Query 007469
Match_columns 602
No_of_seqs 163 out of 447
Neff 3.3
Searched_HMMs 29240
Date Tue Mar 26 02:37:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007469.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007469hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lua_A Protein MALE-specific l 96.1 0.0034 1.2E-07 49.8 3.2 38 198-236 4-48 (52)
2 2lua_A Protein MALE-specific l 95.3 0.01 3.5E-07 47.1 3.0 36 113-148 4-46 (52)
3 3bo5_A Histone-lysine N-methyl 81.6 0.75 2.6E-05 46.2 3.0 36 199-234 60-118 (290)
4 1mvh_A Cryptic LOCI regulator 66.1 2.7 9.4E-05 42.3 2.5 38 197-234 65-129 (299)
5 3hna_A Histone-lysine N-methyl 59.5 3.9 0.00013 41.0 2.2 37 198-235 80-140 (287)
6 3bo5_A Histone-lysine N-methyl 51.1 9.2 0.00032 38.3 3.3 22 114-135 60-81 (290)
7 1ml9_A Histone H3 methyltransf 50.3 9.5 0.00033 38.2 3.3 22 197-218 46-68 (302)
8 2hv8_D RAB11 family-interactin 40.8 18 0.0006 29.8 2.9 27 479-506 26-52 (64)
9 2li3_A Potassium channel toxin 40.8 4.8 0.00016 28.6 -0.4 25 206-230 2-30 (30)
10 2d7c_C RAB11 family-interactin 30.1 36 0.0012 25.9 2.9 25 481-506 6-30 (42)
11 3h6l_A Histone-lysine N-methyl 29.1 28 0.00094 34.8 2.7 36 199-235 64-110 (278)
12 1mvh_A Cryptic LOCI regulator 25.4 33 0.0011 34.5 2.5 38 113-150 66-131 (299)
13 3hna_A Histone-lysine N-methyl 25.2 23 0.00078 35.5 1.3 36 113-149 80-140 (287)
14 1bbg_A Pollen allergen 5; prot 23.8 3.2 0.00011 31.2 -3.8 17 210-226 23-39 (40)
15 3ope_A Probable histone-lysine 21.0 54 0.0018 31.3 2.9 36 198-234 22-65 (222)
16 1ml9_A Histone H3 methyltransf 20.2 67 0.0023 32.1 3.5 20 113-132 47-67 (302)
No 1
>2lua_A Protein MALE-specific lethal-2; DNA binding protein, metal binding; NMR {Drosophila melanogaster}
Probab=96.11 E-value=0.0034 Score=49.77 Aligned_cols=38 Identities=32% Similarity=0.922 Sum_probs=32.4
Q ss_pred cccccccCc-------CcccchhhhhhcCCccCCCCcccCCCCCCC
Q 007469 198 NKGCHCKKS-------GCLKKYCECFQANILCSENCRCMDCKNFEG 236 (602)
Q Consensus 198 ~KGCnCKKS-------~CLKkYCECFqAgi~CS~~CKC~dCKN~e~ 236 (602)
.++|.|-.+ .|-...|-||.++..|+ +|+|.+|+|-..
T Consensus 4 k~~CrCG~~~~~~~~~TC~~~RCpCY~~~~sC~-~C~C~GCkNPhk 48 (52)
T 2lua_A 4 KPKCRCGISGSSNTLTTCRNSRCPCYKSYNSCA-GCHCVGCKNPHK 48 (52)
T ss_dssp CCCCCBTTBSCCCSSSTTTSTTCHHHHTTCCCS-SCCCSSCCCSCC
T ss_pred CcccccCcccCCCCceeEcCCccceecCCCccC-CCEecCcCCCCc
Confidence 478888444 79999999999999998 599999999743
No 2
>2lua_A Protein MALE-specific lethal-2; DNA binding protein, metal binding; NMR {Drosophila melanogaster}
Probab=95.29 E-value=0.01 Score=47.08 Aligned_cols=36 Identities=39% Similarity=1.037 Sum_probs=31.1
Q ss_pred CCcccccCc-------ccccchhhhhcCCCCCCCCCCCCCCCC
Q 007469 113 QKQCNCKHS-------RCLKLYCECFASGIYCDGCNCVNCHNN 148 (602)
Q Consensus 113 ~K~CnCKKS-------kCLKLYCECFAaG~yC~~CnC~nC~Nn 148 (602)
++.|.|-.+ .|--.-|.||.+|.-|.+|+|.+|+|.
T Consensus 4 k~~CrCG~~~~~~~~~TC~~~RCpCY~~~~sC~~C~C~GCkNP 46 (52)
T 2lua_A 4 KPKCRCGISGSSNTLTTCRNSRCPCYKSYNSCAGCHCVGCKNP 46 (52)
T ss_dssp CCCCCBTTBSCCCSSSTTTSTTCHHHHTTCCCSSCCCSSCCCS
T ss_pred CcccccCcccCCCCceeEcCCccceecCCCccCCCEecCcCCC
Confidence 456888544 688899999999999999999999996
No 3
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}
Probab=81.55 E-value=0.75 Score=46.18 Aligned_cols=36 Identities=39% Similarity=1.002 Sum_probs=29.0
Q ss_pred ccccccCcCcccchhhhhhcCC----------------------ccCCCCcc-cCCCCC
Q 007469 199 KGCHCKKSGCLKKYCECFQANI----------------------LCSENCRC-MDCKNF 234 (602)
Q Consensus 199 KGCnCKKS~CLKkYCECFqAgi----------------------~CS~~CKC-~dCKN~ 234 (602)
.||+|.+..|....|.|++.+. -|+..|.| ..|.|.
T Consensus 60 ~gC~C~~~~C~~~~C~C~~~~~~y~~~~~l~~~~~~~~~~~~~~EC~~~C~C~~~C~Nr 118 (290)
T 3bo5_A 60 PGCICVKTPCLPGTCSCLRHGENYDDNSCLRDIGSGGKYAEPVFECNVLCRCSDHCRNR 118 (290)
T ss_dssp CCCCCCSSCCCTTTCGGGTTSCSBCTTSCBCC-----CCCCCEECCCTTCCSCTTCTTC
T ss_pred CCCCCCCCCcCCCCCcchhhcCccCccccccccccccccCCceEeCCCCCCCCCCCCCe
Confidence 6999999999999999998753 26667777 578776
No 4
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A
Probab=66.07 E-value=2.7 Score=42.30 Aligned_cols=38 Identities=37% Similarity=1.016 Sum_probs=30.7
Q ss_pred CcccccccC-cCccc---chhhhhhcC----------------------CccCCCCcc-cCCCCC
Q 007469 197 HNKGCHCKK-SGCLK---KYCECFQAN----------------------ILCSENCRC-MDCKNF 234 (602)
Q Consensus 197 H~KGCnCKK-S~CLK---kYCECFqAg----------------------i~CS~~CKC-~dCKN~ 234 (602)
+..||+|+. ..|.. .-|+|.+.. .-|++.|+| ..|.|.
T Consensus 65 ~~~gC~C~~~~~C~~~~~~~C~C~~~~~~~~~~~y~~~g~l~~~~~~~i~EC~~~C~C~~~C~Nr 129 (299)
T 1mvh_A 65 FQSGCNCSSLGGCDLNNPSRCECLDDLDEPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECPNR 129 (299)
T ss_dssp GCCCCCCCCSSSSCTTCTTTCSSSTTCCSSCCCSBCTTSSBCTTCCSEEECCCTTSCSCTTCTTC
T ss_pred CCCCCcCcCCCCcCCCCCCCCccccccccccccccCCCCceeecCCCCeEeCCCCCCCCCCcCCc
Confidence 347999986 58997 789998654 469999999 489987
No 5
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*
Probab=59.53 E-value=3.9 Score=41.02 Aligned_cols=37 Identities=30% Similarity=0.786 Sum_probs=29.7
Q ss_pred cccccccCcCcccchhhhhhcC-----------------------CccCCCCcc-cCCCCCC
Q 007469 198 NKGCHCKKSGCLKKYCECFQAN-----------------------ILCSENCRC-MDCKNFE 235 (602)
Q Consensus 198 ~KGCnCKKS~CLKkYCECFqAg-----------------------i~CS~~CKC-~dCKN~e 235 (602)
..||.|+ ..|...-|.|.+.+ +-|+..|.| ..|.|.-
T Consensus 80 ~~gC~C~-~~C~~~~C~C~~~~~~~~y~~~g~l~~~~~~~~~~~i~EC~~~C~C~~~C~Nr~ 140 (287)
T 3hna_A 80 LQYCVCI-DDCSSSNCMCGQLSMRCWYDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRV 140 (287)
T ss_dssp CCCCCCS-SSSCSTTCHHHHHTSSCCBCTTSCBCTTCCSSSCCCEECCCTTSSSCTTCSSCS
T ss_pred CCCCcCc-CCCCCCCCcCcccCcccccCCCCcccccccccCCceEEecCCCCCCCCCCCCcc
Confidence 4699998 47999899998632 358999999 5899983
No 6
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}
Probab=51.11 E-value=9.2 Score=38.32 Aligned_cols=22 Identities=32% Similarity=0.833 Sum_probs=18.7
Q ss_pred CcccccCcccccchhhhhcCCC
Q 007469 114 KQCNCKHSRCLKLYCECFASGI 135 (602)
Q Consensus 114 K~CnCKKSkCLKLYCECFAaG~ 135 (602)
.+|+|....|...-|.|+..+.
T Consensus 60 ~gC~C~~~~C~~~~C~C~~~~~ 81 (290)
T 3bo5_A 60 PGCICVKTPCLPGTCSCLRHGE 81 (290)
T ss_dssp CCCCCCSSCCCTTTCGGGTTSC
T ss_pred CCCCCCCCCcCCCCCcchhhcC
Confidence 5999999999988999997653
No 7
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Probab=50.29 E-value=9.5 Score=38.20 Aligned_cols=22 Identities=27% Similarity=0.988 Sum_probs=17.4
Q ss_pred CcccccccCc-Ccccchhhhhhc
Q 007469 197 HNKGCHCKKS-GCLKKYCECFQA 218 (602)
Q Consensus 197 H~KGCnCKKS-~CLKkYCECFqA 218 (602)
...||+|... .|...-|.|.+.
T Consensus 46 ~~~gC~C~~~~~C~~~~C~C~~~ 68 (302)
T 1ml9_A 46 FRVGCSCASDEECMYSTCQCLDE 68 (302)
T ss_dssp GCCCCCCSSTTGGGSTTSGGGTT
T ss_pred cCCCccCcCCCCcCCCCCcChhh
Confidence 3479999874 798888999763
No 8
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=40.81 E-value=18 Score=29.78 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=22.8
Q ss_pred CchhhHHHHHHHHHHHhhHHHHHHHHhh
Q 007469 479 QGMTEVYAEQERIVLTKFRDCLNRLITF 506 (602)
Q Consensus 479 q~~sel~aeQEr~VLT~fRD~L~~lIt~ 506 (602)
+++-+...+||. +...+|||+.+|+.+
T Consensus 26 deL~~~l~eqee-~n~~Le~YID~LL~~ 52 (64)
T 2hv8_D 26 DELMEAIQKQEE-INFRLQDYIDRIIVA 52 (64)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 456778889999 789999999999864
No 9
>2li3_A Potassium channel toxin kappa-KTX3.1; alpha/alpha motif, alpha scorpion toxin, voltage gated potas channel alpha toxin; NMR {Tityus trivittatus} PDB: 2lka_A 2lo7_A
Probab=40.75 E-value=4.8 Score=28.59 Aligned_cols=25 Identities=40% Similarity=1.039 Sum_probs=19.5
Q ss_pred cCcccchhhhhhcCC----ccCCCCcccC
Q 007469 206 SGCLKKYCECFQANI----LCSENCRCMD 230 (602)
Q Consensus 206 S~CLKkYCECFqAgi----~CS~~CKC~d 230 (602)
|+|.+-||.=+-.+. +|-.+|||+.
T Consensus 2 sgc~peyca~~cr~kvsq~yclknckc~~ 30 (30)
T 2li3_A 2 SGCMPEYCAGQCRGKVSQDYCLKNCRCIR 30 (30)
T ss_dssp CSSCHHHHHHHSCTTHHHHHHHHHSCCCC
T ss_pred CCcchhHhhhheeeeechHHHHhcCcCCC
Confidence 789999998664443 7889999974
No 10
>2d7c_C RAB11 family-interacting protein 3; GTP-ASE, coiled-coil, protein transport; HET: GTP MES; 1.75A {Homo sapiens} SCOP: h.1.31.1
Probab=30.09 E-value=36 Score=25.88 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHHhh
Q 007469 481 MTEVYAEQERIVLTKFRDCLNRLITF 506 (602)
Q Consensus 481 ~sel~aeQEr~VLT~fRD~L~~lIt~ 506 (602)
+-++-.+||. +...+|||+..|+-+
T Consensus 6 L~~~l~~qee-~n~~Le~YID~LL~~ 30 (42)
T 2d7c_C 6 LMEAIQKQEE-INFRLQDYIDRIIVA 30 (42)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3456678888 779999999999753
No 11
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing protein 2, S-adenos methionine, structural genomics, structural genomics consor SGC; HET: SAM; 1.99A {Homo sapiens} PDB: 4fmu_A* 4h12_A*
Probab=29.10 E-value=28 Score=34.85 Aligned_cols=36 Identities=28% Similarity=0.502 Sum_probs=29.7
Q ss_pred ccccccCc----------CcccchhhhhhcCCccCCCCcc-cCCCCCC
Q 007469 199 KGCHCKKS----------GCLKKYCECFQANILCSENCRC-MDCKNFE 235 (602)
Q Consensus 199 KGCnCKKS----------~CLKkYCECFqAgi~CS~~CKC-~dCKN~e 235 (602)
--|+|+.. .|-. -|.+...-+-|+..|.| ..|.|.-
T Consensus 64 ~~C~C~~~~~~~~~~~~~~C~~-~C~nr~~~~EC~~~C~C~~~C~Nr~ 110 (278)
T 3h6l_A 64 MQCECTPLSKDERAQGEIACGE-DCLNRLLMIECSSRCPNGDYCSNRR 110 (278)
T ss_dssp -CCCCCCCCHHHHHHTCCSSCT-TCTTGGGTBCCCTTCTTGGGCSSCT
T ss_pred ceeeccCCCcccccccCCCCCC-CCCCcceEeccCCCCCcCCCCCCcc
Confidence 36999863 7876 59999999999999999 6899984
No 12
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A
Probab=25.45 E-value=33 Score=34.46 Aligned_cols=38 Identities=37% Similarity=0.865 Sum_probs=28.5
Q ss_pred CCcccccC-ccccc---chhhhhcCC----------------------CCCC-CCCCC-CCCCChh
Q 007469 113 QKQCNCKH-SRCLK---LYCECFASG----------------------IYCD-GCNCV-NCHNNVE 150 (602)
Q Consensus 113 ~K~CnCKK-SkCLK---LYCECFAaG----------------------~yC~-~CnC~-nC~Nn~E 150 (602)
..+|+|.. ..|+. .-|+|.... .-|+ .|.|. .|.|+.-
T Consensus 66 ~~gC~C~~~~~C~~~~~~~C~C~~~~~~~~~~~y~~~g~l~~~~~~~i~EC~~~C~C~~~C~Nr~~ 131 (299)
T 1mvh_A 66 QSGCNCSSLGGCDLNNPSRCECLDDLDEPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECPNRVV 131 (299)
T ss_dssp CCCCCCCCSSSSCTTCTTTCSSSTTCCSSCCCSBCTTSSBCTTCCSEEECCCTTSCSCTTCTTCTG
T ss_pred CCCCcCcCCCCcCCCCCCCCccccccccccccccCCCCceeecCCCCeEeCCCCCCCCCCcCCccc
Confidence 46899986 58987 789997442 2387 89997 8999763
No 13
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*
Probab=25.22 E-value=23 Score=35.48 Aligned_cols=36 Identities=39% Similarity=1.028 Sum_probs=27.1
Q ss_pred CCcccccCcccccchhhhhcC---------C-------------CC-CC-CCCCC-CCCCCh
Q 007469 113 QKQCNCKHSRCLKLYCECFAS---------G-------------IY-CD-GCNCV-NCHNNV 149 (602)
Q Consensus 113 ~K~CnCKKSkCLKLYCECFAa---------G-------------~y-C~-~CnC~-nC~Nn~ 149 (602)
-.+|.|+. .|...-|.|... | +| |+ .|.|. .|.|+.
T Consensus 80 ~~gC~C~~-~C~~~~C~C~~~~~~~~y~~~g~l~~~~~~~~~~~i~EC~~~C~C~~~C~Nr~ 140 (287)
T 3hna_A 80 LQYCVCID-DCSSSNCMCGQLSMRCWYDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRV 140 (287)
T ss_dssp CCCCCCSS-SSCSTTCHHHHHTSSCCBCTTSCBCTTCCSSSCCCEECCCTTSSSCTTCSSCS
T ss_pred CCCCcCcC-CCCCCCCcCcccCcccccCCCCcccccccccCCceEEecCCCCCCCCCCCCcc
Confidence 45899984 698888999841 1 33 87 89996 899975
No 14
>1bbg_A Pollen allergen 5; protein allergen, small highly disulfide bonded; NMR {Ambrosia trifida} SCOP: g.6.1.1 PDB: 2bbg_A 3bbg_A
Probab=23.77 E-value=3.2 Score=31.15 Aligned_cols=17 Identities=41% Similarity=1.366 Sum_probs=14.5
Q ss_pred cchhhhhhcCCccCCCC
Q 007469 210 KKYCECFQANILCSENC 226 (602)
Q Consensus 210 KkYCECFqAgi~CS~~C 226 (602)
-+||.||.....|+.+|
T Consensus 23 GrYCVCYeS~~IC~Knc 39 (40)
T 1bbg_A 23 GKYCVCYDSKAICNKNC 39 (40)
T ss_dssp SSSCEEESSHHHHHHHH
T ss_pred CceEEEechHHhhhccC
Confidence 38999999998888776
No 15
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}
Probab=21.01 E-value=54 Score=31.28 Aligned_cols=36 Identities=36% Similarity=0.806 Sum_probs=29.9
Q ss_pred cccccccCc------CcccchhhhhhcCCccCC-CCcc-cCCCCC
Q 007469 198 NKGCHCKKS------GCLKKYCECFQANILCSE-NCRC-MDCKNF 234 (602)
Q Consensus 198 ~KGCnCKKS------~CLKkYCECFqAgi~CS~-~CKC-~dCKN~ 234 (602)
.-.|+|+.. +|.. -|.+....+-|+. .|.| ..|.|.
T Consensus 22 ~~~C~C~~~~~~~~~~c~~-~C~nr~~~~EC~~~~C~C~~~C~Nr 65 (222)
T 3ope_A 22 ATTCNCKKPDDDTRKGCVD-DCLNRMIFAECSPNTCPCGEQCCNQ 65 (222)
T ss_dssp CCCCCCCCCSCSSSCSSCS-CCTTGGGTBCCCTTTCTTTTSCSSC
T ss_pred CccccCcCCCcCCCCCCcc-cCcCcCeEeEeCCCCCcCCCCCCCc
Confidence 467999874 7874 7888999999997 8999 689997
No 16
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Probab=20.22 E-value=67 Score=32.07 Aligned_cols=20 Identities=25% Similarity=0.959 Sum_probs=15.9
Q ss_pred CCcccccCc-ccccchhhhhc
Q 007469 113 QKQCNCKHS-RCLKLYCECFA 132 (602)
Q Consensus 113 ~K~CnCKKS-kCLKLYCECFA 132 (602)
..+|+|... .|+..-|.|..
T Consensus 47 ~~gC~C~~~~~C~~~~C~C~~ 67 (302)
T 1ml9_A 47 RVGCSCASDEECMYSTCQCLD 67 (302)
T ss_dssp CCCCCCSSTTGGGSTTSGGGT
T ss_pred CCCccCcCCCCcCCCCCcChh
Confidence 468999873 79888899974
Done!