Query 007472
Match_columns 602
No_of_seqs 248 out of 1414
Neff 4.5
Searched_HMMs 29240
Date Tue Mar 26 02:41:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007472.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007472hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1e6i_A Transcriptional activat 99.9 1E-25 3.6E-30 203.3 11.2 101 33-133 15-115 (121)
2 3g0l_A Hwalp4, bromodomain adj 99.9 1.5E-25 5E-30 200.6 12.0 99 35-133 17-115 (117)
3 4alg_A Bromodomain-containing 99.9 1.4E-25 4.7E-30 210.7 11.7 102 36-137 37-140 (154)
4 3d7c_A General control of amin 99.9 1.7E-25 5.6E-30 199.0 11.3 98 35-132 11-108 (112)
5 2d9e_A Peregrin; four-helix bu 99.9 2.5E-25 8.7E-30 201.0 11.9 100 35-134 11-110 (121)
6 2oss_A HUNK1 protein, bromodom 99.9 3.5E-25 1.2E-29 201.6 11.3 99 36-134 26-126 (127)
7 3nxb_A CAT eye syndrome critic 99.9 4.3E-25 1.5E-29 197.3 11.3 96 35-130 20-115 (116)
8 2grc_A Probable global transcr 99.9 2.8E-25 9.7E-30 202.5 9.7 105 36-140 16-127 (129)
9 3jvl_A Bromodomain-containing 99.9 1.4E-25 4.7E-30 201.6 7.5 101 35-135 13-118 (120)
10 2dat_A Possible global transcr 99.9 5.5E-25 1.9E-29 199.0 11.4 98 36-133 18-121 (123)
11 2i7k_A Bromodomain-containing 99.9 6E-25 2E-29 197.8 11.3 99 36-134 13-111 (117)
12 2ouo_A HUNK1 protein, bromodom 99.9 4.7E-25 1.6E-29 201.5 9.6 99 35-133 26-129 (130)
13 3rcw_A Bromodomain-containing 99.9 1.6E-24 5.6E-29 198.4 12.4 99 36-134 18-116 (135)
14 2yyn_A Transcription intermedi 99.9 1.5E-24 5E-29 199.4 12.0 103 34-137 23-127 (135)
15 3hme_A Bromodomain-containing 99.9 1.3E-24 4.5E-29 196.7 11.4 96 36-131 18-113 (123)
16 3q2e_A Bromodomain and WD repe 99.9 1.4E-24 4.9E-29 196.1 11.3 101 35-135 14-115 (123)
17 3mb4_A Protein polybromo-1; PB 99.9 1.3E-24 4.3E-29 196.7 10.7 98 36-133 20-123 (124)
18 3mb3_A PH-interacting protein; 99.9 1.8E-24 6.1E-29 198.2 11.3 100 35-134 25-125 (135)
19 3iu5_A Protein polybromo-1; PB 99.9 1.6E-24 5.6E-29 193.7 10.3 100 35-134 9-114 (116)
20 3p1f_A CREB-binding protein; s 99.9 2.4E-24 8.1E-29 193.2 10.7 98 36-133 16-116 (119)
21 3k2j_A Protein polybromo-1; PB 99.9 3.9E-24 1.3E-28 195.7 10.5 91 46-136 38-128 (130)
22 3ljw_A Protein polybromo-1; al 99.9 5E-24 1.7E-28 191.8 10.6 97 37-133 14-116 (120)
23 3fkm_X Signaling protein; brom 99.9 7.7E-24 2.6E-28 201.0 11.3 98 35-132 25-124 (166)
24 3mqm_A Probable histone-lysine 99.9 7.8E-24 2.7E-28 191.8 10.4 96 38-133 16-117 (126)
25 2ri7_A Nucleosome-remodeling f 99.9 9.1E-24 3.1E-28 199.8 9.7 97 36-132 77-173 (174)
26 3tlp_A Protein polybromo-1; PB 99.9 4.1E-23 1.4E-27 192.2 12.9 92 46-137 46-137 (150)
27 3uv4_A Second bromodomain of h 99.9 2.3E-23 8E-28 196.5 9.7 93 42-134 41-133 (158)
28 3dai_A ATPase family AAA domai 99.9 2.3E-22 7.9E-27 183.4 11.1 94 36-129 15-112 (130)
29 3o36_A Transcription intermedi 99.9 2.3E-22 8E-27 192.3 10.3 96 36-132 86-183 (184)
30 3uv5_A Transcription initiatio 99.9 1.7E-21 5.6E-26 196.6 11.6 97 36-132 19-115 (265)
31 3u5n_A E3 ubiquitin-protein li 99.8 2.4E-21 8.2E-26 188.8 11.2 99 35-134 85-203 (207)
32 2dkw_A Hypothetical protein KI 99.8 1.3E-21 4.5E-26 179.4 8.7 90 35-129 16-109 (131)
33 2ro1_A Transcription intermedi 99.8 9.9E-22 3.4E-26 189.9 7.9 97 35-136 80-181 (189)
34 3uv5_A Transcription initiatio 99.8 3.2E-21 1.1E-25 194.5 10.0 93 42-134 148-240 (265)
35 3aad_A Transcription initiatio 99.8 3.9E-21 1.3E-25 196.7 7.3 98 35-132 51-148 (292)
36 3aad_A Transcription initiatio 99.8 9.8E-21 3.3E-25 193.7 9.9 92 42-133 181-272 (292)
37 2r0y_A Chromatin structure-rem 99.8 1.5E-20 5.3E-25 194.1 9.0 87 45-131 177-263 (311)
38 2r10_A Chromatin structure-rem 99.8 2.3E-20 7.9E-25 196.1 9.6 86 45-130 227-312 (361)
39 2r10_A Chromatin structure-rem 99.7 1.4E-18 4.7E-23 182.7 6.5 95 36-132 83-180 (361)
40 2r0y_A Chromatin structure-rem 99.7 2.3E-18 7.8E-23 178.0 6.8 84 47-132 46-130 (311)
41 3iu6_A Protein polybromo-1; PB 99.6 1.7E-15 5.9E-20 141.7 9.4 86 47-136 29-114 (147)
42 3lqh_A Histone-lysine N-methyl 99.4 4E-13 1.4E-17 129.7 6.9 87 38-135 82-168 (183)
43 1dum_A Magainin 2; antibiotic, 47.3 0.86 2.9E-05 30.3 -3.1 17 318-334 5-21 (26)
44 3fke_A Polymerase cofactor VP3 26.9 16 0.00056 32.9 0.6 17 317-333 101-117 (129)
45 3ks4_A Polymerase cofactor VP3 21.6 22 0.00075 33.7 0.4 20 314-333 153-172 (184)
No 1
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.93 E-value=1e-25 Score=203.33 Aligned_cols=101 Identities=24% Similarity=0.413 Sum_probs=96.8
Q ss_pred cCChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCH
Q 007472 33 WNWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI 112 (602)
Q Consensus 33 ~~~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~ 112 (602)
...|..+|.+|++++.+++|.+|||+..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.
T Consensus 15 ~~~~~~il~~l~~~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~ 94 (121)
T 1e6i_A 15 DAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTS 94 (121)
T ss_dssp HHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHcCCCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 34577999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhC
Q 007472 113 YFRQARSIHELAKKNFENLRQ 133 (602)
Q Consensus 113 Vyk~Ak~L~e~fek~~ekL~~ 133 (602)
+|++|..|++.|++.+++++.
T Consensus 95 i~~~A~~L~~~f~~~~~~~p~ 115 (121)
T 1e6i_A 95 YYKYANRLEKFFNNKVKEIPE 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHHHHHHHHHHHccc
Confidence 999999999999999998854
No 2
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.93 E-value=1.5e-25 Score=200.56 Aligned_cols=99 Identities=26% Similarity=0.412 Sum_probs=95.8
Q ss_pred ChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHH
Q 007472 35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF 114 (602)
Q Consensus 35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vy 114 (602)
.|..+|..|.+++.+++|.+|||+..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.+|
T Consensus 17 ~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~ 96 (117)
T 3g0l_A 17 LCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIG 96 (117)
T ss_dssp HHHHHHHHHHTSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCSSSHHH
T ss_pred HHHHHHHHHHhCCCchhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhC
Q 007472 115 RQARSIHELAKKNFENLRQ 133 (602)
Q Consensus 115 k~Ak~L~e~fek~~ekL~~ 133 (602)
++|..|++.|++.|+++..
T Consensus 97 ~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 97 RAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 9999999999999998754
No 3
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.92 E-value=1.4e-25 Score=210.68 Aligned_cols=102 Identities=21% Similarity=0.360 Sum_probs=96.1
Q ss_pred hHHHHHHHHhCCCCCCCcCCCCCC--CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHH
Q 007472 36 DPQRLYQIKSYCCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIY 113 (602)
Q Consensus 36 ~~eiL~kLk~~~~A~~F~ePVDp~--~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~V 113 (602)
|..+|..|++++.+++|.+|||+. .+||||++|++||||+||++||+++.|.++++|+.||+|||.||++||++++.|
T Consensus 37 ~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~i 116 (154)
T 4alg_A 37 HKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDI 116 (154)
T ss_dssp HHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 346788999999999999999998 699999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCC
Q 007472 114 FRQARSIHELAKKNFENLRQDSDD 137 (602)
Q Consensus 114 yk~Ak~L~e~fek~~ekL~~e~e~ 137 (602)
|++|+.|++.|++.|+++..+..+
T Consensus 117 ~~~A~~L~~~f~~~~~~l~~~~~e 140 (154)
T 4alg_A 117 VLMAQTLEKIFLQKVASMPQEEQE 140 (154)
T ss_dssp HHHHHHHHHHHHHHHTTSCSSCCB
T ss_pred HHHHHHHHHHHHHHHHHCCchhcc
Confidence 999999999999999999866443
No 4
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.92 E-value=1.7e-25 Score=199.02 Aligned_cols=98 Identities=29% Similarity=0.360 Sum_probs=94.5
Q ss_pred ChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHH
Q 007472 35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF 114 (602)
Q Consensus 35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vy 114 (602)
.|..+|.+|++++.+++|.+|||+..+||||++|++||||+||++||+++.|.++++|.+||+|||.||+.||++++.+|
T Consensus 11 ~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~ 90 (112)
T 3d7c_A 11 TLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEYC 90 (112)
T ss_dssp HHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH
T ss_pred HHHHHHHHHHcCCCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 007472 115 RQARSIHELAKKNFENLR 132 (602)
Q Consensus 115 k~Ak~L~e~fek~~ekL~ 132 (602)
++|+.|++.|++.++++.
T Consensus 91 ~~A~~L~~~f~~~~~~~~ 108 (112)
T 3d7c_A 91 RCASALEKFFYFKLKEGG 108 (112)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHCC
Confidence 999999999999999875
No 5
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.92 E-value=2.5e-25 Score=200.98 Aligned_cols=100 Identities=31% Similarity=0.487 Sum_probs=95.7
Q ss_pred ChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHH
Q 007472 35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF 114 (602)
Q Consensus 35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vy 114 (602)
.|..+|.+|++++.+++|.+|||+..+||||++|++||||+||++||+++.|.++++|.+||+|||.||+.||++++.+|
T Consensus 11 ~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~ 90 (121)
T 2d9e_A 11 LLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFY 90 (121)
T ss_dssp HHHHHHHHHHHHCSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH
T ss_pred HHHHHHHHHHcCCccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhCC
Q 007472 115 RQARSIHELAKKNFENLRQD 134 (602)
Q Consensus 115 k~Ak~L~e~fek~~ekL~~e 134 (602)
++|..|++.|++.|++++..
T Consensus 91 ~~A~~L~~~~~~~l~~~~~~ 110 (121)
T 2d9e_A 91 RAAVRLREQGGAVLRQARRQ 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988753
No 6
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.92 E-value=3.5e-25 Score=201.57 Aligned_cols=99 Identities=23% Similarity=0.359 Sum_probs=94.0
Q ss_pred hHHHHHHHHhCCCCCCCcCCCCCC--CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHH
Q 007472 36 DPQRLYQIKSYCCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIY 113 (602)
Q Consensus 36 ~~eiL~kLk~~~~A~~F~ePVDp~--~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~V 113 (602)
|..+|..|++++.+++|.+|||+. .+||||++|++||||+||++||+++.|.++++|..||+|||.||++||++++.+
T Consensus 26 ~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i 105 (127)
T 2oss_A 26 LRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDI 105 (127)
T ss_dssp HHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 346788999999999999999986 799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhCC
Q 007472 114 FRQARSIHELAKKNFENLRQD 134 (602)
Q Consensus 114 yk~Ak~L~e~fek~~ekL~~e 134 (602)
|++|..|++.|++.|++++.+
T Consensus 106 ~~~A~~L~~~f~~~~~~lp~~ 126 (127)
T 2oss_A 106 VLMAEALEKLFLQKINELPTE 126 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCC
Confidence 999999999999999998754
No 7
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.92 E-value=4.3e-25 Score=197.25 Aligned_cols=96 Identities=23% Similarity=0.328 Sum_probs=92.8
Q ss_pred ChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHH
Q 007472 35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF 114 (602)
Q Consensus 35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vy 114 (602)
.|..+|..|++++.+++|.+|||+..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.++
T Consensus 20 ~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~ 99 (116)
T 3nxb_A 20 AMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGESSEYT 99 (116)
T ss_dssp HHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhCCCcHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 007472 115 RQARSIHELAKKNFEN 130 (602)
Q Consensus 115 k~Ak~L~e~fek~~ek 130 (602)
++|..|++.|++.|.+
T Consensus 100 ~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 100 KMSDNLERCFHRAMMK 115 (116)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998874
No 8
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.92 E-value=2.8e-25 Score=202.54 Aligned_cols=105 Identities=23% Similarity=0.463 Sum_probs=95.0
Q ss_pred hHHHHHHHHhCC-------CCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcC
Q 007472 36 DPQRLYQIKSYC-------CSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNA 108 (602)
Q Consensus 36 ~~eiL~kLk~~~-------~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~ 108 (602)
|..+|..|+++. .+++|.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||+
T Consensus 16 ~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~yN~ 95 (129)
T 2grc_A 16 MKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNL 95 (129)
T ss_dssp HHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 567788888765 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhCCCCCCCc
Q 007472 109 PDTIYFRQARSIHELAKKNFENLRQDSDDNEP 140 (602)
Q Consensus 109 pdS~Vyk~Ak~L~e~fek~~ekL~~e~e~~E~ 140 (602)
+++.+|++|..|++.|++.++++..+.+.+++
T Consensus 96 ~~s~i~~~A~~L~~~f~~~~~~l~~~~~~~~~ 127 (129)
T 2grc_A 96 EGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGE 127 (129)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred CCCHHHHHHHHHHHHHHHHHHHccCCCccccc
Confidence 99999999999999999999999876554443
No 9
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.92 E-value=1.4e-25 Score=201.59 Aligned_cols=101 Identities=29% Similarity=0.494 Sum_probs=94.3
Q ss_pred ChHHHHHHHHhCCC---CCCCcCCCCCCC--CCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCC
Q 007472 35 WDPQRLYQIKSYCC---SSSIDFKMDPEE--LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 109 (602)
Q Consensus 35 ~~~eiL~kLk~~~~---A~~F~ePVDp~~--lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~p 109 (602)
+|..+|.+|.+++. +++|.+|||+.. +||||++|++||||+||++||+++.|.++++|..||+|||.||++||++
T Consensus 13 ~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 92 (120)
T 3jvl_A 13 CCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYNPP 92 (120)
T ss_dssp HHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 46688888888777 899999999987 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhCCC
Q 007472 110 DTIYFRQARSIHELAKKNFENLRQDS 135 (602)
Q Consensus 110 dS~Vyk~Ak~L~e~fek~~ekL~~e~ 135 (602)
++.+|++|+.|++.|++.|++++.+.
T Consensus 93 ~s~~~~~A~~L~~~f~~~~~~~p~~~ 118 (120)
T 3jvl_A 93 DHEVVAMARKLQDVFEMRFAKMPDEP 118 (120)
T ss_dssp TSHHHHHHHHHHHHHHHHHTTCCC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 99999999999999999999998654
No 10
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.92 E-value=5.5e-25 Score=198.96 Aligned_cols=98 Identities=24% Similarity=0.430 Sum_probs=92.9
Q ss_pred hHHHHHHHHhCC------CCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCC
Q 007472 36 DPQRLYQIKSYC------CSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 109 (602)
Q Consensus 36 ~~eiL~kLk~~~------~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~p 109 (602)
|..+|..|+++. .+++|.+||+...+||||++|++||||+||++||+++.|.++++|.+||+|||.||++||++
T Consensus 18 ~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 97 (123)
T 2dat_A 18 MNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLE 97 (123)
T ss_dssp HHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 567788888875 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhC
Q 007472 110 DTIYFRQARSIHELAKKNFENLRQ 133 (602)
Q Consensus 110 dS~Vyk~Ak~L~e~fek~~ekL~~ 133 (602)
++.+|++|..|++.|++.+++++.
T Consensus 98 ~s~i~~~A~~L~~~f~~~~~~~ps 121 (123)
T 2dat_A 98 GSQIYEDSIVLQSVFKSARQSGPS 121 (123)
T ss_dssp TSHHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999998864
No 11
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.92 E-value=6e-25 Score=197.78 Aligned_cols=99 Identities=31% Similarity=0.562 Sum_probs=94.4
Q ss_pred hHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHH
Q 007472 36 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115 (602)
Q Consensus 36 ~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk 115 (602)
|..+|..|++++.+++|.+|||+..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.+|+
T Consensus 13 l~~il~~L~~~~~~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~s~i~~ 92 (117)
T 2i7k_A 13 LNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYK 92 (117)
T ss_dssp HHHHHHHHHTSSGGGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSCSSSSHHH
T ss_pred HHHHHHHHHhCcccHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 55788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhCC
Q 007472 116 QARSIHELAKKNFENLRQD 134 (602)
Q Consensus 116 ~Ak~L~e~fek~~ekL~~e 134 (602)
+|+.|++.|++.++...-+
T Consensus 93 ~A~~L~~~f~~~~~~~~~~ 111 (117)
T 2i7k_A 93 AAKKLLHSGMKILSQERLE 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876543
No 12
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.91 E-value=4.7e-25 Score=201.49 Aligned_cols=99 Identities=29% Similarity=0.486 Sum_probs=93.5
Q ss_pred ChHHHHHHHHhCCC---CCCCcCCCCCC--CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCC
Q 007472 35 WDPQRLYQIKSYCC---SSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 109 (602)
Q Consensus 35 ~~~eiL~kLk~~~~---A~~F~ePVDp~--~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~p 109 (602)
+|..+|.+|.+++. +++|.+|||+. .+||||++|++||||+||++||+++.|.++++|..||+|||.||++||++
T Consensus 26 ~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~ 105 (130)
T 2ouo_A 26 CCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPP 105 (130)
T ss_dssp HHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 47789999988764 79999999987 49999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhC
Q 007472 110 DTIYFRQARSIHELAKKNFENLRQ 133 (602)
Q Consensus 110 dS~Vyk~Ak~L~e~fek~~ekL~~ 133 (602)
++.+|++|..|++.|++.|++++.
T Consensus 106 ~s~i~~~A~~L~~~f~~~~~~lp~ 129 (130)
T 2ouo_A 106 DHEVVAMARKLQDVFEMRFAKMPD 129 (130)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999874
No 13
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.91 E-value=1.6e-24 Score=198.39 Aligned_cols=99 Identities=32% Similarity=0.537 Sum_probs=95.2
Q ss_pred hHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHH
Q 007472 36 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115 (602)
Q Consensus 36 ~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk 115 (602)
|..+|..|++++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.+|+
T Consensus 18 l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~ 97 (135)
T 3rcw_A 18 LRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYR 97 (135)
T ss_dssp HHHHHHHHHHTCTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred HHHHHHHHHhCCcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhCC
Q 007472 116 QARSIHELAKKNFENLRQD 134 (602)
Q Consensus 116 ~Ak~L~e~fek~~ekL~~e 134 (602)
+|..|++.|++.++.++.+
T Consensus 98 ~A~~L~~~~~~~~~~~~~~ 116 (135)
T 3rcw_A 98 AAVRLRDQGGVVLRQARRE 116 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987654
No 14
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.91 E-value=1.5e-24 Score=199.40 Aligned_cols=103 Identities=22% Similarity=0.343 Sum_probs=96.8
Q ss_pred CChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHhchhcCCCC
Q 007472 34 NWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLAN--GAYATLEQFEKDVFLICSNAMQYNAPDT 111 (602)
Q Consensus 34 ~~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~--g~Y~SveEF~~DV~LIfsNA~~YN~pdS 111 (602)
.+|..+|..|++++.+++|.+||+. .+||||++|++||||+||++||++ +.|.++++|.+||+|||.||++||++++
T Consensus 23 ~~c~~il~~L~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s 101 (135)
T 2yyn_A 23 RKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDS 101 (135)
T ss_dssp HHHHHHHHHHHTSGGGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHhCccchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 3577999999999999999999998 799999999999999999999998 5899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCC
Q 007472 112 IYFRQARSIHELAKKNFENLRQDSDD 137 (602)
Q Consensus 112 ~Vyk~Ak~L~e~fek~~ekL~~e~e~ 137 (602)
.+|++|..|++.|++.++++..+.+-
T Consensus 102 ~i~~~A~~L~~~f~~~~~~~~~~~~~ 127 (135)
T 2yyn_A 102 EVANAGIKLENYFEELLKNLYPEKRF 127 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCC
Confidence 99999999999999999999766543
No 15
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.91 E-value=1.3e-24 Score=196.65 Aligned_cols=96 Identities=32% Similarity=0.580 Sum_probs=92.4
Q ss_pred hHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHH
Q 007472 36 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115 (602)
Q Consensus 36 ~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk 115 (602)
|..+|..|++++.+++|.+|||+..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.+|+
T Consensus 18 l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~ 97 (123)
T 3hme_A 18 LEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYK 97 (123)
T ss_dssp HHHHHHHHHTTCTTCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred HHHHHHHHHhCCccHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 007472 116 QARSIHELAKKNFENL 131 (602)
Q Consensus 116 ~Ak~L~e~fek~~ekL 131 (602)
+|+.|++.|++.|++.
T Consensus 98 ~A~~L~~~~~~~~~~~ 113 (123)
T 3hme_A 98 LAKKILHAGFKMMSKE 113 (123)
T ss_dssp HHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988654
No 16
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.91 E-value=1.4e-24 Score=196.06 Aligned_cols=101 Identities=30% Similarity=0.427 Sum_probs=96.1
Q ss_pred ChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCC-CCHH
Q 007472 35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP-DTIY 113 (602)
Q Consensus 35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~p-dS~V 113 (602)
.|..+|..|++++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++ ++.+
T Consensus 14 ~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~~s~i 93 (123)
T 3q2e_A 14 QCKELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPNKRSKI 93 (123)
T ss_dssp HHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTTSHH
T ss_pred HHHHHHHHHHhCCCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
Confidence 366889999999999999999999999999999999999999999999999999999999999999999999996 8999
Q ss_pred HHHHHHHHHHHHHHHHhhhCCC
Q 007472 114 FRQARSIHELAKKNFENLRQDS 135 (602)
Q Consensus 114 yk~Ak~L~e~fek~~ekL~~e~ 135 (602)
|++|..|++.|++.++++..+.
T Consensus 94 ~~~A~~L~~~f~~~~~~~~~~~ 115 (123)
T 3q2e_A 94 YSMTLRLSALFEEKMKKISSDF 115 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887543
No 17
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.91 E-value=1.3e-24 Score=196.71 Aligned_cols=98 Identities=22% Similarity=0.407 Sum_probs=91.8
Q ss_pred hHHHHHHHHh------CCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCC
Q 007472 36 DPQRLYQIKS------YCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 109 (602)
Q Consensus 36 ~~eiL~kLk~------~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~p 109 (602)
|.++|..|++ ++.+++|.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++
T Consensus 20 ~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 99 (124)
T 3mb4_A 20 LNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEP 99 (124)
T ss_dssp HHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4467777777 5667999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhC
Q 007472 110 DTIYFRQARSIHELAKKNFENLRQ 133 (602)
Q Consensus 110 dS~Vyk~Ak~L~e~fek~~ekL~~ 133 (602)
++.+|++|..|++.|++.|+++..
T Consensus 100 ~s~i~~~A~~L~~~f~~~~~~l~~ 123 (124)
T 3mb4_A 100 ESLIYKDALVLHKVLLETRRDLEG 123 (124)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999864
No 18
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.91 E-value=1.8e-24 Score=198.16 Aligned_cols=100 Identities=28% Similarity=0.394 Sum_probs=95.5
Q ss_pred ChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCC-CCHH
Q 007472 35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP-DTIY 113 (602)
Q Consensus 35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~p-dS~V 113 (602)
.|..+|..|.+++.+++|.+|||+..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++ ++.|
T Consensus 25 ~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~~s~i 104 (135)
T 3mb3_A 25 QCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPSKRSRI 104 (135)
T ss_dssp HHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTTCHH
T ss_pred HHHHHHHHHHhCCCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999997 8999
Q ss_pred HHHHHHHHHHHHHHHHhhhCC
Q 007472 114 FRQARSIHELAKKNFENLRQD 134 (602)
Q Consensus 114 yk~Ak~L~e~fek~~ekL~~e 134 (602)
|++|..|++.|++.|+++..+
T Consensus 105 ~~~A~~L~~~f~~~~~~~~~~ 125 (135)
T 3mb3_A 105 YSMSLRLSAFFEEHISSVLSD 125 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887543
No 19
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.91 E-value=1.6e-24 Score=193.67 Aligned_cols=100 Identities=22% Similarity=0.335 Sum_probs=93.9
Q ss_pred ChHHHHHHHHhCC------CCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcC
Q 007472 35 WDPQRLYQIKSYC------CSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNA 108 (602)
Q Consensus 35 ~~~eiL~kLk~~~------~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~ 108 (602)
.|.++|..|+++. .+++|.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||+
T Consensus 9 ~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 88 (116)
T 3iu5_A 9 VCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYYK 88 (116)
T ss_dssp HHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 4667888888774 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhCC
Q 007472 109 PDTIYFRQARSIHELAKKNFENLRQD 134 (602)
Q Consensus 109 pdS~Vyk~Ak~L~e~fek~~ekL~~e 134 (602)
+++.+|++|..|++.|++.++++.+.
T Consensus 89 ~~s~~~~~A~~L~~~f~~~~~~l~~~ 114 (116)
T 3iu5_A 89 PDSPEYKAACKLWDLYLRTRNEFVQK 114 (116)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998764
No 20
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.91 E-value=2.4e-24 Score=193.24 Aligned_cols=98 Identities=26% Similarity=0.447 Sum_probs=91.1
Q ss_pred hHHHHHHHHh-CCCCCCCcCCCCCC--CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCH
Q 007472 36 DPQRLYQIKS-YCCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI 112 (602)
Q Consensus 36 ~~eiL~kLk~-~~~A~~F~ePVDp~--~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~ 112 (602)
|..+|.+|.+ ++.+++|.+|||+. ++||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.
T Consensus 16 l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~ 95 (119)
T 3p1f_A 16 LMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSR 95 (119)
T ss_dssp HHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 3466777776 67999999999998 79999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhC
Q 007472 113 YFRQARSIHELAKKNFENLRQ 133 (602)
Q Consensus 113 Vyk~Ak~L~e~fek~~ekL~~ 133 (602)
+|++|..|++.|++.++++.+
T Consensus 96 i~~~A~~L~~~f~~~~~~~~~ 116 (119)
T 3p1f_A 96 VYKFCSKLAEVFEQEIDPVMQ 116 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988753
No 21
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.90 E-value=3.9e-24 Score=195.65 Aligned_cols=91 Identities=24% Similarity=0.474 Sum_probs=86.4
Q ss_pred CCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHHH
Q 007472 46 YCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAK 125 (602)
Q Consensus 46 ~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~fe 125 (602)
+..+++|.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.+|++|..|++.|+
T Consensus 38 ~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~ 117 (130)
T 3k2j_A 38 QLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVMQ 117 (130)
T ss_dssp CBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 44599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCC
Q 007472 126 KNFENLRQDSD 136 (602)
Q Consensus 126 k~~ekL~~e~e 136 (602)
+.|+++....+
T Consensus 118 ~~~~~l~~~~e 128 (130)
T 3k2j_A 118 AKKKELARRDD 128 (130)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHhccc
Confidence 99999876543
No 22
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.90 E-value=5e-24 Score=191.76 Aligned_cols=97 Identities=27% Similarity=0.446 Sum_probs=90.2
Q ss_pred HHHHHHHHhCCC------CCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCC
Q 007472 37 PQRLYQIKSYCC------SSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 110 (602)
Q Consensus 37 ~eiL~kLk~~~~------A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pd 110 (602)
..+|..|.++.. +++|.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||+++
T Consensus 14 ~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 93 (120)
T 3ljw_A 14 EQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPG 93 (120)
T ss_dssp HHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 355666666655 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhC
Q 007472 111 TIYFRQARSIHELAKKNFENLRQ 133 (602)
Q Consensus 111 S~Vyk~Ak~L~e~fek~~ekL~~ 133 (602)
+.+|++|..|++.|++.|+++..
T Consensus 94 s~~~~~A~~L~~~f~~~~~~i~~ 116 (120)
T 3ljw_A 94 SQVFKDANSIKKIFYMKKAEIEH 116 (120)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999998853
No 23
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.90 E-value=7.7e-24 Score=201.01 Aligned_cols=98 Identities=27% Similarity=0.459 Sum_probs=91.1
Q ss_pred ChHHHHHHHHhCCCCCCCcCCCCCC--CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCH
Q 007472 35 WDPQRLYQIKSYCCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI 112 (602)
Q Consensus 35 ~~~eiL~kLk~~~~A~~F~ePVDp~--~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~ 112 (602)
.|..+|..|++++.+++|.+|||+. .+||||++|++||||+||++||+++.|.++++|..||+|||.||++||++++.
T Consensus 25 ~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~ 104 (166)
T 3fkm_X 25 LANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLYNTSNSV 104 (166)
T ss_dssp HHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHSSCTTSH
T ss_pred HHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 3568899999999999999999987 69999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 007472 113 YFRQARSIHELAKKNFENLR 132 (602)
Q Consensus 113 Vyk~Ak~L~e~fek~~ekL~ 132 (602)
||++|+.|++.|++.|+++.
T Consensus 105 i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 105 VAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999998764
No 24
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.90 E-value=7.8e-24 Score=191.82 Aligned_cols=96 Identities=21% Similarity=0.279 Sum_probs=88.5
Q ss_pred HHHHHHHhC------CCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCC
Q 007472 38 QRLYQIKSY------CCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 111 (602)
Q Consensus 38 eiL~kLk~~------~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS 111 (602)
.++..|+++ ..+++|.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++
T Consensus 16 ~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s 95 (126)
T 3mqm_A 16 EICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKYYGRKS 95 (126)
T ss_dssp HHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 555555554 45899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhC
Q 007472 112 IYFRQARSIHELAKKNFENLRQ 133 (602)
Q Consensus 112 ~Vyk~Ak~L~e~fek~~ekL~~ 133 (602)
.+|++|..|++.|++.++++..
T Consensus 96 ~~~~~A~~L~~~f~~~~~~~~~ 117 (126)
T 3mqm_A 96 PVGRDVCRLRKAYYNARHEASA 117 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987654
No 25
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.89 E-value=9.1e-24 Score=199.76 Aligned_cols=97 Identities=23% Similarity=0.418 Sum_probs=93.6
Q ss_pred hHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHH
Q 007472 36 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115 (602)
Q Consensus 36 ~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk 115 (602)
+..+|..|++++.+++|.+|||+..+|||+++|++||||+||++||+++.|.++++|.+||+|||.||++||++++.+|+
T Consensus 77 l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~ 156 (174)
T 2ri7_A 77 LKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQ 156 (174)
T ss_dssp HHHHHHHHHTSGGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred HHHHHHHHHhhhhhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 007472 116 QARSIHELAKKNFENLR 132 (602)
Q Consensus 116 ~Ak~L~e~fek~~ekL~ 132 (602)
+|+.|++.|++.+++++
T Consensus 157 ~A~~L~~~f~~~~~~~~ 173 (174)
T 2ri7_A 157 CAEVLESFFVQKLKGFK 173 (174)
T ss_dssp HHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999998875
No 26
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.89 E-value=4.1e-23 Score=192.23 Aligned_cols=92 Identities=26% Similarity=0.398 Sum_probs=85.5
Q ss_pred CCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHHH
Q 007472 46 YCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAK 125 (602)
Q Consensus 46 ~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~fe 125 (602)
+..+++|..||+...+||||++|++||||+||++||+++.|.++++|+.||+|||.||+.||++++.||++|+.|++.|+
T Consensus 46 ~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~ 125 (150)
T 3tlp_A 46 RRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEKLLK 125 (150)
T ss_dssp CBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 33489999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCC
Q 007472 126 KNFENLRQDSDD 137 (602)
Q Consensus 126 k~~ekL~~e~e~ 137 (602)
+.|+++....++
T Consensus 126 ~~~~~l~~~pd~ 137 (150)
T 3tlp_A 126 EKRKELGPLPDD 137 (150)
T ss_dssp HHHHHHCCC---
T ss_pred HHHHHccCCCCh
Confidence 999999765443
No 27
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.89 E-value=2.3e-23 Score=196.47 Aligned_cols=93 Identities=27% Similarity=0.498 Sum_probs=88.8
Q ss_pred HHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHH
Q 007472 42 QIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIH 121 (602)
Q Consensus 42 kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~ 121 (602)
+++.++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|..||+|||.||++||++++.||++|..|+
T Consensus 41 kl~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~ 120 (158)
T 3uv4_A 41 KMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIV 120 (158)
T ss_dssp TTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCC
Q 007472 122 ELAKKNFENLRQD 134 (602)
Q Consensus 122 e~fek~~ekL~~e 134 (602)
+.|++.++++...
T Consensus 121 ~~~~~~l~e~~~~ 133 (158)
T 3uv4_A 121 NVCYQTLTEYDEH 133 (158)
T ss_dssp HHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887644
No 28
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.87 E-value=2.3e-22 Score=183.39 Aligned_cols=94 Identities=28% Similarity=0.409 Sum_probs=88.0
Q ss_pred hHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHH--
Q 007472 36 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIY-- 113 (602)
Q Consensus 36 ~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~V-- 113 (602)
|..+|..|..++.+++|.+|||+..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.+
T Consensus 15 l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~ 94 (130)
T 3dai_A 15 LRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDRDPGDR 94 (130)
T ss_dssp HHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHCCSSSHHHH
T ss_pred HHHHHHHHHcCCccHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCChhHH
Confidence 457788999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred --HHHHHHHHHHHHHHHH
Q 007472 114 --FRQARSIHELAKKNFE 129 (602)
Q Consensus 114 --yk~Ak~L~e~fek~~e 129 (602)
+..|..|++.+...++
T Consensus 95 ~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 95 LIRHRACALRDTAYAIIK 112 (130)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 7888999888888875
No 29
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.87 E-value=2.3e-22 Score=192.30 Aligned_cols=96 Identities=24% Similarity=0.387 Sum_probs=91.1
Q ss_pred hHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHhchhcCCCCHH
Q 007472 36 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLAN--GAYATLEQFEKDVFLICSNAMQYNAPDTIY 113 (602)
Q Consensus 36 ~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~--g~Y~SveEF~~DV~LIfsNA~~YN~pdS~V 113 (602)
|..+|..|++++.+++|.+||+.. +||||++|++||||+||++||++ +.|.++++|.+||+|||.||+.||++++.|
T Consensus 86 c~~il~~l~~~~~s~~F~~Pv~~~-~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~v 164 (184)
T 3o36_A 86 CERLLLFLYCHEMSLAFQDPVPLT-VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEV 164 (184)
T ss_dssp HHHHHHHHHHSTTCHHHHSCCCTT-STTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHhchhhhhhccccccC-CCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 557899999999999999999965 89999999999999999999998 789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 007472 114 FRQARSIHELAKKNFENLR 132 (602)
Q Consensus 114 yk~Ak~L~e~fek~~ekL~ 132 (602)
|++|+.|++.|++.++++.
T Consensus 165 ~~~a~~L~~~f~~~~~~~~ 183 (184)
T 3o36_A 165 ANAGIKLENYFEELLKNLY 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 9999999999999998763
No 30
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.85 E-value=1.7e-21 Score=196.58 Aligned_cols=97 Identities=20% Similarity=0.391 Sum_probs=94.0
Q ss_pred hHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHH
Q 007472 36 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115 (602)
Q Consensus 36 ~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk 115 (602)
|..+|..|++++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|+.||+|||+||+.||++++.+|+
T Consensus 19 l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~~ 98 (265)
T 3uv5_A 19 LESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQ 98 (265)
T ss_dssp HHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHcCCCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCCCCChHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 007472 116 QARSIHELAKKNFENLR 132 (602)
Q Consensus 116 ~Ak~L~e~fek~~ekL~ 132 (602)
+|+.|++.|++.++++.
T Consensus 99 ~A~~l~~~~~~~~~~~~ 115 (265)
T 3uv5_A 99 ISQSMLDLCDEKLKEKE 115 (265)
T ss_dssp HHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998764
No 31
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.85 E-value=2.4e-21 Score=188.78 Aligned_cols=99 Identities=22% Similarity=0.353 Sum_probs=93.8
Q ss_pred ChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhc---CCCCCHHHHHHHHHHHHHHhchhcC---
Q 007472 35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLAN---GAYATLEQFEKDVFLICSNAMQYNA--- 108 (602)
Q Consensus 35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~---g~Y~SveEF~~DV~LIfsNA~~YN~--- 108 (602)
.|..+|..|++++.+++|.+||+. .+||||+||++||||+||++||++ +.|.++++|..||+|||.||++||+
T Consensus 85 ~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s 163 (207)
T 3u5n_A 85 KCERLLLYLYCHELSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEMMK 163 (207)
T ss_dssp HHHHHHHHHHTSTTCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHHHHHCCCcc
Confidence 356889999999999999999987 799999999999999999999997 7999999999999999999999999
Q ss_pred --------------CCCHHHHHHHHHHHHHHHHHHhhhCC
Q 007472 109 --------------PDTIYFRQARSIHELAKKNFENLRQD 134 (602)
Q Consensus 109 --------------pdS~Vyk~Ak~L~e~fek~~ekL~~e 134 (602)
+++.++++|.+|+..|++.|+++..+
T Consensus 164 ~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~ 203 (207)
T 3u5n_A 164 VVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSD 203 (207)
T ss_dssp HHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999998755
No 32
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=179.39 Aligned_cols=90 Identities=29% Similarity=0.397 Sum_probs=84.2
Q ss_pred ChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCH--
Q 007472 35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI-- 112 (602)
Q Consensus 35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~-- 112 (602)
+|..+|..|+.++.+++|.+| +||||++|++||||+||++||+++.|.++++|..||+|||.||+.||+++|.
T Consensus 16 ~~~~il~~l~~~~~~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~~~ 90 (131)
T 2dkw_A 16 FLRDVTKRLATDKRFNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPDKDPGD 90 (131)
T ss_dssp HHHHHHHHHHHSGGGCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHSCCCSSTTH
T ss_pred HHHHHHHHHHhCccchhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCChhH
Confidence 366889999999999999998 8999999999999999999999999999999999999999999999999984
Q ss_pred --HHHHHHHHHHHHHHHHH
Q 007472 113 --YFRQARSIHELAKKNFE 129 (602)
Q Consensus 113 --Vyk~Ak~L~e~fek~~e 129 (602)
++.+|..|++.|...++
T Consensus 91 ~~i~~~A~~L~~~~~~~l~ 109 (131)
T 2dkw_A 91 KIIRHRACTLKDTAHAIIA 109 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 67899999999988874
No 33
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.84 E-value=9.9e-22 Score=189.91 Aligned_cols=97 Identities=10% Similarity=0.116 Sum_probs=90.0
Q ss_pred ChHHHHHHHHhCCCCCCCcCCCCCCCCCccccccc--CccCHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHhchhcCC
Q 007472 35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIE--HPMDFGTVRNKLANG---AYATLEQFEKDVFLICSNAMQYNAP 109 (602)
Q Consensus 35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK--~PMDLsTIkkKL~~g---~Y~SveEF~~DV~LIfsNA~~YN~p 109 (602)
.|..+|.+|+.|+.+++|.+||+ |+||+||+ +||||+||++||+++ .|.++++|+.||+|||+||++|| +
T Consensus 80 ~c~~iL~~l~~~~~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~~~yN-~ 154 (189)
T 2ro1_A 80 KCERVLLALFCHEPCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLT-E 154 (189)
T ss_dssp HHHHHHHHHHHSTTHHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHHHHHHC-C
T ss_pred HHHHHHhhcccCccchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHC-C
Confidence 35688999999999999999998 67999998 899999999999999 99999999999999999999999 5
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhCCCC
Q 007472 110 DTIYFRQARSIHELAKKNFENLRQDSD 136 (602)
Q Consensus 110 dS~Vyk~Ak~L~e~fek~~ekL~~e~e 136 (602)
++.+|++|+.|++.|++.|+++..+.+
T Consensus 155 ~s~~~~~a~~L~~~Fe~~~~~~~~~~~ 181 (189)
T 2ro1_A 155 DKADVQSIIGLQRFFETRMNEAFGDTK 181 (189)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHHTTTSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 888899999999999999999976543
No 34
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.84 E-value=3.2e-21 Score=194.47 Aligned_cols=93 Identities=27% Similarity=0.498 Sum_probs=89.0
Q ss_pred HHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHH
Q 007472 42 QIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIH 121 (602)
Q Consensus 42 kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~ 121 (602)
+++.++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.+|++|..|+
T Consensus 148 ~l~~~~~~~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~s~~~~~A~~l~ 227 (265)
T 3uv5_A 148 KMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIV 227 (265)
T ss_dssp TTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred HHHhhhhhHHHhCCCChhHhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCC
Q 007472 122 ELAKKNFENLRQD 134 (602)
Q Consensus 122 e~fek~~ekL~~e 134 (602)
+.|++.++++...
T Consensus 228 ~~~~~~~~~~~~~ 240 (265)
T 3uv5_A 228 NVCYQTLTEYDEH 240 (265)
T ss_dssp HHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887643
No 35
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.83 E-value=3.9e-21 Score=196.66 Aligned_cols=98 Identities=19% Similarity=0.381 Sum_probs=93.2
Q ss_pred ChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHH
Q 007472 35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF 114 (602)
Q Consensus 35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vy 114 (602)
.|..+|.+|++++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|..||+|||+||++||++++.+|
T Consensus 51 ~~~~il~~l~~~~~a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~ 130 (292)
T 3aad_A 51 ILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLT 130 (292)
T ss_dssp HHHHHHHHHSSSTTCGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCSSSHHH
T ss_pred HHHHHHHHHHhCCcchhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 007472 115 RQARSIHELAKKNFENLR 132 (602)
Q Consensus 115 k~Ak~L~e~fek~~ekL~ 132 (602)
.+|..|++.|++.++++.
T Consensus 131 ~~A~~L~~~~~~~~~~~~ 148 (292)
T 3aad_A 131 QISQSMLDLCDEKLKEKE 148 (292)
T ss_dssp HHHTHHHHTTTTTGGGSH
T ss_pred HHHHHHHHHHHhhhhcch
Confidence 999999999988877653
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.82 E-value=9.8e-21 Score=193.74 Aligned_cols=92 Identities=27% Similarity=0.502 Sum_probs=88.5
Q ss_pred HHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHH
Q 007472 42 QIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIH 121 (602)
Q Consensus 42 kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~ 121 (602)
+|++++.+++|.+|||...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.+|++|..|+
T Consensus 181 ~l~~~~~s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~L~ 260 (292)
T 3aad_A 181 KMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIV 260 (292)
T ss_dssp TGGGSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHH
T ss_pred hhhcCcchhHHHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhC
Q 007472 122 ELAKKNFENLRQ 133 (602)
Q Consensus 122 e~fek~~ekL~~ 133 (602)
+.|++.++++..
T Consensus 261 ~~~~~~~~~~~~ 272 (292)
T 3aad_A 261 NVCYQTLTEYDE 272 (292)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
No 37
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.81 E-value=1.5e-20 Score=194.14 Aligned_cols=87 Identities=24% Similarity=0.464 Sum_probs=83.9
Q ss_pred hCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHH
Q 007472 45 SYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELA 124 (602)
Q Consensus 45 ~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~f 124 (602)
.|..+++|.+|||+..+||||+||++||||+||++||+++.|.++++|..||+|||.||++||++++.||++|..|++.|
T Consensus 177 ~~~~s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f 256 (311)
T 2r0y_A 177 KVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYF 256 (311)
T ss_dssp SSCTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred CCccHHHHhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 007472 125 KKNFENL 131 (602)
Q Consensus 125 ek~~ekL 131 (602)
++.+++.
T Consensus 257 ~~~~~~~ 263 (311)
T 2r0y_A 257 NYLIQKE 263 (311)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999873
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.81 E-value=2.3e-20 Score=196.12 Aligned_cols=86 Identities=24% Similarity=0.481 Sum_probs=83.6
Q ss_pred hCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHH
Q 007472 45 SYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELA 124 (602)
Q Consensus 45 ~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~f 124 (602)
.|..+++|.+|||+..+||||+||++||||+||++||+++.|.++++|+.||+|||.||+.||++++.||++|..|++.|
T Consensus 227 ~~~~s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f 306 (361)
T 2r10_A 227 KVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYF 306 (361)
T ss_dssp SSCTTGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred CCcchhcccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 007472 125 KKNFEN 130 (602)
Q Consensus 125 ek~~ek 130 (602)
++.+++
T Consensus 307 ~~~~~~ 312 (361)
T 2r10_A 307 NYLIQK 312 (361)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999987
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.73 E-value=1.4e-18 Score=182.69 Aligned_cols=95 Identities=17% Similarity=0.162 Sum_probs=83.6
Q ss_pred hHHHHHHHHh--CCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHhchhcCCCCH
Q 007472 36 DPQRLYQIKS--YCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYA-TLEQFEKDVFLICSNAMQYNAPDTI 112 (602)
Q Consensus 36 ~~eiL~kLk~--~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~-SveEF~~DV~LIfsNA~~YN~pdS~ 112 (602)
|..+|..+.+ ...+++|.+||+...+||||+||++||||+||++|| ..|. ++++|+.||+|||.||+.||++++.
T Consensus 83 ~~~~l~~l~~~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~yN~~~s~ 160 (361)
T 2r10_A 83 ISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEYDSL 160 (361)
T ss_dssp HHHHHHHHHHHTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHHBCSSSH
T ss_pred HHHHHHHHHHcCCcccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhcCCCCCH
Confidence 3455555543 345799999999999999999999999999999998 5555 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 007472 113 YFRQARSIHELAKKNFENLR 132 (602)
Q Consensus 113 Vyk~Ak~L~e~fek~~ekL~ 132 (602)
||++|..|+++|++.|.+.+
T Consensus 161 i~~~a~~l~~~~~~~~~k~k 180 (361)
T 2r10_A 161 IVKNSMQVVMLIEFEVLKAK 180 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999888653
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.73 E-value=2.3e-18 Score=178.00 Aligned_cols=84 Identities=18% Similarity=0.212 Sum_probs=78.6
Q ss_pred CCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHHH
Q 007472 47 CCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYA-TLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAK 125 (602)
Q Consensus 47 ~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~-SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~fe 125 (602)
..+++|.+||+...+||||+||++||||+||++|| ..|. ++++|..||+|||.||++||++++.||++|++|+++|+
T Consensus 46 ~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~~~ 123 (311)
T 2r0y_A 46 DIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIE 123 (311)
T ss_dssp HHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred chhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999 5565 89999999999999999999999999999999999999
Q ss_pred HHHHhhh
Q 007472 126 KNFENLR 132 (602)
Q Consensus 126 k~~ekL~ 132 (602)
+.|.+.+
T Consensus 124 ~~~~k~k 130 (311)
T 2r0y_A 124 FEVLKAK 130 (311)
T ss_dssp HHHHHHH
T ss_pred HHHhhcc
Confidence 9988763
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.60 E-value=1.7e-15 Score=141.69 Aligned_cols=86 Identities=21% Similarity=0.440 Sum_probs=79.4
Q ss_pred CCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHHHH
Q 007472 47 CCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKK 126 (602)
Q Consensus 47 ~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~fek 126 (602)
..+.+|.+.++.. |+||. ++||+|.+|++||+.+.|+++++|..||.|||.||++||.++|.||.+|..|+.+|.+
T Consensus 29 ~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~NAr~yN~e~S~IyeDAv~Lq~~f~~ 104 (147)
T 3iu6_A 29 CYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIK 104 (147)
T ss_dssp BGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH
T ss_pred cchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 3567899987777 89998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCC
Q 007472 127 NFENLRQDSD 136 (602)
Q Consensus 127 ~~ekL~~e~e 136 (602)
.++++..+.+
T Consensus 105 ~r~eL~~~g~ 114 (147)
T 3iu6_A 105 IRDELCKNGE 114 (147)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHhhCCC
Confidence 9998866543
No 42
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.38 E-value=4e-13 Score=129.74 Aligned_cols=87 Identities=16% Similarity=0.221 Sum_probs=78.1
Q ss_pred HHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHH
Q 007472 38 QRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQA 117 (602)
Q Consensus 38 eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~A 117 (602)
++|..|..++.+++|.+. .++.||||.||++||+.+.|.++++|..||.|||.||..||.+++++.+++
T Consensus 82 ~vl~~L~~~~~s~~~~~y-----------~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~~~~e~~~ag 150 (183)
T 3lqh_A 82 QVLTALLNSRTTSHLLRY-----------RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQPEIKKAN 150 (183)
T ss_dssp HHHHHHHTCHHHHHHHTC-----------CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHhccccHhhhhh-----------hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCChhhhhhh
Confidence 677888889999999773 259999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCC
Q 007472 118 RSIHELAKKNFENLRQDS 135 (602)
Q Consensus 118 k~L~e~fek~~ekL~~e~ 135 (602)
..|+.+|++.++++..-.
T Consensus 151 ~~l~~~f~~~l~~vfpwf 168 (183)
T 3lqh_A 151 SMVKSFFIRQMERVFPWF 168 (183)
T ss_dssp HHHHHHHHHHHHHHCTTS
T ss_pred hHHHHHHHHHHHHHCCCC
Confidence 999999999999987554
No 43
>1dum_A Magainin 2; antibiotic, dimer, amphipathic helix, membrane, vesicle, bilayer, antimicrobial protein; NMR {Synthetic} SCOP: j.4.1.1 PDB: 2mag_A
Probab=47.34 E-value=0.86 Score=30.30 Aligned_cols=17 Identities=35% Similarity=0.601 Sum_probs=12.3
Q ss_pred hCCCCCccCCcccccCC
Q 007472 318 CLPAGVRFGPGWVVEND 334 (602)
Q Consensus 318 ~Lp~g~~FG~GWVge~e 334 (602)
-|-.--|||..||||-.
T Consensus 5 ylhsakkfgkawvgeim 21 (26)
T 1dum_A 5 YLHSAKKFGKAWVGEIM 21 (26)
T ss_dssp TTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHH
Confidence 34444689999999853
No 44
>3fke_A Polymerase cofactor VP35; RNA binding domain, coiled coil, interferon antiviral system evasion, RNA replication, RNA-binding; 1.40A {Zaire ebolavirus - mayinga} PDB: 3l25_A 3l26_A 3l28_A 3l27_A 3l29_A 3l2a_A
Probab=26.86 E-value=16 Score=32.88 Aligned_cols=17 Identities=29% Similarity=0.628 Sum_probs=14.8
Q ss_pred hhCCCCCccCCcccccC
Q 007472 317 RCLPAGVRFGPGWVVEN 333 (602)
Q Consensus 317 ~~Lp~g~~FG~GWVge~ 333 (602)
|.+|||-|.|+|||--|
T Consensus 101 R~vPp~Pki~rGWVciy 117 (129)
T 3fke_A 101 RPVPPSPKIDRGWVCVF 117 (129)
T ss_dssp ECCCSSCCGGGTEEEEE
T ss_pred CCCCCCCccCcceEEEE
Confidence 78899999999999655
No 45
>3ks4_A Polymerase cofactor VP35; RNA-binding protein, protein-RNA complex, interferon, HOST cytoplasm, interferon antiviral system evasion; 2.40A {Reston ebolavirus} PDB: 3ks8_A
Probab=21.63 E-value=22 Score=33.71 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=16.3
Q ss_pred HHhhhCCCCCccCCcccccC
Q 007472 314 RIERCLPAGVRFGPGWVVEN 333 (602)
Q Consensus 314 rI~~~Lp~g~~FG~GWVge~ 333 (602)
+=-|.+|||-|.|||||--|
T Consensus 153 ksLR~vPp~PKidrGWVciy 172 (184)
T 3ks4_A 153 KSLRPAPPSPKIDRGWVCLF 172 (184)
T ss_dssp TTEEECCSSCCGGGTEEEEE
T ss_pred hccCCCCCCCccCcceEEEE
Confidence 33478899999999999755
Done!