BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007471
(602 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P32812|YGL1_GEOSE Uncharacterized protein in gldA 5'region (Fragment) OS=Geobacillus
stearothermophilus PE=4 SV=1
Length = 97
Score = 33.5 bits (75), Expect = 4.5, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 260 TYADNAEALRMTTWMVEYFYNRVQNVIKKYSIE-----RHWQTLNEEAGGMNDVLYKL 312
T+A+ E L+ W+ + ++RV N+IK IE + ++ N+E G+++ L +L
Sbjct: 22 TFAEYLEILKEKPWIAQSAHSRVYNMIKDAGIEEINGRKRYKFFNQEIFGLDEALERL 79
>sp|Q38VV4|SYFB_LACSS Phenylalanine--tRNA ligase beta subunit OS=Lactobacillus sakei
subsp. sakei (strain 23K) GN=pheT PE=3 SV=1
Length = 806
Score = 33.1 bits (74), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 16/136 (11%)
Query: 21 VSAAQAKECTNAYPELASHTFRSNLLSSKNESYIKQIHSHNDHLTPSDDSAWLSLMPRKI 80
+ AA A + T+AYPE+ + + + QIH T ++ L KI
Sbjct: 640 LQAAVAYQATDAYPEMHPGRTAAIYVGETFVGIVGQIHPKIAKATHLKETYIFELDLAKI 699
Query: 81 LREEEQDELFSWAMLYRKIKNPGQFKVP-------------ERSGEFLKEVSLHDVRLGS 127
L + Q + A + ++ +VP E+ G +L VSL DV GS
Sbjct: 700 LELQRQTIIAKPAPKFPEVTRDIALQVPEAITNADLVNAIKEKGGRYLVSVSLFDVYAGS 759
Query: 128 DSMHWRAQQTNLEYLL 143
H A + ++ Y L
Sbjct: 760 ---HIEAGEKSMAYTL 772
>sp|Q9PQL3|SYR_UREPA Arginine--tRNA ligase OS=Ureaplasma parvum serovar 3 (strain ATCC
700970) GN=argS PE=3 SV=1
Length = 550
Score = 32.7 bits (73), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 93 AMLYRKIKNPGQFKVPERSGEFLKEVSLHDVRLGSDSMHWRAQQTNLEYLLMLDVD 148
A + + +KN +FK+ +RSG+ L L ++ +G D++ W +++ +++DVD
Sbjct: 367 AQVMKLVKNNQEFKLSKRSGQSLTIKDLVEI-IGKDALRWFLGSSSMNSHVIIDVD 421
>sp|B1AIR8|SYR_UREP2 Arginine--tRNA ligase OS=Ureaplasma parvum serovar 3 (strain ATCC
27815 / 27 / NCTC 11736) GN=argS PE=3 SV=1
Length = 550
Score = 32.7 bits (73), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 93 AMLYRKIKNPGQFKVPERSGEFLKEVSLHDVRLGSDSMHWRAQQTNLEYLLMLDVD 148
A + + +KN +FK+ +RSG+ L L ++ +G D++ W +++ +++DVD
Sbjct: 367 AQVMKLVKNNQEFKLSKRSGQSLTIKDLVEI-IGKDALRWFLGSSSMNSHVIIDVD 421
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 236,414,475
Number of Sequences: 539616
Number of extensions: 10122349
Number of successful extensions: 21676
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 21673
Number of HSP's gapped (non-prelim): 7
length of query: 602
length of database: 191,569,459
effective HSP length: 123
effective length of query: 479
effective length of database: 125,196,691
effective search space: 59969214989
effective search space used: 59969214989
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)