BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007474
(602 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 83/199 (41%), Gaps = 15/199 (7%)
Query: 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGA-VLESRLLKIISAYVMQDELLFPM 59
MA+LG SG+GKSTL+ +AG + S G + + V E V Q+ L+P
Sbjct: 32 MALLGPSGSGKSTLLYTIAGIYKPTS--GKIYFDEKDVTELPPKDRNVGLVFQNWALYPH 89
Query: 60 LTVEETLMFSAECR-LPXXXXXXXXXXXXXAL-IDQLGLRSAAKTFIGDEQHXXXXXXXX 117
+TV + + F E R P L ID+L R + G +Q
Sbjct: 90 MTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARA-- 147
Query: 118 XXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFS 177
++ +P +L LDEP S LD+ +V L + K + + + +
Sbjct: 148 --------LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALA 199
Query: 178 LLNRLIFLSHGQTVYSGTP 196
+ +R+ + G+ + GTP
Sbjct: 200 MADRIAVIREGEILQVGTP 218
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 92/203 (45%), Gaps = 29/203 (14%)
Query: 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIIS-------AYVMQD 53
++I+GASG+GKSTL+ L G ++ + +G V L G ++ K +S +V Q
Sbjct: 33 VSIIGASGSGKSTLLYIL-GLLDAPT-EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQF 90
Query: 54 ELLFPMLTVEETLMFSAECRLPXXXXXXXXXXXXXALIDQLGL-----RSAAKTFIGDEQ 108
L P LT E ++ L L+ +LGL R + G++Q
Sbjct: 91 HYLIPELTALENVIVPM---LKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQ 147
Query: 109 HXXXXXXXXXXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSI 168
+ ++PILLF DEPT LDS + +V+ + +I + G+ ++M
Sbjct: 148 RVAIARA----------LANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVT 197
Query: 169 HQPSYRIFSLLNRLIFLSHGQTV 191
H+ + L +R + + G+ V
Sbjct: 198 HE--RELAELTHRTLEMKDGKVV 218
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 84/203 (41%), Gaps = 20/203 (9%)
Query: 3 ILGASGAGKSTLIDALAGRIEKESLKGTVTLNGA-VLESRLLKIISAYVMQDELLFPMLT 61
ILG +GAGK+ ++ +AG +S G + L+G V + K A+V Q+ LFP +
Sbjct: 31 ILGPTGAGKTLFLELIAGFHVPDS--GRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMN 88
Query: 62 VEETLMFS---AECRLPXXXXXXXXXXXXXALIDQLGLRSAAKTFIGDEQHXXXXXXXXX 118
V++ L F + + P L+D+ L T G EQ
Sbjct: 89 VKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPL-----TLSGGEQQRVALARA-- 141
Query: 119 XXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSL 178
++ +P +L LDEP S LD + ++L + K + ++ I +
Sbjct: 142 -------LVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIM 194
Query: 179 LNRLIFLSHGQTVYSGTPATDFS 201
+R+ + G+ + G P F
Sbjct: 195 ADRIAVVMDGKLIQVGKPEEIFE 217
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 16/199 (8%)
Query: 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLF 57
+A++G+SG GKST+I L + LKG +T++G + L+ A V Q+ LF
Sbjct: 447 VALVGSSGCGKSTIISLLLRYY--DVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALF 504
Query: 58 PMLTVEETLMFSAECRLPXXXXXXXXXXXXXALIDQLGLRSAAKTFIGDEQHXXXXXXXX 117
T+EE + E I L + T +GD +
Sbjct: 505 N-CTIEENISLGKEGITREEMVAACKMANAEKFIKT--LPNGYNTLVGD-RGTQLSGGQK 560
Query: 118 XXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFS 177
++ +P +L LDE TS LD+ S V + L + AK + +I+ ++R+ +
Sbjct: 561 QRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIII-----AHRLST 615
Query: 178 LLNRLIFLS--HGQTVYSG 194
+ N + +S +GQ V G
Sbjct: 616 IRNADLIISCKNGQVVEVG 634
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 126 IIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNR--LI 183
++ +P +L LDE TS LD+ S KVV+ + A+ G I+ H R+ +++N +
Sbjct: 1232 LVRNPKILLLDEATSALDTESE-KVVQEALDRAREGRTCIVIAH----RLNTVMNADCIA 1286
Query: 184 FLSHGQTVYSGT 195
+S+G + GT
Sbjct: 1287 VVSNGTIIEKGT 1298
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 82/194 (42%), Gaps = 14/194 (7%)
Query: 3 ILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQD-ELLFPMLT 61
++G +G+GK+TL+ LAG + + G + L+G+ + LL+ YV Q+ T
Sbjct: 42 VVGKNGSGKTTLLKILAGLL---AAAGEIFLDGSPADPFLLRKNVGYVFQNPSSQIIGAT 98
Query: 62 VEETLMFSAECRLPXXXXXXXXXXXXXALIDQLGLRSAAKTFIGDEQHXXXXXXXXXXXX 121
VEE + FS E L+ GL +A + Q
Sbjct: 99 VEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAIASM---- 154
Query: 122 XXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNR 181
+ D L LDEP S LD S ++ +VL + G +I+ H+ Y ++
Sbjct: 155 ----LARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEY--LDDMDF 208
Query: 182 LIFLSHGQTVYSGT 195
++ +S+G + G+
Sbjct: 209 ILHISNGTIDFCGS 222
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 87/200 (43%), Gaps = 19/200 (9%)
Query: 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIIS----AYVMQDELL 56
+ ++GA+GAGK+T + A+AG + + KG + NG + ++ +I+ A V + +
Sbjct: 35 VTLIGANGAGKTTTLSAIAGLVRAQ--KGKIIFNGQDITNKPAHVINRXGIALVPEGRRI 92
Query: 57 FPMLTVEETLMFSAECRLPXXXXXXXXXXXXXALIDQLG--LRSAAKTFIGDEQHXXXXX 114
FP LTV E L A R +L +L L+ T G EQ
Sbjct: 93 FPELTVYENLXXGAYNR-KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQXLAIG 151
Query: 115 XXXXXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYR 174
+ P LL DEP+ GL +V +V+ +I + G+ +++ + Q +
Sbjct: 152 RA---------LXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILL-VEQNALG 201
Query: 175 IFSLLNRLIFLSHGQTVYSG 194
+ + L GQ V G
Sbjct: 202 ALKVAHYGYVLETGQIVLEG 221
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 89/209 (42%), Gaps = 21/209 (10%)
Query: 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR---LLKIIS--AYVMQDEL 55
+ ++G SG+GKST + L + ++ +G + ++G L+++ L K+ V Q
Sbjct: 32 VVVIGPSGSGKSTFLRCL--NLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFN 89
Query: 56 LFPMLTVEETLMFSAECRLPXXXXX---XXXXXXXXALIDQLGLRSAAKTFIGDEQHXXX 112
LFP +TV + + P L+D++GL+ A +
Sbjct: 90 LFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDKVGLKDKAHAY-----PDSL 139
Query: 113 XXXXXXXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPS 172
+ +P ++ DEPTS LD +V+ V+ ++A G +++ H+
Sbjct: 140 SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG 199
Query: 173 YRIFSLLNRLIFLSHGQTVYSGTPATDFS 201
+ + +R++F+ G + G P F
Sbjct: 200 F-AREVGDRVLFMDGGYIIEEGKPEDLFD 227
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 129 DPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHG 188
+P L LDEPTSGLD +A +V K+L + ++ G +++S H + L +R+ + +G
Sbjct: 164 NPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHN-MLEVEFLCDRIALIHNG 222
Query: 189 QTVYSGT 195
V +GT
Sbjct: 223 TIVETGT 229
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 89/209 (42%), Gaps = 21/209 (10%)
Query: 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR---LLKIIS--AYVMQDEL 55
+ ++G SG+GKST + L + ++ +G + ++G L+++ L K+ V Q
Sbjct: 53 VVVIGPSGSGKSTFLRCL--NLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFN 110
Query: 56 LFPMLTVEETLMFSAECRLPXXXXX---XXXXXXXXALIDQLGLRSAAKTFIGDEQHXXX 112
LFP +TV + + P L+D++GL+ A +
Sbjct: 111 LFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDKVGLKDKAHAY-----PDSL 160
Query: 113 XXXXXXXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPS 172
+ +P ++ DEPTS LD +V+ V+ ++A G +++ H+
Sbjct: 161 SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG 220
Query: 173 YRIFSLLNRLIFLSHGQTVYSGTPATDFS 201
+ + +R++F+ G + G P F
Sbjct: 221 F-AREVGDRVLFMDGGYIIEEGKPEDLFD 248
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 85/204 (41%), Gaps = 27/204 (13%)
Query: 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLK--IISAYVMQDELLFP 58
+ + G +G+GKSTL+ +AG IE S G V +G + ++ I A+ ++ F
Sbjct: 36 LLVAGNTGSGKSTLLQIVAGLIEPTS--GDVLYDGERKKGYEIRRNIGIAFQYPEDQFFA 93
Query: 59 MLTVEETLMFSAECRLPXXXXXXXXXXXXXALIDQLGLRSAAKTFIG-------DEQHXX 111
+E + F+ + P D + L A F+G D
Sbjct: 94 ERVFDE-VAFAVKNFYPDR--------------DPVPLVKKAMEFVGLDFDSFKDRVPFF 138
Query: 112 XXXXXXXXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQP 171
I+H+P +L LDEP GLD +++++ + G VI+ H
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 198
Query: 172 SYRIFSLLNRLIFLSHGQTVYSGT 195
+ + ++R++ L G+ V+ GT
Sbjct: 199 ET-VINHVDRVVVLEKGKKVFDGT 221
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 85/204 (41%), Gaps = 27/204 (13%)
Query: 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLK--IISAYVMQDELLFP 58
+ + G +G+GKSTL+ +AG IE S G V +G + ++ I A+ ++ F
Sbjct: 38 LLVAGNTGSGKSTLLQIVAGLIEPTS--GDVLYDGERKKGYEIRRNIGIAFQYPEDQFFA 95
Query: 59 MLTVEETLMFSAECRLPXXXXXXXXXXXXXALIDQLGLRSAAKTFIG-------DEQHXX 111
+E + F+ + P D + L A F+G D
Sbjct: 96 ERVFDE-VAFAVKNFYPDR--------------DPVPLVKKAMEFVGLDFDSFKDRVPFF 140
Query: 112 XXXXXXXXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQP 171
I+H+P +L LDEP GLD +++++ + G VI+ H
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 200
Query: 172 SYRIFSLLNRLIFLSHGQTVYSGT 195
+ + ++R++ L G+ V+ GT
Sbjct: 201 ET-VINHVDRVVVLEKGKKVFDGT 223
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 21/204 (10%)
Query: 3 ILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVL-----ESRLLKIISAYVMQDELLF 57
+LG +GAGKS ++ +AG ++ + +G V LNGA + E R + +V QD LF
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD--RGEVRLNGADITPLPPERRGI----GFVPQDYALF 82
Query: 58 PMLTVEETLMFSAECRLPXXXXXXXXXXXXXALIDQLGLRSAAKTFIGDEQHXXXXXXXX 117
P L+V + + I L R A+ G+ Q
Sbjct: 83 PHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARA-- 140
Query: 118 XXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFS 177
++ P LL LDEP S +D + +++ L + + V I+ +
Sbjct: 141 --------LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAM 192
Query: 178 LLNRLIFLSHGQTVYSGTPATDFS 201
L + + + +G+ V G FS
Sbjct: 193 LADEVAVMLNGRIVEKGKLKELFS 216
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 79/202 (39%), Gaps = 15/202 (7%)
Query: 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQ-DELL 56
+AI+G +GAGKSTL+ L G + G L G L S + L A + Q EL
Sbjct: 40 VAIIGPNGAGKSTLLRLLTGYLSPS--HGECHLLGQNLNSWQPKALARTRAVMRQYSELA 97
Query: 57 FPMLTVEETLMFSAECRLPXX-XXXXXXXXXXXALIDQLGL-RSAAKTFIGDEQHXXXXX 114
FP +V E + R P A D L L + + G EQ
Sbjct: 98 FP-FSVSEVIQMG---RAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLA 153
Query: 115 XXXXXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYR 174
P LFLDEPTS LD +++L ++ + + + +
Sbjct: 154 RVLAQLWQPQPT---PRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNL 210
Query: 175 IFSLLNRLIFLSHGQTVYSGTP 196
+R++ L+ G+ V GTP
Sbjct: 211 AALYADRIMLLAQGKLVACGTP 232
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 85/218 (38%), Gaps = 20/218 (9%)
Query: 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIIS-AYVMQDELLFPM 59
+A+LG SG GK+T + LAG + S G + + ++ K V Q+ L+P
Sbjct: 32 VALLGPSGCGKTTTLLMLAGIYKPTS--GEIYFDDVLVNDIPPKYREVGMVFQNYALYPH 89
Query: 60 LTVEETLMFSAECRL--PXXXXXXXXXXXXXALIDQLGLRSAAKTFIGDEQHXXXXXXXX 117
+TV E + F R LID L R + G +Q
Sbjct: 90 MTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARA-- 147
Query: 118 XXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFS 177
++ P +L DEP S LD+ + + + + + + + +
Sbjct: 148 --------LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMT 199
Query: 178 LLNRLIFLSHGQTVYSGTPATDF----SLFFAEF-GHP 210
+ +R+ + G+ V GTP + ++F A F G+P
Sbjct: 200 MASRIAVFNQGKLVQYGTPDEVYDSPKNMFVASFIGNP 237
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 129 DPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHG 188
+P +L DEPTS LD +V++++ ++A+ G +++ H+ + + + +IFL G
Sbjct: 171 EPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF-ARHVSSHVIFLHQG 229
Query: 189 QTVYSGTPATDF 200
+ G P F
Sbjct: 230 KIEEEGDPEQVF 241
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 126 IIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKS-GSVVIMSIHQ----PSYRIFSLLN 180
++ +P +L LDEPT+GLD +++K+L E+ K G +I++ H P Y +
Sbjct: 158 LVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLY-----CD 212
Query: 181 RLIFLSHGQTVYSGTPATDFS 201
+ + G+ + G P F+
Sbjct: 213 NVFVMKEGRVILQGNPKEVFA 233
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 86/199 (43%), Gaps = 16/199 (8%)
Query: 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNG---AVLESRLLKIISAYVMQDELLF 57
+ I+G SG+GKSTL + E+ G V ++G A+ + L+ V+QD +L
Sbjct: 32 IGIVGRSGSGKSTLTKLIQRFYIPEN--GQVLIDGHDLALADPNWLRRQVGVVLQDNVLL 89
Query: 58 PMLTVEETLMFSAECRLPXXXXXXXXXXXXXALIDQLGLRSAAKTFIGDEQHXXXXXXXX 117
++ + + + + + LR T +G EQ
Sbjct: 90 NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE---LREGYNTIVG-EQGAGLSGGQR 145
Query: 118 XXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFS 177
++++P +L DE TS LD S +++ + +I K +V+I+ ++R+ +
Sbjct: 146 QRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIII-----AHRLST 200
Query: 178 LLN--RLIFLSHGQTVYSG 194
+ N R+I + G+ V G
Sbjct: 201 VKNADRIIVMEKGKIVEQG 219
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 86/199 (43%), Gaps = 16/199 (8%)
Query: 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNG---AVLESRLLKIISAYVMQDELLF 57
+ I+G SG+GKSTL + E+ G V ++G A+ + L+ V+QD +L
Sbjct: 38 IGIVGRSGSGKSTLTKLIQRFYIPEN--GQVLIDGHDLALADPNWLRRQVGVVLQDNVLL 95
Query: 58 PMLTVEETLMFSAECRLPXXXXXXXXXXXXXALIDQLGLRSAAKTFIGDEQHXXXXXXXX 117
++ + + + + + LR T +G EQ
Sbjct: 96 NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE---LREGYNTIVG-EQGAGLSGGQR 151
Query: 118 XXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFS 177
++++P +L DE TS LD S +++ + +I K +V+I+ ++R+ +
Sbjct: 152 QRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIII-----AHRLST 206
Query: 178 LLN--RLIFLSHGQTVYSG 194
+ N R+I + G+ V G
Sbjct: 207 VKNADRIIVMEKGKIVEQG 225
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 78/205 (38%), Gaps = 24/205 (11%)
Query: 2 AILGASGAGKSTLIDALAGRIEKESL------KGTVTLNGAVL---ESRLLKIISAYVMQ 52
ILG SGAGK+T + +AG ++ S V NG ++ E R + V Q
Sbjct: 35 GILGPSGAGKTTFMRIIAG-LDVPSTGELYFDDRLVASNGKLIVPPEDRKI----GMVFQ 89
Query: 53 DELLFPMLTVEETLMFS-AECRLPXXXXXXXXXXXXXALIDQLGLRSAAKTFIGDEQHXX 111
L+P LT E + F ++ L L + G +Q
Sbjct: 90 TWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRV 149
Query: 112 XXXXXXXXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQP 171
++ DP LL LDEP S LD+ ++ E+ V ++ +
Sbjct: 150 ALARA---------LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD 200
Query: 172 SYRIFSLLNRLIFLSHGQTVYSGTP 196
IF++ +R+ L G+ V G P
Sbjct: 201 PADIFAIADRVGVLVKGKLVQVGKP 225
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 86/199 (43%), Gaps = 16/199 (8%)
Query: 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNG---AVLESRLLKIISAYVMQDELLF 57
+ I+G SG+GKSTL + E+ G V ++G A+ + L+ V+QD +L
Sbjct: 34 IGIVGRSGSGKSTLTKLIQRFYIPEN--GQVLIDGHDLALADPNWLRRQVGVVLQDNVLL 91
Query: 58 PMLTVEETLMFSAECRLPXXXXXXXXXXXXXALIDQLGLRSAAKTFIGDEQHXXXXXXXX 117
++ + + + + + LR T +G EQ
Sbjct: 92 NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE---LREGYNTIVG-EQGAGLSGGQR 147
Query: 118 XXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFS 177
++++P +L DE TS LD S +++ + +I K +V+I+ ++R+ +
Sbjct: 148 QRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIII-----AHRLST 202
Query: 178 LLN--RLIFLSHGQTVYSG 194
+ N R+I + G+ V G
Sbjct: 203 VKNADRIIVMEKGKIVEQG 221
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 17/76 (22%)
Query: 3 ILGASGAGKSTLIDALAGRIEKESLKGTVTLNG----------AVLESRLLKIISAYVMQ 52
I+GASG GK+TL+ LAG + +S G ++L+G V E RL Y++Q
Sbjct: 35 IIGASGCGKTTLLRCLAGFEQPDS--GEISLSGKTIFSKNTNLPVRERRL-----GYLVQ 87
Query: 53 DELLFPMLTVEETLMF 68
+ +LFP LTV + +
Sbjct: 88 EGVLFPHLTVYRNIAY 103
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 78/205 (38%), Gaps = 24/205 (11%)
Query: 2 AILGASGAGKSTLIDALAGRIEKESL------KGTVTLNGAVL---ESRLLKIISAYVMQ 52
ILG SGAGK+T + +AG ++ S V NG ++ E R + V Q
Sbjct: 35 GILGPSGAGKTTFMRIIAG-LDVPSTGELYFDDRLVASNGKLIVPPEDRKI----GMVFQ 89
Query: 53 DELLFPMLTVEETLMFS-AECRLPXXXXXXXXXXXXXALIDQLGLRSAAKTFIGDEQHXX 111
L+P LT E + F ++ L L + G +Q
Sbjct: 90 TWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRV 149
Query: 112 XXXXXXXXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQP 171
++ DP LL LDEP S LD+ ++ E+ V ++ +
Sbjct: 150 ALARA---------LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD 200
Query: 172 SYRIFSLLNRLIFLSHGQTVYSGTP 196
IF++ +R+ L G+ V G P
Sbjct: 201 PADIFAIADRVGVLVKGKLVQVGKP 225
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 10/175 (5%)
Query: 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLF 57
+A++G SG GKST + L R+ + L G V+++G + + R L+ I V Q+ +LF
Sbjct: 419 VALVGNSGCGKSTTVQ-LMQRL-YDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLF 476
Query: 58 PMLTVEETLMFSAECRLPXXXXXXXXXXXXXALIDQLGLRSAAKTFIGDEQHXXXXXXXX 117
T+ E + + E I + L T +G E+
Sbjct: 477 AT-TIAENIRYGREDVTMDEIEKAVKEANAYDFI--MKLPHQFDTLVG-ERGAQLSGGQK 532
Query: 118 XXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPS 172
++ +P +L LDE TS LD+ S VV+ + A+ G I+ H+ S
Sbjct: 533 QRIAIARALVRNPKILLLDEATSALDTESE-AVVQAALDKAREGRTTIVIAHRLS 586
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 90/204 (44%), Gaps = 22/204 (10%)
Query: 1 MAILGASGAGKSTLIDALAGRIEK--ESLKGTVTLNGAVLES---RLLKIISAYVMQDEL 55
+A++G+SG GKST++ L E+ + + G+V L+G ++ + L+ V Q+ +
Sbjct: 1062 LALVGSSGCGKSTVVQLL----ERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPI 1117
Query: 56 LFPMLTVEETLMFSAECRLPXXXXXXXXXXXXXALIDQL--GLRSAAKTFIGDEQHXXXX 113
LF ++ E + + R+ A I Q L T +GD +
Sbjct: 1118 LFD-CSIAENIAYGDNSRV--VSYEEIVRAAKEANIHQFIDSLPDKYNTRVGD-KGTQLS 1173
Query: 114 XXXXXXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSY 173
++ P +L LDE TS LD+ S KVV+ + A+ G I+ H
Sbjct: 1174 GGQKQRIAIARALVRQPHILLLDEATSALDTESE-KVVQEALDKAREGRTCIVIAH---- 1228
Query: 174 RIFSLLNR--LIFLSHGQTVYSGT 195
R+ ++ N ++ + +G+ GT
Sbjct: 1229 RLSTIQNADLIVVIQNGKVKEHGT 1252
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 10/175 (5%)
Query: 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLF 57
+A++G SG GKST + L R+ + L G V+++G + + R L+ I V Q+ +LF
Sbjct: 419 VALVGNSGCGKSTTVQ-LMQRL-YDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLF 476
Query: 58 PMLTVEETLMFSAECRLPXXXXXXXXXXXXXALIDQLGLRSAAKTFIGDEQHXXXXXXXX 117
T+ E + + E I + L T +G E+
Sbjct: 477 AT-TIAENIRYGREDVTMDEIEKAVKEANAYDFI--MKLPHQFDTLVG-ERGAQLSGGQK 532
Query: 118 XXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPS 172
++ +P +L LDE TS LD+ S VV+ + A+ G I+ H+ S
Sbjct: 533 QRIAIARALVRNPKILLLDEATSALDTESE-AVVQAALDKAREGRTTIVIAHRLS 586
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 90/204 (44%), Gaps = 22/204 (10%)
Query: 1 MAILGASGAGKSTLIDALAGRIEK--ESLKGTVTLNGAVLES---RLLKIISAYVMQDEL 55
+A++G+SG GKST++ L E+ + + G+V L+G ++ + L+ V Q+ +
Sbjct: 1062 LALVGSSGCGKSTVVQLL----ERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPI 1117
Query: 56 LFPMLTVEETLMFSAECRLPXXXXXXXXXXXXXALIDQL--GLRSAAKTFIGDEQHXXXX 113
LF ++ E + + R+ A I Q L T +GD +
Sbjct: 1118 LFD-CSIAENIAYGDNSRV--VSYEEIVRAAKEANIHQFIDSLPDKYNTRVGD-KGTQLS 1173
Query: 114 XXXXXXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSY 173
++ P +L LDE TS LD+ S KVV+ + A+ G I+ H
Sbjct: 1174 GGQKQRIAIARALVRQPHILLLDEATSALDTESE-KVVQEALDKAREGRTCIVIAH---- 1228
Query: 174 RIFSLLNR--LIFLSHGQTVYSGT 195
R+ ++ N ++ + +G+ GT
Sbjct: 1229 RLSTIQNADLIVVIQNGKVKEHGT 1252
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 86/199 (43%), Gaps = 16/199 (8%)
Query: 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNG---AVLESRLLKIISAYVMQDELLF 57
+ I+G SG+GKSTL + E+ G V ++G A+ + L+ V+QD +L
Sbjct: 38 IGIVGRSGSGKSTLTKLIQRFYIPEN--GQVLIDGHDLALADPNWLRRQVGVVLQDNVLL 95
Query: 58 PMLTVEETLMFSAECRLPXXXXXXXXXXXXXALIDQLGLRSAAKTFIGDEQHXXXXXXXX 117
++ + + + + + LR T +G EQ
Sbjct: 96 NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE---LREGYNTIVG-EQGAGLSGGQR 151
Query: 118 XXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFS 177
++++P +L D+ TS LD S +++ + +I K +V+I+ ++R+ +
Sbjct: 152 QRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICKGRTVIII-----AHRLST 206
Query: 178 LLN--RLIFLSHGQTVYSG 194
+ N R+I + G+ V G
Sbjct: 207 VKNADRIIVMEKGKIVEQG 225
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 86/199 (43%), Gaps = 16/199 (8%)
Query: 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNG---AVLESRLLKIISAYVMQDELLF 57
+ I+G +G+GKSTL + E+ G V ++G A+ + L+ V+QD +L
Sbjct: 34 IGIVGRAGSGKSTLTKLIQRFYIPEN--GQVLIDGHDLALADPNWLRRQVGVVLQDNVLL 91
Query: 58 PMLTVEETLMFSAECRLPXXXXXXXXXXXXXALIDQLGLRSAAKTFIGDEQHXXXXXXXX 117
++ + + + + + LR T +G EQ
Sbjct: 92 NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE---LREGYNTIVG-EQGAGLSGGQR 147
Query: 118 XXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFS 177
++++P +L DE TS LD S +++ + +I K +V+I+ ++R+ +
Sbjct: 148 QRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIII-----AHRLST 202
Query: 178 LLN--RLIFLSHGQTVYSG 194
+ N R+I + G+ V G
Sbjct: 203 VKNADRIIVMEKGKIVEQG 221
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 85/199 (42%), Gaps = 16/199 (8%)
Query: 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNG---AVLESRLLKIISAYVMQDELLF 57
+ I+G SG+GKSTL + E+ G V ++G A+ + L+ V+QD +L
Sbjct: 32 IGIVGRSGSGKSTLTKLIQRFYIPEN--GQVLIDGHDLALADPNWLRRQVGVVLQDNVLL 89
Query: 58 PMLTVEETLMFSAECRLPXXXXXXXXXXXXXALIDQLGLRSAAKTFIGDEQHXXXXXXXX 117
++ + + + + + LR T +G EQ
Sbjct: 90 NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE---LREGYNTIVG-EQGAGLSGGQR 145
Query: 118 XXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFS 177
++++P +L DE TS LD S +++ + +I K +V+I+ + R+ +
Sbjct: 146 QRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIII-----AARLST 200
Query: 178 LLN--RLIFLSHGQTVYSG 194
+ N R+I + G+ V G
Sbjct: 201 VKNADRIIVMEKGKIVEQG 219
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 85/199 (42%), Gaps = 16/199 (8%)
Query: 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNG---AVLESRLLKIISAYVMQDELLF 57
+ I+G SG+GKSTL + E+ G V ++G A+ + L+ V+QD +L
Sbjct: 38 IGIVGRSGSGKSTLTKLIQRFYIPEN--GQVLIDGHDLALADPNWLRRQVGVVLQDNVLL 95
Query: 58 PMLTVEETLMFSAECRLPXXXXXXXXXXXXXALIDQLGLRSAAKTFIGDEQHXXXXXXXX 117
++ + + + + + LR T +G EQ
Sbjct: 96 NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE---LREGYNTIVG-EQGAGLSGGQR 151
Query: 118 XXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFS 177
++++P +L DE TS LD S +++ + +I K +V+I+ + R+ +
Sbjct: 152 QRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIII-----AARLST 206
Query: 178 LLN--RLIFLSHGQTVYSG 194
+ N R+I + G+ V G
Sbjct: 207 VKNADRIIVMEKGKIVEQG 225
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 29/205 (14%)
Query: 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDEL-- 55
+ ++G +GAGKSTL+ +AG S KG++ G LE+ L + AY+ Q +
Sbjct: 29 LHLVGPNGAGKSTLLARMAGMT---SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPP 85
Query: 56 ----LFPMLTVEETLMFSAECRLPXXXXXXXXXXXXXALIDQLGLRSAAKTFIGDEQHXX 111
++ LT+ + E AL D+LG RS + G+ Q
Sbjct: 86 FATPVWHYLTLHQHDKTRTEL--------LNDVAGALALDDKLG-RSTNQLSGGEWQRVR 136
Query: 112 XXXXXXXXXXXXXDIIHDPI--LLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIH 169
+P LL LD+P + LD + K+L +++ G ++MS H
Sbjct: 137 LAAVVLQITPQA-----NPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLAIVMSSH 191
Query: 170 QPSYRIFSLLNRLIFLSHGQTVYSG 194
++ + +R L G+ + SG
Sbjct: 192 DLNHTLRH-AHRAWLLKGGKMLASG 215
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 88/217 (40%), Gaps = 25/217 (11%)
Query: 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGA-VLESRLLKIISAYVMQDELLFPM 59
+ +LG SG+GK+T++ +AG +E+ + KG V + G V + K V Q+ LF
Sbjct: 44 VGLLGPSGSGKTTILRLIAG-LERPT-KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQH 101
Query: 60 LTVEETLMFS-AECRLPXXXXXXXXXXXXXALIDQLGLRSAAKTFI----GDEQHXXXXX 114
+TV + + F E R+P L+ + L S A F G +Q
Sbjct: 102 MTVYDNVSFGLREKRVP----KDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALA 157
Query: 115 XXXXXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYR 174
+ P +L DEP + +D+ ++ + ++ V + +
Sbjct: 158 RA---------LAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEE 208
Query: 175 IFSLLNRLIFLSHGQTVYSGTPATDF----SLFFAEF 207
+ +R++ L G GTP + +LF A F
Sbjct: 209 ALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLFVASF 245
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 128 HDPILLFLDEPTSGLDSTSAFKVVKVLGEI-AKSGSVVIMSIHQPSYRIFSLLNRLIFLS 186
++P ++ DEPT LDS + K+ ++L ++ + G V++ H + F R+I+L
Sbjct: 162 NNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFG--ERIIYLK 219
Query: 187 HGQ 189
G+
Sbjct: 220 DGE 222
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 90/220 (40%), Gaps = 24/220 (10%)
Query: 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNG---AVLESRLLKIISAYVMQDELLF 57
+ +LG SG GK+T + +AG +E +G + L + I + V Q ++
Sbjct: 41 LVLLGPSGCGKTTTLRMIAGL--EEPTEGRIYFGDRDVTYLPPKDRNI--SMVFQSYAVW 96
Query: 58 PMLTVEETLMFSAECR-LPXXXXXXXXXXXXXAL-IDQLGLRSAAKTFIGDEQHXXXXXX 115
P +TV E + F + + P L I++L R A+ G Q
Sbjct: 97 PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARA 156
Query: 116 XXXXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRI 175
I+ +P +L +DEP S LD+ + + ++ + V + +
Sbjct: 157 ----------IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEA 206
Query: 176 FSLLNRLIFLSHGQTVYSGTPATDF----SLFFAEF-GHP 210
++ +R+ ++ GQ + G+P + S+F A F G P
Sbjct: 207 MTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIGAP 246
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 90/220 (40%), Gaps = 24/220 (10%)
Query: 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNG---AVLESRLLKIISAYVMQDELLF 57
+ +LG SG GK+T + +AG +E +G + L + I + V Q ++
Sbjct: 40 LVLLGPSGCGKTTTLRMIAGL--EEPTEGRIYFGDRDVTYLPPKDRNI--SMVFQSYAVW 95
Query: 58 PMLTVEETLMFSAECR-LPXXXXXXXXXXXXXAL-IDQLGLRSAAKTFIGDEQHXXXXXX 115
P +TV E + F + + P L I++L R A+ G Q
Sbjct: 96 PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARA 155
Query: 116 XXXXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRI 175
I+ +P +L +DEP S LD+ + + ++ + V + +
Sbjct: 156 ----------IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEA 205
Query: 176 FSLLNRLIFLSHGQTVYSGTPATDF----SLFFAEF-GHP 210
++ +R+ ++ GQ + G+P + S+F A F G P
Sbjct: 206 MTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIGAP 245
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 85/205 (41%), Gaps = 29/205 (14%)
Query: 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDEL-- 55
+ ++G +GAGKSTL+ +AG S KG++ G LE+ L + AY+ Q +
Sbjct: 29 LHLVGPNGAGKSTLLARMAGMT---SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPP 85
Query: 56 ----LFPMLTVEETLMFSAECRLPXXXXXXXXXXXXXALIDQLGLRSAAKTFIGDEQHXX 111
++ LT+ + E AL D+LG RS + G+ Q
Sbjct: 86 FATPVWHYLTLHQHDKTRTEL--------LNDVAGALALDDKLG-RSTNQLSGGEWQRVR 136
Query: 112 XXXXXXXXXXXXXDIIHDPI--LLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIH 169
+P LL LD+P LD + K+L +++ G ++MS H
Sbjct: 137 LAAVVLQITPQA-----NPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLAIVMSSH 191
Query: 170 QPSYRIFSLLNRLIFLSHGQTVYSG 194
++ + +R L G+ + SG
Sbjct: 192 DLNHTLRH-AHRAWLLKGGKMLASG 215
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 132 LLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSV-VIMSIHQPSYRIFSLLNRLIFLS 186
L+ LDEPTS LD + V+ +L ++A+S ++ V+ + HQP+ ++ ++ N+ + L+
Sbjct: 149 LILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLN 203
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 1 MAILGASGAGKSTLIDALAG 20
+A+LG +G GKSTL+D L G
Sbjct: 34 LAVLGQNGCGKSTLLDLLLG 53
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 86/202 (42%), Gaps = 26/202 (12%)
Query: 1 MAILGASGAGKSTLIDALA-------GRIEKESLKGTVTLNGAVLESRLLKIISAYVMQD 53
++I+G SG+GKST+++ + G + +++K + + + R KI +V Q
Sbjct: 34 VSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKI--GFVFQQ 91
Query: 54 ELLFPMLT----VEETLMFSAECRLPXXXXXXXXXX-XXXALIDQLGLRSAAKTFIGDEQ 108
L P+LT VE L+F + A +++ G +Q
Sbjct: 92 FNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQ 151
Query: 109 HXXXXXXXXXXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEI-AKSGSVVIMS 167
+ ++P ++ D+PT LDS + K++++L ++ + G V++
Sbjct: 152 QRVAIARA---------LANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVV 202
Query: 168 IHQPSYRIFSLLNRLIFLSHGQ 189
H + F R+I+L G+
Sbjct: 203 THDINVARFG--ERIIYLKDGE 222
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 84/205 (40%), Gaps = 29/205 (14%)
Query: 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDEL-- 55
+ ++G +GAGKSTL+ AG S KG++ G LE+ L + AY+ Q +
Sbjct: 29 LHLVGPNGAGKSTLLARXAGXT---SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPP 85
Query: 56 ----LFPMLTVEETLMFSAECRLPXXXXXXXXXXXXXALIDQLGLRSAAKTFIGDEQHXX 111
++ LT+ + E AL D+LG RS + G+ Q
Sbjct: 86 FATPVWHYLTLHQHDKTRTEL--------LNDVAGALALDDKLG-RSTNQLSGGEWQRVR 136
Query: 112 XXXXXXXXXXXXXDIIHDPI--LLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIH 169
+P LL LDEP + LD + K+L +++ G ++ S H
Sbjct: 137 LAAVVLQITPQA-----NPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLAIVXSSH 191
Query: 170 QPSYRIFSLLNRLIFLSHGQTVYSG 194
++ + +R L G+ + SG
Sbjct: 192 DLNHTLRH-AHRAWLLKGGKXLASG 215
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 126 IIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFL 185
++ DP ++ DE TS LDS + + K + ++ K+ +++I++ H+ S S +I L
Sbjct: 170 LLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIA-HRLS--TISSAESIILL 226
Query: 186 SHGQTVYSGT 195
+ G+ V GT
Sbjct: 227 NKGKIVEKGT 236
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 2 AILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVL 38
AI+G +G+GKSTL LAGR + E GTV G L
Sbjct: 31 AIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 67
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 79/205 (38%), Gaps = 21/205 (10%)
Query: 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIIS-------AYVMQD 53
M +LG SG GK+T + +AG +E +G + + ++ I A V Q
Sbjct: 32 MILLGPSGCGKTTTLRMIAGL--EEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQS 89
Query: 54 ELLFPMLTVEETLMFSAECR-LPXXXXXXXXXXXXXAL-IDQLGLRSAAKTFIGDEQHXX 111
L+P +TV + + F + R +P L + +L R + G Q
Sbjct: 90 YALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVA 149
Query: 112 XXXXXXXXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQP 171
I+ P + +DEP S LD+ ++ L ++ + V + +
Sbjct: 150 LGRA----------IVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD 199
Query: 172 SYRIFSLLNRLIFLSHGQTVYSGTP 196
++ +R+ ++ G G+P
Sbjct: 200 QVEAMTMGDRIAVMNRGVLQQVGSP 224
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 78/198 (39%), Gaps = 11/198 (5%)
Query: 2 AILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVL---ESRLLKIISAYVMQDELLFP 58
A++G +G+GKST+ L + G V L+G L + L A V Q+ LLF
Sbjct: 49 ALVGPNGSGKSTVAALLQNLYQPTG--GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG 106
Query: 59 MLTVEETLMFSAECRLPXXXXXXXXXXXXXALIDQLGLRSAAKTFIGDEQHXXXXXXXXX 118
+ E + + R P A G T +G E
Sbjct: 107 R-SFRENIAYGL-TRTPTMEEITAVAMESGAHDFISGFPQGYDTEVG-ETGNQLSGGQRQ 163
Query: 119 XXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK-SGSVVIMSIHQPSYRIFS 177
+I P LL LD+ TS LD+ + +V ++L E + + V++ HQ S +
Sbjct: 164 AVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLS--LAE 221
Query: 178 LLNRLIFLSHGQTVYSGT 195
+ ++FL G GT
Sbjct: 222 RAHHILFLKEGSVCEQGT 239
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 2 AILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVL 38
AI+G +G+GKSTL LAGR + E GTV G L
Sbjct: 50 AIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 83/205 (40%), Gaps = 29/205 (14%)
Query: 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDEL-- 55
+ ++G +GAGKSTL+ AG S KG++ G LE+ L + AY+ Q +
Sbjct: 29 LHLVGPNGAGKSTLLARXAGXT---SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPP 85
Query: 56 ----LFPMLTVEETLMFSAECRLPXXXXXXXXXXXXXALIDQLGLRSAAKTFIGDEQHXX 111
++ LT+ + E AL D+LG RS + G+ Q
Sbjct: 86 FATPVWHYLTLHQHDKTRTEL--------LNDVAGALALDDKLG-RSTNQLSGGEWQRVR 136
Query: 112 XXXXXXXXXXXXXDIIHDPI--LLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIH 169
+P LL LDEP + LD + K+L + + G ++ S H
Sbjct: 137 LAAVVLQITPQA-----NPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAIVXSSH 191
Query: 170 QPSYRIFSLLNRLIFLSHGQTVYSG 194
++ + +R L G+ + SG
Sbjct: 192 DLNHTLRH-AHRAWLLKGGKXLASG 215
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 86/202 (42%), Gaps = 26/202 (12%)
Query: 1 MAILGASGAGKSTLIDALA-------GRIEKESLKGTVTLNGAVLESRLLKIISAYVMQD 53
++I+G SG+GKST+++ + G + +++K + + + R KI +V Q
Sbjct: 34 VSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKI--GFVFQQ 91
Query: 54 ELLFPMLT----VEETLMFSAECRLPXXXXXXXXXX-XXXALIDQLGLRSAAKTFIGDEQ 108
L P+LT VE L+F + A +++ G +Q
Sbjct: 92 FNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQ 151
Query: 109 HXXXXXXXXXXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEI-AKSGSVVIMS 167
+ ++P ++ D+PT LDS + K++++L ++ + G V++
Sbjct: 152 QRVAIARA---------LANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVV 202
Query: 168 IHQPSYRIFSLLNRLIFLSHGQ 189
H + F R+I+L G+
Sbjct: 203 THDINVARFG--ERIIYLKDGE 222
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 127 IHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLL--NRLIF 184
+ +P +L LDE T+ LDS S V K L + K + +++ ++R+ +++ +++ F
Sbjct: 155 LRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVI-----AHRLSTIVDADKIYF 209
Query: 185 LSHGQTVYSG 194
+ GQ SG
Sbjct: 210 IEKGQITGSG 219
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 84/209 (40%), Gaps = 33/209 (15%)
Query: 2 AILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVL---ESRLLKIISAYVMQDELLFP 58
A++G +G+GKST+ L + G + L+G L E R L A V Q+ +F
Sbjct: 47 ALVGPNGSGKSTVAALLQNLYQPTG--GQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG 104
Query: 59 MLTVEETLMFSAECRLPXXXXXXXXXXXXXALIDQLGLRSAAKTFIG----------DEQ 108
+++E + + + I ++S A +FI DE
Sbjct: 105 R-SLQENIAYGLTQK------------PTMEEITAAAVKSGAHSFISGLPQGYDTEVDEA 151
Query: 109 HXXXXXXXXXXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK--SGSVVIM 166
+I P +L LD+ TS LD+ S +V ++L E + S SV+++
Sbjct: 152 GSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLI 211
Query: 167 SIHQPSYRIFSLLNRLIFLSHGQTVYSGT 195
+ H + + ++FL G GT
Sbjct: 212 TQH---LSLVEQADHILFLEGGAIREGGT 237
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 90/210 (42%), Gaps = 31/210 (14%)
Query: 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGA-VLESRL--LKIISAYVMQDELLF 57
+A++G SG+GKST+ + + +S G++ L+G V + +L L+ A V Q+ LF
Sbjct: 372 VALVGRSGSGKSTIANLFTRFYDVDS--GSICLDGHDVRDYKLTNLRRHFALVSQNVHLF 429
Query: 58 PMLTVEETLMFSAECRLPXXXXXXXXXXXXXALIDQLGLRSAAKTFIGD----------E 107
T+ + ++AE I+Q ++ A FI + E
Sbjct: 430 ND-TIANNIAYAAEGEYTREQ------------IEQAARQAHAMEFIENMPQGLDTVIGE 476
Query: 108 QHXXXXXXXXXXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMS 167
++ D +L LDE TS LD+ S + L E+ K+ +V++++
Sbjct: 477 NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIA 536
Query: 168 IHQPSYRIFSLLNRLIFLSHGQTVYSGTPA 197
H+ S + ++ + G+ + G A
Sbjct: 537 -HRLS--TIEQADEILVVDEGEIIERGRHA 563
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 134 FLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQ 189
F DEP+S LD KV +V+ +A G V++ H + + L+ +I + +G+
Sbjct: 237 FFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA--VLDYLSDVIHVVYGE 290
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 134 FLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQ 189
F DEP+S LD KV +V+ +A G V++ H + + L+ +I + +G+
Sbjct: 251 FFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA--VLDYLSDVIHVVYGE 304
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 75/173 (43%), Gaps = 10/173 (5%)
Query: 2 AILGASGAGKSTLIDALAGRIEKESLKGTVTLNG---AVLESRLLKIISAYVMQDELLFP 58
A++G SG+GKST++ L + S GT++L+G L L+ V Q+ +LF
Sbjct: 405 ALVGPSGSGKSTVLSLLLRLYDPAS--GTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS 462
Query: 59 MLTVEETLMFSAECRLPXXXXXXXXXXXXXALIDQLGLRSAAKTF--IGDEQHXXXXXXX 116
++ E + + A+ P +R+ + F + E+
Sbjct: 463 -CSIAENIAYGADD--PSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQ 519
Query: 117 XXXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIH 169
++ +P +L LDE TS LD+ + + V + L + +V++++ H
Sbjct: 520 KQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHH 572
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 85/204 (41%), Gaps = 24/204 (11%)
Query: 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAY---VMQDELLF 57
+A+LG +G+GKSTL++ + I+ E +G V ++ + + LK + + V Q+ +LF
Sbjct: 372 VAVLGETGSGKSTLMNLIPRLIDPE--RGRVEVDELDVRTVKLKDLRGHISAVPQETVLF 429
Query: 58 PMLTVEETLMFSAECRLPXXXXXXXXXXXXXALIDQL------GLRSAAKTFIGDEQHXX 111
T++E L + E I L + + F G ++
Sbjct: 430 SG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRL 488
Query: 112 XXXXXXXXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQP 171
++ P +L LD+ TS +D + +++ L K + I++ P
Sbjct: 489 SIARA---------LVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIP 539
Query: 172 SYRIFSLLNRLIFLSHGQTVYSGT 195
+ L ++++ L G+ GT
Sbjct: 540 TA---LLADKILVLHEGKVAGFGT 560
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 75/200 (37%), Gaps = 23/200 (11%)
Query: 4 LGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISA-----YVMQDELLFP 58
+G SG GKSTL+ +AG L+ + + + E R+ A V Q L+P
Sbjct: 35 VGPSGCGKSTLLRMIAG------LETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYP 88
Query: 59 MLTVEETLMFSAECRLPXXXXXXXXXXXXXALIDQLG--LRSAAKTFIGDEQHXXXXXXX 116
L+V E + F + A + QL L K G ++
Sbjct: 89 HLSVAENMSFGLKL-AGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRT 147
Query: 117 XXXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIF 176
++ +P + LDEP S LD+ ++ + + K ++ +
Sbjct: 148 ---------LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAM 198
Query: 177 SLLNRLIFLSHGQTVYSGTP 196
+L ++++ L G+ G P
Sbjct: 199 TLADKIVVLDAGRVAQVGKP 218
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 75/200 (37%), Gaps = 23/200 (11%)
Query: 4 LGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISA-----YVMQDELLFP 58
+G SG GKSTL+ +AG L+ + + + E R+ A V Q L+P
Sbjct: 35 VGPSGCGKSTLLRMIAG------LETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYP 88
Query: 59 MLTVEETLMFSAECRLPXXXXXXXXXXXXXALIDQLG--LRSAAKTFIGDEQHXXXXXXX 116
L+V E + F + A + QL L K G ++
Sbjct: 89 HLSVAENMSFGLKL-AGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRT 147
Query: 117 XXXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIF 176
++ +P + LDEP S LD+ ++ + + K ++ +
Sbjct: 148 ---------LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAM 198
Query: 177 SLLNRLIFLSHGQTVYSGTP 196
+L ++++ L G+ G P
Sbjct: 199 TLADKIVVLDAGRVAQVGKP 218
>pdb|3CP8|A Chain A, Crystal Structure Of Gida From Chlorobium Tepidum
pdb|3CP8|B Chain B, Crystal Structure Of Gida From Chlorobium Tepidum
pdb|3CP8|C Chain C, Crystal Structure Of Gida From Chlorobium Tepidum
pdb|3CP8|D Chain D, Crystal Structure Of Gida From Chlorobium Tepidum
Length = 641
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 173 YRIF--SLLNRLIFLSHGQTVYSGTPATDFSLFFAEFGHPIPENENPCEFSLDLIRELEE 230
YR+F S +RLI + D +L ++ H + L++++ +
Sbjct: 442 YRMFTSSAEHRLILRHDNADLRLRKIGYDCNLVSSDDLHRTESIIKRVQHCLEVMKTAKV 501
Query: 231 TPSGISSLVQFNKSWQMTRNPKMASDTDRQPDVDLEDAIEASIS 274
TP+ I++L+ NK Q + P A ++P + L+D +E S+S
Sbjct: 502 TPAEINTLL-MNKGLQELKTPARALSLIKRPGISLQDILEHSLS 544
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/203 (19%), Positives = 81/203 (39%), Gaps = 10/203 (4%)
Query: 2 AILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLT 61
++GASGAGKSTLI + + + +G+V ++G L + ++ Q ++F
Sbjct: 35 GVIGASGAGKSTLIRCV--NLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFN 92
Query: 62 VEETLMFSAECRLPXXXXXXXXXXXXXALIDQLGLRSAAKTFIGDEQH---XXXXXXXXX 118
+ + LP + + L L +GD+
Sbjct: 93 LLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSL-----VGLGDKHDSYPSNLSGGQKQ 147
Query: 119 XXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSL 178
+ +P +L DE TS LD + ++++L +I + + I+ I + +
Sbjct: 148 RVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRI 207
Query: 179 LNRLIFLSHGQTVYSGTPATDFS 201
+ + +S+G+ + T + FS
Sbjct: 208 CDCVAVISNGELIEQDTVSEVFS 230
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 1 MAILGASGAGKSTLIDALAGRI 22
+A++G +GAGKSTLI+ L G +
Sbjct: 696 IAVIGPNGAGKSTLINVLTGEL 717
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 1 MAILGASGAGKSTLIDALAGRI 22
+A++G +GAGKSTLI+ L G +
Sbjct: 702 IAVIGPNGAGKSTLINVLTGEL 723
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 1 MAILGASGAGKSTLIDALAGRI 22
+A++G +GAGKSTLI+ L G +
Sbjct: 702 IAVIGPNGAGKSTLINVLTGEL 723
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 129 DPILLFLDEPTSGLDSTSAFKVVK 152
DP++L LDEPTS LD + +++
Sbjct: 172 DPVVLILDEPTSALDVLTQAHIIQ 195
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase
Sufc From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase
Sufc From Thermus Thermophilus Hb8
Length = 250
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 2 AILGASGAGKSTLIDALAGRIEKESLKGTVTLNG 35
A++G +GAGKSTL LAG E +G + L+G
Sbjct: 33 ALMGPNGAGKSTLGKILAGDPEYTVERGEILLDG 66
>pdb|3C8U|A Chain A, Crystal Structure Of Putative Fructose Transport System
Kinase (Yp_612366.1) From Silicibacter Sp. Tm1040 At
1.95 A Resolution
Length = 208
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 1 MAILGASGAGKSTLIDALAGRIEKESLKG-TVTLNGAVLESRLLKIISAYVMQDELLFPM 59
+A+ GA G+GKSTL + LA + + L V +G L++RLL+ L P
Sbjct: 25 VALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPXDGFHLDNRLLEPRG--------LLPR 76
Query: 60 LTVEETLMFSAECRL 74
ET F RL
Sbjct: 77 KGAPETFDFEGFQRL 91
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 10/171 (5%)
Query: 2 AILGASGAGKSTLIDALAGRIEKESLKGTVTLNG---AVLESRLLKIISAYVMQDELLFP 58
A++G SG+GKST++ L + S GT++L+G L L+ V Q+ +LF
Sbjct: 374 ALVGPSGSGKSTVLSLLLRLYDPAS--GTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS 431
Query: 59 MLTVEETLMFSAECRLPXXXXXXXXXXXXXALIDQLGLRSAAKTF--IGDEQHXXXXXXX 116
++ E + + A+ P +R+ + F + E+
Sbjct: 432 -CSIAENIAYGADD--PSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQ 488
Query: 117 XXXXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMS 167
++ +P +L LDE TS LD+ + + V + L + +V++++
Sbjct: 489 KQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIA 539
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 134 FLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMS 167
LD+P +D S KV+K + EI K +VI+S
Sbjct: 156 VLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 189
>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|B Chain B, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|C Chain C, Hexameric Aps Kinase From Thiobacillus Denitrificans
Length = 552
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 5 GASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRL 42
G SGAGKSTL ALA R+ + + L+G ++ L
Sbjct: 376 GLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHL 413
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 126 IIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFL 185
++ D +L LDE TS LD+ S + L E+ K+ + ++++ H+ S + ++ +
Sbjct: 495 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIA-HRLS--TIEKADEIVVV 551
Query: 186 SHGQTVYSGT 195
G V GT
Sbjct: 552 EDGVIVERGT 561
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 39/203 (19%), Positives = 81/203 (39%), Gaps = 10/203 (4%)
Query: 2 AILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLT 61
++GASGAGKSTLI + + + +G+V ++G L + ++ Q ++F
Sbjct: 58 GVIGASGAGKSTLIRCV--NLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFN 115
Query: 62 VEETLMFSAECRLPXXXXXXXXXXXXXALIDQLGLRSAAKTFIGDEQH---XXXXXXXXX 118
+ + LP + + L L +GD+
Sbjct: 116 LLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSL-----VGLGDKHDSYPSNLSGGQKQ 170
Query: 119 XXXXXXDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSL 178
+ +P +L D+ TS LD + ++++L +I + + I+ I + +
Sbjct: 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRI 230
Query: 179 LNRLIFLSHGQTVYSGTPATDFS 201
+ + +S+G+ + T + FS
Sbjct: 231 CDCVAVISNGELIEQDTVSEVFS 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,637,185
Number of Sequences: 62578
Number of extensions: 608424
Number of successful extensions: 1965
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1843
Number of HSP's gapped (non-prelim): 136
length of query: 602
length of database: 14,973,337
effective HSP length: 104
effective length of query: 498
effective length of database: 8,465,225
effective search space: 4215682050
effective search space used: 4215682050
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)