Query 007471
Match_columns 602
No_of_seqs 228 out of 856
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 00:03:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007471.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007471hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07944 DUF1680: Putative gly 100.0 3E-100 7E-105 850.3 43.8 456 122-601 1-477 (520)
2 COG3533 Uncharacterized protei 100.0 1.2E-97 3E-102 782.7 32.1 449 115-600 9-460 (589)
3 cd00249 AGE AGE domain; N-acyl 99.0 1.3E-07 2.8E-12 101.8 24.7 274 182-468 55-353 (384)
4 cd00249 AGE AGE domain; N-acyl 98.3 3.1E-05 6.7E-10 83.4 19.6 251 205-467 16-289 (384)
5 PF07944 DUF1680: Putative gly 98.1 0.00013 2.7E-09 82.5 17.4 189 246-450 61-267 (520)
6 COG1331 Highly conserved prote 97.9 0.00052 1.1E-08 77.9 18.9 249 184-454 277-574 (667)
7 PF03663 Glyco_hydro_76: Glyco 97.9 7.4E-05 1.6E-09 80.9 11.4 182 246-449 37-253 (370)
8 PF03663 Glyco_hydro_76: Glyco 97.9 0.00012 2.7E-09 79.2 12.7 185 182-385 38-256 (370)
9 cd04791 LanC_SerThrkinase Lant 97.9 0.0007 1.5E-08 71.1 17.6 171 252-454 89-277 (321)
10 PF07470 Glyco_hydro_88: Glyco 97.8 0.0018 3.9E-08 69.0 19.0 240 182-459 27-293 (336)
11 cd04791 LanC_SerThrkinase Lant 97.6 0.0013 2.7E-08 69.1 15.0 181 185-385 88-276 (321)
12 PF07221 GlcNAc_2-epim: N-acyl 97.5 0.00099 2.1E-08 71.1 13.1 258 182-453 23-314 (346)
13 PF07221 GlcNAc_2-epim: N-acyl 97.3 0.0019 4.1E-08 68.9 11.5 192 184-384 85-309 (346)
14 cd04792 LanM-like LanM-like pr 97.1 0.019 4.1E-07 68.5 18.9 215 189-449 550-779 (825)
15 PTZ00470 glycoside hydrolase f 97.1 0.015 3.4E-07 65.5 16.9 78 251-329 160-251 (522)
16 COG3533 Uncharacterized protei 97.1 0.0032 6.9E-08 69.0 10.6 129 176-329 123-257 (589)
17 cd04434 LanC_like LanC-like pr 96.9 0.097 2.1E-06 54.7 19.5 218 188-453 58-301 (343)
18 PF06662 C5-epim_C: D-glucuron 96.6 0.021 4.6E-07 56.1 11.3 146 169-329 25-188 (189)
19 COG1331 Highly conserved prote 96.6 0.029 6.2E-07 64.2 13.4 138 183-330 414-565 (667)
20 cd04792 LanM-like LanM-like pr 96.5 0.13 2.9E-06 61.4 19.1 229 182-448 489-733 (825)
21 COG4403 LcnDR2 Lantibiotic mod 96.3 0.029 6.2E-07 65.4 11.5 119 183-328 699-821 (963)
22 PF01532 Glyco_hydro_47: Glyco 96.3 0.025 5.3E-07 63.1 10.7 189 251-445 82-307 (452)
23 cd04434 LanC_like LanC-like pr 96.2 0.3 6.5E-06 51.0 18.2 230 188-451 10-253 (343)
24 COG4225 Predicted unsaturated 95.8 0.72 1.6E-05 49.0 18.3 234 182-455 38-305 (357)
25 PF06662 C5-epim_C: D-glucuron 95.8 0.041 8.9E-07 54.1 8.7 132 306-444 36-186 (189)
26 cd04794 euk_LANCL eukaryotic L 95.8 0.25 5.3E-06 52.8 15.4 192 184-385 105-305 (343)
27 PF07470 Glyco_hydro_88: Glyco 95.8 0.048 1E-06 58.1 9.7 132 305-456 30-163 (336)
28 COG2942 N-acyl-D-glucosamine 2 95.7 0.21 4.5E-06 54.0 14.2 192 176-384 114-337 (388)
29 COG4225 Predicted unsaturated 95.5 0.047 1E-06 57.6 8.3 188 251-455 41-246 (357)
30 PF01532 Glyco_hydro_47: Glyco 95.3 0.15 3.2E-06 56.9 11.8 262 181-452 78-389 (452)
31 COG2942 N-acyl-D-glucosamine 2 95.0 0.2 4.4E-06 54.1 11.2 142 181-329 175-332 (388)
32 PTZ00470 glycoside hydrolase f 95.0 1.2 2.6E-05 50.6 17.8 261 181-453 156-456 (522)
33 cd04794 euk_LANCL eukaryotic L 94.4 0.5 1.1E-05 50.4 12.6 125 189-330 174-300 (343)
34 PF00759 Glyco_hydro_9: Glycos 93.9 2.4 5.1E-05 46.9 17.1 129 198-330 93-245 (444)
35 KOG2429 Glycosyl hydrolase, fa 93.8 0.25 5.3E-06 55.2 8.8 44 183-228 199-242 (622)
36 PF06917 Pectate_lyase_2: Peri 93.8 1.4 3.1E-05 48.9 14.4 255 183-453 72-473 (557)
37 cd04793 LanC LanC is the cycla 93.3 2.5 5.4E-05 45.8 15.8 198 183-384 104-327 (382)
38 KOG2787 Lanthionine synthetase 91.0 1.1 2.3E-05 47.3 8.8 129 184-330 222-356 (403)
39 KOG2244 Highly conserved prote 91.0 1.5 3.3E-05 49.1 10.2 146 182-328 507-671 (786)
40 PLN02266 endoglucanase 90.5 5.1 0.00011 45.4 14.3 124 198-328 129-280 (510)
41 KOG2244 Highly conserved prote 89.6 18 0.00039 40.9 17.0 46 182-227 338-383 (786)
42 cd04793 LanC LanC is the cycla 88.0 6.8 0.00015 42.4 12.8 143 180-330 172-323 (382)
43 KOG2787 Lanthionine synthetase 87.1 8.2 0.00018 40.9 11.9 108 265-384 241-360 (403)
44 PLN02340 endoglucanase 86.5 12 0.00027 43.3 14.2 170 153-328 57-264 (614)
45 PF05147 LANC_like: Lanthionin 86.1 2.4 5.3E-05 44.6 7.9 134 182-330 165-304 (355)
46 PLN02175 endoglucanase 85.9 7.6 0.00016 43.8 11.8 117 251-384 174-309 (484)
47 PLN02171 endoglucanase 85.4 14 0.00029 43.2 13.8 169 153-328 57-265 (629)
48 PLN02909 Endoglucanase 85.2 17 0.00037 41.1 14.1 120 198-327 119-264 (486)
49 PLN02345 endoglucanase 84.8 10 0.00022 42.6 12.2 123 198-326 81-228 (469)
50 COG4403 LcnDR2 Lantibiotic mod 83.5 16 0.00034 43.6 13.2 222 190-442 657-907 (963)
51 PLN02420 endoglucanase 82.5 22 0.00048 40.5 13.7 169 154-329 69-277 (525)
52 PF05147 LANC_like: Lanthionin 82.2 2.8 6E-05 44.2 6.2 180 192-384 118-308 (355)
53 PLN03009 cellulase 79.4 35 0.00076 38.7 13.9 125 197-327 111-264 (495)
54 PF13243 Prenyltrans_1: Prenyl 79.3 2 4.4E-05 37.4 3.4 79 184-281 27-105 (109)
55 PLN02613 endoglucanase 79.2 29 0.00064 39.3 13.2 122 197-328 110-257 (498)
56 KOG2430 Glycosyl hydrolase, fa 78.9 13 0.00028 39.6 9.4 143 166-330 235-389 (587)
57 PLN00119 endoglucanase 78.6 35 0.00076 38.6 13.5 125 198-328 116-265 (489)
58 PLN02308 endoglucanase 77.3 23 0.0005 40.1 11.7 124 199-328 112-262 (492)
59 KOG2431 1, 2-alpha-mannosidase 76.8 2.7 5.8E-05 45.8 3.9 79 250-329 179-270 (546)
60 PF06917 Pectate_lyase_2: Peri 72.7 14 0.00031 41.3 8.3 87 182-281 386-472 (557)
61 PF09492 Pec_lyase: Pectic aci 65.6 14 0.0003 38.9 6.1 106 359-471 48-167 (289)
62 TIGR02474 pec_lyase pectate ly 62.8 63 0.0014 34.1 10.4 91 182-281 46-149 (290)
63 KOG2430 Glycosyl hydrolase, fa 61.7 65 0.0014 34.5 10.1 94 183-283 188-285 (587)
64 TIGR02474 pec_lyase pectate ly 61.4 35 0.00076 35.9 8.2 105 359-471 53-172 (290)
65 PF09492 Pec_lyase: Pectic aci 59.4 50 0.0011 34.8 8.9 91 182-281 41-144 (289)
66 PHA02811 putative host range p 59.1 14 0.0003 36.2 4.3 48 551-600 32-83 (197)
67 PF05592 Bac_rhamnosid: Bacter 54.3 78 0.0017 35.6 10.2 130 194-336 163-321 (509)
68 KOG2204 Mannosyl-oligosacchari 54.2 84 0.0018 35.9 9.9 195 190-395 340-571 (625)
69 PLN03012 Camelliol C synthase 52.6 1.1E+02 0.0023 36.8 11.0 165 90-281 459-651 (759)
70 PF03287 Pox_C7_F8A: Poxvirus 49.7 27 0.00058 33.1 4.5 40 551-592 32-74 (149)
71 KOG2431 1, 2-alpha-mannosidase 47.5 32 0.00068 37.9 5.2 115 351-468 176-292 (546)
72 TIGR01507 hopene_cyclase squal 45.3 88 0.0019 36.7 8.9 92 182-281 383-483 (635)
73 cd02889 SQCY Squalene cyclase 44.7 1.5E+02 0.0031 31.3 9.9 45 182-228 94-140 (348)
74 KOG2429 Glycosyl hydrolase, fa 42.4 3E+02 0.0065 31.7 11.9 73 251-325 203-283 (622)
75 PF12273 RCR: Chitin synthesis 41.9 19 0.00041 33.1 2.3 24 3-26 1-24 (130)
76 PF02011 Glyco_hydro_48: Glyco 38.2 65 0.0014 36.8 6.0 94 186-282 413-524 (619)
77 TIGR03463 osq_cycl 2,3-oxidosq 36.7 4.4E+02 0.0095 31.0 12.9 108 166-281 357-489 (634)
78 PF13249 Prenyltrans_2: Prenyl 34.8 1.2E+02 0.0025 26.1 6.2 60 205-280 42-103 (113)
79 PHA02919 host-range protein; P 33.1 66 0.0014 30.3 4.3 47 551-599 31-81 (150)
80 KOG0602 Neutral trehalase [Car 31.5 1E+02 0.0022 35.7 6.3 106 168-283 407-517 (600)
81 COG1554 ATH1 Trehalose and mal 30.8 2E+02 0.0044 34.4 8.7 109 164-283 345-476 (772)
82 PF13243 Prenyltrans_1: Prenyl 29.7 19 0.00041 31.2 0.2 59 205-282 1-59 (109)
83 PF06881 Elongin_A: RNA polyme 28.9 56 0.0012 29.0 3.1 63 38-101 9-74 (109)
84 PHA02854 putative host range p 26.2 1E+02 0.0022 30.0 4.4 48 551-600 32-83 (178)
85 TIGR01787 squalene_cyclas squa 25.2 3.9E+02 0.0085 31.3 9.9 80 197-281 382-472 (621)
86 PF05426 Alginate_lyase: Algin 24.9 1.3E+02 0.0028 30.6 5.4 25 307-331 63-87 (272)
87 TIGR03515 GldC gliding motilit 24.7 1.6E+02 0.0035 26.3 5.0 36 248-283 69-105 (108)
88 TIGR01535 glucan_glucosid gluc 24.5 3.3E+02 0.0072 32.1 9.1 126 185-328 296-438 (648)
89 PRK13807 maltose phosphorylase 24.4 7.3E+02 0.016 29.9 12.1 145 122-282 307-466 (756)
90 cd06465 p23_hB-ind1_like p23_l 24.3 4.6E+02 0.01 22.8 8.1 20 504-526 2-21 (108)
91 cd02892 SQCY_1 Squalene cyclas 22.4 2.4E+02 0.0052 33.0 7.5 56 167-228 359-423 (634)
92 PF12060 DUF3541: Domain of un 20.8 90 0.002 31.4 3.0 28 356-383 28-57 (227)
93 cd06463 p23_like Proteins cont 20.4 4.2E+02 0.009 20.9 6.7 61 516-589 7-67 (84)
No 1
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=100.00 E-value=3.2e-100 Score=850.34 Aligned_cols=456 Identities=38% Similarity=0.629 Sum_probs=415.0
Q ss_pred CeEecCCCchHHHHHHHHhhhhccCCcchhhhhHHhcCCCCCCCCCCCCC--CCCcCccccchhhHHHHHHHHHHhcCCh
Q 007471 122 DVRLGSDSMHWRAQQTNLEYLLMLDVDKLVWNFRKTARLPAPGEPYGGWE--EPSCELRGHFVGHYLSASALMWASTHNE 199 (602)
Q Consensus 122 ~V~l~~~~~~~~~~~~~~~~ll~ld~drll~nFr~~AGl~~~g~~~ggWe--~~d~~lrGh~~g~wLsa~a~~~a~t~D~ 199 (602)
+|+|+| |||+++|++++++++++++|+|+++||..|||+.++.++|||| ++++.++||++||||||+|++|+.++|+
T Consensus 1 ~V~l~~-~~~~~~~~~~~~~~l~~~~d~ll~~~r~~agl~~~~~~~g~we~~~~~~~~~~~~~g~wl~a~a~~~~~~~D~ 79 (520)
T PF07944_consen 1 DVRLTD-GFWKRRQELNRAYLLPLDPDRLLYNFRSHAGLPNFAIAYGGWEGEFPGWWFRGHDVGKWLEAAAYAYAYTGDP 79 (520)
T ss_pred CeEECc-HHHHHHHHHHHHHHHHhHHHHHhhhcCcccCCCCccccCCCCccCCCCCccCCCcHHHHHHHHHHHHHHCCCH
Confidence 699996 8999999999999999999999999999999999888999999 8899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCcceecCCCchhhhhhccCCcccc----cchHHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 007471 200 SLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAP----YYTIHKILAGLLDQYTYADNAEALRMTTWMV 275 (602)
Q Consensus 200 ~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~~~~~~~~~~~~~~W~p----yy~~Hki~aGLl~~y~~tG~~~aL~ia~r~a 275 (602)
+|+++++++|+.|.+||+ +||||+++++.. .......|+| +|+.|||+.||+++|++|||+++|++++|+|
T Consensus 80 ~l~~~~d~~V~~l~~~Q~--~dGYl~~~~~~~---~~~~~~~w~~~~he~Y~~~~ll~gl~~~y~~tG~~~~L~v~~k~a 154 (520)
T PF07944_consen 80 ELKAKADEIVDELAAAQQ--PDGYLGTYPEER---NFNPDDRWAPDMHELYCLGKLLEGLIDYYEATGNERALDVATKLA 154 (520)
T ss_pred HHHHHHHHHHHHHHHhcc--CCceeccccccc---ccccccCCCCCccceehHhHHHHHHHHHHHHHCcHHHHHHHHHHH
Confidence 999999999999999999 999999998743 1234577888 9999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhcchhhhhhhcccccccchHHHHHHHHHHcCCHHHHHHHhhcccccccch--hhhcCCCCCCCCcCCCc
Q 007471 276 EYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGL--LALQADDISGFHSNTHI 353 (602)
Q Consensus 276 D~~~~~~~~~~~~~~~~~~~~~l~~E~GGm~~~L~~LY~~TGd~ryLdlA~~f~~~~~~~~--la~~~d~l~g~hant~i 353 (602)
||+.++.... ..+.....+.+++|||+++|++||++|||++||++|++|++..++++ +..+.|.+++.|+|+++
T Consensus 155 d~~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~~~~~~~~~~d~~~~~~a~~~~ 230 (520)
T PF07944_consen 155 DWVYRRLSRL----GPEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQRGFDPYDLAYGQDHLPGRHANTHI 230 (520)
T ss_pred HHHHHHhccC----CHHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCchhhcCccCCCcccccee
Confidence 9996554432 22233344567899999999999999999999999999999998888 78888999999999999
Q ss_pred chhH-------HHHHHHHHhCCchHHHHHHHHHHHhhccCeeeccCCCCC---CCCCCCCcccCCCCcccccccchhHHH
Q 007471 354 PIVI-------GSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVG---EFWSDPKRLASNLDSNTEESCTTYNML 423 (602)
Q Consensus 354 P~~~-------G~a~~Y~~TGD~~y~~aa~~~w~~v~~~~~y~TGG~g~~---E~f~~~~~L~~~l~~~~~ETCat~~~l 423 (602)
|.++ |.+++|++|||++|+++++++|++|+++|+|+|||+|++ |+|++++++|+ ...++|||++++||
T Consensus 231 ~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~~~~E~f~~~~~lp~--~~~~~EtCas~~~~ 308 (520)
T PF07944_consen 231 GHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSDHEGEHFGPPYDLPN--RLAYAETCASVNMM 308 (520)
T ss_pred eEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCCCCCccCCCCCCCCc--CCCCccccHHHHHH
Confidence 9998 999999999999999999999999999999999999999 99999999998 55679999999999
Q ss_pred HHHHHHHccCCcchhHHHHHHHHhhhhcccCCCCCCCeeEEecCCCCCCCCccCCCCCCCCCCCccCCCCCccchhhhcc
Q 007471 424 KVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCCYGTGIESFSKLG 503 (602)
Q Consensus 424 ~l~~~L~~~tgd~~YaD~~Er~lyN~ila~~~~~d~g~~~Y~~pl~~g~~k~~~~~~~~~~~~~f~CC~gt~~~~~~kl~ 503 (602)
+|+++||++|||++|+|++||++||++||+++| |+++|+|+|||+++..+... ..+.++...||||+||++|+++||+
T Consensus 309 ~~~~~L~~~tgd~~yaD~~Er~lyN~~la~~~~-d~~~~~Y~~pl~~~~~~~~~-~~~~~~~~~~~CC~~n~~r~~~~~~ 386 (520)
T PF07944_consen 309 KLARRLFRLTGDARYADYYERALYNALLAGQSP-DGGSFFYFNPLNSGPYKHRW-KNYRTPWFSFWCCPGNGARGWAKLP 386 (520)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHhcccccccCC-CCCeeEEecCCccCcCcccc-ccccCCCCCCCCCcchHHHHHHHHh
Confidence 999999999999999999999999999999997 99999999999987654211 2456677889999999999999999
Q ss_pred cceeeeecCCCCcEEEEEecCcEEEeeecc--eEEEEEeCCCCCCCCCeEEEEEEEeCCCCeeeEEEEeccCCCCCCCcE
Q 007471 504 DSIYFEEEGKYPGVYIIQYISSRLDWKSGQ--IVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAK 581 (602)
Q Consensus 504 ~~iY~~~~~~~~~L~VnLY~pS~~~~~~~g--v~i~q~T~yP~~~~g~~~V~l~V~~~~~~~~f~L~lRIP~Wa~~~~~~ 581 (602)
++||+++++ +||||||+||+++|+.++ |+|+|+|+||++ + +|+|+|++. ++.+|+|+||||+||+ +++
T Consensus 387 ~~iy~~~~~---~l~v~ly~~s~~~~~~~~~~v~i~q~T~yP~~--~--~v~i~v~~~-~~~~f~l~lRIP~Wa~--~~~ 456 (520)
T PF07944_consen 387 DYIYFRDDD---GLYVNLYIPSELTWPVGGGTVTITQETDYPFE--G--TVRITVSPD-KPVPFTLRLRIPSWAK--GAT 456 (520)
T ss_pred hhheEecCC---EEEEEEEcceEEEEEECCcEEEEEEecCCCCC--C--CEEEEEEcC-CCccEEEEEEccCCCC--CcE
Confidence 999999975 999999999999999877 999999998865 4 899999875 7899999999999998 799
Q ss_pred EEECCee-ccCCCCCceEEec
Q 007471 582 ATLNGQD-LPLPSPGQNTIII 601 (602)
Q Consensus 582 i~VNG~~-~~~~~pG~y~~i~ 601 (602)
|+|||++ .....||+|++|-
T Consensus 457 i~vNG~~~~~~~~~~gy~~i~ 477 (520)
T PF07944_consen 457 IRVNGEPVVDTAVPGGYLTIE 477 (520)
T ss_pred EEECCEeCCCCcCCCCeEEEE
Confidence 9999999 5555699999983
No 2
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=1.2e-97 Score=782.73 Aligned_cols=449 Identities=26% Similarity=0.410 Sum_probs=404.8
Q ss_pred ccccCCCCeEecCCCchHHHHHHHHhhhhccCCcchhhhhHHhcCCCCCCCCCCCCCCCCcCccccchhhHHHHHHHHHH
Q 007471 115 LKEVSLHDVRLGSDSMHWRAQQTNLEYLLMLDVDKLVWNFRKTARLPAPGEPYGGWEEPSCELRGHFVGHYLSASALMWA 194 (602)
Q Consensus 115 l~~~~l~~V~l~~~~~~~~~~~~~~~~ll~ld~drll~nFr~~AGl~~~g~~~ggWe~~d~~lrGh~~g~wLsa~a~~~a 194 (602)
++|+++++|.+ ++| |..+.+++++++.|+|++++-.+++|+.+...++||+.+. +.||.+||||||+|++++
T Consensus 9 ~r~v~v~~~~~--~~~----qg~~~d~v~~~~~d~Lldr~~ea~~l~~~d~~r~g~~~q~--f~dsdlgkwlea~A~~l~ 80 (589)
T COG3533 9 LRPVTVKDVIF--GQF----QGKNRDVVVSLQADRLLDRCHEAAMLPAKDPFRGGWETQM--FWDSDLGKWLEAAAYSLA 80 (589)
T ss_pred cccCCcCchhc--ccc----ccccceeEEecCHHHHHhHhhhccCCCccCcccccceeee--eccccHHHHHHHHHHHHh
Confidence 77888887777 344 5777899999999999999999999998888889998543 667779999999999999
Q ss_pred hcCChHHHHHHHHHHHHHHHhhhhcCCcceecCCCc--hhhhhhccCCcccccchHHHHHHHHHHHHHHcCCHhHHHHHH
Q 007471 195 STHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTE--QFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTT 272 (602)
Q Consensus 195 ~t~D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~~~--~~~~~~~~~~~W~pyy~~Hki~aGLl~~y~~tG~~~aL~ia~ 272 (602)
.++|++|.+++|++|+.+++.|+ +|||||++.+. ...||.++++.|+.||.+|+|++++ ++|++||+.++|++++
T Consensus 81 ~~~dp~Lekr~D~vi~~~a~~Qd--edGYl~~~~q~~~pe~Rw~nlr~~HelY~aghLieg~v-a~~qaTGkr~lldV~~ 157 (589)
T COG3533 81 NKGDPELEKRIDEVVEELARAQD--EDGYLGGWFQADFPEERWGNLRPNHELYCAGHLIEGGV-AAHQATGKRRLLDVVC 157 (589)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhc--cCCcccceeeccCchhhhhccccchHHHHhHHHHhhhh-HHHHhhCcchHHHHHH
Confidence 99999999999999999999999 99999999874 3568999999999999999887776 9999999999999999
Q ss_pred HHHHHHHHHhhhhhhcchhhhhhhcccccccchHHHHHHHHHHcCCHHHHHHHhhcccccccchhhhcCCCCCCCCcCCC
Q 007471 273 WMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTH 352 (602)
Q Consensus 273 r~aD~~~~~~~~~~~~~~~~~~~~~l~~E~GGm~~~L~~LY~~TGd~ryLdlA~~f~~~~~~~~la~~~d~l~g~hant~ 352 (602)
|+|||+.+.|++... +.++-+++++|+++|++||+.|||+|||+||++|++++..+|++++.+.+.+.||+++
T Consensus 158 rlADhi~tvfgp~~~-------q~~g~~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~~rg~~P~~~rg~e~~~gHAvr~ 230 (589)
T COG3533 158 RLADHIATVFGPEED-------QVPGYCGHPEIELALAELYRLTGDQRYLDLARRFIHQRGVEPLAQRGDELEGGHAVRQ 230 (589)
T ss_pred HHHHhhhhhcCcccc-------ccccccCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccChhhcCchhhhhhhHHHH
Confidence 999999999987421 3445677788999999999999999999999999999998998888888889999999
Q ss_pred cchhHHHHHHHHHhCCchHHHHHHHHHHHhhccCeeeccCCCC-CCCCCCCCcccCCCCcccccccchhHHHHHHHHHHc
Q 007471 353 IPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSV-GEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFR 431 (602)
Q Consensus 353 iP~~~G~a~~Y~~TGD~~y~~aa~~~w~~v~~~~~y~TGG~g~-~E~f~~~~~L~~~l~~~~~ETCat~~~l~l~~~L~~ 431 (602)
||+.+|+|++|+++||+.+++++++||++|+++++|+|||+|+ +|+|+++|+||| .+.|+|||+|||||||++||+.
T Consensus 231 iyl~~G~A~l~~~~gDds~r~~~~~lW~~~t~k~~YitGG~g~~~E~F~~~ydlpn--~~~yAEtCas~~l~~~a~Rml~ 308 (589)
T COG3533 231 IYLYIGAADLAEETGDDSLRQAAEFLWQNVTTRQSYITGGNGSSNEHFGPDYDLPN--RTAYAETCASYNLLKLARRMLG 308 (589)
T ss_pred HHHhhhHHHHHHHhCCHHHHHHHHHHHHHhhhhheEEecccCCccccCCccccCcc--cchHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999964 599999999999 6899999999999999999999
Q ss_pred cCCcchhHHHHHHHHhhhhcccCCCCCCCeeEEecCCCCCCCCccCCCCCCCCCCCccCCCCCccchhhhcccceeeeec
Q 007471 432 WTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCCYGTGIESFSKLGDSIYFEEE 511 (602)
Q Consensus 432 ~tgd~~YaD~~Er~lyN~ila~~~~~d~g~~~Y~~pl~~g~~k~~~~~~~~~~~~~f~CC~gt~~~~~~kl~~~iY~~~~ 511 (602)
+.+|++|||+|||+|||++|++|++ |+++|||+|||+....+ .+.+..+||||.||+.|.++|+++|||...+
T Consensus 309 ~~~d~~yaDvmErALYN~iL~g~sl-Dg~~ffY~nPle~~grh------~r~~w~~c~CCppn~ar~~as~g~yiY~~~~ 381 (589)
T COG3533 309 WGPDSQYADVMERALYNHILAGQSL-DGGMFFYFNPLESGGRH------SRQKWFSCWCCPPNGARSVASIGDYIYTRAD 381 (589)
T ss_pred cCCCchHHHHHHHHHHhccccccCC-CCCeeEEecchhhCCCc------cccccccCCCCCCcHhhhhhhccceEEccCC
Confidence 9999999999999999999999995 99999999999865421 2345666777878888999999999999988
Q ss_pred CCCCcEEEEEecCcEEEeeecceEEEEEeCCCCCCCCCeEEEEEEEeCCCCeeeEEEEeccCCCCCCCcEEEECCeeccC
Q 007471 512 GKYPGVYIIQYISSRLDWKSGQIVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQDLPL 591 (602)
Q Consensus 512 ~~~~~L~VnLY~pS~~~~~~~gv~i~q~T~yP~~~~g~~~V~l~V~~~~~~~~f~L~lRIP~Wa~~~~~~i~VNG~~~~~ 591 (602)
| +||||||+.|+++.+..+|+|+|+|+|| |+| .|+|||... .+.+|+|+||||+||. .++++|||+.+..
T Consensus 382 d---~lyvnLy~~S~~~l~~~~v~irqet~yP--w~g--~v~ltv~~~-~p~~~tlaLRlP~W~a--~~tl~vNG~~~~~ 451 (589)
T COG3533 382 D---ALYVNLYIASTADLPGDDVQIRQETNYP--WSG--QVKLTVERA-QPVLFTLALRLPAWCA--APTLRVNGKEVIQ 451 (589)
T ss_pred C---EEEEEEeecccccccccceEEEeccCCC--CcC--eeEEEEecC-CCceEEEEEecccccC--CcEEEEcCcchhh
Confidence 6 8999999999999998889999999966 667 999999986 7899999999999998 8999999977766
Q ss_pred CCCCceEEe
Q 007471 592 PSPGQNTII 600 (602)
Q Consensus 592 ~~pG~y~~i 600 (602)
...+.|+.|
T Consensus 452 ~~~~GYa~i 460 (589)
T COG3533 452 TRGKGYARI 460 (589)
T ss_pred ccCCCeeee
Confidence 555569987
No 3
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=98.98 E-value=1.3e-07 Score=101.83 Aligned_cols=274 Identities=13% Similarity=0.065 Sum_probs=162.7
Q ss_pred hhhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhhcC-CcceecCCCchhhhhhccCCcccccchHHHHHHHHHHHHH
Q 007471 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIG-SGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYT 260 (602)
Q Consensus 182 ~g~wLsa~a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~-dGYL~~~~~~~~~~~~~~~~~W~pyy~~Hki~aGLl~~y~ 260 (602)
.+..|-++|..+..++|++.++.++..++.|.+.-.... .||+..+... ......... .|..=.++.|+..+|+
T Consensus 55 ~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~-g~~~~~~~~----l~~~a~~l~ala~~~~ 129 (384)
T cd00249 55 QARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQD-GRPVDATKD----LYSHAFALLAAAQAAK 129 (384)
T ss_pred ecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCC-CCCcccccc----hHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999998654223 4677665421 000000111 2222234567779999
Q ss_pred HcCCHhHHHHHHHHHHHHHHHhhhhhhcch--hhhhhhcccccccch--HHHHHHHHHHcCCHHHHHHHhhccc---ccc
Q 007471 261 YADNAEALRMTTWMVEYFYNRVQNVIKKYS--IERHWQTLNEEAGGM--NDVLYKLFCITQDPKHLMLAHLFDK---PCF 333 (602)
Q Consensus 261 ~tG~~~aL~ia~r~aD~~~~~~~~~~~~~~--~~~~~~~l~~E~GGm--~~~L~~LY~~TGd~ryLdlA~~f~~---~~~ 333 (602)
++|++++++.|.+.++++.+++-+..+++- ....+.......+-| .++|..|+++|||++|++.|+...+ +.+
T Consensus 130 at~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~~~ 209 (384)
T cd00249 130 VGGDPEARALAEETIDLLERRFWEDHPGAFDEADPGTPPYRGSNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILDRF 209 (384)
T ss_pred hcCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988731001110 000011111111112 4689999999999999999976432 112
Q ss_pred cchhh----hc-CCCCCCCC--cCCCc-c-----hhHHHHHHHHHhCCchHHHHHHHHHHHhhccCeee-ccCCCCCCCC
Q 007471 334 LGLLA----LQ-ADDISGFH--SNTHI-P-----IVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYA-TGGTSVGEFW 399 (602)
Q Consensus 334 ~~~la----~~-~d~l~g~h--ant~i-P-----~~~G~a~~Y~~TGD~~y~~aa~~~w~~v~~~~~y~-TGG~g~~E~f 399 (602)
.++.. .. .+...-.. ....+ | .+......|+++||+.|++.++..++.+.++..=. +||+-. .+
T Consensus 210 ~~~~~G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~d~~~G~~~~--~~ 287 (384)
T cd00249 210 IDAESGVVREHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRLFDLALALGWDPERGGLYY--SF 287 (384)
T ss_pred cCcccCeEEEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCcCccCCCEEE--ee
Confidence 21110 00 01000000 00111 2 12344677899999999999999999887533111 233211 11
Q ss_pred CCCCcccCCCCcccccccchhHHHHHHHHHHccCCcchhHHHHHHH---HhhhhcccCCCCCCCeeEEecCC
Q 007471 400 SDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERS---LTNGVLGIQRGTEPGVMIYLLPL 468 (602)
Q Consensus 400 ~~~~~L~~~l~~~~~ETCat~~~l~l~~~L~~~tgd~~YaD~~Er~---lyN~ila~~~~~d~g~~~Y~~pl 468 (602)
..+...+ ...+.-.....++++....|+++|||.+|.+.++++ +++..+ ++..|+-+.+..+-
T Consensus 288 ~~~~~~~---~~~~~~~w~~~E~~~a~~~l~~~tgd~~~~~~~~~~~~~~~~~~~---d~~~G~w~~~~~~~ 353 (384)
T cd00249 288 LDDGGLL---EDDDKRWWPQTEALKAALALAGITGDERYWQWYQRAWAYLWRHFI---DPEYGLWFGYLDAD 353 (384)
T ss_pred ECCCCCc---ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC---CCCCCcceeeECCC
Confidence 1111111 123445556778888888999999999999999887 444444 33234445555543
No 4
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=98.34 E-value=3.1e-05 Score=83.35 Aligned_cols=251 Identities=12% Similarity=0.094 Sum_probs=141.5
Q ss_pred HHHHHHHHHHhhh-hcCCcceecCCCchhhhhhccCCcccccchHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhh
Q 007471 205 MSAVVSALSACQK-EIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQ 283 (602)
Q Consensus 205 ~~~~Vd~l~~~Q~-~~~dGYL~~~~~~~~~~~~~~~~~W~pyy~~Hki~aGLl~~y~~tG~~~aL~ia~r~aD~~~~~~~ 283 (602)
++.+++.+....- ....||....... ..-....+.+|. .=.++-++..+|+++|++++++.|.+.++++.+.+.
T Consensus 16 ~~~~~~fw~~~~~d~~~gg~~~~l~~~-g~~~~~~k~~~~----~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~ 90 (384)
T cd00249 16 LEDLLPFWLEAGLDREAGGFFECLDRD-GQPFDTDRRLWL----QARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGR 90 (384)
T ss_pred HHHHHHHHHhcCCCCCCCCeEEEECCC-CCCCCCCCeEEE----ecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCc
Confidence 4566666655322 1134666544221 011111223332 223456676789999999999999999999998765
Q ss_pred hhh-hcch--hhhhhhccccc-----ccchHHHHHHHHHHcCCHHHHHHHhhcc---cccccc-------hhhhcCCCCC
Q 007471 284 NVI-KKYS--IERHWQTLNEE-----AGGMNDVLYKLFCITQDPKHLMLAHLFD---KPCFLG-------LLALQADDIS 345 (602)
Q Consensus 284 ~~~-~~~~--~~~~~~~l~~E-----~GGm~~~L~~LY~~TGd~ryLdlA~~f~---~~~~~~-------~la~~~d~l~ 345 (602)
... +++- ..+-+.+.... ..=+..+|..+|++|||++||+.|+... ...+++ .........+
T Consensus 91 d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~ 170 (384)
T cd00249 91 DPDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEARALAEETIDLLERRFWEDHPGAFDEADPGTPPYR 170 (384)
T ss_pred CCCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCC
Confidence 321 1110 00011111110 1113368889999999999999997542 222221 1000001112
Q ss_pred CCCcCCCcchhHHHHHHHHHhCCchHHHHHHHHHHHhhccCeee--ccCCCCCCCCCCCCcccCCCCcccccccchhHHH
Q 007471 346 GFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYA--TGGTSVGEFWSDPKRLASNLDSNTEESCTTYNML 423 (602)
Q Consensus 346 g~hant~iP~~~G~a~~Y~~TGD~~y~~aa~~~w~~v~~~~~y~--TGG~g~~E~f~~~~~L~~~l~~~~~ETCat~~~l 423 (602)
+ .|.+.-.+.+....|++|||+.|++.++..++.+.+ +.+. .|++- |.+..+..+.+.-.....+.-...+++
T Consensus 171 ~--~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~-~~~~~~~G~~~--e~~~~~~~~~~~~~~~~~~Pgh~~e~a 245 (384)
T cd00249 171 G--SNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILD-RFIDAESGVVR--EHFDEDWNPYNGDKGRHQEPGHQFEWA 245 (384)
T ss_pred C--CChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HhcCcccCeEE--EEECCCCCCCcCcCCCcCCCchHHHHH
Confidence 2 244443456778889999999999999999988875 3432 45442 544332211110011112222344566
Q ss_pred HHHHHHHccCCcchhHHHHHHHHhhhhcc-cCCCCCCCeeEE-ecC
Q 007471 424 KVSRHLFRWTKEIAYADYYERSLTNGVLG-IQRGTEPGVMIY-LLP 467 (602)
Q Consensus 424 ~l~~~L~~~tgd~~YaD~~Er~lyN~ila-~~~~~d~g~~~Y-~~p 467 (602)
.+.-+|.+++||.+|.+.++++ ++.+.. +.++ +.|.++| ..+
T Consensus 246 ~~ll~l~~~~~~~~~~~~a~~~-~~~~~~~~~d~-~~G~~~~~~~~ 289 (384)
T cd00249 246 WLLLRIASRSGQAWLIEKARRL-FDLALALGWDP-ERGGLYYSFLD 289 (384)
T ss_pred HHHHHHHhhcCCHHHHHHHHHH-HHHHHHhCcCc-cCCCEEEeeEC
Confidence 7777888899999999999875 666665 4565 6566666 544
No 5
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=98.05 E-value=0.00013 Score=82.54 Aligned_cols=189 Identities=17% Similarity=0.151 Sum_probs=112.3
Q ss_pred chHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhh--hhhcc------hhhhhhhc-cccc--ccchHHHHHHHHH
Q 007471 246 YTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQN--VIKKY------SIERHWQT-LNEE--AGGMNDVLYKLFC 314 (602)
Q Consensus 246 y~~Hki~aGLl~~y~~tG~~~aL~ia~r~aD~~~~~~~~--~~~~~------~~~~~~~~-l~~E--~GGm~~~L~~LY~ 314 (602)
..+|.|.+.. -.|..++|+++++.+.+++|.+.+.=.+ .+..+ .....|.+ .|+- .|-|-.+|+..|+
T Consensus 61 ~~g~wl~a~a-~~~~~~~D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~ll~gl~~~y~ 139 (520)
T PF07944_consen 61 DVGKWLEAAA-YAYAYTGDPELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLGKLLEGLIDYYE 139 (520)
T ss_pred cHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHhHHHHHHHHHHH
Confidence 3567676554 6788999999999999999998865221 00001 11123443 1111 1235689999999
Q ss_pred HcCCHHHHHHHhhccccc--ccchhhhc--CCCCCCCCcCCCcchhHHHHHHHHHhCCchHHHHHHHHHHHhhccCeeec
Q 007471 315 ITQDPKHLMLAHLFDKPC--FLGLLALQ--ADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYAT 390 (602)
Q Consensus 315 ~TGd~ryLdlA~~f~~~~--~~~~la~~--~d~l~g~hant~iP~~~G~a~~Y~~TGD~~y~~aa~~~w~~v~~~~~y~T 390 (602)
.||+++.|+.|.++.+-. ....+... ...+... |-=+.++.+.+|++|||++|++.|+.|.+.-...-
T Consensus 140 ~tG~~~~L~v~~k~ad~~~~~~~~~~~~~~~~~~~~~----~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~~~---- 211 (520)
T PF07944_consen 140 ATGNERALDVATKLADWVYRRLSRLGPEPGQKMGYPE----HGGINEALVRLYEITGDERYLDLAEYFVDQRGFDP---- 211 (520)
T ss_pred HHCcHHHHHHHHHHHHHHHHHhccCCHHHhhcccccc----cchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC----
Confidence 999999999999874311 01111100 1111111 22223778999999999999999999988532111
Q ss_pred cCCCCCCCCCCCCcccCCCCcccccccchh---HHHHHHHHHHccCCcchhHHHHHHHHhhhh
Q 007471 391 GGTSVGEFWSDPKRLASNLDSNTEESCTTY---NMLKVSRHLFRWTKEIAYADYYERSLTNGV 450 (602)
Q Consensus 391 GG~g~~E~f~~~~~L~~~l~~~~~ETCat~---~~l~l~~~L~~~tgd~~YaD~~Er~lyN~i 450 (602)
.+ ... ..+.++. ..++.-..-++ .+..-.-.+++.|||.+|.+..|+..-|-+
T Consensus 212 --~~-~~~--~~d~~~~--~~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~ 267 (520)
T PF07944_consen 212 --YD-LAY--GQDHLPG--RHANTHIGHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVV 267 (520)
T ss_pred --Cc-hhh--cCccCCC--ccccceeeEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 00 011 1112232 12222222223 344456688999999999999999876644
No 6
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.00052 Score=77.95 Aligned_cols=249 Identities=17% Similarity=0.101 Sum_probs=131.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhhcCCcceecCCCchhhhhhccCCcccccchHHH--HHHHH------
Q 007471 184 HYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHK--ILAGL------ 255 (602)
Q Consensus 184 ~wLsa~a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~~~~~~~~~~~~~~W~pyy~~Hk--i~aGL------ 255 (602)
.-+.+++.+|+.++|+.++..++.+++.|.+--..++.||-++.....+. -+. -||+.-. |...|
T Consensus 277 ~l~~~y~~ay~~tgd~~y~~~a~~i~~~l~rel~sp~ggFyss~DAD~~g-~EG------~~Y~Ws~eEi~~~Lg~d~~~ 349 (667)
T COG1331 277 LLLRAYAEAYRATGDDLYRRAAEGILDYLLRELYSPEGGFYSSLDADSDG-EEG------KYYTWSVEELKEVLGEDAEL 349 (667)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCceeecccccCcc-cCC------CeeecCHHHHHHHhcccHHH
Confidence 34778888999999999999999999999988776555655443211000 000 1221111 10000
Q ss_pred -HHHHHHc--CCH---hH----------HHHHHHHHHHHHHHhhhhhhcchhhhhh-----hcccccccchHHHHHHHHH
Q 007471 256 -LDQYTYA--DNA---EA----------LRMTTWMVEYFYNRVQNVIKKYSIERHW-----QTLNEEAGGMNDVLYKLFC 314 (602)
Q Consensus 256 -l~~y~~t--G~~---~a----------L~ia~r~aD~~~~~~~~~~~~~~~~~~~-----~~l~~E~GGm~~~L~~LY~ 314 (602)
..+|.++ ||= .+ .+-+.+.++-..+.+.. +..++.. .++..-.|=|..+|+++++
T Consensus 350 ~~~~f~vs~~GnfeGrnvL~~~~~~~~~~~~~~~~l~~~r~kL~~----~R~~R~~P~~Ddkvlt~wNglmi~aLa~a~~ 425 (667)
T COG1331 350 ACKYFDVSEEGNFEGRNVLHVPGPLEEAIEEAEEKLERAREKLLA----AREKRKQPSRDDKVLTDWNGLMIAALAEAGR 425 (667)
T ss_pred HHHHcccCCCCCcCCceeecccCchhhhhhhhHHHHHHHHHHHHH----HHHhCCCCCCCcceeeccHHHHHHHHHHHHH
Confidence 1233322 110 01 11111111111111110 0000000 0111112447789999999
Q ss_pred HcCCHHHHHHHhhc---ccccccchhhhcCCCCCCCC----------cCCCcchhHHHHHHHHHhCCchHHHHHHHHHHH
Q 007471 315 ITQDPKHLMLAHLF---DKPCFLGLLALQADDISGFH----------SNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDI 381 (602)
Q Consensus 315 ~TGd~ryLdlA~~f---~~~~~~~~la~~~d~l~g~h----------ant~iP~~~G~a~~Y~~TGD~~y~~aa~~~w~~ 381 (602)
++||++|+++|++- +...+++. .+...+ ..++.=.+.|....|++|+|.+|++.|+.+.+.
T Consensus 426 ~~~d~~~l~~A~~~~~fi~~~l~~~------rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~~A~~L~~~ 499 (667)
T COG1331 426 VLGDPEYLEAAERAADFILDNLYVD------RLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLEKAIELADE 499 (667)
T ss_pred HcCChHHHHHHHHHHHHHHHhhccc------chheeeecCcccccccchhHHHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 99999999999873 33222221 111111 122333457888899999999999999999999
Q ss_pred hhccCeeeccCC----CCCCCCC-CCCcccCCCCcccccccchhHHHHHHHHHHccCCcchhHHHHHHHH--hhhhcccC
Q 007471 382 VNSSHTYATGGT----SVGEFWS-DPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSL--TNGVLGIQ 454 (602)
Q Consensus 382 v~~~~~y~TGG~----g~~E~f~-~~~~L~~~l~~~~~ETCat~~~l~l~~~L~~~tgd~~YaD~~Er~l--yN~ila~~ 454 (602)
+...=-=.+||. +.+|... .+.... +.-.++=+++. +.-.-+|-++|||.+|.|..|++| +=+.++..
T Consensus 500 ~i~~f~d~~gGf~~t~~~~~~l~ir~~~~~----D~a~~S~na~~-~~~L~~Ls~ltg~~~y~e~A~~~L~a~~~~~~~~ 574 (667)
T COG1331 500 AIADFWDDEGGFYDTPSDSEDLLIRPKEPT----DGATPSGNAVA-AQALLRLSLLTGDARYLEAAEDILQAFAGLAERA 574 (667)
T ss_pred HHHHhcCCCCCcccCCCcccccccCCCCCC----CCCCCCHHHHH-HHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHhC
Confidence 874222233342 1222221 111111 11223333332 223345667999999999999999 76666654
No 7
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=97.90 E-value=7.4e-05 Score=80.87 Aligned_cols=182 Identities=18% Similarity=0.134 Sum_probs=99.5
Q ss_pred chHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhh-hhhc------chhhhhhhcccccccchHHHHHHHHHHcCC
Q 007471 246 YTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQN-VIKK------YSIERHWQTLNEEAGGMNDVLYKLFCITQD 318 (602)
Q Consensus 246 y~~Hki~aGLl~~y~~tG~~~aL~ia~r~aD~~~~~~~~-~~~~------~~~~~~~~~l~~E~GGm~~~L~~LY~~TGd 318 (602)
-.+|.+ .+++++++.+|+++..+++.+........... .... +-++..| +-+++.++|++||+
T Consensus 37 ~~a~~~-~~~~d~~~~t~d~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DD~aw---------~~la~l~aye~t~~ 106 (370)
T PF03663_consen 37 WQAVML-SALIDYYRRTGDPTYNDLIQNALLNQRGPNYDSYNPSNGSGDRYYDDNAW---------WALALLRAYELTGD 106 (370)
T ss_dssp HHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHTTSSS--S------BHHHHHH---------HHHHHHHHHHHH--
T ss_pred hHHHHH-HHHHHHHHHhCcchHHHHHHHHHHHHhcccccccccccccccCccChHHH---------HHHHHHHHHHhhCC
Confidence 356654 56779999999999999988887766544311 1000 1111111 23789999999999
Q ss_pred H-----HHHHHHhhcccc--cccchhhhcCCCCCCCCc--------------CCCcchhHHHHHHHHHhCCchHHHHHHH
Q 007471 319 P-----KHLMLAHLFDKP--CFLGLLALQADDISGFHS--------------NTHIPIVIGSQMRYEVTGDQLHKTISMF 377 (602)
Q Consensus 319 ~-----ryLdlA~~f~~~--~~~~~la~~~d~l~g~ha--------------nt~iP~~~G~a~~Y~~TGD~~y~~aa~~ 377 (602)
+ +||++|+...+. ..++...-+ .|... .+.-|.++..+++|++|||+.|++.|++
T Consensus 107 ~~~~~~~yL~~A~~i~~~~~~~wd~~~cg----GGi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~~A~~ 182 (370)
T PF03663_consen 107 QPSDNPKYLDLAKEIFDFLISGWDDTSCG----GGIWWSIDDTNSGYDYKNAISNGPAAQLAARLYRITGDQTYLDWAKK 182 (370)
T ss_dssp H-----HHHHHHHHHHHHHHHTB-SGG-G----S-BEEET----TEEEEEEHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHhcCCccCC----CCccccccccCCCCCcccccchHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 9 999999975321 112221100 11111 1123334667899999999999999999
Q ss_pred HHHHhhccCee-e-ccCCCCCCCCCCCCcccCCC-CcccccccchhH---HHHHHHHHHccCCcc-hhHHHHHHHHhhh
Q 007471 378 FMDIVNSSHTY-A-TGGTSVGEFWSDPKRLASNL-DSNTEESCTTYN---MLKVSRHLFRWTKEI-AYADYYERSLTNG 449 (602)
Q Consensus 378 ~w~~v~~~~~y-~-TGG~g~~E~f~~~~~L~~~l-~~~~~ETCat~~---~l~l~~~L~~~tgd~-~YaD~~Er~lyN~ 449 (602)
.|+.+.+.+++ . +|-+ .+. +...- -....++-=+|| +|.-+..|++.|++. .|.|..++++--.
T Consensus 183 ~~~W~~~~~L~d~~~g~v-------~Dg-~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~~la~~~ 253 (370)
T PF03663_consen 183 IYDWMRDSGLIDPSTGLV-------YDG-INIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAEKLADAA 253 (370)
T ss_dssp HHHHHHH-HHB--TTS-B---------E-E-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHH
T ss_pred HHHHhhcceeEECCCcEE-------EeC-CccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 99998864444 1 1211 100 00000 001122222333 466688899999776 9999999876444
No 8
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=97.88 E-value=0.00012 Score=79.17 Aligned_cols=185 Identities=13% Similarity=0.108 Sum_probs=103.2
Q ss_pred hhhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhhcCCcceecCCCc--hhhhhhccCCcccccchHHHHHHHHHHHH
Q 007471 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTE--QFDRLEALIPVWAPYYTIHKILAGLLDQY 259 (602)
Q Consensus 182 ~g~wLsa~a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~~~--~~~~~~~~~~~W~pyy~~Hki~aGLl~~y 259 (602)
.|+.++++...+..++|+++.+.+...+........ +-|....... ..+. ..| ..+ +++++|
T Consensus 38 ~a~~~~~~~d~~~~t~d~~y~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~DD-----~aw-------~~l-a~l~ay 101 (370)
T PF03663_consen 38 QAVMLSALIDYYRRTGDPTYNDLIQNALLNQRGPNY---DSYNPSNGSGDRYYDD-----NAW-------WAL-ALLRAY 101 (370)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT---SSS--S------BHHH-----HHH-------HHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhcccc---cccccccccccCccCh-----HHH-------HHH-HHHHHH
Confidence 578899999999999998888888877776653331 1133221110 1111 111 133 455999
Q ss_pred HHcCCH-----hHHHHHHHHHHHHHHHhhhhh-hcchhhhhhhc-----cc-----ccccchHHHHHHHHHHcCCHHHHH
Q 007471 260 TYADNA-----EALRMTTWMVEYFYNRVQNVI-KKYSIERHWQT-----LN-----EEAGGMNDVLYKLFCITQDPKHLM 323 (602)
Q Consensus 260 ~~tG~~-----~aL~ia~r~aD~~~~~~~~~~-~~~~~~~~~~~-----l~-----~E~GGm~~~L~~LY~~TGd~ryLd 323 (602)
++||++ +.|+.|.+..+++........ + +.-+|.. .. +..|..-...++||++|||++||+
T Consensus 102 e~t~~~~~~~~~yL~~A~~i~~~~~~~wd~~~cg---GGi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~ 178 (370)
T PF03663_consen 102 ELTGDQPSDNPKYLDLAKEIFDFLISGWDDTSCG---GGIWWSIDDTNSGYDYKNAISNGPAAQLAARLYRITGDQTYLD 178 (370)
T ss_dssp HHH--H-----HHHHHHHHHHHHHHHTB-SGG-G---S-BEEET----TEEEEEEHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred HhhCCCcchHHHHHHHHHHHHHHHHHhcCCccCC---CCccccccccCCCCCcccccchHHHHHHHHHHHHhcCChHHHH
Confidence 999999 999999999999987665431 1 1123431 11 111223366789999999999999
Q ss_pred HHhhccc---c-cccchhh----hcCCCCC-------CCCcCCCcchhHHHHHHHHHhCCc-hHHHHHHHHHHHhhcc
Q 007471 324 LAHLFDK---P-CFLGLLA----LQADDIS-------GFHSNTHIPIVIGSQMRYEVTGDQ-LHKTISMFFMDIVNSS 385 (602)
Q Consensus 324 lA~~f~~---~-~~~~~la----~~~d~l~-------g~hant~iP~~~G~a~~Y~~TGD~-~y~~aa~~~w~~v~~~ 385 (602)
.|++..+ . .++++.. .+.+.-. ..+.+.+--++.|++.+|+.|+|+ .|++.+++.-+.+.++
T Consensus 179 ~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~~la~~~~~~ 256 (370)
T PF03663_consen 179 WAKKIYDWMRDSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAEKLADAAINH 256 (370)
T ss_dssp HHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcceeEECCCcEEEeCCccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 9998632 2 3332210 0100000 001111111235678889999887 9999999999988753
No 9
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=97.85 E-value=0.0007 Score=71.07 Aligned_cols=171 Identities=14% Similarity=0.002 Sum_probs=110.1
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhhhcchhhhhhhcc-----cccc--cchHHHHHHHHHHcCCHHHHHH
Q 007471 252 LAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTL-----NEEA--GGMNDVLYKLFCITQDPKHLML 324 (602)
Q Consensus 252 ~aGLl~~y~~tG~~~aL~ia~r~aD~~~~~~~~~~~~~~~~~~~~~l-----~~E~--GGm~~~L~~LY~~TGd~ryLdl 324 (602)
..+++..|+. ++++.++++.+.++++.+...+. . ....|... .-.+ .|+..+|..||+.|||++|++.
T Consensus 89 ~~~ll~l~~~-~~~~~l~~a~~~~~~l~~~~~~~-~---~~~~~~~~~~~~~G~~hG~aGi~~~L~~l~~~t~d~~~l~~ 163 (321)
T cd04791 89 GLALLYFART-GDPALLEAAAKIAELLAEALERG-D---PALLWPDFDRVDHGLLHGWAGIALFLLRLYKATGDSRYLEL 163 (321)
T ss_pred HHHHHHHHhc-CChHHHHHHHHHHHHHHHHhhcc-c---cccccccCCCCCCccccCcHHHHHHHHHHHHHHCCHHHHHH
Confidence 3445567888 99999999999999998764321 0 00112110 0012 2788999999999999999999
Q ss_pred Hhhcccc---cccchhhhc------CCC--CCCCCcCCCcchhHHHHHHHHHhCCchHHHHHHHHHHHhhccCeeeccCC
Q 007471 325 AHLFDKP---CFLGLLALQ------ADD--ISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGT 393 (602)
Q Consensus 325 A~~f~~~---~~~~~la~~------~d~--l~g~hant~iP~~~G~a~~Y~~TGD~~y~~aa~~~w~~v~~~~~y~TGG~ 393 (602)
|+...+. .+.. ...+ .+. ....|-+..+ .......|++++|++|++.++...+.+.+..
T Consensus 164 A~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~wchG~aGi--~~~l~~l~~~~~d~~~~~~a~~~~~~~~~~~------- 233 (321)
T cd04791 164 AEEALDKELARAVV-DDGGLLQVDEGARLLPYLCSGSAGL--GLLMLRLEAITGDKRWRDEADGIAHAALSSC------- 233 (321)
T ss_pred HHHHHHHHHHhhcc-CCCCceEcCCCCccCcccCCCcHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh-------
Confidence 9876431 1111 0000 000 0011111000 1223566899999999999998888776421
Q ss_pred CCCCCCCCCCcccCCCCcccccccchhHHHHHHHHHHccCCcchhHHHHHHHHhhhhcccC
Q 007471 394 SVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQ 454 (602)
Q Consensus 394 g~~E~f~~~~~L~~~l~~~~~ETCat~~~l~l~~~L~~~tgd~~YaD~~Er~lyN~ila~~ 454 (602)
+ ...+=+|.+.+++.....+.+.++|.+|.+.+++.. ..++..-
T Consensus 234 -----~-----------~~~~lchG~~G~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 277 (321)
T cd04791 234 -----Y-----------ANPGLFSGTAGLGAHLNDLAAEGDNALYKAAAERLA-LYLIATA 277 (321)
T ss_pred -----c-----------cCccccCCcHhHHHHHHhhcccccChHHHHHHHHHH-HHhcccc
Confidence 0 123467788999999999999999999999999865 6777654
No 10
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=97.75 E-value=0.0018 Score=68.96 Aligned_cols=240 Identities=13% Similarity=0.018 Sum_probs=132.8
Q ss_pred hhhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhhcCCcceecCCCchhhhhhccCCcccccchHHHHHHHHHHHHHH
Q 007471 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTY 261 (602)
Q Consensus 182 ~g~wLsa~a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~~~~~~~~~~~~~~W~pyy~~Hki~aGLl~~y~~ 261 (602)
-|-++.|+..++..|+|+++++.+...++.+..... . ... -+.+ ..++. ++..|+.
T Consensus 27 ~G~~~~gl~~~~~~tgd~~~~~~a~~~~~~~~~~~~--~-----~~~----------~d~~---~~g~~----~~~~y~~ 82 (336)
T PF07470_consen 27 NGVFWYGLLEAYEYTGDERYLDYAERWADRFIEEDG--S-----DYN----------LDDH---DIGFL----LLDLYER 82 (336)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--T-----TTS----------CCGT---THHHH----HHHHHHH
T ss_pred hhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhccC--C-----ccC----------Cchh---hhHHH----HHHHHHH
Confidence 477888888999999999999999999998887776 3 110 0111 12222 2468999
Q ss_pred cCCHhHHHHHHHHHHHHHHHhhhh-hhcchh---hhhhhcccccccchH-HHHHHHHHHcCCHHHHHHHhhccc---ccc
Q 007471 262 ADNAEALRMTTWMVEYFYNRVQNV-IKKYSI---ERHWQTLNEEAGGMN-DVLYKLFCITQDPKHLMLAHLFDK---PCF 333 (602)
Q Consensus 262 tG~~~aL~ia~r~aD~~~~~~~~~-~~~~~~---~~~~~~l~~E~GGm~-~~L~~LY~~TGd~ryLdlA~~f~~---~~~ 333 (602)
||+++.++++.+.+|++.+...+. .+++.. ...+..++.- .|+ ..|+++++.|||++|++.|.+-.. +..
T Consensus 83 t~d~~y~~~~~~~a~~~l~~~~~~~~G~~~~~~~~~~~~wiD~~--~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~ 160 (336)
T PF07470_consen 83 TGDEKYKDAAIQAADWLLARRPRTSDGGFWHNRPYPNQVWIDGM--YMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKYL 160 (336)
T ss_dssp H-THHHHHHHHHHHHHHHHTSCBECTGCBECTTTSTTEEETTHH--HHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCceeeccc--cccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhc
Confidence 999999999999999888765431 111100 0011111111 134 467899999999999998865321 223
Q ss_pred cchhhh----cCCCCCCC-------CcCCCcchhHHHHHHHHHhCC-----chHHHHHHHHHHHhhccCeeeccCCCCCC
Q 007471 334 LGLLAL----QADDISGF-------HSNTHIPIVIGSQMRYEVTGD-----QLHKTISMFFMDIVNSSHTYATGGTSVGE 397 (602)
Q Consensus 334 ~~~la~----~~d~l~g~-------hant~iP~~~G~a~~Y~~TGD-----~~y~~aa~~~w~~v~~~~~y~TGG~g~~E 397 (602)
+++... +.+. .+. .+-.+--.+.|.++.|+...+ +.+++.++.+.+.+.+.+- ..|... -
T Consensus 161 ~d~~tGl~~h~~~~-~~~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~-~~G~w~--~ 236 (336)
T PF07470_consen 161 YDPETGLYYHGYTY-QGYADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQD-EDGLWY--Q 236 (336)
T ss_dssp B-TTTSSBESEEET-TSSSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTST-TTSBEB--S
T ss_pred cCCCCCceeeccCC-CCCcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCC-CCCCcc--e
Confidence 333110 0000 000 000111223678888888644 4666777777776665333 333211 1
Q ss_pred CCCCCCcccCCCCcccccccchhHHHHHHHH-H-HccCCcchhHHHHHHHHhhhhccc-CCCCCC
Q 007471 398 FWSDPKRLASNLDSNTEESCTTYNMLKVSRH-L-FRWTKEIAYADYYERSLTNGVLGI-QRGTEP 459 (602)
Q Consensus 398 ~f~~~~~L~~~l~~~~~ETCat~~~l~l~~~-L-~~~tgd~~YaD~~Er~lyN~ila~-~~~~d~ 459 (602)
.+..| + ...+.||.+|.-+..-.-+ + ..+..+.+|.+.+||+ ++++... .++ ||
T Consensus 237 ~~~~~----~--~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a-~~~l~~~~~~~-dG 293 (336)
T PF07470_consen 237 DLDDP----D--PGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAEKA-LEALLSNAIDP-DG 293 (336)
T ss_dssp BTTTT----T--TTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHH-HHHHHHCEB-T-TS
T ss_pred ecCCC----C--CCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHH-HHHHHhCccCC-CC
Confidence 11111 1 1256677776544333322 2 2334467899999886 4677776 654 44
No 11
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=97.61 E-value=0.0013 Score=69.12 Aligned_cols=181 Identities=13% Similarity=0.012 Sum_probs=108.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhhcCCcceecCCCchhhhhhccCCcccccchHHHHHHHHHHHHHHcCC
Q 007471 185 YLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADN 264 (602)
Q Consensus 185 wLsa~a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~~~~~~~~~~~~~~W~pyy~~Hki~aGLl~~y~~tG~ 264 (602)
.+-++..++.. +|+++.+.+.++++.|.+......++ . .++.. ......+.-=+.+ |..+|+..|+.||+
T Consensus 88 ~~~~ll~l~~~-~~~~~l~~a~~~~~~l~~~~~~~~~~-~-~~~~~-----~~~~~G~~hG~aG--i~~~L~~l~~~t~d 157 (321)
T cd04791 88 IGLALLYFART-GDPALLEAAAKIAELLAEALERGDPA-L-LWPDF-----DRVDHGLLHGWAG--IALFLLRLYKATGD 157 (321)
T ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhhccccc-c-ccccC-----CCCCCccccCcHH--HHHHHHHHHHHHCC
Confidence 44445566667 99999999999999998775521221 1 11000 0000111111122 45667789999999
Q ss_pred HhHHHHHHHHHHHHHHHhhhhhhcch--hhhhhhccccccc--chHHHHHHHHHHcCCHHHHHHHhhcccccccchhhhc
Q 007471 265 AEALRMTTWMVEYFYNRVQNVIKKYS--IERHWQTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQ 340 (602)
Q Consensus 265 ~~aL~ia~r~aD~~~~~~~~~~~~~~--~~~~~~~l~~E~G--Gm~~~L~~LY~~TGd~ryLdlA~~f~~~~~~~~la~~ 340 (602)
++.++.+.+.++++.+.+.+...+.. .+.......--+| ||..++.++|+.|+|++|++.|+...+... ...
T Consensus 158 ~~~l~~A~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~a~~~~~~~~----~~~ 233 (321)
T cd04791 158 SRYLELAEEALDKELARAVVDDGGLLQVDEGARLLPYLCSGSAGLGLLMLRLEAITGDKRWRDEADGIAHAAL----SSC 233 (321)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCceEcCCCCccCcccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh----hhh
Confidence 99999999999999887643211110 0000000000123 788999999999999999999988754321 000
Q ss_pred CCCCCCCCcCCCcchhHH----HHHHHHHhCCchHHHHHHHHHHHhhcc
Q 007471 341 ADDISGFHSNTHIPIVIG----SQMRYEVTGDQLHKTISMFFMDIVNSS 385 (602)
Q Consensus 341 ~d~l~g~hant~iP~~~G----~a~~Y~~TGD~~y~~aa~~~w~~v~~~ 385 (602)
.....-.|- ..| ....++.++|++|++.+.+..+.+..+
T Consensus 234 ~~~~~lchG------~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (321)
T cd04791 234 YANPGLFSG------TAGLGAHLNDLAAEGDNALYKAAAERLALYLIAT 276 (321)
T ss_pred ccCccccCC------cHhHHHHHHhhcccccChHHHHHHHHHHHHhccc
Confidence 011011121 123 234478999999999999888877743
No 12
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=97.53 E-value=0.00099 Score=71.12 Aligned_cols=258 Identities=15% Similarity=0.131 Sum_probs=139.5
Q ss_pred hhhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhhcC-CcceecCCCchhhhhhccCCcccccchHHHHHHHHHHHHH
Q 007471 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIG-SGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYT 260 (602)
Q Consensus 182 ~g~wLsa~a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~-dGYL~~~~~~~~~~~~~~~~~W~pyy~~Hki~aGLl~~y~ 260 (602)
.+..|-..|.++. +++++.++.++.-++.|.+.-.... .||+....... -..... .-|..-.++.|+.. +.
T Consensus 23 q~R~~~~fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~--~~~~~~----~~Y~~af~l~ala~-~~ 94 (346)
T PF07221_consen 23 QARQLYTFARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGG--PLDPQK----DLYDQAFALLALAE-AR 94 (346)
T ss_dssp HHHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTE--EEE--E----EHHHHHHHHHHHHH-HH
T ss_pred eHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCC--CCcccc----chHHHHHHHHHHHH-HH
Confidence 5778888888888 8899999999999999998875334 45654332211 000011 24555567788744 88
Q ss_pred HcCCHhHHHHHHHHHHHHHHHhhhhh-hcch--hhhhhhcc--cccccchHHHHHHHHHHcCCHHHHHHHhhccc---cc
Q 007471 261 YADNAEALRMTTWMVEYFYNRVQNVI-KKYS--IERHWQTL--NEEAGGMNDVLYKLFCITQDPKHLMLAHLFDK---PC 332 (602)
Q Consensus 261 ~tG~~~aL~ia~r~aD~~~~~~~~~~-~~~~--~~~~~~~l--~~E~GGm~~~L~~LY~~TGd~ryLdlA~~f~~---~~ 332 (602)
+||++++++.|.+..+.+.+++.... +.+. ....+... ...+.=+.+++..||++|||++|++.|+.+.+ ..
T Consensus 95 ~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~r~~n~~mhl~eA~l~l~~~~~~~~~~~~a~~l~~~~~~~ 174 (346)
T PF07221_consen 95 ATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDPDWSPPRGQNPHMHLLEAFLALYEATGDPRYLDRAEELLDLFLDR 174 (346)
T ss_dssp CTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETTTSSCBEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhCChhHHHHHHHHHHHHHHHhcccccCcceeccCCccccCCCCChhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875321 1111 00111111 00000123678889999999999999986532 12
Q ss_pred ccchhhh------cCC--CCC-CCCcCCCcc--hhHHHH-------HHHH---HhCCchHHHHHHHHHHHhhccCeeecc
Q 007471 333 FLGLLAL------QAD--DIS-GFHSNTHIP--IVIGSQ-------MRYE---VTGDQLHKTISMFFMDIVNSSHTYATG 391 (602)
Q Consensus 333 ~~~~la~------~~d--~l~-g~hant~iP--~~~G~a-------~~Y~---~TGD~~y~~aa~~~w~~v~~~~~y~TG 391 (602)
|+++... ..| ++. +.+..+-.+ +-.||. ..+. ..+++.+++.+++..+...+.-.-..|
T Consensus 175 f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~~~~~~~~a~~l~~~~~~~G~d~~~ 254 (346)
T PF07221_consen 175 FADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGRGDPDWLERARRLFDFALEHGWDREG 254 (346)
T ss_dssp CHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHCT-HTHHHHHHHHHHHHHHHHBSTTT
T ss_pred HHHhccCeeeeeeccccccccccccccccccCccCCchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHheEecCC
Confidence 2221110 000 000 001000011 224652 2233 457778888888877776653222223
Q ss_pred C-CCCCCCCCCCCcccCCCCcccccccchhHHHHHHHHHHccCCcchhHHHHHHHH---hhhhccc
Q 007471 392 G-TSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSL---TNGVLGI 453 (602)
Q Consensus 392 G-~g~~E~f~~~~~L~~~l~~~~~ETCat~~~l~l~~~L~~~tgd~~YaD~~Er~l---yN~ila~ 453 (602)
| +-. ....... +. ...--.=...+.|+-+-.+++.|||.+|.+.++++. ++.++..
T Consensus 255 gG~~~--~~d~~g~-~~---~~~k~wW~q~Eal~a~~~~~~~tg~~~~~~~~~~~~~~~~~~~~d~ 314 (346)
T PF07221_consen 255 GGLFY--SVDRDGK-PP---DRSKRWWPQAEALKALLAAYELTGDEKYLDWARRVWDYIFRHFIDP 314 (346)
T ss_dssp SSB-S--EEETTS--BS---ST-EEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTB-T
T ss_pred CeEEE--EEeCCCC-cc---ccCccccHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhCCCC
Confidence 3 210 0000010 11 111112223455666677888899999999988876 6665443
No 13
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=97.28 E-value=0.0019 Score=68.92 Aligned_cols=192 Identities=18% Similarity=0.101 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhhcC-CcceecCCCchhhhhhccCCcccccchHHHHHHHHHHHHHHc
Q 007471 184 HYLSASALMWASTHNESLKEKMSAVVSALSACQKEIG-SGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYA 262 (602)
Q Consensus 184 ~wLsa~a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~-dGYL~~~~~~~~~~~~~~~~~W~pyy~~Hki~aGLl~~y~~t 262 (602)
..|-|+|. +..++|++.++.++++++.|.+.-.... .||...++.. +...+ ...| .+|++++-| +.|+++
T Consensus 85 f~l~ala~-~~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~~----~~~~r-~~n~--~mhl~eA~l-~l~~~~ 155 (346)
T PF07221_consen 85 FALLALAE-ARATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDPD----WSPPR-GQNP--HMHLLEAFL-ALYEAT 155 (346)
T ss_dssp HHHHHHHH-HHCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETTT----SSCBE-EHHH--HHHHHHHHH-HHHHHH
T ss_pred HHHHHHHH-HHHhCChhHHHHHHHHHHHHHHHhcccccCcceeccCCc----cccCC-CCCh--hHHHHHHHH-HHHHhc
Confidence 56778888 7889999999999999999988865332 3454333221 10000 0112 268887665 899999
Q ss_pred CCHhHHHHHHHHHHHHHHHhhhhhhcchh---hhhhhccc------------ccccchHHH---HHHHH--HHcCCHHHH
Q 007471 263 DNAEALRMTTWMVEYFYNRVQNVIKKYSI---ERHWQTLN------------EEAGGMNDV---LYKLF--CITQDPKHL 322 (602)
Q Consensus 263 G~~~aL~ia~r~aD~~~~~~~~~~~~~~~---~~~~~~l~------------~E~GGm~~~---L~~LY--~~TGd~ryL 322 (602)
|+++.++.+.++++.+.+++-....+... ...|.+.. .+.|-.-|. |.++. ...++++++
T Consensus 156 ~~~~~~~~a~~l~~~~~~~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~~~~~~ 235 (346)
T PF07221_consen 156 GDPRYLDRAEELLDLFLDRFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGRGDPDWL 235 (346)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHCT-HTHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhccCeeeeeeccccccccccccccccccCccCCchhHHHHHHHHHHHHhcccccHHHH
Confidence 99999999999999998766421111111 12233321 111211232 34444 345789999
Q ss_pred HHHhhccccc---ccchhhhc----CCCCCCCCcCCC-----cchhHHHHHHHHHhCCchHHHHHHHHHHHhhc
Q 007471 323 MLAHLFDKPC---FLGLLALQ----ADDISGFHSNTH-----IPIVIGSQMRYEVTGDQLHKTISMFFMDIVNS 384 (602)
Q Consensus 323 dlA~~f~~~~---~~~~la~~----~d~l~g~hant~-----iP~~~G~a~~Y~~TGD~~y~~aa~~~w~~v~~ 384 (602)
+.|+.+.... .+++...+ .|........+. .=.+.+++..|+.|||+.|++.++..|+.+.+
T Consensus 236 ~~a~~l~~~~~~~G~d~~~gG~~~~~d~~g~~~~~~k~wW~q~Eal~a~~~~~~~tg~~~~~~~~~~~~~~~~~ 309 (346)
T PF07221_consen 236 ERARRLFDFALEHGWDREGGGLFYSVDRDGKPPDRSKRWWPQAEALKALLAAYELTGDEKYLDWARRVWDYIFR 309 (346)
T ss_dssp HHHHHHHHHHHHHHBSTTTSSB-SEEETTS-BSST-EEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHheEecCCCeEEEEEeCCCCccccCccccHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 8887653211 11111100 000000000010 00125778899999999999999999998874
No 14
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=97.12 E-value=0.019 Score=68.54 Aligned_cols=215 Identities=12% Similarity=0.033 Sum_probs=127.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHhhhhc-CCcceecCCCchhhhhhccCCcccccchHHHHHHHHHHHHHHcCCHhH
Q 007471 189 SALMWASTHNESLKEKMSAVVSALSACQKEI-GSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEA 267 (602)
Q Consensus 189 ~a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~-~dGYL~~~~~~~~~~~~~~~~~W~pyy~~Hki~aGLl~~y~~tG~~~a 267 (602)
+..++..++|+.+++.+..+++.+.+..... ..++++.. +| +..+|+..|+.+++++.
T Consensus 550 L~~l~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~D~~~G~-------------------aG--ii~~Ll~l~~~~~~~~~ 608 (825)
T cd04792 550 LTHLGKLLKDDRLLNLAKEILDLIDELIEKDEKLDFISGA-------------------AG--LILVLLSLYELFLSERF 608 (825)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhccccCCCEeeec-------------------HH--HHHHHHHHHhccCChHH
Confidence 3355567899999999999999887654310 11222111 11 23445678899999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcchhhhhhhccccccc--chHHHHHHHHHHcCCHHHHHHHhhccc--ccccchhh-hcC-
Q 007471 268 LRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDK--PCFLGLLA-LQA- 341 (602)
Q Consensus 268 L~ia~r~aD~~~~~~~~~~~~~~~~~~~~~l~~E~G--Gm~~~L~~LY~~TGd~ryLdlA~~f~~--~~~~~~la-~~~- 341 (602)
++++.+.++++.+...................--+| |+..+|.++|+.|+|++|++.|+...+ ...+.+.. ...
T Consensus 609 l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~~~~~~~w~~ 688 (825)
T cd04792 609 LDLALKCGDHLLENASNEDGGIGPAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLFSEEGWNWPR 688 (825)
T ss_pred HHHHHHHHHHHHHhhhhccCCcccccccccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHhhcCCCC
Confidence 999999999987653221000000000000011233 788999999999999999999887543 11111110 000
Q ss_pred -----CCCCCCCcCCCcch-hHHHHHHHHH--hCCchHHHHHHHHHHHhhccCeeeccCCCCCCCCCCCCcccCCCCccc
Q 007471 342 -----DDISGFHSNTHIPI-VIGSQMRYEV--TGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNT 413 (602)
Q Consensus 342 -----d~l~g~hant~iP~-~~G~a~~Y~~--TGD~~y~~aa~~~w~~v~~~~~y~TGG~g~~E~f~~~~~L~~~l~~~~ 413 (602)
......| ..|- .......++. .+|+.+.+.+...-+.+... | + ....
T Consensus 689 ~~~~~~~~~WCh---G~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~~~~~~-----~-------~----------~~~~ 743 (825)
T cd04792 689 KDGNSFSAAWCH---GAPGILLARLELLKFNDLDDEELKEEIEIALKTTLKE-----G-------F----------GNNH 743 (825)
T ss_pred cCcCCCCCcccC---CcHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHh-----c-------C----------CCCC
Confidence 0011122 1111 1223455677 57888877776666555421 0 0 0123
Q ss_pred ccccchhHHHHHHHHHHccCCcchhHHHHHHHHhhh
Q 007471 414 EESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNG 449 (602)
Q Consensus 414 ~ETCat~~~l~l~~~L~~~tgd~~YaD~~Er~lyN~ 449 (602)
+=+|...+.+.+...+.+.++|.+|.+.+++.+-+-
T Consensus 744 slCHG~~Gil~~ll~~~~~~~~~~~~~~a~~~~~~l 779 (825)
T cd04792 744 SLCHGDLGNLEILLYAAKAFGDEKLQELANSLAIKV 779 (825)
T ss_pred eecCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 457888899999999999999999998888765433
No 15
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=97.12 E-value=0.015 Score=65.47 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhhhcch-----------hhhhhh---cccccccchHHHHHHHHHHc
Q 007471 251 ILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYS-----------IERHWQ---TLNEEAGGMNDVLYKLFCIT 316 (602)
Q Consensus 251 i~aGLl~~y~~tG~~~aL~ia~r~aD~~~~~~~~~~~~~~-----------~~~~~~---~l~~E~GGm~~~L~~LY~~T 316 (602)
++.||+.+|.++|++.+|+.|+.++|.++.-|... .+.+ ....|. ..-.|.|.+.+=+..|.++|
T Consensus 160 ~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdTp-tgiP~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~LEF~~LS~lT 238 (522)
T PTZ00470 160 VLGGLLSAYDLTGDEMYLEKAREIADRLLPAFNED-TGFPASEINLATGRKSYPGWAGGCSILSEVGTLQLEFNYLSEIT 238 (522)
T ss_pred hHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCC-CCCCcceeecccCCCCCcccCCCccchhhhhhHHHHHHHHHHhh
Confidence 57899999999999999999999999999887521 1111 001111 11235677777889999999
Q ss_pred CCHHHHHHHhhcc
Q 007471 317 QDPKHLMLAHLFD 329 (602)
Q Consensus 317 Gd~ryLdlA~~f~ 329 (602)
||++|.+.|++..
T Consensus 239 Gd~kY~~~a~~i~ 251 (522)
T PTZ00470 239 GDPKYAEYVDKVM 251 (522)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998864
No 16
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.08 E-value=0.0032 Score=68.99 Aligned_cols=129 Identities=15% Similarity=0.078 Sum_probs=89.2
Q ss_pred Ccc-ccc---hhhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhhcCCcceecCCCchhhhhhccCCcccccchHHH-
Q 007471 176 ELR-GHF---VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHK- 250 (602)
Q Consensus 176 ~lr-Gh~---~g~wLsa~a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~~~~~~~~~~~~~~W~pyy~~Hk- 250 (602)
+|| +|+ .||-++|+.-.++.|+...+.+-+.++.|.|+..-. + -.. . .+-|++|-
T Consensus 123 nlr~~HelY~aghLieg~va~~qaTGkr~lldV~~rlADhi~tvfg--p------~~~----------q--~~g~~gH~e 182 (589)
T COG3533 123 NLRPNHELYCAGHLIEGGVAAHQATGKRRLLDVVCRLADHIATVFG--P------EED----------Q--VPGYCGHPE 182 (589)
T ss_pred ccccchHHHHhHHHHhhhhHHHHhhCcchHHHHHHHHHHhhhhhcC--c------ccc----------c--cccccCCCc
Confidence 344 565 689999999999999999999999999998876543 1 000 0 12344554
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhhhcchhhhhhhccccccc-chHHHHHHHHHHcCCHHHHHHHhhcc
Q 007471 251 ILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAG-GMNDVLYKLFCITQDPKHLMLAHLFD 329 (602)
Q Consensus 251 i~aGLl~~y~~tG~~~aL~ia~r~aD~~~~~~~~~~~~~~~~~~~~~l~~E~G-Gm~~~L~~LY~~TGd~ryLdlA~~f~ 329 (602)
|+.+|+.-|++||+++.|+++++|.++-.... . .+-..++ ..+|--.- -...++++||++|||+.+...+.+|-
T Consensus 183 ielAl~~Ly~~Tg~~rYL~LA~~Fi~~rg~~P--~-~~rg~e~--~~gHAvr~iyl~~G~A~l~~~~gDds~r~~~~~lW 257 (589)
T COG3533 183 IELALAELYRLTGDQRYLDLARRFIHQRGVEP--L-AQRGDEL--EGGHAVRQIYLYIGAADLAEETGDDSLRQAAEFLW 257 (589)
T ss_pred hhHHHHHHHHHhcChHHHHHHHHHHHHhccCh--h-hcCchhh--hhhhHHHHHHHhhhHHHHHHHhCCHHHHHHHHHHH
Confidence 78899999999999999999999988743321 1 1000011 11111000 01257899999999999999999884
No 17
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=96.86 E-value=0.097 Score=54.74 Aligned_cols=218 Identities=16% Similarity=0.103 Sum_probs=131.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhhhh----cCCcceecCCCchhhhhhccCCcccccchHHHHHHHHHHHHHHcC
Q 007471 188 ASALMWASTHNESLKEKMSAVVSALSACQKE----IGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYAD 263 (602)
Q Consensus 188 a~a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~----~~dGYL~~~~~~~~~~~~~~~~~W~pyy~~Hki~aGLl~~y~~tG 263 (602)
++..++..++|+++.+.+.++++.+.+.-.. ...+++... +| +...|+..|+.++
T Consensus 58 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~G~-------------------aG--~~~~ll~~~~~~~ 116 (343)
T cd04434 58 ALAALSKGLGDQELLKELLELLLLLVELILEDLKDLNYDLLSGL-------------------AG--LLLALLLLYKTFG 116 (343)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhcccCCCCcceeech-------------------HH--HHHHHHHHHHhcC
Confidence 3345555789999999999999888765320 011111110 11 3344557788889
Q ss_pred CHhHHHHHHHHHHHHHHHhhhhhhcchhhhhhh-------c-cccccc--chHHHHHHHHHHcCCHHHHHHHhhccc---
Q 007471 264 NAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQ-------T-LNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDK--- 330 (602)
Q Consensus 264 ~~~aL~ia~r~aD~~~~~~~~~~~~~~~~~~~~-------~-l~~E~G--Gm~~~L~~LY~~TGd~ryLdlA~~f~~--- 330 (602)
++..++.+.+.++++.+.......+ ..|. . ..--+| |+..+|.++|+.|.++.+.++++....
T Consensus 117 ~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~g~~HG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 192 (343)
T cd04434 117 EEIFLELIRKILDYLLELGKNGDGK----IRWPMYFPEGRVNLGLAHGLAGILLALLLLYKKTVDKSLEALIKALLKYER 192 (343)
T ss_pred CcCHHHHHHHHHHHHHHhhhhccCC----CceeeeccCCccccchhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 9999999999999998765432110 1110 0 011133 788999999999988888887765432
Q ss_pred ccccchhhhc---------CCCCCCCCcCCCcchhHHHHHHHHHhCCchHHHHHHHHHHHhhccCeeeccCCCCCCCCCC
Q 007471 331 PCFLGLLALQ---------ADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSD 401 (602)
Q Consensus 331 ~~~~~~la~~---------~d~l~g~hant~iP~~~G~a~~Y~~TGD~~y~~aa~~~w~~v~~~~~y~TGG~g~~E~f~~ 401 (602)
..+.+..... .......|-... +.......|+.++|+.+.+.++...+.+.++... +
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~wChG~~G--i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---- 258 (343)
T cd04434 193 RLQDDSGGFWWPSRSNGGNRFLVAWCHGAPG--ILLALLLAYKALGDDKYDEAAEKALELAWKRGLL--------E---- 258 (343)
T ss_pred HccCCCCCCCCCCCCCCCccccceecCCChh--HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhc--------c----
Confidence 1110000000 000011111000 1123456689999999988888777766532110 0
Q ss_pred CCcccCCCCcccccccchhHHHHHHHHHHccCCcchhHHHHHHHHhhhhccc
Q 007471 402 PKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGI 453 (602)
Q Consensus 402 ~~~L~~~l~~~~~ETCat~~~l~l~~~L~~~tgd~~YaD~~Er~lyN~ila~ 453 (602)
....+=+|...+.+....++.+.+++.+|.+..++.. +.++..
T Consensus 259 --------~~~~~lChG~~G~~~~ll~l~~~~~~~~~~~~a~~~~-~~~~~~ 301 (343)
T cd04434 259 --------LKNPGLCHGIAGNLLILLLLYKLTGDLKFLARALALA-LLLISH 301 (343)
T ss_pred --------CCCCCcCcCccchHHHHHHHHHHhCCHHHHHHHHHHH-HHHHHH
Confidence 1235567888999999999999999999999876654 455543
No 18
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=96.61 E-value=0.021 Score=56.08 Aligned_cols=146 Identities=19% Similarity=0.263 Sum_probs=94.9
Q ss_pred CCCCCCcCccccchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhhcCCcceecCCC-c-hhhhhhccCCcccccc
Q 007471 169 GWEEPSCELRGHFVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPT-E-QFDRLEALIPVWAPYY 246 (602)
Q Consensus 169 gWe~~d~~lrGh~~g~wLsa~a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~~-~-~~~~~~~~~~~W~pyy 246 (602)
||.+.=+ -|+-||.++++|..|+|++.++.+++.++-+..--+ +.|-+..+.. . .++..-......+ -
T Consensus 25 gW~Sama------QG~a~s~l~RAy~~t~d~~Yl~aA~~al~~f~~~~~--~GG~~~~~~~~~~wyeEYp~~p~s~V--L 94 (189)
T PF06662_consen 25 GWYSAMA------QGQAISVLARAYQLTGDEKYLDAAKKALNSFKVPVE--EGGVLATFKNKYPWYEEYPTTPPSYV--L 94 (189)
T ss_pred CcHhHHH------HHHHHHHHHHHHHhHCCHHHHHHHHHHHHHhcChHh--hCCeeEEecCCcEeEeecCCCCCCEE--e
Confidence 6876433 489999999999999999999999999998877666 5665544332 1 1111111122222 2
Q ss_pred hHHHH-HHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhhhcchhhhhhh--cc-c----------cc--ccchHHHHH
Q 007471 247 TIHKI-LAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQ--TL-N----------EE--AGGMNDVLY 310 (602)
Q Consensus 247 ~~Hki-~aGLl~~y~~tG~~~aL~ia~r~aD~~~~~~~~~~~~~~~~~~~~--~l-~----------~E--~GGm~~~L~ 310 (602)
+||.. +-||-|++..+++++|.++..+-.+=+.+.+.. +.. ..|. .+ | .. +.-...-|.
T Consensus 95 NGfiysL~GLyd~~~~~~~~~A~~lf~~Gl~sLk~~Lp~----yD~-G~wS~Ydl~h~~~~~~~~~a~~~YH~lHi~qL~ 169 (189)
T PF06662_consen 95 NGFIYSLIGLYDYYRLTGDEEAKELFDKGLKSLKKMLPL----YDT-GSWSRYDLRHFTLGNAPNIARWDYHRLHIQQLK 169 (189)
T ss_pred ehHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh----hhc-CCCchhhccccccccCcCcCcchHHHHHHHHHH
Confidence 46654 788889999999999988877776665554432 111 1111 11 0 00 001124678
Q ss_pred HHHHHcCCHHHHHHHhhcc
Q 007471 311 KLFCITQDPKHLMLAHLFD 329 (602)
Q Consensus 311 ~LY~~TGd~ryLdlA~~f~ 329 (602)
.||.+|||+.+++.|+++.
T Consensus 170 ~L~~it~d~~f~~~a~rW~ 188 (189)
T PF06662_consen 170 WLYSITGDPIFKEYAERWK 188 (189)
T ss_pred HHHHhcCCHHHHHHHHHhc
Confidence 8999999999999999874
No 19
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.029 Score=64.19 Aligned_cols=138 Identities=13% Similarity=0.036 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhhcCCccee-cCCCchhhhhhccCCcccccchHHHHHHHHHHHHHH
Q 007471 183 GHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLS-AFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTY 261 (602)
Q Consensus 183 g~wLsa~a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~-~~~~~~~~~~~~~~~~W~pyy~~Hki~aGLl~~y~~ 261 (602)
|--++|++.++.+++|++..+.+++..+.|.+... .| .|. .+......-..-+.| | . .+..||++.|++
T Consensus 414 glmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~--~~-rl~~~~~~G~a~~~g~leD----Y-A--~~i~gll~lye~ 483 (667)
T COG1331 414 GLMIAALAEAGRVLGDPEYLEAAERAADFILDNLY--VD-RLLRRYRGGEAAVAGLLED----Y-A--FLILGLLALYEA 483 (667)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc--cc-chheeeecCcccccccchh----H-H--HHHHHHHHHHHh
Confidence 78999999999999999999999999999998888 55 321 111100000000111 1 1 245778899999
Q ss_pred cCCHhHHHHHHHHHHHHHHHhhhhhhcchh-hhh--------hhccccc----ccchHHHHHHHHHHcCCHHHHHHHhhc
Q 007471 262 ADNAEALRMTTWMVEYFYNRVQNVIKKYSI-ERH--------WQTLNEE----AGGMNDVLYKLFCITQDPKHLMLAHLF 328 (602)
Q Consensus 262 tG~~~aL~ia~r~aD~~~~~~~~~~~~~~~-~~~--------~~~l~~E----~GGm~~~L~~LY~~TGd~ryLdlA~~f 328 (602)
|++.+.|+.|++++|-+.+.|...-+++-. ... ....+.. .+-+..+|.+|-.+|||.+|++.|...
T Consensus 484 t~d~~yL~~A~~L~~~~i~~f~d~~gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~y~e~A~~~ 563 (667)
T COG1331 484 TGDLAYLEKAIELADEAIADFWDDEGGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGDARYLEAAEDI 563 (667)
T ss_pred hCcHHHHHHHHHHHHHHHHHhcCCCCCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCchhHHHHHHHH
Confidence 999999999999999888877542112100 000 0011111 123558999999999999999999886
Q ss_pred cc
Q 007471 329 DK 330 (602)
Q Consensus 329 ~~ 330 (602)
.+
T Consensus 564 L~ 565 (667)
T COG1331 564 LQ 565 (667)
T ss_pred HH
Confidence 54
No 20
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=96.45 E-value=0.13 Score=61.40 Aligned_cols=229 Identities=13% Similarity=0.092 Sum_probs=126.7
Q ss_pred hhhHHHHHHHH----HHhcCChHHHHHHHHHHHHHHHhhhhcCCcceecCCCchhhhhhccCCcccccchH-HHHHHHHH
Q 007471 182 VGHYLSASALM----WASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTI-HKILAGLL 256 (602)
Q Consensus 182 ~g~wLsa~a~~----~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~~~~~~~~~~~~~~W~pyy~~-Hki~aGLl 256 (602)
+++=+.|++++ +..++|+.+++.+.++++.+.+.-+ .++. ...... .|.| --+...|.
T Consensus 489 LY~G~aGIal~l~~l~~~t~~~~~~~~a~~~l~~l~~~~~--~~~~-~~~~~g--------------l~~G~aGi~~~L~ 551 (825)
T cd04792 489 LYDGSAGIALFLAYLGQLTGDERYTRLARKILDSLVKSLS--ELKT-DDTGIG--------------AFSGLGGILYALT 551 (825)
T ss_pred ccCChHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHh--cccc-cccCce--------------eEechhHHHHHHH
Confidence 45556666644 4467899999999988888776544 1110 000000 1111 01223344
Q ss_pred HHHHHcCCHhHHHHHHHHHHHHHHHhhhhhhcchhhhhhhcccccccchHHHHHHHHHHcCCHHHHHHHhhcccccccch
Q 007471 257 DQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGL 336 (602)
Q Consensus 257 ~~y~~tG~~~aL~ia~r~aD~~~~~~~~~~~~~~~~~~~~~l~~E~GGm~~~L~~LY~~TGd~ryLdlA~~f~~~~~~~~ 336 (602)
..+..+++++.++.+.+.++.+.+..... .....++. ..|+..+|..+|+.|++++++++|+...+.-. ..
T Consensus 552 ~l~~~~~~~~~~~~a~~~~~~l~~~~~~~-------~~~D~~~G-~aGii~~Ll~l~~~~~~~~~l~~a~~~~~~l~-~~ 622 (825)
T cd04792 552 HLGKLLKDDRLLNLAKEILDLIDELIEKD-------EKLDFISG-AAGLILVLLSLYELFLSERFLDLALKCGDHLL-EN 622 (825)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhccc-------cCCCEeee-cHHHHHHHHHHHhccCChHHHHHHHHHHHHHH-Hh
Confidence 66788999999999999888765432210 00011111 23677899999999999999999887644211 10
Q ss_pred hhhcCC---------CCCCCCcCCCcchhHHHHHHHHHhCCchHHHHHHHHHHHhhccCeeeccCCCCCCCCCCCCcccC
Q 007471 337 LALQAD---------DISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLAS 407 (602)
Q Consensus 337 la~~~d---------~l~g~hant~iP~~~G~a~~Y~~TGD~~y~~aa~~~w~~v~~~~~y~TGG~g~~E~f~~~~~L~~ 407 (602)
.....+ ...-.|-.+. +..-.+..|+.++|+.|++++...++.... + +..++ ..|..+. .+
T Consensus 623 ~~~~~~~~~~~~~~~~~G~aHG~sG--i~~aL~~l~~~~~d~~~~~~a~~~l~~~~~-~-~~~~~----~~w~~~~--~~ 692 (825)
T cd04792 623 ASNEDGGIGPAEQPNLTGFAHGASG--IAWALLRLYKVTGDSRYLKLAHKALKYERR-L-FSEEG----WNWPRKD--GN 692 (825)
T ss_pred hhhccCCcccccccccccccccHHH--HHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-h-cCHhh----cCCCCcC--cC
Confidence 000000 0001111000 012235668999999999999888875432 2 21111 1121110 01
Q ss_pred CCCcccccccchhHHHHHHHHHHcc--CCcchhHHHHHHHHhh
Q 007471 408 NLDSNTEESCTTYNMLKVSRHLFRW--TKEIAYADYYERSLTN 448 (602)
Q Consensus 408 ~l~~~~~ETCat~~~l~l~~~L~~~--tgd~~YaD~~Er~lyN 448 (602)
.....=+..+.+.+.....+.+. ..|..+.+.+++++-.
T Consensus 693 --~~~~~WChG~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~~ 733 (825)
T cd04792 693 --SFSAAWCHGAPGILLARLELLKFNDLDDEELKEEIEIALKT 733 (825)
T ss_pred --CCCCcccCCcHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 11123344556677666777777 5788888888887543
No 21
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=96.30 E-value=0.029 Score=65.45 Aligned_cols=119 Identities=14% Similarity=0.210 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhhcCC-cceecCCCchhhhhhccCCcccccchHHHHHHHHHHHHHH
Q 007471 183 GHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGS-GYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTY 261 (602)
Q Consensus 183 g~wLsa~a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~d-GYL~~~~~~~~~~~~~~~~~W~pyy~~Hki~aGLl~~y~~ 261 (602)
+-++-|++..+..+.|..|.+.+...|..|..+-++..+ +|++.- +| +..-|+..|+.
T Consensus 699 ~g~~yal~~I~~~~~~~~l~~~~~~~i~~le~~v~~~~~~d~i~Gl-------------------~g--~i~~L~~iYk~ 757 (963)
T COG4403 699 SGYFYALWKIYSVTRDNYLIQSAENSIRHLEILVQKSKDPDFINGL-------------------AG--VICVLVSIYKL 757 (963)
T ss_pred chhhhhhHHHHHhcccHHHHHHHHHHHHHHHHHHhhccCcchhhcc-------------------HH--HHHHHHHHHhh
Confidence 456778888899999999999999999988887663322 333221 01 23346689999
Q ss_pred cCCHhHHHHHHHHHHHHHHHhhhhhhcchhhhhhhcc-ccccc--chHHHHHHHHHHcCCHHHHHHHhhc
Q 007471 262 ADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTL-NEEAG--GMNDVLYKLFCITQDPKHLMLAHLF 328 (602)
Q Consensus 262 tG~~~aL~ia~r~aD~~~~~~~~~~~~~~~~~~~~~l-~~E~G--Gm~~~L~~LY~~TGd~ryLdlA~~f 328 (602)
+..++.+++|+..++++++..... +....++ .-.+| |+..+|.+||++|||++++..++..
T Consensus 758 ~~epk~l~~ais~~~~l~~~~v~~------d~s~~~l~gfshg~sgi~~tL~~ly~~T~e~~l~~~i~e~ 821 (963)
T COG4403 758 TDEPKFLELAISLGRILMEKIVGN------DSSETVLLGFSHGASGIILTLLKLYEATGEESLLKKIKEL 821 (963)
T ss_pred ccchHHHHHHHHHHHHHHHHhhcc------ccccceecccccchHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999999999999999999764421 1111122 23344 7889999999999999999998764
No 22
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=96.26 E-value=0.025 Score=63.06 Aligned_cols=189 Identities=16% Similarity=0.159 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHc--CCHhHHHHHHHHHHHHHHHhhhhhhcchhh---------hhhh---cccccccchHHHHHHHHHHc
Q 007471 251 ILAGLLDQYTYA--DNAEALRMTTWMVEYFYNRVQNVIKKYSIE---------RHWQ---TLNEEAGGMNDVLYKLFCIT 316 (602)
Q Consensus 251 i~aGLl~~y~~t--G~~~aL~ia~r~aD~~~~~~~~~~~~~~~~---------~~~~---~l~~E~GGm~~~L~~LY~~T 316 (602)
++.||+.+|+++ +++.+|+.|+.+||.+...|.. ..+.+.. ..+. ..-.|.|.+.+=+.+|.++|
T Consensus 82 ~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t-~~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~lT 160 (452)
T PF01532_consen 82 VLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFDT-PTGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQLT 160 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSS-SSS---SEEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhccC-CCccccceeeecccCCCCCCCCcccccccccceechhHHHHHh
Confidence 579999999999 9999999999999999888752 1111110 0011 01134577778889999999
Q ss_pred CCHHHHHHHhhcccccccch-hhhcCCCCCCCCc--CCCcch----hHH---------HHHHHHHhC--CchHHHHHHHH
Q 007471 317 QDPKHLMLAHLFDKPCFLGL-LALQADDISGFHS--NTHIPI----VIG---------SQMRYEVTG--DQLHKTISMFF 378 (602)
Q Consensus 317 Gd~ryLdlA~~f~~~~~~~~-la~~~d~l~g~ha--nt~iP~----~~G---------~a~~Y~~TG--D~~y~~aa~~~ 378 (602)
||++|.+.|++..+.-. .. .....+.|-+.+. .+..++ .+| ..+.|.++| |+.|++.-...
T Consensus 161 gd~kY~~~a~~~~~~l~-~~~~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~YEYLlK~~lL~g~~d~~~~~~~~~a 239 (452)
T PF01532_consen 161 GDPKYFDAADRIYDALW-RSQNRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSFYEYLLKMYLLLGGTDEQYRDMYDEA 239 (452)
T ss_dssp S-THHHHHHHHHHHHHH-CCCCCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHHHHHHHHHHHHTTTTTHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHH-HhhhccCCcccCcceecCCcCcccccccccCCCcchHHHhhhhhhhhcCccchHHHHHHHHH
Confidence 99999999988643100 00 0000111111111 111111 122 467789999 88888877777
Q ss_pred HHHhhccCeeeccCCCCCC--CCCCCCcc-cCC--CCcccccccchhHHHHHHHHHHccCCcchhHHHHHHH
Q 007471 379 MDIVNSSHTYATGGTSVGE--FWSDPKRL-ASN--LDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERS 445 (602)
Q Consensus 379 w~~v~~~~~y~TGG~g~~E--~f~~~~~L-~~~--l~~~~~ETCat~~~l~l~~~L~~~tgd~~YaD~~Er~ 445 (602)
.+.+.+ |+.........+ .|-..... .+. ......=+|-.-+|+.+..+++ ++.++.+..++.
T Consensus 240 ~~~i~~-~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~~~~---~~~~~~~~A~~l 307 (452)
T PF01532_consen 240 VDAIKK-HLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGAKLF---NDEGDLELAEEL 307 (452)
T ss_dssp HHHHHH-HTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHHHTT---TCHHHHHHHHHH
T ss_pred HHHHHH-HhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhhccc---CchhHHHHHHHH
Confidence 777764 433331111101 11111000 000 0244578999999999999888 345555555554
No 23
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=96.23 E-value=0.3 Score=51.01 Aligned_cols=230 Identities=11% Similarity=0.055 Sum_probs=131.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhhhhcCC---cceecCCCchhhhhhccCCcccccchHHHHHHHHHHHHHHcCC
Q 007471 188 ASALMWASTHNESLKEKMSAVVSALSACQKEIGS---GYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADN 264 (602)
Q Consensus 188 a~a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~d---GYL~~~~~~~~~~~~~~~~~W~pyy~~Hki~aGLl~~y~~tG~ 264 (602)
.+..++..++|+.+++.+..+++.+...-...++ |.+.. + ++ +...+...|+.+++
T Consensus 10 ~l~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~G---------------~----~G--i~~~l~~l~~~~~~ 68 (343)
T cd04434 10 LLLELYRVTPDEKYQDLAHKALEYIVKSLSSLPDTDISLFSG---------------L----AG--IAYALAALSKGLGD 68 (343)
T ss_pred HHHHHHhccCCccHHHHHHHHHHHHHHHHHhCCCCCeeeecc---------------h----HH--HHHHHHHHHHHcCC
Confidence 3446677888999999999999988876552211 11111 0 11 23334467788999
Q ss_pred HhHHHHHHHHHHHHHHHhhhhhhcchhhhhhhcccccccchHHHHHHHHHHcCCHHHHHHHhhcccccccchhhhcCCCC
Q 007471 265 AEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDI 344 (602)
Q Consensus 265 ~~aL~ia~r~aD~~~~~~~~~~~~~~~~~~~~~l~~E~GGm~~~L~~LY~~TGd~ryLdlA~~f~~~~~~~~la~~~d~l 344 (602)
++.++.+.+.++.+.+..... ........++. ..|+-.+|..+|+.|+++.++++++...+.-. .......+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~~~G-~aG~~~~ll~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~ 142 (343)
T cd04434 69 QELLKELLELLLLLVELILED----LKDLNYDLLSG-LAGLLLALLLLYKTFGEEIFLELIRKILDYLL-ELGKNGDGKI 142 (343)
T ss_pred HHHHHHHHHHHHHhhhhhhcc----cCCCCcceeec-hHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH-HhhhhccCCC
Confidence 999999999888876653210 00000011111 12677899999999999999998877643210 0000000000
Q ss_pred CC----CCcCCCcchhHH-------HHHHHHHhCCchHHHHHHHHHHHhhccCeeeccCCCCCCCCCCCCcccCCCCccc
Q 007471 345 SG----FHSNTHIPIVIG-------SQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNT 413 (602)
Q Consensus 345 ~g----~hant~iP~~~G-------~a~~Y~~TGD~~y~~aa~~~w~~v~~~~~y~TGG~g~~E~f~~~~~L~~~l~~~~ 413 (602)
.. .+.....=...| .+..|+.+.|+.+.++++...+...+. ....+++ |.+... .+......
T Consensus 143 ~~~~~~~~~~~~~g~~HG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~-~~~~~~~~ 215 (343)
T cd04434 143 RWPMYFPEGRVNLGLAHGLAGILLALLLLYKKTVDKSLEALIKALLKYERRL-QDDSGGF-----WWPSRS-NGGNRFLV 215 (343)
T ss_pred ceeeeccCCccccchhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHc-cCCCCCC-----CCCCCC-CCCccccc
Confidence 00 000000111222 356688888888888887777655432 1112221 111000 00001223
Q ss_pred ccccchhHHHHHHHHHHccCCcchhHHHHHHHHhhhhc
Q 007471 414 EESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVL 451 (602)
Q Consensus 414 ~ETCat~~~l~l~~~L~~~tgd~~YaD~~Er~lyN~il 451 (602)
.=+..+.+++.....+.+.++|..+.+.+++++-+.+-
T Consensus 216 ~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (343)
T cd04434 216 AWCHGAPGILLALLLAYKALGDDKYDEAAEKALELAWK 253 (343)
T ss_pred eecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 45556788888889999999999999999988765543
No 24
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=95.84 E-value=0.72 Score=48.97 Aligned_cols=234 Identities=17% Similarity=0.156 Sum_probs=132.2
Q ss_pred hhhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhhcCCcceecCCCchhhhhhccCCcccccchHHHHHHH--HHHHH
Q 007471 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAG--LLDQY 259 (602)
Q Consensus 182 ~g~wLsa~a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~~~~~~~~~~~~~~W~pyy~~Hki~aG--Ll~~y 259 (602)
.|=.|.|++..|..|+|++..+.+..++|... . .+| + +. ++.-| |.+| |+.-|
T Consensus 38 ~GV~lyGv~~~~eAT~d~~yl~~l~~~~d~~i---~--~~g-~---~~---------------~~id~-i~~g~~L~~L~ 92 (357)
T COG4225 38 QGVFLYGVARAYEATGDAEYLDYLKTWFDEQI---D--EGG-L---PP---------------RNIDH-IAAGLTLLPLY 92 (357)
T ss_pred ccchHHHHHHHHHHcCcHHHHHHHHHHHHhhh---c--cCC-C---Cc---------------cchhh-hccCceeeehh
Confidence 47889999999999999999999999888654 1 344 2 11 11111 1122 34679
Q ss_pred HHcCCHhHHHHHHHHHHHHHHHhhhhhhc------chhhhhhhcccccccchH-HHHHHHHHHcCCHHHHHHHhh-c-cc
Q 007471 260 TYADNAEALRMTTWMVEYFYNRVQNVIKK------YSIERHWQTLNEEAGGMN-DVLYKLFCITQDPKHLMLAHL-F-DK 330 (602)
Q Consensus 260 ~~tG~~~aL~ia~r~aD~~~~~~~~~~~~------~~~~~~~~~l~~E~GGm~-~~L~~LY~~TGd~ryLdlA~~-f-~~ 330 (602)
+.||+++.|+.++++++|+.....-..++ ++ +++|.. .-+ |. .-++++-+.+|+++|+|=|-+ | .+
T Consensus 93 e~T~~~~Yl~~a~~~a~~l~~~~Rt~eG~f~H~~~~p-~Q~W~D--tL~--Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~ 167 (357)
T COG4225 93 EQTGDPRYLEAAIKLASWLVHEPRTKEGGFQHKVKYP-HQMWLD--TLY--MAGLFLAKYGQVTGRPEYFDEALYQFSLH 167 (357)
T ss_pred hhhCCHHHHHHHHHHHHHHhhCcccCCCccccccCch-hHhhhc--chh--hhhHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999999999999998764211111 21 244431 111 11 346788899999999987643 3 22
Q ss_pred c-cccchhh----hcCCC---CCCCCcCCCcchh----HHH-----HHHHHHhCC-----chHHHHHHHHHHHhhccCee
Q 007471 331 P-CFLGLLA----LQADD---ISGFHSNTHIPIV----IGS-----QMRYEVTGD-----QLHKTISMFFMDIVNSSHTY 388 (602)
Q Consensus 331 ~-~~~~~la----~~~d~---l~g~hant~iP~~----~G~-----a~~Y~~TGD-----~~y~~aa~~~w~~v~~~~~y 388 (602)
. ..-||.. .+=|. -+..|..+..|.+ +|. ++.-++--+ ..+.+..+...+.+.+.+.
T Consensus 168 ~~~l~Dp~TGL~YH~wd~~~~~~w~~~~sG~~~fWaRg~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r~Qd- 246 (357)
T COG4225 168 EKYLRDPETGLYYHGWDEDGTMPWANNESGEPAFWARGNGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIRYQD- 246 (357)
T ss_pred HHHccCCCcCceEEeeccCCCCccccccCCCceeeecccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhhc-
Confidence 1 1112110 00011 1123444555665 443 333333221 2456677777777776655
Q ss_pred eccCCCCCCCCCCCCcccCCCCcccccccchhHHHHHHHH-HHccCCcchhHHHHHHHHhhhhcccCC
Q 007471 389 ATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRH-LFRWTKEIAYADYYERSLTNGVLGIQR 455 (602)
Q Consensus 389 ~TGG~g~~E~f~~~~~L~~~l~~~~~ETCat~~~l~l~~~-L~~~tgd~~YaD~~Er~lyN~ila~~~ 455 (602)
.+|= |.. -|-+..+..+.||-+|...+.-.-+ +-+=--+++|+-..||+ |-+|+..+.
T Consensus 247 e~Gl------W~t--iLDd~~~~sy~EsSaSa~faYallkgi~~G~l~~~~~~~~~kA-~~aLl~~i~ 305 (357)
T COG4225 247 ESGL------WHT--ILDDGRPGSYLESSASAGFAYALLKGINLGILDPEYAPVAEKA-LDALLGHID 305 (357)
T ss_pred cccc------hhh--hhccCCCCCchhhhHHHHHHHHHHHHHhcCCCCchhhHHHHHH-HHHHHhhcc
Confidence 4442 211 0111113568888888766553322 21222367788888876 456666654
No 25
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=95.84 E-value=0.041 Score=54.12 Aligned_cols=132 Identities=19% Similarity=0.117 Sum_probs=76.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHhhcccccccchhhhcC------C--CC-------CCCC-cCCCcchhHHHHHHHHHhCCc
Q 007471 306 NDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQA------D--DI-------SGFH-SNTHIPIVIGSQMRYEVTGDQ 369 (602)
Q Consensus 306 ~~~L~~LY~~TGd~ryLdlA~~f~~~~~~~~la~~~------d--~l-------~g~h-ant~iP~~~G~a~~Y~~TGD~ 369 (602)
..+|+|+|++|||++||++|++..+.- ..+..++. + .+ +..| -|.+|=.++|.-..+..++++
T Consensus 36 ~s~l~RAy~~t~d~~Yl~aA~~al~~f-~~~~~~GG~~~~~~~~~~wyeEYp~~p~s~VLNGfiysL~GLyd~~~~~~~~ 114 (189)
T PF06662_consen 36 ISVLARAYQLTGDEKYLDAAKKALNSF-KVPVEEGGVLATFKNKYPWYEEYPTTPPSYVLNGFIYSLIGLYDYYRLTGDE 114 (189)
T ss_pred HHHHHHHHHhHCCHHHHHHHHHHHHHh-cChHhhCCeeEEecCCcEeEeecCCCCCCEEeehHHHHHHHHHHHHHhcCCH
Confidence 468899999999999999999854321 11111110 1 00 1111 133444457777778899998
Q ss_pred hHHHHHHHHHHHhhcc-CeeeccCCCCCC--CCCCCCcccCCCCcccccccchhHHHHHHHHHHccCCcchhHHHHHH
Q 007471 370 LHKTISMFFMDIVNSS-HTYATGGTSVGE--FWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYER 444 (602)
Q Consensus 370 ~y~~aa~~~w~~v~~~-~~y~TGG~g~~E--~f~~~~~L~~~l~~~~~ETCat~~~l~l~~~L~~~tgd~~YaD~~Er 444 (602)
+..+.-+...+.+.+. ..|-+|+.+... |+.. ...|+.-.-.|. .. -+.....|..+|+|+.+.+++||
T Consensus 115 ~A~~lf~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~~-~~~~~~a~~~YH--~l---Hi~qL~~L~~it~d~~f~~~a~r 186 (189)
T PF06662_consen 115 EAKELFDKGLKSLKKMLPLYDTGSWSRYDLRHFTL-GNAPNIARWDYH--RL---HIQQLKWLYSITGDPIFKEYAER 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCchhhcccccc-ccCcCcCcchHH--HH---HHHHHHHHHHhcCCHHHHHHHHH
Confidence 7766666655554322 467778776422 2221 111220001121 11 34456678889999999999997
No 26
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=95.80 E-value=0.25 Score=52.82 Aligned_cols=192 Identities=14% Similarity=0.085 Sum_probs=107.2
Q ss_pred hHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhhhhcCCcceecCCCchhhhhhcc-CCcccccchHHHHHHHHHHHHHH
Q 007471 184 HYLSASALMWASTHN-ESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEAL-IPVWAPYYTIHKILAGLLDQYTY 261 (602)
Q Consensus 184 ~wLsa~a~~~a~t~D-~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~~~~~~~~~~~-~~~W~pyy~~Hki~aGLl~~y~~ 261 (602)
=.+.++..++..+++ +.+++.++.+++.+.+.-+...+......+. .+ .|.+. .-.|+-=..| |..+|+..+..
T Consensus 105 G~l~~Ll~l~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~-~~-~~~~~~~~G~aHG~aG--I~~~L~~~~~~ 180 (343)
T cd04794 105 GYLYALLFLNKKFGFKKIPSSLIKSICDAILESGRTGAAKYRAPCPL-MY-EWHGKEYLGAAHGLAG--ILYILLQTPLF 180 (343)
T ss_pred HHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhhhccCCCCCc-cc-cccCceecchhhhHHH--HHHHHHhhhhh
Confidence 356666677777763 4567778888877665422112221111111 00 01100 0112100111 45566677888
Q ss_pred cCCHhHHHHHHHHHHHHHHHhhhhhhcchh--hh--hhhccccccc--chHHHHHHHHHHcCCHHHHHHHhhccccccc-
Q 007471 262 ADNAEALRMTTWMVEYFYNRVQNVIKKYSI--ER--HWQTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDKPCFL- 334 (602)
Q Consensus 262 tG~~~aL~ia~r~aD~~~~~~~~~~~~~~~--~~--~~~~l~~E~G--Gm~~~L~~LY~~TGd~ryLdlA~~f~~~~~~- 334 (602)
+++++.++.+.+..+++.+...+. ..++. .. ......==+| |+...+..+|+.++|+++++.|+.-.+..+.
T Consensus 181 ~~~~~~~~~i~~~i~~~~~~~~~~-g~w~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (343)
T cd04794 181 LLKPSLAPLIKRSLDYLLSLQFPS-GNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAYLVFKEEQYLEAAIKCGELIWKR 259 (343)
T ss_pred cCCccHHHHHHHHHHHHHHhhccC-CCCCCccCCCCCCccccccCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 899999999999999988653211 11100 00 0000000033 7889999999999999999988775432110
Q ss_pred chhhhcCCCCCCCCcCCCcchhHHHHHHHHHhCCchHHHHHHHHHHHhhcc
Q 007471 335 GLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSS 385 (602)
Q Consensus 335 ~~la~~~d~l~g~hant~iP~~~G~a~~Y~~TGD~~y~~aa~~~w~~v~~~ 385 (602)
+.. .....-.|-... +..+....|+.|+|+++++.|..+.+.+.++
T Consensus 260 g~~---~~~~~lCHG~~G--~~~~lL~~~~~~~~~~~~~~a~~~~~~~~~~ 305 (343)
T cd04794 260 GLL---KKGPGLCHGIAG--NAYAFLLLYRLTGDLKYLYRACKFAEFLINY 305 (343)
T ss_pred CCc---cCCCccccCccc--hHHHHHHHHHHhCcHHHHHHHHHHHHHHhcc
Confidence 000 011112332222 1345678899999999999999999988754
No 27
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=95.76 E-value=0.048 Score=58.08 Aligned_cols=132 Identities=16% Similarity=0.034 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHhhcccccccchhhhcCCCCCCCCcCCCcchhHHHHHHHHHhCCchHHHHHHHHHH-Hhh
Q 007471 305 MNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMD-IVN 383 (602)
Q Consensus 305 m~~~L~~LY~~TGd~ryLdlA~~f~~~~~~~~la~~~d~l~g~hant~iP~~~G~a~~Y~~TGD~~y~~aa~~~w~-~v~ 383 (602)
+-.+|..+|+.|||++|++.|+.+.+... ..... ..+.+++ .........|+.|||++|++++....+ .+.
T Consensus 30 ~~~gl~~~~~~tgd~~~~~~a~~~~~~~~-~~~~~------~~~~d~~-~~g~~~~~~y~~t~d~~y~~~~~~~a~~~l~ 101 (336)
T PF07470_consen 30 FWYGLLEAYEYTGDERYLDYAERWADRFI-EEDGS------DYNLDDH-DIGFLLLDLYERTGDEKYKDAAIQAADWLLA 101 (336)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHH-HHHHT------TTSCCGT-THHHHHHHHHHHH-THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-hccCC------ccCCchh-hhHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45678899999999999999998754322 11111 1122222 233334678999999999999999999 454
Q ss_pred ccCeeeccCCCCCCCCCCCCcccCCCCcccccccchhH-HHHHHHHHHccCCcchhHHHHHHHHhhhhcccCCC
Q 007471 384 SSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYN-MLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRG 456 (602)
Q Consensus 384 ~~~~y~TGG~g~~E~f~~~~~L~~~l~~~~~ETCat~~-~l~l~~~L~~~tgd~~YaD~~Er~lyN~ila~~~~ 456 (602)
+..--..||+...+. ....--|-+.- .+-+.-++...|||++|.|.+.+-+-...--..++
T Consensus 102 ~~~~~~~G~~~~~~~------------~~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~~d~ 163 (336)
T PF07470_consen 102 RRPRTSDGGFWHNRP------------YPNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKYLYDP 163 (336)
T ss_dssp TSCBECTGCBECTTT------------STTEEETTHHHHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHHHB-T
T ss_pred hCCCCCCCccccCCC------------CCCceeeccccccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhccCC
Confidence 332224565543110 01111122221 23344455788999999998887765554445554
No 28
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=95.74 E-value=0.21 Score=53.95 Aligned_cols=192 Identities=16% Similarity=0.084 Sum_probs=110.2
Q ss_pred CccccchhhHHHHHHHHHHhcCCh---HHHHHHHHHHHHHHHhhhhcCCcceecCCCchhhhhhccCCcccccchHHHHH
Q 007471 176 ELRGHFVGHYLSASALMWASTHNE---SLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKIL 252 (602)
Q Consensus 176 ~lrGh~~g~wLsa~a~~~a~t~D~---~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~~~~~~~~~~~~~~W~pyy~~Hki~ 252 (602)
|+.+|.+ -|=|+|.. +..+++ ++++.+-.+++....-++.+--||.-+.+-.. -. ..+. .+|+++
T Consensus 114 d~Y~haF--allA~A~~-a~a~~~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~~~~~~~---pl-~sNp-----~MHl~E 181 (388)
T COG2942 114 DLYGHAF--ALLAAAHA-ATAGPPRADELLDEALDVLERRFWREEHPLGGFEEDNPGSA---PL-GSNP-----HMHLLE 181 (388)
T ss_pred hHHHHHH--HHHHHHHH-HhcCChhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCC---cc-CCCc-----chHHHH
Confidence 5555543 23444443 333444 56666667777776666654455655443211 10 1121 478776
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhhhcchh---hhhhhccccccc-------chH--HHHHHHHHHcCCHH
Q 007471 253 AGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSI---ERHWQTLNEEAG-------GMN--DVLYKLFCITQDPK 320 (602)
Q Consensus 253 aGLl~~y~~tG~~~aL~ia~r~aD~~~~~~~~~~~~~~~---~~~~~~l~~E~G-------Gm~--~~L~~LY~~TGd~r 320 (602)
| +++.|+++|.+..++.+.+.|+-++.+|-....+.-. +.-|.+.+.+.| +++ --|.++.+..|+..
T Consensus 182 A-~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~dW~p~~~frg~~~ePGH~fEW~~Lll~~a~~~~~~~ 260 (388)
T COG2942 182 A-MLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHDWNPAHGFRGRGIEPGHQFEWAWLLLDIARRRGRAW 260 (388)
T ss_pred H-HHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhccccCCcCCCcccCCCCCchHHHHHHHHHHHHHHhchhH
Confidence 5 5589999999999999999999999987643211110 122443333322 122 35678888899999
Q ss_pred HHHHHhhcccccccchhhhcCCCCC-CCC------cCCCc------chh--HHHHH-HHHHhC-CchHHHHHHHHHHHhh
Q 007471 321 HLMLAHLFDKPCFLGLLALQADDIS-GFH------SNTHI------PIV--IGSQM-RYEVTG-DQLHKTISMFFMDIVN 383 (602)
Q Consensus 321 yLdlA~~f~~~~~~~~la~~~d~l~-g~h------ant~i------P~~--~G~a~-~Y~~TG-D~~y~~aa~~~w~~v~ 383 (602)
.+..|++..+.. ++.+-|.-. +.+ ...|- |.. +++|+ .+..|| ++.|.+...++|+...
T Consensus 261 l~~~A~~lf~~a----~~~g~d~~~gg~~~sl~~D~~~~d~~~r~WpQ~E~l~AA~ala~~~~~~~~y~~~~~R~~~~~~ 336 (388)
T COG2942 261 LIEAARRLFDIA----VADGWDPERGGAYYSLDDDGSPHDRQQRLWPQTEALKAAVALAETTGARERYWQWYARAWDYLW 336 (388)
T ss_pred HHHHHHHHHHHH----HHhccCcccCeEEEEecCCCCcCCHHHhhChHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 999999875422 111111100 000 11122 222 45544 478888 8899888888888876
Q ss_pred c
Q 007471 384 S 384 (602)
Q Consensus 384 ~ 384 (602)
.
T Consensus 337 ~ 337 (388)
T COG2942 337 W 337 (388)
T ss_pred H
Confidence 4
No 29
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=95.54 E-value=0.047 Score=57.64 Aligned_cols=188 Identities=15% Similarity=0.075 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhhhcchhhhhhhcccccccchHHHHHHHHHHcCCHHHHHHHhhccc
Q 007471 251 ILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDK 330 (602)
Q Consensus 251 i~aGLl~~y~~tG~~~aL~ia~r~aD~~~~~~~~~~~~~~~~~~~~~l~~E~GGm~~~L~~LY~~TGd~ryLdlA~~f~~ 330 (602)
.+.|+..+|++||+++.|+.+++.+|....+=+ ++... ++... +-..|+-||+.|||++||++|....+
T Consensus 41 ~lyGv~~~~eAT~d~~yl~~l~~~~d~~i~~~g--~~~~~-------id~i~--~g~~L~~L~e~T~~~~Yl~~a~~~a~ 109 (357)
T COG4225 41 FLYGVARAYEATGDAEYLDYLKTWFDEQIDEGG--LPPRN-------IDHIA--AGLTLLPLYEQTGDPRYLEAAIKLAS 109 (357)
T ss_pred hHHHHHHHHHHcCcHHHHHHHHHHHHhhhccCC--CCccc-------hhhhc--cCceeeehhhhhCCHHHHHHHHHHHH
Confidence 357888999999999999999999888765421 11011 11000 11468889999999999999887643
Q ss_pred ccccchhhhcCCCCCCC-CcCC---Ccch---hHH---HHHHHHHhCCchHHH-HHHHHHHHhhccCeeeccCCCCCCCC
Q 007471 331 PCFLGLLALQADDISGF-HSNT---HIPI---VIG---SQMRYEVTGDQLHKT-ISMFFMDIVNSSHTYATGGTSVGEFW 399 (602)
Q Consensus 331 ~~~~~~la~~~d~l~g~-hant---~iP~---~~G---~a~~Y~~TGD~~y~~-aa~~~w~~v~~~~~y~TGG~g~~E~f 399 (602)
.-.-.+ +..-.++ |-.- ++-. .+| .++.-.++|+++|.+ +...|+..+..-+==.||=.= ..|
T Consensus 110 ~l~~~~----Rt~eG~f~H~~~~p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~~~l~Dp~TGL~Y--H~w 183 (357)
T COG4225 110 WLVHEP----RTKEGGFQHKVKYPHQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHEKYLRDPETGLYY--HGW 183 (357)
T ss_pred HHhhCc----ccCCCccccccCchhHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHccCCCcCceE--Eee
Confidence 111001 0000111 1100 1100 244 366679999999975 677787765432222233110 011
Q ss_pred CCCCccc--CCCCc-----ccccccchhHHHHHHHHHHccCCcchhHHHHHHHHhhhhcccCC
Q 007471 400 SDPKRLA--SNLDS-----NTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQR 455 (602)
Q Consensus 400 ~~~~~L~--~~l~~-----~~~ETCat~~~l~l~~~L~~~tgd~~YaD~~Er~lyN~ila~~~ 455 (602)
..+...| +.... +-.-.=.++.+..+.+.|=.-.++..+..-.=|.+.-+|+.-|+
T Consensus 184 d~~~~~~w~~~~sG~~~fWaRg~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r~Qd 246 (357)
T COG4225 184 DEDGTMPWANNESGEPAFWARGNGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIRYQD 246 (357)
T ss_pred ccCCCCccccccCCCceeeecccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhhc
Confidence 1111000 00000 11233456677777777766666655555444555556666565
No 30
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=95.29 E-value=0.15 Score=56.90 Aligned_cols=262 Identities=8% Similarity=0.043 Sum_probs=134.0
Q ss_pred chhhHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHhhhhcCCcceecCCCchhhhhhccCCcccccc-hHHH-----HH
Q 007471 181 FVGHYLSASALMWAST--HNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYY-TIHK-----IL 252 (602)
Q Consensus 181 ~~g~wLsa~a~~~a~t--~D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~~~~~~~~~~~~~~W~pyy-~~Hk-----i~ 252 (602)
+.-.+|.|+--+|..+ +|+.|++|+.++.|.|..+-+. ++|.- ++.-.+.. .....|.+.- +.+- ++
T Consensus 78 t~iR~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t-~~g~P--~~~~n~~~--~~~~~~~~~~~~la~~gs~~lE 152 (452)
T PF01532_consen 78 TTIRVLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFDT-PTGIP--YPRVNLRT--GGKNRWPGGESSLAEAGSLQLE 152 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSS-SSS-----SEEETTT--CEEETTCCGEEEHHHHCSSHHH
T ss_pred hhhHhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhccC-CCccc--cceeeecc--cCCCCCCCCcccccccccceec
Confidence 4678899988888888 9999999999999999888752 45532 21111100 0011111110 0111 12
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHHHHH-----hhhhhhcc-hh-hhhhhcccccccch----HHHHHHHHHHcC--CH
Q 007471 253 AGLLDQYTYADNAEALRMTTWMVEYFYNR-----VQNVIKKY-SI-ERHWQTLNEEAGGM----NDVLYKLFCITQ--DP 319 (602)
Q Consensus 253 aGLl~~y~~tG~~~aL~ia~r~aD~~~~~-----~~~~~~~~-~~-~~~~~~l~~E~GGm----~~~L~~LY~~TG--d~ 319 (602)
- ..-.++|||++..+.+.+..+.+.+. +..+.+.. .. ...|.......|++ -|-|.+.|-++| |+
T Consensus 153 f--~~LS~lTgd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~YEYLlK~~lL~g~~d~ 230 (452)
T PF01532_consen 153 F--TRLSQLTGDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSFYEYLLKMYLLLGGTDE 230 (452)
T ss_dssp H--HHHHHHHS-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHHHHHHHHHHHHTTTTTH
T ss_pred h--hHHHHHhhccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcCcccccccccCCCcchHHHhhhhhhhhcCccch
Confidence 1 13477899999999999999998872 11221110 00 01111111223433 378999999999 88
Q ss_pred HHHHHHhhccc---cc-ccchhhhc----------C--CCCCCCCcCCCcchhHH-HHHH-HHHhCCchHHHHHHHHHHH
Q 007471 320 KHLMLAHLFDK---PC-FLGLLALQ----------A--DDISGFHSNTHIPIVIG-SQMR-YEVTGDQLHKTISMFFMDI 381 (602)
Q Consensus 320 ryLdlA~~f~~---~~-~~~~la~~----------~--d~l~g~hant~iP~~~G-~a~~-Y~~TGD~~y~~aa~~~w~~ 381 (602)
.|+++=+...+ +. .+.+...+ . ....-.+..+|.-++.| ...+ ...-+++.+++.|+...+.
T Consensus 231 ~~~~~~~~a~~~i~~~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~~~~~~~~~~~~A~~l~~~ 310 (452)
T PF01532_consen 231 QYRDMYDEAVDAIKKHLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGAKLFNDEGDLELAEELTET 310 (452)
T ss_dssp HHHHHHHHHHHHHHHHTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhhcccCchhHHHHHHHHHHH
Confidence 88876443211 11 11111000 0 00011123346655554 3333 3444778888887766665
Q ss_pred h-hccCeeeccCCCCCCCCCCCC-c---------ccCCCCcccccccchhHHHHHHHHHHccCCcchhHHHHHHHHhhhh
Q 007471 382 V-NSSHTYATGGTSVGEFWSDPK-R---------LASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGV 450 (602)
Q Consensus 382 v-~~~~~y~TGG~g~~E~f~~~~-~---------L~~~l~~~~~ETCat~~~l~l~~~L~~~tgd~~YaD~~Er~lyN~i 450 (602)
- .-.+.++||... |.|.-.. . -...+........---+.+.+.-+|+++|||++|.|+-..+ |+++
T Consensus 311 C~~~y~~~~tGl~P--E~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~LRPE~iES~fylyR~TgD~~yre~gw~i-f~ai 387 (452)
T PF01532_consen 311 CYWLYKSTPTGLGP--EIFSFDPCEENCQWDEERKDFMIKISDPRYLLRPETIESLFYLYRATGDPKYREWGWDI-FQAI 387 (452)
T ss_dssp HHHHHHTSSSSS----SEEEESCSCG--TEETGGCSCCHHGGG--B-S--HHHHHHHHHHHHH-BHHHHHHHHHH-HHHH
T ss_pred HHHHHHhcccCCCc--eEEEeeccccccccchhhcccccccccccccchhhhhhheeEEEEEcCCchHHHHHHHH-HHHH
Confidence 3 333455666543 2221110 0 00000001122233347788889999999999999988765 4454
Q ss_pred cc
Q 007471 451 LG 452 (602)
Q Consensus 451 la 452 (602)
-.
T Consensus 388 ~k 389 (452)
T PF01532_consen 388 EK 389 (452)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 31
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=95.01 E-value=0.2 Score=54.06 Aligned_cols=142 Identities=11% Similarity=0.020 Sum_probs=98.1
Q ss_pred chhhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhhcCCcceecCCCchhhhhhccCCcccccchHHHHHHHHH--HH
Q 007471 181 FVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLL--DQ 258 (602)
Q Consensus 181 ~~g~wLsa~a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~~~~~~~~~~~~~~W~pyy~~Hki~aGLl--~~ 258 (602)
-.-|-+||+-..|..+++...+++++++++.+...+-..++|-+.-++...|+-....+..+ .--||-++-+-+ +.
T Consensus 175 p~MHl~EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~dW~p~~~frg~~--~ePGH~fEW~~Lll~~ 252 (388)
T COG2942 175 PHMHLLEAMLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHDWNPAHGFRGRG--IEPGHQFEWAWLLLDI 252 (388)
T ss_pred cchHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhccccCCcCCCcccCC--CCCchHHHHHHHHHHH
Confidence 47899999999999999999999999999999999987788888777654432111111111 224788876643 77
Q ss_pred HHHcCCHhHHHHHHHHHHHHHHHh-----hhhhhcch--------hhhhhhcccccccchHHHHHHHHHHcC-CHHHHHH
Q 007471 259 YTYADNAEALRMTTWMVEYFYNRV-----QNVIKKYS--------IERHWQTLNEEAGGMNDVLYKLFCITQ-DPKHLML 324 (602)
Q Consensus 259 y~~tG~~~aL~ia~r~aD~~~~~~-----~~~~~~~~--------~~~~~~~l~~E~GGm~~~L~~LY~~TG-d~ryLdl 324 (602)
.+..|+.+++..|+++.+-..+.- +..+-.+. ..+.|. ..|. ..+++-|+..|| +++|.+.
T Consensus 253 a~~~~~~~l~~~A~~lf~~a~~~g~d~~~gg~~~sl~~D~~~~d~~~r~Wp--Q~E~---l~AA~ala~~~~~~~~y~~~ 327 (388)
T COG2942 253 ARRRGRAWLIEAARRLFDIAVADGWDPERGGAYYSLDDDGSPHDRQQRLWP--QTEA---LKAAVALAETTGARERYWQW 327 (388)
T ss_pred HHHhchhHHHHHHHHHHHHHHHhccCcccCeEEEEecCCCCcCCHHHhhCh--HHHH---HHHHHHHHhcCCchHHHHHH
Confidence 778899999999999988766531 10000000 011221 1232 257788999999 9999999
Q ss_pred Hhhcc
Q 007471 325 AHLFD 329 (602)
Q Consensus 325 A~~f~ 329 (602)
..++.
T Consensus 328 ~~R~~ 332 (388)
T COG2942 328 YARAW 332 (388)
T ss_pred HHHHH
Confidence 88763
No 32
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=94.98 E-value=1.2 Score=50.58 Aligned_cols=261 Identities=13% Similarity=0.060 Sum_probs=130.4
Q ss_pred chhhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhhcCCcceecCCCchhhhhhccCCccc-c------cchHHHHHH
Q 007471 181 FVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWA-P------YYTIHKILA 253 (602)
Q Consensus 181 ~~g~wLsa~a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~~~~~~~~~~~~~~W~-p------yy~~Hki~a 253 (602)
+.-.+|.|+--+|..++|+.|++|+.++.+.|..+=+. +.|-- ++.-.+..-......|+ + .-++.+ +-
T Consensus 156 ttIR~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdT-ptgiP--~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~L-EF 231 (522)
T PTZ00470 156 TTIRVLGGLLSAYDLTGDEMYLEKAREIADRLLPAFNE-DTGFP--ASEINLATGRKSYPGWAGGCSILSEVGTLQL-EF 231 (522)
T ss_pred eehhhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcC-CCCCC--cceeecccCCCCCcccCCCccchhhhhhHHH-HH
Confidence 36789999988899999999999999999999977542 33421 11100000001112221 0 111211 21
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHHHHHhhh---hhhcc-h-hhhhhhcccccccch----HHHHHHHHHHcC--CHHHH
Q 007471 254 GLLDQYTYADNAEALRMTTWMVEYFYNRVQN---VIKKY-S-IERHWQTLNEEAGGM----NDVLYKLFCITQ--DPKHL 322 (602)
Q Consensus 254 GLl~~y~~tG~~~aL~ia~r~aD~~~~~~~~---~~~~~-~-~~~~~~~l~~E~GGm----~~~L~~LY~~TG--d~ryL 322 (602)
....++|||++..+.+.|..+.+.+.-.. +.+.. . ....|....-.+|++ -|-|.+.|-++| |++|+
T Consensus 232 --~~LS~lTGd~kY~~~a~~i~~~l~~~~~~~~GL~p~~i~~~~g~~~~~~~siGa~~DS~YEYLlK~~il~~~~d~~~~ 309 (522)
T PTZ00470 232 --NYLSEITGDPKYAEYVDKVMDALFSMKPAINGLYPIFLNPDAGRFCGNHISLGALGDSYYEYLLKQWLYTNGREERYR 309 (522)
T ss_pred --HHHHHhhCCHHHHHHHHHHHHHHHhcCCCCCCccceEECCccCccCCCceeecCCcchhHHHHHHHHHhcCCCcHHHH
Confidence 13477899999999999999988764221 11100 0 001122111223433 377889999995 77787
Q ss_pred HHHhhccc---ccccc-h---h--hhcCCCCCCCCcCCCcchhHH-HHHHHH-------HhCCchHHHHHHHHHHHhh-c
Q 007471 323 MLAHLFDK---PCFLG-L---L--ALQADDISGFHSNTHIPIVIG-SQMRYE-------VTGDQLHKTISMFFMDIVN-S 384 (602)
Q Consensus 323 dlA~~f~~---~~~~~-~---l--a~~~d~l~g~hant~iP~~~G-~a~~Y~-------~TGD~~y~~aa~~~w~~v~-~ 384 (602)
++-+...+ ..++. . . ....+.-.-.|..+|+-++.| ...+.- ...+++|++.++...+... .
T Consensus 310 ~~~~~a~~~i~~~l~~~s~~~~~~v~~~~~~~~~~~~~hL~cF~gG~~aLg~~~~~~~~~~~~~~~~~~a~~l~~tC~~~ 389 (522)
T PTZ00470 310 RLFVESAKGIIEHLYKRSPKGLTYIAEMDGGSLTNKMEHLACFAGGMFALGAAINITPDDEKSARYMEVGEEVTKTCYET 389 (522)
T ss_pred HHHHHHHHHHHHHhcccCCCCcEEEeeccCCcCcchhhhhhhhccchhhhcccccccccccccHHHHHHHHHHHHHHHHH
Confidence 75433211 00000 0 0 000000001133345544433 222221 1124567777665554422 2
Q ss_pred cCeeeccCCCCCCCCCCC---CcccCC-CCcccccccchhHHHHHHHHHHccCCcchhHHHHHHHHhhhhccc
Q 007471 385 SHTYATGGTSVGEFWSDP---KRLASN-LDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGI 453 (602)
Q Consensus 385 ~~~y~TGG~g~~E~f~~~---~~L~~~-l~~~~~ETCat~~~l~l~~~L~~~tgd~~YaD~~Er~lyN~ila~ 453 (602)
++...||-.. |.|.-. .++.-. .+..| =---+.+.+.-.|+|+|||++|.|+..+ +|.+|-..
T Consensus 390 Y~~~~tGl~P--E~~~~~~~~~~~~~~~~d~~Y---~LRPE~iES~fylyR~TgD~~yre~gW~-~f~ai~k~ 456 (522)
T PTZ00470 390 YATSPTGLGP--EIFHFDPNSGDISPNVHDSHY---ILRPETVESIFILYRLTGDPKYREWAWK-IFQAIEKH 456 (522)
T ss_pred HHhcccCCCC--ceEEeccCccccccccCCCCC---CCChhHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHH
Confidence 3344555432 333210 001000 01111 0113456677788999999999999876 44555443
No 33
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=94.37 E-value=0.5 Score=50.44 Aligned_cols=125 Identities=18% Similarity=0.105 Sum_probs=79.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHhhhhcCCcceecCCCchhhhhhccCCcccccchHH-HHHHHHHHHHHHcCCHhH
Q 007471 189 SALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIH-KILAGLLDQYTYADNAEA 267 (602)
Q Consensus 189 ~a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~~~~~~~~~~~~~~W~pyy~~H-ki~aGLl~~y~~tG~~~a 267 (602)
+..++..++|+++++.+...++.+.+.+. ++|.. |.....+-...... ||.|- =|...++.+++.+++++.
T Consensus 174 L~~~~~~~~~~~~~~~i~~~i~~~~~~~~--~~g~w---~~~~~~~~~~~~~~---wChG~~Gi~~~l~~~~~~~~~~~~ 245 (343)
T cd04794 174 LLQTPLFLLKPSLAPLIKRSLDYLLSLQF--PSGNF---PSSLGNRKRDRLVQ---WCHGAPGIVYLLAKAYLVFKEEQY 245 (343)
T ss_pred HHhhhhhcCCccHHHHHHHHHHHHHHhhc--cCCCC---CCccCCCCCCcccc---ccCCCchHHHHHHHHHHHhCCHHH
Confidence 33445567899999999999999998877 66753 22110000000011 33221 144556688999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcchhhhhhhcc-cccccchHHHHHHHHHHcCCHHHHHHHhhccc
Q 007471 268 LRMTTWMVEYFYNRVQNVIKKYSIERHWQTL-NEEAGGMNDVLYKLFCITQDPKHLMLAHLFDK 330 (602)
Q Consensus 268 L~ia~r~aD~~~~~~~~~~~~~~~~~~~~~l-~~E~GGm~~~L~~LY~~TGd~ryLdlA~~f~~ 330 (602)
++.+.+.++.+.++ .. . .....+ |.. .|+-++|.++|+.|+|++|++.|..+..
T Consensus 246 ~~~~~~~~~~~~~~--g~----~--~~~~~lCHG~-~G~~~~lL~~~~~~~~~~~~~~a~~~~~ 300 (343)
T cd04794 246 LEAAIKCGELIWKR--GL----L--KKGPGLCHGI-AGNAYAFLLLYRLTGDLKYLYRACKFAE 300 (343)
T ss_pred HHHHHHHHHHHHHh--CC----c--cCCCccccCc-cchHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 99999988866432 11 0 000011 222 2577899999999999999999988754
No 34
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=93.88 E-value=2.4 Score=46.92 Aligned_cols=129 Identities=15% Similarity=0.068 Sum_probs=69.2
Q ss_pred ChHHHHHHHHHHHHHHHhhhhcCCcceecCCC------chhhhhhc---cCCc--c---cccc-hHHHHHHHHHHHHHHc
Q 007471 198 NESLKEKMSAVVSALSACQKEIGSGYLSAFPT------EQFDRLEA---LIPV--W---APYY-TIHKILAGLLDQYTYA 262 (602)
Q Consensus 198 D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~~------~~~~~~~~---~~~~--W---~pyy-~~Hki~aGLl~~y~~t 262 (602)
-+.+++.++.-+|.|.++|. ++|.+-.... ..|.+.+. .+.. + .|-- ..-.+-|+|..++++-
T Consensus 93 ~~dllde~kwg~D~llkm~~--~~~~~~~qvgdg~~~h~~w~~~~~~~~~~~~~~~~~~~~~t~~~~~~AAalA~As~v~ 170 (444)
T PF00759_consen 93 IPDLLDEAKWGLDWLLKMQD--SDGTFYAQVGDGGVDHKVWGRPEIMPDDDPSYRYDAPNPGTDATAEFAAALAAASRVF 170 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTBS--CTTEEEEEESTHHHHHTEESTGGGTGSGESEEEEETTB-EHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccC--CCCceeeeccCccchhhcccCCCCCCCCCCcceEecCCCchHHHHHHHHHHHHHHHhc
Confidence 37899999999999999999 6554422110 11222111 1110 0 0100 0112335555556654
Q ss_pred CC------HhHHHHHHHHHHHHHHHhhhhhhcchhhhhhhccccccc---chHHHHHHHHHHcCCHHHHHHHhhccc
Q 007471 263 DN------AEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAG---GMNDVLYKLFCITQDPKHLMLAHLFDK 330 (602)
Q Consensus 263 G~------~~aL~ia~r~aD~~~~~~~~~~~~~~~~~~~~~l~~E~G---Gm~~~L~~LY~~TGd~ryLdlA~~f~~ 330 (602)
.+ ++.|+.|+++-+|..+..+....... ......-++.+ -+..+-++||+.|||++|++.|+.+..
T Consensus 171 k~~d~~~A~~~L~~A~~~~~~a~~~~~~~~~~~~--~~~~~~Y~~~~~~De~~wAA~~Ly~aTg~~~Y~~~a~~~~~ 245 (444)
T PF00759_consen 171 KDFDPAYAAQCLKAAKEAYAFAKKNPGVYSDNPQ--PNGGGFYNSSGYEDELAWAAAELYRATGDESYLDYAKEYYD 245 (444)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHSTTHGGGTST--CTTTTTSHCS-SHHHHHHHHHHHHHHHT-HHHHHHHHHHCC
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCcc--cccCCcccCCCcccHHHHHHHHHHHhcCcHHHHHHHHHhHH
Confidence 44 47889999998888765432111000 00000000101 123567899999999999999998764
No 35
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=93.81 E-value=0.25 Score=55.18 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhhcCCcceecCC
Q 007471 183 GHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFP 228 (602)
Q Consensus 183 g~wLsa~a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~ 228 (602)
|-.+=-.+.+-+.|+|+.+++-+.+.++.+-+... +-|-+|..-
T Consensus 199 gslllEFg~LSrLTGD~~fE~vA~~A~~~lW~~RS--~igLlGn~i 242 (622)
T KOG2429|consen 199 GSLLLEFGTLSRLTGDPKFEKVARRALDALWSLRS--GIGLLGNHI 242 (622)
T ss_pred cceeeehhhhHHhhCCcHHHHHHHHHHHHHHhhcC--CCCccccee
Confidence 33333334556789999999999999999999888 777777653
No 36
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=93.75 E-value=1.4 Score=48.90 Aligned_cols=255 Identities=14% Similarity=0.131 Sum_probs=128.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhhcCCcc--eecC------------CCc------------------
Q 007471 183 GHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGY--LSAF------------PTE------------------ 230 (602)
Q Consensus 183 g~wLsa~a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~dGY--L~~~------------~~~------------------ 230 (602)
=.||..++-+-..|+|+++++++.++++...+++.. +.|- -|.+ |++
T Consensus 72 QN~lR~L~~LS~lTgd~~Y~q~A~~~~~yfldh~~D-~~GL~~WGGHrFi~L~tl~~eGP~~K~~VHELKhh~PyY~lm~ 150 (557)
T PF06917_consen 72 QNFLRTLVGLSNLTGDPKYQQRAQEIIRYFLDHFVD-DSGLFYWGGHRFINLDTLQIEGPENKNMVHELKHHYPYYELMY 150 (557)
T ss_dssp HHHHHHHHHHHHHH--THHHHHHHHHHHHHHHHSB--TTS-BS-STT-EEETTT--EE-SSTT--SB--SS----HHHHH
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhccC-CCcceeecCceeEecccCCccCcchhhhHHHHhhcCcHHHHHH
Confidence 468888888889999999999999999999999542 3342 2221 000
Q ss_pred -------------h-------hhhhhc---------cCCcccccch-----------------HHHHHHHHHHHHHHcCC
Q 007471 231 -------------Q-------FDRLEA---------LIPVWAPYYT-----------------IHKILAGLLDQYTYADN 264 (602)
Q Consensus 231 -------------~-------~~~~~~---------~~~~W~pyy~-----------------~Hki~aGLl~~y~~tG~ 264 (602)
+ |+++.- ...+|.+-+. -.+|.+|- -+|+++|+
T Consensus 151 ~vdp~aT~rfi~afWnAHV~DW~~Ld~~RHG~Y~~~~~~vd~~~~p~lppf~~tkGLTFvNaG~DLiYaA~-~l~~~~gd 229 (557)
T PF06917_consen 151 EVDPEATRRFIKAFWNAHVEDWQSLDMSRHGDYGKPHDVVDPSKWPGLPPFFETKGLTFVNAGNDLIYAAS-MLAKYDGD 229 (557)
T ss_dssp HH-HHHHHHHHHHHHHHHEEETTTTEE-S-B-TT----SGGGS------TTEEESS---HHHHHHHHHHHH-HHHHHH--
T ss_pred hcCHHHHHHHHHHHHHHHhhhhhhccccccCccCCCCCCcChhhccCCCcchhccCceeeecCcHHHHHHH-HHHhccCc
Confidence 0 111100 0013332111 23566554 48999999
Q ss_pred HhHHHHHHHHHH-HHHHHhhhh-hhc------------------ch--hhhhhhcccccccchH----------------
Q 007471 265 AEALRMTTWMVE-YFYNRVQNV-IKK------------------YS--IERHWQTLNEEAGGMN---------------- 306 (602)
Q Consensus 265 ~~aL~ia~r~aD-~~~~~~~~~-~~~------------------~~--~~~~~~~l~~E~GGm~---------------- 306 (602)
+.++.=+++++. |+..|-.+. ++. .+ +++.++-+.+|+|-|.
T Consensus 230 ~~a~~Wak~L~~QYVlaR~PeTG~~vYQFssp~kr~~p~dd~~T~S~~GDRAqRQFGPEfG~iA~EanvLFk~d~~~i~~ 309 (557)
T PF06917_consen 230 EGALAWAKHLYRQYVLARHPETGLPVYQFSSPLKREPPADDNDTQSWYGDRAQRQFGPEFGDIAREANVLFKGDPRPIVQ 309 (557)
T ss_dssp HHHHHHHHHHHHHTTTTS-TTT----S-SEEE---S--S-TT---GGG--HHHHHHHHHH-TT--GGGEE-TTHHHHHHT
T ss_pred hHHHHHHHHHHHHhhhccCCCCCCceeeecCccccCCCccccccccchhhHHHhhhccccchhHhhhhheeccCCCceee
Confidence 999988887774 444332100 000 00 1222233456665321
Q ss_pred ---HHHHHHHHH--cCCHHHHHHHhh----c-----cc-ccccchh-hhcCCCC------CCCCcCC-----Ccch----
Q 007471 307 ---DVLYKLFCI--TQDPKHLMLAHL----F-----DK-PCFLGLL-ALQADDI------SGFHSNT-----HIPI---- 355 (602)
Q Consensus 307 ---~~L~~LY~~--TGd~ryLdlA~~----f-----~~-~~~~~~l-a~~~d~l------~g~hant-----~iP~---- 355 (602)
+++..|.+. +.++..|+.+-- | +. ..=+.|+ +.|.|-- .|-|-.. -.|.
T Consensus 310 dn~La~l~l~~~lG~~~~~~l~W~i~gL~a~~~yAYd~~~N~~~PM~~dG~dltgy~l~RdGYYG~KGtvl~~~p~~~~y 389 (557)
T PF06917_consen 310 DNPLAQLELARQLGQDDKEMLTWAIDGLKAYYRYAYDEENNEIRPMWNDGQDLTGYRLPRDGYYGKKGTVLKPFPADPDY 389 (557)
T ss_dssp HHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHHHEETTTTEE--EETTSEB-TTEE-SS-BTTB-TT-EE--EE--HHH
T ss_pred cCHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhccCCCceeecccCCcCCcCcccccccccCCCCCeeccccCchhH
Confidence 467788888 667888877631 2 11 1111221 2222210 1112111 1122
Q ss_pred hHHHHHHHHHhCCchHHHHHHHHHHHhhccCeeeccCCCCCCCCCCCCcccCCCCcccccccchhHHHHHHHHHHccCCc
Q 007471 356 VIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKE 435 (602)
Q Consensus 356 ~~G~a~~Y~~TGD~~y~~aa~~~w~~v~~~~~y~TGG~g~~E~f~~~~~L~~~l~~~~~ETCat~~~l~l~~~L~~~tgd 435 (602)
+.-.++.|++++|+.+.+.+...++..- -|-+| ..+..-+ ......+|++.-+++..-.|++.|++
T Consensus 390 ll~~vra~~~s~D~~Lw~~~~~m~~~~g------LGdig-----~~~~~~~---~~~~~~~~~sp~~L~allEL~~atq~ 455 (557)
T PF06917_consen 390 LLPYVRAYRLSRDPELWDLARTMAHHFG------LGDIG-----NAAGKEP---RVNMQTDNASPYLLFALLELYQATQD 455 (557)
T ss_dssp HHHHHHHHHHS--HHHHHHHHHHHHHTT-------EE-T-----TBTTBS----EE-TT-----HHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhcC------ccccc-----Ccccccc---ccccCCCCCCHHHHHHHHHHHHHhCC
Confidence 2345788999999999888887776421 02111 1111101 13567899999999999999999999
Q ss_pred chhHHHHHHHHhhhhccc
Q 007471 436 IAYADYYERSLTNGVLGI 453 (602)
Q Consensus 436 ~~YaD~~Er~lyN~ila~ 453 (602)
++|+++.|++.=|=+-..
T Consensus 456 ~~~l~lA~~~g~~l~~~~ 473 (557)
T PF06917_consen 456 ARYLELADQVGENLFEQH 473 (557)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999987765444
No 37
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=93.35 E-value=2.5 Score=45.78 Aligned_cols=198 Identities=12% Similarity=-0.029 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHH-h-cCChHHHHHHHHHHHHHHHhhhhcCCcceecCCCchhhhhhccCCcccccch--HHH---HHHHH
Q 007471 183 GHYLSASALMWA-S-THNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYT--IHK---ILAGL 255 (602)
Q Consensus 183 g~wLsa~a~~~a-~-t~D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~~~~~~~~~~~~~~W~pyy~--~Hk---i~aGL 255 (602)
=|=++|+...+- . ..+++....+..+++.+.+.+.....+|................. .. .+. .|= |...|
T Consensus 104 i~G~aGi~~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~G~aHG~aGi~~~L 181 (382)
T cd04793 104 ISGLSGIGRYLLLRHEPDSELLREILDYLVYLTEPLNQDITLYIWSENQPSETESKEFPE-GH-INLGLAHGIAGPLALL 181 (382)
T ss_pred eechHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhcCCCCccCcCcCCCccccccCCC-cc-ccccchhcchHHHHHH
Confidence 344555553332 2 257777778888888887765422233332211100000000000 00 011 132 34555
Q ss_pred HHHHHHc-CCHhHHHHHHHHHHHHHHHhhhhhh-cchhhhh-----h-----hc--ccc--ccc--chHHHHHHHHHHcC
Q 007471 256 LDQYTYA-DNAEALRMTTWMVEYFYNRVQNVIK-KYSIERH-----W-----QT--LNE--EAG--GMNDVLYKLFCITQ 317 (602)
Q Consensus 256 l~~y~~t-G~~~aL~ia~r~aD~~~~~~~~~~~-~~~~~~~-----~-----~~--l~~--E~G--Gm~~~L~~LY~~TG 317 (602)
...|+.+ ++++.++++.+..+|+.+.+..... .+...+. . .. ... -+| |+..++..+++.++
T Consensus 182 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~ 261 (382)
T cd04793 182 ALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCYGTPGIARALQLAGKALD 261 (382)
T ss_pred HHHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCCCcHHHHHHHHHHHHHhC
Confidence 5667777 8899999999998887765432100 0000000 0 00 000 023 78899999999999
Q ss_pred CHHHHHHHhhcccccccchhhhc-CCCCCCCCcCCCcchhHHHHHHHHHhCCchHHHHHHHHHHHhhc
Q 007471 318 DPKHLMLAHLFDKPCFLGLLALQ-ADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNS 384 (602)
Q Consensus 318 d~ryLdlA~~f~~~~~~~~la~~-~d~l~g~hant~iP~~~G~a~~Y~~TGD~~y~~aa~~~w~~v~~ 384 (602)
|+++++.|....+...-...... .....-.|-... +.......|+.|+|++++++++++.+.+..
T Consensus 262 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lChG~~G--~~~~l~~~~~~~~~~~~~~~a~~~~~~~l~ 327 (382)
T cd04793 262 DQKLQEAAEKILKAALKDKKQLSKLISPTLCHGLAG--LLFIFYLLYKDTNTNEFKSALEYLLNQIIS 327 (382)
T ss_pred CHHHHHHHHHHHHHHHhChhhhccCCCCCcCccHHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 99999998876543210000000 001111221000 012346678999999999999998888774
No 38
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=91.03 E-value=1.1 Score=47.28 Aligned_cols=129 Identities=21% Similarity=0.182 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHhhhhcCCcc-eecCCCchhhhhhccCCcc-cccchHHHHHHHHHH
Q 007471 184 HYLSASALMWAST----HNESLKEKMSAVVSALSACQKEIGSGY-LSAFPTEQFDRLEALIPVW-APYYTIHKILAGLLD 257 (602)
Q Consensus 184 ~wLsa~a~~~a~t----~D~~L~~k~~~~Vd~l~~~Q~~~~dGY-L~~~~~~~~~~~~~~~~~W-~pyy~~Hki~aGLl~ 257 (602)
|=|-|.-+++... .++++.+-++.-|+.+.+.|- ++|- ..+. ....+++. +..| +|= +.--|..
T Consensus 222 hGLagI~~vLm~~~L~~d~~~~~~dVK~sldym~~~rf--psGNyP~s~-~~~~drLV--hWcHGApG-----v~~~L~k 291 (403)
T KOG2787|consen 222 HGLAGILYVLMDPTLKVDQPALLKDVKGSLDYMIQNRF--PSGNYPSSE-GNKRDRLV--HWCHGAPG-----VAYTLAK 291 (403)
T ss_pred hhHHHHHHHHhCCCCCCcchhHHHhhhhHHHHHHHccC--CCCCCCccc-CCCcceee--eeccCCch-----HHHHHHH
Confidence 4444444444322 356788889999999988887 8773 3222 12223321 1122 121 1122457
Q ss_pred HHHHcCCHhHHHHHHHHHHHHHHHhhhhhhcchhhhhhhcccccccchHHHHHHHHHHcCCHHHHHHHhhccc
Q 007471 258 QYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDK 330 (602)
Q Consensus 258 ~y~~tG~~~aL~ia~r~aD~~~~~~~~~~~~~~~~~~~~~l~~E~GGm~~~L~~LY~~TGd~ryLdlA~~f~~ 330 (602)
+|++-+.++.|+.+.+.+|-+.++ .++.+ ...- -|... |-..++.-||+.|||.+||-=|++|-+
T Consensus 292 Ay~VF~Eekyl~aa~ecadvVW~r--GlLkk----g~Gi-chGva-GNaYvFLsLyRLT~d~kYlyRA~kFae 356 (403)
T KOG2787|consen 292 AYQVFKEEKYLEAAMECADVVWKR--GLLKK----GVGI-CHGVA-GNAYVFLSLYRLTGDMKYLYRAKKFAE 356 (403)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHh--hhhhc----CCcc-ccccc-CchhhhHhHHHHcCcHHHHHHHHHHHH
Confidence 899999999999999999988765 11111 0000 01111 234788899999999999999999854
No 39
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=90.96 E-value=1.5 Score=49.06 Aligned_cols=146 Identities=20% Similarity=0.134 Sum_probs=88.8
Q ss_pred hhhHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHhhhhcCCccee--cCCCchhhhhhc-cCCcccccch--HHHHHHHH
Q 007471 182 VGHYLSASALMWASTH-NESLKEKMSAVVSALSACQKEIGSGYLS--AFPTEQFDRLEA-LIPVWAPYYT--IHKILAGL 255 (602)
Q Consensus 182 ~g~wLsa~a~~~a~t~-D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~--~~~~~~~~~~~~-~~~~W~pyy~--~Hki~aGL 255 (602)
-|--++|++.+++.++ ++++.+.+..+++-+.+.-..++.+-|- +.....-.+.+. .+..|+|-+. .-.+..||
T Consensus 507 nGLviSgl~kag~~~~a~~~y~~~a~~~a~fl~k~m~d~~eklliR~scY~ga~g~ve~~n~~~~~~~FldDYAFlI~gL 586 (786)
T KOG2244|consen 507 NGLVISGLAKAGKILKAEPEYTKYAFPVANFLPKDMIDVAEKLLIRGSCYDGASGRVEHSNRPSKAPAFLDDYAFLISGL 586 (786)
T ss_pred cchhhHHHHHHHHHhhcCHHHHHHHHHHHhhhhhhhhchhhhheeecccccCCCcceeccCCccccchhhhhHHHHHHHH
Confidence 3788999999998876 5699999999888887765533322221 111111111221 3456665332 22467899
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHHHHHhhhhhhcch-----hhhhhhcccccccc--------hHHHHHHHHHHcCCHHHH
Q 007471 256 LDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYS-----IERHWQTLNEEAGG--------MNDVLYKLFCITQDPKHL 322 (602)
Q Consensus 256 l~~y~~tG~~~aL~ia~r~aD~~~~~~~~~~~~~~-----~~~~~~~l~~E~GG--------m~~~L~~LY~~TGd~ryL 322 (602)
+|+|+++|+...|+-|+++-|-..+.|=+. .+|- ++.....+.+.+-| -.--|++||.+++.+.||
T Consensus 587 LDlYea~~~~e~LkwA~~LQdtqdklFWdg-ggYF~Se~~~~~v~vRlkeDhDGAEPs~nSVsahNLvrL~~~~~~e~yl 665 (786)
T KOG2244|consen 587 LDLYEAGGGIEWLKWAIKLQDTQDKLFWDG-GGYFISEKTDEDVSVRLKEDHDGAEPSGNSVSAHNLVRLASIVAAESYL 665 (786)
T ss_pred HHHHHccCchHHHHHHHHHHHHHHHheecC-CceeeeeccCCCcceeeccccCCCCCCccchhhhhHHHHHHHhhHHHHH
Confidence 999999999999999999988655533210 0110 00000001111111 124689999999999999
Q ss_pred HHHhhc
Q 007471 323 MLAHLF 328 (602)
Q Consensus 323 dlA~~f 328 (602)
+-|.+.
T Consensus 666 ~ka~~l 671 (786)
T KOG2244|consen 666 NKAHRL 671 (786)
T ss_pred HHHHHH
Confidence 999875
No 40
>PLN02266 endoglucanase
Probab=90.48 E-value=5.1 Score=45.38 Aligned_cols=124 Identities=11% Similarity=0.010 Sum_probs=66.7
Q ss_pred ChHHHHHHHHHHHHHHHhhhhcCCcceecCC-C-----chhhhhhccCCcccccch----------HHHHHHHHHHHHHH
Q 007471 198 NESLKEKMSAVVSALSACQKEIGSGYLSAFP-T-----EQFDRLEALIPVWAPYYT----------IHKILAGLLDQYTY 261 (602)
Q Consensus 198 D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~-~-----~~~~~~~~~~~~W~pyy~----------~Hki~aGLl~~y~~ 261 (602)
-+.+++.++.-+|.|.++|. .+|-+-.-- + ..|.+-+..... -|.|. .-.+-|+|.+++++
T Consensus 129 ~pd~Ldelkw~~D~llk~~~--~~~~vy~qVg~~~~Dh~~W~~Pe~~~~~-R~~y~i~~~~pgsd~a~e~AAALAaas~v 205 (510)
T PLN02266 129 LQNAKDAIRWATDYLLKATA--HPDTIYVQVGDANKDHACWERPEDMDTP-RSVFKVDKNTPGSDVAAETAAALAAASLV 205 (510)
T ss_pred cHHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCCCcccCCChhhcCCC-CeeEEeCCCCCchHHHHHHHHHHHHHHHH
Confidence 57889999999999999997 554332110 0 011111110000 01111 11234666556665
Q ss_pred cCC------HhHHHHHHHHHHHHHHHhhhhhhcchhh--hhhhcccccccc----hHHHHHHHHHHcCCHHHHHHHhhc
Q 007471 262 ADN------AEALRMTTWMVEYFYNRVQNVIKKYSIE--RHWQTLNEEAGG----MNDVLYKLFCITQDPKHLMLAHLF 328 (602)
Q Consensus 262 tG~------~~aL~ia~r~aD~~~~~~~~~~~~~~~~--~~~~~l~~E~GG----m~~~L~~LY~~TGd~ryLdlA~~f 328 (602)
-.+ ++.|+.|+++-+|..+.-+. +... ....+.-...+| +..+-+|||+.|||++|++.++..
T Consensus 206 fk~~D~~yA~~~L~~Ak~ly~fa~~~~g~----y~~~~~~~~~~~y~s~s~~~DEl~WAAawLy~ATGd~~Yl~~~~~~ 280 (510)
T PLN02266 206 FRKSDPTYSKLLVRRAIRVFQFADKYRGA----YSNGLKPDVCPFYCSYSGYQDELLWGAAWLHKATKNPTYLNYIQVN 280 (510)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHhCCCC----ccCCCCcccCCCcccCCcchHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 443 36888888888887754221 1100 000011111122 234668999999999999987654
No 41
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=89.63 E-value=18 Score=40.95 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=38.2
Q ss_pred hhhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhhcCCcceecC
Q 007471 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAF 227 (602)
Q Consensus 182 ~g~wLsa~a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~ 227 (602)
-|+.+-+++..+..|+|+-+..-++.|.+++.+--.+...|+.++.
T Consensus 338 Q~QL~~aysdafklT~de~y~~va~~I~qYl~rdlsh~~GGfysaE 383 (786)
T KOG2244|consen 338 QGQLANAYSDAFKLTKDEMYSYVARDILQYLRRDLSHPEGGFYSAE 383 (786)
T ss_pred HHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHhccCCCCCccccc
Confidence 4677888899999999999999999999999986665566777665
No 42
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=88.03 E-value=6.8 Score=42.38 Aligned_cols=143 Identities=13% Similarity=0.065 Sum_probs=83.0
Q ss_pred cchhhHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHhhhhcCCc-cee-cCCCc-hhhhh-hc---cCCcccccchHH-H
Q 007471 180 HFVGHYLSASALMWAST-HNESLKEKMSAVVSALSACQKEIGSG-YLS-AFPTE-QFDRL-EA---LIPVWAPYYTIH-K 250 (602)
Q Consensus 180 h~~g~wLsa~a~~~a~t-~D~~L~~k~~~~Vd~l~~~Q~~~~dG-YL~-~~~~~-~~~~~-~~---~~~~W~pyy~~H-k 250 (602)
|-+.=.+.+++.++..+ .++..++.+.+.++.+.+.+.....| |.. .++.. ....- .. .... ||.|- =
T Consensus 172 HG~aGi~~~L~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~---wChG~~G 248 (382)
T cd04793 172 HGIAGPLALLALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDA---WCYGTPG 248 (382)
T ss_pred hcchHHHHHHHHHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCC---CCCCcHH
Confidence 33333455566666667 89999999999999888877533332 111 11100 00000 00 1122 34332 1
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhhhcchhhhhhhcccccccchHHHHHHHHHHcCCHHHHHHHhhccc
Q 007471 251 ILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDK 330 (602)
Q Consensus 251 i~aGLl~~y~~tG~~~aL~ia~r~aD~~~~~~~~~~~~~~~~~~~~~l~~E~GGm~~~L~~LY~~TGd~ryLdlA~~f~~ 330 (602)
|..+++..++.+++++.++.+.+...-+.++.... . +.....+.--.-|+-..|.++|+.|+|+++++.|+++.+
T Consensus 249 i~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~-~~~~~~lChG~~G~~~~l~~~~~~~~~~~~~~~a~~~~~ 323 (382)
T cd04793 249 IARALQLAGKALDDQKLQEAAEKILKAALKDKKQL----S-KLISPTLCHGLAGLLFIFYLLYKDTNTNEFKSALEYLLN 323 (382)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhChhhh----c-cCCCCCcCccHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 45566678889999999999888877655432110 0 000001111112677899999999999999999987643
No 43
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=87.15 E-value=8.2 Score=40.92 Aligned_cols=108 Identities=21% Similarity=0.262 Sum_probs=66.6
Q ss_pred HhHHHHHHHHHHHHHHH-hhhhhhcch------hhh--hhhccccccc--chHHHHHHHHHHcCCHHHHHHHhhcccccc
Q 007471 265 AEALRMTTWMVEYFYNR-VQNVIKKYS------IER--HWQTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDKPCF 333 (602)
Q Consensus 265 ~~aL~ia~r~aD~~~~~-~~~~~~~~~------~~~--~~~~l~~E~G--Gm~~~L~~LY~~TGd~ryLdlA~~f~~~~~ 333 (602)
+..++.+++-.||+.+. |.. ++++ .++ ||- +| |+...|.+.|++-++++||+.|..--+--+
T Consensus 241 ~~~~~dVK~sldym~~~rfps--GNyP~s~~~~~drLVhWc-----HGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW 313 (403)
T KOG2787|consen 241 PALLKDVKGSLDYMIQNRFPS--GNYPSSEGNKRDRLVHWC-----HGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVW 313 (403)
T ss_pred hhHHHhhhhHHHHHHHccCCC--CCCCcccCCCcceeeeec-----cCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45688888999998764 321 1221 011 232 34 789999999999999999998765321000
Q ss_pred -cchhhhcCCCCCCCCcCCCcchhHHHHHHHHHhCCchHHHHHHHHHHHhhc
Q 007471 334 -LGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNS 384 (602)
Q Consensus 334 -~~~la~~~d~l~g~hant~iP~~~G~a~~Y~~TGD~~y~~aa~~~w~~v~~ 384 (602)
.+-+.++...-.|.--|. .-+...|++|||.+|+-.|..|-+.+.+
T Consensus 314 ~rGlLkkg~GichGvaGNa-----YvFLsLyRLT~d~kYlyRA~kFae~lld 360 (403)
T KOG2787|consen 314 KRGLLKKGVGICHGVAGNA-----YVFLSLYRLTGDMKYLYRAKKFAEWLLD 360 (403)
T ss_pred HhhhhhcCCcccccccCch-----hhhHhHHHHcCcHHHHHHHHHHHHHHHh
Confidence 011222211111111121 2256789999999999999999999886
No 44
>PLN02340 endoglucanase
Probab=86.53 E-value=12 Score=43.34 Aligned_cols=170 Identities=11% Similarity=-0.002 Sum_probs=84.4
Q ss_pred hhHHhcCCCCCCC-----CCCCCCCCCcCcc-ccchhhHHHHHHHHHHh--------cCChHHHHHHHHHHHHHHHhhhh
Q 007471 153 NFRKTARLPAPGE-----PYGGWEEPSCELR-GHFVGHYLSASALMWAS--------THNESLKEKMSAVVSALSACQKE 218 (602)
Q Consensus 153 nFr~~AGl~~~g~-----~~ggWe~~d~~lr-Gh~~g~wLsa~a~~~a~--------t~D~~L~~k~~~~Vd~l~~~Q~~ 218 (602)
++|..+++. +|. -.|||.+.+--++ |-..+.=..-+++.+.. .+-+.+++.++.-+|.+.+||.
T Consensus 57 ~WR~ds~l~-Dg~~~~~DlsGGwyDAGD~vKf~~p~a~t~t~L~w~~~ef~~~~~~~~~~~~~ldeirw~~Dyllk~~~- 134 (614)
T PLN02340 57 KWRGDSGLK-DGFLQGVDLVGGYYDAGDHVKFGLPMAFAVTMLSWGAVDFRKEITALNQMQRTLWAIRWGTDYFIKAHT- 134 (614)
T ss_pred cccccccCC-CcccccCCCCCCceeCCCcceecchhHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhcC-
Confidence 366666665 332 3478876542111 11123333333333322 1347899999999999999987
Q ss_pred cCCcceecCC------Cchhhhhhc---cCCccc-----cc-chHHHHHHHHHHHHHHcCC------HhHHHHHHHHHHH
Q 007471 219 IGSGYLSAFP------TEQFDRLEA---LIPVWA-----PY-YTIHKILAGLLDQYTYADN------AEALRMTTWMVEY 277 (602)
Q Consensus 219 ~~dGYL~~~~------~~~~~~~~~---~~~~W~-----py-y~~Hki~aGLl~~y~~tG~------~~aL~ia~r~aD~ 277 (602)
+++-+-.-- ...|.+-++ .|.... |= -+--.+-|+|.+++++-.+ ++.|+.|+++-+|
T Consensus 135 -~~~~~~~qVGdg~~DH~~W~~PE~~~~~R~~y~i~~~~pgSd~a~e~AAAlAaas~vfk~~D~~YA~~lL~~Ak~ly~f 213 (614)
T PLN02340 135 -QPNVLWGQVGDGDSDHYCWERAEDMTTPRTAYKLDQNHPGSDLAGETAAALAAASKAFKPYNSSYSDLLLVHAKQLFSF 213 (614)
T ss_pred -CCCeEEEEeCCCCcccccCCChhhcCCcCceeecCCCCCccHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 443331110 011222111 111100 10 0011234556555555433 3688888888888
Q ss_pred HHHHhhhhhhcchh-hhhhhc--ccccccchHHHHHHHHHHcCCHHHHHHHhhc
Q 007471 278 FYNRVQNVIKKYSI-ERHWQT--LNEEAGGMNDVLYKLFCITQDPKHLMLAHLF 328 (602)
Q Consensus 278 ~~~~~~~~~~~~~~-~~~~~~--l~~E~GGm~~~L~~LY~~TGd~ryLdlA~~f 328 (602)
..+.-+..-..... ...... ...| +.-+-+|||+.|||++||+.++..
T Consensus 214 A~~~~g~y~~s~~~a~~~Y~ss~~~DE---l~WAAawLy~ATgd~~Yl~~~~~~ 264 (614)
T PLN02340 214 ADKFRGLYDDSIQNAKKFYTSSGYSDE---LLWAAAWLYRATGDEYYLKYVVDN 264 (614)
T ss_pred HHhCCCCccCCCCccccCCCCCCcchH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 87643211000000 000000 0111 235668999999999999988765
No 45
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=86.09 E-value=2.4 Score=44.65 Aligned_cols=134 Identities=16% Similarity=0.208 Sum_probs=76.8
Q ss_pred hhhHHHHHHHH----H-HhcCChHHHHHHHHHHHHHHHhhhhcCCcceecCCCchhhhhhccCCcccccchH-HHHHHHH
Q 007471 182 VGHYLSASALM----W-ASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTI-HKILAGL 255 (602)
Q Consensus 182 ~g~wLsa~a~~----~-a~t~D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~~~~~~~~~~~~~~W~pyy~~-Hki~aGL 255 (602)
+.|=++|++.+ + ..+++++.++.+..+++.+.+.+.....+|..........+ +..| |.| --|..++
T Consensus 165 ~aHG~~Gi~~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~W---C~G~~Gi~~~~ 237 (355)
T PF05147_consen 165 FAHGIAGILYALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTDDGGWPDNRNNSNYKS----RPSW---CYGSPGILLAL 237 (355)
T ss_dssp TTTSHHHHHHHHCHCCHHT--HHHHHHCHHHHHHHHHHC--TGCCT--SECTHHHHHC------SS---SSSHHHHHHHH
T ss_pred ccccHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHHhcCcccCCCCCCCCcccccc----cccc---ccCcHHHHHHH
Confidence 44555555544 4 36678999999999999999988644566443322111000 2333 333 1244555
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHHHHHhhhhhhcchhhhhhhcccccccchHHHHHHHHHHcCCHHHHHHHhhccc
Q 007471 256 LDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDK 330 (602)
Q Consensus 256 l~~y~~tG~~~aL~ia~r~aD~~~~~~~~~~~~~~~~~~~~~l~~E~GGm~~~L~~LY~~TGd~ryLdlA~~f~~ 330 (602)
...++..+++...+.+.+.+..+.+.-. . ..-..+..-..|+-..|..+|+.|++++|.+.|+++.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~lCHG~aG~~~~l~~~~~~~~~~~~~~~~~~~~~ 304 (355)
T PF05147_consen 238 LKAYKILDDEEYDEEAEQALESILQKGL-F-------LNNPSLCHGTAGILEILLDLYKYTGDEEYKELANKLIQ 304 (355)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHHHHH-T-C-------TTSS-STTSHHHHHHHHHHHHHHH--HCCHHHHHHHHH
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHccc-c-------CCCCceeCchHHhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5778889999999999888877665210 0 00011211122677899999999999999999988743
No 46
>PLN02175 endoglucanase
Probab=85.92 E-value=7.6 Score=43.76 Aligned_cols=117 Identities=13% Similarity=-0.040 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHcCC------HhHHHHHHHHHHHHHHHhhhhhhcchhhh--hhhcccccccch----HHHHHHHHHHcCC
Q 007471 251 ILAGLLDQYTYADN------AEALRMTTWMVEYFYNRVQNVIKKYSIER--HWQTLNEEAGGM----NDVLYKLFCITQD 318 (602)
Q Consensus 251 i~aGLl~~y~~tG~------~~aL~ia~r~aD~~~~~~~~~~~~~~~~~--~~~~l~~E~GGm----~~~L~~LY~~TGd 318 (602)
+-|+|.+++++-.+ ++.|+.|+++-+|..+.-+. +.... .....-...+|. .-+-+|||+.|||
T Consensus 174 ~AAALAaaS~vfk~~D~~YA~~lL~~Ak~ly~fA~~~~g~----y~~~~~~~~~~~Y~s~s~y~DEl~WAAawLY~ATgd 249 (484)
T PLN02175 174 TAAALAAASMVFRKVDSKYSRLLLATAKKVMQFAIQYRGA----YSDSLSSSVCPFYCSYSGYKDELMWGASWLLRATND 249 (484)
T ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhCCCC----cccCccccccCccccCCCccHHHHHHHHHHHHHhCC
Confidence 34555555555443 36888898888888764321 11100 000111111222 2466899999999
Q ss_pred HHHHHHHhhcccccccchhhhcCCCCCCCCcCCCcchhHHHHHH-HHH------hCCchHHHHHHHHHHHhhc
Q 007471 319 PKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIGSQMR-YEV------TGDQLHKTISMFFMDIVNS 384 (602)
Q Consensus 319 ~ryLdlA~~f~~~~~~~~la~~~d~l~g~hant~iP~~~G~a~~-Y~~------TGD~~y~~aa~~~w~~v~~ 384 (602)
++||+.++.+.... .. ..+.-+ .+..|..++ +++ ++.+.|++.++.++.....
T Consensus 250 ~~Yl~~~~~~~~~~-------~~----~~~~Wd--~k~~g~~vLla~~~~~~~~~~~~~y~~~~~~~~~~~~~ 309 (484)
T PLN02175 250 PYYANFIKSLGGGD-------QP----DIFSWD--NKYAGAYVLLSRRALLNKDSNFEQYKQAAENFICKILP 309 (484)
T ss_pred HHHHHHHHHcCCCC-------CC----CccCCc--CHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccC
Confidence 99999776642110 00 011111 134555443 332 3345788888888887653
No 47
>PLN02171 endoglucanase
Probab=85.44 E-value=14 Score=43.15 Aligned_cols=169 Identities=11% Similarity=0.032 Sum_probs=83.0
Q ss_pred hhHHhcCCCCCC-----CCCCCCCCCCcCcc-ccchhhHHHHHHHHHHh--------cCChHHHHHHHHHHHHHHHhhhh
Q 007471 153 NFRKTARLPAPG-----EPYGGWEEPSCELR-GHFVGHYLSASALMWAS--------THNESLKEKMSAVVSALSACQKE 218 (602)
Q Consensus 153 nFr~~AGl~~~g-----~~~ggWe~~d~~lr-Gh~~g~wLsa~a~~~a~--------t~D~~L~~k~~~~Vd~l~~~Q~~ 218 (602)
.+|..+++. +| .-.|||.+.+--+. |-..+.=...+++.+.. -.-+.+++.++.-.|.|.++|.
T Consensus 57 ~Wr~~s~~~-Dg~~~~vDlsGGwyDAGD~vKf~~p~a~s~t~L~w~~~e~~~~~~~~g~~~~~Ldeikw~~Dyllk~~~- 134 (629)
T PLN02171 57 TWRANSGLF-DGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSIIEYGKQMAAAGELGHAMDAVKWGTDYFIKAHP- 134 (629)
T ss_pred CCccCCCCC-CCCcCcccCCCCceeCCCCceeccchHHHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHHHHhcc-
Confidence 477777776 33 23478976542111 11122222223322211 1235788889999999999997
Q ss_pred cCCcceecCC-C-----chhhhhhc---cCCccc-----cc-chHHHHHHHHHHHHHHcCC------HhHHHHHHHHHHH
Q 007471 219 IGSGYLSAFP-T-----EQFDRLEA---LIPVWA-----PY-YTIHKILAGLLDQYTYADN------AEALRMTTWMVEY 277 (602)
Q Consensus 219 ~~dGYL~~~~-~-----~~~~~~~~---~~~~W~-----py-y~~Hki~aGLl~~y~~tG~------~~aL~ia~r~aD~ 277 (602)
++|-+-.-- + ..|.+-++ .|.+.. |= -+--.+-|+|.+++++-.+ ++.|+.|+++-+|
T Consensus 135 -~~~~~y~qVgdg~~DH~~W~~Pe~~~~~R~~y~i~~~~pgSd~a~e~AAAlAaaS~vfk~~D~~YA~~lL~~Ak~ly~f 213 (629)
T PLN02171 135 -EPNVLYGEVGDGDTDHYCWQRPEDMTTDRQAYRIDPQNPGSDLAGETAAAMAAASIVFRRSNPGYANELLTHAKQLFDF 213 (629)
T ss_pred -CCCeEEEEeCCCCccccCcCChhHccccceeEEecCCCCchHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHH
Confidence 444221110 0 01111111 111100 00 0112234556555665443 3678888888888
Q ss_pred HHHHhhhhhhcchhhh-hhhcccccccc----hHHHHHHHHHHcCCHHHHHHHhhc
Q 007471 278 FYNRVQNVIKKYSIER-HWQTLNEEAGG----MNDVLYKLFCITQDPKHLMLAHLF 328 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~-~~~~l~~E~GG----m~~~L~~LY~~TGd~ryLdlA~~f 328 (602)
..+.-+. ++... .....-....| +.-+-+|||+.|||++||+.++..
T Consensus 214 A~~~~g~----y~~~~~~~~~~Y~s~s~y~DEl~WAAawLy~ATgd~~Yl~~~~~~ 265 (629)
T PLN02171 214 ADKYRGK----YDSSITVAQKYYRSVSGYGDELLWAAAWLYQATNNQYYLDYLGNN 265 (629)
T ss_pred HHhCCCc----ccCCCcccCCccCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8764221 11000 00000011111 235668999999999999987654
No 48
>PLN02909 Endoglucanase
Probab=85.20 E-value=17 Score=41.08 Aligned_cols=120 Identities=10% Similarity=0.008 Sum_probs=66.7
Q ss_pred ChHHHHHHHHHHHHHHHhhhhcCCcceecC-CC-----chhhhhhccCCcccccch----------HHHHHHHHHHHHHH
Q 007471 198 NESLKEKMSAVVSALSACQKEIGSGYLSAF-PT-----EQFDRLEALIPVWAPYYT----------IHKILAGLLDQYTY 261 (602)
Q Consensus 198 D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~-~~-----~~~~~~~~~~~~W~pyy~----------~Hki~aGLl~~y~~ 261 (602)
-+.+++.++.-+|.|.++|. .+|-+-.- .+ ..|.+-++.... -|.|. --.+-|+|..++++
T Consensus 119 ~~d~ldeikw~~D~llk~~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~~~-R~~~~i~~~~pgtd~a~~~AAAlA~as~v 195 (486)
T PLN02909 119 LENVRAAIRWGTDYFLKAAS--RKNRLYVQVGDPNLDHQCWVRPENMKTP-RTVLEIDEKTPGTEIAAETAAAMAASSMV 195 (486)
T ss_pred hHHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCCCcccCCChhhccCC-ceeEecCCCCCCcHHHHHHHHHHHHHHHh
Confidence 47899999999999999998 55543211 00 011111111000 01111 22334566555665
Q ss_pred cCC------HhHHHHHHHHHHHHHHHhhhhhhcchhhhhhhcccccccc----hHHHHHHHHHHcCCHHHHHHHhh
Q 007471 262 ADN------AEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGG----MNDVLYKLFCITQDPKHLMLAHL 327 (602)
Q Consensus 262 tG~------~~aL~ia~r~aD~~~~~~~~~~~~~~~~~~~~~l~~E~GG----m~~~L~~LY~~TGd~ryLdlA~~ 327 (602)
-.+ ++.|+.|+++-+|..+.-+. ++.. .+.-...+| +..+-+|||+.|||++||+.++.
T Consensus 196 fk~~D~~yA~~lL~~Ak~~y~fA~~~~g~----y~~~---~~~y~s~s~y~DEl~WAAawLy~aTgd~~Yl~~~~~ 264 (486)
T PLN02909 196 FRHVDHKYSRRLLNKAKLLFKFAKAHKGT----YDGE---CPFYCSYSGYNDELLWAATWLYKATKKQMYLKYIKH 264 (486)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHhCCCC----cCCC---CCccccCCCcchHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 443 36788888888888765221 1110 011111121 23566899999999999997664
No 49
>PLN02345 endoglucanase
Probab=84.84 E-value=10 Score=42.64 Aligned_cols=123 Identities=11% Similarity=0.056 Sum_probs=65.6
Q ss_pred ChHHHHHHHHHHHHHHHhhhhcCCcceecC-CC-----chhhhhhccCCcccccch----------HHHHHHHHHHHHHH
Q 007471 198 NESLKEKMSAVVSALSACQKEIGSGYLSAF-PT-----EQFDRLEALIPVWAPYYT----------IHKILAGLLDQYTY 261 (602)
Q Consensus 198 D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~-~~-----~~~~~~~~~~~~W~pyy~----------~Hki~aGLl~~y~~ 261 (602)
-+.+++.++.-+|.|.++|. ++|-+-.- .+ ..|.+-+... .--|.|. --.+-|+|..++.+
T Consensus 81 ~~~~ldelkw~~Dyllk~~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~-~~R~~~~~~~~~pgsd~a~~~AAAlA~as~v 157 (469)
T PLN02345 81 LDSAKDSLKWITDYLINAHP--SENVLYIQVGDPKLDHKCWERPETMD-EKRPLTKINTSSPGSEVAAETAAAMAAASLV 157 (469)
T ss_pred hHHHHHHHhHHHHHHHHhcC--CCCeEEEEecCCCCCcccCCChhhcC-CcceEEecCCCCCCcHHHHHHHHHHHHHHHH
Confidence 36899999999999999998 66543211 00 0111111110 0001111 12244555555555
Q ss_pred cCC------HhHHHHHHHHHHHHHHHhhhhhhcchhhhhhhccccccc---chHHHHHHHHHHcCCHHHHHHHh
Q 007471 262 ADN------AEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAG---GMNDVLYKLFCITQDPKHLMLAH 326 (602)
Q Consensus 262 tG~------~~aL~ia~r~aD~~~~~~~~~~~~~~~~~~~~~l~~E~G---Gm~~~L~~LY~~TGd~ryLdlA~ 326 (602)
-.+ .+.|+.|+++-+|..+.-+......+... ..-++.+ .+..+-+|||+.|||+.||+.++
T Consensus 158 fk~~D~~YA~~lL~~Ak~ly~fa~~~~g~y~~~~~~~~---~~Y~s~~~~DEl~WAAawLy~ATgd~~Yl~~~~ 228 (469)
T PLN02345 158 FKSSDSTYSDTLLKHAKQLFNFADKYRGSYSESIPEVQ---DYYNSTGYGDELLWAASWLYHATGDKTYLAYVT 228 (469)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCCCccC---CCCCCcccccHHHHHHHHHHHHhCCHHHHHHHH
Confidence 443 36888888888887764221100000000 0001111 13456789999999999999874
No 50
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=83.50 E-value=16 Score=43.61 Aligned_cols=222 Identities=17% Similarity=0.174 Sum_probs=117.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHhhhhcCCc-ceecCCCchhhhhhccCCcccccchHHHHHHHHHHHHHHcCCHhHH
Q 007471 190 ALMWASTHNESLKEKMSAVVSALSACQKEIGSG-YLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEAL 268 (602)
Q Consensus 190 a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~dG-YL~~~~~~~~~~~~~~~~~W~pyy~~Hki~aGLl~~y~~tG~~~aL 268 (602)
+++..+|+...+++.+.+++..+.+.-...-.+ =+|++.. . .. +.-||.--+.++++..+.
T Consensus 657 ayL~~vtgk~~Y~~ia~~~L~~~~~sv~~~~~~~~iga~~G-----~---~g----------~~yal~~I~~~~~~~~l~ 718 (963)
T COG4403 657 AYLALVTGKDYYKEIAIKALQDSRKSVNNNLNPINIGAFTG-----L---SG----------YFYALWKIYSVTRDNYLI 718 (963)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHhhhhccCCcccccccc-----c---ch----------hhhhhHHHHHhcccHHHH
Confidence 344557899999999998888777665411111 1111111 0 00 122344567889999888
Q ss_pred HHHHHHHHHHHHHhhhhhhcchhhhhhhcccccccchHHHHHHHHHHcCCHHHHHHHhhcccccccchhhhcCCC----C
Q 007471 269 RMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADD----I 344 (602)
Q Consensus 269 ~ia~r~aD~~~~~~~~~~~~~~~~~~~~~l~~E~GGm~~~L~~LY~~TGd~ryLdlA~~f~~~~~~~~la~~~d~----l 344 (602)
.-+.+.+.++...... + +.....+.- .|..-+|+.+|+.|.+||.|++|.-..+..+ +. ..+.|. +
T Consensus 719 ~~~~~~i~~le~~v~~-----~--~~~d~i~Gl-~g~i~~L~~iYk~~~epk~l~~ais~~~~l~-~~-~v~~d~s~~~l 788 (963)
T COG4403 719 QSAENSIRHLEILVQK-----S--KDPDFINGL-AGVICVLVSIYKLTDEPKFLELAISLGRILM-EK-IVGNDSSETVL 788 (963)
T ss_pred HHHHHHHHHHHHHHhh-----c--cCcchhhcc-HHHHHHHHHHHhhccchHHHHHHHHHHHHHH-HH-hhcccccccee
Confidence 8888888766544321 0 101111111 1455789999999999999999976543221 11 111221 1
Q ss_pred -CCCCcCCCcchhHHHHHHHHHhCCchHHHHHHHHHHH---hhccC--eeeccCCC--CCCCC----CCCC---------
Q 007471 345 -SGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDI---VNSSH--TYATGGTS--VGEFW----SDPK--------- 403 (602)
Q Consensus 345 -~g~hant~iP~~~G~a~~Y~~TGD~~y~~aa~~~w~~---v~~~~--~y~TGG~g--~~E~f----~~~~--------- 403 (602)
.-.|-++.| +.-.+..|++|||+.++...+...-. -.+.+ -.+.|-.| .+--. -.+.
T Consensus 789 ~gfshg~sgi--~~tL~~ly~~T~e~~l~~~i~e~~~~Er~~f~~~~~~Wc~g~~gilv~rl~l~~~~~de~i~~Ei~~~ 866 (963)
T COG4403 789 LGFSHGASGI--ILTLLKLYEATGEESLLKKIKELLSYERMKFSDKFTRWCSGAPGILVSRLLLKKIYDDESIDREIQQA 866 (963)
T ss_pred cccccchHHH--HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeechhhhhhhcchHHHHHHHHHH
Confidence 112321111 22346779999999987765532111 11111 12344333 11000 0111
Q ss_pred ---cccCCCCcccccccchhHHHHHHHHHHccCCcchhHHHH
Q 007471 404 ---RLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYY 442 (602)
Q Consensus 404 ---~L~~~l~~~~~ETCat~~~l~l~~~L~~~tgd~~YaD~~ 442 (602)
-+.+.++ ...=+|...+.+.+...-.+..+|+.-...+
T Consensus 867 l~~~i~~glg-n~~~Chgdfg~ie~l~~~a~~l~~~~l~es~ 907 (963)
T COG4403 867 LKTIINNGLG-NDSLCHGDFGIIEVLLHYAKILSDSELLESA 907 (963)
T ss_pred HHHHHhccCC-CccccccchHHHHHHHHHHHHhCCHHHHHHH
Confidence 1122222 3456777788887777777778887655443
No 51
>PLN02420 endoglucanase
Probab=82.52 E-value=22 Score=40.53 Aligned_cols=169 Identities=11% Similarity=0.035 Sum_probs=82.1
Q ss_pred hHHhcCCCCCCC-----CCCCCCCCCcCcc-ccchhhHHHHHHHHHHh--------cCChHHHHHHHHHHHHHHHhhhhc
Q 007471 154 FRKTARLPAPGE-----PYGGWEEPSCELR-GHFVGHYLSASALMWAS--------THNESLKEKMSAVVSALSACQKEI 219 (602)
Q Consensus 154 Fr~~AGl~~~g~-----~~ggWe~~d~~lr-Gh~~g~wLsa~a~~~a~--------t~D~~L~~k~~~~Vd~l~~~Q~~~ 219 (602)
+|..++++ +|. -.|||.+.+--+. |-..+.=+.-+++.+.. -+-+.+++.++.-+|.|.++|.
T Consensus 69 Wr~~s~~~-Dg~~~~~DlsGGwyDAGD~~Kf~~p~a~t~~~L~w~~~ef~d~~~~~g~~~d~Ldeikw~lD~llk~~~-- 145 (525)
T PLN02420 69 WRDHSGLT-DGLEQGVDLVGGYHDAGDHVKFGLPMAFTVTMLSWSVIEYGDQLASTGELSHALEAIKWGTDYFIKAHT-- 145 (525)
T ss_pred ccccCcCc-CCCcCcccCCCcceecCccceecchHHHHHHHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhCc--
Confidence 67777766 332 3478976542111 11122222233333322 2347899999999999999997
Q ss_pred CCcceecCC-----C-chhhhhhc---cCCccc-----cc-chHHHHHHHHHHHHHHcCC------HhHHHHHHHHHHHH
Q 007471 220 GSGYLSAFP-----T-EQFDRLEA---LIPVWA-----PY-YTIHKILAGLLDQYTYADN------AEALRMTTWMVEYF 278 (602)
Q Consensus 220 ~dGYL~~~~-----~-~~~~~~~~---~~~~W~-----py-y~~Hki~aGLl~~y~~tG~------~~aL~ia~r~aD~~ 278 (602)
.++-+-.-- + ..|.+-+. .|.+.. |- -.--.+-|+|..++++-.+ ++.|+.|+++-++.
T Consensus 146 ~~~~~~~qvGdg~~DH~~w~~Pe~~~~~R~~~~i~~~~pgsd~aa~~AAALA~AS~vfk~~D~~YA~~~L~~Ak~ly~fA 225 (525)
T PLN02420 146 SPNVLWAEVGDGDTDHYCWQRPEDMTTSRRAFKIDENNPGSDIAGETAAAMAAASIVFRSTNPHYSHLLLHHAQQLFEFG 225 (525)
T ss_pred CCCceEEeeCCCCcccccccChhhccccCceEEecCCCCccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 433221000 0 01111111 111100 00 0011233455455555443 35788888888877
Q ss_pred HHHhhhhhhcchhhh-hhhccccc-cc---chHHHHHHHHHHcCCHHHHHHHhhcc
Q 007471 279 YNRVQNVIKKYSIER-HWQTLNEE-AG---GMNDVLYKLFCITQDPKHLMLAHLFD 329 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~-~~~~l~~E-~G---Gm~~~L~~LY~~TGd~ryLdlA~~f~ 329 (602)
.+.-+. +.... .....-.. .+ -+.-+-+|||+.|||+.||+.+....
T Consensus 226 ~~~~g~----y~~~~~~~~g~Y~s~s~y~DEl~WAAawLY~ATgd~~Yl~~a~~~~ 277 (525)
T PLN02420 226 DKYRGK----YDESLKVVKSYYASVSGYMDELLWGATWLYRATDNEHYMSYVVDMA 277 (525)
T ss_pred HhcCCc----cCCCCcccCCCCCCcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 653221 11000 00000000 00 12356789999999999999886543
No 52
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=82.21 E-value=2.8 Score=44.23 Aligned_cols=180 Identities=17% Similarity=0.117 Sum_probs=94.3
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHhhhhcCCcceecCCCchhhhh-h---ccCCcccccchHHHHHHHHHHHH-HHcCCHh
Q 007471 192 MWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRL-E---ALIPVWAPYYTIHKILAGLLDQY-TYADNAE 266 (602)
Q Consensus 192 ~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~~~~~~~~-~---~~~~~W~pyy~~Hki~aGLl~~y-~~tG~~~ 266 (602)
.+..++++++.+.+..+++.|.+... ... .. . ......| . +..-.|. .+| |..+|...| +.+++++
T Consensus 118 ~~~~~~~~~~l~~i~~~~~~l~~~~~--~~~-~~-~-~~~~~~~~~~~~~~G~aHG--~~G--i~~~L~~~~~~~~~~~~ 188 (355)
T PF05147_consen 118 LYEKTKDPKYLDIIEKILEKLLESII--NDD-PS-E-NQIGSEWKEGFINLGFAHG--IAG--ILYALLRLYKKGTKDPE 188 (355)
T ss_dssp HHHHHCCHHS-HHHHHHHHHCCCHHC--CCH-TC-C-GSSSHHCHTTBEE-STTTS--HHH--HHHHHCHCCHHT--HHH
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHh--hcc-cc-c-CCCccccCCCCccCCcccc--HHH--HHHHHHHhhhcccCchh
Confidence 34455888888999999988887776 321 00 0 0000111 0 0111121 122 344555566 5888999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcchhhhhhhcc--ccc--cc--chHHHHHHHHHHcCCHHHHHHHhhcccccccchhhhc
Q 007471 267 ALRMTTWMVEYFYNRVQNVIKKYSIERHWQTL--NEE--AG--GMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQ 340 (602)
Q Consensus 267 aL~ia~r~aD~~~~~~~~~~~~~~~~~~~~~l--~~E--~G--Gm~~~L~~LY~~TGd~ryLdlA~~f~~~~~~~~la~~ 340 (602)
.++++.+..+++.+.......++......... ... +| ||..++.++++.++|+.+.+.++.+.+...-... .
T Consensus 189 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WC~G~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 266 (355)
T PF05147_consen 189 YLKLIEQILNFLLKHFNTDDGGWPDNRNNSNYKSRPSWCYGSPGILLALLKAYKILDDEEYDEEAEQALESILQKGL--F 266 (355)
T ss_dssp HHHCHHHHHHHHHHC--TGCCT--SECTHHHHHC--SSSSSHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH-T--C
T ss_pred HHHHHHHHHHHHHHhcCcccCCCCCCCCccccccccccccCcHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHccc--c
Confidence 99999999999988763211111100000000 000 23 7889999999999999999988876543210000 0
Q ss_pred CCCCCCCCcCCCcchhHHHHHHHHHhCCchHHHHHHHHHHHhhc
Q 007471 341 ADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNS 384 (602)
Q Consensus 341 ~d~l~g~hant~iP~~~G~a~~Y~~TGD~~y~~aa~~~w~~v~~ 384 (602)
.....-.|-... ++.-....|+.++++.|++.++.+++.+.+
T Consensus 267 ~~~~~lCHG~aG--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (355)
T PF05147_consen 267 LNNPSLCHGTAG--ILEILLDLYKYTGDEEYKELANKLIQKLLS 308 (355)
T ss_dssp TTSS-STTSHHH--HHHHHHHHHHHH--HCCHHHHHHHHHHHCT
T ss_pred CCCCceeCchHH--hHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 011111221100 012246678999999999999999998874
No 53
>PLN03009 cellulase
Probab=79.36 E-value=35 Score=38.72 Aligned_cols=125 Identities=13% Similarity=-0.044 Sum_probs=66.0
Q ss_pred CChHHHHHHHHHHHHHHHhhhhcCCcceecC-CC-----chhhhhhc---cCCccc-----cc-chHHHHHHHHHHHHHH
Q 007471 197 HNESLKEKMSAVVSALSACQKEIGSGYLSAF-PT-----EQFDRLEA---LIPVWA-----PY-YTIHKILAGLLDQYTY 261 (602)
Q Consensus 197 ~D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~-~~-----~~~~~~~~---~~~~W~-----py-y~~Hki~aGLl~~y~~ 261 (602)
+-+.+++.++.-+|.|.++|. .+|-+-.- .+ ..|.+-+. .+.+.. |- -+--.+-|+|..++++
T Consensus 111 ~~~diLdeikw~~D~llkm~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~~~R~~~~is~~~p~sd~a~~~AAalA~as~v 188 (495)
T PLN03009 111 ELRNSLVAIRWATDYLLKTVS--QPNRIFVQVGDPIADHNCWERPEDMDTPRTVYAVNAPNPASDVAGETAAALAASSMA 188 (495)
T ss_pred ccHHHHHHHHHHHHHHHHccc--CcCeEEEEeCCCCCCcccCcChhhcCCCCeEEEecCCCCccHHHHHHHHHHHHHHHh
Confidence 347789999999999999987 45433211 00 01111111 111110 00 0023445666566666
Q ss_pred cCC------HhHHHHHHHHHHHHHHHhhhhhhcchhhh----hhhccccc-cc---chHHHHHHHHHHcCCHHHHHHHhh
Q 007471 262 ADN------AEALRMTTWMVEYFYNRVQNVIKKYSIER----HWQTLNEE-AG---GMNDVLYKLFCITQDPKHLMLAHL 327 (602)
Q Consensus 262 tG~------~~aL~ia~r~aD~~~~~~~~~~~~~~~~~----~~~~l~~E-~G---Gm~~~L~~LY~~TGd~ryLdlA~~ 327 (602)
-.+ ++.|+.|+++-+|..+.-+. +.... .....-.. .| -+..+-+|||+.|||++||+-++.
T Consensus 189 fk~~D~~YA~~ll~~Ak~ly~~a~~~~g~----y~~~~~~~~g~~~~Y~~~s~~~DE~~WAAawLy~aTgd~~Yl~~~~~ 264 (495)
T PLN03009 189 FRSSDPGYSETLLRNAIKTFQFADMYRGA----YSDNDDIKDGVCPFYCDFDGYQDELLWGAAWLRRASGDDSYLNYIEN 264 (495)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHcCCC----ccCCccccCccccCcCCcccccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 543 35788888888887754221 11100 00000001 11 123566899999999999998764
No 54
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=79.34 E-value=2 Score=37.42 Aligned_cols=79 Identities=14% Similarity=0.063 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhhcCCcceecCCCchhhhhhccCCcccccchHHHHHHHHHHHHHHcC
Q 007471 184 HYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYAD 263 (602)
Q Consensus 184 ~wLsa~a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~~~~~~~~~~~~~~W~pyy~~Hki~aGLl~~y~~tG 263 (602)
....+++.++...+++...+.+++.++.|.++|. +||-++..+... .+++-+- + ....+++
T Consensus 27 ~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~--~dG~w~~~~~~~------------~~~t~~~----~-~~l~~~~ 87 (109)
T PF13243_consen 27 FVTAALILALAAAGDAAVDEAIKKAIDWLLSHQN--PDGGWGYSGGEY------------VSMTAAA----I-AALALAG 87 (109)
T ss_dssp --------------TS-SSBSSHHHHHHHHH-----TTS--S-TS--H------------HHHHHHH----H-HHHHHHH
T ss_pred cccccccccccccCCCCcHHHHHHHHHHHHHhcC--CCCCCCCcCCCC------------HHHHHHH----H-HHHHHhC
Confidence 3444455556666788999999999999999999 898654332110 1222222 1 2222333
Q ss_pred CHhHHHHHHHHHHHHHHH
Q 007471 264 NAEALRMTTWMVEYFYNR 281 (602)
Q Consensus 264 ~~~aL~ia~r~aD~~~~~ 281 (602)
...-.+.+.|..+||.+.
T Consensus 88 ~~~~~~~~~r~~~wi~~~ 105 (109)
T PF13243_consen 88 VYPDDEAVERGLEWILSH 105 (109)
T ss_dssp TT--HHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHc
Confidence 333445577888888765
No 55
>PLN02613 endoglucanase
Probab=79.21 E-value=29 Score=39.31 Aligned_cols=122 Identities=13% Similarity=0.052 Sum_probs=65.4
Q ss_pred CChHHHHHHHHHHHHHHHhhhhc-------CCcceecCCCchhhhhhc---cCCccc-----ccc-hHHHHHHHHHHHHH
Q 007471 197 HNESLKEKMSAVVSALSACQKEI-------GSGYLSAFPTEQFDRLEA---LIPVWA-----PYY-TIHKILAGLLDQYT 260 (602)
Q Consensus 197 ~D~~L~~k~~~~Vd~l~~~Q~~~-------~dGYL~~~~~~~~~~~~~---~~~~W~-----pyy-~~Hki~aGLl~~y~ 260 (602)
+.+.+++.++.-+|.|.++|... +||-. .. ..|.+-+. .+.+.. |-- .--.+-|+|..+++
T Consensus 110 ~~~d~ldeikw~lD~llkm~~~~~~~~~QVGdg~~--dH-~~W~~Pe~~~~~R~~~~~t~~~pgTd~a~~~AAALAaas~ 186 (498)
T PLN02613 110 QLGYLRSAIRWGTDFILRAHTSPTTLYTQVGDGNA--DH-QCWERPEDMDTPRTLYKITSSSPGSEAAGEAAAALAAASL 186 (498)
T ss_pred CchHHHHHHHHHHHHHHHhccCCCeEEEEeCCCCc--cc-cccCCccccCCCCeeEecCCCCCccHHHHHHHHHHHHHHH
Confidence 35789999999999999998621 33311 00 11111111 111110 100 01124456655666
Q ss_pred HcCC------HhHHHHHHHHHHHHHHHhhhhhhcchhhhhhhcccccccc----hHHHHHHHHHHcCCHHHHHHHhhc
Q 007471 261 YADN------AEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGG----MNDVLYKLFCITQDPKHLMLAHLF 328 (602)
Q Consensus 261 ~tG~------~~aL~ia~r~aD~~~~~~~~~~~~~~~~~~~~~l~~E~GG----m~~~L~~LY~~TGd~ryLdlA~~f 328 (602)
+-.+ ++.|+.|+++-+|..+.-+. +... .+.-...+| +..+-++||..|||++|++.++..
T Consensus 187 vfk~~D~~yA~~~L~~Ak~ly~~a~~~~g~----y~~~---~~~y~s~s~~~DEl~WAAawLy~aTGd~~Yl~~~~~~ 257 (498)
T PLN02613 187 VFKDVDSSYSSKLLNHARSLFEFADKYRGS----YQAS---CPFYCSYSGYQDELLWAAAWLYKATGEKKYLNYVISN 257 (498)
T ss_pred hcccCCHHHHHHHHHHHHHHHHHHHhCCCC----cCCC---CCcccccCccchHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 5543 36788888888887754221 1100 011111111 235668999999999999987654
No 56
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=78.90 E-value=13 Score=39.64 Aligned_cols=143 Identities=17% Similarity=0.365 Sum_probs=79.3
Q ss_pred CCCCCCCCCcCccccchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhhcCCcceecCCCchhhhhhccCCccccc
Q 007471 166 PYGGWEEPSCELRGHFVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPY 245 (602)
Q Consensus 166 ~~ggWe~~d~~lrGh~~g~wLsa~a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~~~~~~~~~~~~~~W~py 245 (602)
+.|.|..-||.+ |--.--|-+-+-..|...+|+.+.++.+.--+.|.+--.+ +.=++.- -+|-|.
T Consensus 235 hsgdw~rkdsgi-gagidsyyey~lkayillgddsfldrfn~hydai~ryi~k-~pi~ldv-------------hihkp~ 299 (587)
T KOG2430|consen 235 HSGDWTRKDSGI-GAGIDSYYEYLLKAYILLGDDSFLDRFNKHYDAIKRYINK-GPIFLDV-------------HIHKPM 299 (587)
T ss_pred ccCcceecccCc-CcchHHHHHHHHHHhheeccHHHHHHHHHHHHHHHHHhcC-CCeEEEE-------------ecccch
Confidence 557798877753 2223356666677788899999999998888877654431 1111111 112232
Q ss_pred chHHHHHHHHHHHHH----HcCCH-hHHHHHHHHHHHHHHHhhh---hhhcch--hhhhhh--cccccccchHHHHHHHH
Q 007471 246 YTIHKILAGLLDQYT----YADNA-EALRMTTWMVEYFYNRVQN---VIKKYS--IERHWQ--TLNEEAGGMNDVLYKLF 313 (602)
Q Consensus 246 y~~Hki~aGLl~~y~----~tG~~-~aL~ia~r~aD~~~~~~~~---~~~~~~--~~~~~~--~l~~E~GGm~~~L~~LY 313 (602)
-+..-.|.+|++.+- +.|+- .+.+ +-..+.+.+.. +++.+. -.-||. ++.+|+ .++-+-||
T Consensus 300 l~ar~~mdallaf~pglqvlkgdik~aie----~heml~qvikkh~flpeaft~df~vhwaehpirpef---aestyfly 372 (587)
T KOG2430|consen 300 LAARGFMDALLAFFPGLQVLKGDIKEAIE----MHEMLFQVIKKHKFLPEAFTHDFQVHWAEHPIRPEF---AESTYFLY 372 (587)
T ss_pred hhHhhHHHHHHHhCcchhhhccccHHHHH----HHHHHHHHHHHcccChHhhcccceeecccCCCChhh---hhhheeee
Confidence 222222344443321 22332 2333 33333333221 111111 123564 567786 58888999
Q ss_pred HHcCCHHHHHHHhhccc
Q 007471 314 CITQDPKHLMLAHLFDK 330 (602)
Q Consensus 314 ~~TGd~ryLdlA~~f~~ 330 (602)
+.||||-||+.|+.+.+
T Consensus 373 kat~dp~yl~v~k~iid 389 (587)
T KOG2430|consen 373 KATGDPHYLEVAKQIID 389 (587)
T ss_pred cccCCchHHHHHHHHHH
Confidence 99999999999998865
No 57
>PLN00119 endoglucanase
Probab=78.58 E-value=35 Score=38.62 Aligned_cols=125 Identities=10% Similarity=-0.065 Sum_probs=65.4
Q ss_pred ChHHHHHHHHHHHHHHHhhhhcCCcceecCC-C-----chhhhhhc---cCCccc-----cc-chHHHHHHHHHHHHHHc
Q 007471 198 NESLKEKMSAVVSALSACQKEIGSGYLSAFP-T-----EQFDRLEA---LIPVWA-----PY-YTIHKILAGLLDQYTYA 262 (602)
Q Consensus 198 D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~-~-----~~~~~~~~---~~~~W~-----py-y~~Hki~aGLl~~y~~t 262 (602)
-+.+++.++.-.|.|.++|. .++.+-.-- + ..|.+-++ .|.+.. |= -+--.+-|+|..++++-
T Consensus 116 ~~~~lde~kw~~Dyllk~~~--~~~~~y~qVgdg~~DH~~W~~Pe~~~~~R~~y~i~~~~pgSd~a~~~AAAlA~as~vf 193 (489)
T PLN00119 116 LGNALAALKWATDYLIKAHP--QPNVLYGQVGDGNSDHACWMRPEDMTTPRTSYRIDAQHPGSDLAGETAAAMAAASIAF 193 (489)
T ss_pred cHHHHHHHHHHHHHHHHhcC--CCCeEEEEeccCCCcccccCChhhCCCcCceeecCCCCCchHHHHHHHHHHHHHHHHc
Confidence 35789999999999999997 544332110 0 11211111 111100 00 01123445555555554
Q ss_pred CC------HhHHHHHHHHHHHHHHHhhhhhhcchhhhhhh-ccccccc---chHHHHHHHHHHcCCHHHHHHHhhc
Q 007471 263 DN------AEALRMTTWMVEYFYNRVQNVIKKYSIERHWQ-TLNEEAG---GMNDVLYKLFCITQDPKHLMLAHLF 328 (602)
Q Consensus 263 G~------~~aL~ia~r~aD~~~~~~~~~~~~~~~~~~~~-~l~~E~G---Gm~~~L~~LY~~TGd~ryLdlA~~f 328 (602)
.+ ++.|+.|+++-+|..+.-+. +....... ..=++.+ .+..+-++||+.|||+.|++.++..
T Consensus 194 k~~D~~yA~~lL~~Ak~~y~fA~~~~g~----y~~~~~~~~g~Y~ss~~~DEl~WAAawLY~aTgd~~Yl~~~~~~ 265 (489)
T PLN00119 194 APSDPAYASILIGHAKDLFEFAKAHPGL----YQNSIPNAGGFYASSGYEDELLWAAAWLHRATNDQTYLDYLTQA 265 (489)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhCCCc----ccCCCCCCCCCCCCCchhhHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 43 36788888888887764221 10000000 0000101 1345668999999999999987654
No 58
>PLN02308 endoglucanase
Probab=77.26 E-value=23 Score=40.08 Aligned_cols=124 Identities=12% Similarity=-0.021 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCCcceecC-CC-----chhhhhhc---cCCccc-----cc-chHHHHHHHHHHHHHHcC
Q 007471 199 ESLKEKMSAVVSALSACQKEIGSGYLSAF-PT-----EQFDRLEA---LIPVWA-----PY-YTIHKILAGLLDQYTYAD 263 (602)
Q Consensus 199 ~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~-~~-----~~~~~~~~---~~~~W~-----py-y~~Hki~aGLl~~y~~tG 263 (602)
+.+++.++.-+|.|.++|. ++|.+-.- .+ ..|.+-+. .+.+.. |= -.--.+-|+|..++++-.
T Consensus 112 ~~~ldeikw~~D~llkm~~--~~~~vy~qVg~~~~dh~~W~~Pe~~~~~R~~y~~~~~~pgSd~a~~~AAAlA~as~vf~ 189 (492)
T PLN02308 112 ENAVKAVKWATDYLMKATA--IPNVVYVQVGDAYSDHNCWERPEDMDTLRTVYKIDPSHPGSDVAGETAAALAAASIVFR 189 (492)
T ss_pred HHHHHHHHHHHHHHHHhcC--CCCeEEEEecCCCCCccCCCChhHcCCcceEEecCCCCCcchHHHHHHHHHHHHHHhcc
Confidence 4678888899999999998 66654211 01 01111111 111110 00 012234456656666654
Q ss_pred --C----HhHHHHHHHHHHHHHHHhhhhhhcchhhhhhh--cccccccc----hHHHHHHHHHHcCCHHHHHHHhhc
Q 007471 264 --N----AEALRMTTWMVEYFYNRVQNVIKKYSIERHWQ--TLNEEAGG----MNDVLYKLFCITQDPKHLMLAHLF 328 (602)
Q Consensus 264 --~----~~aL~ia~r~aD~~~~~~~~~~~~~~~~~~~~--~l~~E~GG----m~~~L~~LY~~TGd~ryLdlA~~f 328 (602)
| ++.|+.|+++-+|..+.-+. +....... ..-....| +..+-+|||+.|||++||+.++..
T Consensus 190 ~~D~~YA~~lL~~Ak~ly~fa~~~~g~----y~~~~~~~~~~~Y~~~s~~~DEl~WAAawLy~ATgd~~Yl~~~~~~ 262 (492)
T PLN02308 190 KRDPAYSRLLLDRAVRVFAFADKYRGA----YSSSLHAAVCPFYCDFNGYQDELLWGAAWLHKASRRREYREYIVKN 262 (492)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHcCCc----ccCCCCcccCCCcCCCCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 2 36888888888887764221 11100000 00001011 235668999999999999977653
No 59
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=76.85 E-value=2.7 Score=45.80 Aligned_cols=79 Identities=23% Similarity=0.272 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhh--hhcchh---------hhhhhc--ccccccchHHHHHHHHHHc
Q 007471 250 KILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNV--IKKYSI---------ERHWQT--LNEEAGGMNDVLYKLFCIT 316 (602)
Q Consensus 250 ki~aGLl~~y~~tG~~~aL~ia~r~aD~~~~~~~~~--~~~~~~---------~~~~~~--l~~E~GGm~~~L~~LY~~T 316 (602)
.++.||+.+|.++|++-.|+.|+.++|.+...|... ++ +++ ...|.. -..|+-.+-+-+-.|-++|
T Consensus 179 RvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sps~IP-ysdVnL~~~~A~~p~~~~~SStaEvttiQlEfr~Ls~lt 257 (546)
T KOG2431|consen 179 RVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSPSPIP-YSDVNLGTGTAHPPRWTGDSSTAEVTTIQLEFRYLSRLT 257 (546)
T ss_pred HHHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCCCCCC-cceeecCCCcccCCCCCCccchhhheeeeeeHHHHHhhc
Confidence 478999999999999999999999999999888521 11 110 011211 1112222334567789999
Q ss_pred CCHHHHHHHhhcc
Q 007471 317 QDPKHLMLAHLFD 329 (602)
Q Consensus 317 Gd~ryLdlA~~f~ 329 (602)
||++|-++|.+..
T Consensus 258 gd~kY~~~a~kv~ 270 (546)
T KOG2431|consen 258 GDPKYEELAEKVT 270 (546)
T ss_pred CCchHHHHHHHHH
Confidence 9999999998864
No 60
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=72.72 E-value=14 Score=41.30 Aligned_cols=87 Identities=17% Similarity=0.285 Sum_probs=54.2
Q ss_pred hhhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhhcCCcceecCCCchhhhhhccCCcccccchHHHHHHHHHHHHHH
Q 007471 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTY 261 (602)
Q Consensus 182 ~g~wLsa~a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~~~~~~~~~~~~~~W~pyy~~Hki~aGLl~~y~~ 261 (602)
-++||=+++..|..++|++|.+-+..|...+ +=|=|+...... .++....+.-.|| .+.++++.|++
T Consensus 386 ~~~yll~~vra~~~s~D~~Lw~~~~~m~~~~-------gLGdig~~~~~~-~~~~~~~~~~sp~-----~L~allEL~~a 452 (557)
T PF06917_consen 386 DPDYLLPYVRAYRLSRDPELWDLARTMAHHF-------GLGDIGNAAGKE-PRVNMQTDNASPY-----LLFALLELYQA 452 (557)
T ss_dssp -HHHHHHHHHHHHHS--HHHHHHHHHHHHHT-------T-EE-TTBTTBS--EE-TT-----HH-----HHHHHHHHHHH
T ss_pred chhHhHHHHHHHHcCCCHHHHHHHHHHHhhc-------CcccccCccccc-cccccCCCCCCHH-----HHHHHHHHHHH
Confidence 4789999999999999999998887777633 456566543211 0111111222344 34566799999
Q ss_pred cCCHhHHHHHHHHHHHHHHH
Q 007471 262 ADNAEALRMTTWMVEYFYNR 281 (602)
Q Consensus 262 tG~~~aL~ia~r~aD~~~~~ 281 (602)
|++++.++.|.++++-+.++
T Consensus 453 tq~~~~l~lA~~~g~~l~~~ 472 (557)
T PF06917_consen 453 TQDARYLELADQVGENLFEQ 472 (557)
T ss_dssp H--HHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999987764
No 61
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=65.60 E-value=14 Score=38.91 Aligned_cols=106 Identities=14% Similarity=0.076 Sum_probs=62.1
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHhhccCeeeccCCCCCCCCCCCCcccCCCCcccccccchhHHHHHHHHHHccCCcc--
Q 007471 359 SQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEI-- 436 (602)
Q Consensus 359 ~a~~Y~~TGD~~y~~aa~~~w~~v~~~~~y~TGG~g~~E~f~~~~~L~~~l~~~~~ETCat~~~l~l~~~L~~~tgd~-- 436 (602)
.++.|..|+|++|++++.+..+.+.+ -.|..||.... |-......+.+ +---=+.++.|.+.+....-.++-
T Consensus 48 La~~y~~t~d~~y~~A~~kgl~ylL~-aQypnGGWPQ~--yP~~~~Y~~~I---TfNDdam~~vl~lL~~v~~~~~~~~~ 121 (289)
T PF09492_consen 48 LARVYQATKDPRYREAFLKGLDYLLK-AQYPNGGWPQF--YPLRGGYHDHI---TFNDDAMVNVLELLRDVAEGKGDFAF 121 (289)
T ss_dssp HHHHHHHCG-HHHHHHHHHHHHHHHH-HS-TTS--BSE--CS--SGGGGSE---E-GGGHHHHHHHHHHHHHCT-TTSTT
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHH-hhCCCCCCCcc--CCCCCCCCCce---EEccHHHHHHHHHHHHHHhhcCCccc
Confidence 47889999999999999999999984 77899998752 11111111111 112235788899999998888887
Q ss_pred -------hhHHHHHHHHhhhhcccCC----CCCCCeeEEecC-CCCC
Q 007471 437 -------AYADYYERSLTNGVLGIQR----GTEPGVMIYLLP-LAPG 471 (602)
Q Consensus 437 -------~YaD~~Er~lyN~ila~~~----~~d~g~~~Y~~p-l~~g 471 (602)
++.+.++|.+- -||..|- ++-.|+-||..- |.|.
T Consensus 122 v~~~~~~r~~~A~~kgi~-ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa 167 (289)
T PF09492_consen 122 VDESLRARARAAVDKGID-CILKTQIRQNGKLTAWCQQHDEVTLQPA 167 (289)
T ss_dssp S-HHHHHHHHHHHHHHHH-HHHHHS-EETTEE----SEE-TTT-SB-
T ss_pred cCHHHHHHHHHHHHHHHH-HHHHHHcccCCCCCchhhccCccccccc
Confidence 88888888764 4444432 123455677554 5554
No 62
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=62.83 E-value=63 Score=34.08 Aligned_cols=91 Identities=15% Similarity=0.124 Sum_probs=55.1
Q ss_pred hhhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhhcCCc-ceecCCCchhhhhhccCCcccccch---HHHHHHHHHH
Q 007471 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSG-YLSAFPTEQFDRLEALIPVWAPYYT---IHKILAGLLD 257 (602)
Q Consensus 182 ~g~wLsa~a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~dG-YL~~~~~~~~~~~~~~~~~W~pyy~---~Hki~aGLl~ 257 (602)
+--=|.=++.+|..++|+..++.+.+-|+.|++.|. ++| |=.-+|.. ..--.+.+|+. .| ++..|.+
T Consensus 46 T~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQy--pnGGWPQf~p~~------~~Y~~~ITfND~am~~-vl~lL~~ 116 (290)
T TIGR02474 46 TVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQY--PNGGWPQFYPLK------GGYSDAITYNDNAMVN-VLTLLDD 116 (290)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhC--CCCCcCcccCCc------CCcccccccCcHHHHH-HHHHHHH
Confidence 334455678888899999999999999999999999 665 32222221 00011112222 22 2223333
Q ss_pred HHHHcC---------CHhHHHHHHHHHHHHHHH
Q 007471 258 QYTYAD---------NAEALRMTTWMVEYFYNR 281 (602)
Q Consensus 258 ~y~~tG---------~~~aL~ia~r~aD~~~~~ 281 (602)
.++..+ .+++...+.|..||+.+.
T Consensus 117 i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILkt 149 (290)
T TIGR02474 117 IANGKDPFDVFPDSTRTRAKTAVTKGIECILKT 149 (290)
T ss_pred HHhccCCcccccHHHHHHHHHHHHHHHHHHHHh
Confidence 443222 257888888888888753
No 63
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=61.73 E-value=65 Score=34.49 Aligned_cols=94 Identities=16% Similarity=0.151 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhhcCCcceecC---CCchhhhhhccCC-cccccchHHHHHHHHHHH
Q 007471 183 GHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAF---PTEQFDRLEALIP-VWAPYYTIHKILAGLLDQ 258 (602)
Q Consensus 183 g~wLsa~a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~---~~~~~~~~~~~~~-~W~pyy~~Hki~aGLl~~ 258 (602)
|-.+--.|.+-..|+++-+.+++...+|-|-+..+. ..--.|+. .+..|.|-.++-. .-..||-. ++.+
T Consensus 188 gtlilefaals~~tg~~ifee~arkaldflwekr~r-ss~l~g~~inihsgdw~rkdsgigagidsyyey------~lka 260 (587)
T KOG2430|consen 188 GTLILEFAALSRFTGAPIFEEKARKALDFLWEKRHR-SSDLMGTTINIHSGDWTRKDSGIGAGIDSYYEY------LLKA 260 (587)
T ss_pred chhhhhHHHHhhccCChhhHHHHHHHHHHHHHHhcc-cccccceeEEeccCcceecccCcCcchHHHHHH------HHHH
Confidence 444444455567899999999999999998766552 22222221 1223333222111 11135422 3467
Q ss_pred HHHcCCHhHHHHHHHHHHHHHHHhh
Q 007471 259 YTYADNAEALRMTTWMVEYFYNRVQ 283 (602)
Q Consensus 259 y~~tG~~~aL~ia~r~aD~~~~~~~ 283 (602)
|-+.|++..|+-.-+.-|-+.+.+.
T Consensus 261 yillgddsfldrfn~hydai~ryi~ 285 (587)
T KOG2430|consen 261 YILLGDDSFLDRFNKHYDAIKRYIN 285 (587)
T ss_pred hheeccHHHHHHHHHHHHHHHHHhc
Confidence 8888999999988888887776654
No 64
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=61.39 E-value=35 Score=35.94 Aligned_cols=105 Identities=10% Similarity=0.006 Sum_probs=67.4
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHhhccCeeeccCCCCCCCCCCCCcccCCCCcccccccchhHHHHHHHHHHccCCc---
Q 007471 359 SQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKE--- 435 (602)
Q Consensus 359 ~a~~Y~~TGD~~y~~aa~~~w~~v~~~~~y~TGG~g~~E~f~~~~~L~~~l~~~~~ETCat~~~l~l~~~L~~~tgd--- 435 (602)
.++.|..|+|+.|++++.+..+.+.. -.|..||....+-....| .++++.. -=+.++.|.+...+....++
T Consensus 53 La~~y~~t~d~~y~~A~~rgld~LL~-aQypnGGWPQf~p~~~~Y--~~~ITfN---D~am~~vl~lL~~i~~~~~~~~~ 126 (290)
T TIGR02474 53 LAQVYQQEKNAKYRDAARKGIEYLLK-AQYPNGGWPQFYPLKGGY--SDAITYN---DNAMVNVLTLLDDIANGKDPFDV 126 (290)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHh-hhCCCCCcCcccCCcCCc--ccccccC---cHHHHHHHHHHHHHHhccCCccc
Confidence 47889999999999999999999984 788999998766544422 2222210 01234667777666543332
Q ss_pred ------chhHHHHHHHHhhhhcccCCCCC-----CCeeEEec-CCCCC
Q 007471 436 ------IAYADYYERSLTNGVLGIQRGTE-----PGVMIYLL-PLAPG 471 (602)
Q Consensus 436 ------~~YaD~~Er~lyN~ila~~~~~d-----~g~~~Y~~-pl~~g 471 (602)
.++...++|.+- -||.+|-+ + .|.-+|.. .|.|.
T Consensus 127 ~~~~~~~r~~~Ai~Rgid-~ILktQ~~-~gg~~t~Wg~Qyd~~tl~Pa 172 (290)
T TIGR02474 127 FPDSTRTRAKTAVTKGIE-CILKTQVV-QNGKLTVWCQQHDALTLQPK 172 (290)
T ss_pred ccHHHHHHHHHHHHHHHH-HHHHhhcc-cCCcCCchhhccCccccccc
Confidence 577888888765 34555543 3 34556764 45554
No 65
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=59.36 E-value=50 Score=34.79 Aligned_cols=91 Identities=12% Similarity=0.112 Sum_probs=55.9
Q ss_pred hhhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhhcCC-cceecCCCch-hhhhhccCCcccccchHH--HHHHHHHH
Q 007471 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGS-GYLSAFPTEQ-FDRLEALIPVWAPYYTIH--KILAGLLD 257 (602)
Q Consensus 182 ~g~wLsa~a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~d-GYL~~~~~~~-~~~~~~~~~~W~pyy~~H--ki~aGLl~ 257 (602)
+-.=|.-++.+|..++|+++++-+.+-|+.|+++|- ++ ||=.-||... +.+ +.-|+..- -++-=|.+
T Consensus 41 T~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQy--pnGGWPQ~yP~~~~Y~~-------~ITfNDdam~~vl~lL~~ 111 (289)
T PF09492_consen 41 TTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQY--PNGGWPQFYPLRGGYHD-------HITFNDDAMVNVLELLRD 111 (289)
T ss_dssp THHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS---TTS--BSECS--SGGGG-------SEE-GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhC--CCCCCCccCCCCCCCCC-------ceEEccHHHHHHHHHHHH
Confidence 445567789999999999999999999999999999 55 4555554311 000 01111110 11222335
Q ss_pred HHHHcCCH---------hHHHHHHHHHHHHHHH
Q 007471 258 QYTYADNA---------EALRMTTWMVEYFYNR 281 (602)
Q Consensus 258 ~y~~tG~~---------~aL~ia~r~aD~~~~~ 281 (602)
.++..++- ++.+.+.|-.|+|++.
T Consensus 112 v~~~~~~~~~v~~~~~~r~~~A~~kgi~ciL~t 144 (289)
T PF09492_consen 112 VAEGKGDFAFVDESLRARARAAVDKGIDCILKT 144 (289)
T ss_dssp HHCT-TTSTTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 56556655 8999999999999864
No 66
>PHA02811 putative host range protein; Provisional
Probab=59.07 E-value=14 Score=36.17 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=33.5
Q ss_pred EEEEEEEeCCCCeeeEEEEeccCCCC--C-CCcEEEECCeeccCCC-CCceEEe
Q 007471 551 RVTLTFSSKGSGLTTSLNLRIPTWTS--S-NGAKATLNGQDLPLPS-PGQNTII 600 (602)
Q Consensus 551 ~V~l~V~~~~~~~~f~L~lRIP~Wa~--~-~~~~i~VNG~~~~~~~-pG~y~~i 600 (602)
.+.|.++.. +...|-+-|| |.|.. . ...+++|||..++++. .-++..+
T Consensus 32 ~I~Lk~~~~-Kk~~~i~Il~-PdWseI~evKPI~m~~Ng~~vdv~lv~~s~~~v 83 (197)
T PHA02811 32 TINIKVNQQ-KKLDFIIILR-PDWTEVRNVKKINMVCNGVVIDTTLIKKSFYEE 83 (197)
T ss_pred EEEEEeCCc-cEEEEEEEec-cchhhhhhccceEEEECCcEeEEEEeeeeeeEE
Confidence 677777654 5667888889 99953 1 2578999999998763 4444443
No 67
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=54.35 E-value=78 Score=35.61 Aligned_cols=130 Identities=14% Similarity=0.133 Sum_probs=69.0
Q ss_pred HhcCChHHHHHHHHHHHHHHHhhhhcCCcceec-CCCchhhhhhccCCcccccchHHHHHHHHHHHHHHcCCHhH----H
Q 007471 194 ASTHNESLKEKMSAVVSALSACQKEIGSGYLSA-FPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEA----L 268 (602)
Q Consensus 194 a~t~D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~-~~~~~~~~~~~~~~~W~pyy~~Hki~aGLl~~y~~tG~~~a----L 268 (602)
+..+|.+ .+++.|+.+.+.|. ++|.+.. .|... ....-.|-|..+.|..- .++|+++||.++ .
T Consensus 163 ~~~~~~~---l~~~~l~~~~~~q~--~~G~~p~~~P~~~------~~~~~~~~w~l~~i~~~-~~~y~~tGD~~~l~~~~ 230 (509)
T PF05592_consen 163 YSFGDAA---LYRKWLRDFADSQR--PDGLLPSVAPSYG------GGGFGIPDWSLAWIIIP-WDYYLYTGDREFLEEYY 230 (509)
T ss_dssp CCT--HH---HHHHHHHHHHGGTT--TSTT-SSBSS---------SSGGGBHHHHHHHHHHH-HHHHHHHT-HHHHHHHH
T ss_pred HhCCcHH---HHHHHHHHHHHhhc--ccCCceEEecccC------CCCCCCccHHHHHHHHH-HHHHHHhCCHHHHHHHH
Confidence 3445554 47778889999999 8997754 23311 00111234455555444 499999999864 4
Q ss_pred HHHHHHHHHHHHHhhhh---hhcchhhhhhh----ccccccc----------chHHHHHHHHHHcCCH----HHHHHHhh
Q 007471 269 RMTTWMVEYFYNRVQNV---IKKYSIERHWQ----TLNEEAG----------GMNDVLYKLFCITQDP----KHLMLAHL 327 (602)
Q Consensus 269 ~ia~r~aD~~~~~~~~~---~~~~~~~~~~~----~l~~E~G----------Gm~~~L~~LY~~TGd~----ryLdlA~~ 327 (602)
+.++++.||+.....+. ...... .-|. ......+ .....+.+|.++.|++ +|.+.|+.
T Consensus 231 ~~~~~~l~~~~~~~~~~~~~~~~~~~-~DW~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~lA~~lg~~~~a~~y~~~a~~ 309 (509)
T PF05592_consen 231 PAMKRYLDYLERRVDDGLDGLPGWGF-GDWLAPGNDGDGPTPGATITNALYYYALRAAAELAEALGKDEDAAEYRARAER 309 (509)
T ss_dssp HHHHHHHHHHHTTB-TSSB-CCSB---S-SS----TT---SCCEEHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccccCCCCCce-eecCCccCcccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57888888887765541 111110 0122 1111111 1124578899999984 78888877
Q ss_pred cc---cccccch
Q 007471 328 FD---KPCFLGL 336 (602)
Q Consensus 328 f~---~~~~~~~ 336 (602)
+. ++.|+++
T Consensus 310 lk~a~~~~~~d~ 321 (509)
T PF05592_consen 310 LKAAINRHFWDP 321 (509)
T ss_dssp HHHHHHHHCEET
T ss_pred HHHHHHHhccCc
Confidence 63 3446554
No 68
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=54.17 E-value=84 Score=35.90 Aligned_cols=195 Identities=16% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHhhhhcCCc----ceecCCCchhhhhhccCCcccccchHHHHHHHHHHHHHHcCCH
Q 007471 190 ALMWASTHNESLKEKMSAVVSALSACQKEIGSG----YLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNA 265 (602)
Q Consensus 190 a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~dG----YL~~~~~~~~~~~~~~~~~W~pyy~~Hki~aGLl~~y~~tG~~ 265 (602)
+++-..++||.+.+|+..+.+.+.+.-. ++| ||+|-..+.-.-...+...--.+|-. |+..+..+|+.
T Consensus 340 ~~LS~ltg~P~~~ekv~~IRk~l~k~ek--P~GLypnYinP~sg~wgq~~tslg~lgDSfyey------llK~wl~s~kT 411 (625)
T KOG2204|consen 340 SYLSKLTGNPTFAEKVVKIRKVLNKSEK--PHGLYPNYINPSSGEWGQHHTSLGALGDSFYEY------LLKAWLQSDKT 411 (625)
T ss_pred HHhhhccCCchHHHHHHHHHHHHHhhcC--CCCCCcccccCCCCchhhHHhHHhhhhhhHHHH------HHHHHhhcCCc
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcchhh-hhhhcccccccchH----------HHHHHHHHHcCC-----HHHHHHHhhcc
Q 007471 266 EALRMTTWMVEYFYNRVQNVIKKYSIE-RHWQTLNEEAGGMN----------DVLYKLFCITQD-----PKHLMLAHLFD 329 (602)
Q Consensus 266 ~aL~ia~r~aD~~~~~~~~~~~~~~~~-~~~~~l~~E~GGm~----------~~L~~LY~~TGd-----~ryLdlA~~f~ 329 (602)
. .-+.+|-+-.+..+...+-.-+.. ..+....-..|+++ .+|.-|-.++++ ++|++++.-..
T Consensus 412 d--~eak~my~~am~Ai~~~li~~S~~s~ltyi~e~~~g~lehKm~hlacf~gGm~algA~~~~~~~~~~~y~el~~eia 489 (625)
T KOG2204|consen 412 D--CEAKGMYEDAMIAIEKYLIFKSDGSGLTYISEWNGGGLEHKMGHLACFAGGMFALGAIKGDTVGSSKHYLELGGEIA 489 (625)
T ss_pred c--hHHHHhHHHHHHHHHhhheeccCCCCeEEEEecCCCchhhhhchhhcccccceeeccccCCCcchhHHHHHHhHHHH
Q ss_pred ccc--ccchhhhcCCCCCCCCcCCCcchh---------------HHHHHHHHHhCCchHHHHHHHHHHHhhccCeeeccC
Q 007471 330 KPC--FLGLLALQADDISGFHSNTHIPIV---------------IGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGG 392 (602)
Q Consensus 330 ~~~--~~~~la~~~d~l~g~hant~iP~~---------------~G~a~~Y~~TGD~~y~~aa~~~w~~v~~~~~y~TGG 392 (602)
..+ .+......-.+-.-......-++. .+.--+|++|||+.|++..-...+.+. ++.-+.+|
T Consensus 490 ~TchesY~rt~T~lgpesf~fn~~~ea~~~r~~EsyyILrpEviEs~fYlwRlT~d~kyR~wgweavqale-k~cr~~~G 568 (625)
T KOG2204|consen 490 TTCHESYTRTTTKLGPESFWFNHGVEAFAVRKVESYYILRPEVIESYFYLWRLTGDQKYRSWGWEAVQALE-KYCRVAKG 568 (625)
T ss_pred HHHHHHHhccccccChhhhcccCccchhhhhcccceeecCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHH-Hhcccccc
Q ss_pred CCC
Q 007471 393 TSV 395 (602)
Q Consensus 393 ~g~ 395 (602)
.++
T Consensus 569 ~~g 571 (625)
T KOG2204|consen 569 YSG 571 (625)
T ss_pred hhh
No 69
>PLN03012 Camelliol C synthase
Probab=52.57 E-value=1.1e+02 Score=36.77 Aligned_cols=165 Identities=16% Similarity=0.161 Sum_probs=83.9
Q ss_pred hhHHHHHHHhhCCC-CCCCCCC-------ccccc------cccCCCCeEecCCCchHHHHHHHHhhhhccC-Ccchhhhh
Q 007471 90 FSWAMLYRKIKNPG-QFKVPER-------SGEFL------KEVSLHDVRLGSDSMHWRAQQTNLEYLLMLD-VDKLVWNF 154 (602)
Q Consensus 90 ~~~~~~~~~~~~~~-~~~~~~~-------~~~~l------~~~~l~~V~l~~~~~~~~~~~~~~~~ll~ld-~drll~nF 154 (602)
=||...||.+..|+ +++-... ....+ ...+. .+.+...-.+++.+.+++|+.+. .|.=...|
T Consensus 459 gdw~~~~r~~~~GgW~Fs~~~~gyp~sD~TAe~Lka~lll~~~~~---~~~~~~~~~~~l~~av~wlL~mQn~dGGwaaf 535 (759)
T PLN03012 459 GDFKNMYRHISKGAWTFSDRDHGWQASDCTAEGFKCCLLFSMIAP---DIVGPKMDPEQLHDAVNILLSLQSKNGGMTAW 535 (759)
T ss_pred ChhhhhCCCCCCCcccccCCCCCCCCCCccHHHHHHHHHHHhccc---ccccccccHHHHHHHHHHHHhccCCCCCEeee
Confidence 48999999987755 4333211 11111 11121 11111233467788888888763 22211112
Q ss_pred HHhc---C---CCCCCCCCCCC--CCCCcCccccchhhHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHhhhhcCCc-
Q 007471 155 RKTA---R---LPAPGEPYGGW--EEPSCELRGHFVGHYLSASALMWASTHN---ESLKEKMSAVVSALSACQKEIGSG- 222 (602)
Q Consensus 155 r~~A---G---l~~~g~~~ggW--e~~d~~lrGh~~g~wLsa~a~~~a~t~D---~~L~~k~~~~Vd~l~~~Q~~~~dG- 222 (602)
-..- . ++ +.++++.+ +.+-+| -++.-|+|+..+-...++ ++....+.+-|+.|.+.|+ +||
T Consensus 536 e~~~~~~~le~ln-p~E~F~d~mid~~y~d----cTa~~l~aL~~f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~--~DGs 608 (759)
T PLN03012 536 EPAGAPEWLELLN-PTEMFADIVIEHEYNE----CTSSAIQALILFKQLYPDHRTEEINAFIKKAAEYIENIQM--LDGS 608 (759)
T ss_pred cCCcchHHHHhcC-hhhhhcCeecCCCccc----HHHHHHHHHHHHhhhCcccchhhhHHHHHHHHHHHHHhcC--CCCC
Confidence 1111 0 11 22333332 111122 267888888876554333 3467899999999999999 776
Q ss_pred ceecCCCchhhhhhccCCcccccchHHHHHHHHHHHHHHcCCHhH-HHHHHHHHHHHHHH
Q 007471 223 YLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEA-LRMTTWMVEYFYNR 281 (602)
Q Consensus 223 YL~~~~~~~~~~~~~~~~~W~pyy~~Hki~aGLl~~y~~tG~~~a-L~ia~r~aD~~~~~ 281 (602)
|.+..... -.|.|.. .+.|| .+.|..-- -+.+.|.++|+.+.
T Consensus 609 W~G~Wgv~------------y~YgT~~-aL~aL----~a~g~~~~~~~~Irrav~fLls~ 651 (759)
T PLN03012 609 WYGNWGIC------------FTYGTWF-ALAGL----AAAGKTFNDCEAIRKGVHFLLAA 651 (759)
T ss_pred Cccccccc------------CCcHHHH-HHHHH----HHhCccCCCcHHHHHHHHHHHHh
Confidence 43322110 1244432 33455 23343211 25677888888754
No 70
>PF03287 Pox_C7_F8A: Poxvirus C7/F8A protein; InterPro: IPR004967 This family includes Poxvirus C7 and F8A proteins.; GO: 0016032 viral reproduction
Probab=49.70 E-value=27 Score=33.05 Aligned_cols=40 Identities=23% Similarity=0.467 Sum_probs=29.4
Q ss_pred EEEEEEEeCCCCeeeEEEEeccCCCC---CCCcEEEECCeeccCC
Q 007471 551 RVTLTFSSKGSGLTTSLNLRIPTWTS---SNGAKATLNGQDLPLP 592 (602)
Q Consensus 551 ~V~l~V~~~~~~~~f~L~lRIP~Wa~---~~~~~i~VNG~~~~~~ 592 (602)
.+.|.++.. +.-.|-+-+| |.|.. -...+++|||..++..
T Consensus 32 ~I~lk~~~~-K~i~f~~Il~-pdwseI~~vKpi~~~~Ng~~id~~ 74 (149)
T PF03287_consen 32 TIKLKSKET-KKINFIFILR-PDWSEIDEVKPIRMKLNGKSIDLE 74 (149)
T ss_pred EEEEEeCCc-cEEEEEEEEc-cChhhcccccceEEEECCeEeeEE
Confidence 566666553 5567888889 99964 1257899999999875
No 71
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=47.55 E-value=32 Score=37.90 Aligned_cols=115 Identities=16% Similarity=0.163 Sum_probs=64.9
Q ss_pred CCcchhHHHHHHHHHhCCchHHHHHHHHHHHhhccCeeeccCCCCCCCCCCCCcccCCCCcccccccchhHHHHH-HHHH
Q 007471 351 THIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKV-SRHL 429 (602)
Q Consensus 351 t~iP~~~G~a~~Y~~TGD~~y~~aa~~~w~~v~~~~~y~TGG~g~~E~f~~~~~L~~~l~~~~~ETCat~~~l~l-~~~L 429 (602)
+.|-++-|..-.|.++||+-|+..|..+=|.+...-.-.++--=++-.......-++ .....-+-+-+..+++ .+.|
T Consensus 176 tTIRvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sps~IPysdVnL~~~~A~~p--~~~~~SStaEvttiQlEfr~L 253 (546)
T KOG2431|consen 176 TTIRVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSPSPIPYSDVNLGTGTAHPP--RWTGDSSTAEVTTIQLEFRYL 253 (546)
T ss_pred hhHHHHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCCCCCCcceeecCCCcccCC--CCCCccchhhheeeeeeHHHH
Confidence 456666788899999999999988887777765422222321111111111000011 0012223333344444 5778
Q ss_pred HccCCcchhHHHHHHHHhhhhcccCCC-CCCCeeEEecCC
Q 007471 430 FRWTKEIAYADYYERSLTNGVLGIQRG-TEPGVMIYLLPL 468 (602)
Q Consensus 430 ~~~tgd~~YaD~~Er~lyN~ila~~~~-~d~g~~~Y~~pl 468 (602)
-++|||++|-+..|++. -+|..--.- .||-.=+|.||-
T Consensus 254 s~ltgd~kY~~~a~kv~-ehih~~~~~~~dGLvPi~in~~ 292 (546)
T KOG2431|consen 254 SRLTGDPKYEELAEKVT-EHIHGLGKKKHDGLVPIFINPN 292 (546)
T ss_pred HhhcCCchHHHHHHHHH-HHHhccCccccCCeeeEEEcCC
Confidence 89999999999999975 344442111 155566788773
No 72
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=45.30 E-value=88 Score=36.69 Aligned_cols=92 Identities=14% Similarity=0.109 Sum_probs=52.4
Q ss_pred hhhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhhcCCcceecCCCch-hhhhhcc--------CCcccccchHHHHH
Q 007471 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQ-FDRLEAL--------IPVWAPYYTIHKIL 252 (602)
Q Consensus 182 ~g~wLsa~a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~~~~-~~~~~~~--------~~~W~pyy~~Hki~ 252 (602)
+..-|.|+..+ ....++...+.+++-|+.|...|. .||..++|.... ..-++.. -|.=.+-+|.+.+
T Consensus 383 Ta~~L~AL~~~-~~~~~~~~~~~i~ra~~wLl~~Qn--~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l- 458 (635)
T TIGR01507 383 TAVVVWALNGL-RLPDERRRRDAMTKAFRWIAGMQS--SNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVL- 458 (635)
T ss_pred HHHHHHHHHHc-CCCccccchHHHHHHHHHHHHhcC--CCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHH-
Confidence 45566666554 222456678899999999999999 999998874211 0001100 0100012344433
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHHHHH
Q 007471 253 AGLLDQYTYADNAEALRMTTWMVEYFYNR 281 (602)
Q Consensus 253 aGLl~~y~~tG~~~aL~ia~r~aD~~~~~ 281 (602)
.++...|....-+.+.|.++|+.+.
T Consensus 459 ----~al~~~g~~~~~~~i~rav~~L~~~ 483 (635)
T TIGR01507 459 ----ECLGSFGYDDAWPVIERAVEYLKRE 483 (635)
T ss_pred ----HHHHHhCCCchhHHHHHHHHHHHHc
Confidence 3333345444456777888888754
No 73
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=44.67 E-value=1.5e+02 Score=31.30 Aligned_cols=45 Identities=20% Similarity=0.216 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHhhhhcCCcceecCC
Q 007471 182 VGHYLSASALMWASTH--NESLKEKMSAVVSALSACQKEIGSGYLSAFP 228 (602)
Q Consensus 182 ~g~wLsa~a~~~a~t~--D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~ 228 (602)
.+.-+.+++.+....+ +....+.++..++.|.++|+ +||-+..+.
T Consensus 94 Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~--~dG~f~~~~ 140 (348)
T cd02889 94 TAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQN--SNGGFAAFE 140 (348)
T ss_pred hHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhcc--CCCCEeeec
Confidence 4666666665554442 46778899999999999999 898876553
No 74
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=42.40 E-value=3e+02 Score=31.67 Aligned_cols=73 Identities=14% Similarity=0.291 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhh--hhhcch--hhhhhhccccccc-chH---HHHHHHHHHcCCHHHH
Q 007471 251 ILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQN--VIKKYS--IERHWQTLNEEAG-GMN---DVLYKLFCITQDPKHL 322 (602)
Q Consensus 251 i~aGLl~~y~~tG~~~aL~ia~r~aD~~~~~~~~--~~~~~~--~~~~~~~l~~E~G-Gm~---~~L~~LY~~TGd~ryL 322 (602)
++-|.+ =++|||++.-++|.++.+-+.+.=.+ +.++.- ....|..-....| |+. +-|++-|=.-||++||
T Consensus 203 lEFg~L--SrLTGD~~fE~vA~~A~~~lW~~RS~igLlGn~idV~tG~W~~~~sGIGAgiDSfyEYllK~yILfgd~e~l 280 (622)
T KOG2429|consen 203 LEFGTL--SRLTGDPKFEKVARRALDALWSLRSGIGLLGNHIDVQTGEWTAPDSGIGAGIDSFYEYLLKGYILFGDPELL 280 (622)
T ss_pred eehhhh--HHhhCCcHHHHHHHHHHHHHHhhcCCCCcccceeeccccceeccccccccchHHHHHHHHHHheecCCHHHH
Confidence 566764 56899999999999999987765332 111110 0122322122223 443 6778888889999999
Q ss_pred HHH
Q 007471 323 MLA 325 (602)
Q Consensus 323 dlA 325 (602)
++=
T Consensus 281 emf 283 (622)
T KOG2429|consen 281 EMF 283 (622)
T ss_pred HHH
Confidence 873
No 75
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=41.92 E-value=19 Score=33.06 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=16.2
Q ss_pred ccchhHHHHHHHHHHHHHHhhhcc
Q 007471 3 KWMCSIGFFKFLLTFLLIVSAAQA 26 (602)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~ 26 (602)
||...+++++++|++|++|.|...
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~r 24 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHNR 24 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHH
Confidence 688777777777777777666443
No 76
>PF02011 Glyco_hydro_48: Glycosyl hydrolase family 48; InterPro: IPR000556 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 48 GH48 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). The largest cellulase gene sequenced to date is one of the cellulases (celA) from the genome of the thermophilic anaerobic bacterium Caldocellum saccharolyticum. The celA gene product is a polypeptide of 1751 amino acids; this has a multidomain structure comprising two catalytic domains and two cellulose-binding domains, linked by Pro-Thr-rich regions. The N-terminal domain encodes an endoglucanase activity on carboxymethylcellulose, consistent with its similarity to several endo-1, 4-beta-D-glucanase sequences. The C-terminal domain shows similarity to a cellulase from Clostridium thermocellum (CelS), which acts synergistically with a second component to hydrolyse crystalline cellulose [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1FAE_A 1FBO_A 1FBW_A 1FCE_A 1F9D_A 1F9O_A 1G9G_A 1G9J_A 2QNO_A 1L1Y_E ....
Probab=38.19 E-value=65 Score=36.75 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhhcCCcceecCCC-----chhhhhhc----cCCcccc--cchHHH----
Q 007471 186 LSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPT-----EQFDRLEA----LIPVWAP--YYTIHK---- 250 (602)
Q Consensus 186 Lsa~a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~~-----~~~~~~~~----~~~~W~p--yy~~Hk---- 250 (602)
++=+|..|+.++|++.++.++++|..+...-.-.+||=+. .|. ...+.|.. ..++|+- -|. +-
T Consensus 413 m~R~AeyYy~tGd~~ak~ildKWv~W~~~~~~~~~dG~f~-IPs~L~WSGqPDtW~~s~t~N~nLHV~V~~yg-~DvGva 490 (619)
T PF02011_consen 413 MERVAEYYYETGDARAKAILDKWVAWALSNTTVNSDGTFE-IPSTLEWSGQPDTWTGSPTGNPNLHVTVTDYG-QDVGVA 490 (619)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHTT-EE-TTS-EE-EEEEEEEES-----TTS----TTEEEEEEEEE---HHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhceeCCCCcEe-cCCCCcccCCCCCccCCCCCCCceEEEEecCC-CchhHH
Confidence 5567888999999999999999999999886654666332 222 12333321 1233320 111 11
Q ss_pred --HHHHHHHHHH-HcCCHhHHHHHHHHHHHHHHHh
Q 007471 251 --ILAGLLDQYT-YADNAEALRMTTWMVEYFYNRV 282 (602)
Q Consensus 251 --i~aGLl~~y~-~tG~~~aL~ia~r~aD~~~~~~ 282 (602)
+-..| .+|. .+|+++++++|+++.|-+.+..
T Consensus 491 ~S~AktL-~yYAA~sg~~~Ak~~Ak~LLD~iW~~~ 524 (619)
T PF02011_consen 491 GSYAKTL-TYYAAKSGDQEAKDTAKQLLDAIWNNY 524 (619)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-HHHHhhcccHHHHHHHHHHHHHHHHhC
Confidence 12233 4554 4699999999999999887643
No 77
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=36.68 E-value=4.4e+02 Score=30.97 Aligned_cols=108 Identities=16% Similarity=0.184 Sum_probs=60.8
Q ss_pred CCCCCCCC-------CcCccccchhhHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHhhhhcCCcceecCCCchhhhh
Q 007471 166 PYGGWEEP-------SCELRGHFVGHYLSASALMWASTH---NESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRL 235 (602)
Q Consensus 166 ~~ggWe~~-------d~~lrGh~~g~wLsa~a~~~a~t~---D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~~~~~~~~ 235 (602)
..|||-|. |+|- ++.-|+|+..+-.... ++.-.+++.+.|+.|+.+|. +||=.++|....-.+|
T Consensus 357 ~~GGW~f~~~~~~~pdsD~----Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~~Qn--~dGGw~~y~~~~~~~~ 430 (634)
T TIGR03463 357 AKGGWCFSDGDHGWPVSDC----TAEALSASLVLEPLGLNPEERVPQARLQDAVEFILSRQN--EDGGFGTYERQRGPRV 430 (634)
T ss_pred CCCccccccCCCCCCcccc----HHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhcC--CCCCEeccCCCCcHHH
Confidence 34778765 3332 5677777665432111 11335789999999999999 8887777753211111
Q ss_pred ----------h-ccCCcccccchHHHHHHHHHHHHHHc-C---CHhHHHHHHHHHHHHHHH
Q 007471 236 ----------E-ALIPVWAPYYTIHKILAGLLDQYTYA-D---NAEALRMTTWMVEYFYNR 281 (602)
Q Consensus 236 ----------~-~~~~~W~pyy~~Hki~aGLl~~y~~t-G---~~~aL~ia~r~aD~~~~~ 281 (602)
. ..-+.=-+.+|.|-|+ +|. .+... . ++++...+.|.++|+.+.
T Consensus 431 l~~~~~~~~f~~~~~d~~~~d~Ta~~l~-aL~-~~~~~~~~~~~~~i~~ai~rav~~L~~~ 489 (634)
T TIGR03463 431 LELLNPSEMFSTCMTDVSYVECTSSCLQ-ALA-AWRKHHPHVPDGRITRAISRGVRFLRSR 489 (634)
T ss_pred HhcCChHHhhcccccCCCcCcHHHHHHH-HHH-HHhhcCcchhhhHHHHHHHHHHHHHHHh
Confidence 0 0011112577787653 453 33321 1 234566778888888764
No 78
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=34.82 E-value=1.2e+02 Score=26.09 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=35.1
Q ss_pred HHHH--HHHHHHhhhhcCCcceecCCCchhhhhhccCCcccccchHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHH
Q 007471 205 MSAV--VSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYN 280 (602)
Q Consensus 205 ~~~~--Vd~l~~~Q~~~~dGYL~~~~~~~~~~~~~~~~~W~pyy~~Hki~aGLl~~y~~tG~~~aL~ia~r~aD~~~~ 280 (602)
.+++ ++.|.++|. +||-++..+... ..+ .+. ...+| ......|.+...+.+.|.++|+.+
T Consensus 42 ~~~~~~~~~L~~~q~--~dGg~~~~~~~~------~~~----~~~---t~~~l-~~l~~~~~~~~~~~~~~a~~~l~~ 103 (113)
T PF13249_consen 42 RDRAAAVEWLLSQQN--PDGGWGSNPDGG------PPD----VYT---TYVAL-AALELLGRPDDEEAVRKAVDWLLS 103 (113)
T ss_dssp HHHHHHHHHHHHHB---TTSGBBSSTTTT-------BS----HHH---HHHHH-HHHHHHT-GGCHTTHCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--CCCCccCCCCCC------Ccc----HHH---HHHHH-HHHHHcCCCcccHHHHHHHHHHHH
Confidence 5555 999999999 998887665310 011 111 22333 334555555557778888888875
No 79
>PHA02919 host-range protein; Provisional
Probab=33.14 E-value=66 Score=30.27 Aligned_cols=47 Identities=13% Similarity=0.253 Sum_probs=29.3
Q ss_pred EEEEEEEeCCCCeeeEEEEeccCCCC--C-CCcEEEECCeeccCCC-CCceEE
Q 007471 551 RVTLTFSSKGSGLTTSLNLRIPTWTS--S-NGAKATLNGQDLPLPS-PGQNTI 599 (602)
Q Consensus 551 ~V~l~V~~~~~~~~f~L~lRIP~Wa~--~-~~~~i~VNG~~~~~~~-pG~y~~ 599 (602)
.+.|.++.. +.-.|-+-|| |.|.+ . ....+.+||..++++. ..++..
T Consensus 31 ~i~lk~~~~-K~~~fi~vLe-PdWseId~vKpi~m~~Ng~~v~v~~v~~s~~~ 81 (150)
T PHA02919 31 KLKIISNDY-KKLKFRFIIR-PDWSEIDEVKGLTVFANNYAVKVNKVDDTFYY 81 (150)
T ss_pred EEEEEECCc-eEEEEEEEEc-cChhhhhcccceEEEECCEEEEEEEeccceEE
Confidence 566666543 3444555555 99954 1 2578999999998763 444443
No 80
>KOG0602 consensus Neutral trehalase [Carbohydrate transport and metabolism]
Probab=31.47 E-value=1e+02 Score=35.70 Aligned_cols=106 Identities=22% Similarity=0.335 Sum_probs=68.8
Q ss_pred CCCCCCCcCccccchhhHHHHHHHHHHhcCChHHHH-HHHHHHHHHHHhhhhcCCcceecCCCc---hhhhhhccCCccc
Q 007471 168 GGWEEPSCELRGHFVGHYLSASALMWASTHNESLKE-KMSAVVSALSACQKEIGSGYLSAFPTE---QFDRLEALIPVWA 243 (602)
Q Consensus 168 ggWe~~d~~lrGh~~g~wLsa~a~~~a~t~D~~L~~-k~~~~Vd~l~~~Q~~~~dGYL~~~~~~---~~~~~~~~~~~W~ 243 (602)
|-|++=|+.+-.|..+.+.+.++.+++..-++.=.+ .++.+++.+.+.-. ..|-+..|.. .-+.| +..+.|+
T Consensus 407 g~w~DYd~~~~~~~~~~~~sn~~Pl~~~~~~~~~~~~~~~~v~~~le~~g~---~~~p~giP~Sl~~s~eQW-D~Pn~Wa 482 (600)
T KOG0602|consen 407 GAWFDYDLELKKHNTYFYASNFAPLWAGCYPAPDDDKSVDKVLDYLEKSGA---LTFPGGIPTSLSNSGEQW-DFPNGWA 482 (600)
T ss_pred CcceeccccccccCCCcCchhhhhhhccCCCcccccchHHHHHHHHHHcCC---cCCCCCCcccCCCchhhc-cCCCCCC
Confidence 568888888999999999999999998765533222 45555665553321 1222222321 11122 2457899
Q ss_pred ccchHHHHHHHHHHHHHHcCCHhHHHHHHHHHH-HHHHHhh
Q 007471 244 PYYTIHKILAGLLDQYTYADNAEALRMTTWMVE-YFYNRVQ 283 (602)
Q Consensus 244 pyy~~Hki~aGLl~~y~~tG~~~aL~ia~r~aD-~~~~~~~ 283 (602)
|- .|++..||. .+|++.+.++|.++|. |+...+.
T Consensus 483 P~--q~m~~~gl~----~~~~~~~~~~A~kla~~wl~~~~~ 517 (600)
T KOG0602|consen 483 PN--QHMAIEGLR----RAGNQELQEVALKLAQRWLETNFA 517 (600)
T ss_pred cc--eehhhhhhh----hcCCHHHHHHHHHHHHHHHHHhhh
Confidence 94 677777764 5799999999999994 5555443
No 81
>COG1554 ATH1 Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]
Probab=30.76 E-value=2e+02 Score=34.40 Aligned_cols=109 Identities=17% Similarity=0.221 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCcCccccchhhHHHHHHHHHHhcCChH-HHHHHHHHHHHHHHhhhh-cCCcceecCCC-chhhhhhccCC
Q 007471 164 GEPYGGWEEPSCELRGHFVGHYLSASALMWASTHNES-LKEKMSAVVSALSACQKE-IGSGYLSAFPT-EQFDRLEALIP 240 (602)
Q Consensus 164 g~~~ggWe~~d~~lrGh~~g~wLsa~a~~~a~t~D~~-L~~k~~~~Vd~l~~~Q~~-~~dGYL~~~~~-~~~~~~~~~~~ 240 (602)
|+.|+|--|.|+++ .+.=+....+|+ -+..+.+=...|-.+|++ ...||.|+-+. +.+..-....+
T Consensus 345 GegY~GhvfWDTEi-----------f~lP~l~~t~P~vArnLL~YR~~~L~~Ak~nA~~~G~~GAlyPW~S~~~G~E~t~ 413 (772)
T COG1554 345 GEGYGGHVFWDTEI-----------FVLPFLLFTDPEVARNLLLYRYNTLPGAKENAKKYGLKGALYPWESATDGDECTP 413 (772)
T ss_pred ccccCCeeeecchH-----------HhhhhhhccChHHHHHHHHHHHhcCHHHHHHHHHcCCCcccceeeecCCCCccCC
Confidence 56788877777652 221133344554 466667777777777753 37899998642 11110001112
Q ss_pred ccc---------ccc---hHHH---HHHHHHHHHHHcCCHhHH-----HHHHHHHHHHHHHhh
Q 007471 241 VWA---------PYY---TIHK---ILAGLLDQYTYADNAEAL-----RMTTWMVEYFYNRVQ 283 (602)
Q Consensus 241 ~W~---------pyy---~~Hk---i~aGLl~~y~~tG~~~aL-----~ia~r~aD~~~~~~~ 283 (602)
-|+ +++ -.|. |-.++-.|+++|||++.+ ++....|.+..++..
T Consensus 414 ~w~~~~~~~~~~~~~~~~E~Hin~dIAyAv~~Y~q~TgD~~yl~~~G~evl~etArFW~srv~ 476 (772)
T COG1554 414 EWEATFERTGWRVASSDREIHINADIAYAVWNYWQVTGDDSYLADCGLEVLLETARFWASRVH 476 (772)
T ss_pred cccccccccccccCccccceehhhHHHHHHHHHHhhcCcHHHHHhcCHHHHHHHHHHHHHHhe
Confidence 222 221 1332 333455788899999865 467777777666643
No 82
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=29.70 E-value=19 Score=31.21 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhhhcCCcceecCCCchhhhhhccCCcccccchHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHh
Q 007471 205 MSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRV 282 (602)
Q Consensus 205 ~~~~Vd~l~~~Q~~~~dGYL~~~~~~~~~~~~~~~~~W~pyy~~Hki~aGLl~~y~~tG~~~aL~ia~r~aD~~~~~~ 282 (602)
|++.++.|.+.|. +||.-+.. +. .+. + +.++++.++...|+.+..+.+.|.++|+.++-
T Consensus 1 i~~~~~~l~~~Q~--~dG~W~~~-------~~--~~~---~-----~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q 59 (109)
T PF13243_consen 1 IKRAAEWLLSQQN--PDGSWGYN-------WG--SDV---F-----VTAALILALAAAGDAAVDEAIKKAIDWLLSHQ 59 (109)
T ss_dssp -----------------------------------------------------------TS-SSBSSHHHHHHHHH--
T ss_pred Ccccccccccccc--cccccccc-------cc--ccc---c-----ccccccccccccCCCCcHHHHHHHHHHHHHhc
Confidence 4678999999999 99876321 10 010 1 12233345556678788888899999998763
No 83
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=28.90 E-value=56 Score=29.02 Aligned_cols=63 Identities=29% Similarity=0.521 Sum_probs=42.6
Q ss_pred chhhHhhhcccCchhhHHhhhccCCCCCCCChhhhhhcCchhhh---hhhhhhcchhHHHHHHHhhC
Q 007471 38 SHTFRSNLLSSKNESYIKQIHSHNDHLTPSDDSAWLSLMPRKIL---REEEQDELFSWAMLYRKIKN 101 (602)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 101 (602)
-|-.|-.|..- ++.=+..|-...+||.+.++..|..++=|.+- ......+.-+|-.+|.+++.
T Consensus 9 y~ll~piL~~~-~~~QL~~iE~~np~l~~~tdeLW~~~i~rdFp~~~~~~~~~~~~~Wr~~Y~~~~~ 74 (109)
T PF06881_consen 9 YHLLRPILEKC-SPEQLRRIEDNNPHLIEDTDELWKKLIKRDFPEESKRQKPKEPESWRELYEKLKK 74 (109)
T ss_pred HHHHHHHHccC-CHHHHHHHHHhCCCcchhhHHHHHHHHHhHCcChhhcccccccchHHHHHHHHHH
Confidence 34555556655 55556777778899999999999998755542 22222233589999988765
No 84
>PHA02854 putative host range protein; Provisional
Probab=26.16 E-value=1e+02 Score=29.96 Aligned_cols=48 Identities=13% Similarity=0.298 Sum_probs=30.6
Q ss_pred EEEEEEEeCCCCeeeEEEEeccCCCC--C-CCcEEEECCeeccCCC-CCceEEe
Q 007471 551 RVTLTFSSKGSGLTTSLNLRIPTWTS--S-NGAKATLNGQDLPLPS-PGQNTII 600 (602)
Q Consensus 551 ~V~l~V~~~~~~~~f~L~lRIP~Wa~--~-~~~~i~VNG~~~~~~~-pG~y~~i 600 (602)
.+.|.++.. +...|-+-|| |.|.. . ...++++||..++++. .-++..+
T Consensus 32 ~I~Lk~~~~-K~~~~i~Il~-pdwseI~evKPi~m~~Ng~~vdv~lv~~s~~~~ 83 (178)
T PHA02854 32 FINLKVKEE-KKFNIIFVLK-PDWSEIDSVKPIRMEVNNNSVDVEKVSESLYEV 83 (178)
T ss_pred EEEEEeCCc-cEEEEEEEEe-cChhhhhcccceEEEECCeEeEEEEeeeeeEEE
Confidence 566666543 4455666666 59953 1 2578999999998763 4454444
No 85
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=25.21 E-value=3.9e+02 Score=31.29 Aligned_cols=80 Identities=14% Similarity=0.202 Sum_probs=46.8
Q ss_pred CChHHHHHHHHHHHHHHHhhhhcCCcceecCCCch----hhhhhc---cCCc-cc---ccchHHHHHHHHHHHHHHcCCH
Q 007471 197 HNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQ----FDRLEA---LIPV-WA---PYYTIHKILAGLLDQYTYADNA 265 (602)
Q Consensus 197 ~D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~~~~----~~~~~~---~~~~-W~---pyy~~Hki~aGLl~~y~~tG~~ 265 (602)
+++...+.+++.++.|.+.|. +||-.++|.... .+.+.. -.+. .. +-+|++-| .+|. .+.. ..+
T Consensus 382 ~~~~~~~~l~~a~~~Ll~~Qn--~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l-~aL~-~~~~-r~~ 456 (621)
T TIGR01787 382 DEHVKRDRLRDAVNWILGMQS--SNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVI-QALG-AFGH-RAD 456 (621)
T ss_pred cccccHHHHHHHHHHHHHHcC--CCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHH-HHHH-HhcC-ccH
Confidence 456677889999999999999 999888774211 011100 0111 11 23566644 3442 2211 123
Q ss_pred hHHHHHHHHHHHHHHH
Q 007471 266 EALRMTTWMVEYFYNR 281 (602)
Q Consensus 266 ~aL~ia~r~aD~~~~~ 281 (602)
...+.+.|.++|+.+.
T Consensus 457 ~~~~~i~rAl~~L~~~ 472 (621)
T TIGR01787 457 EIRNVLERALEYLRRE 472 (621)
T ss_pred hHHHHHHHHHHHHHHh
Confidence 4567888999998754
No 86
>PF05426 Alginate_lyase: Alginate lyase; InterPro: IPR008397 Alginate is a family of 1-4-linked copolymers of beta-D-mannuronic acid (M) and alpha-L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyse the depolymerisation of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end []. Two subfamilies of alginate lyase exist: the poly(beta-D-mannuronate) lyase, 4.2.2.3 from EC, and the poly(alpha-L-guluronate) lyase, 4.2.2.11 from EC. This entry represents a domain found in the former.; GO: 0045135 poly(beta-D-mannuronate) lyase activity, 0042122 alginic acid catabolic process, 0042597 periplasmic space; PDB: 4E1Y_A 4E25_A 4E23_B 1QAZ_A 1HV6_A 3NFV_A 3NNB_A.
Probab=24.91 E-value=1.3e+02 Score=30.60 Aligned_cols=25 Identities=20% Similarity=0.009 Sum_probs=18.4
Q ss_pred HHHHHHHHHcCCHHHHHHHhhcccc
Q 007471 307 DVLYKLFCITQDPKHLMLAHLFDKP 331 (602)
Q Consensus 307 ~~L~~LY~~TGd~ryLdlA~~f~~~ 331 (602)
..|..+|.+|||++|.+-|..+...
T Consensus 63 ~~lAlay~~Tgd~~YA~~a~~iL~~ 87 (272)
T PF05426_consen 63 YALALAYYLTGDEKYADKAAEILNA 87 (272)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4677889999999999998876443
No 87
>TIGR03515 GldC gliding motility-associated protein GldC. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldC do not abolish the gliding phenotype but do impair it. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=24.66 E-value=1.6e+02 Score=26.33 Aligned_cols=36 Identities=8% Similarity=0.180 Sum_probs=29.1
Q ss_pred HHHHHHHHHHH-HHHcCCHhHHHHHHHHHHHHHHHhh
Q 007471 248 IHKILAGLLDQ-YTYADNAEALRMTTWMVEYFYNRVQ 283 (602)
Q Consensus 248 ~Hki~aGLl~~-y~~tG~~~aL~ia~r~aD~~~~~~~ 283 (602)
.|-++.|+.|- .++||+++.-+-+..++||+.+++.
T Consensus 69 f~qtl~~maDT~~rAT~d~kma~~m~dfcd~faekl~ 105 (108)
T TIGR03515 69 FIETLGGMADTFLNATGDEKMAEDIKDLCDRLAQKLK 105 (108)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 46777887754 5699999999999999999987653
No 88
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=24.46 E-value=3.3e+02 Score=32.13 Aligned_cols=126 Identities=13% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhhcCCcc-eecCCCchhhhhhccC-CcccccchHHHHHHHHHHHHHHc
Q 007471 185 YLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGY-LSAFPTEQFDRLEALI-PVWAPYYTIHKILAGLLDQYTYA 262 (602)
Q Consensus 185 wLsa~a~~~a~t~D~~L~~k~~~~Vd~l~~~Q~~~~dGY-L~~~~~~~~~~~~~~~-~~W~pyy~~Hki~aGLl~~y~~t 262 (602)
|+.=++++....-..=..+.+.++.+.|.+.|. ++|+ +..|.-.--..|...+ |. ++..|+++. .+++ .
T Consensus 296 W~RD~a~~a~AL~~~G~~~~a~~~~~~l~~~~~--~~G~~lq~y~vdG~~~~~~iQlD~-----~g~~i~~~~-~l~~-~ 366 (648)
T TIGR01535 296 WPRDLYQVANAFLAAGDVDSALRSLDYLAKVQQ--DNGMFPQNSWVDGKPYWTGIQLDE-----TAFPILLAY-RLHR-Y 366 (648)
T ss_pred ehhhHHHHHHHHHHCCCHHHHHHHHHHHHHHhc--cCCCcCceeccCCCCCCCCccccH-----HHHHHHHHH-HHHH-c
Q ss_pred CCHhHHHHHHHHHHHHHHHhhhhhhcchhhhhhhcccccccchH-----------HHHHHHHHHcCCHH----HHHHHhh
Q 007471 263 DNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMN-----------DVLYKLFCITQDPK----HLMLAHL 327 (602)
Q Consensus 263 G~~~aL~ia~r~aD~~~~~~~~~~~~~~~~~~~~~l~~E~GGm~-----------~~L~~LY~~TGd~r----yLdlA~~ 327 (602)
|.....++++++|||+.+.-.. +....| +|.+|.. ....++.+..|++. |++.|..
T Consensus 367 ~~~~~~~~vk~aadfl~~~~p~-----p~~d~W----Eer~g~~~~T~a~v~aaL~~Aa~iA~~~g~~~~a~~w~~~Ad~ 437 (648)
T TIGR01535 367 DHAFYDKMLKPAADFIVKNGPK-----TGQERW----EEIGGYSPSTLAAEIAGLTAAADIAEQNGDAGSAQKYRETADN 437 (648)
T ss_pred CcHHHHHHHHHHHHHHHHcCCC-----CCCCcc----cccCCcCchhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q ss_pred c
Q 007471 328 F 328 (602)
Q Consensus 328 f 328 (602)
+
T Consensus 438 i 438 (648)
T TIGR01535 438 W 438 (648)
T ss_pred H
No 89
>PRK13807 maltose phosphorylase; Provisional
Probab=24.44 E-value=7.3e+02 Score=29.89 Aligned_cols=145 Identities=18% Similarity=0.262 Sum_probs=76.8
Q ss_pred CeEecCCCchHHHHHHHHhhhhcc-CC-cchhhhhHHhcCCCCCCCCCCCCCCCCcCccccchhhHHHHHHHHHHhcCCh
Q 007471 122 DVRLGSDSMHWRAQQTNLEYLLML-DV-DKLVWNFRKTARLPAPGEPYGGWEEPSCELRGHFVGHYLSASALMWASTHNE 199 (602)
Q Consensus 122 ~V~l~~~~~~~~~~~~~~~~ll~l-d~-drll~nFr~~AGl~~~g~~~ggWe~~d~~lrGh~~g~wLsa~a~~~a~t~D~ 199 (602)
+|++..+....++++-++=+|+.. .+ +.-+ +. -+.||. |+.|.|=.|.|+++ |+= +.+....+|
T Consensus 307 di~I~gd~~~q~alr~~~fhL~~s~~~~~~~~-~i-~a~GLs--ge~Y~Gh~FWDtE~-------f~l---P~~~~~~~P 372 (756)
T PRK13807 307 DVVIEGDDAAQQGIRFNIFQLFSTYYGEDARL-NI-GPKGFT--GEKYGGATYWDTEA-------YCV---PFYLATADP 372 (756)
T ss_pred CeEEcCCHHHHHHHHHHHHHHHhccCCCCCCC-Cc-CCCCCC--cCCcCCeeeeccch-------hhh---hhhhhccCH
Confidence 777865444444555555556533 21 1111 11 134554 55677767777662 221 222222355
Q ss_pred HH-HHHHHHHHHHHHHhhh-hcCCcceecCCCchhhhhh--ccCCcccccch-HH---HHHHHHHHHHHHcCCHhHH---
Q 007471 200 SL-KEKMSAVVSALSACQK-EIGSGYLSAFPTEQFDRLE--ALIPVWAPYYT-IH---KILAGLLDQYTYADNAEAL--- 268 (602)
Q Consensus 200 ~L-~~k~~~~Vd~l~~~Q~-~~~dGYL~~~~~~~~~~~~--~~~~~W~pyy~-~H---ki~aGLl~~y~~tG~~~aL--- 268 (602)
++ ++.+.+=.+.|..+.+ +...||-|+.+. |+... .....|.+-.. .| -|--++..||.+|||...|
T Consensus 373 e~Ar~lL~YR~~~L~~Ar~~A~~~g~~GA~yP--W~s~~G~E~~~~w~~~~~e~HI~adIaya~~~Y~~~TgD~~fl~~~ 450 (756)
T PRK13807 373 EVTRNLLKYRYNQLPGAKENAKKQGLKGALYP--MVTFNGIECHNEWEITFEEIHRNGAIAYAIYNYTNYTGDESYLKEE 450 (756)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHcCCCccccc--eEcCCCCcCCCCcCCCceeEechHHHHHHHHHHHHHhCCHHHHHhc
Confidence 54 4445666666666544 225688887643 11111 11223432111 23 2445566899999999865
Q ss_pred --HHHHHHHHHHHHHh
Q 007471 269 --RMTTWMVEYFYNRV 282 (602)
Q Consensus 269 --~ia~r~aD~~~~~~ 282 (602)
+++...|.+..++.
T Consensus 451 G~e~l~etArfw~s~~ 466 (756)
T PRK13807 451 GLEVLVEIARFWADRV 466 (756)
T ss_pred CHHHHHHHHHHHHHhe
Confidence 68888888888775
No 90
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=24.26 E-value=4.6e+02 Score=22.81 Aligned_cols=20 Identities=10% Similarity=0.233 Sum_probs=16.2
Q ss_pred cceeeeecCCCCcEEEEEecCcE
Q 007471 504 DSIYFEEEGKYPGVYIIQYISSR 526 (602)
Q Consensus 504 ~~iY~~~~~~~~~L~VnLY~pS~ 526 (602)
.+-|+++.+ .|+|.+++|+.
T Consensus 2 ~~~W~Qt~~---~V~i~i~~~~~ 21 (108)
T cd06465 2 PVLWAQRSD---VVYLTIELPDA 21 (108)
T ss_pred ceeeeECCC---EEEEEEEeCCC
Confidence 467888875 79999999975
No 91
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=22.41 E-value=2.4e+02 Score=33.02 Aligned_cols=56 Identities=21% Similarity=0.286 Sum_probs=39.1
Q ss_pred CCCCCCC-------CcCccccchhhHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHhhhhcCCcceecCC
Q 007471 167 YGGWEEP-------SCELRGHFVGHYLSASALMWASTH--NESLKEKMSAVVSALSACQKEIGSGYLSAFP 228 (602)
Q Consensus 167 ~ggWe~~-------d~~lrGh~~g~wLsa~a~~~a~t~--D~~L~~k~~~~Vd~l~~~Q~~~~dGYL~~~~ 228 (602)
.|||-|. |+|. +..-|.|+..+....+ ++...+.+++.|+.|..+|. +||-+.+|.
T Consensus 359 ~GGW~fs~~~~~~pd~d~----Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn--~dGgf~~y~ 423 (634)
T cd02892 359 KGGWAFSTANQGYPDSDD----TAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQN--SNGGFAAFE 423 (634)
T ss_pred CCCCCCCCCCCCCCCcCc----hHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccC--CCCCEeeec
Confidence 4788764 3332 5666667665544332 45677899999999999999 898877663
No 92
>PF12060 DUF3541: Domain of unknown function (DUF3541); InterPro: IPR021928 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 230 amino acids in length.
Probab=20.84 E-value=90 Score=31.36 Aligned_cols=28 Identities=25% Similarity=0.105 Sum_probs=20.6
Q ss_pred hHHH--HHHHHHhCCchHHHHHHHHHHHhh
Q 007471 356 VIGS--QMRYEVTGDQLHKTISMFFMDIVN 383 (602)
Q Consensus 356 ~~G~--a~~Y~~TGD~~y~~aa~~~w~~v~ 383 (602)
..|| .++|+.|||++|..++-.-...|.
T Consensus 28 ~~GHyglRmYRqT~d~kYaaa~~~D~~rVa 57 (227)
T PF12060_consen 28 KQGHYGLRMYRQTGDPKYAAAVWSDMARVA 57 (227)
T ss_pred hcchHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 4776 788999999999877654444444
No 93
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=20.35 E-value=4.2e+02 Score=20.94 Aligned_cols=61 Identities=13% Similarity=0.077 Sum_probs=31.8
Q ss_pred cEEEEEecCcEEEeeecceEEEEEeCCCCCCCCCeEEEEEEEeCCCCeeeEEEEeccCCCCCCCcEEEECCeec
Q 007471 516 GVYIIQYISSRLDWKSGQIVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQDL 589 (602)
Q Consensus 516 ~L~VnLY~pS~~~~~~~gv~i~q~T~yP~~~~g~~~V~l~V~~~~~~~~f~L~lRIP~Wa~~~~~~i~VNG~~~ 589 (602)
.|+|..++|... ...+.|..+.+ .++|++... ....+.+.+.+|.=...+..+.++.+..+
T Consensus 7 ~v~i~v~~~~~~---~~~~~v~~~~~---------~l~i~~~~~-~~~~~~~~~~L~~~I~~~~s~~~~~~~~l 67 (84)
T cd06463 7 EVTITIPLKDVT---KKDVKVEFTPK---------SLTVSVKGG-GGKEYLLEGELFGPIDPEESKWTVEDRKI 67 (84)
T ss_pred EEEEEEEcCCCC---ccceEEEEecC---------EEEEEeeCC-CCCceEEeeEccCccchhhcEEEEeCCEE
Confidence 799999999764 23344443322 466665431 13455666655544432234555544333
Done!