Query 007469
Match_columns 602
No_of_seqs 163 out of 447
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 00:01:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007469.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007469hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1171 Metallothionein-like p 100.0 2.4E-60 5.2E-65 495.8 14.6 366 1-525 1-395 (406)
2 PF03638 TCR: Tesmin/TSO1-like 99.6 1.2E-15 2.6E-20 116.8 2.9 41 196-236 1-41 (42)
3 PF03638 TCR: Tesmin/TSO1-like 99.6 1.6E-15 3.5E-20 116.0 2.5 41 111-151 1-42 (42)
4 KOG1171 Metallothionein-like p 99.4 1.2E-13 2.5E-18 146.4 3.9 127 111-237 215-391 (406)
5 KOG1079 Transcriptional repres 95.8 0.0046 9.9E-08 70.4 1.9 62 111-228 505-569 (739)
6 PF05033 Pre-SET: Pre-SET moti 74.5 2.8 6.2E-05 36.3 2.8 38 196-234 44-103 (103)
7 KOG3813 Uncharacterized conser 69.5 1.9 4.1E-05 48.9 0.7 43 194-237 303-352 (640)
8 PF11430 EGL-1: Programmed cel 44.0 4.4 9.6E-05 27.9 -1.1 13 444-456 7-19 (21)
9 KOG1079 Transcriptional repres 38.7 12 0.00027 43.8 0.7 34 113-147 539-572 (739)
10 COG3097 Uncharacterized protei 30.4 28 0.00061 32.1 1.4 26 478-503 63-88 (106)
11 KOG1924 RhoA GTPase effector D 26.6 1E+02 0.0022 37.5 5.3 24 478-506 972-995 (1102)
12 KOG1924 RhoA GTPase effector D 23.8 1.3E+02 0.0028 36.8 5.3 7 251-257 731-737 (1102)
13 PF07172 GRP: Glycine rich pro 23.5 51 0.0011 29.7 1.8 16 354-369 13-28 (95)
14 KOG3813 Uncharacterized conser 20.3 56 0.0012 37.7 1.6 44 112-156 306-360 (640)
No 1
>KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-60 Score=495.80 Aligned_cols=366 Identities=39% Similarity=0.604 Sum_probs=249.8
Q ss_pred CCCCCCC-CCCCCCCCCCCCCCcchhhhhhhcccccCcccccccCCCCcchhhccCCCCCCCCCCC--------------
Q 007469 1 MGEGEGG-EFPPKKSQSESGGDIPAKKLARQLDFTGGFVGSVILPEHPQSQAVTANSHPPPQPQPK-------------- 65 (602)
Q Consensus 1 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~rqldf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 65 (602)
||+...+ .||++...+ .++.. |-+|+||||++......+-.-+.+ +++. .|-|+..
T Consensus 1 ~g~~~~~~~~~~~~~~~---~~~~~-~~~r~l~f~~gg~~~~~~~~~~~~--~~s~---~p~p~i~~~~~~~~~~~~~i~ 71 (406)
T KOG1171|consen 1 NGVTSSTTANPGQSDET---AQHRG-KRRRCLDFTMGGRTHTSVKPATGS--VASS---CPGPSIGLSLNKQIRSSKDIS 71 (406)
T ss_pred CCccccCCCCCcccccc---ccccc-ccccceeecCCCCcccccCCCccc--cccc---CCcCceeccccceeecccccc
Confidence 4555444 888886433 34888 999999999987321111100111 1111 1222211
Q ss_pred -----------CCCCCCCCCCCCCCCCCCCCCccCCCCCCCCc-ccccchhhccCCcCCCCcccccCcccccchhhhhcC
Q 007469 66 -----------PVVPPVPPPPPPLPGQATQPPVRVPKPESPKS-RSRSNVEVKENTPKKQKQCNCKHSRCLKLYCECFAS 133 (602)
Q Consensus 66 -----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~e~kdgtpkk~K~CnCKKSkCLKLYCECFAa 133 (602)
+.+..+..|+....+...+.++.++.+..+.+ ..+......++++-+++.|+||+|+||||||||||+
T Consensus 72 ~~~~~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~k~~~~ck~SkclklYCeCFAs 151 (406)
T KOG1171|consen 72 LSPDYSASNTIPHQTSGSTPMTLSMGHAIQSPTKHPIPEVRSSDRVKTKKGTSQGAPGSKKKCNCKKSKCLKLYCECFAS 151 (406)
T ss_pred ccccccccccccccCCcccccccccccceecCCcCCCccccccccCccccccccCCCCCccCCCchHHHHHHHhHHHHhh
Confidence 11111222322333445566788877776665 445567777889889999999999999999999999
Q ss_pred CCCCCC-CCCCCCCCChhhHHHHHHHHHHHHhcCCCcCCccccCCCCCCCCCcchhhhhhhccCCcccccccCcCcccch
Q 007469 134 GIYCDG-CNCVNCHNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDNKEETGEVLMLGKHNKGCHCKKSGCLKKY 212 (602)
Q Consensus 134 G~yC~~-CnC~nC~Nn~Ene~eR~eAIe~iL~RNP~AF~PKI~ss~~~~~~s~~~~ge~l~~~kH~KGCnCKKS~CLKkY 212 (602)
|.||++ |+|+||+|+++|+.+|.+|++.+|+|||+||+|||+.+.++..+-.++.+..++.++|++|||||||+|||||
T Consensus 152 G~yC~~~CnCvnC~N~~~~e~~r~~a~k~~l~RNP~AFkPKia~s~~~~~da~~~~~~~~~sa~hkkGC~CkkSgClKkY 231 (406)
T KOG1171|consen 152 GVYCTGPCNCVNCFNNPEHESVRLKARKQILERNPNAFKPKIAASSSGIADASEEASKTPASARHKKGCNCKKSGCLKKY 231 (406)
T ss_pred cccccCCcceeeccCCCcchHHHHHHHHHHhhcCccccccccccCCcccchhhhhhhccchhhhhcCCCCCccccchHHH
Confidence 999995 9999999999999999999999999999999999999999998888888888999999999999999999999
Q ss_pred hhhhhcCCccCCCCcccCCCCCCCcHHhhhhhcccccchhHHHHHhhhhhhhcccCCCCCCCCcccccccCcccccCCCC
Q 007469 213 CECFQANILCSENCRCMDCKNFEGSEERQALFHGDHANNMAYIQQAANAAITGAIGSSGYASPPVSKKRKGQELFFGSTA 292 (602)
Q Consensus 213 CECFqAgi~CS~~CKC~dCKN~e~seER~~l~~~~~~~~~~~~qq~~n~a~~g~~g~s~~~~~~~~rkrk~qe~~~~~~~ 292 (602)
|||||+|++|+++|||++|||+.+..+ ++.
T Consensus 232 CECyQa~vlCS~nCkC~~CkN~~g~~~-----------------------------s~~--------------------- 261 (406)
T KOG1171|consen 232 CECYQAGVLCSSNCKCQGCKNNFGYKD-----------------------------SKT--------------------- 261 (406)
T ss_pred HHHHhcCCCccccccCcCCccchhhcc-----------------------------ccc---------------------
Confidence 999999999999999999999222111 000
Q ss_pred CCCCCcccccccccCcCCCCCCCCCCCccccccCCccccCCCcccccccccccCCcccHHHHHHHHHHhhHHHHHHHHhh
Q 007469 293 KDPSIHRLGHFQQGNHIRTSPSSTLSSIPVARASSTAAVGSSKFTYRSLLADIIQPQDLKELCSVLVVLSSEAAKSVAVQ 372 (602)
Q Consensus 293 ~~~~~~~~~q~qq~n~~~~s~~ss~s~~~~~~~~~~~~~~~sk~~YRs~LAd~iqp~dV~~LcslLVvvs~eAakt~a~~ 372 (602)
+..+.++|+...|-.++.++...++.
T Consensus 262 ------------------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~ 287 (406)
T KOG1171|consen 262 ------------------------------------------------------QQPPTKALMSTPVESSGPAAQQNTEA 287 (406)
T ss_pred ------------------------------------------------------cCCchhhhcccccccccccccccccc
Confidence 33333444444443333333322221
Q ss_pred hhhhhhhhhhhcccCcCCchhhhcccCCCCCcccccccccccccccCCCCCCCCCCCCCCCCCCCCCCchhhhhcccccc
Q 007469 373 RNTTEKQAEDRAGTSVASSAQGRLQSHKEPDVDRTVTDDCSSANQADKVGPDDSGSDGSDGQKARPMSPGTLALMCDEQD 452 (602)
Q Consensus 373 k~~~~~~~~~~~e~~~as~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~D~~~~RP~SPgT~ALMCDEqD 452 (602)
. ......++...+... .+..+ .+..|+ +++++|-|++|||||.+
T Consensus 288 ~---------~~~~~~~~~~~~~~~---------------------~~~~l----p~~~~d--~~r~~~~~~~~~v~ea~ 331 (406)
T KOG1171|consen 288 R---------RKSDPPASPLPDNDP---------------------LLLHL----PDLSDD--GNRLPPNTLALEVDEAI 331 (406)
T ss_pred c---------cCCCCCCCCcccccc---------------------cccCC----cccccC--cCCCChHHHhhhhhhHH
Confidence 1 111111111111100 11112 222222 39999999999999999
Q ss_pred ccccccCCCCc-ccCCccCCCCCCCCCCchhhHHHHHHHHHHHhhHHHHHHHHhhhcccccccchhhhhhcCcc
Q 007469 453 TIFMAASSPNR-LTGHGCNTSSQLPYGQGMTEVYAEQERIVLTKFRDCLNRLITFGEIKEMKYSSLARTEVGSQ 525 (602)
Q Consensus 453 ~~F~~~~s~~~-~~~~~~~~~s~~p~~q~~sel~aeQEr~VLT~fRD~L~~lIt~G~ike~k~s~~a~~~~~~~ 525 (602)
+++|-+..+.. ... + .|.-.++|.+||++||++|+|||..+|.+.+|..-++-.+..+.++..
T Consensus 332 ~~cm~~~~~~~~~~e-------~---~~~~~~~~~~~e~~vl~~f~~cl~~~i~~~~~~~~~~~r~~~~~~~~~ 395 (406)
T KOG1171|consen 332 TICMLAQAEEAKPVE-------Q---SQNEGDKELEQEQLVLEEFGRCLEQIIPNITELSPDGDRASEDDPDVP 395 (406)
T ss_pred HHHHhhccccccchh-------h---cccccchhHHHHHHHHHHHHHHHhccccccceecccccccccccCCcc
Confidence 99987543332 111 1 111122999999999999999999999999999888765666666554
No 2
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=99.56 E-value=1.2e-15 Score=116.76 Aligned_cols=41 Identities=63% Similarity=1.392 Sum_probs=38.6
Q ss_pred CCcccccccCcCcccchhhhhhcCCccCCCCcccCCCCCCC
Q 007469 196 KHNKGCHCKKSGCLKKYCECFQANILCSENCRCMDCKNFEG 236 (602)
Q Consensus 196 kH~KGCnCKKS~CLKkYCECFqAgi~CS~~CKC~dCKN~e~ 236 (602)
++.+||+|+||+|||+|||||++|++|++.|+|.+|+|.++
T Consensus 1 ~~~~gC~Ckks~Clk~YC~Cf~~g~~C~~~C~C~~C~N~~~ 41 (42)
T PF03638_consen 1 KKKKGCNCKKSKCLKLYCECFQAGRFCTPNCKCQNCKNTEE 41 (42)
T ss_pred CCCCCCcccCcChhhhhCHHHHCcCcCCCCcccCCCCCcCC
Confidence 35789999999999999999999999999999999999864
No 3
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=99.55 E-value=1.6e-15 Score=116.03 Aligned_cols=41 Identities=63% Similarity=1.459 Sum_probs=38.0
Q ss_pred CCCCcccccCcccccchhhhhcCCCCCC-CCCCCCCCCChhh
Q 007469 111 KKQKQCNCKHSRCLKLYCECFASGIYCD-GCNCVNCHNNVEN 151 (602)
Q Consensus 111 kk~K~CnCKKSkCLKLYCECFAaG~yC~-~CnC~nC~Nn~En 151 (602)
++.++|+|+||+|||+|||||++|.+|+ .|+|.+|+|+.+|
T Consensus 1 ~~~~gC~Ckks~Clk~YC~Cf~~g~~C~~~C~C~~C~N~~~~ 42 (42)
T PF03638_consen 1 KKKKGCNCKKSKCLKLYCECFQAGRFCTPNCKCQNCKNTEEN 42 (42)
T ss_pred CCCCCCcccCcChhhhhCHHHHCcCcCCCCcccCCCCCcCCC
Confidence 3578999999999999999999999998 7999999999875
No 4
>KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism]
Probab=99.40 E-value=1.2e-13 Score=146.40 Aligned_cols=127 Identities=28% Similarity=0.552 Sum_probs=81.6
Q ss_pred CCCCcccccCcccccchhhhhcCCCCCC-CCCCCCCCCChhhHHHH-----HHHHHHH--------HhcCCCcCCcc---
Q 007469 111 KKQKQCNCKHSRCLKLYCECFASGIYCD-GCNCVNCHNNVENEAAR-----REAVEAT--------LERNPNAFRPK--- 173 (602)
Q Consensus 111 kk~K~CnCKKSkCLKLYCECFAaG~yC~-~CnC~nC~Nn~Ene~eR-----~eAIe~i--------L~RNP~AF~PK--- 173 (602)
+++++|+||||.|||.|||||++|+.|+ +|+|.+|+|+..+.+-- .++...+ +.+|-.+++..
T Consensus 215 ~hkkGC~CkkSgClKkYCECyQa~vlCS~nCkC~~CkN~~g~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 294 (406)
T KOG1171|consen 215 RHKKGCNCKKSGCLKKYCECYQAGVLCSSNCKCQGCKNNFGYKDSKTQQPPTKALMSTPVESSGPAAQQNTEARRKSDPP 294 (406)
T ss_pred hhcCCCCCccccchHHHHHHHhcCCCccccccCcCCccchhhccccccCCchhhhccccccccccccccccccccCCCCC
Confidence 6899999999999999999999999998 99999999954433220 1121111 22232222110
Q ss_pred ----------ccCCCCCCCC-Cc-------chhhhh----h---------hccCCcc--cccccCcCcccchhhhhhcCC
Q 007469 174 ----------IASSPHGTRD-NK-------EETGEV----L---------MLGKHNK--GCHCKKSGCLKKYCECFQANI 220 (602)
Q Consensus 174 ----------I~ss~~~~~~-s~-------~~~ge~----l---------~~~kH~K--GCnCKKS~CLKkYCECFqAgi 220 (602)
+...+.-..+ ++ .+.++. + +...+.. +|.++...||+.||+|+.+-|
T Consensus 295 ~~~~~~~~~~~~~lp~~~~d~~r~~~~~~~~~v~ea~~~cm~~~~~~~~~~e~~~~~~~~~~~~e~~vl~~f~~cl~~~i 374 (406)
T KOG1171|consen 295 ASPLPDNDPLLLHLPDLSDDGNRLPPNTLALEVDEAITICMLAQAEEAKPVEQSQNEGDKELEQEQLVLEEFGRCLEQII 374 (406)
T ss_pred CCCcccccccccCCcccccCcCCCChHHHhhhhhhHHHHHHhhccccccchhhcccccchhHHHHHHHHHHHHHHHhccc
Confidence 0000000000 00 000000 0 0112333 699999999999999999999
Q ss_pred ccCCCCcccCCCCCCCc
Q 007469 221 LCSENCRCMDCKNFEGS 237 (602)
Q Consensus 221 ~CS~~CKC~dCKN~e~s 237 (602)
-|...|+|.+|++.++.
T Consensus 375 ~~~~~~~~~~~r~~~~~ 391 (406)
T KOG1171|consen 375 PNITELSPDGDRASEDD 391 (406)
T ss_pred cccceeccccccccccc
Confidence 99999999999999763
No 5
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=95.75 E-value=0.0046 Score=70.36 Aligned_cols=62 Identities=34% Similarity=0.967 Sum_probs=52.6
Q ss_pred CCCCcccccCcccccchhhhhcCCCCCC-CCCCC-CCCCChhhHHHHHHHHHHHHhcCCCcCCccccCCCCCCCCCcchh
Q 007469 111 KKQKQCNCKHSRCLKLYCECFASGIYCD-GCNCV-NCHNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDNKEET 188 (602)
Q Consensus 111 kk~K~CnCKKSkCLKLYCECFAaG~yC~-~CnC~-nC~Nn~Ene~eR~eAIe~iL~RNP~AF~PKI~ss~~~~~~s~~~~ 188 (602)
.+-.+|||-+ -|.|-..+.+|. .|.|. +|.|..
T Consensus 505 ~hp~~c~c~~------~C~C~~n~~~CEk~C~C~~dC~nrF--------------------------------------- 539 (739)
T KOG1079|consen 505 DHPGPCNCGV------GCPCIDNETFCEKFCYCSPDCRNRF--------------------------------------- 539 (739)
T ss_pred cCCCCCCCCC------CCcccccCcchhhcccCCHHHHhcC---------------------------------------
Confidence 4556777555 499999999998 89999 888842
Q ss_pred hhhhhccCCcccccccCcCcccchhhhhhcCCccC-CCCcc
Q 007469 189 GEVLMLGKHNKGCHCKKSGCLKKYCECFQANILCS-ENCRC 228 (602)
Q Consensus 189 ge~l~~~kH~KGCnCKKS~CLKkYCECFqAgi~CS-~~CKC 228 (602)
.||+| |+.|--|-|-||+|..-|. ..|.+
T Consensus 540 ----------~GC~C-k~QC~tkqCpC~~A~rECdPd~Cl~ 569 (739)
T KOG1079|consen 540 ----------PGCRC-KAQCNTKQCPCYLAVRECDPDVCLM 569 (739)
T ss_pred ----------CCCCc-ccccccCcCchhhhccccCchHHhc
Confidence 49999 9999999999999999999 78877
No 6
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=74.48 E-value=2.8 Score=36.27 Aligned_cols=38 Identities=39% Similarity=1.041 Sum_probs=22.6
Q ss_pred CCcccccccCcCc-ccchhhhhhcCC--------------------ccCCCCccc-CCCCC
Q 007469 196 KHNKGCHCKKSGC-LKKYCECFQANI--------------------LCSENCRCM-DCKNF 234 (602)
Q Consensus 196 kH~KGCnCKKS~C-LKkYCECFqAgi--------------------~CS~~CKC~-dCKN~ 234 (602)
....||.| ...| ....|+|.+... -|++.|+|- .|.|+
T Consensus 44 ~~~~~C~C-~~~C~~~~~C~C~~~~~~~~~Y~~~g~l~~~~~~~i~EC~~~C~C~~~C~NR 103 (103)
T PF05033_consen 44 EFLQGCDC-SGDCSNPSNCECLQRNGGIFAYDSNGRLRIPDKPPIFECNDNCGCSPSCRNR 103 (103)
T ss_dssp GGTS-----SSSSTCTTTSHHHCCTSSS-SB-TTSSBSSSSTSEEE---TTSSS-TTSTT-
T ss_pred ccCccCcc-CCCCCCCCCCcCccccCccccccCCCcCccCCCCeEEeCCCCCCCCCCCCCC
Confidence 34579999 5569 789999986663 299999995 88884
No 7
>KOG3813 consensus Uncharacterized conserved protein (tumor-suppressor AXUD1 in humans) [General function prediction only]
Probab=69.52 E-value=1.9 Score=48.90 Aligned_cols=43 Identities=37% Similarity=0.860 Sum_probs=36.7
Q ss_pred ccCCcccccccCcCcccchhhhhhcCCccCC-----CCcc--cCCCCCCCc
Q 007469 194 LGKHNKGCHCKKSGCLKKYCECFQANILCSE-----NCRC--MDCKNFEGS 237 (602)
Q Consensus 194 ~~kH~KGCnCKKS~CLKkYCECFqAgi~CS~-----~CKC--~dCKN~e~s 237 (602)
..|...||+|+ -.|.--.|-|-||||+|-. -|-| .+|-|.+|.
T Consensus 303 nSReeCGCsCr-~~CdPETCaCSqaGIkCQvDr~~fPCgC~rEgCgNp~GR 352 (640)
T KOG3813|consen 303 NSREECGCSCR-GVCDPETCACSQAGIKCQVDRGEFPCGCFREGCGNPEGR 352 (640)
T ss_pred hhHHhhCCccc-ceeChhhcchhccCceEeecCcccccccchhhcCCCccc
Confidence 34566799999 8999999999999999975 4888 699999773
No 8
>PF11430 EGL-1: Programmed cell death activator EGL-1; InterPro: IPR021543 Initiation of programmed cell death in C.elegans occurs by the binding of EGL-1 to CED-9 which disrupts a complex involving CED-4/CED-9 and allows CED-4 to activate CED-3, a caspase. It is the C-terminal domain of EGL-1 which is involved in the formation of the complex with CED-9. The formation of the complex induces structural rearrangements in CED-9 and EGL-1 adopts an extended alpha-helical conformation []. ; PDB: 1TY4_D.
Probab=44.05 E-value=4.4 Score=27.88 Aligned_cols=13 Identities=54% Similarity=0.879 Sum_probs=10.7
Q ss_pred hhhcccccccccc
Q 007469 444 LALMCDEQDTIFM 456 (602)
Q Consensus 444 ~ALMCDEqD~~F~ 456 (602)
||-|||+-|.-.|
T Consensus 7 la~MCDdFD~emM 19 (21)
T PF11430_consen 7 LAAMCDDFDAEMM 19 (21)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7899999997655
No 9
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=38.68 E-value=12 Score=43.75 Aligned_cols=34 Identities=29% Similarity=0.788 Sum_probs=26.8
Q ss_pred CCcccccCcccccchhhhhcCCCCCCCCCCCCCCC
Q 007469 113 QKQCNCKHSRCLKLYCECFASGIYCDGCNCVNCHN 147 (602)
Q Consensus 113 ~K~CnCKKSkCLKLYCECFAaG~yC~~CnC~nC~N 147 (602)
-.||+| +++|--.-|.||+|..-|+-=-|..|.|
T Consensus 539 F~GC~C-k~QC~tkqCpC~~A~rECdPd~Cl~cg~ 572 (739)
T KOG1079|consen 539 FPGCRC-KAQCNTKQCPCYLAVRECDPDVCLMCGN 572 (739)
T ss_pred CCCCCc-ccccccCcCchhhhccccCchHHhccCc
Confidence 458999 9999999999999999998333333443
No 10
>COG3097 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.36 E-value=28 Score=32.11 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=22.0
Q ss_pred CCchhhHHHHHHHHHHHhhHHHHHHH
Q 007469 478 GQGMTEVYAEQERIVLTKFRDCLNRL 503 (602)
Q Consensus 478 ~q~~sel~aeQEr~VLT~fRD~L~~l 503 (602)
=+.++|.+||||+.-|.+++..+..+
T Consensus 63 ld~l~e~HAeQEnm~L~eLk~vI~eI 88 (106)
T COG3097 63 LDELTEKHAEQENMTLPELKKVIAEI 88 (106)
T ss_pred hhhhhhhhhhhhcCCcHHHHHHHHHH
Confidence 56789999999999999988776654
No 11
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=26.56 E-value=1e+02 Score=37.47 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=14.0
Q ss_pred CCchhhHHHHHHHHHHHhhHHHHHHHHhh
Q 007469 478 GQGMTEVYAEQERIVLTKFRDCLNRLITF 506 (602)
Q Consensus 478 ~q~~sel~aeQEr~VLT~fRD~L~~lIt~ 506 (602)
...+-|+++. |..||+-.-.++.-
T Consensus 972 kysmEEFFaD-----i~tFrnaf~ea~~e 995 (1102)
T KOG1924|consen 972 KYSMEEFFAD-----IRTFRNAFLEAVAE 995 (1102)
T ss_pred cCcHHHHHHH-----HHHHHHHHHHHHHH
Confidence 4445666664 56677766555543
No 12
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=23.75 E-value=1.3e+02 Score=36.77 Aligned_cols=7 Identities=29% Similarity=0.344 Sum_probs=3.3
Q ss_pred hhHHHHH
Q 007469 251 NMAYIQQ 257 (602)
Q Consensus 251 ~~~~~qq 257 (602)
....|||
T Consensus 731 se~~iqn 737 (1102)
T KOG1924|consen 731 SESMIQN 737 (1102)
T ss_pred HHHHHHH
Confidence 3444554
No 13
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=23.52 E-value=51 Score=29.70 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=12.7
Q ss_pred HHHHHHHhhHHHHHHH
Q 007469 354 LCSVLVVLSSEAAKSV 369 (602)
Q Consensus 354 LcslLVvvs~eAakt~ 369 (602)
|+.||+|.|..||..+
T Consensus 13 LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 13 LAALLLISSEVAAREL 28 (95)
T ss_pred HHHHHHHHhhhhhHHh
Confidence 6788888888888776
No 14
>KOG3813 consensus Uncharacterized conserved protein (tumor-suppressor AXUD1 in humans) [General function prediction only]
Probab=20.26 E-value=56 Score=37.74 Aligned_cols=44 Identities=34% Similarity=0.832 Sum_probs=35.3
Q ss_pred CCCcccccCcccccchhhhhcCCCCC--C----CCCCC--CCCCCh---hhHHHHH
Q 007469 112 KQKQCNCKHSRCLKLYCECFASGIYC--D----GCNCV--NCHNNV---ENEAARR 156 (602)
Q Consensus 112 k~K~CnCKKSkCLKLYCECFAaG~yC--~----~CnC~--nC~Nn~---Ene~eR~ 156 (602)
.-.+|.|. -.|+--.|-|-.+|+.| + -|.|. .|.|.. ++..+|.
T Consensus 306 eeCGCsCr-~~CdPETCaCSqaGIkCQvDr~~fPCgC~rEgCgNp~GRveFNp~rV 360 (640)
T KOG3813|consen 306 EECGCSCR-GVCDPETCACSQAGIKCQVDRGEFPCGCFREGCGNPEGRVEFNPERV 360 (640)
T ss_pred HhhCCccc-ceeChhhcchhccCceEeecCcccccccchhhcCCCccceecCHHHH
Confidence 46799999 89999999999999999 3 48886 899976 4444443
Done!