~~lNELe~~~G~lyan~-w-------------~~~~I~vIDp~tG~V~ 205 (262)
T 3nol_A 160 RTITVTAHGEELPELNELEWVDGEIFANV-W-------------QTNKIVRIDPETGKVT 205 (262)
T ss_dssp EEEECEETTEECCCEEEEEEETTEEEEEE-T-------------TSSEEEEECTTTCBEE
T ss_pred EEEEeccCCccccccceeEEECCEEEEEE-c-------------cCCeEEEEECCCCcEE
Confidence 33221110111 11112455688888521 1 2478999999998643
No 29
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.25 E-value=0.025 Score=56.13 Aligned_cols=160 Identities=13% Similarity=0.105 Sum_probs=100.0
Q ss_pred eeEEEEEC-CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCe
Q 007468 127 AHQAVSWK-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV 205 (602)
Q Consensus 127 ~hs~~~~~-~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~ 205 (602)
-|.+++.+ +.||+..|... .+.+.++|+.+++-...-+ ++....+++++..+++||+..-.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~---------~s~v~~iD~~tg~v~~~i~--l~~~~fgeGi~~~g~~lyv~t~~------- 84 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYG---------RSSVRQVALQTGKVENIHK--MDDSYFGEGLTLLNEKLYQVVWL------- 84 (266)
T ss_dssp EEEEEECSTTEEEEEECSTT---------TCEEEEEETTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEETT-------
T ss_pred cccEEEeCCCeEEEECCCCC---------CCEEEEEECCCCCEEEEEe--cCCCcceEEEEEeCCEEEEEEec-------
Confidence 46666665 89999887432 2579999999998654333 34444566778889999998543
Q ss_pred eeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeE
Q 007468 206 RYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (602)
Q Consensus 206 ~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (602)
.+.+++||+.+.+ .+...+.+ . -.+.+++.-+.++|+.-| + +.++.+|+.+.+-.
T Consensus 85 --~~~v~viD~~t~~--v~~~i~~g-~---~~g~glt~Dg~~l~vs~g-s----------------~~l~viD~~t~~v~ 139 (266)
T 2iwa_A 85 --KNIGFIYDRRTLS--NIKNFTHQ-M---KDGWGLATDGKILYGSDG-T----------------SILYEIDPHTFKLI 139 (266)
T ss_dssp --CSEEEEEETTTTE--EEEEEECC-S---SSCCEEEECSSSEEEECS-S----------------SEEEEECTTTCCEE
T ss_pred --CCEEEEEECCCCc--EEEEEECC-C---CCeEEEEECCCEEEEECC-C----------------CeEEEEECCCCcEE
Confidence 4689999998764 33333111 1 234445555778998764 2 34999999887644
Q ss_pred EeecCCCCCCCC-ceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCCce
Q 007468 286 KVKKIGMPPGPR-AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (602)
Q Consensus 286 ~l~~~g~~P~~R-~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W 343 (602)
..-..+..+.+. .-..+.+.+++||+--. ..+.|.+.|+.+++=
T Consensus 140 ~~I~Vg~~~~p~~~~nele~~dg~lyvn~~--------------~~~~V~vID~~tg~V 184 (266)
T 2iwa_A 140 KKHNVKYNGHRVIRLNELEYINGEVWANIW--------------QTDCIARISAKDGTL 184 (266)
T ss_dssp EEEECEETTEECCCEEEEEEETTEEEEEET--------------TSSEEEEEETTTCCE
T ss_pred EEEEECCCCcccccceeEEEECCEEEEecC--------------CCCeEEEEECCCCcE
Confidence 432222211111 12244455888876422 147899999998753
No 30
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.04 E-value=0.16 Score=49.37 Aligned_cols=199 Identities=7% Similarity=-0.045 Sum_probs=107.1
Q ss_pred ceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCC
Q 007468 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (602)
Q Consensus 71 ~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~ 149 (602)
-+++++.+ ++.|||... ..+.|++||+. ..+..+..+. ....-+++++. ++.|||....
T Consensus 22 p~~i~~d~--~g~l~v~~~---------~~~~v~~~~~~-~~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~------ 81 (300)
T 2qc5_A 22 PYGITSSE--DGKVWFTQH---------KANKISSLDQS-GRIKEFEVPT--PDAKVMCLIVSSLGDIWFTENG------ 81 (300)
T ss_dssp EEEEEECT--TSCEEEEET---------TTTEEEEECTT-SCEEEEECSS--TTCCEEEEEECTTSCEEEEETT------
T ss_pred cceeeECC--CCCEEEEcC---------CCCeEEEECCC-CceEEEECCC--CCCcceeEEECCCCCEEEEecC------
Confidence 34455544 678888653 12468899988 7776654321 11223333333 4678886532
Q ss_pred CcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCC
Q 007468 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (602)
Q Consensus 150 ~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~ 228 (602)
...+++||+. .++..+... .....-+++++. ++.||+.... ...+++||+. .....+...
T Consensus 82 -----~~~v~~~d~~-g~~~~~~~~--~~~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~~~~-g~~~~~~~~- 142 (300)
T 2qc5_A 82 -----ANKIGKLSKK-GGFTEYPLP--QPDSGPYGITEGLNGDIWFTQLN---------GDRIGKLTAD-GTIYEYDLP- 142 (300)
T ss_dssp -----TTEEEEECTT-SCEEEEECS--STTCCEEEEEECSTTCEEEEETT---------TTEEEEECTT-SCEEEEECS-
T ss_pred -----CCeEEEECCC-CCeEEecCC--CCCCCCccceECCCCCEEEEccC---------CCeEEEECCC-CCEEEccCC-
Confidence 2458899988 766654331 111222344443 5788876432 2468889987 655544322
Q ss_pred CCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-C
Q 007468 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-K 306 (602)
Q Consensus 229 ~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~ 306 (602)
.....-+++++. ++.||+...... .+++|++ +.++..+...+ ....-.++++. +
T Consensus 143 ----~~~~~~~~i~~d~~g~l~v~~~~~~----------------~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~d~~ 198 (300)
T 2qc5_A 143 ----NKGSYPAFITLGSDNALWFTENQNN----------------SIGRITN-TGKLEEYPLPT---NAAAPVGITSGND 198 (300)
T ss_dssp ----STTCCEEEEEECTTSSEEEEETTTT----------------EEEEECT-TCCEEEEECSS---TTCCEEEEEECTT
T ss_pred ----CCCCCceeEEECCCCCEEEEecCCC----------------eEEEECC-CCcEEEeeCCC---CCCCcceEEECCC
Confidence 011122333333 567888654322 3889998 66666553211 11122344443 5
Q ss_pred CeEEEeccccccccccccccccccCeeEEEECCCCceEEeE
Q 007468 307 KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (602)
Q Consensus 307 ~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~ 347 (602)
+.||+.... .+.|++|++ +..+..+.
T Consensus 199 g~l~v~~~~--------------~~~i~~~~~-~g~~~~~~ 224 (300)
T 2qc5_A 199 GALWFVEIM--------------GNKIGRITT-TGEISEYD 224 (300)
T ss_dssp SSEEEEETT--------------TTEEEEECT-TCCEEEEE
T ss_pred CCEEEEccC--------------CCEEEEEcC-CCcEEEEE
Confidence 678775321 235888988 56666554
No 31
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.03 E-value=0.017 Score=59.22 Aligned_cols=185 Identities=12% Similarity=0.033 Sum_probs=104.8
Q ss_pred CEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEE
Q 007468 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFW 159 (602)
Q Consensus 82 ~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~ 159 (602)
..+|+.|+. -+.|++||+.+++....-... ..-++++.. +..||+.|+.. ..+.
T Consensus 2 ~~l~vs~~~---------d~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~d-----------~~i~ 57 (391)
T 1l0q_A 2 TFAYIANSE---------SDNISVIDVTSNKVTATIPVG----SNPMGAVISPDGTKVYVANAHS-----------NDVS 57 (391)
T ss_dssp EEEEEEETT---------TTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEEGGG-----------TEEE
T ss_pred CEEEEEcCC---------CCEEEEEECCCCeEEEEeecC----CCcceEEECCCCCEEEEECCCC-----------CeEE
Confidence 357777762 247899999988665432211 112333332 34677777542 4688
Q ss_pred EEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCcc
Q 007468 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237 (602)
Q Consensus 160 ~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~ 237 (602)
+||+.+.+....-. .+. .-.+++.. +.+||+.|.. ...|++||+.+.+....... ...
T Consensus 58 v~d~~~~~~~~~~~--~~~--~v~~~~~spdg~~l~~~~~~---------~~~v~v~d~~~~~~~~~~~~-------~~~ 117 (391)
T 1l0q_A 58 IIDTATNNVIATVP--AGS--SPQGVAVSPDGKQVYVTNMA---------SSTLSVIDTTSNTVAGTVKT-------GKS 117 (391)
T ss_dssp EEETTTTEEEEEEE--CSS--SEEEEEECTTSSEEEEEETT---------TTEEEEEETTTTEEEEEEEC-------SSS
T ss_pred EEECCCCeEEEEEE--CCC--CccceEECCCCCEEEEEECC---------CCEEEEEECCCCeEEEEEeC-------CCC
Confidence 99998887654332 111 22233332 3456666543 25699999998765443332 111
Q ss_pred ceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE--CCeEEEec
Q 007468 238 GFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFG 313 (602)
Q Consensus 238 ~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~--~~~lyv~G 313 (602)
-.+++.. +..||+.++..+. +++||+.+.+....-..+. .-..+++. +..||+.+
T Consensus 118 ~~~~~~s~dg~~l~~~~~~~~~----------------v~~~d~~~~~~~~~~~~~~-----~~~~~~~~~dg~~l~~~~ 176 (391)
T 1l0q_A 118 PLGLALSPDGKKLYVTNNGDKT----------------VSVINTVTKAVINTVSVGR-----SPKGIAVTPDGTKVYVAN 176 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTE----------------EEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEE
T ss_pred cceEEECCCCCEEEEEeCCCCE----------------EEEEECCCCcEEEEEecCC-----CcceEEECCCCCEEEEEe
Confidence 2333333 4568787765543 8899998877665543321 12344444 34566665
Q ss_pred cccccccccccccccccCeeEEEECCCCceEE
Q 007468 314 GVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (602)
Q Consensus 314 G~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~ 345 (602)
+.. +.|++||+.+.....
T Consensus 177 ~~~--------------~~v~~~d~~~~~~~~ 194 (391)
T 1l0q_A 177 FDS--------------MSISVIDTVTNSVID 194 (391)
T ss_dssp TTT--------------TEEEEEETTTTEEEE
T ss_pred CCC--------------CEEEEEECCCCeEEE
Confidence 432 459999998876543
No 32
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.95 E-value=0.37 Score=48.03 Aligned_cols=210 Identities=14% Similarity=0.089 Sum_probs=106.5
Q ss_pred eEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCC
Q 007468 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (602)
Q Consensus 72 ~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~ 149 (602)
+.+++.|. ++.||+.... +......+.++++|+.+.+....... ....+.+++. ++.+|+.+..
T Consensus 44 ~~~~~s~d-g~~l~~~~~~---~~~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~v~~~~------ 109 (353)
T 3vgz_A 44 YEMAYSQQ-ENALWLATSQ---SRKLDKGGVVYRLDPVTLEVTQAIHN----DLKPFGATINNTTQTLWFGNTV------ 109 (353)
T ss_dssp EEEEEETT-TTEEEEEECC---CTTTEESEEEEEECTTTCCEEEEEEE----SSCCCSEEEETTTTEEEEEETT------
T ss_pred cceEECCC-CCEEEEEcCC---CcCCCCCccEEEEcCCCCeEEEEEec----CCCcceEEECCCCCEEEEEecC------
Confidence 44555552 3577776532 11111245799999998865433211 1112333333 3568887653
Q ss_pred CcceecCeEEEEECCCCcEEE-cccCCCCC-----CCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCce
Q 007468 150 ERFHHYKDFWMLDLKTNQWEQ-LNLKGCPS-----PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (602)
Q Consensus 150 ~~~~~~~dv~~yd~~t~~W~~-~~~~~~p~-----~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W 221 (602)
.+.+++||+.+.+-.. +....... +..-+.++.. +++||+.+... ...+++||+.+.+-
T Consensus 110 -----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--------~~~i~~~d~~~~~~ 176 (353)
T 3vgz_A 110 -----NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK--------ESVIWVVDGGNIKL 176 (353)
T ss_dssp -----TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS--------SCEEEEEETTTTEE
T ss_pred -----CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC--------CceEEEEcCCCCce
Confidence 2468999998886432 22210011 1112333333 45677765221 24699999987654
Q ss_pred EEeccCCCCCCCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCce
Q 007468 222 QEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299 (602)
Q Consensus 222 ~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~ 299 (602)
...-.. ....-+.++.. +..||+... . ..+++||+.+.+-......+........
T Consensus 177 ~~~~~~------~~~~~~~~~~s~dg~~l~~~~~-~----------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 233 (353)
T 3vgz_A 177 KTAIQN------TGKMSTGLALDSEGKRLYTTNA-D----------------GELITIDTADNKILSRKKLLDDGKEHFF 233 (353)
T ss_dssp EEEECC------CCTTCCCCEEETTTTEEEEECT-T----------------SEEEEEETTTTEEEEEEECCCSSSCCCE
T ss_pred EEEecC------CCCccceEEECCCCCEEEEEcC-C----------------CeEEEEECCCCeEEEEEEcCCCCCCccc
Confidence 333221 11111223333 556777543 2 2477899887754433222111111222
Q ss_pred eEEEEE--CCeEEEeccccccccccccccccccCeeEEEECCCCceEE
Q 007468 300 FSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (602)
Q Consensus 300 ~s~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~ 345 (602)
.++++. ++.||+.... -+.|++||+.+.+...
T Consensus 234 ~~~~~s~dg~~l~~~~~~--------------~~~v~~~d~~~~~~~~ 267 (353)
T 3vgz_A 234 INISLDTARQRAFITDSK--------------AAEVLVVDTRNGNILA 267 (353)
T ss_dssp EEEEEETTTTEEEEEESS--------------SSEEEEEETTTCCEEE
T ss_pred ceEEECCCCCEEEEEeCC--------------CCEEEEEECCCCcEEE
Confidence 334444 4556665422 2569999998876543
No 33
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.95 E-value=0.091 Score=52.04 Aligned_cols=194 Identities=13% Similarity=0.096 Sum_probs=98.2
Q ss_pred EEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCc
Q 007468 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQER 151 (602)
Q Consensus 74 ~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~ 151 (602)
+.+.| ++.+++.|+. -..+.+||+.+..-...-... . ..-.++.+ ++.+++.|+..
T Consensus 71 ~~~~~--~~~~l~s~~~---------d~~i~vwd~~~~~~~~~~~~~--~--~~v~~~~~~~~~~~l~s~~~d------- 128 (312)
T 4ery_A 71 VAWSS--DSNLLVSASD---------DKTLKIWDVSSGKCLKTLKGH--S--NYVFCCNFNPQSNLIVSGSFD------- 128 (312)
T ss_dssp EEECT--TSSEEEEEET---------TSEEEEEETTTCCEEEEEECC--S--SCEEEEEECSSSSEEEEEETT-------
T ss_pred EEEcC--CCCEEEEECC---------CCEEEEEECCCCcEEEEEcCC--C--CCEEEEEEcCCCCEEEEEeCC-------
Confidence 34444 4566666662 236788888877543221111 1 11122222 45566677653
Q ss_pred ceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCC
Q 007468 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (602)
Q Consensus 152 ~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~ 229 (602)
..+.+||+.+.+-...- +.....-.++.+ ++.+++.|+.+ ..+.+||+.+......-...
T Consensus 129 ----~~i~iwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~~wd~~~~~~~~~~~~~- 190 (312)
T 4ery_A 129 ----ESVRIWDVKTGKCLKTL----PAHSDPVSAVHFNRDGSLIVSSSYD---------GLCRIWDTASGQCLKTLIDD- 190 (312)
T ss_dssp ----SCEEEEETTTCCEEEEE----CCCSSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTCCEEEEECCS-
T ss_pred ----CcEEEEECCCCEEEEEe----cCCCCcEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceeeEEecc-
Confidence 34788998876543221 111111223333 56677777753 35888998876543322110
Q ss_pred CCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEE-EEECC
Q 007468 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM-CVHKK 307 (602)
Q Consensus 230 ~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~-~~~~~ 307 (602)
..+.. ..++.. ++..++.|+.++. +.+||+.+..-...-. +........... ...++
T Consensus 191 ---~~~~~-~~~~~~~~~~~l~~~~~d~~----------------i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 249 (312)
T 4ery_A 191 ---DNPPV-SFVKFSPNGKYILAATLDNT----------------LKLWDYSKGKCLKTYT-GHKNEKYCIFANFSVTGG 249 (312)
T ss_dssp ---SCCCE-EEEEECTTSSEEEEEETTTE----------------EEEEETTTTEEEEEEC-SSCCSSSCCCEEEECSSS
T ss_pred ---CCCce-EEEEECCCCCEEEEEcCCCe----------------EEEEECCCCcEEEEEE-ecCCceEEEEEEEEeCCC
Confidence 11111 112222 5666677776554 7888887765333221 111111111122 22356
Q ss_pred eEEEeccccccccccccccccccCeeEEEECCCCc
Q 007468 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 308 ~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
.+++.|+.+ +.|.+||+.+..
T Consensus 250 ~~l~sg~~d--------------g~i~vwd~~~~~ 270 (312)
T 4ery_A 250 KWIVSGSED--------------NLVYIWNLQTKE 270 (312)
T ss_dssp CEEEECCTT--------------SCEEEEETTTCC
T ss_pred cEEEEECCC--------------CEEEEEECCCch
Confidence 777777764 358999988764
No 34
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.94 E-value=0.025 Score=55.90 Aligned_cols=157 Identities=7% Similarity=-0.016 Sum_probs=100.6
Q ss_pred eeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCe
Q 007468 126 SAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV 205 (602)
Q Consensus 126 ~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~ 205 (602)
+..+....++.||+..|.. ..+.++|+.+.+-..-- ++..-++.+++..+++||+....
T Consensus 56 ftqGL~~~~~~Ly~stG~~-----------g~v~~iD~~Tgkv~~~~---l~~~~FgeGit~~g~~Ly~ltw~------- 114 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQ-----------GTLRQLSLESAQPVWME---RLGNIFAEGLASDGERLYQLTWT------- 114 (268)
T ss_dssp CEEEEEEETTEEEEEETTT-----------TEEEECCSSCSSCSEEE---ECTTCCEEEEEECSSCEEEEESS-------
T ss_pred ccceEEEECCEEEEEcCCC-----------CEEEEEECCCCcEEeEE---CCCCcceeEEEEeCCEEEEEEcc-------
Confidence 3456666689999999863 23889999988642221 23344566788889999998653
Q ss_pred eeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeE
Q 007468 206 RYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (602)
Q Consensus 206 ~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (602)
.+.+++||+.+.+-.. .. +.+-.+.+++..+..||+.-| + +.++.+|+.+.+-.
T Consensus 115 --~~~v~V~D~~Tl~~~~--ti-----~~~~eGwGLt~Dg~~L~vSdG-s----------------~~l~~iDp~T~~v~ 168 (268)
T 3nok_A 115 --EGLLFTWSGMPPQRER--TT-----RYSGEGWGLCYWNGKLVRSDG-G----------------TMLTFHEPDGFALV 168 (268)
T ss_dssp --SCEEEEEETTTTEEEE--EE-----ECSSCCCCEEEETTEEEEECS-S----------------SEEEEECTTTCCEE
T ss_pred --CCEEEEEECCcCcEEE--EE-----eCCCceeEEecCCCEEEEECC-C----------------CEEEEEcCCCCeEE
Confidence 3689999998865432 22 222345667777889999876 3 24899999987654
Q ss_pred EeecCCCCCCCC-ceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCCce
Q 007468 286 KVKKIGMPPGPR-AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (602)
Q Consensus 286 ~l~~~g~~P~~R-~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W 343 (602)
.--..+.-+.+. .---+...+++||+-- + ..+.|.+.|+.+.+=
T Consensus 169 ~~I~V~~~g~~v~~lNeLe~~dG~lyanv-w-------------~s~~I~vIDp~TG~V 213 (268)
T 3nok_A 169 GAVQVKLRGQPVELINELECANGVIYANI-W-------------HSSDVLEIDPATGTV 213 (268)
T ss_dssp EEEECEETTEECCCEEEEEEETTEEEEEE-T-------------TCSEEEEECTTTCBE
T ss_pred EEEEeCCCCcccccccccEEeCCEEEEEE-C-------------CCCeEEEEeCCCCcE
Confidence 432221112221 1123455688888521 1 247899999999853
No 35
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=96.94 E-value=0.055 Score=55.37 Aligned_cols=195 Identities=13% Similarity=0.052 Sum_probs=106.3
Q ss_pred eEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCC
Q 007468 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (602)
Q Consensus 72 ~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~ 149 (602)
.++.+.|. +..||+.|+. -+.|++||+.+++....-.. ...-.+++.. +..||+.|..
T Consensus 35 ~~~~~s~d-g~~l~~~~~~---------d~~i~v~d~~~~~~~~~~~~----~~~v~~~~~spdg~~l~~~~~~------ 94 (391)
T 1l0q_A 35 MGAVISPD-GTKVYVANAH---------SNDVSIIDTATNNVIATVPA----GSSPQGVAVSPDGKQVYVTNMA------ 94 (391)
T ss_dssp EEEEECTT-SSEEEEEEGG---------GTEEEEEETTTTEEEEEEEC----SSSEEEEEECTTSSEEEEEETT------
T ss_pred ceEEECCC-CCEEEEECCC---------CCeEEEEECCCCeEEEEEEC----CCCccceEECCCCCEEEEEECC------
Confidence 44555552 3456677652 24789999988876544321 1122233333 3557666542
Q ss_pred CcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccC
Q 007468 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (602)
Q Consensus 150 ~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~ 227 (602)
-..+++||+.+++...... ....-.+++.. +..||+.++. -..+++||+.+.+....-..
T Consensus 95 -----~~~v~v~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~---------~~~v~~~d~~~~~~~~~~~~ 156 (391)
T 1l0q_A 95 -----SSTLSVIDTTSNTVAGTVK----TGKSPLGLALSPDGKKLYVTNNG---------DKTVSVINTVTKAVINTVSV 156 (391)
T ss_dssp -----TTEEEEEETTTTEEEEEEE----CSSSEEEEEECTTSSEEEEEETT---------TTEEEEEETTTTEEEEEEEC
T ss_pred -----CCEEEEEECCCCeEEEEEe----CCCCcceEEECCCCCEEEEEeCC---------CCEEEEEECCCCcEEEEEec
Confidence 1468999999887644332 11122333333 3467777653 25799999988766544332
Q ss_pred CCCCCCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE
Q 007468 228 FGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (602)
Q Consensus 228 ~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~ 305 (602)
...-..++.. +..||+.++..+. +++||+.+......... ...-.++++.
T Consensus 157 -------~~~~~~~~~~~dg~~l~~~~~~~~~----------------v~~~d~~~~~~~~~~~~-----~~~~~~~~~~ 208 (391)
T 1l0q_A 157 -------GRSPKGIAVTPDGTKVYVANFDSMS----------------ISVIDTVTNSVIDTVKV-----EAAPSGIAVN 208 (391)
T ss_dssp -------CSSEEEEEECTTSSEEEEEETTTTE----------------EEEEETTTTEEEEEEEC-----SSEEEEEEEC
T ss_pred -------CCCcceEEECCCCCEEEEEeCCCCE----------------EEEEECCCCeEEEEEec-----CCCccceEEC
Confidence 1111233333 5577777765443 88999988765544321 1122333343
Q ss_pred -CCeEEEeccccccccccccccccccCeeEEEECCCCce
Q 007468 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (602)
Q Consensus 306 -~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W 343 (602)
+++.+++++... .-+.|++||+.+.+-
T Consensus 209 ~~g~~l~~~~~~~-----------~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 209 PEGTKAYVTNVDK-----------YFNTVSMIDTGTNKI 236 (391)
T ss_dssp TTSSEEEEEEECS-----------SCCEEEEEETTTTEE
T ss_pred CCCCEEEEEecCc-----------CCCcEEEEECCCCeE
Confidence 444444444211 135699999987643
No 36
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=96.91 E-value=0.16 Score=49.45 Aligned_cols=191 Identities=8% Similarity=0.013 Sum_probs=99.9
Q ss_pred eEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCC
Q 007468 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (602)
Q Consensus 72 ~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~ 150 (602)
+.+++.+ ++.||+.... .+.+++||+ +.....+.... .....+.++.. ++.+|+..-.
T Consensus 102 ~~i~~~~--~g~l~v~~~~---------~~~i~~~d~-~g~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~------- 160 (299)
T 2z2n_A 102 YGITEGP--NGDIWFTEMN---------GNRIGRITD-DGKIREYELPN--KGSYPSFITLGSDNALWFTENQ------- 160 (299)
T ss_dssp EEEEECT--TSCEEEEETT---------TTEEEEECT-TCCEEEEECSS--TTCCEEEEEECTTSCEEEEETT-------
T ss_pred eeeEECC--CCCEEEEecC---------CceEEEECC-CCCEEEecCCC--CCCCCceEEEcCCCCEEEEeCC-------
Confidence 4444444 5677776431 136888998 66666543211 12223344443 5678876421
Q ss_pred cceecCeEEEEECCCCcEEEcccCCCCCCCc-ccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCC
Q 007468 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRS-GHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (602)
Q Consensus 151 ~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~-~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~ 228 (602)
...+++||+ +.+...+.. +.... -++++.. ++.||+.... .+.+++||+ +..+..+....
T Consensus 161 ----~~~i~~~~~-~g~~~~~~~---~~~~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~~~-~g~~~~~~~~~ 222 (299)
T 2z2n_A 161 ----NNAIGRITE-SGDITEFKI---PTPASGPVGITKGNDDALWFVEII---------GNKIGRITT-SGEITEFKIPT 222 (299)
T ss_dssp ----TTEEEEECT-TCCEEEEEC---SSTTCCEEEEEECTTSSEEEEETT---------TTEEEEECT-TCCEEEEECSS
T ss_pred ----CCEEEEEcC-CCcEEEeeC---CCCCCcceeEEECCCCCEEEEccC---------CceEEEECC-CCcEEEEECCC
Confidence 246889999 777766432 11111 2233333 4678876432 257899999 77776543220
Q ss_pred CCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECC
Q 007468 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKK 307 (602)
Q Consensus 229 ~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~ 307 (602)
+ ...-++++.. ++.|||...... .+++||+ +.....+...+ ....-+++++.++
T Consensus 223 ----~-~~~~~~i~~~~~g~l~v~~~~~~----------------~i~~~d~-~g~~~~~~~~~---~~~~~~~i~~~~g 277 (299)
T 2z2n_A 223 ----P-NARPHAITAGAGIDLWFTEWGAN----------------KIGRLTS-NNIIEEYPIQI---KSAEPHGICFDGE 277 (299)
T ss_dssp ----T-TCCEEEEEECSTTCEEEEETTTT----------------EEEEEET-TTEEEEEECSS---SSCCEEEEEECSS
T ss_pred ----C-CCCceeEEECCCCCEEEeccCCc----------------eEEEECC-CCceEEEeCCC---CCCccceEEecCC
Confidence 1 1111233333 667888753322 3888998 44544443211 1112234444556
Q ss_pred eEEEeccccccccccccccccccCeeEEEECCCC
Q 007468 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (602)
Q Consensus 308 ~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~ 341 (602)
.||+.... +.+.+|++.+.
T Consensus 278 ~l~v~~~~---------------~~l~~~~~~~~ 296 (299)
T 2z2n_A 278 TIWFAMEC---------------DKIGKLTLIKD 296 (299)
T ss_dssp CEEEEETT---------------TEEEEEEEC--
T ss_pred CEEEEecC---------------CcEEEEEcCcc
Confidence 77775421 34888888764
No 37
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=96.86 E-value=0.34 Score=46.98 Aligned_cols=197 Identities=6% Similarity=-0.036 Sum_probs=107.7
Q ss_pred eEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCC
Q 007468 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (602)
Q Consensus 72 ~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~ 150 (602)
+++++.+ ++.||+... ..+.|++||+. ..+....... ....-++++.. ++.||+....
T Consensus 18 ~~i~~d~--~g~l~v~~~---------~~~~v~~~d~~-~~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~------- 76 (299)
T 2z2n_A 18 YGITVSD--KGKVWITQH---------KANMISCINLD-GKITEYPLPT--PDAKVMCLTISSDGEVWFTENA------- 76 (299)
T ss_dssp EEEEECT--TSCEEEEET---------TTTEEEEECTT-CCEEEEECSS--TTCCEEEEEECTTSCEEEEETT-------
T ss_pred cceEECC--CCCEEEEec---------CCCcEEEEcCC-CCeEEecCCc--ccCceeeEEECCCCCEEEeCCC-------
Confidence 4455554 677887543 12468899998 7777654321 12223333332 5678887532
Q ss_pred cceecCeEEEEECCCCcEEEcccCCCC-CCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCC
Q 007468 151 RFHHYKDFWMLDLKTNQWEQLNLKGCP-SPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (602)
Q Consensus 151 ~~~~~~dv~~yd~~t~~W~~~~~~~~p-~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~ 228 (602)
...+++||+. ..+..+.. | ....-++++.. ++.||+.... ...+++||+ +.....+...
T Consensus 77 ----~~~i~~~~~~-g~~~~~~~---~~~~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~d~-~g~~~~~~~~- 137 (299)
T 2z2n_A 77 ----ANKIGRITKK-GIIKEYTL---PNPDSAPYGITEGPNGDIWFTEMN---------GNRIGRITD-DGKIREYELP- 137 (299)
T ss_dssp ----TTEEEEECTT-SCEEEEEC---SSTTCCEEEEEECTTSCEEEEETT---------TTEEEEECT-TCCEEEEECS-
T ss_pred ----CCeEEEECCC-CcEEEEeC---CCcCCCceeeEECCCCCEEEEecC---------CceEEEECC-CCCEEEecCC-
Confidence 1358889886 55555432 2 12222334443 5788886432 246889998 6666554332
Q ss_pred CCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-C
Q 007468 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-K 306 (602)
Q Consensus 229 ~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~ 306 (602)
.....-++++.. ++.||+...... .+++||+ +.....+.... ....-.++++. +
T Consensus 138 ----~~~~~~~~i~~~~~g~l~v~~~~~~----------------~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~~~~ 193 (299)
T 2z2n_A 138 ----NKGSYPSFITLGSDNALWFTENQNN----------------AIGRITE-SGDITEFKIPT---PASGPVGITKGND 193 (299)
T ss_dssp ----STTCCEEEEEECTTSCEEEEETTTT----------------EEEEECT-TCCEEEEECSS---TTCCEEEEEECTT
T ss_pred ----CCCCCCceEEEcCCCCEEEEeCCCC----------------EEEEEcC-CCcEEEeeCCC---CCCcceeEEECCC
Confidence 111222334444 678888653222 3889998 67666653211 11122344444 4
Q ss_pred CeEEEeccccccccccccccccccCeeEEEECCCCceEEeE
Q 007468 307 KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (602)
Q Consensus 307 ~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~ 347 (602)
+.||+.... .+.|++||+ +..+..+.
T Consensus 194 g~l~v~~~~--------------~~~i~~~~~-~g~~~~~~ 219 (299)
T 2z2n_A 194 DALWFVEII--------------GNKIGRITT-SGEITEFK 219 (299)
T ss_dssp SSEEEEETT--------------TTEEEEECT-TCCEEEEE
T ss_pred CCEEEEccC--------------CceEEEECC-CCcEEEEE
Confidence 678775432 245899998 77766553
No 38
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.85 E-value=0.063 Score=53.17 Aligned_cols=194 Identities=14% Similarity=0.067 Sum_probs=102.3
Q ss_pred EEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 007468 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (602)
Q Consensus 73 s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~ 151 (602)
++.+.| ++.++++|+. -..+.+||+.+.............. .-.+++.. ++.+++.|+..
T Consensus 102 ~~~~~~--~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d------- 162 (337)
T 1gxr_A 102 SCKLLP--DGCTLIVGGE---------ASTLSIWDLAAPTPRIKAELTSSAP-ACYALAISPDSKVCFSCCSD------- 162 (337)
T ss_dssp EEEECT--TSSEEEEEES---------SSEEEEEECCCC--EEEEEEECSSS-CEEEEEECTTSSEEEEEETT-------
T ss_pred EEEEcC--CCCEEEEEcC---------CCcEEEEECCCCCcceeeecccCCC-ceEEEEECCCCCEEEEEeCC-------
Confidence 344454 5666667662 2478899998887543322111111 11222222 45566666642
Q ss_pred ceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCC
Q 007468 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (602)
Q Consensus 152 ~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~ 229 (602)
..+.+||+.+.+....-. .. ......+.+ ++.+++.|+.+ ..+.+||+.+..-......
T Consensus 163 ----g~v~~~d~~~~~~~~~~~--~~--~~~i~~~~~~~~~~~l~~~~~d---------g~i~~~d~~~~~~~~~~~~-- 223 (337)
T 1gxr_A 163 ----GNIAVWDLHNQTLVRQFQ--GH--TDGASCIDISNDGTKLWTGGLD---------NTVRSWDLREGRQLQQHDF-- 223 (337)
T ss_dssp ----SCEEEEETTTTEEEEEEC--CC--SSCEEEEEECTTSSEEEEEETT---------SEEEEEETTTTEEEEEEEC--
T ss_pred ----CcEEEEeCCCCceeeeee--cc--cCceEEEEECCCCCEEEEEecC---------CcEEEEECCCCceEeeecC--
Confidence 358889998876543321 11 112223333 55666676643 4688999887653332222
Q ss_pred CCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CC
Q 007468 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KK 307 (602)
Q Consensus 230 ~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~ 307 (602)
+.+ -.+++.. ++.++++|+.++. +.+||+.+..-..+.. ....-.++++. ++
T Consensus 224 ---~~~--v~~~~~s~~~~~l~~~~~~~~----------------i~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~ 277 (337)
T 1gxr_A 224 ---TSQ--IFSLGYCPTGEWLAVGMESSN----------------VEVLHVNKPDKYQLHL-----HESCVLSLKFAYCG 277 (337)
T ss_dssp ---SSC--EEEEEECTTSSEEEEEETTSC----------------EEEEETTSSCEEEECC-----CSSCEEEEEECTTS
T ss_pred ---CCc--eEEEEECCCCCEEEEEcCCCc----------------EEEEECCCCCeEEEcC-----CccceeEEEECCCC
Confidence 111 1223333 6667777776554 8888887765333321 11222333443 56
Q ss_pred eEEEeccccccccccccccccccCeeEEEECCCCceE
Q 007468 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (602)
Q Consensus 308 ~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~ 344 (602)
++++.|+.. +.|.+||+.+..-.
T Consensus 278 ~~l~~~~~d--------------g~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 278 KWFVSTGKD--------------NLLNAWRTPYGASI 300 (337)
T ss_dssp SEEEEEETT--------------SEEEEEETTTCCEE
T ss_pred CEEEEecCC--------------CcEEEEECCCCeEE
Confidence 677777653 35899998876543
No 39
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.81 E-value=0.28 Score=49.32 Aligned_cols=148 Identities=11% Similarity=0.103 Sum_probs=76.6
Q ss_pred EEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 007468 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (602)
Q Consensus 73 s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~ 151 (602)
++.+.| ++.++++|+. -+.|++||+.+..|..+..... ....-.+++.. ++.+++.|+..
T Consensus 13 ~~~~s~--~~~~l~~~~~---------d~~v~i~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~d------- 73 (372)
T 1k8k_C 13 CHAWNK--DRTQIAICPN---------NHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTD------- 73 (372)
T ss_dssp EEEECT--TSSEEEEECS---------SSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEEETT-------
T ss_pred EEEECC--CCCEEEEEeC---------CCEEEEEeCCCCcEEeeeeecC-CCCcccEEEEeCCCCEEEEEcCC-------
Confidence 344555 6778888873 2478999999987665443211 11112223333 45666666642
Q ss_pred ceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCc-eEEeccCC
Q 007468 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK-WQEIKPRF 228 (602)
Q Consensus 152 ~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~-W~~v~~~~ 228 (602)
..+.+||+.+..+..... .........++.+ ++.+++.|+.+ ..+.+||+.+.. |..+....
T Consensus 74 ----g~i~vwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~v~i~d~~~~~~~~~~~~~~ 138 (372)
T 1k8k_C 74 ----RNAYVWTLKGRTWKPTLV--ILRINRAARCVRWAPNEKKFAVGSGS---------RVISICYFEQENDWWVCKHIK 138 (372)
T ss_dssp ----SCEEEEEEETTEEEEEEE--CCCCSSCEEEEEECTTSSEEEEEETT---------SSEEEEEEETTTTEEEEEEEC
T ss_pred ----CeEEEEECCCCeeeeeEE--eecCCCceeEEEECCCCCEEEEEeCC---------CEEEEEEecCCCcceeeeeee
Confidence 347788888887765433 1111122223333 55677777653 345666665543 43332221
Q ss_pred CCCCCCCccceeEEEe-CCEEEEEcCccCC
Q 007468 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (602)
Q Consensus 229 ~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~ 257 (602)
. +....-.+++.. ++.+++.|+.++.
T Consensus 139 ~---~~~~~i~~~~~~~~~~~l~~~~~dg~ 165 (372)
T 1k8k_C 139 K---PIRSTVLSLDWHPNSVLLAAGSCDFK 165 (372)
T ss_dssp T---TCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred c---ccCCCeeEEEEcCCCCEEEEEcCCCC
Confidence 0 111222223333 6677778877665
No 40
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.75 E-value=0.089 Score=55.24 Aligned_cols=206 Identities=11% Similarity=-0.000 Sum_probs=113.4
Q ss_pred EEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CC-EEEEEeCccCCCCCCc
Q 007468 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KN-YLYIFGGEFTSPNQER 151 (602)
Q Consensus 74 ~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~-~iyV~GG~~~~~~~~~ 151 (602)
..+.| +++.+++++. ++ ....|+++|+.+.+...+.... ....+.+.. ++ .|++.+....
T Consensus 184 ~~~Sp--dg~~la~~s~--~~----~~~~i~~~d~~tg~~~~l~~~~----~~~~~~~~spdg~~la~~~~~~g------ 245 (415)
T 2hqs_A 184 PAWSP--DGSKLAYVTF--ES----GRSALVIQTLANGAVRQVASFP----RHNGAPAFSPDGSKLAFALSKTG------ 245 (415)
T ss_dssp EEECT--TSSEEEEEEC--TT----SSCEEEEEETTTCCEEEEECCS----SCEEEEEECTTSSEEEEEECTTS------
T ss_pred eEEcC--CCCEEEEEEe--cC----CCcEEEEEECCCCcEEEeecCC----CcccCEEEcCCCCEEEEEEecCC------
Confidence 44444 4555565552 11 1247999999999887765421 122222222 34 4554544321
Q ss_pred ceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCC
Q 007468 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (602)
Q Consensus 152 ~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~ 229 (602)
...+|+||+.+.....+.. .+ .....+.+ +++.+++++.... ...+|.+|+.+..-..+...
T Consensus 246 ---~~~i~~~d~~~~~~~~l~~--~~---~~~~~~~~spdg~~l~~~s~~~g------~~~i~~~d~~~~~~~~l~~~-- 309 (415)
T 2hqs_A 246 ---SLNLYVMDLASGQIRQVTD--GR---SNNTEPTWFPDSQNLAFTSDQAG------RPQVYKVNINGGAPQRITWE-- 309 (415)
T ss_dssp ---SCEEEEEETTTCCEEECCC--CS---SCEEEEEECTTSSEEEEEECTTS------SCEEEEEETTSSCCEECCCS--
T ss_pred ---CceEEEEECCCCCEEeCcC--CC---CcccceEECCCCCEEEEEECCCC------CcEEEEEECCCCCEEEEecC--
Confidence 2569999999988766543 11 12223333 4554455443211 24799999988765544322
Q ss_pred CCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CC
Q 007468 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KK 307 (602)
Q Consensus 230 ~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~ 307 (602)
.....+++.. +++.+++++.... ...++++|+.+.....+... . ...++++. ++
T Consensus 310 -----~~~~~~~~~spdG~~l~~~~~~~g-------------~~~i~~~d~~~~~~~~l~~~-----~-~~~~~~~spdg 365 (415)
T 2hqs_A 310 -----GSQNQDADVSSDGKFMVMVSSNGG-------------QQHIAKQDLATGGVQVLSST-----F-LDETPSLAPNG 365 (415)
T ss_dssp -----SSEEEEEEECTTSSEEEEEEECSS-------------CEEEEEEETTTCCEEECCCS-----S-SCEEEEECTTS
T ss_pred -----CCcccCeEECCCCCEEEEEECcCC-------------ceEEEEEECCCCCEEEecCC-----C-CcCCeEEcCCC
Confidence 1222223322 5554445443211 24589999998887665431 1 22333443 67
Q ss_pred eEEEeccccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 308 ~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
+.+++++.... ...||++|+.......+..
T Consensus 366 ~~l~~~s~~~~-----------~~~l~~~d~~g~~~~~l~~ 395 (415)
T 2hqs_A 366 TMVIYSSSQGM-----------GSVLNLVSTDGRFKARLPA 395 (415)
T ss_dssp SEEEEEEEETT-----------EEEEEEEETTSCCEEECCC
T ss_pred CEEEEEEcCCC-----------ccEEEEEECCCCcEEEeeC
Confidence 77777765331 2479999998887776654
No 41
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.049 Score=54.96 Aligned_cols=191 Identities=9% Similarity=0.025 Sum_probs=102.0
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--C--CEEEEEeCccCCCCCCcceecC
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--K--NYLYIFGGEFTSPNQERFHHYK 156 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~--~~iyV~GG~~~~~~~~~~~~~~ 156 (602)
++.+++.|+. -..|.+||.....+..+.... .......++.+ . +.+++.|+.+ .
T Consensus 22 ~~~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~d-----------g 79 (379)
T 3jrp_A 22 YGKRLATCSS---------DKTIKIFEVEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYD-----------G 79 (379)
T ss_dssp SSSEEEEEET---------TSCEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETT-----------S
T ss_pred CCCEEEEEEC---------CCcEEEEecCCCcceeeeEec--CCCCcEEEEEeCCCCCCCEEEEeccC-----------C
Confidence 5677777762 236788888877776554322 11122223333 2 5667777653 3
Q ss_pred eEEEEECCCCcEEEcccCCCCCCCcccEEEEE--C--CEEEEEcCccCCCCCeeeeceEEEEECCCCce-EEeccCCCCC
Q 007468 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K--HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW-QEIKPRFGSM 231 (602)
Q Consensus 157 dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~--~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W-~~v~~~~~~~ 231 (602)
.+.+||+.+..|..+.. .........++.+ + +.+++.|+.+ ..+.+||+.+... ..+...
T Consensus 80 ~v~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~d---------~~i~v~d~~~~~~~~~~~~~---- 144 (379)
T 3jrp_A 80 KVLIWKEENGRWSQIAV--HAVHSASVNSVQWAPHEYGPLLLVASSD---------GKVSVVEFKENGTTSPIIID---- 144 (379)
T ss_dssp CEEEEEEETTEEEEEEE--ECCCSSCEEEEEECCGGGCSEEEEEETT---------SEEEEEECCTTSCCCEEEEE----
T ss_pred EEEEEEcCCCceeEeee--ecCCCcceEEEEeCCCCCCCEEEEecCC---------CcEEEEecCCCCceeeEEec----
Confidence 47788988888876654 2222222333333 3 5677777653 4678888876532 221111
Q ss_pred CCCCccceeEEEe--------------CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCC--CCeeEEeecCCCCCC
Q 007468 232 WPSPRSGFQFFVY--------------QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR--TWEWSKVKKIGMPPG 295 (602)
Q Consensus 232 ~P~~R~~~~~~~~--------------~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~--t~~W~~l~~~g~~P~ 295 (602)
.....-.+++.. ++.+++.|+.++. +.+||+. ...|..+..... .
T Consensus 145 -~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~----------------i~i~d~~~~~~~~~~~~~~~~--h 205 (379)
T 3jrp_A 145 -AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL----------------VKIWKYNSDAQTYVLESTLEG--H 205 (379)
T ss_dssp -CCTTCEEEEEECCCC----------CTTCEEEEEETTSC----------------EEEEEEETTTTEEEEEEEECC--C
T ss_pred -CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCe----------------EEEEEecCCCcceeeEEEEec--c
Confidence 011111122222 3677888887665 6667664 344655543211 1
Q ss_pred CCceeEEEEE-C---CeEEEeccccccccccccccccccCeeEEEECCCC
Q 007468 296 PRAGFSMCVH-K---KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (602)
Q Consensus 296 ~R~~~s~~~~-~---~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~ 341 (602)
...-.++++. + +.+++.|+..+ .|.+||+.+.
T Consensus 206 ~~~v~~~~~sp~~~~~~~l~s~~~dg--------------~i~iwd~~~~ 241 (379)
T 3jrp_A 206 SDWVRDVAWSPTVLLRSYLASVSQDR--------------TCIIWTQDNE 241 (379)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEETTS--------------CEEEEEESST
T ss_pred cCcEeEEEECCCCCCCCeEEEEeCCC--------------EEEEEeCCCC
Confidence 1122334443 3 67888877643 4788887765
No 42
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=96.67 E-value=0.089 Score=50.68 Aligned_cols=215 Identities=10% Similarity=0.032 Sum_probs=110.1
Q ss_pred eEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCC-CcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCC
Q 007468 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK-QEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (602)
Q Consensus 72 ~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~-~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~ 149 (602)
.++.+.| +++.+++++. ..+++||+.+ .....+.... ....-.+++.. ++..+++++....
T Consensus 45 ~~~~~sp--dg~~l~~~~~----------~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~--- 107 (297)
T 2ojh_A 45 EAPNWSP--DGKYLLLNSE----------GLLYRLSLAGDPSPEKVDTGF--ATICNNDHGISPDGALYAISDKVEF--- 107 (297)
T ss_dssp EEEEECT--TSSEEEEEET----------TEEEEEESSSCCSCEECCCTT--CCCBCSCCEECTTSSEEEEEECTTT---
T ss_pred EeeEECC--CCCEEEEEcC----------CeEEEEeCCCCCCceEecccc--ccccccceEECCCCCEEEEEEeCCC---
Confidence 3455555 5666666541 3789999998 8777665322 11121222222 4555555543221
Q ss_pred CcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE-CC-EEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccC
Q 007468 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (602)
Q Consensus 150 ~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~~-~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~ 227 (602)
....+|.+++.+.....+... . . .+.++.. ++ .|++.++... ...+|.+++.+.....+...
T Consensus 108 ----~~~~l~~~~~~~~~~~~~~~~--~-~--~~~~~~spdg~~l~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~ 171 (297)
T 2ojh_A 108 ----GKSAIYLLPSTGGTPRLMTKN--L-P--SYWHGWSPDGKSFTYCGIRDQ-------VFDIYSMDIDSGVETRLTHG 171 (297)
T ss_dssp ----SSCEEEEEETTCCCCEECCSS--S-S--EEEEEECTTSSEEEEEEEETT-------EEEEEEEETTTCCEEECCCS
T ss_pred ----CcceEEEEECCCCceEEeecC--C-C--ccceEECCCCCEEEEEECCCC-------ceEEEEEECCCCcceEcccC
Confidence 136799999988776555431 1 1 2222222 34 4554444322 23688888887776655443
Q ss_pred CCCCCCCCccceeEEEe-CC-EEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE
Q 007468 228 FGSMWPSPRSGFQFFVY-QD-EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (602)
Q Consensus 228 ~~~~~P~~R~~~~~~~~-~~-~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~ 305 (602)
+... ..++.. ++ .|++.+..... ..+|.+++.......+... ......+++.
T Consensus 172 -----~~~~--~~~~~s~dg~~l~~~~~~~~~--------------~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~s 225 (297)
T 2ojh_A 172 -----EGRN--DGPDYSPDGRWIYFNSSRTGQ--------------MQIWRVRVDGSSVERITDS-----AYGDWFPHPS 225 (297)
T ss_dssp -----SSCE--EEEEECTTSSEEEEEECTTSS--------------CEEEEEETTSSCEEECCCC-----SEEEEEEEEC
T ss_pred -----CCcc--ccceECCCCCEEEEEecCCCC--------------ccEEEECCCCCCcEEEecC-----CcccCCeEEC
Confidence 1111 222222 44 45554433322 4588888777766665431 1122223332
Q ss_pred -CCeEEEeccccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 306 -~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
+++.+++++....... ........|++||+.+.....+..
T Consensus 226 ~dg~~l~~~~~~~~~~~---~~~~~~~~l~~~d~~~~~~~~~~~ 266 (297)
T 2ojh_A 226 PSGDKVVFVSYDADVFD---HPRDLDVRVQLMDMDGGNVETLFD 266 (297)
T ss_dssp TTSSEEEEEEEETTCCS---CCSSEEEEEEEEETTSCSCEEEEE
T ss_pred CCCCEEEEEEcCCCCCc---ccccCceEEEEEecCCCCceeeec
Confidence 5666666654321100 000012569999999887766553
No 43
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=96.67 E-value=0.53 Score=45.75 Aligned_cols=206 Identities=10% Similarity=0.064 Sum_probs=107.9
Q ss_pred eEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCC--CceeeEEEEE--CCEEEEEeCccCCC
Q 007468 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPP--PRSAHQAVSW--KNYLYIFGGEFTSP 147 (602)
Q Consensus 72 ~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~--~R~~hs~~~~--~~~iyV~GG~~~~~ 147 (602)
+++++.+ ++.|||.+.. .+.|++||+.......+....... ...-+.+++. ++.|||.+...
T Consensus 33 ~~v~~~~--~g~l~v~~~~---------~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~--- 98 (286)
T 1q7f_A 33 SGVAVNA--QNDIIVADTN---------NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP--- 98 (286)
T ss_dssp EEEEECT--TCCEEEEEGG---------GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG---
T ss_pred ceEEECC--CCCEEEEECC---------CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC---
Confidence 4444444 5778887541 246889998865544443211001 1223344442 57899886421
Q ss_pred CCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEecc
Q 007468 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (602)
Q Consensus 148 ~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~ 226 (602)
...+.+||........+.. +....-+++++. +++|||.... .+.|++||+.......+..
T Consensus 99 -------~~~i~~~d~~g~~~~~~~~---~~~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~~~~g~~~~~~~~ 159 (286)
T 1q7f_A 99 -------THQIQIYNQYGQFVRKFGA---TILQHPRGVTVDNKGRIIVVECK---------VMRVIIFDQNGNVLHKFGC 159 (286)
T ss_dssp -------GCEEEEECTTSCEEEEECT---TTCSCEEEEEECTTSCEEEEETT---------TTEEEEECTTSCEEEEEEC
T ss_pred -------CCEEEEECCCCcEEEEecC---ccCCCceEEEEeCCCCEEEEECC---------CCEEEEEcCCCCEEEEeCC
Confidence 2458889965544443332 111122333333 5678887542 2568899976654444432
Q ss_pred CCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE
Q 007468 227 RFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (602)
Q Consensus 227 ~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~ 305 (602)
. +....| .++++. ++.|||....... +++||+.......+...+.. ..-.++++.
T Consensus 160 ~--~~~~~p---~~i~~~~~g~l~v~~~~~~~----------------i~~~~~~g~~~~~~~~~g~~---~~p~~i~~d 215 (286)
T 1q7f_A 160 S--KHLEFP---NGVVVNDKQEIFISDNRAHC----------------VKVFNYEGQYLRQIGGEGIT---NYPIGVGIN 215 (286)
T ss_dssp T--TTCSSE---EEEEECSSSEEEEEEGGGTE----------------EEEEETTCCEEEEESCTTTS---CSEEEEEEC
T ss_pred C--CccCCc---EEEEECCCCCEEEEECCCCE----------------EEEEcCCCCEEEEEccCCcc---CCCcEEEEC
Confidence 2 111111 233333 6789987654433 88999876554444332211 122344443
Q ss_pred -CCeEEEeccccccccccccccccccCeeEEEECCCCceEEeE
Q 007468 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (602)
Q Consensus 306 -~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~ 347 (602)
+++|||...... ..|.+|++....-..+.
T Consensus 216 ~~G~l~v~~~~~~-------------~~i~~~~~~g~~~~~~~ 245 (286)
T 1q7f_A 216 SNGEILIADNHNN-------------FNLTIFTQDGQLISALE 245 (286)
T ss_dssp TTCCEEEEECSSS-------------CEEEEECTTSCEEEEEE
T ss_pred CCCCEEEEeCCCC-------------EEEEEECCCCCEEEEEc
Confidence 577888754321 15899997655444443
No 44
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=96.60 E-value=0.43 Score=47.20 Aligned_cols=209 Identities=11% Similarity=-0.004 Sum_probs=103.6
Q ss_pred CcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCC
Q 007468 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSP 147 (602)
Q Consensus 69 R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~ 147 (602)
..+-+.+..+. ++.||++.-. .+.|++||+.+.....+... .+. .+++.. ++.+||..+
T Consensus 13 ~~~Egp~w~~~-~~~l~~~d~~---------~~~i~~~d~~~~~~~~~~~~----~~~-~~i~~~~dG~l~v~~~----- 72 (297)
T 3g4e_A 13 RCGESPVWEEV-SNSLLFVDIP---------AKKVCRWDSFTKQVQRVTMD----APV-SSVALRQSGGYVATIG----- 72 (297)
T ss_dssp SBEEEEEEETT-TTEEEEEETT---------TTEEEEEETTTCCEEEEECS----SCE-EEEEEBTTSSEEEEET-----
T ss_pred ccccCCeEECC-CCEEEEEECC---------CCEEEEEECCCCcEEEEeCC----Cce-EEEEECCCCCEEEEEC-----
Confidence 34455555543 4678887652 24789999998876655332 122 222222 456666431
Q ss_pred CCCcceecCeEEEEECCCCcEEEcccCCC--CCCCcccEEEEECCEEEEEcCccCCCC---CeeeeceEEEEECCCCceE
Q 007468 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGC--PSPRSGHRMVLYKHKIIVFGGFYDTLR---EVRYYNDLYVFDLDQFKWQ 222 (602)
Q Consensus 148 ~~~~~~~~~dv~~yd~~t~~W~~~~~~~~--p~~R~~h~~~~~~~~Lyv~GG~~~~~~---~~~~~~~v~~yd~~t~~W~ 222 (602)
+.+++||+.+.+++.+..... +..|....++.-+++||+-. ...... .......+|+|++.. ...
T Consensus 73 --------~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~-~~~~~~~~~~~~~~~~l~~~d~~g-~~~ 142 (297)
T 3g4e_A 73 --------TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGT-MAEETAPAVLERHQGALYSLFPDH-HVK 142 (297)
T ss_dssp --------TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEE-EECCSBTTBCCTTCEEEEEECTTS-CEE
T ss_pred --------CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEec-CCcccccccccCCCcEEEEEECCC-CEE
Confidence 358899999998887654211 21222222222256777632 211000 000134788888753 333
Q ss_pred EeccCCCCCCCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeC--CCCeeEEeecCCCCC-CCC
Q 007468 223 EIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDP--RTWEWSKVKKIGMPP-GPR 297 (602)
Q Consensus 223 ~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~--~t~~W~~l~~~g~~P-~~R 297 (602)
.+... ...| .+++.. +..||+...... .|++|+. .+............+ ...
T Consensus 143 ~~~~~----~~~p---ngi~~spdg~~lyv~~~~~~----------------~i~~~~~d~~~G~~~~~~~~~~~~~~~~ 199 (297)
T 3g4e_A 143 KYFDQ----VDIS---NGLDWSLDHKIFYYIDSLSY----------------SVDAFDYDLQTGQISNRRSVYKLEKEEQ 199 (297)
T ss_dssp EEEEE----ESBE---EEEEECTTSCEEEEEEGGGT----------------EEEEEEECTTTCCEEEEEEEEECCGGGC
T ss_pred EEeec----cccc---cceEEcCCCCEEEEecCCCC----------------cEEEEeccCCCCcccCcEEEEECCCCCC
Confidence 33221 0111 233333 456888765443 3777765 444432111000001 111
Q ss_pred ceeEEEEE-CCeEEEeccccccccccccccccccCeeEEEECCCCceE
Q 007468 298 AGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (602)
Q Consensus 298 ~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~ 344 (602)
.-.++++- +++|||.... -+.|++||+.+.+..
T Consensus 200 ~p~g~~~d~~G~lwva~~~--------------~~~v~~~d~~tG~~~ 233 (297)
T 3g4e_A 200 IPDGMCIDAEGKLWVACYN--------------GGRVIRLDPVTGKRL 233 (297)
T ss_dssp EEEEEEEBTTSCEEEEEET--------------TTEEEEECTTTCCEE
T ss_pred CCCeeEECCCCCEEEEEcC--------------CCEEEEEcCCCceEE
Confidence 22344443 5677775421 134899999876543
No 45
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.55 E-value=0.19 Score=52.64 Aligned_cols=185 Identities=11% Similarity=0.131 Sum_probs=101.6
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~ 160 (602)
++..++.|+. -+.|.+||..+.+-...-... .....++.+++.+++.|+.+ ..+.+
T Consensus 142 d~~~l~~g~~---------dg~i~iwd~~~~~~~~~~~~h----~~~v~~l~~~~~~l~sg~~d-----------g~i~v 197 (435)
T 1p22_A 142 DDQKIVSGLR---------DNTIKIWDKNTLECKRILTGH----TGSVLCLQYDERVIITGSSD-----------STVRV 197 (435)
T ss_dssp CSSEEEEEES---------SSCEEEEESSSCCEEEEECCC----SSCEEEEECCSSEEEEEETT-----------SCEEE
T ss_pred CCCEEEEEeC---------CCeEEEEeCCCCeEEEEEcCC----CCcEEEEEECCCEEEEEcCC-----------CeEEE
Confidence 5777888873 247889999887655432221 12223444477777887753 35788
Q ss_pred EECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEe-ccCCCCCCCCCccce
Q 007468 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI-KPRFGSMWPSPRSGF 239 (602)
Q Consensus 161 yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v-~~~~~~~~P~~R~~~ 239 (602)
||+.+.+....-. .....-.++.+++.+++.|+.+ ..+.+||+.+..-... ... .......
T Consensus 198 wd~~~~~~~~~~~----~h~~~v~~l~~~~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~-----~~~~~~v 259 (435)
T 1p22_A 198 WDVNTGEMLNTLI----HHCEAVLHLRFNNGMMVTCSKD---------RSIAVWDMASPTDITLRRVL-----VGHRAAV 259 (435)
T ss_dssp EESSSCCEEEEEC----CCCSCEEEEECCTTEEEEEETT---------SCEEEEECSSSSCCEEEEEE-----CCCSSCE
T ss_pred EECCCCcEEEEEc----CCCCcEEEEEEcCCEEEEeeCC---------CcEEEEeCCCCCCceeeeEe-----cCCCCcE
Confidence 9988876433211 1122233344456677777753 4688888876542211 111 1111122
Q ss_pred eEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEeccccccc
Q 007468 240 QFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDME 319 (602)
Q Consensus 240 ~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~ 319 (602)
.++.+++..++.|+.++. +.+||+.+..-...-.. .. ....++..++.+++.|+.+
T Consensus 260 ~~~~~~~~~l~s~~~dg~----------------i~vwd~~~~~~~~~~~~----~~-~~v~~~~~~~~~l~~g~~d--- 315 (435)
T 1p22_A 260 NVVDFDDKYIVSASGDRT----------------IKVWNTSTCEFVRTLNG----HK-RGIACLQYRDRLVVSGSSD--- 315 (435)
T ss_dssp EEEEEETTEEEEEETTSE----------------EEEEETTTCCEEEEEEC----CS-SCEEEEEEETTEEEEEETT---
T ss_pred EEEEeCCCEEEEEeCCCe----------------EEEEECCcCcEEEEEcC----CC-CcEEEEEeCCCEEEEEeCC---
Confidence 223335666677776654 77888877643322211 11 1122333356677777754
Q ss_pred cccccccccccCeeEEEECCCCc
Q 007468 320 MKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 320 ~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
+.|.+||+.+..
T Consensus 316 -----------g~i~iwd~~~~~ 327 (435)
T 1p22_A 316 -----------NTIRLWDIECGA 327 (435)
T ss_dssp -----------SCEEEEETTTCC
T ss_pred -----------CeEEEEECCCCC
Confidence 358899988754
No 46
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.52 E-value=0.41 Score=47.67 Aligned_cols=184 Identities=11% Similarity=0.072 Sum_probs=96.4
Q ss_pred CcEEEEEcCCCcEE-EecCCCCCC-----CceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcc
Q 007468 101 GDLYRYDVEKQEWK-VISSPNSPP-----PRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLN 172 (602)
Q Consensus 101 ~dv~~yd~~~~~W~-~l~~~~~P~-----~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~ 172 (602)
+.+++||+.+.+-. .+....... +..-+.+++. ++.+|+.+... ...+++||+.+.+-...-
T Consensus 111 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----------~~~i~~~d~~~~~~~~~~ 180 (353)
T 3vgz_A 111 SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK----------ESVIWVVDGGNIKLKTAI 180 (353)
T ss_dssp TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS----------SCEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC----------CceEEEEcCCCCceEEEe
Confidence 47899999887653 333211111 1122334443 46788776321 246899999887644332
Q ss_pred cCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe--CCEE
Q 007468 173 LKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEV 248 (602)
Q Consensus 173 ~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~--~~~I 248 (602)
. . ....-+.++.. ++.||+... .+.+++||+.+.+-........ ........++++. ++.|
T Consensus 181 ~--~-~~~~~~~~~~s~dg~~l~~~~~----------~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~l 245 (353)
T 3vgz_A 181 Q--N-TGKMSTGLALDSEGKRLYTTNA----------DGELITIDTADNKILSRKKLLD--DGKEHFFINISLDTARQRA 245 (353)
T ss_dssp C--C-CCTTCCCCEEETTTTEEEEECT----------TSEEEEEETTTTEEEEEEECCC--SSSCCCEEEEEEETTTTEE
T ss_pred c--C-CCCccceEEECCCCCEEEEEcC----------CCeEEEEECCCCeEEEEEEcCC--CCCCcccceEEECCCCCEE
Confidence 2 0 11112233333 456776543 2468899998875433222210 0111122223333 5678
Q ss_pred EEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE--CCeEEEecccccccccccccc
Q 007468 249 FLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIM 326 (602)
Q Consensus 249 yv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~--~~~lyv~GG~~~~~~~~~~~~ 326 (602)
|+..... +.+++||+.+.+....-..+ .+ .++++. ++.+|+.+..
T Consensus 246 ~~~~~~~----------------~~v~~~d~~~~~~~~~~~~~---~~---~~~~~s~dg~~l~v~~~~----------- 292 (353)
T 3vgz_A 246 FITDSKA----------------AEVLVVDTRNGNILAKVAAP---ES---LAVLFNPARNEAYVTHRQ----------- 292 (353)
T ss_dssp EEEESSS----------------SEEEEEETTTCCEEEEEECS---SC---CCEEEETTTTEEEEEETT-----------
T ss_pred EEEeCCC----------------CEEEEEECCCCcEEEEEEcC---CC---ceEEECCCCCEEEEEECC-----------
Confidence 7765433 34899999887665544332 22 234443 4457776532
Q ss_pred ccccCeeEEEECCCCceEE
Q 007468 327 SLFLNELYGFQLDNHRWYP 345 (602)
Q Consensus 327 ~~~~ndv~~yd~~t~~W~~ 345 (602)
-+.|++||+.+.+...
T Consensus 293 ---~~~v~~~d~~~~~~~~ 308 (353)
T 3vgz_A 293 ---AGKVSVIDAKSYKVVK 308 (353)
T ss_dssp ---TTEEEEEETTTTEEEE
T ss_pred ---CCeEEEEECCCCeEEE
Confidence 2469999998876544
No 47
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.52 E-value=0.34 Score=50.08 Aligned_cols=208 Identities=11% Similarity=0.054 Sum_probs=99.8
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv 158 (602)
++.+|+.|+. -..+++||+.+.+....-.. ....-.+++.. +..+|+.++.. ..+
T Consensus 180 ~~~~~~s~~~---------d~~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~-----------~~i 236 (433)
T 3bws_A 180 HNELWVSQMQ---------ANAVHVFDLKTLAYKATVDL---TGKWSKILLYDPIRDLVYCSNWIS-----------EDI 236 (433)
T ss_dssp GTEEEEEEGG---------GTEEEEEETTTCCEEEEEEC---SSSSEEEEEEETTTTEEEEEETTT-----------TEE
T ss_pred CCEEEEEECC---------CCEEEEEECCCceEEEEEcC---CCCCeeEEEEcCCCCEEEEEecCC-----------CcE
Confidence 4566665552 24688999887654432111 11122233333 45677776532 468
Q ss_pred EEEECCCCcEEEcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCcc
Q 007468 159 WMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237 (602)
Q Consensus 159 ~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~ 237 (602)
++||+.+.+....-. ....-++++.. ++..+++++...... ..--..+++||+.+.+-...... +. .
T Consensus 237 ~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~~-~~~dg~i~~~d~~~~~~~~~~~~-----~~--~ 304 (433)
T 3bws_A 237 SVIDRKTKLEIRKTD----KIGLPRGLLLSKDGKELYIAQFSASNQ-ESGGGRLGIYSMDKEKLIDTIGP-----PG--N 304 (433)
T ss_dssp EEEETTTTEEEEECC----CCSEEEEEEECTTSSEEEEEEEESCTT-CSCCEEEEEEETTTTEEEEEEEE-----EE--C
T ss_pred EEEECCCCcEEEEec----CCCCceEEEEcCCCCEEEEEECCCCcc-ccCCCeEEEEECCCCcEEeeccC-----CC--C
Confidence 899998887644322 11122233332 444444444322110 00124789999988754333221 11 1
Q ss_pred ceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEecc
Q 007468 238 GFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGG 314 (602)
Q Consensus 238 ~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~GG 314 (602)
-.+++.. +..||+.++..+. +.+||+.+..-...-.. ...-.++++. +++.+++++
T Consensus 305 ~~~~~~~~~g~~l~~~~~~~~~----------------v~v~d~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~ 363 (433)
T 3bws_A 305 KRHIVSGNTENKIYVSDMCCSK----------------IEVYDLKEKKVQKSIPV-----FDKPNTIALSPDGKYLYVSC 363 (433)
T ss_dssp EEEEEECSSTTEEEEEETTTTE----------------EEEEETTTTEEEEEEEC-----SSSEEEEEECTTSSEEEEEE
T ss_pred cceEEECCCCCEEEEEecCCCE----------------EEEEECCCCcEEEEecC-----CCCCCeEEEcCCCCEEEEEe
Confidence 1122222 4478888776554 88899887654433221 1122344444 444444443
Q ss_pred ccccccccc-cccccccCeeEEEECCCCceE
Q 007468 315 VVDMEMKGD-VIMSLFLNELYGFQLDNHRWY 344 (602)
Q Consensus 315 ~~~~~~~~~-~~~~~~~ndv~~yd~~t~~W~ 344 (602)
......... ...+..-..|++||+.+.+..
T Consensus 364 ~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~ 394 (433)
T 3bws_A 364 RGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK 394 (433)
T ss_dssp CCCCCTTTCTTSCCSSCCEEEEEETTTTEEE
T ss_pred cCCCccccccccccccceEEEEEECCCCcEE
Confidence 321100000 000011237999998876543
No 48
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=96.48 E-value=0.42 Score=46.89 Aligned_cols=135 Identities=10% Similarity=0.120 Sum_probs=67.9
Q ss_pred eEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCC-CCceeeEEEEE-C-CEEEEEeCccCCCC
Q 007468 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSP-PPRSAHQAVSW-K-NYLYIFGGEFTSPN 148 (602)
Q Consensus 72 ~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P-~~R~~hs~~~~-~-~~iyV~GG~~~~~~ 148 (602)
.+.++.+ ++.||+..... .......+.|++||+.++++..+..+... ....-++++.. + +.|||....
T Consensus 21 ~~~~~~~--~g~l~~~~~~~--~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~----- 91 (314)
T 1pjx_A 21 EGPVFDK--NGDFYIVAPEV--EVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR----- 91 (314)
T ss_dssp EEEEECT--TSCEEEEETTC--EETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-----
T ss_pred cCceECC--CCCEEEEEecc--ccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC-----
Confidence 3444444 67888872100 00001235789999999988866431000 11122333333 4 688887641
Q ss_pred CCcceecCeEEEEECCCCcEEEc-ccCCCCCC-CcccEEEEE-CCEEEEEcCccCCC------CCeeeeceEEEEECCCC
Q 007468 149 QERFHHYKDFWMLDLKTNQWEQL-NLKGCPSP-RSGHRMVLY-KHKIIVFGGFYDTL------REVRYYNDLYVFDLDQF 219 (602)
Q Consensus 149 ~~~~~~~~dv~~yd~~t~~W~~~-~~~~~p~~-R~~h~~~~~-~~~Lyv~GG~~~~~------~~~~~~~~v~~yd~~t~ 219 (602)
+.+++||+. .+...+ .......+ ..-+.++.. +++||+........ ........+++|++. .
T Consensus 92 -------~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g 162 (314)
T 1pjx_A 92 -------LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G 162 (314)
T ss_dssp -------TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S
T ss_pred -------CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C
Confidence 358899998 777665 33111111 112233332 56888765322100 000113578999987 5
Q ss_pred ceEEe
Q 007468 220 KWQEI 224 (602)
Q Consensus 220 ~W~~v 224 (602)
+...+
T Consensus 163 ~~~~~ 167 (314)
T 1pjx_A 163 QMIQV 167 (314)
T ss_dssp CEEEE
T ss_pred CEEEe
Confidence 55544
No 49
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.46 E-value=0.28 Score=48.37 Aligned_cols=192 Identities=12% Similarity=0.115 Sum_probs=101.2
Q ss_pred EEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCC
Q 007468 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (602)
Q Consensus 73 s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~ 150 (602)
++.+.| ++.+++.|+. -..+.+|+..+......-... .....++.+ ++.+++.|+.+
T Consensus 28 ~~~~s~--~~~~l~s~~~---------dg~i~iw~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~~d------ 86 (312)
T 4ery_A 28 SVKFSP--NGEWLASSSA---------DKLIKIWGAYDGKFEKTISGH----KLGISDVAWSSDSNLLVSASDD------ 86 (312)
T ss_dssp EEEECT--TSSEEEEEET---------TSCEEEEETTTCCEEEEECCC----SSCEEEEEECTTSSEEEEEETT------
T ss_pred EEEECC--CCCEEEEeeC---------CCeEEEEeCCCcccchhhccC----CCceEEEEEcCCCCEEEEECCC------
Confidence 344454 5677777772 236788898888776543221 111222333 45666777643
Q ss_pred cceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCC
Q 007468 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (602)
Q Consensus 151 ~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~ 228 (602)
..+.+||+.+.+-...-. .. ...-.++.+ ++.+++.|+.+ ..+.+||+.+..-...-..
T Consensus 87 -----~~i~vwd~~~~~~~~~~~--~~--~~~v~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~- 147 (312)
T 4ery_A 87 -----KTLKIWDVSSGKCLKTLK--GH--SNYVFCCNFNPQSNLIVSGSFD---------ESVRIWDVKTGKCLKTLPA- 147 (312)
T ss_dssp -----SEEEEEETTTCCEEEEEE--CC--SSCEEEEEECSSSSEEEEEETT---------SCEEEEETTTCCEEEEECC-
T ss_pred -----CEEEEEECCCCcEEEEEc--CC--CCCEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCEEEEEecC-
Confidence 357888988775332211 01 111122222 45667777754 3588899887653322111
Q ss_pred CCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-C
Q 007468 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-K 306 (602)
Q Consensus 229 ~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~ 306 (602)
....-.+++.. ++.+++.|+.++. +.+||+.+.+-...-... ..+ .-..+++. +
T Consensus 148 -----~~~~v~~~~~~~~~~~l~~~~~d~~----------------i~~wd~~~~~~~~~~~~~--~~~-~~~~~~~~~~ 203 (312)
T 4ery_A 148 -----HSDPVSAVHFNRDGSLIVSSSYDGL----------------CRIWDTASGQCLKTLIDD--DNP-PVSFVKFSPN 203 (312)
T ss_dssp -----CSSCEEEEEECTTSSEEEEEETTSC----------------EEEEETTTCCEEEEECCS--SCC-CEEEEEECTT
T ss_pred -----CCCcEEEEEEcCCCCEEEEEeCCCc----------------EEEEECCCCceeeEEecc--CCC-ceEEEEECCC
Confidence 11111122222 6677788887765 888998776543322111 111 11222332 5
Q ss_pred CeEEEeccccccccccccccccccCeeEEEECCCCc
Q 007468 307 KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 307 ~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
+..++.|+.. +.|.+||+.+.+
T Consensus 204 ~~~l~~~~~d--------------~~i~iwd~~~~~ 225 (312)
T 4ery_A 204 GKYILAATLD--------------NTLKLWDYSKGK 225 (312)
T ss_dssp SSEEEEEETT--------------TEEEEEETTTTE
T ss_pred CCEEEEEcCC--------------CeEEEEECCCCc
Confidence 6666666653 458899987764
No 50
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=96.44 E-value=0.7 Score=44.72 Aligned_cols=199 Identities=7% Similarity=-0.028 Sum_probs=105.0
Q ss_pred eEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCC
Q 007468 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (602)
Q Consensus 72 ~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~ 150 (602)
+++++.+ ++.||+.... .+.|++||+. .++..+.... ....-+.+++. ++.|||....
T Consensus 65 ~~i~~~~--~g~l~v~~~~---------~~~v~~~d~~-g~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~------- 123 (300)
T 2qc5_A 65 MCLIVSS--LGDIWFTENG---------ANKIGKLSKK-GGFTEYPLPQ--PDSGPYGITEGLNGDIWFTQLN------- 123 (300)
T ss_dssp EEEEECT--TSCEEEEETT---------TTEEEEECTT-SCEEEEECSS--TTCCEEEEEECSTTCEEEEETT-------
T ss_pred eeEEECC--CCCEEEEecC---------CCeEEEECCC-CCeEEecCCC--CCCCCccceECCCCCEEEEccC-------
Confidence 3444443 5677776431 2468899988 7776554321 12233344443 5778887532
Q ss_pred cceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCC
Q 007468 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (602)
Q Consensus 151 ~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~ 229 (602)
...+++||+. .+....... .....-++++.. +++||+.... ...+++||+ +..+..+...
T Consensus 124 ----~~~i~~~~~~-g~~~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~---------~~~i~~~~~-~g~~~~~~~~-- 184 (300)
T 2qc5_A 124 ----GDRIGKLTAD-GTIYEYDLP--NKGSYPAFITLGSDNALWFTENQ---------NNSIGRITN-TGKLEEYPLP-- 184 (300)
T ss_dssp ----TTEEEEECTT-SCEEEEECS--STTCCEEEEEECTTSSEEEEETT---------TTEEEEECT-TCCEEEEECS--
T ss_pred ----CCeEEEECCC-CCEEEccCC--CCCCCceeEEECCCCCEEEEecC---------CCeEEEECC-CCcEEEeeCC--
Confidence 2458889987 665544321 011222333332 5678875431 246899998 6666655332
Q ss_pred CCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CC
Q 007468 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KK 307 (602)
Q Consensus 230 ~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~ 307 (602)
. . ...-.++++. ++.||+...... .+++|++ +..+...... .....-.++++. ++
T Consensus 185 ~--~-~~~~~~i~~d~~g~l~v~~~~~~----------------~i~~~~~-~g~~~~~~~~---~~~~~~~~i~~d~~g 241 (300)
T 2qc5_A 185 T--N-AAAPVGITSGNDGALWFVEIMGN----------------KIGRITT-TGEISEYDIP---TPNARPHAITAGKNS 241 (300)
T ss_dssp S--T-TCCEEEEEECTTSSEEEEETTTT----------------EEEEECT-TCCEEEEECS---STTCCEEEEEECSTT
T ss_pred C--C-CCCcceEEECCCCCEEEEccCCC----------------EEEEEcC-CCcEEEEECC---CCCCCceEEEECCCC
Confidence 0 1 1111233333 678888654322 3888998 5556554321 111122344443 56
Q ss_pred eEEEeccccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 308 ~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
+||+.... .+.|.+|++ +.....+..
T Consensus 242 ~l~v~~~~--------------~~~i~~~~~-~g~~~~~~~ 267 (300)
T 2qc5_A 242 EIWFTEWG--------------ANQIGRITN-DNTIQEYQL 267 (300)
T ss_dssp CEEEEETT--------------TTEEEEECT-TSCEEEEEC
T ss_pred CEEEeccC--------------CCeEEEECC-CCcEEEEEC
Confidence 78776422 246899998 566665443
No 51
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.18 Score=50.61 Aligned_cols=199 Identities=11% Similarity=0.099 Sum_probs=103.1
Q ss_pred CEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--C--CEEEEEeCccCCCCCCcceecCe
Q 007468 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--K--NYLYIFGGEFTSPNQERFHHYKD 157 (602)
Q Consensus 82 ~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~--~~iyV~GG~~~~~~~~~~~~~~d 157 (602)
+.+++.|+. -..|.+||+.+..|..+.... .......++.+ . +.++++|+.. ..
T Consensus 69 ~~~l~s~~~---------dg~v~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~d-----------~~ 126 (379)
T 3jrp_A 69 GTILASCSY---------DGKVLIWKEENGRWSQIAVHA--VHSASVNSVQWAPHEYGPLLLVASSD-----------GK 126 (379)
T ss_dssp CSEEEEEET---------TSCEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETT-----------SE
T ss_pred CCEEEEecc---------CCEEEEEEcCCCceeEeeeec--CCCcceEEEEeCCCCCCCEEEEecCC-----------Cc
Confidence 567777762 246889999999887654322 11222223333 2 5567777643 35
Q ss_pred EEEEECCCCcE-EEcccCCCCCCCcccEEEEE---------------CCEEEEEcCccCCCCCeeeeceEEEEECCCC--
Q 007468 158 FWMLDLKTNQW-EQLNLKGCPSPRSGHRMVLY---------------KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF-- 219 (602)
Q Consensus 158 v~~yd~~t~~W-~~~~~~~~p~~R~~h~~~~~---------------~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~-- 219 (602)
+.+||+.+... ..... ........++.+ ++.+++.|+.++ .+.+||+.+.
T Consensus 127 i~v~d~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~ 194 (379)
T 3jrp_A 127 VSVVEFKENGTTSPIII---DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN---------LVKIWKYNSDAQ 194 (379)
T ss_dssp EEEEECCTTSCCCEEEE---ECCTTCEEEEEECCCC----------CTTCEEEEEETTS---------CEEEEEEETTTT
T ss_pred EEEEecCCCCceeeEEe---cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCC---------eEEEEEecCCCc
Confidence 77888876621 11111 001111122222 367777777543 5777777554
Q ss_pred ceEEeccCCCCCCCCCccceeEEEe-C---CEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCC--eeEEeecCCCC
Q 007468 220 KWQEIKPRFGSMWPSPRSGFQFFVY-Q---DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMP 293 (602)
Q Consensus 220 ~W~~v~~~~~~~~P~~R~~~~~~~~-~---~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g~~ 293 (602)
.|..+.... .....-.+++.. + +.+++.|+.++. +.+||+.+. .+...... ..
T Consensus 195 ~~~~~~~~~----~h~~~v~~~~~sp~~~~~~~l~s~~~dg~----------------i~iwd~~~~~~~~~~~~~~-~~ 253 (379)
T 3jrp_A 195 TYVLESTLE----GHSDWVRDVAWSPTVLLRSYLASVSQDRT----------------CIIWTQDNEQGPWKKTLLK-EE 253 (379)
T ss_dssp EEEEEEEEC----CCSSCEEEEEECCCCSSSEEEEEEETTSC----------------EEEEEESSTTSCCEEEESS-SS
T ss_pred ceeeEEEEe----cccCcEeEEEECCCCCCCCeEEEEeCCCE----------------EEEEeCCCCCccceeeeec-cc
Confidence 355554431 111111223333 4 788888887765 666776554 22222111 11
Q ss_pred CCCCceeEEEEE-CCeEEEeccccccccccccccccccCeeEEEECC-CCceEEeEec
Q 007468 294 PGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD-NHRWYPLELR 349 (602)
Q Consensus 294 P~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~-t~~W~~l~~~ 349 (602)
.....-.++++. ++.++++|+.+ ..|.+|++. ...|..+...
T Consensus 254 ~~~~~v~~~~~s~~g~~l~~~~~d--------------g~i~iw~~~~~~~~~~~~~~ 297 (379)
T 3jrp_A 254 KFPDVLWRASWSLSGNVLALSGGD--------------NKVTLWKENLEGKWEPAGEV 297 (379)
T ss_dssp CCSSCEEEEEECSSSCCEEEEESS--------------SSEEEEEEEETTEEEEEEEE
T ss_pred cCCCcEEEEEEcCCCCEEEEecCC--------------CcEEEEeCCCCCccccccce
Confidence 122222333443 56677777653 347888876 5688887763
No 52
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=96.24 E-value=0.42 Score=45.75 Aligned_cols=186 Identities=8% Similarity=0.023 Sum_probs=97.0
Q ss_pred eeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCC-CcEEEcccCCC
Q 007468 99 VYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT-NQWEQLNLKGC 176 (602)
Q Consensus 99 ~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t-~~W~~~~~~~~ 176 (602)
.-..+++||+.++....+... ...-.+++.. ++..+++++. ..+++||+.+ .....+.. .
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~----~~~v~~~~~spdg~~l~~~~~------------~~i~~~d~~~~~~~~~~~~--~ 81 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQT----PELFEAPNWSPDGKYLLLNSE------------GLLYRLSLAGDPSPEKVDT--G 81 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEE----SSCCEEEEECTTSSEEEEEET------------TEEEEEESSSCCSCEECCC--T
T ss_pred cceeEEEEeCCCCceeeeccC----CcceEeeEECCCCCEEEEEcC------------CeEEEEeCCCCCCceEecc--c
Confidence 346899999999887765431 1112222222 4555555531 4689999998 77666543 1
Q ss_pred CC-CCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcC
Q 007468 177 PS-PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGG 253 (602)
Q Consensus 177 p~-~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG 253 (602)
+. .........-+++.+++++.... ....+|.+++.+.....+... . + ...++.. +..|++.++
T Consensus 82 ~~~~~~~~~~~spdg~~l~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~-----~-~--~~~~~~spdg~~l~~~~~ 148 (297)
T 2ojh_A 82 FATICNNDHGISPDGALYAISDKVEF-----GKSAIYLLPSTGGTPRLMTKN-----L-P--SYWHGWSPDGKSFTYCGI 148 (297)
T ss_dssp TCCCBCSCCEECTTSSEEEEEECTTT-----SSCEEEEEETTCCCCEECCSS-----S-S--EEEEEECTTSSEEEEEEE
T ss_pred cccccccceEECCCCCEEEEEEeCCC-----CcceEEEEECCCCceEEeecC-----C-C--ccceEECCCCCEEEEEEC
Confidence 21 11122222225566666553221 146799999888775555443 1 1 2222232 344554554
Q ss_pred ccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEeccccccccccccccccccCe
Q 007468 254 YSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNE 332 (602)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~nd 332 (602)
.... ..+|.+++.+.....+... .....++++. +++.+++++..+ ....
T Consensus 149 ~~~~--------------~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~~-----------~~~~ 198 (297)
T 2ojh_A 149 RDQV--------------FDIYSMDIDSGVETRLTHG-----EGRNDGPDYSPDGRWIYFNSSRT-----------GQMQ 198 (297)
T ss_dssp ETTE--------------EEEEEEETTTCCEEECCCS-----SSCEEEEEECTTSSEEEEEECTT-----------SSCE
T ss_pred CCCc--------------eEEEEEECCCCcceEcccC-----CCccccceECCCCCEEEEEecCC-----------CCcc
Confidence 4322 3588888887776655432 1112233333 455444443211 1345
Q ss_pred eEEEECCCCceEE
Q 007468 333 LYGFQLDNHRWYP 345 (602)
Q Consensus 333 v~~yd~~t~~W~~ 345 (602)
||.+++.......
T Consensus 199 i~~~~~~~~~~~~ 211 (297)
T 2ojh_A 199 IWRVRVDGSSVER 211 (297)
T ss_dssp EEEEETTSSCEEE
T ss_pred EEEECCCCCCcEE
Confidence 7777766655443
No 53
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.31 Score=51.19 Aligned_cols=161 Identities=14% Similarity=0.082 Sum_probs=76.4
Q ss_pred EEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcC--CCcEE-EecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCC
Q 007468 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE--KQEWK-VISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPN 148 (602)
Q Consensus 73 s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~--~~~W~-~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~ 148 (602)
++.+.|. +..|++.|+. -..|.+||+. +.... .+.... .+..-.+++.. ++.++++|+.
T Consensus 107 ~~~~s~d-~~~l~~~~~~---------dg~v~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~----- 169 (450)
T 2vdu_B 107 NLRLTSD-ESRLIACADS---------DKSLLVFDVDKTSKNVLKLRKRFC--FSKRPNAISIAEDDTTVIIADK----- 169 (450)
T ss_dssp EEEECTT-SSEEEEEEGG---------GTEEEEEEECSSSSSCEEEEEEEE--CSSCEEEEEECTTSSEEEEEET-----
T ss_pred EEEEcCC-CCEEEEEECC---------CCeEEEEECcCCCCceeeeeeccc--CCCCceEEEEcCCCCEEEEEeC-----
Confidence 3444441 3344677763 2467888887 44333 221100 11111122222 4556666653
Q ss_pred CCcceecCeEEEEECCCCcEEEcccCCCCCCCcc-cEEEE-EC---CEEEEEcCccCCCCCeeeeceEEEEECCCCceEE
Q 007468 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSG-HRMVL-YK---HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE 223 (602)
Q Consensus 149 ~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~-h~~~~-~~---~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~ 223 (602)
...++.|++.+..........+...... .+++. -+ +.+++.|+.+ ..|.+||+.+.....
T Consensus 170 ------~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d---------~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 170 ------FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD---------EHIKISHYPQCFIVD 234 (450)
T ss_dssp ------TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETT---------SCEEEEEESCTTCEE
T ss_pred ------CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCC---------CcEEEEECCCCceee
Confidence 2457888887654321000001101111 12222 25 7778887753 368888887765433
Q ss_pred eccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEE
Q 007468 224 IKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (602)
Q Consensus 224 v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (602)
...... ..+.. +++..++.+++.|+.++. |.+||+.+.+...
T Consensus 235 ~~~~~h---~~~v~--~~~~sd~~~l~s~~~d~~----------------v~vwd~~~~~~~~ 276 (450)
T 2vdu_B 235 KWLFGH---KHFVS--SICCGKDYLLLSAGGDDK----------------IFAWDWKTGKNLS 276 (450)
T ss_dssp EECCCC---SSCEE--EEEECSTTEEEEEESSSE----------------EEEEETTTCCEEE
T ss_pred eeecCC---CCceE--EEEECCCCEEEEEeCCCe----------------EEEEECCCCcEee
Confidence 211100 11111 122226777777776554 7888887765433
No 54
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.13 E-value=0.4 Score=54.62 Aligned_cols=188 Identities=10% Similarity=-0.019 Sum_probs=101.3
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCC
Q 007468 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (602)
Q Consensus 102 dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R 180 (602)
-|++|++.+..+.............-++++.. ++.||| |.. ...+++||+.+.+++.+...+.+. .
T Consensus 384 Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~-----------~~Gl~~~~~~~~~~~~~~~~~~~~-~ 450 (781)
T 3v9f_A 384 GINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTY-----------LGNISYYNTRLKKFQIIELEKNEL-L 450 (781)
T ss_dssp CEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EET-----------TEEEEEECSSSCEEEECCSTTTCC-C
T ss_pred cEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-Eec-----------cCCEEEEcCCCCcEEEeccCCCCC-C
Confidence 47889998877765421110011222333333 567776 322 135889999999998876421111 1
Q ss_pred cccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCccCCC
Q 007468 181 SGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEV 258 (602)
Q Consensus 181 ~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~ 258 (602)
.-.+++.. ++.|||-. ...+++||+.+..|..+........+... -.+++.. ++.|||.. ....
T Consensus 451 ~v~~i~~d~~g~lwigt-----------~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~d~~g~lWigt-~~~G- 516 (781)
T 3v9f_A 451 DVRVFYEDKNKKIWIGT-----------HAGVFVIDLASKKVIHHYDTSNSQLLENF-VRSIAQDSEGRFWIGT-FGGG- 516 (781)
T ss_dssp CEEEEEECTTSEEEEEE-----------TTEEEEEESSSSSCCEEECTTTSSCSCSC-EEEEEECTTCCEEEEE-SSSC-
T ss_pred eEEEEEECCCCCEEEEE-----------CCceEEEeCCCCeEEecccCcccccccce-eEEEEEcCCCCEEEEE-cCCC-
Confidence 11222222 56777632 14689999999998877654211111111 1222222 67777743 2222
Q ss_pred CCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEeccccccccccccccccccCee-EEE
Q 007468 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNEL-YGF 336 (602)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv-~~y 336 (602)
+++||+.+.+|+.......+|.... .+++.. ++.|+|... . -+ ++|
T Consensus 517 ---------------l~~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~-~---------------Glv~~~ 564 (781)
T 3v9f_A 517 ---------------VGIYTPDMQLVRKFNQYEGFCSNTI-NQIYRSSKGQMWLATG-E---------------GLVCFP 564 (781)
T ss_dssp ---------------EEEECTTCCEEEEECTTTTCSCSCE-EEEEECTTSCEEEEET-T---------------EEEEES
T ss_pred ---------------EEEEeCCCCeEEEccCCCCCCCCee-EEEEECCCCCEEEEEC-C---------------CceEEE
Confidence 8899999999988754222232211 222222 566666322 2 25 889
Q ss_pred ECCCCceEEeEe
Q 007468 337 QLDNHRWYPLEL 348 (602)
Q Consensus 337 d~~t~~W~~l~~ 348 (602)
|+.+.++..+..
T Consensus 565 d~~~~~~~~~~~ 576 (781)
T 3v9f_A 565 SARNFDYQVFQR 576 (781)
T ss_dssp CTTTCCCEEECG
T ss_pred CCCCCcEEEccc
Confidence 998888766543
No 55
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.07 E-value=0.37 Score=49.81 Aligned_cols=204 Identities=10% Similarity=0.020 Sum_probs=106.3
Q ss_pred EEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCC-CCCCceeeEEEEE--CCEEEEEeCccCCCCC
Q 007468 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN-SPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (602)
Q Consensus 73 s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~-~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~ 149 (602)
++++.| ++.+|+.++. -+.|++||+.+.+........ .+.......++.+ ++.+|+.|+..
T Consensus 127 ~~~~s~--~~~~~~~~~~---------~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d----- 190 (433)
T 3bws_A 127 SVRFID--NTRLAIPLLE---------DEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA----- 190 (433)
T ss_dssp CCEESS--SSEEEEEBTT---------SSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG-----
T ss_pred EEEEeC--CCeEEEEeCC---------CCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC-----
Confidence 445555 5778877762 136899999988877543210 0011112223333 67888887642
Q ss_pred CcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccC
Q 007468 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (602)
Q Consensus 150 ~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~ 227 (602)
..+.+||+.+.+....-. .....-.+++.. +..||+.++.+ ..+.+||+.+......-..
T Consensus 191 ------~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~---------~~i~~~d~~~~~~~~~~~~ 252 (433)
T 3bws_A 191 ------NAVHVFDLKTLAYKATVD---LTGKWSKILLYDPIRDLVYCSNWIS---------EDISVIDRKTKLEIRKTDK 252 (433)
T ss_dssp ------TEEEEEETTTCCEEEEEE---CSSSSEEEEEEETTTTEEEEEETTT---------TEEEEEETTTTEEEEECCC
T ss_pred ------CEEEEEECCCceEEEEEc---CCCCCeeEEEEcCCCCEEEEEecCC---------CcEEEEECCCCcEEEEecC
Confidence 468899998865433221 111112223333 44677766532 4689999988765433222
Q ss_pred CCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-
Q 007468 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH- 305 (602)
Q Consensus 228 ~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~- 305 (602)
...-.+++.. ++..+++++..... .......+++||+.+..-...... +..-.++++.
T Consensus 253 -------~~~~~~~~~~~~g~~l~~~~~~~~~--------~~~~dg~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~ 312 (433)
T 3bws_A 253 -------IGLPRGLLLSKDGKELYIAQFSASN--------QESGGGRLGIYSMDKEKLIDTIGP-----PGNKRHIVSGN 312 (433)
T ss_dssp -------CSEEEEEEECTTSSEEEEEEEESCT--------TCSCCEEEEEEETTTTEEEEEEEE-----EECEEEEEECS
T ss_pred -------CCCceEEEEcCCCCEEEEEECCCCc--------cccCCCeEEEEECCCCcEEeeccC-----CCCcceEEECC
Confidence 1122333333 44444444443220 000134688999887754443211 1111233333
Q ss_pred -CCeEEEeccccccccccccccccccCeeEEEECCCCceE
Q 007468 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (602)
Q Consensus 306 -~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~ 344 (602)
+..+|+.++.. +.|.+||+.+.+-.
T Consensus 313 ~g~~l~~~~~~~--------------~~v~v~d~~~~~~~ 338 (433)
T 3bws_A 313 TENKIYVSDMCC--------------SKIEVYDLKEKKVQ 338 (433)
T ss_dssp STTEEEEEETTT--------------TEEEEEETTTTEEE
T ss_pred CCCEEEEEecCC--------------CEEEEEECCCCcEE
Confidence 34677765542 46899999876543
No 56
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=96.06 E-value=0.5 Score=45.28 Aligned_cols=194 Identities=10% Similarity=0.049 Sum_probs=100.2
Q ss_pred cceEEEEecCCCCEEEE-EcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCC
Q 007468 70 SNCSLNINPLKETELIL-YGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSP 147 (602)
Q Consensus 70 ~~~s~~~~~~~~~~iyv-~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~ 147 (602)
..+++++.+ +++||+ ... ..+.|++|++.+.....+.... ...-+++++. ++.|||... .
T Consensus 25 ~p~~i~~~~--~g~l~v~~~~---------~~~~i~~~~~~~~~~~~~~~~~---~~~p~~i~~~~~g~l~v~~~-~--- 86 (270)
T 1rwi_B 25 SPSGVAVDS--AGNVYVTSEG---------MYGRVVKLATGSTGTTVLPFNG---LYQPQGLAVDGAGTVYVTDF-N--- 86 (270)
T ss_dssp CEEEEEECT--TCCEEEEECS---------SSCEEEEECC-----EECCCCS---CCSCCCEEECTTCCEEEEET-T---
T ss_pred CccceEECC--CCCEEEEccC---------CCCcEEEecCCCcccceEeeCC---cCCcceeEECCCCCEEEEcC-C---
Confidence 444555554 577888 533 1246888988776655443211 1122334443 467888754 1
Q ss_pred CCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEecc
Q 007468 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (602)
Q Consensus 148 ~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~ 226 (602)
..+++||+.+.....+...+ ...-+++++. +++||+.... ...+++|+..+........
T Consensus 87 --------~~i~~~d~~~~~~~~~~~~~---~~~p~~i~~~~~g~l~v~~~~---------~~~i~~~~~~~~~~~~~~~ 146 (270)
T 1rwi_B 87 --------NRVVTLAAGSNNQTVLPFDG---LNYPEGLAVDTQGAVYVADRG---------NNRVVKLAAGSKTQTVLPF 146 (270)
T ss_dssp --------TEEEEECTTCSCCEECCCCS---CSSEEEEEECTTCCEEEEEGG---------GTEEEEECTTCCSCEECCC
T ss_pred --------CEEEEEeCCCceEeeeecCC---cCCCcceEECCCCCEEEEECC---------CCEEEEEECCCceeEeecc
Confidence 35889998877655443211 1122334443 5678886432 2468888776655443322
Q ss_pred CCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE
Q 007468 227 RFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (602)
Q Consensus 227 ~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~ 305 (602)
. ....| .++++. ++.||+...... .+++|++.+..-......+ ...-.++++.
T Consensus 147 ~---~~~~p---~~i~~~~~g~l~v~~~~~~----------------~i~~~~~~~~~~~~~~~~~----~~~p~~i~~d 200 (270)
T 1rwi_B 147 T---GLNDP---DGVAVDNSGNVYVTDTDNN----------------RVVKLEAESNNQVVLPFTD----ITAPWGIAVD 200 (270)
T ss_dssp C---SCCSC---CCEEECTTCCEEEEEGGGT----------------EEEEECTTTCCEEECCCSS----CCSEEEEEEC
T ss_pred c---cCCCc---eeEEEeCCCCEEEEECCCC----------------EEEEEecCCCceEeecccC----CCCceEEEEC
Confidence 1 01111 234444 577888765433 3889998776543332211 1222344444
Q ss_pred -CCeEEEeccccccccccccccccccCeeEEEECCCC
Q 007468 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (602)
Q Consensus 306 -~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~ 341 (602)
++.||+.... .+.|++|++...
T Consensus 201 ~~g~l~v~~~~--------------~~~v~~~~~~~~ 223 (270)
T 1rwi_B 201 EAGTVYVTEHN--------------TNQVVKLLAGST 223 (270)
T ss_dssp TTCCEEEEETT--------------TSCEEEECTTCS
T ss_pred CCCCEEEEECC--------------CCcEEEEcCCCC
Confidence 4578776532 245888888664
No 57
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.04 E-value=0.73 Score=51.80 Aligned_cols=120 Identities=14% Similarity=0.172 Sum_probs=69.3
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCC--cEEEecCCCC---CCC---ceeeEEEEECCEEEEEeCccCCCCCCcc
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNS---PPP---RSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~--~W~~l~~~~~---P~~---R~~hs~~~~~~~iyV~GG~~~~~~~~~~ 152 (602)
++.||+... .+.|+++|..+. .|+.-..... |.. ....+.++.++.||+...
T Consensus 77 ~g~vyv~~~----------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~---------- 136 (677)
T 1kb0_A 77 DGIMYVSAS----------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW---------- 136 (677)
T ss_dssp TTEEEEECG----------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT----------
T ss_pred CCEEEEECC----------CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC----------
Confidence 788887764 257999999877 4886433210 000 112234556888887642
Q ss_pred eecCeEEEEECCCC--cEEEcccCCCCC-CCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCc--eEEecc
Q 007468 153 HHYKDFWMLDLKTN--QWEQLNLKGCPS-PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKP 226 (602)
Q Consensus 153 ~~~~dv~~yd~~t~--~W~~~~~~~~p~-~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~--W~~v~~ 226 (602)
-..++.+|..+. .|+.-.....+. .....+.++.++.||+..+..... ....|+.||..+.+ |+.-..
T Consensus 137 --dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~----~~g~v~a~D~~tG~~~W~~~~~ 209 (677)
T 1kb0_A 137 --DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYG----VRGYITAYDAETGERKWRWFSV 209 (677)
T ss_dssp --TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTC----CBCEEEEEETTTCCEEEEEESS
T ss_pred --CCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccC----CCCEEEEEECCCCcEEEEeccC
Confidence 146889999877 487643201111 112223355688888754422111 24679999998865 877543
No 58
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=96.03 E-value=0.54 Score=50.18 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=41.3
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEE
Q 007468 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (602)
Q Consensus 134 ~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~ 213 (602)
++.+|+|-| +..|+||..+.+.....-.++|. --++..+.+++|+|-| +..|+
T Consensus 158 ~~~~yfFkG-------------~~yw~yd~~~~~~~~~~w~gi~~---iDAA~~~~g~~YfFkG-----------~~y~r 210 (460)
T 1qhu_A 158 DEGILFFQG-------------NRKWFWDLTTGTKKERSWPAVGN---CTSALRWLGRYYCFQG-----------NQFLR 210 (460)
T ss_dssp SSEEEEEET-------------TEEEEEETTTTEEEEECCTTSCC---CSEEEEETTEEEEEET-----------TEEEE
T ss_pred CCeEEEEec-------------ccEEEEecccceeecccCCCCCc---cchheeeCCceEEEEC-----------CEEEE
Confidence 678898887 35799999988766433333332 3466667899999988 45778
Q ss_pred EECCCC
Q 007468 214 FDLDQF 219 (602)
Q Consensus 214 yd~~t~ 219 (602)
||..+.
T Consensus 211 fd~~~~ 216 (460)
T 1qhu_A 211 FNPVSG 216 (460)
T ss_dssp ECTTTC
T ss_pred EcCccC
Confidence 887543
No 59
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=96.00 E-value=0.025 Score=57.75 Aligned_cols=141 Identities=11% Similarity=0.159 Sum_probs=67.3
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv 158 (602)
++.++++|+. -..+.+||+.++.|..+.... .......++.+ ++.+++.|+.+ ..+
T Consensus 22 ~g~~l~~~~~---------d~~i~iw~~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~s~d-----------~~v 79 (377)
T 3dwl_C 22 QRTEFVTTTA---------TNQVELYEQDGNGWKHARTFS--DHDKIVTCVDWAPKSNRIVTCSQD-----------RNA 79 (377)
T ss_dssp SSSEEECCCS---------SSCBCEEEEETTEEEECCCBC--CCSSCEEEEEECTTTCCEEEEETT-----------SSE
T ss_pred CCCEEEEecC---------CCEEEEEEccCCceEEEEEEe--cCCceEEEEEEeCCCCEEEEEeCC-----------CeE
Confidence 5777888773 246778898888887765532 11222223333 45666777643 347
Q ss_pred EEEECCCCc-EEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCc-eEEeccCCCCCCCC
Q 007468 159 WMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK-WQEIKPRFGSMWPS 234 (602)
Q Consensus 159 ~~yd~~t~~-W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~-W~~v~~~~~~~~P~ 234 (602)
.+||+.+.. |..+.. .........++.+ ++.+++.|+.+ ..+.+||+.+.. |..+..... +.
T Consensus 80 ~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~---~h 145 (377)
T 3dwl_C 80 YVYEKRPDGTWKQTLV--LLRLNRAATFVRWSPNEDKFAVGSGA---------RVISVCYFEQENDWWVSKHLKR---PL 145 (377)
T ss_dssp EEC------CCCCEEE--CCCCSSCEEEEECCTTSSCCEEEESS---------SCEEECCC-----CCCCEEECS---SC
T ss_pred EEEEcCCCCceeeeeE--ecccCCceEEEEECCCCCEEEEEecC---------CeEEEEEECCcccceeeeEeec---cc
Confidence 788887766 433322 1111112222333 45666677653 357777777654 333332210 11
Q ss_pred CccceeEEEe-CCEEEEEcCccCC
Q 007468 235 PRSGFQFFVY-QDEVFLYGGYSKE 257 (602)
Q Consensus 235 ~R~~~~~~~~-~~~Iyv~GG~~~~ 257 (602)
...-.+++.. ++.+++.|+.++.
T Consensus 146 ~~~v~~~~~~~~~~~l~~~~~d~~ 169 (377)
T 3dwl_C 146 RSTILSLDWHPNNVLLAAGCADRK 169 (377)
T ss_dssp CSCEEEEEECTTSSEEEEEESSSC
T ss_pred CCCeEEEEEcCCCCEEEEEeCCCE
Confidence 2222233333 6677788877655
No 60
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=95.99 E-value=1.8 Score=45.07 Aligned_cols=133 Identities=8% Similarity=0.072 Sum_probs=70.9
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCC
Q 007468 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (602)
Q Consensus 156 ~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~ 234 (602)
..+.+||+.+.+-...-. ..... -.+++.. ++..++.|+.+ ..+.+||+.+..-. ... ..
T Consensus 290 ~~i~vwd~~~~~~~~~~~--~~~~~-v~~~~~~~~~~~l~sg~~d---------g~i~vwd~~~~~~~--~~~-----~~ 350 (464)
T 3v7d_B 290 NTLIVWDVAQMKCLYILS--GHTDR-IYSTIYDHERKRCISASMD---------TTIRIWDLENGELM--YTL-----QG 350 (464)
T ss_dssp SCEEEEETTTTEEEEEEC--CCSSC-EEEEEEETTTTEEEEEETT---------SCEEEEETTTTEEE--EEE-----CC
T ss_pred CeEEEEECCCCcEEEEec--CCCCC-EEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCcEE--EEE-----eC
Confidence 358889988765433211 11111 1122222 45666667653 45888998876432 222 11
Q ss_pred CccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEecc
Q 007468 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314 (602)
Q Consensus 235 ~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG 314 (602)
.......+.+.+..++.|+.++. +.+||+.+..-...... .......+...++.+++.|+
T Consensus 351 h~~~v~~~~~~~~~l~s~s~dg~----------------v~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~ 410 (464)
T 3v7d_B 351 HTALVGLLRLSDKFLVSAAADGS----------------IRGWDANDYSRKFSYHH----TNLSAITTFYVSDNILVSGS 410 (464)
T ss_dssp CSSCEEEEEECSSEEEEEETTSE----------------EEEEETTTCCEEEEEEC----TTCCCEEEEEECSSEEEEEE
T ss_pred CCCcEEEEEEcCCEEEEEeCCCc----------------EEEEECCCCceeeeecC----CCCccEEEEEeCCCEEEEec
Confidence 11222334445677777777655 78888876543222211 11222333444677777766
Q ss_pred ccccccccccccccccCeeEEEECCCCc
Q 007468 315 VVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
. +.|.+||+.+.+
T Consensus 411 -d--------------g~i~iwd~~~g~ 423 (464)
T 3v7d_B 411 -E--------------NQFNIYNLRSGK 423 (464)
T ss_dssp -T--------------TEEEEEETTTCC
T ss_pred -C--------------CeEEEEECCCCc
Confidence 2 348999988764
No 61
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=95.91 E-value=1.7 Score=43.97 Aligned_cols=193 Identities=9% Similarity=-0.043 Sum_probs=97.1
Q ss_pred EEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 007468 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (602)
Q Consensus 73 s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~ 151 (602)
++.+.| ++.++++|+. -..+.+||........+... ...-.+++.. ++..++.|+..
T Consensus 113 ~~~~s~--~~~~l~~~~~---------dg~i~i~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d------- 170 (425)
T 1r5m_A 113 CLAWSH--DGNSIVTGVE---------NGELRLWNKTGALLNVLNFH----RAPIVSVKWNKDGTHIISMDVE------- 170 (425)
T ss_dssp EEEECT--TSSEEEEEET---------TSCEEEEETTSCEEEEECCC----CSCEEEEEECTTSSEEEEEETT-------
T ss_pred EEEEcC--CCCEEEEEeC---------CCeEEEEeCCCCeeeeccCC----CccEEEEEECCCCCEEEEEecC-------
Confidence 334444 5677777762 23678888555444444321 1122223332 45555566542
Q ss_pred ceecCeEEEEECCCCcEEEcccCCCCCCC--------------cccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECC
Q 007468 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPR--------------SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (602)
Q Consensus 152 ~~~~~dv~~yd~~t~~W~~~~~~~~p~~R--------------~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~ 217 (602)
..+.+||+.+......-. .+... .-.+++...+..+++|+.+ ..+.+||+.
T Consensus 171 ----~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------g~i~~~d~~ 235 (425)
T 1r5m_A 171 ----NVTILWNVISGTVMQHFE--LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK---------GAIFVYQIT 235 (425)
T ss_dssp ----CCEEEEETTTTEEEEEEC--CC---------------CCCBSCCEEEETTEEEEECGG---------GCEEEEETT
T ss_pred ----CeEEEEECCCCcEEEEee--ccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC---------CeEEEEEcC
Confidence 347788888776543322 11111 0222333334446666643 468899988
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCC
Q 007468 218 QFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGP 296 (602)
Q Consensus 218 t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~ 296 (602)
+..-...-.. ....-.+++.. ++.+++.|+.++. +.+||+.+......-. ...
T Consensus 236 ~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~~~~~~~----~~~ 289 (425)
T 1r5m_A 236 EKTPTGKLIG------HHGPISVLEFNDTNKLLLSASDDGT----------------LRIWHGGNGNSQNCFY----GHS 289 (425)
T ss_dssp CSSCSEEECC------CSSCEEEEEEETTTTEEEEEETTSC----------------EEEECSSSBSCSEEEC----CCS
T ss_pred CCceeeeecc------CCCceEEEEECCCCCEEEEEcCCCE----------------EEEEECCCCccceEec----CCC
Confidence 7543222111 11111223333 5667777776655 7788876654322211 112
Q ss_pred CceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCCc
Q 007468 297 RAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 297 R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
..-.++++..+.+++.|+.. ..|.+||+.+..
T Consensus 290 ~~i~~~~~~~~~~l~~~~~d--------------~~i~i~d~~~~~ 321 (425)
T 1r5m_A 290 QSIVSASWVGDDKVISCSMD--------------GSVRLWSLKQNT 321 (425)
T ss_dssp SCEEEEEEETTTEEEEEETT--------------SEEEEEETTTTE
T ss_pred ccEEEEEECCCCEEEEEeCC--------------CcEEEEECCCCc
Confidence 22344555533366666643 358999987654
No 62
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.90 E-value=0.36 Score=55.06 Aligned_cols=180 Identities=10% Similarity=0.023 Sum_probs=101.3
Q ss_pred CcEEEEEcCCCcEEEecCCC-CCC-CceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccC-CC
Q 007468 101 GDLYRYDVEKQEWKVISSPN-SPP-PRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK-GC 176 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~-~P~-~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~-~~ 176 (602)
+-|++||+.+++|..+.... .+. ...-.+++.. ++.|||-.- ...+++||+.+.++...... ++
T Consensus 469 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~------------~~Gl~~~~~~~~~~~~~~~~~~l 536 (781)
T 3v9f_A 469 AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF------------GGGVGIYTPDMQLVRKFNQYEGF 536 (781)
T ss_dssp TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEES------------SSCEEEECTTCCEEEEECTTTTC
T ss_pred CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEc------------CCCEEEEeCCCCeEEEccCCCCC
Confidence 46889999999887765321 011 1111222222 466776431 13478999999999887542 22
Q ss_pred CCCCcccEEEE-ECCEEEEEcCccCCCCCeeeeceE-EEEECCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcC
Q 007468 177 PSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDL-YVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGG 253 (602)
Q Consensus 177 p~~R~~h~~~~-~~~~Lyv~GG~~~~~~~~~~~~~v-~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG 253 (602)
|.... .+++. -++.||+-.. ..+ ++||+.+.++....... .+|.... ++++.. ++.||+.+.
T Consensus 537 ~~~~i-~~i~~d~~g~lWi~T~-----------~Glv~~~d~~~~~~~~~~~~~--gl~~~~i-~~i~~d~~g~lW~~t~ 601 (781)
T 3v9f_A 537 CSNTI-NQIYRSSKGQMWLATG-----------EGLVCFPSARNFDYQVFQRKE--GLPNTHI-RAISEDKNGNIWASTN 601 (781)
T ss_dssp SCSCE-EEEEECTTSCEEEEET-----------TEEEEESCTTTCCCEEECGGG--TCSCCCC-CEEEECSSSCEEEECS
T ss_pred CCCee-EEEEECCCCCEEEEEC-----------CCceEEECCCCCcEEEccccC--CCCCceE-EEEEECCCCCEEEEcC
Confidence 22211 12222 1567776422 345 88999998888775431 1233222 344443 678888653
Q ss_pred ccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCcee-EEEEECCeEEEeccccccccccccccccccCe
Q 007468 254 YSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF-SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNE 332 (602)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~-s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~nd 332 (602)
.. +.+|++.+.++.......-+|...+.. +++...+-.+.|||..+
T Consensus 602 --~G----------------l~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~G--------------- 648 (781)
T 3v9f_A 602 --TG----------------ISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYFGSING--------------- 648 (781)
T ss_dssp --SC----------------EEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEEEETTE---------------
T ss_pred --Cc----------------eEEEECCCCceEEecccCCccccccccCceEECCCCEEEEECCCc---------------
Confidence 22 789999999988875432234433333 34444344556677644
Q ss_pred eEEEECCC
Q 007468 333 LYGFQLDN 340 (602)
Q Consensus 333 v~~yd~~t 340 (602)
+.+|+|..
T Consensus 649 l~~f~p~~ 656 (781)
T 3v9f_A 649 LCFFNPDI 656 (781)
T ss_dssp EEEECSCC
T ss_pred eEEEChhh
Confidence 67777764
No 63
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.88 E-value=0.68 Score=48.30 Aligned_cols=183 Identities=12% Similarity=0.093 Sum_probs=98.3
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~ 160 (602)
++.+++.|+. -..+.+||+.+.+-...-... ...-.++.+.+.+++.|+.+ ..+.+
T Consensus 128 ~g~~l~sg~~---------dg~i~vwd~~~~~~~~~~~~h----~~~v~~~~~~~~~l~s~~~d-----------g~i~v 183 (445)
T 2ovr_B 128 CGNRIVSGSD---------DNTLKVWSAVTGKCLRTLVGH----TGGVWSSQMRDNIIISGSTD-----------RTLKV 183 (445)
T ss_dssp ETTEEEEEET---------TSCEEEEETTTCCEEEECCCC----SSCEEEEEEETTEEEEEETT-----------SCEEE
T ss_pred cCCEEEEEEC---------CCcEEEEECCCCcEEEEEcCC----CCCEEEEEecCCEEEEEeCC-----------CeEEE
Confidence 4566667762 247889999877654332211 11122333345566666653 35788
Q ss_pred EECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCcccee
Q 007468 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (602)
Q Consensus 161 yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~ 240 (602)
||+.+.+-...-. .....-.++.+++..++.|+.+ ..+.+||+.+..-...-.. ......
T Consensus 184 wd~~~~~~~~~~~----~h~~~v~~~~~~~~~l~s~s~d---------g~i~~wd~~~~~~~~~~~~-------~~~~v~ 243 (445)
T 2ovr_B 184 WNAETGECIHTLY----GHTSTVRCMHLHEKRVVSGSRD---------ATLRVWDIETGQCLHVLMG-------HVAAVR 243 (445)
T ss_dssp EETTTTEEEEEEC----CCSSCEEEEEEETTEEEEEETT---------SEEEEEESSSCCEEEEEEC-------CSSCEE
T ss_pred EECCcCcEEEEEC----CCCCcEEEEEecCCEEEEEeCC---------CEEEEEECCCCcEEEEEcC-------CcccEE
Confidence 9988875432211 1111223344455556666653 4688899887653322111 111122
Q ss_pred EEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEecccccccc
Q 007468 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEM 320 (602)
Q Consensus 241 ~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~ 320 (602)
++.+++.+++.|+.++. +.+||+.+..-...-. + ....- .++..++..++.|+.+
T Consensus 244 ~~~~~~~~l~~~~~dg~----------------i~iwd~~~~~~~~~~~-~---~~~~v-~~~~~~~~~l~~~~~d---- 298 (445)
T 2ovr_B 244 CVQYDGRRVVSGAYDFM----------------VKVWDPETETCLHTLQ-G---HTNRV-YSLQFDGIHVVSGSLD---- 298 (445)
T ss_dssp EEEECSSCEEEEETTSC----------------EEEEEGGGTEEEEEEC-C---CSSCE-EEEEECSSEEEEEETT----
T ss_pred EEEECCCEEEEEcCCCE----------------EEEEECCCCcEeEEec-C---CCCce-EEEEECCCEEEEEeCC----
Confidence 33347777888887665 7788876654322211 1 11112 2233377777777764
Q ss_pred ccccccccccCeeEEEECCCCc
Q 007468 321 KGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 321 ~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
+.|.+||+.+..
T Consensus 299 ----------~~i~i~d~~~~~ 310 (445)
T 2ovr_B 299 ----------TSIRVWDVETGN 310 (445)
T ss_dssp ----------SCEEEEETTTCC
T ss_pred ----------CeEEEEECCCCC
Confidence 348889987764
No 64
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=95.85 E-value=0.38 Score=48.96 Aligned_cols=196 Identities=12% Similarity=0.016 Sum_probs=103.4
Q ss_pred ceEEEEecCCCC-EEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEEC--CEEEEEeCccCCC
Q 007468 71 NCSLNINPLKET-ELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK--NYLYIFGGEFTSP 147 (602)
Q Consensus 71 ~~s~~~~~~~~~-~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~--~~iyV~GG~~~~~ 147 (602)
-.++.+.| ++ .+++.|+. -..|.+||+.+.......... .....-.+++... +.+++.|+..
T Consensus 76 v~~~~~~~--~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d--- 140 (383)
T 3ei3_B 76 VTSLEWHP--THPTTVAVGSK---------GGDIILWDYDVQNKTSFIQGM-GPGDAITGMKFNQFNTNQLFVSSIR--- 140 (383)
T ss_dssp EEEEEECS--SCTTEEEEEEB---------TSCEEEEETTSTTCEEEECCC-STTCBEEEEEEETTEEEEEEEEETT---
T ss_pred EEEEEECC--CCCCEEEEEcC---------CCeEEEEeCCCcccceeeecC-CcCCceeEEEeCCCCCCEEEEEeCC---
Confidence 33445554 44 68888873 247889999988776553311 1112222333333 3566666542
Q ss_pred CCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEec
Q 007468 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (602)
Q Consensus 148 ~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~ 225 (602)
..+.+||+.+.....+... ........++.+ ++.+++.|+.+ ..+..||+....-..+.
T Consensus 141 --------~~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~ 201 (383)
T 3ei3_B 141 --------GATTLRDFSGSVIQVFAKT--DSWDYWYCCVDVSVSRQMLATGDST---------GRLLLLGLDGHEIFKEK 201 (383)
T ss_dssp --------TEEEEEETTSCEEEEEECC--CCSSCCEEEEEEETTTTEEEEEETT---------SEEEEEETTSCEEEEEE
T ss_pred --------CEEEEEECCCCceEEEecc--CCCCCCeEEEEECCCCCEEEEECCC---------CCEEEEECCCCEEEEec
Confidence 3578899988776655431 111111222222 55667777653 46888898544333332
Q ss_pred cCCCCCCCCCccceeEEEe-CCE-EEEEcCccCCCCCccCCCCCCceeeeEEEEeCCC----CeeEEeecCCCCCCCCce
Q 007468 226 PRFGSMWPSPRSGFQFFVY-QDE-VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT----WEWSKVKKIGMPPGPRAG 299 (602)
Q Consensus 226 ~~~~~~~P~~R~~~~~~~~-~~~-Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t----~~W~~l~~~g~~P~~R~~ 299 (602)
.. ...-.+++.. ++. +++.|+.++. +.+||+.+ ........ ....-
T Consensus 202 ~h-------~~~v~~~~~~~~~~~~l~s~~~d~~----------------i~iwd~~~~~~~~~~~~~~~-----~~~~v 253 (383)
T 3ei3_B 202 LH-------KAKVTHAEFNPRCDWLMATSSVDAT----------------VKLWDLRNIKDKNSYIAEMP-----HEKPV 253 (383)
T ss_dssp CS-------SSCEEEEEECSSCTTEEEEEETTSE----------------EEEEEGGGCCSTTCEEEEEE-----CSSCE
T ss_pred cC-------CCcEEEEEECCCCCCEEEEEeCCCE----------------EEEEeCCCCCcccceEEEec-----CCCce
Confidence 22 1111222333 344 7778877655 77888765 33322211 11122
Q ss_pred eEEEEE--CCeEEEeccccccccccccccccccCeeEEEECCCCc
Q 007468 300 FSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 300 ~s~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
.++++. ++.+++.|+.+ +.|.+||+.+..
T Consensus 254 ~~~~~s~~~~~~l~~~~~d--------------~~i~iwd~~~~~ 284 (383)
T 3ei3_B 254 NAAYFNPTDSTKLLTTDQR--------------NEIRVYSSYDWS 284 (383)
T ss_dssp EEEEECTTTSCEEEEEESS--------------SEEEEEETTBTT
T ss_pred EEEEEcCCCCCEEEEEcCC--------------CcEEEEECCCCc
Confidence 333333 45677777653 458899987653
No 65
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=95.84 E-value=0.27 Score=48.41 Aligned_cols=193 Identities=13% Similarity=0.094 Sum_probs=99.4
Q ss_pred EEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcE----EEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCC
Q 007468 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW----KVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSP 147 (602)
Q Consensus 73 s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W----~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~ 147 (602)
++.+.| ++++++.|+. ..+.+||..+... ..+... +....-.+++.. ++.++++|+..
T Consensus 56 ~~~~~~--~~~~l~~~~d----------g~i~iw~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d--- 118 (337)
T 1gxr_A 56 AVTISN--PTRHVYTGGK----------GCVKVWDISHPGNKSPVSQLDCL--NRDNYIRSCKLLPDGCTLIVGGEA--- 118 (337)
T ss_dssp EEEECS--SSSEEEEECB----------SEEEEEETTSTTCCSCSEEEECS--CTTSBEEEEEECTTSSEEEEEESS---
T ss_pred EEEEec--CCcEEEEcCC----------CeEEEEECCCCCceeeeeccccc--CCCCcEEEEEEcCCCCEEEEEcCC---
Confidence 344454 5677777661 3678888876542 122110 111112222222 45566666542
Q ss_pred CCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEec
Q 007468 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (602)
Q Consensus 148 ~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~ 225 (602)
..+.+||+.+........ .........++.+ ++.+++.|+.+ ..+.+||+.+......-
T Consensus 119 --------~~i~~~d~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~v~~~d~~~~~~~~~~ 179 (337)
T 1gxr_A 119 --------STLSIWDLAAPTPRIKAE--LTSSAPACYALAISPDSKVCFSCCSD---------GNIAVWDLHNQTLVRQF 179 (337)
T ss_dssp --------SEEEEEECCCC--EEEEE--EECSSSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTTEEEEEE
T ss_pred --------CcEEEEECCCCCcceeee--cccCCCceEEEEECCCCCEEEEEeCC---------CcEEEEeCCCCceeeee
Confidence 468889998887544332 1111112222333 55666677653 45888999876543322
Q ss_pred cCCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEE
Q 007468 226 PRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (602)
Q Consensus 226 ~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~ 304 (602)
.. ....-.+++.. ++.+++.|+.++. +.+||+.+..-...... ...-.++++
T Consensus 180 ~~------~~~~i~~~~~~~~~~~l~~~~~dg~----------------i~~~d~~~~~~~~~~~~-----~~~v~~~~~ 232 (337)
T 1gxr_A 180 QG------HTDGASCIDISNDGTKLWTGGLDNT----------------VRSWDLREGRQLQQHDF-----TSQIFSLGY 232 (337)
T ss_dssp CC------CSSCEEEEEECTTSSEEEEEETTSE----------------EEEEETTTTEEEEEEEC-----SSCEEEEEE
T ss_pred ec------ccCceEEEEECCCCCEEEEEecCCc----------------EEEEECCCCceEeeecC-----CCceEEEEE
Confidence 21 11111223333 6667777776554 88899877654333221 112233444
Q ss_pred E-CCeEEEeccccccccccccccccccCeeEEEECCCCc
Q 007468 305 H-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 305 ~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
. ++.++++|+.. ..|.+||+.+..
T Consensus 233 s~~~~~l~~~~~~--------------~~i~~~~~~~~~ 257 (337)
T 1gxr_A 233 CPTGEWLAVGMES--------------SNVEVLHVNKPD 257 (337)
T ss_dssp CTTSSEEEEEETT--------------SCEEEEETTSSC
T ss_pred CCCCCEEEEEcCC--------------CcEEEEECCCCC
Confidence 3 56677777643 348899988765
No 66
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=95.84 E-value=0.35 Score=49.93 Aligned_cols=180 Identities=15% Similarity=0.083 Sum_probs=89.8
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R 180 (602)
..+.+||+.+.+....-... .....++.+++.+++.|+.. ..+.+||+.+..-..... ....
T Consensus 156 g~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~---~~~~ 217 (401)
T 4aez_A 156 GLVDIYDVESQTKLRTMAGH----QARVGCLSWNRHVLSSGSRS-----------GAIHHHDVRIANHQIGTL---QGHS 217 (401)
T ss_dssp SCEEEEETTTCCEEEEECCC----SSCEEEEEEETTEEEEEETT-----------SEEEEEETTSSSCEEEEE---ECCS
T ss_pred CeEEEEECcCCeEEEEecCC----CCceEEEEECCCEEEEEcCC-----------CCEEEEecccCcceeeEE---cCCC
Confidence 36788888877654332211 11222333455666676643 457888887432111111 0111
Q ss_pred cccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcC--c
Q 007468 181 SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGG--Y 254 (602)
Q Consensus 181 ~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG--~ 254 (602)
..-.++.+ ++.+++.|+.+ ..|.+||+.+..-...-.. ....-.+++.. +..+++.|| .
T Consensus 218 ~~v~~~~~~~~~~~l~s~~~d---------~~v~iwd~~~~~~~~~~~~------~~~~v~~~~~~p~~~~ll~~~~gs~ 282 (401)
T 4aez_A 218 SEVCGLAWRSDGLQLASGGND---------NVVQIWDARSSIPKFTKTN------HNAAVKAVAWCPWQSNLLATGGGTM 282 (401)
T ss_dssp SCEEEEEECTTSSEEEEEETT---------SCEEEEETTCSSEEEEECC------CSSCCCEEEECTTSTTEEEEECCTT
T ss_pred CCeeEEEEcCCCCEEEEEeCC---------CeEEEccCCCCCccEEecC------CcceEEEEEECCCCCCEEEEecCCC
Confidence 11222333 56677777753 4688899887543222111 11111223333 556777765 3
Q ss_pred cCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCe-EEEeccccccccccccccccccCe
Q 007468 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKR-ALLFGGVVDMEMKGDVIMSLFLNE 332 (602)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~-lyv~GG~~~~~~~~~~~~~~~~nd 332 (602)
++ .+.+||+.+..-...-.. ...-.++++. ++. |++.+|..+ +.
T Consensus 283 d~----------------~i~i~d~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~g~~d-------------g~ 328 (401)
T 4aez_A 283 DK----------------QIHFWNAATGARVNTVDA-----GSQVTSLIWSPHSKEIMSTHGFPD-------------NN 328 (401)
T ss_dssp TC----------------EEEEEETTTCCEEEEEEC-----SSCEEEEEECSSSSEEEEEECTTT-------------CE
T ss_pred CC----------------EEEEEECCCCCEEEEEeC-----CCcEEEEEECCCCCeEEEEeecCC-------------Cc
Confidence 33 388899877654333221 1112233333 344 444434332 46
Q ss_pred eEEEECCCCceEEeE
Q 007468 333 LYGFQLDNHRWYPLE 347 (602)
Q Consensus 333 v~~yd~~t~~W~~l~ 347 (602)
|.+||+.+.....+.
T Consensus 329 i~v~~~~~~~~~~~~ 343 (401)
T 4aez_A 329 LSIWSYSSSGLTKQV 343 (401)
T ss_dssp EEEEEEETTEEEEEE
T ss_pred EEEEecCCccceeEE
Confidence 899998887666544
No 67
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.088 Score=59.98 Aligned_cols=106 Identities=9% Similarity=0.143 Sum_probs=62.2
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--C--CEEEEEeCccCCCCCCcceecC
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--K--NYLYIFGGEFTSPNQERFHHYK 156 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~--~~iyV~GG~~~~~~~~~~~~~~ 156 (602)
++.+++.||. -..|.+||..+.++..+.... .....-.++.+ . +.+++.|+.+ .
T Consensus 20 dg~~latg~~---------dg~I~vwd~~~~~~~~~~~l~--~h~~~V~~l~~s~~~~~~~l~s~s~D-----------g 77 (753)
T 3jro_A 20 YGKRLATCSS---------DKTIKIFEVEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYD-----------G 77 (753)
T ss_dssp SSCCEEEEET---------TTEEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCTTSCSEEEEEETT-----------S
T ss_pred CCCeEEEEEC---------CCcEEEEecCCCCCccceecc--CCcCceEEEEecCCCCCCEEEEEeCC-----------C
Confidence 4667777762 246888888877777654322 11222223333 2 5677777753 3
Q ss_pred eEEEEECCCCcEEEcccCCCCCCCcccEEEEE--C--CEEEEEcCccCCCCCeeeeceEEEEECCCC
Q 007468 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K--HKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (602)
Q Consensus 157 dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~--~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~ 219 (602)
.+.+||+.++.|..+.. .......-.++.+ + +.+++.|+.+ ..+.+||+.+.
T Consensus 78 ~I~vwd~~~~~~~~~~~--~~~h~~~V~~v~~sp~~~~~~l~sgs~d---------g~I~vwdl~~~ 133 (753)
T 3jro_A 78 KVLIWKEENGRWSQIAV--HAVHSASVNSVQWAPHEYGPLLLVASSD---------GKVSVVEFKEN 133 (753)
T ss_dssp CEEEEEEETTEEEEEEE--ECCCSSCEEEEEECCGGGCSEEEEEETT---------SEEEEEECCSS
T ss_pred eEEEEECCCCccccccc--ccCCCCCeEEEEECCCCCCCEEEEEeCC---------CcEEEEEeecC
Confidence 47888888888776654 2222222333333 3 6677888754 36788888765
No 68
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=95.83 E-value=0.52 Score=47.19 Aligned_cols=203 Identities=10% Similarity=0.014 Sum_probs=98.1
Q ss_pred EEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCC
Q 007468 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (602)
Q Consensus 73 s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~ 150 (602)
.+.+.| ++.+++.|+. -..+.+||+.+..+....... .......++.+ ++.++++|+..
T Consensus 57 ~~~~~~--~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d------ 117 (372)
T 1k8k_C 57 GVDWAP--DSNRIVTCGT---------DRNAYVWTLKGRTWKPTLVIL--RINRAARCVRWAPNEKKFAVGSGS------ 117 (372)
T ss_dssp EEEEET--TTTEEEEEET---------TSCEEEEEEETTEEEEEEECC--CCSSCEEEEEECTTSSEEEEEETT------
T ss_pred EEEEeC--CCCEEEEEcC---------CCeEEEEECCCCeeeeeEEee--cCCCceeEEEECCCCCEEEEEeCC------
Confidence 344454 5667777762 246888999888876543211 11112222333 45566666643
Q ss_pred cceecCeEEEEECCCCc-EEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCC--------
Q 007468 151 RFHHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF-------- 219 (602)
Q Consensus 151 ~~~~~~dv~~yd~~t~~-W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~-------- 219 (602)
..+.+||+.+.. |........+.. ..-.++.+ ++.+++.|+.+ ..+.+||+...
T Consensus 118 -----~~v~i~d~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d---------g~i~~~d~~~~~~~~~~~~ 182 (372)
T 1k8k_C 118 -----RVISICYFEQENDWWVCKHIKKPIR-STVLSLDWHPNSVLLAAGSCD---------FKCRIFSAYIKEVEERPAP 182 (372)
T ss_dssp -----SSEEEEEEETTTTEEEEEEECTTCC-SCEEEEEECTTSSEEEEEETT---------SCEEEEECCCTTTSCCCCC
T ss_pred -----CEEEEEEecCCCcceeeeeeecccC-CCeeEEEEcCCCCEEEEEcCC---------CCEEEEEcccccccccccc
Confidence 234555554433 322222101111 11222333 56677777753 35778885421
Q ss_pred --------ceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecC
Q 007468 220 --------KWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (602)
Q Consensus 220 --------~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~ 290 (602)
.-..+.... .....-.+++.. ++.+++.|+.++. +.+||+.+..-...-..
T Consensus 183 ~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~~~~~~~~ 242 (372)
T 1k8k_C 183 TPWGSKMPFGELMFESS----SSCGWVHGVCFSANGSRVAWVSHDST----------------VCLADADKKMAVATLAS 242 (372)
T ss_dssp BTTBSCCCTTCEEEECC----CCSSCEEEEEECSSSSEEEEEETTTE----------------EEEEEGGGTTEEEEEEC
T ss_pred cccccccchhhheEecC----CCCCeEEEEEECCCCCEEEEEeCCCE----------------EEEEECCCCceeEEEcc
Confidence 111222220 011111222222 5556777776544 77888766543322211
Q ss_pred CCCCCCCceeEEEEE-CCeEEEeccccccccccccccccccCeeEEEECCC--CceEEeEe
Q 007468 291 GMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN--HRWYPLEL 348 (602)
Q Consensus 291 g~~P~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t--~~W~~l~~ 348 (602)
....-.++++. ++.+++.| .. +.|.+|++.+ +.|..+..
T Consensus 243 ----~~~~v~~~~~~~~~~~l~~~-~d--------------~~i~i~~~~~~~~~~~~~~~ 284 (372)
T 1k8k_C 243 ----ETLPLLAVTFITESSLVAAG-HD--------------CFPVLFTYDSAAGKLSFGGR 284 (372)
T ss_dssp ----SSCCEEEEEEEETTEEEEEE-TT--------------SSCEEEEEETTTTEEEECCC
T ss_pred ----CCCCeEEEEEecCCCEEEEE-eC--------------CeEEEEEccCcCceEEEeec
Confidence 11112333443 56655555 32 3478888888 99988765
No 69
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=95.82 E-value=0.7 Score=45.54 Aligned_cols=151 Identities=9% Similarity=0.020 Sum_probs=70.5
Q ss_pred CeEEEEECCC-CcEEEcc--cCCCCCCCcccEEEEE-C-CEEEEEcCccCCCCCeeeeceEEEEECC--CCceEEeccCC
Q 007468 156 KDFWMLDLKT-NQWEQLN--LKGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVFDLD--QFKWQEIKPRF 228 (602)
Q Consensus 156 ~dv~~yd~~t-~~W~~~~--~~~~p~~R~~h~~~~~-~-~~Lyv~GG~~~~~~~~~~~~~v~~yd~~--t~~W~~v~~~~ 228 (602)
..+.+||+.+ .++..+. ....+....-..++.. + ..||+.+.. .+.+.+|++. +..+..+....
T Consensus 151 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~---------~~~i~~~~~~~~~g~~~~~~~~~ 221 (343)
T 1ri6_A 151 DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL---------NSSVDVWELKDPHGNIECVQTLD 221 (343)
T ss_dssp TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT---------TTEEEEEESSCTTSCCEEEEEEE
T ss_pred CEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC---------CCEEEEEEecCCCCcEEEEeecc
Confidence 4588899887 6665432 1101111111122222 3 357776543 2467888874 45554332220
Q ss_pred CCCCCCC----ccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCC--CCeeEEeecCCCCCCCCcee
Q 007468 229 GSMWPSP----RSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR--TWEWSKVKKIGMPPGPRAGF 300 (602)
Q Consensus 229 ~~~~P~~----R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~--t~~W~~l~~~g~~P~~R~~~ 300 (602)
.+|.. .....++.. +..||+.+...+ .+.+|++. +.++..+... +....-.
T Consensus 222 --~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~----------------~i~v~d~~~~~~~~~~~~~~---~~~~~~~ 280 (343)
T 1ri6_A 222 --MMPENFSDTRWAADIHITPDGRHLYACDRTAS----------------LITVFSVSEDGSVLSKEGFQ---PTETQPR 280 (343)
T ss_dssp --CSCTTCCSCCCEEEEEECTTSSEEEEEETTTT----------------EEEEEEECTTSCCEEEEEEE---ECSSSCC
T ss_pred --ccCccccccCCccceEECCCCCEEEEEecCCC----------------EEEEEEEcCCCCceEEeeee---cCCCccc
Confidence 01221 111123333 446777654433 26677766 5556655432 1111122
Q ss_pred EEEEE-CCe-EEEeccccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 301 SMCVH-KKR-ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 301 s~~~~-~~~-lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
++++. +++ ||+.++..+ .-.||.+|+.+..+..+..
T Consensus 281 ~~~~s~dg~~l~~~~~~~~------------~v~v~~~d~~~g~~~~~~~ 318 (343)
T 1ri6_A 281 GFNVDHSGKYLIAAGQKSH------------HISVYEIVGEQGLLHEKGR 318 (343)
T ss_dssp CEEECTTSSEEEEECTTTC------------EEEEEEEETTTTEEEEEEE
T ss_pred eEEECCCCCEEEEecCCCC------------eEEEEEEcCCCceeeEccc
Confidence 34443 344 555443221 1224555777888887665
No 70
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=95.81 E-value=0.3 Score=49.39 Aligned_cols=189 Identities=11% Similarity=0.121 Sum_probs=97.6
Q ss_pred eEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCC
Q 007468 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (602)
Q Consensus 72 ~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~ 149 (602)
..+.+.| ++.+++.||. -..|.+||..+..|............ ...++.+ ++.+++.|+.+.
T Consensus 20 ~~l~~sp--~g~~las~~~---------D~~i~iw~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~s~D~---- 83 (345)
T 3fm0_A 20 WFLAWNP--AGTLLASCGG---------DRRIRIWGTEGDSWICKSVLSEGHQR-TVRKVAWSPCGNYLASASFDA---- 83 (345)
T ss_dssp EEEEECT--TSSCEEEEET---------TSCEEEEEEETTEEEEEEEECSSCSS-CEEEEEECTTSSEEEEEETTS----
T ss_pred EEEEECC--CCCEEEEEcC---------CCeEEEEEcCCCcceeeeeeccccCC-cEEEEEECCCCCEEEEEECCC----
Confidence 4556666 6788888873 24678889888887633211000111 1223333 456667776532
Q ss_pred CcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCC-ceEEecc
Q 007468 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF-KWQEIKP 226 (602)
Q Consensus 150 ~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~-~W~~v~~ 226 (602)
.+.+|+..+..+..+.. +......-.++.+ ++.+++.|+.+ ..+.+||+.+. .+..+..
T Consensus 84 -------~v~iw~~~~~~~~~~~~--~~~h~~~v~~v~~sp~~~~l~s~s~D---------~~v~iwd~~~~~~~~~~~~ 145 (345)
T 3fm0_A 84 -------TTCIWKKNQDDFECVTT--LEGHENEVKSVAWAPSGNLLATCSRD---------KSVWVWEVDEEDEYECVSV 145 (345)
T ss_dssp -------CEEEEEECCC-EEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT---------SCEEEEEECTTSCEEEEEE
T ss_pred -------cEEEEEccCCCeEEEEE--ccCCCCCceEEEEeCCCCEEEEEECC---------CeEEEEECCCCCCeEEEEE
Confidence 35667777766654433 1111111223333 56777777754 35777887654 3333333
Q ss_pred CCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE
Q 007468 227 RFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (602)
Q Consensus 227 ~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~ 305 (602)
.. .....-.+++.. ++.+++.|+.++. +.+||..+..|..+..... ....-.++++.
T Consensus 146 ~~----~h~~~v~~~~~~p~~~~l~s~s~d~~----------------i~~w~~~~~~~~~~~~~~~--h~~~v~~l~~s 203 (345)
T 3fm0_A 146 LN----SHTQDVKHVVWHPSQELLASASYDDT----------------VKLYREEEDDWVCCATLEG--HESTVWSLAFD 203 (345)
T ss_dssp EC----CCCSCEEEEEECSSSSCEEEEETTSC----------------EEEEEEETTEEEEEEEECC--CSSCEEEEEEC
T ss_pred ec----CcCCCeEEEEECCCCCEEEEEeCCCc----------------EEEEEecCCCEEEEEEecC--CCCceEEEEEC
Confidence 21 011111122222 6677778887665 7778887887775543211 11122233333
Q ss_pred -CCeEEEecccc
Q 007468 306 -KKRALLFGGVV 316 (602)
Q Consensus 306 -~~~lyv~GG~~ 316 (602)
++++++.|+.+
T Consensus 204 p~g~~l~s~s~D 215 (345)
T 3fm0_A 204 PSGQRLASCSDD 215 (345)
T ss_dssp TTSSEEEEEETT
T ss_pred CCCCEEEEEeCC
Confidence 56677777754
No 71
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.81 E-value=0.99 Score=47.02 Aligned_cols=154 Identities=11% Similarity=0.057 Sum_probs=78.2
Q ss_pred ECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEE
Q 007468 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLY 212 (602)
Q Consensus 133 ~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~ 212 (602)
+++..++.|+.+ ..+.+||+.+.+-...-. .......++..++.+++.|+.+ ..+.
T Consensus 287 ~~~~~l~~~~~d-----------~~i~i~d~~~~~~~~~~~----~~~~~v~~~~~~~~~l~~~~~d---------g~i~ 342 (445)
T 2ovr_B 287 FDGIHVVSGSLD-----------TSIRVWDVETGNCIHTLT----GHQSLTSGMELKDNILVSGNAD---------STVK 342 (445)
T ss_dssp ECSSEEEEEETT-----------SCEEEEETTTCCEEEEEC----CCCSCEEEEEEETTEEEEEETT---------SCEE
T ss_pred ECCCEEEEEeCC-----------CeEEEEECCCCCEEEEEc----CCcccEEEEEEeCCEEEEEeCC---------CeEE
Confidence 355555666542 347788887765332211 1111222333455566666643 4688
Q ss_pred EEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEee-cCC
Q 007468 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK-KIG 291 (602)
Q Consensus 213 ~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~-~~g 291 (602)
+||+.+..-...-..+ ......-.++.+++.+++.|+.++. +.+||+.+.+....- ...
T Consensus 343 vwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~l~s~~~dg~----------------v~iwd~~~~~~~~~~~~~~ 402 (445)
T 2ovr_B 343 IWDIKTGQCLQTLQGP----NKHQSAVTCLQFNKNFVITSSDDGT----------------VKLWDLKTGEFIRNLVTLE 402 (445)
T ss_dssp EEETTTCCEEEEECST----TSCSSCEEEEEECSSEEEEEETTSE----------------EEEEETTTCCEEEEEEECT
T ss_pred EEECCCCcEEEEEccC----CCCCCCEEEEEECCCEEEEEeCCCe----------------EEEEECCCCceeeeeeccc
Confidence 8998776532221110 0111222233446777888887665 888998877654432 110
Q ss_pred CCCCCCceeEEEEE-CCeEEEeccccccccccccccccccCeeEEEECCC
Q 007468 292 MPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (602)
Q Consensus 292 ~~P~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t 340 (602)
..+..-.-.++++. ++.++++|+.++. .-..|++||...
T Consensus 403 ~~~~~~~v~~~~~s~~~~~la~~~~dg~----------~~~~l~v~df~~ 442 (445)
T 2ovr_B 403 SGGSGGVVWRIRASNTKLVCAVGSRNGT----------EETKLLVLDFDV 442 (445)
T ss_dssp TGGGTCEEEEEEECSSEEEEEEECSSSS----------SCCEEEEEECCC
T ss_pred cCCCCceEEEEEecCCEEEEEEcccCCC----------CccEEEEEECCC
Confidence 00111112233333 4556677776542 134588888764
No 72
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=95.79 E-value=0.86 Score=51.96 Aligned_cols=187 Identities=8% Similarity=0.052 Sum_probs=102.9
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCC-ceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPP-RSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~-R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~ 178 (602)
.-|++||+.++++..+.......+ ..-.+++.. ++.|||-.. +.+++||+.+.+|+.+.....+.
T Consensus 427 ~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-------------~Gl~~~~~~~~~~~~~~~~~~~~ 493 (795)
T 4a2l_A 427 GGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-------------SALVRFNPEQRSFTTIEKEKDGT 493 (795)
T ss_dssp TEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-------------SCEEEEETTTTEEEECCBCTTCC
T ss_pred CceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-------------CceeEEeCCCCeEEEcccccccc
Confidence 357899999998887754221111 111222222 466766432 34889999999998876421111
Q ss_pred CC--cccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccC-CCCCCCCCccceeEEEe-CCEEEEEc
Q 007468 179 PR--SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR-FGSMWPSPRSGFQFFVY-QDEVFLYG 252 (602)
Q Consensus 179 ~R--~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~-~~~~~P~~R~~~~~~~~-~~~Iyv~G 252 (602)
.. ....++.. ++.|||-.. ..+++||+.+..+ .+... ....++.. .-.+++.. ++.|||..
T Consensus 494 ~~~~~~i~~i~~d~~g~lWigt~-----------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~-~i~~i~~d~~g~lWigT 560 (795)
T 4a2l_A 494 PVVSKQITTLFRDSHKRLWIGGE-----------EGLSVFKQEGLDI-QKASILPVSNVTKL-FTNCIYEASNGIIWVGT 560 (795)
T ss_dssp BCCCCCEEEEEECTTCCEEEEES-----------SCEEEEEEETTEE-EECCCSCSCGGGGS-CEEEEEECTTSCEEEEE
T ss_pred ccCCceEEEEEECCCCCEEEEeC-----------CceEEEeCCCCeE-EEecCCCCCCCCCC-eeEEEEECCCCCEEEEe
Confidence 11 11112222 567776432 3588899988888 44321 00001111 11222222 67788743
Q ss_pred CccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEeccccccccccccccccccC
Q 007468 253 GYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLN 331 (602)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~n 331 (602)
.. . +++||+.+.+++.......+|... -.+++.- ++.|++.+. +
T Consensus 561 ~~--G----------------l~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lWi~t~----------------~ 605 (795)
T 4a2l_A 561 RE--G----------------FYCFNEKDKQIKRYNTTNGLPNNV-VYGILEDSFGRLWLSTN----------------R 605 (795)
T ss_dssp SS--C----------------EEEEETTTTEEEEECGGGTCSCSC-EEEEEECTTSCEEEEET----------------T
T ss_pred CC--C----------------ceeECCCCCcEEEeCCCCCCchhh-eEEEEECCCCCEEEEcC----------------C
Confidence 21 3 889999999988875432234332 2333333 466776542 2
Q ss_pred eeEEEECCCCceEEeEe
Q 007468 332 ELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 332 dv~~yd~~t~~W~~l~~ 348 (602)
-|.+||+.+.++..+..
T Consensus 606 Gl~~~~~~~~~~~~~~~ 622 (795)
T 4a2l_A 606 GISCFNPETEKFRNFTE 622 (795)
T ss_dssp EEEEEETTTTEEEEECG
T ss_pred ceEEEcCCCCcEEEcCC
Confidence 38899999988876654
No 73
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=95.76 E-value=0.34 Score=48.28 Aligned_cols=129 Identities=12% Similarity=0.018 Sum_probs=70.1
Q ss_pred eEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCC
Q 007468 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (602)
Q Consensus 72 ~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~ 150 (602)
.+.++.+ ++.||+.+.. ...|++||+.+.++..+... ....-++++.. ++.+||.......
T Consensus 48 ~~~~~~~--~g~l~~~~~~---------~~~i~~~d~~~~~~~~~~~~---~~~~~~~i~~~~dg~l~v~~~~~~~---- 109 (333)
T 2dg1_A 48 EGLNFDR--QGQLFLLDVF---------EGNIFKINPETKEIKRPFVS---HKANPAAIKIHKDGRLFVCYLGDFK---- 109 (333)
T ss_dssp EEEEECT--TSCEEEEETT---------TCEEEEECTTTCCEEEEEEC---SSSSEEEEEECTTSCEEEEECTTSS----
T ss_pred cCcEECC--CCCEEEEECC---------CCEEEEEeCCCCcEEEEeeC---CCCCcceEEECCCCcEEEEeCCCCC----
Confidence 3444444 6778887652 24789999999988765421 12223333333 5678877543211
Q ss_pred cceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEec
Q 007468 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (602)
Q Consensus 151 ~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~ 225 (602)
....+++||+.+.....+... ......-..+++. ++.||+....... ......|++||+.+.....+.
T Consensus 110 ---~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~---~~~~~~l~~~~~~~~~~~~~~ 178 (333)
T 2dg1_A 110 ---STGGIFAATENGDNLQDIIED-LSTAYCIDDMVFDSKGGFYFTDFRGYS---TNPLGGVYYVSPDFRTVTPII 178 (333)
T ss_dssp ---SCCEEEEECTTSCSCEEEECS-SSSCCCEEEEEECTTSCEEEEECCCBT---TBCCEEEEEECTTSCCEEEEE
T ss_pred ---CCceEEEEeCCCCEEEEEEcc-CccCCcccceEECCCCCEEEEeccccc---cCCCceEEEEeCCCCEEEEee
Confidence 124689999988876533211 1111111222222 5678875432111 012357999998877666553
No 74
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.76 E-value=0.81 Score=50.29 Aligned_cols=119 Identities=11% Similarity=0.088 Sum_probs=68.1
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEc-CCC--cEEEecCCCC---CCC---ceeeEEEEECCEEEEEeCccCCCCCCc
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDV-EKQ--EWKVISSPNS---PPP---RSAHQAVSWKNYLYIFGGEFTSPNQER 151 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~-~~~--~W~~l~~~~~---P~~---R~~hs~~~~~~~iyV~GG~~~~~~~~~ 151 (602)
++.||+.... .+.|++||. .+. .|+.-..... +.+ ....+.++.++.||+...
T Consensus 62 ~g~vyv~~~~---------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--------- 123 (571)
T 2ad6_A 62 GDMMYVHSAF---------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA--------- 123 (571)
T ss_dssp TTEEEEECST---------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---------
T ss_pred CCEEEEEeCC---------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC---------
Confidence 7888887651 247999999 766 5886432110 000 012234566888888643
Q ss_pred ceecCeEEEEECCCC--cEEEcccCCCCCC-CcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCc--eEEec
Q 007468 152 FHHYKDFWMLDLKTN--QWEQLNLKGCPSP-RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIK 225 (602)
Q Consensus 152 ~~~~~dv~~yd~~t~--~W~~~~~~~~p~~-R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~--W~~v~ 225 (602)
-..++.+|..+. .|+.-... .+.. ....+-++.++.||+-.+..... .-..|+.||+.+.+ |+.-.
T Consensus 124 ---dg~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~P~v~~g~v~vg~~~~~~~----~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 124 ---NGHLLALDAKTGKINWEVEVCD-PKVGSTLTQAPFVAKDTVLMGCSGAELG----VRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp ---TSEEEEEETTTCCEEEEEECCC-GGGTCBCCSCCEEETTEEEEECBCGGGT----CCCEEEEEETTTCCEEEEEES
T ss_pred ---CCEEEEEECCCCCEEEEecCCC-CCccceeccCCEEECCEEEEEecCCccC----CCCEEEEEECCCCcEEEEEcc
Confidence 145889999887 58754221 0101 11223345688888754321100 13579999998764 87654
No 75
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.70 E-value=0.55 Score=53.08 Aligned_cols=194 Identities=8% Similarity=-0.040 Sum_probs=99.9
Q ss_pred EEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 007468 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (602)
Q Consensus 73 s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~ 151 (602)
++.+.| ++.++++|+. .+.|.+||..++.....-... .... .+++.. ++..+++|+..
T Consensus 18 ~i~~sp--~~~~la~~~~---------~g~v~iwd~~~~~~~~~~~~~--~~~v-~~~~~s~~~~~l~~~~~d------- 76 (814)
T 3mkq_A 18 GIDFHP--TEPWVLTTLY---------SGRVEIWNYETQVEVRSIQVT--ETPV-RAGKFIARKNWIIVGSDD------- 76 (814)
T ss_dssp EEEECS--SSSEEEEEET---------TSEEEEEETTTTEEEEEEECC--SSCE-EEEEEEGGGTEEEEEETT-------
T ss_pred EEEECC--CCCEEEEEeC---------CCEEEEEECCCCceEEEEecC--CCcE-EEEEEeCCCCEEEEEeCC-------
Confidence 344555 5677777762 247889998887654332211 1111 222222 45566666642
Q ss_pred ceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCC
Q 007468 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (602)
Q Consensus 152 ~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~ 229 (602)
..+.+||+.+......-. ... ..-.++.+ ++..++.|+.+ ..+.+||+.+. |.......
T Consensus 77 ----g~i~vw~~~~~~~~~~~~--~~~--~~v~~~~~s~~~~~l~~~~~d---------g~i~vw~~~~~-~~~~~~~~- 137 (814)
T 3mkq_A 77 ----FRIRVFNYNTGEKVVDFE--AHP--DYIRSIAVHPTKPYVLSGSDD---------LTVKLWNWENN-WALEQTFE- 137 (814)
T ss_dssp ----SEEEEEETTTCCEEEEEE--CCS--SCEEEEEECSSSSEEEEEETT---------SEEEEEEGGGT-SEEEEEEE-
T ss_pred ----CeEEEEECCCCcEEEEEe--cCC--CCEEEEEEeCCCCEEEEEcCC---------CEEEEEECCCC-ceEEEEEc-
Confidence 458889998887644322 111 11222333 45556666643 36788888765 22222220
Q ss_pred CCCCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE--
Q 007468 230 SMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-- 305 (602)
Q Consensus 230 ~~~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-- 305 (602)
.....-.+++.. ++.+++.|+.++. +.+||+.+..-...... ........+++.
T Consensus 138 ---~~~~~v~~~~~~p~~~~~l~~~~~dg~----------------v~vwd~~~~~~~~~~~~---~~~~~v~~~~~~~~ 195 (814)
T 3mkq_A 138 ---GHEHFVMCVAFNPKDPSTFASGCLDRT----------------VKVWSLGQSTPNFTLTT---GQERGVNYVDYYPL 195 (814)
T ss_dssp ---CCSSCEEEEEEETTEEEEEEEEETTSE----------------EEEEETTCSSCSEEEEC---CCTTCCCEEEECCS
T ss_pred ---CCCCcEEEEEEEcCCCCEEEEEeCCCe----------------EEEEECCCCcceeEEec---CCCCCEEEEEEEEC
Confidence 111111223333 4567788777655 78888765432222111 111222233333
Q ss_pred -CCeEEEeccccccccccccccccccCeeEEEECCCCc
Q 007468 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 306 -~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
++.++++|+.. ..|.+||+.+..
T Consensus 196 ~~~~~l~~~~~d--------------g~i~~~d~~~~~ 219 (814)
T 3mkq_A 196 PDKPYMITASDD--------------LTIKIWDYQTKS 219 (814)
T ss_dssp TTCCEEEEECTT--------------SEEEEEETTTTE
T ss_pred CCCCEEEEEeCC--------------CEEEEEECCCCc
Confidence 56677777753 358889987654
No 76
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=95.67 E-value=1.2 Score=48.38 Aligned_cols=102 Identities=14% Similarity=0.136 Sum_probs=56.2
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEE-ecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCe
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV-ISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKD 157 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~-l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~d 157 (602)
++.+|+.+.. .+.|.++|..+++... +..+. .-|.+++. +..||+.+.- +.
T Consensus 148 ~~~~~vs~~~---------d~~V~v~D~~t~~~~~~i~~g~-----~~~~v~~spdg~~l~v~~~d------------~~ 201 (543)
T 1nir_A 148 PNLFSVTLRD---------AGQIALVDGDSKKIVKVIDTGY-----AVHISRMSASGRYLLVIGRD------------AR 201 (543)
T ss_dssp GGEEEEEEGG---------GTEEEEEETTTCCEEEEEECST-----TEEEEEECTTSCEEEEEETT------------SE
T ss_pred CCEEEEEEcC---------CCeEEEEECCCceEEEEEecCc-----ccceEEECCCCCEEEEECCC------------Ce
Confidence 5788887762 3578889999886543 32221 24544443 3567766531 46
Q ss_pred EEEEEC--CCCcEEEcccCCCCCCCcccEEEEE-----CC-EEEEEcCccCCCCCeeeeceEEEEECCCCce
Q 007468 158 FWMLDL--KTNQWEQLNLKGCPSPRSGHRMVLY-----KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (602)
Q Consensus 158 v~~yd~--~t~~W~~~~~~~~p~~R~~h~~~~~-----~~-~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W 221 (602)
+.+||+ .+.+-... .+....-+.+++. ++ +||+ +.+. .+.+.+||..+.+-
T Consensus 202 V~v~D~~~~t~~~~~~----i~~g~~p~~va~sp~~~~dg~~l~v-~~~~--------~~~v~v~D~~t~~~ 260 (543)
T 1nir_A 202 IDMIDLWAKEPTKVAE----IKIGIEARSVESSKFKGYEDRYTIA-GAYW--------PPQFAIMDGETLEP 260 (543)
T ss_dssp EEEEETTSSSCEEEEE----EECCSEEEEEEECCSTTCTTTEEEE-EEEE--------SSEEEEEETTTCCE
T ss_pred EEEEECcCCCCcEEEE----EecCCCcceEEeCCCcCCCCCEEEE-EEcc--------CCeEEEEecccccc
Confidence 889999 66543221 1112222233332 34 4554 3321 35688889887653
No 77
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=95.64 E-value=0.079 Score=55.71 Aligned_cols=115 Identities=11% Similarity=0.075 Sum_probs=61.1
Q ss_pred EEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCC
Q 007468 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (602)
Q Consensus 73 s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~ 150 (602)
++++.|. ++.+++.|+. -..|.+||+.+.....+..... ....-.+++.. ++.+++.|+.+
T Consensus 124 ~l~~~P~-~~~~lasGs~---------dg~i~lWd~~~~~~~~~~~~~g-H~~~V~~l~f~p~~~~~l~s~s~D------ 186 (435)
T 4e54_B 124 SLAWHPT-HPSTVAVGSK---------GGDIMLWNFGIKDKPTFIKGIG-AGGSITGLKFNPLNTNQFYASSME------ 186 (435)
T ss_dssp EEEECSS-CTTCEEEEET---------TSCEEEECSSCCSCCEEECCCS-SSCCCCEEEECSSCTTEEEEECSS------
T ss_pred EEEEeCC-CCCEEEEEeC---------CCEEEEEECCCCCceeEEEccC-CCCCEEEEEEeCCCCCEEEEEeCC------
Confidence 4555654 3567888873 2468889987765443322110 11111222222 45566677653
Q ss_pred cceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCC
Q 007468 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (602)
Q Consensus 151 ~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~ 219 (602)
..+.+||+.++....+.... .......++... ++.+++.|+.+ ..|..||+...
T Consensus 187 -----~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~d---------g~i~~wd~~~~ 241 (435)
T 4e54_B 187 -----GTTRLQDFKGNILRVFASSD-TINIWFCSLDVSASSRMVVTGDNV---------GNVILLNMDGK 241 (435)
T ss_dssp -----SCEEEEETTSCEEEEEECCS-SCSCCCCCEEEETTTTEEEEECSS---------SBEEEEESSSC
T ss_pred -----CEEEEeeccCCceeEEeccC-CCCccEEEEEECCCCCEEEEEeCC---------CcEeeeccCcc
Confidence 24678899887665544311 111111222222 66777888754 35788887654
No 78
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=95.63 E-value=0.84 Score=45.35 Aligned_cols=205 Identities=6% Similarity=-0.018 Sum_probs=98.3
Q ss_pred EEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCC
Q 007468 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (602)
Q Consensus 73 s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~ 150 (602)
++++.| ++.+++.|+. -..+.+||+.+..-...-... .....++.+ ++.+++.|+..
T Consensus 37 ~~~~s~--~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~~d------ 95 (369)
T 3zwl_B 37 QVKYNK--EGDLLFSCSK---------DSSASVWYSLNGERLGTLDGH----TGTIWSIDVDCFTKYCVTGSAD------ 95 (369)
T ss_dssp EEEECT--TSCEEEEEES---------SSCEEEEETTTCCEEEEECCC----SSCEEEEEECTTSSEEEEEETT------
T ss_pred EEEEcC--CCCEEEEEeC---------CCEEEEEeCCCchhhhhhhhc----CCcEEEEEEcCCCCEEEEEeCC------
Confidence 344444 5677777762 246889998877654332211 112222333 45566666642
Q ss_pred cceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCCc----eEEec
Q 007468 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK----WQEIK 225 (602)
Q Consensus 151 ~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~----W~~v~ 225 (602)
..+.+||+.+.+....-. .+. .-.+++.. ++..++.++..... ....+.+||+.+.. +....
T Consensus 96 -----g~i~iwd~~~~~~~~~~~--~~~--~v~~~~~~~~~~~l~~~~~~~~~----~~g~i~~~d~~~~~~~~~~~~~~ 162 (369)
T 3zwl_B 96 -----YSIKLWDVSNGQCVATWK--SPV--PVKRVEFSPCGNYFLAILDNVMK----NPGSINIYEIERDSATHELTKVS 162 (369)
T ss_dssp -----TEEEEEETTTCCEEEEEE--CSS--CEEEEEECTTSSEEEEEECCBTT----BCCEEEEEEEEECTTTCCEEEEC
T ss_pred -----CeEEEEECCCCcEEEEee--cCC--CeEEEEEccCCCEEEEecCCccC----CCCEEEEEEecCCccceeecccc
Confidence 458889998876543322 111 11122222 45555555543111 12456777765432 22221
Q ss_pred cCCCCCCC--CCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCC-CeeEEeecCCCCCCCCcee
Q 007468 226 PRFGSMWP--SPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT-WEWSKVKKIGMPPGPRAGF 300 (602)
Q Consensus 226 ~~~~~~~P--~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t-~~W~~l~~~g~~P~~R~~~ 300 (602)
..+...+. ........+.+ ++.+++.|+.++. +.+||+.+ ..-...-.. ....-.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~----------------i~i~d~~~~~~~~~~~~~----~~~~v~ 222 (369)
T 3zwl_B 163 EEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGK----------------ISKYDVSNNYEYVDSIDL----HEKSIS 222 (369)
T ss_dssp SSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSE----------------EEEEETTTTTEEEEEEEC----CSSCEE
T ss_pred cceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCE----------------EEEEECCCCcEeEEEEec----CCCcee
Confidence 11000000 00001222222 5666777776554 88999876 332222111 111223
Q ss_pred EEEEE-CCeEEEeccccccccccccccccccCeeEEEECCCCceEE
Q 007468 301 SMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (602)
Q Consensus 301 s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~ 345 (602)
++++. ++.++++|+.. ..|.+||+.+.....
T Consensus 223 ~~~~~~~~~~l~~~~~d--------------~~i~v~d~~~~~~~~ 254 (369)
T 3zwl_B 223 DMQFSPDLTYFITSSRD--------------TNSFLVDVSTLQVLK 254 (369)
T ss_dssp EEEECTTSSEEEEEETT--------------SEEEEEETTTCCEEE
T ss_pred EEEECCCCCEEEEecCC--------------ceEEEEECCCCceee
Confidence 34443 56667776643 358899988765443
No 79
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=95.62 E-value=0.69 Score=48.28 Aligned_cols=185 Identities=9% Similarity=0.035 Sum_probs=96.3
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~ 178 (602)
..|+++|+....-..+.... .. ..++.+ ++..+++++.... ...++++|+.+.+...+.. .+
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~---~~--v~~~~~Spdg~~la~~s~~~~--------~~~i~~~d~~tg~~~~l~~--~~- 222 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSP---QP--LMSPAWSPDGSKLAYVTFESG--------RSALVIQTLANGAVRQVAS--FP- 222 (415)
T ss_dssp EEEEEEETTSCSCEEEEEES---SC--EEEEEECTTSSEEEEEECTTS--------SCEEEEEETTTCCEEEEEC--CS-
T ss_pred ceEEEEcCCCCCCEEEeCCC---Cc--ceeeEEcCCCCEEEEEEecCC--------CcEEEEEECCCCcEEEeec--CC-
Confidence 46778887765544443211 11 112222 4555555554321 2579999999988776543 11
Q ss_pred CCcccEEEEE--CCE-EEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCc
Q 007468 179 PRSGHRMVLY--KHK-IIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGY 254 (602)
Q Consensus 179 ~R~~h~~~~~--~~~-Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~ 254 (602)
. ...++.+ +++ |++.+.... ...|+.||+.+.....+... +. ...+++.. +++.+++++.
T Consensus 223 -~-~~~~~~~spdg~~la~~~~~~g-------~~~i~~~d~~~~~~~~l~~~-----~~--~~~~~~~spdg~~l~~~s~ 286 (415)
T 2hqs_A 223 -R-HNGAPAFSPDGSKLAFALSKTG-------SLNLYVMDLASGQIRQVTDG-----RS--NNTEPTWFPDSQNLAFTSD 286 (415)
T ss_dssp -S-CEEEEEECTTSSEEEEEECTTS-------SCEEEEEETTTCCEEECCCC-----SS--CEEEEEECTTSSEEEEEEC
T ss_pred -C-cccCEEEcCCCCEEEEEEecCC-------CceEEEEECCCCCEEeCcCC-----CC--cccceEECCCCCEEEEEEC
Confidence 1 1223333 444 554444322 35799999998877655433 11 11222222 4544444432
Q ss_pred cCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEeccccccccccccccccccCee
Q 007468 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNEL 333 (602)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv 333 (602)
... ...+|.+|+.+..-..+... .....++++. +++.+++++..+. ...|
T Consensus 287 ~~g-------------~~~i~~~d~~~~~~~~l~~~-----~~~~~~~~~spdG~~l~~~~~~~g-----------~~~i 337 (415)
T 2hqs_A 287 QAG-------------RPQVYKVNINGGAPQRITWE-----GSQNQDADVSSDGKFMVMVSSNGG-----------QQHI 337 (415)
T ss_dssp TTS-------------SCEEEEEETTSSCCEECCCS-----SSEEEEEEECTTSSEEEEEEECSS-----------CEEE
T ss_pred CCC-------------CcEEEEEECCCCCEEEEecC-----CCcccCeEECCCCCEEEEEECcCC-----------ceEE
Confidence 211 13589999988765544321 1222233333 5666666554320 2469
Q ss_pred EEEECCCCceEEe
Q 007468 334 YGFQLDNHRWYPL 346 (602)
Q Consensus 334 ~~yd~~t~~W~~l 346 (602)
+++|+.+.....+
T Consensus 338 ~~~d~~~~~~~~l 350 (415)
T 2hqs_A 338 AKQDLATGGVQVL 350 (415)
T ss_dssp EEEETTTCCEEEC
T ss_pred EEEECCCCCEEEe
Confidence 9999988776543
No 80
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.37 Score=49.09 Aligned_cols=177 Identities=5% Similarity=-0.079 Sum_probs=86.5
Q ss_pred CcEEEEEcCCCcEEEecCCCCCC------------CceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcE
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPP------------PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQW 168 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~------------~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W 168 (602)
..+.+||+.+......-...... .....+++...+..+++|+.. ..+.+||+.+..-
T Consensus 171 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~i~~~d~~~~~~ 239 (425)
T 1r5m_A 171 NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK-----------GAIFVYQITEKTP 239 (425)
T ss_dssp CCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGG-----------GCEEEEETTCSSC
T ss_pred CeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC-----------CeEEEEEcCCCce
Confidence 45778888777654332211000 000222333334446666643 3588899887632
Q ss_pred EEcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe-CC
Q 007468 169 EQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QD 246 (602)
Q Consensus 169 ~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~ 246 (602)
...-. .. ...-.+++.. ++.+++.|+.+ ..+.+||+.+......-.. ....-.+++.. ++
T Consensus 240 ~~~~~--~~-~~~i~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~------~~~~i~~~~~~~~~ 301 (425)
T 1r5m_A 240 TGKLI--GH-HGPISVLEFNDTNKLLLSASDD---------GTLRIWHGGNGNSQNCFYG------HSQSIVSASWVGDD 301 (425)
T ss_dssp SEEEC--CC-SSCEEEEEEETTTTEEEEEETT---------SCEEEECSSSBSCSEEECC------CSSCEEEEEEETTT
T ss_pred eeeec--cC-CCceEEEEECCCCCEEEEEcCC---------CEEEEEECCCCccceEecC------CCccEEEEEECCCC
Confidence 11111 01 1111222222 55666666643 3578888876543222111 11122233333 55
Q ss_pred EEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEeccccccccccccc
Q 007468 247 EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVI 325 (602)
Q Consensus 247 ~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~ 325 (602)
+++.|+.++. +.+||+.+..-...-.. ....-.++++. ++.++++|+..
T Consensus 302 -~l~~~~~d~~----------------i~i~d~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~d--------- 351 (425)
T 1r5m_A 302 -KVISCSMDGS----------------VRLWSLKQNTLLALSIV----DGVPIFAGRISQDGQKYAVAFMD--------- 351 (425)
T ss_dssp -EEEEEETTSE----------------EEEEETTTTEEEEEEEC----TTCCEEEEEECTTSSEEEEEETT---------
T ss_pred -EEEEEeCCCc----------------EEEEECCCCcEeEeccc----CCccEEEEEEcCCCCEEEEEECC---------
Confidence 7777776554 88899877653333221 11122233333 56677777653
Q ss_pred cccccCeeEEEECCCC
Q 007468 326 MSLFLNELYGFQLDNH 341 (602)
Q Consensus 326 ~~~~~ndv~~yd~~t~ 341 (602)
+.|.+||+.+.
T Consensus 352 -----g~i~i~~~~~~ 362 (425)
T 1r5m_A 352 -----GQVNVYDLKKL 362 (425)
T ss_dssp -----SCEEEEECHHH
T ss_pred -----CeEEEEECCCC
Confidence 35888887653
No 81
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=95.59 E-value=0.53 Score=52.07 Aligned_cols=208 Identities=8% Similarity=-0.104 Sum_probs=101.5
Q ss_pred CcEEEEEcC--C-CcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCC------CcEE
Q 007468 101 GDLYRYDVE--K-QEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT------NQWE 169 (602)
Q Consensus 101 ~dv~~yd~~--~-~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t------~~W~ 169 (602)
..||.+++. . .....+..............+.+ +++.+++......... .......++++|+.+ ....
T Consensus 102 ~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~ 180 (662)
T 3azo_A 102 QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEG-PSDVRRFLAAVPLDGSAAADRSAVR 180 (662)
T ss_dssp CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSS-TTCEEEEEEEEETTSTTTTCGGGSE
T ss_pred CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCC-CCCceeEEEEEECCCCccccCCcee
Confidence 478999987 4 66666654210001122222233 4444444433211000 011346899999988 6666
Q ss_pred Ecc-cCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECC-CC---ceEEeccCCCCCCCCCccceeEEEe
Q 007468 170 QLN-LKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD-QF---KWQEIKPRFGSMWPSPRSGFQFFVY 244 (602)
Q Consensus 170 ~~~-~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~-t~---~W~~v~~~~~~~~P~~R~~~~~~~~ 244 (602)
.+. . .+ ......+..-+++.++|......... --...|+++|+. +. ....+... . .......+..
T Consensus 181 ~l~~~--~~-~~~~~~~~SpDG~~la~~~~~~~~~~-~~~~~i~~~d~~~~g~~~~~~~l~~~-----~-~~~~~~~~~s 250 (662)
T 3azo_A 181 ELSDD--AH-RFVTGPRLSPDGRQAVWLAWDHPRMP-WEGTELKTARVTEDGRFADTRTLLGG-----P-EEAIAQAEWA 250 (662)
T ss_dssp ESSCS--CS-SEECCCEECTTSSEEEEEEECTTCCT-TTCEEEEEEEECTTSCEEEEEEEEEE-----T-TBCEEEEEEC
T ss_pred EEEec--CC-CcccCceECCCCCEEEEEECCCCCCC-CCCcEEEEEEECCCCcccccEEeCCC-----C-CceEcceEEC
Confidence 654 2 11 11111112225554444443221100 012579999998 56 34444322 1 1112223323
Q ss_pred -CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCC---CCCCCc-eeEEEEE-CCeEEEecccccc
Q 007468 245 -QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM---PPGPRA-GFSMCVH-KKRALLFGGVVDM 318 (602)
Q Consensus 245 -~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~---~P~~R~-~~s~~~~-~~~lyv~GG~~~~ 318 (602)
+++||+.+...+. ..+|++|+.+..|..+..... .|.-.. ..++++. ++++++.+.. +
T Consensus 251 pdg~l~~~~~~~~~--------------~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~- 314 (662)
T 3azo_A 251 PDGSLIVATDRTGW--------------WNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G- 314 (662)
T ss_dssp TTSCEEEEECTTSS--------------CEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S-
T ss_pred CCCeEEEEECCCCC--------------eEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-C-
Confidence 6667776654332 259999998888888754211 011110 1234444 6677666543 2
Q ss_pred ccccccccccccCeeEEEECCCCceEEe
Q 007468 319 EMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (602)
Q Consensus 319 ~~~~~~~~~~~~ndv~~yd~~t~~W~~l 346 (602)
...||.+|+.+.....+
T Consensus 315 -----------~~~l~~~d~~~~~~~~l 331 (662)
T 3azo_A 315 -----------AAVLGILDPESGELVDA 331 (662)
T ss_dssp -----------SCEEEEEETTTTEEEEC
T ss_pred -----------ccEEEEEECCCCcEEEe
Confidence 35688888877665444
No 82
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=95.57 E-value=0.62 Score=50.83 Aligned_cols=149 Identities=15% Similarity=0.139 Sum_probs=74.7
Q ss_pred CeEEEEECCCCcEEE-cccCCC--------CCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEec
Q 007468 156 KDFWMLDLKTNQWEQ-LNLKGC--------PSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (602)
Q Consensus 156 ~dv~~yd~~t~~W~~-~~~~~~--------p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~ 225 (602)
+.+.+||..+.+-.. ++..++ |.+|..+.++.. +..+|+-... .+.|+.+|..+..-..+.
T Consensus 248 ~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~---------~g~i~vvd~~~~~~l~~~ 318 (543)
T 1nir_A 248 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE---------TGKVLLVNYKDIDNLTVT 318 (543)
T ss_dssp SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT---------TTEEEEEECTTSSSCEEE
T ss_pred CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC---------CCeEEEEEecCCCcceeE
Confidence 457788988775432 222111 122322222222 3455554321 367899998764422222
Q ss_pred cCCCCCCCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEE
Q 007468 226 PRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC 303 (602)
Q Consensus 226 ~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~ 303 (602)
.. +..+.-+.++.. +..+|+.+..+. .|.++|+.+.+-...-..+..|.+..+...
T Consensus 319 ~i-----~~~~~~~~~~~spdg~~l~va~~~~~----------------~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~- 376 (543)
T 1nir_A 319 SI-----GAAPFLHDGGWDSSHRYFMTAANNSN----------------KVAVIDSKDRRLSALVDVGKTPHPGRGANF- 376 (543)
T ss_dssp EE-----ECCSSCCCEEECTTSCEEEEEEGGGT----------------EEEEEETTTTEEEEEEECSSSBCCTTCEEE-
T ss_pred Ee-----ccCcCccCceECCCCCEEEEEecCCC----------------eEEEEECCCCeEEEeeccCCCCCCCCCccc-
Confidence 22 112222333443 344555543332 377899988876554444444444333332
Q ss_pred EE--CCeEEEeccccccccccccccccccCeeEEEECCCC-----ceEEeEe
Q 007468 304 VH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH-----RWYPLEL 348 (602)
Q Consensus 304 ~~--~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~-----~W~~l~~ 348 (602)
+. ++.+|+.+...+ +.|-+||+.+. .|+.+..
T Consensus 377 ~~p~~g~~~~s~~~~d-------------~~V~v~d~~~~~~~~~~~~~v~~ 415 (543)
T 1nir_A 377 VHPKYGPVWSTSHLGD-------------GSISLIGTDPKNHPQYAWKKVAE 415 (543)
T ss_dssp EETTTEEEEEEEBSSS-------------SEEEEEECCTTTCTTTBTSEEEE
T ss_pred CCCCCccEEEeccCCC-------------ceEEEEEeCCCCCchhcCeEEEE
Confidence 33 367777664322 45888888772 2766554
No 83
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=95.54 E-value=0.75 Score=47.24 Aligned_cols=200 Identities=12% Similarity=0.093 Sum_probs=98.9
Q ss_pred EEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEE
Q 007468 83 ELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWML 161 (602)
Q Consensus 83 ~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~~y 161 (602)
.+++.|+. -..|.+||+.+.+....-.... ....-.+++.. ++.+++.|+.+ ..+.+|
T Consensus 145 ~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~iw 203 (402)
T 2aq5_A 145 NVLLSAGC---------DNVILVWDVGTGAAVLTLGPDV-HPDTIYSVDWSRDGALICTSCRD-----------KRVRVI 203 (402)
T ss_dssp TEEEEEET---------TSCEEEEETTTTEEEEEECTTT-CCSCEEEEEECTTSSCEEEEETT-----------SEEEEE
T ss_pred CEEEEEcC---------CCEEEEEECCCCCccEEEecCC-CCCceEEEEECCCCCEEEEEecC-----------CcEEEE
Confidence 46666662 2468899999887654321000 11112222222 45666666642 458899
Q ss_pred ECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCce-EEeccCCCCCCCCCcccee
Q 007468 162 DLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW-QEIKPRFGSMWPSPRSGFQ 240 (602)
Q Consensus 162 d~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W-~~v~~~~~~~~P~~R~~~~ 240 (602)
|+.+.+-...-..+....+....+..-++.+++.|.... .-..+.+||+.+..- ...... .....-.+
T Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~------~d~~i~iwd~~~~~~~~~~~~~-----~~~~~v~~ 272 (402)
T 2aq5_A 204 EPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM------SERQVALWDTKHLEEPLSLQEL-----DTSSGVLL 272 (402)
T ss_dssp ETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTT------CCEEEEEEETTBCSSCSEEEEC-----CCCSSCEE
T ss_pred eCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCC------CCceEEEEcCccccCCceEEec-----cCCCceeE
Confidence 998876433221111112122222223667776662111 135788999876432 111111 11111222
Q ss_pred EEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCe--eEEeecCCCCCCCCceeEEEEECCeEEEecccc
Q 007468 241 FFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE--WSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVV 316 (602)
Q Consensus 241 ~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~ 316 (602)
++.. +..||+.|+.++. +.+|++.+.. ...+... .....-.++++..+..+++.+.
T Consensus 273 ~~~s~~~~~l~~~g~~dg~----------------i~i~d~~~~~~~~~~l~~~---~~~~~v~~~~~sp~~~~~~s~~- 332 (402)
T 2aq5_A 273 PFFDPDTNIVYLCGKGDSS----------------IRYFEITSEAPFLHYLSMF---SSKESQRGMGYMPKRGLEVNKC- 332 (402)
T ss_dssp EEEETTTTEEEEEETTCSC----------------EEEEEECSSTTCEEEEEEE---CCSSCCSEEEECCGGGSCGGGT-
T ss_pred EEEcCCCCEEEEEEcCCCe----------------EEEEEecCCCcceEeeccc---ccCCcccceEEecccccceecc-
Confidence 3333 5567777776655 7778876654 4444322 1111223444444444444332
Q ss_pred ccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 317 DMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 317 ~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
..+.+|++.++....+..
T Consensus 333 --------------~~~~~~~l~~~~~~~i~~ 350 (402)
T 2aq5_A 333 --------------EIARFYKLHERKCEPIAM 350 (402)
T ss_dssp --------------EEEEEEEEETTEEEEEEE
T ss_pred --------------eeEEEEEcCCCcEEEEEE
Confidence 247778887877766655
No 84
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=95.49 E-value=0.35 Score=48.51 Aligned_cols=149 Identities=9% Similarity=-0.045 Sum_probs=72.2
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCC
Q 007468 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (602)
Q Consensus 102 dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R 180 (602)
.+|.+|..++++..+.... ....-..+++- +++||+.+.... ...+++|++.+..++.+.........
T Consensus 19 ~v~~~d~~tg~~~~~~~~~--~~~~p~~~a~spdg~l~~~~~~~~---------~~~v~~~~~~~g~~~~~~~~~~~~~~ 87 (347)
T 3hfq_A 19 YQGTLDTTAKTLTNDGLLA--ATQNPTYLALSAKDCLYSVDKEDD---------EGGIAAWQIDGQTAHKLNTVVAPGTP 87 (347)
T ss_dssp EEEEEETTTTEEEEEEEEE--ECSCCCCEEECTTCEEEEEEEETT---------EEEEEEEEEETTEEEEEEEEEEESCC
T ss_pred EEEEEcCCCCeEEEeeeee--ccCCcceEEEccCCeEEEEEecCC---------CceEEEEEecCCcEEEeeeeecCCCC
Confidence 4788888888887643211 11111122222 567777654211 25688999988887666441111111
Q ss_pred cccEEEEE-CC-EEEEEcCccCCCCCeeeeceEEEEECC-CCceEEeccCC-CCCCCCCcc----ceeEEEe-CCEEEEE
Q 007468 181 SGHRMVLY-KH-KIIVFGGFYDTLREVRYYNDLYVFDLD-QFKWQEIKPRF-GSMWPSPRS----GFQFFVY-QDEVFLY 251 (602)
Q Consensus 181 ~~h~~~~~-~~-~Lyv~GG~~~~~~~~~~~~~v~~yd~~-t~~W~~v~~~~-~~~~P~~R~----~~~~~~~-~~~Iyv~ 251 (602)
-..+++. ++ .||+.+.. ...+.+|++. +.....+.... .+..|.+|. -+++++. ++++|+.
T Consensus 88 -p~~~a~spdg~~l~~~~~~---------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~ 157 (347)
T 3hfq_A 88 -PAYVAVDEARQLVYSANYH---------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVI 157 (347)
T ss_dssp -CSEEEEETTTTEEEEEETT---------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEE
T ss_pred -CEEEEECCCCCEEEEEeCC---------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEE
Confidence 1223333 44 56665432 2457777774 33343333221 011121221 2233333 5567776
Q ss_pred cCccCCCCCccCCCCCCceeeeEEEEeCC-CCeeEEe
Q 007468 252 GGYSKEVSTDKNQSEKGIIHSDLWSLDPR-TWEWSKV 287 (602)
Q Consensus 252 GG~~~~~~~~~~~~~~~~~~~dv~~yd~~-t~~W~~l 287 (602)
+.... .+++|++. +.....+
T Consensus 158 ~~~~~----------------~v~~~~~~~~g~~~~~ 178 (347)
T 3hfq_A 158 DLGSD----------------KVYVYNVSDAGQLSEQ 178 (347)
T ss_dssp ETTTT----------------EEEEEEECTTSCEEEE
T ss_pred eCCCC----------------EEEEEEECCCCcEEEe
Confidence 54332 37778876 5555544
No 85
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=95.47 E-value=0.37 Score=55.06 Aligned_cols=179 Identities=13% Similarity=0.169 Sum_probs=98.9
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCC--ceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccC-C
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPP--RSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK-G 175 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~--R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~-~ 175 (602)
+-+++||+.+++|..+.....|.. .....+... ++.|||... ..+++||+.+..+ .+... .
T Consensus 471 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-------------~Gl~~~~~~~~~~-~~~~~~~ 536 (795)
T 4a2l_A 471 SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-------------EGLSVFKQEGLDI-QKASILP 536 (795)
T ss_dssp SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-------------SCEEEEEEETTEE-EECCCSC
T ss_pred CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-------------CceEEEeCCCCeE-EEecCCC
Confidence 458999999999987753211111 111112222 466777532 2478899988888 44321 0
Q ss_pred CCCCCcccEEEE-E--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEE
Q 007468 176 CPSPRSGHRMVL-Y--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLY 251 (602)
Q Consensus 176 ~p~~R~~h~~~~-~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~ 251 (602)
.+........++ . ++.|++-.. ..+++||+.+.++....... .+|... -++++.. ++.||+.
T Consensus 537 ~~~l~~~~i~~i~~d~~g~lWigT~-----------~Gl~~~d~~~~~~~~~~~~~--gl~~~~-i~~i~~d~~g~lWi~ 602 (795)
T 4a2l_A 537 VSNVTKLFTNCIYEASNGIIWVGTR-----------EGFYCFNEKDKQIKRYNTTN--GLPNNV-VYGILEDSFGRLWLS 602 (795)
T ss_dssp SCGGGGSCEEEEEECTTSCEEEEES-----------SCEEEEETTTTEEEEECGGG--TCSCSC-EEEEEECTTSCEEEE
T ss_pred CCCCCCCeeEEEEECCCCCEEEEeC-----------CCceeECCCCCcEEEeCCCC--CCchhh-eEEEEECCCCCEEEE
Confidence 111111122222 2 567776321 25889999999888775431 123322 2333333 6788886
Q ss_pred cCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCce-eEEEEECCeEEEecccccccccccccccccc
Q 007468 252 GGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG-FSMCVHKKRALLFGGVVDMEMKGDVIMSLFL 330 (602)
Q Consensus 252 GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~-~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ 330 (602)
+. . -+.+|++.+.++.......-+|...+. .+++...+--+.|||..+
T Consensus 603 t~--~----------------Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~G------------- 651 (795)
T 4a2l_A 603 TN--R----------------GISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGGING------------- 651 (795)
T ss_dssp ET--T----------------EEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSCEEEEETTE-------------
T ss_pred cC--C----------------ceEEEcCCCCcEEEcCCcCCCccccCccCceeECCCCeEEEecCCc-------------
Confidence 63 2 278999999998877543223444433 334444444455676544
Q ss_pred CeeEEEECCC
Q 007468 331 NELYGFQLDN 340 (602)
Q Consensus 331 ndv~~yd~~t 340 (602)
+.+|+|..
T Consensus 652 --l~~~~p~~ 659 (795)
T 4a2l_A 652 --ITTFRPEL 659 (795)
T ss_dssp --EEEECGGG
T ss_pred --eEEEcHHH
Confidence 67777754
No 86
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=95.46 E-value=1.1 Score=44.74 Aligned_cols=163 Identities=9% Similarity=0.004 Sum_probs=81.4
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~ 179 (602)
..+.+|+..+..-...-.. ....-.+++.. ++.+++.|+.. ..+.+||+.+.+-...-. ...
T Consensus 144 g~v~i~~~~~~~~~~~~~~---~~~~v~~~~~spdg~~lasg~~d-----------g~i~iwd~~~~~~~~~~~--~h~- 206 (321)
T 3ow8_A 144 GKVNIFGVESGKKEYSLDT---RGKFILSIAYSPDGKYLASGAID-----------GIINIFDIATGKLLHTLE--GHA- 206 (321)
T ss_dssp SEEEEEETTTCSEEEEEEC---SSSCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CCS-
T ss_pred CcEEEEEcCCCceeEEecC---CCceEEEEEECCCCCEEEEEcCC-----------CeEEEEECCCCcEEEEEc--ccC-
Confidence 3577788776654322111 11111222222 45666777643 347889998876432211 111
Q ss_pred CcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCccC
Q 007468 180 RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSK 256 (602)
Q Consensus 180 R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~ 256 (602)
..-.++.+ ++.+++.|+.+ ..+.+||+.+......-.. ....-.+++.. ++.+++.|+.++
T Consensus 207 -~~v~~l~~spd~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~------h~~~v~~~~~sp~~~~l~s~s~D~ 270 (321)
T 3ow8_A 207 -MPIRSLTFSPDSQLLVTASDD---------GYIKIYDVQHANLAGTLSG------HASWVLNVAFCPDDTHFVSSSSDK 270 (321)
T ss_dssp -SCCCEEEECTTSCEEEEECTT---------SCEEEEETTTCCEEEEECC------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred -CceeEEEEcCCCCEEEEEcCC---------CeEEEEECCCcceeEEEcC------CCCceEEEEECCCCCEEEEEeCCC
Confidence 11122333 56777777754 3588889877654322111 11111222222 667778888776
Q ss_pred CCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEecccc
Q 007468 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVV 316 (602)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~GG~~ 316 (602)
. +.+||+.+.+-...-. + ....-.++++. ++..++.||.+
T Consensus 271 ~----------------v~iwd~~~~~~~~~~~-~---h~~~v~~v~~s~~g~~l~s~~~d 311 (321)
T 3ow8_A 271 S----------------VKVWDVGTRTCVHTFF-D---HQDQVWGVKYNGNGSKIVSVGDD 311 (321)
T ss_dssp C----------------EEEEETTTTEEEEEEC-C---CSSCEEEEEECTTSSEEEEEETT
T ss_pred c----------------EEEEeCCCCEEEEEEc-C---CCCcEEEEEECCCCCEEEEEeCC
Confidence 5 7888887654332211 1 11122333443 56677777754
No 87
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=95.46 E-value=1.2 Score=47.56 Aligned_cols=59 Identities=19% Similarity=0.400 Sum_probs=40.5
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~ 160 (602)
++++|+|-| +..|+||..+++.....-+.+| . --++....+.+|+|-| +..|+
T Consensus 158 ~~~~yfFkG-----------~~yw~yd~~~~~~~~~~w~gi~--~-iDAA~~~~g~~YfFkG-------------~~y~r 210 (460)
T 1qhu_A 158 DEGILFFQG-----------NRKWFWDLTTGTKKERSWPAVG--N-CTSALRWLGRYYCFQG-------------NQFLR 210 (460)
T ss_dssp SSEEEEEET-----------TEEEEEETTTTEEEEECCTTSC--C-CSEEEEETTEEEEEET-------------TEEEE
T ss_pred CCeEEEEec-----------ccEEEEecccceeecccCCCCC--c-cchheeeCCceEEEEC-------------CEEEE
Confidence 477888888 3679999998876644333333 3 3455556799999988 35678
Q ss_pred EECCCC
Q 007468 161 LDLKTN 166 (602)
Q Consensus 161 yd~~t~ 166 (602)
||..+.
T Consensus 211 fd~~~~ 216 (460)
T 1qhu_A 211 FNPVSG 216 (460)
T ss_dssp ECTTTC
T ss_pred EcCccC
Confidence 887654
No 88
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=95.43 E-value=1 Score=42.99 Aligned_cols=191 Identities=7% Similarity=0.007 Sum_probs=99.8
Q ss_pred eEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCC
Q 007468 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (602)
Q Consensus 72 ~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~ 150 (602)
+.+++.+ ++.|||... .+.|++||+.......+.... ...-+.+++. ++.|||....
T Consensus 70 ~~i~~~~--~g~l~v~~~----------~~~i~~~d~~~~~~~~~~~~~---~~~p~~i~~~~~g~l~v~~~~------- 127 (270)
T 1rwi_B 70 QGLAVDG--AGTVYVTDF----------NNRVVTLAAGSNNQTVLPFDG---LNYPEGLAVDTQGAVYVADRG------- 127 (270)
T ss_dssp CCEEECT--TCCEEEEET----------TTEEEEECTTCSCCEECCCCS---CSSEEEEEECTTCCEEEEEGG-------
T ss_pred ceeEECC--CCCEEEEcC----------CCEEEEEeCCCceEeeeecCC---cCCCcceEECCCCCEEEEECC-------
Confidence 3444444 456776543 136888998877655443211 1222334443 5678887542
Q ss_pred cceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCC
Q 007468 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (602)
Q Consensus 151 ~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~ 229 (602)
...+++|+..+.........+. ..-+++++. +++||+.... .+.|++||+.+..-......
T Consensus 128 ----~~~i~~~~~~~~~~~~~~~~~~---~~p~~i~~~~~g~l~v~~~~---------~~~i~~~~~~~~~~~~~~~~-- 189 (270)
T 1rwi_B 128 ----NNRVVKLAAGSKTQTVLPFTGL---NDPDGVAVDNSGNVYVTDTD---------NNRVVKLEAESNNQVVLPFT-- 189 (270)
T ss_dssp ----GTEEEEECTTCCSCEECCCCSC---CSCCCEEECTTCCEEEEEGG---------GTEEEEECTTTCCEEECCCS--
T ss_pred ----CCEEEEEECCCceeEeeccccC---CCceeEEEeCCCCEEEEECC---------CCEEEEEecCCCceEeeccc--
Confidence 2457888776665443322111 112234443 5678886542 25789999887654332211
Q ss_pred CCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CC
Q 007468 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KK 307 (602)
Q Consensus 230 ~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~ 307 (602)
.. ..-.++++. ++.|||....... +++|++.+..-...... ....-.++++. ++
T Consensus 190 ---~~-~~p~~i~~d~~g~l~v~~~~~~~----------------v~~~~~~~~~~~~~~~~----~~~~p~~i~~~~~g 245 (270)
T 1rwi_B 190 ---DI-TAPWGIAVDEAGTVYVTEHNTNQ----------------VVKLLAGSTTSTVLPFT----GLNTPLAVAVDSDR 245 (270)
T ss_dssp ---SC-CSEEEEEECTTCCEEEEETTTSC----------------EEEECTTCSCCEECCCC----SCSCEEEEEECTTC
T ss_pred ---CC-CCceEEEECCCCCEEEEECCCCc----------------EEEEcCCCCcceeeccC----CCCCceeEEECCCC
Confidence 11 112234443 5688887654433 88899876543332211 11222344443 46
Q ss_pred eEEEeccccccccccccccccccCeeEEEECCC
Q 007468 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (602)
Q Consensus 308 ~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t 340 (602)
+||+....+ +.|.+|++..
T Consensus 246 ~l~v~~~~~--------------~~v~~~~~~~ 264 (270)
T 1rwi_B 246 TVYVADRGN--------------DRVVKLTSLE 264 (270)
T ss_dssp CEEEEEGGG--------------TEEEEECCCG
T ss_pred CEEEEECCC--------------CEEEEEcCCC
Confidence 788765432 4577777654
No 89
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=95.43 E-value=1.8 Score=44.29 Aligned_cols=104 Identities=12% Similarity=-0.054 Sum_probs=56.4
Q ss_pred CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe-CCE-EEEEcCccCCCCCccCCCC
Q 007468 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDE-VFLYGGYSKEVSTDKNQSE 266 (602)
Q Consensus 189 ~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~-Iyv~GG~~~~~~~~~~~~~ 266 (602)
++.+++.|+.+ ..+.+||+.+..-...... .....-.+++.. ++. +++.|+.++.
T Consensus 258 ~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~g~~dg~--------- 314 (420)
T 3vl1_A 258 YGKYVIAGHVS---------GVITVHNVFSKEQTIQLPS-----KFTCSCNSLTVDGNNANYIYAGYENGM--------- 314 (420)
T ss_dssp TTEEEEEEETT---------SCEEEEETTTCCEEEEECC-----TTSSCEEEEEECSSCTTEEEEEETTSE---------
T ss_pred CCCEEEEEcCC---------CeEEEEECCCCceeEEccc-----ccCCCceeEEEeCCCCCEEEEEeCCCe---------
Confidence 45666776653 3588899887653222221 111112223333 444 7777777655
Q ss_pred CCceeeeEEEEeCCCCe--eEEeecCCCCCCCCceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCC
Q 007468 267 KGIIHSDLWSLDPRTWE--WSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (602)
Q Consensus 267 ~~~~~~dv~~yd~~t~~--W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t 340 (602)
+.+||+.+.. -..+... ....-.+++...+.+++.|+.++ .|.+|++..
T Consensus 315 -------i~vwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~s~~~d~--------------~v~iw~~~~ 365 (420)
T 3vl1_A 315 -------LAQWDLRSPECPVGEFLIN----EGTPINNVYFAAGALFVSSGFDT--------------SIKLDIISD 365 (420)
T ss_dssp -------EEEEETTCTTSCSEEEEES----TTSCEEEEEEETTEEEEEETTTE--------------EEEEEEECC
T ss_pred -------EEEEEcCCCcCchhhhhcc----CCCCceEEEeCCCCEEEEecCCc--------------cEEEEeccC
Confidence 8888887643 2233221 11122334445788888887643 477777655
No 90
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=95.42 E-value=2.1 Score=43.81 Aligned_cols=181 Identities=8% Similarity=-0.021 Sum_probs=96.7
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~ 179 (602)
+.|++||..++....+.... ....-.+++.. ++.++++|+.. ..+.+||+.+.+....-. ..
T Consensus 113 ~~v~lw~~~~~~~~~~~~~~--~~~~v~~v~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~----~~ 175 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAETD--ESTYVASVKWSHDGSFLSVGLGN-----------GLVDIYDVESQTKLRTMA----GH 175 (401)
T ss_dssp TEEEEEETTTCCEEEEEECC--TTCCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTCCEEEEEC----CC
T ss_pred CeEEEeeCCCCcEeEeeecC--CCCCEEEEEECCCCCEEEEECCC-----------CeEEEEECcCCeEEEEec----CC
Confidence 47899999998877554321 11222222222 45566666643 357889988776433221 12
Q ss_pred CcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCccCCC
Q 007468 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEV 258 (602)
Q Consensus 180 R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~ 258 (602)
.....++.+++.+++.|+.+ ..+.+||+.+..-...... .....-.+++.. ++.+++.|+.++.
T Consensus 176 ~~~v~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~- 240 (401)
T 4aez_A 176 QARVGCLSWNRHVLSSGSRS---------GAIHHHDVRIANHQIGTLQ-----GHSSEVCGLAWRSDGLQLASGGNDNV- 240 (401)
T ss_dssp SSCEEEEEEETTEEEEEETT---------SEEEEEETTSSSCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSC-
T ss_pred CCceEEEEECCCEEEEEcCC---------CCEEEEecccCcceeeEEc-----CCCCCeeEEEEcCCCCEEEEEeCCCe-
Confidence 22233445566777777753 4688888874332211111 111111222333 6777888887665
Q ss_pred CCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE--CCeEEEeccccccccccccccccccCeeEEE
Q 007468 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGF 336 (602)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~y 336 (602)
+.+||+.+..-...-. .....-.++++. +..+++.||-.. -..|.+|
T Consensus 241 ---------------v~iwd~~~~~~~~~~~----~~~~~v~~~~~~p~~~~ll~~~~gs~------------d~~i~i~ 289 (401)
T 4aez_A 241 ---------------VQIWDARSSIPKFTKT----NHNAAVKAVAWCPWQSNLLATGGGTM------------DKQIHFW 289 (401)
T ss_dssp ---------------EEEEETTCSSEEEEEC----CCSSCCCEEEECTTSTTEEEEECCTT------------TCEEEEE
T ss_pred ---------------EEEccCCCCCccEEec----CCcceEEEEEECCCCCCEEEEecCCC------------CCEEEEE
Confidence 8888987654322211 111122344444 456777764211 2458999
Q ss_pred ECCCCceE
Q 007468 337 QLDNHRWY 344 (602)
Q Consensus 337 d~~t~~W~ 344 (602)
|+.+..-.
T Consensus 290 d~~~~~~~ 297 (401)
T 4aez_A 290 NAATGARV 297 (401)
T ss_dssp ETTTCCEE
T ss_pred ECCCCCEE
Confidence 98876543
No 91
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=95.41 E-value=1 Score=50.19 Aligned_cols=194 Identities=8% Similarity=0.015 Sum_probs=100.8
Q ss_pred eCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCC-cEEEcccCCC
Q 007468 100 YGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN-QWEQLNLKGC 176 (602)
Q Consensus 100 ~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~-~W~~~~~~~~ 176 (602)
...|++||+.+.....+.... ........+.+ ++..++++...... ....++++|+.+. .+..+.....
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~------~~~~v~~~d~~~g~~~~~~~~~~~ 305 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTGE--PKEKFLTNLSWSPDENILYVAEVNRAQ------NECKVNAYDAETGRFVRTLFVETD 305 (706)
T ss_dssp EEEEEEEETTTTEEEECCCCS--CTTCEEEEEEECTTSSEEEEEEECTTS------CEEEEEEEETTTCCEEEEEEEEEC
T ss_pred eeEEEEEECCCCceEeeccCC--CCceeEeeEEEECCCCEEEEEEeCCCC------CeeEEEEEECCCCceeeEEEEccC
Confidence 357999999988876664321 11122223333 44433343332211 2357999999998 7766543111
Q ss_pred CCCC--cccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEE
Q 007468 177 PSPR--SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFL 250 (602)
Q Consensus 177 p~~R--~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv 250 (602)
.... ....+..- ++++++.+..++ ...+|.++........+... ....... .+.. +..||+
T Consensus 306 ~~~~~~~~~~~~sp~~dg~~l~~~~~~g-------~~~l~~~~~~~~~~~~l~~~-----~~~v~~~-~~~spdg~~l~~ 372 (706)
T 2z3z_A 306 KHYVEPLHPLTFLPGSNNQFIWQSRRDG-------WNHLYLYDTTGRLIRQVTKG-----EWEVTNF-AGFDPKGTRLYF 372 (706)
T ss_dssp SSCCCCCSCCEECTTCSSEEEEEECTTS-------SCEEEEEETTSCEEEECCCS-----SSCEEEE-EEECTTSSEEEE
T ss_pred CCeECccCCceeecCCCCEEEEEEccCC-------ccEEEEEECCCCEEEecCCC-----CeEEEee-eEEcCCCCEEEE
Confidence 1100 11112222 667665554432 35788898776666665332 1222111 1222 456666
Q ss_pred EcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEeccccccccccccccccc
Q 007468 251 YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLF 329 (602)
Q Consensus 251 ~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~ 329 (602)
.+.... .....+|.+|+.+.....+.. ....+++++. +++.+++..... ..
T Consensus 373 ~~~~~~------------~~~~~l~~~d~~~~~~~~l~~------~~~~~~~~~spdg~~l~~~~~~~----------~~ 424 (706)
T 2z3z_A 373 ESTEAS------------PLERHFYCIDIKGGKTKDLTP------ESGMHRTQLSPDGSAIIDIFQSP----------TV 424 (706)
T ss_dssp EESSSC------------TTCBEEEEEETTCCCCEESCC------SSSEEEEEECTTSSEEEEEEECS----------SC
T ss_pred EecCCC------------CceEEEEEEEcCCCCceeccC------CCceEEEEECCCCCEEEEEecCC----------CC
Confidence 655432 123458999988877666542 1123344443 566666654322 12
Q ss_pred cCeeEEEECCCCc
Q 007468 330 LNELYGFQLDNHR 342 (602)
Q Consensus 330 ~ndv~~yd~~t~~ 342 (602)
...|+++|+.+.+
T Consensus 425 p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 425 PRKVTVTNIGKGS 437 (706)
T ss_dssp SCEEEEEESSSCE
T ss_pred CcEEEEEECCCCe
Confidence 4568999988876
No 92
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=95.40 E-value=2.2 Score=44.44 Aligned_cols=174 Identities=11% Similarity=0.069 Sum_probs=90.6
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~ 159 (602)
++.+++.|+. -..+.+||+.+.+-...-... .. .-.+++.. ++..++.|+.+ ..+.
T Consensus 279 ~~~~l~~~~~---------d~~i~vwd~~~~~~~~~~~~~--~~-~v~~~~~~~~~~~l~sg~~d-----------g~i~ 335 (464)
T 3v7d_B 279 HGNIVVSGSY---------DNTLIVWDVAQMKCLYILSGH--TD-RIYSTIYDHERKRCISASMD-----------TTIR 335 (464)
T ss_dssp ETTEEEEEET---------TSCEEEEETTTTEEEEEECCC--SS-CEEEEEEETTTTEEEEEETT-----------SCEE
T ss_pred CCCEEEEEeC---------CCeEEEEECCCCcEEEEecCC--CC-CEEEEEEcCCCCEEEEEeCC-----------CcEE
Confidence 3556666662 246889999877654332211 11 12222232 45566666643 3588
Q ss_pred EEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccce
Q 007468 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGF 239 (602)
Q Consensus 160 ~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~ 239 (602)
+||+.+.+-...- ......-.++.+.+..++.|+.+ ..+.+||+.+..-...... ......
T Consensus 336 vwd~~~~~~~~~~----~~h~~~v~~~~~~~~~l~s~s~d---------g~v~vwd~~~~~~~~~~~~------~~~~~~ 396 (464)
T 3v7d_B 336 IWDLENGELMYTL----QGHTALVGLLRLSDKFLVSAAAD---------GSIRGWDANDYSRKFSYHH------TNLSAI 396 (464)
T ss_dssp EEETTTTEEEEEE----CCCSSCEEEEEECSSEEEEEETT---------SEEEEEETTTCCEEEEEEC------TTCCCE
T ss_pred EEECCCCcEEEEE----eCCCCcEEEEEEcCCEEEEEeCC---------CcEEEEECCCCceeeeecC------CCCccE
Confidence 8999877533221 11222234455566777777753 3688899887653222221 112222
Q ss_pred eEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEecccc
Q 007468 240 QFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVV 316 (602)
Q Consensus 240 ~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~ 316 (602)
.+...++.+++.|+ ++. +.+||+.+.+-...... +....-.++++.++.+++.++..
T Consensus 397 ~~~~~~~~~l~~~~-dg~----------------i~iwd~~~g~~~~~~~~---~~~~~v~~v~~~~~~l~~~~~~~ 453 (464)
T 3v7d_B 397 TTFYVSDNILVSGS-ENQ----------------FNIYNLRSGKLVHANIL---KDADQIWSVNFKGKTLVAAVEKD 453 (464)
T ss_dssp EEEEECSSEEEEEE-TTE----------------EEEEETTTCCEEESCTT---TTCSEEEEEEEETTEEEEEEEET
T ss_pred EEEEeCCCEEEEec-CCe----------------EEEEECCCCcEEehhhc---cCCCcEEEEEecCCEEEEEEEeC
Confidence 23334666666666 433 88899888765432121 22222334444566666655543
No 93
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=95.34 E-value=1.9 Score=42.51 Aligned_cols=68 Identities=18% Similarity=0.166 Sum_probs=41.0
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv 158 (602)
++.+|+.++. .+.|+++|+.+++....-.. +.....+.+++. +..+|+.+.. ...+
T Consensus 10 ~~~~~v~~~~---------~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~~~v~~~~-----------~~~i 67 (349)
T 1jmx_B 10 GHEYMIVTNY---------PNNLHVVDVASDTVYKSCVM--PDKFGPGTAMMAPDNRTAYVLNNH-----------YGDI 67 (349)
T ss_dssp TCEEEEEEET---------TTEEEEEETTTTEEEEEEEC--SSCCSSCEEEECTTSSEEEEEETT-----------TTEE
T ss_pred CCEEEEEeCC---------CCeEEEEECCCCcEEEEEec--CCCCCCceeEECCCCCEEEEEeCC-----------CCcE
Confidence 5778887762 35789999998876533221 110012333333 3467877642 2468
Q ss_pred EEEECCCCcEEE
Q 007468 159 WMLDLKTNQWEQ 170 (602)
Q Consensus 159 ~~yd~~t~~W~~ 170 (602)
++||+.+.+...
T Consensus 68 ~~~d~~t~~~~~ 79 (349)
T 1jmx_B 68 YGIDLDTCKNTF 79 (349)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEeCCCCcEEE
Confidence 999999887543
No 94
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=95.33 E-value=0.99 Score=46.82 Aligned_cols=150 Identities=9% Similarity=-0.012 Sum_probs=77.2
Q ss_pred EEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCc
Q 007468 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQER 151 (602)
Q Consensus 74 ~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~ 151 (602)
+.+.| ++.+++.|+. -..|.+||..+......-.+. . . .-.++.+ ++.+++.|+.+.
T Consensus 114 ~~~~p--~~~~l~s~s~---------Dg~i~vwd~~~~~~~~~l~~h--~-~-~V~~v~~~~~~~~l~sgs~D~------ 172 (410)
T 1vyh_C 114 VIFHP--VFSVMVSASE---------DATIKVWDYETGDFERTLKGH--T-D-SVQDISFDHSGKLLASCSADM------ 172 (410)
T ss_dssp EEECS--SSSEEEEEES---------SSCEEEEETTTCCCCEEECCC--S-S-CEEEEEECTTSSEEEEEETTS------
T ss_pred EEEcC--CCCEEEEEeC---------CCeEEEEECCCCcEEEEEecc--C-C-cEEEEEEcCCCCEEEEEeCCC------
Confidence 34454 4677777773 247889998877544322211 1 1 1122233 466777777543
Q ss_pred ceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCC
Q 007468 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (602)
Q Consensus 152 ~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~ 229 (602)
.+.+||+.+..-... +......-.++.+ ++..++.|+.+ ..+.+||+.+..-...-..
T Consensus 173 -----~i~iwd~~~~~~~~~----~~~h~~~V~~v~~~p~~~~l~s~s~D---------~~i~~wd~~~~~~~~~~~~-- 232 (410)
T 1vyh_C 173 -----TIKLWDFQGFECIRT----MHGHDHNVSSVSIMPNGDHIVSASRD---------KTIKMWEVQTGYCVKTFTG-- 232 (410)
T ss_dssp -----CCCEEETTSSCEEEC----CCCCSSCEEEEEECSSSSEEEEEETT---------SEEEEEETTTCCEEEEEEC--
T ss_pred -----eEEEEeCCCCceeEE----EcCCCCCEEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCcEEEEEeC--
Confidence 356778766543221 1111111222333 45666777753 4688899887653222111
Q ss_pred CCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCee
Q 007468 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284 (602)
Q Consensus 230 ~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W 284 (602)
....-..+... ++.+++.|+.++. +.+||+.+...
T Consensus 233 ----h~~~v~~~~~~~~g~~l~s~s~D~~----------------v~vwd~~~~~~ 268 (410)
T 1vyh_C 233 ----HREWVRMVRPNQDGTLIASCSNDQT----------------VRVWVVATKEC 268 (410)
T ss_dssp ----CSSCEEEEEECTTSSEEEEEETTSC----------------EEEEETTTCCE
T ss_pred ----CCccEEEEEECCCCCEEEEEcCCCe----------------EEEEECCCCce
Confidence 11111112222 6677788887665 66777766543
No 95
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=95.31 E-value=1.9 Score=44.02 Aligned_cols=104 Identities=8% Similarity=0.047 Sum_probs=54.9
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~ 159 (602)
++.++++|+. -..+.+||+.+..-...-.. ....-.+++.. ++.+++.|+.+ ..+.
T Consensus 108 ~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~d-----------~~i~ 164 (420)
T 3vl1_A 108 QMRRFILGTT---------EGDIKVLDSNFNLQREIDQA---HVSEITKLKFFPSGEALISSSQD-----------MQLK 164 (420)
T ss_dssp SSCEEEEEET---------TSCEEEECTTSCEEEEETTS---SSSCEEEEEECTTSSEEEEEETT-----------SEEE
T ss_pred CCCEEEEEEC---------CCCEEEEeCCCcceeeeccc---ccCccEEEEECCCCCEEEEEeCC-----------CeEE
Confidence 5677777762 24688899887765544221 11222223332 45566666642 3588
Q ss_pred EEECCCCcEE-EcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCCc
Q 007468 160 MLDLKTNQWE-QLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (602)
Q Consensus 160 ~yd~~t~~W~-~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~ 220 (602)
+||+.+.+-. .+.. . ...-.+++.. ++.+++.|+.+ ..+.+||+.+..
T Consensus 165 iwd~~~~~~~~~~~~---h-~~~v~~~~~~~~~~~l~s~~~d---------~~v~iwd~~~~~ 214 (420)
T 3vl1_A 165 IWSVKDGSNPRTLIG---H-RATVTDIAIIDRGRNVLSASLD---------GTIRLWECGTGT 214 (420)
T ss_dssp EEETTTCCCCEEEEC---C-SSCEEEEEEETTTTEEEEEETT---------SCEEEEETTTTE
T ss_pred EEeCCCCcCceEEcC---C-CCcEEEEEEcCCCCEEEEEcCC---------CcEEEeECCCCc
Confidence 8898765421 1110 1 1111122222 55666677653 357888887764
No 96
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=95.28 E-value=2.7 Score=41.99 Aligned_cols=135 Identities=12% Similarity=0.008 Sum_probs=71.2
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCC
Q 007468 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP 233 (602)
Q Consensus 156 ~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P 233 (602)
..+.+||+.+..-...-. .... .-.++.+ ++.+++.|+.+ ..+..||+.+..-...-..
T Consensus 164 ~~i~~wd~~~~~~~~~~~--~h~~--~v~~~~~~~~~~~l~sg~~d---------~~v~~wd~~~~~~~~~~~~------ 224 (340)
T 1got_B 164 TTCALWDIETGQQTTTFT--GHTG--DVMSLSLAPDTRLFVSGACD---------ASAKLWDVREGMCRQTFTG------ 224 (340)
T ss_dssp SCEEEEETTTTEEEEEEC--CCSS--CEEEEEECTTSSEEEEEETT---------SCEEEEETTTCSEEEEECC------
T ss_pred CcEEEEECCCCcEEEEEc--CCCC--ceEEEEECCCCCEEEEEeCC---------CcEEEEECCCCeeEEEEcC------
Confidence 357788988876433211 1111 1122223 56777777764 3578889877643222111
Q ss_pred CCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCce-eEEEEE-CCeEE
Q 007468 234 SPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG-FSMCVH-KKRAL 310 (602)
Q Consensus 234 ~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~-~s~~~~-~~~ly 310 (602)
....-.+++.. ++.+++.|+.++. +.+||+.+..-...-.. +..... .++++. +++++
T Consensus 225 h~~~v~~v~~~p~~~~l~s~s~d~~----------------v~iwd~~~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l 285 (340)
T 1got_B 225 HESDINAICFFPNGNAFATGSDDAT----------------CRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLL 285 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSC----------------EEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSEE
T ss_pred CcCCEEEEEEcCCCCEEEEEcCCCc----------------EEEEECCCCcEEEEEcc---CCcccceEEEEECCCCCEE
Confidence 11111222333 6777888887766 77888876643222111 111112 233333 56777
Q ss_pred EeccccccccccccccccccCeeEEEECCCCc
Q 007468 311 LFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 311 v~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
+.|+.+ ..|.+||+.+..
T Consensus 286 ~~g~~d--------------~~i~vwd~~~~~ 303 (340)
T 1got_B 286 LAGYDD--------------FNCNVWDALKAD 303 (340)
T ss_dssp EEEETT--------------SEEEEEETTTCC
T ss_pred EEECCC--------------CeEEEEEcccCc
Confidence 777653 358899986643
No 97
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=95.28 E-value=0.66 Score=51.26 Aligned_cols=225 Identities=13% Similarity=-0.010 Sum_probs=117.2
Q ss_pred EEEEecCCCCEEEEEcceecCC-CCceeeCcEEEEEcCC------CcEEEec-CCCCCCCceeeEEEE-ECCEEEEEeCc
Q 007468 73 SLNINPLKETELILYGGEFYNG-NKTYVYGDLYRYDVEK------QEWKVIS-SPNSPPPRSAHQAVS-WKNYLYIFGGE 143 (602)
Q Consensus 73 s~~~~~~~~~~iyv~GG~~~~g-~~~~~~~dv~~yd~~~------~~W~~l~-~~~~P~~R~~hs~~~-~~~~iyV~GG~ 143 (602)
..++.| +++.+++....... ........||++|+.+ .....+. ... ......+. -+++.+++...
T Consensus 134 ~~~~sp--Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~SpDG~~la~~~~ 207 (662)
T 3azo_A 134 DPVLLP--ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAH----RFVTGPRLSPDGRQAVWLAW 207 (662)
T ss_dssp EEEEET--TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCS----SEECCCEECTTSSEEEEEEE
T ss_pred CcEECC--CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCC----CcccCceECCCCCEEEEEEC
Confidence 344555 56555555532100 0012346899999988 6777665 321 11122222 24443334332
Q ss_pred cCCCCCCcceecCeEEEEECC-CC---cEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECC
Q 007468 144 FTSPNQERFHHYKDFWMLDLK-TN---QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (602)
Q Consensus 144 ~~~~~~~~~~~~~dv~~yd~~-t~---~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~ 217 (602)
...... .....+|++|+. +. ....+... . ........+ +++||+.+...+ ...+|.+|+.
T Consensus 208 ~~~~~~---~~~~~i~~~d~~~~g~~~~~~~l~~~--~--~~~~~~~~~spdg~l~~~~~~~~-------~~~l~~~~~~ 273 (662)
T 3azo_A 208 DHPRMP---WEGTELKTARVTEDGRFADTRTLLGG--P--EEAIAQAEWAPDGSLIVATDRTG-------WWNLHRVDPA 273 (662)
T ss_dssp CTTCCT---TTCEEEEEEEECTTSCEEEEEEEEEE--T--TBCEEEEEECTTSCEEEEECTTS-------SCEEEEECTT
T ss_pred CCCCCC---CCCcEEEEEEECCCCcccccEEeCCC--C--CceEcceEECCCCeEEEEECCCC-------CeEEEEEECC
Confidence 221110 012579999998 56 44444321 1 112222333 567776665432 2479999998
Q ss_pred CCceEEeccCCCCC-CCCCcc-ceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCC
Q 007468 218 QFKWQEIKPRFGSM-WPSPRS-GFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP 294 (602)
Q Consensus 218 t~~W~~v~~~~~~~-~P~~R~-~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 294 (602)
+..+..+....... .|.-.. ...++.. ++++++.+.. +. ..+|.+|+.+.....+.. +
T Consensus 274 ~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~--------------~~l~~~d~~~~~~~~l~~----~ 334 (662)
T 3azo_A 274 TGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA--------------AVLGILDPESGELVDAAG----P 334 (662)
T ss_dssp TCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS--------------CEEEEEETTTTEEEECCS----S
T ss_pred CCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc--------------cEEEEEECCCCcEEEecC----C
Confidence 88888876542110 011110 1223333 6677766654 33 358899988887766643 1
Q ss_pred CCCceeEE-EEECCeEEEeccccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 295 GPRAGFSM-CVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 295 ~~R~~~s~-~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
.....++ ..-++.+++..+... ....||.+|+.+.....+..
T Consensus 335 -~~~~~~~~s~~~~~~~~~~~~~~-----------~~~~i~~~d~~~g~~~~l~~ 377 (662)
T 3azo_A 335 -WTEWAATLTVSGTRAVGVAASPR-----------TAYEVVELDTVTGRARTIGA 377 (662)
T ss_dssp -CCEEEEEEEEETTEEEEEEEETT-----------EEEEEEEEETTTCCEEEEES
T ss_pred -CCeEEEEEecCCCEEEEEEcCCC-----------CCCEEEEEECCCCceEEeec
Confidence 1122233 445666666554322 24579999999988877753
No 98
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=95.26 E-value=1.3 Score=44.92 Aligned_cols=179 Identities=11% Similarity=0.016 Sum_probs=87.6
Q ss_pred EEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE---CCEEEEEeCccCCCCCC
Q 007468 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQE 150 (602)
Q Consensus 74 ~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~---~~~iyV~GG~~~~~~~~ 150 (602)
+.+.| ++++++.|+. -..|.+||+.+++-...-... .. .-.++.+ +..+++.|+.+
T Consensus 133 v~~sp--dg~~l~sgs~---------d~~i~iwd~~~~~~~~~~~~h--~~--~V~~~~~~~~~~~~l~s~s~D------ 191 (344)
T 4gqb_B 133 VSVLS--SGTQAVSGSK---------DICIKVWDLAQQVVLSSYRAH--AA--QVTCVAASPHKDSVFLSCSED------ 191 (344)
T ss_dssp EEECT--TSSEEEEEET---------TSCEEEEETTTTEEEEEECCC--SS--CEEEEEECSSCTTEEEEEETT------
T ss_pred EEECC--CCCEEEEEeC---------CCeEEEEECCCCcEEEEEcCc--CC--ceEEEEecCCCCCceeeeccc------
Confidence 33444 5666666662 236788898877544322211 11 1122222 33577777653
Q ss_pred cceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE---CCEEEEEcCccCCCCCeeeeceEEEEECCCCceE-Eecc
Q 007468 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-EIKP 226 (602)
Q Consensus 151 ~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~---~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~-~v~~ 226 (602)
..+.+||+.+.+-...-. .........++.+ ++++++.|+.+ ..|.+||+.+.+-. .+..
T Consensus 192 -----~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~l~sg~~d---------g~v~~wd~~~~~~~~~~~~ 255 (344)
T 4gqb_B 192 -----NRILLWDTRCPKPASQIG--CSAPGYLPTSLAWHPQQSEVFVFGDEN---------GTVSLVDTKSTSCVLSSAV 255 (344)
T ss_dssp -----SCEEEEETTSSSCEEECC------CCCEEEEEECSSCTTEEEEEETT---------SEEEEEESCC--CCEEEEC
T ss_pred -----cccccccccccceeeeee--cceeeccceeeeecCCCCcceEEeccC---------CcEEEEECCCCcEEEEEcC
Confidence 347788988765432211 1111111223333 45688887753 35788898765321 1111
Q ss_pred CCCCCCCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEE
Q 007468 227 RFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (602)
Q Consensus 227 ~~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~ 304 (602)
. ...-.+++.. +..+++.|+.++. |.+||..+..-..+ .+ ....-.++++
T Consensus 256 h-------~~~v~~v~fsp~g~~~lasgs~D~~----------------i~vwd~~~~~~~~~--~~---H~~~V~~v~~ 307 (344)
T 4gqb_B 256 H-------SQCVTGLVFSPHSVPFLASLSEDCS----------------LAVLDSSLSELFRS--QA---HRDFVRDATW 307 (344)
T ss_dssp C-------SSCEEEEEECSSSSCCEEEEETTSC----------------EEEECTTCCEEEEE--CC---CSSCEEEEEE
T ss_pred C-------CCCEEEEEEccCCCeEEEEEeCCCe----------------EEEEECCCCcEEEE--cC---CCCCEEEEEE
Confidence 1 1111222222 3356777777665 77888877653332 22 1112233444
Q ss_pred E--CCeEEEeccccc
Q 007468 305 H--KKRALLFGGVVD 317 (602)
Q Consensus 305 ~--~~~lyv~GG~~~ 317 (602)
. +..|++.||.++
T Consensus 308 sp~~~~llas~s~D~ 322 (344)
T 4gqb_B 308 SPLNHSLLTTVGWDH 322 (344)
T ss_dssp CSSSTTEEEEEETTS
T ss_pred eCCCCeEEEEEcCCC
Confidence 3 445777777643
No 99
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=95.25 E-value=0.66 Score=47.24 Aligned_cols=189 Identities=10% Similarity=0.017 Sum_probs=96.3
Q ss_pred EEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE---CCEEEEEeCccCCCCCC
Q 007468 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQE 150 (602)
Q Consensus 74 ~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~---~~~iyV~GG~~~~~~~~ 150 (602)
+.+.| ++++++.|+. -..|.+||+.+.+-...-... . ..-.++.+ +..+++.||.+
T Consensus 145 v~~sp--dg~~l~sgs~---------dg~v~iwd~~~~~~~~~~~~h--~--~~v~~v~~s~~~~~~~~s~~~d------ 203 (357)
T 4g56_B 145 LSVFS--DGTQAVSGGK---------DFSVKVWDLSQKAVLKSYNAH--S--SEVNCVAACPGKDTIFLSCGED------ 203 (357)
T ss_dssp EEECS--SSSEEEEEET---------TSCEEEEETTTTEEEEEECCC--S--SCEEEEEECTTCSSCEEEEETT------
T ss_pred EEECC--CCCEEEEEeC---------CCeEEEEECCCCcEEEEEcCC--C--CCEEEEEEccCCCceeeeeccC------
Confidence 34454 5667777762 236788999887654332211 1 11122222 23467777653
Q ss_pred cceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE---CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccC
Q 007468 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (602)
Q Consensus 151 ~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~---~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~ 227 (602)
..+.+||+.+.+-..... .........++.+ ++.+++.|+.+ ..|.+||+.+..-...-..
T Consensus 204 -----g~v~~wd~~~~~~~~~~~--~~~~~~~v~~v~~sp~~~~~la~g~~d---------~~i~~wd~~~~~~~~~~~~ 267 (357)
T 4g56_B 204 -----GRILLWDTRKPKPATRID--FCASDTIPTSVTWHPEKDDTFACGDET---------GNVSLVNIKNPDSAQTSAV 267 (357)
T ss_dssp -----SCEEECCTTSSSCBCBCC--CTTCCSCEEEEEECTTSTTEEEEEESS---------SCEEEEESSCGGGCEEECC
T ss_pred -----CceEEEECCCCceeeeee--eccccccccchhhhhcccceEEEeecc---------cceeEEECCCCcEeEEEec
Confidence 246778887764322211 1111122233333 35677777753 3578889876542211111
Q ss_pred CCCCCCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE
Q 007468 228 FGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (602)
Q Consensus 228 ~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~ 305 (602)
. ...-.+++.. +..+++.|+.++. |.+||+.+.+-... .+ ....-.++++.
T Consensus 268 -----~-~~~v~~l~~sp~~~~~lasgs~D~~----------------i~iwd~~~~~~~~~--~~---H~~~V~~vafs 320 (357)
T 4g56_B 268 -----H-SQNITGLAYSYHSSPFLASISEDCT----------------VAVLDADFSEVFRD--LS---HRDFVTGVAWS 320 (357)
T ss_dssp -----C-SSCEEEEEECSSSSCCEEEEETTSC----------------EEEECTTSCEEEEE--CC---CSSCEEEEEEC
T ss_pred -----c-ceeEEEEEEcCCCCCEEEEEeCCCE----------------EEEEECCCCcEeEE--CC---CCCCEEEEEEe
Confidence 1 1111122222 3466677776655 78889877654333 22 11122334443
Q ss_pred --CCeEEEeccccccccccccccccccCeeEEEECCC
Q 007468 306 --KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (602)
Q Consensus 306 --~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t 340 (602)
++.+++.||.++ .|.+|++.+
T Consensus 321 P~d~~~l~s~s~Dg--------------~v~iW~~~~ 343 (357)
T 4g56_B 321 PLDHSKFTTVGWDH--------------KVLHHHLPS 343 (357)
T ss_dssp SSSTTEEEEEETTS--------------CEEEEECC-
T ss_pred CCCCCEEEEEcCCC--------------eEEEEECCC
Confidence 577888888653 477777643
No 100
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=95.22 E-value=2.4 Score=40.95 Aligned_cols=177 Identities=10% Similarity=0.067 Sum_probs=91.9
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~ 159 (602)
++.|||.+.. ..+.|++||+.......+.... ...-+.+++. ++.|||.... ...++
T Consensus 88 ~g~l~v~~~~--------~~~~i~~~d~~g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~-----------~~~i~ 145 (286)
T 1q7f_A 88 SGDIIVTERS--------PTHQIQIYNQYGQFVRKFGATI---LQHPRGVTVDNKGRIIVVECK-----------VMRVI 145 (286)
T ss_dssp TTEEEEEECG--------GGCEEEEECTTSCEEEEECTTT---CSCEEEEEECTTSCEEEEETT-----------TTEEE
T ss_pred CCeEEEEcCC--------CCCEEEEECCCCcEEEEecCcc---CCCceEEEEeCCCCEEEEECC-----------CCEEE
Confidence 5788887631 1246888996655444443221 1122333333 5678887542 24688
Q ss_pred EEECCCCcEEEcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccc
Q 007468 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238 (602)
Q Consensus 160 ~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~ 238 (602)
+||+.......+.... ....-+++++. ++.||+.... .+.|++||+.......+... +....|
T Consensus 146 ~~~~~g~~~~~~~~~~--~~~~p~~i~~~~~g~l~v~~~~---------~~~i~~~~~~g~~~~~~~~~--g~~~~p--- 209 (286)
T 1q7f_A 146 IFDQNGNVLHKFGCSK--HLEFPNGVVVNDKQEIFISDNR---------AHCVKVFNYEGQYLRQIGGE--GITNYP--- 209 (286)
T ss_dssp EECTTSCEEEEEECTT--TCSSEEEEEECSSSEEEEEEGG---------GTEEEEEETTCCEEEEESCT--TTSCSE---
T ss_pred EEcCCCCEEEEeCCCC--ccCCcEEEEECCCCCEEEEECC---------CCEEEEEcCCCCEEEEEccC--CccCCC---
Confidence 8998765544443211 11111233332 5788886542 35789999866544444322 111111
Q ss_pred eeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEec
Q 007468 239 FQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFG 313 (602)
Q Consensus 239 ~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~G 313 (602)
.++++. ++.|||...... ..+.+|++....-..+.... +. ..-+++++. +++||+..
T Consensus 210 ~~i~~d~~G~l~v~~~~~~---------------~~i~~~~~~g~~~~~~~~~~--~~-~~~~~i~~~~~g~l~vs~ 268 (286)
T 1q7f_A 210 IGVGINSNGEILIADNHNN---------------FNLTIFTQDGQLISALESKV--KH-AQCFDVALMDDGSVVLAS 268 (286)
T ss_dssp EEEEECTTCCEEEEECSSS---------------CEEEEECTTSCEEEEEEESS--CC-SCEEEEEEETTTEEEEEE
T ss_pred cEEEECCCCCEEEEeCCCC---------------EEEEEECCCCCEEEEEcccC--CC-CcceeEEECCCCcEEEEC
Confidence 233433 678888765432 13888887655444443211 11 112344444 67888873
No 101
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=95.20 E-value=1.4 Score=46.04 Aligned_cols=65 Identities=11% Similarity=-0.011 Sum_probs=36.1
Q ss_pred CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEE
Q 007468 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214 (602)
Q Consensus 135 ~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~y 214 (602)
+.+++.|+.+ ..+.+||+.+......-..+ ......+.+.. ++.+++.|+.+ ..|.+|
T Consensus 210 ~~~l~s~~~d-----------~~i~vwd~~~~~~~~~~~~~-h~~~v~~~~~s-d~~~l~s~~~d---------~~v~vw 267 (450)
T 2vdu_B 210 HQFIITSDRD-----------EHIKISHYPQCFIVDKWLFG-HKHFVSSICCG-KDYLLLSAGGD---------DKIFAW 267 (450)
T ss_dssp CEEEEEEETT-----------SCEEEEEESCTTCEEEECCC-CSSCEEEEEEC-STTEEEEEESS---------SEEEEE
T ss_pred CcEEEEEcCC-----------CcEEEEECCCCceeeeeecC-CCCceEEEEEC-CCCEEEEEeCC---------CeEEEE
Confidence 6677777653 35778888766533221111 11111222222 67777777743 468889
Q ss_pred ECCCCce
Q 007468 215 DLDQFKW 221 (602)
Q Consensus 215 d~~t~~W 221 (602)
|+.+.+.
T Consensus 268 d~~~~~~ 274 (450)
T 2vdu_B 268 DWKTGKN 274 (450)
T ss_dssp ETTTCCE
T ss_pred ECCCCcE
Confidence 9888764
No 102
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.20 E-value=1.1 Score=46.77 Aligned_cols=172 Identities=13% Similarity=0.125 Sum_probs=89.4
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEc-ccCCCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSP 179 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~-~~~~~p~~ 179 (602)
..|.+||+.+.+....-.. ......++.+.+.+++.|+.+ ..+.+||+.+..-... .. ....
T Consensus 193 g~i~vwd~~~~~~~~~~~~----h~~~v~~l~~~~~~l~s~s~d-----------g~i~vwd~~~~~~~~~~~~--~~~~ 255 (435)
T 1p22_A 193 STVRVWDVNTGEMLNTLIH----HCEAVLHLRFNNGMMVTCSKD-----------RSIAVWDMASPTDITLRRV--LVGH 255 (435)
T ss_dssp SCEEEEESSSCCEEEEECC----CCSCEEEEECCTTEEEEEETT-----------SCEEEEECSSSSCCEEEEE--ECCC
T ss_pred CeEEEEECCCCcEEEEEcC----CCCcEEEEEEcCCEEEEeeCC-----------CcEEEEeCCCCCCceeeeE--ecCC
Confidence 4678888887765433221 112223334455566676643 3477888876542111 11 1111
Q ss_pred CcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCC
Q 007468 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVS 259 (602)
Q Consensus 180 R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~ 259 (602)
.....++.+++..++.|+.+ ..+.+||+.+..-...-.. ......++.+++.+++.|+.++.
T Consensus 256 ~~~v~~~~~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~l~~g~~dg~-- 317 (435)
T 1p22_A 256 RAAVNVVDFDDKYIVSASGD---------RTIKVWNTSTCEFVRTLNG-------HKRGIACLQYRDRLVVSGSSDNT-- 317 (435)
T ss_dssp SSCEEEEEEETTEEEEEETT---------SEEEEEETTTCCEEEEEEC-------CSSCEEEEEEETTEEEEEETTSC--
T ss_pred CCcEEEEEeCCCEEEEEeCC---------CeEEEEECCcCcEEEEEcC-------CCCcEEEEEeCCCEEEEEeCCCe--
Confidence 22223344466666666653 4688899887643222111 11112233346667778887665
Q ss_pred CccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEeccccccccccccccccccCeeEEEECC
Q 007468 260 TDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (602)
Q Consensus 260 ~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~ 339 (602)
+.+||+.+..-...-. + .. ....++..++.+++.|+.+ ..|.+||+.
T Consensus 318 --------------i~iwd~~~~~~~~~~~-~---h~-~~v~~~~~~~~~l~sg~~d--------------g~i~vwd~~ 364 (435)
T 1p22_A 318 --------------IRLWDIECGACLRVLE-G---HE-ELVRCIRFDNKRIVSGAYD--------------GKIKVWDLV 364 (435)
T ss_dssp --------------EEEEETTTCCEEEEEC-C---CS-SCEEEEECCSSEEEEEETT--------------SCEEEEEHH
T ss_pred --------------EEEEECCCCCEEEEEe-C---Cc-CcEEEEEecCCEEEEEeCC--------------CcEEEEECC
Confidence 8889987654322211 1 11 1122333377778888764 348888864
Q ss_pred C
Q 007468 340 N 340 (602)
Q Consensus 340 t 340 (602)
+
T Consensus 365 ~ 365 (435)
T 1p22_A 365 A 365 (435)
T ss_dssp H
T ss_pred C
Confidence 4
No 103
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=95.15 E-value=1.5 Score=43.72 Aligned_cols=174 Identities=9% Similarity=0.033 Sum_probs=90.5
Q ss_pred CcEEEEEcCCCcEEE-ecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCC
Q 007468 101 GDLYRYDVEKQEWKV-ISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~-l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~ 178 (602)
..|.+||+.+.+-.. +.... . . ..+++.. ++.+++.|+.. ..+.+|++.+..-...-. ..
T Consensus 102 ~~i~lWd~~~~~~~~~~~~~~--~-~-~~~~~~spdg~~l~~g~~d-----------g~v~i~~~~~~~~~~~~~---~~ 163 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSIDAGP--V-D-AWTLAFSPDSQYLATGTHV-----------GKVNIFGVESGKKEYSLD---TR 163 (321)
T ss_dssp SEEEEEETTTTEEEEEEECCT--T-C-CCCEEECTTSSEEEEECTT-----------SEEEEEETTTCSEEEEEE---CS
T ss_pred CcEEEEECCCCCEEEEEeCCC--c-c-EEEEEECCCCCEEEEEcCC-----------CcEEEEEcCCCceeEEec---CC
Confidence 467888888775432 22211 1 1 1122222 45666677642 457788887765332211 11
Q ss_pred CCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCcc
Q 007468 179 PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYS 255 (602)
Q Consensus 179 ~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~ 255 (602)
.. ...++.+ ++++++.|+.+ ..+.+||+.+.+-...-.. . ..+ -.+++.. ++.+++.|+.+
T Consensus 164 ~~-~v~~~~~spdg~~lasg~~d---------g~i~iwd~~~~~~~~~~~~--h--~~~--v~~l~~spd~~~l~s~s~d 227 (321)
T 3ow8_A 164 GK-FILSIAYSPDGKYLASGAID---------GIINIFDIATGKLLHTLEG--H--AMP--IRSLTFSPDSQLLVTASDD 227 (321)
T ss_dssp SS-CEEEEEECTTSSEEEEEETT---------SCEEEEETTTTEEEEEECC--C--SSC--CCEEEECTTSCEEEEECTT
T ss_pred Cc-eEEEEEECCCCCEEEEEcCC---------CeEEEEECCCCcEEEEEcc--c--CCc--eeEEEEcCCCCEEEEEcCC
Confidence 11 1122233 56777777754 3588899887653222111 0 111 1122222 67788888877
Q ss_pred CCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEeccccccccccccccccccCeeE
Q 007468 256 KEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (602)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~ 334 (602)
+. +.+||+.+......-. + ....-.++++. ++.+++.|+.+ ..|.
T Consensus 228 g~----------------i~iwd~~~~~~~~~~~-~---h~~~v~~~~~sp~~~~l~s~s~D--------------~~v~ 273 (321)
T 3ow8_A 228 GY----------------IKIYDVQHANLAGTLS-G---HASWVLNVAFCPDDTHFVSSSSD--------------KSVK 273 (321)
T ss_dssp SC----------------EEEEETTTCCEEEEEC-C---CSSCEEEEEECTTSSEEEEEETT--------------SCEE
T ss_pred Ce----------------EEEEECCCcceeEEEc-C---CCCceEEEEECCCCCEEEEEeCC--------------CcEE
Confidence 66 7888887665433211 1 11112233333 56677777754 3488
Q ss_pred EEECCCCc
Q 007468 335 GFQLDNHR 342 (602)
Q Consensus 335 ~yd~~t~~ 342 (602)
+||+.+.+
T Consensus 274 iwd~~~~~ 281 (321)
T 3ow8_A 274 VWDVGTRT 281 (321)
T ss_dssp EEETTTTE
T ss_pred EEeCCCCE
Confidence 99987653
No 104
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=95.10 E-value=1.1 Score=43.69 Aligned_cols=209 Identities=7% Similarity=-0.088 Sum_probs=107.1
Q ss_pred cceEEEEecCCCC-EEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCC
Q 007468 70 SNCSLNINPLKET-ELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSP 147 (602)
Q Consensus 70 ~~~s~~~~~~~~~-~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~ 147 (602)
...+.++.| ++ .||+.+.. .+.|++||+.+. ...+... . ..-++++.. ++.||+....
T Consensus 29 ~~eg~~~d~--~g~~l~~~~~~---------~~~i~~~~~~~~-~~~~~~~---~-~~~~~l~~~~dg~l~v~~~~---- 88 (296)
T 3e5z_A 29 WTEGPVYVP--ARSAVIFSDVR---------QNRTWAWSDDGQ-LSPEMHP---S-HHQNGHCLNKQGHLIACSHG---- 88 (296)
T ss_dssp SEEEEEEEG--GGTEEEEEEGG---------GTEEEEEETTSC-EEEEESS---C-SSEEEEEECTTCCEEEEETT----
T ss_pred cccCCeEeC--CCCEEEEEeCC---------CCEEEEEECCCC-eEEEECC---C-CCcceeeECCCCcEEEEecC----
Confidence 445566665 44 48887752 347899999988 6665431 1 122333332 5678776532
Q ss_pred CCCcceecCeEEEEECCCCcEEEcccC--CCCCCCcccEEEEECCEEEEE----cCccCC----CCCeeeeceEEEEECC
Q 007468 148 NQERFHHYKDFWMLDLKTNQWEQLNLK--GCPSPRSGHRMVLYKHKIIVF----GGFYDT----LREVRYYNDLYVFDLD 217 (602)
Q Consensus 148 ~~~~~~~~~dv~~yd~~t~~W~~~~~~--~~p~~R~~h~~~~~~~~Lyv~----GG~~~~----~~~~~~~~~v~~yd~~ 217 (602)
...+++||+.+.+...+... +.+..+....++.-+++||+. |..... .........|++|++.
T Consensus 89 -------~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (296)
T 3e5z_A 89 -------LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD 161 (296)
T ss_dssp -------TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT
T ss_pred -------CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC
Confidence 24689999988887765331 111112222222236788886 432100 0000013479999987
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCC-CCee-EEeec-CCCC
Q 007468 218 QFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR-TWEW-SKVKK-IGMP 293 (602)
Q Consensus 218 t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~-t~~W-~~l~~-~g~~ 293 (602)
.....+... ...+ .+++.. ++.+++...... .+++|++. +.+. ..... ....
T Consensus 162 -g~~~~~~~~----~~~~---~gi~~s~dg~~lv~~~~~~----------------~i~~~~~~~~g~~~~~~~~~~~~~ 217 (296)
T 3e5z_A 162 -GTLSAPIRD----RVKP---NGLAFLPSGNLLVSDTGDN----------------ATHRYCLNARGETEYQGVHFTVEP 217 (296)
T ss_dssp -SCEEEEECC----CSSE---EEEEECTTSCEEEEETTTT----------------EEEEEEECSSSCEEEEEEEECCSS
T ss_pred -CCEEEeecC----CCCC---ccEEECCCCCEEEEeCCCC----------------eEEEEEECCCCcCcCCCeEeeCCC
Confidence 555544322 0111 233333 455555544332 38888875 4444 21111 1100
Q ss_pred CCCCceeEEEEE-CCeEEEeccccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 294 PGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 294 P~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
..| .++++- +++||+.. . +.|++||+.......+..
T Consensus 218 ~~p---~~i~~d~~G~l~v~~---~-------------~~v~~~~~~g~~~~~~~~ 254 (296)
T 3e5z_A 218 GKT---DGLRVDAGGLIWASA---G-------------DGVHVLTPDGDELGRVLT 254 (296)
T ss_dssp SCC---CSEEEBTTSCEEEEE---T-------------TEEEEECTTSCEEEEEEC
T ss_pred CCC---CeEEECCCCCEEEEc---C-------------CeEEEECCCCCEEEEEEC
Confidence 111 134443 67787765 1 348999998655555554
No 105
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=95.09 E-value=0.78 Score=45.32 Aligned_cols=131 Identities=5% Similarity=-0.051 Sum_probs=70.6
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv 158 (602)
.+.+|+.+.. .+.|.+||+.+++........ .....+++. +..+|+.+.. ...+
T Consensus 9 ~~~~~v~~~~---------~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~-----------~~~i 64 (331)
T 3u4y_A 9 SNFGIVVEQH---------LRRISFFSTDTLEILNQITLG----YDFVDTAITSDCSNVVVTSDF-----------CQTL 64 (331)
T ss_dssp CCEEEEEEGG---------GTEEEEEETTTCCEEEEEECC----CCEEEEEECSSSCEEEEEEST-----------TCEE
T ss_pred CCEEEEEecC---------CCeEEEEeCcccceeeeEEcc----CCcceEEEcCCCCEEEEEeCC-----------CCeE
Confidence 4778887762 358999999999886553321 111222222 3457777652 2468
Q ss_pred EEEECCCCcE--EEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCC
Q 007468 159 WMLDLKTNQW--EQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (602)
Q Consensus 159 ~~yd~~t~~W--~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~ 234 (602)
++||+.+.+. ..+.. ...+ .++++.. +++|| .+..... ...+++||+.+......-..
T Consensus 65 ~~~d~~~~~~~~~~~~~--~~~~--~~~~~~s~dg~~l~-~~~~~~~------~~~i~v~d~~~~~~~~~~~~------- 126 (331)
T 3u4y_A 65 VQIETQLEPPKVVAIQE--GQSS--MADVDITPDDQFAV-TVTGLNH------PFNMQSYSFLKNKFISTIPI------- 126 (331)
T ss_dssp EEEECSSSSCEEEEEEE--CSSC--CCCEEECTTSSEEE-ECCCSSS------SCEEEEEETTTTEEEEEEEC-------
T ss_pred EEEECCCCceeEEeccc--CCCC--ccceEECCCCCEEE-EecCCCC------cccEEEEECCCCCeEEEEEC-------
Confidence 9999988874 22222 1122 2213333 34566 3322110 13799999988765443322
Q ss_pred CccceeEEEe-CC-EEEEEcC
Q 007468 235 PRSGFQFFVY-QD-EVFLYGG 253 (602)
Q Consensus 235 ~R~~~~~~~~-~~-~Iyv~GG 253 (602)
...-+.++.. ++ .||+.+.
T Consensus 127 ~~~~~~~~~spdg~~l~~~~~ 147 (331)
T 3u4y_A 127 PYDAVGIAISPNGNGLILIDR 147 (331)
T ss_dssp CTTEEEEEECTTSSCEEEEEE
T ss_pred CCCccceEECCCCCEEEEEec
Confidence 1112344444 33 5777654
No 106
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.99 E-value=0.62 Score=52.64 Aligned_cols=194 Identities=10% Similarity=-0.022 Sum_probs=96.0
Q ss_pred EEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 007468 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (602)
Q Consensus 73 s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~ 151 (602)
++.+.| ++..+++|+. ...+.+||..++.....-... ...-.+++.. ++..++.|+..
T Consensus 60 ~~~~s~--~~~~l~~~~~---------dg~i~vw~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~d------- 118 (814)
T 3mkq_A 60 AGKFIA--RKNWIIVGSD---------DFRIRVFNYNTGEKVVDFEAH---PDYIRSIAVHPTKPYVLSGSDD------- 118 (814)
T ss_dssp EEEEEG--GGTEEEEEET---------TSEEEEEETTTCCEEEEEECC---SSCEEEEEECSSSSEEEEEETT-------
T ss_pred EEEEeC--CCCEEEEEeC---------CCeEEEEECCCCcEEEEEecC---CCCEEEEEEeCCCCEEEEEcCC-------
Confidence 344455 5667777762 246889999888765432211 1111122222 44455566532
Q ss_pred ceecCeEEEEECCCC-cEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCC
Q 007468 152 FHHYKDFWMLDLKTN-QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (602)
Q Consensus 152 ~~~~~dv~~yd~~t~-~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~ 228 (602)
..+.+||+.++ .....-. .. ...-.+++.. ++.+++.|+.+ ..|.+||+.+..-......
T Consensus 119 ----g~i~vw~~~~~~~~~~~~~--~~-~~~v~~~~~~p~~~~~l~~~~~d---------g~v~vwd~~~~~~~~~~~~- 181 (814)
T 3mkq_A 119 ----LTVKLWNWENNWALEQTFE--GH-EHFVMCVAFNPKDPSTFASGCLD---------RTVKVWSLGQSTPNFTLTT- 181 (814)
T ss_dssp ----SEEEEEEGGGTSEEEEEEE--CC-SSCEEEEEEETTEEEEEEEEETT---------SEEEEEETTCSSCSEEEEC-
T ss_pred ----CEEEEEECCCCceEEEEEc--CC-CCcEEEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCcceeEEec-
Confidence 35778888766 3322211 11 1111222222 35677777753 4688888866543222221
Q ss_pred CCCCCCCccceeEEEe---CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE
Q 007468 229 GSMWPSPRSGFQFFVY---QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (602)
Q Consensus 229 ~~~~P~~R~~~~~~~~---~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~ 305 (602)
.....-..++.. ++.+++.|+.++. +.+||+.+..-...-.. ....-.++++.
T Consensus 182 ----~~~~~v~~~~~~~~~~~~~l~~~~~dg~----------------i~~~d~~~~~~~~~~~~----~~~~v~~~~~~ 237 (814)
T 3mkq_A 182 ----GQERGVNYVDYYPLPDKPYMITASDDLT----------------IKIWDYQTKSCVATLEG----HMSNVSFAVFH 237 (814)
T ss_dssp ----CCTTCCCEEEECCSTTCCEEEEECTTSE----------------EEEEETTTTEEEEEEEC----CSSCEEEEEEC
T ss_pred ----CCCCCEEEEEEEECCCCCEEEEEeCCCE----------------EEEEECCCCcEEEEEcC----CCCCEEEEEEc
Confidence 111111222222 5667777776654 78888876653322111 11112233333
Q ss_pred -CCeEEEeccccccccccccccccccCeeEEEECCCCc
Q 007468 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 306 -~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
++.+++.|+.++ .|.+||+.+.+
T Consensus 238 ~~~~~l~~~~~dg--------------~v~vwd~~~~~ 261 (814)
T 3mkq_A 238 PTLPIIISGSEDG--------------TLKIWNSSTYK 261 (814)
T ss_dssp SSSSEEEEEETTS--------------CEEEEETTTCS
T ss_pred CCCCEEEEEeCCC--------------eEEEEECCCCc
Confidence 456777776532 36777776543
No 107
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=94.97 E-value=0.56 Score=47.00 Aligned_cols=184 Identities=12% Similarity=0.053 Sum_probs=84.8
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCC--CcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecC
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEK--QEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYK 156 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~--~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~ 156 (602)
++.+++.|+. -..|.+||+.. ..+..+.... .......++.+ ++.+++.|+.+.
T Consensus 118 ~g~~las~s~---------D~~v~iwd~~~~~~~~~~~~~~~--~h~~~v~~v~~~p~~~~l~s~s~D~----------- 175 (330)
T 2hes_X 118 DGYYLATCSR---------DKSVWIWETDESGEEYECISVLQ--EHSQDVKHVIWHPSEALLASSSYDD----------- 175 (330)
T ss_dssp TSCEEEEEET---------TSCEEEEECCTTCCCCEEEEEEC--CCSSCEEEEEECSSSSEEEEEETTS-----------
T ss_pred CCCEEEEEeC---------CCEEEEEeccCCCCCeEEEEEec--cCCCceEEEEECCCCCEEEEEcCCC-----------
Confidence 4566666662 23677888742 2343322111 11111222333 456677776532
Q ss_pred eEEEEECCCCcEEEcccCCCCCCCcccEEEEE--C--CEEEEEcCccCCCCCeeeeceEEEEECCC------CceEEecc
Q 007468 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K--HKIIVFGGFYDTLREVRYYNDLYVFDLDQ------FKWQEIKP 226 (602)
Q Consensus 157 dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~--~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t------~~W~~v~~ 226 (602)
.+.+||..+..|..+......... -.++.+ + +.+++.|+.+. .|.+||+.+ ..|..+..
T Consensus 176 ~i~iW~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~~l~s~s~D~---------~v~iw~~~~~~~~~~~~~~~~~~ 244 (330)
T 2hes_X 176 TVRIWKDYDDDWECVAVLNGHEGT--VWSSDFDKTEGVFRLCSGSDDS---------TVRVWKYMGDDEDDQQEWVCEAI 244 (330)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSC--EEEEEECCSSSSCEEEEEETTS---------CEEEEEEEEECTTSCEEEEEEEE
T ss_pred eEEEEECCCCCeeEEEEccCCCCc--EEEEEecCCCCeeEEEEEeCCC---------eEEEEEecCCCccccceeEEeee
Confidence 366777777777655431111111 112222 2 34556666543 344454432 24555544
Q ss_pred CCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-
Q 007468 227 RFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH- 305 (602)
Q Consensus 227 ~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~- 305 (602)
.+. .....-.+++...+.+++.||.++. +.+|+..+..|..+...........-.+++..
T Consensus 245 ~~~---~h~~~v~~v~~s~~~~l~s~~~dg~----------------v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~ 305 (330)
T 2hes_X 245 LPD---VHKRQVYNVAWGFNGLIASVGADGV----------------LAVYEEVDGEWKVFAKRALCHGVYEINVVKWLE 305 (330)
T ss_dssp CCS---CCSSCEEEEEECTTSCEEEEETTSC----------------EEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-
T ss_pred ccc---ccccceEEEEEcCCCEEEEEeCCCE----------------EEEEEcCCCceEEEeccccccccceEEEEEEec
Confidence 411 1122222333334456777777665 77788778888665332000111011223332
Q ss_pred --CCeEEEecccc
Q 007468 306 --KKRALLFGGVV 316 (602)
Q Consensus 306 --~~~lyv~GG~~ 316 (602)
++.+++.||.+
T Consensus 306 ~~~~~~las~s~D 318 (330)
T 2hes_X 306 LNGKTILATGGDD 318 (330)
T ss_dssp ----CCEEEEETT
T ss_pred CCCceEEEEecCC
Confidence 46677888764
No 108
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=94.95 E-value=3.3 Score=41.24 Aligned_cols=199 Identities=10% Similarity=0.010 Sum_probs=103.8
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCC--cEEEcccCCC-
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKGC- 176 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~~~~~~~~- 176 (602)
+.++++|+.+.+........ .-..-+.+++. ++.|||.... ...+.+||+... .-..+...+.
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~--~~~~p~gia~d~~g~l~v~d~~-----------~~~v~~~~~~g~~~~~~~~~~~~~~ 135 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKN--LFYLPHGLSIDTDGNYWVTDVA-----------LHQVFKLDPHSKEGPLLILGRSMQP 135 (329)
T ss_dssp CCEEEECTTTCCEEEEECTT--TCSSEEEEEECTTSCEEEEETT-----------TTEEEEECTTCSSCCSEEESBTTBC
T ss_pred CcEEEEECCCCeEEeccCCC--ccCCceEEEECCCCCEEEEECC-----------CCEEEEEeCCCCeEEEEEecccCCC
Confidence 46999999877765432211 11122333333 5679987643 246889998765 2222221111
Q ss_pred ---CCCCcc-cEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCC--CCCCcc-ceeEEEe-C-
Q 007468 177 ---PSPRSG-HRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM--WPSPRS-GFQFFVY-Q- 245 (602)
Q Consensus 177 ---p~~R~~-h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~--~P~~R~-~~~~~~~-~- 245 (602)
...... ..+++. ++.|||..++. .+.|.+|++....-..+.....+. .+.... -+++++. +
T Consensus 136 g~~~~~~~~P~~ia~~~~~g~lyv~d~~~--------~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~ 207 (329)
T 3fvz_A 136 GSDQNHFCQPTDVAVEPSTGAVFVSDGYC--------NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL 207 (329)
T ss_dssp CCSTTCCSSEEEEEECTTTCCEEEEECSS--------CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTT
T ss_pred CCCccccCCCcEEEEeCCCCeEEEEeCCC--------CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCC
Confidence 111112 233443 57899987531 257889986554433333221110 011111 1334444 4
Q ss_pred CEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEeccccccccccccc
Q 007468 246 DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVI 325 (602)
Q Consensus 246 ~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~ 325 (602)
+.|||....+.. |.+|++.+.+....-.. +.....-.++++..+.+|+..|.....
T Consensus 208 g~l~v~d~~~~~----------------I~~~~~~~G~~~~~~~~--~~~~~~~~~~~~~pg~~~~~~g~~~v~------ 263 (329)
T 3fvz_A 208 DQLCVADRENGR----------------IQCFKTDTKEFVREIKH--ASFGRNVFAISYIPGFLFAVNGKPYFG------ 263 (329)
T ss_dssp TEEEEEETTTTE----------------EEEEETTTCCEEEEECC--TTTTTCEEEEEEETTEEEEEECCCCTT------
T ss_pred CEEEEEECCCCE----------------EEEEECCCCcEEEEEec--cccCCCcceeeecCCEEEEeCCCEEec------
Confidence 899998765544 88999986665544321 112222334555557777776643211
Q ss_pred cccccCeeEEEECCCCceEE
Q 007468 326 MSLFLNELYGFQLDNHRWYP 345 (602)
Q Consensus 326 ~~~~~ndv~~yd~~t~~W~~ 345 (602)
....+.|++|++.+.+...
T Consensus 264 -~~~~~~v~~~~~~~g~~~~ 282 (329)
T 3fvz_A 264 -DQEPVQGFVMNFSSGEIID 282 (329)
T ss_dssp -CSCCCCEEEEETTTCCEEE
T ss_pred -cCCCcEEEEEEcCCCeEEE
Confidence 1223579999988876554
No 109
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=94.92 E-value=6.1 Score=44.09 Aligned_cols=119 Identities=15% Similarity=0.154 Sum_probs=68.2
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCC--cEEEecCCCCC---CC---ceeeEEEEECCEEEEEeCccCCCCCCcc
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSP---PP---RSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~--~W~~l~~~~~P---~~---R~~hs~~~~~~~iyV~GG~~~~~~~~~~ 152 (602)
++.||+... .+.|+++|..+. .|+.-...... .. ....+.++.++.||+...
T Consensus 66 ~g~vyv~~~----------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---------- 125 (668)
T 1kv9_A 66 DGVIYTSMS----------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL---------- 125 (668)
T ss_dssp TTEEEEEEG----------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT----------
T ss_pred CCEEEEECC----------CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC----------
Confidence 788888754 247899998877 48864321100 00 011234556888887542
Q ss_pred eecCeEEEEECCCC--cEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCc--eEEec
Q 007468 153 HHYKDFWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIK 225 (602)
Q Consensus 153 ~~~~dv~~yd~~t~--~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~--W~~v~ 225 (602)
-..++.||..+. .|+.-............+.++.++.||+..+.... .....|+.||+.+.+ |+.-.
T Consensus 126 --dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~----~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 126 --DGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEY----GVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp --TSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTT----CCBCEEEEEETTTCCEEEEEES
T ss_pred --CCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCc----CCCCEEEEEECCCCcEEEEecc
Confidence 146889999887 48765421111112222345668888874332111 124579999998865 87643
No 110
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=94.86 E-value=3.3 Score=46.36 Aligned_cols=196 Identities=11% Similarity=-0.015 Sum_probs=100.0
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCE-EEEEeCccCCC--CCCcceecCeEEEEECCCCcE--EEcccCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNY-LYIFGGEFTSP--NQERFHHYKDFWMLDLKTNQW--EQLNLKG 175 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~-iyV~GG~~~~~--~~~~~~~~~dv~~yd~~t~~W--~~~~~~~ 175 (602)
..|+++|+.+++...... +..+....+.. +++ ||+.. ..... ..........||++++.+..= ..+-.
T Consensus 155 ~~i~v~dl~tg~~~~~~~---~~~k~~~~~Ws-Dg~~l~y~~-~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~-- 227 (693)
T 3iuj_A 155 REIHLMDVESKQPLETPL---KDVKFSGISWL-GNEGFFYSS-YDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFG-- 227 (693)
T ss_dssp EEEEEEETTTCSEEEEEE---EEEESCCCEEE-TTTEEEEEE-SSCCC-------CCCCEEEEEETTSCGGGCEEEES--
T ss_pred EEEEEEECCCCCCCcccc---CCceeccEEEe-CCCEEEEEE-ecCcccccccccCCCcEEEEEECCCCcccceEEEe--
Confidence 478999999998765421 11222233334 544 44433 22110 000001235688888877642 11211
Q ss_pred CCC--CCcccEEEEE--CC-EEEEEcCccCCCCCeeeeceEEEEECCCC--ceEEeccCCCCCCCCCccceeEEEeCCEE
Q 007468 176 CPS--PRSGHRMVLY--KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQEIKPRFGSMWPSPRSGFQFFVYQDEV 248 (602)
Q Consensus 176 ~p~--~R~~h~~~~~--~~-~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~--~W~~v~~~~~~~~P~~R~~~~~~~~~~~I 248 (602)
.+. +... ..+.+ ++ .|++...... ..+.+|.+|+.+. .|..+... ..... ......++.|
T Consensus 228 ~~~~~~~~~-~~~~~SpDg~~l~~~~~~~~------~~~~i~~~d~~~~~~~~~~l~~~-----~~~~~-~~~~~~g~~l 294 (693)
T 3iuj_A 228 AIPAQHHRY-VGATVTEDDRFLLISAANST------SGNRLYVKDLSQENAPLLTVQGD-----LDADV-SLVDNKGSTL 294 (693)
T ss_dssp CSGGGCCSE-EEEEECTTSCEEEEEEESSS------SCCEEEEEETTSTTCCCEEEECS-----SSSCE-EEEEEETTEE
T ss_pred cCCCCCeEE-EEEEEcCCCCEEEEEEccCC------CCcEEEEEECCCCCCceEEEeCC-----CCceE-EEEeccCCEE
Confidence 121 1212 22223 44 4444332211 1368999998775 68877654 11211 1233458899
Q ss_pred EEEcCccCCCCCccCCCCCCceeeeEEEEeCCC---CeeEEeecCCCCCCCCceeEEEEECCeEEEeccccccccccccc
Q 007468 249 FLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT---WEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVI 325 (602)
Q Consensus 249 yv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t---~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~ 325 (602)
|+....... ...|+.+++.+ ..|+.+.+.. .... +....++.|++..-...
T Consensus 295 ~~~t~~~~~-------------~~~l~~~d~~~~~~~~~~~l~~~~----~~~~-~~s~~g~~lv~~~~~~g-------- 348 (693)
T 3iuj_A 295 YLLTNRDAP-------------NRRLVTVDAANPGPAHWRDLIPER----QQVL-TVHSGSGYLFAEYMVDA-------- 348 (693)
T ss_dssp EEEECTTCT-------------TCEEEEEETTSCCGGGCEEEECCC----SSCE-EEEEETTEEEEEEEETT--------
T ss_pred EEEECCCCC-------------CCEEEEEeCCCCCccccEEEecCC----CCEE-EEEEECCEEEEEEEECC--------
Confidence 998764321 24588898865 3588876531 1122 55555777665443221
Q ss_pred cccccCeeEEEECCCCceEEe
Q 007468 326 MSLFLNELYGFQLDNHRWYPL 346 (602)
Q Consensus 326 ~~~~~ndv~~yd~~t~~W~~l 346 (602)
...|+++++.......+
T Consensus 349 ----~~~l~~~d~~g~~~~~l 365 (693)
T 3iuj_A 349 ----TARVEQFDYEGKRVREV 365 (693)
T ss_dssp ----EEEEEEECTTSCEEEEE
T ss_pred ----eeEEEEEECCCCeeEEe
Confidence 35688888876544443
No 111
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=94.85 E-value=1.7 Score=42.61 Aligned_cols=185 Identities=10% Similarity=0.036 Sum_probs=94.5
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCc--EEEecCCCCCCCceeeEEEE-ECCEEEEEeCccCCCCCCcceecCe
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVS-WKNYLYIFGGEFTSPNQERFHHYKD 157 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~--W~~l~~~~~P~~R~~hs~~~-~~~~iyV~GG~~~~~~~~~~~~~~d 157 (602)
.+++++.|.. -+.|+++|+.+++ |+.-.. .....|.+++ -++.||+.+ -+.
T Consensus 4 ~~~~lv~~~~---------~~~v~~~d~~tG~~~w~~~~~----~~~~~~~~~~~pdG~ilvs~-------------~~~ 57 (276)
T 3no2_A 4 PQHLLVGGSG---------WNKIAIINKDTKEIVWEYPLE----KGWECNSVAATKAGEILFSY-------------SKG 57 (276)
T ss_dssp CCEEEEECTT---------CSEEEEEETTTTEEEEEEECC----TTCCCCEEEECTTSCEEEEC-------------BSE
T ss_pred CCcEEEeeCC---------CCEEEEEECCCCeEEEEeCCC----ccCCCcCeEECCCCCEEEeC-------------CCC
Confidence 4678888762 2578899997774 664421 1112233333 367777732 135
Q ss_pred EEEEECCCC--cEEEcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCC-ceEEeccCCCCCCC
Q 007468 158 FWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF-KWQEIKPRFGSMWP 233 (602)
Q Consensus 158 v~~yd~~t~--~W~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~-~W~~v~~~~~~~~P 233 (602)
++.||+ +. .|+.-.. .....+++..+ ++.+++..... ...++.||+... .|+.-... ....+
T Consensus 58 V~~~d~-~G~~~W~~~~~----~~~~~~~~~~~~dG~~lv~~~~~--------~~~v~~vd~~Gk~l~~~~~~~-~~~~~ 123 (276)
T 3no2_A 58 AKMITR-DGRELWNIAAP----AGCEMQTARILPDGNALVAWCGH--------PSTILEVNMKGEVLSKTEFET-GIERP 123 (276)
T ss_dssp EEEECT-TSCEEEEEECC----TTCEEEEEEECTTSCEEEEEEST--------TEEEEEECTTSCEEEEEEECC-SCSSG
T ss_pred EEEECC-CCCEEEEEcCC----CCccccccEECCCCCEEEEecCC--------CCEEEEEeCCCCEEEEEeccC-CCCcc
Confidence 888988 44 4664321 11122333333 55655543321 135788887543 24432211 00001
Q ss_pred CCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCC-CeeEEeecCCCCCCCCceeEEEEE-CCeEEE
Q 007468 234 SPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT-WEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (602)
Q Consensus 234 ~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t-~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv 311 (602)
...........++.+++.....+ .+.+||+.. ..|+.-... .| +++.+. ++.++|
T Consensus 124 ~~~~~~v~~~~~G~~lv~~~~~~----------------~v~~~d~~G~~~w~~~~~~--~~-----~~~~~~~~g~~~v 180 (276)
T 3no2_A 124 HAQFRQINKNKKGNYLVPLFATS----------------EVREIAPNGQLLNSVKLSG--TP-----FSSAFLDNGDCLV 180 (276)
T ss_dssp GGSCSCCEECTTSCEEEEETTTT----------------EEEEECTTSCEEEEEECSS--CC-----CEEEECTTSCEEE
T ss_pred cccccCceECCCCCEEEEecCCC----------------EEEEECCCCCEEEEEECCC--Cc-----cceeEcCCCCEEE
Confidence 11111122233566666544333 388999863 357654321 11 234444 677887
Q ss_pred eccccccccccccccccccCeeEEEECCCCc
Q 007468 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 312 ~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
++... +.|+.||+.+.+
T Consensus 181 ~~~~~--------------~~v~~~d~~tG~ 197 (276)
T 3no2_A 181 ACGDA--------------HCFVQLNLESNR 197 (276)
T ss_dssp ECBTT--------------SEEEEECTTTCC
T ss_pred EeCCC--------------CeEEEEeCcCCc
Confidence 76542 359999999664
No 112
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=94.81 E-value=3.7 Score=41.16 Aligned_cols=174 Identities=13% Similarity=0.084 Sum_probs=89.6
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~ 160 (602)
.+.+|++|-. .-|++..-...+|+.+.....+......++++.++.+|+.|-. ..+++
T Consensus 46 ~~~~~~~G~~----------g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~------------g~i~~ 103 (327)
T 2xbg_A 46 RHHGWLVGVN----------ATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEP------------PIMLH 103 (327)
T ss_dssp SSCEEEEETT----------TEEEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEET------------TEEEE
T ss_pred CCcEEEEcCC----------CeEEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECC------------CeEEE
Confidence 4677886531 1344443334589988643211122334444456788887521 22444
Q ss_pred EECCCCcEEEcccCCCCCCCcccEEEE-ECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccce
Q 007468 161 LDLKTNQWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGF 239 (602)
Q Consensus 161 yd~~t~~W~~~~~~~~p~~R~~h~~~~-~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~ 239 (602)
-.=.-.+|+.+.... +.+-..+.++. -++.+|+.|.. ..+++-.=.-.+|+.+... .+..-+
T Consensus 104 S~DgG~tW~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~----------g~v~~S~DgG~tW~~~~~~------~~~~~~ 166 (327)
T 2xbg_A 104 TTDGGQSWSQIPLDP-KLPGSPRLIKALGNGSAEMITNV----------GAIYRTKDSGKNWQALVQE------AIGVMR 166 (327)
T ss_dssp ESSTTSSCEECCCCT-TCSSCEEEEEEEETTEEEEEETT----------CCEEEESSTTSSEEEEECS------CCCCEE
T ss_pred ECCCCCCceECcccc-CCCCCeEEEEEECCCCEEEEeCC----------ccEEEEcCCCCCCEEeecC------CCcceE
Confidence 322356899986521 11112233333 36788887642 1244432234679998654 122334
Q ss_pred eEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEe-CCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEecc
Q 007468 240 QFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD-PRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGG 314 (602)
Q Consensus 240 ~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd-~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~GG 314 (602)
+++.. ++.+|++|- .+. +++-. ....+|+.+.. +.+...+.+++. ++.+|+++.
T Consensus 167 ~~~~~~~~~~~~~g~-~G~----------------~~~S~d~gG~tW~~~~~----~~~~~~~~~~~~~~g~~~~~~~ 223 (327)
T 2xbg_A 167 NLNRSPSGEYVAVSS-RGS----------------FYSTWEPGQTAWEPHNR----TTSRRLHNMGFTPDGRLWMIVN 223 (327)
T ss_dssp EEEECTTSCEEEEET-TSS----------------EEEEECTTCSSCEEEEC----CSSSCEEEEEECTTSCEEEEET
T ss_pred EEEEcCCCcEEEEEC-CCc----------------EEEEeCCCCCceeECCC----CCCCccceeEECCCCCEEEEeC
Confidence 44444 566666653 222 44443 33578999853 334445555543 567777653
No 113
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=94.79 E-value=3 Score=41.79 Aligned_cols=62 Identities=5% Similarity=0.024 Sum_probs=30.8
Q ss_pred EEEEeCCCCeeEEeecCCCCCCCCce-eEEEEE-CCe-EEEeccccccccccccccccccCeeEEEEC--CCCceEEeEe
Q 007468 274 LWSLDPRTWEWSKVKKIGMPPGPRAG-FSMCVH-KKR-ALLFGGVVDMEMKGDVIMSLFLNELYGFQL--DNHRWYPLEL 348 (602)
Q Consensus 274 v~~yd~~t~~W~~l~~~g~~P~~R~~-~s~~~~-~~~-lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~--~t~~W~~l~~ 348 (602)
+.+|++.+..+..+......|..... ..+++. +++ ||+.. ... .+.|.+|++ .+..+..+..
T Consensus 235 v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~-~~~------------~~~i~v~~~~~~~g~~~~~~~ 301 (361)
T 3scy_A 235 VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASN-RLK------------ADGVAIFKVDETNGTLTKVGY 301 (361)
T ss_dssp EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEE-CSS------------SCEEEEEEECTTTCCEEEEEE
T ss_pred EEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEEC-CCC------------CCEEEEEEEcCCCCcEEEeeE
Confidence 77777777777655433222222122 233333 444 55433 210 134677766 4667766554
No 114
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=94.77 E-value=3.5 Score=40.66 Aligned_cols=117 Identities=10% Similarity=0.016 Sum_probs=67.7
Q ss_pred CCCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccC
Q 007468 67 SPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFT 145 (602)
Q Consensus 67 ~~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~ 145 (602)
.+.....+++.+ ++.||+.-- ..+.|++||+....-..+.. +..-+.+++. ++.|||......
T Consensus 30 ~~~~pegia~~~--~g~lyv~d~---------~~~~I~~~d~~g~~~~~~~~-----~~~p~gia~~~dG~l~vad~~~~ 93 (306)
T 2p4o_A 30 VNTFLENLASAP--DGTIFVTNH---------EVGEIVSITPDGNQQIHATV-----EGKVSGLAFTSNGDLVATGWNAD 93 (306)
T ss_dssp TTCCEEEEEECT--TSCEEEEET---------TTTEEEEECTTCCEEEEEEC-----SSEEEEEEECTTSCEEEEEECTT
T ss_pred CCCCcceEEECC--CCCEEEEeC---------CCCeEEEECCCCceEEEEeC-----CCCceeEEEcCCCcEEEEeccCC
Confidence 345556666665 577888753 12468999988653222221 2233444443 567888753211
Q ss_pred CCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCC
Q 007468 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (602)
Q Consensus 146 ~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~ 219 (602)
...+++|++.+.+.+.+.. .+..+.....+.+ ++.+|+.-- ....+|++|+.+.
T Consensus 94 ---------~~~v~~~d~~~g~~~~~~~--~~~~~~~~g~~~~~~~~~~v~d~---------~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 94 ---------SIPVVSLVKSDGTVETLLT--LPDAIFLNGITPLSDTQYLTADS---------YRGAIWLIDVVQP 148 (306)
T ss_dssp ---------SCEEEEEECTTSCEEEEEE--CTTCSCEEEEEESSSSEEEEEET---------TTTEEEEEETTTT
T ss_pred ---------cceEEEEcCCCCeEEEEEe--CCCccccCcccccCCCcEEEEEC---------CCCeEEEEeCCCC
Confidence 1248889988888876654 3444554555544 456776532 1357999998764
No 115
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=94.77 E-value=1.3 Score=45.83 Aligned_cols=50 Identities=10% Similarity=-0.038 Sum_probs=26.9
Q ss_pred EEEEeCCCCeeEEeecCCCCCCCCceeEEEEE--CCeEEEeccccccccccccccccccCeeEEEECCCC
Q 007468 274 LWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (602)
Q Consensus 274 v~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~ 341 (602)
|.+||+.+..-...-.. .....+++.. ++.+++.+|..+ +.|.+||+.+.
T Consensus 303 I~iwd~~t~~~~~~~~~-----~~~v~~~~~~~~~~~lv~~sg~~d-------------~~I~iwd~~~~ 354 (420)
T 4gga_A 303 IRIWNVCSGACLSAVDA-----HSQVCSILWSPHYKELISGHGFAQ-------------NQLVIWKYPTM 354 (420)
T ss_dssp EEEEETTTTEEEEEEEC-----SSCEEEEEEETTTTEEEEEECTTT-------------CCEEEEETTTC
T ss_pred EEEEeCCccccceeecc-----ccceeeeeecCCCCeEEEEEecCC-------------CEEEEEECCCC
Confidence 77888877654443321 1112233333 455555555432 45889998764
No 116
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=94.76 E-value=0.86 Score=45.92 Aligned_cols=97 Identities=12% Similarity=0.110 Sum_probs=47.0
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCC-
Q 007468 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS- 178 (602)
Q Consensus 102 dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~- 178 (602)
.+|.+|+.+.++..+.... ...-.+ +++. +..||+.+...... ..-.+|.++..+...+.+.. .+.
T Consensus 30 ~~~~~d~~~g~~~~~~~~~--~~~p~~-l~~spdg~~l~~~~~~~~~~------~~v~~~~~~~~~g~~~~~~~--~~~~ 98 (361)
T 3scy_A 30 YTFRFNEETGESLPLSDAE--VANPSY-LIPSADGKFVYSVNEFSKDQ------AAVSAFAFDKEKGTLHLLNT--QKTM 98 (361)
T ss_dssp EEEEEETTTCCEEEEEEEE--CSCCCS-EEECTTSSEEEEEECCSSTT------CEEEEEEEETTTTEEEEEEE--EECS
T ss_pred EEEEEeCCCCCEEEeeccc--CCCCce-EEECCCCCEEEEEEccCCCC------CcEEEEEEeCCCCcEEEeeE--eccC
Confidence 4566788888887665321 111111 2222 34577766531110 01235666776677776654 221
Q ss_pred CCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCC
Q 007468 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (602)
Q Consensus 179 ~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t 218 (602)
...-+..+.-++.||+.... -..+.+|++.+
T Consensus 99 ~~~p~~~~~dg~~l~~~~~~---------~~~v~~~~~~~ 129 (361)
T 3scy_A 99 GADPCYLTTNGKNIVTANYS---------GGSITVFPIGQ 129 (361)
T ss_dssp SSCEEEEEECSSEEEEEETT---------TTEEEEEEBCT
T ss_pred CCCcEEEEECCCEEEEEECC---------CCEEEEEEeCC
Confidence 11222223333456655422 24677888764
No 117
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=94.72 E-value=0.51 Score=46.59 Aligned_cols=186 Identities=8% Similarity=-0.018 Sum_probs=84.7
Q ss_pred CcEEEEEcC-CCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECC--CCcEEEcccCC
Q 007468 101 GDLYRYDVE-KQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLK--TNQWEQLNLKG 175 (602)
Q Consensus 101 ~dv~~yd~~-~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~--t~~W~~~~~~~ 175 (602)
+.+++|++. +.++..+.... ....-+.++.. +..||+.+... ..+.+|++. +.++..+..
T Consensus 15 ~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~-----------~~v~~~~~~~~~~~~~~~~~-- 79 (343)
T 1ri6_A 15 QQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVSPDKRYLYVGVRPE-----------FRVLAYRIAPDDGALTFAAE-- 79 (343)
T ss_dssp TEEEEEEECTTSCEEEEEEEE--CSSCCCCEEECTTSSEEEEEETTT-----------TEEEEEEECTTTCCEEEEEE--
T ss_pred CeEEEEEECCCCcEEEeeeEe--cCCCCceEEECCCCCEEEEeecCC-----------CeEEEEEecCCCCceeeccc--
Confidence 467888874 44555433211 11122223332 34566655421 345666655 777776544
Q ss_pred CCCCCcccEEEEE-CC-EEEEEcCccCCCCCeeeeceEEEEECCCC-ceEEeccCCCCCCCCCccceeEEEe--CCEEEE
Q 007468 176 CPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQF-KWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFL 250 (602)
Q Consensus 176 ~p~~R~~h~~~~~-~~-~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~-~W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv 250 (602)
.+....-..++.. ++ .||+.+.. ...+.+||+... ....+.... ....-++++.. +..||+
T Consensus 80 ~~~~~~~~~~~~s~dg~~l~~~~~~---------~~~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~s~dg~~l~~ 145 (343)
T 1ri6_A 80 SALPGSLTHISTDHQGQFVFVGSYN---------AGNVSVTRLEDGLPVGVVDVVE-----GLDGCHSANISPDNRTLWV 145 (343)
T ss_dssp EECSSCCSEEEECTTSSEEEEEETT---------TTEEEEEEEETTEEEEEEEEEC-----CCTTBCCCEECTTSSEEEE
T ss_pred cccCCCCcEEEEcCCCCEEEEEecC---------CCeEEEEECCCCcccccccccc-----CCCCceEEEECCCCCEEEE
Confidence 2211122233332 34 46655432 135777777322 223333221 11112233333 446777
Q ss_pred EcCccCCCCCccCCCCCCceeeeEEEEeCCC-CeeEEee--cCCCCCCCCceeEEEEE-CC-eEEEeccccccccccccc
Q 007468 251 YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT-WEWSKVK--KIGMPPGPRAGFSMCVH-KK-RALLFGGVVDMEMKGDVI 325 (602)
Q Consensus 251 ~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t-~~W~~l~--~~g~~P~~R~~~s~~~~-~~-~lyv~GG~~~~~~~~~~~ 325 (602)
.+.... .+++||+.+ .++..+. .... +....-..+++. ++ .||+.+..
T Consensus 146 ~~~~~~----------------~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~pdg~~l~~~~~~---------- 198 (343)
T 1ri6_A 146 PALKQD----------------RICLFTVSDDGHLVAQDPAEVTT-VEGAGPRHMVFHPNEQYAYCVNEL---------- 198 (343)
T ss_dssp EEGGGT----------------EEEEEEECTTSCEEEEEEEEEEC-STTCCEEEEEECTTSSEEEEEETT----------
T ss_pred ecCCCC----------------EEEEEEecCCCceeeeccccccc-CCCCCcceEEECCCCCEEEEEeCC----------
Confidence 653333 378888876 6665432 1111 111112233443 34 46665432
Q ss_pred cccccCeeEEEECC--CCceEEe
Q 007468 326 MSLFLNELYGFQLD--NHRWYPL 346 (602)
Q Consensus 326 ~~~~~ndv~~yd~~--t~~W~~l 346 (602)
-+.|.+|++. +..+..+
T Consensus 199 ----~~~i~~~~~~~~~g~~~~~ 217 (343)
T 1ri6_A 199 ----NSSVDVWELKDPHGNIECV 217 (343)
T ss_dssp ----TTEEEEEESSCTTSCCEEE
T ss_pred ----CCEEEEEEecCCCCcEEEE
Confidence 2458888884 4555443
No 118
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=94.67 E-value=2.8 Score=46.35 Aligned_cols=121 Identities=10% Similarity=0.074 Sum_probs=66.4
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEc-CCC--cEEEecCCCC---CCCce---eeEEEE--ECCE----EEEEeCccC
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDV-EKQ--EWKVISSPNS---PPPRS---AHQAVS--WKNY----LYIFGGEFT 145 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~-~~~--~W~~l~~~~~---P~~R~---~hs~~~--~~~~----iyV~GG~~~ 145 (602)
++.||+.+.. .+.|++||. .+. .|+.-..... |.+++ ..+.++ .++. ||+...
T Consensus 62 ~g~vyv~~~~---------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~--- 129 (599)
T 1w6s_A 62 DGKMYIHTSF---------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL--- 129 (599)
T ss_dssp TTEEEEECST---------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT---
T ss_pred CCEEEEEeCC---------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC---
Confidence 7888887651 247999999 766 5886433210 00111 122344 4666 776532
Q ss_pred CCCCCcceecCeEEEEECCCCc--EEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCc--e
Q 007468 146 SPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--W 221 (602)
Q Consensus 146 ~~~~~~~~~~~dv~~yd~~t~~--W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~--W 221 (602)
-..++.+|..+.+ |+.-.....+......+-++.++.||+-.+.... .....|+.||..+.+ |
T Consensus 130 ---------dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~----g~~g~v~A~D~~TG~~~W 196 (599)
T 1w6s_A 130 ---------DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAEL----GVRGYLTAYDVKTGEQVW 196 (599)
T ss_dssp ---------TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGG----TCCCEEEEEETTTCCEEE
T ss_pred ---------CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEeccccc----CCCCeEEEEECCCCcEEE
Confidence 1458899988874 8754321000001112235568888764432110 023579999998865 8
Q ss_pred EEecc
Q 007468 222 QEIKP 226 (602)
Q Consensus 222 ~~v~~ 226 (602)
+.-..
T Consensus 197 ~~~~~ 201 (599)
T 1w6s_A 197 RAYAT 201 (599)
T ss_dssp EEESS
T ss_pred EEcCC
Confidence 76544
No 119
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=94.66 E-value=3.5 Score=46.11 Aligned_cols=197 Identities=11% Similarity=-0.070 Sum_probs=100.6
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCC-----CCcceecCeEEEEECCCCcEE--Eccc
Q 007468 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPN-----QERFHHYKDFWMLDLKTNQWE--QLNL 173 (602)
Q Consensus 102 dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~-----~~~~~~~~dv~~yd~~t~~W~--~~~~ 173 (602)
.|+++|+.+++........ .. ....+.. +++.++++....... .........+|++++.+.... .+..
T Consensus 152 ~i~v~d~~tg~~~~~~~~~---~~-~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~ 227 (710)
T 2xdw_A 152 TIKFMKVDGAKELPDVLER---VK-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAE 227 (710)
T ss_dssp EEEEEETTTTEEEEEEEEE---EC-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEEC
T ss_pred EEEEEECCCCCCCcccccC---cc-cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEec
Confidence 7999999999887653211 11 1122222 444333433222100 000112356999999887632 2211
Q ss_pred CCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCC------C--ceEEeccCCCCCCCCCccceeEEEe
Q 007468 174 KGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ------F--KWQEIKPRFGSMWPSPRSGFQFFVY 244 (602)
Q Consensus 174 ~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t------~--~W~~v~~~~~~~~P~~R~~~~~~~~ 244 (602)
....+......... +++.+++....... ..+.++.+|+.+ . .+..+.... ... .......
T Consensus 228 -~~~~~~~~~~~~~SpDg~~l~~~~~~~~~----~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~-----~~~-~~~~s~d 296 (710)
T 2xdw_A 228 -FPDEPKWMGGAELSDDGRYVLLSIREGCD----PVNRLWYCDLQQESNGITGILKWVKLIDNF-----EGE-YDYVTNE 296 (710)
T ss_dssp -CTTCTTCEEEEEECTTSCEEEEEEECSSS----SCCEEEEEEGGGSSSSSCSSCCCEEEECSS-----SSC-EEEEEEE
T ss_pred -cCCCCeEEEEEEEcCCCCEEEEEEEccCC----CccEEEEEECcccccccCCccceEEeeCCC-----CcE-EEEEecc
Confidence 01112222222222 44433443321110 146899999876 4 587776541 111 1223334
Q ss_pred CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCC---eeEEeecCCCCCCC-CceeEEEEE-CCeEEEeccccccc
Q 007468 245 QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW---EWSKVKKIGMPPGP-RAGFSMCVH-KKRALLFGGVVDME 319 (602)
Q Consensus 245 ~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~---~W~~l~~~g~~P~~-R~~~s~~~~-~~~lyv~GG~~~~~ 319 (602)
++.||+.+..... ...++++|+.+. .|+.+.+. .. ..-.+++.. +++|++......
T Consensus 297 g~~l~~~s~~~~~-------------~~~l~~~d~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~lv~~~~~~g-- 357 (710)
T 2xdw_A 297 GTVFTFKTNRHSP-------------NYRLINIDFTDPEESKWKVLVPE----HEKDVLEWVACVRSNFLVLCYLHDV-- 357 (710)
T ss_dssp TTEEEEEECTTCT-------------TCEEEEEETTSCCGGGCEEEECC----CSSCEEEEEEEETTTEEEEEEEETT--
T ss_pred CCEEEEEECCCCC-------------CCEEEEEeCCCCCcccceeccCC----CCCCeEEEEEEEcCCEEEEEEEECC--
Confidence 7888888754321 245889998765 58888642 22 233345555 677776654432
Q ss_pred cccccccccccCeeEEEECCCCc
Q 007468 320 MKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 320 ~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
...|+++++.+..
T Consensus 358 ----------~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 358 ----------KNTLQLHDLATGA 370 (710)
T ss_dssp ----------EEEEEEEETTTCC
T ss_pred ----------EEEEEEEECCCCC
Confidence 3568899885543
No 120
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=94.62 E-value=0.95 Score=46.42 Aligned_cols=152 Identities=11% Similarity=-0.024 Sum_probs=77.2
Q ss_pred EEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEE
Q 007468 136 YLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYV 213 (602)
Q Consensus 136 ~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~ 213 (602)
.+++.|+.+ ..+.+||+.+.+....-. .........++.+ ++.+++.|+.+ ..+.+
T Consensus 145 ~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~i 202 (402)
T 2aq5_A 145 NVLLSAGCD-----------NVILVWDVGTGAAVLTLG--PDVHPDTIYSVDWSRDGALICTSCRD---------KRVRV 202 (402)
T ss_dssp TEEEEEETT-----------SCEEEEETTTTEEEEEEC--TTTCCSCEEEEEECTTSSCEEEEETT---------SEEEE
T ss_pred CEEEEEcCC-----------CEEEEEECCCCCccEEEe--cCCCCCceEEEEECCCCCEEEEEecC---------CcEEE
Confidence 467777643 358899998886543321 0011111223333 56667777643 46899
Q ss_pred EECCCCceEEec-cCCCCCCCCCccceeEEEe-CCEEEEEc---CccCCCCCccCCCCCCceeeeEEEEeCCCCee--EE
Q 007468 214 FDLDQFKWQEIK-PRFGSMWPSPRSGFQFFVY-QDEVFLYG---GYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW--SK 286 (602)
Q Consensus 214 yd~~t~~W~~v~-~~~~~~~P~~R~~~~~~~~-~~~Iyv~G---G~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W--~~ 286 (602)
||+.+..-...- ... ...+. ..++.. ++.+++.| +.+ ..+.+||+.+..- ..
T Consensus 203 wd~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~l~~g~~~~~d----------------~~i~iwd~~~~~~~~~~ 261 (402)
T 2aq5_A 203 IEPRKGTVVAEKDRPH----EGTRP-VHAVFVSEGKILTTGFSRMSE----------------RQVALWDTKHLEEPLSL 261 (402)
T ss_dssp EETTTTEEEEEEECSS----CSSSC-CEEEECSTTEEEEEEECTTCC----------------EEEEEEETTBCSSCSEE
T ss_pred EeCCCCceeeeeccCC----CCCcc-eEEEEcCCCcEEEEeccCCCC----------------ceEEEEcCccccCCceE
Confidence 999886543322 110 11111 222333 77777776 333 3488888765431 11
Q ss_pred eecCCCCCCCCceeEEEEE--CCeEEEeccccccccccccccccccCeeEEEECCCCc--eEEeEe
Q 007468 287 VKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR--WYPLEL 348 (602)
Q Consensus 287 l~~~g~~P~~R~~~s~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~--W~~l~~ 348 (602)
... +....-.++++. +..|++.|+.. ..|.+||+.+.. ...+..
T Consensus 262 ~~~----~~~~~v~~~~~s~~~~~l~~~g~~d--------------g~i~i~d~~~~~~~~~~l~~ 309 (402)
T 2aq5_A 262 QEL----DTSSGVLLPFFDPDTNIVYLCGKGD--------------SSIRYFEITSEAPFLHYLSM 309 (402)
T ss_dssp EEC----CCCSSCEEEEEETTTTEEEEEETTC--------------SCEEEEEECSSTTCEEEEEE
T ss_pred Eec----cCCCceeEEEEcCCCCEEEEEEcCC--------------CeEEEEEecCCCcceEeecc
Confidence 111 111122334444 34455666543 358899988776 444443
No 121
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=94.61 E-value=2 Score=41.91 Aligned_cols=200 Identities=12% Similarity=0.072 Sum_probs=98.1
Q ss_pred eEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCC--CCCceeeEEEEECCEEEEE----eCccC
Q 007468 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNS--PPPRSAHQAVSWKNYLYIF----GGEFT 145 (602)
Q Consensus 72 ~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~--P~~R~~hs~~~~~~~iyV~----GG~~~ 145 (602)
+++++.+ +++||+... + ...|++||+.+++...+..... +..+....++.-++.||+. |....
T Consensus 72 ~~l~~~~--dg~l~v~~~----~-----~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~ 140 (296)
T 3e5z_A 72 NGHCLNK--QGHLIACSH----G-----LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKP 140 (296)
T ss_dssp EEEEECT--TCCEEEEET----T-----TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCG
T ss_pred ceeeECC--CCcEEEEec----C-----CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccc
Confidence 3444444 567776543 1 1468999998888876643210 1111112222225788886 43110
Q ss_pred CC--CCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECC-CCce
Q 007468 146 SP--NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLD-QFKW 221 (602)
Q Consensus 146 ~~--~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~-t~~W 221 (602)
.. ..........+|+|++. .+...+... . ..-.+++.. ++++++.... .+.+++|++. +...
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~-~---~~~~gi~~s~dg~~lv~~~~---------~~~i~~~~~~~~g~~ 206 (296)
T 3e5z_A 141 EEGYGGEMELPGRWVFRLAPD-GTLSAPIRD-R---VKPNGLAFLPSGNLLVSDTG---------DNATHRYCLNARGET 206 (296)
T ss_dssp GGSSCCCCCSSSCEEEEECTT-SCEEEEECC-C---SSEEEEEECTTSCEEEEETT---------TTEEEEEEECSSSCE
T ss_pred cccccccccCCCcEEEEECCC-CCEEEeecC-C---CCCccEEECCCCCEEEEeCC---------CCeEEEEEECCCCcC
Confidence 00 00000013579999987 555544321 1 111233332 4555544332 2578899886 4554
Q ss_pred -E--EeccCCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCC
Q 007468 222 -Q--EIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR 297 (602)
Q Consensus 222 -~--~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R 297 (602)
. .+-.. .. ..|+ ++++. ++.|||.. .. .|++|++.......+.. |..
T Consensus 207 ~~~~~~~~~-~~--~~p~---~i~~d~~G~l~v~~--~~----------------~v~~~~~~g~~~~~~~~----~~~- 257 (296)
T 3e5z_A 207 EYQGVHFTV-EP--GKTD---GLRVDAGGLIWASA--GD----------------GVHVLTPDGDELGRVLT----PQT- 257 (296)
T ss_dssp EEEEEEECC-SS--SCCC---SEEEBTTSCEEEEE--TT----------------EEEEECTTSCEEEEEEC----SSC-
T ss_pred cCCCeEeeC-CC--CCCC---eEEECCCCCEEEEc--CC----------------eEEEECCCCCEEEEEEC----CCC-
Confidence 2 22111 00 1121 23443 77888876 22 28899998665555542 221
Q ss_pred ceeEEEEE--C-CeEEEeccccccccccccccccccCeeEEEECCCCc
Q 007468 298 AGFSMCVH--K-KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 298 ~~~s~~~~--~-~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
-.++++. + +.||+... +.+|+|++.+.+
T Consensus 258 -~~~~~f~~~d~~~L~v~t~----------------~~l~~~~~~~~~ 288 (296)
T 3e5z_A 258 -TSNLCFGGPEGRTLYMTVS----------------TEFWSIETNVRG 288 (296)
T ss_dssp -CCEEEEESTTSCEEEEEET----------------TEEEEEECSCCB
T ss_pred -ceeEEEECCCCCEEEEEcC----------------CeEEEEEccccc
Confidence 2233332 2 34666432 348999987764
No 122
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=94.58 E-value=1.2 Score=43.82 Aligned_cols=200 Identities=7% Similarity=0.001 Sum_probs=99.7
Q ss_pred EEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcE--EEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCC
Q 007468 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW--KVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPN 148 (602)
Q Consensus 73 s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W--~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~ 148 (602)
.+++.|. +..||+.+.. .+.+++||+.+.+. ..+.... .++ +++++. +..|| .+.....
T Consensus 44 ~~~~s~d-g~~l~~~~~~---------~~~i~~~d~~~~~~~~~~~~~~~--~~~--~~~~~s~dg~~l~-~~~~~~~-- 106 (331)
T 3u4y_A 44 DTAITSD-CSNVVVTSDF---------CQTLVQIETQLEPPKVVAIQEGQ--SSM--ADVDITPDDQFAV-TVTGLNH-- 106 (331)
T ss_dssp EEEECSS-SCEEEEEEST---------TCEEEEEECSSSSCEEEEEEECS--SCC--CCEEECTTSSEEE-ECCCSSS--
T ss_pred eEEEcCC-CCEEEEEeCC---------CCeEEEEECCCCceeEEecccCC--CCc--cceEECCCCCEEE-EecCCCC--
Confidence 4555552 2346666551 24789999988874 3333222 222 212332 44566 3322110
Q ss_pred CCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE-CC-EEEEEcCccCCCCCeeeece-EEEEECCCCc-eEEe
Q 007468 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYND-LYVFDLDQFK-WQEI 224 (602)
Q Consensus 149 ~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~~-~Lyv~GG~~~~~~~~~~~~~-v~~yd~~t~~-W~~v 224 (602)
...+++||+.+.+...... .....+.++.. ++ +||+.+... +. +.+|++.... ....
T Consensus 107 ------~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~spdg~~l~~~~~~~---------~~~i~~~~~~~~g~~~~~ 167 (331)
T 3u4y_A 107 ------PFNMQSYSFLKNKFISTIP----IPYDAVGIAISPNGNGLILIDRSS---------ANTVRRFKIDADGVLFDT 167 (331)
T ss_dssp ------SCEEEEEETTTTEEEEEEE----CCTTEEEEEECTTSSCEEEEEETT---------TTEEEEEEECTTCCEEEE
T ss_pred ------cccEEEEECCCCCeEEEEE----CCCCccceEECCCCCEEEEEecCC---------CceEEEEEECCCCcEeec
Confidence 1279999999887654432 12222444443 33 577765432 34 6666655422 1111
Q ss_pred --ccCCCCCCCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCee---EEeecCCCCCCCC
Q 007468 225 --KPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW---SKVKKIGMPPGPR 297 (602)
Q Consensus 225 --~~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W---~~l~~~g~~P~~R 297 (602)
... +....-..++.. +..||+.+.... .+.+||+.+.+. ...-+.+ .
T Consensus 168 ~~~~~-----~~~~~~~~~~~spdg~~l~v~~~~~~----------------~v~v~d~~~~~~~~~~~~~~~~-----~ 221 (331)
T 3u4y_A 168 GQEFI-----SGGTRPFNITFTPDGNFAFVANLIGN----------------SIGILETQNPENITLLNAVGTN-----N 221 (331)
T ss_dssp EEEEE-----CSSSSEEEEEECTTSSEEEEEETTTT----------------EEEEEECSSTTSCEEEEEEECS-----S
T ss_pred CCccc-----cCCCCccceEECCCCCEEEEEeCCCC----------------eEEEEECCCCcccceeeeccCC-----C
Confidence 111 111112333333 445887765433 388899887664 2222211 1
Q ss_pred ceeEEEEE-CCe-EEEeccccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 298 AGFSMCVH-KKR-ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 298 ~~~s~~~~-~~~-lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
.-..+++. +++ ||+.... -+.|++||+.+.+...+..
T Consensus 222 ~~~~~~~spdg~~l~v~~~~--------------~~~i~~~d~~~~~~~~~~~ 260 (331)
T 3u4y_A 222 LPGTIVVSRDGSTVYVLTES--------------TVDVFNFNQLSGTLSFVKS 260 (331)
T ss_dssp CCCCEEECTTSSEEEEECSS--------------EEEEEEEETTTTEEEEEEE
T ss_pred CCceEEECCCCCEEEEEEcC--------------CCEEEEEECCCCceeeecc
Confidence 12234444 344 6665442 2348999999988766554
No 123
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=94.45 E-value=3.7 Score=40.95 Aligned_cols=188 Identities=13% Similarity=0.061 Sum_probs=93.6
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv 158 (602)
++.+++.|+. -..|.+||..+..-...-.. ......++.+ ++.+++.||.. ..+
T Consensus 66 d~~~l~s~s~---------Dg~v~iWd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~d-----------~~v 121 (340)
T 1got_B 66 DSRLLLSASQ---------DGKLIIWDSYTTNKVHAIPL----RSSWVMTCAYAPSGNYVACGGLD-----------NIC 121 (340)
T ss_dssp TSSEEEEEET---------TTEEEEEETTTCCEEEEEEC----SSSCEEEEEECTTSSEEEEEETT-----------CEE
T ss_pred CCCEEEEEeC---------CCcEEEEECCCCCcceEeec----CCccEEEEEECCCCCEEEEEeCC-----------CeE
Confidence 5677777772 23688889877654322111 1111222233 45666777653 346
Q ss_pred EEEECCCCc--EEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCc
Q 007468 159 WMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR 236 (602)
Q Consensus 159 ~~yd~~t~~--W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R 236 (602)
.+|++.+.. ....................-++. ++.|+.+ ..+.+||+.+..-...-.. ...
T Consensus 122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d---------~~i~~wd~~~~~~~~~~~~------h~~ 185 (340)
T 1got_B 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGD---------TTCALWDIETGQQTTTFTG------HTG 185 (340)
T ss_dssp EEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETT---------SCEEEEETTTTEEEEEECC------CSS
T ss_pred EEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECC---------CcEEEEECCCCcEEEEEcC------CCC
Confidence 778876642 111111000111111111122455 4445432 4588899887654322111 111
Q ss_pred cceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEecc
Q 007468 237 SGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGG 314 (602)
Q Consensus 237 ~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~GG 314 (602)
.-.+++.. ++.+++.|+.++. +.+||+.+..-...-. + ....-.++++. ++.+++.|+
T Consensus 186 ~v~~~~~~~~~~~l~sg~~d~~----------------v~~wd~~~~~~~~~~~-~---h~~~v~~v~~~p~~~~l~s~s 245 (340)
T 1got_B 186 DVMSLSLAPDTRLFVSGACDAS----------------AKLWDVREGMCRQTFT-G---HESDINAICFFPNGNAFATGS 245 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSC----------------EEEEETTTCSEEEEEC-C---CSSCEEEEEECTTSSEEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCc----------------EEEEECCCCeeEEEEc-C---CcCCEEEEEEcCCCCEEEEEc
Confidence 11223333 6778888887766 7788887654322211 1 11122233343 567777777
Q ss_pred ccccccccccccccccCeeEEEECCCCc
Q 007468 315 VVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
.+ ..|.+||+.+..
T Consensus 246 ~d--------------~~v~iwd~~~~~ 259 (340)
T 1got_B 246 DD--------------ATCRLFDLRADQ 259 (340)
T ss_dssp TT--------------SCEEEEETTTTE
T ss_pred CC--------------CcEEEEECCCCc
Confidence 54 348888987754
No 124
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=94.41 E-value=3.1 Score=40.71 Aligned_cols=102 Identities=15% Similarity=0.061 Sum_probs=54.7
Q ss_pred EEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCc
Q 007468 191 KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGI 269 (602)
Q Consensus 191 ~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~ 269 (602)
.+++.||.+ ..+.+||+.+......-.. ....-.+++.. ++.+++.|+.++.
T Consensus 186 ~~~~s~~~d---------~~i~i~d~~~~~~~~~~~~------h~~~v~~~~~s~~~~~l~s~s~Dg~------------ 238 (340)
T 4aow_A 186 PIIVSCGWD---------KLVKVWNLANCKLKTNHIG------HTGYLNTVTVSPDGSLCASGGKDGQ------------ 238 (340)
T ss_dssp CEEEEEETT---------SCEEEEETTTTEEEEEECC------CSSCEEEEEECTTSSEEEEEETTCE------------
T ss_pred cEEEEEcCC---------CEEEEEECCCCceeeEecC------CCCcEEEEEECCCCCEEEEEeCCCe------------
Confidence 455666643 3578889887654332221 11111222332 6677888887655
Q ss_pred eeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCCc
Q 007468 270 IHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 270 ~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
+.+||+.+..-...-.. ...-.+++...+..++.++.. +.|.+||+.+..
T Consensus 239 ----i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~d--------------~~i~iwd~~~~~ 288 (340)
T 4aow_A 239 ----AMLWDLNEGKHLYTLDG-----GDIINALCFSPNRYWLCAATG--------------PSIKIWDLEGKI 288 (340)
T ss_dssp ----EEEEETTTTEEEEEEEC-----SSCEEEEEECSSSSEEEEEET--------------TEEEEEETTTTE
T ss_pred ----EEEEEeccCceeeeecC-----CceEEeeecCCCCceeeccCC--------------CEEEEEECCCCe
Confidence 77888876543332221 112234444455556666643 358888887654
No 125
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=94.37 E-value=4 Score=39.56 Aligned_cols=111 Identities=12% Similarity=0.141 Sum_probs=55.1
Q ss_pred EEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCC--cEEEecCCCCCCCceeeEEEEE-C---CEEEEEeCccCCC
Q 007468 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSW-K---NYLYIFGGEFTSP 147 (602)
Q Consensus 74 ~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~--~W~~l~~~~~P~~R~~hs~~~~-~---~~iyV~GG~~~~~ 147 (602)
+.+.| ++.+++.|+. -..|.+||..+. .+..+.... .....-.++.+ . +.+++.|+.+
T Consensus 17 ~~~~~--~~~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~d~~~l~s~~~d--- 80 (351)
T 3f3f_A 17 VVYDF--YGRHVATCSS---------DQHIKVFKLDKDTSNWELSDSWR--AHDSSIVAIDWASPEYGRIIASASYD--- 80 (351)
T ss_dssp EEECS--SSSEEEEEET---------TSEEEEEEECSSSCCEEEEEEEE--CCSSCEEEEEECCGGGCSEEEEEETT---
T ss_pred EEEcC--CCCEEEEeeC---------CCeEEEEECCCCCCcceecceec--cCCCcEEEEEEcCCCCCCEEEEEcCC---
Confidence 34444 5667777762 236777887744 344332211 11111222333 2 5677777753
Q ss_pred CCCcceecCeEEEEECCCC-------cEEEcccCCCCCCCcccEEEEE--C--CEEEEEcCccCCCCCeeeeceEEEEEC
Q 007468 148 NQERFHHYKDFWMLDLKTN-------QWEQLNLKGCPSPRSGHRMVLY--K--HKIIVFGGFYDTLREVRYYNDLYVFDL 216 (602)
Q Consensus 148 ~~~~~~~~~dv~~yd~~t~-------~W~~~~~~~~p~~R~~h~~~~~--~--~~Lyv~GG~~~~~~~~~~~~~v~~yd~ 216 (602)
..+.+||+.+. .|..+.. .........++.+ + +.+++.|+.+ ..+.+||+
T Consensus 81 --------g~v~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~d---------g~v~iwd~ 141 (351)
T 3f3f_A 81 --------KTVKLWEEDPDQEECSGRRWNKLCT--LNDSKGSLYSVKFAPAHLGLKLACLGND---------GILRLYDA 141 (351)
T ss_dssp --------SCEEEEEECTTSCTTSSCSEEEEEE--ECCCSSCEEEEEECCGGGCSEEEEEETT---------CEEEEEEC
T ss_pred --------CeEEEEecCCCcccccccCcceeee--ecccCCceeEEEEcCCCCCcEEEEecCC---------CcEEEecC
Confidence 24667777654 3443332 1111122222333 3 6677777653 46788887
Q ss_pred CCC
Q 007468 217 DQF 219 (602)
Q Consensus 217 ~t~ 219 (602)
.+.
T Consensus 142 ~~~ 144 (351)
T 3f3f_A 142 LEP 144 (351)
T ss_dssp SST
T ss_pred CCh
Confidence 654
No 126
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=94.37 E-value=2.5 Score=41.17 Aligned_cols=204 Identities=9% Similarity=0.088 Sum_probs=97.3
Q ss_pred eEEEEecCCC-CEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEe-cCCCCCCC-ceeeEEEEE-CCEEEEEeCccCCC
Q 007468 72 CSLNINPLKE-TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVI-SSPNSPPP-RSAHQAVSW-KNYLYIFGGEFTSP 147 (602)
Q Consensus 72 ~s~~~~~~~~-~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l-~~~~~P~~-R~~hs~~~~-~~~iyV~GG~~~~~ 147 (602)
+++++.+ + ++|||.... +.|++||+. ++...+ .......+ ..-+.++.. ++.||+........
T Consensus 74 ~~i~~~~--~~g~l~v~~~~----------~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~ 140 (314)
T 1pjx_A 74 AGCQCDR--DANQLFVADMR----------LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVA 140 (314)
T ss_dssp EEEEECS--SSSEEEEEETT----------TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCT
T ss_pred ceEEEec--CCCcEEEEECC----------CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccc
Confidence 3444443 4 678876541 268999998 777765 32111111 112233332 57788765432100
Q ss_pred ----CCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE-----CC-EEEEEcCccCCCCCeeeeceEEEEECC
Q 007468 148 ----NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-----KH-KIIVFGGFYDTLREVRYYNDLYVFDLD 217 (602)
Q Consensus 148 ----~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-----~~-~Lyv~GG~~~~~~~~~~~~~v~~yd~~ 217 (602)
..........+++|++. .+...+... ... .+..+.. ++ .||+.... .+.+++|++.
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~-~~~---~~~i~~~~~~d~dg~~l~v~~~~---------~~~i~~~~~~ 206 (314)
T 1pjx_A 141 PADYTRSMQEKFGSIYCFTTD-GQMIQVDTA-FQF---PNGIAVRHMNDGRPYQLIVAETP---------TKKLWSYDIK 206 (314)
T ss_dssp TSCCCBTTSSSCEEEEEECTT-SCEEEEEEE-ESS---EEEEEEEECTTSCEEEEEEEETT---------TTEEEEEEEE
T ss_pred cccccccccCCCCeEEEECCC-CCEEEeccC-CCC---cceEEEecccCCCCCEEEEEECC---------CCeEEEEECC
Confidence 00000113578999987 655544221 111 1233333 23 57776432 2568888875
Q ss_pred -CCceEEe---ccCCCCCCCCC--ccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecC
Q 007468 218 -QFKWQEI---KPRFGSMWPSP--RSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (602)
Q Consensus 218 -t~~W~~v---~~~~~~~~P~~--R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~ 290 (602)
+..+... ... +.. ..-..+++. ++.|||...... .+.+||+.+.+....-..
T Consensus 207 ~~g~~~~~~~~~~~-----~~~~~~~p~~i~~d~~G~l~v~~~~~~----------------~i~~~d~~~g~~~~~~~~ 265 (314)
T 1pjx_A 207 GPAKIENKKVWGHI-----PGTHEGGADGMDFDEDNNLLVANWGSS----------------HIEVFGPDGGQPKMRIRC 265 (314)
T ss_dssp ETTEEEEEEEEEEC-----CCCSSCEEEEEEEBTTCCEEEEEETTT----------------EEEEECTTCBSCSEEEEC
T ss_pred CCCccccceEEEEC-----CCCCCCCCCceEECCCCCEEEEEcCCC----------------EEEEEcCCCCcEeEEEeC
Confidence 4443221 112 111 111233333 678888643222 388899875432221111
Q ss_pred CCCCCCCceeEEEEE-CCe-EEEeccccccccccccccccccCeeEEEECCCC
Q 007468 291 GMPPGPRAGFSMCVH-KKR-ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (602)
Q Consensus 291 g~~P~~R~~~s~~~~-~~~-lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~ 341 (602)
|. ..-.++++. +++ ||+.... .+.|++|++...
T Consensus 266 ---~~-~~~~~i~~~~dg~~l~v~~~~--------------~~~l~~~~~~~~ 300 (314)
T 1pjx_A 266 ---PF-EKPSNLHFKPQTKTIFVTEHE--------------NNAVWKFEWQRN 300 (314)
T ss_dssp ---SS-SCEEEEEECTTSSEEEEEETT--------------TTEEEEEECSSC
T ss_pred ---CC-CCceeEEECCCCCEEEEEeCC--------------CCeEEEEeCCCC
Confidence 21 222344443 444 6665432 146899988753
No 127
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=94.33 E-value=1.2 Score=45.06 Aligned_cols=145 Identities=12% Similarity=-0.025 Sum_probs=73.3
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE---CCEEEEEcCccCCCCCeeeece
Q 007468 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYND 210 (602)
Q Consensus 134 ~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~---~~~Lyv~GG~~~~~~~~~~~~~ 210 (602)
++.+++.|+.. ..+.++|+.+.+-...-. .... .-.++.+ +..+++.|+.+ ..
T Consensus 138 dg~~l~sgs~d-----------~~i~iwd~~~~~~~~~~~--~h~~--~V~~~~~~~~~~~~l~s~s~D---------~~ 193 (344)
T 4gqb_B 138 SGTQAVSGSKD-----------ICIKVWDLAQQVVLSSYR--AHAA--QVTCVAASPHKDSVFLSCSED---------NR 193 (344)
T ss_dssp TSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CCSS--CEEEEEECSSCTTEEEEEETT---------SC
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCcEEEEEc--CcCC--ceEEEEecCCCCCceeeeccc---------cc
Confidence 56677777653 347888998875432211 1111 1122222 33577777754 35
Q ss_pred EEEEECCCCceEEeccCCCCCCCCCcc-ceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeE-E
Q 007468 211 LYVFDLDQFKWQEIKPRFGSMWPSPRS-GFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS-K 286 (602)
Q Consensus 211 v~~yd~~t~~W~~v~~~~~~~~P~~R~-~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~-~ 286 (602)
|.+||+.+.+-...-.. ..... -.+++.. ++.+++.|+.++. |.+||+.+.+-. .
T Consensus 194 v~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~~l~sg~~dg~----------------v~~wd~~~~~~~~~ 252 (344)
T 4gqb_B 194 ILLWDTRCPKPASQIGC-----SAPGYLPTSLAWHPQQSEVFVFGDENGT----------------VSLVDTKSTSCVLS 252 (344)
T ss_dssp EEEEETTSSSCEEECC---------CCCEEEEEECSSCTTEEEEEETTSE----------------EEEEESCC--CCEE
T ss_pred cccccccccceeeeeec-----ceeeccceeeeecCCCCcceEEeccCCc----------------EEEEECCCCcEEEE
Confidence 78889887654332211 11111 1122222 5678888887655 778887654311 1
Q ss_pred eecCCCCCCCCceeEEEEE-C-CeEEEeccccccccccccccccccCeeEEEECCCCc
Q 007468 287 VKKIGMPPGPRAGFSMCVH-K-KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 287 l~~~g~~P~~R~~~s~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
+.. ....-.++++. + .++++.|+.+ ..|.+||..+.+
T Consensus 253 ~~~-----h~~~v~~v~fsp~g~~~lasgs~D--------------~~i~vwd~~~~~ 291 (344)
T 4gqb_B 253 SAV-----HSQCVTGLVFSPHSVPFLASLSED--------------CSLAVLDSSLSE 291 (344)
T ss_dssp EEC-----CSSCEEEEEECSSSSCCEEEEETT--------------SCEEEECTTCCE
T ss_pred EcC-----CCCCEEEEEEccCCCeEEEEEeCC--------------CeEEEEECCCCc
Confidence 111 11122233443 2 3566666653 348888887764
No 128
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=94.30 E-value=1.2 Score=44.81 Aligned_cols=146 Identities=8% Similarity=0.205 Sum_probs=73.1
Q ss_pred EEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCC
Q 007468 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (602)
Q Consensus 73 s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~ 150 (602)
++.+.| ++.+++.|+. -..+.+|+..+..+..+.... .......++.+ ++.+++.|+.+
T Consensus 66 ~~~~sp--~g~~l~s~s~---------D~~v~iw~~~~~~~~~~~~~~--~h~~~v~~v~~sp~~~~l~s~s~D------ 126 (345)
T 3fm0_A 66 KVAWSP--CGNYLASASF---------DATTCIWKKNQDDFECVTTLE--GHENEVKSVAWAPSGNLLATCSRD------ 126 (345)
T ss_dssp EEEECT--TSSEEEEEET---------TSCEEEEEECCC-EEEEEEEC--CCSSCEEEEEECTTSSEEEEEETT------
T ss_pred EEEECC--CCCEEEEEEC---------CCcEEEEEccCCCeEEEEEcc--CCCCCceEEEEeCCCCEEEEEECC------
Confidence 344444 5667777762 235677887777665443211 11111223333 46677777653
Q ss_pred cceecCeEEEEECCCC-cEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccC
Q 007468 151 RFHHYKDFWMLDLKTN-QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (602)
Q Consensus 151 ~~~~~~dv~~yd~~t~-~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~ 227 (602)
..+.+||+.+. .+..+.. +.........+.+ ++.+++.|+.+ ..+.+||..+..|..+...
T Consensus 127 -----~~v~iwd~~~~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~s~s~d---------~~i~~w~~~~~~~~~~~~~ 190 (345)
T 3fm0_A 127 -----KSVWVWEVDEEDEYECVSV--LNSHTQDVKHVVWHPSQELLASASYD---------DTVKLYREEEDDWVCCATL 190 (345)
T ss_dssp -----SCEEEEEECTTSCEEEEEE--ECCCCSCEEEEEECSSSSCEEEEETT---------SCEEEEEEETTEEEEEEEE
T ss_pred -----CeEEEEECCCCCCeEEEEE--ecCcCCCeEEEEECCCCCEEEEEeCC---------CcEEEEEecCCCEEEEEEe
Confidence 34677777654 2333222 1111111222333 55677777754 3577788888888765444
Q ss_pred CCCCCCCCccceeEEEe-CCEEEEEcCccCC
Q 007468 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (602)
Q Consensus 228 ~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~ 257 (602)
.. ....-.+++.. ++.+++.|+.++.
T Consensus 191 ~~----h~~~v~~l~~sp~g~~l~s~s~D~~ 217 (345)
T 3fm0_A 191 EG----HESTVWSLAFDPSGQRLASCSDDRT 217 (345)
T ss_dssp CC----CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred cC----CCCceEEEEECCCCCEEEEEeCCCe
Confidence 11 11111222222 6677777777655
No 129
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=94.22 E-value=8.8 Score=42.95 Aligned_cols=118 Identities=15% Similarity=0.165 Sum_probs=67.6
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCC--cEEEecCCCCC---CCc---eeeEEEEECCEEEEEeCccCCCCCCcc
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSP---PPR---SAHQAVSWKNYLYIFGGEFTSPNQERF 152 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~--~W~~l~~~~~P---~~R---~~hs~~~~~~~iyV~GG~~~~~~~~~~ 152 (602)
++.||+... .+.|+++|..++ .|+.-...... ..+ ...+.++.++.||+...
T Consensus 70 ~g~vyv~~~----------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~---------- 129 (689)
T 1yiq_A 70 DGVMYTTGP----------FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL---------- 129 (689)
T ss_dssp TTEEEEECG----------GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT----------
T ss_pred CCEEEEEcC----------CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc----------
Confidence 788888654 247999999877 48854321100 000 11234556888887642
Q ss_pred eecCeEEEEECCCC--cEEEccc-CCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCc--eEEe
Q 007468 153 HHYKDFWMLDLKTN--QWEQLNL-KGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEI 224 (602)
Q Consensus 153 ~~~~dv~~yd~~t~--~W~~~~~-~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~--W~~v 224 (602)
-..++.+|..|. .|+.-.. ..........+.++.++.+|+-.+..... ....|+.||..|.+ |+.-
T Consensus 130 --dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~----~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 130 --DGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFG----VRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp --TSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTC----CBCEEEEEETTTCCEEEEEE
T ss_pred --CCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccC----CCCEEEEEECCCCcEEEEec
Confidence 145889999887 4876542 10011112223356688888743321111 24579999999865 8865
No 130
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=94.22 E-value=2.5 Score=42.62 Aligned_cols=162 Identities=16% Similarity=0.069 Sum_probs=81.3
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE----CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW----KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC 176 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~----~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~ 176 (602)
..+.+||+.+.+....-... ... ..++.+ ++.+++.|+.+ ..+.+||+.+.+....-. .
T Consensus 176 ~~v~lwd~~~~~~~~~~~~h--~~~--v~~~~~~~~~~g~~l~sgs~D-----------g~v~~wd~~~~~~~~~~~--~ 238 (354)
T 2pbi_B 176 GTCALWDVESGQLLQSFHGH--GAD--VLCLDLAPSETGNTFVSGGCD-----------KKAMVWDMRSGQCVQAFE--T 238 (354)
T ss_dssp SEEEEEETTTCCEEEEEECC--SSC--EEEEEECCCSSCCEEEEEETT-----------SCEEEEETTTCCEEEEEC--C
T ss_pred CcEEEEeCCCCeEEEEEcCC--CCC--eEEEEEEeCCCCCEEEEEeCC-----------CeEEEEECCCCcEEEEec--C
Confidence 35778888877654321111 111 112222 24677777753 347889998876543221 1
Q ss_pred CCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEc
Q 007468 177 PSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYG 252 (602)
Q Consensus 177 p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~G 252 (602)
. ...-.++.+ ++.+++.|+.+ ..+..||+.+..-..+-.. .........+.+ ++.+++.|
T Consensus 239 h--~~~v~~v~~~p~~~~l~s~s~D---------~~v~lwd~~~~~~~~~~~~-----~~~~~~~~~~~~s~~g~~l~~g 302 (354)
T 2pbi_B 239 H--ESDVNSVRYYPSGDAFASGSDD---------ATCRLYDLRADREVAIYSK-----ESIIFGASSVDFSLSGRLLFAG 302 (354)
T ss_dssp C--SSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTTEEEEEECC-----TTCCSCEEEEEECTTSSEEEEE
T ss_pred C--CCCeEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCcEEEEEcC-----CCcccceeEEEEeCCCCEEEEE
Confidence 1 111222333 56677777754 3578889877643322221 111222223333 66777777
Q ss_pred CccCCCCCccCCCCCCceeeeEEEEeCCCCee-EEeecCCCCCCCCceeEEEEE-CCeEEEecccc
Q 007468 253 GYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW-SKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVV 316 (602)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W-~~l~~~g~~P~~R~~~s~~~~-~~~lyv~GG~~ 316 (602)
+.++. +.+||+.+..= ..+. + ....-.++++. ++++++.|+.+
T Consensus 303 ~~d~~----------------i~vwd~~~~~~~~~l~--~---h~~~v~~l~~spdg~~l~sgs~D 347 (354)
T 2pbi_B 303 YNDYT----------------INVWDVLKGSRVSILF--G---HENRVSTLRVSPDGTAFCSGSWD 347 (354)
T ss_dssp ETTSC----------------EEEEETTTCSEEEEEC--C---CSSCEEEEEECTTSSCEEEEETT
T ss_pred ECCCc----------------EEEEECCCCceEEEEE--C---CCCcEEEEEECCCCCEEEEEcCC
Confidence 76655 78888765432 1121 1 11112233333 56777777754
No 131
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=94.17 E-value=5.5 Score=40.41 Aligned_cols=175 Identities=12% Similarity=0.020 Sum_probs=82.8
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCce-eeEEEEE---CCEEEEEeCccCCCCCCcceecCeEEEEECCCCc--EEEcccC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRS-AHQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLK 174 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~-~hs~~~~---~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~--W~~~~~~ 174 (602)
..+.+||+.+..-...-....|.... ...++.+ ++.+++.|+.+ ..+.+||+.... -..+..
T Consensus 180 ~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D-----------~~v~~wd~~~~~~~~~~~~~- 247 (380)
T 3iz6_a 180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD-----------TTVRLWDLRITSRAVRTYHG- 247 (380)
T ss_dssp SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT-----------SCEEEEETTTTCCCCEEECC-
T ss_pred CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC-----------CeEEEEECCCCCcceEEECC-
Confidence 35788888887655432211111111 1112222 46778888754 347788875321 111111
Q ss_pred CCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCcc-ceeEEEe-CCEEEE
Q 007468 175 GCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS-GFQFFVY-QDEVFL 250 (602)
Q Consensus 175 ~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~-~~~~~~~-~~~Iyv 250 (602)
.... -.++.+ ++.+++.|+.+ ..+.+||+.+..-...-............ -.+++.. ++.+++
T Consensus 248 --h~~~--v~~v~~~p~~~~l~s~s~D---------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 314 (380)
T 3iz6_a 248 --HEGD--INSVKFFPDGQRFGTGSDD---------GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLF 314 (380)
T ss_dssp --CSSC--CCEEEECTTSSEEEEECSS---------SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEE
T ss_pred --cCCC--eEEEEEecCCCeEEEEcCC---------CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEE
Confidence 1111 112233 56777777764 35888898876543332221000000111 1122222 677777
Q ss_pred EcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEee-cCCCCCCCCceeEEEEE-CCeEEEeccccc
Q 007468 251 YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK-KIGMPPGPRAGFSMCVH-KKRALLFGGVVD 317 (602)
Q Consensus 251 ~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~-~~g~~P~~R~~~s~~~~-~~~lyv~GG~~~ 317 (602)
.|+.++. +.+||+.+..-.... ........+ -.++++. ++.+++.|+.++
T Consensus 315 ~g~~dg~----------------i~vwd~~~~~~~~~~~~~~~~h~~~-v~~l~~s~dg~~l~sgs~D~ 366 (380)
T 3iz6_a 315 AGYSNGD----------------CYVWDTLLAEMVLNLGTLQNSHEGR-ISCLGLSSDGSALCTGSWDK 366 (380)
T ss_dssp EECTTSC----------------EEEEETTTCCEEEEECCSCSSCCCC-CCEEEECSSSSEEEEECTTS
T ss_pred EEECCCC----------------EEEEECCCCceEEEEecccCCCCCc-eEEEEECCCCCEEEEeeCCC
Confidence 7877665 888998765433221 110001111 1223333 677888888653
No 132
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=94.17 E-value=4.2 Score=39.00 Aligned_cols=198 Identities=10% Similarity=-0.030 Sum_probs=108.9
Q ss_pred eEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCC
Q 007468 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (602)
Q Consensus 72 ~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~ 149 (602)
+.+++.+. ++.||+.-. ..+.|++|++....-..+.... ...-+.+++. ++.||+.-..
T Consensus 39 ~gi~~d~~-~~~ly~~d~---------~~~~I~~~~~~g~~~~~~~~~~---~~~p~~ia~d~~~~~lyv~d~~------ 99 (267)
T 1npe_A 39 IGLAFDCV-DKVVYWTDI---------SEPSIGRASLHGGEPTTIIRQD---LGSPEGIALDHLGRTIFWTDSQ------ 99 (267)
T ss_dssp EEEEEETT-TTEEEEEET---------TTTEEEEEESSSCCCEEEECTT---CCCEEEEEEETTTTEEEEEETT------
T ss_pred EEEEEecC-CCEEEEEEC---------CCCEEEEEecCCCCcEEEEECC---CCCccEEEEEecCCeEEEEECC------
Confidence 45555542 467888754 1257899999876544332211 1123444443 5789988542
Q ss_pred CcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccC
Q 007468 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (602)
Q Consensus 150 ~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~ 227 (602)
.+.+++|++....-..+...++. .-..+++. +++||+...... .+.++++++....-+.+...
T Consensus 100 -----~~~I~~~~~~g~~~~~~~~~~~~---~P~~i~vd~~~g~lyv~~~~~~-------~~~I~~~~~dg~~~~~~~~~ 164 (267)
T 1npe_A 100 -----LDRIEVAKMDGTQRRVLFDTGLV---NPRGIVTDPVRGNLYWTDWNRD-------NPKIETSHMDGTNRRILAQD 164 (267)
T ss_dssp -----TTEEEEEETTSCSCEEEECSSCS---SEEEEEEETTTTEEEEEECCSS-------SCEEEEEETTSCCCEEEECT
T ss_pred -----CCEEEEEEcCCCCEEEEEECCCC---CccEEEEeeCCCEEEEEECCCC-------CcEEEEEecCCCCcEEEEEC
Confidence 25688898876543333221111 12334443 688998753211 25788888865443333222
Q ss_pred CCCCCCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE
Q 007468 228 FGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (602)
Q Consensus 228 ~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~ 305 (602)
.. ..-.++++. ++.||+.-... +.|++|++....-..+...+ ..| +++++.
T Consensus 165 -----~~-~~P~gia~d~~~~~lyv~d~~~----------------~~I~~~~~~g~~~~~~~~~~--~~P---~gi~~d 217 (267)
T 1npe_A 165 -----NL-GLPNGLTFDAFSSQLCWVDAGT----------------HRAECLNPAQPGRRKVLEGL--QYP---FAVTSY 217 (267)
T ss_dssp -----TC-SCEEEEEEETTTTEEEEEETTT----------------TEEEEEETTEEEEEEEEECC--CSE---EEEEEE
T ss_pred -----CC-CCCcEEEEcCCCCEEEEEECCC----------------CEEEEEecCCCceEEEecCC--CCc---eEEEEe
Confidence 11 112234443 57899875443 34889998754333332211 122 456667
Q ss_pred CCeEEEeccccccccccccccccccCeeEEEECCCCceE
Q 007468 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (602)
Q Consensus 306 ~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~ 344 (602)
++.||+.-.. .+.|++||+.+.+-.
T Consensus 218 ~~~lyva~~~--------------~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 218 GKNLYYTDWK--------------TNSVIAMDLAISKEM 242 (267)
T ss_dssp TTEEEEEETT--------------TTEEEEEETTTTEEE
T ss_pred CCEEEEEECC--------------CCeEEEEeCCCCCce
Confidence 8899985432 356999999877554
No 133
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=94.17 E-value=0.4 Score=48.92 Aligned_cols=106 Identities=18% Similarity=0.089 Sum_probs=55.6
Q ss_pred CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCC
Q 007468 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSE 266 (602)
Q Consensus 189 ~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~ 266 (602)
++++++.|+.+ ..|.+||+.+..-...-.. .. ..-.+++.. ++.+++.||.++.
T Consensus 150 dg~~l~sgs~d---------g~v~iwd~~~~~~~~~~~~-----h~-~~v~~v~~s~~~~~~~~s~~~dg~--------- 205 (357)
T 4g56_B 150 DGTQAVSGGKD---------FSVKVWDLSQKAVLKSYNA-----HS-SEVNCVAACPGKDTIFLSCGEDGR--------- 205 (357)
T ss_dssp SSSEEEEEETT---------SCEEEEETTTTEEEEEECC-----CS-SCEEEEEECTTCSSCEEEEETTSC---------
T ss_pred CCCEEEEEeCC---------CeEEEEECCCCcEEEEEcC-----CC-CCEEEEEEccCCCceeeeeccCCc---------
Confidence 56677777754 3578889887654332111 11 111222222 4457788887665
Q ss_pred CCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE--CCeEEEeccccccccccccccccccCeeEEEECCCC
Q 007468 267 KGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (602)
Q Consensus 267 ~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~ 341 (602)
+.+||+.+..-...... ........++++. ++.+++.|+.+ ..|.+||+.+.
T Consensus 206 -------v~~wd~~~~~~~~~~~~--~~~~~~v~~v~~sp~~~~~la~g~~d--------------~~i~~wd~~~~ 259 (357)
T 4g56_B 206 -------ILLWDTRKPKPATRIDF--CASDTIPTSVTWHPEKDDTFACGDET--------------GNVSLVNIKNP 259 (357)
T ss_dssp -------EEECCTTSSSCBCBCCC--TTCCSCEEEEEECTTSTTEEEEEESS--------------SCEEEEESSCG
T ss_pred -------eEEEECCCCceeeeeee--ccccccccchhhhhcccceEEEeecc--------------cceeEEECCCC
Confidence 77788766543222111 0111112233333 45677777653 34788888764
No 134
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=94.14 E-value=1.7 Score=43.32 Aligned_cols=158 Identities=9% Similarity=0.113 Sum_probs=79.4
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCC--CcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeec
Q 007468 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT--NQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYN 209 (602)
Q Consensus 134 ~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t--~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~ 209 (602)
++.+++.|+.+ ..+.+||+.. ..+..+.. +......-.++.+ ++.+++.|+.+ .
T Consensus 118 ~g~~las~s~D-----------~~v~iwd~~~~~~~~~~~~~--~~~h~~~v~~v~~~p~~~~l~s~s~D---------~ 175 (330)
T 2hes_X 118 DGYYLATCSRD-----------KSVWIWETDESGEEYECISV--LQEHSQDVKHVIWHPSEALLASSSYD---------D 175 (330)
T ss_dssp TSCEEEEEETT-----------SCEEEEECCTTCCCCEEEEE--ECCCSSCEEEEEECSSSSEEEEEETT---------S
T ss_pred CCCEEEEEeCC-----------CEEEEEeccCCCCCeEEEEE--eccCCCceEEEEECCCCCEEEEEcCC---------C
Confidence 45666666653 3467788742 23433322 1111111222333 56677777764 3
Q ss_pred eEEEEECCCCceEEeccCCCCCCCCCccceeEEEe-C--CEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCC------
Q 007468 210 DLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-Q--DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR------ 280 (602)
Q Consensus 210 ~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~--~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~------ 280 (602)
.+.+||..+..|..+..... ....-.++... + +.+++.|+.++. +.+||+.
T Consensus 176 ~i~iW~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~l~s~s~D~~----------------v~iw~~~~~~~~~ 235 (330)
T 2hes_X 176 TVRIWKDYDDDWECVAVLNG----HEGTVWSSDFDKTEGVFRLCSGSDDST----------------VRVWKYMGDDEDD 235 (330)
T ss_dssp CEEEEEEETTEEEEEEEECC----CSSCEEEEEECCSSSSCEEEEEETTSC----------------EEEEEEEEECTTS
T ss_pred eEEEEECCCCCeeEEEEccC----CCCcEEEEEecCCCCeeEEEEEeCCCe----------------EEEEEecCCCccc
Confidence 56777777777766655421 11111122222 2 446667776654 4444432
Q ss_pred CCeeEEeecCCCCCCCCceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 281 TWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 281 t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
...|..+..... .....-.++++..+.+++.||.+ ..|.+|+..+..|..+..
T Consensus 236 ~~~~~~~~~~~~-~h~~~v~~v~~s~~~~l~s~~~d--------------g~v~iw~~~~~~~~~~~~ 288 (330)
T 2hes_X 236 QQEWVCEAILPD-VHKRQVYNVAWGFNGLIASVGAD--------------GVLAVYEEVDGEWKVFAK 288 (330)
T ss_dssp CEEEEEEEECCS-CCSSCEEEEEECTTSCEEEEETT--------------SCEEEEEEETTEEEEEEE
T ss_pred cceeEEeeeccc-ccccceEEEEEcCCCEEEEEeCC--------------CEEEEEEcCCCceEEEec
Confidence 234655543211 01222334444455566777754 348889988888876543
No 135
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=94.13 E-value=2.4 Score=41.48 Aligned_cols=148 Identities=13% Similarity=0.072 Sum_probs=72.4
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCc-eeeEEEEE-C-CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPR-SAHQAVSW-K-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP 177 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R-~~hs~~~~-~-~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p 177 (602)
+.|++||+.+.+...... .+... ..+.+++. + ..+|+.+.. ...+++||+.+.+-...-..+.+
T Consensus 11 ~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~v~~~~-----------~~~v~~~d~~~~~~~~~~~~~~~ 77 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVIT--IADAGPTPMVPMVAPGGRIAYATVNK-----------SESLVKIDLVTGETLGRIDLSTP 77 (337)
T ss_dssp TEEEEEETTTTEEEEEEE--CTTCTTCCCCEEECTTSSEEEEEETT-----------TTEEEEEETTTCCEEEEEECCBT
T ss_pred CeEEEEECCCCcEEEEEE--cCCCCCCccceEEcCCCCEEEEEeCC-----------CCeEEEEECCCCCeEeeEEcCCc
Confidence 578999998876553322 11110 11223332 3 478877643 24689999988765432111100
Q ss_pred C--CCcccEEEEE--CCEEEEEcCccCCCCCee--eeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe--CCEEE
Q 007468 178 S--PRSGHRMVLY--KHKIIVFGGFYDTLREVR--YYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVF 249 (602)
Q Consensus 178 ~--~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~--~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iy 249 (602)
. ...-+.++.. +++||+............ ....+++||+.+.+....-.. +..-+.++.. +..||
T Consensus 78 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-------~~~~~~~~~s~dg~~l~ 150 (337)
T 1pby_B 78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-------PRQITMLAWARDGSKLY 150 (337)
T ss_dssp TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-------CSSCCCEEECTTSSCEE
T ss_pred ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-------CCCcceeEECCCCCEEE
Confidence 0 0012233333 346776642110000000 136899999988765433222 1111223333 44576
Q ss_pred EEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe
Q 007468 250 LYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (602)
Q Consensus 250 v~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l 287 (602)
+.+ . .+++||+.+.+-...
T Consensus 151 ~~~---~----------------~i~~~d~~~~~~~~~ 169 (337)
T 1pby_B 151 GLG---R----------------DLHVMDPEAGTLVED 169 (337)
T ss_dssp EES---S----------------SEEEEETTTTEEEEE
T ss_pred EeC---C----------------eEEEEECCCCcEeee
Confidence 662 2 288999988765443
No 136
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=94.06 E-value=2.3 Score=46.62 Aligned_cols=106 Identities=12% Similarity=0.099 Sum_probs=62.0
Q ss_pred eceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeE
Q 007468 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (602)
Q Consensus 208 ~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (602)
...++.+|..+.....+... +.++.-|.+... +.++|+.... .+.|.++|+.+.+=.
T Consensus 319 ~g~v~~vd~~~~~~~~v~~i-----~~~~~~~d~~~~pdgr~~~va~~~----------------sn~V~ViD~~t~kl~ 377 (567)
T 1qks_A 319 TGKILLVDYTDLNNLKTTEI-----SAERFLHDGGLDGSHRYFITAANA----------------RNKLVVIDTKEGKLV 377 (567)
T ss_dssp TTEEEEEETTCSSEEEEEEE-----ECCSSEEEEEECTTSCEEEEEEGG----------------GTEEEEEETTTTEEE
T ss_pred CCeEEEEecCCCccceeeee-----eccccccCceECCCCCEEEEEeCC----------------CCeEEEEECCCCcEE
Confidence 46788889887665555544 445555555444 4445554332 244889999988655
Q ss_pred EeecC-CCCCCCCceeEEEEE--CCeEEEeccccccccccccccccccCeeEEEECCCCc-----eEEeEe
Q 007468 286 KVKKI-GMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR-----WYPLEL 348 (602)
Q Consensus 286 ~l~~~-g~~P~~R~~~s~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~-----W~~l~~ 348 (602)
..-+. |..|.|..+... +. .+.+|+.+-.. -+.|.++|..+.. |+.+..
T Consensus 378 ~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g-------------~~~Vsvid~~~~~~~~~~~kvv~~ 434 (567)
T 1qks_A 378 AIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMG-------------DDSVALIGTDPEGHPDNAWKILDS 434 (567)
T ss_dssp EEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSS-------------SSEEEEEECCTTTCTTTBTSEEEE
T ss_pred EEEeccCcCCCCccceee-ECCCCCcEEEeCCCC-------------CCeEEEecCCCCCCccccCEEEEE
Confidence 44444 555655444332 34 35677654221 1458888887633 877655
No 137
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=94.00 E-value=2.7 Score=41.25 Aligned_cols=143 Identities=9% Similarity=0.032 Sum_probs=70.0
Q ss_pred EEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 007468 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (602)
Q Consensus 73 s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~ 151 (602)
++.+.| ++.+++.|+. -..+.+||..+..-...-... .... .++... ++.+++.|+.+
T Consensus 18 ~~~fsp--~~~~l~s~~~---------dg~v~lWd~~~~~~~~~~~~~--~~~v-~~~~~~~~~~~l~s~s~d------- 76 (304)
T 2ynn_A 18 GIDFHP--TEPWVLTTLY---------SGRVELWNYETQVEVRSIQVT--ETPV-RAGKFIARKNWIIVGSDD------- 76 (304)
T ss_dssp EEEECS--SSSEEEEEET---------TSEEEEEETTTTEEEEEEECC--SSCE-EEEEEEGGGTEEEEEETT-------
T ss_pred EEEECC--CCCEEEEEcC---------CCcEEEEECCCCceeEEeecc--CCcE-EEEEEeCCCCEEEEECCC-------
Confidence 445555 6777777772 246788898877543221111 1111 122222 45566666642
Q ss_pred ceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCC
Q 007468 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGS 230 (602)
Q Consensus 152 ~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~ 230 (602)
..+.+||+.+.+-...-. .. ...-.+++.. ++.+++.|+.+ ..+..||+.+. |.......
T Consensus 77 ----~~i~vwd~~~~~~~~~~~--~h-~~~v~~~~~~~~~~~l~sgs~D---------~~v~lWd~~~~-~~~~~~~~-- 137 (304)
T 2ynn_A 77 ----FRIRVFNYNTGEKVVDFE--AH-PDYIRSIAVHPTKPYVLSGSDD---------LTVKLWNWENN-WALEQTFE-- 137 (304)
T ss_dssp ----SEEEEEETTTCCEEEEEE--CC-SSCEEEEEECSSSSEEEEEETT---------SCEEEEEGGGT-TEEEEEEC--
T ss_pred ----CEEEEEECCCCcEEEEEe--CC-CCcEEEEEEcCCCCEEEEECCC---------CeEEEEECCCC-cchhhhhc--
Confidence 357788988765322111 01 1111122222 45666777754 35777887654 22222220
Q ss_pred CCCCCccceeEEEe--CCEEEEEcCccCC
Q 007468 231 MWPSPRSGFQFFVY--QDEVFLYGGYSKE 257 (602)
Q Consensus 231 ~~P~~R~~~~~~~~--~~~Iyv~GG~~~~ 257 (602)
.....-.+++.. ++.+++.|+.++.
T Consensus 138 --~h~~~v~~v~~~p~~~~~l~sgs~D~~ 164 (304)
T 2ynn_A 138 --GHEHFVMCVAFNPKDPSTFASGCLDRT 164 (304)
T ss_dssp --CCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred --ccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence 111111222322 4567888887765
No 138
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=93.87 E-value=2.7 Score=41.53 Aligned_cols=181 Identities=10% Similarity=0.067 Sum_probs=83.2
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~ 159 (602)
++.+++.|+. -..|.+||+.+.+....-.. ...-.+++.. ++..+++++..... ....+.
T Consensus 85 ~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~~~~------~~g~i~ 145 (369)
T 3zwl_B 85 FTKYCVTGSA---------DYSIKLWDVSNGQCVATWKS----PVPVKRVEFSPCGNYFLAILDNVMK------NPGSIN 145 (369)
T ss_dssp TSSEEEEEET---------TTEEEEEETTTCCEEEEEEC----SSCEEEEEECTTSSEEEEEECCBTT------BCCEEE
T ss_pred CCCEEEEEeC---------CCeEEEEECCCCcEEEEeec----CCCeEEEEEccCCCEEEEecCCccC------CCCEEE
Confidence 4566666662 24688899887765543221 1111222222 34455555432111 124566
Q ss_pred EEECCCCc----EEEcccCCC-----CCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCC-CceEEeccC
Q 007468 160 MLDLKTNQ----WEQLNLKGC-----PSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQEIKPR 227 (602)
Q Consensus 160 ~yd~~t~~----W~~~~~~~~-----p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t-~~W~~v~~~ 227 (602)
+||+.+.. +........ ........++.+ ++.+++.|+.+ ..+.+||+.+ ..-...-..
T Consensus 146 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~ 216 (369)
T 3zwl_B 146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD---------GKISKYDVSNNYEYVDSIDL 216 (369)
T ss_dssp EEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT---------SEEEEEETTTTTEEEEEEEC
T ss_pred EEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC---------CEEEEEECCCCcEeEEEEec
Confidence 66665432 222211000 111112223333 45566666643 4688999987 332221111
Q ss_pred CCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-
Q 007468 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH- 305 (602)
Q Consensus 228 ~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~- 305 (602)
....-.+++.. ++.+++.|+.++. +.+||+.+......-.. .....++++.
T Consensus 217 ------~~~~v~~~~~~~~~~~l~~~~~d~~----------------i~v~d~~~~~~~~~~~~-----~~~~~~~~~~~ 269 (369)
T 3zwl_B 217 ------HEKSISDMQFSPDLTYFITSSRDTN----------------SFLVDVSTLQVLKKYET-----DCPLNTAVITP 269 (369)
T ss_dssp ------CSSCEEEEEECTTSSEEEEEETTSE----------------EEEEETTTCCEEEEEEC-----SSCEEEEEECS
T ss_pred ------CCCceeEEEECCCCCEEEEecCCce----------------EEEEECCCCceeeeecC-----CCCceeEEecC
Confidence 11111223333 6666777766544 88889877654443221 1112233333
Q ss_pred CCeEEEecccc
Q 007468 306 KKRALLFGGVV 316 (602)
Q Consensus 306 ~~~lyv~GG~~ 316 (602)
.+..+++|+..
T Consensus 270 ~~~~l~~~~~~ 280 (369)
T 3zwl_B 270 LKEFIILGGGQ 280 (369)
T ss_dssp SSSEEEEEECC
T ss_pred CCceEEEeecC
Confidence 55666666543
No 139
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=93.82 E-value=1.4 Score=43.33 Aligned_cols=135 Identities=11% Similarity=-0.003 Sum_probs=64.8
Q ss_pred eEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCC
Q 007468 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (602)
Q Consensus 157 dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~ 234 (602)
.+.+||+.+.+....-. .... .-.++.+ ++.+++.|+.+ ..+.+||+.+..- +.... .
T Consensus 196 ~i~i~d~~~~~~~~~~~--~h~~--~v~~~~~s~~~~~l~s~s~D---------g~i~iwd~~~~~~--~~~~~-----~ 255 (340)
T 4aow_A 196 LVKVWNLANCKLKTNHI--GHTG--YLNTVTVSPDGSLCASGGKD---------GQAMLWDLNEGKH--LYTLD-----G 255 (340)
T ss_dssp CEEEEETTTTEEEEEEC--CCSS--CEEEEEECTTSSEEEEEETT---------CEEEEEETTTTEE--EEEEE-----C
T ss_pred EEEEEECCCCceeeEec--CCCC--cEEEEEECCCCCEEEEEeCC---------CeEEEEEeccCce--eeeec-----C
Confidence 47788988776543321 1111 1122233 56777777754 3577888876543 22221 1
Q ss_pred CccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCC-----CCCceeEEEEE-CCe
Q 007468 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP-----GPRAGFSMCVH-KKR 308 (602)
Q Consensus 235 ~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P-----~~R~~~s~~~~-~~~ 308 (602)
...-.+++...+..++.++.++. +.+||+.+..-...-...... .+..-.++++. +++
T Consensus 256 ~~~v~~~~~~~~~~~~~~~~d~~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 319 (340)
T 4aow_A 256 GDIINALCFSPNRYWLCAATGPS----------------IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ 319 (340)
T ss_dssp SSCEEEEEECSSSSEEEEEETTE----------------EEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS
T ss_pred CceEEeeecCCCCceeeccCCCE----------------EEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC
Confidence 11112233334445556665443 677777665432221110000 01111223333 567
Q ss_pred EEEeccccccccccccccccccCeeEEEECCCC
Q 007468 309 ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (602)
Q Consensus 309 lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~ 341 (602)
+++.||.++ .|.+||+.++
T Consensus 320 ~l~sgs~Dg--------------~v~iW~~~tG 338 (340)
T 4aow_A 320 TLFAGYTDN--------------LVRVWQVTIG 338 (340)
T ss_dssp EEEEEETTS--------------CEEEEEEEC-
T ss_pred EEEEEeCCC--------------EEEEEeCCCc
Confidence 777777643 4888887764
No 140
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=93.79 E-value=6.9 Score=42.78 Aligned_cols=191 Identities=15% Similarity=0.118 Sum_probs=96.8
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEE-EecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCe
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKD 157 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~-~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~d 157 (602)
++.+||... ..+.|+++|+.+++-. .++. ...-|.+++. +.++|+.+. .+.
T Consensus 166 ~~~~~V~~~---------~~~~V~viD~~t~~v~~~i~~-----g~~p~~v~~SpDGr~lyv~~~------------dg~ 219 (567)
T 1qks_A 166 ENLFSVTLR---------DAGQIALIDGSTYEIKTVLDT-----GYAVHISRLSASGRYLFVIGR------------DGK 219 (567)
T ss_dssp GGEEEEEET---------TTTEEEEEETTTCCEEEEEEC-----SSCEEEEEECTTSCEEEEEET------------TSE
T ss_pred CceEEEEeC---------CCCeEEEEECCCCeEEEEEeC-----CCCccceEECCCCCEEEEEcC------------CCe
Confidence 456777654 2358999999988655 3432 2233444443 467887642 146
Q ss_pred EEEEECC--CCcE-EEcccCCCCCCCcccEEEEE-----CC-EEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCC
Q 007468 158 FWMLDLK--TNQW-EQLNLKGCPSPRSGHRMVLY-----KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (602)
Q Consensus 158 v~~yd~~--t~~W-~~~~~~~~p~~R~~h~~~~~-----~~-~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~ 228 (602)
+.+||+. +.+- ..++. ...-..+++. ++ ++|+..- ..+.+.+||..+.+=...-+..
T Consensus 220 V~viD~~~~t~~~v~~i~~-----G~~P~~ia~s~~~~pDGk~l~v~n~---------~~~~v~ViD~~t~~~~~~i~~~ 285 (567)
T 1qks_A 220 VNMIDLWMKEPTTVAEIKI-----GSEARSIETSKMEGWEDKYAIAGAY---------WPPQYVIMDGETLEPKKIQSTR 285 (567)
T ss_dssp EEEEETTSSSCCEEEEEEC-----CSEEEEEEECCSTTCTTTEEEEEEE---------ETTEEEEEETTTCCEEEEEECC
T ss_pred EEEEECCCCCCcEeEEEec-----CCCCceeEEccccCCCCCEEEEEEc---------cCCeEEEEECCCCcEEEEEecc
Confidence 8999995 4432 22222 2111233333 34 6776532 2367888998775432221110
Q ss_pred C------CCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEE
Q 007468 229 G------SMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM 302 (602)
Q Consensus 229 ~------~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~ 302 (602)
. ...|.+|.....+...+..+++-=. ....++.+|........+... +..+..|..
T Consensus 286 ~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~---------------~~g~v~~vd~~~~~~~~v~~i---~~~~~~~d~ 347 (567)
T 1qks_A 286 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVK---------------ETGKILLVDYTDLNNLKTTEI---SAERFLHDG 347 (567)
T ss_dssp EECTTTCCEESCCCEEEEEECSSSSEEEEEET---------------TTTEEEEEETTCSSEEEEEEE---ECCSSEEEE
T ss_pred ccccccccccCCCceEEEEEcCCCCEEEEEec---------------CCCeEEEEecCCCccceeeee---eccccccCc
Confidence 0 0012344433222223223332111 123478888776655444432 345566666
Q ss_pred EEE-CCeEEEeccccccccccccccccccCeeEEEECCCCc
Q 007468 303 CVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 303 ~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
.+. .++.+++.-. ..+.|.++|..+++
T Consensus 348 ~~~pdgr~~~va~~-------------~sn~V~ViD~~t~k 375 (567)
T 1qks_A 348 GLDGSHRYFITAAN-------------ARNKLVVIDTKEGK 375 (567)
T ss_dssp EECTTSCEEEEEEG-------------GGTEEEEEETTTTE
T ss_pred eECCCCCEEEEEeC-------------CCCeEEEEECCCCc
Confidence 555 3343333221 14679999998875
No 141
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=93.71 E-value=0.49 Score=53.75 Aligned_cols=199 Identities=11% Similarity=0.089 Sum_probs=99.7
Q ss_pred CEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--C--CEEEEEeCccCCCCCCcceecCe
Q 007468 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--K--NYLYIFGGEFTSPNQERFHHYKD 157 (602)
Q Consensus 82 ~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~--~~iyV~GG~~~~~~~~~~~~~~d 157 (602)
+.+++.|+. -..|.+||+.++.|..+.... .......++.+ + +.++++|+.. ..
T Consensus 67 ~~~l~s~s~---------Dg~I~vwd~~~~~~~~~~~~~--~h~~~V~~v~~sp~~~~~~l~sgs~d-----------g~ 124 (753)
T 3jro_A 67 GTILASCSY---------DGKVLIWKEENGRWSQIAVHA--VHSASVNSVQWAPHEYGPLLLVASSD-----------GK 124 (753)
T ss_dssp CSEEEEEET---------TSCEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETT-----------SE
T ss_pred CCEEEEEeC---------CCeEEEEECCCCccccccccc--CCCCCeEEEEECCCCCCCEEEEEeCC-----------Cc
Confidence 667777773 246889999999887654322 11222223333 2 5677777653 35
Q ss_pred EEEEECCCCcEEEcccCCCCCCCcccEEEEE---------------CCEEEEEcCccCCCCCeeeeceEEEEECCCC--c
Q 007468 158 FWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---------------KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--K 220 (602)
Q Consensus 158 v~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~---------------~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~--~ 220 (602)
+.+||+.+..-..... .......-.++.+ ++.+++.|+.+ ..|.+||+.+. .
T Consensus 125 I~vwdl~~~~~~~~~~--~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d---------g~I~iwd~~~~~~~ 193 (753)
T 3jro_A 125 VSVVEFKENGTTSPII--IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD---------NLVKIWKYNSDAQT 193 (753)
T ss_dssp EEEEECCSSSCCCCEE--EECCSSCEEEEEECCCC---------CGGGCCEEEEETT---------SCEEEEEEETTTTE
T ss_pred EEEEEeecCCCcceeE--eecCCCceEEEEecCcccccccccccCCCCCEEEEEECC---------CeEEEEeccCCccc
Confidence 7788877652111000 0000111112222 25666677654 34677776543 4
Q ss_pred eEEeccCCCCCCCCCccceeEEEe-C---CEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCe--eEEeecCCCCC
Q 007468 221 WQEIKPRFGSMWPSPRSGFQFFVY-Q---DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE--WSKVKKIGMPP 294 (602)
Q Consensus 221 W~~v~~~~~~~~P~~R~~~~~~~~-~---~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--W~~l~~~g~~P 294 (602)
+..+.... .....-.+++.. + +.+++.||.++. +.+||+.+.. +...... ...
T Consensus 194 ~~~~~~~~----~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~----------------I~iwd~~~~~~~~~~~~~~-~~~ 252 (753)
T 3jro_A 194 YVLESTLE----GHSDWVRDVAWSPTVLLRSYLASVSQDRT----------------CIIWTQDNEQGPWKKTLLK-EEK 252 (753)
T ss_dssp EEEEEEEC----CCSSCEEEEEECCCCSSSEEEEEEESSSC----------------EEEEEESSSSSCCBCCBSS-SSC
T ss_pred ceeeeeec----CCCCcEEEEEeccCCCCCCEEEEEecCCE----------------EEEecCCCCCCcceeEEec-cCC
Confidence 45444331 111112223333 4 788899888765 6677765532 2111110 001
Q ss_pred CCCceeEEEEE-CCeEEEeccccccccccccccccccCeeEEEECCC-CceEEeEe
Q 007468 295 GPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN-HRWYPLEL 348 (602)
Q Consensus 295 ~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t-~~W~~l~~ 348 (602)
....-.++++. ++.+++.||.++ .|.+|++.+ ..|..+..
T Consensus 253 ~~~~v~~l~~spdg~~l~s~s~Dg--------------~I~vwd~~~~~~~~~~~~ 294 (753)
T 3jro_A 253 FPDVLWRASWSLSGNVLALSGGDN--------------KVTLWKENLEGKWEPAGE 294 (753)
T ss_dssp CSSCCCCEEECTTTCCEEEECSSS--------------CEECCBCCSSSCCBCCCC
T ss_pred CCCceEEEEEcCCCCEEEEEcCCC--------------EEEEEecCCCCCcccccc
Confidence 11122233443 567777777643 478888773 46665543
No 142
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=93.69 E-value=2.8 Score=42.89 Aligned_cols=110 Identities=17% Similarity=0.178 Sum_probs=61.1
Q ss_pred EEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 007468 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (602)
Q Consensus 73 s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~ 151 (602)
++++.| ++++++.|+. -..|.+||+.+.+-...-... ...-.+++.. ++..++.|+.+
T Consensus 128 ~v~~s~--dg~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~h---~~~v~~~~~~p~~~~l~s~s~d------- 186 (393)
T 1erj_A 128 SVCFSP--DGKFLATGAE---------DRLIRIWDIENRKIVMILQGH---EQDIYSLDYFPSGDKLVSGSGD------- 186 (393)
T ss_dssp EEEECT--TSSEEEEEET---------TSCEEEEETTTTEEEEEECCC---SSCEEEEEECTTSSEEEEEETT-------
T ss_pred EEEECC--CCCEEEEEcC---------CCeEEEEECCCCcEEEEEccC---CCCEEEEEEcCCCCEEEEecCC-------
Confidence 444555 5777777773 247889999887655432221 1112223332 34555666542
Q ss_pred ceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE---CCEEEEEcCccCCCCCeeeeceEEEEECCCCce
Q 007468 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (602)
Q Consensus 152 ~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~---~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W 221 (602)
..+.+||+.+......-. .. ....++.+ ++.+++.|+.+ ..+.+||+.+..-
T Consensus 187 ----~~v~iwd~~~~~~~~~~~--~~---~~v~~~~~~~~~~~~l~~~s~d---------~~v~iwd~~~~~~ 241 (393)
T 1erj_A 187 ----RTVRIWDLRTGQCSLTLS--IE---DGVTTVAVSPGDGKYIAAGSLD---------RAVRVWDSETGFL 241 (393)
T ss_dssp ----SEEEEEETTTTEEEEEEE--CS---SCEEEEEECSTTCCEEEEEETT---------SCEEEEETTTCCE
T ss_pred ----CcEEEEECCCCeeEEEEE--cC---CCcEEEEEECCCCCEEEEEcCC---------CcEEEEECCCCcE
Confidence 357788998876543222 11 11222222 56777777764 3578889887653
No 143
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=93.67 E-value=4.1 Score=41.02 Aligned_cols=135 Identities=13% Similarity=0.014 Sum_probs=70.9
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCcccEEEEE----CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCC
Q 007468 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM 231 (602)
Q Consensus 156 ~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~----~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~ 231 (602)
..+.+||+.+.+....-. ..... -.++.+ ++.+++.|+.+ ..+..||+.+......-..
T Consensus 176 ~~v~lwd~~~~~~~~~~~--~h~~~--v~~~~~~~~~~g~~l~sgs~D---------g~v~~wd~~~~~~~~~~~~---- 238 (354)
T 2pbi_B 176 GTCALWDVESGQLLQSFH--GHGAD--VLCLDLAPSETGNTFVSGGCD---------KKAMVWDMRSGQCVQAFET---- 238 (354)
T ss_dssp SEEEEEETTTCCEEEEEE--CCSSC--EEEEEECCCSSCCEEEEEETT---------SCEEEEETTTCCEEEEECC----
T ss_pred CcEEEEeCCCCeEEEEEc--CCCCC--eEEEEEEeCCCCCEEEEEeCC---------CeEEEEECCCCcEEEEecC----
Confidence 357788988876433211 01111 112222 34677777764 3688899988765432221
Q ss_pred CCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCcee-EEEEE-CCe
Q 007468 232 WPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF-SMCVH-KKR 308 (602)
Q Consensus 232 ~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~-s~~~~-~~~ 308 (602)
....-.+++.. ++.+++.|+.++. +.+||+.+..-..+-.. ....... ++++. ++.
T Consensus 239 --h~~~v~~v~~~p~~~~l~s~s~D~~----------------v~lwd~~~~~~~~~~~~---~~~~~~~~~~~~s~~g~ 297 (354)
T 2pbi_B 239 --HESDVNSVRYYPSGDAFASGSDDAT----------------CRLYDLRADREVAIYSK---ESIIFGASSVDFSLSGR 297 (354)
T ss_dssp --CSSCEEEEEECTTSSEEEEEETTSC----------------EEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSS
T ss_pred --CCCCeEEEEEeCCCCEEEEEeCCCe----------------EEEEECCCCcEEEEEcC---CCcccceeEEEEeCCCC
Confidence 11111122222 5677888887766 77888877643322211 1112222 23333 567
Q ss_pred EEEeccccccccccccccccccCeeEEEECCCCc
Q 007468 309 ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 309 lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
+++.|+.. ..|.+||+.+..
T Consensus 298 ~l~~g~~d--------------~~i~vwd~~~~~ 317 (354)
T 2pbi_B 298 LLFAGYND--------------YTINVWDVLKGS 317 (354)
T ss_dssp EEEEEETT--------------SCEEEEETTTCS
T ss_pred EEEEEECC--------------CcEEEEECCCCc
Confidence 77777643 358899986653
No 144
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=93.61 E-value=4.4 Score=40.76 Aligned_cols=111 Identities=16% Similarity=0.141 Sum_probs=58.0
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCC
Q 007468 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (602)
Q Consensus 156 ~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~ 234 (602)
..++++|+.+.+-..+.. ...+..+....- +++.++|...... ......+|.+|+.+.....+... ..
T Consensus 168 ~~l~~~d~~~g~~~~l~~---~~~~~~~~~~sp~dg~~l~~~~~~~~---~~~~~~l~~~d~~~~~~~~l~~~-----~~ 236 (388)
T 3pe7_A 168 CRLMRVDLKTGESTVILQ---ENQWLGHPIYRPYDDSTVAFCHEGPH---DLVDARMWLINEDGTNMRKVKTH-----AE 236 (388)
T ss_dssp EEEEEEETTTCCEEEEEE---ESSCEEEEEEETTEEEEEEEEECSCT---TTSSCSEEEEETTSCCCEESCCC-----CT
T ss_pred ceEEEEECCCCceEEeec---CCccccccEECCCCCCEEEEEEecCC---CCCcceEEEEeCCCCceEEeeeC-----CC
Confidence 679999999987666643 112233333333 4554444332111 01245899999988776666443 21
Q ss_pred CccceeEEEe-CCE-EEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeec
Q 007468 235 PRSGFQFFVY-QDE-VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (602)
Q Consensus 235 ~R~~~~~~~~-~~~-Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 289 (602)
.......+.. +++ |++.. .... .....++++|+.+..-+.+..
T Consensus 237 ~~~~~~~~~spdg~~l~~~~-~~~~-----------~~~~~l~~~d~~~g~~~~l~~ 281 (388)
T 3pe7_A 237 GESCTHEFWVPDGSALVYVS-YLKG-----------SPDRFIYSADPETLENRQLTS 281 (388)
T ss_dssp TEEEEEEEECTTSSCEEEEE-EETT-----------CCCEEEEEECTTTCCEEEEEE
T ss_pred CcccccceECCCCCEEEEEe-cCCC-----------CCcceEEEEecCCCceEEEEc
Confidence 1111122222 444 43332 2211 122359999999887766644
No 145
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=93.54 E-value=2.2 Score=43.06 Aligned_cols=199 Identities=10% Similarity=0.006 Sum_probs=95.8
Q ss_pred EEEEEcceecCCCCceeeCcEEEEEcCCCc-------EEEecCCCCCCCceeeEEEEE-C----C---EEEEEeCccCCC
Q 007468 83 ELILYGGEFYNGNKTYVYGDLYRYDVEKQE-------WKVISSPNSPPPRSAHQAVSW-K----N---YLYIFGGEFTSP 147 (602)
Q Consensus 83 ~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~-------W~~l~~~~~P~~R~~hs~~~~-~----~---~iyV~GG~~~~~ 147 (602)
.+++.|+. -..|.+||+.+.. ...+.... . .-.+++.. + + .+++.|+..
T Consensus 27 ~~l~s~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~h~--~--~v~~~~~~~~~~~~g~~~~~l~s~~~d--- 90 (397)
T 1sq9_A 27 SFTVSCSG---------DGYLKVWDNKLLDNENPKDKSYSHFVHK--S--GLHHVDVLQAIERDAFELCLVATTSFS--- 90 (397)
T ss_dssp SEEEEEET---------TSEEEEEESBCCTTCCGGGGEEEEECCT--T--CEEEEEEEEEEETTTEEEEEEEEEETT---
T ss_pred CeEEEEcC---------CCEEEEEECCCcccccCCCcceEEecCC--C--cEEEEEEecccccCCccccEEEEEcCC---
Confidence 57777762 2478889988776 44443211 1 11222222 3 5 777777653
Q ss_pred CCCcceecCeEEEEECCCCc------EEEcccCCCCC-CCcccEEEEE-----CCEE-EEEcCccCCCCCeeeeceEEEE
Q 007468 148 NQERFHHYKDFWMLDLKTNQ------WEQLNLKGCPS-PRSGHRMVLY-----KHKI-IVFGGFYDTLREVRYYNDLYVF 214 (602)
Q Consensus 148 ~~~~~~~~~dv~~yd~~t~~------W~~~~~~~~p~-~R~~h~~~~~-----~~~L-yv~GG~~~~~~~~~~~~~v~~y 214 (602)
..+.+||+.+.. +..+....... ...-.+++.. ++.+ ++.|+.+ ..+.+|
T Consensus 91 --------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d---------g~i~iw 153 (397)
T 1sq9_A 91 --------GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK---------GTTYIW 153 (397)
T ss_dssp --------SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT---------SCEEEE
T ss_pred --------CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC---------CcEEEE
Confidence 347777777665 66654411000 0112233333 3555 7777653 356677
Q ss_pred ECCC------Cc---eE---EeccCCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCC
Q 007468 215 DLDQ------FK---WQ---EIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT 281 (602)
Q Consensus 215 d~~t------~~---W~---~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t 281 (602)
|+.+ .. |. .+.............-.+++.. ++ +++.|+.++. +.+||+.+
T Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~----------------i~i~d~~~ 216 (397)
T 1sq9_A 154 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGT----------------VQISELST 216 (397)
T ss_dssp EEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSE----------------EEEEETTT
T ss_pred eCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCc----------------EEEEECCC
Confidence 7655 21 11 1110000000111112233333 56 7777776654 88899887
Q ss_pred CeeEEeecC--CCCCCCCceeEEEEE-CCeEEEeccccccccccccccccccCeeEEEECCCCc
Q 007468 282 WEWSKVKKI--GMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 282 ~~W~~l~~~--g~~P~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
..-...-.. +..+....-.++++. ++.+++.|+..+ ....|.+||+.+.+
T Consensus 217 ~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~-----------~~g~i~i~d~~~~~ 269 (397)
T 1sq9_A 217 LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN-----------SFGCITLYETEFGE 269 (397)
T ss_dssp TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET-----------TEEEEEEEETTTCC
T ss_pred CceeEEEeccccccccCCccceEEECCCCCEEEEEecCC-----------CCceEEEEECCCCc
Confidence 654333221 000002222333333 567777777541 02458999987764
No 146
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=93.43 E-value=6.4 Score=40.13 Aligned_cols=147 Identities=11% Similarity=0.049 Sum_probs=74.7
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceE
Q 007468 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (602)
Q Consensus 134 ~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v 211 (602)
++.+++.|+.+ ..+.+||+.+.+-...-. ... . .-.++.+ ++..++.|+.+ ..+
T Consensus 134 dg~~l~s~~~d-----------~~i~iwd~~~~~~~~~~~--~h~-~-~v~~~~~~p~~~~l~s~s~d---------~~v 189 (393)
T 1erj_A 134 DGKFLATGAED-----------RLIRIWDIENRKIVMILQ--GHE-Q-DIYSLDYFPSGDKLVSGSGD---------RTV 189 (393)
T ss_dssp TSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CCS-S-CEEEEEECTTSSEEEEEETT---------SEE
T ss_pred CCCEEEEEcCC-----------CeEEEEECCCCcEEEEEc--cCC-C-CEEEEEEcCCCCEEEEecCC---------CcE
Confidence 45666777653 357889998876433211 111 1 1122223 45556666643 468
Q ss_pred EEEECCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeec
Q 007468 212 YVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (602)
Q Consensus 212 ~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 289 (602)
.+||+.+......-.. ... -.+++.. ++.+++.|+.++. +.+||+.+..-...-.
T Consensus 190 ~iwd~~~~~~~~~~~~-----~~~--v~~~~~~~~~~~~l~~~s~d~~----------------v~iwd~~~~~~~~~~~ 246 (393)
T 1erj_A 190 RIWDLRTGQCSLTLSI-----EDG--VTTVAVSPGDGKYIAAGSLDRA----------------VRVWDSETGFLVERLD 246 (393)
T ss_dssp EEEETTTTEEEEEEEC-----SSC--EEEEEECSTTCCEEEEEETTSC----------------EEEEETTTCCEEEEEC
T ss_pred EEEECCCCeeEEEEEc-----CCC--cEEEEEECCCCCEEEEEcCCCc----------------EEEEECCCCcEEEeec
Confidence 8889988765433222 111 1222222 6778888887765 7788887664332211
Q ss_pred CCC-C--CCCCceeEEEEE-CCeEEEeccccccccccccccccccCeeEEEECCCC
Q 007468 290 IGM-P--PGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (602)
Q Consensus 290 ~g~-~--P~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~ 341 (602)
... . .....-.++++. ++++++.|+.+ ..|.+||+.+.
T Consensus 247 ~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d--------------~~v~~wd~~~~ 288 (393)
T 1erj_A 247 SENESGTGHKDSVYSVVFTRDGQSVVSGSLD--------------RSVKLWNLQNA 288 (393)
T ss_dssp ------CCCSSCEEEEEECTTSSEEEEEETT--------------SEEEEEEC---
T ss_pred ccccCCCCCCCCEEEEEECCCCCEEEEEeCC--------------CEEEEEECCCC
Confidence 000 0 011112233333 56677777754 34778887653
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=93.41 E-value=2.6 Score=41.95 Aligned_cols=172 Identities=19% Similarity=0.201 Sum_probs=81.5
Q ss_pred ceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcC-CCcEEEecCCCCCCCceeeEEEEE-C-CEEEEEeCccCCC
Q 007468 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE-KQEWKVISSPNSPPPRSAHQAVSW-K-NYLYIFGGEFTSP 147 (602)
Q Consensus 71 ~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~-~~~W~~l~~~~~P~~R~~hs~~~~-~-~~iyV~GG~~~~~ 147 (602)
-+.+++.| ++++|+.+. + .+.+++|++. +.+...+.....+....-..+++. + ..||+.+....
T Consensus 143 ~~~~~~sp--dg~l~v~~~----~-----~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~-- 209 (347)
T 3hfq_A 143 IHYTDLTP--DNRLAVIDL----G-----SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSS-- 209 (347)
T ss_dssp EEEEEECT--TSCEEEEET----T-----TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTT--
T ss_pred ceEEEECC--CCcEEEEeC----C-----CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCC--
Confidence 34466666 566776554 1 2468889988 566654332111111111122222 3 45887654321
Q ss_pred CCCcceecCeEEEEECCCCcEEEcccCC-CCCC---CcccEEEEE--C-CEEEEEcCccCCCCCeeeeceEEEEECCC-C
Q 007468 148 NQERFHHYKDFWMLDLKTNQWEQLNLKG-CPSP---RSGHRMVLY--K-HKIIVFGGFYDTLREVRYYNDLYVFDLDQ-F 219 (602)
Q Consensus 148 ~~~~~~~~~dv~~yd~~t~~W~~~~~~~-~p~~---R~~h~~~~~--~-~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t-~ 219 (602)
.-.+|.++..+.++..+.... .|.. ......+.+ + .+||+.+.. .+.+.+|++.. .
T Consensus 210 -------~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~---------~~~v~v~~~~~~g 273 (347)
T 3hfq_A 210 -------QIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG---------YNTLAVFAVTADG 273 (347)
T ss_dssp -------EEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET---------TTEEEEEEECGGG
T ss_pred -------EEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC---------CCEEEEEEECCCC
Confidence 113455555567765443211 1221 122223333 3 457776542 25678888763 3
Q ss_pred ceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeec
Q 007468 220 KWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (602)
Q Consensus 220 ~W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 289 (602)
.+..+...+... ..++ .+++. +..||+.+..... -.+|.+|+.+.+-+.+..
T Consensus 274 ~~~~~~~~~~~~-~~~~---~~~~spdg~~l~v~~~~~~~--------------v~v~~~d~~tg~l~~~~~ 327 (347)
T 3hfq_A 274 HLTLIQQISTEG-DFPR---DFDLDPTEAFVVVVNQNTDN--------------ATLYARDLTSGKLSLLQK 327 (347)
T ss_dssp CEEEEEEEECSS-SCCC---EEEECTTSSEEEEEETTTTE--------------EEEEEECTTTCCEEEEEE
T ss_pred cEEEeEEEecCC-CCcC---eEEECCCCCEEEEEEcCCCc--------------EEEEEEeCCCCeEEeccc
Confidence 555554432100 1121 23333 4457765543222 235556888888777654
No 148
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=93.40 E-value=2.8 Score=43.25 Aligned_cols=64 Identities=14% Similarity=0.011 Sum_probs=34.7
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceE
Q 007468 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (602)
Q Consensus 134 ~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v 211 (602)
++..++.|+.+ ..+.+||+.+..-...-. .......++.+ ++.+++.|+.+ ..+
T Consensus 203 ~~~~l~s~s~D-----------~~i~~wd~~~~~~~~~~~----~h~~~v~~~~~~~~g~~l~s~s~D---------~~v 258 (410)
T 1vyh_C 203 NGDHIVSASRD-----------KTIKMWEVQTGYCVKTFT----GHREWVRMVRPNQDGTLIASCSND---------QTV 258 (410)
T ss_dssp SSSEEEEEETT-----------SEEEEEETTTCCEEEEEE----CCSSCEEEEEECTTSSEEEEEETT---------SCE
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCcEEEEEe----CCCccEEEEEECCCCCEEEEEcCC---------CeE
Confidence 45566666643 357888988775432211 11111222233 56677777754 357
Q ss_pred EEEECCCCce
Q 007468 212 YVFDLDQFKW 221 (602)
Q Consensus 212 ~~yd~~t~~W 221 (602)
.+||+.+...
T Consensus 259 ~vwd~~~~~~ 268 (410)
T 1vyh_C 259 RVWVVATKEC 268 (410)
T ss_dssp EEEETTTCCE
T ss_pred EEEECCCCce
Confidence 7778776654
No 149
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=93.36 E-value=2.2 Score=42.92 Aligned_cols=50 Identities=10% Similarity=-0.061 Sum_probs=27.2
Q ss_pred EEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEeccccccccccccccccccCeeEEEECCCC
Q 007468 274 LWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (602)
Q Consensus 274 v~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~ 341 (602)
+.+||+.+..-...-. + ....-.++++. ++.+++.|+.++ .|.+||+.+.
T Consensus 316 i~v~d~~~~~~~~~~~-~---~~~~v~~~~~s~~~~~l~s~~~dg--------------~i~iw~~~~~ 366 (408)
T 4a11_B 316 IAVYTVYSGEQITMLK-G---HYKTVDCCVFQSNFQELYSGSRDC--------------NILAWVPSLY 366 (408)
T ss_dssp EEEEETTTCCEEEEEC-C---CSSCEEEEEEETTTTEEEEEETTS--------------CEEEEEECC-
T ss_pred EEEEECcCCcceeeec-c---CCCeEEEEEEcCCCCEEEEECCCC--------------eEEEEeCCCC
Confidence 7788877654332211 1 11122334444 567777777643 4888887764
No 150
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=93.23 E-value=8.7 Score=42.72 Aligned_cols=195 Identities=11% Similarity=0.064 Sum_probs=98.3
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCC--CcceecCeEEEEECCCCcE--EEcccCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ--ERFHHYKDFWMLDLKTNQW--EQLNLKG 175 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~--~~~~~~~dv~~yd~~t~~W--~~~~~~~ 175 (602)
..|+++|+.+++... ....+.... ...+.. +++.++++........ ........+|++++.+..- ..+..
T Consensus 147 ~~i~v~dl~tg~~~~--~~~~~~~~~-~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~-- 221 (695)
T 2bkl_A 147 AVLHVIDVDSGEWSK--VDVIEGGKY-ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE-- 221 (695)
T ss_dssp CEEEEEETTTCCBCS--SCCBSCCTT-CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC--
T ss_pred EEEEEEECCCCCCcC--CcccCcccc-cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe--
Confidence 479999999887641 111111111 122222 5555555544221100 0011245699999988752 22221
Q ss_pred CCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcC
Q 007468 176 CPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGG 253 (602)
Q Consensus 176 ~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG 253 (602)
.+........+.+ +++.+++...... ..+.+|.++..+..|..+... .... ...+..++.||+...
T Consensus 222 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~-----~~~~l~~~~~~~~~~~~l~~~-----~~~~--~~~~~~~g~l~~~s~ 289 (695)
T 2bkl_A 222 RTGDPTTFLQSDLSRDGKYLFVYILRGW-----SENDVYWKRPGEKDFRLLVKG-----VGAK--YEVHAWKDRFYVLTD 289 (695)
T ss_dssp CCCCTTCEEEEEECTTSCCEEEEEEETT-----TEEEEEEECTTCSSCEEEEEC-----SSCC--EEEEEETTEEEEEEC
T ss_pred cCCCCEEEEEEEECCCCCEEEEEEeCCC-----CceEEEEEcCCCCceEEeecC-----CCce--EEEEecCCcEEEEEC
Confidence 1221112223333 4444444443221 146788888877888888654 1111 112224455666644
Q ss_pred ccCCCCCccCCCCCCceeeeEEEEeCCCCe---eEEeecCCCCCCCCceeEEEEECCeEEEecccccccccccccccccc
Q 007468 254 YSKEVSTDKNQSEKGIIHSDLWSLDPRTWE---WSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFL 330 (602)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~---W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ 330 (602)
... ....++++|+.+.. |+.+.+.. + ...-.++++.+++|++...... .
T Consensus 290 ~~~-------------~~~~l~~~d~~~~~~~~~~~l~~~~--~-~~~l~~~~~~~~~lv~~~~~dg------------~ 341 (695)
T 2bkl_A 290 EGA-------------PRQRVFEVDPAKPARASWKEIVPED--S-SASLLSVSIVGGHLSLEYLKDA------------T 341 (695)
T ss_dssp TTC-------------TTCEEEEEBTTBCSGGGCEEEECCC--S-SCEEEEEEEETTEEEEEEEETT------------E
T ss_pred CCC-------------CCCEEEEEeCCCCCccCCeEEecCC--C-CCeEEEEEEECCEEEEEEEECC------------E
Confidence 321 12458899987654 88886421 1 2222334455888877765433 3
Q ss_pred CeeEEEECCC
Q 007468 331 NELYGFQLDN 340 (602)
Q Consensus 331 ndv~~yd~~t 340 (602)
..|+++++..
T Consensus 342 ~~l~~~~~~g 351 (695)
T 2bkl_A 342 SEVRVATLKG 351 (695)
T ss_dssp EEEEEEETTC
T ss_pred EEEEEEeCCC
Confidence 5688888654
No 151
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=93.22 E-value=1.6 Score=44.06 Aligned_cols=69 Identities=9% Similarity=0.020 Sum_probs=36.3
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCC-C-CCCcccEEEEE--CCEEEEEcCccCCCCCeeeec
Q 007468 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-P-SPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYN 209 (602)
Q Consensus 134 ~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~-p-~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~ 209 (602)
++ +++.|+.. ..+.+||+.+.+....-.... . .....-.++.+ ++.+++.|+.+.. ..
T Consensus 197 ~~-~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~------~g 258 (397)
T 1sq9_A 197 RG-LIATGFNN-----------GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS------FG 258 (397)
T ss_dssp TS-EEEEECTT-----------SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT------EE
T ss_pred Cc-eEEEEeCC-----------CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCC------Cc
Confidence 45 66666642 458899998775433221000 0 00112223333 5667777764311 25
Q ss_pred eEEEEECCCCc
Q 007468 210 DLYVFDLDQFK 220 (602)
Q Consensus 210 ~v~~yd~~t~~ 220 (602)
.+.+||+.+..
T Consensus 259 ~i~i~d~~~~~ 269 (397)
T 1sq9_A 259 CITLYETEFGE 269 (397)
T ss_dssp EEEEEETTTCC
T ss_pred eEEEEECCCCc
Confidence 78999988764
No 152
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=93.13 E-value=7.5 Score=38.64 Aligned_cols=121 Identities=8% Similarity=-0.033 Sum_probs=64.9
Q ss_pred ceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEE-ECCEEEEEeCccCCCCC
Q 007468 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS-WKNYLYIFGGEFTSPNQ 149 (602)
Q Consensus 71 ~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~-~~~~iyV~GG~~~~~~~ 149 (602)
+.+.+..+. ++.+|+++.. ...|++||+.++....+.. |. . -++++. -++.+||...
T Consensus 51 ~egp~~~~~-~~~l~~~d~~---------~~~i~~~d~~~~~~~~~~~---~~-~-v~~i~~~~dg~l~v~~~------- 108 (326)
T 2ghs_A 51 GEGPTFDPA-SGTAWWFNIL---------ERELHELHLASGRKTVHAL---PF-M-GSALAKISDSKQLIASD------- 108 (326)
T ss_dssp EEEEEEETT-TTEEEEEEGG---------GTEEEEEETTTTEEEEEEC---SS-C-EEEEEEEETTEEEEEET-------
T ss_pred CcCCeEeCC-CCEEEEEECC---------CCEEEEEECCCCcEEEEEC---CC-c-ceEEEEeCCCeEEEEEC-------
Confidence 344555542 3678777642 2478999999887765542 11 1 222222 3677777541
Q ss_pred CcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEe
Q 007468 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (602)
Q Consensus 150 ~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v 224 (602)
..+++||+.+.++..+.......+......+.+ +++||+. ...... ......||+|+ +.+...+
T Consensus 109 ------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~-~~~~~~--~~~~~~l~~~~--~g~~~~~ 174 (326)
T 2ghs_A 109 ------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIG-TMGRKA--ETGAGSIYHVA--KGKVTKL 174 (326)
T ss_dssp ------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEE-EEETTC--CTTCEEEEEEE--TTEEEEE
T ss_pred ------CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEE-eCCCcC--CCCceEEEEEe--CCcEEEe
Confidence 248999999998877643211111111122222 5677763 221100 01235789998 4555544
No 153
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=93.10 E-value=4.7 Score=39.47 Aligned_cols=109 Identities=15% Similarity=0.119 Sum_probs=57.1
Q ss_pred EEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCc----EEEecCCCCCCCceeeEEEEE-CCE-EEEEeCccCC
Q 007468 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE----WKVISSPNSPPPRSAHQAVSW-KNY-LYIFGGEFTS 146 (602)
Q Consensus 73 s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~----W~~l~~~~~P~~R~~hs~~~~-~~~-iyV~GG~~~~ 146 (602)
++.+.| ++.+++.|+. -..|.+|+..+.. ...+.. ....-.+++.. ++. +++.|+..
T Consensus 16 ~~~~s~--~~~~l~~~~~---------d~~v~iw~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d-- 78 (342)
T 1yfq_A 16 DIKIIP--SKSLLLITSW---------DGSLTVYKFDIQAKNVDLLQSLR----YKHPLLCCNFIDNTDLQIYVGTVQ-- 78 (342)
T ss_dssp EEEEEG--GGTEEEEEET---------TSEEEEEEEETTTTEEEEEEEEE----CSSCEEEEEEEESSSEEEEEEETT--
T ss_pred EEEEcC--CCCEEEEEcC---------CCeEEEEEeCCCCccccceeeee----cCCceEEEEECCCCCcEEEEEcCC--
Confidence 444555 5666777762 2467788877766 333321 11122223332 556 66677643
Q ss_pred CCCCcceecCeEEEEEC-CCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCC
Q 007468 147 PNQERFHHYKDFWMLDL-KTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (602)
Q Consensus 147 ~~~~~~~~~~dv~~yd~-~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t 218 (602)
..+.+||+ .+.....+... +....-.+++...+.+++.|+.+ ..+.+||+.+
T Consensus 79 ---------g~i~~wd~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~l~s~~~d---------~~i~iwd~~~ 131 (342)
T 1yfq_A 79 ---------GEILKVDLIGSPSFQALTNN--EANLGICRICKYGDDKLIAASWD---------GLIEVIDPRN 131 (342)
T ss_dssp ---------SCEEEECSSSSSSEEECBSC--CCCSCEEEEEEETTTEEEEEETT---------SEEEEECHHH
T ss_pred ---------CeEEEEEeccCCceEecccc--CCCCceEEEEeCCCCEEEEEcCC---------CeEEEEcccc
Confidence 35888999 88876555431 01111222333335566666643 3577777654
No 154
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=93.05 E-value=3.2 Score=40.65 Aligned_cols=188 Identities=11% Similarity=0.004 Sum_probs=89.4
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~ 159 (602)
++.+++.|+. -..+.+||+.+.+-...-.. ....-.+++.. ++.+++.|+.+ ..+.
T Consensus 66 ~~~~l~s~s~---------d~~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~sgs~D-----------~~v~ 122 (304)
T 2ynn_A 66 RKNWIIVGSD---------DFRIRVFNYNTGEKVVDFEA---HPDYIRSIAVHPTKPYVLSGSDD-----------LTVK 122 (304)
T ss_dssp GGTEEEEEET---------TSEEEEEETTTCCEEEEEEC---CSSCEEEEEECSSSSEEEEEETT-----------SCEE
T ss_pred CCCEEEEECC---------CCEEEEEECCCCcEEEEEeC---CCCcEEEEEEcCCCCEEEEECCC-----------CeEE
Confidence 4566666662 24678889887654322111 11111222222 45566666653 3467
Q ss_pred EEECCCCcEEEcccCCCCCCCcccEEEEE---CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCc
Q 007468 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR 236 (602)
Q Consensus 160 ~yd~~t~~W~~~~~~~~p~~R~~h~~~~~---~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R 236 (602)
+||+.++.=..... ......-.++.+ ++.+++.|+.+ ..+.+||+.+..-...... ...+
T Consensus 123 lWd~~~~~~~~~~~---~~h~~~v~~v~~~p~~~~~l~sgs~D---------~~v~iwd~~~~~~~~~~~~-----~~~~ 185 (304)
T 2ynn_A 123 LWNWENNWALEQTF---EGHEHFVMCVAFNPKDPSTFASGCLD---------RTVKVWSLGQSTPNFTLTT-----GQER 185 (304)
T ss_dssp EEEGGGTTEEEEEE---CCCCSCEEEEEECTTCTTEEEEEETT---------SEEEEEETTCSSCSEEEEC-----CCTT
T ss_pred EEECCCCcchhhhh---cccCCcEEEEEECCCCCCEEEEEeCC---------CeEEEEECCCCCccceecc-----CCcC
Confidence 78876542111111 101111122333 34677777764 3577888765431111111 1111
Q ss_pred cceeEEEe---CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEe
Q 007468 237 SGFQFFVY---QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLF 312 (602)
Q Consensus 237 ~~~~~~~~---~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~ 312 (602)
.-..+... ++.+++.|+.++. +.+||+.+..-...-. + ....-.++++. .+.+++.
T Consensus 186 ~v~~~~~~~~~~~~~l~s~s~D~~----------------i~iWd~~~~~~~~~~~-~---h~~~v~~~~~~p~~~~l~s 245 (304)
T 2ynn_A 186 GVNYVDYYPLPDKPYMITASDDLT----------------IKIWDYQTKSCVATLE-G---HMSNVSFAVFHPTLPIIIS 245 (304)
T ss_dssp CEEEEEECCSTTCCEEEEEETTSE----------------EEEEETTTTEEEEEEE-C---CSSCEEEEEECSSSSEEEE
T ss_pred cEEEEEEEEcCCCCEEEEEcCCCe----------------EEEEeCCCCccceeeC-C---CCCCEEEEEECCCCCEEEE
Confidence 11112221 4556777776654 7788887654222111 1 11111223333 4567777
Q ss_pred ccccccccccccccccccCeeEEEECCCCc
Q 007468 313 GGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 313 GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
|+.+ ..|.+||+.+.+
T Consensus 246 ~s~D--------------g~i~iWd~~~~~ 261 (304)
T 2ynn_A 246 GSED--------------GTLKIWNSSTYK 261 (304)
T ss_dssp EETT--------------SCEEEEETTTCC
T ss_pred EcCC--------------CeEEEEECCCCc
Confidence 7764 348889987754
No 155
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=93.05 E-value=5.8 Score=44.59 Aligned_cols=193 Identities=11% Similarity=0.056 Sum_probs=97.6
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCC---CCCcceecCeEEEEECCCCcE--EEcccC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSP---NQERFHHYKDFWMLDLKTNQW--EQLNLK 174 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~---~~~~~~~~~dv~~yd~~t~~W--~~~~~~ 174 (602)
..|+++|+.++++..... ....+..+.+ .+..++++...... ..........+|++++.+..- ..+..
T Consensus 189 ~~i~v~dl~tg~~~~~~~-----~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~- 262 (741)
T 1yr2_A 189 RTVKFVGVADGKPLADEL-----KWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA- 262 (741)
T ss_dssp EEEEEEETTTCCEEEEEE-----EEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC-
T ss_pred EEEEEEECCCCCCCCccC-----CCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec-
Confidence 369999999998865421 1111112222 22333333322110 000001235688898877642 11211
Q ss_pred CCCC-CCcccEEEEE--CCE-EEEEcCccCCCCCeeeeceEEEEECCCC--c-eEEeccCCCCCCCCCccceeEEEeCCE
Q 007468 175 GCPS-PRSGHRMVLY--KHK-IIVFGGFYDTLREVRYYNDLYVFDLDQF--K-WQEIKPRFGSMWPSPRSGFQFFVYQDE 247 (602)
Q Consensus 175 ~~p~-~R~~h~~~~~--~~~-Lyv~GG~~~~~~~~~~~~~v~~yd~~t~--~-W~~v~~~~~~~~P~~R~~~~~~~~~~~ 247 (602)
.+. +.. ...+.+ +++ |++....... ..+.++++|+.+. . |..+... ...... .+...++.
T Consensus 263 -~~~~~~~-~~~~~~SpDG~~l~~~~~~~~~-----~~~~l~~~d~~~~~~~~~~~l~~~-----~~~~~~-~~~~dg~~ 329 (741)
T 1yr2_A 263 -TPELPKR-GHGASVSSDGRWVVITSSEGTD-----PVNTVHVARVTNGKIGPVTALIPD-----LKAQWD-FVDGVGDQ 329 (741)
T ss_dssp -CTTCTTC-EEEEEECTTSCEEEEEEECTTC-----SCCEEEEEEEETTEECCCEEEECS-----SSSCEE-EEEEETTE
T ss_pred -cCCCCeE-EEEEEECCCCCEEEEEEEccCC-----CcceEEEEECCCCCCcccEEecCC-----CCceEE-EEeccCCE
Confidence 111 222 222333 454 4444332111 2468999999877 6 8888654 112222 22344788
Q ss_pred EEEEcCccCCCCCccCCCCCCceeeeEEEEeCCC--CeeEEeecCCCCCCCCceeEEEEECCeEEEeccccccccccccc
Q 007468 248 VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT--WEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVI 325 (602)
Q Consensus 248 Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t--~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~ 325 (602)
||+...... ....++++|+.+ ..|+.+.+.. .....++...+++|++......
T Consensus 330 l~~~s~~~~-------------~~~~l~~~d~~~~~~~~~~l~~~~----~~~l~~~~~~~~~lv~~~~~dg-------- 384 (741)
T 1yr2_A 330 LWFVSGDGA-------------PLKKIVRVDLSGSTPRFDTVVPES----KDNLESVGIAGNRLFASYIHDA-------- 384 (741)
T ss_dssp EEEEECTTC-------------TTCEEEEEECSSSSCEEEEEECCC----SSEEEEEEEEBTEEEEEEEETT--------
T ss_pred EEEEECCCC-------------CCCEEEEEeCCCCccccEEEecCC----CCeEEEEEEECCEEEEEEEECC--------
Confidence 888754322 124589999887 5798886431 1122234445777777665433
Q ss_pred cccccCeeEEEECCCC
Q 007468 326 MSLFLNELYGFQLDNH 341 (602)
Q Consensus 326 ~~~~~ndv~~yd~~t~ 341 (602)
...|+++++...
T Consensus 385 ----~~~l~~~~~~g~ 396 (741)
T 1yr2_A 385 ----KSQVLAFDLDGK 396 (741)
T ss_dssp ----EEEEEEEETTSC
T ss_pred ----EEEEEEEeCCCC
Confidence 356888887543
No 156
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=93.03 E-value=7.7 Score=38.47 Aligned_cols=210 Identities=10% Similarity=0.056 Sum_probs=107.8
Q ss_pred eEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCC--cEEEecCCCC----CCCc-eeeEEEEE--CCEEEEEeC
Q 007468 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNS----PPPR-SAHQAVSW--KNYLYIFGG 142 (602)
Q Consensus 72 ~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~--~W~~l~~~~~----P~~R-~~hs~~~~--~~~iyV~GG 142 (602)
+.+++.+ ++.|||.... .+.|++|++... .-..+..... +... .-..+++. ++.|||..+
T Consensus 94 ~gia~d~--~g~l~v~d~~---------~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~ 162 (329)
T 3fvz_A 94 HGLSIDT--DGNYWVTDVA---------LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDG 162 (329)
T ss_dssp EEEEECT--TSCEEEEETT---------TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEEC
T ss_pred eEEEECC--CCCEEEEECC---------CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeC
Confidence 3455554 5668776541 246888988765 2233321100 0111 22233443 578999975
Q ss_pred ccCCCCCCcceecCeEEEEECCCCcEEEcccCCC-----CCCCc-ccEEEEE-C-CEEEEEcCccCCCCCeeeeceEEEE
Q 007468 143 EFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-----PSPRS-GHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVF 214 (602)
Q Consensus 143 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~-----p~~R~-~h~~~~~-~-~~Lyv~GG~~~~~~~~~~~~~v~~y 214 (602)
+. ...+.+|+.....-..+...+. +.... -+++++. + +.|||.... .+.|.+|
T Consensus 163 ~~----------~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~---------~~~I~~~ 223 (329)
T 3fvz_A 163 YC----------NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE---------NGRIQCF 223 (329)
T ss_dssp SS----------CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT---------TTEEEEE
T ss_pred CC----------CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC---------CCEEEEE
Confidence 21 2468899865554444432111 11111 2344443 3 799998653 3579999
Q ss_pred ECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCC
Q 007468 215 DLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP 294 (602)
Q Consensus 215 d~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 294 (602)
++.+.+....-..+ .....-.+++...+.+|+..|.... .......+++|++.+.+....-..+ ..
T Consensus 224 ~~~~G~~~~~~~~~----~~~~~~~~~~~~pg~~~~~~g~~~v---------~~~~~~~v~~~~~~~g~~~~~~~~~-~~ 289 (329)
T 3fvz_A 224 KTDTKEFVREIKHA----SFGRNVFAISYIPGFLFAVNGKPYF---------GDQEPVQGFVMNFSSGEIIDVFKPV-RK 289 (329)
T ss_dssp ETTTCCEEEEECCT----TTTTCEEEEEEETTEEEEEECCCCT---------TCSCCCCEEEEETTTCCEEEEECCS-SS
T ss_pred ECCCCcEEEEEecc----ccCCCcceeeecCCEEEEeCCCEEe---------ccCCCcEEEEEEcCCCeEEEEEcCC-CC
Confidence 99876654433221 1111122333345777777665321 0122346889998777655542211 01
Q ss_pred CCCceeEEEEE-CCeEEEeccccccccccccccccccCeeEEEECC
Q 007468 295 GPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (602)
Q Consensus 295 ~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~ 339 (602)
....-+++++. ++.|||.... .+.|++|++.
T Consensus 290 ~~~~p~~ia~~~dG~lyvad~~--------------~~~I~~~~~~ 321 (329)
T 3fvz_A 290 HFDMPHDIVASEDGTVYIGDAH--------------TNTVWKFTLT 321 (329)
T ss_dssp CCSSEEEEEECTTSEEEEEESS--------------SCCEEEEEEE
T ss_pred ccCCeeEEEECCCCCEEEEECC--------------CCEEEEEeCC
Confidence 11223344544 5688887543 2468888764
No 157
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=93.00 E-value=3.2 Score=42.77 Aligned_cols=94 Identities=11% Similarity=0.152 Sum_probs=55.2
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~ 178 (602)
+.|+++|..+++...+-... .....-.++.+ ++.+++.|+.+ ..+.+||+.+.+-..... ...
T Consensus 125 ~tV~lWd~~tg~~~~~~~~~--~~~~~V~sv~fspdg~~lasgs~D-----------g~v~iWd~~~~~~~~~~~--~h~ 189 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQME--QPGEYISSVAWIKEGNYLAVGTSS-----------AEVQLWDVQQQKRLRNMT--SHS 189 (420)
T ss_dssp TEEEEEETTTCCEEEEEECC--STTCCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CCS
T ss_pred CEEEEEECCCCCEEEEEEec--CCCCcEEEEEECCCCCEEEEEECC-----------CeEEEEEcCCCcEEEEEe--CCC
Confidence 47999999998877553322 12222233444 46677777753 357889998876433221 122
Q ss_pred CCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCc
Q 007468 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (602)
Q Consensus 179 ~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~ 220 (602)
. ...++.+++.+++.|+.+ ..+..+|..+..
T Consensus 190 ~--~v~~~s~~~~~l~sgs~d---------~~i~~~d~~~~~ 220 (420)
T 4gga_A 190 A--RVGSLSWNSYILSSGSRS---------GHIHHHDVRVAE 220 (420)
T ss_dssp S--CEEEEEEETTEEEEEETT---------SEEEEEETTSSS
T ss_pred C--ceEEEeeCCCEEEEEeCC---------CceeEeeecccc
Confidence 2 234455677777777754 356777776544
No 158
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=92.96 E-value=12 Score=41.60 Aligned_cols=151 Identities=12% Similarity=0.012 Sum_probs=81.1
Q ss_pred cCeEEEEECCC------C--cEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCC---ceEE
Q 007468 155 YKDFWMLDLKT------N--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF---KWQE 223 (602)
Q Consensus 155 ~~dv~~yd~~t------~--~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~---~W~~ 223 (602)
.+.+|++|+.+ . .+..+... ... ........++.||+.+.... ....|+.+|+.+. .|+.
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~--~~~-~~~~~s~dg~~l~~~s~~~~------~~~~l~~~d~~~~~~~~~~~ 328 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDN--FEG-EYDYVTNEGTVFTFKTNRHS------PNYRLINIDFTDPEESKWKV 328 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECS--SSS-CEEEEEEETTEEEEEECTTC------TTCEEEEEETTSCCGGGCEE
T ss_pred ccEEEEEECcccccccCCccceEEeeCC--CCc-EEEEEeccCCEEEEEECCCC------CCCEEEEEeCCCCCccccee
Confidence 36899999876 4 57776541 111 11122234678888865432 1357999999875 5888
Q ss_pred eccCCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCe-eEEeecCCCCCCCCceeE
Q 007468 224 IKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE-WSKVKKIGMPPGPRAGFS 301 (602)
Q Consensus 224 v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~-W~~l~~~g~~P~~R~~~s 301 (602)
+.+.. ....-..++.. ++.|++.....+ ...++++++.+.. ...+.. | ...-.+
T Consensus 329 l~~~~-----~~~~~~~~~~~~~~~lv~~~~~~g--------------~~~l~~~~~~~g~~~~~l~~----~-~~~v~~ 384 (710)
T 2xdw_A 329 LVPEH-----EKDVLEWVACVRSNFLVLCYLHDV--------------KNTLQLHDLATGALLKIFPL----E-VGSVVG 384 (710)
T ss_dssp EECCC-----SSCEEEEEEEETTTEEEEEEEETT--------------EEEEEEEETTTCCEEEEECC----C-SSEEEE
T ss_pred ccCCC-----CCCeEEEEEEEcCCEEEEEEEECC--------------EEEEEEEECCCCCEEEecCC----C-CceEEE
Confidence 76541 11122234444 777777665433 2458899985543 444431 2 111112
Q ss_pred EEEE-CCeEEEeccccccccccccccccccCeeEEEECCCCc--eEEeEe
Q 007468 302 MCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR--WYPLEL 348 (602)
Q Consensus 302 ~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~--W~~l~~ 348 (602)
+... ++..++|..... ..-..||.||+.+++ +..+..
T Consensus 385 ~~~s~d~~~l~~~~ss~----------~~P~~i~~~d~~tg~~~~~~l~~ 424 (710)
T 2xdw_A 385 YSGQKKDTEIFYQFTSF----------LSPGIIYHCDLTKEELEPRVFRE 424 (710)
T ss_dssp EECCTTCSEEEEEEECS----------SCCCEEEEEETTSSSCCCEEEEE
T ss_pred EecCCCCCEEEEEEeCC----------CCCCEEEEEECCCCccceEEeee
Confidence 2221 333333322111 124679999998877 665554
No 159
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=92.90 E-value=1.6 Score=42.83 Aligned_cols=111 Identities=9% Similarity=0.123 Sum_probs=55.2
Q ss_pred EEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE----CCEEEEEeCccCCCCC
Q 007468 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW----KNYLYIFGGEFTSPNQ 149 (602)
Q Consensus 74 ~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~----~~~iyV~GG~~~~~~~ 149 (602)
+++.| ++++++.|+. -..+.+||+.......+..... .... -.++.+ .+.+++.|+.+
T Consensus 15 ~~~s~--~g~~las~s~---------D~~v~iw~~~~~~~~~~~~l~g-H~~~-V~~v~~s~~~~g~~l~s~s~D----- 76 (297)
T 2pm7_B 15 AVMDY--YGKRMATCSS---------DKTIKIFEVEGETHKLIDTLTG-HEGP-VWRVDWAHPKFGTILASCSYD----- 76 (297)
T ss_dssp EEECT--TSSEEEEEET---------TSCEEEEEBCSSCBCCCEEECC-CSSC-EEEEEECCGGGCSEEEEEETT-----
T ss_pred EEECC--CCCEEEEEeC---------CCEEEEEecCCCCcEEEEEEcc-ccCC-eEEEEecCCCcCCEEEEEcCC-----
Confidence 34444 5777888872 2467888876543321111000 0111 122232 14566777653
Q ss_pred CcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEEC----CEEEEEcCccCCCCCeeeeceEEEEECCCC
Q 007468 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK----HKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (602)
Q Consensus 150 ~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~----~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~ 219 (602)
..+.++|+.+..|..+... ......-.++.+. +.+++.|+.+ ..+.+||+.+.
T Consensus 77 ------~~v~iWd~~~~~~~~~~~~--~~h~~~v~~v~~~p~~~g~~l~s~s~d---------~~v~~wd~~~~ 133 (297)
T 2pm7_B 77 ------GKVMIWKEENGRWSQIAVH--AVHSASVNSVQWAPHEYGPMLLVASSD---------GKVSVVEFKEN 133 (297)
T ss_dssp ------TEEEEEEBSSSCBCCCEEE--CCCSSCEEEEEECCGGGCSEEEEEETT---------SEEEEEEBCSS
T ss_pred ------CEEEEEEcCCCceEEEEEe--ecCCCceeEEEeCcCCCCcEEEEEECC---------CcEEEEEecCC
Confidence 3577888887776544321 1111112233332 4566677653 35677777654
No 160
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=92.86 E-value=7.4 Score=37.79 Aligned_cols=90 Identities=20% Similarity=0.128 Sum_probs=48.9
Q ss_pred eEEEEECCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe
Q 007468 210 DLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (602)
Q Consensus 210 ~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l 287 (602)
.+++||+.+.+-..+... +....-+++++. +..||+. + ..+++||+.+.+-...
T Consensus 220 ~v~~~d~~~~~~~~~~~~-----~~~~~~~~~~~s~dg~~l~~~---~----------------~~v~~~d~~~~~~~~~ 275 (337)
T 1pby_B 220 GLLTMDLETGEMAMREVR-----IMDVFYFSTAVNPAKTRAFGA---Y----------------NVLESFDLEKNASIKR 275 (337)
T ss_dssp EEEEEETTTCCEEEEEEE-----ECSSCEEEEEECTTSSEEEEE---E----------------SEEEEEETTTTEEEEE
T ss_pred ceEEEeCCCCCceEeecC-----CCCCceeeEEECCCCCEEEEe---C----------------CeEEEEECCCCcCcce
Confidence 689999998765533332 222222233333 4456654 2 2488999887654433
Q ss_pred ecCCCCCCCCceeEEEEE-CC-eEEEeccccccccccccccccccCeeEEEECCCCce
Q 007468 288 KKIGMPPGPRAGFSMCVH-KK-RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (602)
Q Consensus 288 ~~~g~~P~~R~~~s~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W 343 (602)
-..+. .-.++++. ++ .||+ ++. -+.|.+||+.+.+-
T Consensus 276 ~~~~~-----~~~~~~~s~dg~~l~~-~~~--------------~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 276 VPLPH-----SYYSVNVSTDGSTVWL-GGA--------------LGDLAAYDAETLEK 313 (337)
T ss_dssp EECSS-----CCCEEEECTTSCEEEE-ESB--------------SSEEEEEETTTCCE
T ss_pred ecCCC-----ceeeEEECCCCCEEEE-EcC--------------CCcEEEEECcCCcE
Confidence 32221 22344444 34 4555 332 25699999987653
No 161
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=92.84 E-value=7 Score=37.47 Aligned_cols=105 Identities=10% Similarity=0.073 Sum_probs=56.7
Q ss_pred CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCC
Q 007468 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEK 267 (602)
Q Consensus 189 ~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~ 267 (602)
++. ++.|+.+ ..+.+||+.+..-...-.. ....-.+++.. ++ .++.|+.++.
T Consensus 195 ~~~-~~~~~~d---------g~i~i~d~~~~~~~~~~~~------~~~~i~~~~~~~~~-~l~~~~~dg~---------- 247 (313)
T 3odt_A 195 DGH-FISCSND---------GLIKLVDMHTGDVLRTYEG------HESFVYCIKLLPNG-DIVSCGEDRT---------- 247 (313)
T ss_dssp TTE-EEEEETT---------SEEEEEETTTCCEEEEEEC------CSSCEEEEEECTTS-CEEEEETTSE----------
T ss_pred CCe-EEEccCC---------CeEEEEECCchhhhhhhhc------CCceEEEEEEecCC-CEEEEecCCE----------
Confidence 566 5666643 4688899887543222111 11111223333 44 4666766554
Q ss_pred CceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEeccccccccccccccccccCeeEEEECCCCceEE
Q 007468 268 GIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (602)
Q Consensus 268 ~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~ 345 (602)
+.+||+.+......-.. +.. .-.++++. +++ ++.|+.+ +.|.+|++.+.+|..
T Consensus 248 ------v~iwd~~~~~~~~~~~~---~~~-~i~~~~~~~~~~-~~~~~~d--------------g~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 248 ------VRIWSKENGSLKQVITL---PAI-SIWSVDCMSNGD-IIVGSSD--------------NLVRIFSQEKSRWAS 301 (313)
T ss_dssp ------EEEECTTTCCEEEEEEC---SSS-CEEEEEECTTSC-EEEEETT--------------SCEEEEESCGGGCCC
T ss_pred ------EEEEECCCCceeEEEec---cCc-eEEEEEEccCCC-EEEEeCC--------------CcEEEEeCCCCceee
Confidence 88899887764443321 111 22334443 455 5556543 459999998887754
No 162
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=92.82 E-value=3.2 Score=41.76 Aligned_cols=103 Identities=14% Similarity=0.103 Sum_probs=52.5
Q ss_pred CEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEE
Q 007468 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFW 159 (602)
Q Consensus 82 ~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~ 159 (602)
+.+++.|+. -..+.+||+.+......... +.+......... ++.+++.|+.. ..+.
T Consensus 112 ~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~v~ 169 (408)
T 4a11_B 112 TGMFTSSSF---------DKTLKVWDTNTLQTADVFNF--EETVYSHHMSPVSTKHCLVAVGTRG-----------PKVQ 169 (408)
T ss_dssp TTCEEEEET---------TSEEEEEETTTTEEEEEEEC--SSCEEEEEECSSCSSCCEEEEEESS-----------SSEE
T ss_pred CcEEEEEeC---------CCeEEEeeCCCCccceeccC--CCceeeeEeecCCCCCcEEEEEcCC-----------CeEE
Confidence 446666652 24688999988776544321 122222222111 23466666542 3578
Q ss_pred EEECCCCcEEEcccCCCCCCCcccEEEEE--C-CEEEEEcCccCCCCCeeeeceEEEEECCCC
Q 007468 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K-HKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (602)
Q Consensus 160 ~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~-~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~ 219 (602)
+||+.+..-...- ........++.+ + ..+++.|+.+ ..+.+||+.+.
T Consensus 170 ~~d~~~~~~~~~~----~~~~~~v~~~~~~~~~~~ll~~~~~d---------g~i~i~d~~~~ 219 (408)
T 4a11_B 170 LCDLKSGSCSHIL----QGHRQEILAVSWSPRYDYILATASAD---------SRVKLWDVRRA 219 (408)
T ss_dssp EEESSSSCCCEEE----CCCCSCEEEEEECSSCTTEEEEEETT---------SCEEEEETTCS
T ss_pred EEeCCCcceeeee----cCCCCcEEEEEECCCCCcEEEEEcCC---------CcEEEEECCCC
Confidence 8888765422111 111112223333 2 3477777754 35788888664
No 163
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=92.79 E-value=4.8 Score=38.87 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=19.0
Q ss_pred EEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEE
Q 007468 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV 115 (602)
Q Consensus 74 ~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~ 115 (602)
+.+.| ++++++.|+. -..|.+||..+++-..
T Consensus 73 v~~~~--~~~~l~sgs~---------Dg~v~iw~~~~~~~~~ 103 (318)
T 4ggc_A 73 VAWIK--EGNYLAVGTS---------SAEVQLWDVQQQKRLR 103 (318)
T ss_dssp EEECT--TSSEEEEEET---------TSEEEEEETTTTEEEE
T ss_pred EEECC--CCCEEEEEEC---------CCcEEEeecCCceeEE
Confidence 34444 5667777762 2367788888876543
No 164
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=92.79 E-value=2.7 Score=41.45 Aligned_cols=196 Identities=12% Similarity=0.094 Sum_probs=96.5
Q ss_pred EEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-C----CEEEEEeCccCCC
Q 007468 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K----NYLYIFGGEFTSP 147 (602)
Q Consensus 73 s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~----~~iyV~GG~~~~~ 147 (602)
++.+.|. +..+++.|+.. . .-..+.+||+.+.....+.... .... ..++.+ . +.+++.|+..
T Consensus 23 ~~~~~p~-~~~l~~~~s~~-~-----~d~~v~iw~~~~~~~~~~~~~~--~~~~-v~~~~~~~~~~~~~~l~~~~~d--- 89 (357)
T 3i2n_A 23 DCKWVPC-SAKFVTMGNFA-R-----GTGVIQLYEIQHGDLKLLREIE--KAKP-IKCGTFGATSLQQRYLATGDFG--- 89 (357)
T ss_dssp EEEECTT-SSEEEEEEC---C-----CCEEEEEEEECSSSEEEEEEEE--ESSC-EEEEECTTCCTTTCCEEEEETT---
T ss_pred EEEEcCC-CceEEEecCcc-C-----CCcEEEEEeCCCCcccceeeec--ccCc-EEEEEEcCCCCCCceEEEecCC---
Confidence 4445552 24666666520 0 0246889999888765442211 1111 122233 2 3666777643
Q ss_pred CCCcceecCeEEEEECCCCc--EEEcccCCCCCCCcccEEEE-------ECCEEEEEcCccCCCCCeeeeceEEEEECCC
Q 007468 148 NQERFHHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVL-------YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (602)
Q Consensus 148 ~~~~~~~~~dv~~yd~~t~~--W~~~~~~~~p~~R~~h~~~~-------~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t 218 (602)
..+.+||+.+.. ...+.. ... .-.++.. -++.+++.|+.+ ..+.+||+.+
T Consensus 90 --------g~i~iwd~~~~~~~~~~~~~---~~~-~v~~~~~~~~~~~s~~~~~l~~~~~d---------~~i~vwd~~~ 148 (357)
T 3i2n_A 90 --------GNLHIWNLEAPEMPVYSVKG---HKE-IINAIDGIGGLGIGEGAPEIVTGSRD---------GTVKVWDPRQ 148 (357)
T ss_dssp --------SCEEEECTTSCSSCSEEECC---CSS-CEEEEEEESGGGCC-CCCEEEEEETT---------SCEEEECTTS
T ss_pred --------CeEEEEeCCCCCccEEEEEe---ccc-ceEEEeeccccccCCCccEEEEEeCC---------CeEEEEeCCC
Confidence 347788887664 111111 111 1111111 245566677653 3688888887
Q ss_pred Cc--eEEeccCCCCCCCCCccceeEEE-----eCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCC
Q 007468 219 FK--WQEIKPRFGSMWPSPRSGFQFFV-----YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG 291 (602)
Q Consensus 219 ~~--W~~v~~~~~~~~P~~R~~~~~~~-----~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g 291 (602)
.. ...+..... ...+.-.+++. .++.+++.|+.++. +.+||+.+..-.....
T Consensus 149 ~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~~~~~~~-- 207 (357)
T 3i2n_A 149 KDDPVANMEPVQG---ENKRDCWTVAFGNAYNQEERVVCAGYDNGD----------------IKLFDLRNMALRWETN-- 207 (357)
T ss_dssp CSSCSEEECCCTT---SCCCCEEEEEEECCCC-CCCEEEEEETTSE----------------EEEEETTTTEEEEEEE--
T ss_pred CCCcceeccccCC---CCCCceEEEEEEeccCCCCCEEEEEccCCe----------------EEEEECccCceeeecC--
Confidence 54 344433211 11122222221 26677777776554 8889988766433322
Q ss_pred CCCCCCceeEEEEE----CCeEEEeccccccccccccccccccCeeEEEECCC
Q 007468 292 MPPGPRAGFSMCVH----KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (602)
Q Consensus 292 ~~P~~R~~~s~~~~----~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t 340 (602)
....-.++++. ++.++++|+.. ..|.+||+.+
T Consensus 208 ---~~~~v~~~~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~ 243 (357)
T 3i2n_A 208 ---IKNGVCSLEFDRKDISMNKLVATSLE--------------GKFHVFDMRT 243 (357)
T ss_dssp ---CSSCEEEEEESCSSSSCCEEEEEEST--------------TEEEEEEEEE
T ss_pred ---CCCceEEEEcCCCCCCCCEEEEECCC--------------CeEEEEeCcC
Confidence 12223344444 45667776643 3477777654
No 165
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=92.69 E-value=3.5 Score=38.83 Aligned_cols=148 Identities=16% Similarity=0.321 Sum_probs=78.0
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEE--ecC--CCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCccee
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV--ISS--PNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHH 154 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~--l~~--~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~ 154 (602)
++++|+|=|. .+|+++.....+.. +.. +.+|. .--++... ++.+|+|-|
T Consensus 33 ~g~~y~Fkg~-----------~~wr~~~~~~~~~p~~I~~~wp~Lp~--~iDAa~~~~~~~~iyfFkG------------ 87 (207)
T 1pex_A 33 RGETMIFKDR-----------FFWRLHPQQVDAELFLTKSFWPELPN--RIDAAYEHPSHDLIFIFRG------------ 87 (207)
T ss_dssp TTEEEEEETT-----------EEEEECSSSSCCEEEEHHHHCTTSCS--SCCEEEEETTTTEEEEEET------------
T ss_pred CCcEEEEECC-----------EEEEEeCCCcCCCceehhHhccCCCC--CccEEEEeccCCcEEEEcc------------
Confidence 6889999773 56777765444332 111 22332 22233333 589999987
Q ss_pred cCeEEEEECCCCcE---EEcccCCCCCCCcc-cEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceE-----E
Q 007468 155 YKDFWMLDLKTNQW---EQLNLKGCPSPRSG-HRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-----E 223 (602)
Q Consensus 155 ~~dv~~yd~~t~~W---~~~~~~~~p~~R~~-h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~-----~ 223 (602)
+.+|+|+-.+-.- ..+...|+|..-.. -+++.+ ++++|+|-| +..|+||..+.+-. .
T Consensus 88 -~~~w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG-----------~~ywr~d~~~~~~d~gyPr~ 155 (207)
T 1pex_A 88 -RKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG-----------NQVWRYDDTNHIMDKDYPRL 155 (207)
T ss_dssp -TEEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET-----------TEEEEEETTTTEECSSCCCB
T ss_pred -CEEEEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC-----------CEEEEEeCcCccccCCCCcc
Confidence 3467776432111 22332334432112 233333 479999977 46899998764211 0
Q ss_pred eccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEE
Q 007468 224 IKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (602)
Q Consensus 224 v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (602)
+.....+ +| .... ++...++.+|+|-|. ..|+||..+.+-..
T Consensus 156 i~~~~~G-ip-~~iD-aAf~~~g~~YfFkg~------------------~y~rf~~~~~~v~~ 197 (207)
T 1pex_A 156 IEEDFPG-IG-DKVD-AVYEKNGYIYFFNGP------------------IQFEYSIWSNRIVR 197 (207)
T ss_dssp HHHHSTT-SC-SCCS-EEEEETTEEEEEETT------------------EEEEEETTTTEEEE
T ss_pred HHHcCCC-CC-CCcc-EEEEcCCcEEEEECC------------------EEEEEeCCccEEec
Confidence 1100001 12 1222 333458999999774 27889887665443
No 166
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=92.65 E-value=10 Score=41.80 Aligned_cols=112 Identities=7% Similarity=-0.051 Sum_probs=55.6
Q ss_pred eceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCC-eeE
Q 007468 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW-EWS 285 (602)
Q Consensus 208 ~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~-~W~ 285 (602)
...+++||+.+..-..+.... .....-..++.. +++.++++..+.. .....++++|+.+. .+.
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~~----~~~~~~~~~~~spdg~~l~~~~~~~~-----------~~~~~v~~~d~~~g~~~~ 298 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTGE----PKEKFLTNLSWSPDENILYVAEVNRA-----------QNECKVNAYDAETGRFVR 298 (706)
T ss_dssp EEEEEEEETTTTEEEECCCCS----CTTCEEEEEEECTTSSEEEEEEECTT-----------SCEEEEEEEETTTCCEEE
T ss_pred eeEEEEEECCCCceEeeccCC----CCceeEeeEEEECCCCEEEEEEeCCC-----------CCeeEEEEEECCCCceee
Confidence 367999999888765544320 111111222222 5554444443322 23457999999888 776
Q ss_pred EeecCCCCCCCC-ceeEEEEE---CCeEEEeccccccccccccccccccCeeEEEECCCCceEEeE
Q 007468 286 KVKKIGMPPGPR-AGFSMCVH---KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (602)
Q Consensus 286 ~l~~~g~~P~~R-~~~s~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~ 347 (602)
.+..... +... ...++++. ++++++.+...+ ...||.++........+.
T Consensus 299 ~~~~~~~-~~~~~~~~~~~~sp~~dg~~l~~~~~~g------------~~~l~~~~~~~~~~~~l~ 351 (706)
T 2z3z_A 299 TLFVETD-KHYVEPLHPLTFLPGSNNQFIWQSRRDG------------WNHLYLYDTTGRLIRQVT 351 (706)
T ss_dssp EEEEEEC-SSCCCCCSCCEECTTCSSEEEEEECTTS------------SCEEEEEETTSCEEEECC
T ss_pred EEEEccC-CCeECccCCceeecCCCCEEEEEEccCC------------ccEEEEEECCCCEEEecC
Confidence 6642111 0000 01122332 566555443322 355777776665555543
No 167
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=92.63 E-value=4.6 Score=38.80 Aligned_cols=186 Identities=8% Similarity=0.025 Sum_probs=87.1
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~ 159 (602)
++.+++.|+. -..|.+||+.+.......... ...-.+++.. ++.+++.|+.. ..+.
T Consensus 28 ~~~~l~s~~~---------dg~v~vw~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d-----------g~i~ 84 (313)
T 3odt_A 28 DDSKVASVSR---------DGTVRLWSKDDQWLGTVVYTG---QGFLNSVCYDSEKELLLFGGKD-----------TMIN 84 (313)
T ss_dssp ETTEEEEEET---------TSEEEEEEESSSEEEEEEEEC---SSCEEEEEEETTTTEEEEEETT-----------SCEE
T ss_pred CCCEEEEEEc---------CCcEEEEECCCCEEEEEeecC---CccEEEEEECCCCCEEEEecCC-----------CeEE
Confidence 4666777762 246888998776544332211 1112222222 45666677653 2355
Q ss_pred EEECCCCc-EEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccc
Q 007468 160 MLDLKTNQ-WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238 (602)
Q Consensus 160 ~yd~~t~~-W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~ 238 (602)
.|++.... ...+.. .......-.++.+++.+++.|+.+ ..+..||.....+... .. ..+...
T Consensus 85 ~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~~~d---------~~i~~~d~~~~~~~~~-~~-----~~~v~~ 147 (313)
T 3odt_A 85 GVPLFATSGEDPLYT--LIGHQGNVCSLSFQDGVVISGSWD---------KTAKVWKEGSLVYNLQ-AH-----NASVWD 147 (313)
T ss_dssp EEETTCCTTSCC-CE--ECCCSSCEEEEEEETTEEEEEETT---------SEEEEEETTEEEEEEE-CC-----SSCEEE
T ss_pred EEEeeecCCCCcccc--hhhcccCEEEEEecCCEEEEEeCC---------CCEEEEcCCcEEEecc-cC-----CCceeE
Confidence 66664431 111111 111122223344456666677653 3577777322222211 11 112222
Q ss_pred eeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEeccccc
Q 007468 239 FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVD 317 (602)
Q Consensus 239 ~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~GG~~~ 317 (602)
......++.+++.|+.++. +.+||..... ..+.. +....-.++++. ++. ++.|+..
T Consensus 148 ~~~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~-~~~~~----~~~~~i~~~~~~~~~~-~~~~~~d- 204 (313)
T 3odt_A 148 AKVVSFSENKFLTASADKT----------------IKLWQNDKVI-KTFSG----IHNDVVRHLAVVDDGH-FISCSND- 204 (313)
T ss_dssp EEEEETTTTEEEEEETTSC----------------EEEEETTEEE-EEECS----SCSSCEEEEEEEETTE-EEEEETT-
T ss_pred EEEccCCCCEEEEEECCCC----------------EEEEecCceE-EEEec----cCcccEEEEEEcCCCe-EEEccCC-
Confidence 2222225667777777665 6777733222 11211 112223334443 556 6666653
Q ss_pred cccccccccccccCeeEEEECCCCc
Q 007468 318 MEMKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 318 ~~~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
..|.+||+.+..
T Consensus 205 -------------g~i~i~d~~~~~ 216 (313)
T 3odt_A 205 -------------GLIKLVDMHTGD 216 (313)
T ss_dssp -------------SEEEEEETTTCC
T ss_pred -------------CeEEEEECCchh
Confidence 358899987654
No 168
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=92.59 E-value=9.9 Score=42.76 Aligned_cols=140 Identities=14% Similarity=0.157 Sum_probs=76.0
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEccc--CCCCCC
Q 007468 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL--KGCPSP 179 (602)
Q Consensus 102 dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~--~~~p~~ 179 (602)
-+++||+.+.++..... . .+..-.+++..++.|||... +.+++||+.+.++..+.. .+++..
T Consensus 83 Gl~~yd~~~~~f~~~~~-~--~~~~i~~i~~~~g~lWigt~-------------~Gl~~~~~~~~~~~~~~~~~~~l~~~ 146 (758)
T 3ott_A 83 GILVYNYRADRYEQPET-D--FPTDVRTMALQGDTLWLGAL-------------NGLYTYQLQSRKLTSFDTRRNGLPNN 146 (758)
T ss_dssp EEEEEETTTTEECCCSC-C--CCSCEEEEEEETTEEEEEET-------------TEEEEEETTTCCEEEECHHHHCCSCS
T ss_pred CeEEEeCCCCEEECccc-C--CCceEEEEEecCCcEEEEcC-------------CcceeEeCCCCeEEEeccCCCCcCCC
Confidence 57899999988764111 1 11111223334778887421 358899999988887632 112221
Q ss_pred CcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCccC
Q 007468 180 RSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSK 256 (602)
Q Consensus 180 R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~ 256 (602)
. -.+++.. ++.|||.. .+.+++|++.+..+..+....... .....-.+++.. ++.|||.- .
T Consensus 147 ~-i~~i~~d~~g~lWigt-----------~~Gl~~~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~d~~~~~lWigt--~- 210 (758)
T 3ott_A 147 T-IYSIIRTKDNQIYVGT-----------YNGLCRYIPSNGKFEGIPLPVHSS-QSNLFVNSLLEDTTRQCVWIGT--E- 210 (758)
T ss_dssp C-EEEEEECTTCCEEEEE-----------TTEEEEEETTTTEEEEECCCCCTT-CSSCCEEEEEEETTTTEEEEEE--E-
T ss_pred e-EEEEEEcCCCCEEEEe-----------CCCHhhCccCCCceEEecCCCccc-cccceeEEEEEECCCCEEEEEE--C-
Confidence 1 1122222 57788731 135889999988877654321100 011111223333 34577732 1
Q ss_pred CCCCccCCCCCCceeeeEEEEeCCCCeeEEee
Q 007468 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (602)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~ 288 (602)
.-+++||+.+.++....
T Consensus 211 ---------------~Gl~~~~~~~~~~~~~~ 227 (758)
T 3ott_A 211 ---------------GYLFQYFPSTGQIKQTE 227 (758)
T ss_dssp ---------------EEEEEEETTTTEEEEEE
T ss_pred ---------------CCCeEEcCCCCeEEecc
Confidence 23889999988887654
No 169
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=92.58 E-value=8.2 Score=37.63 Aligned_cols=176 Identities=8% Similarity=-0.000 Sum_probs=83.7
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCC-CcceecCeEEEEECCCCcEEEcccCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ-ERFHHYKDFWMLDLKTNQWEQLNLKGCP 177 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~-~~~~~~~dv~~yd~~t~~W~~~~~~~~p 177 (602)
+.|++||+.+.+++.+.......+........+ ++.||+.. ....... ........+|+|++.. +...+... ..
T Consensus 73 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~-~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~-~~ 149 (297)
T 3g4e_A 73 TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGT-MAEETAPAVLERHQGALYSLFPDH-HVKKYFDQ-VD 149 (297)
T ss_dssp TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEE-EECCSBTTBCCTTCEEEEEECTTS-CEEEEEEE-ES
T ss_pred CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEec-CCcccccccccCCCcEEEEEECCC-CEEEEeec-cc
Confidence 368999999999887654321112222222333 56777643 1111000 0001134688998753 33333210 11
Q ss_pred CCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEEC--CCCceEE---eccCCCCCCCCCccceeEEEe-CCEEE
Q 007468 178 SPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDL--DQFKWQE---IKPRFGSMWPSPRSGFQFFVY-QDEVF 249 (602)
Q Consensus 178 ~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~--~t~~W~~---v~~~~~~~~P~~R~~~~~~~~-~~~Iy 249 (602)
...+++.. ++.||+.... .+.|++|++ .+..... +...+ .....-.++++. ++.||
T Consensus 150 ---~pngi~~spdg~~lyv~~~~---------~~~i~~~~~d~~~G~~~~~~~~~~~~----~~~~~p~g~~~d~~G~lw 213 (297)
T 3g4e_A 150 ---ISNGLDWSLDHKIFYYIDSL---------SYSVDAFDYDLQTGQISNRRSVYKLE----KEEQIPDGMCIDAEGKLW 213 (297)
T ss_dssp ---BEEEEEECTTSCEEEEEEGG---------GTEEEEEEECTTTCCEEEEEEEEECC----GGGCEEEEEEEBTTSCEE
T ss_pred ---cccceEEcCCCCEEEEecCC---------CCcEEEEeccCCCCcccCcEEEEECC----CCCCCCCeeEECCCCCEE
Confidence 11233333 3468877542 356888876 4554322 11110 001111234443 67888
Q ss_pred EEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEEC---CeEEEeccc
Q 007468 250 LYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHK---KRALLFGGV 315 (602)
Q Consensus 250 v~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~---~~lyv~GG~ 315 (602)
|...... .|++||+.+.+....-.. |.. .-.++++.+ +.|||....
T Consensus 214 va~~~~~----------------~v~~~d~~tG~~~~~i~~---p~~-~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 214 VACYNGG----------------RVIRLDPVTGKRLQTVKL---PVD-KTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEEETTT----------------EEEEECTTTCCEEEEEEC---SSS-BEEEEEEESGGGCEEEEEEBC
T ss_pred EEEcCCC----------------EEEEEcCCCceEEEEEEC---CCC-CceEEEEeCCCCCEEEEEcCC
Confidence 8653322 289999987665443322 222 223333332 467776544
No 170
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=92.46 E-value=5.7 Score=44.09 Aligned_cols=103 Identities=13% Similarity=0.104 Sum_probs=55.7
Q ss_pred EEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCc
Q 007468 191 KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGI 269 (602)
Q Consensus 191 ~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~ 269 (602)
.+++.|+.+ ..|.+||+.+..-...-.. ....-.+++.. ++.+++.|+.++.
T Consensus 532 ~~l~s~s~d---------~~v~vwd~~~~~~~~~~~~------h~~~v~~v~~spdg~~l~sg~~Dg~------------ 584 (694)
T 3dm0_A 532 PTIVSASWD---------KTVKVWNLSNCKLRSTLAG------HTGYVSTVAVSPDGSLCASGGKDGV------------ 584 (694)
T ss_dssp CEEEEEETT---------SCEEEEETTTCCEEEEECC------CSSCEEEEEECTTSSEEEEEETTSB------------
T ss_pred ceEEEEeCC---------CeEEEEECCCCcEEEEEcC------CCCCEEEEEEeCCCCEEEEEeCCCe------------
Confidence 356666643 4588889877653322111 11111222333 6778888887766
Q ss_pred eeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCCce
Q 007468 270 IHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (602)
Q Consensus 270 ~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W 343 (602)
|.+||+.+.+-. ... .....-+++++..+..+++++.. +.|.+||+.+..-
T Consensus 585 ----i~iwd~~~~~~~--~~~---~~~~~v~~~~~sp~~~~l~~~~~--------------~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 585 ----VLLWDLAEGKKL--YSL---EANSVIHALCFSPNRYWLCAATE--------------HGIKIWDLESKSI 635 (694)
T ss_dssp ----CEEEETTTTEEE--ECC---BCSSCEEEEEECSSSSEEEEEET--------------TEEEEEETTTTEE
T ss_pred ----EEEEECCCCceE--EEe---cCCCcEEEEEEcCCCcEEEEEcC--------------CCEEEEECCCCCC
Confidence 778888776432 221 11223345555544445554432 3489999987643
No 171
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=92.27 E-value=10 Score=37.92 Aligned_cols=156 Identities=8% Similarity=0.063 Sum_probs=79.9
Q ss_pred EcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCC-cccE
Q 007468 107 DVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR-SGHR 184 (602)
Q Consensus 107 d~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R-~~h~ 184 (602)
.-...+|+.+.. |......+++.. .+.+|++|-. ..+++-.-...+|+.+.... +.+. ...+
T Consensus 21 ~d~g~~W~~~~~---~~~~~~~~v~~~~~~~~~~~G~~------------g~i~~s~DgG~tW~~~~~~~-~~~~~~~~~ 84 (327)
T 2xbg_A 21 ALDYNPWEAIQL---PTTATILDMSFIDRHHGWLVGVN------------ATLMETRDGGQTWEPRTLVL-DHSDYRFNS 84 (327)
T ss_dssp BCSSCCEEEEEC---SCSSCEEEEEESSSSCEEEEETT------------TEEEEESSTTSSCEECCCCC-SCCCCEEEE
T ss_pred CCCCCCceEeec---CCCCcEEEEEECCCCcEEEEcCC------------CeEEEeCCCCCCCeECCCCC-CCCCccEEE
Confidence 334568998864 222333333333 4678886531 22444333345899986421 1122 2233
Q ss_pred EEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccC
Q 007468 185 MVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKN 263 (602)
Q Consensus 185 ~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~ 263 (602)
++...+.+|+.|-. ..+++-.=.-.+|+.+.... +.+-..+.++.. .+.+|+.|.. +.
T Consensus 85 i~~~~~~~~~~g~~----------g~i~~S~DgG~tW~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~-g~------ 143 (327)
T 2xbg_A 85 VSFQGNEGWIVGEP----------PIMLHTTDGGQSWSQIPLDP----KLPGSPRLIKALGNGSAEMITNV-GA------ 143 (327)
T ss_dssp EEEETTEEEEEEET----------TEEEEESSTTSSCEECCCCT----TCSSCEEEEEEEETTEEEEEETT-CC------
T ss_pred EEecCCeEEEEECC----------CeEEEECCCCCCceECcccc----CCCCCeEEEEEECCCCEEEEeCC-cc------
Confidence 44456788887521 23444222246899986541 111112334333 7888887752 22
Q ss_pred CCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEec
Q 007468 264 QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFG 313 (602)
Q Consensus 264 ~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~G 313 (602)
+++-.=.-.+|+.+.. |.+...+++++. ++.+|++|
T Consensus 144 ----------v~~S~DgG~tW~~~~~----~~~~~~~~~~~~~~~~~~~~g 180 (327)
T 2xbg_A 144 ----------IYRTKDSGKNWQALVQ----EAIGVMRNLNRSPSGEYVAVS 180 (327)
T ss_dssp ----------EEEESSTTSSEEEEEC----SCCCCEEEEEECTTSCEEEEE
T ss_pred ----------EEEEcCCCCCCEEeec----CCCcceEEEEEcCCCcEEEEE
Confidence 4444334668999864 223344555554 45666655
No 172
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=92.18 E-value=13 Score=40.69 Aligned_cols=115 Identities=14% Similarity=0.159 Sum_probs=63.8
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCC--cEEEecCCCCC-CCce---eeEEEEECCEEEEEeCccCCCCCCccee
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSP-PPRS---AHQAVSWKNYLYIFGGEFTSPNQERFHH 154 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~--~W~~l~~~~~P-~~R~---~hs~~~~~~~iyV~GG~~~~~~~~~~~~ 154 (602)
++.|||.... +.|+++|..+. .|+.-...... .+.+ ..+.++.++.||+...
T Consensus 68 ~g~vyv~~~~----------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~------------ 125 (582)
T 1flg_A 68 DGVIYVTASY----------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL------------ 125 (582)
T ss_dssp TTEEEEEETT----------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET------------
T ss_pred CCEEEEEcCC----------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC------------
Confidence 7888887651 24999999877 48865432110 0111 1234567888887532
Q ss_pred cCeEEEEECCCC--cEEEcccCCCCCCC--cccEEEEECC------EEEEEcCccCCCCCeeeeceEEEEECCCCc--eE
Q 007468 155 YKDFWMLDLKTN--QWEQLNLKGCPSPR--SGHRMVLYKH------KIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQ 222 (602)
Q Consensus 155 ~~dv~~yd~~t~--~W~~~~~~~~p~~R--~~h~~~~~~~------~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~--W~ 222 (602)
-..++.+|..+. .|+.-.. .+... ...+-++.++ .||+ |..... ......|+.||+.+.+ |+
T Consensus 126 dg~l~AlD~~TG~~~W~~~~~--~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e---~~~~g~v~alD~~tG~~~W~ 199 (582)
T 1flg_A 126 DASVVALNKNTGKVVWKKKFA--DHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGDE---FGVVGRLFARDPDTGEEIWM 199 (582)
T ss_dssp TTEEEEEESSSCCEEEEEECS--CGGGTCBCCSCCEEEECTTTCCEEEEE-CCBCGG---GCCBCEEEEECTTTCCEEEE
T ss_pred CCEEEEEECCCCCEEeeecCC--CCCcCcccccCCEEeCCCcCCcEEEEE-eccccc---cCCCCEEEEEECCCCCEEee
Confidence 246889999887 4876432 11111 1112244455 5554 432110 0124679999998765 86
Q ss_pred E
Q 007468 223 E 223 (602)
Q Consensus 223 ~ 223 (602)
.
T Consensus 200 ~ 200 (582)
T 1flg_A 200 R 200 (582)
T ss_dssp E
T ss_pred c
Confidence 5
No 173
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=92.14 E-value=1.4 Score=45.80 Aligned_cols=92 Identities=11% Similarity=0.081 Sum_probs=45.4
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCC
Q 007468 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (602)
Q Consensus 102 dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R 180 (602)
.|.+||+.++....+..... ......++... ++.+++.|+.. ..+.+||+....-..+. ...
T Consensus 188 ~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~~d-----------g~i~~wd~~~~~~~~~~-----~h~ 250 (435)
T 4e54_B 188 TTRLQDFKGNILRVFASSDT-INIWFCSLDVSASSRMVVTGDNV-----------GNVILLNMDGKELWNLR-----MHK 250 (435)
T ss_dssp CEEEEETTSCEEEEEECCSS-CSCCCCCEEEETTTTEEEEECSS-----------SBEEEEESSSCBCCCSB-----CCS
T ss_pred EEEEeeccCCceeEEeccCC-CCccEEEEEECCCCCEEEEEeCC-----------CcEeeeccCcceeEEEe-----ccc
Confidence 46677877766655543221 11111222222 56677777653 35778888654321111 111
Q ss_pred cccEEEEE---CCEEEEEcCccCCCCCeeeeceEEEEECCCC
Q 007468 181 SGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (602)
Q Consensus 181 ~~h~~~~~---~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~ 219 (602)
..-.++.+ +..+++.|+.+. .|.+||+.+.
T Consensus 251 ~~v~~v~~~p~~~~~~~s~s~d~---------~v~iwd~~~~ 283 (435)
T 4e54_B 251 KKVTHVALNPCCDWFLATASVDQ---------TVKIWDLRQV 283 (435)
T ss_dssp SCEEEEEECTTCSSEEEEEETTS---------BCCEEETTTC
T ss_pred ceEEeeeecCCCceEEEEecCcc---------eeeEEecccc
Confidence 11122333 345777777543 4667787664
No 174
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=92.11 E-value=5.5 Score=38.87 Aligned_cols=181 Identities=8% Similarity=-0.037 Sum_probs=91.7
Q ss_pred cceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCC-cEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCC
Q 007468 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ-EWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSP 147 (602)
Q Consensus 70 ~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~-~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~ 147 (602)
..|.+.+.| +++||+.+. +.|++||+... .|+.-. +.....+++..+ ++.++|.....
T Consensus 38 ~~~~~~~~p--dG~ilvs~~-----------~~V~~~d~~G~~~W~~~~----~~~~~~~~~~~~~dG~~lv~~~~~--- 97 (276)
T 3no2_A 38 ECNSVAATK--AGEILFSYS-----------KGAKMITRDGRELWNIAA----PAGCEMQTARILPDGNALVAWCGH--- 97 (276)
T ss_dssp CCCEEEECT--TSCEEEECB-----------SEEEEECTTSCEEEEEEC----CTTCEEEEEEECTTSCEEEEEEST---
T ss_pred CCcCeEECC--CCCEEEeCC-----------CCEEEECCCCCEEEEEcC----CCCccccccEECCCCCEEEEecCC---
Confidence 345666666 778888332 35899999332 466442 112233444444 45555553310
Q ss_pred CCCcceecCeEEEEECCCC-cEEEcccCCCCC--CCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCC-CceEE
Q 007468 148 NQERFHHYKDFWMLDLKTN-QWEQLNLKGCPS--PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQE 223 (602)
Q Consensus 148 ~~~~~~~~~dv~~yd~~t~-~W~~~~~~~~p~--~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t-~~W~~ 223 (602)
...++.||+... .|+.......+. ..........++.+++.... ...|.+||+.- ..|+.
T Consensus 98 -------~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~---------~~~v~~~d~~G~~~w~~ 161 (276)
T 3no2_A 98 -------PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA---------TSEVREIAPNGQLLNSV 161 (276)
T ss_dssp -------TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT---------TTEEEEECTTSCEEEEE
T ss_pred -------CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC---------CCEEEEECCCCCEEEEE
Confidence 135777887544 244321111111 11122233345555554331 25689999873 23664
Q ss_pred eccCCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCC--eeEEeecCCCCCCCCc--
Q 007468 224 IKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRA-- 298 (602)
Q Consensus 224 v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g~~P~~R~-- 298 (602)
-... .+ +++... ++.++|.+..... ++.||+.+. .|+.-... .+..|.
T Consensus 162 ~~~~------~~---~~~~~~~~g~~~v~~~~~~~----------------v~~~d~~tG~~~w~~~~~~--~~~~~l~~ 214 (276)
T 3no2_A 162 KLSG------TP---FSSAFLDNGDCLVACGDAHC----------------FVQLNLESNRIVRRVNAND--IEGVQLFF 214 (276)
T ss_dssp ECSS------CC---CEEEECTTSCEEEECBTTSE----------------EEEECTTTCCEEEEEEGGG--SBSCCCSE
T ss_pred ECCC------Cc---cceeEcCCCCEEEEeCCCCe----------------EEEEeCcCCcEEEEecCCC--CCCccccc
Confidence 3321 11 223334 7788887765433 889998844 57765321 122222
Q ss_pred eeEEEEE-CCeEEEec
Q 007468 299 GFSMCVH-KKRALLFG 313 (602)
Q Consensus 299 ~~s~~~~-~~~lyv~G 313 (602)
-.++++. ++.+||..
T Consensus 215 ~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 215 VAQLFPLQNGGLYICN 230 (276)
T ss_dssp EEEEEECTTSCEEEEE
T ss_pred cccceEcCCCCEEEEe
Confidence 2233443 78888875
No 175
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.09 E-value=2.3 Score=42.88 Aligned_cols=212 Identities=9% Similarity=0.075 Sum_probs=98.2
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCE-EEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNY-LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~-iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~ 178 (602)
..|+.+|+.+.....+... .....+....- ++. |++... ... . .....+|++|+.+..+..+.. ..
T Consensus 168 ~~l~~~d~~~g~~~~~~~~---~~~~~~~~~sp~dg~~l~~~~~-~~~-~----~~~~~l~~~d~~~~~~~~l~~---~~ 235 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIHQD---TAWLGHPIYRPFDDSTVGFCHE-GPH-D----LVDARMWLVNEDGSNVRKIKE---HA 235 (396)
T ss_dssp EEEEEEETTTCCEEEEEEE---SSCEEEEEEETTEEEEEEEEEC-SCS-S----SCSCCCEEEETTSCCCEESSC---CC
T ss_pred ceEEEEECCCCcEEeeccC---CcccccceECCCCCCEEEEEec-CCC-C----CCCceEEEEECCCCceeEeec---cC
Confidence 4789999999888776531 12222222222 243 444432 111 0 112579999998888777654 11
Q ss_pred CCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCcc
Q 007468 179 PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYS 255 (602)
Q Consensus 179 ~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~ 255 (602)
+......+.+ +++.+++....... ....+++||+.+.....+... +. .. ....- +++++++.+..
T Consensus 236 ~~~~~~~~~~spdg~~l~~~~~~~~~----~~~~l~~~d~~~g~~~~l~~~-----~~--~~-~~~s~~dg~~l~~~~~~ 303 (396)
T 3c5m_A 236 EGESCTHEFWIPDGSAMAYVSYFKGQ----TDRVIYKANPETLENEEVMVM-----PP--CS-HLMSNFDGSLMVGDGCD 303 (396)
T ss_dssp TTEEEEEEEECTTSSCEEEEEEETTT----CCEEEEEECTTTCCEEEEEEC-----CS--EE-EEEECSSSSEEEEEECC
T ss_pred CCccccceEECCCCCEEEEEecCCCC----ccceEEEEECCCCCeEEeeeC-----CC--CC-CCccCCCCceEEEecCC
Confidence 1111222233 44433343322111 123499999998887777654 21 11 22222 56666654421
Q ss_pred CCCCCccC-CCCCCceeeeEEEEeCCCCeeEEeecCCCCC------CCCceeEEEEE-CCeEEEeccccccccccccccc
Q 007468 256 KEVSTDKN-QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP------GPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMS 327 (602)
Q Consensus 256 ~~~~~~~~-~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P------~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~ 327 (602)
....... ......-...++++|+.+.....+....... ........++. +++.++|.....
T Consensus 304 -~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~---------- 372 (396)
T 3c5m_A 304 -APVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFE---------- 372 (396)
T ss_dssp -C----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT----------
T ss_pred -cceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCC----------
Confidence 1000000 0000012356999999888776665421100 00001112222 444444443221
Q ss_pred cccCeeEEEECCCCceEEeEe
Q 007468 328 LFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 328 ~~~ndv~~yd~~t~~W~~l~~ 348 (602)
-...||.+++.+..++.+..
T Consensus 373 -~~~~l~~~~~~~~~~~~~~~ 392 (396)
T 3c5m_A 373 -GVPAIYIADVPESYKHLEHH 392 (396)
T ss_dssp -SSCEEEEEECCTTCC-----
T ss_pred -CCceEEEEEEcccccccccc
Confidence 12469999998888776543
No 176
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=92.01 E-value=9.9 Score=37.30 Aligned_cols=139 Identities=7% Similarity=0.055 Sum_probs=72.2
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCc---EEEccc--CC
Q 007468 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ---WEQLNL--KG 175 (602)
Q Consensus 102 dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~---W~~~~~--~~ 175 (602)
.+++|++.+.+...+... |..+.....+.. ++.+|+.-- ....+|++|+.+.. |..-.. ..
T Consensus 96 ~v~~~d~~~g~~~~~~~~--~~~~~~~g~~~~~~~~~~v~d~-----------~~g~i~~~d~~~~~~~v~~~~~~~~~~ 162 (306)
T 2p4o_A 96 PVVSLVKSDGTVETLLTL--PDAIFLNGITPLSDTQYLTADS-----------YRGAIWLIDVVQPSGSIWLEHPMLARS 162 (306)
T ss_dssp EEEEEECTTSCEEEEEEC--TTCSCEEEEEESSSSEEEEEET-----------TTTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred eEEEEcCCCCeEEEEEeC--CCccccCcccccCCCcEEEEEC-----------CCCeEEEEeCCCCcEeEEEECCccccc
Confidence 488899888888766542 334444444433 456777531 12578999987652 211110 00
Q ss_pred CCCC--CcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCC-Cce---EEeccCCCCCCCCCccceeEEEe-CCEE
Q 007468 176 CPSP--RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKW---QEIKPRFGSMWPSPRSGFQFFVY-QDEV 248 (602)
Q Consensus 176 ~p~~--R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t-~~W---~~v~~~~~~~~P~~R~~~~~~~~-~~~I 248 (602)
.+.. ....++..-++.||+.-- ..+.|++|++.. ... ..+... ..| ..+++. ++.|
T Consensus 163 ~~~~~~~~pngis~dg~~lyv~d~---------~~~~I~~~~~~~~g~~~~~~~~~~~-----~~P---~gi~vd~dG~l 225 (306)
T 2p4o_A 163 NSESVFPAANGLKRFGNFLYVSNT---------EKMLLLRIPVDSTDKPGEPEIFVEQ-----TNI---DDFAFDVEGNL 225 (306)
T ss_dssp STTCCSCSEEEEEEETTEEEEEET---------TTTEEEEEEBCTTSCBCCCEEEEES-----CCC---SSEEEBTTCCE
T ss_pred cccCCCCcCCCcCcCCCEEEEEeC---------CCCEEEEEEeCCCCCCCccEEEecc-----CCC---CCeEECCCCCE
Confidence 0111 112233333568887632 246799999865 221 111111 112 224444 6788
Q ss_pred EEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe
Q 007468 249 FLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (602)
Q Consensus 249 yv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l 287 (602)
||.-.... .|.+|++. .+...+
T Consensus 226 ~va~~~~~----------------~V~~~~~~-G~~~~~ 247 (306)
T 2p4o_A 226 YGATHIYN----------------SVVRIAPD-RSTTII 247 (306)
T ss_dssp EEECBTTC----------------CEEEECTT-CCEEEE
T ss_pred EEEeCCCC----------------eEEEECCC-CCEEEE
Confidence 88754333 38899986 344333
No 177
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=91.92 E-value=9.4 Score=36.82 Aligned_cols=29 Identities=7% Similarity=0.020 Sum_probs=20.1
Q ss_pred CCeEEEeccccccccccccccccccCeeEEEECCCC-ceEEeEe
Q 007468 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH-RWYPLEL 348 (602)
Q Consensus 306 ~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~-~W~~l~~ 348 (602)
++++++.||.+ ..|.+|++.+. .|..+..
T Consensus 317 ~~~~l~s~~~d--------------g~v~iw~~~~~~~~~~~~~ 346 (351)
T 3f3f_A 317 TGTILSSAGDD--------------GKVRLWKATYSNEFKCMSV 346 (351)
T ss_dssp SSCCEEEEETT--------------SCEEEEEECTTSCEEEEEE
T ss_pred CCCEEEEecCC--------------CcEEEEecCcCcchhheee
Confidence 56677777754 34888888764 6777665
No 178
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=91.89 E-value=1 Score=53.77 Aligned_cols=187 Identities=9% Similarity=0.015 Sum_probs=94.5
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~ 160 (602)
++..+++|+. ...+++|+..+.......... .......+..-++..++.|+.+ ..+.+
T Consensus 972 ~g~~l~~g~~---------~g~i~i~d~~~~~~~~~~~~h--~~~v~~l~~s~dg~~l~s~~~d-----------g~i~v 1029 (1249)
T 3sfz_A 972 HLEYVAFGDE---------DGAIKIIELPNNRVFSSGVGH--KKAVRHIQFTADGKTLISSSED-----------SVIQV 1029 (1249)
T ss_dssp TSSEEEEEET---------TSCCEEEETTTTSCEEECCCC--SSCCCCEEECSSSSCEEEECSS-----------SBEEE
T ss_pred CCCEEEEEcC---------CCCEEEEEcCCCceeeecccC--CCceEEEEECCCCCEEEEEcCC-----------CEEEE
Confidence 5666777762 246788898877654332211 1111111222255666677643 35888
Q ss_pred EECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCcccee
Q 007468 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (602)
Q Consensus 161 yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~ 240 (602)
||+.+.....+.. ....-.+++...+..++.|+.+ ..+.+||+.+..-...-.. ..... .+
T Consensus 1030 wd~~~~~~~~~~~----~~~~v~~~~~~~~~~l~~~~~d---------g~v~vwd~~~~~~~~~~~~-----~~~~v-~~ 1090 (1249)
T 3sfz_A 1030 WNWQTGDYVFLQA----HQETVKDFRLLQDSRLLSWSFD---------GTVKVWNVITGRIERDFTC-----HQGTV-LS 1090 (1249)
T ss_dssp EETTTTEEECCBC----CSSCEEEEEECSSSEEEEEESS---------SEEEEEETTTTCCCEEEEC-----CSSCC-CC
T ss_pred EECCCCceEEEec----CCCcEEEEEEcCCCcEEEEECC---------CcEEEEECCCCceeEEEcc-----cCCcE-EE
Confidence 9999887664332 1111222333333344555542 4688899887653322211 11111 12
Q ss_pred EEE-eCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEecccccc
Q 007468 241 FFV-YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDM 318 (602)
Q Consensus 241 ~~~-~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~GG~~~~ 318 (602)
++. -++.+++.|+.++. +.+||+.+.. .+.... .....-.++++. ++++++.|+.++
T Consensus 1091 ~~~s~d~~~l~s~s~d~~----------------v~iwd~~~~~--~~~~l~--~h~~~v~~~~~s~dg~~lat~~~dg- 1149 (1249)
T 3sfz_A 1091 CAISSDATKFSSTSADKT----------------AKIWSFDLLS--PLHELK--GHNGCVRCSAFSLDGILLATGDDNG- 1149 (1249)
T ss_dssp EEECSSSSSCEEECCSSC----------------CCEECSSSSS--CSBCCC--CCSSCEEEEEECSSSSEEEEEETTS-
T ss_pred EEECCCCCEEEEEcCCCc----------------EEEEECCCcc--eeeeec--cCCCcEEEEEECCCCCEEEEEeCCC-
Confidence 222 26667777777655 5567765443 111110 011111223332 677888887543
Q ss_pred ccccccccccccCeeEEEECCCCc
Q 007468 319 EMKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 319 ~~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
.|.+||+.+..
T Consensus 1150 -------------~i~vwd~~~~~ 1160 (1249)
T 3sfz_A 1150 -------------EIRIWNVSDGQ 1160 (1249)
T ss_dssp -------------CCCEEESSSSC
T ss_pred -------------EEEEEECCCCc
Confidence 47888887754
No 179
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=91.84 E-value=3.4 Score=44.39 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=18.3
Q ss_pred eEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCC
Q 007468 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ 111 (602)
Q Consensus 72 ~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~ 111 (602)
.++.+.| +++++++|+ + +.+.+||+.+.
T Consensus 22 ~~~~~sp--dg~~l~~~~----~------~~v~v~~~~~~ 49 (615)
T 1pgu_A 22 THLSYDP--TTNAIAYPC----G------KSAFVRCLDDG 49 (615)
T ss_dssp CCCEEET--TTTEEEEEE----T------TEEEEEECCSS
T ss_pred eEEEECC--CCCEEEEec----C------CeEEEEECCCC
Confidence 3445555 567777776 1 36888998866
No 180
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=91.78 E-value=5.3 Score=44.53 Aligned_cols=151 Identities=11% Similarity=0.019 Sum_probs=78.9
Q ss_pred cCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCc---eEEeccCCCCC
Q 007468 155 YKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK---WQEIKPRFGSM 231 (602)
Q Consensus 155 ~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~---W~~v~~~~~~~ 231 (602)
.+.+|.++..+..|..+... ... ....+..++.||+...... ....|+++|+.+.. |+.+.+..
T Consensus 251 ~~~l~~~~~~~~~~~~l~~~---~~~-~~~~~~~~g~l~~~s~~~~------~~~~l~~~d~~~~~~~~~~~l~~~~--- 317 (695)
T 2bkl_A 251 ENDVYWKRPGEKDFRLLVKG---VGA-KYEVHAWKDRFYVLTDEGA------PRQRVFEVDPAKPARASWKEIVPED--- 317 (695)
T ss_dssp EEEEEEECTTCSSCEEEEEC---SSC-CEEEEEETTEEEEEECTTC------TTCEEEEEBTTBCSGGGCEEEECCC---
T ss_pred ceEEEEEcCCCCceEEeecC---CCc-eEEEEecCCcEEEEECCCC------CCCEEEEEeCCCCCccCCeEEecCC---
Confidence 35788888877788877651 111 1222224555666544321 13578999987755 88876541
Q ss_pred CCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEE
Q 007468 232 WPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRAL 310 (602)
Q Consensus 232 ~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~ly 310 (602)
+ ...-..++..++.|++....++ ...+|.+++....-..+.. |....-.++... ++..+
T Consensus 318 -~-~~~l~~~~~~~~~lv~~~~~dg--------------~~~l~~~~~~g~~~~~l~~----~~~~~v~~~~~s~d~~~l 377 (695)
T 2bkl_A 318 -S-SASLLSVSIVGGHLSLEYLKDA--------------TSEVRVATLKGKPVRTVQL----PGVGAASNLMGLEDLDDA 377 (695)
T ss_dssp -S-SCEEEEEEEETTEEEEEEEETT--------------EEEEEEEETTCCEEEECCC----SSSSEECCCBSCTTCSEE
T ss_pred -C-CCeEEEEEEECCEEEEEEEECC--------------EEEEEEEeCCCCeeEEecC----CCCeEEEEeecCCCCCEE
Confidence 1 1112233444888887765543 2458888875543333321 111111111111 23333
Q ss_pred EeccccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 311 LFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 311 v~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
+|..... ..-..||.||+.+.....+..
T Consensus 378 ~~~~ss~----------~~P~~v~~~d~~~g~~~~l~~ 405 (695)
T 2bkl_A 378 YYVFTSF----------TTPRQIYKTSVSTGKSELWAK 405 (695)
T ss_dssp EEEEEET----------TEEEEEEEEETTTCCEEEEEE
T ss_pred EEEEcCC----------CCCCEEEEEECCCCcEEEEec
Confidence 3332221 123579999998888766553
No 181
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=91.77 E-value=4.6 Score=43.29 Aligned_cols=150 Identities=9% Similarity=-0.033 Sum_probs=75.4
Q ss_pred EEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCC-CcccEEEEE--C-CEEEEEcCccCCCCCeeeeceEE
Q 007468 137 LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP-RSGHRMVLY--K-HKIIVFGGFYDTLREVRYYNDLY 212 (602)
Q Consensus 137 iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~-R~~h~~~~~--~-~~Lyv~GG~~~~~~~~~~~~~v~ 212 (602)
+++.|+.. ..+.+||+.+.+-...-. .... .....++.+ + +.+++.|+.+ ..+.
T Consensus 175 ~l~~~~~d-----------~~v~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~ 232 (615)
T 1pgu_A 175 RSMTVGDD-----------GSVVFYQGPPFKFSASDR--THHKQGSFVRDVEFSPDSGEFVITVGSD---------RKIS 232 (615)
T ss_dssp EEEEEETT-----------TEEEEEETTTBEEEEEEC--SSSCTTCCEEEEEECSTTCCEEEEEETT---------CCEE
T ss_pred EEEEEeCC-----------CcEEEEeCCCcceeeeec--ccCCCCceEEEEEECCCCCCEEEEEeCC---------CeEE
Confidence 66666642 457788887665432211 1111 002223333 4 6677777753 4688
Q ss_pred EEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCC
Q 007468 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM 292 (602)
Q Consensus 213 ~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~ 292 (602)
+||+.+......-..+......+.. +++..++.+++.|+.++. +.+||+.+..-...-....
T Consensus 233 vwd~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~l~~~~~d~~----------------i~~wd~~~~~~~~~~~~~~ 294 (615)
T 1pgu_A 233 CFDGKSGEFLKYIEDDQEPVQGGIF--ALSWLDSQKFATVGADAT----------------IRVWDVTTSKCVQKWTLDK 294 (615)
T ss_dssp EEETTTCCEEEECCBTTBCCCSCEE--EEEESSSSEEEEEETTSE----------------EEEEETTTTEEEEEEECCT
T ss_pred EEECCCCCEeEEecccccccCCceE--EEEEcCCCEEEEEcCCCc----------------EEEEECCCCcEEEEEcCCC
Confidence 8998876644332110000011111 222226777777776654 7888988765444322211
Q ss_pred CCCCCceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCC
Q 007468 293 PPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (602)
Q Consensus 293 ~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t 340 (602)
.+......+++..++..++.|+.. ..|.+||+.+
T Consensus 295 ~~~~~~~~~~~~~~~~~l~~~~~~--------------g~i~~~d~~~ 328 (615)
T 1pgu_A 295 QQLGNQQVGVVATGNGRIISLSLD--------------GTLNFYELGH 328 (615)
T ss_dssp TCGGGCEEEEEEEETTEEEEEETT--------------SCEEEEETTE
T ss_pred CcccCceeEEEeCCCCeEEEEECC--------------CCEEEEECCC
Confidence 111122233333366666777653 3477787765
No 182
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=91.77 E-value=7.3 Score=43.54 Aligned_cols=123 Identities=16% Similarity=0.115 Sum_probs=71.3
Q ss_pred EEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCC--cEEEcccCCC---CCC---CcccEEEEECCEEEEEcCccCC
Q 007468 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKGC---PSP---RSGHRMVLYKHKIIVFGGFYDT 201 (602)
Q Consensus 130 ~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~~~~~~~~---p~~---R~~h~~~~~~~~Lyv~GG~~~~ 201 (602)
-++.++.||+.... +.++.||..+. .|+.-..... +.. ....+.++.+++||+...
T Consensus 73 P~v~~g~vyv~~~~------------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~---- 136 (677)
T 1kb0_A 73 PVVVDGIMYVSASW------------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW---- 136 (677)
T ss_dssp CEEETTEEEEECGG------------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT----
T ss_pred CEEECCEEEEECCC------------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC----
Confidence 35679999988652 45889998887 4876543110 000 112244567888887632
Q ss_pred CCCeeeeceEEEEECCCCc--eEEecc-CCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEe
Q 007468 202 LREVRYYNDLYVFDLDQFK--WQEIKP-RFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD 278 (602)
Q Consensus 202 ~~~~~~~~~v~~yd~~t~~--W~~v~~-~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd 278 (602)
-..|+++|..+.+ |+.-.. ... .......+.++.++.||+..+.... .....|+.||
T Consensus 137 ------dg~l~alD~~tG~~~W~~~~~~~~~---~~~~~~~~p~v~~~~v~v~~~~~~~-----------~~~g~v~a~D 196 (677)
T 1kb0_A 137 ------DGRLIALDAATGKEVWHQNTFEGQK---GSLTITGAPRVFKGKVIIGNGGAEY-----------GVRGYITAYD 196 (677)
T ss_dssp ------TSEEEEEETTTCCEEEEEETTTTCC---SSCBCCSCCEEETTEEEECCBCTTT-----------CCBCEEEEEE
T ss_pred ------CCEEEEEECCCCCEEeeecCCcCcC---cCcccccCcEEECCEEEEEeccccc-----------CCCCEEEEEE
Confidence 2469999998765 887543 100 0011122334558888775432111 1235589999
Q ss_pred CCCC--eeEEee
Q 007468 279 PRTW--EWSKVK 288 (602)
Q Consensus 279 ~~t~--~W~~l~ 288 (602)
+.+. .|+.-.
T Consensus 197 ~~tG~~~W~~~~ 208 (677)
T 1kb0_A 197 AETGERKWRWFS 208 (677)
T ss_dssp TTTCCEEEEEES
T ss_pred CCCCcEEEEecc
Confidence 8765 587754
No 183
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=91.76 E-value=7.8 Score=43.64 Aligned_cols=111 Identities=11% Similarity=0.080 Sum_probs=64.7
Q ss_pred CCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeE
Q 007468 80 KETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDF 158 (602)
Q Consensus 80 ~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv 158 (602)
.++.|+|+||. .+-+++||+.++++..+.....+......+++.- ++.||+-. . .-+
T Consensus 481 ~~g~lWi~~~t---------~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~------------~Gl 538 (758)
T 3ott_A 481 NEGNVWVLLYN---------NKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-H------------GGV 538 (758)
T ss_dssp TTSCEEEEETT---------CSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-T------------TEE
T ss_pred CCCCEEEEccC---------CCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-c------------Cce
Confidence 36788887662 2468999999999998753221111112222222 46788642 1 348
Q ss_pred EEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEe
Q 007468 159 WMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (602)
Q Consensus 159 ~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v 224 (602)
.+||+.+.++......++|.. .-++++.-++.|++-.. +.+.+||+.+.+....
T Consensus 539 ~~~~~~~~~~~~~~~~gl~~~-~i~~i~~~~g~lWi~t~-----------~Gl~~~~~~~~~~~~~ 592 (758)
T 3ott_A 539 MRINPKDESQQSISFGSFSNN-EILSMTCVKNSIWVSTT-----------NGLWIIDRKTMDARQQ 592 (758)
T ss_dssp EEECC--CCCCBCCCCC---C-CEEEEEEETTEEEEEES-----------SCEEEEETTTCCEEEC
T ss_pred EEEecCCCceEEecccCCCcc-ceEEEEECCCCEEEECC-----------CCeEEEcCCCceeEEe
Confidence 899999888776643334432 22334444778887532 4689999998877654
No 184
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=91.72 E-value=3 Score=46.54 Aligned_cols=127 Identities=16% Similarity=0.232 Sum_probs=67.6
Q ss_pred CcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCC----------------c----eee
Q 007468 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPP----------------R----SAH 128 (602)
Q Consensus 69 R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~----------------R----~~h 128 (602)
+.-..+.+.| +++.+++++.. ++.. ....|+++|+.+.+...+.......+ | ...
T Consensus 37 ~~~~~~~~Sp--dG~~la~~~~~-d~~~--~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 111 (741)
T 2ecf_A 37 PTLMKPKVAP--DGSRVTFLRGK-DSDR--NQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGI 111 (741)
T ss_dssp CCCEEEEECT--TSSEEEEEECC-SSCT--TEEEEEEEETTTCCEEEEECGGGTC--------------------CCEES
T ss_pred CCCCCceEec--CCCEEEEEecc-CCCC--cccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCc
Confidence 3344555665 67766666531 1111 23489999999998887654221010 0 111
Q ss_pred EEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCC---cEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCC
Q 007468 129 QAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN---QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDT 201 (602)
Q Consensus 129 s~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~---~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~ 201 (602)
..+.+ +++.++++.. ..++++|+.+. .-..+.. . . .....+.+ +++.++|+..
T Consensus 112 ~~~~~SpDg~~l~~~~~------------~~i~~~d~~~~~~~~~~~l~~---~-~-~~~~~~~~SPDG~~la~~~~--- 171 (741)
T 2ecf_A 112 VDYQWSPDAQRLLFPLG------------GELYLYDLKQEGKAAVRQLTH---G-E-GFATDAKLSPKGGFVSFIRG--- 171 (741)
T ss_dssp CCCEECTTSSEEEEEET------------TEEEEEESSSCSTTSCCBCCC---S-S-SCEEEEEECTTSSEEEEEET---
T ss_pred ceeEECCCCCEEEEEeC------------CcEEEEECCCCCcceEEEccc---C-C-cccccccCCCCCCEEEEEeC---
Confidence 12222 4444444432 46899999887 4433322 1 1 11222333 5555555431
Q ss_pred CCCeeeeceEEEEECCCCceEEeccC
Q 007468 202 LREVRYYNDLYVFDLDQFKWQEIKPR 227 (602)
Q Consensus 202 ~~~~~~~~~v~~yd~~t~~W~~v~~~ 227 (602)
+.|+++|+.+.....+...
T Consensus 172 -------~~i~~~d~~~g~~~~~~~~ 190 (741)
T 2ecf_A 172 -------RNLWVIDLASGRQMQLTAD 190 (741)
T ss_dssp -------TEEEEEETTTTEEEECCCC
T ss_pred -------CcEEEEecCCCCEEEeccC
Confidence 3799999998877766543
No 185
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=91.70 E-value=10 Score=38.73 Aligned_cols=152 Identities=11% Similarity=0.020 Sum_probs=79.0
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceE
Q 007468 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (602)
Q Consensus 134 ~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v 211 (602)
++.+++.|+.. ..+.+||+.+.+-...-. .+.....-.++.+ ++.+++.|+.+ ..+
T Consensus 181 ~~~~l~~~~~d-----------~~i~iwd~~~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~~~d---------g~i 238 (437)
T 3gre_A 181 EKSLLVALTNL-----------SRVIIFDIRTLERLQIIE--NSPRHGAVSSICIDEECCVLILGTTR---------GII 238 (437)
T ss_dssp SCEEEEEEETT-----------SEEEEEETTTCCEEEEEE--CCGGGCCEEEEEECTTSCEEEEEETT---------SCE
T ss_pred CCCEEEEEeCC-----------CeEEEEeCCCCeeeEEEc--cCCCCCceEEEEECCCCCEEEEEcCC---------CeE
Confidence 36677777653 468899998875432211 1111112223333 56777777754 358
Q ss_pred EEEECCCCceEEeccCCCCCCCCCccceeEEEe-----CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEE
Q 007468 212 YVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-----QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (602)
Q Consensus 212 ~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-----~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (602)
.+||+.+......-.. +....-.+++.. ++.+++.|+.++. +.+||+.+..-..
T Consensus 239 ~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~----------------i~iwd~~~~~~~~ 297 (437)
T 3gre_A 239 DIWDIRFNVLIRSWSF-----GDHAPITHVEVCQFYGKNSVIVVGGSSKTF----------------LTIWNFVKGHCQY 297 (437)
T ss_dssp EEEETTTTEEEEEEBC-----TTCEEEEEEEECTTTCTTEEEEEEESTTEE----------------EEEEETTTTEEEE
T ss_pred EEEEcCCccEEEEEec-----CCCCceEEEEeccccCCCccEEEEEcCCCc----------------EEEEEcCCCcEEE
Confidence 8899987654332121 111111112111 3556666666544 7788877654222
Q ss_pred eecC--CC------CC--------------CCCceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCCc
Q 007468 287 VKKI--GM------PP--------------GPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 287 l~~~--g~------~P--------------~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
.-.. +. .| ....-.++++.++.+++.||.+ ..|.+||+.+.+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d--------------~~i~~wd~~~~~ 361 (437)
T 3gre_A 298 AFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEAT--------------SSIVMFSLNELS 361 (437)
T ss_dssp EEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGG--------------TEEEEEETTCGG
T ss_pred EEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCC--------------CeEEEEECCCcc
Confidence 2110 00 01 1111234455577888888864 358999988764
No 186
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=91.70 E-value=3.2 Score=42.06 Aligned_cols=206 Identities=12% Similarity=0.022 Sum_probs=96.7
Q ss_pred EEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCC----C-cEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccC
Q 007468 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK----Q-EWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFT 145 (602)
Q Consensus 73 s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~----~-~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~ 145 (602)
++.+.| ++.+++.|+. -..+.+||+.+ . .-..+.. ....-.+++.. ++.+++.|+..
T Consensus 72 ~~~~s~--~~~~l~~~~~---------dg~v~vw~~~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~l~s~~~d- 135 (416)
T 2pm9_A 72 DLDWSH--NNKIIAGALD---------NGSLELYSTNEANNAINSMARFSN----HSSSVKTVKFNAKQDNVLASGGNN- 135 (416)
T ss_dssp EEEECS--SSSCEEEEES---------SSCEEEECCSSTTSCCCEEEECCC----SSSCCCEEEECSSSTTBEEEECSS-
T ss_pred EEEECC--CCCeEEEEcc---------CCeEEEeecccccccccchhhccC----CccceEEEEEcCCCCCEEEEEcCC-
Confidence 344444 5667777762 24678888876 2 2222221 11111222332 25677777653
Q ss_pred CCCCCcceecCeEEEEECCCCc------EEEcccCCCCCCCcccEEEEE--C-CEEEEEcCccCCCCCeeeeceEEEEEC
Q 007468 146 SPNQERFHHYKDFWMLDLKTNQ------WEQLNLKGCPSPRSGHRMVLY--K-HKIIVFGGFYDTLREVRYYNDLYVFDL 216 (602)
Q Consensus 146 ~~~~~~~~~~~dv~~yd~~t~~------W~~~~~~~~p~~R~~h~~~~~--~-~~Lyv~GG~~~~~~~~~~~~~v~~yd~ 216 (602)
..+.+||+.+.. -..... ..........++.+ + +.+++.|+.+ ..+.+||+
T Consensus 136 ----------g~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~v~iwd~ 195 (416)
T 2pm9_A 136 ----------GEIFIWDMNKCTESPSNYTPLTPG-QSMSSVDEVISLAWNQSLAHVFASAGSS---------NFASIWDL 195 (416)
T ss_dssp ----------SCEEBCBTTTTSSCTTTCCCBCCC-CSCCSSCCCCEEEECSSCTTEEEEESSS---------SCEEEEET
T ss_pred ----------CeEEEEECCCCccccccccccccc-cccCCCCCeeEEEeCCCCCcEEEEEcCC---------CCEEEEEC
Confidence 347788887764 111100 01111111122333 2 5677777753 45889999
Q ss_pred CCCceEEeccCCCCCCCCCccceeEEEe-C-CEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCC
Q 007468 217 DQFKWQEIKPRFGSMWPSPRSGFQFFVY-Q-DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP 294 (602)
Q Consensus 217 ~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~-~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 294 (602)
.+......-............-.+++.. + ..+++.|+.++. ...+.+||+.+..- .+.... ..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-------------~~~i~~~d~~~~~~-~~~~~~-~~ 260 (416)
T 2pm9_A 196 KAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN-------------DPSILIWDLRNANT-PLQTLN-QG 260 (416)
T ss_dssp TTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS-------------SCCCCEEETTSTTS-CSBCCC-SC
T ss_pred CCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC-------------CceEEEEeCCCCCC-CcEEee-cC
Confidence 8875443322210000001112223333 3 357777776541 01266788765421 011100 00
Q ss_pred CCCceeEEEEE--CCeEEEeccccccccccccccccccCeeEEEECCCCce
Q 007468 295 GPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (602)
Q Consensus 295 ~~R~~~s~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W 343 (602)
....-.++++. ++.+++.|+.+ ..|.+||+.+.+-
T Consensus 261 ~~~~v~~~~~s~~~~~~l~s~~~d--------------g~v~~wd~~~~~~ 297 (416)
T 2pm9_A 261 HQKGILSLDWCHQDEHLLLSSGRD--------------NTVLLWNPESAEQ 297 (416)
T ss_dssp CSSCEEEEEECSSCSSCEEEEESS--------------SEEEEECSSSCCE
T ss_pred ccCceeEEEeCCCCCCeEEEEeCC--------------CCEEEeeCCCCcc
Confidence 11222334443 56777777754 3488888877643
No 187
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=91.62 E-value=2.9 Score=41.31 Aligned_cols=29 Identities=10% Similarity=0.185 Sum_probs=19.8
Q ss_pred CCeEEEeccccccccccccccccccCeeEEEECC-CCceEEeEe
Q 007468 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD-NHRWYPLEL 348 (602)
Q Consensus 306 ~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~-t~~W~~l~~ 348 (602)
++.+++.||.++ .|.+|++. ...|..+..
T Consensus 273 ~g~~las~~~D~--------------~v~lw~~~~~g~~~~~~~ 302 (316)
T 3bg1_A 273 TANILAVSGGDN--------------KVTLWKESVDGQWVCISD 302 (316)
T ss_dssp TTCCEEEEESSS--------------CEEEEEECTTSCEEEEEE
T ss_pred CCCEEEEEcCCC--------------eEEEEEECCCCcEEEeee
Confidence 567777777543 47777765 568988776
No 188
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=91.54 E-value=9.4 Score=37.46 Aligned_cols=105 Identities=10% Similarity=0.030 Sum_probs=55.7
Q ss_pred CEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEE
Q 007468 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFW 159 (602)
Q Consensus 82 ~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~ 159 (602)
+.+++.|+. -..+.+||+.+.+-...-... ...-.+++.. ++.+++.|+.. ..+.
T Consensus 85 ~~~l~~~~~---------dg~i~v~d~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~l~s~~~d-----------g~i~ 141 (366)
T 3k26_A 85 HPLLAVAGS---------RGIIRIINPITMQCIKHYVGH---GNAINELKFHPRDPNLLLSVSKD-----------HALR 141 (366)
T ss_dssp CEEEEEEET---------TCEEEEECTTTCCEEEEEESC---CSCEEEEEECSSCTTEEEEEETT-----------SCEE
T ss_pred CCEEEEecC---------CCEEEEEEchhceEeeeecCC---CCcEEEEEECCCCCCEEEEEeCC-----------CeEE
Confidence 567777772 246888998876543321111 1111222222 45677777653 3588
Q ss_pred EEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCC
Q 007468 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (602)
Q Consensus 160 ~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~ 219 (602)
+||+.+.+-...-.. .......-.++.+ ++.+++.|+.+ ..+.+||+.+.
T Consensus 142 iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~ 193 (366)
T 3k26_A 142 LWNIQTDTLVAIFGG-VEGHRDEVLSADYDLLGEKIMSCGMD---------HSLKLWRINSK 193 (366)
T ss_dssp EEETTTTEEEEEECS-TTSCSSCEEEEEECTTSSEEEEEETT---------SCEEEEESCSH
T ss_pred EEEeecCeEEEEecc-cccccCceeEEEECCCCCEEEEecCC---------CCEEEEECCCC
Confidence 899988764433210 1111222223333 45666677653 36888888764
No 189
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=91.36 E-value=1.6 Score=43.26 Aligned_cols=113 Identities=11% Similarity=0.069 Sum_probs=56.7
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE---CCEEEEEeCccCCCCCCcceecCe
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKD 157 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~---~~~iyV~GG~~~~~~~~~~~~~~d 157 (602)
++++++.|+. -..+.+||+.+.....+..... ....-.+++.. ++.+++.|+.+ ..
T Consensus 24 ~g~~lasgs~---------D~~v~lwd~~~~~~~~~~~l~g-H~~~V~~v~~~~~~~~~~l~s~s~D-----------~~ 82 (316)
T 3bg1_A 24 YGTRLATCSS---------DRSVKIFDVRNGGQILIADLRG-HEGPVWQVAWAHPMYGNILASCSYD-----------RK 82 (316)
T ss_dssp GGCEEEEEET---------TTEEEEEEEETTEEEEEEEEEC-CSSCEEEEEECCGGGSSCEEEEETT-----------SC
T ss_pred CCCEEEEEeC---------CCeEEEEEecCCCcEEEEEEcC-CCccEEEEEeCCCCCCCEEEEEECC-----------CE
Confidence 5677777772 2367788887765432221100 01111122221 25666777653 34
Q ss_pred EEEEECCCCcEEEcccCCCCCCCcccEEEEE--C--CEEEEEcCccCCCCCeeeeceEEEEECCCC-ceEEec
Q 007468 158 FWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K--HKIIVFGGFYDTLREVRYYNDLYVFDLDQF-KWQEIK 225 (602)
Q Consensus 158 v~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~--~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~-~W~~v~ 225 (602)
+.+||+.+..|..+.. +......-.++.+ + +.+++.|+.+ ..+..||+.+. .|....
T Consensus 83 v~iWd~~~~~~~~~~~--~~~h~~~V~~v~~~p~~~g~~lasgs~D---------~~i~lwd~~~~~~~~~~~ 144 (316)
T 3bg1_A 83 VIIWREENGTWEKSHE--HAGHDSSVNSVCWAPHDYGLILACGSSD---------GAISLLTYTGEGQWEVKK 144 (316)
T ss_dssp EEEECCSSSCCCEEEE--ECCCSSCCCEEEECCTTTCSCEEEECSS---------SCEEEEEECSSSCEEECC
T ss_pred EEEEECCCCcceEEEE--ccCCCCceEEEEECCCCCCcEEEEEcCC---------CCEEEEecCCCCCcceee
Confidence 7788888876654432 1111111122333 2 5677777754 34667777654 465433
No 190
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=91.25 E-value=6.6 Score=38.16 Aligned_cols=72 Identities=10% Similarity=0.076 Sum_probs=37.9
Q ss_pred CEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCC--CeeEEeecCCCCCCCCceeEEEEE-CCeEEEecccccccccc
Q 007468 246 DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT--WEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKG 322 (602)
Q Consensus 246 ~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t--~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~GG~~~~~~~~ 322 (602)
+.+++.|+.++. +.++|+.+ ..|........ .....-.++++. ++.+++.||.++
T Consensus 219 ~~~las~s~D~~----------------v~iWd~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~las~~~D~----- 276 (297)
T 2pm7_B 219 RSYMASVSQDRT----------------CIIWTQDNEQGPWKKTLLKEE-KFPDVLWRASWSLSGNVLALSGGDN----- 276 (297)
T ss_dssp SEEEEEEETTSC----------------EEEEEESSTTSCCEEEESSSS-CCSSCEEEEEECSSSCCEEEEETTS-----
T ss_pred ceEEEEEECCCc----------------EEEEEeCCCCCccceeeeecc-cCCCcEEEEEECCCCCEEEEEcCCC-----
Confidence 477888887765 55566544 44654322100 112222333333 567777777543
Q ss_pred ccccccccCeeEEEECC-CCceEEeEe
Q 007468 323 DVIMSLFLNELYGFQLD-NHRWYPLEL 348 (602)
Q Consensus 323 ~~~~~~~~ndv~~yd~~-t~~W~~l~~ 348 (602)
.|.+|++. ...|..+..
T Consensus 277 ---------~v~lw~~~~~g~w~~~~~ 294 (297)
T 2pm7_B 277 ---------KVTLWKENLEGKWEPAGE 294 (297)
T ss_dssp ---------CEEEEEECTTSCEEEC--
T ss_pred ---------cEEEEEECCCCcEEeccc
Confidence 36667665 457887654
No 191
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=91.20 E-value=1.7 Score=45.26 Aligned_cols=101 Identities=11% Similarity=0.060 Sum_probs=52.3
Q ss_pred CCEEEEEcCccCCCCCeeeeceEEEEECCCCc----eEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCccCCCCCcc
Q 007468 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK----WQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDK 262 (602)
Q Consensus 189 ~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~----W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~ 262 (602)
++.+++.|+.+ ..|.+||+.+.. -..+... ...-.+++.. +..+++.|+.++.
T Consensus 243 ~~~~l~s~~~d---------g~i~i~d~~~~~~~~~~~~~~~~-------~~~v~~i~~~p~~~~~l~tg~~dg~----- 301 (430)
T 2xyi_A 243 HESLFGSVADD---------QKLMIWDTRNNNTSKPSHTVDAH-------TAEVNCLSFNPYSEFILATGSADKT----- 301 (430)
T ss_dssp CTTEEEEEETT---------SEEEEEETTCSCSSSCSEEEECC-------SSCEEEEEECSSCTTEEEEEETTSE-----
T ss_pred CCCEEEEEeCC---------CeEEEEECCCCCCCcceeEeecC-------CCCeEEEEeCCCCCCEEEEEeCCCe-----
Confidence 45677777643 468899988652 1111111 1111122222 4458888887765
Q ss_pred CCCCCCceeeeEEEEeCCCCe--eEEeecCCCCCCCCceeEEEEE--CCeEEEeccccccccccccccccccCeeEEEEC
Q 007468 263 NQSEKGIIHSDLWSLDPRTWE--WSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQL 338 (602)
Q Consensus 263 ~~~~~~~~~~dv~~yd~~t~~--W~~l~~~g~~P~~R~~~s~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~ 338 (602)
|.+||+.+.. -..+.. ....-.++++. +..+++.||.. +.|.+||+
T Consensus 302 -----------v~vwd~~~~~~~~~~~~~-----h~~~v~~i~~sp~~~~~l~s~~~d--------------~~i~iwd~ 351 (430)
T 2xyi_A 302 -----------VALWDLRNLKLKLHSFES-----HKDEIFQVQWSPHNETILASSGTD--------------RRLHVWDL 351 (430)
T ss_dssp -----------EEEEETTCTTSCSEEEEC-----CSSCEEEEEECSSCTTEEEEEETT--------------SCCEEEEG
T ss_pred -----------EEEEeCCCCCCCeEEeec-----CCCCEEEEEECCCCCCEEEEEeCC--------------CcEEEEeC
Confidence 7788876521 111211 11122233333 34577777754 34888887
Q ss_pred CC
Q 007468 339 DN 340 (602)
Q Consensus 339 ~t 340 (602)
..
T Consensus 352 ~~ 353 (430)
T 2xyi_A 352 SK 353 (430)
T ss_dssp GG
T ss_pred CC
Confidence 55
No 192
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=91.19 E-value=5.1 Score=39.85 Aligned_cols=104 Identities=4% Similarity=-0.113 Sum_probs=58.1
Q ss_pred CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCC
Q 007468 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEK 267 (602)
Q Consensus 189 ~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~ 267 (602)
++.+++.|+.+ ..+..||+.+..-..+... .....-.+++.. ++.+++.|+.++.
T Consensus 138 ~~~~l~s~s~d---------g~i~~wd~~~~~~~~~~~~-----~~~~~i~~~~~~pdg~~lasg~~dg~---------- 193 (343)
T 3lrv_A 138 NTEYFIWADNR---------GTIGFQSYEDDSQYIVHSA-----KSDVEYSSGVLHKDSLLLALYSPDGI---------- 193 (343)
T ss_dssp -CCEEEEEETT---------CCEEEEESSSSCEEEEECC-----CSSCCCCEEEECTTSCEEEEECTTSC----------
T ss_pred CCCEEEEEeCC---------CcEEEEECCCCcEEEEEec-----CCCCceEEEEECCCCCEEEEEcCCCE----------
Confidence 45667777753 3688899988766444322 111112233333 7788888888766
Q ss_pred CceeeeEEEEeCCCCeeE--EeecCCCCCCCCceeEEEEE-CCeEEEeccccccccccccccccccCeeEEEECCCC
Q 007468 268 GIIHSDLWSLDPRTWEWS--KVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (602)
Q Consensus 268 ~~~~~dv~~yd~~t~~W~--~l~~~g~~P~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~ 341 (602)
+.+||+.+..-. .+.. .....-.++++. ++.+++.|+ . +.|.+||+.+.
T Consensus 194 ------i~iwd~~~~~~~~~~~~~----~h~~~v~~l~fs~~g~~l~s~~-~--------------~~v~iwd~~~~ 245 (343)
T 3lrv_A 194 ------LDVYNLSSPDQASSRFPV----DEEAKIKEVKFADNGYWMVVEC-D--------------QTVVCFDLRKD 245 (343)
T ss_dssp ------EEEEESSCTTSCCEECCC----CTTSCEEEEEECTTSSEEEEEE-S--------------SBEEEEETTSS
T ss_pred ------EEEEECCCCCCCccEEec----cCCCCEEEEEEeCCCCEEEEEe-C--------------CeEEEEEcCCC
Confidence 888998776532 2211 011122233333 556666666 2 24888998764
No 193
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=91.19 E-value=15 Score=37.91 Aligned_cols=208 Identities=9% Similarity=0.017 Sum_probs=110.0
Q ss_pred eEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCC
Q 007468 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (602)
Q Consensus 72 ~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~ 149 (602)
+.+++.+ +++||+.... .+.|++||+.++.-..+.... ...+ .++. ++.||+.....
T Consensus 134 ~~la~d~--~g~lyv~d~~---------~~~I~~id~~~g~~~~~~~~~----~~~~-ia~~~~g~~l~~~d~~~----- 192 (409)
T 3hrp_A 134 WGIAAVG--NNTVLAYQRD---------DPRVRLISVDDNKVTTVHPGF----KGGK-PAVTKDKQRVYSIGWEG----- 192 (409)
T ss_dssp EEEEECS--TTEEEEEETT---------TTEEEEEETTTTEEEEEEETC----CBCB-CEECTTSSEEEEEBSST-----
T ss_pred eEEEEeC--CCCEEEEecC---------CCcEEEEECCCCEEEEeeccC----CCCc-eeEecCCCcEEEEecCC-----
Confidence 3445544 6788888651 247899999988776654321 1223 2222 45677665321
Q ss_pred CcceecCeEEEEECCCCc-EEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEecc
Q 007468 150 ERFHHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (602)
Q Consensus 150 ~~~~~~~dv~~yd~~t~~-W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~ 226 (602)
...+++|++.+.. ...+.....+....-+++++. ++.||+... ...+++||+.+.....+..
T Consensus 193 -----~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~----------~~~I~~~d~~~~~~~~~~~ 257 (409)
T 3hrp_A 193 -----THTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS----------NKNFGRFNVKTQEVTLIKQ 257 (409)
T ss_dssp -----TCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT----------TCEEEEEETTTCCEEEEEE
T ss_pred -----CceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC----------CCcEEEEECCCCCEEEEec
Confidence 1268899987553 233311101112222344444 578998322 2479999998877655522
Q ss_pred CCCCCCCCCccc--eeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCC-------
Q 007468 227 RFGSMWPSPRSG--FQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG------- 295 (602)
Q Consensus 227 ~~~~~~P~~R~~--~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~------- 295 (602)
... ....... +.+++. ++.||+...... .|++|++.... ..+...+..+.
T Consensus 258 ~~~--~g~~~~~P~~~ia~~p~~g~lyv~d~~~~----------------~I~~~~~~g~~-~~~~g~~~~~g~~dg~~~ 318 (409)
T 3hrp_A 258 LEL--SGSLGTNPGPYLIYYFVDSNFYMSDQNLS----------------SVYKITPDGEC-EWFCGSATQKTVQDGLRE 318 (409)
T ss_dssp CCC--CSCCCCSSCCEEEEETTTTEEEEEETTTT----------------EEEEECTTCCE-EEEEECTTCCSCBCEEGG
T ss_pred ccc--cCCCCCCccccEEEeCCCCEEEEEeCCCC----------------EEEEEecCCCE-EEEEeCCCCCCcCCCccc
Confidence 210 0111111 144444 689999754432 48889876552 22322110000
Q ss_pred -C--CceeEEEEE-CCeEEEecc-ccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 296 -P--RAGFSMCVH-KKRALLFGG-VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 296 -~--R~~~s~~~~-~~~lyv~GG-~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
. ..-.++++. ++.||+.-. . .+.|.+|++.+.....+..
T Consensus 319 ~~~~~~P~gia~d~dG~lyvad~~~--------------~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 319 EALFAQPNGMTVDEDGNFYIVDGFK--------------GYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp GCBCSSEEEEEECTTCCEEEEETTT--------------TCEEEEEETTTTEEEEEEE
T ss_pred ccEeCCCeEEEEeCCCCEEEEeCCC--------------CCEEEEEECCCCEEEEEeC
Confidence 0 112344444 567888743 2 2469999977776665554
No 194
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=91.17 E-value=6.2 Score=41.01 Aligned_cols=17 Identities=12% Similarity=0.337 Sum_probs=13.0
Q ss_pred ceeEEEEE-CCeEEEecc
Q 007468 298 AGFSMCVH-KKRALLFGG 314 (602)
Q Consensus 298 ~~~s~~~~-~~~lyv~GG 314 (602)
..|++++. ++.+|.+|-
T Consensus 338 ~~hs~alt~~G~v~~wG~ 355 (406)
T 4d9s_A 338 WRHTLAVTERNNVFAWGR 355 (406)
T ss_dssp SSEEEEEETTSCEEEEEC
T ss_pred CCeEEEEeCCCCEEEecC
Confidence 45777776 688999984
No 195
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=91.09 E-value=10 Score=37.03 Aligned_cols=168 Identities=8% Similarity=-0.080 Sum_probs=82.2
Q ss_pred cceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCC
Q 007468 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPN 148 (602)
Q Consensus 70 ~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~ 148 (602)
...+.+..+. ++.||+.+-. .+.+++|++ +.....+.. +.. ..++.+.- ++.||+....
T Consensus 46 ~~egp~~~~~-g~~l~~~d~~---------~~~i~~~~~-~g~~~~~~~---~~~-~~~gl~~d~dG~l~v~~~~----- 105 (305)
T 3dr2_A 46 WSEGPAWWEA-QRTLVWSDLV---------GRRVLGWRE-DGTVDVLLD---ATA-FTNGNAVDAQQRLVHCEHG----- 105 (305)
T ss_dssp SEEEEEEEGG-GTEEEEEETT---------TTEEEEEET-TSCEEEEEE---SCS-CEEEEEECTTSCEEEEETT-----
T ss_pred CccCCeEeCC-CCEEEEEECC---------CCEEEEEeC-CCCEEEEeC---CCC-ccceeeECCCCCEEEEECC-----
Confidence 3344555552 3457776541 246889998 455554432 111 12223332 5678776421
Q ss_pred CCcceecCeEEEEECCCCcEEEcccCC--CCCCCcccEEEEECCEEEEE----cCccC---C-CCCeeeeceEEEEECCC
Q 007468 149 QERFHHYKDFWMLDLKTNQWEQLNLKG--CPSPRSGHRMVLYKHKIIVF----GGFYD---T-LREVRYYNDLYVFDLDQ 218 (602)
Q Consensus 149 ~~~~~~~~dv~~yd~~t~~W~~~~~~~--~p~~R~~h~~~~~~~~Lyv~----GG~~~---~-~~~~~~~~~v~~yd~~t 218 (602)
...+++|++. .+.+.+.... .+..+-...++.-++.||+. |-... . .........|++||+.+
T Consensus 106 ------~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~ 178 (305)
T 3dr2_A 106 ------RRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG 178 (305)
T ss_dssp ------TTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred ------CCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence 2458888886 6666553211 01111122222236788884 33210 0 00000135799999988
Q ss_pred CceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCe
Q 007468 219 FKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (602)
Q Consensus 219 ~~W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (602)
.+++.+. .. ..| .+++.. +..||+....... .....+++|++....
T Consensus 179 g~~~~~~-~~----~~p---~gl~~spdg~~lyv~~~~~~~-----------~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 179 SPLQRMA-DL----DHP---NGLAFSPDEQTLYVSQTPEQG-----------HGSVEITAFAWRDGA 226 (305)
T ss_dssp CCCEEEE-EE----SSE---EEEEECTTSSEEEEEECCC--------------CCCEEEEEEEETTE
T ss_pred CcEEEEe-cC----CCC---cceEEcCCCCEEEEEecCCcC-----------CCCCEEEEEEecCCC
Confidence 8887765 20 111 223333 4468876443210 112458888876544
No 196
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=91.08 E-value=4.8 Score=39.66 Aligned_cols=155 Identities=6% Similarity=0.006 Sum_probs=83.5
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEE
Q 007468 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLY 212 (602)
Q Consensus 134 ~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~ 212 (602)
++.||+.+.. ...+++||+.+.++..+.. .+ ...-++++.. +++||+....... ....|+
T Consensus 55 ~g~l~~~~~~-----------~~~i~~~d~~~~~~~~~~~--~~-~~~~~~i~~~~dg~l~v~~~~~~~-----~~~~i~ 115 (333)
T 2dg1_A 55 QGQLFLLDVF-----------EGNIFKINPETKEIKRPFV--SH-KANPAAIKIHKDGRLFVCYLGDFK-----STGGIF 115 (333)
T ss_dssp TSCEEEEETT-----------TCEEEEECTTTCCEEEEEE--CS-SSSEEEEEECTTSCEEEEECTTSS-----SCCEEE
T ss_pred CCCEEEEECC-----------CCEEEEEeCCCCcEEEEee--CC-CCCcceEEECCCCcEEEEeCCCCC-----CCceEE
Confidence 5678887653 2468999999988876542 11 1222333332 5678876532211 125799
Q ss_pred EEECCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCC
Q 007468 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG 291 (602)
Q Consensus 213 ~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g 291 (602)
+||+.+.....+.... .....-..+++. ++.||+....... ......+|+|++.+.+...+...
T Consensus 116 ~~d~~~~~~~~~~~~~----~~~~~~~~i~~d~~g~l~v~~~~~~~----------~~~~~~l~~~~~~~~~~~~~~~~- 180 (333)
T 2dg1_A 116 AATENGDNLQDIIEDL----STAYCIDDMVFDSKGGFYFTDFRGYS----------TNPLGGVYYVSPDFRTVTPIIQN- 180 (333)
T ss_dssp EECTTSCSCEEEECSS----SSCCCEEEEEECTTSCEEEEECCCBT----------TBCCEEEEEECTTSCCEEEEEEE-
T ss_pred EEeCCCCEEEEEEccC----ccCCcccceEECCCCCEEEEeccccc----------cCCCceEEEEeCCCCEEEEeecC-
Confidence 9999887765332210 111122223333 6788875432111 12235699999887666655321
Q ss_pred CCCCCCceeEEEEE-CC-eEEEeccccccccccccccccccCeeEEEECCC
Q 007468 292 MPPGPRAGFSMCVH-KK-RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (602)
Q Consensus 292 ~~P~~R~~~s~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t 340 (602)
.....++++. ++ .||+.... .+.|++|++.+
T Consensus 181 ----~~~~~~i~~~~dg~~l~v~~~~--------------~~~i~~~d~~~ 213 (333)
T 2dg1_A 181 ----ISVANGIALSTDEKVLWVTETT--------------ANRLHRIALED 213 (333)
T ss_dssp ----ESSEEEEEECTTSSEEEEEEGG--------------GTEEEEEEECT
T ss_pred ----CCcccceEECCCCCEEEEEeCC--------------CCeEEEEEecC
Confidence 0112334443 33 46665322 24689999854
No 197
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=91.00 E-value=17 Score=40.69 Aligned_cols=122 Identities=15% Similarity=0.092 Sum_probs=70.2
Q ss_pred EEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCC--cEEEcccCCC---CCC---CcccEEEEECCEEEEEcCccCC
Q 007468 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKGC---PSP---RSGHRMVLYKHKIIVFGGFYDT 201 (602)
Q Consensus 130 ~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~~~~~~~~---p~~---R~~h~~~~~~~~Lyv~GG~~~~ 201 (602)
-++.++.||+.... ..++.||..+. .|+.-..... +.. ....+.++.+++||+...
T Consensus 66 P~v~~g~vyv~~~~------------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~---- 129 (689)
T 1yiq_A 66 PIVVDGVMYTTGPF------------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL---- 129 (689)
T ss_dssp CEEETTEEEEECGG------------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT----
T ss_pred CEEECCEEEEEcCC------------CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc----
Confidence 34679999997642 45889998877 4876433110 000 111234567888887542
Q ss_pred CCCeeeeceEEEEECCCCc--eEEecc-CCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEe
Q 007468 202 LREVRYYNDLYVFDLDQFK--WQEIKP-RFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD 278 (602)
Q Consensus 202 ~~~~~~~~~v~~yd~~t~~--W~~v~~-~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd 278 (602)
-..|+.||..|.+ |+.-.. .+. .......+.++.++.||+-.+.... .....++.||
T Consensus 130 ------dg~l~AlDa~TG~~~W~~~~~~~~~---~~~~~~~sP~v~~g~v~vg~~~~~~-----------~~~g~v~a~D 189 (689)
T 1yiq_A 130 ------DGRLEAIDAKTGQRAWSVDTRADHK---RSYTITGAPRVVNGKVVIGNGGAEF-----------GVRGYVTAYD 189 (689)
T ss_dssp ------TSEEEEEETTTCCEEEEEECCSCTT---SCCBCCSCCEEETTEEEECCBCTTT-----------CCBCEEEEEE
T ss_pred ------CCEEEEEECCCCCEeeeecCcCCCC---CCccccCCcEEECCEEEEEeCCCcc-----------CCCCEEEEEE
Confidence 2468999998865 887543 100 1111222335568888774322111 1234699999
Q ss_pred CCCC--eeEEe
Q 007468 279 PRTW--EWSKV 287 (602)
Q Consensus 279 ~~t~--~W~~l 287 (602)
+.+. .|+.-
T Consensus 190 ~~tG~~~W~~~ 200 (689)
T 1yiq_A 190 AETGKEAWRFY 200 (689)
T ss_dssp TTTCCEEEEEE
T ss_pred CCCCcEEEEec
Confidence 8765 48865
No 198
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=90.94 E-value=5.4 Score=40.33 Aligned_cols=150 Identities=13% Similarity=0.063 Sum_probs=76.2
Q ss_pred CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCC----CcccEEEEE--C-CEEEEEcCccCCCCCeee
Q 007468 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP----RSGHRMVLY--K-HKIIVFGGFYDTLREVRY 207 (602)
Q Consensus 135 ~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~----R~~h~~~~~--~-~~Lyv~GG~~~~~~~~~~ 207 (602)
+.+++.|+.. ..+.+||+.+.+....-. .+.. .....++.+ + ..+++.|+.+..
T Consensus 178 ~~~l~~~~~d-----------g~v~iwd~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~------ 238 (416)
T 2pm9_A 178 AHVFASAGSS-----------NFASIWDLKAKKEVIHLS--YTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN------ 238 (416)
T ss_dssp TTEEEEESSS-----------SCEEEEETTTTEEEEEEC--CCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS------
T ss_pred CcEEEEEcCC-----------CCEEEEECCCCCcceEEe--ccccccccCCceEEEEECCCCCCEEEEEECCCC------
Confidence 5677777753 358899998876543322 1211 222223333 2 357777765421
Q ss_pred eceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeE
Q 007468 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (602)
Q Consensus 208 ~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (602)
...+.+||+.+..- .+..... .....-.+++.. ++.+++.|+.++. +.+||+.+.+-.
T Consensus 239 ~~~i~~~d~~~~~~-~~~~~~~---~~~~~v~~~~~s~~~~~~l~s~~~dg~----------------v~~wd~~~~~~~ 298 (416)
T 2pm9_A 239 DPSILIWDLRNANT-PLQTLNQ---GHQKGILSLDWCHQDEHLLLSSGRDNT----------------VLLWNPESAEQL 298 (416)
T ss_dssp SCCCCEEETTSTTS-CSBCCCS---CCSSCEEEEEECSSCSSCEEEEESSSE----------------EEEECSSSCCEE
T ss_pred CceEEEEeCCCCCC-CcEEeec---CccCceeEEEeCCCCCCeEEEEeCCCC----------------EEEeeCCCCccc
Confidence 12678888876421 1111100 011111222222 5677788877654 788888765433
Q ss_pred EeecCCCCCCCCceeEEEEE-CC-eEEEeccccccccccccccccccCeeEEEECCCC
Q 007468 286 KVKKIGMPPGPRAGFSMCVH-KK-RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (602)
Q Consensus 286 ~l~~~g~~P~~R~~~s~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~ 341 (602)
..-.. ....-.++++. ++ .+++.|+.+ +.|.+|++.+.
T Consensus 299 ~~~~~----~~~~v~~~~~s~~~~~~l~s~~~d--------------~~i~iw~~~~~ 338 (416)
T 2pm9_A 299 SQFPA----RGNWCFKTKFAPEAPDLFACASFD--------------NKIEVQTLQNL 338 (416)
T ss_dssp EEEEC----SSSCCCCEEECTTCTTEEEECCSS--------------SEEEEEESCCC
T ss_pred eeecC----CCCceEEEEECCCCCCEEEEEecC--------------CcEEEEEccCC
Confidence 22111 11112233443 34 688888764 34888887664
No 199
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=90.85 E-value=16 Score=40.72 Aligned_cols=124 Identities=13% Similarity=0.061 Sum_probs=70.9
Q ss_pred EEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCC--cEEEcccCCCC---C---CCcccEEEEECCEEEEEcCccC
Q 007468 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKGCP---S---PRSGHRMVLYKHKIIVFGGFYD 200 (602)
Q Consensus 129 s~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~~~~~~~~p---~---~R~~h~~~~~~~~Lyv~GG~~~ 200 (602)
+-++.++.||+.... ..++.||..+. .|+.-...... . .....+.++.+++||+...
T Consensus 61 ~P~v~~g~vyv~~~~------------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--- 125 (668)
T 1kv9_A 61 TPLFHDGVIYTSMSW------------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL--- 125 (668)
T ss_dssp CCEEETTEEEEEEGG------------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT---
T ss_pred CCEEECCEEEEECCC------------CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC---
Confidence 335679999998642 45888998776 48764331100 0 0011234567888887542
Q ss_pred CCCCeeeeceEEEEECCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEe
Q 007468 201 TLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD 278 (602)
Q Consensus 201 ~~~~~~~~~~v~~yd~~t~~--W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd 278 (602)
-..|++||..|.+ |+.-...+. .......+.++.++.|||..+.... .....++.||
T Consensus 126 -------dg~l~alD~~tG~~~W~~~~~~~~---~~~~~~~~P~v~~~~v~vg~~~~~~-----------~~~g~v~a~D 184 (668)
T 1kv9_A 126 -------DGRLIALDAKTGKAIWSQQTTDPA---KPYSITGAPRVVKGKVIIGNGGAEY-----------GVRGFVSAYD 184 (668)
T ss_dssp -------TSEEEEEETTTCCEEEEEECSCTT---SSCBCCSCCEEETTEEEECCBCTTT-----------CCBCEEEEEE
T ss_pred -------CCEEEEEECCCCCEeeeeccCCCC---CcceecCCCEEECCEEEEeCCCCCc-----------CCCCEEEEEE
Confidence 2469999998865 887543210 1111222335568888874332111 1234699999
Q ss_pred CCCC--eeEEee
Q 007468 279 PRTW--EWSKVK 288 (602)
Q Consensus 279 ~~t~--~W~~l~ 288 (602)
+.+. .|+.-.
T Consensus 185 ~~tG~~~W~~~~ 196 (668)
T 1kv9_A 185 ADTGKLAWRFYT 196 (668)
T ss_dssp TTTCCEEEEEES
T ss_pred CCCCcEEEEecc
Confidence 8765 588753
No 200
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=90.83 E-value=10 Score=38.86 Aligned_cols=194 Identities=8% Similarity=0.080 Sum_probs=102.0
Q ss_pred cEEEEEcCC--CcEEEecCCCCCCCceeeEEEEE---CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCC-
Q 007468 102 DLYRYDVEK--QEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG- 175 (602)
Q Consensus 102 dv~~yd~~~--~~W~~l~~~~~P~~R~~hs~~~~---~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~- 175 (602)
-+++|+... .+|..+... +....-+++++. .+.||+.+.... .-.-|++.+-...+|+.+....
T Consensus 32 Gl~~~~~~~~g~~W~~~~~~--~~~~~v~~i~~dp~~~~~l~~g~~~g~--------~g~gl~~s~D~G~tW~~~~~~~~ 101 (394)
T 3b7f_A 32 GAWFLASDPARRTWELRGPV--FLGHTIHHIVQDPREPERMLMAARTGH--------LGPTVFRSDDGGGNWTEATRPPA 101 (394)
T ss_dssp EEEEEEECTTSCSEEEEEEE--STTSEEEEEEECSSSTTCEEEEEEC----------CCEEEEEESSTTSCCEECSBCCC
T ss_pred ceEEEECCCCCCCceECCcc--CCCCceEEEEECCCCCCeEEEEecCCC--------CCccEEEeCCCCCCceECCcccc
Confidence 467787755 689976421 122334444444 467887653210 0124777777778999986421
Q ss_pred CCCC--C-----ccc--EEEEE----CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCC-----------
Q 007468 176 CPSP--R-----SGH--RMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM----------- 231 (602)
Q Consensus 176 ~p~~--R-----~~h--~~~~~----~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~----------- 231 (602)
.+.. + ..+ ++++. .+.||+.+- ...|++.+-...+|+.+.......
T Consensus 102 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~----------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~ 171 (394)
T 3b7f_A 102 FNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS----------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQD 171 (394)
T ss_dssp CCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE----------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC--
T ss_pred CCCcccccccccccceeEEEeCCCCCCCEEEEEec----------CCcEEEEcCCCCCeEECcCccCCcccccccccccc
Confidence 1211 1 111 22232 467776532 235777777778899986421000
Q ss_pred -CCCCccceeEEEe---CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecC---CCCCCC-----Cce
Q 007468 232 -WPSPRSGFQFFVY---QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI---GMPPGP-----RAG 299 (602)
Q Consensus 232 -~P~~R~~~~~~~~---~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~---g~~P~~-----R~~ 299 (602)
.+....-+++++. .+.|||.... . .+++.+-...+|+.+... ...|.+ ...
T Consensus 172 g~~~~~~i~~i~~d~~~~~~l~vg~~~-g----------------gl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~ 234 (394)
T 3b7f_A 172 GTPDGPKMHSILVDPRDPKHLYIGMSS-G----------------GVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDP 234 (394)
T ss_dssp --CCCCEEEEEEECTTCTTCEEEEEET-B----------------EEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCE
T ss_pred CCCCCCceeEEEECCCCCCEEEEEECC-C----------------CEEEECCCCCCceECCCCccccccCCCccccCcce
Confidence 0111122344433 3567765322 1 277777778899988531 011211 223
Q ss_pred eEEEEEC---CeEEEeccccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 300 FSMCVHK---KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 300 ~s~~~~~---~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
+++++.. +.||+. .. .-|++++-...+|..+..
T Consensus 235 ~~i~~~~~~~~~l~vg-~~---------------~gl~~s~D~G~tW~~~~~ 270 (394)
T 3b7f_A 235 HCVVQHPAAPDILYQQ-NH---------------CGIYRMDRREGVWKRIGD 270 (394)
T ss_dssp EEEEECSSSTTEEEEE-ET---------------TEEEEEETTTTEEECGGG
T ss_pred eEEEECCCCCCEEEEE-cC---------------CeEEEeCCCCCcceECCC
Confidence 4555542 556663 21 237888878889988753
No 201
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=90.82 E-value=3.5 Score=40.69 Aligned_cols=139 Identities=9% Similarity=-0.020 Sum_probs=69.7
Q ss_pred CcEEEEEcCCCcE-EEecCCCCCCC-ceeeEEEEE-C----CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEccc
Q 007468 101 GDLYRYDVEKQEW-KVISSPNSPPP-RSAHQAVSW-K----NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (602)
Q Consensus 101 ~dv~~yd~~~~~W-~~l~~~~~P~~-R~~hs~~~~-~----~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~ 173 (602)
+.|.+||..+... ..+.....+.. ..-.+++.. + +.+++.|+.+ ..+.+||+.+.+-...-.
T Consensus 44 ~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-----------g~i~v~d~~~~~~~~~~~ 112 (366)
T 3k26_A 44 NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR-----------GIIRIINPITMQCIKHYV 112 (366)
T ss_dssp TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT-----------CEEEEECTTTCCEEEEEE
T ss_pred CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC-----------CEEEEEEchhceEeeeec
Confidence 3578888886543 23321111111 112222222 3 4677777753 357888888765332211
Q ss_pred CCCCCCCcccEEEEE---CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe-CCEEE
Q 007468 174 KGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVF 249 (602)
Q Consensus 174 ~~~p~~R~~h~~~~~---~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iy 249 (602)
.. ...-.++.+ ++.+++.|+.+ ..|.+||+.+..-...-.... .....-.+++.. ++..+
T Consensus 113 --~~--~~~i~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l 176 (366)
T 3k26_A 113 --GH--GNAINELKFHPRDPNLLLSVSKD---------HALRLWNIQTDTLVAIFGGVE---GHRDEVLSADYDLLGEKI 176 (366)
T ss_dssp --SC--CSCEEEEEECSSCTTEEEEEETT---------SCEEEEETTTTEEEEEECSTT---SCSSCEEEEEECTTSSEE
T ss_pred --CC--CCcEEEEEECCCCCCEEEEEeCC---------CeEEEEEeecCeEEEEecccc---cccCceeEEEECCCCCEE
Confidence 01 111222333 55777777753 468889998775443321100 111122223332 56677
Q ss_pred EEcCccCCCCCccCCCCCCceeeeEEEEeCCCC
Q 007468 250 LYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (602)
Q Consensus 250 v~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (602)
+.|+.++. +.+||+.+.
T Consensus 177 ~~~~~dg~----------------i~i~d~~~~ 193 (366)
T 3k26_A 177 MSCGMDHS----------------LKLWRINSK 193 (366)
T ss_dssp EEEETTSC----------------EEEEESCSH
T ss_pred EEecCCCC----------------EEEEECCCC
Confidence 77777665 778887654
No 202
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=90.79 E-value=0.32 Score=49.24 Aligned_cols=151 Identities=13% Similarity=0.105 Sum_probs=73.8
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceE
Q 007468 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (602)
Q Consensus 134 ~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v 211 (602)
++.+++.|+.. ..+.+||+.+..|..+.. +......-.++.+ ++.+++.|+.+ ..+
T Consensus 22 ~g~~l~~~~~d-----------~~i~iw~~~~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~s~d---------~~v 79 (377)
T 3dwl_C 22 QRTEFVTTTAT-----------NQVELYEQDGNGWKHART--FSDHDKIVTCVDWAPKSNRIVTCSQD---------RNA 79 (377)
T ss_dssp SSSEEECCCSS-----------SCBCEEEEETTEEEECCC--BCCCSSCEEEEEECTTTCCEEEEETT---------SSE
T ss_pred CCCEEEEecCC-----------CEEEEEEccCCceEEEEE--EecCCceEEEEEEeCCCCEEEEEeCC---------CeE
Confidence 45566666643 346678888888877655 2222222223333 45677777753 357
Q ss_pred EEEECCCCc-eEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCe-eEEee
Q 007468 212 YVFDLDQFK-WQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE-WSKVK 288 (602)
Q Consensus 212 ~~yd~~t~~-W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~-W~~l~ 288 (602)
.+||+.+.. |..+.... .....-.+++.. ++.+++.|+.++. +.+||+.+.. |..+.
T Consensus 80 ~vwd~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~----------------i~iwd~~~~~~~~~~~ 139 (377)
T 3dwl_C 80 YVYEKRPDGTWKQTLVLL----RLNRAATFVRWSPNEDKFAVGSGARV----------------ISVCYFEQENDWWVSK 139 (377)
T ss_dssp EEC------CCCCEEECC----CCSSCEEEEECCTTSSCCEEEESSSC----------------EEECCC-----CCCCE
T ss_pred EEEEcCCCCceeeeeEec----ccCCceEEEEECCCCCEEEEEecCCe----------------EEEEEECCcccceeee
Confidence 888888766 54443331 111112222222 5667777777655 6677776553 33222
Q ss_pred cCCCCCCCCceeEEEEE-CCeEEEeccccccccccccccccccCeeEEEECCCC
Q 007468 289 KIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (602)
Q Consensus 289 ~~g~~P~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~ 341 (602)
.... +....-.++++. ++++++.|+.+ ..|.+||+.+.
T Consensus 140 ~~~~-~h~~~v~~~~~~~~~~~l~~~~~d--------------~~i~iwd~~~~ 178 (377)
T 3dwl_C 140 HLKR-PLRSTILSLDWHPNNVLLAAGCAD--------------RKAYVLSAYVR 178 (377)
T ss_dssp EECS-SCCSCEEEEEECTTSSEEEEEESS--------------SCEEEEEECCS
T ss_pred Eeec-ccCCCeEEEEEcCCCCEEEEEeCC--------------CEEEEEEEEec
Confidence 2211 122223334443 56677777754 34788887544
No 203
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=90.78 E-value=2.9 Score=41.22 Aligned_cols=105 Identities=12% Similarity=0.119 Sum_probs=52.4
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCc--EEEecCCCCCCCceeeEEEE-----ECCEEEEEeCccCCCCCCcce
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVS-----WKNYLYIFGGEFTSPNQERFH 153 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~--W~~l~~~~~P~~R~~hs~~~-----~~~~iyV~GG~~~~~~~~~~~ 153 (602)
++.+++.|+. -..+.+||+.+.. ...+........+.-.+++. -++.+++.|+..
T Consensus 128 ~~~~l~~~~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d--------- 189 (357)
T 3i2n_A 128 GAPEIVTGSR---------DGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN--------- 189 (357)
T ss_dssp CCCEEEEEET---------TSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT---------
T ss_pred CccEEEEEeC---------CCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC---------
Confidence 3455666652 2367888888764 33333211111222222321 255666666542
Q ss_pred ecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE----CCEEEEEcCccCCCCCeeeeceEEEEECCC
Q 007468 154 HYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (602)
Q Consensus 154 ~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~----~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t 218 (602)
..+.+||+.+..-..... . ...-.+++.. ++.+++.|+.+ ..+.+||+.+
T Consensus 190 --~~i~i~d~~~~~~~~~~~--~--~~~v~~~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~ 243 (357)
T 3i2n_A 190 --GDIKLFDLRNMALRWETN--I--KNGVCSLEFDRKDISMNKLVATSLE---------GKFHVFDMRT 243 (357)
T ss_dssp --SEEEEEETTTTEEEEEEE--C--SSCEEEEEESCSSSSCCEEEEEEST---------TEEEEEEEEE
T ss_pred --CeEEEEECccCceeeecC--C--CCceEEEEcCCCCCCCCEEEEECCC---------CeEEEEeCcC
Confidence 458899998876433322 1 1112223332 45666666643 3566777654
No 204
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=90.58 E-value=6.8 Score=38.29 Aligned_cols=143 Identities=10% Similarity=0.027 Sum_probs=68.7
Q ss_pred EEEEecCCCCE-EEEEcceecCCCCceeeCcEEEEEc-CCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCC
Q 007468 73 SLNINPLKETE-LILYGGEFYNGNKTYVYGDLYRYDV-EKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQE 150 (602)
Q Consensus 73 s~~~~~~~~~~-iyv~GG~~~~g~~~~~~~dv~~yd~-~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~ 150 (602)
++++.| ++. +++.|+. -..|++||+ .+.....+.... ....-.+++...+.+++.|+..
T Consensus 61 ~~~~~~--~~~~~l~~~~~---------dg~i~~wd~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~l~s~~~d------ 121 (342)
T 1yfq_A 61 CCNFID--NTDLQIYVGTV---------QGEILKVDLIGSPSFQALTNNE--ANLGICRICKYGDDKLIAASWD------ 121 (342)
T ss_dssp EEEEEE--SSSEEEEEEET---------TSCEEEECSSSSSSEEECBSCC--CCSCEEEEEEETTTEEEEEETT------
T ss_pred EEEECC--CCCcEEEEEcC---------CCeEEEEEeccCCceEeccccC--CCCceEEEEeCCCCEEEEEcCC------
Confidence 444554 566 6777762 247899999 888776554310 1112222333335555566542
Q ss_pred cceecCeEEEEECCCCc-------EEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCC-Cc--
Q 007468 151 RFHHYKDFWMLDLKTNQ-------WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FK-- 220 (602)
Q Consensus 151 ~~~~~~dv~~yd~~t~~-------W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t-~~-- 220 (602)
..+.+||+.+.. ...+.. ......-.+++...+. ++.|+.+ ..+.+||+.+ ..
T Consensus 122 -----~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~-l~~~~~d---------~~i~i~d~~~~~~~~ 184 (342)
T 1yfq_A 122 -----GLIEVIDPRNYGDGVIAVKNLNSNN--TKVKNKIFTMDTNSSR-LIVGMNN---------SQVQWFRLPLCEDDN 184 (342)
T ss_dssp -----SEEEEECHHHHTTBCEEEEESCSSS--SSSCCCEEEEEECSSE-EEEEEST---------TEEEEEESSCCTTCC
T ss_pred -----CeEEEEcccccccccccccCCeeeE--EeeCCceEEEEecCCc-EEEEeCC---------CeEEEEECCcccccc
Confidence 346677765300 112221 1211122233333445 5555532 4688899887 33
Q ss_pred eEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCccCC
Q 007468 221 WQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKE 257 (602)
Q Consensus 221 W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~~ 257 (602)
....... ....-.+++.. ++.+++.|+.++.
T Consensus 185 ~~~~~~~------~~~~i~~i~~~~~~~~~l~~~~~dg~ 217 (342)
T 1yfq_A 185 GTIEESG------LKYQIRDVALLPKEQEGYACSSIDGR 217 (342)
T ss_dssp CEEEECS------CSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred ceeeecC------CCCceeEEEECCCCCCEEEEEecCCc
Confidence 3322222 11111223333 4667777776544
No 205
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=90.57 E-value=16 Score=36.88 Aligned_cols=184 Identities=7% Similarity=-0.091 Sum_probs=90.8
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~ 179 (602)
..|.++|+.+.+........ .. -.+++.- ++.+++.|+. +.+.+++..+..............
T Consensus 157 ~~i~iwd~~~~~~~~~~~~~--~~--V~~v~fspdg~~l~s~s~------------~~~~~~~~~~~~~~~~~~~~~~~~ 220 (365)
T 4h5i_A 157 AIMRIIDPSDLTEKFEIETR--GE--VKDLHFSTDGKVVAYITG------------SSLEVISTVTGSCIARKTDFDKNW 220 (365)
T ss_dssp CEEEEEETTTTEEEEEEECS--SC--CCEEEECTTSSEEEEECS------------SCEEEEETTTCCEEEEECCCCTTE
T ss_pred CEEEEeECCCCcEEEEeCCC--Cc--eEEEEEccCCceEEeccc------------eeEEEEEeccCcceeeeecCCCCC
Confidence 46788999888765432211 11 1122222 4556566542 346677777766543322111111
Q ss_pred CcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCccCCC
Q 007468 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEV 258 (602)
Q Consensus 180 R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~ 258 (602)
.....+..-++.+++.++..... ...++.++.....+..+...... .....-.++++. ++++++.|+.++.
T Consensus 221 ~v~~v~fspdg~~l~~~s~d~~~-----~~~i~~~~~~~~~~~~~~~~~~~--~~~~~V~~~~~Spdg~~lasgs~D~~- 292 (365)
T 4h5i_A 221 SLSKINFIADDTVLIAASLKKGK-----GIVLTKISIKSGNTSVLRSKQVT--NRFKGITSMDVDMKGELAVLASNDNS- 292 (365)
T ss_dssp EEEEEEEEETTEEEEEEEESSSC-----CEEEEEEEEETTEEEEEEEEEEE--SSCSCEEEEEECTTSCEEEEEETTSC-
T ss_pred CEEEEEEcCCCCEEEEEecCCcc-----eeEEeecccccceecceeeeeec--CCCCCeEeEEECCCCCceEEEcCCCE-
Confidence 11112222377777777765432 23466677766655443221000 001111122222 7888888888766
Q ss_pred CCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEeccccccccccccccccccCeeEEEE
Q 007468 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ 337 (602)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd 337 (602)
|.+||+.+.+-...-..+. ...-.++++. ++++++.|+.+ +.|-+|+
T Consensus 293 ---------------V~iwd~~~~~~~~~~~~gH---~~~V~~v~fSpdg~~laS~S~D--------------~tvrvw~ 340 (365)
T 4h5i_A 293 ---------------IALVKLKDLSMSKIFKQAH---SFAITEVTISPDSTYVASVSAA--------------NTIHIIK 340 (365)
T ss_dssp ---------------EEEEETTTTEEEEEETTSS---SSCEEEEEECTTSCEEEEEETT--------------SEEEEEE
T ss_pred ---------------EEEEECCCCcEEEEecCcc---cCCEEEEEECCCCCEEEEEeCC--------------CeEEEEE
Confidence 8889988765322111111 1111233333 67777777754 3577888
Q ss_pred CCC
Q 007468 338 LDN 340 (602)
Q Consensus 338 ~~t 340 (602)
+..
T Consensus 341 ip~ 343 (365)
T 4h5i_A 341 LPL 343 (365)
T ss_dssp CCT
T ss_pred cCC
Confidence 643
No 206
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=90.07 E-value=18 Score=39.39 Aligned_cols=125 Identities=12% Similarity=0.151 Sum_probs=70.6
Q ss_pred EEEEECCEEEEEeCccCCCCCCcceecCeEEEEEC-CCC--cEEEcccCCC---CCC---CcccEEEEECCEEEEEcCcc
Q 007468 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDL-KTN--QWEQLNLKGC---PSP---RSGHRMVLYKHKIIVFGGFY 199 (602)
Q Consensus 129 s~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~-~t~--~W~~~~~~~~---p~~---R~~h~~~~~~~~Lyv~GG~~ 199 (602)
+-++.++.||+.... ...++.||. .+. .|+.-..... +.. ....+.++.+++||+...
T Consensus 57 ~P~v~~g~vyv~~~~-----------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-- 123 (571)
T 2ad6_A 57 APLVIGDMMYVHSAF-----------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-- 123 (571)
T ss_dssp CCEEETTEEEEECST-----------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT--
T ss_pred ccEEECCEEEEEeCC-----------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC--
Confidence 345669999998652 145889998 776 5886433110 000 112234667889988643
Q ss_pred CCCCCeeeeceEEEEECCCC--ceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEE
Q 007468 200 DTLREVRYYNDLYVFDLDQF--KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSL 277 (602)
Q Consensus 200 ~~~~~~~~~~~v~~yd~~t~--~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~y 277 (602)
-..|+++|..+. .|+.-..... .......+-++.++.||+..+.... .....++.|
T Consensus 124 --------dg~l~alD~~tG~~~W~~~~~~~~---~~~~~~~~P~v~~g~v~vg~~~~~~-----------~~~g~v~a~ 181 (571)
T 2ad6_A 124 --------NGHLLALDAKTGKINWEVEVCDPK---VGSTLTQAPFVAKDTVLMGCSGAEL-----------GVRGAVNAF 181 (571)
T ss_dssp --------TSEEEEEETTTCCEEEEEECCCGG---GTCBCCSCCEEETTEEEEECBCGGG-----------TCCCEEEEE
T ss_pred --------CCEEEEEECCCCCEEEEecCCCCC---ccceeccCCEEECCEEEEEecCCcc-----------CCCCEEEEE
Confidence 246999999886 4876432200 0001112234568888875442110 123458999
Q ss_pred eCCCC--eeEEee
Q 007468 278 DPRTW--EWSKVK 288 (602)
Q Consensus 278 d~~t~--~W~~l~ 288 (602)
|+.+. .|+.-.
T Consensus 182 D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 182 DLKTGELKWRAFA 194 (571)
T ss_dssp ETTTCCEEEEEES
T ss_pred ECCCCcEEEEEcc
Confidence 98754 587653
No 207
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=89.98 E-value=18 Score=36.81 Aligned_cols=195 Identities=12% Similarity=0.235 Sum_probs=101.4
Q ss_pred cceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCC-CCCC--c-------eeeEEEEE----CC
Q 007468 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN-SPPP--R-------SAHQAVSW----KN 135 (602)
Q Consensus 70 ~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~-~P~~--R-------~~hs~~~~----~~ 135 (602)
.-+++++.|...+.||+.+.. +. .-.-|++++-...+|+.+.... .|.. + .-+++++. .+
T Consensus 56 ~v~~i~~dp~~~~~l~~g~~~---g~---~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 129 (394)
T 3b7f_A 56 TIHHIVQDPREPERMLMAART---GH---LGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG 129 (394)
T ss_dssp EEEEEEECSSSTTCEEEEEEC--------CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT
T ss_pred ceEEEEECCCCCCeEEEEecC---CC---CCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCC
Confidence 345566655334677776532 10 1125777777778999886421 1111 1 11123332 46
Q ss_pred EEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCC-CCC--------------CCcccEEEEE---CCEEEEEcC
Q 007468 136 YLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPS--------------PRSGHRMVLY---KHKIIVFGG 197 (602)
Q Consensus 136 ~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~-~p~--------------~R~~h~~~~~---~~~Lyv~GG 197 (602)
.||+.+- ...+++.+-...+|+.+.... .|. ...-+++++. .+.||+..+
T Consensus 130 ~l~~g~~------------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~ 197 (394)
T 3b7f_A 130 TWYAGTS------------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS 197 (394)
T ss_dssp CEEEEEE------------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE
T ss_pred EEEEEec------------CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC
Confidence 6776542 135778877788999875310 121 1122333332 256776532
Q ss_pred ccCCCCCeeeeceEEEEECCCCceEEeccCC-CCCCCCC-----ccceeEEEe-C--CEEEEEcCccCCCCCccCCCCCC
Q 007468 198 FYDTLREVRYYNDLYVFDLDQFKWQEIKPRF-GSMWPSP-----RSGFQFFVY-Q--DEVFLYGGYSKEVSTDKNQSEKG 268 (602)
Q Consensus 198 ~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~-~~~~P~~-----R~~~~~~~~-~--~~Iyv~GG~~~~~~~~~~~~~~~ 268 (602)
. ..+++.+-...+|+.+.... ...+|.+ ...+.+++. . +.||+..+
T Consensus 198 ~----------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~--------------- 252 (394)
T 3b7f_A 198 S----------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH--------------- 252 (394)
T ss_dssp T----------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET---------------
T ss_pred C----------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC---------------
Confidence 1 24777766678899885421 1112221 223444444 2 67777421
Q ss_pred ceeeeEEEEeCCCCeeEEeecCCCCCCC--CceeEEEEE---CCeEEEe
Q 007468 269 IIHSDLWSLDPRTWEWSKVKKIGMPPGP--RAGFSMCVH---KKRALLF 312 (602)
Q Consensus 269 ~~~~dv~~yd~~t~~W~~l~~~g~~P~~--R~~~s~~~~---~~~lyv~ 312 (602)
..|++++-...+|+.+... .|.. ...+++++. .+.||+.
T Consensus 253 ---~gl~~s~D~G~tW~~~~~~--l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 253 ---CGIYRMDRREGVWKRIGDA--MPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp ---TEEEEEETTTTEEECGGGG--SCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred ---CeEEEeCCCCCcceECCCC--CCCCCccceEEEEECCCCCCEEEEE
Confidence 1278888888999998641 1321 334455543 4667775
No 208
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=89.92 E-value=16 Score=35.95 Aligned_cols=173 Identities=10% Similarity=-0.080 Sum_probs=85.9
Q ss_pred CcEEEEEcCCCcEEEecCCCCC----------------CCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEE
Q 007468 101 GDLYRYDVEKQEWKVISSPNSP----------------PPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLD 162 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P----------------~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd 162 (602)
+.|++|++.+..+..+...... ....-+++++. ++.|||.-.. ..+++||
T Consensus 40 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~------------~~i~~~d 107 (322)
T 2fp8_A 40 GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY------------YHLSVVG 107 (322)
T ss_dssp SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT------------TEEEEEC
T ss_pred CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC------------CCEEEEe
Confidence 4688999988877755321100 00123455555 5789987431 2378888
Q ss_pred CCCCcEEEcccCCC-CCCCcccEEEEE--CCEEEEEcCccCCC-CC-------eeeeceEEEEECCCCceEEeccCCCCC
Q 007468 163 LKTNQWEQLNLKGC-PSPRSGHRMVLY--KHKIIVFGGFYDTL-RE-------VRYYNDLYVFDLDQFKWQEIKPRFGSM 231 (602)
Q Consensus 163 ~~t~~W~~~~~~~~-p~~R~~h~~~~~--~~~Lyv~GG~~~~~-~~-------~~~~~~v~~yd~~t~~W~~v~~~~~~~ 231 (602)
+.+...+.+..... .....-+.+++. ++.||+.-...... +. ......+++||+.+.....+...
T Consensus 108 ~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~---- 183 (322)
T 2fp8_A 108 SEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE---- 183 (322)
T ss_dssp TTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE----
T ss_pred CCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC----
Confidence 88766555432100 001122233333 46888863211000 00 00125699999988776554322
Q ss_pred CCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCC---CeeEEeecCCCCCCCCceeEEEEE-
Q 007468 232 WPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT---WEWSKVKKIGMPPGPRAGFSMCVH- 305 (602)
Q Consensus 232 ~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t---~~W~~l~~~g~~P~~R~~~s~~~~- 305 (602)
+..| ..+++. ++.|||.-... +.|++|++.. ..+..+... |. -..+++-
T Consensus 184 ~~~p---~gia~~~dg~~lyv~d~~~----------------~~I~~~~~~~~~~~~~~~~~~~---~g---P~gi~~d~ 238 (322)
T 2fp8_A 184 LHVP---GGAEVSADSSFVLVAEFLS----------------HQIVKYWLEGPKKGTAEVLVKI---PN---PGNIKRNA 238 (322)
T ss_dssp ESCC---CEEEECTTSSEEEEEEGGG----------------TEEEEEESSSTTTTCEEEEEEC---SS---EEEEEECT
T ss_pred CccC---cceEECCCCCEEEEEeCCC----------------CeEEEEECCCCcCCccceEEeC---CC---CCCeEECC
Confidence 0111 223443 34688864332 2488888764 234433321 21 2234443
Q ss_pred CCeEEEecc
Q 007468 306 KKRALLFGG 314 (602)
Q Consensus 306 ~~~lyv~GG 314 (602)
++.|||...
T Consensus 239 ~G~l~va~~ 247 (322)
T 2fp8_A 239 DGHFWVSSS 247 (322)
T ss_dssp TSCEEEEEE
T ss_pred CCCEEEEec
Confidence 467887643
No 209
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=89.75 E-value=7.3 Score=46.34 Aligned_cols=149 Identities=13% Similarity=0.038 Sum_probs=77.7
Q ss_pred EEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCc
Q 007468 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQER 151 (602)
Q Consensus 74 ~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~ 151 (602)
+++.| ++.+++.||. -+.|.+||..+......-... ...-.++.+ ++.+++.|+.+
T Consensus 621 ~~~s~--~~~~l~s~~~---------d~~i~vw~~~~~~~~~~~~~h----~~~v~~~~~s~~~~~l~s~~~d------- 678 (1249)
T 3sfz_A 621 ACFSQ--DGQRIASCGA---------DKTLQVFKAETGEKLLDIKAH----EDEVLCCAFSSDDSYIATCSAD------- 678 (1249)
T ss_dssp EEECT--TSSEEEEEET---------TSCEEEEETTTCCEEEEECCC----SSCEEEEEECTTSSEEEEEETT-------
T ss_pred EEECC--CCCEEEEEeC---------CCeEEEEECCCCCEEEEeccC----CCCEEEEEEecCCCEEEEEeCC-------
Confidence 34444 5677777772 246889999887654332211 112223333 45566666642
Q ss_pred ceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE----CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccC
Q 007468 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (602)
Q Consensus 152 ~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~----~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~ 227 (602)
..+.+||+.+.+....-. .....-.++.+ +..+++.|+.+ ..+.+||+.+......-..
T Consensus 679 ----~~v~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~sg~~d---------~~v~vwd~~~~~~~~~~~~ 741 (1249)
T 3sfz_A 679 ----KKVKIWDSATGKLVHTYD----EHSEQVNCCHFTNKSNHLLLATGSND---------FFLKLWDLNQKECRNTMFG 741 (1249)
T ss_dssp ----SEEEEEETTTCCEEEEEE----CCSSCEEEEEECSSSSCCEEEEEETT---------SCEEEEETTSSSEEEEECC
T ss_pred ----CeEEEEECCCCceEEEEc----CCCCcEEEEEEecCCCceEEEEEeCC---------CeEEEEECCCcchhheecC
Confidence 358889998876433221 11112222333 33455555543 4588899887754332211
Q ss_pred CCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCe
Q 007468 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (602)
Q Consensus 228 ~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (602)
... .-.+++.. ++.+++.|+.++. +.+||+.+..
T Consensus 742 -----h~~-~v~~~~~sp~~~~l~s~s~dg~----------------v~vwd~~~~~ 776 (1249)
T 3sfz_A 742 -----HTN-SVNHCRFSPDDELLASCSADGT----------------LRLWDVRSAN 776 (1249)
T ss_dssp -----CSS-CEEEEEECSSTTEEEEEESSSE----------------EEEEEGGGTE
T ss_pred -----CCC-CEEEEEEecCCCEEEEEECCCe----------------EEEEeCCCCc
Confidence 111 11122222 5667777776654 6677766553
No 210
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=89.72 E-value=4.3 Score=40.78 Aligned_cols=111 Identities=11% Similarity=0.107 Sum_probs=58.5
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~ 179 (602)
..|+++|+.+.+-..+... ..+..+.+..- ++..+++....... .....+|.+|+.+.....+.. ....
T Consensus 168 ~~l~~~d~~~g~~~~l~~~---~~~~~~~~~sp~dg~~l~~~~~~~~~-----~~~~~l~~~d~~~~~~~~l~~--~~~~ 237 (388)
T 3pe7_A 168 CRLMRVDLKTGESTVILQE---NQWLGHPIYRPYDDSTVAFCHEGPHD-----LVDARMWLINEDGTNMRKVKT--HAEG 237 (388)
T ss_dssp EEEEEEETTTCCEEEEEEE---SSCEEEEEEETTEEEEEEEEECSCTT-----TSSCSEEEEETTSCCCEESCC--CCTT
T ss_pred ceEEEEECCCCceEEeecC---CccccccEECCCCCCEEEEEEecCCC-----CCcceEEEEeCCCCceEEeee--CCCC
Confidence 5799999999887776532 12233333333 34444443221110 124579999998877666644 1111
Q ss_pred CcccEEEEE--CCE-EEEEcCccCCCCCeeeeceEEEEECCCCceEEeccC
Q 007468 180 RSGHRMVLY--KHK-IIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (602)
Q Consensus 180 R~~h~~~~~--~~~-Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~ 227 (602)
.......+ +++ |+........ ....++++|+.+..-+.+...
T Consensus 238 -~~~~~~~~spdg~~l~~~~~~~~~-----~~~~l~~~d~~~g~~~~l~~~ 282 (388)
T 3pe7_A 238 -ESCTHEFWVPDGSALVYVSYLKGS-----PDRFIYSADPETLENRQLTSM 282 (388)
T ss_dssp -EEEEEEEECTTSSCEEEEEEETTC-----CCEEEEEECTTTCCEEEEEEE
T ss_pred -cccccceECCCCCEEEEEecCCCC-----CcceEEEEecCCCceEEEEcC
Confidence 11112233 444 4333221111 113599999999887776554
No 211
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=89.41 E-value=13 Score=34.40 Aligned_cols=145 Identities=17% Similarity=0.355 Sum_probs=77.6
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCC--CcEEE--ecC--CCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcc
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEK--QEWKV--ISS--PNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERF 152 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~--~~W~~--l~~--~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~ 152 (602)
++++|+|=|. .+|+|+... ..... +.. +.+|. .--++... ++++|+|-|
T Consensus 16 ~g~~yfFkg~-----------~~Wr~~~~~~~~~~~p~~Is~~w~glP~--~IDAa~~~~~~~~~yfFkG---------- 72 (195)
T 1itv_A 16 GNQLYLFKDG-----------KYWRFSEGRGSRPQGPFLIADKWPALPR--KLDSVFEEPLSKKLFFFSG---------- 72 (195)
T ss_dssp TTEEEEEETT-----------EEEEECCSSSCCCEEEEEHHHHCTTSCS--SCSEEEECTTTCCEEEEET----------
T ss_pred CCEEEEEECC-----------EEEEEECCccccCCCcEEhhhccCCCCC--CccEEEEECCCCeEEEEeC----------
Confidence 7899999873 678887655 22221 211 22332 22233333 578999987
Q ss_pred eecCeEEEEECCCCcE-EEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceE-----Ee
Q 007468 153 HHYKDFWMLDLKTNQW-EQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-----EI 224 (602)
Q Consensus 153 ~~~~dv~~yd~~t~~W-~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~-----~v 224 (602)
+.+|+|+..+..- ..+...|+|..-...-+++. ++++|+|-| +..|+||..+.+-. .+
T Consensus 73 ---~~yw~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg-----------~~ywr~d~~~~~~~~gyPr~i 138 (195)
T 1itv_A 73 ---RQVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG-----------RRLWRFDVKAQMVDPRSASEV 138 (195)
T ss_dssp ---TEEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET-----------TEEEEEETTTTEECGGGCEEH
T ss_pred ---CEEEEEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeC-----------CEEEEEeCCcccccCCCccCh
Confidence 3578887543211 11222234542222223332 679999977 46799998764311 11
Q ss_pred ccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCe
Q 007468 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (602)
Q Consensus 225 ~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (602)
.....+ +|. .-.++...++.+|+|-|. ..|+||..+..
T Consensus 139 ~~~w~G-vp~--~idaa~~~~g~~Yffkg~------------------~y~~~~~~~~~ 176 (195)
T 1itv_A 139 DRMFPG-VPL--DTHDVFQFREKAYFCQDR------------------FYWRVSSRSEL 176 (195)
T ss_dssp HHHSTT-SCS--SCSEEEEETTEEEEEETT------------------EEEEEECCTTC
T ss_pred hhcCCC-CCC--CCCEEEEeCCeEEEEeCC------------------EEEEEECCccE
Confidence 111111 122 122344457999999774 27888876654
No 212
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=89.38 E-value=13 Score=41.73 Aligned_cols=150 Identities=12% Similarity=0.040 Sum_probs=81.9
Q ss_pred eCcEEEEEcCCC--c-EEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCC--CcEEEcccC
Q 007468 100 YGDLYRYDVEKQ--E-WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT--NQWEQLNLK 174 (602)
Q Consensus 100 ~~dv~~yd~~~~--~-W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t--~~W~~~~~~ 174 (602)
.+.+|++|+.+. . |..+.... ..... .+...++.||+...... ....++++|+.+ ..|..+.+.
T Consensus 293 ~~~l~~~d~~~~~~~~~~~l~~~~--~~~~~-~~~~dg~~l~~~s~~~~--------~~~~l~~~d~~~~~~~~~~l~~~ 361 (741)
T 1yr2_A 293 VNTVHVARVTNGKIGPVTALIPDL--KAQWD-FVDGVGDQLWFVSGDGA--------PLKKIVRVDLSGSTPRFDTVVPE 361 (741)
T ss_dssp CCEEEEEEEETTEECCCEEEECSS--SSCEE-EEEEETTEEEEEECTTC--------TTCEEEEEECSSSSCEEEEEECC
T ss_pred cceEEEEECCCCCCcccEEecCCC--CceEE-EEeccCCEEEEEECCCC--------CCCEEEEEeCCCCccccEEEecC
Confidence 468999999887 6 88886432 12222 22345778888765421 135689999988 579887642
Q ss_pred CCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe-C-CEEEEEc
Q 007468 175 GCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-Q-DEVFLYG 252 (602)
Q Consensus 175 ~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~-~~Iyv~G 252 (602)
. . ..-......+++|++....+. ...++.+++....-..+.. |....-...... + +.|++..
T Consensus 362 ~-~--~~l~~~~~~~~~lv~~~~~dg-------~~~l~~~~~~g~~~~~l~~------~~~~~v~~~~~s~d~~~l~~~~ 425 (741)
T 1yr2_A 362 S-K--DNLESVGIAGNRLFASYIHDA-------KSQVLAFDLDGKPAGAVSL------PGIGSASGLSGRPGDRHAYLSF 425 (741)
T ss_dssp C-S--SEEEEEEEEBTEEEEEEEETT-------EEEEEEEETTSCEEEECBC------SSSCEEEEEECCBTCSCEEEEE
T ss_pred C-C--CeEEEEEEECCEEEEEEEECC-------EEEEEEEeCCCCceeeccC------CCCeEEEEeecCCCCCEEEEEE
Confidence 1 1 111123334778877765433 4578889875543333321 211111111111 2 2333321
Q ss_pred CccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeec
Q 007468 253 GYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (602)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 289 (602)
.+. ..-..+|.||+.+...+.+..
T Consensus 426 -ss~------------~~P~~i~~~d~~tg~~~~l~~ 449 (741)
T 1yr2_A 426 -SSF------------TQPATVLALDPATAKTTPWEP 449 (741)
T ss_dssp -EET------------TEEEEEEEEETTTTEEEECSC
T ss_pred -cCC------------CCCCEEEEEECCCCcEEEEec
Confidence 111 233568999998887766643
No 213
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=89.13 E-value=17 Score=35.39 Aligned_cols=105 Identities=12% Similarity=0.066 Sum_probs=55.6
Q ss_pred CEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEE
Q 007468 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWM 160 (602)
Q Consensus 82 ~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~~ 160 (602)
+.+++.|+. -..+.+||..+........... ....-.+++.. ++.+++.|+.. ..+.+
T Consensus 54 g~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d-----------g~v~i 112 (368)
T 3mmy_A 54 GNFLIAGSW---------ANDVRCWEVQDSGQTIPKAQQM-HTGPVLDVCWSDDGSKVFTASCD-----------KTAKM 112 (368)
T ss_dssp SEEEEEEET---------TSEEEEEEECTTSCEEEEEEEE-CSSCEEEEEECTTSSEEEEEETT-----------SEEEE
T ss_pred ceEEEEECC---------CCcEEEEEcCCCCceeEEEecc-ccCCEEEEEECcCCCEEEEEcCC-----------CcEEE
Confidence 478888873 2468888888633221111000 11111222222 45566666542 35888
Q ss_pred EECCCCcEEEcccCCCCCCCcccEEEE---ECCEEEEEcCccCCCCCeeeeceEEEEECCCCc
Q 007468 161 LDLKTNQWEQLNLKGCPSPRSGHRMVL---YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (602)
Q Consensus 161 yd~~t~~W~~~~~~~~p~~R~~h~~~~---~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~ 220 (602)
||+.+.....+.. .. ..-.+++. -++.+++.|+.+ ..+.+||+.+..
T Consensus 113 wd~~~~~~~~~~~--~~--~~v~~~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~~ 162 (368)
T 3mmy_A 113 WDLSSNQAIQIAQ--HD--APVKTIHWIKAPNYSCVMTGSWD---------KTLKFWDTRSSN 162 (368)
T ss_dssp EETTTTEEEEEEE--CS--SCEEEEEEEECSSCEEEEEEETT---------SEEEEECSSCSS
T ss_pred EEcCCCCceeecc--cc--CceEEEEEEeCCCCCEEEEccCC---------CcEEEEECCCCc
Confidence 9998887655432 11 11122222 256777777753 468889987764
No 214
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=89.09 E-value=2.9 Score=41.13 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=40.6
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE-C-CEEEEEcCccCCCCCeeeeceE
Q 007468 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDL 211 (602)
Q Consensus 134 ~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~-~~Lyv~GG~~~~~~~~~~~~~v 211 (602)
++.+|+.++. ...++++|+.+.+....-. .+....-+.+++. + +.+|+.+.. ...+
T Consensus 10 ~~~~~v~~~~-----------~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~~~v~~~~---------~~~i 67 (349)
T 1jmx_B 10 GHEYMIVTNY-----------PNNLHVVDVASDTVYKSCV--MPDKFGPGTAMMAPDNRTAYVLNNH---------YGDI 67 (349)
T ss_dssp TCEEEEEEET-----------TTEEEEEETTTTEEEEEEE--CSSCCSSCEEEECTTSSEEEEEETT---------TTEE
T ss_pred CCEEEEEeCC-----------CCeEEEEECCCCcEEEEEe--cCCCCCCceeEECCCCCEEEEEeCC---------CCcE
Confidence 5677887764 2568999999887643322 1211122333333 3 467777642 2579
Q ss_pred EEEECCCCceEE
Q 007468 212 YVFDLDQFKWQE 223 (602)
Q Consensus 212 ~~yd~~t~~W~~ 223 (602)
++||+.+.+...
T Consensus 68 ~~~d~~t~~~~~ 79 (349)
T 1jmx_B 68 YGIDLDTCKNTF 79 (349)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEeCCCCcEEE
Confidence 999998876543
No 215
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=89.00 E-value=3.9 Score=38.57 Aligned_cols=105 Identities=13% Similarity=0.160 Sum_probs=60.0
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcE---EEecCCCCCCCceeeEEEE-E--CCEEEEEeCccCCCCCCccee
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW---KVISSPNSPPPRSAHQAVS-W--KNYLYIFGGEFTSPNQERFHH 154 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W---~~l~~~~~P~~R~~hs~~~-~--~~~iyV~GG~~~~~~~~~~~~ 154 (602)
+++||+|=| +.+|+|+..+-.- +.|....+|..-..--||+ . ++++|+|-|
T Consensus 79 ~~~iyfFkG-----------~~~w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG------------ 135 (207)
T 1pex_A 79 HDLIFIFRG-----------RKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG------------ 135 (207)
T ss_dssp TTEEEEEET-----------TEEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET------------
T ss_pred CCcEEEEcc-----------CEEEEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC------------
Confidence 489999988 3567776332111 2333322332211222333 3 479999987
Q ss_pred cCeEEEEECCCCcEEEccc-------CCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceE
Q 007468 155 YKDFWMLDLKTNQWEQLNL-------KGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (602)
Q Consensus 155 ~~dv~~yd~~t~~W~~~~~-------~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~ 222 (602)
+..|+||..+++-..--+ .++| ..-.++...++++|+|-| +..|+||..+.+-.
T Consensus 136 -~~ywr~d~~~~~~d~gyPr~i~~~~~Gip--~~iDaAf~~~g~~YfFkg-----------~~y~rf~~~~~~v~ 196 (207)
T 1pex_A 136 -NQVWRYDDTNHIMDKDYPRLIEEDFPGIG--DKVDAVYEKNGYIYFFNG-----------PIQFEYSIWSNRIV 196 (207)
T ss_dssp -TEEEEEETTTTEECSSCCCBHHHHSTTSC--SCCSEEEEETTEEEEEET-----------TEEEEEETTTTEEE
T ss_pred -CEEEEEeCcCccccCCCCccHHHcCCCCC--CCccEEEEcCCcEEEEEC-----------CEEEEEeCCccEEe
Confidence 457999998764221101 1122 223455567999999977 46888988776543
No 216
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=88.92 E-value=12 Score=37.90 Aligned_cols=142 Identities=13% Similarity=0.048 Sum_probs=72.0
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccc-EEEEE---CCEEEEEcCccCCCCCeeeeceEEEEECCCC--ceEEeccCCC
Q 007468 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGH-RMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQEIKPRFG 229 (602)
Q Consensus 156 ~dv~~yd~~t~~W~~~~~~~~p~~R~~h-~~~~~---~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~--~W~~v~~~~~ 229 (602)
..+.+||+.+..-...-....+...... .++.+ ++.+++.|+.+ ..+.+||+... .-..+...
T Consensus 180 ~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D---------~~v~~wd~~~~~~~~~~~~~h-- 248 (380)
T 3iz6_a 180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD---------TTVRLWDLRITSRAVRTYHGH-- 248 (380)
T ss_dssp SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT---------SCEEEEETTTTCCCCEEECCC--
T ss_pred CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC---------CeEEEEECCCCCcceEEECCc--
Confidence 3477889888765433211112211111 12222 56788888864 35778887532 11222111
Q ss_pred CCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCC--CCCC-ceeEEEEE
Q 007468 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMP--PGPR-AGFSMCVH 305 (602)
Q Consensus 230 ~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~--P~~R-~~~s~~~~ 305 (602)
.. .-.+++.. ++..++.|+.++. +.+||+.+..-...-..... .... .-.++++.
T Consensus 249 ----~~-~v~~v~~~p~~~~l~s~s~D~~----------------i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 307 (380)
T 3iz6_a 249 ----EG-DINSVKFFPDGQRFGTGSDDGT----------------CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS 307 (380)
T ss_dssp ----SS-CCCEEEECTTSSEEEEECSSSC----------------EEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC
T ss_pred ----CC-CeEEEEEecCCCeEEEEcCCCe----------------EEEEECCCCcEEEEecccccccccccCceEEEEEC
Confidence 01 11122223 6678888888776 78888877654333211000 0000 12233333
Q ss_pred -CCeEEEeccccccccccccccccccCeeEEEECCCCce
Q 007468 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (602)
Q Consensus 306 -~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W 343 (602)
++++++.|+.+ ..|++||+.+..-
T Consensus 308 ~~g~~l~~g~~d--------------g~i~vwd~~~~~~ 332 (380)
T 3iz6_a 308 ISGRLLFAGYSN--------------GDCYVWDTLLAEM 332 (380)
T ss_dssp SSSSEEEEECTT--------------SCEEEEETTTCCE
T ss_pred CCCCEEEEEECC--------------CCEEEEECCCCce
Confidence 67777777653 3589999876543
No 217
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=88.80 E-value=18 Score=35.08 Aligned_cols=90 Identities=12% Similarity=0.286 Sum_probs=44.4
Q ss_pred CcEEEEEcC-CCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCC-cEEEcccCCCC
Q 007468 101 GDLYRYDVE-KQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN-QWEQLNLKGCP 177 (602)
Q Consensus 101 ~dv~~yd~~-~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~-~W~~~~~~~~p 177 (602)
..+++||+. ...|...... + ...+.+.. ++.||+.. . ...+++||+... .|.....
T Consensus 117 ~~l~~~d~~g~~~~~~~~~~----~-~~~~~~~~~~g~l~vgt-~-----------~~~l~~~d~~g~~~~~~~~~---- 175 (330)
T 3hxj_A 117 GHLYAINTDGTEKWRFKTKK----A-IYATPIVSEDGTIYVGS-N-----------DNYLYAINPDGTEKWRFKTN---- 175 (330)
T ss_dssp SEEEEECTTSCEEEEEECSS----C-CCSCCEECTTSCEEEEC-T-----------TSEEEEECTTSCEEEEEECS----
T ss_pred CEEEEEcCCCCEEEEEcCCC----c-eeeeeEEcCCCEEEEEc-C-----------CCEEEEECCCCCEeEEEecC----
Confidence 367888887 3356644221 1 11222333 56666632 1 145788888722 3654322
Q ss_pred CCCcccEEEE-ECCEEEEEcCccCCCCCeeeeceEEEEECCC-CceEEe
Q 007468 178 SPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQEI 224 (602)
Q Consensus 178 ~~R~~h~~~~-~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t-~~W~~v 224 (602)
... ..+.+. -++.||+.. ..+++||... ..|+..
T Consensus 176 ~~~-~~~~~~d~~g~l~v~t------------~~l~~~d~~g~~~~~~~ 211 (330)
T 3hxj_A 176 DAI-TSAASIGKDGTIYFGS------------DKVYAINPDGTEKWNFY 211 (330)
T ss_dssp SCC-CSCCEECTTCCEEEES------------SSEEEECTTSCEEEEEC
T ss_pred CCc-eeeeEEcCCCEEEEEe------------CEEEEECCCCcEEEEEc
Confidence 111 122333 366777643 2477888432 346543
No 218
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=88.65 E-value=24 Score=36.42 Aligned_cols=218 Identities=14% Similarity=0.156 Sum_probs=109.7
Q ss_pred CCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECC----CCc-EEEcccCCCCCCCcccE
Q 007468 110 KQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLK----TNQ-WEQLNLKGCPSPRSGHR 184 (602)
Q Consensus 110 ~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~----t~~-W~~~~~~~~p~~R~~h~ 184 (602)
.+.|+...-+..|..-.-|+.+.+++.-|.+|=.++.-.. ..+ .+..|... .+. =..++.. ....-+-.|
T Consensus 269 ~spW~~t~L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~P---Re~-G~~yfs~~~~sp~~~vrr~i~se-y~~~AsEPC 343 (670)
T 3ju4_A 269 KSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAP---REV-GLFYFPDAFNSPSNYVRRQIPSE-YEPDASEPC 343 (670)
T ss_dssp TSCCEEEECCSCTTCSEEEEEEECSSSCEEEEEEECSSSS---CEE-EEEEETTTTTCTTCCEEEECCGG-GCTTEEEEE
T ss_pred cCCceecccccccceeeeeeeeEecCCceEEEeccCCCCc---cee-eEEEecccccCCcceeeeechhh-hccccccch
Confidence 4457765555567778899999998888888743332211 111 12222111 111 1222221 111223334
Q ss_pred EEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCC-C--Cc
Q 007468 185 MVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEV-S--TD 261 (602)
Q Consensus 185 ~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~-~--~~ 261 (602)
.-.+++.||++---... .+.-+.+.+-+..-..|..+.... .......-.+..++.||+||--.... . ..
T Consensus 344 vkyYdgvLyLtTRgt~~---~~~GS~L~rs~d~Gq~w~slrfp~----nvHhtnlPFakvgD~l~mFgsERA~nEWE~G~ 416 (670)
T 3ju4_A 344 IKYYDGVLYLITRGTRG---DRLGSSLHRSRDIGQTWESLRFPH----NVHHTTLPFAKVGDDLIMFGSERAENEWEAGA 416 (670)
T ss_dssp EEEETTEEEEEEEESCT---TSCCCEEEEESSTTSSCEEEECTT----CCCSSCCCEEEETTEEEEEEECSSTTCSSTTC
T ss_pred hhhhCCEEEEEecCcCC---CCCcceeeeecccCCchhheeccc----cccccCCCcceeCCEEEEEeccccccccccCC
Confidence 45569999998532221 123456777777778899987641 22233334566799999999643220 0 00
Q ss_pred cCCCCCCc-eeeeEEEEeC-----CCCeeEEeecC---CCCCCCCceeEEEEE-CCeEE-Eecccccccc--------cc
Q 007468 262 KNQSEKGI-IHSDLWSLDP-----RTWEWSKVKKI---GMPPGPRAGFSMCVH-KKRAL-LFGGVVDMEM--------KG 322 (602)
Q Consensus 262 ~~~~~~~~-~~~dv~~yd~-----~t~~W~~l~~~---g~~P~~R~~~s~~~~-~~~ly-v~GG~~~~~~--------~~ 322 (602)
..+...+. +..=+.+.++ ..-.|..+... |..-..-.+.+.+++ ++.|| ||||.+-... ..
T Consensus 417 pD~RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgEd~~np~s~gdN~~k~ 496 (670)
T 3ju4_A 417 PDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDNSAKD 496 (670)
T ss_dssp CCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEBCSCCCCTTTTTTTCC
T ss_pred CcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCcccCCccccccccccC
Confidence 00111111 1111223343 34468777542 333334445554444 66654 7998643211 01
Q ss_pred ccccccccCeeEEEECC
Q 007468 323 DVIMSLFLNELYGFQLD 339 (602)
Q Consensus 323 ~~~~~~~~ndv~~yd~~ 339 (602)
..-....-.|||+|-+.
T Consensus 497 ~~~~~Ghp~dlY~~ri~ 513 (670)
T 3ju4_A 497 PFKSDGHPSDLYCYKMK 513 (670)
T ss_dssp TTSTTCCCCEEEEEEEE
T ss_pred ccccCCCCcceEEEEEE
Confidence 11123456789999753
No 219
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=88.46 E-value=15 Score=36.93 Aligned_cols=131 Identities=9% Similarity=-0.028 Sum_probs=64.6
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCceeeEEEE--ECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCC
Q 007468 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVS--WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (602)
Q Consensus 102 dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~--~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~ 179 (602)
.+.+++..+.......... .......++. -++..++.++..... ...++.++.....+...........
T Consensus 198 ~~~~~~~~~~~~~~~~~~~--~~~~~v~~v~fspdg~~l~~~s~d~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~ 268 (365)
T 4h5i_A 198 SLEVISTVTGSCIARKTDF--DKNWSLSKINFIADDTVLIAASLKKGK-------GIVLTKISIKSGNTSVLRSKQVTNR 268 (365)
T ss_dssp CEEEEETTTCCEEEEECCC--CTTEEEEEEEEEETTEEEEEEEESSSC-------CEEEEEEEEETTEEEEEEEEEEESS
T ss_pred eEEEEEeccCcceeeeecC--CCCCCEEEEEEcCCCCEEEEEecCCcc-------eeEEeecccccceecceeeeeecCC
Confidence 4566666666554332211 1122222222 267777777654321 1246677776665543322111111
Q ss_pred CcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCcc-ceeEEEe--CCEEEEEcCc
Q 007468 180 RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS-GFQFFVY--QDEVFLYGGY 254 (602)
Q Consensus 180 R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~-~~~~~~~--~~~Iyv~GG~ 254 (602)
...-.++.+ ++++++.|+.+ ..|.+||+.+.+- +... ..+.. .-..+.+ ++++++.|+.
T Consensus 269 ~~~V~~~~~Spdg~~lasgs~D---------~~V~iwd~~~~~~--~~~~-----~~gH~~~V~~v~fSpdg~~laS~S~ 332 (365)
T 4h5i_A 269 FKGITSMDVDMKGELAVLASND---------NSIALVKLKDLSM--SKIF-----KQAHSFAITEVTISPDSTYVASVSA 332 (365)
T ss_dssp CSCEEEEEECTTSCEEEEEETT---------SCEEEEETTTTEE--EEEE-----TTSSSSCEEEEEECTTSCEEEEEET
T ss_pred CCCeEeEEECCCCCceEEEcCC---------CEEEEEECCCCcE--EEEe-----cCcccCCEEEEEECCCCCEEEEEeC
Confidence 111223333 67888888864 3688899887642 2221 11111 1122223 7788888887
Q ss_pred cCC
Q 007468 255 SKE 257 (602)
Q Consensus 255 ~~~ 257 (602)
++.
T Consensus 333 D~t 335 (365)
T 4h5i_A 333 ANT 335 (365)
T ss_dssp TSE
T ss_pred CCe
Confidence 765
No 220
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=87.92 E-value=28 Score=36.83 Aligned_cols=179 Identities=7% Similarity=-0.004 Sum_probs=84.4
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv 158 (602)
+++.++.|+. -..+.+||........+.... ..-.++.+ ++..++.|+.. ..+
T Consensus 355 ~g~~l~~~~~---------dg~v~~~~~~~~~~~~~~~~~-----~~v~~~~~s~dg~~l~~~~~d-----------~~v 409 (577)
T 2ymu_A 355 DGQTIASASD---------DKTVKLWNRNGQLLQTLTGHS-----SSVRGVAFSPDGQTIASASDD-----------KTV 409 (577)
T ss_dssp TSSEEEEEET---------TSEEEEEETTCCEEEEEECCS-----SCEEEEEECTTSSCEEEEETT-----------SEE
T ss_pred CCCEEEEEeC---------CCEEEEEcCCCCEEEEecCCC-----CCeEEEEECCCCCEEEEEeCC-----------CEE
Confidence 4556666552 124667776554444443211 11122233 45566666542 346
Q ss_pred EEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCc
Q 007468 159 WMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR 236 (602)
Q Consensus 159 ~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R 236 (602)
.+||.....-..+.. .... -.++.+ ++++++.++.+ ..+..||.....-..+... ..
T Consensus 410 ~~~~~~~~~~~~~~~---~~~~--v~~~~~s~d~~~l~~~~~d---------~~v~~w~~~~~~~~~~~~~-------~~ 468 (577)
T 2ymu_A 410 KLWNRNGQLLQTLTG---HSSS--VWGVAFSPDDQTIASASDD---------KTVKLWNRNGQLLQTLTGH-------SS 468 (577)
T ss_dssp EEECTTCCEEEEEEC---CSSC--EEEEEECTTSSEEEEEETT---------SEEEEEETTSCEEEEEECC-------SS
T ss_pred EEEeCCCCEEEEecC---CCCC--eEEEEECCCCCEEEEEcCC---------CEEEEEECCCCEEEEEcCC-------CC
Confidence 677754433333221 1111 112222 56666666643 3577788755443333322 11
Q ss_pred cceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEecc
Q 007468 237 SGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGG 314 (602)
Q Consensus 237 ~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~GG 314 (602)
.-.+++.. ++++++.|+.++. +.+||.....-..+.. ... .-.++++. ++++++.|+
T Consensus 469 ~v~~~~~spd~~~las~~~d~~----------------i~iw~~~~~~~~~~~~----h~~-~v~~l~~s~dg~~l~s~~ 527 (577)
T 2ymu_A 469 SVRGVAFSPDGQTIASASDDKT----------------VKLWNRNGQLLQTLTG----HSS-SVRGVAFSPDGQTIASAS 527 (577)
T ss_dssp CEEEEEECTTSCEEEEEETTSE----------------EEEEETTSCEEEEEEC----CSS-CEEEEEECTTSSCEEEEE
T ss_pred CEEEEEEcCCCCEEEEEeCCCE----------------EEEEcCCCCEEEEEeC----CCC-CEEEEEEcCCCCEEEEEE
Confidence 11223333 6777777776554 6677754433222221 011 11233333 567777776
Q ss_pred ccccccccccccccccCeeEEEECCC
Q 007468 315 VVDMEMKGDVIMSLFLNELYGFQLDN 340 (602)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndv~~yd~~t 340 (602)
.+ ..|.+||...
T Consensus 528 ~d--------------g~v~lwd~~~ 539 (577)
T 2ymu_A 528 DD--------------KTVKLWNRNG 539 (577)
T ss_dssp TT--------------SEEEEECTTS
T ss_pred Cc--------------CEEEEEeCCC
Confidence 53 2477887543
No 221
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=87.87 E-value=14 Score=36.21 Aligned_cols=53 Identities=9% Similarity=0.039 Sum_probs=30.3
Q ss_pred CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEeccccc
Q 007468 245 QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVD 317 (602)
Q Consensus 245 ~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~GG~~~ 317 (602)
++.+++.|+.++. +.+||+.+..-...-. .....-.++++. ++++++.|+..+
T Consensus 284 ~~~~l~s~~~dg~----------------i~iwd~~~~~~~~~~~----~~~~~v~~~~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 284 VHGTLATVGSDGR----------------FSFWDKDARTKLKTSE----QLDQPISACCFNHNGNIFAYASSYD 337 (368)
T ss_dssp TTCCEEEEETTSC----------------EEEEETTTTEEEEECC----CCSSCEEEEEECTTSSCEEEEECCC
T ss_pred CCCEEEEEccCCe----------------EEEEECCCCcEEEEec----CCCCCceEEEECCCCCeEEEEeccc
Confidence 6677788887765 8889988764332211 111222334443 567777776543
No 222
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=87.55 E-value=20 Score=35.67 Aligned_cols=144 Identities=12% Similarity=-0.027 Sum_probs=77.7
Q ss_pred EEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCccc-EEEEE--CCEEEEEcCccCCCCCeeeeceEE
Q 007468 136 YLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGH-RMVLY--KHKIIVFGGFYDTLREVRYYNDLY 212 (602)
Q Consensus 136 ~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h-~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~ 212 (602)
.+++.|+.+ ..+.+||+.+........ .......- +++.. ++.+++.|+.+ ..+.
T Consensus 87 ~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~l~s~~~d---------~~i~ 144 (383)
T 3ei3_B 87 TTVAVGSKG-----------GDIILWDYDVQNKTSFIQ--GMGPGDAITGMKFNQFNTNQLFVSSIR---------GATT 144 (383)
T ss_dssp TEEEEEEBT-----------SCEEEEETTSTTCEEEEC--CCSTTCBEEEEEEETTEEEEEEEEETT---------TEEE
T ss_pred CEEEEEcCC-----------CeEEEEeCCCcccceeee--cCCcCCceeEEEeCCCCCCEEEEEeCC---------CEEE
Confidence 567777653 357889998877655432 11111122 22333 34677777653 4688
Q ss_pred EEECCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCC
Q 007468 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG 291 (602)
Q Consensus 213 ~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g 291 (602)
+||+.+.....+.... .....-.+++.. ++.+++.|+.++. +.+||+....-..+..
T Consensus 145 iwd~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~~~~~~~-- 202 (383)
T 3ei3_B 145 LRDFSGSVIQVFAKTD----SWDYWYCCVDVSVSRQMLATGDSTGR----------------LLLLGLDGHEIFKEKL-- 202 (383)
T ss_dssp EEETTSCEEEEEECCC----CSSCCEEEEEEETTTTEEEEEETTSE----------------EEEEETTSCEEEEEEC--
T ss_pred EEECCCCceEEEeccC----CCCCCeEEEEECCCCCEEEEECCCCC----------------EEEEECCCCEEEEecc--
Confidence 8999876666555431 111112223333 6667777776655 7888885544433332
Q ss_pred CCCCCCceeEEEEE-CCe-EEEeccccccccccccccccccCeeEEEECCC
Q 007468 292 MPPGPRAGFSMCVH-KKR-ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (602)
Q Consensus 292 ~~P~~R~~~s~~~~-~~~-lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t 340 (602)
....-.++++. .+. +++.|+.+ ..|.+||+.+
T Consensus 203 ---h~~~v~~~~~~~~~~~~l~s~~~d--------------~~i~iwd~~~ 236 (383)
T 3ei3_B 203 ---HKAKVTHAEFNPRCDWLMATSSVD--------------ATVKLWDLRN 236 (383)
T ss_dssp ---SSSCEEEEEECSSCTTEEEEEETT--------------SEEEEEEGGG
T ss_pred ---CCCcEEEEEECCCCCCEEEEEeCC--------------CEEEEEeCCC
Confidence 11122333333 344 77777653 3478888776
No 223
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=87.48 E-value=7.2 Score=43.17 Aligned_cols=113 Identities=8% Similarity=-0.032 Sum_probs=57.8
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCC
Q 007468 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (602)
Q Consensus 102 dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~ 179 (602)
.++++|+.+++-..+..... ........+.+ +++.++++....... .......++++|+.+.+-..+........
T Consensus 38 ~i~~~d~~~g~~~~~~~~~~-~~~~~v~~~~~SpDg~~l~~~~~~~~~~--~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 114 (723)
T 1xfd_A 38 TVRLWNVETNTSTVLIEGKK-IESLRAIRYEISPDREYALFSYNVEPIY--QHSYTGYYVLSKIPHGDPQSLDPPEVSNA 114 (723)
T ss_dssp CEEEBCGGGCCCEEEECTTT-TTTTTCSEEEECTTSSEEEEEESCCCCS--SSCCCSEEEEEESSSCCCEECCCTTCCSC
T ss_pred CEEEEECCCCcEEEEecccc-ccccccceEEECCCCCEEEEEecCccce--eecceeeEEEEECCCCceEeccCCccccc
Confidence 78889998877665543211 00001122233 455555554322111 01234789999999887665544211111
Q ss_pred CcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccC
Q 007468 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (602)
Q Consensus 180 R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~ 227 (602)
+..+.+..-+++.++|+.. ..|+++|+.+.....+...
T Consensus 115 ~~~~~~~SPdG~~la~~~~----------~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 115 KLQYAGWGPKGQQLIFIFE----------NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp CCSBCCBCSSTTCEEEEET----------TEEEEESSSSSCCEEEECC
T ss_pred cccccEECCCCCEEEEEEC----------CeEEEEECCCCceEEEecC
Confidence 1122222225555555442 3688899888777666543
No 224
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=87.02 E-value=23 Score=38.99 Aligned_cols=147 Identities=10% Similarity=0.024 Sum_probs=73.2
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceE
Q 007468 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (602)
Q Consensus 134 ~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v 211 (602)
++.+++.|+.+ ..+.+||+.+..-...-. ..... -.++.+ ++..++.|+.+ ..|
T Consensus 441 ~g~~l~sgs~D-----------g~v~vwd~~~~~~~~~~~--~h~~~--v~~~~~s~~~~~l~s~s~D---------~~i 496 (694)
T 3dm0_A 441 DGQFALSGSWD-----------GELRLWDLAAGVSTRRFV--GHTKD--VLSVAFSLDNRQIVSASRD---------RTI 496 (694)
T ss_dssp TSSEEEEEETT-----------SEEEEEETTTTEEEEEEE--CCSSC--EEEEEECTTSSCEEEEETT---------SCE
T ss_pred CCCEEEEEeCC-----------CcEEEEECCCCcceeEEe--CCCCC--EEEEEEeCCCCEEEEEeCC---------CEE
Confidence 46666777653 357888988775432211 11111 122222 45666666654 356
Q ss_pred EEEECCCCceEEeccCCCCCCCCCccceeEEEe--C--CEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe
Q 007468 212 YVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--Q--DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (602)
Q Consensus 212 ~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~--~--~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l 287 (602)
.+||+....-..+.... ...+....++.+ + ..+++.|+.++. |.+||+.+..-...
T Consensus 497 ~iwd~~~~~~~~~~~~~----~~h~~~v~~~~~~~~~~~~~l~s~s~d~~----------------v~vwd~~~~~~~~~ 556 (694)
T 3dm0_A 497 KLWNTLGECKYTISEGG----EGHRDWVSCVRFSPNTLQPTIVSASWDKT----------------VKVWNLSNCKLRST 556 (694)
T ss_dssp EEECTTSCEEEEECSST----TSCSSCEEEEEECSCSSSCEEEEEETTSC----------------EEEEETTTCCEEEE
T ss_pred EEEECCCCcceeeccCC----CCCCCcEEEEEEeCCCCcceEEEEeCCCe----------------EEEEECCCCcEEEE
Confidence 67776544222222210 111111222222 2 246777777665 77888876653332
Q ss_pred ecCCCCCCCCceeEEEEE-CCeEEEeccccccccccccccccccCeeEEEECCCCc
Q 007468 288 KKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 288 ~~~g~~P~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
-. + ....-.++++. ++++++.|+.++ .|.+||+.+.+
T Consensus 557 ~~-~---h~~~v~~v~~spdg~~l~sg~~Dg--------------~i~iwd~~~~~ 594 (694)
T 3dm0_A 557 LA-G---HTGYVSTVAVSPDGSLCASGGKDG--------------VVLLWDLAEGK 594 (694)
T ss_dssp EC-C---CSSCEEEEEECTTSSEEEEEETTS--------------BCEEEETTTTE
T ss_pred Ec-C---CCCCEEEEEEeCCCCEEEEEeCCC--------------eEEEEECCCCc
Confidence 11 1 11122233333 567778777643 47888887654
No 225
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=86.97 E-value=26 Score=36.13 Aligned_cols=17 Identities=12% Similarity=0.116 Sum_probs=12.6
Q ss_pred ceeEEEEE-CCeEEEecc
Q 007468 298 AGFSMCVH-KKRALLFGG 314 (602)
Q Consensus 298 ~~~s~~~~-~~~lyv~GG 314 (602)
..|++++. ++++|.+|-
T Consensus 286 ~~hs~alt~~G~v~~wG~ 303 (406)
T 4d9s_A 286 WRHTMALTSDGKLYGWGW 303 (406)
T ss_dssp SSEEEEEETTSCEEEEEC
T ss_pred CCEEEEEcCCCeEEEeeC
Confidence 45777776 678999984
No 226
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=86.83 E-value=32 Score=38.08 Aligned_cols=147 Identities=10% Similarity=-0.001 Sum_probs=82.1
Q ss_pred CeEEEEECCCC--cEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCC---ceEEeccCCCC
Q 007468 156 KDFWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF---KWQEIKPRFGS 230 (602)
Q Consensus 156 ~dv~~yd~~t~--~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~---~W~~v~~~~~~ 230 (602)
+.+|++|+.+. .|..+.. +...........+++||+...... ....|+.+++.+. .|+.+.+..
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~---~~~~~~~~~~~~g~~l~~~t~~~~------~~~~l~~~d~~~~~~~~~~~l~~~~-- 327 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQG---DLDADVSLVDNKGSTLYLLTNRDA------PNRRLVTVDAANPGPAHWRDLIPER-- 327 (693)
T ss_dssp CEEEEEETTSTTCCCEEEEC---SSSSCEEEEEEETTEEEEEECTTC------TTCEEEEEETTSCCGGGCEEEECCC--
T ss_pred cEEEEEECCCCCCceEEEeC---CCCceEEEEeccCCEEEEEECCCC------CCCEEEEEeCCCCCccccEEEecCC--
Confidence 58999998776 6777654 111111123345789998876432 1357999998763 488876652
Q ss_pred CCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-C-Ce
Q 007468 231 MWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-K-KR 308 (602)
Q Consensus 231 ~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~-~~ 308 (602)
.... .+...++.|++..-.++ ...++++++.......+.. |......+...- + +.
T Consensus 328 ---~~~~--~~s~~g~~lv~~~~~~g--------------~~~l~~~d~~g~~~~~l~~----p~~~~~~~~~~~~d~~~ 384 (693)
T 3iuj_A 328 ---QQVL--TVHSGSGYLFAEYMVDA--------------TARVEQFDYEGKRVREVAL----PGLGSVSGFNGKHDDPA 384 (693)
T ss_dssp ---SSCE--EEEEETTEEEEEEEETT--------------EEEEEEECTTSCEEEEECC----SSSSEEEECCCCTTCSC
T ss_pred ---CCEE--EEEEECCEEEEEEEECC--------------eeEEEEEECCCCeeEEeec----CCCceEEeeecCCCCCE
Confidence 1112 45555777765543322 2468899988665555532 221111111111 2 33
Q ss_pred EEEe-ccccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 309 ALLF-GGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 309 lyv~-GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
|++. .+.. .-..+|.||+.+..+..+..
T Consensus 385 l~~~~ss~~------------tP~~l~~~d~~~g~~~~l~~ 413 (693)
T 3iuj_A 385 LYFGFENYA------------QPPTLYRFEPKSGAISLYRA 413 (693)
T ss_dssp EEEEEECSS------------SCCEEEEECTTTCCEEEEEC
T ss_pred EEEEecCCC------------CCCEEEEEECCCCeEEEEEe
Confidence 3332 2211 23679999999888877664
No 227
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=86.79 E-value=4.1 Score=42.22 Aligned_cols=63 Identities=11% Similarity=0.153 Sum_probs=33.2
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCc-EEEcccCCCCCCCcccEEEEE---CCEEEEEcCccCCCCCeeeec
Q 007468 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYN 209 (602)
Q Consensus 134 ~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~-W~~~~~~~~p~~R~~h~~~~~---~~~Lyv~GG~~~~~~~~~~~~ 209 (602)
++.+++.|+.. ..+.+||+.+.. ...+.. .......-.++.+ +..+++.|+.+ .
T Consensus 243 ~~~~l~s~~~d-----------g~i~i~d~~~~~~~~~~~~--~~~~~~~v~~i~~~p~~~~~l~tg~~d---------g 300 (430)
T 2xyi_A 243 HESLFGSVADD-----------QKLMIWDTRNNNTSKPSHT--VDAHTAEVNCLSFNPYSEFILATGSAD---------K 300 (430)
T ss_dssp CTTEEEEEETT-----------SEEEEEETTCSCSSSCSEE--EECCSSCEEEEEECSSCTTEEEEEETT---------S
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCCCCcceeE--eecCCCCeEEEEeCCCCCCEEEEEeCC---------C
Confidence 45677676642 458889988652 000000 0011112223333 33588888764 4
Q ss_pred eEEEEECCC
Q 007468 210 DLYVFDLDQ 218 (602)
Q Consensus 210 ~v~~yd~~t 218 (602)
.|.+||+.+
T Consensus 301 ~v~vwd~~~ 309 (430)
T 2xyi_A 301 TVALWDLRN 309 (430)
T ss_dssp EEEEEETTC
T ss_pred eEEEEeCCC
Confidence 688899876
No 228
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=86.68 E-value=12 Score=40.37 Aligned_cols=96 Identities=8% Similarity=-0.049 Sum_probs=53.2
Q ss_pred EEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcc
Q 007468 103 LYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSG 182 (602)
Q Consensus 103 v~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~ 182 (602)
+.+||+.+.....+.... . ...+ ..-+++.+++++..... ...+|++|+.+..+..+... + . .
T Consensus 134 ~~l~d~~~g~~~~l~~~~--~--~~~~-~spDG~~la~~~~~~~~-------~~~i~~~d~~~g~~~~l~~~--~-~--~ 196 (582)
T 3o4h_A 134 VALYALDGGGLRELARLP--G--FGFV-SDIRGDLIAGLGFFGGG-------RVSLFTSNLSSGGLRVFDSG--E-G--S 196 (582)
T ss_dssp EEEEEEETTEEEEEEEES--S--CEEE-EEEETTEEEEEEEEETT-------EEEEEEEETTTCCCEEECCS--S-C--E
T ss_pred ceEEEccCCcEEEeecCC--C--ceEE-ECCCCCEEEEEEEcCCC-------CeEEEEEcCCCCCceEeecC--C-C--c
Confidence 447788888877775422 2 2222 22245544554433221 24599999999988876431 1 1 1
Q ss_pred cEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceE
Q 007468 183 HRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (602)
Q Consensus 183 h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~ 222 (602)
.....+ +++.++.+...+ ...++++|+.+....
T Consensus 197 ~~~~~~SpDG~~l~~~~~~~-------~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 197 FSSASISPGMKVTAGLETAR-------EARLVTVDPRDGSVE 231 (582)
T ss_dssp EEEEEECTTSCEEEEEECSS-------CEEEEEECTTTCCEE
T ss_pred cccceECCCCCEEEEccCCC-------eeEEEEEcCCCCcEE
Confidence 122333 454444333211 247999999998877
No 229
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=86.55 E-value=27 Score=38.36 Aligned_cols=125 Identities=12% Similarity=0.147 Sum_probs=68.2
Q ss_pred EEEEECCEEEEEeCccCCCCCCcceecCeEEEEEC-CCC--cEEEcccCCC---CCCCc---ccEEEE--ECCE----EE
Q 007468 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDL-KTN--QWEQLNLKGC---PSPRS---GHRMVL--YKHK----II 193 (602)
Q Consensus 129 s~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~-~t~--~W~~~~~~~~---p~~R~---~h~~~~--~~~~----Ly 193 (602)
+-++.++.||+.+.. ...++.||. .+. .|+.-..... +..++ ..+.++ .+++ ||
T Consensus 57 tP~v~~g~vyv~~~~-----------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~ 125 (599)
T 1w6s_A 57 APLVVDGKMYIHTSF-----------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALIL 125 (599)
T ss_dssp CCEEETTEEEEECST-----------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEE
T ss_pred ccEEECCEEEEEeCC-----------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEE
Confidence 345669999998752 145888998 776 4877543110 10111 123344 4666 77
Q ss_pred EEcCccCCCCCeeeeceEEEEECCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCcee
Q 007468 194 VFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIH 271 (602)
Q Consensus 194 v~GG~~~~~~~~~~~~~v~~yd~~t~~--W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~ 271 (602)
+... -..|+++|..+.+ |+.-..... +......+-++.++.|||-.+.... ...
T Consensus 126 v~t~----------dg~l~AlDa~TG~~~W~~~~~~~~---~~~~~~ssP~v~~g~V~vg~~g~e~-----------g~~ 181 (599)
T 1w6s_A 126 KTQL----------DGNVAALNAETGETVWKVENSDIK---VGSTLTIAPYVVKDKVIIGSSGAEL-----------GVR 181 (599)
T ss_dssp EECT----------TSEEEEEETTTCCEEEEEECCCGG---GTCBCCSCCEEETTEEEECCBCGGG-----------TCC
T ss_pred EEcC----------CCEEEEEECCCCCEEEeecCCCCC---ccceeecCCEEECCEEEEEeccccc-----------CCC
Confidence 7532 2469999998865 876432200 0001112224568888764431110 123
Q ss_pred eeEEEEeCCCC--eeEEee
Q 007468 272 SDLWSLDPRTW--EWSKVK 288 (602)
Q Consensus 272 ~dv~~yd~~t~--~W~~l~ 288 (602)
..|+.||+.+. .|+.-.
T Consensus 182 g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 182 GYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp CEEEEEETTTCCEEEEEES
T ss_pred CeEEEEECCCCcEEEEEcC
Confidence 45899998765 587653
No 230
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=86.42 E-value=15 Score=40.74 Aligned_cols=108 Identities=14% Similarity=-0.007 Sum_probs=54.7
Q ss_pred cEEEEEcCC-CcEEEecCCCCCCCce-eeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCC
Q 007468 102 DLYRYDVEK-QEWKVISSPNSPPPRS-AHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (602)
Q Consensus 102 dv~~yd~~~-~~W~~l~~~~~P~~R~-~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~ 179 (602)
.|+++|+.+ .+-..+.... +.... ...+..-+..|++... .... ....++++|+.+.+...+.......-
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~pDg~~l~~~~~-~~~~------~~~~i~~~d~~~g~~~~~~~~~~~~~ 335 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGK-EQDIYLARVNWRDPQHLSFQRQ-SRDQ------KKLDLVEVTLASNQQRVLAHETSPTW 335 (741)
T ss_dssp EEEEECSSTTCCCEEECCCS-CSSEEEEEEEEEETTEEEEEEE-ETTS------SEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred EEEEEECCCCCceEEecCCC-CcceEEEEEEeCCCCEEEEEEe-cccC------CeEEEEEEECCCCceEEEEEcCCCCc
Confidence 788899888 7766554321 11111 1222222344554433 1111 23679999999988766543111100
Q ss_pred --CcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEec
Q 007468 180 --RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (602)
Q Consensus 180 --R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~ 225 (602)
.....+..-++++++.++.++ ...+|.+++... +..+.
T Consensus 336 ~~~~~~~~~spdg~~~~~~~~~g-------~~~l~~~~~~~~-~~~l~ 375 (741)
T 2ecf_A 336 VPLHNSLRFLDDGSILWSSERTG-------FQHLYRIDSKGK-AAALT 375 (741)
T ss_dssp CCCCSCCEECTTSCEEEEECTTS-------SCEEEEECSSSC-EEESC
T ss_pred CCcCCceEECCCCeEEEEecCCC-------ccEEEEEcCCCC-eeeee
Confidence 111122222566666655432 357888887665 54443
No 231
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=86.40 E-value=15 Score=37.79 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=13.3
Q ss_pred cceeEEEe-CCEEEEEcCcc
Q 007468 237 SGFQFFVY-QDEVFLYGGYS 255 (602)
Q Consensus 237 ~~~~~~~~-~~~Iyv~GG~~ 255 (602)
..|++++. ++.||.+|-..
T Consensus 274 ~~hs~alt~~G~v~~wG~n~ 293 (389)
T 3kci_A 274 SQFSVALTKSGAVYTWGKGD 293 (389)
T ss_dssp TTEEEEEETTSCEEEEECCG
T ss_pred CCEEEEEeCCCeEEEEeCCC
Confidence 34566555 88999999644
No 232
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=86.27 E-value=9.9 Score=37.99 Aligned_cols=113 Identities=11% Similarity=0.138 Sum_probs=59.7
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~ 178 (602)
..||.+++.+..+..+... .+........+ ++..+++....... ....++++|+.+.+...+.. .+.
T Consensus 216 ~~l~~~d~~~~~~~~l~~~---~~~~~~~~~~~spdg~~l~~~~~~~~~------~~~~l~~~d~~~g~~~~l~~--~~~ 284 (396)
T 3c5m_A 216 ARMWLVNEDGSNVRKIKEH---AEGESCTHEFWIPDGSAMAYVSYFKGQ------TDRVIYKANPETLENEEVMV--MPP 284 (396)
T ss_dssp CCCEEEETTSCCCEESSCC---CTTEEEEEEEECTTSSCEEEEEEETTT------CCEEEEEECTTTCCEEEEEE--CCS
T ss_pred ceEEEEECCCCceeEeecc---CCCccccceEECCCCCEEEEEecCCCC------ccceEEEEECCCCCeEEeee--CCC
Confidence 5799999988888777541 11222222233 34433333222110 11349999999888776654 221
Q ss_pred CCcccEEEEE-CCEEEEEcCccCC---C----CCeeeeceEEEEECCCCceEEeccC
Q 007468 179 PRSGHRMVLY-KHKIIVFGGFYDT---L----REVRYYNDLYVFDLDQFKWQEIKPR 227 (602)
Q Consensus 179 ~R~~h~~~~~-~~~Lyv~GG~~~~---~----~~~~~~~~v~~yd~~t~~W~~v~~~ 227 (602)
.. .+..- +++++++.+.... . ........++.+|+.+.....+...
T Consensus 285 --~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 338 (396)
T 3c5m_A 285 --CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKH 338 (396)
T ss_dssp --EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEEC
T ss_pred --CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCC
Confidence 11 22222 6666666542200 0 0000136799999998877766544
No 233
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=85.49 E-value=42 Score=35.86 Aligned_cols=138 Identities=9% Similarity=0.018 Sum_probs=71.7
Q ss_pred CeEEEEEC--CCCcEEEcccCCCCCCCcccEEEEEC-CEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCC
Q 007468 156 KDFWMLDL--KTNQWEQLNLKGCPSPRSGHRMVLYK-HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (602)
Q Consensus 156 ~dv~~yd~--~t~~W~~~~~~~~p~~R~~h~~~~~~-~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~ 232 (602)
..+|.+++ ....- .+.. .+..+ ..+...+ +.++++.+.. +.+.+||+.+..-..+...
T Consensus 90 ~~l~~~~~~~~g~~~-~l~~--~~~~~--~~~~s~dg~~~~~~s~~~---------~~~~l~d~~~g~~~~l~~~----- 150 (582)
T 3o4h_A 90 HALFKVNTSRPGEEQ-RLEA--VKPMR--ILSGVDTGEAVVFTGATE---------DRVALYALDGGGLRELARL----- 150 (582)
T ss_dssp EEEEEEETTSTTCCE-ECTT--SCSBE--EEEEEECSSCEEEEEECS---------SCEEEEEEETTEEEEEEEE-----
T ss_pred eEEEEEeccCCCccc-cccC--CCCce--eeeeCCCCCeEEEEecCC---------CCceEEEccCCcEEEeecC-----
Confidence 46788887 44332 3322 12111 2233333 4555554432 2233678888877776654
Q ss_pred CCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEE
Q 007468 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (602)
Q Consensus 233 P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv 311 (602)
+. .... ..-+++.+++++.... -...+|++|+.+..++.+... .....+.+.. +++.++
T Consensus 151 ~~--~~~~-~spDG~~la~~~~~~~------------~~~~i~~~d~~~g~~~~l~~~-----~~~~~~~~~SpDG~~l~ 210 (582)
T 3o4h_A 151 PG--FGFV-SDIRGDLIAGLGFFGG------------GRVSLFTSNLSSGGLRVFDSG-----EGSFSSASISPGMKVTA 210 (582)
T ss_dssp SS--CEEE-EEEETTEEEEEEEEET------------TEEEEEEEETTTCCCEEECCS-----SCEEEEEEECTTSCEEE
T ss_pred CC--ceEE-ECCCCCEEEEEEEcCC------------CCeEEEEEcCCCCCceEeecC-----CCccccceECCCCCEEE
Confidence 22 2111 2225555555554322 123499999999988877432 1122333333 555444
Q ss_pred eccccccccccccccccccCeeEEEECCCCceE
Q 007468 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (602)
Q Consensus 312 ~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~ 344 (602)
.+...+ ...|+++|+.+....
T Consensus 211 ~~~~~~------------~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 211 GLETAR------------EARLVTVDPRDGSVE 231 (582)
T ss_dssp EEECSS------------CEEEEEECTTTCCEE
T ss_pred EccCCC------------eeEEEEEcCCCCcEE
Confidence 322211 246999999988877
No 234
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=85.44 E-value=29 Score=33.96 Aligned_cols=216 Identities=8% Similarity=-0.073 Sum_probs=105.4
Q ss_pred eEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCC-CCceeeEEEEE--CCEEEEEeCccCCCC
Q 007468 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSP-PPRSAHQAVSW--KNYLYIFGGEFTSPN 148 (602)
Q Consensus 72 ~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P-~~R~~hs~~~~--~~~iyV~GG~~~~~~ 148 (602)
+.+++.+. ++.|||.-.. +.+++||+.+...+.+...... .......+++. ++.|||.-.......
T Consensus 83 ~gi~~~~~-~g~l~v~d~~----------~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~ 151 (322)
T 2fp8_A 83 YDISYNLQ-NNQLYIVDCY----------YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDD 151 (322)
T ss_dssp EEEEEETT-TTEEEEEETT----------TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCT
T ss_pred ceEEEcCC-CCcEEEEECC----------CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccc
Confidence 34444421 4678886321 2478899887766555321100 11122333333 467888642210000
Q ss_pred CC------cceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE-C-CEEEEEcCccCCCCCeeeeceEEEEECCCC-
Q 007468 149 QE------RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVFDLDQF- 219 (602)
Q Consensus 149 ~~------~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~-~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~- 219 (602)
.. .......+++||+.+.+...+... + ..-...++. + +.|||.-.. .+.|++|++...
T Consensus 152 ~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~---~~p~gia~~~dg~~lyv~d~~---------~~~I~~~~~~~~~ 218 (322)
T 2fp8_A 152 RGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-L---HVPGGAEVSADSSFVLVAEFL---------SHQIVKYWLEGPK 218 (322)
T ss_dssp TCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-E---SCCCEEEECTTSSEEEEEEGG---------GTEEEEEESSSTT
T ss_pred cccceehcccCCCceEEEEeCCCCEEEEeccC-C---ccCcceEECCCCCEEEEEeCC---------CCeEEEEECCCCc
Confidence 00 000125699999988876654321 1 112233443 3 358876321 367899998752
Q ss_pred --ceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCC
Q 007468 220 --KWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGP 296 (602)
Q Consensus 220 --~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~ 296 (602)
.+..+... +.| ..+++. ++.|||......... ........+++||+....-..+......+ .
T Consensus 219 ~~~~~~~~~~-----~gP---~gi~~d~~G~l~va~~~~~~~~------~~~~~~~~v~~~d~~G~~~~~~~~~~g~~-~ 283 (322)
T 2fp8_A 219 KGTAEVLVKI-----PNP---GNIKRNADGHFWVSSSEELDGN------MHGRVDPKGIKFDEFGNILEVIPLPPPFA-G 283 (322)
T ss_dssp TTCEEEEEEC-----SSE---EEEEECTTSCEEEEEEEETTSS------TTSCEEEEEEEECTTSCEEEEEECCTTTT-T
T ss_pred CCccceEEeC-----CCC---CCeEECCCCCEEEEecCccccc------ccCCCccEEEEECCCCCEEEEEECCCCCc-c
Confidence 34443322 212 223333 667888754321100 00012456899998765555554311001 1
Q ss_pred CceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCC
Q 007468 297 RAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (602)
Q Consensus 297 R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t 340 (602)
....+++..+++|||..-. .+.|.+|++..
T Consensus 284 ~~~~~~~~~~g~L~v~~~~--------------~~~i~~~~~~~ 313 (322)
T 2fp8_A 284 EHFEQIQEHDGLLYIGTLF--------------HGSVGILVYDK 313 (322)
T ss_dssp SCCCEEEEETTEEEEECSS--------------CSEEEEEEC--
T ss_pred ccceEEEEeCCEEEEeecC--------------CCceEEEeccc
Confidence 2233445568889886533 24588888754
No 235
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=84.46 E-value=25 Score=35.69 Aligned_cols=30 Identities=20% Similarity=0.391 Sum_probs=18.3
Q ss_pred eEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCc
Q 007468 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE 112 (602)
Q Consensus 72 ~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~ 112 (602)
.++.+.| ++.+++.|+. -..|.+||..+..
T Consensus 32 ~~v~~s~--~g~~la~g~~---------dg~v~iw~~~~~~ 61 (447)
T 3dw8_B 32 STVEFNH--SGELLATGDK---------GGRVVIFQQEQEN 61 (447)
T ss_dssp EEEEECS--SSSEEEEEET---------TSEEEEEEECC--
T ss_pred EEEEECC--CCCEEEEEcC---------CCeEEEEEecCCC
Confidence 3444555 6778888873 2467888877654
No 236
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=84.39 E-value=22 Score=33.56 Aligned_cols=102 Identities=13% Similarity=0.345 Sum_probs=54.0
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCc-EE--EecCC--CCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcce
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE-WK--VISSP--NSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFH 153 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~-W~--~l~~~--~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~ 153 (602)
.+++|+|=|. .+|+++..... .. .+... .+| ..--++... ++++|+|-|
T Consensus 40 ~g~~~fFkg~-----------~~Wr~~~~~~~~~~P~~I~~~wp~lp--~~IDAA~~~~~~~k~yfFkG----------- 95 (218)
T 1gen_A 40 RGEIFFFKDR-----------FIWRTVTPRDKPMGPLLVATFWPELP--EKIDAVYEAPQEEKAVFFAG----------- 95 (218)
T ss_dssp TTEEEEEETT-----------EEEEESSTTSCCEEEEEGGGTCTTSC--SCCSEEEEETTTTEEEEEET-----------
T ss_pred CCcEEEEECC-----------EEEEEeCCCCccCCCEEHHHhcCCCC--CCccEEEEECCCCEEEEEeC-----------
Confidence 6889999873 45666544321 11 22211 122 222233333 589999977
Q ss_pred ecCeEEEEECCCCc--E-EEcccCCCCCC-CcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCC
Q 007468 154 HYKDFWMLDLKTNQ--W-EQLNLKGCPSP-RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (602)
Q Consensus 154 ~~~dv~~yd~~t~~--W-~~~~~~~~p~~-R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~ 219 (602)
+.+|+|+..+.. + ..+...+.|.. ..-.++..+ ++++|+|-| +..|+||..+.
T Consensus 96 --~~yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG-----------~~ywr~d~~~~ 154 (218)
T 1gen_A 96 --NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG-----------DKFWRYNEVKK 154 (218)
T ss_dssp --TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET-----------TEEEEEETTTT
T ss_pred --CEEEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC-----------CEEEEEECccc
Confidence 457899853110 0 11211133332 122344443 689999977 46899998765
No 237
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=84.32 E-value=0.38 Score=49.59 Aligned_cols=93 Identities=13% Similarity=0.044 Sum_probs=37.2
Q ss_pred CcEEEEEcCCC--cEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCC--cEEEcccCCC
Q 007468 101 GDLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKGC 176 (602)
Q Consensus 101 ~dv~~yd~~~~--~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~~~~~~~~ 176 (602)
..|+++|..++ .|+.-. .. . . .+.++.++.+|+.++.. ..++.||..+. .|..-.. .
T Consensus 19 g~v~a~d~~tG~~~W~~~~-~~--~-~--s~p~~~~g~~~v~~s~d-----------g~l~a~d~~tG~~~w~~~~~--~ 79 (369)
T 2hz6_A 19 GSLHAVSKRTGSIKWTLKE-DP--V-L--QVPTHVEEPAFLPDPND-----------GSLYTLGSKNNEGLTKLPFT--I 79 (369)
T ss_dssp SEEEEEETTTCCEEEEEEC-CC--S-C--CCC-----CCEEECTTT-----------CCEEEC-----CCSEECSCC--H
T ss_pred CEEEEEECCCCCEEEEecC-CC--c-e--ecceEcCCCEEEEeCCC-----------CEEEEEECCCCceeeeeecc--C
Confidence 36899998877 477543 11 1 1 12233456677776432 35888898665 4653211 0
Q ss_pred CCCCcccEEEE-ECCEEEEEcCccCCCCCeeeeceEEEEECCCCc--eEE
Q 007468 177 PSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQE 223 (602)
Q Consensus 177 p~~R~~h~~~~-~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~--W~~ 223 (602)
+... ..+.++ .++.|| +|+. -..+++||+.+.+ |+.
T Consensus 80 ~~~~-~~sp~~~~~~~v~-~g~~---------dg~v~a~D~~tG~~~w~~ 118 (369)
T 2hz6_A 80 PELV-QASPCRSSDGILY-MGKK---------QDIWYVIDLLTGEKQQTL 118 (369)
T ss_dssp HHHH-TTCSCC-----CC-CCEE---------EEEEEEECCC--------
T ss_pred cccc-ccCceEecCCEEE-EEeC---------CCEEEEEECCCCcEEEEe
Confidence 1000 011111 344454 3332 2468999988754 754
No 238
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=83.46 E-value=8.4 Score=35.80 Aligned_cols=104 Identities=12% Similarity=0.243 Sum_probs=60.1
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcE-EEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCe
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW-KVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKD 157 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W-~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~d 157 (602)
++++|+|-| +.+|+|+..+..- +.+....+|......-|++. ++++|+|-| +.
T Consensus 64 ~~~~yfFkG-----------~~yw~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg-------------~~ 119 (195)
T 1itv_A 64 SKKLFFFSG-----------RQVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG-------------RR 119 (195)
T ss_dssp TCCEEEEET-----------TEEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET-------------TE
T ss_pred CCeEEEEeC-----------CEEEEEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeC-------------CE
Confidence 578999988 3667887542111 11222223332112223332 589999977 35
Q ss_pred EEEEECCCCcEEE-----ccc--CCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCce
Q 007468 158 FWMLDLKTNQWEQ-----LNL--KGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (602)
Q Consensus 158 v~~yd~~t~~W~~-----~~~--~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W 221 (602)
.|+||..+++-.. +.. .++| ..-.++..+++.+|+|-| +..|+||..+..-
T Consensus 120 ywr~d~~~~~~~~gyPr~i~~~w~Gvp--~~idaa~~~~g~~Yffkg-----------~~y~~~~~~~~~v 177 (195)
T 1itv_A 120 LWRFDVKAQMVDPRSASEVDRMFPGVP--LDTHDVFQFREKAYFCQD-----------RFYWRVSSRSELN 177 (195)
T ss_dssp EEEEETTTTEECGGGCEEHHHHSTTSC--SSCSEEEEETTEEEEEET-----------TEEEEEECCTTCC
T ss_pred EEEEeCCcccccCCCccChhhcCCCCC--CCCCEEEEeCCeEEEEeC-----------CEEEEEECCccEE
Confidence 7999998764321 110 1222 334566667899999977 4688888876643
No 239
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=82.66 E-value=34 Score=32.55 Aligned_cols=126 Identities=10% Similarity=0.094 Sum_probs=62.8
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~ 178 (602)
+.|+++|+.+++...+-... .....-.++.+ ++.+++.|+.+ ..+.+||+.+.+-..... ...
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~--~~~~~V~~v~~~~~~~~l~sgs~D-----------g~v~iw~~~~~~~~~~~~--~h~ 109 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQME--QPGEYISSVAWIKEGNYLAVGTSS-----------AEVQLWDVQQQKRLRNMT--SHS 109 (318)
T ss_dssp TEEEEEETTTCCEEEEEECC--STTCCEEEEEECTTSSEEEEEETT-----------SEEEEEETTTTEEEEEEE--CCS
T ss_pred CEEEEEECCCCCEEEEEEec--CCCCeEEEEEECCCCCEEEEEECC-----------CcEEEeecCCceeEEEec--Ccc
Confidence 46899999998776543221 11111223333 56677777753 357788998876433222 122
Q ss_pred CCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEE-eCCEEEEEcCccCC
Q 007468 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFV-YQDEVFLYGGYSKE 257 (602)
Q Consensus 179 ~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~-~~~~Iyv~GG~~~~ 257 (602)
. ...+....+.+++.|+.. ..+..++..+......... ........+.. ..+.+++.|+.++.
T Consensus 110 ~--~~~~~~~~~~~l~s~~~~---------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~s~~~d~~ 173 (318)
T 4ggc_A 110 A--RVGSLSWNSYILSSGSRS---------GHIHHHDVRVAEHHVATLS-----GHSQEVCGLRWAPDGRHLASGGNDNL 173 (318)
T ss_dssp S--CEEEEEEETTEEEEEETT---------SEEEEEETTSSSCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred c--eEEEeecCCCEEEEEecC---------CceEeeecCCCceeEEEEc-----CccCceEEEEEcCCCCEEEEEecCcc
Confidence 2 223344455666666543 2345555554433322221 11111112222 26666777777655
No 240
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=82.54 E-value=39 Score=33.21 Aligned_cols=96 Identities=11% Similarity=0.039 Sum_probs=49.0
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCC
Q 007468 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (602)
Q Consensus 102 dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~ 179 (602)
.|++||+.+.++..+.......+........+ ++.+|+.. ...... .....+|+|+ +.+...+... . .
T Consensus 110 gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~-~~~~~~----~~~~~l~~~~--~g~~~~~~~~-~--~ 179 (326)
T 2ghs_A 110 GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGT-MGRKAE----TGAGSIYHVA--KGKVTKLFAD-I--S 179 (326)
T ss_dssp EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEE-EETTCC----TTCEEEEEEE--TTEEEEEEEE-E--S
T ss_pred CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEe-CCCcCC----CCceEEEEEe--CCcEEEeeCC-C--c
Confidence 48999999998887654211111122222233 56777643 211100 1235789999 5666554321 0 1
Q ss_pred CcccEEEEE-C-CEEEEEcCccCCCCCeeeeceEEEEECC
Q 007468 180 RSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (602)
Q Consensus 180 R~~h~~~~~-~-~~Lyv~GG~~~~~~~~~~~~~v~~yd~~ 217 (602)
...+.+.. + +.||+.... .+.|++|++.
T Consensus 180 -~~~~i~~s~dg~~lyv~~~~---------~~~I~~~d~~ 209 (326)
T 2ghs_A 180 -IPNSICFSPDGTTGYFVDTK---------VNRLMRVPLD 209 (326)
T ss_dssp -SEEEEEECTTSCEEEEEETT---------TCEEEEEEBC
T ss_pred -ccCCeEEcCCCCEEEEEECC---------CCEEEEEEcc
Confidence 11223332 3 367776432 2578999875
No 241
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=82.20 E-value=39 Score=32.91 Aligned_cols=144 Identities=14% Similarity=0.027 Sum_probs=70.9
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv 158 (602)
++.+++.|+. -..|.+||+.+++-...-... . ..-.++.+ ++.+++.|+.+ ..+
T Consensus 76 dg~~l~s~s~---------D~~v~~wd~~~~~~~~~~~~h--~--~~v~~~~~~~~~~~l~s~s~D-----------~~i 131 (319)
T 3frx_A 76 DGAYALSASW---------DKTLRLWDVATGETYQRFVGH--K--SDVMSVDIDKKASMIISGSRD-----------KTI 131 (319)
T ss_dssp TSSEEEEEET---------TSEEEEEETTTTEEEEEEECC--S--SCEEEEEECTTSCEEEEEETT-----------SCE
T ss_pred CCCEEEEEeC---------CCEEEEEECCCCCeeEEEccC--C--CcEEEEEEcCCCCEEEEEeCC-----------CeE
Confidence 5666666662 246888998887643221111 1 11122223 45667777653 246
Q ss_pred EEEECCCCcEEEcccCCCCCCCcccEEEEE-------CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCC
Q 007468 159 WMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-------KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM 231 (602)
Q Consensus 159 ~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-------~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~ 231 (602)
.+||+....-..+.. .... -.++... ++.+++.||.+ ..+..||+.+..-...-..
T Consensus 132 ~vwd~~~~~~~~~~~---h~~~-v~~~~~~~~~~~~~~~~~l~s~~~d---------~~i~~wd~~~~~~~~~~~~---- 194 (319)
T 3frx_A 132 KVWTIKGQCLATLLG---HNDW-VSQVRVVPNEKADDDSVTIISAGND---------KMVKAWNLNQFQIEADFIG---- 194 (319)
T ss_dssp EEEETTSCEEEEECC---CSSC-EEEEEECCC------CCEEEEEETT---------SCEEEEETTTTEEEEEECC----
T ss_pred EEEECCCCeEEEEec---cCCc-EEEEEEccCCCCCCCccEEEEEeCC---------CEEEEEECCcchhheeecC----
Confidence 677876554333221 1111 1111111 22355566643 3578888876543221111
Q ss_pred CCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCe
Q 007468 232 WPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (602)
Q Consensus 232 ~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (602)
....-.+++.. ++.+++.||.++. +.+||+.+.+
T Consensus 195 --h~~~v~~~~~sp~g~~l~s~~~dg~----------------i~iwd~~~~~ 229 (319)
T 3frx_A 195 --HNSNINTLTASPDGTLIASAGKDGE----------------IMLWNLAAKK 229 (319)
T ss_dssp --CCSCEEEEEECTTSSEEEEEETTCE----------------EEEEETTTTE
T ss_pred --CCCcEEEEEEcCCCCEEEEEeCCCe----------------EEEEECCCCc
Confidence 11111122222 6777888887665 7788887654
No 242
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=82.14 E-value=32 Score=34.88 Aligned_cols=153 Identities=14% Similarity=0.065 Sum_probs=78.3
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv 158 (602)
++.+++.|+. -..|.+||+.+.+-...-.. +.......++.+ ++.+++.|+.. ..+
T Consensus 181 ~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~~~d-----------g~i 238 (437)
T 3gre_A 181 EKSLLVALTN---------LSRVIIFDIRTLERLQIIEN--SPRHGAVSSICIDEECCVLILGTTR-----------GII 238 (437)
T ss_dssp SCEEEEEEET---------TSEEEEEETTTCCEEEEEEC--CGGGCCEEEEEECTTSCEEEEEETT-----------SCE
T ss_pred CCCEEEEEeC---------CCeEEEEeCCCCeeeEEEcc--CCCCCceEEEEECCCCCEEEEEcCC-----------CeE
Confidence 4667777762 24788999988765432211 111122233333 46677777653 348
Q ss_pred EEEECCCCcEEEcccCCCCCCCcccEEEEE------CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCC
Q 007468 159 WMLDLKTNQWEQLNLKGCPSPRSGHRMVLY------KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (602)
Q Consensus 159 ~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~------~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~ 232 (602)
.+||+.+.+....-. .+ ....-.++.+ ++.+++.|+.+ ..|.+||+.+..-...-......+
T Consensus 239 ~iwd~~~~~~~~~~~--~~-~~~~v~~~~~~~~~s~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~ 306 (437)
T 3gre_A 239 DIWDIRFNVLIRSWS--FG-DHAPITHVEVCQFYGKNSVIVVGGSSK---------TFLTIWNFVKGHCQYAFINSDEQP 306 (437)
T ss_dssp EEEETTTTEEEEEEB--CT-TCEEEEEEEECTTTCTTEEEEEEESTT---------EEEEEEETTTTEEEEEEESSSSCC
T ss_pred EEEEcCCccEEEEEe--cC-CCCceEEEEeccccCCCccEEEEEcCC---------CcEEEEEcCCCcEEEEEEcCCCCC
Confidence 889998866533211 01 1111112211 24456666542 368888887665322211100000
Q ss_pred ------C--------------CCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCe
Q 007468 233 ------P--------------SPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (602)
Q Consensus 233 ------P--------------~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (602)
| ....-.+++..++.+++.||.++. +.+||+.+..
T Consensus 307 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~----------------i~~wd~~~~~ 361 (437)
T 3gre_A 307 SMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSS----------------IVMFSLNELS 361 (437)
T ss_dssp CGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTE----------------EEEEETTCGG
T ss_pred ccceecccccccccceecccccCCceEEEEECCceEEEecCCCCe----------------EEEEECCCcc
Confidence 0 111122334447788888888766 8888877654
No 243
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=81.72 E-value=42 Score=32.97 Aligned_cols=63 Identities=8% Similarity=-0.024 Sum_probs=31.9
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~ 159 (602)
++.+++.|+. -..+.+||+.+.+....-... ...-.+++.. ++..++.||.. ..+.
T Consensus 87 ~~~~l~s~s~---------D~~v~lwd~~~~~~~~~~~~h---~~~v~~v~~sp~~~~l~s~~~d-----------~~i~ 143 (343)
T 2xzm_R 87 ENCFAISSSW---------DKTLRLWDLRTGTTYKRFVGH---QSEVYSVAFSPDNRQILSAGAE-----------REIK 143 (343)
T ss_dssp STTEEEEEET---------TSEEEEEETTSSCEEEEEECC---CSCEEEEEECSSTTEEEEEETT-----------SCEE
T ss_pred CCCEEEEEcC---------CCcEEEEECCCCcEEEEEcCC---CCcEEEEEECCCCCEEEEEcCC-----------CEEE
Confidence 4556666662 246788998877543221111 1111222222 45556666643 3466
Q ss_pred EEECCCC
Q 007468 160 MLDLKTN 166 (602)
Q Consensus 160 ~yd~~t~ 166 (602)
+||+...
T Consensus 144 ~wd~~~~ 150 (343)
T 2xzm_R 144 LWNILGE 150 (343)
T ss_dssp EEESSSC
T ss_pred EEeccCC
Confidence 7777644
No 244
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=81.29 E-value=43 Score=32.86 Aligned_cols=61 Identities=15% Similarity=0.138 Sum_probs=31.8
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceE
Q 007468 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (602)
Q Consensus 134 ~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v 211 (602)
++.+++.|+.+ ..+.+||+.+.+....-. .... .-.++.+ ++..++.||.+ ..+
T Consensus 87 ~~~~l~s~s~D-----------~~v~lwd~~~~~~~~~~~--~h~~--~v~~v~~sp~~~~l~s~~~d---------~~i 142 (343)
T 2xzm_R 87 ENCFAISSSWD-----------KTLRLWDLRTGTTYKRFV--GHQS--EVYSVAFSPDNRQILSAGAE---------REI 142 (343)
T ss_dssp STTEEEEEETT-----------SEEEEEETTSSCEEEEEE--CCCS--CEEEEEECSSTTEEEEEETT---------SCE
T ss_pred CCCEEEEEcCC-----------CcEEEEECCCCcEEEEEc--CCCC--cEEEEEECCCCCEEEEEcCC---------CEE
Confidence 35566666643 357888988775432211 0111 1122333 45666677653 357
Q ss_pred EEEECCC
Q 007468 212 YVFDLDQ 218 (602)
Q Consensus 212 ~~yd~~t 218 (602)
.+||+..
T Consensus 143 ~~wd~~~ 149 (343)
T 2xzm_R 143 KLWNILG 149 (343)
T ss_dssp EEEESSS
T ss_pred EEEeccC
Confidence 7777764
No 245
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=81.15 E-value=33 Score=31.67 Aligned_cols=142 Identities=17% Similarity=0.317 Sum_probs=73.1
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCC---CcEEEecC--CCCCCCceeeEEEE--ECCEEEEEeCccCCCCCCcce
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEK---QEWKVISS--PNSPPPRSAHQAVS--WKNYLYIFGGEFTSPNQERFH 153 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~---~~W~~l~~--~~~P~~R~~hs~~~--~~~~iyV~GG~~~~~~~~~~~ 153 (602)
++++|+|-|. .+|+|+... +-=..+.. +.+|. ..-|++ .++++|+|-|
T Consensus 15 ~g~~~fFkg~-----------~~w~~~~~~~~~gyP~~I~~~w~glP~---~iDAa~~~~~g~~yfFkg----------- 69 (196)
T 3c7x_A 15 RGEMFVFKER-----------WFWRVRNNQVMDGYPMPIGQFWRGLPA---SINTAYERKDGKFVFFKG----------- 69 (196)
T ss_dssp TTEEEEEETT-----------EEEEEETTEECTTCSEEHHHHSTTCCS---SCCEEEECTTSCEEEEET-----------
T ss_pred CCEEEEEECC-----------EEEEEECCccCCCCceEhhHhccCCCC---CccEEEEeCCCcEEEecC-----------
Confidence 6899999883 567775331 00011211 12333 222222 3678999977
Q ss_pred ecCeEEEEECCCCcE---EEcccC--CCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceE----
Q 007468 154 HYKDFWMLDLKTNQW---EQLNLK--GCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ---- 222 (602)
Q Consensus 154 ~~~dv~~yd~~t~~W---~~~~~~--~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~---- 222 (602)
+.+|+|+..+... ..+... ++|.... -++..+ ++++|+|-| +..|+||..+.+-.
T Consensus 70 --~~yw~~~~~~~~~gyPk~I~~~~~glP~~~I-DAA~~~~~~g~~yfFkG-----------~~yw~yd~~~~~v~~gyP 135 (196)
T 3c7x_A 70 --DKHWVFDEASLEPGYPKHIKELGRGLPTDKI-DAALFWMPNGKTYFFRG-----------NKYYRFNEELRAVDSEYP 135 (196)
T ss_dssp --TEEEEEETTEECTTCSEEGGGTCBSCCSSCC-SEEEEETTTTEEEEEET-----------TEEEEEETTTTEECTTCS
T ss_pred --CEEEEEeCCcccCCCCeEhhhcCCCCCCCcc-cEEEEEccCCEEEEEEC-----------CEEEEEeCCcccccCCCC
Confidence 3578888542110 122221 1342222 234433 589999977 46799998764311
Q ss_pred -EeccCCCCCCCCCccceeEEEe-CC-EEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCe
Q 007468 223 -EIKPRFGSMWPSPRSGFQFFVY-QD-EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (602)
Q Consensus 223 -~v~~~~~~~~P~~R~~~~~~~~-~~-~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (602)
.+..- .+ +|. .-.++... ++ .+|+|-|. ..|+||..+.+
T Consensus 136 k~i~~~-~g-ip~--~idaAf~~~~~~~~YfFkg~------------------~y~r~d~~~~~ 177 (196)
T 3c7x_A 136 KNIKVW-EG-IPE--SPRGSFMGSDEVFTYFYKGN------------------KYWKFNNQKLK 177 (196)
T ss_dssp EEGGGS-BT-CCS--SCSEEEECTTSSEEEEEETT------------------EEEEEETTTTE
T ss_pred ccHHHC-CC-cCC--CcceeEEecCCCEEEEEECC------------------EEEEEECCcce
Confidence 11111 01 122 11233333 44 89998664 27899987754
No 246
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=80.82 E-value=24 Score=34.21 Aligned_cols=103 Identities=8% Similarity=0.024 Sum_probs=52.2
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCcccEEEEE-C-CEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCC
Q 007468 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP 233 (602)
Q Consensus 156 ~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~-~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P 233 (602)
..+++||+.+.++..+. .... -.+.+.. + ..||+....... ...+.+++|++............ ..+
T Consensus 169 ~~v~~~d~~~g~~~~~~--~~~~---p~gl~~spdg~~lyv~~~~~~~----~~~~~i~~~~~~~~~l~~~~~~~--~~~ 237 (305)
T 3dr2_A 169 HSVYRLPPDGSPLQRMA--DLDH---PNGLAFSPDEQTLYVSQTPEQG----HGSVEITAFAWRDGALHDRRHFA--SVP 237 (305)
T ss_dssp EEEEEECSSSCCCEEEE--EESS---EEEEEECTTSSEEEEEECCC-------CCCEEEEEEEETTEEEEEEEEE--CCS
T ss_pred CeEEEEcCCCCcEEEEe--cCCC---CcceEEcCCCCEEEEEecCCcC----CCCCEEEEEEecCCCccCCeEEE--ECC
Confidence 57999999888877654 1211 1233333 3 358876432110 01257899988765422111110 001
Q ss_pred CCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEee
Q 007468 234 SPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (602)
Q Consensus 234 ~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~ 288 (602)
.. .-.++++. ++.||+..+ ..|++|++.......+.
T Consensus 238 ~~-~pdgi~~d~~G~lwv~~~------------------~gv~~~~~~g~~~~~~~ 274 (305)
T 3dr2_A 238 DG-LPDGFCVDRGGWLWSSSG------------------TGVCVFDSDGQLLGHIP 274 (305)
T ss_dssp SS-CCCSEEECTTSCEEECCS------------------SEEEEECTTSCEEEEEE
T ss_pred CC-CCCeEEECCCCCEEEecC------------------CcEEEECCCCCEEEEEE
Confidence 11 11123333 667887542 12889999766655554
No 247
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=80.58 E-value=46 Score=32.72 Aligned_cols=174 Identities=9% Similarity=0.082 Sum_probs=95.9
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCC----CcEEEcccC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT----NQWEQLNLK 174 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t----~~W~~~~~~ 174 (602)
+.|.++|+.+.....+.. ....-++.++. ++.||+.-.. ...++++++.+ .....+-..
T Consensus 10 ~~I~~i~~~~~~~~~~~~----~~~~p~g~~~d~~~~~ly~~D~~-----------~~~I~~~~~~g~~~~~~~~~~~~~ 74 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIP----NLRNVVALDTEVASNRIYWSDLS-----------QRMICSTQLDRAHGVSSYDTVISR 74 (316)
T ss_dssp SSEEEEETTSCCCEEEEC----SCSSEEEEEEETTTTEEEEEETT-----------TTEEEEEEC--------CEEEECS
T ss_pred CeEEEEECCCcceEehhc----CCCceEEEEEEeCCCEEEEEECC-----------CCcEEEEECCCCCCCcccEEEEeC
Confidence 478889998887766532 23344555554 5789998642 25688999876 222222221
Q ss_pred CCCCCCcccEEEE--ECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEE
Q 007468 175 GCPSPRSGHRMVL--YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFL 250 (602)
Q Consensus 175 ~~p~~R~~h~~~~--~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv 250 (602)
++..| +++++ .++.||+.-.. .+.|.++++....-..+... .+..|+ .+++. ++.||+
T Consensus 75 ~~~~p---~glavd~~~~~ly~~d~~---------~~~I~~~~~~g~~~~~~~~~---~~~~P~---~iavdp~~g~ly~ 136 (316)
T 1ijq_A 75 DIQAP---DGLAVDWIHSNIYWTDSV---------LGTVSVADTKGVKRKTLFRE---NGSKPR---AIVVDPVHGFMYW 136 (316)
T ss_dssp SCSCC---CEEEEETTTTEEEEEETT---------TTEEEEEETTSSSEEEEEEC---TTCCEE---EEEEETTTTEEEE
T ss_pred CCCCc---CEEEEeecCCeEEEEECC---------CCEEEEEeCCCCceEEEEEC---CCCCcc---eEEeCCCCCEEEE
Confidence 12222 34444 37899987432 35788899876543333221 112332 34443 789998
Q ss_pred EcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE--CCeEEEecccccccccccccccc
Q 007468 251 YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSL 328 (602)
Q Consensus 251 ~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~--~~~lyv~GG~~~~~~~~~~~~~~ 328 (602)
..... ...|+++++....-+.+... .-..-.++++- +++||+.-..
T Consensus 137 ~d~~~---------------~~~I~~~~~dG~~~~~~~~~----~~~~P~gla~d~~~~~lY~~D~~------------- 184 (316)
T 1ijq_A 137 TDWGT---------------PAKIKKGGLNGVDIYSLVTE----NIQWPNGITLDLLSGRLYWVDSK------------- 184 (316)
T ss_dssp EECSS---------------SCEEEEEETTSCCEEEEECS----SCSCEEEEEEETTTTEEEEEETT-------------
T ss_pred EccCC---------------CCeEEEEcCCCCCeEEEEEC----CCCCceEEEEeccCCEEEEEECC-------------
Confidence 75321 13488888765443333221 11223355554 6889986432
Q ss_pred ccCeeEEEECCC
Q 007468 329 FLNELYGFQLDN 340 (602)
Q Consensus 329 ~~ndv~~yd~~t 340 (602)
.+.|++||+..
T Consensus 185 -~~~I~~~d~dg 195 (316)
T 1ijq_A 185 -LHSISSIDVNG 195 (316)
T ss_dssp -TTEEEEEETTS
T ss_pred -CCeEEEEecCC
Confidence 35789999864
No 248
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=80.57 E-value=37 Score=32.71 Aligned_cols=126 Identities=13% Similarity=0.261 Sum_probs=62.6
Q ss_pred EEEEEcCCC-cEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECC-CCcEEEcccCCCCCCC
Q 007468 103 LYRYDVEKQ-EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLK-TNQWEQLNLKGCPSPR 180 (602)
Q Consensus 103 v~~yd~~~~-~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~-t~~W~~~~~~~~p~~R 180 (602)
+++||+... .|.... +... ....++.++.|||... ...+++||+. ...|..... .+
T Consensus 80 l~~~d~~g~~~~~~~~----~~~~-~~~~~~~~~~l~v~t~------------~~~l~~~d~~g~~~~~~~~~----~~- 137 (330)
T 3hxj_A 80 VYAINPDGTEKWRFDT----KKAI-VSDFTIFEDILYVTSM------------DGHLYAINTDGTEKWRFKTK----KA- 137 (330)
T ss_dssp EEEECCCGGGGGGSCC----------CCEEEETTEEEEECT------------TSEEEEECTTSCEEEEEECS----SC-
T ss_pred EEEECCCCcEEEEEEC----CCCc-ccCceEECCEEEEEec------------CCEEEEEcCCCCEEEEEcCC----Cc-
Confidence 888887432 343211 1111 1122233788887432 1357888887 335765432 11
Q ss_pred cccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCC-CceEEeccCCCCCCCCCccceeEEE-eCCEEEEEcCccCC
Q 007468 181 SGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQEIKPRFGSMWPSPRSGFQFFV-YQDEVFLYGGYSKE 257 (602)
Q Consensus 181 ~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t-~~W~~v~~~~~~~~P~~R~~~~~~~-~~~~Iyv~GG~~~~ 257 (602)
...+.+.. ++.||+. .. ...+++||+.. ..|...... .. ..+++. .++.||+.. ..
T Consensus 138 ~~~~~~~~~~g~l~vg-t~---------~~~l~~~d~~g~~~~~~~~~~-------~~-~~~~~~d~~g~l~v~t---~~ 196 (330)
T 3hxj_A 138 IYATPIVSEDGTIYVG-SN---------DNYLYAINPDGTEKWRFKTND-------AI-TSAASIGKDGTIYFGS---DK 196 (330)
T ss_dssp CCSCCEECTTSCEEEE-CT---------TSEEEEECTTSCEEEEEECSS-------CC-CSCCEECTTCCEEEES---SS
T ss_pred eeeeeEEcCCCEEEEE-cC---------CCEEEEECCCCCEeEEEecCC-------Cc-eeeeEEcCCCEEEEEe---CE
Confidence 11222344 6677763 21 14688999872 236543221 11 122333 367777755 33
Q ss_pred CCCccCCCCCCceeeeEEEEeCC-CCeeEEe
Q 007468 258 VSTDKNQSEKGIIHSDLWSLDPR-TWEWSKV 287 (602)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~-t~~W~~l 287 (602)
+++||.. ...|...
T Consensus 197 ----------------l~~~d~~g~~~~~~~ 211 (330)
T 3hxj_A 197 ----------------VYAINPDGTEKWNFY 211 (330)
T ss_dssp ----------------EEEECTTSCEEEEEC
T ss_pred ----------------EEEECCCCcEEEEEc
Confidence 7888844 2356654
No 249
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=80.41 E-value=53 Score=33.31 Aligned_cols=74 Identities=8% Similarity=-0.086 Sum_probs=40.4
Q ss_pred CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCe--EEEeccccccccc
Q 007468 245 QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKR--ALLFGGVVDMEMK 321 (602)
Q Consensus 245 ~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~--lyv~GG~~~~~~~ 321 (602)
+++|||....... .......+.|+++|+.+.+-..--+ .+...+++++. +++ +|+..+.
T Consensus 278 ~~~lyV~~~~~~~-------~~~~~~~~~V~VID~~t~~vv~~i~-----~g~~p~~i~~s~Dg~~~l~v~~~~------ 339 (373)
T 2mad_H 278 SDGIYLLTSEQSA-------WKLHAAAKEVTSVTGLVGQTSSQIS-----LGHDVDAISVAQDGGPDLYALSAG------ 339 (373)
T ss_pred CCEEEEEeccCCc-------ccccCCCCeEEEEECCCCEEEEEEE-----CCCCcCeEEECCCCCeEEEEEcCC------
Confidence 6789987542211 0001134679999998876532222 22233455554 344 5543322
Q ss_pred cccccccccCeeEEEECCCCceE
Q 007468 322 GDVIMSLFLNELYGFQLDNHRWY 344 (602)
Q Consensus 322 ~~~~~~~~~ndv~~yd~~t~~W~ 344 (602)
.++|.+||+.+.+=.
T Consensus 340 --------~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 340 --------TEVLHIYDAGAGDQD 354 (373)
T ss_pred --------CCeEEEEECCCCCEE
Confidence 367999999886544
No 250
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=80.06 E-value=53 Score=33.11 Aligned_cols=200 Identities=13% Similarity=0.084 Sum_probs=98.4
Q ss_pred CcEEEEEcCCCcEEEecCCC----CCCCceeeEEEEE----CCEEEEEeC---ccCCCCCCcceecCeEEEEECC---CC
Q 007468 101 GDLYRYDVEKQEWKVISSPN----SPPPRSAHQAVSW----KNYLYIFGG---EFTSPNQERFHHYKDFWMLDLK---TN 166 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~----~P~~R~~hs~~~~----~~~iyV~GG---~~~~~~~~~~~~~~dv~~yd~~---t~ 166 (602)
..|+.|++..+.-..+.... ........++.+. .+.|+|+-- ......+ ...-.+.+.+||+. ++
T Consensus 35 g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~-~~~g~~~v~~~Dl~~~~tg 113 (334)
T 2p9w_A 35 GRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ-SSHGASSFHSFNLPLSENS 113 (334)
T ss_dssp TEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC-CSSSCCEEEEEESSCCTTC
T ss_pred CEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc-ccCCCCEEEEEcCCcCCCC
Confidence 57889999866554442211 1112222344441 468888621 1111110 01124679999988 44
Q ss_pred --cEEEcccCCCCC------C-Ccc-cEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCc---eEEeccCCCCC
Q 007468 167 --QWEQLNLKGCPS------P-RSG-HRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK---WQEIKPRFGSM 231 (602)
Q Consensus 167 --~W~~~~~~~~p~------~-R~~-h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~---W~~v~~~~~~~ 231 (602)
.|..--. .... + +++ .--+++ .+.+||.+-+. +..|+++++.... |-.-.+.
T Consensus 114 ~~~~~~dL~-~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~--------~~~I~rV~pdG~~~~~~~~~~~~---- 180 (334)
T 2p9w_A 114 KPVWSVNFE-KVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALG--------MPAIARVSADGKTVSTFAWESGN---- 180 (334)
T ss_dssp CCSEEEESH-HHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEES--------SCEEEEECTTSCCEEEEEECCCC----
T ss_pred CEEEEecCc-cccccccccccccccCCceeEECCCCCEEEeCCCC--------CCeEEEEeCCCCEEeeeeecCCC----
Confidence 4543211 0000 1 222 222233 67899976542 1569999987542 5322211
Q ss_pred CCCCccceeE-EEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecC--CCC---CCCCceeEEE
Q 007468 232 WPSPRSGFQF-FVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI--GMP---PGPRAGFSMC 303 (602)
Q Consensus 232 ~P~~R~~~~~-~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~--g~~---P~~R~~~s~~ 303 (602)
+..+.+... ++. +..|++..+ .+. +++||+.+.....++.. |.. +.+ .+....
T Consensus 181 -~~~~~G~nGIv~~pdg~~Liv~~~-~g~----------------L~~fD~~~pv~~~v~~~~~G~~~~~~~~-dgilp~ 241 (334)
T 2p9w_A 181 -GGQRPGYSGITFDPHSNKLIAFGG-PRA----------------LTAFDVSKPYAWPEPVKINGDFGTLSGT-EKIVTV 241 (334)
T ss_dssp -SSSCCSCSEEEEETTTTEEEEESS-SSS----------------EEEEECSSSSCCCEECEESSCCCCCTTE-EEEEEE
T ss_pred -cccccCcceEEEeCCCCEEEEEcC-CCe----------------EEEEcCCCCcceeecccccCCcccccCc-cccccc
Confidence 334555544 444 557888777 555 89999875443122221 211 111 111122
Q ss_pred EECCeEEEeccccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 304 VHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 304 ~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
-.+++++++.-. .+.++++--..+ |.....
T Consensus 242 ~~~G~vllV~~~--------------~~~~~~l~S~Dg-W~sa~~ 271 (334)
T 2p9w_A 242 PVGNESVLVGAR--------------APYAISFRSWDN-WKSANI 271 (334)
T ss_dssp EETTEEEEEEEE--------------TTEEEEEECSST-TSEEEE
T ss_pred ccCCEEEEEEcC--------------CCCEEEEECCCC-cceeEE
Confidence 358888666532 123455544455 887776
No 251
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=80.02 E-value=25 Score=35.96 Aligned_cols=109 Identities=14% Similarity=0.268 Sum_probs=59.6
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCc--E-EEcccCCCCCCC-cccEEEEE--CCEEEEEcCccCCCCCeee
Q 007468 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--W-EQLNLKGCPSPR-SGHRMVLY--KHKIIVFGGFYDTLREVRY 207 (602)
Q Consensus 134 ~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~--W-~~~~~~~~p~~R-~~h~~~~~--~~~Lyv~GG~~~~~~~~~~ 207 (602)
++.+|+|-| +.+|+|+..... + ..+...++|..- .--++..+ ++++|+|-|
T Consensus 236 ~g~~~fFkg-------------~~yWr~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG---------- 292 (365)
T 3ba0_A 236 RNQVFLFKD-------------DKYWLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVD---------- 292 (365)
T ss_dssp GTEEEEEET-------------TEEEECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEET----------
T ss_pred CCEEEEEeC-------------CEEEEEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEEC----------
Confidence 689999977 346777653211 1 122222334321 22344444 579999977
Q ss_pred eceEEEEECCCCceEEeccC-----CCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCC
Q 007468 208 YNDLYVFDLDQFKWQEIKPR-----FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT 281 (602)
Q Consensus 208 ~~~v~~yd~~t~~W~~v~~~-----~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t 281 (602)
+..|+||..+.+-..--+. .++ +|. .. -++... ++.+|+|=|. ..|+||..+
T Consensus 293 -~~yw~yd~~~~~v~~gyPk~I~~~f~g-~p~-~i-DaA~~~~~g~~YfFkg~------------------~ywr~d~~~ 350 (365)
T 3ba0_A 293 -NQYWRYDERRQMMDPGYPKLITKNFQG-IGP-KI-DAVFYSKNKYYYFFQGS------------------NQFEYDFLL 350 (365)
T ss_dssp -TEEEEEETTTTEECSSCCCCHHHHSTT-CCS-SC-SEEEEETTTEEEEEETT------------------EEEEEETTT
T ss_pred -CEEEEEeCCcceecCCCCcchhhcCCC-CCC-cc-ceeeEecCCcEEEEeCC------------------EEEEEECCc
Confidence 4689999766431110010 001 121 22 233334 8899998763 388999887
Q ss_pred CeeEEe
Q 007468 282 WEWSKV 287 (602)
Q Consensus 282 ~~W~~l 287 (602)
.+-..+
T Consensus 351 ~~v~~~ 356 (365)
T 3ba0_A 351 QRITKT 356 (365)
T ss_dssp TEEEEE
T ss_pred cEEecc
Confidence 766553
No 252
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=80.00 E-value=66 Score=36.99 Aligned_cols=110 Identities=11% Similarity=0.109 Sum_probs=56.7
Q ss_pred eEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCc
Q 007468 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQER 151 (602)
Q Consensus 72 ~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~ 151 (602)
.++++.| ++.+++.|+. -..|++|+..+..-..... ....-.+++...+.+++.|+.+
T Consensus 21 ~~lafsp--dg~~lAsgs~---------Dg~I~lw~~~~~~~~~~~~----~~~~V~~l~fspg~~L~S~s~D------- 78 (902)
T 2oaj_A 21 IAAAFDF--TQNLLAIATV---------TGEVHIYGQQQVEVVIKLE----DRSAIKEMRFVKGIYLVVINAK------- 78 (902)
T ss_dssp EEEEEET--TTTEEEEEET---------TSEEEEECSTTCEEEEECS----SCCCEEEEEEETTTEEEEEETT-------
T ss_pred EEEEECC--CCCEEEEEeC---------CCEEEEEeCCCcEEEEEcC----CCCCEEEEEEcCCCEEEEEECc-------
Confidence 3455565 6778888873 2467888877655433211 1111122222334444555432
Q ss_pred ceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCce
Q 007468 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (602)
Q Consensus 152 ~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W 221 (602)
..+.++|+.+.+-...-. .+ ..-.++.+ ++..++.|+.+ ..|.+||+.+..-
T Consensus 79 ----~~v~lWd~~~~~~~~~~~--~~---~~V~~v~~sp~g~~l~sgs~d---------g~V~lwd~~~~~~ 132 (902)
T 2oaj_A 79 ----DTVYVLSLYSQKVLTTVF--VP---GKITSIDTDASLDWMLIGLQN---------GSMIVYDIDRDQL 132 (902)
T ss_dssp ----CEEEEEETTTCSEEEEEE--CS---SCEEEEECCTTCSEEEEEETT---------SCEEEEETTTTEE
T ss_pred ----CeEEEEECCCCcEEEEEc--CC---CCEEEEEECCCCCEEEEEcCC---------CcEEEEECCCCcc
Confidence 457888888765322111 11 11122333 45556666643 4678889887654
No 253
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=79.83 E-value=48 Score=32.47 Aligned_cols=103 Identities=13% Similarity=0.101 Sum_probs=55.5
Q ss_pred CEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEE
Q 007468 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWM 160 (602)
Q Consensus 82 ~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~~ 160 (602)
+.+++.|+. -..+.+||+.+..-..+.... ....-.+++.. ++.+++.|+.+ ..+.+
T Consensus 139 ~~~l~s~s~---------dg~i~~wd~~~~~~~~~~~~~--~~~~i~~~~~~pdg~~lasg~~d-----------g~i~i 196 (343)
T 3lrv_A 139 TEYFIWADN---------RGTIGFQSYEDDSQYIVHSAK--SDVEYSSGVLHKDSLLLALYSPD-----------GILDV 196 (343)
T ss_dssp CCEEEEEET---------TCCEEEEESSSSCEEEEECCC--SSCCCCEEEECTTSCEEEEECTT-----------SCEEE
T ss_pred CCEEEEEeC---------CCcEEEEECCCCcEEEEEecC--CCCceEEEEECCCCCEEEEEcCC-----------CEEEE
Confidence 456666662 246889999888765443222 11112223332 56777777753 35888
Q ss_pred EECCCCcEE--EcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCc
Q 007468 161 LDLKTNQWE--QLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (602)
Q Consensus 161 yd~~t~~W~--~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~ 220 (602)
||+.+..-. .+.. . ....-.++.+ ++.+++.|+ . +.+.+||+.+..
T Consensus 197 wd~~~~~~~~~~~~~--~--h~~~v~~l~fs~~g~~l~s~~-~---------~~v~iwd~~~~~ 246 (343)
T 3lrv_A 197 YNLSSPDQASSRFPV--D--EEAKIKEVKFADNGYWMVVEC-D---------QTVVCFDLRKDV 246 (343)
T ss_dssp EESSCTTSCCEECCC--C--TTSCEEEEEECTTSSEEEEEE-S---------SBEEEEETTSST
T ss_pred EECCCCCCCccEEec--c--CCCCEEEEEEeCCCCEEEEEe-C---------CeEEEEEcCCCC
Confidence 999877532 2211 0 1111222333 456666665 2 268889987753
No 254
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=79.29 E-value=74 Score=34.32 Aligned_cols=181 Identities=7% Similarity=0.037 Sum_probs=90.1
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~ 178 (602)
..+..||..+.+....-... ...-.++.+ ++.+++.||.+ ..+.+||+.+.+....-.. ...
T Consensus 170 ~~v~lwd~~~~~~~~~l~~H----~~~V~~v~fspdg~~las~s~D-----------~~i~lwd~~~g~~~~~~~~-~~~ 233 (611)
T 1nr0_A 170 NTVAIFEGPPFKFKSTFGEH----TKFVHSVRYNPDGSLFASTGGD-----------GTIVLYNGVDGTKTGVFED-DSL 233 (611)
T ss_dssp SCEEEEETTTBEEEEEECCC----SSCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTCCEEEECBC-TTS
T ss_pred CeEEEEECCCCeEeeeeccc----cCceEEEEECCCCCEEEEEECC-----------CcEEEEECCCCcEeeeecc-ccc
Confidence 35777887665443321111 111223333 56677777753 3477888877764432210 000
Q ss_pred CCccc----EEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEc
Q 007468 179 PRSGH----RMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYG 252 (602)
Q Consensus 179 ~R~~h----~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~G 252 (602)
...+| .++.+ ++++++.||.+ ..+.+||+.+......-... .........+...+..++.+
T Consensus 234 ~~~~h~~~V~~v~~spdg~~l~s~s~D---------~~v~lWd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~s~ 300 (611)
T 1nr0_A 234 KNVAHSGSVFGLTWSPDGTKIASASAD---------KTIKIWNVATLKVEKTIPVG----TRIEDQQLGIIWTKQALVSI 300 (611)
T ss_dssp SSCSSSSCEEEEEECTTSSEEEEEETT---------SEEEEEETTTTEEEEEEECC----SSGGGCEEEEEECSSCEEEE
T ss_pred cccccCCCEEEEEECCCCCEEEEEeCC---------CeEEEEeCCCCceeeeecCC----CCccceeEEEEEcCCEEEEE
Confidence 11122 22333 56677777753 46888999887654432221 11111122233456666666
Q ss_pred CccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEeccccccccccccccccccC
Q 007468 253 GYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLN 331 (602)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~n 331 (602)
+.++. +..+++.+..-..... |. ...-.++++. +++.++.|+.+ .
T Consensus 301 s~d~~----------------i~~~~~~~~~~~~~~~-gh---~~~v~~l~~spdg~~l~s~s~D--------------~ 346 (611)
T 1nr0_A 301 SANGF----------------INFVNPELGSIDQVRY-GH---NKAITALSSSADGKTLFSADAE--------------G 346 (611)
T ss_dssp ETTCC----------------EEEEETTTTEEEEEEC-CC---SSCEEEEEECTTSSEEEEEETT--------------S
T ss_pred eCCCc----------------EEEEeCCCCCcceEEc-CC---CCCEEEEEEeCCCCEEEEEeCC--------------C
Confidence 66554 6677776655322211 11 1112233333 56677777654 3
Q ss_pred eeEEEECCCCceE
Q 007468 332 ELYGFQLDNHRWY 344 (602)
Q Consensus 332 dv~~yd~~t~~W~ 344 (602)
.|.++|+.+....
T Consensus 347 ~v~~Wd~~~~~~~ 359 (611)
T 1nr0_A 347 HINSWDISTGISN 359 (611)
T ss_dssp CEEEEETTTCCEE
T ss_pred cEEEEECCCCcee
Confidence 4778887776543
No 255
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=79.08 E-value=43 Score=31.54 Aligned_cols=159 Identities=7% Similarity=0.024 Sum_probs=84.3
Q ss_pred eEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCC
Q 007468 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (602)
Q Consensus 72 ~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~ 149 (602)
+.+++.+. ++.||+.-. ..+.|++|++....-..+..... . .-..+++. ++.||+.....
T Consensus 82 ~~ia~d~~-~~~lyv~d~---------~~~~I~~~~~~g~~~~~~~~~~~--~-~P~~i~vd~~~g~lyv~~~~~----- 143 (267)
T 1npe_A 82 EGIALDHL-GRTIFWTDS---------QLDRIEVAKMDGTQRRVLFDTGL--V-NPRGIVTDPVRGNLYWTDWNR----- 143 (267)
T ss_dssp EEEEEETT-TTEEEEEET---------TTTEEEEEETTSCSCEEEECSSC--S-SEEEEEEETTTTEEEEEECCS-----
T ss_pred cEEEEEec-CCeEEEEEC---------CCCEEEEEEcCCCCEEEEEECCC--C-CccEEEEeeCCCEEEEEECCC-----
Confidence 34444432 356776543 12467788876544333322111 1 12333343 58899875321
Q ss_pred CcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccC
Q 007468 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (602)
Q Consensus 150 ~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~ 227 (602)
....++++++....-..+...+ ...-.++++- +++||+.--. .+.|++||+....-..+...
T Consensus 144 ----~~~~I~~~~~dg~~~~~~~~~~---~~~P~gia~d~~~~~lyv~d~~---------~~~I~~~~~~g~~~~~~~~~ 207 (267)
T 1npe_A 144 ----DNPKIETSHMDGTNRRILAQDN---LGLPNGLTFDAFSSQLCWVDAG---------THRAECLNPAQPGRRKVLEG 207 (267)
T ss_dssp ----SSCEEEEEETTSCCCEEEECTT---CSCEEEEEEETTTTEEEEEETT---------TTEEEEEETTEEEEEEEEEC
T ss_pred ----CCcEEEEEecCCCCcEEEEECC---CCCCcEEEEcCCCCEEEEEECC---------CCEEEEEecCCCceEEEecC
Confidence 1246888887654433332211 1222344443 5689987432 36799999876432222211
Q ss_pred CCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe
Q 007468 228 FGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (602)
Q Consensus 228 ~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l 287 (602)
. ..| +++++.++.||+.-.... .+++||+.+.+-...
T Consensus 208 --~--~~P---~gi~~d~~~lyva~~~~~----------------~v~~~d~~~g~~~~~ 244 (267)
T 1npe_A 208 --L--QYP---FAVTSYGKNLYYTDWKTN----------------SVIAMDLAISKEMDT 244 (267)
T ss_dssp --C--CSE---EEEEEETTEEEEEETTTT----------------EEEEEETTTTEEEEE
T ss_pred --C--CCc---eEEEEeCCEEEEEECCCC----------------eEEEEeCCCCCceEE
Confidence 1 223 345566899999654433 389999987765544
No 256
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=79.03 E-value=41 Score=34.36 Aligned_cols=17 Identities=12% Similarity=0.311 Sum_probs=12.7
Q ss_pred cccEEEEE-CCEEEEEcC
Q 007468 181 SGHRMVLY-KHKIIVFGG 197 (602)
Q Consensus 181 ~~h~~~~~-~~~Lyv~GG 197 (602)
..|++++. ++.||.+|-
T Consensus 168 ~~hs~alt~~G~v~~wG~ 185 (389)
T 3kci_A 168 GAHSACVTAAGDLYTWGK 185 (389)
T ss_dssp SSEEEEEETTSCEEEEEC
T ss_pred cCeEEEEeCCCeEEEeCC
Confidence 45666666 679999984
No 257
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=78.89 E-value=11 Score=35.89 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=36.3
Q ss_pred CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCC-CCCC------CccceeEEE--eCCEEEEEcCccCCCC
Q 007468 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGS-MWPS------PRSGFQFFV--YQDEVFLYGGYSKEVS 259 (602)
Q Consensus 189 ~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~-~~P~------~R~~~~~~~--~~~~Iyv~GG~~~~~~ 259 (602)
++++|+|-| +..|+||..+.+...- +.+-. ..|. +..--++.. .++++|+|-|.
T Consensus 127 ~gk~yfFkG-----------~~yw~~d~~~~~~~~g-Pk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG~----- 189 (225)
T 3oyo_A 127 GKEVYLFKG-----------NKYVRIAYDSKQLVGN-IRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKGQ----- 189 (225)
T ss_dssp TTEEEEEET-----------TEEEEEETTTTEEEEE-EEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEETT-----
T ss_pred CCcEEEEeC-----------CeEEEEECCCCeecCC-CcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEECC-----
Confidence 689999987 4689999766544321 11000 0111 222223333 37899999774
Q ss_pred CccCCCCCCceeeeEEEEeCC
Q 007468 260 TDKNQSEKGIIHSDLWSLDPR 280 (602)
Q Consensus 260 ~~~~~~~~~~~~~dv~~yd~~ 280 (602)
..|+||..
T Consensus 190 -------------~ywr~d~~ 197 (225)
T 3oyo_A 190 -------------NYVRIDFT 197 (225)
T ss_dssp -------------EEEEEECC
T ss_pred -------------EEEEEeCC
Confidence 37899886
No 258
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=78.84 E-value=62 Score=33.19 Aligned_cols=150 Identities=9% Similarity=0.070 Sum_probs=82.8
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceE
Q 007468 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (602)
Q Consensus 134 ~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v 211 (602)
++.||+.... ...+.+||+.++.-..+... ....+ .++. ++.||+..... ...+
T Consensus 141 ~g~lyv~d~~-----------~~~I~~id~~~g~~~~~~~~----~~~~~-ia~~~~g~~l~~~d~~~--------~~~I 196 (409)
T 3hrp_A 141 NNTVLAYQRD-----------DPRVRLISVDDNKVTTVHPG----FKGGK-PAVTKDKQRVYSIGWEG--------THTV 196 (409)
T ss_dssp TTEEEEEETT-----------TTEEEEEETTTTEEEEEEET----CCBCB-CEECTTSSEEEEEBSST--------TCEE
T ss_pred CCCEEEEecC-----------CCcEEEEECCCCEEEEeecc----CCCCc-eeEecCCCcEEEEecCC--------CceE
Confidence 5788888652 24689999998876665442 12223 2322 44677664321 1278
Q ss_pred EEEECCCCc-eEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEee
Q 007468 212 YVFDLDQFK-WQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (602)
Q Consensus 212 ~~yd~~t~~-W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~ 288 (602)
++|++.+.. ...+..... +....-+++++. ++.||+... . ..+++||+.+.....+.
T Consensus 197 ~~~d~~~~~~~~~~g~~~~---~~~~~p~~iav~p~~g~lyv~d~-~----------------~~I~~~d~~~~~~~~~~ 256 (409)
T 3hrp_A 197 YVYMKASGWAPTRIGQLGS---TFSGKIGAVALDETEEWLYFVDS-N----------------KNFGRFNVKTQEVTLIK 256 (409)
T ss_dssp EEEEGGGTTCEEEEEECCT---TSCSCCCBCEECTTSSEEEEECT-T----------------CEEEEEETTTCCEEEEE
T ss_pred EEEEcCCCceeEEeeeccc---hhcCCcEEEEEeCCCCeEEEEEC-C----------------CcEEEEECCCCCEEEEe
Confidence 999987543 233321110 011122334444 688998432 1 24899999887766553
Q ss_pred cCCCCCCCCce-e-EEEEE--CCeEEEeccccccccccccccccccCeeEEEECCCC
Q 007468 289 KIGMPPGPRAG-F-SMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (602)
Q Consensus 289 ~~g~~P~~R~~-~-s~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~ 341 (602)
..+........ + .+++. ++.||+.... .+.|++|++...
T Consensus 257 ~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~--------------~~~I~~~~~~g~ 299 (409)
T 3hrp_A 257 QLELSGSLGTNPGPYLIYYFVDSNFYMSDQN--------------LSSVYKITPDGE 299 (409)
T ss_dssp ECCCCSCCCCSSCCEEEEETTTTEEEEEETT--------------TTEEEEECTTCC
T ss_pred cccccCCCCCCccccEEEeCCCCEEEEEeCC--------------CCEEEEEecCCC
Confidence 22221122222 2 56665 5788886432 356999988765
No 259
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=78.18 E-value=60 Score=32.68 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=19.7
Q ss_pred CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEee
Q 007468 245 QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (602)
Q Consensus 245 ~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~ 288 (602)
++..++.|+.++. +.+||+.+..-..+.
T Consensus 353 ~~~~l~s~s~dg~----------------v~iwd~~~~~~~~~~ 380 (447)
T 3dw8_B 353 SDSVVMTGSYNNF----------------FRMFDRNTKRDITLE 380 (447)
T ss_dssp TSSEEEEECSTTE----------------EEEEETTTCCEEEEE
T ss_pred CCCEEEEeccCCE----------------EEEEEcCCCcceeee
Confidence 5566678887665 888898877665543
No 260
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=77.81 E-value=75 Score=33.54 Aligned_cols=124 Identities=15% Similarity=0.039 Sum_probs=57.9
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCC----cEEEecCC-CC--CCC-ceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ----EWKVISSP-NS--PPP-RSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~----~W~~l~~~-~~--P~~-R~~hs~~~~-~~~iyV~GG~~~~~~~~~ 151 (602)
..+|||-|. ..+.||+||..++ +-.+...+ .. +.. ..-|..... ++ |||.--.+....
T Consensus 95 r~~l~v~~l---------~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~--- 161 (462)
T 2ece_A 95 RRFLIVPGL---------RSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGE--- 161 (462)
T ss_dssp SCEEEEEBT---------TTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSC---
T ss_pred CCEEEEccC---------CCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCC---
Confidence 355666665 2478999998877 44333210 00 001 123444444 45 887432221111
Q ss_pred ceecCeEEEEECCCCcEEEc-ccCCCCCCCcccEEEEEC-CEEEEEc---------CccCCCCCeeeeceEEEEECCCC
Q 007468 152 FHHYKDFWMLDLKTNQWEQL-NLKGCPSPRSGHRMVLYK-HKIIVFG---------GFYDTLREVRYYNDLYVFDLDQF 219 (602)
Q Consensus 152 ~~~~~dv~~yd~~t~~W~~~-~~~~~p~~R~~h~~~~~~-~~Lyv~G---------G~~~~~~~~~~~~~v~~yd~~t~ 219 (602)
.-..+.++|..|.+-... +....|..........-+ +.+|+-- |+........+.+.|.+||+.+.
T Consensus 162 --~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~ 238 (462)
T 2ece_A 162 --GPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR 238 (462)
T ss_dssp --SCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred --CCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence 136799999998753322 211112211111111223 3344331 23221100135689999999875
No 261
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=77.09 E-value=33 Score=32.36 Aligned_cols=101 Identities=20% Similarity=0.478 Sum_probs=54.6
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcE--EEecC--CCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecC
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW--KVISS--PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYK 156 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W--~~l~~--~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~ 156 (602)
++++|+|=|. .+|+|+.....+ ..+.. +.+|. .--++...++++|+|-| +
T Consensus 28 ~g~~yfFkg~-----------~~Wr~~~~~~~~~p~~Is~~wpgLP~--~IDAA~~~~~~~yfFkG-------------~ 81 (219)
T 1hxn_A 28 HGATYVFSGS-----------HYWRLDTNRDGWHSWPIAHQWPQGPS--TVDAAFSWEDKLYLIQD-------------T 81 (219)
T ss_dssp TSCEEEEETT-----------EEEESSSSSCTTCCEEGGGTCTTSCS--SCSEEEEETTEEEEEET-------------T
T ss_pred CCcEEEEeCC-----------EEEEEcCCCCCCCceEhhhhccCCCC--CccEEEEECCcEEEecC-------------C
Confidence 6889999873 456665433221 12221 12332 22234445899999977 3
Q ss_pred eEEEEECCCC-cE-----EEccc-CCCCCC--Cc-ccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCC
Q 007468 157 DFWMLDLKTN-QW-----EQLNL-KGCPSP--RS-GHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (602)
Q Consensus 157 dv~~yd~~t~-~W-----~~~~~-~~~p~~--R~-~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t 218 (602)
.+|+|+..++ +- ..+.. .|+|.. .. --+++.+ ++++|+|-| +..|+||..+
T Consensus 82 ~yw~~~~~~~~~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG-----------~~ywr~d~~~ 144 (219)
T 1hxn_A 82 KVYVFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAG-----------RRLWWLDLKS 144 (219)
T ss_dssp EEEEEECSSSCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEET-----------TEEEEEEGGG
T ss_pred EEEEEeCCCCceecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeC-----------CEEEEEeCCC
Confidence 5889986532 11 11111 123433 11 2233333 579999987 4679999755
No 262
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=76.83 E-value=57 Score=31.67 Aligned_cols=51 Identities=16% Similarity=0.101 Sum_probs=27.9
Q ss_pred eEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCc
Q 007468 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (602)
Q Consensus 157 dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~ 220 (602)
.+.+||+.+.+-...-. .....-.++.+ ++.+++.||.+ ..+.+||+.+.+
T Consensus 177 ~i~~wd~~~~~~~~~~~----~h~~~v~~~~~sp~g~~l~s~~~d---------g~i~iwd~~~~~ 229 (319)
T 3frx_A 177 MVKAWNLNQFQIEADFI----GHNSNINTLTASPDGTLIASAGKD---------GEIMLWNLAAKK 229 (319)
T ss_dssp CEEEEETTTTEEEEEEC----CCCSCEEEEEECTTSSEEEEEETT---------CEEEEEETTTTE
T ss_pred EEEEEECCcchhheeec----CCCCcEEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCc
Confidence 47788887765332211 11111122223 56777777754 368888987764
No 263
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=76.73 E-value=37 Score=37.23 Aligned_cols=88 Identities=13% Similarity=0.060 Sum_probs=44.6
Q ss_pred eEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCc
Q 007468 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQER 151 (602)
Q Consensus 72 ~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~ 151 (602)
.++.+.| +++.++++..............++++|+.+.+...+........+..+.+..-+++.++++..
T Consensus 64 ~~~~~Sp--Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-------- 133 (723)
T 1xfd_A 64 IRYEISP--DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-------- 133 (723)
T ss_dssp SEEEECT--TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET--------
T ss_pred ceEEECC--CCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC--------
Confidence 3455566 677666665311111112347899999998877666542211111111111113443444331
Q ss_pred ceecCeEEEEECCCCcEEEccc
Q 007468 152 FHHYKDFWMLDLKTNQWEQLNL 173 (602)
Q Consensus 152 ~~~~~dv~~yd~~t~~W~~~~~ 173 (602)
..++++|+.+....++..
T Consensus 134 ----~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 134 ----NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp ----TEEEEESSSSSCCEEEEC
T ss_pred ----CeEEEEECCCCceEEEec
Confidence 357888887776655543
No 264
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=76.49 E-value=37 Score=35.84 Aligned_cols=148 Identities=16% Similarity=0.287 Sum_probs=76.5
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEE--ecC--CCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCccee
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV--ISS--PNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHH 154 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~--l~~--~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~ 154 (602)
.+++|+|=|. .+|+++.....+.. +.. +.+|. .--++... ++.+|+|=|
T Consensus 272 ~ge~y~Fkg~-----------~~wr~~~~~~~~~p~~I~~~Wp~LP~--~iDAa~~~~~~g~~~fFKg------------ 326 (450)
T 1su3_A 272 RGEVMFFKDR-----------FYMRTNPFYPEVELNFISVFWPQLPN--GLEAAYEFADRDEVRFFKG------------ 326 (450)
T ss_dssp TTEEEEEETT-----------EEEECCTTSSSCEEEEGGGTCTTSCS--SCCEEEEEGGGTEEEEEET------------
T ss_pred CCeEEEEeCC-----------EEEEEcCCCCcccceehhHhccCCCC--CeeEEEEEcCCCeEEEEeC------------
Confidence 6899999884 45666554433332 111 11222 12223332 689999977
Q ss_pred cCeEEEEECCCC--cE-EEcc-cCCCCCC-CcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCce-----E
Q 007468 155 YKDFWMLDLKTN--QW-EQLN-LKGCPSP-RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW-----Q 222 (602)
Q Consensus 155 ~~dv~~yd~~t~--~W-~~~~-~~~~p~~-R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W-----~ 222 (602)
+.+|+|+..+- .+ ..+. ..+.|.. ..--++..+ ++++|+|-| +..|+||..+.+- +
T Consensus 327 -~~~W~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG-----------~~yw~yd~~~~~~~~gYPk 394 (450)
T 1su3_A 327 -NKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA-----------NKYWRYDEYKRSMDPGYPK 394 (450)
T ss_dssp -TEEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET-----------TEEEEEETTTTEECSSCSE
T ss_pred -CEEEEecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeC-----------CEEEEEeCCCccccCCCCc
Confidence 35788874321 00 1111 1123332 112233344 589999977 4789998765321 1
Q ss_pred EeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEE
Q 007468 223 EIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (602)
Q Consensus 223 ~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (602)
.+....++ +| .... +++..++++|+|-|. ..|+||..+.+=..
T Consensus 395 ~I~~~fpg-ip-~~iD-AA~~~~g~~YFFkg~------------------~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 395 MIAHDFPG-IG-HKVD-AVFMKDGFFYFFHGT------------------RQYKFDPKTKRILT 437 (450)
T ss_dssp EHHHHSTT-SC-SCCS-EEEEETTEEEEEETT------------------EEEEEETTTTEEEE
T ss_pred chhhcCCC-CC-CCcc-EEEEcCCeEEEEeCC------------------EEEEEECCcceEec
Confidence 12111111 12 1222 333458999999774 37899987766443
No 265
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=76.17 E-value=24 Score=33.31 Aligned_cols=105 Identities=20% Similarity=0.374 Sum_probs=58.1
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCc---EEEecCCCCCCC-ceeeEEEEE--CCEEEEEeCccCCCCCCccee
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE---WKVISSPNSPPP-RSAHQAVSW--KNYLYIFGGEFTSPNQERFHH 154 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~---W~~l~~~~~P~~-R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~ 154 (602)
++++|+|=| +.+|+|+..+.. =+.|.....|.. ..-.+|... ++++|+|-|
T Consensus 87 ~~k~yfFkG-----------~~yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG------------ 143 (218)
T 1gen_A 87 EEKAVFFAG-----------NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG------------ 143 (218)
T ss_dssp TTEEEEEET-----------TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET------------
T ss_pred CCEEEEEeC-----------CEEEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC------------
Confidence 588999987 367888842100 011222122322 122344443 589999977
Q ss_pred cCeEEEEECCCCcEEEc-----ccCCCCCCCcccEEEEEC--CEEEEEcCccCCCCCeeeeceEEEEECCCCc
Q 007468 155 YKDFWMLDLKTNQWEQL-----NLKGCPSPRSGHRMVLYK--HKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (602)
Q Consensus 155 ~~dv~~yd~~t~~W~~~-----~~~~~p~~R~~h~~~~~~--~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~ 220 (602)
+..|+||..+++-... ...-+..+..-.++..++ +.+|+|=| +..|+||..+..
T Consensus 144 -~~ywr~d~~~~~v~~gyPr~i~~~w~g~p~~idaAf~~~~~g~~YfFkg-----------~~y~~~~~~~~~ 204 (218)
T 1gen_A 144 -DKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKG-----------AYYLKLENQSLK 204 (218)
T ss_dssp -TEEEEEETTTTEECSSCCEEHHHHSSSCCSSCSEEEECTTTCEEEEEET-----------TEEEEEETTEEE
T ss_pred -CEEEEEECccccccCCCCcchhhccCCCCCCCCEEEEEcCCCcEEEEEC-----------CEEEEEECCcee
Confidence 4589999987643211 100011223334555555 89999977 457888875543
No 266
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=75.95 E-value=91 Score=33.58 Aligned_cols=153 Identities=10% Similarity=0.045 Sum_probs=77.6
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEec-CCCCCCCceee----EEEEE--CCEEEEEeCccCCCCCCcce
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVIS-SPNSPPPRSAH----QAVSW--KNYLYIFGGEFTSPNQERFH 153 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~-~~~~P~~R~~h----s~~~~--~~~iyV~GG~~~~~~~~~~~ 153 (602)
++.+++.|+. -..+.+||..+.+....- ... ....+| .++.+ ++.+++.|+.+
T Consensus 201 dg~~las~s~---------D~~i~lwd~~~g~~~~~~~~~~--~~~~~h~~~V~~v~~spdg~~l~s~s~D--------- 260 (611)
T 1nr0_A 201 DGSLFASTGG---------DGTIVLYNGVDGTKTGVFEDDS--LKNVAHSGSVFGLTWSPDGTKIASASAD--------- 260 (611)
T ss_dssp TSSEEEEEET---------TSCEEEEETTTCCEEEECBCTT--SSSCSSSSCEEEEEECTTSSEEEEEETT---------
T ss_pred CCCEEEEEEC---------CCcEEEEECCCCcEeeeecccc--ccccccCCCEEEEEECCCCCEEEEEeCC---------
Confidence 4556666652 246788888776654321 110 001112 12233 45666777643
Q ss_pred ecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCC
Q 007468 154 HYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP 233 (602)
Q Consensus 154 ~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P 233 (602)
..+.++|+.+.+....-..+ .........+.+.+..++.++.+ ..+..||+.+..-......
T Consensus 261 --~~v~lWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~s~d---------~~i~~~~~~~~~~~~~~~g------ 322 (611)
T 1nr0_A 261 --KTIKIWNVATLKVEKTIPVG-TRIEDQQLGIIWTKQALVSISAN---------GFINFVNPELGSIDQVRYG------ 322 (611)
T ss_dssp --SEEEEEETTTTEEEEEEECC-SSGGGCEEEEEECSSCEEEEETT---------CCEEEEETTTTEEEEEECC------
T ss_pred --CeEEEEeCCCCceeeeecCC-CCccceeEEEEEcCCEEEEEeCC---------CcEEEEeCCCCCcceEEcC------
Confidence 35788999888765432211 11111223344466666666543 3467778776542221111
Q ss_pred CCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe
Q 007468 234 SPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (602)
Q Consensus 234 ~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l 287 (602)
....-.+++.. ++..++.|+.++. +.++|+.+..-..+
T Consensus 323 h~~~v~~l~~spdg~~l~s~s~D~~----------------v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 323 HNKAITALSSSADGKTLFSADAEGH----------------INSWDISTGISNRV 361 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSC----------------EEEEETTTCCEEEC
T ss_pred CCCCEEEEEEeCCCCEEEEEeCCCc----------------EEEEECCCCceeee
Confidence 11111122222 6677777877665 77888877655443
No 267
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=75.85 E-value=83 Score=33.06 Aligned_cols=171 Identities=6% Similarity=-0.024 Sum_probs=79.1
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCC
Q 007468 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (602)
Q Consensus 102 dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R 180 (602)
.+.+||........+.... . .-.++++. ++..++.|+.. ..+.++|.....-..+.. + .
T Consensus 285 ~i~~w~~~~~~~~~~~~h~---~-~v~~~~~~~~~~~l~t~~~d-----------~~i~~w~~~~~~~~~~~~---~--~ 344 (577)
T 2ymu_A 285 TVKLWNRNGQLLQTLTGHS---S-SVWGVAFSPDGQTIASASDD-----------KTVKLWNRNGQHLQTLTG---H--S 344 (577)
T ss_dssp CEEEEETTSCEEEEECCCS---S-CEEEEEECTTSSEEEEEETT-----------SCEEEEETTSCEEEEECC---C--S
T ss_pred EEEEEeCCCcEEEEEecCC---C-CeEEEEECCCCCEEEEEeCC-----------CeEEEEeCCCCeeEEEeC---C--C
Confidence 4667776655444443211 1 11122222 44555666542 235667776655443322 1 1
Q ss_pred cccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCccCC
Q 007468 181 SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (602)
Q Consensus 181 ~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~ 257 (602)
..-.++.+ +++.++.|+.+ ..+.+||.....-..+... ..+. .++++. ++..++.|+.++.
T Consensus 345 ~~v~~~~~s~~g~~l~~~~~d---------g~v~~~~~~~~~~~~~~~~-----~~~v--~~~~~s~dg~~l~~~~~d~~ 408 (577)
T 2ymu_A 345 SSVWGVAFSPDGQTIASASDD---------KTVKLWNRNGQLLQTLTGH-----SSSV--RGVAFSPDGQTIASASDDKT 408 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETT---------SEEEEEETTCCEEEEEECC-----SSCE--EEEEECTTSSCEEEEETTSE
T ss_pred CCEEEEEECCCCCEEEEEeCC---------CEEEEEcCCCCEEEEecCC-----CCCe--EEEEECCCCCEEEEEeCCCE
Confidence 11122233 55666676643 3466777654433333222 1111 112222 5666677766544
Q ss_pred CCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEeccccccccccccccccccCeeEEE
Q 007468 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGF 336 (602)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~y 336 (602)
+.+||.....-..+... .. .-.++++. ++++++.|+.+ ..|.+|
T Consensus 409 ----------------v~~~~~~~~~~~~~~~~----~~-~v~~~~~s~d~~~l~~~~~d--------------~~v~~w 453 (577)
T 2ymu_A 409 ----------------VKLWNRNGQLLQTLTGH----SS-SVWGVAFSPDDQTIASASDD--------------KTVKLW 453 (577)
T ss_dssp ----------------EEEECTTCCEEEEEECC----SS-CEEEEEECTTSSEEEEEETT--------------SEEEEE
T ss_pred ----------------EEEEeCCCCEEEEecCC----CC-CeEEEEECCCCCEEEEEcCC--------------CEEEEE
Confidence 66777544333333211 11 11233333 56677776653 347778
Q ss_pred ECCCCce
Q 007468 337 QLDNHRW 343 (602)
Q Consensus 337 d~~t~~W 343 (602)
|.....-
T Consensus 454 ~~~~~~~ 460 (577)
T 2ymu_A 454 NRNGQLL 460 (577)
T ss_dssp ETTSCEE
T ss_pred ECCCCEE
Confidence 8655433
No 268
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=75.46 E-value=62 Score=31.40 Aligned_cols=195 Identities=11% Similarity=0.084 Sum_probs=94.3
Q ss_pred eeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCC
Q 007468 99 VYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP 177 (602)
Q Consensus 99 ~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p 177 (602)
....||++|+.+..-..+. . .+..+.- ++..+++....... ....+|++++.+.....+.. .+
T Consensus 41 ~~~~l~~~d~~~~~~~~l~-------~-~~~~~~SpDg~~la~~~~~~~~------~~~~l~~~~~~~g~~~~l~~--~~ 104 (347)
T 2gop_A 41 YENTIVIENLKNNARRFIE-------N-ATMPRISPDGKKIAFMRANEEK------KVSEIWVADLETLSSKKILE--AK 104 (347)
T ss_dssp EEEEEEEEETTTCCEEEEE-------S-CEEEEECTTSSEEEEEEEETTT------TEEEEEEEETTTTEEEEEEE--ES
T ss_pred ccceEEEEeCCCCceEEcc-------c-CCCeEECCCCCEEEEEEeccCC------CcceEEEEECCCCceEEEEc--CC
Confidence 4678999999988766651 1 1112222 34333333222110 13469999999988777654 22
Q ss_pred CCCcccEEEEE--CCEEEEEcCccCC----------------CC--CeeeeceEEEEECCCCce-EEeccCCCCCCCCCc
Q 007468 178 SPRSGHRMVLY--KHKIIVFGGFYDT----------------LR--EVRYYNDLYVFDLDQFKW-QEIKPRFGSMWPSPR 236 (602)
Q Consensus 178 ~~R~~h~~~~~--~~~Lyv~GG~~~~----------------~~--~~~~~~~v~~yd~~t~~W-~~v~~~~~~~~P~~R 236 (602)
. ...+.+ +++.++|...... +. .......++++|+.+... ..+.. +
T Consensus 105 ~----~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--------~- 171 (347)
T 2gop_A 105 N----IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--------P- 171 (347)
T ss_dssp E----EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE--------E-
T ss_pred C----ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC--------C-
Confidence 1 233334 4544444432100 00 000135799999988876 55432 1
Q ss_pred cceeEEEeCCEEEEEcCccCCCCCccCCCCCCce-eeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEeccc
Q 007468 237 SGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGII-HSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315 (602)
Q Consensus 237 ~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~-~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~ 315 (602)
....++...+.|++.+..... ..... ...+|.+| +..+..+... ....+. .-+++.++|.+.
T Consensus 172 ~~~~~~~spdg~~~~~~~~~~--------~~~~~~~~~l~~~d--~~~~~~l~~~------~~~~~~-spdg~~l~~~~~ 234 (347)
T 2gop_A 172 RFSSGIWHRDKIVVNVPHREI--------IPQYFKFWDIYIWE--DGKEEKMFEK------VSFYAV-DSDGERILLYGK 234 (347)
T ss_dssp TTCEEEEETTEEEEEEECCCS--------SCCSSCCEEEEEEE--TTEEEEEEEE------ESEEEE-EECSSCEEEEEC
T ss_pred CcccccCCCCeEEEEEecccc--------cccccccccEEEeC--CCceEEeccC------cceeeE-CCCCCEEEEEEc
Confidence 112233333335555433211 00002 45789999 6677776431 111222 345555555443
Q ss_pred cccccccccccccccCeeEEEECCCCceEEeE
Q 007468 316 VDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (602)
Q Consensus 316 ~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~ 347 (602)
.... .......||++| +..+..+.
T Consensus 235 ~~~~------~~~~~~~l~~~d--~~~~~~l~ 258 (347)
T 2gop_A 235 PEKK------YMSEHNKLYIYD--GKEVMGIL 258 (347)
T ss_dssp CSSS------CCCSSCEEEEEC--SSCEEESS
T ss_pred cccC------CccccceEEEEC--CCceEecc
Confidence 2210 011245789888 55665543
No 269
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=75.11 E-value=38 Score=37.84 Aligned_cols=150 Identities=9% Similarity=0.005 Sum_probs=81.0
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEE--ECCEEEEEcCccCCCCCeeeeceE
Q 007468 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL--YKHKIIVFGGFYDTLREVRYYNDL 211 (602)
Q Consensus 134 ~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~--~~~~Lyv~GG~~~~~~~~~~~~~v 211 (602)
++.||+.-.. .+.|+++++....-..+...++..|+ ++++ .++.||+.--. ....|
T Consensus 464 ~g~LY~tD~~-----------~~~I~v~d~dg~~~~~l~~~~~~~P~---giavDp~~g~ly~td~~--------~~~~I 521 (699)
T 1n7d_A 464 HSNIYWTDSV-----------LGTVSVADTKGVKRKTLFREQGSKPR---AIVVDPVHGFMYWTDWG--------TPAKI 521 (699)
T ss_dssp SSBCEECCTT-----------TSCEEEEBSSSCCEEEECCCSSCCCC---CEECCSSSSCCEECCCS--------SSCCE
T ss_pred CCcEEEEecc-----------CCeEEEEecCCCceEEEEeCCCCCcc---eEEEccCCCcEEEcccC--------CCCeE
Confidence 5788886321 24688899887655554332222222 2333 25778865311 02567
Q ss_pred EEEECCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeec
Q 007468 212 YVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (602)
Q Consensus 212 ~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 289 (602)
+++++....-+.+... .+..|+ ++++. ++.||+.-... ..|++|++....-..+..
T Consensus 522 ~~~~~dG~~~~~l~~~---~l~~Pn---Glavd~~~~~LY~aD~~~----------------~~I~~~d~dG~~~~~~~~ 579 (699)
T 1n7d_A 522 KKGGLNGVDIYSLVTE---NIQWPN---GITLDLLSGRLYWVDSKL----------------HSISSIDVNGGNRKTILE 579 (699)
T ss_dssp EBCCSSSCCCCEESCS---SCSSCC---CEEECTTTCCEEEEETTT----------------TEEEEECSSSSCCEEECC
T ss_pred EEEeCCCCCeeEEEeC---CCCCcc---EEEEeccCCEEEEEecCC----------------CeEEEEccCCCceEEEEe
Confidence 8887765433333221 011221 23443 67899875433 348888886544333332
Q ss_pred CCCCCCCCceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCCce
Q 007468 290 IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (602)
Q Consensus 290 ~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W 343 (602)
.. ......+++++..++||+.-.. .+.|++||+.+.+-
T Consensus 580 ~~--~~~~~P~glavd~~~lywtd~~--------------~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 580 DE--KRLAHPFSLAVFEDKVFWTDII--------------NEAIFSANRLTGSD 617 (699)
T ss_dssp CS--SSCSSCCCCEEETTEEEEECST--------------TTCEEEEETTTEEE
T ss_pred cC--CcCCCceEeEEECCEEEEEeCC--------------CCeEEEEEccCCCc
Confidence 10 1112334667788899987632 35699999876543
No 270
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=74.90 E-value=87 Score=32.85 Aligned_cols=17 Identities=24% Similarity=0.180 Sum_probs=12.8
Q ss_pred ceeEEEEE-CCeEEEecc
Q 007468 298 AGFSMCVH-KKRALLFGG 314 (602)
Q Consensus 298 ~~~s~~~~-~~~lyv~GG 314 (602)
..|++++. ++.+|.+|-
T Consensus 386 ~~hs~al~~~G~vy~wG~ 403 (473)
T 3of7_A 386 SHHSVAVAQNGIAYSWGF 403 (473)
T ss_dssp SSEEEEEETTSCEEEEEC
T ss_pred CCeEEEEeCCCcEEEeeC
Confidence 45777776 678999984
No 271
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=74.45 E-value=35 Score=34.91 Aligned_cols=108 Identities=15% Similarity=0.179 Sum_probs=61.0
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCc--E-EEecCCCCCCC-ceeeEEEEE--CCEEEEEeCccCCCCCCccee
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--W-KVISSPNSPPP-RSAHQAVSW--KNYLYIFGGEFTSPNQERFHH 154 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~--W-~~l~~~~~P~~-R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~ 154 (602)
++++|+|=| +.+|+|+..... + +.+....+|.. ..--++... ++++|+|-|
T Consensus 236 ~g~~~fFkg-----------~~yWr~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG------------ 292 (365)
T 3ba0_A 236 RNQVFLFKD-----------DKYWLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVD------------ 292 (365)
T ss_dssp GTEEEEEET-----------TEEEECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEET------------
T ss_pred CCEEEEEeC-----------CEEEEEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEEC------------
Confidence 588999877 256777643211 1 12332223331 122333334 479999977
Q ss_pred cCeEEEEECCCCcEEEcccCC----C-CCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEE
Q 007468 155 YKDFWMLDLKTNQWEQLNLKG----C-PSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE 223 (602)
Q Consensus 155 ~~dv~~yd~~t~~W~~~~~~~----~-p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~ 223 (602)
+..|+||..+++-..--+.. . ..+..-.+++.+ ++++|.|=| +..|+||..+.+-..
T Consensus 293 -~~yw~yd~~~~~v~~gyPk~I~~~f~g~p~~iDaA~~~~~g~~YfFkg-----------~~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 293 -NQYWRYDERRQMMDPGYPKLITKNFQGIGPKIDAVFYSKNKYYYFFQG-----------SNQFEYDFLLQRITK 355 (365)
T ss_dssp -TEEEEEETTTTEECSSCCCCHHHHSTTCCSSCSEEEEETTTEEEEEET-----------TEEEEEETTTTEEEE
T ss_pred -CEEEEEeCCcceecCCCCcchhhcCCCCCCccceeeEecCCcEEEEeC-----------CEEEEEECCccEEec
Confidence 46899998776432211110 0 122233455556 889999977 468999988766544
No 272
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=74.22 E-value=74 Score=33.44 Aligned_cols=153 Identities=10% Similarity=0.176 Sum_probs=78.5
Q ss_pred EEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEc--ccC--CCCCCCcccEEEEE--CCEEEEEcCccCCC
Q 007468 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL--NLK--GCPSPRSGHRMVLY--KHKIIVFGGFYDTL 202 (602)
Q Consensus 129 s~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~--~~~--~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~ 202 (602)
+++.+.+.+|+|-|. -+|+++.....+... ... ++|. .--++... ++++|+|=|
T Consensus 267 Ai~~~~ge~y~Fkg~-------------~~wr~~~~~~~~~p~~I~~~Wp~LP~--~iDAa~~~~~~g~~~fFKg----- 326 (450)
T 1su3_A 267 AITTIRGEVMFFKDR-------------FYMRTNPFYPEVELNFISVFWPQLPN--GLEAAYEFADRDEVRFFKG----- 326 (450)
T ss_dssp EEEEETTEEEEEETT-------------EEEECCTTSSSCEEEEGGGTCTTSCS--SCCEEEEEGGGTEEEEEET-----
T ss_pred eEEecCCeEEEEeCC-------------EEEEEcCCCCcccceehhHhccCCCC--CeeEEEEEcCCCeEEEEeC-----
Confidence 455578999999873 467776654433221 111 1232 12233333 689999977
Q ss_pred CCeeeeceEEEEECCCC--ce-EEec-cCCCCCCCC--CccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEE
Q 007468 203 REVRYYNDLYVFDLDQF--KW-QEIK-PRFGSMWPS--PRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLW 275 (602)
Q Consensus 203 ~~~~~~~~v~~yd~~t~--~W-~~v~-~~~~~~~P~--~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~ 275 (602)
+.+|+|+..+. .+ ..+. .. + +|. .....+.... ++++|+|=|. ..|
T Consensus 327 ------~~~W~~~~~~~~~gyP~~i~~~~--g-~P~~~~~IDAA~~~~~~~k~yfFkG~------------------~yw 379 (450)
T 1su3_A 327 ------NKYWAVQGQNVLHGYPKDIYSSF--G-FPRTVKHIDAALSEENTGKTYFFVAN------------------KYW 379 (450)
T ss_dssp ------TEEEEEETTEECTTCSEEHHHHH--C-CCTTCCCCCEEEEETTTTEEEEEETT------------------EEE
T ss_pred ------CEEEEecCCcccCCCceeeehhh--c-CCCCCCccceEEEEcCCCeEEEEeCC------------------EEE
Confidence 35677764321 01 1111 00 0 121 1222222222 6899999773 389
Q ss_pred EEeCCCCeeEE-----eecCCCCCCCCceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCCceEE
Q 007468 276 SLDPRTWEWSK-----VKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (602)
Q Consensus 276 ~yd~~t~~W~~-----l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~ 345 (602)
+||..+.+-.. +.. +.+-.+..--+++..++++|+|=|. ..|.||..+.+=..
T Consensus 380 ~yd~~~~~~~~gYPk~I~~-~fpgip~~iDAA~~~~g~~YFFkg~----------------~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 380 RYDEYKRSMDPGYPKMIAH-DFPGIGHKVDAVFMKDGFFYFFHGT----------------RQYKFDPKTKRILT 437 (450)
T ss_dssp EEETTTTEECSSCSEEHHH-HSTTSCSCCSEEEEETTEEEEEETT----------------EEEEEETTTTEEEE
T ss_pred EEeCCCccccCCCCcchhh-cCCCCCCCccEEEEcCCeEEEEeCC----------------EEEEEECCcceEec
Confidence 99876543110 110 0001122223444568999999774 37899987765443
No 273
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=73.33 E-value=37 Score=39.63 Aligned_cols=148 Identities=16% Similarity=0.133 Sum_probs=78.4
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEE-EEECCCCcEEEcccCCCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFW-MLDLKTNQWEQLNLKGCPSP 179 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~-~yd~~t~~W~~~~~~~~p~~ 179 (602)
..++.++..+.....+... +..+..+.+.. ++..+++++. ...+| +|++.+.....+.. ...
T Consensus 317 ~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~s-dg~~l~~~s~-----------~~~l~~~~d~~~~~~~~l~~---~~~ 379 (1045)
T 1k32_A 317 GQAFIQDVSGTYVLKVPEP--LRIRYVRRGGD-TKVAFIHGTR-----------EGDFLGIYDYRTGKAEKFEE---NLG 379 (1045)
T ss_dssp TEEEEECTTSSBEEECSCC--SCEEEEEECSS-SEEEEEEEET-----------TEEEEEEEETTTCCEEECCC---CCC
T ss_pred CEEEEEcCCCCceEEccCC--CcceEEeeeEc-CCCeEEEEEC-----------CCceEEEEECCCCCceEecC---Ccc
Confidence 3678888887776655321 11122222333 5554444432 13688 99998887666542 111
Q ss_pred CcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCccC
Q 007468 180 RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSK 256 (602)
Q Consensus 180 R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~ 256 (602)
....+.+ +++.+++++.. ..+++||+.+..-..+... ..... ..++.. +++.+++++...
T Consensus 380 --~~~~~~~SpDG~~la~~~~~---------~~v~~~d~~tg~~~~~~~~-----~~~~v-~~~~~SpDG~~la~~~~~~ 442 (1045)
T 1k32_A 380 --NVFAMGVDRNGKFAVVANDR---------FEIMTVDLETGKPTVIERS-----REAMI-TDFTISDNSRFIAYGFPLK 442 (1045)
T ss_dssp --SEEEEEECTTSSEEEEEETT---------SEEEEEETTTCCEEEEEEC-----SSSCC-CCEEECTTSCEEEEEEEEC
T ss_pred --ceeeeEECCCCCEEEEECCC---------CeEEEEECCCCceEEeccC-----CCCCc-cceEECCCCCeEEEEecCc
Confidence 1222333 56666665532 4799999998877666532 11111 122222 566556655432
Q ss_pred CCCCccCCCCCCceeeeEEEEeCCCCeeEEee
Q 007468 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (602)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~ 288 (602)
.. .........++++|+.+.....+.
T Consensus 443 ~~------~~~~~~~~~i~l~d~~~g~~~~l~ 468 (1045)
T 1k32_A 443 HG------ETDGYVMQAIHVYDMEGRKIFAAT 468 (1045)
T ss_dssp SS------TTCSCCEEEEEEEETTTTEEEECS
T ss_pred cc------cccCCCCCeEEEEECCCCcEEEee
Confidence 00 000123467999999887755443
No 274
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=72.36 E-value=1.3e+02 Score=33.93 Aligned_cols=174 Identities=9% Similarity=0.079 Sum_probs=92.6
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCC----cEEEcccCC
Q 007468 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN----QWEQLNLKG 175 (602)
Q Consensus 102 dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~----~W~~~~~~~ 175 (602)
.+..+++....+..+.. ..+...++++. .+.||+.-.. ...|+++++... ....+...+
T Consensus 405 ~Ir~i~l~~~~~~~l~~----~~~~~~gl~~d~~~~~lY~sD~~-----------~~~I~~~~l~g~~~~~~~~~vi~~~ 469 (791)
T 3m0c_C 405 EVRKMTLDRSEYTSLIP----NLRNVVALDTEVASNRIYWSDLS-----------QRMICSTQLDRAHGVSSYDTVISRD 469 (791)
T ss_dssp SEEEECTTSCCCEEEEC----SCSSEEEEEEETTTTEEEEEETT-----------TTEEEEEEC--------CEEEECSS
T ss_pred ceeEeeccCCcceeeec----CCCceEEEeecccCCeeEEeecc-----------ceeEEEEeccCCCCCcceeEEEecC
Confidence 45666666666665543 22333344443 5789988542 245778887652 223332211
Q ss_pred CCCCCcccEEEE--ECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEE
Q 007468 176 CPSPRSGHRMVL--YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLY 251 (602)
Q Consensus 176 ~p~~R~~h~~~~--~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~ 251 (602)
+..| .++++ +++.||+.-.. .+.|+++++....-..+... .+..|+ ++++. ++.||+.
T Consensus 470 l~~P---~GLAvD~~~~~LY~tD~~---------~~~I~v~~ldG~~~~~l~~~---~l~~P~---gIaVDp~~g~LYwt 531 (791)
T 3m0c_C 470 IQAP---DGLAVDWIHSNIYWTDSV---------LGTVSVADTKGVKRKTLFRE---NGSKPR---AIVVDPVHGFMYWT 531 (791)
T ss_dssp CSCC---CEEEEETTTTEEEEEETT---------TTEEEEEETTSSSEEEEEEC---TTCCEE---EEEEETTTTEEEEE
T ss_pred CCCc---ceeeeeecCCcEEEEecC---------CCeEEEEeCCCCeEEEEEeC---CCCCcc---eEEEecCCCCEEEe
Confidence 2111 23444 26799987432 46789999987655555332 112333 34443 6899987
Q ss_pred cCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE--CCeEEEeccccccccccccccccc
Q 007468 252 GGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLF 329 (602)
Q Consensus 252 GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~--~~~lyv~GG~~~~~~~~~~~~~~~ 329 (602)
--.. ...|+++++....-..+...+ + ..-.++++- +++||+.-..
T Consensus 532 D~g~---------------~~~I~~~~~dG~~~~~lv~~~-l---~~P~GLavD~~~~~LYwaD~~-------------- 578 (791)
T 3m0c_C 532 DWGT---------------PAKIKKGGLNGVDIYSLVTEN-I---QWPNGITLDLLSGRLYWVDSK-------------- 578 (791)
T ss_dssp ECSS---------------SCEEEEEETTSCCEEEEECSS-C---SCEEEEEEETTTTEEEEEETT--------------
T ss_pred cCCC---------------CCeEEEEecCCCceEEEEeCC-C---CCceEEEEecCCCeEEEEeCC--------------
Confidence 4211 134888888765444443321 1 112244444 7889997322
Q ss_pred cCeeEEEECCCC
Q 007468 330 LNELYGFQLDNH 341 (602)
Q Consensus 330 ~ndv~~yd~~t~ 341 (602)
.+.|+++++...
T Consensus 579 ~~~I~~~d~dG~ 590 (791)
T 3m0c_C 579 LHSISSIDVNGG 590 (791)
T ss_dssp TTEEEEEETTSC
T ss_pred CCcEEEEecCCC
Confidence 356889888653
No 275
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=72.04 E-value=74 Score=30.79 Aligned_cols=107 Identities=13% Similarity=0.116 Sum_probs=54.1
Q ss_pred eCcEEEEEcCCCcE-EEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCccee-cCeEEEEECCCCcEEEcccCCCC
Q 007468 100 YGDLYRYDVEKQEW-KVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHH-YKDFWMLDLKTNQWEQLNLKGCP 177 (602)
Q Consensus 100 ~~dv~~yd~~~~~W-~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~-~~dv~~yd~~t~~W~~~~~~~~p 177 (602)
...||++|+.++.. ..+.. + .....+...+.+++.+....... ... ...+|.+| +..+..+.. .
T Consensus 151 ~~~l~~~d~~~~~~~~~l~~---~---~~~~~~~spdg~~~~~~~~~~~~---~~~~~~~l~~~d--~~~~~~l~~---~ 216 (347)
T 2gop_A 151 KTTFWIFDTESEEVIEEFEK---P---RFSSGIWHRDKIVVNVPHREIIP---QYFKFWDIYIWE--DGKEEKMFE---K 216 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE---E---TTCEEEEETTEEEEEEECCCSSC---CSSCCEEEEEEE--TTEEEEEEE---E
T ss_pred cceEEEEECCCCeEEeeecC---C---CcccccCCCCeEEEEEecccccc---cccccccEEEeC--CCceEEecc---C
Confidence 35799999999887 66643 1 22233333333554443321100 001 35789999 777777654 1
Q ss_pred CCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEecc
Q 007468 178 SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (602)
Q Consensus 178 ~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~ 226 (602)
.....+.-+++.+++.+..... .......++.+| +..+..+..
T Consensus 217 ---~~~~~~spdg~~l~~~~~~~~~-~~~~~~~l~~~d--~~~~~~l~~ 259 (347)
T 2gop_A 217 ---VSFYAVDSDGERILLYGKPEKK-YMSEHNKLYIYD--GKEVMGILD 259 (347)
T ss_dssp ---ESEEEEEECSSCEEEEECCSSS-CCCSSCEEEEEC--SSCEEESST
T ss_pred ---cceeeECCCCCEEEEEEccccC-CccccceEEEEC--CCceEeccc
Confidence 1222234455444444432210 011245789998 666666543
No 276
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=72.00 E-value=1.4 Score=45.16 Aligned_cols=53 Identities=9% Similarity=0.062 Sum_probs=25.4
Q ss_pred CeEEEEECCCC--cEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCC--ceEE
Q 007468 156 KDFWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQE 223 (602)
Q Consensus 156 ~dv~~yd~~t~--~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~--~W~~ 223 (602)
..++.||..+. .|+.-. + + . ..+.++.++.+|+.++.+ ..+++||..+. .|..
T Consensus 19 g~v~a~d~~tG~~~W~~~~--~-~-~--~s~p~~~~g~~~v~~s~d---------g~l~a~d~~tG~~~w~~ 75 (369)
T 2hz6_A 19 GSLHAVSKRTGSIKWTLKE--D-P-V--LQVPTHVEEPAFLPDPND---------GSLYTLGSKNNEGLTKL 75 (369)
T ss_dssp SEEEEEETTTCCEEEEEEC--C-C-S--CCCC-----CCEEECTTT---------CCEEEC-----CCSEEC
T ss_pred CEEEEEECCCCCEEEEecC--C-C-c--eecceEcCCCEEEEeCCC---------CEEEEEECCCCceeeee
Confidence 35889998877 476543 1 1 1 112234567788776532 45889998664 4653
No 277
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=71.83 E-value=37 Score=31.34 Aligned_cols=102 Identities=18% Similarity=0.415 Sum_probs=57.8
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcE---EEecCC--CCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcce
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW---KVISSP--NSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFH 153 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W---~~l~~~--~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~ 153 (602)
++++|+|-| +.+|+|+..+... +.+... .+|..+. -+|... ++++|+|-|
T Consensus 61 ~g~~yfFkg-----------~~yw~~~~~~~~~gyPk~I~~~~~glP~~~I-DAA~~~~~~g~~yfFkG----------- 117 (196)
T 3c7x_A 61 DGKFVFFKG-----------DKHWVFDEASLEPGYPKHIKELGRGLPTDKI-DAALFWMPNGKTYFFRG----------- 117 (196)
T ss_dssp TSCEEEEET-----------TEEEEEETTEECTTCSEEGGGTCBSCCSSCC-SEEEEETTTTEEEEEET-----------
T ss_pred CCcEEEecC-----------CEEEEEeCCcccCCCCeEhhhcCCCCCCCcc-cEEEEEccCCEEEEEEC-----------
Confidence 688999987 3678887542110 122221 1332222 233333 589999977
Q ss_pred ecCeEEEEECCCCcEEE-----ccc-CCCCCCCcccEEEEE-CC-EEEEEcCccCCCCCeeeeceEEEEECCCCc
Q 007468 154 HYKDFWMLDLKTNQWEQ-----LNL-KGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (602)
Q Consensus 154 ~~~dv~~yd~~t~~W~~-----~~~-~~~p~~R~~h~~~~~-~~-~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~ 220 (602)
+..|+||..+++-.. +.. .++| ..-.++..+ ++ ++|+|-| +..|+||..+.+
T Consensus 118 --~~yw~yd~~~~~v~~gyPk~i~~~~gip--~~idaAf~~~~~~~~YfFkg-----------~~y~r~d~~~~~ 177 (196)
T 3c7x_A 118 --NKYYRFNEELRAVDSEYPKNIKVWEGIP--ESPRGSFMGSDEVFTYFYKG-----------NKYWKFNNQKLK 177 (196)
T ss_dssp --TEEEEEETTTTEECTTCSEEGGGSBTCC--SSCSEEEECTTSSEEEEEET-----------TEEEEEETTTTE
T ss_pred --CEEEEEeCCcccccCCCCccHHHCCCcC--CCcceeEEecCCCEEEEEEC-----------CEEEEEECCcce
Confidence 357999988764321 111 1223 223444445 44 8999977 468999987753
No 278
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=71.48 E-value=99 Score=32.02 Aligned_cols=212 Identities=15% Similarity=0.141 Sum_probs=106.3
Q ss_pred EEeeccCCCCCCCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEE---EEcCCCcEE-EecCCCCCCCceeeEEEE
Q 007468 57 VHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYR---YDVEKQEWK-VISSPNSPPPRSAHQAVS 132 (602)
Q Consensus 57 ~~~~~~~~~P~~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~---yd~~~~~W~-~l~~~~~P~~R~~hs~~~ 132 (602)
|.+++++..|..-.-|+++.+ ++.-|.+|=...+-.+. -+.-+|+ |+.-...-+ .+++- .-+.-+..+.-.
T Consensus 272 W~~t~L~~i~~vTe~HSFa~i---~~~~fa~GyHnGDv~PR-e~G~~yfs~~~~sp~~~vrr~i~se-y~~~AsEPCvky 346 (670)
T 3ju4_A 272 WRKTDLGLIPSVTEVHSFATI---DNNGFAMGYHQGDVAPR-EVGLFYFPDAFNSPSNYVRRQIPSE-YEPDASEPCIKY 346 (670)
T ss_dssp CEEEECCSCTTCSEEEEEEEC---SSSCEEEEEEECSSSSC-EEEEEEETTTTTCTTCCEEEECCGG-GCTTEEEEEEEE
T ss_pred ceecccccccceeeeeeeeEe---cCCceEEEeccCCCCcc-eeeEEEecccccCCcceeeeechhh-hccccccchhhh
Confidence 344566777777788999998 66677888553333222 1222222 111122222 33221 112233445556
Q ss_pred ECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCC------CCCee
Q 007468 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDT------LREVR 206 (602)
Q Consensus 133 ~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~------~~~~~ 206 (602)
+++.||++--..... ..-+.+.+-+.....|+.+..+ ...-....-.+.+++.||+||--... ..+.+
T Consensus 347 YdgvLyLtTRgt~~~-----~~GS~L~rs~d~Gq~w~slrfp-~nvHhtnlPFakvgD~l~mFgsERA~nEWE~G~pD~R 420 (670)
T 3ju4_A 347 YDGVLYLITRGTRGD-----RLGSSLHRSRDIGQTWESLRFP-HNVHHTTLPFAKVGDDLIMFGSERAENEWEAGAPDDR 420 (670)
T ss_dssp ETTEEEEEEEESCTT-----SCCCEEEEESSTTSSCEEEECT-TCCCSSCCCEEEETTEEEEEEECSSTTCSSTTCCCCC
T ss_pred hCCEEEEEecCcCCC-----CCcceeeeecccCCchhheecc-ccccccCCCcceeCCEEEEEeccccccccccCCCccc
Confidence 799999985322221 1235677777778899988652 12222333457789999999853211 00111
Q ss_pred ----eece-EEEEEC-----CCCceEEeccCC-CCCCCCCccceeE-EEeCCEE-EEEcCccCCCCCccC------CCCC
Q 007468 207 ----YYND-LYVFDL-----DQFKWQEIKPRF-GSMWPSPRSGFQF-FVYQDEV-FLYGGYSKEVSTDKN------QSEK 267 (602)
Q Consensus 207 ----~~~~-v~~yd~-----~t~~W~~v~~~~-~~~~P~~R~~~~~-~~~~~~I-yv~GG~~~~~~~~~~------~~~~ 267 (602)
+-.. +.+.+. +.-.|..+...- .|.+-..-.|-+. |+-++.| |||||-+....-... ....
T Consensus 421 Y~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgEd~~np~s~gdN~~k~~~~~ 500 (670)
T 3ju4_A 421 YKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDNSAKDPFKS 500 (670)
T ss_dssp SSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEBCSCCCCTTTTTTTCCTTST
T ss_pred ccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCcccCCccccccccccCcccc
Confidence 1111 222232 345688776431 1222222333333 4446665 578886543111111 1122
Q ss_pred CceeeeEEEEeC
Q 007468 268 GIIHSDLWSLDP 279 (602)
Q Consensus 268 ~~~~~dv~~yd~ 279 (602)
...-.++|+|.+
T Consensus 501 ~Ghp~dlY~~ri 512 (670)
T 3ju4_A 501 DGHPSDLYCYKM 512 (670)
T ss_dssp TCCCCEEEEEEE
T ss_pred CCCCcceEEEEE
Confidence 234567888864
No 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=70.62 E-value=83 Score=30.78 Aligned_cols=201 Identities=7% Similarity=0.002 Sum_probs=106.8
Q ss_pred cceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCC----CcEEEecCCCCCCCceeeEEEE--ECCEEEEEeCc
Q 007468 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK----QEWKVISSPNSPPPRSAHQAVS--WKNYLYIFGGE 143 (602)
Q Consensus 70 ~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~----~~W~~l~~~~~P~~R~~hs~~~--~~~~iyV~GG~ 143 (602)
.-+++++.+. ++.||+.--. .+.|+++++.. .....+.......| +.+++ .++.||+.-..
T Consensus 31 ~p~g~~~d~~-~~~ly~~D~~---------~~~I~~~~~~g~~~~~~~~~~~~~~~~~p---~glavd~~~~~ly~~d~~ 97 (316)
T 1ijq_A 31 NVVALDTEVA-SNRIYWSDLS---------QRMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAVDWIHSNIYWTDSV 97 (316)
T ss_dssp SEEEEEEETT-TTEEEEEETT---------TTEEEEEEC--------CEEEECSSCSCC---CEEEEETTTTEEEEEETT
T ss_pred ceEEEEEEeC-CCEEEEEECC---------CCcEEEEECCCCCCCcccEEEEeCCCCCc---CEEEEeecCCeEEEEECC
Confidence 3455555532 4788887641 24788999876 22222221111112 34444 36899987432
Q ss_pred cCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCce
Q 007468 144 FTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (602)
Q Consensus 144 ~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W 221 (602)
.+.+.++++....-..+....+..| ...++. ++.||+..-.. ...|+++++....-
T Consensus 98 -----------~~~I~~~~~~g~~~~~~~~~~~~~P---~~iavdp~~g~ly~~d~~~--------~~~I~~~~~dG~~~ 155 (316)
T 1ijq_A 98 -----------LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWGT--------PAKIKKGGLNGVDI 155 (316)
T ss_dssp -----------TTEEEEEETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECSS--------SCEEEEEETTSCCE
T ss_pred -----------CCEEEEEeCCCCceEEEEECCCCCc---ceEEeCCCCCEEEEEccCC--------CCeEEEEcCCCCCe
Confidence 2568889987654443322112222 234443 67899874210 25789999865443
Q ss_pred EEeccCCCCCCCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCce
Q 007468 222 QEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299 (602)
Q Consensus 222 ~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~ 299 (602)
+.+... . ...-.++++. ++.||+.-... +.|+++|+....-..+...+ .....-
T Consensus 156 ~~~~~~-----~-~~~P~gla~d~~~~~lY~~D~~~----------------~~I~~~d~dg~~~~~~~~~~--~~~~~P 211 (316)
T 1ijq_A 156 YSLVTE-----N-IQWPNGITLDLLSGRLYWVDSKL----------------HSISSIDVNGGNRKTILEDE--KRLAHP 211 (316)
T ss_dssp EEEECS-----S-CSCEEEEEEETTTTEEEEEETTT----------------TEEEEEETTSCSCEEEEECT--TTTSSE
T ss_pred EEEEEC-----C-CCCceEEEEeccCCEEEEEECCC----------------CeEEEEecCCCceEEEeecC--CccCCc
Confidence 333221 1 1112234444 78999875433 34888988654333332211 112233
Q ss_pred eEEEEECCeEEEeccccccccccccccccccCeeEEEECCCCce
Q 007468 300 FSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (602)
Q Consensus 300 ~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W 343 (602)
+++++.++.||+.-.. .+.|+++++.+.+-
T Consensus 212 ~giav~~~~ly~~d~~--------------~~~V~~~~~~~g~~ 241 (316)
T 1ijq_A 212 FSLAVFEDKVFWTDII--------------NEAIFSANRLTGSD 241 (316)
T ss_dssp EEEEEETTEEEEEETT--------------TTEEEEEETTTCCC
T ss_pred EEEEEECCEEEEEECC--------------CCeEEEEeCCCCcc
Confidence 5677788999986532 35699999866543
No 280
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=69.53 E-value=98 Score=31.15 Aligned_cols=197 Identities=11% Similarity=0.073 Sum_probs=97.9
Q ss_pred CCEEEEEcc---ee-cCCCCceeeCcEEEEEcC---CC--cEEE-ecCCC------CCCCceeeEEEEE--CCEEEEEeC
Q 007468 81 ETELILYGG---EF-YNGNKTYVYGDLYRYDVE---KQ--EWKV-ISSPN------SPPPRSAHQAVSW--KNYLYIFGG 142 (602)
Q Consensus 81 ~~~iyv~GG---~~-~~g~~~~~~~dv~~yd~~---~~--~W~~-l~~~~------~P~~R~~hs~~~~--~~~iyV~GG 142 (602)
.++|+++-- .+ ..+....-.+.|.+||+. ++ .|.. ++... .+....+..-+++ .+.+||.+-
T Consensus 76 ~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s 155 (334)
T 2p9w_A 76 SKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFA 155 (334)
T ss_dssp CCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEE
T ss_pred CCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCC
Confidence 578888621 10 112211224679999988 33 4652 21100 0001122333444 578999865
Q ss_pred ccCCCCCCcceecCeEEEEECCCCc---EEEcccCCCCCCCccc-EEEEE--CCEEEEEcCccCCCCCeeeeceEEEEEC
Q 007468 143 EFTSPNQERFHHYKDFWMLDLKTNQ---WEQLNLKGCPSPRSGH-RMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDL 216 (602)
Q Consensus 143 ~~~~~~~~~~~~~~dv~~yd~~t~~---W~~~~~~~~p~~R~~h-~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~ 216 (602)
.. +..++++++.... |-.-.+ .+..|.+. +++.. ++.|++..+ . ..+++||+
T Consensus 156 ~~----------~~~I~rV~pdG~~~~~~~~~~~--~~~~~~G~nGIv~~pdg~~Liv~~~-~---------g~L~~fD~ 213 (334)
T 2p9w_A 156 LG----------MPAIARVSADGKTVSTFAWESG--NGGQRPGYSGITFDPHSNKLIAFGG-P---------RALTAFDV 213 (334)
T ss_dssp ES----------SCEEEEECTTSCCEEEEEECCC--CSSSCCSCSEEEEETTTTEEEEESS-S---------SSEEEEEC
T ss_pred CC----------CCeEEEEeCCCCEEeeeeecCC--CcccccCcceEEEeCCCCEEEEEcC-C---------CeEEEEcC
Confidence 32 1459999987652 543222 23345454 44555 457777765 2 46899998
Q ss_pred CCCceEEeccC--CC-CCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCC
Q 007468 217 DQFKWQEIKPR--FG-SMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMP 293 (602)
Q Consensus 217 ~t~~W~~v~~~--~~-~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~ 293 (602)
.+.....++.. .. +.++.+ .+....-++++++++.-... ..+.+--..+ |......+..
T Consensus 214 ~~pv~~~v~~~~~G~~~~~~~~-dgilp~~~~G~vllV~~~~~----------------~~~~l~S~Dg-W~sa~~~g~~ 275 (334)
T 2p9w_A 214 SKPYAWPEPVKINGDFGTLSGT-EKIVTVPVGNESVLVGARAP----------------YAISFRSWDN-WKSANIKKTK 275 (334)
T ss_dssp SSSSCCCEECEESSCCCCCTTE-EEEEEEEETTEEEEEEEETT----------------EEEEEECSST-TSEEEEEEEE
T ss_pred CCCcceeecccccCCcccccCc-ccccccccCCEEEEEEcCCC----------------CEEEEECCCC-cceeEEeeee
Confidence 75332122211 00 011111 11112224777755543211 1344433344 8887665554
Q ss_pred CC---CCceeEEEE----ECCeEEEeccccc
Q 007468 294 PG---PRAGFSMCV----HKKRALLFGGVVD 317 (602)
Q Consensus 294 P~---~R~~~s~~~----~~~~lyv~GG~~~ 317 (602)
|. ++...++++ .+++||++.++..
T Consensus 276 ~~~~~~~g~tt~t~~~~~~~~~iYvv~~~f~ 306 (334)
T 2p9w_A 276 RSELQNSGFTAVADYYQGSEQGLYAVSAFFD 306 (334)
T ss_dssp CGGGGSSCEEEEEEEEETTEEEEEEEECCGG
T ss_pred cCccccCceeEEEEeccccCCeEEEEeeecC
Confidence 44 343444445 4789999987765
No 281
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=69.32 E-value=1.6e+02 Score=33.41 Aligned_cols=147 Identities=10% Similarity=0.016 Sum_probs=85.2
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceE
Q 007468 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (602)
Q Consensus 134 ~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v 211 (602)
++.||+.-.. ...|+++++....-..+....+..|| ++++. ++.||+.--. ....|
T Consensus 482 ~~~LY~tD~~-----------~~~I~v~~ldG~~~~~l~~~~l~~P~---gIaVDp~~g~LYwtD~g--------~~~~I 539 (791)
T 3m0c_C 482 HSNIYWTDSV-----------LGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDWG--------TPAKI 539 (791)
T ss_dssp TTEEEEEETT-----------TTEEEEEETTSSSEEEEEECTTCCEE---EEEEETTTTEEEEEECS--------SSCEE
T ss_pred CCcEEEEecC-----------CCeEEEEeCCCCeEEEEEeCCCCCcc---eEEEecCCCCEEEecCC--------CCCeE
Confidence 6789988532 35689999987766555432232222 34443 5789986411 02568
Q ss_pred EEEECCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCC-eeEEee
Q 007468 212 YVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW-EWSKVK 288 (602)
Q Consensus 212 ~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~-~W~~l~ 288 (602)
+++++....-..+... .+..|+ ++++- ++.||+.-... +.|+++++... ....+.
T Consensus 540 ~~~~~dG~~~~~lv~~---~l~~P~---GLavD~~~~~LYwaD~~~----------------~~I~~~d~dG~~~~~v~~ 597 (791)
T 3m0c_C 540 KKGGLNGVDIYSLVTE---NIQWPN---GITLDLLSGRLYWVDSKL----------------HSISSIDVNGGNRKTILE 597 (791)
T ss_dssp EEEETTSCCEEEEECS---SCSCEE---EEEEETTTTEEEEEETTT----------------TEEEEEETTSCSCEEEEE
T ss_pred EEEecCCCceEEEEeC---CCCCce---EEEEecCCCeEEEEeCCC----------------CcEEEEecCCCceEEEec
Confidence 9999876544444322 112222 23433 78999984332 34889988654 333333
Q ss_pred cCCCCCCCCceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCC
Q 007468 289 KIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (602)
Q Consensus 289 ~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~ 341 (602)
..+.++ ..+++++.+++||+.--. .+.|+++|..+.
T Consensus 598 ~~~~l~---~P~glav~~~~lYwtD~~--------------~~~I~~~dk~tG 633 (791)
T 3m0c_C 598 DEKRLA---HPFSLAVFEDKVFWTDII--------------NEAIFSANRLTG 633 (791)
T ss_dssp CTTTTS---SEEEEEEETTEEEEEETT--------------TTEEEEEETTTC
T ss_pred CCCccC---CCCEEEEeCCEEEEEECC--------------CCEEEEEeCCCC
Confidence 322223 345777889999987532 356787876554
No 282
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=68.46 E-value=1.1e+02 Score=31.11 Aligned_cols=174 Identities=10% Similarity=0.038 Sum_probs=99.3
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~ 178 (602)
+.|+++++.......+.. ......++++. ++.||+.--. ...++++++.....+.+...++..
T Consensus 96 ~~I~~i~~~~~~~~~~~~----~~~~~~gl~~d~~~~~ly~~D~~-----------~~~I~r~~~~g~~~~~~~~~~~~~ 160 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLN----NLENAIALDFHHRRELVFWSDVT-----------LDRILRANLNGSNVEEVVSTGLES 160 (386)
T ss_dssp SCEEEECTTSCCCEEEEC----SCSCEEEEEEETTTTEEEEEETT-----------TTEEEEEETTSCCEEEEECSSCSC
T ss_pred ccceeeccCCCcEEEEec----CCCccEEEEEecCCCeEEEEeCC-----------CCcEEEEecCCCCcEEEEeCCCCC
Confidence 467888888777766543 22233444443 5789987431 256899999888776654433322
Q ss_pred CCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCc
Q 007468 179 PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGY 254 (602)
Q Consensus 179 ~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG~ 254 (602)
| .++++. ++.||+.-.. .+.|+++++....-..+... .+..|+ .+++. ++.||+.--.
T Consensus 161 p---~glavd~~~g~lY~~d~~---------~~~I~~~~~dg~~~~~l~~~---~l~~P~---giavdp~~g~ly~td~~ 222 (386)
T 3v65_B 161 P---GGLAVDWVHDKLYWTDSG---------TSRIEVANLDGAHRKVLLWQ---SLEKPR---AIALHPMEGTIYWTDWG 222 (386)
T ss_dssp C---CCEEEETTTTEEEEEETT---------TTEEEECBTTSCSCEEEECS---SCSCEE---EEEEETTTTEEEEEECS
T ss_pred c---cEEEEEeCCCeEEEEcCC---------CCeEEEEeCCCCceEEeecC---CCCCCc---EEEEEcCCCeEEEeccC
Confidence 2 233433 7889987432 35688888876543333322 112232 34444 7889986432
Q ss_pred cCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE--CCeEEEeccccccccccccccccccCe
Q 007468 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNE 332 (602)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~nd 332 (602)
. ...|+++++....-+.+...+ ...-.++++- +++||+.-.. .+.
T Consensus 223 ~---------------~~~I~r~~~dG~~~~~~~~~~----~~~PnGlavd~~~~~lY~aD~~--------------~~~ 269 (386)
T 3v65_B 223 N---------------TPRIEASSMDGSGRRIIADTH----LFWPNGLTIDYAGRRMYWVDAK--------------HHV 269 (386)
T ss_dssp S---------------SCEEEEEETTSCSCEEEECSS----CSCEEEEEEEGGGTEEEEEETT--------------TTE
T ss_pred C---------------CCEEEEEeCCCCCcEEEEECC----CCCeeeEEEeCCCCEEEEEECC--------------CCE
Confidence 1 235889998755444443221 1122345553 7889987322 356
Q ss_pred eEEEECCC
Q 007468 333 LYGFQLDN 340 (602)
Q Consensus 333 v~~yd~~t 340 (602)
|++|+++.
T Consensus 270 I~~~d~dG 277 (386)
T 3v65_B 270 IERANLDG 277 (386)
T ss_dssp EEEECTTS
T ss_pred EEEEeCCC
Confidence 88888764
No 283
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=67.86 E-value=1.1e+02 Score=31.02 Aligned_cols=176 Identities=10% Similarity=0.017 Sum_probs=96.4
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEE--ECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS--WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~--~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~ 178 (602)
+.|+++++.......+.......| ..+++ .++.||+.-.. .+.++++++....-..+...++..
T Consensus 138 ~~I~r~~~~g~~~~~~~~~~~~~p---~glavd~~~g~lY~~d~~-----------~~~I~~~~~dg~~~~~l~~~~l~~ 203 (386)
T 3v65_B 138 DRILRANLNGSNVEEVVSTGLESP---GGLAVDWVHDKLYWTDSG-----------TSRIEVANLDGAHRKVLLWQSLEK 203 (386)
T ss_dssp TEEEEEETTSCCEEEEECSSCSCC---CCEEEETTTTEEEEEETT-----------TTEEEECBTTSCSCEEEECSSCSC
T ss_pred CcEEEEecCCCCcEEEEeCCCCCc---cEEEEEeCCCeEEEEcCC-----------CCeEEEEeCCCCceEEeecCCCCC
Confidence 468888888776665543222122 22333 36889987532 246778887665433333222222
Q ss_pred CCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEE--eCCEEEEEcCc
Q 007468 179 PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFV--YQDEVFLYGGY 254 (602)
Q Consensus 179 ~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~--~~~~Iyv~GG~ 254 (602)
| .++++. ++.||+.--.. ...|+++++....-..+.... +..| .++++ .++.||+.-..
T Consensus 204 P---~giavdp~~g~ly~td~~~--------~~~I~r~~~dG~~~~~~~~~~---~~~P---nGlavd~~~~~lY~aD~~ 266 (386)
T 3v65_B 204 P---RAIALHPMEGTIYWTDWGN--------TPRIEASSMDGSGRRIIADTH---LFWP---NGLTIDYAGRRMYWVDAK 266 (386)
T ss_dssp E---EEEEEETTTTEEEEEECSS--------SCEEEEEETTSCSCEEEECSS---CSCE---EEEEEEGGGTEEEEEETT
T ss_pred C---cEEEEEcCCCeEEEeccCC--------CCEEEEEeCCCCCcEEEEECC---CCCe---eeEEEeCCCCEEEEEECC
Confidence 2 233443 67888763211 257999998765444433220 1112 23444 38899997543
Q ss_pred cCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEeccccccccccccccccccCeeE
Q 007468 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (602)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~ 334 (602)
. ..|+++++....-..+...+ .+ .-+++++..+.||+.--. .+.|+
T Consensus 267 ~----------------~~I~~~d~dG~~~~~~~~~~-~~---~P~giav~~~~ly~td~~--------------~~~V~ 312 (386)
T 3v65_B 267 H----------------HVIERANLDGSHRKAVISQG-LP---HPFAITVFEDSLYWTDWH--------------TKSIN 312 (386)
T ss_dssp T----------------TEEEEECTTSCSCEEEECSS-CS---SEEEEEEETTEEEEEETT--------------TTEEE
T ss_pred C----------------CEEEEEeCCCCeeEEEEECC-CC---CceEEEEECCEEEEeeCC--------------CCeEE
Confidence 3 34888987653323332221 11 235677788999987432 35688
Q ss_pred EEECCCC
Q 007468 335 GFQLDNH 341 (602)
Q Consensus 335 ~yd~~t~ 341 (602)
++|..+.
T Consensus 313 ~~~~~~G 319 (386)
T 3v65_B 313 SANKFTG 319 (386)
T ss_dssp EEETTTC
T ss_pred EEECCCC
Confidence 9985444
No 284
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=67.64 E-value=1.3e+02 Score=33.55 Aligned_cols=98 Identities=11% Similarity=0.158 Sum_probs=54.2
Q ss_pred cCeEEEEECCCC--cE--EEcccCCCCCCCcccEEE-EECCEEEEEcCccCCCCCeeeeceEEEEECCC-CceEE-eccC
Q 007468 155 YKDFWMLDLKTN--QW--EQLNLKGCPSPRSGHRMV-LYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQE-IKPR 227 (602)
Q Consensus 155 ~~dv~~yd~~t~--~W--~~~~~~~~p~~R~~h~~~-~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t-~~W~~-v~~~ 227 (602)
.+++|++|+.+. .+ ..+.... ..+. +... ..++.||+..-.... ....|+.+++.+ ..|+. +-+.
T Consensus 294 ~~~l~~~d~~~~~~~~~~~~l~~~~-~~~~--~s~~~~~g~~l~~~t~~~~a-----~~~~L~~~d~~~~~~~~~~li~~ 365 (751)
T 2xe4_A 294 TAEVHLLDLRKGNAHNTLEIVRPRE-KGVR--YDVQMHGTSHLVILTNEGGA-----VNHKLLIAPRGQPSDWSHVLVDH 365 (751)
T ss_dssp CEEEEEEESSSCTTCCCEEESSCCC-TTCC--EEEEEETTTEEEEEECTTTC-----TTCEEEEEETTSTTCCCCEEECC
T ss_pred CceEEEEECCCCCCCceeEEeecCC-CCce--EEEeeeeCCEEEEEeCCCCC-----CCcEEEEEcCCCcccceeeEECC
Confidence 467999999875 46 5554311 1111 1121 237788888654311 135789999876 67876 4333
Q ss_pred CCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeC
Q 007468 228 FGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDP 279 (602)
Q Consensus 228 ~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~ 279 (602)
.....-..+...++.||+..-..+ ...++++++
T Consensus 366 -----~~~~~l~~~~~~~~~lv~~~~~~g--------------~~~l~~~dl 398 (751)
T 2xe4_A 366 -----SEDVFMESIAVRSNYLVVAGRRAG--------------LTRIWTMMA 398 (751)
T ss_dssp -----CSSEEEEEEEECSSEEEEEEEETT--------------EEEEEEEEC
T ss_pred -----CCCcEEEEEEEECCEEEEEEEeCC--------------EEEEEEEec
Confidence 111122233444777777654432 356888886
No 285
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=67.53 E-value=50 Score=31.19 Aligned_cols=101 Identities=15% Similarity=0.253 Sum_probs=58.9
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCC----CcEEE----ecC--CCCCCC--ceeeEEEEE---CCEEEEEeCccC
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEK----QEWKV----ISS--PNSPPP--RSAHQAVSW---KNYLYIFGGEFT 145 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~----~~W~~----l~~--~~~P~~--R~~hs~~~~---~~~iyV~GG~~~ 145 (602)
++++|+|=| +.+|+||..+ ..... +.. +.+|.. ...--||+. ++++|+|-|
T Consensus 70 ~g~~~fFkg-----------~~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG--- 135 (225)
T 3oyo_A 70 ASEAYVFSG-----------NHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKG--- 135 (225)
T ss_dssp TTEEEEEET-----------TEEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEET---
T ss_pred CCeEEEEcC-----------CEEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeC---
Confidence 689999988 3678887632 22221 111 112221 012223332 689999987
Q ss_pred CCCCCcceecCeEEEEECCCCcEEEcccC----CCCC------CCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEE
Q 007468 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLK----GCPS------PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYV 213 (602)
Q Consensus 146 ~~~~~~~~~~~dv~~yd~~t~~W~~~~~~----~~p~------~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~ 213 (602)
+.+|+||..+++...- +. +.|. +..-.++..+ ++++|+|-| +..|+
T Consensus 136 ----------~~yw~~d~~~~~~~~g-Pk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG-----------~~ywr 193 (225)
T 3oyo_A 136 ----------NKYVRIAYDSKQLVGN-IRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG-----------QNYVR 193 (225)
T ss_dssp ----------TEEEEEETTTTEEEEE-EEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET-----------TEEEE
T ss_pred ----------CeEEEEECCCCeecCC-CcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC-----------CEEEE
Confidence 4589999877765531 11 1121 3333455554 789999977 46889
Q ss_pred EECC
Q 007468 214 FDLD 217 (602)
Q Consensus 214 yd~~ 217 (602)
||..
T Consensus 194 ~d~~ 197 (225)
T 3oyo_A 194 IDFT 197 (225)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9987
No 286
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=63.95 E-value=2.1e+02 Score=33.03 Aligned_cols=114 Identities=11% Similarity=0.102 Sum_probs=61.2
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCC-
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP- 177 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p- 177 (602)
.++|++++.+.....+.... . ...++.+ +++.+++........ ....+|++++.+..-..+......
T Consensus 33 ~~l~~~~~~gg~~~~lt~~~----~-~v~~~~~SPDG~~la~~s~~~~~~-----~~~~i~~~d~~~g~~~~lt~~~~~~ 102 (1045)
T 1k32_A 33 DDLWEHDLKSGSTRKIVSNL----G-VINNARFFPDGRKIAIRVMRGSSL-----NTADLYFYNGENGEIKRITYFSGKS 102 (1045)
T ss_dssp TEEEEEETTTCCEEEEECSS----S-EEEEEEECTTSSEEEEEEEESTTC-----CEEEEEEEETTTTEEEECCCCCEEE
T ss_pred CcEEEEECCCCcEEEeeeCC----C-cccCeEECCCCCEEEEEEeeccCC-----CCCeEEEEECCCCCeEEcccCCCcc
Confidence 37999999988887776421 1 1223333 555555543321100 135799999998876665431100
Q ss_pred CCCc-ccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccC
Q 007468 178 SPRS-GHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (602)
Q Consensus 178 ~~R~-~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~ 227 (602)
.+|. ....+.+ +++|++.+...... .....+|.+++.+.....+...
T Consensus 103 ~~~~~~~~~~~~SpDg~ll~~~~~~~~~---~~~~~l~~~~~~~g~~~~l~~~ 152 (1045)
T 1k32_A 103 TGRRMFTDVAGFDPDGNLIISTDAMQPF---SSMTCLYRVENDGINFVPLNLG 152 (1045)
T ss_dssp ETTEECSEEEEECTTCCEEEEECTTSSS---TTCCEEEEEEGGGTEEEECCSC
T ss_pred cccccccccccCCCCCEEEEEECCcCCC---cccceEEEEECCCCCeEEecCC
Confidence 0111 1133444 56665555433211 1235799999988776655443
No 287
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=63.73 E-value=77 Score=34.42 Aligned_cols=74 Identities=18% Similarity=0.252 Sum_probs=46.4
Q ss_pred EEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCC--cEEEcccCCC-CCCCc---ccEEEEECCEEEEEcCccCCC
Q 007468 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKGC-PSPRS---GHRMVLYKHKIIVFGGFYDTL 202 (602)
Q Consensus 129 s~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~~~~~~~~-p~~R~---~h~~~~~~~~Lyv~GG~~~~~ 202 (602)
+-++.++.|||.... ..++.||..+. .|+.-..... ..+.+ ..+.++.+++||+...
T Consensus 63 ~P~v~~g~vyv~~~~------------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~----- 125 (582)
T 1flg_A 63 QAIVSDGVIYVTASY------------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL----- 125 (582)
T ss_dssp CCEEETTEEEEEETT------------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-----
T ss_pred ccEEECCEEEEEcCC------------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-----
Confidence 345679999998752 23889998877 4876543111 00111 1234567888887532
Q ss_pred CCeeeeceEEEEECCCCc--eEEe
Q 007468 203 REVRYYNDLYVFDLDQFK--WQEI 224 (602)
Q Consensus 203 ~~~~~~~~v~~yd~~t~~--W~~v 224 (602)
-..|+++|..|.+ |+.-
T Consensus 126 -----dg~l~AlD~~TG~~~W~~~ 144 (582)
T 1flg_A 126 -----DASVVALNKNTGKVVWKKK 144 (582)
T ss_dssp -----TTEEEEEESSSCCEEEEEE
T ss_pred -----CCEEEEEECCCCCEEeeec
Confidence 2469999998865 8764
No 288
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=61.34 E-value=1.3e+02 Score=29.82 Aligned_cols=188 Identities=9% Similarity=-0.007 Sum_probs=102.9
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEE--ECCEEEEEeCccCCCCCCcceecCeE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS--WKNYLYIFGGEFTSPNQERFHHYKDF 158 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~--~~~~iyV~GG~~~~~~~~~~~~~~dv 158 (602)
++.||+.-- ..+.|+++++.......+.......| .++++ .++.||+.-.. .+.+
T Consensus 84 ~~~ly~~D~---------~~~~I~r~~~~g~~~~~~~~~~~~~p---~glavd~~~g~ly~~d~~-----------~~~I 140 (349)
T 3v64_C 84 RELVFWSDV---------TLDRILRANLNGSNVEEVVSTGLESP---GGLAVDWVHDKLYWTDSG-----------TSRI 140 (349)
T ss_dssp TTEEEEEET---------TTTEEEEEETTSCSCEEEECSSCSCC---CEEEEETTTTEEEEEETT-----------TTEE
T ss_pred ccEEEEEec---------cCCceEEEecCCCCceEEEeCCCCCc---cEEEEecCCCeEEEEcCC-----------CCeE
Confidence 466776542 12468888888776555433221112 23333 36889987542 2568
Q ss_pred EEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCc
Q 007468 159 WMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR 236 (602)
Q Consensus 159 ~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R 236 (602)
+++++....-..+....+..| .++++. ++.||+.--.. ...|+++++....-+.+... .+..|
T Consensus 141 ~~~~~dG~~~~~l~~~~l~~P---~~iavdp~~g~ly~td~~~--------~~~I~r~~~dG~~~~~~~~~---~~~~P- 205 (349)
T 3v64_C 141 EVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWGN--------TPRIEASSMDGSGRRIIADT---HLFWP- 205 (349)
T ss_dssp EEEETTSCSCEEEECTTCSCE---EEEEEETTTTEEEEEECSS--------SCEEEEEETTSCSCEESCCS---SCSCE-
T ss_pred EEEcCCCCceEEEEeCCCCCc---ceEEEecCcCeEEEeccCC--------CCEEEEEeCCCCCcEEEEEC---CCCCc-
Confidence 889887664443332222222 234444 67888874211 25799999876543333221 01111
Q ss_pred cceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEecc
Q 007468 237 SGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314 (602)
Q Consensus 237 ~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG 314 (602)
.++++. ++.||+.-... ..|+++++....-..+...+ ...-+++++..+.||+.--
T Consensus 206 --nGla~d~~~~~lY~aD~~~----------------~~I~~~~~dG~~~~~~~~~~----~~~P~giav~~~~ly~td~ 263 (349)
T 3v64_C 206 --NGLTIDYAGRRMYWVDAKH----------------HVIERANLDGSHRKAVISQG----LPHPFAITVFEDSLYWTDW 263 (349)
T ss_dssp --EEEEEETTTTEEEEEETTT----------------TEEEEEETTSCSCEEEECSS----CSSEEEEEEETTEEEEEET
T ss_pred --ceEEEeCCCCEEEEEECCC----------------CEEEEEeCCCCceEEEEeCC----CCCceEEEEECCEEEEecC
Confidence 234443 78999975432 34888987654323332211 1123566778899999743
Q ss_pred ccccccccccccccccCeeEEEECCCCc
Q 007468 315 VVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
. .+.|+++|..+.+
T Consensus 264 ~--------------~~~V~~~~~~~G~ 277 (349)
T 3v64_C 264 H--------------TKSINSANKFTGK 277 (349)
T ss_dssp T--------------TTEEEEEETTTCC
T ss_pred C--------------CCeEEEEEccCCC
Confidence 2 3568888865543
No 289
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=60.93 E-value=8.9 Score=36.57 Aligned_cols=62 Identities=13% Similarity=0.288 Sum_probs=38.1
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEccc----CCCCCC------CcccEEEEE--CCEEEEEcCccCC
Q 007468 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL----KGCPSP------RSGHRMVLY--KHKIIVFGGFYDT 201 (602)
Q Consensus 134 ~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~----~~~p~~------R~~h~~~~~--~~~Lyv~GG~~~~ 201 (602)
++++|+|-| +.+|+||..+++-..--+ .+.|.. ..-.+++.+ ++++|+|-|
T Consensus 129 ~~k~yfFkG-------------~~yw~~d~~~~~~~~gyPk~i~~g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg---- 191 (227)
T 3lp9_A 129 GKEVYLFKG-------------DQYARIDYGSNSMVNKEIKSISSGYPCFRNTIFESGADAAFASHKTNEVYFFKD---- 191 (227)
T ss_dssp TTEEEEEET-------------TEEEEEETTTTEESSSSCEEHHHHCGGGTTSGGGGCCSEEEECSSTTEEEEEET----
T ss_pred CCEEEEEEC-------------CEEEEEeCCCccccCCCCeEHHHCCCCccccccCCCccEEEEcCCCceEEEEEC----
Confidence 589999987 458999987664211000 112321 223344443 589999977
Q ss_pred CCCeeeeceEEEEECCCC
Q 007468 202 LREVRYYNDLYVFDLDQF 219 (602)
Q Consensus 202 ~~~~~~~~~v~~yd~~t~ 219 (602)
+..|+||..+.
T Consensus 192 -------~~Ywr~d~~~~ 202 (227)
T 3lp9_A 192 -------DHYARVKVTPX 202 (227)
T ss_dssp -------TEEEEEECCSS
T ss_pred -------CEEEEEECCcc
Confidence 46788988765
No 290
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=59.09 E-value=64 Score=35.41 Aligned_cols=81 Identities=9% Similarity=0.126 Sum_probs=39.8
Q ss_pred EEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcE---EEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCC
Q 007468 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW---KVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQ 149 (602)
Q Consensus 73 s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W---~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~ 149 (602)
+..+.| +++.++|+......-.......++++|+.+++. ..+. ......+..-+++.++++.
T Consensus 64 ~~~~Sp--Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~------~~~~~~~~SPDG~~la~~~------- 128 (719)
T 1z68_A 64 NYGLSP--DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP------RPIQYLCWSPVGSKLAYVY------- 128 (719)
T ss_dssp EEEECT--TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC------SSBCCEEECSSTTCEEEEE-------
T ss_pred eEEECC--CCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC------cccccceECCCCCEEEEEE-------
Confidence 444555 566666655311000001235799999998876 3331 1111111111343333431
Q ss_pred CcceecCeEEEEECCCCcEEEccc
Q 007468 150 ERFHHYKDFWMLDLKTNQWEQLNL 173 (602)
Q Consensus 150 ~~~~~~~dv~~yd~~t~~W~~~~~ 173 (602)
-+.++++++.+..-.++..
T Consensus 129 -----~~~i~~~~~~~g~~~~l~~ 147 (719)
T 1z68_A 129 -----QNNIYLKQRPGDPPFQITF 147 (719)
T ss_dssp -----TTEEEEESSTTSCCEECCC
T ss_pred -----CCeEEEEeCCCCCcEEEec
Confidence 1468888887776665543
No 291
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=59.00 E-value=1.4e+02 Score=29.35 Aligned_cols=16 Identities=13% Similarity=0.169 Sum_probs=11.5
Q ss_pred CcEEEEEcC-CCcEEEe
Q 007468 101 GDLYRYDVE-KQEWKVI 116 (602)
Q Consensus 101 ~dv~~yd~~-~~~W~~l 116 (602)
+.|++|++. +.+...+
T Consensus 167 ~~v~~~~~~~~g~~~~~ 183 (365)
T 1jof_A 167 NKLWTHRKLASGEVELV 183 (365)
T ss_dssp TEEEEEEECTTSCEEEE
T ss_pred CEEEEEEECCCCCEEEe
Confidence 478899988 6766543
No 292
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=58.49 E-value=1.8e+02 Score=32.34 Aligned_cols=98 Identities=10% Similarity=0.100 Sum_probs=54.5
Q ss_pred eCcEEEEEcCCC--cE--EEecCCCCCCCceeeEEE-EECCEEEEEeCccCCCCCCcceecCeEEEEECCC-CcEEE-cc
Q 007468 100 YGDLYRYDVEKQ--EW--KVISSPNSPPPRSAHQAV-SWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT-NQWEQ-LN 172 (602)
Q Consensus 100 ~~dv~~yd~~~~--~W--~~l~~~~~P~~R~~hs~~-~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t-~~W~~-~~ 172 (602)
.+++|++|+.+. .+ +.+.... ..+. ++.. ..++.||+..-.... ....++++++.+ ..|+. +-
T Consensus 294 ~~~l~~~d~~~~~~~~~~~~l~~~~-~~~~--~s~~~~~g~~l~~~t~~~~a-------~~~~L~~~d~~~~~~~~~~li 363 (751)
T 2xe4_A 294 TAEVHLLDLRKGNAHNTLEIVRPRE-KGVR--YDVQMHGTSHLVILTNEGGA-------VNHKLLIAPRGQPSDWSHVLV 363 (751)
T ss_dssp CEEEEEEESSSCTTCCCEEESSCCC-TTCC--EEEEEETTTEEEEEECTTTC-------TTCEEEEEETTSTTCCCCEEE
T ss_pred CceEEEEECCCCCCCceeEEeecCC-CCce--EEEeeeeCCEEEEEeCCCCC-------CCcEEEEEcCCCcccceeeEE
Confidence 468999998875 46 6664321 1111 2222 237888888654311 134789999876 67876 43
Q ss_pred cCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEEC
Q 007468 173 LKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDL 216 (602)
Q Consensus 173 ~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~ 216 (602)
+. .....-......++.||+..-..+ ...++++++
T Consensus 364 ~~--~~~~~l~~~~~~~~~lv~~~~~~g-------~~~l~~~dl 398 (751)
T 2xe4_A 364 DH--SEDVFMESIAVRSNYLVVAGRRAG-------LTRIWTMMA 398 (751)
T ss_dssp CC--CSSEEEEEEEECSSEEEEEEEETT-------EEEEEEEEC
T ss_pred CC--CCCcEEEEEEEECCEEEEEEEeCC-------EEEEEEEec
Confidence 31 111111223334677776654332 467889986
No 293
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=56.65 E-value=2.3e+02 Score=31.13 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=24.2
Q ss_pred EEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecC
Q 007468 75 NINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISS 118 (602)
Q Consensus 75 ~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~ 118 (602)
.+.| +++.++|+......-......++|+||+.+++...+..
T Consensus 68 ~~Sp--dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~ 109 (740)
T 4a5s_A 68 SISP--DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEER 109 (740)
T ss_dssp EECT--TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC
T ss_pred EECC--CCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEccc
Confidence 4455 56655665531111111234788999999998776643
No 294
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=56.07 E-value=1.8e+02 Score=29.63 Aligned_cols=19 Identities=5% Similarity=-0.026 Sum_probs=13.8
Q ss_pred cceeEEEe-CCEEEEEcCcc
Q 007468 237 SGFQFFVY-QDEVFLYGGYS 255 (602)
Q Consensus 237 ~~~~~~~~-~~~Iyv~GG~~ 255 (602)
..|++++. ++.||.+|-..
T Consensus 303 ~~ht~alt~~G~v~~wG~n~ 322 (423)
T 3mvd_K 303 QHHTVILTTDLKCSVVGRPE 322 (423)
T ss_dssp SSEEEEEETTCCEEEEECCG
T ss_pred cCeEEEEeCCCcEEEEECCC
Confidence 45666666 88999999643
No 295
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=54.66 E-value=1.4e+02 Score=27.95 Aligned_cols=59 Identities=22% Similarity=0.505 Sum_probs=34.7
Q ss_pred ECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcE--EEcccC--CCCCCCcccEEEEECCEEEEEcCccCCCCCeeee
Q 007468 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQW--EQLNLK--GCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYY 208 (602)
Q Consensus 133 ~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W--~~~~~~--~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~ 208 (602)
.++.+|+|=|. .+|+|+.....+ ..+... ++|. .--++..+++++|+|=|
T Consensus 27 ~~g~~yfFkg~-------------~~Wr~~~~~~~~~p~~Is~~wpgLP~--~IDAA~~~~~~~yfFkG----------- 80 (219)
T 1hxn_A 27 NHGATYVFSGS-------------HYWRLDTNRDGWHSWPIAHQWPQGPS--TVDAAFSWEDKLYLIQD----------- 80 (219)
T ss_dssp TTSCEEEEETT-------------EEEESSSSSCTTCCEEGGGTCTTSCS--SCSEEEEETTEEEEEET-----------
T ss_pred CCCcEEEEeCC-------------EEEEEcCCCCCCCceEhhhhccCCCC--CccEEEEECCcEEEecC-----------
Confidence 36889999773 467776543221 122211 2342 22345556899999976
Q ss_pred ceEEEEECC
Q 007468 209 NDLYVFDLD 217 (602)
Q Consensus 209 ~~v~~yd~~ 217 (602)
+.+|+|+..
T Consensus 81 ~~yw~~~~~ 89 (219)
T 1hxn_A 81 TKVYVFLTK 89 (219)
T ss_dssp TEEEEEECS
T ss_pred CEEEEEeCC
Confidence 468888864
No 296
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=52.49 E-value=1.1e+02 Score=31.39 Aligned_cols=125 Identities=7% Similarity=-0.052 Sum_probs=64.6
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceE
Q 007468 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (602)
Q Consensus 134 ~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v 211 (602)
++.+||.-..... ..+.++++|+.+++-...- |.+...| +++. +.+||+...+..........+.|
T Consensus 44 ~~~vyV~~~~~~~-------~~~~V~ViD~~t~~v~~~I----~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~V 111 (386)
T 3sjl_D 44 ARRVYVNDPAHFA-------AVTQQFVIDGEAGRVIGMI----DGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYV 111 (386)
T ss_dssp TTEEEEEECGGGC-------SSEEEEEEETTTTEEEEEE----EECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCEEEEEcCcccC-------CCCEEEEEECCCCeEEEEE----ECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEE
Confidence 4678887543211 2357999999988743222 2222235 4443 45788875322110001124679
Q ss_pred EEEECCCCceEEeccCCCCC-CCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeE
Q 007468 212 YVFDLDQFKWQEIKPRFGSM-WPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (602)
Q Consensus 212 ~~yd~~t~~W~~v~~~~~~~-~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (602)
.+||+.+.+-..--..+.+. ......-+.+++. +..+||.... ..+.+.++|+.+.+-.
T Consensus 112 sviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~---------------~~~~VsVID~~t~~vv 173 (386)
T 3sjl_D 112 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS---------------PAPAVGVVDLEGKAFK 173 (386)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS---------------SSCEEEEEETTTTEEE
T ss_pred EEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC---------------CCCeEEEEECCCCcEE
Confidence 99999998743322221100 0011122233433 6678886321 1245889998887543
No 297
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=51.05 E-value=27 Score=33.09 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=16.0
Q ss_pred CCEEEEEcCccCCCCCeeeeceEEEEECCCC
Q 007468 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (602)
Q Consensus 189 ~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~ 219 (602)
++++|+|-| +.+|+||..++
T Consensus 129 ~~k~yfFkG-----------~~yw~~d~~~~ 148 (227)
T 3lp9_A 129 GKEVYLFKG-----------DQYARIDYGSN 148 (227)
T ss_dssp TTEEEEEET-----------TEEEEEETTTT
T ss_pred CCEEEEEEC-----------CEEEEEeCCCc
Confidence 589999987 46899997654
No 298
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=50.34 E-value=2.2e+02 Score=28.90 Aligned_cols=175 Identities=8% Similarity=0.058 Sum_probs=95.4
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCC----cEEEcccC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN----QWEQLNLK 174 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~----~W~~~~~~ 174 (602)
+.|.++++....+..+.. ..+...++++. ++.||+.--. ...++++++... ....+...
T Consensus 92 ~~I~~i~l~~~~~~~~~~----~~~~~~~l~~d~~~~~lywsD~~-----------~~~I~~~~~~g~~~~~~~~~~~~~ 156 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIP----NLRNVVALDTEVASNRIYWSDLS-----------QRMICSTQLDRAHGVSSYDTVISR 156 (400)
T ss_dssp TEEEEECTTSCSCEEEEC----SCSCEEEEEEETTTTEEEEEETT-----------TTEEEEEEC------CCCEEEECS
T ss_pred ceeEEEccCCcceeEecc----ccCcceEEeeeeccCceEEEecC-----------CCeEEEEEcccCCCCCcceEEEeC
Confidence 467788888777776643 23344445444 5889987432 245888888652 22232221
Q ss_pred CCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEE
Q 007468 175 GCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFL 250 (602)
Q Consensus 175 ~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv 250 (602)
++ ..-.++++. ++.||+.-.. ...|+++++....-..+... .+..|+ ++++. ++.||+
T Consensus 157 ~~---~~p~glavD~~~~~lY~~d~~---------~~~I~~~~~~g~~~~~l~~~---~~~~P~---~iavdp~~g~ly~ 218 (400)
T 3p5b_L 157 DI---QAPDGLAVDWIHSNIYWTDSV---------LGTVSVADTKGVKRKTLFRE---NGSKPR---AIVVDPVHGFMYW 218 (400)
T ss_dssp SC---SCEEEEEEETTTTEEEEEETT---------TTEEEEECTTTCSEEEEEEC---SSCCEE---EEEEETTTTEEEE
T ss_pred CC---CCcccEEEEecCCceEEEECC---------CCeEEEEeCCCCceEEEEeC---CCCCcc---eEEEecccCeEEE
Confidence 11 122344443 7899987442 35788999887655544332 112333 34443 788998
Q ss_pred EcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE--CCeEEEecccccccccccccccc
Q 007468 251 YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSL 328 (602)
Q Consensus 251 ~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~--~~~lyv~GG~~~~~~~~~~~~~~ 328 (602)
.-... ...|+++++....=+.+...+ -..-.++++- +++||+.-..
T Consensus 219 td~~~---------------~~~I~~~~~dG~~~~~~~~~~----l~~P~glavd~~~~~lY~aD~~------------- 266 (400)
T 3p5b_L 219 TDWGT---------------PAKIKKGGLNGVDIYSLVTEN----IQWPNGITLDLLSGRLYWVDSK------------- 266 (400)
T ss_dssp EECSS---------------SCCEEEEETTSCSCEEEECSS----CSCEEEEEEETTTTEEEEEETT-------------
T ss_pred EeCCC---------------CCEEEEEeCCCCccEEEEECC----CCceEEEEEEeCCCEEEEEECC-------------
Confidence 64211 124888887654333332211 1122345554 7889987322
Q ss_pred ccCeeEEEECCCC
Q 007468 329 FLNELYGFQLDNH 341 (602)
Q Consensus 329 ~~ndv~~yd~~t~ 341 (602)
.+.|+++|++..
T Consensus 267 -~~~I~~~d~dG~ 278 (400)
T 3p5b_L 267 -LHSISSIDVNGG 278 (400)
T ss_dssp -TTEEEEEETTSC
T ss_pred -CCEEEEEeCCCC
Confidence 467999998653
No 299
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=49.19 E-value=2.1e+02 Score=28.35 Aligned_cols=174 Identities=10% Similarity=0.041 Sum_probs=99.8
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~ 178 (602)
+.++++++.......+... .....+.++. ++.||+.--. ...++++++.....+.+...++..
T Consensus 53 ~~I~~i~~~g~~~~~~~~~----~~~~~~l~~d~~~~~ly~~D~~-----------~~~I~r~~~~g~~~~~~~~~~~~~ 117 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLNN----LENAIALDFHHRRELVFWSDVT-----------LDRILRANLNGSNVEEVVSTGLES 117 (349)
T ss_dssp SCEEEECTTSCCEEEEECS----CSCEEEEEEETTTTEEEEEETT-----------TTEEEEEETTSCSCEEEECSSCSC
T ss_pred cceEEEeCCCCeeEEeecC----CCceEEEEEeccccEEEEEecc-----------CCceEEEecCCCCceEEEeCCCCC
Confidence 4688888888877766432 2223444443 5889987432 256899999887655553322222
Q ss_pred CCcccEEEE--ECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCc
Q 007468 179 PRSGHRMVL--YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGY 254 (602)
Q Consensus 179 ~R~~h~~~~--~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG~ 254 (602)
| .++++ .++.||+.-.. .+.|+++++....-..+... .+..|+ .+++. ++.||+.-..
T Consensus 118 p---~glavd~~~g~ly~~d~~---------~~~I~~~~~dG~~~~~l~~~---~l~~P~---~iavdp~~g~ly~td~~ 179 (349)
T 3v64_C 118 P---GGLAVDWVHDKLYWTDSG---------TSRIEVANLDGAHRKVLLWQ---SLEKPR---AIALHPMEGTIYWTDWG 179 (349)
T ss_dssp C---CEEEEETTTTEEEEEETT---------TTEEEEEETTSCSCEEEECT---TCSCEE---EEEEETTTTEEEEEECS
T ss_pred c---cEEEEecCCCeEEEEcCC---------CCeEEEEcCCCCceEEEEeC---CCCCcc---eEEEecCcCeEEEeccC
Confidence 2 23444 37899987432 35788999876544443322 112332 34444 7889987432
Q ss_pred cCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE--CCeEEEeccccccccccccccccccCe
Q 007468 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNE 332 (602)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~nd 332 (602)
. ...|+++++....-+.+...+ -..-.++++- +++||+.-.. .+.
T Consensus 180 ~---------------~~~I~r~~~dG~~~~~~~~~~----~~~PnGla~d~~~~~lY~aD~~--------------~~~ 226 (349)
T 3v64_C 180 N---------------TPRIEASSMDGSGRRIIADTH----LFWPNGLTIDYAGRRMYWVDAK--------------HHV 226 (349)
T ss_dssp S---------------SCEEEEEETTSCSCEESCCSS----CSCEEEEEEETTTTEEEEEETT--------------TTE
T ss_pred C---------------CCEEEEEeCCCCCcEEEEECC----CCCcceEEEeCCCCEEEEEECC--------------CCE
Confidence 2 134889988755434332211 1122355554 7889987322 356
Q ss_pred eEEEECCC
Q 007468 333 LYGFQLDN 340 (602)
Q Consensus 333 v~~yd~~t 340 (602)
|++|+++.
T Consensus 227 I~~~~~dG 234 (349)
T 3v64_C 227 IERANLDG 234 (349)
T ss_dssp EEEEETTS
T ss_pred EEEEeCCC
Confidence 88998764
No 300
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=48.85 E-value=57 Score=35.95 Aligned_cols=101 Identities=15% Similarity=0.369 Sum_probs=52.3
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCC-cEE--EecC--CCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcce
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ-EWK--VISS--PNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFH 153 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~-~W~--~l~~--~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~ 153 (602)
.+++|+|=|. .+|+|+.... ... .+.. +.+| ..--++... ++++|+|-|
T Consensus 453 rg~~yfFKg~-----------~yWr~~~~~~~~~~P~~Is~~wp~LP--~~IDAA~~~~~~~k~yFFkG----------- 508 (631)
T 1ck7_A 453 RGEIFFFKDR-----------FIWRTVTPRDKPMGPLLVATFWPELP--EKIDAVYEAPQEEKAVFFAG----------- 508 (631)
T ss_dssp SSSEEEECSS-----------EEEEESCTTSCCEEEEEGGGTCTTSC--SSCSBCCEETTTTEEEEEET-----------
T ss_pred CCcEEEEcCC-----------EEEEEcCCCCCCCCceeccccCCCCC--ccceEEEEECCCCEEEEEec-----------
Confidence 6889999883 5677665442 221 1111 1122 211222233 578999976
Q ss_pred ecCeEEEEECCCC--cE-EEcccCCCCCC--CcccEEEE--ECCEEEEEcCccCCCCCeeeeceEEEEECCCC
Q 007468 154 HYKDFWMLDLKTN--QW-EQLNLKGCPSP--RSGHRMVL--YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (602)
Q Consensus 154 ~~~dv~~yd~~t~--~W-~~~~~~~~p~~--R~~h~~~~--~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~ 219 (602)
+.+|+|+..+. -+ ..+...+.|.. +.. ++.. .++++|+|-| +..|+||..+.
T Consensus 509 --~~yWry~~~~l~~GYPk~Is~~G~P~~~~~ID-AAf~~~~~gktYFFkG-----------~~ywryd~~~~ 567 (631)
T 1ck7_A 509 --NEYWIYSASTLERGYPKPLTSLGLPPDVQRVD-AAFNWSKNKKTYIFAG-----------DKFWRYNEVKK 567 (631)
T ss_dssp --TEEEEEETTEECTTCCEEGGGGTCCTTCCCCC-BCCCCTTTCEEEEEET-----------TEEEEEETTTT
T ss_pred --CEEEEECCCccccCCCccchhcCCCCCCCcce-eEEEecCCCeEEEEEC-----------CEEEEEcCCcc
Confidence 35788885210 00 11222122321 122 2222 2689999977 46889997654
No 301
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=48.81 E-value=2.2e+02 Score=28.53 Aligned_cols=76 Identities=5% Similarity=-0.120 Sum_probs=40.4
Q ss_pred CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe-CC--EEEEEcCccCCCCCccCCC
Q 007468 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QD--EVFLYGGYSKEVSTDKNQS 265 (602)
Q Consensus 189 ~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~--~Iyv~GG~~~~~~~~~~~~ 265 (602)
+++|||..............+.|+++|+.+.+- +... |.+...+++++. ++ .+|+..+..
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v--v~~i-----~~g~~p~~i~~s~Dg~~~l~v~~~~~---------- 340 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT--SSQI-----SLGHDVDAISVAQDGGPDLYALSAGT---------- 340 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCCEE--EEEE-----ECCCCcCeEEECCCCCeEEEEEcCCC----------
Confidence 578998754211100011247899999988654 2222 222233444444 33 455543322
Q ss_pred CCCceeeeEEEEeCCCCeeEEe
Q 007468 266 EKGIIHSDLWSLDPRTWEWSKV 287 (602)
Q Consensus 266 ~~~~~~~dv~~yd~~t~~W~~l 287 (602)
+++.+||+.+.+-...
T Consensus 341 ------~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 341 ------EVLHIYDAGAGDQDQS 356 (373)
T ss_pred ------CeEEEEECCCCCEEee
Confidence 3599999887665544
No 302
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=48.66 E-value=2.5e+02 Score=29.25 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=13.5
Q ss_pred cceEEEEecCCCCEEEEEcc
Q 007468 70 SNCSLNINPLKETELILYGG 89 (602)
Q Consensus 70 ~~~s~~~~~~~~~~iyv~GG 89 (602)
..|++++.. +++||.+|-
T Consensus 76 ~~Ht~alt~--~G~v~~wG~ 93 (473)
T 3of7_A 76 GMHTLALDE--ESNVWSWGC 93 (473)
T ss_dssp SSEEEEEET--TCCEEEEEC
T ss_pred CCeEEEEec--CCeEEEeEC
Confidence 467777664 689999995
No 303
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=46.65 E-value=2.3e+02 Score=28.05 Aligned_cols=107 Identities=7% Similarity=0.013 Sum_probs=53.9
Q ss_pred eCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcE-EEcccCCC
Q 007468 100 YGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQW-EQLNLKGC 176 (602)
Q Consensus 100 ~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W-~~~~~~~~ 176 (602)
-+.+++||+.+++-... .|..... .+++. +..+|+..-....... -...+.+.+||+.+.+- ..++....
T Consensus 30 d~~v~v~D~~t~~~~~~----i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~--g~~~~~v~v~d~~t~~~~~~i~~~~~ 102 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGM----VPTAFNG-HVQVSNDGKKIYTMTTYHERITR--GKRSDVVEVWDADKLTFEKEISLPPK 102 (361)
T ss_dssp GCEEEEEETTTCCEEEE----EECCEEE-EEEECTTSSEEEEEEEEETTSSS--SCEEEEEEEEETTTCCEEEEEEECTT
T ss_pred cCeEEEEECCCCeEEEE----ecCCCCC-ceEECCCCCEEEEEEeccccccc--CCCCCEEEEEECcCCcEEEEEEcCcc
Confidence 35789999988875432 2222222 22232 4678887532111000 01235688999987653 33322100
Q ss_pred -C-CCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCce
Q 007468 177 -P-SPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (602)
Q Consensus 177 -p-~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W 221 (602)
. ....-+.+++. +++||+.... ..+.|.+||+.+.+-
T Consensus 103 ~~~~g~~p~~i~~spdg~~l~v~n~~--------~~~~v~v~d~~~~~~ 143 (361)
T 2oiz_A 103 RVQGLNYDGLFRQTTDGKFIVLQNAS--------PATSIGIVDVAKGDY 143 (361)
T ss_dssp BCCBCCCGGGEEECTTSSEEEEEEES--------SSEEEEEEETTTTEE
T ss_pred ccccCCCcceEEECCCCCEEEEECCC--------CCCeEEEEECCCCcE
Confidence 0 01122333332 5578876321 136789999988743
No 304
>1ofz_A Fucose-specific lectin; sugar-binding protein, AAL, aleuria aurantia lectin; HET: FUL FUC; 1.5A {Aleuria aurantia} SCOP: b.68.8.1 PDB: 1iuc_A* 1iub_A*
Probab=46.01 E-value=2.3e+02 Score=28.00 Aligned_cols=125 Identities=14% Similarity=0.199 Sum_probs=66.4
Q ss_pred EEEEcCCCcEEEec--CCC-CCCCceeeEEEEEC------CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccC
Q 007468 104 YRYDVEKQEWKVIS--SPN-SPPPRSAHQAVSWK------NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK 174 (602)
Q Consensus 104 ~~yd~~~~~W~~l~--~~~-~P~~R~~hs~~~~~------~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~ 174 (602)
.+|+. ..|..-. ... .+.+.+..+++.++ .+|.||.=..... -+.++.+-.... |..-...
T Consensus 90 ~~~~~--~~W~~g~L~~~~~~~~~~S~lAAvs~~~~~~~~~~i~Vf~q~~~~~-------dn~I~e~~~~g~-W~~~~~l 159 (312)
T 1ofz_A 90 FVYDG--SKWITGQLGSVGVKVGSNSKLAALQWGGSESAPPNIRVYYQKSNLS-------GSSIHEYVWSGK-WTAGASF 159 (312)
T ss_dssp EEEES--SCEEECGGGGGCCBCCTTCCCEEEEESCBTTBCCEEEEEECSCCST-------TEEEEEEEESSS-EEEEEEE
T ss_pred EEecC--CCccccccCCcccccCCCCcceEEEecCCCCCCCeEEEEEEeccCC-------CCeEEEEEccCC-cccCCCc
Confidence 35675 6798744 211 23456777777775 3777773210000 123433322334 9776653
Q ss_pred CCCCCCcccEEEEEC-CEEEEEcCccCCCCCeeeeceEE--EEECCCCceEEeccCCCCCCCCCccceeEEEe-CC-EEE
Q 007468 175 GCPSPRSGHRMVLYK-HKIIVFGGFYDTLREVRYYNDLY--VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QD-EVF 249 (602)
Q Consensus 175 ~~p~~R~~h~~~~~~-~~Lyv~GG~~~~~~~~~~~~~v~--~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~-~Iy 249 (602)
+...++++.+++.+. ++|-||--... +.|+ +||. ..|........ ..|+...+++.. ++ +|-
T Consensus 160 g~~~~gT~laa~s~~~~~i~vf~q~~d--------n~i~~~~~d~--~~W~~~~~~~~---~~p~s~lAavs~~~~~~i~ 226 (312)
T 1ofz_A 160 GSTAPGTGIGATAIGPGRLRIYYQATD--------NKIREHCWDS--NSWYVGGFSAS---ASAGVSIAAISWGSTPNIR 226 (312)
T ss_dssp EEESTTCCEEEEEEETTEEEEEEEBTT--------SEEEEEEESS--SCEEEEEEEEE---CCTTCEEEEEEETTTTEEE
T ss_pred CCccCCCCcceeecCCCCEEEEEEcCC--------CcEEEEEecC--CcceECCEecC---cCCCCCcEEEEeCCCCEEE
Confidence 335667777777774 77777743221 3443 4444 56876554311 356666666666 34 555
Q ss_pred EE
Q 007468 250 LY 251 (602)
Q Consensus 250 v~ 251 (602)
||
T Consensus 227 lf 228 (312)
T 1ofz_A 227 VY 228 (312)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 305
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=45.95 E-value=7.4 Score=36.65 Aligned_cols=11 Identities=27% Similarity=0.806 Sum_probs=7.6
Q ss_pred hhhhccCCCCC
Q 007468 506 EWVEASEGEDE 516 (602)
Q Consensus 506 ~w~~~~~~~~~ 516 (602)
+||.+.++|++
T Consensus 149 ~WL~EAEEEs~ 159 (208)
T 2iu1_A 149 KWLKEAEEESS 159 (208)
T ss_dssp HHHHCSSCCCC
T ss_pred HHHHccccccc
Confidence 49998776443
No 306
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=45.62 E-value=3.2e+02 Score=29.53 Aligned_cols=112 Identities=8% Similarity=0.030 Sum_probs=52.3
Q ss_pred CcEEEEEcCCCc---EEEecCCC-CCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEE----CCCCcEEE
Q 007468 101 GDLYRYDVEKQE---WKVISSPN-SPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLD----LKTNQWEQ 170 (602)
Q Consensus 101 ~dv~~yd~~~~~---W~~l~~~~-~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd----~~t~~W~~ 170 (602)
..++++|+.+.. |..+..+. +.........+.+ ++++++.... ... ....+|++| +.+.++..
T Consensus 224 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~-~~~------~~~~l~~~d~~~~~~~g~~~~ 296 (719)
T 1z68_A 224 VRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLK-RVQ------NVSVLSICDFREDWQTWDCPK 296 (719)
T ss_dssp EEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEE-SST------TEEEEEEEEECSSSSSEECCG
T ss_pred eEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEec-ccc------CeEEEEEEcccCCCCCCceEE
Confidence 378889988765 23432210 0001111223333 5665555221 111 135789999 77776655
Q ss_pred ccc---CCCCCCCcc---cEEEEE--CC-EEEEEcCccCCCCCeeeeceEEEEECCCCceEEecc
Q 007468 171 LNL---KGCPSPRSG---HRMVLY--KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (602)
Q Consensus 171 ~~~---~~~p~~R~~---h~~~~~--~~-~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~ 226 (602)
+.. .+ ...... +..+.+ ++ .|++....... ...++.+|+.+.....+..
T Consensus 297 ~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g------~~~l~~~~~~~~~~~~lt~ 354 (719)
T 1z68_A 297 TQEHIEES-RTGWAGGFFVSTPVFSYDAISYYKIFSDKDG------YKHIHYIKDTVENAIQITS 354 (719)
T ss_dssp GGEEEEEC-SSSCSSSSSCCCCEECTTSSCEEEEEECTTS------CEEEEEESSCSTTCEECSC
T ss_pred EEeccccc-CCceEccccCCccEECCCCCeEEEEEEccCC------ceEEEEEECCCCceEeccc
Confidence 441 11 111111 112222 34 45543222111 3579999998877666543
No 307
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=44.93 E-value=2.6e+02 Score=28.29 Aligned_cols=18 Identities=17% Similarity=0.477 Sum_probs=13.2
Q ss_pred ceeEEEEE-CCeEEEeccc
Q 007468 298 AGFSMCVH-KKRALLFGGV 315 (602)
Q Consensus 298 ~~~s~~~~-~~~lyv~GG~ 315 (602)
..|++++. ++.+|.+|-.
T Consensus 295 ~~hs~al~~~G~v~~wG~n 313 (413)
T 1a12_A 295 QHHTVCMDSEGKAYSLGRA 313 (413)
T ss_dssp SSEEEEEETTSCEEEEECC
T ss_pred cceEEEEeCCCCEEEeeCC
Confidence 45777766 6889999853
No 308
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=41.82 E-value=2.9e+02 Score=27.96 Aligned_cols=18 Identities=6% Similarity=0.132 Sum_probs=13.4
Q ss_pred ceeEEEEE-CCeEEEeccc
Q 007468 298 AGFSMCVH-KKRALLFGGV 315 (602)
Q Consensus 298 ~~~s~~~~-~~~lyv~GG~ 315 (602)
..|++++. ++.+|.+|-.
T Consensus 303 ~~ht~alt~~G~v~~wG~n 321 (423)
T 3mvd_K 303 QHHTVILTTDLKCSVVGRP 321 (423)
T ss_dssp SSEEEEEETTCCEEEEECC
T ss_pred cCeEEEEeCCCcEEEEECC
Confidence 46777776 7889999853
No 309
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=41.58 E-value=1.4e+02 Score=33.20 Aligned_cols=140 Identities=14% Similarity=0.097 Sum_probs=72.4
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEE--ECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS--WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~--~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~ 178 (602)
+.|+++++....-..+....+..|+ .+++ .++.||+.--. ....|+++++....-..+....+
T Consensus 475 ~~I~v~d~dg~~~~~l~~~~~~~P~---giavDp~~g~ly~td~~----------~~~~I~~~~~dG~~~~~l~~~~l-- 539 (699)
T 1n7d_A 475 GTVSVADTKGVKRKTLFREQGSKPR---AIVVDPVHGFMYWTDWG----------TPAKIKKGGLNGVDIYSLVTENI-- 539 (699)
T ss_dssp SCEEEEBSSSCCEEEECCCSSCCCC---CEECCSSSSCCEECCCS----------SSCCEEBCCSSSCCCCEESCSSC--
T ss_pred CeEEEEecCCCceEEEEeCCCCCcc---eEEEccCCCcEEEcccC----------CCCeEEEEeCCCCCeeEEEeCCC--
Confidence 4577777776655544332211222 2233 25677765311 01457777765443322222111
Q ss_pred CCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccC
Q 007468 179 PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSK 256 (602)
Q Consensus 179 ~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~ 256 (602)
..-.++++- +++||+.-.. .+.|++|++....-+.+.... ..++ ..+++++..+.||+.-....
T Consensus 540 -~~PnGlavd~~~~~LY~aD~~---------~~~I~~~d~dG~~~~~~~~~~-~~~~---~P~glavd~~~lywtd~~~~ 605 (699)
T 1n7d_A 540 -QWPNGITLDLLSGRLYWVDSK---------LHSISSIDVNGGNRKTILEDE-KRLA---HPFSLAVFEDKVFWTDIINE 605 (699)
T ss_dssp -SSCCCEEECTTTCCEEEEETT---------TTEEEEECSSSSCCEEECCCS-SSCS---SCCCCEEETTEEEEECSTTT
T ss_pred -CCccEEEEeccCCEEEEEecC---------CCeEEEEccCCCceEEEEecC-CcCC---CceEeEEECCEEEEEeCCCC
Confidence 111234443 5789986432 467899998764444443221 1112 23456677889999875443
Q ss_pred CCCCccCCCCCCceeeeEEEEeCCCCeeE
Q 007468 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (602)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (602)
. |+++++.+.+-.
T Consensus 606 ~----------------V~~~d~~~G~~~ 618 (699)
T 1n7d_A 606 A----------------IFSANRLTGSDV 618 (699)
T ss_dssp C----------------EEEEETTTEEEE
T ss_pred e----------------EEEEEccCCCce
Confidence 3 888887665433
No 310
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=39.86 E-value=4.4e+02 Score=29.46 Aligned_cols=185 Identities=15% Similarity=0.320 Sum_probs=89.1
Q ss_pred CcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCC----CCCc-eeeEEEEE---CCEEEEE
Q 007468 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNS----PPPR-SAHQAVSW---KNYLYIF 140 (602)
Q Consensus 69 R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~----P~~R-~~hs~~~~---~~~iyV~ 140 (602)
+.-+++++.|...+.||+..|.... . ....||+=.=.-.+|+.+..+.. .+.| ..+.+++. .+.+|+
T Consensus 64 ~~i~~ia~dp~~~~~i~~~~g~~~~-~---~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~- 138 (789)
T 1sqj_A 64 MGTESIALDPNNPDRLYLAQGRYVG-D---EWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWM- 138 (789)
T ss_dssp CSEEEEEEETTEEEEEEEEECSCTT-S---SCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEE-
T ss_pred CceeEEEECCCCCCEEEEEeCccCC-C---cccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEE-
Confidence 3455566665333578887663110 0 01345544444568998864211 0123 23445444 245666
Q ss_pred eCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCC---CCCcccEEEEE----CCEEEEEcCccCCCCCeeeeceEEE
Q 007468 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP---SPRSGHRMVLY----KHKIIVFGGFYDTLREVRYYNDLYV 213 (602)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p---~~R~~h~~~~~----~~~Lyv~GG~~~~~~~~~~~~~v~~ 213 (602)
|... ..+|+=.=.-.+|+.+.. .| ..-.+...+.+ .+.||+..... ..|++
T Consensus 139 g~~~-----------~gl~~S~DgG~TW~~~~~--~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~---------~~v~~ 196 (789)
T 1sqj_A 139 GTRT-----------EGIWKSSDRAKTWTNVTS--IPDAFTNGIGYTSVIFDPERNGTIYASATAP---------QGMYV 196 (789)
T ss_dssp ECSS-----------SCEEEESSTTSSCEEETT--SCCCCSTTTCEEEEEECTTSTTCEEEEESST---------TCEEE
T ss_pred Eecc-----------CCEEEECCCCcccCCCcc--CccccCCCCCeEEEEECCCCCCEEEEEEcCC---------CeEEE
Confidence 3321 234443334568998865 22 11122333333 24677654310 22332
Q ss_pred EECC-CCceEEeccCCCCC-------CC----CCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeC
Q 007468 214 FDLD-QFKWQEIKPRFGSM-------WP----SPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDP 279 (602)
Q Consensus 214 yd~~-t~~W~~v~~~~~~~-------~P----~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~ 279 (602)
..+ -.+|+.+...+.+. +| ...+.|.+++. .+.||+..+.....+ ......||+.+-
T Consensus 197 -S~DgG~TW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~p~--------~g~~g~l~~S~D 267 (789)
T 1sqj_A 197 -THDGGVSWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPGPW--------GVTFGEVWRQNR 267 (789)
T ss_dssp -ESSTTSSCEECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCSSS--------CCCCCCEEEEET
T ss_pred -EcCCCcCcccCCCCcCccccccccccCcccccccccceeEEcCCCCeEEEEEecCCCCC--------CCCCceEEEEeC
Confidence 222 35799987543221 11 11112444443 788998743211100 012334888888
Q ss_pred CCCeeEEeec
Q 007468 280 RTWEWSKVKK 289 (602)
Q Consensus 280 ~t~~W~~l~~ 289 (602)
...+|+.+..
T Consensus 268 gG~tW~~~~~ 277 (789)
T 1sqj_A 268 TSGAWDDITP 277 (789)
T ss_dssp TTCCEEECCC
T ss_pred CCCceEECcC
Confidence 8889999875
No 311
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=39.53 E-value=4.9e+02 Score=30.52 Aligned_cols=159 Identities=13% Similarity=0.080 Sum_probs=82.6
Q ss_pred CcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCC---CCCCCceeeEEEEE---CCEEEEEeC
Q 007468 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSP---NSPPPRSAHQAVSW---KNYLYIFGG 142 (602)
Q Consensus 69 R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~---~~P~~R~~hs~~~~---~~~iyV~GG 142 (602)
-.++++... .+.+ |+|.-.. ......++.|......|-.-... .......++++++. +...||+|-
T Consensus 334 q~GfSa~~t---~d~~-~~GapG~----~~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sylGySVa~~~~~g~~~~v~GA 405 (1095)
T 3k6s_A 334 QEGFSAVFT---PDGP-VLGAVGS----FTWSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWKGVQSLVLGA 405 (1095)
T ss_dssp CTTSSEECC---TTCC-EEEESCS----TTTTBEEEECCSSSCCEEECCCSSCCCCCSCCBTSSEECCCCSSSCEEEEEE
T ss_pred cccccceec---CCcc-eEccccc----CCccceeEEecCCCcceeeccccccccccccccceeeEEeccCCceEEEEEc
Confidence 356666665 3344 7775311 11234577787765554322211 11223345666543 234567763
Q ss_pred ccCCCCCCcceecCeEEEEECCCCcEEEccc-CCC-CCCCcccEEEEEC------CEEEEEcCccCCCCCeeeeceEEEE
Q 007468 143 EFTSPNQERFHHYKDFWMLDLKTNQWEQLNL-KGC-PSPRSGHRMVLYK------HKIIVFGGFYDTLREVRYYNDLYVF 214 (602)
Q Consensus 143 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~-~~~-p~~R~~h~~~~~~------~~Lyv~GG~~~~~~~~~~~~~v~~y 214 (602)
-. ......+++|......|..... .+. .....++++++.+ .-||++|.-..... .....+|+|
T Consensus 406 P~-------~~~~G~V~i~~~~~~~~~~~~~~~g~~~gs~fG~sva~~DvngDG~~DllvvGAP~~~~~--~~~G~Vyvy 476 (1095)
T 3k6s_A 406 PR-------YQHTGKAVIFTQVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQ--TRGGQVSVC 476 (1095)
T ss_dssp TT-------GGGTCEEEEEECCTTTCCEEEEECCSSTTSCTTSCEEEECSSSSSSCCEEEEECSSCCSS--CCCBCEEEE
T ss_pred cc-------ccccceEEEEEecCCcceEEeecccCcccCcCCceEEEEEeCCCCCccEEEECCccccCc--CCCCEEEEE
Confidence 21 1235678999888778876542 112 3456677777642 24777774322110 123568888
Q ss_pred ECCC--CceEEeccCCCCC-CCCCccceeEEEe
Q 007468 215 DLDQ--FKWQEIKPRFGSM-WPSPRSGFQFFVY 244 (602)
Q Consensus 215 d~~t--~~W~~v~~~~~~~-~P~~R~~~~~~~~ 244 (602)
.... ..|.......+.. .+..|+|++++.+
T Consensus 477 ~~~~~~~~~~~~~~l~g~~~~~~~~FG~sva~~ 509 (1095)
T 3k6s_A 477 PLPRGWRRWWCDAVLYGEQGHPWGRFGAALTVL 509 (1095)
T ss_dssp ECCSSTTCCCSCSSCCCCCSCSSCCBTSCEEEE
T ss_pred EeCCCCcceeeeEEeecccCCccccCccceEee
Confidence 5543 4587543332111 1457888888875
No 312
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=37.99 E-value=4.3e+02 Score=28.73 Aligned_cols=181 Identities=9% Similarity=0.007 Sum_probs=102.5
Q ss_pred CcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEE--ECCEEEEEeCccCC
Q 007468 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS--WKNYLYIFGGEFTS 146 (602)
Q Consensus 69 R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~--~~~~iyV~GG~~~~ 146 (602)
+...++.+.+. ++.||+.-- ..+.|+++++.......+..... ..-.++++ .++.||+.-..
T Consensus 37 ~~~~~l~~d~~-~~~lywtD~---------~~~~I~r~~~~g~~~~~v~~~g~---~~P~GlAvD~~~~~LY~tD~~--- 100 (628)
T 4a0p_A 37 KEASALDFDVT-DNRIYWTDI---------SLKTISRAFMNGSALEHVVEFGL---DYPEGMAVDWLGKNLYWADTG--- 100 (628)
T ss_dssp SCEEEEEEETT-TTEEEEEET---------TTTEEEEEETTSCSCEEEECSSC---SCCCEEEEETTTTEEEEEETT---
T ss_pred CceEEEEEECC-CCEEEEEEC---------CCCeEEEEECCCCCcEEEEeCCC---CCcceEEEEeCCCEEEEEECC---
Confidence 34455555543 578888754 12478889988766665543221 11223444 36899997432
Q ss_pred CCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEc-CccCCCCCeeeeceEEEEECCCCceEE
Q 007468 147 PNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFG-GFYDTLREVRYYNDLYVFDLDQFKWQE 223 (602)
Q Consensus 147 ~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~G-G~~~~~~~~~~~~~v~~yd~~t~~W~~ 223 (602)
.+.++++++....=+.+....+..| .+.++. ++.||+.- |. ...|+++++....-+.
T Consensus 101 --------~~~I~v~~~dG~~~~~l~~~~l~~P---~~iavdp~~G~lY~tD~g~---------~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 101 --------TNRIEVSKLDGQHRQVLVWKDLDSP---RALALDPAEGFMYWTEWGG---------KPKIDRAAMDGSERTT 160 (628)
T ss_dssp --------TTEEEEEETTSTTCEEEECSSCCCE---EEEEEETTTTEEEEEECSS---------SCEEEEEETTSCSCEE
T ss_pred --------CCEEEEEecCCCcEEEEEeCCCCCc---ccEEEccCCCeEEEeCCCC---------CCEEEEEeCCCCceEE
Confidence 3568899987654333322223333 244444 67899863 21 3578999987665555
Q ss_pred eccCCCCCCCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeE
Q 007468 224 IKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFS 301 (602)
Q Consensus 224 v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s 301 (602)
+... +..| .++++- +++||+.=... +.|+++++....=+.+... .+ .-++
T Consensus 161 l~~~----~~~P---~GlalD~~~~~LY~aD~~~----------------~~I~~~d~dG~~~~v~~~~--l~---~P~g 212 (628)
T 4a0p_A 161 LVPN----VGRA---NGLTIDYAKRRLYWTDLDT----------------NLIESSNMLGLNREVIADD--LP---HPFG 212 (628)
T ss_dssp EECS----CSSE---EEEEEETTTTEEEEEETTT----------------TEEEEEETTSCSCEEEEEC--CS---CEEE
T ss_pred EECC----CCCc---ceEEEccccCEEEEEECCC----------------CEEEEEcCCCCceEEeecc--CC---CceE
Confidence 4322 1222 123333 68999975433 3488888765322333321 12 2357
Q ss_pred EEEECCeEEEec
Q 007468 302 MCVHKKRALLFG 313 (602)
Q Consensus 302 ~~~~~~~lyv~G 313 (602)
+++.+++||+.-
T Consensus 213 lav~~~~ly~tD 224 (628)
T 4a0p_A 213 LTQYQDYIYWTD 224 (628)
T ss_dssp EEEETTEEEEEE
T ss_pred EEEECCEEEEec
Confidence 777888998864
No 313
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=37.56 E-value=3.5e+02 Score=27.57 Aligned_cols=74 Identities=15% Similarity=0.024 Sum_probs=43.9
Q ss_pred CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CC--eEEEeccccccccc
Q 007468 245 QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KK--RALLFGGVVDMEMK 321 (602)
Q Consensus 245 ~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~--~lyv~GG~~~~~~~ 321 (602)
.+++||.-+.... ......-+.|+++|+.+.+-..--+. +..-+++++- ++ +||+.-+.
T Consensus 291 ~~~lyV~~~~~~~-------~~hk~~~~~V~viD~~t~kv~~~i~v-----g~~~~~lavs~D~~~~ly~tn~~------ 352 (386)
T 3sjl_D 291 LDRIYLLVDQRDE-------WRHKTASRFVVVLDAKTGERLAKFEM-----GHEIDSINVSQDEKPLLYALSTG------ 352 (386)
T ss_dssp TTEEEEEEEECCT-------TCTTSCEEEEEEEETTTCCEEEEEEE-----EEEECEEEECSSSSCEEEEEETT------
T ss_pred CCeEEEEeccccc-------cccCCCCCEEEEEECCCCeEEEEEEC-----CCCcceEEECCCCCeEEEEEcCC------
Confidence 7899997332111 00113457899999998876554332 2233355554 43 46664332
Q ss_pred cccccccccCeeEEEECCCCceE
Q 007468 322 GDVIMSLFLNELYGFQLDNHRWY 344 (602)
Q Consensus 322 ~~~~~~~~~ndv~~yd~~t~~W~ 344 (602)
.++|.+||..+.+-.
T Consensus 353 --------~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 353 --------DKTLYIHDAESGEEL 367 (386)
T ss_dssp --------TTEEEEEETTTCCEE
T ss_pred --------CCeEEEEECCCCcEE
Confidence 367999999988644
No 314
>1ofz_A Fucose-specific lectin; sugar-binding protein, AAL, aleuria aurantia lectin; HET: FUL FUC; 1.5A {Aleuria aurantia} SCOP: b.68.8.1 PDB: 1iuc_A* 1iub_A*
Probab=37.06 E-value=3.2e+02 Score=26.99 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=62.9
Q ss_pred EEEcCCCcEEEecCCCCCCCceeeEEEEEC-CEEEEEeCccCCCCCCcceecCeEE--EEECCCCcEEEcccCCCCCCCc
Q 007468 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSWK-NYLYIFGGEFTSPNQERFHHYKDFW--MLDLKTNQWEQLNLKGCPSPRS 181 (602)
Q Consensus 105 ~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~-~~iyV~GG~~~~~~~~~~~~~~dv~--~yd~~t~~W~~~~~~~~p~~R~ 181 (602)
+|+. . |..-.....+.++...+++... +.|-||--.. -+.++ +||. ..|..........+++
T Consensus 148 ~~~g--~-W~~~~~lg~~~~gT~laa~s~~~~~i~vf~q~~----------dn~i~~~~~d~--~~W~~~~~~~~~~p~s 212 (312)
T 1ofz_A 148 VWSG--K-WTAGASFGSTAPGTGIGATAIGPGRLRIYYQAT----------DNKIREHCWDS--NSWYVGGFSASASAGV 212 (312)
T ss_dssp EESS--S-EEEEEEEEEESTTCCEEEEEEETTEEEEEEEBT----------TSEEEEEEESS--SCEEEEEEEEECCTTC
T ss_pred EccC--C-cccCCCcCCccCCCCcceeecCCCCEEEEEEcC----------CCcEEEEEecC--CcceECCEecCcCCCC
Confidence 4553 4 8865543234567777777774 7777774321 13343 4444 5687654422255777
Q ss_pred ccEEEEEC-C-EEEEEcCccCCCCCeeeeceEEEEECCCCceE---EeccCCCCCCCCCccceeEEEeCC-EEEEE
Q 007468 182 GHRMVLYK-H-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ---EIKPRFGSMWPSPRSGFQFFVYQD-EVFLY 251 (602)
Q Consensus 182 ~h~~~~~~-~-~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~---~v~~~~~~~~P~~R~~~~~~~~~~-~Iyv~ 251 (602)
..+++.++ + +|-||---. .+.|+.+-.. ..|+ .+.....-....+++..+++..++ .|.||
T Consensus 213 ~lAavs~~~~~~i~lf~~~~--------~n~i~~~~~~-~~W~~~~~~~d~~~~~~~~~~s~~aa~s~~~~~i~lf 279 (312)
T 1ofz_A 213 SIAAISWGSTPNIRVYWQKG--------REELYEAAYG-GSWNTPGQIKDASRPTPSLPDTFIAANSSGNIDISVF 279 (312)
T ss_dssp EEEEEEETTTTEEEEEEECT--------TSCEEEEEES-SSBCCCEEECCTTSCSCBCTTCCCEEEEETTTEEEEE
T ss_pred CcEEEEeCCCCEEEEEEECC--------CCcEEEEEec-CCccccccccCcccccCcCCCCceEEEecCCCeEEEE
Confidence 77778774 3 655553211 1344444333 4587 432221011134556665665543 54444
No 315
>1hyw_A GPW, head-TO-tail joining protein W; novel fold, two helices, one two-stranded beta-sheet, viral protein; NMR {Enterobacteria phage lambda} SCOP: d.186.1.1 PDB: 2l6q_A 2l6r_A
Probab=36.28 E-value=22 Score=26.96 Aligned_cols=27 Identities=15% Similarity=0.374 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCCCCC
Q 007468 574 RRKEKRARIEQIRANLGLSDSQRTPME 600 (602)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (602)
.-..|++.|.+|+.+||..-..|.|+.
T Consensus 39 si~~L~~~I~~le~~Lg~~~~rrrp~r 65 (68)
T 1hyw_A 39 SVSDLKKYIAELEVQTGMTQRRRGPAG 65 (68)
T ss_dssp THHHHHHHHHHHHHHTTTTC-------
T ss_pred CHHHHHHHHHHHHHHhcccCCCCCCce
Confidence 467899999999999999988887863
No 316
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=35.58 E-value=5e+02 Score=28.85 Aligned_cols=185 Identities=15% Similarity=0.257 Sum_probs=89.9
Q ss_pred ceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCC-CC---CCce-eeEEEEE---CCEEEEEeC
Q 007468 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN-SP---PPRS-AHQAVSW---KNYLYIFGG 142 (602)
Q Consensus 71 ~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~-~P---~~R~-~hs~~~~---~~~iyV~GG 142 (602)
-+++++.|...+.||+..|.+... .....||+=.=.-.+|+.+..+. .+ ..|. .+.+++. .+.+|+.+-
T Consensus 77 ~~~ia~dp~~~~~~~~~~g~~~~~---~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~ 153 (763)
T 3a0f_A 77 TESIALDPHNPDRLYLAQGDYVQW---DPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSR 153 (763)
T ss_dssp EEEEECCTTCTTCEEEEECSCTTT---CSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECS
T ss_pred eeEEEECCCCCCEEEEEecccccC---CCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeC
Confidence 355555554457888876642211 11234444333456899886421 00 1232 2344443 366777541
Q ss_pred ccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCC---cccEEEEE----CCEEEEEcCccCCCCCeeeeceEEEEE
Q 007468 143 EFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR---SGHRMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFD 215 (602)
Q Consensus 143 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R---~~h~~~~~----~~~Lyv~GG~~~~~~~~~~~~~v~~yd 215 (602)
. ..+|+=.=.-.+|+.+.. +|..+ .+...+.+ .+.||+...... .+++=.
T Consensus 154 ~------------~~l~~S~DgG~TW~~~~~--~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~g---------~v~~S~ 210 (763)
T 3a0f_A 154 T------------QGLWRSTDRAQTWSRMNQ--LPDSSTYGIGIISVIFDPKNVGTAYVASHAVG---------GLWVTW 210 (763)
T ss_dssp S------------SCEEEESSTTSSCEECTT--SCCCSCTTTCEEEEEECSSSTTCEEEEESSTT---------CEEEES
T ss_pred C------------CcEEEECCCCcCcccccc--CcccCCCccceEEEEECCCCCCEEEEEEeCCC---------eEEEEC
Confidence 1 224433333468999874 44322 22223333 246776543110 233222
Q ss_pred CCCCceEEeccCCCCC--------------C-CCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeC
Q 007468 216 LDQFKWQEIKPRFGSM--------------W-PSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDP 279 (602)
Q Consensus 216 ~~t~~W~~v~~~~~~~--------------~-P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~ 279 (602)
=.-.+|+.+...+... . ..++..+.+++. .+.||+........ .+.....+|+.+-
T Consensus 211 DgG~tW~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~--------~~~~~g~v~rS~D 282 (763)
T 3a0f_A 211 DGGANWSQVGGQPTQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGRLYITYSDAPGP--------WGVLYGEVWSYDP 282 (763)
T ss_dssp SSSSSCEECTTCCCSCCHHHHHHHHHHCCCCSSSSCEEEEEEECTTSCEEEEEESSCSS--------SCCCCEEEEEEET
T ss_pred CCCCCccccCCCccccccccccccccccccccCCCCcceeEEECCCCcEEEEeccCCCC--------CCCcceeEEEEeC
Confidence 2235799987542110 0 023444444443 67888874221110 0112356889988
Q ss_pred CCCeeEEeec
Q 007468 280 RTWEWSKVKK 289 (602)
Q Consensus 280 ~t~~W~~l~~ 289 (602)
...+|+.+.+
T Consensus 283 ~G~tW~~~~~ 292 (763)
T 3a0f_A 283 TNGNWKHITP 292 (763)
T ss_dssp TTTEEEECCT
T ss_pred CCCceEECCC
Confidence 8999999864
No 317
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae}
Probab=33.85 E-value=8.7 Score=43.01 Aligned_cols=14 Identities=14% Similarity=0.192 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHH
Q 007468 575 RKEKRARIEQIRAN 588 (602)
Q Consensus 575 ~~~~~~~~~~~~~~ 588 (602)
++-++....|+.++
T Consensus 753 ~~~Veekv~~~i~~ 766 (956)
T 4aco_A 753 DKILEEKVTRIIEQ 766 (956)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 33444445555443
No 318
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=33.04 E-value=1.1e+02 Score=30.92 Aligned_cols=106 Identities=13% Similarity=0.050 Sum_probs=50.9
Q ss_pred CeEEEEECCCC--cEEEccc--CCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCC
Q 007468 156 KDFWMLDLKTN--QWEQLNL--KGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM 231 (602)
Q Consensus 156 ~dv~~yd~~t~--~W~~~~~--~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~ 231 (602)
..++.+|..++ .|+.-.. .++-..+.. + ...++.+|++..+. -..++.|+..+..|..-...+.-.
T Consensus 20 G~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~-~-~~~~~~~~vv~p~~--------dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 20 GGLHAVDRRNGHIIWSIEPENFQPLIEIQEP-S-RLETYETLIIEPFG--------DGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp SCEEEEETTTTEEEEEECGGGSCCSEECCCS-C-TTTSSEEEEECCST--------TTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CeEEEEECCCCcEEEEecCCccCCcEEecCC-c-cccCCcEEEEEECC--------CCEEEEEECCCCcEEeeeccccce
Confidence 35788888776 5875433 111001111 0 01245666665322 246888888877654322221000
Q ss_pred CCCCccceeEEEe-------CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCe--eEEe
Q 007468 232 WPSPRSGFQFFVY-------QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE--WSKV 287 (602)
Q Consensus 232 ~P~~R~~~~~~~~-------~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--W~~l 287 (602)
.-.|..+.+..++ .+..+++|+..+. ++.+|+.+.+ |+.-
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~----------------l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTI----------------MYTINMLNGEIISAFG 138 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEE----------------EEEEETTTCCEEEEES
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCE----------------EEEEECCCCcEEEEEe
Confidence 0112221222222 4555666766655 8899987764 6653
No 319
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=32.18 E-value=46 Score=36.67 Aligned_cols=62 Identities=16% Similarity=0.283 Sum_probs=35.8
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEE-----cccCCCCCCCcccEEEEEC--CEEEEEcCccCCCCCee
Q 007468 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQ-----LNLKGCPSPRSGHRMVLYK--HKIIVFGGFYDTLREVR 206 (602)
Q Consensus 134 ~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~-----~~~~~~p~~R~~h~~~~~~--~~Lyv~GG~~~~~~~~~ 206 (602)
++++|+|-| +..|+||..+++-.. +...-+..+..-.++..+. +++|+|-|
T Consensus 548 ~gktYFFkG-------------~~ywryd~~~~~vd~gYPk~i~~~w~G~p~~iDAAf~~~~~g~~YFFkG--------- 605 (631)
T 1ck7_A 548 NKKTYIFAG-------------DKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKG--------- 605 (631)
T ss_dssp TCEEEEEET-------------TEEEEEETTTTEECTTCCEETTTSCSSCCTTCCEEECCTTSCBCEEEET---------
T ss_pred CCeEEEEEC-------------CEEEEEcCCcccccCCCCcchHhhcCCCCCCCcEeEEEcCCCeEEEEEC---------
Confidence 578999977 468999987664221 1110011122233444444 78999977
Q ss_pred eeceEEEEECCCC
Q 007468 207 YYNDLYVFDLDQF 219 (602)
Q Consensus 207 ~~~~v~~yd~~t~ 219 (602)
+..|+||..+.
T Consensus 606 --~~Ywr~d~~~~ 616 (631)
T 1ck7_A 606 --AYYLKLENQSL 616 (631)
T ss_dssp --TEEECCBTTBT
T ss_pred --CEEEEEeCccc
Confidence 34677776543
No 320
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=31.68 E-value=5.7e+02 Score=28.30 Aligned_cols=153 Identities=14% Similarity=0.110 Sum_probs=79.4
Q ss_pred CeEEEEECCC--CcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCC-CCeeeeceEEEEECCC--------CceEE-
Q 007468 156 KDFWMLDLKT--NQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTL-REVRYYNDLYVFDLDQ--------FKWQE- 223 (602)
Q Consensus 156 ~dv~~yd~~t--~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~-~~~~~~~~v~~yd~~t--------~~W~~- 223 (602)
+.+|..++.. ..|.++.. |. ... -....++++|+....+-.. ........|..+++.+ ..|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~---~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 343 (711)
T 4hvt_A 269 YDNYILDTKYKNLKLQKINM---PS-DAT-LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKIL 343 (711)
T ss_dssp EEEEEEECSSSSCEEEECCS---CT-TCE-EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEE
T ss_pred eeEEEEcCCCCCCcceEeec---CC-cce-EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEE
Confidence 5677777653 56777633 32 222 2345689999976432100 0011245788888765 36887
Q ss_pred eccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEE
Q 007468 224 IKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC 303 (602)
Q Consensus 224 v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~ 303 (602)
+.+. ..+.-..+...++.||+..-..+ ...+++|++.+..|....... .|.. ...+..
T Consensus 344 ~~~~------~~~~l~~~~~~~~~l~~~~~~~~--------------~~~l~~~~~~~g~~~~~~~i~-lp~~-~~~~~~ 401 (711)
T 4hvt_A 344 FTPT------ANEVFNFISTTKDRVFLATYDNV--------------VAKVVTFTLENEQWTKPVVLK-LPYQ-NAIFGM 401 (711)
T ss_dssp ECCC------TTEEEEEEEECSSCEEEEEEETT--------------EEEEEEECEETTEECCCEEEC-CCST-TCEEEE
T ss_pred ECCC------CCCeEEEEEEECCEEEEEEEECC--------------EEEEEEEECCCCceEEEeccC-CCCC-eEEEEE
Confidence 4333 12333344455777776543322 245888988778774322011 1221 112222
Q ss_pred EE---CCeEEE-eccccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 304 VH---KKRALL-FGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 304 ~~---~~~lyv-~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
.. ++.+++ +.+.. ....+|.||+. ..+..+..
T Consensus 402 ~~~~~~~~~~~~~ss~~------------~P~~~~~~d~~-~~~~~l~~ 437 (711)
T 4hvt_A 402 SSYEEEEEALITIENSI------------VPPTIYLWVKT-HELKIIRK 437 (711)
T ss_dssp ECCTTCSCEEEEEECSS------------SCCEEEEECTT-SCEEEEEC
T ss_pred eecCcCCEEEEEEecCC------------CCCEEEEEeCC-CcEEEEec
Confidence 11 233333 33332 24678999987 77766654
No 321
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=31.42 E-value=3.7e+02 Score=26.09 Aligned_cols=104 Identities=12% Similarity=0.066 Sum_probs=50.3
Q ss_pred EEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 007468 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (602)
Q Consensus 73 s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~ 151 (602)
++.+.| ++.+++.|+. +.+.+||..+..-..... .+ ...+..... .+.+.+.||..
T Consensus 24 ~v~fs~--dg~~la~g~~----------~~~~iw~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~d------- 80 (355)
T 3vu4_A 24 DYEFNQ--DQSCLILSTL----------KSFEIYNVHPVAHIMSQE--MR--HLSKVRMLHRTNYVAFVTGVK------- 80 (355)
T ss_dssp EEEECT--TSSEEEEECS----------SEEEEEEETTEEEEEEEE--CS--CCCEEEECTTSSEEEEECSST-------
T ss_pred EEEECC--CCCEEEEEcC----------CEEEEEecCCcceeeeee--cC--CeEEEEEcCCCCEEEEEECCc-------
Confidence 344555 6777777762 123466655443222111 11 111222222 45566677642
Q ss_pred ceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCC
Q 007468 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (602)
Q Consensus 152 ~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~ 219 (602)
..+.++|..+.+-...-. .+. .-.++.+ .+.+++.. -+.+.+||+.+.
T Consensus 81 ----~~v~iWd~~~~~~~~~~~--~~~---~v~~v~~~~~~~~~~~-----------~~~i~i~d~~~~ 129 (355)
T 3vu4_A 81 ----EVVHIWDDVKKQDVSRIK--VDA---PVKDLFLSREFIVVSY-----------GDVISVFKFGNP 129 (355)
T ss_dssp ----TEEEEEETTTTEEEEEEE--CSS---CEEEEEECSSEEEEEE-----------TTEEEEEESSTT
T ss_pred ----cEEEEEECCCCcEEEEEE--CCC---ceEEEEEcCCEEEEEE-----------cCEEEEEECCCC
Confidence 368889988876433211 121 1222333 34444432 246888888765
No 322
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=30.82 E-value=3.9e+02 Score=26.20 Aligned_cols=109 Identities=12% Similarity=0.139 Sum_probs=53.1
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCce-EEeccCCCCCC
Q 007468 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW-QEIKPRFGSMW 232 (602)
Q Consensus 156 ~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W-~~v~~~~~~~~ 232 (602)
+.+++||+.+.+-... .|..... .+++. +++||+..-...........+.|.+||+.+.+- ..+...+ ...
T Consensus 31 ~~v~v~D~~t~~~~~~----i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~-~~~ 104 (361)
T 2oiz_A 31 SRVHVYDYTNGKFLGM----VPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP-KRV 104 (361)
T ss_dssp CEEEEEETTTCCEEEE----EECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT-TBC
T ss_pred CeEEEEECCCCeEEEE----ecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc-ccc
Confidence 4788999888765432 1222222 23332 558888753211100001246799999987543 3333221 000
Q ss_pred CCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeE
Q 007468 233 PSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (602)
Q Consensus 233 P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (602)
.....-+.+++. +..||+.... ..+.+.+||+.+.+-.
T Consensus 105 ~~g~~p~~i~~spdg~~l~v~n~~---------------~~~~v~v~d~~~~~~~ 144 (361)
T 2oiz_A 105 QGLNYDGLFRQTTDGKFIVLQNAS---------------PATSIGIVDVAKGDYV 144 (361)
T ss_dssp CBCCCGGGEEECTTSSEEEEEEES---------------SSEEEEEEETTTTEEE
T ss_pred ccCCCcceEEECCCCCEEEEECCC---------------CCCeEEEEECCCCcEE
Confidence 001112233333 5677775321 0245888898877543
No 323
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=30.18 E-value=6e+02 Score=28.10 Aligned_cols=107 Identities=14% Similarity=0.143 Sum_probs=58.9
Q ss_pred CcEEEEEcCC--CcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCC--------CcEEE
Q 007468 101 GDLYRYDVEK--QEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT--------NQWEQ 170 (602)
Q Consensus 101 ~dv~~yd~~~--~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t--------~~W~~ 170 (602)
+.+|..+... ..|..+.. |. ...+ ....++.+||.....-.... .......+..+++.+ ..|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~---~~-~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 342 (711)
T 4hvt_A 269 YDNYILDTKYKNLKLQKINM---PS-DATL-QGSFKEYVFWLLRSDWKFKS-HNIKAGSLVALHFTDLLKTESDKTSLKI 342 (711)
T ss_dssp EEEEEEECSSSSCEEEECCS---CT-TCEE-EEEETTEEEEECSSCEEETT-EEECTTCEEEEEGGGGGSCGGGCTTCEE
T ss_pred eeEEEEcCCCCCCcceEeec---CC-cceE-eeeECCEEEEEECccccccc-ccCCCCeEEEEECCcccccccccccceE
Confidence 6778777653 67887732 22 3332 34568999997643210000 011345688888765 46887
Q ss_pred cccCCCCCCCcc-cEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEE
Q 007468 171 LNLKGCPSPRSG-HRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE 223 (602)
Q Consensus 171 ~~~~~~p~~R~~-h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~ 223 (602)
+-. |..... ......++.||+..-... ...++++++.+..|..
T Consensus 343 ~~~---~~~~~~l~~~~~~~~~l~~~~~~~~-------~~~l~~~~~~~g~~~~ 386 (711)
T 4hvt_A 343 LFT---PTANEVFNFISTTKDRVFLATYDNV-------VAKVVTFTLENEQWTK 386 (711)
T ss_dssp EEC---CCTTEEEEEEEECSSCEEEEEEETT-------EEEEEEECEETTEECC
T ss_pred EEC---CCCCCeEEEEEEECCEEEEEEEECC-------EEEEEEEECCCCceEE
Confidence 422 222222 233444667776543221 4578899988887743
No 324
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=29.57 E-value=5.7e+02 Score=27.67 Aligned_cols=176 Identities=11% Similarity=0.109 Sum_probs=86.4
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCC-CceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPP-PRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDF 158 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~-~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv 158 (602)
++..+..++. ...|.+|+... .+..+. ...|. .+..|+++.- ++++++.||.+ ..+
T Consensus 96 dG~~LAs~s~---------dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~D-----------GtV 153 (588)
T 2j04_A 96 IDDWMAVLSN---------NGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNED-----------GEL 153 (588)
T ss_dssp SSSCEEEEET---------TSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETT-----------SEE
T ss_pred CCCEEEEEeC---------CCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCC-----------CEE
Confidence 5666666652 23677888444 555554 33332 3445544443 57777777753 357
Q ss_pred EEEECCCCc--------EEEcccCC-CCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCc----eEEec
Q 007468 159 WMLDLKTNQ--------WEQLNLKG-CPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK----WQEIK 225 (602)
Q Consensus 159 ~~yd~~t~~--------W~~~~~~~-~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~----W~~v~ 225 (602)
.+||+.++. ...+.... ..... -.+.+...+. ++.+|.+ +.+..+|+.++. |..+.
T Consensus 154 kIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~-V~sVawSPdg-Laass~D---------~tVrlWd~~~~~~~~~~~tL~ 222 (588)
T 2j04_A 154 QFFSIRKNSENTPEFYFESSIRLSDAGSKDW-VTHIVWYEDV-LVAALSN---------NSVFSMTVSASSHQPVSRMIQ 222 (588)
T ss_dssp EEEECCCCTTTCCCCEEEEEEECSCTTCCCC-EEEEEEETTE-EEEEETT---------CCEEEECCCSSSSCCCEEEEE
T ss_pred EEEECCCCccccccceeeeeeeccccccccc-EEEEEEcCCc-EEEEeCC---------CeEEEEECCCCccccceeeec
Confidence 788888763 22221100 01111 1122223344 5555542 568888887654 33442
Q ss_pred cCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEE-
Q 007468 226 PRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV- 304 (602)
Q Consensus 226 ~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~- 304 (602)
.. . ...-.+++..+ .+++.++ .+. +..||+.+..=..... | ..-....+++
T Consensus 223 ~~-----h-~~~V~svaFsg-~~LASa~-~~t----------------IkLWd~~~~~~~~~~~-g---h~~~V~~va~~ 274 (588)
T 2j04_A 223 NA-----S-RRKITDLKIVD-YKVVLTC-PGY----------------VHKIDLKNYSISSLKT-G---SLENFHIIPLN 274 (588)
T ss_dssp CC-----C-SSCCCCEEEET-TEEEEEC-SSE----------------EEEEETTTTEEEEEEC-S---CCSCCCEEEET
T ss_pred cc-----c-cCcEEEEEEEC-CEEEEEe-CCe----------------EEEEECCCCeEEEEEc-C---CCceEEEEEee
Confidence 22 1 11112222224 4444444 233 8889988776644432 2 1112223444
Q ss_pred -E-CCeEEEeccccc
Q 007468 305 -H-KKRALLFGGVVD 317 (602)
Q Consensus 305 -~-~~~lyv~GG~~~ 317 (602)
- ++.+++.++.++
T Consensus 275 ~s~d~~~La~a~edG 289 (588)
T 2j04_A 275 HEKESTILLMSNKTS 289 (588)
T ss_dssp TCSSCEEEEECSSCE
T ss_pred eCCCCCEEEEEcCCC
Confidence 3 456777877654
No 325
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=29.41 E-value=4.5e+02 Score=26.43 Aligned_cols=188 Identities=7% Similarity=0.009 Sum_probs=99.8
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCC----cEEEecCCCCCCCceeeEEEE--ECCEEEEEeCccCCCCCCccee
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ----EWKVISSPNSPPPRSAHQAVS--WKNYLYIFGGEFTSPNQERFHH 154 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~----~W~~l~~~~~P~~R~~hs~~~--~~~~iyV~GG~~~~~~~~~~~~ 154 (602)
++.||+.-- ....|+++++... ....+.... ...-.++++ .++.||+.-..
T Consensus 123 ~~~lywsD~---------~~~~I~~~~~~g~~~~~~~~~~~~~~---~~~p~glavD~~~~~lY~~d~~----------- 179 (400)
T 3p5b_L 123 SNRIYWSDL---------SQRMICSTQLDRAHGVSSYDTVISRD---IQAPDGLAVDWIHSNIYWTDSV----------- 179 (400)
T ss_dssp TTEEEEEET---------TTTEEEEEEC------CCCEEEECSS---CSCEEEEEEETTTTEEEEEETT-----------
T ss_pred cCceEEEec---------CCCeEEEEEcccCCCCCcceEEEeCC---CCCcccEEEEecCCceEEEECC-----------
Confidence 466776533 1235777877652 222332211 122233333 37899988542
Q ss_pred cCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCC
Q 007468 155 YKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (602)
Q Consensus 155 ~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~ 232 (602)
...++++++....-..+....+..| .+.++. ++.||+.--. ....|+++++....-..+... .+
T Consensus 180 ~~~I~~~~~~g~~~~~l~~~~~~~P---~~iavdp~~g~ly~td~~--------~~~~I~~~~~dG~~~~~~~~~---~l 245 (400)
T 3p5b_L 180 LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWG--------TPAKIKKGGLNGVDIYSLVTE---NI 245 (400)
T ss_dssp TTEEEEECTTTCSEEEEEECSSCCE---EEEEEETTTTEEEEEECS--------SSCCEEEEETTSCSCEEEECS---SC
T ss_pred CCeEEEEeCCCCceEEEEeCCCCCc---ceEEEecccCeEEEEeCC--------CCCEEEEEeCCCCccEEEEEC---CC
Confidence 2468889988776555543222223 234443 6789876411 024689998875433333221 01
Q ss_pred CCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCee-EEeecCCCCCCCCceeEEEEECCeE
Q 007468 233 PSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW-SKVKKIGMPPGPRAGFSMCVHKKRA 309 (602)
Q Consensus 233 P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W-~~l~~~g~~P~~R~~~s~~~~~~~l 309 (602)
..| .++++. ++.||+.-... +.|+++|+....- ..+...+..+ ..+++++.++.|
T Consensus 246 ~~P---~glavd~~~~~lY~aD~~~----------------~~I~~~d~dG~~~~~~~~~~~~l~---~P~gl~v~~~~l 303 (400)
T 3p5b_L 246 QWP---NGITLDLLSGRLYWVDSKL----------------HSISSIDVNGGNRKTILEDEKRLA---HPFSLAVFEDKV 303 (400)
T ss_dssp SCE---EEEEEETTTTEEEEEETTT----------------TEEEEEETTSCCCEEEEECSSTTS---SEEEEEEETTEE
T ss_pred Cce---EEEEEEeCCCEEEEEECCC----------------CEEEEEeCCCCccEEEEeCCCCCC---CCEEEEEeCCEE
Confidence 112 234443 78999974432 3488999865433 3333211122 345777789999
Q ss_pred EEeccccccccccccccccccCeeEEEECCCC
Q 007468 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (602)
Q Consensus 310 yv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~ 341 (602)
|+.--. .+.|+++|..+.
T Consensus 304 ywtd~~--------------~~~V~~~~~~~G 321 (400)
T 3p5b_L 304 FWTDII--------------NEAIFSANRLTG 321 (400)
T ss_dssp EEEESS--------------SCSEEEEESSSC
T ss_pred EEecCC--------------CCeEEEEEcCCC
Confidence 987522 356888886554
No 326
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=28.30 E-value=4.8e+02 Score=26.42 Aligned_cols=59 Identities=12% Similarity=0.017 Sum_probs=32.5
Q ss_pred CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEE
Q 007468 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLY 212 (602)
Q Consensus 135 ~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~ 212 (602)
+.+++.|+.+ ..+.+||+.+..-..... + ......++.+ +++.++.|+.+ ..+.
T Consensus 162 ~~~las~s~D-----------g~v~iwD~~~~~~~~~~~---~-~~~~v~~v~wspdg~~lasgs~d---------g~v~ 217 (434)
T 2oit_A 162 PSMVAVCLAD-----------GSIAVLQVTETVKVCATL---P-STVAVTSVCWSPKGKQLAVGKQN---------GTVV 217 (434)
T ss_dssp TTEEEEEETT-----------SCEEEEEESSSEEEEEEE---C-GGGCEEEEEECTTSSCEEEEETT---------SCEE
T ss_pred CCEEEEEECC-----------CeEEEEEcCCCcceeecc---C-CCCceeEEEEcCCCCEEEEEcCC---------CcEE
Confidence 4577777653 347788887763221111 1 1222233444 46666677653 3688
Q ss_pred EEECC
Q 007468 213 VFDLD 217 (602)
Q Consensus 213 ~yd~~ 217 (602)
+||+.
T Consensus 218 iwd~~ 222 (434)
T 2oit_A 218 QYLPT 222 (434)
T ss_dssp EECTT
T ss_pred EEccC
Confidence 88887
No 327
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=27.67 E-value=3.3e+02 Score=27.86 Aligned_cols=134 Identities=10% Similarity=0.052 Sum_probs=67.9
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCcccEEEEEC-CEEEEEcCccCCCCCeeeeceEEEEECCCCceE---EeccCCCCC
Q 007468 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK-HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ---EIKPRFGSM 231 (602)
Q Consensus 156 ~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~-~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~---~v~~~~~~~ 231 (602)
..+.+||+.++....+.. ...+-.+-++..+ +.||+....... ....++.++... .|. .+...
T Consensus 159 ~~I~~id~~~~~v~~~~~---~~~~P~~ia~d~~G~~lyvad~~~~~-----~~~~v~~~~~~g-~~~~~~~l~~~---- 225 (430)
T 3tc9_A 159 HPTRLIDFEKEYVSTVYS---GLSKVRTICWTHEADSMIITNDQNNN-----DRPNNYILTRES-GFKVITELTKG---- 225 (430)
T ss_dssp EEEEEEETTTTEEEEEEC---CCSCEEEEEECTTSSEEEEEECCSCT-----TSEEEEEEEGGG-TSCSEEEEEEC----
T ss_pred CcEEEEECCCCEEEEEec---CCCCcceEEEeCCCCEEEEEeCCCCc-----ccceEEEEeCCC-ceeeeeeeccC----
Confidence 457889998888777643 1111122222223 458887643221 122456666533 232 22222
Q ss_pred CCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE--CC
Q 007468 232 WPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KK 307 (602)
Q Consensus 232 ~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~--~~ 307 (602)
..| +.+++. ++.||+.--.. ..|++|++.+..-..+...+....| ..+++. ++
T Consensus 226 -~~p---~giavdp~~g~lyv~d~~~----------------~~V~~~~~~~~~~~~~~~~~~~~~P---~gia~~pdG~ 282 (430)
T 3tc9_A 226 -QNC---NGAETHPINGELYFNSWNA----------------GQVFRYDFTTQETTPLFTIQDSGWE---FHIQFHPSGN 282 (430)
T ss_dssp -SSC---CCEEECTTTCCEEEEETTT----------------TEEEEEETTTTEEEEEEECSSSSCC---EEEEECTTSS
T ss_pred -CCc---eEEEEeCCCCEEEEEECCC----------------CEEEEEECCCCcEEEEEEcCCCCcc---eeEEEcCCCC
Confidence 222 234444 67888864332 2499999987765444332211112 244444 34
Q ss_pred eEEEeccccccccccccccccccCeeEEEECC
Q 007468 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (602)
Q Consensus 308 ~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~ 339 (602)
.||+.--. .+.|++|++.
T Consensus 283 ~lyv~d~~--------------~~~I~~~~~d 300 (430)
T 3tc9_A 283 YAYIVVVN--------------QHYILRSDYD 300 (430)
T ss_dssp EEEEEETT--------------TTEEEEEEEE
T ss_pred EEEEEECC--------------CCEEEEEeCC
Confidence 48886422 3568887665
No 328
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=26.87 E-value=1.3e+02 Score=30.15 Aligned_cols=101 Identities=12% Similarity=0.046 Sum_probs=50.0
Q ss_pred ceEEEEECCCC--ceEEeccCCCCCCCCCccceeEEEeCCEEEEEcC-ccCCCCCccCCCCCCceeeeEEEEeCCCCeeE
Q 007468 209 NDLYVFDLDQF--KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGG-YSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (602)
Q Consensus 209 ~~v~~yd~~t~--~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG-~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (602)
..|+.+|..++ .|+.-.... . |.-.........++.+||+.. .++. ++.|++.+..|.
T Consensus 20 G~l~Ald~~tG~~~W~~~~~~~--~-p~~~~~~~~~~~~~~~~vv~p~~dG~----------------l~a~~~~~G~~~ 80 (339)
T 2be1_A 20 GGLHAVDRRNGHIIWSIEPENF--Q-PLIEIQEPSRLETYETLIIEPFGDGN----------------IYYFNAHQGLQK 80 (339)
T ss_dssp SCEEEEETTTTEEEEEECGGGS--C-CSEECCCSCTTTSSEEEEECCSTTTE----------------EEEEETTTEEEE
T ss_pred CeEEEEECCCCcEEEEecCCcc--C-CcEEecCCccccCCcEEEEEECCCCE----------------EEEEECCCCcEE
Confidence 46888998775 488654310 0 111000011113557777653 3443 888988776554
Q ss_pred EeecCCC--CCCCCceeEEEEE-------CCeEEEeccccccccccccccccccCeeEEEECCCCc
Q 007468 286 KVKKIGM--PPGPRAGFSMCVH-------KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 286 ~l~~~g~--~P~~R~~~s~~~~-------~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
....... .-.|..+.+.-++ .+..+++|+.. ..++.+|+.+.+
T Consensus 81 ~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~--------------g~l~ald~~tG~ 132 (339)
T 2be1_A 81 LPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMR--------------TIMYTINMLNGE 132 (339)
T ss_dssp EEEEHHHHHTTCSEEEECC----------CCEEEEECEEE--------------EEEEEEETTTCC
T ss_pred eeeccccceeccccccCCCceeecccccccCCEEEEEecC--------------CEEEEEECCCCc
Confidence 3211100 0112222222223 55566666654 358999998875
No 329
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=26.55 E-value=6.8e+02 Score=27.55 Aligned_cols=180 Identities=16% Similarity=0.188 Sum_probs=0.0
Q ss_pred CCCCCCcceEEEEecCCCCEEEEEc--ceecCCCCceeeCcEEEEEcCCCcEEEecCCCCC------------CCceeeE
Q 007468 64 PAPSPRSNCSLNINPLKETELILYG--GEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSP------------PPRSAHQ 129 (602)
Q Consensus 64 ~~P~~R~~~s~~~~~~~~~~iyv~G--G~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P------------~~R~~hs 129 (602)
..|.....+.+++.|...+.||+.. | .-||+=.=...+|+.+...+.. ....+..
T Consensus 127 ~~~g~~~~~~l~~~p~~~~~v~~g~~~g-----------~gl~~S~DgG~tW~~~~~~~~~~~~~~~p~~~~~~~~~g~~ 195 (737)
T 2cn3_A 127 NMPGRSMGERLAIDPNDNRILYLGTRCG-----------NGLWRSTDYGVTWSKVESFPNPGTYIYDPNFDYTKDIIGVV 195 (737)
T ss_dssp TSTTTTSCCCEEECSSCTTCEEEECSTT-----------CCEEEESSTTSSCEECTTCCCCCCCBSCTTSTTTCSBCCEE
T ss_pred CcCcccccceEEECCCCCCEEEEeeccC-----------CcEEEeCCCCcceecccCCCCCcccccCcccccccCCCCEE
Q ss_pred EEEECC----------EEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE-CCEEEEEcCc
Q 007468 130 AVSWKN----------YLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGF 198 (602)
Q Consensus 130 ~~~~~~----------~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~ 198 (602)
.+.++. .||+.-.... ..+++=.=.-.+|+.+.. +|.....|.+++. ++.||+..+-
T Consensus 196 ~v~~dp~~~~~~~~~~~v~~~~~~~~----------~~v~~S~DgG~tW~~~~~--~p~~~~~~~~~~~~~~~l~~~~~d 263 (737)
T 2cn3_A 196 WVVFDKSSSTPGNPTKTIYVGVADKN----------ESIYRSTDGGVTWKAVPG--QPKGLLPHHGVLASNGMLYITYGD 263 (737)
T ss_dssp EEEECGGGSCTTSCCSCEEEEESCSS----------CCEEEESSTTSCCEECTT--CCCSSEEEEEEECTTSEEEEEEES
T ss_pred EEEcCCCCcccCCCCCEEEEEecCCC----------ccEEEEcCCCCceEECCC--CCCcccceEEEECCCCeEEEEecC
Q ss_pred cCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCC----ccceeEEEe----CCEEEEEcCc----cCCCCCccCCCC
Q 007468 199 YDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP----RSGFQFFVY----QDEVFLYGGY----SKEVSTDKNQSE 266 (602)
Q Consensus 199 ~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~----R~~~~~~~~----~~~Iyv~GG~----~~~~~~~~~~~~ 266 (602)
............|++++-...+|+.+.+. |.. +++++.+.+ .+.||+.+.. ...
T Consensus 264 ~~g~y~~~~~g~v~~s~d~G~tW~~i~~~-----~~~~~~~~~~~~~i~v~p~~~~~ly~~~~~~~~~~~~--------- 329 (737)
T 2cn3_A 264 TCGPYDGNGKGQVWKFNTRTGEWIDITPI-----PYSSSDNRFCFAGLAVDRQNPDIIMVTSMNAWWPDEY--------- 329 (737)
T ss_dssp SCCSSCCSCCEEEEEEETTTCCEEECCSS-----CTTSTTCCSEEEEEEECTTCTTCEEEEEECCCSSCCC---------
T ss_pred CCCccccccCceEEEEeCCCCCEEEccCC-----CCCCcccccccccEEEcCCCCCEEEEEecccCCCCcc---------
Q ss_pred CCceeeeEEEEeCCCCeeEEe
Q 007468 267 KGIIHSDLWSLDPRTWEWSKV 287 (602)
Q Consensus 267 ~~~~~~dv~~yd~~t~~W~~l 287 (602)
+++=.=.-.+|+.+
T Consensus 330 -------l~~S~DgG~tW~~~ 343 (737)
T 2cn3_A 330 -------IFRSTDGGATWKNI 343 (737)
T ss_dssp -------EEEESSTTSSCEES
T ss_pred -------EEEeCCCCccccch
No 330
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=26.49 E-value=2.7e+02 Score=30.54 Aligned_cols=69 Identities=10% Similarity=0.099 Sum_probs=35.2
Q ss_pred eEEEEECCCCcEEEcccCCCCCCCccc----EEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEecc
Q 007468 157 DFWMLDLKTNQWEQLNLKGCPSPRSGH----RMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (602)
Q Consensus 157 dv~~yd~~t~~W~~~~~~~~p~~R~~h----~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~ 226 (602)
.+++||+.+++=..+-.. ........ -...-+++.++|+..........+..+++.||+.+.....+..
T Consensus 37 ~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~ 109 (740)
T 4a5s_A 37 NILVFNAEYGNSSVFLEN-STFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEER 109 (740)
T ss_dssp EEEEEETTTCCEEEEECT-TTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC
T ss_pred cEEEEECCCCceEEEEec-hhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEccc
Confidence 588999988875444221 11111111 1112255555555432211111245789999999987655443
No 331
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=26.37 E-value=3.4e+02 Score=27.73 Aligned_cols=124 Identities=7% Similarity=-0.005 Sum_probs=62.9
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEE---EcccCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE---QLNLKGC 176 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~---~~~~~~~ 176 (602)
+.|++||+.++....+... ..+-.+-++-- ++.|||....... ....++.++... .|. .+..
T Consensus 159 ~~I~~id~~~~~v~~~~~~---~~~P~~ia~d~~G~~lyvad~~~~~-------~~~~v~~~~~~g-~~~~~~~l~~--- 224 (430)
T 3tc9_A 159 HPTRLIDFEKEYVSTVYSG---LSKVRTICWTHEADSMIITNDQNNN-------DRPNNYILTRES-GFKVITELTK--- 224 (430)
T ss_dssp EEEEEEETTTTEEEEEECC---CSCEEEEEECTTSSEEEEEECCSCT-------TSEEEEEEEGGG-TSCSEEEEEE---
T ss_pred CcEEEEECCCCEEEEEecC---CCCcceEEEeCCCCEEEEEeCCCCc-------ccceEEEEeCCC-ceeeeeeecc---
Confidence 5788999998888876531 22222222222 3559988643221 112355565432 222 2221
Q ss_pred CCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEc
Q 007468 177 PSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYG 252 (602)
Q Consensus 177 p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~G 252 (602)
...-|.+++. ++.||+.--. .+.|++|++.+..-..+...+.. ..|+ .+++. ++.|||.-
T Consensus 225 --~~~p~giavdp~~g~lyv~d~~---------~~~V~~~~~~~~~~~~~~~~~~~--~~P~---gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 225 --GQNCNGAETHPINGELYFNSWN---------AGQVFRYDFTTQETTPLFTIQDS--GWEF---HIQFHPSGNYAYIVV 288 (430)
T ss_dssp --CSSCCCEEECTTTCCEEEEETT---------TTEEEEEETTTTEEEEEEECSSS--SCCE---EEEECTTSSEEEEEE
T ss_pred --CCCceEEEEeCCCCEEEEEECC---------CCEEEEEECCCCcEEEEEEcCCC--Ccce---eEEEcCCCCEEEEEE
Confidence 1222444554 5788876321 35799999987765444333111 1222 23443 44588875
Q ss_pred Cc
Q 007468 253 GY 254 (602)
Q Consensus 253 G~ 254 (602)
-.
T Consensus 289 ~~ 290 (430)
T 3tc9_A 289 VN 290 (430)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 332
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=24.91 E-value=5.4e+02 Score=25.83 Aligned_cols=19 Identities=5% Similarity=0.116 Sum_probs=13.6
Q ss_pred cceeEEEe-CCEEEEEcCcc
Q 007468 237 SGFQFFVY-QDEVFLYGGYS 255 (602)
Q Consensus 237 ~~~~~~~~-~~~Iyv~GG~~ 255 (602)
..|++++. ++.||.+|-..
T Consensus 295 ~~hs~al~~~G~v~~wG~n~ 314 (413)
T 1a12_A 295 QHHTVCMDSEGKAYSLGRAE 314 (413)
T ss_dssp SSEEEEEETTSCEEEEECCG
T ss_pred cceEEEEeCCCCEEEeeCCC
Confidence 34666665 88999999644
No 333
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=23.77 E-value=5.6e+02 Score=25.60 Aligned_cols=168 Identities=8% Similarity=0.028 Sum_probs=86.6
Q ss_pred CCEEEEEcceecCCCCc---eeeCcEEEEEcCC--CcEEEecCCCC---CCCceeeEEEEEC---C--EEEEEeCccCCC
Q 007468 81 ETELILYGGEFYNGNKT---YVYGDLYRYDVEK--QEWKVISSPNS---PPPRSAHQAVSWK---N--YLYIFGGEFTSP 147 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~---~~~~dv~~yd~~~--~~W~~l~~~~~---P~~R~~hs~~~~~---~--~iyV~GG~~~~~ 147 (602)
++.+|+--|..+.+-.. .....+++||+.+ .+-..+..... +..-.-|.+.++. + +|||+--...
T Consensus 60 ~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~-- 137 (355)
T 3sre_A 60 NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGS-- 137 (355)
T ss_dssp TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTT--
T ss_pred CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCC--
Confidence 57787776542211110 1346799999983 34554442211 1234567766653 3 5888754311
Q ss_pred CCCcceecCeEEEEECCCCcEEEcccCC-CCCCCcccEEEEECCEEEEEcCccCCCC--------CeeeeceEEEEECCC
Q 007468 148 NQERFHHYKDFWMLDLKTNQWEQLNLKG-CPSPRSGHRMVLYKHKIIVFGGFYDTLR--------EVRYYNDLYVFDLDQ 218 (602)
Q Consensus 148 ~~~~~~~~~dv~~yd~~t~~W~~~~~~~-~p~~R~~h~~~~~~~~Lyv~GG~~~~~~--------~~~~~~~v~~yd~~t 218 (602)
...-.++.+++.+.....+.... .+..+.+-..+.-++.+|+-+-..-... .......+++|++.
T Consensus 138 -----~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~- 211 (355)
T 3sre_A 138 -----SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN- 211 (355)
T ss_dssp -----CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT-
T ss_pred -----CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC-
Confidence 12456888888887776664422 2444455555556889887543211100 00124578999884
Q ss_pred CceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCC
Q 007468 219 FKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR 280 (602)
Q Consensus 219 ~~W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~ 280 (602)
+.+.+... -..--+++.. +..|||.--.. ..+++|+..
T Consensus 212 -~~~~~~~~-------l~~pNGia~spDg~~lYvadt~~----------------~~I~~~~~~ 251 (355)
T 3sre_A 212 -DVRVVAEG-------FDFANGINISPDGKYVYIAELLA----------------HKIHVYEKH 251 (355)
T ss_dssp -CCEEEEEE-------ESSEEEEEECTTSSEEEEEEGGG----------------TEEEEEEEC
T ss_pred -eEEEeecC-------CcccCcceECCCCCEEEEEeCCC----------------CeEEEEEEC
Confidence 44443221 0111223333 45788864332 348888875
No 334
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=23.13 E-value=5.1e+02 Score=30.42 Aligned_cols=187 Identities=12% Similarity=0.009 Sum_probs=97.1
Q ss_pred ceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCC---CCCCCcccEEEEE---CCEEEEEcCc
Q 007468 125 RSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG---CPSPRSGHRMVLY---KHKIIVFGGF 198 (602)
Q Consensus 125 R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~---~p~~R~~h~~~~~---~~~Lyv~GG~ 198 (602)
-.++++....+.+ |+|.-... .....++.|......|..-.... +.....|+++++- +...||+|--
T Consensus 334 q~GfSa~~t~d~~-~~GapG~~------~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sylGySVa~~~~~g~~~~v~GAP 406 (1095)
T 3k6s_A 334 QEGFSAVFTPDGP-VLGAVGSF------TWSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWKGVQSLVLGAP 406 (1095)
T ss_dssp CTTSSEECCTTCC-EEEESCST------TTTBEEEECCSSSCCEEECCCSSCCCCCSCCBTSSEECCCCSSSCEEEEEET
T ss_pred cccccceecCCcc-eEcccccC------CccceeEEecCCCcceeeccccccccccccccceeeEEeccCCceEEEEEcc
Confidence 3466666665555 78754322 23355777776655443222111 1223345555442 2345677642
Q ss_pred cCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe------CCEEEEEcCccCCCCCccCCCCCCceee
Q 007468 199 YDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY------QDEVFLYGGYSKEVSTDKNQSEKGIIHS 272 (602)
Q Consensus 199 ~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~------~~~Iyv~GG~~~~~~~~~~~~~~~~~~~ 272 (602)
.. .....+++|......|.......+ .......|+++++. ..-|||+|.-... . .....
T Consensus 407 ~~-----~~~G~V~i~~~~~~~~~~~~~~~g-~~~gs~fG~sva~~DvngDG~~DllvvGAP~~~--~-------~~~~G 471 (1095)
T 3k6s_A 407 RY-----QHTGKAVIFTQVSRQWRMKAEVTG-TQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYY--E-------QTRGG 471 (1095)
T ss_dssp TG-----GGTCEEEEEECCTTTCCEEEEECC-SSTTSCTTSCEEEECSSSSSSCCEEEEECSSCC--S-------SCCCB
T ss_pred cc-----cccceEEEEEecCCcceEEeeccc-CcccCcCCceEEEEEeCCCCCccEEEECCcccc--C-------cCCCC
Confidence 21 124578999888788988765432 22445677777764 1246677643221 0 01224
Q ss_pred eEEEEeCCC--CeeEEeecC-CC--CCCCCceeEEEEECC-----e--EEEeccccccccccccccccccCeeEEEECCC
Q 007468 273 DLWSLDPRT--WEWSKVKKI-GM--PPGPRAGFSMCVHKK-----R--ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (602)
Q Consensus 273 dv~~yd~~t--~~W~~l~~~-g~--~P~~R~~~s~~~~~~-----~--lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t 340 (602)
.+|+|.... ..|...... |. .+..|++++++++++ . | ++|.-... .....||+|.-..
T Consensus 472 ~Vyvy~~~~~~~~~~~~~~l~g~~~~~~~~FG~sva~~gD~NgDG~~Dl-~VGAP~~~---------~~~G~vyi~~g~~ 541 (1095)
T 3k6s_A 472 QVSVCPLPRGWRRWWCDAVLYGEQGHPWGRFGAALTVLGDVNGDKLTDV-VIGAPGEE---------ENRGAVYLFHGVL 541 (1095)
T ss_dssp CEEEEECCSSTTCCCSCSSCCCCCSCSSCCBTSCEEEEECSSSSSCCEE-EEECTTTT---------TSCCBEEEEEBCS
T ss_pred EEEEEEeCCCCcceeeeEEeecccCCccccCccceEeecccCCCCCcCE-EEeCCcCC---------CCCCEEEEecCCC
Confidence 577875433 457643222 22 145788988887522 1 4 34322111 1245688888765
Q ss_pred C-ce
Q 007468 341 H-RW 343 (602)
Q Consensus 341 ~-~W 343 (602)
. .|
T Consensus 542 ~~g~ 545 (1095)
T 3k6s_A 542 GPSI 545 (1095)
T ss_dssp SSCB
T ss_pred CCCc
Confidence 4 44
No 335
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=22.72 E-value=2.7e+02 Score=28.78 Aligned_cols=83 Identities=13% Similarity=0.071 Sum_probs=46.6
Q ss_pred CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe--CC-EEEEEcCccCCCCCccCCC
Q 007468 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QD-EVFLYGGYSKEVSTDKNQS 265 (602)
Q Consensus 189 ~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~--~~-~Iyv~GG~~~~~~~~~~~~ 265 (602)
+++|||.-.....+......+.|.++|+.+.+ .+... |.+..-+++++. +. .+|+..+.+
T Consensus 330 g~rlyVa~~~~~~gthk~~s~~VsVID~~T~k--vv~~I-----~vg~~P~gia~spDg~~~lyv~n~~s---------- 392 (426)
T 3c75_H 330 SDRIYLLVDQRDEWKHKAASRFVVVLNAETGE--RINKI-----ELGHEIDSINVSQDAEPLLYALSAGT---------- 392 (426)
T ss_dssp GTEEEEEEEECCTTCTTSCEEEEEEEETTTCC--EEEEE-----EEEEEECEEEECCSSSCEEEEEETTT----------
T ss_pred CCEEEEEecccccccccCCCCEEEEEECCCCe--EEEEE-----ECCCCcCeEEEccCCCEEEEEEcCCC----------
Confidence 57899974321100000125789999988864 33333 334444455554 44 677765543
Q ss_pred CCCceeeeEEEEeCCCCeeEEe-ecCCCCC
Q 007468 266 EKGIIHSDLWSLDPRTWEWSKV-KKIGMPP 294 (602)
Q Consensus 266 ~~~~~~~dv~~yd~~t~~W~~l-~~~g~~P 294 (602)
++|.+||+.+.+-... ...|..|
T Consensus 393 ------~~VsVID~~t~kvv~tI~~vG~~P 416 (426)
T 3c75_H 393 ------QTLHIYDAATGEELRSVDQLGRGP 416 (426)
T ss_dssp ------TEEEEEETTTCCEEEEECCCSSSC
T ss_pred ------CeEEEEECCCCCEEEEecCCCCCC
Confidence 3499999988765544 3444444
No 336
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}
Probab=22.51 E-value=21 Score=32.53 Aligned_cols=10 Identities=40% Similarity=1.086 Sum_probs=5.4
Q ss_pred hhhhccCCCC
Q 007468 506 EWVEASEGED 515 (602)
Q Consensus 506 ~w~~~~~~~~ 515 (602)
+||.+.++|+
T Consensus 155 ~WL~eAEEEs 164 (177)
T 2ful_A 155 TWLETAESDD 164 (177)
T ss_dssp HHHHHCC---
T ss_pred HHHHcccccc
Confidence 4999866543
No 337
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=21.47 E-value=5.6e+02 Score=24.74 Aligned_cols=56 Identities=7% Similarity=-0.099 Sum_probs=28.8
Q ss_pred CCEEEEEcCccCCCCCeeeece-EEEEECCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCccCC
Q 007468 189 KHKIIVFGGFYDTLREVRYYND-LYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (602)
Q Consensus 189 ~~~Lyv~GG~~~~~~~~~~~~~-v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~ 257 (602)
++.+++.|+.+ .. +.+||+.+..-...-.. + .....-.+++.. ++.+++.|+.++.
T Consensus 206 ~g~~l~s~s~d---------~~~v~iwd~~~~~~~~~~~~--g--~h~~~v~~~~~s~~~~~l~s~s~d~~ 263 (355)
T 3vu4_A 206 KSDMVATCSQD---------GTIIRVFKTEDGVLVREFRR--G--LDRADVVDMKWSTDGSKLAVVSDKWT 263 (355)
T ss_dssp TSSEEEEEETT---------CSEEEEEETTTCCEEEEEEC--T--TCCSCEEEEEECTTSCEEEEEETTCE
T ss_pred CCCEEEEEeCC---------CCEEEEEECCCCcEEEEEEc--C--CCCCcEEEEEECCCCCEEEEEECCCE
Confidence 56777777753 34 88889887643221110 0 011111222222 6677777776554
No 338
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=21.21 E-value=5.3e+02 Score=24.40 Aligned_cols=205 Identities=10% Similarity=0.059 Sum_probs=105.7
Q ss_pred ceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEEC-CEEEEEeCccCCCCC
Q 007468 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK-NYLYIFGGEFTSPNQ 149 (602)
Q Consensus 71 ~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~-~~iyV~GG~~~~~~~ 149 (602)
-..++..|. ++.||++... -..|+.+|+....++.++... ..-..+.+..+ +.++|.--.
T Consensus 29 lSGla~~~~-~~~L~aV~d~---------~~~I~~ld~~g~v~~~i~l~g---~~D~EGIa~~~~g~~~vs~E~------ 89 (255)
T 3qqz_A 29 ISSLTWSAQ-SNTLFSTINK---------PAAIVEMTTNGDLIRTIPLDF---VKDLETIEYIGDNQFVISDER------ 89 (255)
T ss_dssp EEEEEEETT-TTEEEEEEET---------TEEEEEEETTCCEEEEEECSS---CSSEEEEEECSTTEEEEEETT------
T ss_pred cceeEEeCC-CCEEEEEECC---------CCeEEEEeCCCCEEEEEecCC---CCChHHeEEeCCCEEEEEECC------
Confidence 344555553 4789988762 246999999988888875422 13344555554 555454211
Q ss_pred CcceecCeEEEEECCCCc--EE--EcccC-CCCCCCcccEEEEE---CCEEEEEcCccCCCCCeeeeceEEEEEC--CCC
Q 007468 150 ERFHHYKDFWMLDLKTNQ--WE--QLNLK-GCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDL--DQF 219 (602)
Q Consensus 150 ~~~~~~~dv~~yd~~t~~--W~--~~~~~-~~p~~R~~h~~~~~---~~~Lyv~GG~~~~~~~~~~~~~v~~yd~--~t~ 219 (602)
...+++|++.... |. ..... +......++-..++ +++||+.-... ...++.|+- .+.
T Consensus 90 -----~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~--------p~~i~~~~g~~~~~ 156 (255)
T 3qqz_A 90 -----DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN--------PIEVYKVNGLLSSN 156 (255)
T ss_dssp -----TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS--------SEEEEEEESTTCSS
T ss_pred -----CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC--------CceEEEEcccccCC
Confidence 1456677655443 42 22110 11234555555555 45899975543 136777772 222
Q ss_pred ceEEeccC-CCCCCCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecC-C---C
Q 007468 220 KWQEIKPR-FGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI-G---M 292 (602)
Q Consensus 220 ~W~~v~~~-~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~-g---~ 292 (602)
.-+.+... ..+. ...+--.++++. .+++||....+.. +..||.....=..+.-. | .
T Consensus 157 ~l~i~~~~~~~~~-~~~~d~S~l~~dp~tg~lliLS~~s~~----------------L~~~d~~g~~~~~~~L~~g~~~l 219 (255)
T 3qqz_A 157 ELHISKDKALQRQ-FTLDDVSGAEFNQQKNTLLVLSHESRA----------------LQEVTLVGEVIGEMSLTKGSRGL 219 (255)
T ss_dssp CCEEEECHHHHHT-CCSSCCCEEEEETTTTEEEEEETTTTE----------------EEEECTTCCEEEEEECSTTGGGC
T ss_pred ceeeecchhhccc-cccCCceeEEEcCCCCeEEEEECCCCe----------------EEEEcCCCCEEEEEEcCCccCCc
Confidence 11221110 0000 111222333333 7899999775544 88888776533333221 1 0
Q ss_pred CCCCCceeEEEEE-CCeEEEeccccccccccccccccccCeeEEEECC
Q 007468 293 PPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (602)
Q Consensus 293 ~P~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~ 339 (602)
....+...++++- ++.|||+.= -|-+|+|...
T Consensus 220 ~~~~~qpEGia~d~~G~lyIvsE---------------~n~~y~f~~~ 252 (255)
T 3qqz_A 220 SHNIKQAEGVAMDASGNIYIVSE---------------PNRFYRFTPQ 252 (255)
T ss_dssp SSCCCSEEEEEECTTCCEEEEET---------------TTEEEEEEC-
T ss_pred ccccCCCCeeEECCCCCEEEEcC---------------CceEEEEEec
Confidence 0112344566665 678999832 3668888754
No 339
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=20.58 E-value=8.3e+02 Score=26.42 Aligned_cols=91 Identities=13% Similarity=0.186 Sum_probs=56.4
Q ss_pred CCCCceeeEEEEE------CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE----CC
Q 007468 121 SPPPRSAHQAVSW------KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY----KH 190 (602)
Q Consensus 121 ~P~~R~~hs~~~~------~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~----~~ 190 (602)
.+..-.+|-.... +.++||.-.. .+.+.+.|+.+.+-..+-. .|....-|++++. .+
T Consensus 82 ~~~gd~hh~~~s~t~g~~DG~~lfVnd~~-----------~~rVavIdl~t~~~~~ii~--ip~g~~phg~~~~~~p~~~ 148 (595)
T 1fwx_A 82 HDNGDLHHVHMSFTEGKYDGRFLFMNDKA-----------NTRVARVRCDVMKCDAILE--IPNAKGIHGLRPQKWPRSN 148 (595)
T ss_dssp CCCCCBCCEEEEEETTEEEEEEEEEEETT-----------TTEEEEEETTTTEEEEEEE--CSSCCSEEEEEECCSSBCS
T ss_pred cccCCCCccccCCCCCCcCCCEEEEEcCC-----------CCEEEEEECCCceEeeEEe--CCCCCCCcceeeeecCCCc
Confidence 3445566655555 4568874321 3569999999988665443 5666667777763 56
Q ss_pred EEEEEcCccC----C----CCCeeeeceEEEEECCCCc--eEEe
Q 007468 191 KIIVFGGFYD----T----LREVRYYNDLYVFDLDQFK--WQEI 224 (602)
Q Consensus 191 ~Lyv~GG~~~----~----~~~~~~~~~v~~yd~~t~~--W~~v 224 (602)
++|+-+-+.. . .....+.+.+-++|+.+.+ |+..
T Consensus 149 ~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~ 192 (595)
T 1fwx_A 149 YVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVL 192 (595)
T ss_dssp EEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEE
T ss_pred EEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEE
Confidence 7887753321 0 0113467789999999864 5543
No 340
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=20.34 E-value=8.9e+02 Score=26.72 Aligned_cols=228 Identities=14% Similarity=0.214 Sum_probs=110.0
Q ss_pred eEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCC----CCC---CceeeEEEEE----CCEEEEE
Q 007468 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN----SPP---PRSAHQAVSW----KNYLYIF 140 (602)
Q Consensus 72 ~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~----~P~---~R~~hs~~~~----~~~iyV~ 140 (602)
+++++.|...+.+|+-+- ..-||+-.-...+|+.+.... +|. ......++++ .+.||+.
T Consensus 24 ~~i~~~p~~~~~~y~~~~----------~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~ 93 (763)
T 3a0f_A 24 SGLVAHPTEKDLIYARTD----------IGGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLA 93 (763)
T ss_dssp EEEEECSSSTTCEEEEES----------SSCEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEE
T ss_pred eEEEeCCCCCCEEEEEec----------cCcEEEECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEE
Confidence 556666653345555432 125777777788999886521 011 2222333333 3678887
Q ss_pred eCccCCCCCCcceecCeEEEEECCCCcEEEcccCC-CC---CCCc-ccEEEEE---CCEEEEEcCccCCCCCeeeeceEE
Q 007468 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CP---SPRS-GHRMVLY---KHKIIVFGGFYDTLREVRYYNDLY 212 (602)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~-~p---~~R~-~h~~~~~---~~~Lyv~GG~~~~~~~~~~~~~v~ 212 (602)
.|..... . ....|++=.=.-.+|+++.... .+ ..|. .+.+++. .+.+|+.+- ...++
T Consensus 94 ~g~~~~~-~----~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~----------~~~l~ 158 (763)
T 3a0f_A 94 QGDYVQW-D----PWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSR----------TQGLW 158 (763)
T ss_dssp ECSCTTT-C----SCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECS----------SSCEE
T ss_pred ecccccC-C----CCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeC----------CCcEE
Confidence 6642111 1 1233444333456899886411 11 1232 2344443 357887542 12333
Q ss_pred EEECCCCceEEeccCCCCCCCCCccceeEEEe----CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEee
Q 007468 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY----QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (602)
Q Consensus 213 ~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~----~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~ 288 (602)
+=.=.-.+|+.+...+.. .....+...+.+ .+.||+.....+ .+++=.=.-.+|+.+.
T Consensus 159 ~S~DgG~TW~~~~~~~~~--~~~~~~~~~i~~~p~~~~~~~~~~~~~g----------------~v~~S~DgG~tW~~~~ 220 (763)
T 3a0f_A 159 RSTDRAQTWSRMNQLPDS--STYGIGIISVIFDPKNVGTAYVASHAVG----------------GLWVTWDGGANWSQVG 220 (763)
T ss_dssp EESSTTSSCEECTTSCCC--SCTTTCEEEEEECSSSTTCEEEEESSTT----------------CEEEESSSSSSCEECT
T ss_pred EECCCCcCccccccCccc--CCCccceEEEEECCCCCCEEEEEEeCCC----------------eEEEECCCCCCccccC
Confidence 322223679998765211 011222222222 346776543211 1333333455799886
Q ss_pred cCCCCC-----------------CCCceeEEEEE-CCeEEEeccccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 289 KIGMPP-----------------GPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 289 ~~g~~P-----------------~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
...... .++..+.+++. .+.||+........ .......||+++-...+|+.+.+
T Consensus 221 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~------~~~~~g~v~rS~D~G~tW~~~~~ 292 (763)
T 3a0f_A 221 GQPTQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGRLYITYSDAPGP------WGVLYGEVWSYDPTNGNWKHITP 292 (763)
T ss_dssp TCCCSCCHHHHHHHHHHCCCCSSSSCEEEEEEECTTSCEEEEEESSCSS------SCCCCEEEEEEETTTTEEEECCT
T ss_pred CCccccccccccccccccccccCCCCcceeEEECCCCcEEEEeccCCCC------CCCcceeEEEEeCCCCceEECCC
Confidence 321100 23444555443 57788764210000 00113468888878888988764
Done!