Query 007472
Match_columns 602
No_of_seqs 248 out of 1414
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 00:04:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007472.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007472hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05505 Bromo_WSTF_like Bromod 99.9 6E-25 1.3E-29 193.5 9.5 93 35-127 4-96 (97)
2 cd05497 Bromo_Brdt_I_like Brom 99.9 8.7E-25 1.9E-29 195.5 10.6 94 38-131 12-107 (107)
3 cd05496 Bromo_WDR9_II Bromodom 99.9 1.9E-24 4.2E-29 197.0 10.8 100 35-134 9-109 (119)
4 cd05495 Bromo_cbp_like Bromodo 99.9 2.5E-24 5.5E-29 192.7 11.2 97 36-132 8-107 (108)
5 cd05503 Bromo_BAZ2A_B_like Bro 99.9 1.8E-24 3.9E-29 189.8 9.5 95 34-128 3-97 (97)
6 cd05507 Bromo_brd8_like Bromod 99.9 2.7E-24 5.8E-29 191.2 10.5 96 36-131 8-103 (104)
7 cd05504 Bromo_Acf1_like Bromod 99.9 3.3E-24 7.1E-29 194.0 10.3 99 34-132 15-113 (115)
8 KOG1474 Transcription initiati 99.9 4.9E-24 1.1E-28 240.0 11.0 107 34-140 225-333 (640)
9 cd05509 Bromo_gcn5_like Bromod 99.9 9.9E-24 2.2E-28 185.5 10.5 97 35-131 5-101 (101)
10 cd05508 Bromo_RACK7 Bromodomai 99.9 7.8E-24 1.7E-28 187.3 9.7 89 38-127 10-98 (99)
11 cd05510 Bromo_SPT7_like Bromod 99.9 1.1E-23 2.4E-28 190.1 10.7 98 35-132 11-110 (112)
12 cd05513 Bromo_brd7_like Bromod 99.9 1.1E-23 2.3E-28 186.1 9.6 92 36-127 6-97 (98)
13 cd05502 Bromo_tif1_like Bromod 99.9 2.6E-23 5.6E-28 185.9 11.2 97 35-132 8-107 (109)
14 cd05506 Bromo_plant1 Bromodoma 99.9 2.3E-23 4.9E-28 182.4 10.2 94 35-128 4-99 (99)
15 cd05499 Bromo_BDF1_2_II Bromod 99.9 2E-23 4.3E-28 184.3 9.6 95 34-128 3-102 (102)
16 cd05498 Bromo_Brdt_II_like Bro 99.9 3.9E-23 8.4E-28 182.0 10.2 94 35-128 4-102 (102)
17 cd05512 Bromo_brd1_like Bromod 99.9 2.9E-23 6.2E-28 183.1 8.7 89 37-125 7-95 (98)
18 cd05500 Bromo_BDF1_2_I Bromodo 99.9 4.6E-23 1E-27 182.5 9.9 94 34-127 7-102 (103)
19 cd05511 Bromo_TFIID Bromodomai 99.9 5.4E-23 1.2E-27 185.3 9.9 98 37-134 6-103 (112)
20 cd05501 Bromo_SP100C_like Brom 99.9 1.8E-22 3.9E-27 179.8 11.1 95 35-132 6-100 (102)
21 cd05528 Bromo_AAA Bromodomain; 99.9 1.4E-22 3E-27 182.9 10.6 97 36-132 8-108 (112)
22 cd05516 Bromo_SNF2L2 Bromodoma 99.9 2.5E-22 5.5E-27 179.5 10.0 94 38-131 8-107 (107)
23 cd05524 Bromo_polybromo_I Brom 99.9 6.3E-22 1.4E-26 178.7 10.1 100 35-134 6-111 (113)
24 cd05529 Bromo_WDR9_I_like Brom 99.9 1.4E-21 3.1E-26 179.9 11.0 94 37-130 30-127 (128)
25 cd05519 Bromo_SNF2 Bromodomain 99.9 1.1E-21 2.4E-26 173.8 9.5 93 36-128 5-103 (103)
26 smart00297 BROMO bromo domain. 99.9 2.9E-21 6.2E-26 169.0 10.3 95 36-130 12-106 (107)
27 cd05520 Bromo_polybromo_III Br 99.9 2.1E-21 4.4E-26 172.8 9.4 82 46-127 21-102 (103)
28 KOG0955 PHD finger protein BR1 99.8 2.6E-21 5.5E-26 224.6 12.1 312 7-335 537-868 (1051)
29 cd05515 Bromo_polybromo_V Brom 99.8 3.9E-21 8.4E-26 171.2 9.7 85 45-129 20-104 (105)
30 cd05518 Bromo_polybromo_IV Bro 99.8 8E-21 1.7E-25 169.1 10.2 83 44-126 19-101 (103)
31 cd05517 Bromo_polybromo_II Bro 99.8 9.4E-21 2E-25 168.5 9.5 81 46-126 21-101 (103)
32 cd05525 Bromo_ASH1 Bromodomain 99.8 1.1E-20 2.5E-25 169.0 10.0 82 46-127 23-104 (106)
33 PF00439 Bromodomain: Bromodom 99.8 9.6E-21 2.1E-25 159.0 8.7 84 36-119 1-84 (84)
34 cd04369 Bromodomain Bromodomai 99.8 2.3E-20 5E-25 157.6 8.9 93 35-127 4-98 (99)
35 cd05522 Bromo_Rsc1_2_II Bromod 99.8 5.2E-20 1.1E-24 163.8 9.4 82 46-127 22-103 (104)
36 cd05492 Bromo_ZMYND11 Bromodom 99.8 3.1E-19 6.8E-24 160.8 10.8 94 39-132 8-107 (109)
37 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 3.5E-19 7.6E-24 159.5 9.8 82 46-129 22-103 (106)
38 COG5076 Transcription factor i 99.6 2.8E-16 6E-21 166.9 8.0 91 45-135 162-252 (371)
39 cd05526 Bromo_polybromo_VI Bro 99.6 8.4E-16 1.8E-20 138.9 8.4 84 47-132 25-108 (110)
40 KOG1245 Chromatin remodeling c 99.6 6E-16 1.3E-20 185.8 7.5 95 36-131 1306-1400(1404)
41 KOG1472 Histone acetyltransfer 99.4 1.9E-13 4.1E-18 154.5 5.5 96 37-132 612-707 (720)
42 cd05494 Bromodomain_1 Bromodom 99.1 1.9E-11 4.2E-16 111.0 2.4 75 35-109 7-90 (114)
43 cd05491 Bromo_TBP7_like Bromod 98.9 1E-09 2.2E-14 100.6 4.4 43 69-111 62-104 (119)
44 KOG0008 Transcription initiati 98.8 2.3E-09 5E-14 126.4 5.0 93 38-130 1389-1481(1563)
45 KOG0386 Chromatin remodeling c 98.6 3.1E-08 6.7E-13 115.0 6.5 89 45-133 1044-1132(1157)
46 KOG1827 Chromatin remodeling c 98.6 6.9E-08 1.5E-12 108.7 8.1 81 49-129 76-156 (629)
47 KOG1472 Histone acetyltransfer 98.5 1.2E-07 2.6E-12 108.2 4.8 73 45-117 300-372 (720)
48 KOG1828 IRF-2-binding protein 98.5 2.1E-08 4.5E-13 106.8 -1.4 94 35-128 23-116 (418)
49 KOG0008 Transcription initiati 98.4 2.6E-07 5.7E-12 109.6 6.9 87 38-124 1268-1354(1563)
50 PF12024 DUF3512: Domain of un 98.4 1.1E-07 2.4E-12 96.7 2.5 126 189-318 43-184 (245)
51 KOG1474 Transcription initiati 98.2 3.5E-07 7.6E-12 104.4 1.1 95 44-138 5-101 (640)
52 KOG1828 IRF-2-binding protein 98.2 1E-06 2.3E-11 94.1 3.0 82 40-122 217-298 (418)
53 COG5076 Transcription factor i 96.6 0.00083 1.8E-08 72.2 1.4 90 42-131 274-363 (371)
54 cd05493 Bromo_ALL-1 Bromodomai 95.9 0.015 3.2E-07 54.9 5.7 64 70-133 58-121 (131)
55 KOG0644 Uncharacterized conser 91.0 0.18 4E-06 59.4 3.5 63 65-127 1047-1109(1113)
56 KOG0732 AAA+-type ATPase conta 84.3 0.71 1.5E-05 56.2 3.0 63 48-110 532-601 (1080)
57 KOG1827 Chromatin remodeling c 66.3 1 2.3E-05 52.1 -2.1 74 50-123 214-287 (629)
58 KOG0644 Uncharacterized conser 57.0 2.9 6.3E-05 49.9 -0.7 73 50-123 84-186 (1113)
59 TIGR02606 antidote_CC2985 puta 33.7 65 0.0014 27.2 4.1 27 75-101 12-38 (69)
60 PF14372 DUF4413: Domain of un 32.0 1.4E+02 0.003 26.6 6.1 48 84-131 4-51 (101)
61 PF07882 Fucose_iso_N2: L-fuco 29.0 21 0.00044 35.8 0.3 55 56-111 18-72 (181)
62 PRK10991 fucI L-fucose isomera 28.6 71 0.0015 37.4 4.5 68 37-105 164-238 (588)
63 KOG4672 Uncharacterized conser 21.8 4.3E+02 0.0094 30.1 8.7 95 11-127 24-118 (487)
64 PF03693 RHH_2: Uncharacterise 20.3 1.3E+02 0.0027 26.3 3.5 27 75-101 15-41 (80)
No 1
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=6e-25 Score=193.54 Aligned_cols=93 Identities=26% Similarity=0.357 Sum_probs=90.2
Q ss_pred ChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHH
Q 007472 35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF 114 (602)
Q Consensus 35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vy 114 (602)
.|.++|.+|++++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||+.||++++.++
T Consensus 4 ~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~ 83 (97)
T cd05505 4 KCEEILSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGSYVL 83 (97)
T ss_pred HHHHHHHHHHhCCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 57799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 007472 115 RQARSIHELAKKN 127 (602)
Q Consensus 115 k~Ak~L~e~fek~ 127 (602)
.+|.+|++.|...
T Consensus 84 ~~a~~le~~f~~~ 96 (97)
T cd05505 84 SCMRKTEQCCVNL 96 (97)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999765
No 2
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=8.7e-25 Score=195.54 Aligned_cols=94 Identities=23% Similarity=0.383 Sum_probs=90.7
Q ss_pred HHHHHHHhCCCCCCCcCCCCCC--CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHH
Q 007472 38 QRLYQIKSYCCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115 (602)
Q Consensus 38 eiL~kLk~~~~A~~F~ePVDp~--~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk 115 (602)
.+|.+|++++.+++|.+|||+. .+||||++|++||||+||++||+++.|.++++|.+||+|||.||+.||++++.+++
T Consensus 12 ~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~ 91 (107)
T cd05497 12 VVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNKPGDDVVL 91 (107)
T ss_pred HHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 6789999999999999999987 69999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 007472 116 QARSIHELAKKNFENL 131 (602)
Q Consensus 116 ~Ak~L~e~fek~~ekL 131 (602)
+|..|++.|++.++++
T Consensus 92 ~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 92 MAQTLEKLFLQKLAQM 107 (107)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999998764
No 3
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.9e-24 Score=197.01 Aligned_cols=100 Identities=26% Similarity=0.394 Sum_probs=95.0
Q ss_pred ChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCC-CCHH
Q 007472 35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP-DTIY 113 (602)
Q Consensus 35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~p-dS~V 113 (602)
.|..+|..|++++.+++|.+|||+..+|||+++|++||||+||++||+++.|.++++|..||+|||.||+.||++ ++.+
T Consensus 9 ~c~~il~~l~~~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~~~~s~i 88 (119)
T cd05496 9 QCKELVNLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYTPNKRSRI 88 (119)
T ss_pred HHHHHHHHHHhCCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
Confidence 367889999999999999999999999999999999999999999999999999999999999999999999985 8999
Q ss_pred HHHHHHHHHHHHHHHHhhhCC
Q 007472 114 FRQARSIHELAKKNFENLRQD 134 (602)
Q Consensus 114 yk~Ak~L~e~fek~~ekL~~e 134 (602)
|.+|..|+..|++.+.++...
T Consensus 89 ~~~a~~L~~~F~~~~~~l~~~ 109 (119)
T cd05496 89 YSMTLRLSALFEEHIKKIISD 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888643
No 4
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.5e-24 Score=192.71 Aligned_cols=97 Identities=26% Similarity=0.460 Sum_probs=92.2
Q ss_pred hHHHHHHHHhC-CCCCCCcCCCCCC--CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCH
Q 007472 36 DPQRLYQIKSY-CCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI 112 (602)
Q Consensus 36 ~~eiL~kLk~~-~~A~~F~ePVDp~--~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~ 112 (602)
+..+|.+|+++ +.+++|.+||+++ ++||||++|++||||+||++||+++.|.++.+|.+||+|||.||+.||++++.
T Consensus 8 ~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~ 87 (108)
T cd05495 8 LMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLYNRKTSR 87 (108)
T ss_pred HHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 45788999999 9999999999998 69999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 007472 113 YFRQARSIHELAKKNFENLR 132 (602)
Q Consensus 113 Vyk~Ak~L~e~fek~~ekL~ 132 (602)
+|++|.+|++.|++.++.+.
T Consensus 88 i~~~a~~l~~~F~~~~~~~~ 107 (108)
T cd05495 88 VYKYCTKLAEVFEQEIDPVM 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988753
No 5
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.8e-24 Score=189.76 Aligned_cols=95 Identities=27% Similarity=0.442 Sum_probs=91.8
Q ss_pred CChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHH
Q 007472 34 NWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIY 113 (602)
Q Consensus 34 ~~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~V 113 (602)
.+|..+|.+|.+++.+++|.+||++..+|+|+++|++||||+||++||+++.|+++++|..||+|||.||+.||++++.+
T Consensus 3 ~~c~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i 82 (97)
T cd05503 3 ALCETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDSEV 82 (97)
T ss_pred HHHHHHHHHHHcCCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 007472 114 FRQARSIHELAKKNF 128 (602)
Q Consensus 114 yk~Ak~L~e~fek~~ 128 (602)
+++|..|++.|++.|
T Consensus 83 ~~~a~~l~~~f~~~~ 97 (97)
T cd05503 83 GRAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998865
No 6
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.7e-24 Score=191.17 Aligned_cols=96 Identities=23% Similarity=0.362 Sum_probs=91.8
Q ss_pred hHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHH
Q 007472 36 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115 (602)
Q Consensus 36 ~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk 115 (602)
|..+|.+|++++.+++|.+||+++.+|||+++|++||||+||++||+++.|.+++||.+||+|||.||+.||++++.+|.
T Consensus 8 ~~~il~~l~~~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~v~~ 87 (104)
T cd05507 8 ILLVYRTLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSSDHDVYL 87 (104)
T ss_pred HHHHHHHHHcCCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 007472 116 QARSIHELAKKNFENL 131 (602)
Q Consensus 116 ~Ak~L~e~fek~~ekL 131 (602)
+|..|++.+.+.++.+
T Consensus 88 ~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 88 MAVEMQREVMSQIQQL 103 (104)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999998887653
No 7
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=3.3e-24 Score=194.04 Aligned_cols=99 Identities=29% Similarity=0.426 Sum_probs=95.6
Q ss_pred CChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHH
Q 007472 34 NWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIY 113 (602)
Q Consensus 34 ~~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~V 113 (602)
.+|..+|.+|++++.+++|.+||+...+||||++|++||||+||++||+++.|.++++|+.||+|||.||+.||++++.+
T Consensus 15 ~~c~~il~~l~~~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN~~~s~i 94 (115)
T cd05504 15 SALEQLLVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNPEHTSV 94 (115)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 007472 114 FRQARSIHELAKKNFENLR 132 (602)
Q Consensus 114 yk~Ak~L~e~fek~~ekL~ 132 (602)
|++|..|++.|++.++++.
T Consensus 95 ~~~A~~l~~~f~~~~~~~~ 113 (115)
T cd05504 95 YKAGTRLQRFFIKRCRKLG 113 (115)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 9999999999999998874
No 8
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.90 E-value=4.9e-24 Score=239.97 Aligned_cols=107 Identities=27% Similarity=0.484 Sum_probs=100.1
Q ss_pred CChHHHHHHHHhCCCCCCCcCCCCCC--CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCC
Q 007472 34 NWDPQRLYQIKSYCCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 111 (602)
Q Consensus 34 ~~~~eiL~kLk~~~~A~~F~ePVDp~--~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS 111 (602)
..|..||.+|+.|..+|+|.+|||+. .+||||+||++||||+||++||+++.|.++.+|..||+|||.|||+||++++
T Consensus 225 k~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~YNp~g~ 304 (640)
T KOG1474|consen 225 KQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCMTYNPEGS 304 (640)
T ss_pred HHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 35789999999999999999999998 6999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCCCCc
Q 007472 112 IYFRQARSIHELAKKNFENLRQDSDDNEP 140 (602)
Q Consensus 112 ~Vyk~Ak~L~e~fek~~ekL~~e~e~~E~ 140 (602)
+||.+|+.|+++|+.+|+.+....+....
T Consensus 305 dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~ 333 (640)
T KOG1474|consen 305 DVYAMAKKLQEVFEERWASMPLEIEESES 333 (640)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 99999999999999999998776554433
No 9
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=9.9e-24 Score=185.47 Aligned_cols=97 Identities=37% Similarity=0.545 Sum_probs=93.5
Q ss_pred ChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHH
Q 007472 35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF 114 (602)
Q Consensus 35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vy 114 (602)
.|..+|..+++++.+++|.+||++..+|+|+++|++||||+||++||+++.|.++++|..||+|||+||+.||++++.++
T Consensus 5 ~~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~ 84 (101)
T cd05509 5 QLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPDTEYY 84 (101)
T ss_pred HHHHHHHHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 007472 115 RQARSIHELAKKNFENL 131 (602)
Q Consensus 115 k~Ak~L~e~fek~~ekL 131 (602)
++|..|++.|++.++++
T Consensus 85 ~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 85 KCANKLEKFFWKKLKEL 101 (101)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999998864
No 10
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=7.8e-24 Score=187.30 Aligned_cols=89 Identities=26% Similarity=0.402 Sum_probs=85.0
Q ss_pred HHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHH
Q 007472 38 QRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQA 117 (602)
Q Consensus 38 eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~A 117 (602)
.++.+++ ++.+++|.+||++..+|||+++|++||||+||++||+++.|+++++|.+||+|||.||+.||++++.++.+|
T Consensus 10 ~~~~~~~-~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~s~i~~~A 88 (99)
T cd05508 10 FALERMK-QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGDHKLTQAA 88 (99)
T ss_pred HHHHHHh-CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 5677888 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 007472 118 RSIHELAKKN 127 (602)
Q Consensus 118 k~L~e~fek~ 127 (602)
+.|.+.|+..
T Consensus 89 ~~l~~~~~~e 98 (99)
T cd05508 89 KAIVKICEQE 98 (99)
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 11
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.1e-23 Score=190.12 Aligned_cols=98 Identities=30% Similarity=0.432 Sum_probs=93.1
Q ss_pred ChHHHHHHHHhC-CCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCC-H
Q 007472 35 WDPQRLYQIKSY-CCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT-I 112 (602)
Q Consensus 35 ~~~eiL~kLk~~-~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS-~ 112 (602)
.|.++|.+|+++ +.+++|.+||+++.+||||++|++||||+||++||+++.|+++++|.+||+|||.||+.||++++ .
T Consensus 11 ~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~yN~~~s~~ 90 (112)
T cd05510 11 SLDKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLYNSDPSHP 90 (112)
T ss_pred HHHHHHHHHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 467899999999 89999999999999999999999999999999999999999999999999999999999999865 7
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 007472 113 YFRQARSIHELAKKNFENLR 132 (602)
Q Consensus 113 Vyk~Ak~L~e~fek~~ekL~ 132 (602)
++++|..|++.|++.++.++
T Consensus 91 ~~~~A~~l~~~~~~~~~~~~ 110 (112)
T cd05510 91 LRRHANFMKKKAEHLLKLIP 110 (112)
T ss_pred HHHHHHHHHHHHHHHHHHCC
Confidence 88999999999999998875
No 12
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.1e-23 Score=186.13 Aligned_cols=92 Identities=35% Similarity=0.621 Sum_probs=87.6
Q ss_pred hHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHH
Q 007472 36 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115 (602)
Q Consensus 36 ~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk 115 (602)
+.++|.+|+.++.+++|..||+.+.+|||+++|++||||+||++||+++.|.++++|++||+|||.||+.||++++.+|+
T Consensus 6 l~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~ 85 (98)
T cd05513 6 LEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPDTIYYK 85 (98)
T ss_pred HHHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 007472 116 QARSIHELAKKN 127 (602)
Q Consensus 116 ~Ak~L~e~fek~ 127 (602)
+|.+|.+...++
T Consensus 86 ~A~~L~~~~~~~ 97 (98)
T cd05513 86 AAKKLLHSGMKI 97 (98)
T ss_pred HHHHHHHhhhhh
Confidence 999998876554
No 13
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=2.6e-23 Score=185.87 Aligned_cols=97 Identities=22% Similarity=0.391 Sum_probs=93.0
Q ss_pred ChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhc---CCCCCHHHHHHHHHHHHHHhchhcCCCC
Q 007472 35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLAN---GAYATLEQFEKDVFLICSNAMQYNAPDT 111 (602)
Q Consensus 35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~---g~Y~SveEF~~DV~LIfsNA~~YN~pdS 111 (602)
+|.+||.+|++++.+++|.+||++ .+|+|+++|++||||+||++||++ +.|.++++|.+||+|||+||+.||++++
T Consensus 8 ~c~~il~~l~~~~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s 86 (109)
T cd05502 8 KCERLLLELYCHELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKFNEEDS 86 (109)
T ss_pred HHHHHHHHHHhCCCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 477899999999999999999999 899999999999999999999998 5999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 007472 112 IYFRQARSIHELAKKNFENLR 132 (602)
Q Consensus 112 ~Vyk~Ak~L~e~fek~~ekL~ 132 (602)
.++++|+.|++.|++.++++.
T Consensus 87 ~i~~~a~~l~~~f~~~~~~~~ 107 (109)
T cd05502 87 EVAQAGKELELFFEEQLKEIL 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999998864
No 14
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=2.3e-23 Score=182.39 Aligned_cols=94 Identities=31% Similarity=0.495 Sum_probs=90.7
Q ss_pred ChHHHHHHHHhCCCCCCCcCCCCCC--CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCH
Q 007472 35 WDPQRLYQIKSYCCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI 112 (602)
Q Consensus 35 ~~~eiL~kLk~~~~A~~F~ePVDp~--~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~ 112 (602)
.|.++|.+|++++.+++|.+||++. .+|+|+++|++||||+||++||+++.|.++++|.+|++|||.||+.||++++.
T Consensus 4 ~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~s~ 83 (99)
T cd05506 4 QCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPGND 83 (99)
T ss_pred HHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 4789999999999999999999987 69999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 007472 113 YFRQARSIHELAKKNF 128 (602)
Q Consensus 113 Vyk~Ak~L~e~fek~~ 128 (602)
++++|.+|++.|++.|
T Consensus 84 i~~~a~~l~~~fe~~w 99 (99)
T cd05506 84 VHTMAKELLKIFETRW 99 (99)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999999875
No 15
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=2e-23 Score=184.26 Aligned_cols=95 Identities=27% Similarity=0.514 Sum_probs=89.6
Q ss_pred CChHHHHHHHHh---CCCCCCCcCCCCCC--CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcC
Q 007472 34 NWDPQRLYQIKS---YCCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNA 108 (602)
Q Consensus 34 ~~~~eiL~kLk~---~~~A~~F~ePVDp~--~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~ 108 (602)
.+|.+||.+|++ ++.+++|.+|||+. .+|||+++|++||||++|++||+++.|+++++|..||+|||.||+.||+
T Consensus 3 ~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn~ 82 (102)
T cd05499 3 KFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFNP 82 (102)
T ss_pred HHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 467788888887 46799999999998 8999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 007472 109 PDTIYFRQARSIHELAKKNF 128 (602)
Q Consensus 109 pdS~Vyk~Ak~L~e~fek~~ 128 (602)
+++.++.+|..|++.|++.|
T Consensus 83 ~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 83 EGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999998865
No 16
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=3.9e-23 Score=182.03 Aligned_cols=94 Identities=33% Similarity=0.545 Sum_probs=90.2
Q ss_pred ChHHHHHHHHhC---CCCCCCcCCCCCC--CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCC
Q 007472 35 WDPQRLYQIKSY---CCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 109 (602)
Q Consensus 35 ~~~eiL~kLk~~---~~A~~F~ePVDp~--~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~p 109 (602)
.|.+||.+|+++ +.+++|.+||++. .+|||+++|++||||+||++||+++.|.++++|..||+|||.||+.||++
T Consensus 4 ~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn~~ 83 (102)
T cd05498 4 FCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYNPP 83 (102)
T ss_pred HHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 578999999999 8899999999987 59999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 007472 110 DTIYFRQARSIHELAKKNF 128 (602)
Q Consensus 110 dS~Vyk~Ak~L~e~fek~~ 128 (602)
++.++.+|..|++.|++.|
T Consensus 84 ~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 84 DHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999875
No 17
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=2.9e-23 Score=183.10 Aligned_cols=89 Identities=38% Similarity=0.611 Sum_probs=85.6
Q ss_pred HHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHH
Q 007472 37 PQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116 (602)
Q Consensus 37 ~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~ 116 (602)
..+|.+|++++.+++|.+|||...+|||+++|++||||+||++||+++.|.++++|+.||+|||.||+.||++++.+|++
T Consensus 7 ~~il~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~~~ 86 (98)
T cd05512 7 RKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKDTIFYRA 86 (98)
T ss_pred HHHHHHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 007472 117 ARSIHELAK 125 (602)
Q Consensus 117 Ak~L~e~fe 125 (602)
|.+|++..+
T Consensus 87 A~~l~~~~~ 95 (98)
T cd05512 87 AVRLRDQGG 95 (98)
T ss_pred HHHHHHhhc
Confidence 999988653
No 18
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=4.6e-23 Score=182.53 Aligned_cols=94 Identities=23% Similarity=0.482 Sum_probs=90.0
Q ss_pred CChHHHHHHHHhCCCCCCCcCCCCCC--CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCC
Q 007472 34 NWDPQRLYQIKSYCCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 111 (602)
Q Consensus 34 ~~~~eiL~kLk~~~~A~~F~ePVDp~--~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS 111 (602)
.+|.++|.+|++++.+++|.+|||+. .+|||+++|++||||+||++||+++.|.++++|..||+|||.||+.||++++
T Consensus 7 ~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s 86 (103)
T cd05500 7 KFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFNGPEH 86 (103)
T ss_pred HHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 35778999999999999999999987 7999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 007472 112 IYFRQARSIHELAKKN 127 (602)
Q Consensus 112 ~Vyk~Ak~L~e~fek~ 127 (602)
.++.+|+.|++.|++.
T Consensus 87 ~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 87 PVSQMGKRLQAAFEKH 102 (103)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999875
No 19
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=5.4e-23 Score=185.28 Aligned_cols=98 Identities=29% Similarity=0.556 Sum_probs=94.6
Q ss_pred HHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHH
Q 007472 37 PQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116 (602)
Q Consensus 37 ~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~ 116 (602)
.+++.+|++++.+++|.+||++..+|+||++|++||||+||++||+++.|+++++|..||+|||.||+.||++++.++++
T Consensus 6 ~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~~~ 85 (112)
T cd05511 6 DEIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSVYTKK 85 (112)
T ss_pred HHHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCC
Q 007472 117 ARSIHELAKKNFENLRQD 134 (602)
Q Consensus 117 Ak~L~e~fek~~ekL~~e 134 (602)
|+.|.+.|++.++.++++
T Consensus 86 A~~l~~~~~~~~~~~~~~ 103 (112)
T cd05511 86 AKEMLELAEELLAEREEK 103 (112)
T ss_pred HHHHHHHHHHHHHHhHHH
Confidence 999999999999988654
No 20
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.8e-22 Score=179.85 Aligned_cols=95 Identities=24% Similarity=0.324 Sum_probs=89.0
Q ss_pred ChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHH
Q 007472 35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF 114 (602)
Q Consensus 35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vy 114 (602)
.|..+|.+|..++.+++|.. ++..+|||+++|++||||+||++||.++.|.++++|.+||+|||.||+.||+++ .++
T Consensus 6 ~ce~il~~l~~~~~s~~f~~--~p~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~-~~~ 82 (102)
T cd05501 6 KCEFLLLKVYCMSKSGFFIS--KPYYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD-DFG 82 (102)
T ss_pred HHHHHHHHHHhCcccccccC--CCCCCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC-HHH
Confidence 37789999999999999966 356899999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 007472 115 RQARSIHELAKKNFENLR 132 (602)
Q Consensus 115 k~Ak~L~e~fek~~ekL~ 132 (602)
++|..|++.|++.|+++-
T Consensus 83 ~~a~~L~~~Fek~~~~~f 100 (102)
T cd05501 83 QVGITLEKKFEKNFKEVF 100 (102)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999998753
No 21
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.88 E-value=1.4e-22 Score=182.86 Aligned_cols=97 Identities=30% Similarity=0.409 Sum_probs=92.1
Q ss_pred hHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCC----C
Q 007472 36 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD----T 111 (602)
Q Consensus 36 ~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pd----S 111 (602)
+.+++.+|++++.+++|.+|||+..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||+++ +
T Consensus 8 L~~il~~l~~~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~~~s 87 (112)
T cd05528 8 LRDVLKRLASDKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPDRDPADK 87 (112)
T ss_pred HHHHHHHHHhCCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCCCCCcccc
Confidence 457899999999999999999999999999999999999999999999999999999999999999999999995 6
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 007472 112 IYFRQARSIHELAKKNFENLR 132 (602)
Q Consensus 112 ~Vyk~Ak~L~e~fek~~ekL~ 132 (602)
.++.+|..|++.|++.++.+.
T Consensus 88 ~i~~~A~~L~~~~~~~~~~~~ 108 (112)
T cd05528 88 LIRSRACELRDEVHAMIEAEL 108 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999988653
No 22
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=2.5e-22 Score=179.49 Aligned_cols=94 Identities=26% Similarity=0.508 Sum_probs=86.4
Q ss_pred HHHHHHHhCCC------CCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCC
Q 007472 38 QRLYQIKSYCC------SSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 111 (602)
Q Consensus 38 eiL~kLk~~~~------A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS 111 (602)
.+|..++++.. +++|.+||+...+||||++|++||||+||++||+++.|.++++|..||.|||.||+.||++++
T Consensus 8 ~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s 87 (107)
T cd05516 8 KIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQTFNLEGS 87 (107)
T ss_pred HHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 45555555554 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 007472 112 IYFRQARSIHELAKKNFENL 131 (602)
Q Consensus 112 ~Vyk~Ak~L~e~fek~~ekL 131 (602)
.+|.+|..|++.|++.++++
T Consensus 88 ~i~~~a~~l~~~f~~~~~~~ 107 (107)
T cd05516 88 LIYEDSIVLQSVFKSARQKI 107 (107)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999988753
No 23
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=6.3e-22 Score=178.71 Aligned_cols=100 Identities=22% Similarity=0.320 Sum_probs=91.4
Q ss_pred ChHHHHHHHHhC------CCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcC
Q 007472 35 WDPQRLYQIKSY------CCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNA 108 (602)
Q Consensus 35 ~~~eiL~kLk~~------~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~ 108 (602)
.|.+++..|+++ ..+.+|.++++...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||+
T Consensus 6 ~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~ 85 (113)
T cd05524 6 VCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAYYK 85 (113)
T ss_pred HHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 466777777753 44578999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhCC
Q 007472 109 PDTIYFRQARSIHELAKKNFENLRQD 134 (602)
Q Consensus 109 pdS~Vyk~Ak~L~e~fek~~ekL~~e 134 (602)
+++.+|++|..|++.|++.++++...
T Consensus 86 ~~s~~~~~A~~L~~~f~~~~~~~~~~ 111 (113)
T cd05524 86 PDSPEHKDACKLWELFLSARNEVLSG 111 (113)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999888654
No 24
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=1.4e-21 Score=179.93 Aligned_cols=94 Identities=27% Similarity=0.439 Sum_probs=88.7
Q ss_pred HHHHHHHH---hCCCCCCCcCCCCCC-CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCH
Q 007472 37 PQRLYQIK---SYCCSSSIDFKMDPE-ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI 112 (602)
Q Consensus 37 ~eiL~kLk---~~~~A~~F~ePVDp~-~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~ 112 (602)
+.+|.+|. +++.+++|..||++. .+|+|+++|++||||+||++||+++.|+++++|+.||+|||.||+.||++++.
T Consensus 30 ~~~l~~l~~~~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~yN~~~s~ 109 (128)
T cd05529 30 ISGLDKLLLSLQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAETFNEPNSE 109 (128)
T ss_pred HHHHHHHHhcccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 35567777 899999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 007472 113 YFRQARSIHELAKKNFEN 130 (602)
Q Consensus 113 Vyk~Ak~L~e~fek~~ek 130 (602)
++++|++|++.|.+.+..
T Consensus 110 i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 110 IAKKAKRLSDWLLRILSS 127 (128)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999888753
No 25
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=1.1e-21 Score=173.79 Aligned_cols=93 Identities=24% Similarity=0.380 Sum_probs=84.6
Q ss_pred hHHHHHHHH------hCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCC
Q 007472 36 DPQRLYQIK------SYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 109 (602)
Q Consensus 36 ~~eiL~kLk------~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~p 109 (602)
|.+++..++ .+..+++|.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++
T Consensus 5 ~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~~ 84 (103)
T cd05519 5 MLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTYNQE 84 (103)
T ss_pred HHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 345555555 45568999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 007472 110 DTIYFRQARSIHELAKKNF 128 (602)
Q Consensus 110 dS~Vyk~Ak~L~e~fek~~ 128 (602)
++.+|.+|+.|++.|++.+
T Consensus 85 ~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 85 GSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999998753
No 26
>smart00297 BROMO bromo domain.
Probab=99.85 E-value=2.9e-21 Score=169.05 Aligned_cols=95 Identities=34% Similarity=0.570 Sum_probs=90.9
Q ss_pred hHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHH
Q 007472 36 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115 (602)
Q Consensus 36 ~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk 115 (602)
|..++..+.+++.+++|.+||+...+|+|+++|++||||++|++||+++.|.++++|..||++||.||+.||++++.+++
T Consensus 12 ~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n~~~s~~~~ 91 (107)
T smart00297 12 LKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYNGPDSEVYK 91 (107)
T ss_pred HHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 45778888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 007472 116 QARSIHELAKKNFEN 130 (602)
Q Consensus 116 ~Ak~L~e~fek~~ek 130 (602)
+|..|++.|++.+++
T Consensus 92 ~a~~l~~~f~~~~~~ 106 (107)
T smart00297 92 DAKKLEKFFEKKLRE 106 (107)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998875
No 27
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.85 E-value=2.1e-21 Score=172.77 Aligned_cols=82 Identities=29% Similarity=0.541 Sum_probs=78.4
Q ss_pred CCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHHH
Q 007472 46 YCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAK 125 (602)
Q Consensus 46 ~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~fe 125 (602)
+..+++|.++|+...+||||++|++||||+||++||+++.|.++++|+.||+|||.||+.||++++.+|++|..|+++|+
T Consensus 21 ~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~L~~~f~ 100 (103)
T cd05520 21 QLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQKLMQ 100 (103)
T ss_pred CCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HH
Q 007472 126 KN 127 (602)
Q Consensus 126 k~ 127 (602)
+.
T Consensus 101 ~~ 102 (103)
T cd05520 101 AK 102 (103)
T ss_pred Hh
Confidence 63
No 28
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.85 E-value=2.6e-21 Score=224.59 Aligned_cols=312 Identities=27% Similarity=0.311 Sum_probs=206.5
Q ss_pred hhhHHHHHHHHHHHH-HHHHHH-hccCCcCChH--HHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHh
Q 007472 7 LAVLTVKRERRLFLV-RIQQIT-TKGLSWNWDP--QRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLA 82 (602)
Q Consensus 7 lA~l~~krErRk~~~-rl~~i~-~~~L~~~~~~--eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~ 82 (602)
+-++.++||+.+... .++... ..++...... .+|.+++..+....|.+|||+.++|||.++|++||||.||+.+++
T Consensus 537 l~e~~r~r~~lk~~~~~~~~~~~~~~l~p~~kLl~~~l~~lq~kD~~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~ 616 (1051)
T KOG0955|consen 537 LVELTRKREKLKRILVKSQKEALELGLNPFKKLLQKSLDKLQKKDSYGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLE 616 (1051)
T ss_pred HHHhhhhHHHHHHHHhchhhhhhcccCchHHHHHHHHHHHhhcccccCceeeccChhhcccHHHHhcCccchhhhhhhcc
Confidence 455666666665442 222222 2233333222 567899999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHHHHHHHhhhCCCCCCC-cccc--------cccCCCCCCC
Q 007472 83 NGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSDDNE-PETK--------VVRRGRPPTK 153 (602)
Q Consensus 83 ~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~fek~~ekL~~e~e~~E-~e~k--------v~rr~Rpp~k 153 (602)
++.|+++++|++|+.||+.||+.||..++.+|++|.++++...+.+.+.+.+.+... .+.. +.+..++...
T Consensus 617 s~~y~tle~ieed~~l~~~nc~~yn~~dtv~~r~av~~~e~~~~~~~~arke~e~~~~~d~~~~~~~~~~~~~~~~~~~~ 696 (1051)
T KOG0955|consen 617 SGAYSTLEPIEEDVNLIVSNCMEYNAKDTVYYRAAVRLRELIKKDFRNARKEPESEGLLDRESLSHHDHLVKKLERPYRP 696 (1051)
T ss_pred ccchhhhhHHHHhHhHhHhHHHHhhccCeehHhhhHHHHhhhhhHHHhcccchhhhcccchhhhcccchhhhhhccCCcc
Confidence 999999999999999999999999999999999999999999999999888766544 2211 1122333333
Q ss_pred CCCCCCCCCccccccCCCCCccccccCCCCcc--cccc-ccCCCCCCCCCCcccccccccCCCCCCccccccccccccc-
Q 007472 154 NFKKPLGRPSLERARSDFSSDVTLASGAENTA--LTNR-DLGNGTPHLEKSGFTDSSRRFSGSWNDLYTGCLAENKLER- 229 (602)
Q Consensus 154 ~~KK~~~rps~e~~~sd~Ss~atlA~g~e~~~--~s~~-d~~~~~~~~~k~g~~~~~~~~~g~~~~~~~~~~~~~~~e~- 229 (602)
..............-...+.+.-+...-+... .+.. +.++. . .+.. .+ ++-++ ..-|.+ ...|.
T Consensus 697 ~~~~~e~~~v~~e~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~----~-~~~~--~~-~~~s~---~r~~~~-~~~e~~ 764 (1051)
T KOG0955|consen 697 NLWAPEEPQVDLETFINLSKEHDLKIPLDKNEKKKATKLSIPRN----R-DSRI--IR-KEKSR---LRKCGI-VDTETS 764 (1051)
T ss_pred ccccccccccccccccccChhhhhccccccchhhhhhhcccccc----c-cccc--ch-hhHHH---HhhccC-cCcccc
Confidence 33333222211111222222211111100000 0000 00000 0 0000 00 00000 000111 00010
Q ss_pred -cccc--ccccCCccCCCCcccccccccccccccccccccCCceeccccccccceeEeccCCcchhHHHHHHHHHhhChH
Q 007472 230 -NDEV--SLSKGYSMKHGKKQVVLDENRRNTYKQFHQSLRESSVLTTFDADKKQLMTVGLHSEHGYTRSLARFAANLGPV 306 (602)
Q Consensus 230 -~~e~--s~~~g~~~k~G~k~~~~dE~RR~TY~~~~~s~~~~svft~~~~e~K~Lv~VG~~~e~~YArSLarFaa~lGp~ 306 (602)
..+. +..+++ .|+|.+. .+++.+|.+..++-.++++++.+..+.|++-|+++-.+.+|+||+++.+++.+++
T Consensus 765 ~~~~~p~~~~~~~-~~~~~~~----~~~~~~~~~~~s~p~~~~~~sp~~~~~~~~~p~~l~~~s~~~~sn~~l~~n~t~~ 839 (1051)
T KOG0955|consen 765 GSPSIPSGGEKTV-KKDGLNS----KNLKMSSDQALSSPPSEPLGSPYNDSVKGVKPSVLLEKSGLLRSNANLSQNPTAS 839 (1051)
T ss_pred CCCCCCCccccch-hcccccc----cccccccchhhcCCCCCCCCCCccccccccCchhhHhhccccccccccccCCCcc
Confidence 0000 112232 3455543 6899999998777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCccCCcccccCCC
Q 007472 307 AWKIAARRIERCLPAGVRFGPGWVVENDL 335 (602)
Q Consensus 307 aw~iAs~rI~~~Lp~g~~FG~GWVge~e~ 335 (602)
||.+|+.+++..++.+..||.||+++...
T Consensus 840 ~~~~~~~~~~~~~~~~~~~g~g~~~~tP~ 868 (1051)
T KOG0955|consen 840 ANNLASTSCSVTKATFTGNGVGGDVKTPK 868 (1051)
T ss_pred cccccccccccccCCccCCCCCccccCCC
Confidence 99999999999999999999999666544
No 29
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.84 E-value=3.9e-21 Score=171.21 Aligned_cols=85 Identities=26% Similarity=0.471 Sum_probs=80.5
Q ss_pred hCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHH
Q 007472 45 SYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELA 124 (602)
Q Consensus 45 ~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~f 124 (602)
.++.+++|.+||+.+++||||++|++||||+||++||+++.|.++++|..||.|||.||+.||++++.+|++|..|++.|
T Consensus 20 ~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~yN~~~s~i~~~A~~L~~~~ 99 (105)
T cd05515 20 GRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKYNEPDSQIYKDALTLQKVL 99 (105)
T ss_pred CCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 007472 125 KKNFE 129 (602)
Q Consensus 125 ek~~e 129 (602)
.+..+
T Consensus 100 ~~~~~ 104 (105)
T cd05515 100 LETKR 104 (105)
T ss_pred HHHHc
Confidence 77653
No 30
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.84 E-value=8e-21 Score=169.09 Aligned_cols=83 Identities=25% Similarity=0.410 Sum_probs=79.5
Q ss_pred HhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHH
Q 007472 44 KSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHEL 123 (602)
Q Consensus 44 k~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~ 123 (602)
..+..+.+|..+|+...+||||++|++||||+||++||+++.|.++++|+.||+|||.||+.||++++.+|.+|..|+.+
T Consensus 19 ~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~le~~ 98 (103)
T cd05518 19 SGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYNEEGSQVYEDANILEKV 98 (103)
T ss_pred CCCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 36678899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHH
Q 007472 124 AKK 126 (602)
Q Consensus 124 fek 126 (602)
|++
T Consensus 99 ~~~ 101 (103)
T cd05518 99 LKE 101 (103)
T ss_pred HHh
Confidence 875
No 31
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.83 E-value=9.4e-21 Score=168.55 Aligned_cols=81 Identities=27% Similarity=0.484 Sum_probs=77.4
Q ss_pred CCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHHH
Q 007472 46 YCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAK 125 (602)
Q Consensus 46 ~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~fe 125 (602)
+..+++|.++++...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.+|++|..|++.|+
T Consensus 21 r~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~l~~~f~ 100 (103)
T cd05517 21 RLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTFNEPGSQVYKDANAIKKIFT 100 (103)
T ss_pred CChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred H
Q 007472 126 K 126 (602)
Q Consensus 126 k 126 (602)
.
T Consensus 101 ~ 101 (103)
T cd05517 101 A 101 (103)
T ss_pred h
Confidence 4
No 32
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=1.1e-20 Score=168.99 Aligned_cols=82 Identities=22% Similarity=0.327 Sum_probs=78.2
Q ss_pred CCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHHH
Q 007472 46 YCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAK 125 (602)
Q Consensus 46 ~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~fe 125 (602)
+..+++|.++++...+||||++|++||||+||++||+++.|.++++|..||.|||.||+.||++++.+|++|..|++.|+
T Consensus 23 ~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~yn~~~S~i~~~A~~L~~~f~ 102 (106)
T cd05525 23 QSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEKYYGRKSPIGRDVCRLRKAYY 102 (106)
T ss_pred CcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HH
Q 007472 126 KN 127 (602)
Q Consensus 126 k~ 127 (602)
+.
T Consensus 103 ~~ 104 (106)
T cd05525 103 QA 104 (106)
T ss_pred Hc
Confidence 53
No 33
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.83 E-value=9.6e-21 Score=159.04 Aligned_cols=84 Identities=42% Similarity=0.686 Sum_probs=79.9
Q ss_pred hHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHH
Q 007472 36 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115 (602)
Q Consensus 36 ~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk 115 (602)
|.++|.+|++++.+++|.+||+...+|+|+++|++||||++|++||+++.|+++++|..||++||.||+.||++++.+|+
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~~ 80 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPIYK 80 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 007472 116 QARS 119 (602)
Q Consensus 116 ~Ak~ 119 (602)
+|++
T Consensus 81 ~A~~ 84 (84)
T PF00439_consen 81 AAEK 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9974
No 34
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.82 E-value=2.3e-20 Score=157.62 Aligned_cols=93 Identities=41% Similarity=0.610 Sum_probs=88.6
Q ss_pred ChHHHHHHHHhC--CCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCH
Q 007472 35 WDPQRLYQIKSY--CCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI 112 (602)
Q Consensus 35 ~~~eiL~kLk~~--~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~ 112 (602)
.|..++..++.+ +.+.+|..||++..+|+|+++|++||||.+|++||+++.|.++++|..||++||.||+.||+.++.
T Consensus 4 ~~~~i~~~l~~~~~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~~~ 83 (99)
T cd04369 4 KLRSLLDALKKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGSP 83 (99)
T ss_pred HHHHHHHHHHhhcccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 356788889888 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 007472 113 YFRQARSIHELAKKN 127 (602)
Q Consensus 113 Vyk~Ak~L~e~fek~ 127 (602)
++++|..|+..|++.
T Consensus 84 ~~~~a~~l~~~~~~~ 98 (99)
T cd04369 84 IYKDAKKLEKLFEKL 98 (99)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998875
No 35
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.81 E-value=5.2e-20 Score=163.84 Aligned_cols=82 Identities=22% Similarity=0.376 Sum_probs=79.0
Q ss_pred CCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHHH
Q 007472 46 YCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAK 125 (602)
Q Consensus 46 ~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~fe 125 (602)
++.+++|.++|+.+.+||||++|++||||+||++||+++.|.++++|+.|++|||.||+.||++++.+|.+|..|++.|+
T Consensus 22 ~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~i~~~A~~l~~~f~ 101 (104)
T cd05522 22 RLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYNENDSQEYKDAVLLEKEAR 101 (104)
T ss_pred CcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HH
Q 007472 126 KN 127 (602)
Q Consensus 126 k~ 127 (602)
+.
T Consensus 102 ~l 103 (104)
T cd05522 102 LL 103 (104)
T ss_pred Hh
Confidence 64
No 36
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.79 E-value=3.1e-19 Score=160.80 Aligned_cols=94 Identities=20% Similarity=0.341 Sum_probs=84.3
Q ss_pred HHHHHHh-CCCCCCCcCCCCCC-----CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCH
Q 007472 39 RLYQIKS-YCCSSSIDFKMDPE-----ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI 112 (602)
Q Consensus 39 iL~kLk~-~~~A~~F~ePVDp~-----~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~ 112 (602)
++.++++ .+.+.+|..||.++ .+|+|+++|++||||+||++||+++.|++++||..||.|||+||+.||++++.
T Consensus 8 ~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~s~ 87 (109)
T cd05492 8 IVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGADSE 87 (109)
T ss_pred HHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 4566666 56679999999733 49999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 007472 113 YFRQARSIHELAKKNFENLR 132 (602)
Q Consensus 113 Vyk~Ak~L~e~fek~~ekL~ 132 (602)
++.+|+.|.+.....+.++.
T Consensus 88 ~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 88 QYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999888877777664
No 37
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.79 E-value=3.5e-19 Score=159.48 Aligned_cols=82 Identities=21% Similarity=0.382 Sum_probs=76.6
Q ss_pred CCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHHH
Q 007472 46 YCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAK 125 (602)
Q Consensus 46 ~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~fe 125 (602)
+..+.+|...++.+.+||||++|++||||+||++||++ |.++++|+.|+.|||+||+.||++++.+|++|..|++.|.
T Consensus 22 ~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~le~~~~ 99 (106)
T cd05521 22 IEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARLYNTKGSVIYKYALILEKYIN 99 (106)
T ss_pred CCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 34567999999999999999999999999999999998 9999999999999999999999999999999999999998
Q ss_pred HHHH
Q 007472 126 KNFE 129 (602)
Q Consensus 126 k~~e 129 (602)
+.+.
T Consensus 100 ~~~~ 103 (106)
T cd05521 100 DVII 103 (106)
T ss_pred Hhhc
Confidence 7653
No 38
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.64 E-value=2.8e-16 Score=166.89 Aligned_cols=91 Identities=32% Similarity=0.496 Sum_probs=85.7
Q ss_pred hCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHH
Q 007472 45 SYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELA 124 (602)
Q Consensus 45 ~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~f 124 (602)
......+|..+|+...+|+||.||+.||||.+|++||+.+.|+++++|..|+.|||.||..||++++.+|.+|+.|++.|
T Consensus 162 ~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~ 241 (371)
T COG5076 162 GRFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYF 241 (371)
T ss_pred ccccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCC
Q 007472 125 KKNFENLRQDS 135 (602)
Q Consensus 125 ek~~ekL~~e~ 135 (602)
.+.++.+....
T Consensus 242 ~~~i~~~~~~~ 252 (371)
T COG5076 242 LKLIEEIPEEM 252 (371)
T ss_pred HHHHHhccccc
Confidence 99999886543
No 39
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.62 E-value=8.4e-16 Score=138.90 Aligned_cols=84 Identities=19% Similarity=0.339 Sum_probs=76.7
Q ss_pred CCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHHHH
Q 007472 47 CCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKK 126 (602)
Q Consensus 47 ~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~fek 126 (602)
..+.+|.+.+. ..++|+.+|++||||.+|++||++|.|+++++|.+||.|||.||++||.++|.+|++|..|+.+|.+
T Consensus 25 ~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~yN~~~S~iy~dA~eLq~~f~~ 102 (110)
T cd05526 25 CYSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERARRLSRTDSEIYEDAVELQQFFIK 102 (110)
T ss_pred CchHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHHHH
Confidence 45678888766 4578889999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhhh
Q 007472 127 NFENLR 132 (602)
Q Consensus 127 ~~ekL~ 132 (602)
...++.
T Consensus 103 ~rd~~~ 108 (110)
T cd05526 103 IRDELC 108 (110)
T ss_pred HHHHHh
Confidence 877664
No 40
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.61 E-value=6e-16 Score=185.83 Aligned_cols=95 Identities=26% Similarity=0.459 Sum_probs=91.8
Q ss_pred hHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHH
Q 007472 36 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115 (602)
Q Consensus 36 ~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk 115 (602)
|..||.+|..|+.||+|.+||++..+||||+||++||||+||+.|+..+.|.+.++|..||.|||.||.+||.. +.+++
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i~~ 1384 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEIGR 1384 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhhhh
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHhh
Q 007472 116 QARSIHELAKKNFENL 131 (602)
Q Consensus 116 ~Ak~L~e~fek~~ekL 131 (602)
+...|..+|++.|...
T Consensus 1385 ag~~l~~ff~~~~~~~ 1400 (1404)
T KOG1245|consen 1385 AGTCLRRFFHKRWRKK 1400 (1404)
T ss_pred hcchHHHHHHHHHHhh
Confidence 9999999999977654
No 41
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.40 E-value=1.9e-13 Score=154.51 Aligned_cols=96 Identities=29% Similarity=0.494 Sum_probs=91.4
Q ss_pred HHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHH
Q 007472 37 PQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116 (602)
Q Consensus 37 ~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~ 116 (602)
..+|.+|.+|..+|+|.+||+..++||||++|++||||.||+.+|.++.|...+.|+.|+.+||.||+.||+.++.+|+.
T Consensus 612 ~~il~~l~~h~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~~~~y~k~ 691 (720)
T KOG1472|consen 612 QNILDQLQNHGDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGSDTQYYKC 691 (720)
T ss_pred HhHHhhhhcCCccCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCccchheec
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 007472 117 ARSIHELAKKNFENLR 132 (602)
Q Consensus 117 Ak~L~e~fek~~ekL~ 132 (602)
|..|...|...+....
T Consensus 692 ~~~le~~~~~k~~~~i 707 (720)
T KOG1472|consen 692 AQALEKFFLFKLNELI 707 (720)
T ss_pred ccchhhhhcchhhhhh
Confidence 9999999877776553
No 42
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.13 E-value=1.9e-11 Score=111.04 Aligned_cols=75 Identities=20% Similarity=0.158 Sum_probs=62.5
Q ss_pred ChHHHHHHHHhCCCCCCCcCCCCC--CCCCcccccccCccCHHHHHHHHhcC-------CCCCHHHHHHHHHHHHHHhch
Q 007472 35 WDPQRLYQIKSYCCSSSIDFKMDP--EELPDYCEVIEHPMDFGTVRNKLANG-------AYATLEQFEKDVFLICSNAMQ 105 (602)
Q Consensus 35 ~~~eiL~kLk~~~~A~~F~ePVDp--~~lPDY~dIIK~PMDLsTIkkKL~~g-------~Y~SveEF~~DV~LIfsNA~~ 105 (602)
+|.++|+++.+++.+++|.+||++ ..+|||+++||+||||+||++||.+. .|..-+.+.+++..++.||..
T Consensus 7 ~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (114)
T cd05494 7 RVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGRRSP 86 (114)
T ss_pred HHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHccccccccccccccccccccccccccccCc
Confidence 456777888888899999999999 78999999999999999999999987 345555566777777777777
Q ss_pred hcCC
Q 007472 106 YNAP 109 (602)
Q Consensus 106 YN~p 109 (602)
+|..
T Consensus 87 ~~~~ 90 (114)
T cd05494 87 SNIY 90 (114)
T ss_pred cccc
Confidence 7754
No 43
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.91 E-value=1e-09 Score=100.61 Aligned_cols=43 Identities=33% Similarity=0.408 Sum_probs=40.3
Q ss_pred cCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCC
Q 007472 69 EHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 111 (602)
Q Consensus 69 K~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS 111 (602)
-.||||+||++||.+|.|.++++|+.||+|||.||+.||.++.
T Consensus 62 ~y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~dr 104 (119)
T cd05491 62 FYNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRER 104 (119)
T ss_pred EeccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 3689999999999999999999999999999999999998753
No 44
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.83 E-value=2.3e-09 Score=126.41 Aligned_cols=93 Identities=28% Similarity=0.457 Sum_probs=86.3
Q ss_pred HHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHH
Q 007472 38 QRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQA 117 (602)
Q Consensus 38 eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~A 117 (602)
.++.++++.+.+|+|.+||+.+.+|+||.+|++||||.+|.+++....|.+..||.+||++|+.||..||+.++.+.+-|
T Consensus 1389 ~~vs~~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~~k~ 1468 (1563)
T KOG0008|consen 1389 NIVSQMKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAYTKKA 1468 (1563)
T ss_pred hHHHHHHhcchhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCccccccHHH
Confidence 55668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 007472 118 RSIHELAKKNFEN 130 (602)
Q Consensus 118 k~L~e~fek~~ek 130 (602)
+++-++....+.+
T Consensus 1469 ~k~~ev~~~~~~e 1481 (1563)
T KOG0008|consen 1469 RKIGEVGLANLLE 1481 (1563)
T ss_pred HHHHHHHHHHHHH
Confidence 9988877655543
No 45
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.65 E-value=3.1e-08 Score=115.00 Aligned_cols=89 Identities=24% Similarity=0.423 Sum_probs=83.4
Q ss_pred hCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHH
Q 007472 45 SYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELA 124 (602)
Q Consensus 45 ~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~f 124 (602)
.+..+..|...+....+||||+||++||++..|+++|++..|.+..+...|+.++|.||+.||..+|.+|..|..|+.++
T Consensus 1044 ~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~~egs~~y~d~~~l~~~~ 1123 (1157)
T KOG0386|consen 1044 GRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYNEEGSRVYEDAIVLQSVF 1123 (1157)
T ss_pred ccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhhccCCceechhHHHHHHHH
Confidence 34556899999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhC
Q 007472 125 KKNFENLRQ 133 (602)
Q Consensus 125 ek~~ekL~~ 133 (602)
......+..
T Consensus 1124 ~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1124 KSARQEISK 1132 (1157)
T ss_pred hhhHHHHhc
Confidence 988888765
No 46
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.62 E-value=6.9e-08 Score=108.70 Aligned_cols=81 Identities=23% Similarity=0.489 Sum_probs=76.0
Q ss_pred CCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHHHHHH
Q 007472 49 SSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNF 128 (602)
Q Consensus 49 A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~fek~~ 128 (602)
...|.+..+....|+||.+|..||.|..|++|+..+.|.+++.|+.|++||++||..||.+++.+|+++..|+..|....
T Consensus 76 ~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~ena~~~n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 76 FDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTENARLYNRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred chhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhhhcchhhhh
Confidence 46788888899999999999999999999999999999999999999999999999999999999999999999887655
Q ss_pred H
Q 007472 129 E 129 (602)
Q Consensus 129 e 129 (602)
.
T Consensus 156 ~ 156 (629)
T KOG1827|consen 156 D 156 (629)
T ss_pred c
Confidence 3
No 47
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.46 E-value=1.2e-07 Score=108.21 Aligned_cols=73 Identities=30% Similarity=0.487 Sum_probs=67.1
Q ss_pred hCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHH
Q 007472 45 SYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQA 117 (602)
Q Consensus 45 ~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~A 117 (602)
++..+++|.++|+.+..|+||.||+.||||.++.+|+..+.|.+.++|+.|+.+||.||..||...+...+.-
T Consensus 300 ~~~~s~~~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~~~~~~ 372 (720)
T KOG1472|consen 300 RTEHSTPFLEKVSKEDAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEESHGLIEF 372 (720)
T ss_pred ccccccccccCCChhhCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccchhhhhh
Confidence 4678999999999999999999999999999999999999999999999999999999999999866544433
No 48
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.46 E-value=2.1e-08 Score=106.82 Aligned_cols=94 Identities=27% Similarity=0.281 Sum_probs=85.8
Q ss_pred ChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHH
Q 007472 35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF 114 (602)
Q Consensus 35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vy 114 (602)
|..++++++-+.+.-..|..||...-.|+|.+||+.|||+.|++.|++.++|.++.+|..|.++|+.||..||..++.++
T Consensus 23 ~~ehhlrkl~sKdp~q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~~ 102 (418)
T KOG1828|consen 23 DAEHHLRKLPSKDPKQKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVPI 102 (418)
T ss_pred hHHHHHHhccccChhhhhccccchhhccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCcccc
Confidence 34467778878888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 007472 115 RQARSIHELAKKNF 128 (602)
Q Consensus 115 k~Ak~L~e~fek~~ 128 (602)
..|++|..+.-..+
T Consensus 103 ~aaKrL~~v~~~~~ 116 (418)
T KOG1828|consen 103 VAAKRLCPVRLGMT 116 (418)
T ss_pred ccccccchhhcchh
Confidence 99999987764444
No 49
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.44 E-value=2.6e-07 Score=109.61 Aligned_cols=87 Identities=29% Similarity=0.413 Sum_probs=81.5
Q ss_pred HHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHH
Q 007472 38 QRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQA 117 (602)
Q Consensus 38 eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~A 117 (602)
.++.++...+...+|..||+..+++|||.||+.||||.++|+.+....|.+-++|.+|+.||++|..+||++.+.+..++
T Consensus 1268 ~i~n~~~~~~~t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~~~t~~~ 1347 (1563)
T KOG0008|consen 1268 TIINQARSSPNTYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLASLTRQQ 1347 (1563)
T ss_pred HHHHHHhcCCCCcCCCCccchhhccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchHHHHHHH
Confidence 56778888999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHH
Q 007472 118 RSIHELA 124 (602)
Q Consensus 118 k~L~e~f 124 (602)
..+...+
T Consensus 1348 q~mls~~ 1354 (1563)
T KOG0008|consen 1348 QSMLSLC 1354 (1563)
T ss_pred HHHHHHH
Confidence 8775554
No 50
>PF12024 DUF3512: Domain of unknown function (DUF3512); InterPro: IPR021900 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 231 to 249 amino acids in length. This domain is found associated with PF00439 from PFAM.
Probab=98.41 E-value=1.1e-07 Score=96.66 Aligned_cols=126 Identities=19% Similarity=0.248 Sum_probs=90.6
Q ss_pred cccCCCCCCCCCCcccccccccCCCCCCccccccccccccccccc----ccccCCccCCCCccc-cccccccccccccc-
Q 007472 189 RDLGNGTPHLEKSGFTDSSRRFSGSWNDLYTGCLAENKLERNDEV----SLSKGYSMKHGKKQV-VLDENRRNTYKQFH- 262 (602)
Q Consensus 189 ~d~~~~~~~~~k~g~~~~~~~~~g~~~~~~~~~~~~~~~e~~~e~----s~~~g~~~k~G~k~~-~~dE~RR~TY~~~~- 262 (602)
++..++..+..++||...-. +|+...... ...++..+.+++. +.+.|+ +..|-..+ +|.|+||+..+|..
T Consensus 43 r~rl~~~~~~~k~gFlr~~~--DGtt~l~vl-n~~~~~~~~~~~~pV~Lg~l~gk-L~~G~~tL~gfkEdrrnkvtpv~y 118 (245)
T PF12024_consen 43 RDRLNRRLPNSKMGFLRRKK--DGTTTLNVL-NPVDPEAGEEEYRPVDLGSLSGK-LQSGTNTLQGFKEDRRNKVTPVSY 118 (245)
T ss_pred HHHHhhcccccccchhcccC--CCCEEEEEe-ecCCCCCCCCCCceeeHHHhhcc-ccCCcccccccchhhccceeeecc
Confidence 33444455677899986543 676422111 1123332222222 788898 45887777 89999999988842
Q ss_pred -----cc---ccCCceeccccccccceeEeccCCcch--hHHHHHHHHHhhChHHHHHHHHHHhhh
Q 007472 263 -----QS---LRESSVLTTFDADKKQLMTVGLHSEHG--YTRSLARFAANLGPVAWKIAARRIERC 318 (602)
Q Consensus 263 -----~s---~~~~svft~~~~e~K~Lv~VG~~~e~~--YArSLarFaa~lGp~aw~iAs~rI~~~ 318 (602)
.+ -..+|.|+++..|.-+||+..|+.+++ ||.||.+|++++|-++.+||...|...
T Consensus 119 l~YGpfsS~AP~yDStfa~lskeesdLiystYGd~t~~~~a~Si~eFv~~~~~y~~~~vd~LLD~l 184 (245)
T PF12024_consen 119 LNYGPFSSFAPTYDSTFANLSKEESDLIYSTYGDETGVQYAFSIQEFVKDCGSYAYKMVDDLLDVL 184 (245)
T ss_pred cccCccccccccccccccccCcchhhHHHhhcCCccCCchhHHHHHHhhcCchHHHHHHhhhhhhh
Confidence 12 345588888888889999999999998 999999999999999999999888765
No 51
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.21 E-value=3.5e-07 Score=104.41 Aligned_cols=95 Identities=24% Similarity=0.374 Sum_probs=86.4
Q ss_pred HhCCCCCCCcCCCCCC--CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHH
Q 007472 44 KSYCCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIH 121 (602)
Q Consensus 44 k~~~~A~~F~ePVDp~--~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~ 121 (602)
..|.++|.|..||+.. .+++||.+|++|||++||+.++++..|.+..+..+|+..+|.||..||.+...++.++..++
T Consensus 5 ~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~ 84 (640)
T KOG1474|consen 5 RKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSLE 84 (640)
T ss_pred ccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccch
Confidence 4577899999999976 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCC
Q 007472 122 ELAKKNFENLRQDSDDN 138 (602)
Q Consensus 122 e~fek~~ekL~~e~e~~ 138 (602)
..|.+....+..+..+.
T Consensus 85 ~~~~~~~~~~~~~~~d~ 101 (640)
T KOG1474|consen 85 KLFPKKLRSMPSDEEDK 101 (640)
T ss_pred hhcccccccccccccCC
Confidence 99988888776655443
No 52
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.15 E-value=1e-06 Score=94.11 Aligned_cols=82 Identities=17% Similarity=0.190 Sum_probs=75.7
Q ss_pred HHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHH
Q 007472 40 LYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARS 119 (602)
Q Consensus 40 L~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~ 119 (602)
..++..-+...+|..++....+|.|..+|++++|+.|+++|..++.|.| -+|..|+.|||.||++||.++..+|++|+.
T Consensus 217 ~~kl~~~~p~~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyelank 295 (418)
T KOG1828|consen 217 EDKLNRVDPVAYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYELANK 295 (418)
T ss_pred HHHhcccCchhhhcccchhhhcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHHHHh
Confidence 3456666778899999999999999999999999999999999999999 899999999999999999999999999998
Q ss_pred HHH
Q 007472 120 IHE 122 (602)
Q Consensus 120 L~e 122 (602)
+..
T Consensus 296 ~lh 298 (418)
T KOG1828|consen 296 QLH 298 (418)
T ss_pred hhh
Confidence 877
No 53
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=96.59 E-value=0.00083 Score=72.17 Aligned_cols=90 Identities=28% Similarity=0.401 Sum_probs=81.7
Q ss_pred HHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHH
Q 007472 42 QIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIH 121 (602)
Q Consensus 42 kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~ 121 (602)
....+-.+|+|..++.....|+|+++|..+|+++|.+.++..+.|+..++|+.|..++++||..||+....+++.+..+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (371)
T COG5076 274 NSQAHVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANVLE 353 (371)
T ss_pred ccccccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhccchh
Confidence 34556678999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhh
Q 007472 122 ELAKKNFENL 131 (602)
Q Consensus 122 e~fek~~ekL 131 (602)
..+.+.+...
T Consensus 354 ~~~~~~~~~~ 363 (371)
T COG5076 354 DFVIKKTRLI 363 (371)
T ss_pred hhHhhhhhhh
Confidence 8876666544
No 54
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=95.91 E-value=0.015 Score=54.89 Aligned_cols=64 Identities=20% Similarity=0.300 Sum_probs=52.6
Q ss_pred CccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHHHHHHHhhhC
Q 007472 70 HPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQ 133 (602)
Q Consensus 70 ~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~fek~~ekL~~ 133 (602)
.|-||.-|++||+.|.|+++.+|.+||-.|+.-++.-.+...++-++-..++-+|-+.++.+..
T Consensus 58 ~p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~ 121 (131)
T cd05493 58 PPLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFP 121 (131)
T ss_pred CcccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhcc
Confidence 3899999999999999999999999999999988877666555556555566677777777654
No 55
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=91.00 E-value=0.18 Score=59.37 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=51.6
Q ss_pred cccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHHHHH
Q 007472 65 CEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKN 127 (602)
Q Consensus 65 ~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~fek~ 127 (602)
..--.-|..|+.|+.||++..|++.+.|.+|+..|.+||.+|.+.+.-+-..+..|...|.+.
T Consensus 1047 ~~~fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~T 1109 (1113)
T KOG0644|consen 1047 DNRFPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRT 1109 (1113)
T ss_pred CCCCCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhh
Confidence 333456899999999999999999999999999999999999998775555556666555443
No 56
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=84.27 E-value=0.71 Score=56.23 Aligned_cols=63 Identities=21% Similarity=0.227 Sum_probs=57.0
Q ss_pred CCCCCcCCCCCCC-----CCcccccccCccCHHHHHHHHhcCCCCCHHHHHH--HHHHHHHHhchhcCCC
Q 007472 48 CSSSIDFKMDPEE-----LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEK--DVFLICSNAMQYNAPD 110 (602)
Q Consensus 48 ~A~~F~ePVDp~~-----lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~--DV~LIfsNA~~YN~pd 110 (602)
....|..|+++.. +++|..+|+.+||+...-.|+....|.++.+|+. ++.|||.|++.||+..
T Consensus 532 ~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 532 SSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred cccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 3578888888653 5689999999999999999999999999999999 9999999999999974
No 57
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=66.26 E-value=1 Score=52.14 Aligned_cols=74 Identities=11% Similarity=0.048 Sum_probs=66.5
Q ss_pred CCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHH
Q 007472 50 SSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHEL 123 (602)
Q Consensus 50 ~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~ 123 (602)
..|.+-++-+.+++||.+++-+|-+..+.+++..++|.....|..|..++|.|++.|+.....++..+..|.+.
T Consensus 214 er~w~~~dg~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~ 287 (629)
T KOG1827|consen 214 ERLWKLPDGEKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEE 287 (629)
T ss_pred cccccCcccccccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCccccccc
Confidence 45666667778999999999999999999999999999999999999999999999999988888888777654
No 58
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=56.95 E-value=2.9 Score=49.93 Aligned_cols=73 Identities=22% Similarity=0.332 Sum_probs=60.3
Q ss_pred CCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCC--------------C----------CHHH------HHHHHHHH
Q 007472 50 SSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAY--------------A----------TLEQ------FEKDVFLI 99 (602)
Q Consensus 50 ~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y--------------~----------SveE------F~~DV~LI 99 (602)
..|.-++|....|-|+.+..-|.+|+|++..|.+..| . ++.+ ..+-+.+|
T Consensus 84 kqlv~~~d~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i 163 (1113)
T KOG0644|consen 84 KQLVPMLDKPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSI 163 (1113)
T ss_pred HHhccCcCCCCCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCccc
Confidence 3566788888899999999999999999999998776 2 3444 67788899
Q ss_pred HHHhchhcCCCCHHHHHHHHHHHH
Q 007472 100 CSNAMQYNAPDTIYFRQARSIHEL 123 (602)
Q Consensus 100 fsNA~~YN~pdS~Vyk~Ak~L~e~ 123 (602)
-.||+.++.|++ +++-++.++++
T Consensus 164 ~~at~~~akPgt-mvqkmk~ikrL 186 (1113)
T KOG0644|consen 164 GCATFSIAKPGT-MVQKMKNIKRL 186 (1113)
T ss_pred ccceeeecCcHH-HHHHHHHHHHH
Confidence 999999999999 77777766665
No 59
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=33.73 E-value=65 Score=27.16 Aligned_cols=27 Identities=11% Similarity=0.364 Sum_probs=23.9
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 007472 75 GTVRNKLANGAYATLEQFEKDVFLICS 101 (602)
Q Consensus 75 sTIkkKL~~g~Y~SveEF~~DV~LIfs 101 (602)
..|+++++.|.|.|..|+++|..+++.
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999887665
No 60
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=31.98 E-value=1.4e+02 Score=26.65 Aligned_cols=48 Identities=17% Similarity=0.240 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 007472 84 GAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENL 131 (602)
Q Consensus 84 g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~fek~~ekL 131 (602)
..|-|..-|...+..|-.....++..+..+..+|..|++.|+|.|++.
T Consensus 4 ~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~ 51 (101)
T PF14372_consen 4 SSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDC 51 (101)
T ss_pred CCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 457888888888888877777777667889999999999999999754
No 61
>PF07882 Fucose_iso_N2: L-fucose isomerase, second N-terminal domain; InterPro: IPR012889 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta- sheets with surrounding alpha helices. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=29.03 E-value=21 Score=35.85 Aligned_cols=55 Identities=20% Similarity=0.416 Sum_probs=38.0
Q ss_pred CCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCC
Q 007472 56 MDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 111 (602)
Q Consensus 56 VDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS 111 (602)
||++-+.+|+-+=..-+|...|.+|++.+.|.. +||++-+..+-.||..|.....
T Consensus 18 vd~~f~~~ylGmr~E~VD~~Ei~RR~e~~iyD~-~E~e~A~~W~~~~~~~g~d~np 72 (181)
T PF07882_consen 18 VDPDFFQEYLGMRVEYVDMSEIIRRMEEGIYDE-EEFEKALAWVKENCKEGDDKNP 72 (181)
T ss_dssp --HHHHHHCT--EEEEE-THHHHHHHHCT-S-H-HHHHHHHHHHHHHSEE---TST
T ss_pred cCHHHHHHHhCCCceeecHHHHHHHHHccCCCH-HHHHHHHHHHHHhCCcCCCCCc
Confidence 344445567777778899999999999999976 8999999999999998877653
No 62
>PRK10991 fucI L-fucose isomerase; Provisional
Probab=28.58 E-value=71 Score=37.35 Aligned_cols=68 Identities=13% Similarity=0.160 Sum_probs=51.2
Q ss_pred HHHHHHHHhCCCC-------CCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhch
Q 007472 37 PQRLYQIKSYCCS-------SSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQ 105 (602)
Q Consensus 37 ~eiL~kLk~~~~A-------~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~ 105 (602)
..++..|+..... .+.---||+..+-+|+-|=-.++|+..|.+|++.+.|.. ++|.+.+..+-.||..
T Consensus 164 a~aV~~LRg~syl~IG~rpmGf~ts~vne~~l~~~fGI~ve~VDmsEIirR~~~~~~d~-eE~e~al~wlk~~~~~ 238 (588)
T PRK10991 164 GLAVASMKGKSYLSIGGVSMGIAGSIVDHNFFESYLGMRVEAVDMTELRRRIDQKIYDE-EELEMALAWAKKNCKE 238 (588)
T ss_pred HHHHHHhcCCeEEEECCccCCccccccCHHHHHHHhCCEEEEeCHHHHHHHHHhccCCH-HHHHHHHHHHHHhccc
Confidence 3455555555432 222234555567789998899999999999999999988 6999999999999864
No 63
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=21.82 E-value=4.3e+02 Score=30.06 Aligned_cols=95 Identities=14% Similarity=0.065 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCCcCChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHH
Q 007472 11 TVKRERRLFLVRIQQITTKGLSWNWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLE 90 (602)
Q Consensus 11 ~~krErRk~~~rl~~i~~~~L~~~~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~Sve 90 (602)
.||||.++..+..+.+....++.+--.+|+.++..++...+ .|+-.+...-.-+ =|...++|+++
T Consensus 24 ~RKkElKrNKK~Rq~VR~a~lk~KDp~qi~~~m~kldem~~--~p~q~~~~~lnEk------vLkdkrKK~rE------- 88 (487)
T KOG4672|consen 24 ARKKELKRNKKDRQKVRAAVLKYKDPDQITSKMEKLDEMEY--NPFQIDVLRLNEK------VLKDKRKKRRE------- 88 (487)
T ss_pred HHHHHhhhhHHHHHHHHHhhhccCCHHHHHHHHHhhccccc--CccccchhhhHHH------HHHHHHHHHHH-------
Confidence 46777777777777787777777766789888887763322 2211111110001 13344455543
Q ss_pred HHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHHHHH
Q 007472 91 QFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKN 127 (602)
Q Consensus 91 EF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~fek~ 127 (602)
-|.+-++ .|...+..+|+.-++++-.+++.
T Consensus 89 tfer~~r-------lye~~~p~~~~~L~r~eveye~k 118 (487)
T KOG4672|consen 89 TFERGKR-------LYEATEPVMFSHLQRREVEYEDK 118 (487)
T ss_pred HHHHHHH-------hhcccChHHHHHHHHHhhhhhhh
Confidence 3333332 37667778887777666555443
No 64
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=20.35 E-value=1.3e+02 Score=26.26 Aligned_cols=27 Identities=11% Similarity=0.389 Sum_probs=22.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 007472 75 GTVRNKLANGAYATLEQFEKDVFLICS 101 (602)
Q Consensus 75 sTIkkKL~~g~Y~SveEF~~DV~LIfs 101 (602)
.-|+.++..|.|.|..|+++|...++.
T Consensus 15 ~~i~~~V~sG~Y~s~SEvvR~aLRlle 41 (80)
T PF03693_consen 15 AFIEEQVASGRYSSASEVVREALRLLE 41 (80)
T ss_dssp HHHHHHHCTTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 459999999999999999999765554
Done!