BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007473
(602 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 193 bits (490), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 163/576 (28%), Positives = 254/576 (44%), Gaps = 43/576 (7%)
Query: 26 ADVKEMFKKYAEGGTHMTAEQLWQFLVEVQGHGGVSIEDAEQIVDQVLQRWH--HIARFT 83
A++ F++ A ++ E+L FL H E + +++R+ A+
Sbjct: 78 AEIDRAFEEAAGSAETLSVERLVTFL----QHQQREEEAGPALALSLIERYEPSETAK-A 132
Query: 84 RRSLTVEDFHHYLFSTDLNP-PLGNQ-VYQDMTAPLSHYFIYTGHNSYLIGNQFSSDCSD 141
+R +T + F YL S D N L ++ VYQDM PLSHY + + HN+YL+ +Q + S
Sbjct: 133 QRQMTKDGFLMYLLSADGNAFSLAHRRVYQDMDQPLSHYLVSSSHNTYLLEDQLTGPSST 192
Query: 142 VPITKALKRGVRVIELDLWPNSAKDDVLVLHGRTLTTPVELIKCLRAIKENAFSASPYPV 201
+AL +G R +ELD W + + ++ HG T T+ + LRAI++ AF ASPYPV
Sbjct: 193 EAYIRALCKGCRCLELDCW-DGPNQEPIIYHGYTFTSKILFCDVLRAIRDYAFKASPYPV 251
Query: 202 ILTFEDHLNPHLQAKVAQMITQTFGAMLY-SPESECLKEFPSPEELKYRIIISTKPPKER 260
IL+ E+H + Q +A+ + G +L P PSPE+LK +I++ K
Sbjct: 252 ILSLENHCSLEQQRVMARHLRAILGPILLDQPLDGVTTSLPSPEQLKGKILLKGKKLGGL 311
Query: 261 REKKGINNRKDISAKGKISTEDVLGKEPPDLTANQADDERSDYDTSEHNQCDEDNTEACD 320
G N G E D++ E D Q + +
Sbjct: 312 LPAGGEN-----------------GSEATDVSDEVEAAEMEDEAVRSQVQ-HKPKEDKLK 353
Query: 321 RVTRASGTLAYKRLIAIHNGKLKGCLKEELNLQLEKVRRISLSEQKFEKAAVSYGTDVVR 380
V S + Y + + G + S SE + + G VR
Sbjct: 354 LVPELSDMIIYCKSVHFGGFSSPGTSGQAF------YEMASFSESRALRLLQESGNGFVR 407
Query: 381 FTQKNILRIYPKQTRVNSSNYKPMIGWIHGAQMVALNMQGYGKSLWLMHGMFRANAGCGY 440
+ RIYP R +SSNY P+ W G Q+VALN Q G + + G F+ N GCGY
Sbjct: 408 HNVSCLSRIYPAGWRTDSSNYSPVEMWNGGCQIVALNFQTPGPEMDVYLGCFQDNGGCGY 467
Query: 441 VKKPNFLLKEGPDDQVFDPKE--KLPVKKTLKVKAYMGDGWYLDFKQMDCKFWSPPQFYT 498
V KP FL + F+ + + P + +++ + G L + P+
Sbjct: 468 VLKPAFLRDP---NTTFNSRALTQGPWWRPERLRVRIISGQQLPKVNKNKNSIVDPKVI- 523
Query: 499 RVGIAGVPADXXXXXXXXXVDN-WTPVWDDEFTFPLTIPEMALLRVEVRKYSMPEKDEFA 557
V I GV D +N + P WD EF F +T+P++AL+R V Y K++F
Sbjct: 524 -VEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFI 582
Query: 558 GQTCLPVFQLRPGIHAVPLFDRKGEELGSARLLMRF 593
GQ+ +P L+ G V L + G++ SA L ++
Sbjct: 583 GQSTIPWNSLKQGYRHVHLLSKNGDQHPSATLFVKI 618
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 193 bits (490), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 163/576 (28%), Positives = 254/576 (44%), Gaps = 43/576 (7%)
Query: 26 ADVKEMFKKYAEGGTHMTAEQLWQFLVEVQGHGGVSIEDAEQIVDQVLQRWH--HIARFT 83
A++ F++ A ++ E+L FL H E + +++R+ A+
Sbjct: 80 AEIDRAFEEAAGSAETLSVERLVTFL----QHQQREEEAGPALALSLIERYEPSETAK-A 134
Query: 84 RRSLTVEDFHHYLFSTDLNP-PLGNQ-VYQDMTAPLSHYFIYTGHNSYLIGNQFSSDCSD 141
+R +T + F YL S D N L ++ VYQDM PLSHY + + HN+YL+ +Q + S
Sbjct: 135 QRQMTKDGFLMYLLSADGNAFSLAHRRVYQDMDQPLSHYLVSSSHNTYLLEDQLTGPSST 194
Query: 142 VPITKALKRGVRVIELDLWPNSAKDDVLVLHGRTLTTPVELIKCLRAIKENAFSASPYPV 201
+AL +G R +ELD W + + ++ HG T T+ + LRAI++ AF ASPYPV
Sbjct: 195 EAYIRALCKGCRCLELDCW-DGPNQEPIIYHGYTFTSKILFCDVLRAIRDYAFKASPYPV 253
Query: 202 ILTFEDHLNPHLQAKVAQMITQTFGAMLY-SPESECLKEFPSPEELKYRIIISTKPPKER 260
IL+ E+H + Q +A+ + G +L P PSPE+LK +I++ K
Sbjct: 254 ILSLENHCSLEQQRVMARHLRAILGPILLDQPLDGVTTSLPSPEQLKGKILLKGKKLGGL 313
Query: 261 REKKGINNRKDISAKGKISTEDVLGKEPPDLTANQADDERSDYDTSEHNQCDEDNTEACD 320
G N G E D++ E D Q + +
Sbjct: 314 LPAGGEN-----------------GSEATDVSDEVEAAEMEDEAVRSQVQ-HKPKEDKLK 355
Query: 321 RVTRASGTLAYKRLIAIHNGKLKGCLKEELNLQLEKVRRISLSEQKFEKAAVSYGTDVVR 380
V S + Y + + G + S SE + + G VR
Sbjct: 356 LVPELSDMIIYCKSVHFGGFSSPGTSGQAF------YEMASFSESRALRLLQESGNGFVR 409
Query: 381 FTQKNILRIYPKQTRVNSSNYKPMIGWIHGAQMVALNMQGYGKSLWLMHGMFRANAGCGY 440
+ RIYP R +SSNY P+ W G Q+VALN Q G + + G F+ N GCGY
Sbjct: 410 HNVSCLSRIYPAGWRTDSSNYSPVEMWNGGCQIVALNFQTPGPEMDVYLGCFQDNGGCGY 469
Query: 441 VKKPNFLLKEGPDDQVFDPKE--KLPVKKTLKVKAYMGDGWYLDFKQMDCKFWSPPQFYT 498
V KP FL + F+ + + P + +++ + G L + P+
Sbjct: 470 VLKPAFLRDP---NTTFNSRALTQGPWWRPERLRVRIISGQQLPKVNKNKNSIVDPKVI- 525
Query: 499 RVGIAGVPADXXXXXXXXXVDN-WTPVWDDEFTFPLTIPEMALLRVEVRKYSMPEKDEFA 557
V I GV D +N + P WD EF F +T+P++AL+R V Y K++F
Sbjct: 526 -VEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFI 584
Query: 558 GQTCLPVFQLRPGIHAVPLFDRKGEELGSARLLMRF 593
GQ+ +P L+ G V L + G++ SA L ++
Sbjct: 585 GQSTIPWNSLKQGYRHVHLLSKNGDQHPSATLFVKI 620
>pdb|2FJU|B Chain B, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
pdb|2ZKM|X Chain X, Crystal Structure Of Phospholipase C Beta 2
Length = 799
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 156/525 (29%), Positives = 240/525 (45%), Gaps = 77/525 (14%)
Query: 109 VYQDMTAPLSHYFIYTGHNSYLIGNQFSSDCSDVPITKALKRGVRVIELDLWPNSAKDD- 167
++ DMT PL+HYFI + HN+YL QFS S + L G R +ELD W D+
Sbjct: 310 LHHDMTQPLNHYFINSSHNTYLTAGQFSGLSSAEMYRQVLLSGCRCVELDCWKGKPPDEE 369
Query: 168 VLVLHGRTLTTPVELIKCLRAIKENAFSASPYPVILTFEDHLN-PHLQAKVAQMITQTFG 226
++ HG T+TT + + + AI E+AF SPYP+IL+FE+H++ P QAK+A+ FG
Sbjct: 370 PIITHGFTMTTDIFFKEAIEAIAESAFKTSPYPIILSFENHVDSPRQQAKMAEYCRTIFG 429
Query: 227 AMLYSPESECLKEFP--------SPEELKYRIIISTKPPKERREKKGINNRKDISAKGKI 278
ML + E L++FP SPE+L+ +I+I K N ++ K
Sbjct: 430 DMLLT---EPLEKFPLKPGVPLPSPEDLRGKILIKNKK----------NQFSGPTSSSKD 476
Query: 279 STEDVLGKEPPDLTANQA----------------DDERSDYDTSEHNQCDEDNTEACDRV 322
+ + G PP A A ++E + D E + D A V
Sbjct: 477 TGGEAEGSSPPSAPAVWAGEEGTELEEEEVEEEEEEESGNLDEEEIKKMQSDEGTAGLEV 536
Query: 323 TRASGTLAYKRLIAIHNG-KLKGCLKEELNLQLEKVRRIS-LSEQK----FEKAAVSYGT 376
T AY+ + ++ N + + E + Q + IS +E K KA+V +
Sbjct: 537 T------AYEEMSSLVNYIQPTKFVSFEFSAQKNRSYVISSFTELKAYDLLSKASVQF-- 588
Query: 377 DVVRFTQKNILRIYPKQTRVNSSNYKPMIGWIHGAQMVALNMQGYGKSLWLMHGMFRANA 436
V + ++ + RIYPK TR++SSNY P + W G QMVALN Q + +F N
Sbjct: 589 --VDYNKRQMSRIYPKGTRMDSSNYMPQMFWNAGCQMVALNFQTMDLPMQQNMAVFEFNG 646
Query: 437 GCGYVKKPNFLLKEGPDDQVFDP--KEKLPVKKTLKVKAYMGDGWYLDFKQMDCKFWSPP 494
GY+ K F+ + PD Q F+P +++ V + + G +L + +
Sbjct: 647 QSGYLLKHEFMRR--PDKQ-FNPFSVDRIDVVVATTLSITVISGQFLSERSV-------- 695
Query: 495 QFYTRVGIAGVPAD---XXXXXXXXXVDNWTPVWDDE-FTF-PLTIPEMALLRVEVRKYS 549
+ Y V + G+P D ++ PVW +E F F + +PE+A LRV V
Sbjct: 696 RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV---- 751
Query: 550 MPEKDEFAGQTCLPVFQLRPGIHAVPLFDRKGEELGSARLLMRFE 594
M E ++F G +P+ L G H + L L L + E
Sbjct: 752 MEEGNKFLGHRIIPINALNSGYHHLCLHSESNMPLTMPALFIFLE 796
>pdb|3OHM|B Chain B, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 885
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 143/300 (47%), Gaps = 34/300 (11%)
Query: 36 AEGGTHMTAEQLWQFLVEVQGHGGVS------IEDAEQIVDQVLQRWHHIARFTRR-SLT 88
A+G ++T EQL F+ + Q ++ + ++ + +++++ +F R ++
Sbjct: 234 AKGKPYLTLEQLMDFINQKQRDPRLNEVLYPPLRPSQARL--LIEKYEPNQQFLERDQMS 291
Query: 89 VEDFHHYLFSTD--LNPPLGNQVYQDMTAPLSHYFIYTGHNSYLIGNQFSSDCSDVPITK 146
+E F YL + + P + DMT PLS YFI + HN+YL Q + S +
Sbjct: 292 MEGFSRYLGGEENGILPLEALDLSTDMTQPLSAYFINSSHNTYLTAGQLAGTSSVEMYRQ 351
Query: 147 ALKRGVRVIELDLWPNSA-KDDVLVLHGRTLTTPVELIKCLRAIKENAFSASPYPVILTF 205
AL G R +ELD+W +++ + HG T+TT V L L AI E AF SPYPVIL+F
Sbjct: 352 ALLWGCRCVELDVWKGRPPEEEPFITHGFTMTTEVPLRDVLEAIAETAFKTSPYPVILSF 411
Query: 206 EDHLN-PHLQAKVAQMITQTFG-AMLYSPESECLKE----FPSPEELKYRIIISTKPPKE 259
E+H++ QAK+A+ FG A+L P + PSP++L RI++ K
Sbjct: 412 ENHVDSAKQQAKMAEYCRSIFGDALLIEPLDKYPLAPGVPLPSPQDLMGRILVKNK---- 467
Query: 260 RREKKGINNRKDISAKGKISTEDVLGKEPPDLTANQADDERSDYDTSEHNQCDEDNTEAC 319
R SA G D G++ P +N A E S Q ++++C
Sbjct: 468 --------KRHRPSAGGP----DSAGRKRPLEQSNSALSESSAATEPSSPQLGSPSSDSC 515
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 119/250 (47%), Gaps = 27/250 (10%)
Query: 361 SLSEQKFEKAAVSYGTDVVRFTQKNILRIYPKQTRVNSSNYKPMIGWIHGAQMVALNMQG 420
S E K + + V + ++ + RIYPK TRV+SSNY P + W G Q+VALN Q
Sbjct: 618 SFVETKAMEQLTKSPMEFVEYNKQQLSRIYPKGTRVDSSNYMPQLFWNVGCQLVALNFQT 677
Query: 421 YGKSLWLMHGMFRANAGCGYVKKPNFLLKEGPDDQVFDPKEKL----PVKKTLKVKAYMG 476
++ L G+F N GY+ KP F+ + D+ FDP ++ V L+VK
Sbjct: 678 LDVAMQLNAGVFEYNGRSGYLLKPEFMRRP---DKSFDPFTEVIVDGIVANALRVKVI-- 732
Query: 477 DGWYLDFKQMDCKFWSPPQFYTRVGIAGVPADXXXXXXXXXV--DNWTPVWDDE-FTFP- 532
G +L +++ Y V + G+P D +++ PVWD+E F FP
Sbjct: 733 SGQFLSDRKVG--------IYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPK 784
Query: 533 LTIPEMALLRVEVRKYSMPEKDEFAGQTCLPVFQLRPGIHAVPLFDRKGEELGSARLLMR 592
+ +P +A LR+ + E +F G LPV +R G H V L + + L LL+
Sbjct: 785 VVLPTLASLRIA----AFEEGGKFVGHRILPVSAIRSGYHYVCLRNEANQPLCLPALLIY 840
Query: 593 FEFYEADVLP 602
E +D +P
Sbjct: 841 TE--ASDYIP 848
>pdb|4GNK|B Chain B, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|D Chain D, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 1235
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 145/304 (47%), Gaps = 42/304 (13%)
Query: 36 AEGGTHMTAEQLWQFLVEVQGHGGVS------IEDAEQIVDQVLQRWHHIARFTRR-SLT 88
A+G ++T EQL F+ + Q ++ + ++ + +++++ +F R ++
Sbjct: 236 AKGKPYLTLEQLMDFINQKQRDPRLNEVLYPPLRPSQARL--LIEKYEPNQQFLERDQMS 293
Query: 89 VEDFHHYLFSTD--LNPPLGNQVYQDMTAPLSHYFIYTGHNSYLIGNQFSSDCSDVPITK 146
+E F YL + + P + DMT PLS YFI + HN+YL Q + S +
Sbjct: 294 MEGFSRYLGGEENGILPLEALDLSTDMTQPLSAYFINSSHNTYLTAGQLAGTSSVEMYRQ 353
Query: 147 ALKRGVRVIELDLWPNSA-KDDVLVLHGRTLTTPVELIKCLRAIKENAFSASPYPVILTF 205
AL G R +ELD+W +++ + HG T+TT V L L AI E AF SPYPVIL+F
Sbjct: 354 ALLWGCRCVELDVWKGRPPEEEPFITHGFTMTTEVPLRDVLEAIAETAFKTSPYPVILSF 413
Query: 206 EDHLN-PHLQAKVAQMITQTFG-AMLYSPESECLKEF--------PSPEELKYRIIISTK 255
E+H++ QAK+A+ FG A+L P L ++ PSP++L RI++ K
Sbjct: 414 ENHVDSAKQQAKMAEYCRSIFGDALLIEP----LDKYPLAPGVPLPSPQDLMGRILVKNK 469
Query: 256 PPKERREKKGINNRKDISAKGKISTEDVLGKEPPDLTANQADDERSDYDTSEHNQCDEDN 315
R SA G D G++ P +N A E S Q +
Sbjct: 470 ------------KRHRPSAGGP----DSAGRKRPLEQSNSALSESSAATEPSSPQLGSPS 513
Query: 316 TEAC 319
+++C
Sbjct: 514 SDSC 517
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 115/234 (49%), Gaps = 27/234 (11%)
Query: 377 DVVRFTQKNILRIYPKQTRVNSSNYKPMIGWIHGAQMVALNMQGYGKSLWLMHGMFRANA 436
+ V + ++ + RIYPK TRV+SSNY P + W G Q+VALN Q ++ L G+F N
Sbjct: 636 EFVEYNKQQLSRIYPKGTRVDSSNYMPQLFWNVGCQLVALNFQTLDVAMQLNAGVFEYNG 695
Query: 437 GCGYVKKPNFLLKEGPDDQVFDPKEKL----PVKKTLKVKAYMGDGWYLDFKQMDCKFWS 492
GY+ KP F+ + D+ FDP ++ V L+VK G +L +++
Sbjct: 696 RSGYLLKPEFMRR---PDKSFDPFTEVIVDGIVANALRVKVI--SGQFLSDRKVG----- 745
Query: 493 PPQFYTRVGIAGVPADXXXX--XXXXXVDNWTPVWDDE-FTFP-LTIPEMALLRVEVRKY 548
Y V + G+P D +++ PVWD+E F FP + +P +A LR+
Sbjct: 746 ---IYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRI----A 798
Query: 549 SMPEKDEFAGQTCLPVFQLRPGIHAVPLFDRKGEELGSARLLMRFEFYEADVLP 602
+ E +F G LPV +R G H V L + + L LL+ E +D +P
Sbjct: 799 AFEEGGKFVGHRILPVSAIRSGYHYVCLRNEANQPLCLPALLIYTE--ASDYIP 850
>pdb|3QR0|A Chain A, Crystal Structure Of S. Officinalis Plc21
Length = 816
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 109/221 (49%), Gaps = 22/221 (9%)
Query: 377 DVVRFTQKNILRIYPKQTRVNSSNYKPMIGWIHGAQMVALNMQGYGKSLWLMHGMFRANA 436
D V + +K I RIYPK TRV+SSNY P I W G Q+VALN Q + ++ + G+F N
Sbjct: 559 DFVDYNKKQITRIYPKGTRVDSSNYVPQIYWNAGCQLVALNFQCFDIAMCVNLGVFEYNG 618
Query: 437 GCGYVKKPNFLLKEGPDDQVFDPKEKLPVKKTLKVKAYMGDGWYLDFKQMDCKFWSPPQF 496
GY+ KP F+ K D+ FDP + V + ++ K + +F S Q
Sbjct: 619 CSGYLLKPEFMRKL---DKRFDPFTESTVDGVV--------AGTIEIKIISAQFLSDKQI 667
Query: 497 --YTRVGIAGVPADXXXXXXXXXV---DNWTPVWDDE-FTF-PLTIPEMALLRVEVRKYS 549
Y V + G+P D + + P +D++ F F + +P++A++R+ V +
Sbjct: 668 SSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSE-- 725
Query: 550 MPEKDEFAGQTCLPVFQLRPGIHAVPLFDRKGEELGSARLL 590
E +F G +P+ ++PG VPL + LG A +
Sbjct: 726 --ENGKFIGHRVMPLDGIKPGYRHVPLRNESNRPLGLASVF 764
>pdb|3QR1|A Chain A, Crystal Structure Of L. Pealei Plc21
pdb|3QR1|D Chain D, Crystal Structure Of L. Pealei Plc21
Length = 813
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 107/221 (48%), Gaps = 22/221 (9%)
Query: 377 DVVRFTQKNILRIYPKQTRVNSSNYKPMIGWIHGAQMVALNMQGYGKSLWLMHGMFRANA 436
D V + +K + RIYPK TRV+SSNY P I W G Q+VALN Q + ++ + G+F N
Sbjct: 559 DFVDYNKKQLTRIYPKGTRVDSSNYVPQIYWNAGCQLVALNFQCFDVAMCVNLGVFEYNG 618
Query: 437 GCGYVKKPNFLLKEGPDDQVFDPKEKLPVKKTLKVKAYMGDGWYLDFKQMDCKFWSPPQF 496
GY+ KP F+ K D+ FDP + V + ++ K + +F S Q
Sbjct: 619 CSGYLLKPEFMRKL---DKRFDPFTESTVDGVV--------AGTIEIKIISAQFLSDKQI 667
Query: 497 --YTRVGIAGVPADXXXXXXXXXVDN---WTPVWDDE-FTF-PLTIPEMALLRVEVRKYS 549
Y V + G+P D N P +++ F F + +P++A++R+ V +
Sbjct: 668 SSYVEVEMYGLPTDTVRKKFKTKTVNNNGMDPYYNENAFVFKKVVLPDLAVVRIIVNE-- 725
Query: 550 MPEKDEFAGQTCLPVFQLRPGIHAVPLFDRKGEELGSARLL 590
+ +F G +P+ ++PG +PL + LG A +
Sbjct: 726 --DGGKFIGHRLMPLDGIKPGYRHIPLRNESNRPLGLASVF 764
>pdb|1NM8|A Chain A, Structure Of Human Carnitine Acetyltransferase: Molecular
Basis For Fatty Acyl Transfer
pdb|1S5O|A Chain A, Structural And Mutational Characterization Of L-Carnitine
Binding To Human Carnitine Acetyltransferase
Length = 616
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 6 LCGLPACFTRKHKVAEA----GPPADVKEMFKKYAEGGTHMTAEQLWQFLVEVQGHGGVS 61
L G P C + +++ + GP D F K + TH+T +QF H +
Sbjct: 142 LGGKPLCMNQYYQILSSCRVPGPKQDTVSNFSKTKKPPTHITVVHNYQFFELDVYHSDGT 201
Query: 62 IEDAEQIVDQVLQRWH 77
A+QI Q+ + W+
Sbjct: 202 PLTADQIFVQLEKIWN 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,812,179
Number of Sequences: 62578
Number of extensions: 806344
Number of successful extensions: 1697
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1656
Number of HSP's gapped (non-prelim): 20
length of query: 602
length of database: 14,973,337
effective HSP length: 104
effective length of query: 498
effective length of database: 8,465,225
effective search space: 4215682050
effective search space used: 4215682050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)