Query 007474
Match_columns 602
No_of_seqs 389 out of 3538
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 00:05:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007474.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007474hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061 Transporter, ABC super 100.0 5E-109 1E-113 927.2 58.1 551 1-602 59-613 (613)
2 TIGR00955 3a01204 The Eye Pigm 100.0 5E-105 1E-109 902.7 59.1 557 1-601 54-617 (617)
3 PLN03211 ABC transporter G-25; 100.0 3E-102 6E-107 881.5 59.7 550 1-597 97-658 (659)
4 TIGR00956 3a01205 Pleiotropic 100.0 9E-102 2E-106 937.4 57.1 581 1-597 90-694 (1394)
5 TIGR00956 3a01205 Pleiotropic 100.0 2.4E-99 5E-104 916.3 59.1 575 1-598 792-1391(1394)
6 PLN03140 ABC transporter G fam 100.0 4.6E-99 1E-103 910.7 58.8 550 1-601 909-1470(1470)
7 KOG0065 Pleiotropic drug resis 100.0 4E-100 9E-105 868.0 41.8 555 1-577 820-1390(1391)
8 PLN03140 ABC transporter G fam 100.0 1.7E-98 4E-103 905.8 55.5 549 1-597 194-789 (1470)
9 KOG0065 Pleiotropic drug resis 100.0 3.2E-92 7E-97 803.5 40.9 569 1-597 144-730 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 1.7E-47 3.7E-52 363.3 16.9 188 1-198 31-222 (240)
11 COG1135 AbcC ABC-type metal io 100.0 2E-44 4.4E-49 358.7 16.8 187 1-198 35-228 (339)
12 COG1131 CcmA ABC-type multidru 100.0 3.7E-44 8E-49 370.1 18.6 192 1-204 34-228 (293)
13 COG1136 SalX ABC-type antimicr 100.0 1.7E-43 3.6E-48 345.5 17.8 178 1-190 34-220 (226)
14 COG1125 OpuBA ABC-type proline 100.0 2.5E-43 5.4E-48 341.2 16.1 187 1-198 30-222 (309)
15 COG3839 MalK ABC-type sugar tr 100.0 2.3E-43 4.9E-48 363.8 16.1 187 1-198 32-220 (338)
16 COG4555 NatA ABC-type Na+ tran 100.0 2E-43 4.2E-48 331.0 13.3 187 1-198 31-219 (245)
17 COG1116 TauB ABC-type nitrate/ 100.0 4.9E-43 1.1E-47 342.4 16.1 175 1-188 32-207 (248)
18 COG1127 Ttg2A ABC-type transpo 100.0 5.1E-43 1.1E-47 337.6 15.7 188 1-198 37-232 (263)
19 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 9.2E-43 2E-47 344.9 17.2 188 1-198 33-224 (254)
20 COG1120 FepC ABC-type cobalami 100.0 4E-43 8.6E-48 349.3 14.4 190 1-198 31-225 (258)
21 COG1118 CysA ABC-type sulfate/ 100.0 6.8E-43 1.5E-47 346.9 15.7 189 1-198 31-224 (345)
22 COG3840 ThiQ ABC-type thiamine 100.0 8.9E-43 1.9E-47 321.5 13.7 187 1-198 28-216 (231)
23 COG3842 PotA ABC-type spermidi 100.0 8.9E-43 1.9E-47 361.2 15.3 204 1-223 34-239 (352)
24 COG3638 ABC-type phosphate/pho 100.0 7.9E-42 1.7E-46 328.6 16.0 190 1-198 33-234 (258)
25 PRK13537 nodulation ABC transp 100.0 4E-41 8.7E-46 350.3 19.0 187 1-198 36-224 (306)
26 COG2884 FtsE Predicted ATPase 100.0 4.2E-41 9.2E-46 312.8 16.5 183 2-195 32-220 (223)
27 PRK11650 ugpC glycerol-3-phosp 100.0 4.9E-41 1.1E-45 355.7 19.0 187 1-198 33-221 (356)
28 TIGR02314 ABC_MetN D-methionin 100.0 9.9E-41 2.2E-45 350.9 19.1 187 1-198 34-227 (343)
29 TIGR03265 PhnT2 putative 2-ami 100.0 9.6E-41 2.1E-45 353.1 19.0 187 1-198 33-221 (353)
30 TIGR01188 drrA daunorubicin re 100.0 1E-40 2.3E-45 347.0 18.8 187 1-198 22-210 (302)
31 COG1117 PstB ABC-type phosphat 100.0 8.7E-41 1.9E-45 316.1 16.3 205 1-221 36-248 (253)
32 PRK11432 fbpC ferric transport 100.0 1.3E-40 2.8E-45 351.6 19.0 187 1-198 35-223 (351)
33 TIGR03258 PhnT 2-aminoethylpho 100.0 1.5E-40 3.2E-45 352.3 19.0 189 1-198 34-225 (362)
34 COG1122 CbiO ABC-type cobalt t 100.0 7.7E-41 1.7E-45 332.4 15.8 187 1-198 33-225 (235)
35 cd03261 ABC_Org_Solvent_Resist 100.0 2.1E-40 4.6E-45 332.6 18.7 188 1-198 29-223 (235)
36 PRK13536 nodulation factor exp 100.0 5.2E-40 1.1E-44 345.8 19.6 187 1-198 70-258 (340)
37 TIGR01186 proV glycine betaine 100.0 5.2E-40 1.1E-44 347.3 19.5 187 1-198 22-216 (363)
38 PRK09452 potA putrescine/sperm 100.0 4.7E-40 1E-44 349.7 19.0 187 1-198 43-231 (375)
39 PRK10851 sulfate/thiosulfate t 100.0 5.9E-40 1.3E-44 347.1 19.0 190 1-198 31-223 (353)
40 cd03259 ABC_Carb_Solutes_like 100.0 1E-39 2.2E-44 322.7 18.9 183 1-194 29-213 (213)
41 TIGR00960 3a0501s02 Type II (G 100.0 8.4E-40 1.8E-44 324.1 18.1 179 1-190 32-216 (216)
42 PRK11607 potG putrescine trans 100.0 8.3E-40 1.8E-44 348.3 19.1 187 1-198 48-236 (377)
43 cd03265 ABC_DrrA DrrA is the A 100.0 1.2E-39 2.7E-44 323.8 18.7 187 1-198 29-218 (220)
44 PRK11000 maltose/maltodextrin 100.0 1.3E-39 2.8E-44 346.9 19.2 187 1-198 32-220 (369)
45 TIGR01288 nodI ATP-binding ABC 100.0 1.8E-39 3.9E-44 337.9 19.1 187 1-198 33-221 (303)
46 cd03219 ABC_Mj1267_LivG_branch 100.0 2.3E-39 4.9E-44 325.2 19.1 190 1-198 29-229 (236)
47 cd03269 ABC_putative_ATPase Th 100.0 2E-39 4.3E-44 320.0 18.1 182 1-194 29-210 (210)
48 COG1137 YhbG ABC-type (unclass 100.0 8.6E-41 1.9E-45 312.9 7.9 189 1-198 33-225 (243)
49 cd03218 ABC_YhbG The ABC trans 100.0 2.4E-39 5.3E-44 324.2 18.9 187 1-198 29-219 (232)
50 cd03266 ABC_NatA_sodium_export 100.0 2.2E-39 4.8E-44 321.4 18.2 183 1-194 34-218 (218)
51 cd03293 ABC_NrtD_SsuB_transpor 100.0 3.3E-39 7.2E-44 320.7 19.5 183 1-196 33-218 (220)
52 cd03301 ABC_MalK_N The N-termi 100.0 3.5E-39 7.6E-44 318.8 19.2 183 1-194 29-213 (213)
53 PRK11153 metN DL-methionine tr 100.0 2.4E-39 5.2E-44 342.0 19.0 187 1-198 34-227 (343)
54 cd03296 ABC_CysA_sulfate_impor 100.0 3.9E-39 8.4E-44 324.3 18.9 190 1-198 31-223 (239)
55 cd03256 ABC_PhnC_transporter A 100.0 3.8E-39 8.2E-44 324.6 18.1 190 1-198 30-231 (241)
56 cd03258 ABC_MetN_methionine_tr 100.0 4E-39 8.6E-44 322.9 18.1 187 1-198 34-227 (233)
57 PRK13643 cbiO cobalt transport 100.0 4.8E-39 1E-43 332.3 19.1 201 1-213 35-247 (288)
58 TIGR03522 GldA_ABC_ATP gliding 100.0 4.2E-39 9.1E-44 334.7 18.6 186 1-198 31-218 (301)
59 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 4.8E-39 1E-43 319.0 18.2 178 1-190 33-218 (218)
60 cd03234 ABCG_White The White s 100.0 1E-38 2.2E-43 318.6 19.9 189 1-194 36-226 (226)
61 PRK13637 cbiO cobalt transport 100.0 1.1E-38 2.3E-43 329.5 20.5 187 1-198 36-231 (287)
62 COG1124 DppF ABC-type dipeptid 100.0 5.7E-39 1.2E-43 311.1 17.1 185 1-198 36-228 (252)
63 cd03263 ABC_subfamily_A The AB 100.0 6.1E-39 1.3E-43 318.7 17.9 186 1-198 31-218 (220)
64 cd03226 ABC_cobalt_CbiO_domain 100.0 4.2E-39 9.2E-44 316.5 16.3 176 1-191 29-205 (205)
65 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1E-38 2.2E-43 326.8 19.4 187 1-198 53-247 (269)
66 cd03264 ABC_drug_resistance_li 100.0 5.9E-39 1.3E-43 316.8 17.0 182 1-194 28-211 (211)
67 cd03260 ABC_PstB_phosphate_tra 100.0 9E-39 1.9E-43 319.1 17.9 188 1-198 29-226 (227)
68 cd03268 ABC_BcrA_bacitracin_re 100.0 4.9E-39 1.1E-43 316.7 15.8 179 1-194 29-208 (208)
69 cd03292 ABC_FtsE_transporter F 100.0 1E-38 2.2E-43 315.7 18.1 179 1-190 30-214 (214)
70 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.1E-38 2.3E-43 321.8 18.3 187 1-198 30-222 (242)
71 COG0411 LivG ABC-type branched 100.0 2.8E-39 6E-44 313.5 13.3 190 1-198 33-236 (250)
72 TIGR01184 ntrCD nitrate transp 100.0 1.6E-38 3.5E-43 318.0 19.3 187 1-198 14-201 (230)
73 TIGR02673 FtsE cell division A 100.0 1.5E-38 3.2E-43 314.6 18.7 178 1-189 31-214 (214)
74 TIGR02315 ABC_phnC phosphonate 100.0 7E-39 1.5E-43 323.1 16.7 190 1-198 31-232 (243)
75 TIGR01187 potA spermidine/putr 100.0 1.1E-38 2.4E-43 334.7 18.6 185 3-198 1-187 (325)
76 PRK13647 cbiO cobalt transport 100.0 1.9E-38 4E-43 325.7 19.8 187 1-198 34-224 (274)
77 PRK09493 glnQ glutamine ABC tr 100.0 1.5E-38 3.2E-43 320.2 18.6 188 1-198 30-222 (240)
78 PRK10070 glycine betaine trans 100.0 1.5E-38 3.2E-43 340.1 19.6 187 1-198 57-251 (400)
79 PRK09536 btuD corrinoid ABC tr 100.0 9.4E-39 2E-43 341.8 17.8 190 1-198 32-225 (402)
80 cd03224 ABC_TM1139_LivF_branch 100.0 1.2E-38 2.7E-43 316.9 17.4 185 1-198 29-218 (222)
81 PRK13651 cobalt transporter AT 100.0 1.9E-38 4.1E-43 329.8 19.5 187 1-198 36-251 (305)
82 PRK11629 lolD lipoprotein tran 100.0 2.5E-38 5.5E-43 317.2 19.7 184 1-196 38-229 (233)
83 PRK13634 cbiO cobalt transport 100.0 2.1E-38 4.5E-43 327.9 19.5 186 1-198 36-232 (290)
84 PRK11264 putative amino-acid A 100.0 2E-38 4.4E-43 321.2 19.0 188 1-198 32-230 (250)
85 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.6E-38 3.5E-43 313.8 17.8 183 1-194 27-211 (211)
86 cd03297 ABC_ModC_molybdenum_tr 100.0 2.2E-38 4.8E-43 313.4 18.6 181 1-194 26-214 (214)
87 TIGR02142 modC_ABC molybdenum 100.0 1.8E-38 4E-43 336.8 18.9 185 1-198 26-218 (354)
88 PRK13650 cbiO cobalt transport 100.0 2.7E-38 5.9E-43 325.2 19.0 186 1-198 36-226 (279)
89 PRK11831 putative ABC transpor 100.0 3.5E-38 7.6E-43 322.9 19.3 188 1-198 36-230 (269)
90 PRK11144 modC molybdate transp 100.0 2.5E-38 5.4E-43 335.4 18.2 181 1-198 27-215 (352)
91 cd03262 ABC_HisP_GlnQ_permease 100.0 3.6E-38 7.7E-43 311.6 17.9 180 1-190 29-213 (213)
92 cd03225 ABC_cobalt_CbiO_domain 100.0 3.2E-38 6.9E-43 311.6 17.5 178 1-189 30-211 (211)
93 PRK13631 cbiO cobalt transport 100.0 5.5E-38 1.2E-42 328.2 20.2 186 1-198 55-262 (320)
94 COG4148 ModC ABC-type molybdat 100.0 4.1E-39 9E-44 315.1 10.9 181 1-198 27-215 (352)
95 COG4175 ProV ABC-type proline/ 100.0 1E-38 2.2E-43 317.4 13.6 186 2-198 58-251 (386)
96 PRK10908 cell division protein 100.0 5.1E-38 1.1E-42 312.6 18.8 180 1-191 31-216 (222)
97 TIGR02211 LolD_lipo_ex lipopro 100.0 4.6E-38 1E-42 312.6 18.4 179 1-191 34-220 (221)
98 COG4152 ABC-type uncharacteriz 100.0 2.7E-38 5.9E-43 304.3 16.1 189 1-202 31-219 (300)
99 PRK10895 lipopolysaccharide AB 100.0 3.6E-38 7.8E-43 317.6 17.9 188 1-198 32-223 (241)
100 TIGR03415 ABC_choXWV_ATP choli 100.0 4.5E-38 9.7E-43 334.1 19.0 187 1-198 53-251 (382)
101 PRK15079 oligopeptide ABC tran 100.0 5.2E-38 1.1E-42 329.7 19.2 189 1-198 50-248 (331)
102 cd03257 ABC_NikE_OppD_transpor 100.0 6.4E-38 1.4E-42 312.9 18.9 184 1-194 34-228 (228)
103 PRK13641 cbiO cobalt transport 100.0 5.1E-38 1.1E-42 324.5 18.5 186 1-198 36-231 (287)
104 TIGR00972 3a0107s01c2 phosphat 100.0 6.8E-38 1.5E-42 316.8 18.8 188 1-198 30-229 (247)
105 cd03235 ABC_Metallic_Cations A 100.0 4.1E-38 8.9E-43 311.3 16.7 183 1-194 28-213 (213)
106 PRK11248 tauB taurine transpor 100.0 9.5E-38 2.1E-42 317.1 19.8 183 1-196 30-215 (255)
107 PRK10619 histidine/lysine/argi 100.0 8.4E-38 1.8E-42 318.0 19.1 188 1-198 34-238 (257)
108 TIGR01277 thiQ thiamine ABC tr 100.0 9.1E-38 2E-42 308.9 18.9 184 1-195 27-212 (213)
109 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1E-37 2.2E-42 313.5 19.4 186 1-198 30-218 (236)
110 COG0410 LivF ABC-type branched 100.0 2.9E-38 6.2E-43 304.2 14.6 186 1-198 32-223 (237)
111 PRK13636 cbiO cobalt transport 100.0 1E-37 2.3E-42 321.6 19.8 187 1-198 35-228 (283)
112 PRK11124 artP arginine transpo 100.0 7.7E-38 1.7E-42 315.4 18.1 187 1-198 31-227 (242)
113 COG4525 TauB ABC-type taurine 100.0 1.3E-37 2.9E-42 290.1 18.0 184 1-197 34-220 (259)
114 PRK13646 cbiO cobalt transport 100.0 6.5E-38 1.4E-42 323.6 17.7 186 1-198 36-232 (286)
115 PRK10771 thiQ thiamine transpo 100.0 8E-38 1.7E-42 313.4 17.7 187 1-198 28-216 (232)
116 PRK13635 cbiO cobalt transport 100.0 1.1E-37 2.4E-42 320.7 19.2 186 1-198 36-226 (279)
117 PRK13649 cbiO cobalt transport 100.0 1.6E-37 3.5E-42 319.9 20.0 186 1-198 36-231 (280)
118 TIGR01257 rim_protein retinal- 100.0 2.4E-35 5.2E-40 359.5 42.3 191 1-204 959-1151(2272)
119 PRK13638 cbiO cobalt transport 100.0 1.5E-37 3.3E-42 318.5 19.7 187 1-198 30-222 (271)
120 PRK11300 livG leucine/isoleuci 100.0 1E-37 2.3E-42 316.9 18.3 190 1-198 34-240 (255)
121 PRK11614 livF leucine/isoleuci 100.0 7.4E-38 1.6E-42 314.6 16.9 185 1-198 34-223 (237)
122 TIGR03411 urea_trans_UrtD urea 100.0 1.4E-37 3E-42 313.6 18.7 189 1-198 31-228 (242)
123 TIGR02770 nickel_nikD nickel i 100.0 1.2E-37 2.5E-42 311.8 18.0 189 1-198 15-212 (230)
124 PRK14247 phosphate ABC transpo 100.0 1.5E-37 3.2E-42 314.9 18.9 190 1-198 32-231 (250)
125 TIGR01978 sufC FeS assembly AT 100.0 1.6E-37 3.5E-42 313.1 19.0 193 1-198 29-231 (243)
126 PRK14268 phosphate ABC transpo 100.0 1.5E-37 3.2E-42 316.4 18.5 187 1-198 41-239 (258)
127 TIGR03740 galliderm_ABC gallid 100.0 1.2E-37 2.6E-42 310.2 17.3 181 1-197 29-209 (223)
128 PRK13644 cbiO cobalt transport 100.0 1.1E-37 2.5E-42 319.8 17.6 186 1-198 31-221 (274)
129 PRK13548 hmuV hemin importer A 100.0 1.5E-37 3.2E-42 316.3 18.1 187 1-198 31-227 (258)
130 PRK10584 putative ABC transpor 100.0 2.5E-37 5.4E-42 308.9 19.1 180 1-192 39-226 (228)
131 PRK13652 cbiO cobalt transport 100.0 1.9E-37 4.1E-42 318.7 18.6 187 1-198 33-224 (277)
132 cd03267 ABC_NatA_like Similar 100.0 2.8E-37 6.2E-42 310.2 19.4 183 1-194 50-236 (236)
133 PRK11247 ssuB aliphatic sulfon 100.0 1.7E-37 3.7E-42 315.3 17.9 178 1-197 41-219 (257)
134 PRK09984 phosphonate/organopho 100.0 1.5E-37 3.2E-42 317.1 17.4 192 1-198 33-239 (262)
135 TIGR03005 ectoine_ehuA ectoine 100.0 2.2E-37 4.9E-42 314.0 18.5 188 1-198 29-233 (252)
136 PRK14267 phosphate ABC transpo 100.0 2.2E-37 4.8E-42 314.2 18.4 190 1-198 33-234 (253)
137 PRK13648 cbiO cobalt transport 100.0 3.2E-37 6.9E-42 315.8 19.6 186 1-198 38-228 (269)
138 PRK13639 cbiO cobalt transport 100.0 3.6E-37 7.9E-42 316.3 19.8 187 1-198 31-223 (275)
139 TIGR02769 nickel_nikE nickel i 100.0 3.1E-37 6.6E-42 315.3 19.1 188 1-198 40-237 (265)
140 PRK14273 phosphate ABC transpo 100.0 2.5E-37 5.4E-42 314.0 18.3 188 1-198 36-235 (254)
141 PRK11231 fecE iron-dicitrate t 100.0 1.8E-37 3.9E-42 315.2 17.2 190 1-198 31-224 (255)
142 PRK13549 xylose transporter AT 100.0 2.1E-37 4.5E-42 344.4 19.2 192 1-198 34-229 (506)
143 cd03299 ABC_ModC_like Archeal 100.0 3.5E-37 7.6E-42 309.4 18.9 187 1-198 28-216 (235)
144 PRK11308 dppF dipeptide transp 100.0 3.2E-37 6.9E-42 323.4 19.2 188 1-198 44-241 (327)
145 PRK13640 cbiO cobalt transport 100.0 3.9E-37 8.6E-42 317.1 19.2 188 1-198 36-229 (282)
146 PRK10575 iron-hydroxamate tran 100.0 2.3E-37 5.1E-42 316.1 17.0 190 1-198 40-234 (265)
147 TIGR03873 F420-0_ABC_ATP propo 100.0 2.9E-37 6.3E-42 313.9 17.5 190 1-198 30-223 (256)
148 PRK13633 cobalt transporter AT 100.0 3.8E-37 8.1E-42 317.0 18.4 186 1-198 39-230 (280)
149 cd03300 ABC_PotA_N PotA is an 100.0 6.1E-37 1.3E-41 307.0 19.2 187 1-198 29-217 (232)
150 PRK09473 oppD oligopeptide tra 100.0 5.3E-37 1.1E-41 322.1 19.4 193 1-198 45-248 (330)
151 PRK13632 cbiO cobalt transport 100.0 3.8E-37 8.2E-42 315.6 17.8 186 1-198 38-228 (271)
152 COG4181 Predicted ABC-type tra 100.0 3E-37 6.6E-42 282.1 15.1 180 1-192 39-226 (228)
153 TIGR03410 urea_trans_UrtE urea 100.0 3.6E-37 7.8E-42 308.1 16.9 184 1-198 29-218 (230)
154 PRK11022 dppD dipeptide transp 100.0 6.9E-37 1.5E-41 320.9 19.7 190 1-198 36-240 (326)
155 TIGR03771 anch_rpt_ABC anchore 100.0 5.1E-37 1.1E-41 305.8 17.6 187 1-198 9-198 (223)
156 PRK13645 cbiO cobalt transport 100.0 4.5E-37 9.7E-42 317.9 17.8 186 1-198 40-237 (289)
157 PRK14241 phosphate transporter 100.0 6.8E-37 1.5E-41 311.5 18.8 189 1-198 33-239 (258)
158 PRK10253 iron-enterobactin tra 100.0 3.7E-37 8E-42 314.7 16.8 190 1-198 36-230 (265)
159 TIGR00968 3a0106s01 sulfate AB 100.0 7.2E-37 1.6E-41 307.5 18.6 187 1-198 29-217 (237)
160 PRK14245 phosphate ABC transpo 100.0 6.8E-37 1.5E-41 310.1 18.2 192 1-198 32-231 (250)
161 PRK15112 antimicrobial peptide 100.0 7.9E-37 1.7E-41 312.5 18.6 188 1-198 42-236 (267)
162 PRK14269 phosphate ABC transpo 100.0 8.2E-37 1.8E-41 308.7 17.9 193 1-198 31-227 (246)
163 PRK10762 D-ribose transporter 100.0 7.6E-37 1.7E-41 339.5 19.2 190 1-198 33-227 (501)
164 PRK14250 phosphate ABC transpo 100.0 5.9E-37 1.3E-41 308.8 16.3 182 1-198 32-218 (241)
165 PRK14242 phosphate transporter 100.0 1.2E-36 2.5E-41 308.8 18.6 192 1-198 35-234 (253)
166 PRK15093 antimicrobial peptide 100.0 1.1E-36 2.4E-41 320.2 18.9 192 1-198 36-245 (330)
167 PRK10744 pstB phosphate transp 100.0 1E-36 2.2E-41 310.6 18.0 188 1-198 42-241 (260)
168 PRK13642 cbiO cobalt transport 100.0 1.7E-36 3.7E-41 311.7 19.5 186 1-198 36-226 (277)
169 TIGR03608 L_ocin_972_ABC putat 100.0 1.5E-36 3.2E-41 298.5 18.0 173 1-185 27-206 (206)
170 PRK14256 phosphate ABC transpo 100.0 1.8E-36 3.9E-41 307.4 19.1 189 1-198 33-233 (252)
171 PRK03695 vitamin B12-transport 100.0 1.4E-36 3E-41 307.5 17.8 185 1-198 25-219 (248)
172 PRK14235 phosphate transporter 100.0 1.7E-36 3.8E-41 310.0 18.7 189 1-198 48-248 (267)
173 PRK14270 phosphate ABC transpo 100.0 1.8E-36 4E-41 307.1 18.3 188 1-198 33-232 (251)
174 PRK14244 phosphate ABC transpo 100.0 2E-36 4.3E-41 306.9 18.4 193 1-198 34-234 (251)
175 PRK13547 hmuV hemin importer A 100.0 1.2E-36 2.6E-41 311.5 16.7 192 1-198 30-241 (272)
176 PRK09700 D-allose transporter 100.0 1.5E-36 3.2E-41 338.1 18.7 190 1-198 34-231 (510)
177 PRK14274 phosphate ABC transpo 100.0 2.4E-36 5.1E-41 307.7 18.1 188 1-198 41-240 (259)
178 PRK14239 phosphate transporter 100.0 2.7E-36 5.8E-41 306.0 18.3 188 1-198 34-233 (252)
179 PRK14272 phosphate ABC transpo 100.0 4E-36 8.7E-41 304.7 18.9 189 1-198 33-233 (252)
180 PRK14240 phosphate transporter 100.0 4.2E-36 9.1E-41 304.2 18.8 188 1-198 32-231 (250)
181 TIGR02633 xylG D-xylose ABC tr 100.0 3.6E-36 7.7E-41 334.3 19.9 192 1-198 30-227 (500)
182 PRK14262 phosphate ABC transpo 100.0 3.7E-36 8E-41 304.7 18.2 192 1-198 32-231 (250)
183 PRK14253 phosphate ABC transpo 100.0 4E-36 8.8E-41 304.2 18.1 192 1-198 32-230 (249)
184 PRK10982 galactose/methyl gala 100.0 3.4E-36 7.3E-41 333.7 19.1 190 1-198 27-220 (491)
185 PRK15439 autoinducer 2 ABC tra 100.0 3.1E-36 6.6E-41 335.2 18.5 183 1-198 40-226 (510)
186 COG4598 HisP ABC-type histidin 100.0 1.1E-36 2.4E-41 280.3 12.2 188 1-198 35-238 (256)
187 COG0444 DppD ABC-type dipeptid 100.0 2.6E-36 5.7E-41 304.8 16.0 193 1-198 34-240 (316)
188 TIGR02982 heterocyst_DevA ABC 100.0 5.1E-36 1.1E-40 297.9 17.9 179 1-190 34-219 (220)
189 PRK14237 phosphate transporter 100.0 5.6E-36 1.2E-40 306.2 18.7 192 1-198 49-248 (267)
190 PRK10418 nikD nickel transport 100.0 4.5E-36 9.7E-41 304.8 17.8 187 1-198 32-227 (254)
191 PRK14260 phosphate ABC transpo 100.0 6.1E-36 1.3E-40 304.7 18.4 188 1-198 36-240 (259)
192 PRK14259 phosphate ABC transpo 100.0 4.3E-36 9.3E-41 307.4 17.3 186 1-198 42-250 (269)
193 COG4559 ABC-type hemin transpo 100.0 2.3E-36 4.9E-41 285.6 14.0 187 1-198 30-227 (259)
194 PRK11701 phnK phosphonate C-P 100.0 7.6E-36 1.7E-40 303.8 18.6 188 1-198 35-238 (258)
195 cd03252 ABCC_Hemolysin The ABC 100.0 1.6E-36 3.4E-41 304.9 12.7 182 1-198 31-222 (237)
196 cd03232 ABC_PDR_domain2 The pl 100.0 6.9E-36 1.5E-40 290.8 16.7 156 1-194 36-192 (192)
197 TIGR01257 rim_protein retinal- 100.0 4.4E-36 9.5E-41 366.0 18.9 193 1-205 1968-2162(2272)
198 cd03233 ABC_PDR_domain1 The pl 100.0 8.1E-36 1.8E-40 292.6 17.3 163 1-194 36-202 (202)
199 PRK10419 nikE nickel transport 100.0 1.1E-35 2.3E-40 304.3 18.9 188 1-198 41-238 (268)
200 PRK14249 phosphate ABC transpo 100.0 1E-35 2.2E-40 301.6 18.5 192 1-198 33-232 (251)
201 PRK14251 phosphate ABC transpo 100.0 1.1E-35 2.3E-40 301.5 18.3 188 1-198 33-232 (251)
202 PRK14258 phosphate ABC transpo 100.0 1.3E-35 2.7E-40 302.7 18.8 193 1-198 36-242 (261)
203 TIGR01166 cbiO cobalt transpor 100.0 2E-35 4.3E-40 287.0 19.2 162 1-172 21-188 (190)
204 PRK14236 phosphate transporter 100.0 1.3E-35 2.7E-40 304.5 18.8 192 1-198 54-253 (272)
205 PRK14275 phosphate ABC transpo 100.0 1E-35 2.2E-40 307.2 18.2 188 1-198 68-267 (286)
206 PRK14261 phosphate ABC transpo 100.0 1.1E-35 2.5E-40 301.6 18.2 192 1-198 35-234 (253)
207 PRK14248 phosphate ABC transpo 100.0 1.1E-35 2.3E-40 304.4 18.1 188 1-198 50-249 (268)
208 PRK11288 araG L-arabinose tran 100.0 1E-35 2.2E-40 330.6 19.2 188 1-196 33-224 (501)
209 PRK10261 glutathione transport 100.0 1.1E-35 2.5E-40 337.5 19.6 188 1-198 353-550 (623)
210 cd03213 ABCG_EPDR ABCG transpo 100.0 1.3E-35 2.8E-40 289.3 17.2 155 1-194 38-194 (194)
211 PRK15056 manganese/iron transp 100.0 9.9E-36 2.1E-40 305.2 17.2 189 1-198 36-227 (272)
212 COG4988 CydD ABC-type transpor 100.0 6.8E-36 1.5E-40 320.9 16.5 182 1-198 350-540 (559)
213 cd03251 ABCC_MsbA MsbA is an e 100.0 2.7E-36 5.9E-41 302.5 12.6 182 1-198 31-222 (234)
214 PRK14271 phosphate ABC transpo 100.0 1.6E-35 3.4E-40 304.3 18.5 192 1-198 50-248 (276)
215 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 2E-35 4.3E-40 294.5 18.5 174 1-194 51-224 (224)
216 PRK14255 phosphate ABC transpo 100.0 2.1E-35 4.6E-40 299.5 18.8 188 1-198 34-233 (252)
217 PRK09700 D-allose transporter 100.0 9.9E-36 2.1E-40 331.4 17.9 188 1-196 292-493 (510)
218 PRK14254 phosphate ABC transpo 100.0 1.8E-35 4E-40 305.0 18.5 186 1-198 68-266 (285)
219 PRK14263 phosphate ABC transpo 100.0 2.1E-35 4.6E-40 300.9 18.4 190 1-198 37-242 (261)
220 PRK13543 cytochrome c biogenes 100.0 1.9E-35 4.1E-40 292.6 17.2 173 1-187 40-212 (214)
221 COG4161 ArtP ABC-type arginine 100.0 8.6E-36 1.9E-40 269.9 13.3 188 1-198 31-227 (242)
222 CHL00131 ycf16 sulfate ABC tra 100.0 3.4E-35 7.4E-40 297.9 19.4 192 1-197 36-237 (252)
223 COG2274 SunT ABC-type bacterio 100.0 3.7E-36 8.1E-41 339.9 13.5 184 1-198 502-693 (709)
224 TIGR02323 CP_lyasePhnK phospho 100.0 2.2E-35 4.7E-40 299.5 17.8 188 1-198 32-235 (253)
225 cd03245 ABCC_bacteriocin_expor 100.0 8.6E-36 1.9E-40 296.1 14.4 179 1-194 33-220 (220)
226 PRK10762 D-ribose transporter 100.0 2.9E-35 6.3E-40 326.9 19.8 190 1-198 281-481 (501)
227 PRK14238 phosphate transporter 100.0 2.3E-35 5.1E-40 302.3 17.6 188 1-198 53-252 (271)
228 PRK13549 xylose transporter AT 100.0 2E-35 4.3E-40 328.6 18.1 191 1-198 291-491 (506)
229 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 5.7E-36 1.2E-40 301.0 12.2 182 1-198 32-223 (238)
230 PRK13538 cytochrome c biogenes 100.0 3.1E-35 6.8E-40 288.9 17.1 171 1-185 30-202 (204)
231 PRK15134 microcin C ABC transp 100.0 2.9E-35 6.2E-40 329.0 18.9 188 1-198 315-512 (529)
232 PRK10261 glutathione transport 100.0 2.5E-35 5.4E-40 334.7 18.7 188 1-198 45-255 (623)
233 PRK15134 microcin C ABC transp 100.0 2.7E-35 5.9E-40 329.2 18.7 190 1-198 38-243 (529)
234 TIGR03269 met_CoM_red_A2 methy 100.0 3.3E-35 7.2E-40 327.9 19.4 189 1-198 29-255 (520)
235 PRK14246 phosphate ABC transpo 100.0 3.7E-35 8E-40 298.5 17.9 189 1-198 39-238 (257)
236 PRK14243 phosphate transporter 100.0 3.1E-35 6.7E-40 300.3 17.1 186 1-198 39-245 (264)
237 PRK14265 phosphate ABC transpo 100.0 4.2E-35 9E-40 300.8 17.9 186 1-198 49-255 (274)
238 PRK11174 cysteine/glutathione 100.0 1.1E-35 2.5E-40 336.6 15.1 181 1-198 379-569 (588)
239 PRK14257 phosphate ABC transpo 100.0 5.8E-35 1.3E-39 306.4 19.0 191 1-198 111-310 (329)
240 PRK14266 phosphate ABC transpo 100.0 4.4E-35 9.6E-40 296.8 17.5 192 1-198 32-231 (250)
241 cd03231 ABC_CcmA_heme_exporter 100.0 4.6E-35 1E-39 287.0 17.1 168 1-185 29-198 (201)
242 COG1123 ATPase components of v 100.0 4.3E-35 9.4E-40 316.0 18.4 192 1-198 38-241 (539)
243 PRK11288 araG L-arabinose tran 100.0 2.4E-35 5.3E-40 327.5 16.8 190 1-198 282-482 (501)
244 PRK15439 autoinducer 2 ABC tra 100.0 3.9E-35 8.5E-40 326.3 18.0 190 1-198 292-489 (510)
245 cd03254 ABCC_Glucan_exporter_l 100.0 1.1E-35 2.4E-40 297.1 12.2 183 1-198 32-223 (229)
246 PRK09580 sufC cysteine desulfu 100.0 6.7E-35 1.5E-39 295.0 18.0 193 1-198 30-232 (248)
247 PRK10247 putative ABC transpor 100.0 4.1E-35 8.9E-40 292.4 16.1 180 1-195 36-221 (225)
248 TIGR03269 met_CoM_red_A2 methy 100.0 4.5E-35 9.7E-40 326.9 18.2 186 1-198 313-514 (520)
249 TIGR02633 xylG D-xylose ABC tr 100.0 4.5E-35 9.7E-40 325.5 17.8 191 1-198 289-489 (500)
250 cd03230 ABC_DR_subfamily_A Thi 100.0 5.1E-35 1.1E-39 280.0 15.4 143 1-190 29-173 (173)
251 COG4604 CeuD ABC-type enteroch 100.0 8.6E-36 1.9E-40 278.5 9.3 190 1-199 30-223 (252)
252 COG1123 ATPase components of v 100.0 4.7E-35 1E-39 315.7 16.4 188 1-198 320-516 (539)
253 cd03215 ABC_Carb_Monos_II This 100.0 5.5E-35 1.2E-39 282.0 15.2 147 1-190 29-182 (182)
254 TIGR02324 CP_lyasePhnL phospho 100.0 1.4E-34 2.9E-39 288.4 18.5 175 1-186 37-223 (224)
255 COG1129 MglA ABC-type sugar tr 100.0 7.1E-35 1.5E-39 312.4 17.5 188 1-196 37-229 (500)
256 PRK11176 lipid transporter ATP 100.0 3.5E-35 7.5E-40 332.3 15.3 183 1-198 372-564 (582)
257 cd03253 ABCC_ATM1_transporter 100.0 2.5E-35 5.5E-40 295.9 12.3 182 1-198 30-221 (236)
258 PRK13546 teichoic acids export 100.0 2.7E-34 5.9E-39 292.8 20.0 177 1-198 53-229 (264)
259 PRK14252 phosphate ABC transpo 100.0 1.3E-34 2.8E-39 296.0 17.6 187 1-198 45-246 (265)
260 PRK13539 cytochrome c biogenes 100.0 1.3E-34 2.8E-39 285.2 16.1 169 1-186 31-199 (207)
261 cd03237 ABC_RNaseL_inhibitor_d 100.0 2.5E-34 5.4E-39 290.2 18.3 165 1-189 28-193 (246)
262 PRK14264 phosphate ABC transpo 100.0 2.2E-34 4.8E-39 299.8 18.5 194 1-198 74-286 (305)
263 cd03248 ABCC_TAP TAP, the Tran 100.0 2.7E-35 5.9E-40 293.8 11.1 179 1-190 43-226 (226)
264 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 7.6E-35 1.7E-39 335.3 15.9 179 1-198 482-670 (686)
265 KOG0055 Multidrug/pheromone ex 100.0 3.7E-33 7.9E-38 320.7 29.1 184 1-198 382-573 (1228)
266 PRK10790 putative multidrug tr 100.0 1.4E-34 3E-39 328.0 16.9 181 1-198 370-560 (592)
267 TIGR01189 ccmA heme ABC export 100.0 4.4E-34 9.5E-39 279.4 17.8 158 1-172 29-188 (198)
268 cd03229 ABC_Class3 This class 100.0 1.7E-34 3.7E-39 277.6 14.1 144 1-189 29-178 (178)
269 KOG0057 Mitochondrial Fe/S clu 100.0 6.3E-35 1.4E-39 308.9 11.8 181 1-198 381-571 (591)
270 PRK13545 tagH teichoic acids e 100.0 6E-34 1.3E-38 308.3 19.4 177 1-198 53-229 (549)
271 PRK09544 znuC high-affinity zi 100.0 2.9E-34 6.2E-39 290.8 16.0 171 1-198 33-206 (251)
272 cd03217 ABC_FeS_Assembly ABC-t 100.0 3.4E-34 7.4E-39 280.6 15.7 155 1-195 29-188 (200)
273 cd03289 ABCC_CFTR2 The CFTR su 100.0 2.2E-34 4.8E-39 294.7 14.9 181 1-198 33-222 (275)
274 PRK11160 cysteine/glutathione 100.0 1.6E-34 3.5E-39 325.8 15.0 182 1-198 369-559 (574)
275 cd03246 ABCC_Protease_Secretio 100.0 2.5E-34 5.3E-39 275.2 14.0 140 1-190 31-173 (173)
276 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.2E-34 2.6E-39 335.0 14.1 180 1-198 508-697 (710)
277 PRK13540 cytochrome c biogenes 100.0 6.6E-34 1.4E-38 278.6 17.0 166 1-183 30-197 (200)
278 cd03244 ABCC_MRP_domain2 Domai 100.0 2.5E-34 5.5E-39 285.7 14.3 178 1-195 33-220 (221)
279 PRK10938 putative molybdenum t 100.0 1.8E-34 3.9E-39 319.8 14.3 179 1-198 32-221 (490)
280 COG1132 MdlB ABC-type multidru 100.0 1.2E-34 2.7E-39 326.7 13.1 184 1-198 358-549 (567)
281 COG3845 ABC-type uncharacteriz 100.0 5.2E-34 1.1E-38 299.8 16.7 187 1-195 33-223 (501)
282 COG4987 CydC ABC-type transpor 100.0 7.1E-35 1.5E-39 308.4 9.8 182 1-198 367-558 (573)
283 TIGR01193 bacteriocin_ABC ABC- 100.0 1.9E-34 4.1E-39 333.1 13.8 182 1-198 503-694 (708)
284 KOG0058 Peptide exporter, ABC 100.0 1.2E-34 2.7E-39 316.6 11.4 184 1-198 497-688 (716)
285 PRK10535 macrolide transporter 100.0 7.2E-33 1.6E-37 315.7 25.7 186 1-198 37-229 (648)
286 TIGR03375 type_I_sec_LssB type 100.0 3E-34 6.5E-39 330.8 14.4 182 1-198 494-685 (694)
287 cd03369 ABCC_NFT1 Domain 2 of 100.0 8.5E-34 1.8E-38 279.3 15.4 168 1-196 37-207 (207)
288 PRK13657 cyclic beta-1,2-gluca 100.0 4.2E-34 9E-39 323.7 14.9 182 1-198 364-555 (588)
289 TIGR01842 type_I_sec_PrtD type 100.0 4.1E-34 8.9E-39 320.9 14.5 185 1-198 347-539 (544)
290 cd03247 ABCC_cytochrome_bd The 100.0 5.4E-34 1.2E-38 274.1 13.3 146 1-194 31-178 (178)
291 TIGR00958 3a01208 Conjugate Tr 100.0 3.5E-34 7.6E-39 330.3 13.7 180 1-198 510-699 (711)
292 TIGR02203 MsbA_lipidA lipid A 100.0 6.2E-34 1.3E-38 321.4 14.6 183 1-198 361-553 (571)
293 cd03214 ABC_Iron-Siderophores_ 100.0 5.8E-34 1.3E-38 274.4 11.7 149 1-194 28-180 (180)
294 COG4619 ABC-type uncharacteriz 100.0 2.9E-34 6.3E-39 261.8 8.6 176 1-190 32-212 (223)
295 cd03288 ABCC_SUR2 The SUR doma 100.0 7.5E-34 1.6E-38 289.0 12.5 181 1-198 50-240 (257)
296 cd03290 ABCC_SUR1_N The SUR do 100.0 3E-33 6.4E-38 277.6 16.2 173 1-189 30-218 (218)
297 PRK13541 cytochrome c biogenes 100.0 3.6E-33 7.7E-38 272.3 16.5 164 1-182 29-192 (195)
298 COG0396 sufC Cysteine desulfur 100.0 4.8E-33 1E-37 267.0 16.4 203 1-211 33-242 (251)
299 PRK15177 Vi polysaccharide exp 100.0 4E-33 8.8E-38 275.7 16.5 180 1-206 16-196 (213)
300 TIGR01846 type_I_sec_HlyB type 100.0 1.1E-33 2.3E-38 326.1 14.3 182 1-198 486-677 (694)
301 PRK10789 putative multidrug tr 100.0 1.2E-33 2.6E-38 318.5 14.3 182 1-198 344-535 (569)
302 PRK10982 galactose/methyl gala 100.0 3.2E-33 7E-38 309.8 16.7 190 1-198 277-477 (491)
303 TIGR02204 MsbA_rel ABC transpo 100.0 1.7E-33 3.7E-38 318.2 13.4 182 1-198 369-560 (576)
304 COG4586 ABC-type uncharacteriz 100.0 2.9E-33 6.3E-38 273.7 12.6 190 1-202 53-246 (325)
305 cd03250 ABCC_MRP_domain1 Domai 100.0 7E-33 1.5E-37 272.1 14.6 163 1-189 34-204 (204)
306 COG4172 ABC-type uncharacteriz 100.0 9.8E-33 2.1E-37 282.0 15.6 189 1-198 316-513 (534)
307 COG4618 ArpD ABC-type protease 100.0 3.6E-33 7.8E-38 292.9 12.8 188 1-202 365-560 (580)
308 cd03228 ABCC_MRP_Like The MRP 100.0 7.3E-33 1.6E-37 264.5 13.4 138 1-189 31-171 (171)
309 TIGR01192 chvA glucan exporter 100.0 5.9E-33 1.3E-37 313.6 14.3 182 1-198 364-555 (585)
310 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.6E-32 3.5E-37 278.2 15.4 177 1-195 29-221 (255)
311 PTZ00265 multidrug resistance 100.0 4.4E-33 9.5E-38 339.2 13.4 185 1-198 1197-1449(1466)
312 COG1119 ModF ABC-type molybden 100.0 7.9E-33 1.7E-37 268.6 11.2 186 2-195 61-256 (257)
313 PRK10938 putative molybdenum t 100.0 1.6E-32 3.5E-37 304.3 15.0 186 1-194 289-485 (490)
314 cd03216 ABC_Carb_Monos_I This 100.0 2.6E-32 5.6E-37 258.7 14.0 130 1-192 29-162 (163)
315 KOG0055 Multidrug/pheromone ex 100.0 2E-32 4.2E-37 314.8 14.2 184 1-198 1019-1210(1228)
316 cd03291 ABCC_CFTR1 The CFTR su 100.0 5.8E-32 1.3E-36 277.8 16.3 171 1-198 66-244 (282)
317 TIGR02868 CydC thiol reductant 100.0 2.4E-32 5.2E-37 305.7 14.6 157 1-171 364-529 (529)
318 PRK15064 ABC transporter ATP-b 100.0 5.3E-32 1.2E-36 302.7 17.2 179 1-198 30-239 (530)
319 TIGR02857 CydD thiol reductant 100.0 2.5E-32 5.5E-37 305.6 13.7 169 1-185 351-529 (529)
320 PRK13409 putative ATPase RIL; 100.0 7.4E-32 1.6E-36 302.9 17.5 171 1-198 368-539 (590)
321 KOG0059 Lipid exporter ABCA1 a 100.0 5E-32 1.1E-36 317.1 16.0 192 1-204 594-789 (885)
322 cd03223 ABCD_peroxisomal_ALDP 100.0 9.1E-32 2E-36 255.7 14.7 135 1-189 30-164 (166)
323 PRK11819 putative ABC transpor 100.0 9E-32 2E-36 302.3 16.9 178 1-198 36-247 (556)
324 PRK10522 multidrug transporter 100.0 7.1E-32 1.5E-36 302.8 15.7 174 1-194 352-531 (547)
325 PRK15064 ABC transporter ATP-b 100.0 8.8E-32 1.9E-36 301.0 16.3 171 1-198 348-522 (530)
326 COG1101 PhnK ABC-type uncharac 100.0 7.7E-32 1.7E-36 255.5 12.7 186 1-194 35-231 (263)
327 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.7E-31 3.8E-36 299.8 16.7 178 1-198 34-245 (552)
328 PLN03232 ABC transporter C fam 100.0 1.2E-31 2.6E-36 329.2 15.8 181 1-198 1265-1455(1495)
329 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.5E-31 3.2E-36 300.6 15.2 176 1-193 371-551 (555)
330 PLN03130 ABC transporter C fam 100.0 1.4E-31 3E-36 329.0 15.7 181 1-198 1268-1458(1622)
331 COG4674 Uncharacterized ABC-ty 100.0 6.2E-32 1.4E-36 252.3 8.7 188 2-198 35-232 (249)
332 PTZ00265 multidrug resistance 100.0 2.5E-31 5.5E-36 323.9 13.6 182 1-188 414-655 (1466)
333 PTZ00243 ABC transporter; Prov 100.0 4E-31 8.7E-36 324.5 15.4 181 1-198 1339-1530(1560)
334 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1E-30 2.2E-35 293.6 16.9 172 1-196 351-526 (552)
335 TIGR00957 MRP_assoc_pro multi 100.0 4.9E-31 1.1E-35 324.2 15.5 181 1-198 1315-1505(1522)
336 cd03222 ABC_RNaseL_inhibitor T 100.0 1.2E-30 2.5E-35 249.7 14.7 130 1-198 28-160 (177)
337 PRK11819 putative ABC transpor 100.0 1.1E-30 2.3E-35 293.5 16.6 172 1-196 353-528 (556)
338 COG4608 AppF ABC-type oligopep 100.0 8.7E-31 1.9E-35 259.6 13.3 153 1-198 42-196 (268)
339 COG4172 ABC-type uncharacteriz 100.0 3.9E-30 8.4E-35 263.0 16.2 193 1-198 39-244 (534)
340 PRK13409 putative ATPase RIL; 100.0 1.3E-30 2.7E-35 292.9 13.8 167 1-188 102-287 (590)
341 cd03238 ABC_UvrA The excision 100.0 3.3E-30 7.2E-35 246.4 14.5 145 1-195 24-171 (176)
342 KOG0056 Heavy metal exporter H 100.0 1.4E-31 3E-36 277.9 4.8 186 1-198 567-758 (790)
343 PRK10636 putative ABC transpor 100.0 2.7E-30 5.9E-35 293.9 15.5 170 1-198 341-514 (638)
344 TIGR01271 CFTR_protein cystic 100.0 2.4E-30 5.1E-35 317.4 15.6 180 1-198 1248-1437(1490)
345 COG4133 CcmA ABC-type transpor 100.0 5E-30 1.1E-34 239.0 12.9 159 2-173 32-192 (209)
346 COG4136 ABC-type uncharacteriz 100.0 4.4E-30 9.5E-35 230.3 11.4 163 1-172 31-196 (213)
347 PRK11147 ABC transporter ATPas 100.0 6.4E-30 1.4E-34 291.3 15.8 169 1-193 348-519 (635)
348 COG4167 SapF ABC-type antimicr 100.0 2.1E-29 4.6E-34 232.8 14.8 188 1-198 42-236 (267)
349 PLN03073 ABC transporter F fam 100.0 2.3E-29 4.9E-34 287.7 17.5 172 1-198 538-711 (718)
350 COG1134 TagH ABC-type polysacc 100.0 3.6E-29 7.9E-34 243.4 16.2 185 1-206 56-240 (249)
351 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.6E-29 3.4E-34 234.6 13.0 116 1-189 29-144 (144)
352 TIGR00954 3a01203 Peroxysomal 100.0 1.5E-29 3.3E-34 288.8 14.8 169 1-187 481-653 (659)
353 COG5265 ATM1 ABC-type transpor 100.0 3E-30 6.4E-35 265.6 6.5 184 1-198 292-483 (497)
354 PLN03232 ABC transporter C fam 100.0 2.7E-29 5.9E-34 308.5 15.1 172 1-198 646-825 (1495)
355 PRK10636 putative ABC transpor 100.0 4.1E-29 8.9E-34 284.2 15.3 178 1-198 30-233 (638)
356 PLN03130 ABC transporter C fam 100.0 3.7E-29 8E-34 307.7 14.7 171 1-198 646-825 (1622)
357 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.1E-28 2.5E-33 232.1 13.3 127 1-189 28-157 (157)
358 PRK11147 ABC transporter ATPas 100.0 1.5E-28 3.2E-33 280.1 15.6 176 1-198 32-240 (635)
359 TIGR01271 CFTR_protein cystic 100.0 3.4E-28 7.3E-33 298.4 16.7 173 1-198 455-633 (1490)
360 COG4107 PhnK ABC-type phosphon 100.0 7.6E-28 1.7E-32 220.8 13.2 185 1-198 35-238 (258)
361 TIGR00957 MRP_assoc_pro multi 100.0 4.5E-28 9.8E-33 298.2 15.4 175 1-198 667-847 (1522)
362 cd03271 ABC_UvrA_II The excisi 99.9 1.6E-27 3.4E-32 241.2 14.8 180 1-196 24-261 (261)
363 PTZ00243 ABC transporter; Prov 99.9 1.4E-27 3.1E-32 293.3 15.1 172 1-198 689-867 (1560)
364 cd03270 ABC_UvrA_I The excisio 99.9 6.1E-27 1.3E-31 233.6 16.4 100 88-194 118-226 (226)
365 COG0488 Uup ATPase components 99.9 3.6E-27 7.7E-32 259.1 16.0 175 1-195 32-234 (530)
366 cd03278 ABC_SMC_barmotin Barmo 99.9 8.8E-28 1.9E-32 234.5 9.1 155 1-187 25-190 (197)
367 COG4138 BtuD ABC-type cobalami 99.9 6.7E-28 1.5E-32 221.4 7.3 181 2-199 29-219 (248)
368 PF00005 ABC_tran: ABC transpo 99.9 3.5E-27 7.5E-32 216.4 10.2 121 1-140 14-137 (137)
369 KOG0054 Multidrug resistance-a 99.9 1E-24 2.2E-29 256.8 31.0 172 1-198 550-728 (1381)
370 PLN03073 ABC transporter F fam 99.9 4.4E-27 9.5E-32 269.0 8.7 184 1-198 206-428 (718)
371 cd03273 ABC_SMC2_euk Eukaryoti 99.9 7.4E-27 1.6E-31 236.8 7.4 176 1-186 28-242 (251)
372 cd03272 ABC_SMC3_euk Eukaryoti 99.9 2.9E-26 6.3E-31 231.2 10.8 173 1-186 26-234 (243)
373 COG1129 MglA ABC-type sugar tr 99.9 2.8E-25 6E-30 238.7 16.1 186 1-194 288-483 (500)
374 COG4778 PhnL ABC-type phosphon 99.9 1E-25 2.2E-30 206.3 10.2 177 1-187 40-227 (235)
375 cd03240 ABC_Rad50 The catalyti 99.9 1.3E-25 2.8E-30 220.5 8.9 156 1-187 25-197 (204)
376 cd03274 ABC_SMC4_euk Eukaryoti 99.9 7.1E-27 1.5E-31 230.7 -1.2 166 1-187 28-204 (212)
377 KOG0054 Multidrug resistance-a 99.9 4.7E-25 1E-29 259.7 12.8 181 1-198 1169-1359(1381)
378 cd03279 ABC_sbcCD SbcCD and ot 99.9 2.9E-25 6.3E-30 219.6 8.5 168 1-189 31-210 (213)
379 COG0488 Uup ATPase components 99.9 4.6E-24 9.9E-29 234.7 14.7 166 1-195 351-519 (530)
380 PRK00635 excinuclease ABC subu 99.9 1.2E-22 2.6E-27 245.3 17.7 135 56-198 759-903 (1809)
381 PF01061 ABC2_membrane: ABC-2 99.9 2.7E-24 5.9E-29 210.0 0.7 208 296-506 1-210 (210)
382 cd03275 ABC_SMC1_euk Eukaryoti 99.9 2.4E-23 5.1E-28 210.6 6.5 177 1-187 25-233 (247)
383 cd03276 ABC_SMC6_euk Eukaryoti 99.9 1.2E-22 2.7E-27 198.4 11.1 155 2-189 25-192 (198)
384 COG4615 PvdE ABC-type sideroph 99.9 9E-23 2E-27 208.5 8.3 174 2-194 353-530 (546)
385 PRK00349 uvrA excinuclease ABC 99.9 9.1E-22 2E-26 228.9 15.9 124 59-198 791-924 (943)
386 COG3845 ABC-type uncharacteriz 99.9 1.8E-21 4E-26 205.4 15.3 190 1-198 287-489 (501)
387 COG4178 ABC-type uncharacteriz 99.9 1.6E-21 3.4E-26 213.6 13.3 165 1-186 422-587 (604)
388 KOG0927 Predicted transporter 99.9 1.3E-21 2.9E-26 207.3 11.6 169 1-195 419-590 (614)
389 TIGR00630 uvra excinuclease AB 99.8 2.8E-20 6E-25 216.2 15.5 124 59-198 789-922 (924)
390 COG1245 Predicted ATPase, RNas 99.8 2.7E-20 5.9E-25 193.6 13.4 160 1-186 370-530 (591)
391 KOG0927 Predicted transporter 99.8 3.8E-20 8.2E-25 196.3 10.5 182 1-197 104-305 (614)
392 COG4170 SapD ABC-type antimicr 99.8 2.7E-20 5.9E-25 176.0 6.6 194 2-198 37-245 (330)
393 cd03277 ABC_SMC5_euk Eukaryoti 99.8 5.7E-20 1.2E-24 181.6 8.9 81 109-190 124-212 (213)
394 KOG0062 ATPase component of AB 99.8 3.4E-19 7.3E-24 188.2 11.7 170 1-197 109-281 (582)
395 COG1245 Predicted ATPase, RNas 99.8 1.3E-19 2.9E-24 188.4 7.8 163 1-186 103-287 (591)
396 cd03239 ABC_SMC_head The struc 99.8 8.4E-19 1.8E-23 168.4 11.8 74 112-187 95-172 (178)
397 cd03280 ABC_MutS2 MutS2 homolo 99.8 2.2E-19 4.9E-24 175.8 6.4 81 111-194 91-172 (200)
398 KOG0066 eIF2-interacting prote 99.8 9.4E-19 2E-23 180.6 9.7 145 1-172 616-762 (807)
399 KOG0062 ATPase component of AB 99.8 3.1E-18 6.7E-23 181.0 10.9 166 2-192 394-559 (582)
400 KOG0060 Long-chain acyl-CoA tr 99.7 3.1E-18 6.7E-23 183.1 10.8 172 1-187 464-641 (659)
401 cd03241 ABC_RecN RecN ATPase i 99.7 1.6E-18 3.6E-23 178.1 7.0 76 111-189 170-249 (276)
402 KOG2355 Predicted ABC-type tra 99.7 8.3E-18 1.8E-22 158.8 11.1 175 2-197 44-233 (291)
403 cd03227 ABC_Class2 ABC-type Cl 99.7 3.2E-18 6.8E-23 162.1 7.4 74 112-187 78-155 (162)
404 cd03283 ABC_MutS-like MutS-lik 99.7 2.5E-18 5.5E-23 168.1 6.6 121 1-172 28-149 (199)
405 PRK00349 uvrA excinuclease ABC 99.7 6.7E-18 1.5E-22 196.7 11.0 134 57-198 434-582 (943)
406 TIGR00630 uvra excinuclease AB 99.7 1.2E-17 2.5E-22 194.4 11.7 134 57-198 432-580 (924)
407 COG0178 UvrA Excinuclease ATPa 99.7 1.6E-16 3.6E-21 175.7 11.8 125 59-198 783-916 (935)
408 cd03285 ABC_MSH2_euk MutS2 hom 99.7 6.1E-17 1.3E-21 161.0 5.2 136 1-195 33-175 (222)
409 KOG0064 Peroxisomal long-chain 99.7 3.1E-16 6.7E-21 165.7 10.2 164 1-185 511-681 (728)
410 cd03242 ABC_RecF RecF is a rec 99.6 7.7E-16 1.7E-20 157.8 12.6 77 109-190 181-269 (270)
411 PRK00635 excinuclease ABC subu 99.6 7.2E-16 1.6E-20 187.2 11.6 134 57-198 424-569 (1809)
412 cd03243 ABC_MutS_homologs The 99.6 6.3E-16 1.4E-20 151.7 9.1 84 112-198 92-176 (202)
413 TIGR02858 spore_III_AA stage I 99.6 1.2E-15 2.7E-20 155.3 8.9 137 1-198 114-266 (270)
414 KOG0066 eIF2-interacting prote 99.6 6.6E-16 1.4E-20 159.7 4.0 183 2-195 294-493 (807)
415 COG2401 ABC-type ATPase fused 99.5 9.6E-15 2.1E-19 150.8 8.7 167 1-190 412-587 (593)
416 TIGR01247 drrB daunorubicin re 99.5 3.1E-12 6.7E-17 128.4 24.2 195 304-503 1-203 (236)
417 smart00534 MUTSac ATPase domai 99.5 7.8E-15 1.7E-19 141.9 4.0 77 111-190 61-139 (185)
418 cd03282 ABC_MSH4_euk MutS4 hom 99.5 1.9E-14 4.2E-19 141.1 6.4 120 1-172 32-152 (204)
419 cd03284 ABC_MutS1 MutS1 homolo 99.5 8.4E-14 1.8E-18 137.9 9.1 140 1-198 33-178 (216)
420 KOG0063 RNAse L inhibitor, ABC 99.5 1.2E-13 2.6E-18 143.2 8.3 164 2-197 371-535 (592)
421 TIGR03062 pip_yhgE_Cterm YhgE/ 99.4 4.9E-12 1.1E-16 124.4 17.7 151 385-597 57-207 (208)
422 TIGR00025 Mtu_efflux ABC trans 99.4 6.3E-11 1.4E-15 118.7 24.9 188 310-503 2-195 (232)
423 cd03281 ABC_MSH5_euk MutS5 hom 99.4 1.1E-12 2.4E-17 129.7 11.2 58 115-172 94-155 (213)
424 TIGR01291 nodJ ABC-2 type tran 99.4 1.7E-10 3.7E-15 117.2 26.3 201 298-504 7-216 (253)
425 PF02463 SMC_N: RecF/RecN/SMC 99.4 1.1E-12 2.4E-17 130.3 7.8 87 85-185 121-211 (220)
426 TIGR03861 phenyl_ABC_PedC alco 99.3 6.8E-10 1.5E-14 112.7 27.1 203 295-502 1-218 (253)
427 PTZ00132 GTP-binding nuclear p 99.3 2.1E-12 4.4E-17 127.8 8.3 45 115-159 156-205 (215)
428 KOG0063 RNAse L inhibitor, ABC 99.3 6.4E-12 1.4E-16 130.6 7.8 97 84-186 191-287 (592)
429 TIGR01069 mutS2 MutS2 family p 99.3 3.7E-12 7.9E-17 147.2 6.5 61 111-172 385-446 (771)
430 TIGR00634 recN DNA repair prot 99.3 4.5E-12 9.7E-17 142.9 6.8 77 110-189 439-519 (563)
431 PRK10869 recombination and rep 99.2 1.1E-11 2.3E-16 139.0 7.4 77 110-189 429-509 (553)
432 PHA02562 46 endonuclease subun 99.2 1.1E-11 2.5E-16 140.0 7.0 78 109-190 466-555 (562)
433 TIGR00618 sbcc exonuclease Sbc 99.2 1.9E-11 4E-16 147.4 8.6 81 107-188 946-1036(1042)
434 PF13304 AAA_21: AAA domain; P 99.2 3.8E-11 8.3E-16 119.5 9.2 63 110-172 235-300 (303)
435 PRK13695 putative NTPase; Prov 99.2 1.5E-11 3.3E-16 117.7 5.9 78 111-194 78-157 (174)
436 PRK15066 inner membrane transp 99.2 2.3E-08 4.9E-13 101.8 28.5 241 294-598 6-254 (257)
437 PRK00409 recombination and DNA 99.2 2E-11 4.3E-16 141.5 5.7 81 110-193 389-470 (782)
438 COG0178 UvrA Excinuclease ATPa 99.1 1.5E-10 3.2E-15 129.1 10.5 135 57-198 426-574 (935)
439 cd01124 KaiC KaiC is a circadi 99.1 2.5E-10 5.5E-15 109.9 9.1 77 110-186 70-163 (187)
440 TIGR02788 VirB11 P-type DNA tr 99.1 2.1E-09 4.5E-14 112.4 15.8 68 122-198 211-278 (308)
441 PRK10246 exonuclease subunit S 99.1 1.2E-10 2.7E-15 139.8 6.1 65 107-171 945-1017(1047)
442 cd03287 ABC_MSH3_euk MutS3 hom 99.1 1E-09 2.2E-14 109.0 11.1 63 116-180 97-161 (222)
443 cd01128 rho_factor Transcripti 99.0 1.3E-11 2.7E-16 124.6 -3.2 76 109-190 127-211 (249)
444 PRK03918 chromosome segregatio 99.0 2.8E-10 6.1E-15 135.4 7.0 78 108-187 785-868 (880)
445 cd01120 RecA-like_NTPases RecA 99.0 5.1E-10 1.1E-14 104.4 5.9 62 112-173 68-139 (165)
446 TIGR00606 rad50 rad50. This fa 99.0 1.1E-09 2.4E-14 134.7 9.9 69 110-179 1198-1277(1311)
447 PRK13830 conjugal transfer pro 99.0 4.4E-09 9.5E-14 123.3 14.0 68 126-194 649-726 (818)
448 COG3910 Predicted ATPase [Gene 99.0 2.8E-09 6.2E-14 100.2 9.8 64 108-172 126-189 (233)
449 COG0842 ABC-type multidrug tra 99.0 9.4E-08 2E-12 97.2 21.7 154 388-599 131-285 (286)
450 PRK08533 flagellar accessory p 99.0 7E-09 1.5E-13 103.8 12.9 59 112-170 96-162 (230)
451 cd01131 PilT Pilus retraction 98.9 6.9E-09 1.5E-13 101.5 12.3 57 121-186 66-122 (198)
452 PRK01156 chromosome segregatio 98.9 3.3E-09 7.2E-14 126.4 10.7 100 85-186 764-883 (895)
453 PRK07721 fliI flagellum-specif 98.9 9.6E-09 2.1E-13 111.5 12.8 157 1-198 161-340 (438)
454 TIGR02168 SMC_prok_B chromosom 98.8 3.7E-09 8E-14 129.3 8.0 76 108-186 1086-1165(1179)
455 cd00820 PEPCK_HprK Phosphoenol 98.8 2.3E-09 4.9E-14 93.5 4.0 57 1-68 18-77 (107)
456 PRK00064 recF recombination pr 98.8 6.9E-09 1.5E-13 110.8 6.2 78 109-190 271-359 (361)
457 cd03286 ABC_MSH6_euk MutS6 hom 98.8 1.8E-08 4E-13 99.8 8.8 57 116-172 96-154 (218)
458 PF06422 PDR_CDR: CDR ABC tran 98.8 1.2E-08 2.5E-13 88.9 5.6 62 533-600 15-77 (103)
459 PRK02224 chromosome segregatio 98.7 1.5E-08 3.3E-13 120.6 7.2 78 109-188 779-869 (880)
460 TIGR02169 SMC_prok_A chromosom 98.7 1.2E-08 2.7E-13 124.8 6.4 76 109-187 1072-1151(1164)
461 PRK13891 conjugal transfer pro 98.7 2.3E-07 5E-12 109.4 15.3 70 122-192 680-752 (852)
462 cd01125 repA Hexameric Replica 98.7 7.8E-08 1.7E-12 96.9 9.6 132 2-172 5-160 (239)
463 PRK06793 fliI flagellum-specif 98.6 8E-08 1.7E-12 103.7 9.4 141 1-196 159-306 (432)
464 TIGR01248 drrC daunorubicin re 98.6 1.3E-06 2.7E-11 81.9 15.4 129 371-502 16-146 (152)
465 PRK06067 flagellar accessory p 98.6 1.8E-07 3.8E-12 94.0 10.2 79 112-191 101-184 (234)
466 cd01130 VirB11-like_ATPase Typ 98.6 5.9E-07 1.3E-11 87.0 12.9 117 1-185 28-147 (186)
467 TIGR00611 recf recF protein. A 98.6 8.8E-08 1.9E-12 102.3 7.1 60 110-172 274-342 (365)
468 TIGR01420 pilT_fam pilus retra 98.6 5.3E-07 1.1E-11 95.8 12.7 57 121-186 187-243 (343)
469 smart00382 AAA ATPases associa 98.6 8.6E-07 1.9E-11 79.4 12.4 60 111-170 60-125 (148)
470 PRK06995 flhF flagellar biosyn 98.5 4E-07 8.6E-12 99.7 9.2 137 1-170 259-401 (484)
471 COG0419 SbcC ATPase involved i 98.5 2.3E-07 4.9E-12 110.7 7.5 85 101-187 803-897 (908)
472 cd02023 UMPK Uridine monophosp 98.5 1.7E-07 3.6E-12 91.6 4.9 112 1-144 2-113 (198)
473 PRK14079 recF recombination pr 98.4 2E-07 4.3E-12 99.2 5.1 74 111-192 263-345 (349)
474 TIGR02680 conserved hypothetic 98.3 1.2E-06 2.7E-11 107.8 7.4 59 109-170 1245-1315(1353)
475 TIGR02655 circ_KaiC circadian 98.2 1.8E-08 4E-13 111.7 -8.3 82 90-186 99-190 (484)
476 PRK13898 type IV secretion sys 98.2 9.5E-06 2.1E-10 95.6 13.2 52 125-177 638-690 (800)
477 PRK05399 DNA mismatch repair p 98.2 3E-06 6.5E-11 99.9 7.9 68 111-182 666-739 (854)
478 PRK13873 conjugal transfer ATP 98.2 1.7E-05 3.8E-10 93.6 14.0 67 126-193 632-701 (811)
479 PF12679 ABC2_membrane_2: ABC- 98.2 0.00093 2E-08 68.1 24.9 95 374-468 88-199 (277)
480 PF13558 SbcCD_C: Putative exo 98.2 4.6E-06 9.9E-11 70.9 6.4 47 110-156 31-90 (90)
481 PRK00454 engB GTP-binding prot 98.1 2.5E-05 5.5E-10 75.5 12.4 67 85-160 125-195 (196)
482 TIGR03518 ABC_perm_GldF glidin 98.1 0.0017 3.6E-08 65.5 24.2 187 299-499 2-208 (240)
483 COG1682 TagG ABC-type polysacc 98.0 0.0025 5.4E-08 65.1 24.6 206 294-507 16-225 (263)
484 TIGR03881 KaiC_arch_4 KaiC dom 98.0 5.6E-07 1.2E-11 89.9 -2.0 33 1-36 23-57 (229)
485 cd01876 YihA_EngB The YihA (En 98.0 1.2E-05 2.6E-10 74.8 7.0 64 85-157 100-169 (170)
486 PRK15176 Vi polysaccharide exp 97.9 0.0052 1.1E-07 62.9 25.3 69 436-507 158-229 (264)
487 PRK09825 idnK D-gluconate kina 97.9 4.3E-06 9.4E-11 80.2 2.5 62 1-68 6-69 (176)
488 PLN03210 Resistant to P. syrin 97.9 1.3E-05 2.8E-10 98.2 7.1 35 1-36 210-244 (1153)
489 TIGR02903 spore_lon_C ATP-depe 97.9 2.8E-05 6E-10 88.7 9.1 108 1-156 178-291 (615)
490 PRK14088 dnaA chromosomal repl 97.9 8E-05 1.7E-09 81.8 12.1 70 128-198 193-265 (440)
491 TIGR01026 fliI_yscN ATPase Fli 97.8 4.8E-05 1E-09 83.0 8.0 62 134-198 275-345 (440)
492 TIGR02524 dot_icm_DotB Dot/Icm 97.8 0.00011 2.4E-09 78.3 10.6 53 125-186 208-260 (358)
493 PF12698 ABC2_membrane_3: ABC- 97.8 4.6E-06 1E-10 86.7 0.0 126 370-501 183-313 (344)
494 cd00009 AAA The AAA+ (ATPases 97.8 8.1E-05 1.7E-09 67.2 8.2 55 117-172 72-131 (151)
495 TIGR00554 panK_bact pantothena 97.8 1.3E-05 2.9E-10 82.6 2.8 71 1-73 65-138 (290)
496 TIGR00152 dephospho-CoA kinase 97.8 8.1E-06 1.7E-10 79.1 1.1 72 114-187 60-132 (188)
497 TIGR03238 dnd_assoc_3 dnd syst 97.7 2.5E-05 5.5E-10 84.6 4.4 36 1-40 35-71 (504)
498 PRK11545 gntK gluconate kinase 97.7 8.5E-06 1.8E-10 77.2 0.5 59 4-68 1-61 (163)
499 PRK13764 ATPase; Provisional 97.7 8.1E-05 1.8E-09 83.7 8.1 64 126-197 321-401 (602)
500 PF00488 MutS_V: MutS domain V 97.7 0.0009 1.9E-08 67.3 14.6 52 127-180 120-173 (235)
No 1
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.2e-109 Score=927.20 Aligned_cols=551 Identities=43% Similarity=0.723 Sum_probs=491.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC-CceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE-SLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
+|||||||||||||||+|+|+...+ .++|+|++||++.+.+.+++.+|||.|||.++|+|||+|+|.|+|.+|+|+..+
T Consensus 59 ~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~ 138 (613)
T KOG0061|consen 59 LAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLS 138 (613)
T ss_pred EEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCC
Confidence 5899999999999999999999863 689999999998888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007474 80 KKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK 159 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~ 159 (602)
+++++++|++++++|||++|+||++|+...||+||||||||+||.+|++||+||||||||||||+.++.++++.||++|+
T Consensus 139 ~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~ 218 (613)
T KOG0061|consen 139 KEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLAR 218 (613)
T ss_pred HHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccchHHHHHHHcCCCCCCCCCchhHHHhhccccccCCCCcchhH
Q 007474 160 SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPATDFSLFFAEFGHPIPENENPCEFSLDLIRELEETPSGISSLV 239 (602)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~ 239 (602)
+|+|||+|+|||+++++++||++++|++|+++|+|++.+ +.+||++.|++||++.||+||++|+++.. ++.+...
T Consensus 219 ~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~-~~~ff~~~G~~~P~~~Npadf~l~l~s~~----~~~~~~~ 293 (613)
T KOG0061|consen 219 SGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRE-LLEFFSSLGFPCPELENPADFLLDLLSVD----SGTRELE 293 (613)
T ss_pred CCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHH-HHHHHHhCCCCCCCcCChHHHHHHHHccC----CCchhHH
Confidence 999999999999999999999999999999999999987 99999999999999999999999998843 1222233
Q ss_pred HHHHhhhhccCCcccCCCCCCCCcchHHHHHHHhhhccccccCCCCCCc-ccCCcHHHHHHHHHHHHHHHhhcChHHHHH
Q 007474 240 QFNKSWQMTRNPKMASDTDRQPDVDLEDAIEASISRGKLVSAGKNKNVQ-TFVNPFWTEMLFLSKRSNTNSRRMPELFGT 318 (602)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~~~L~~R~~~~~~Rd~~~~~~ 318 (602)
+..+.|+.....+. .+...+..........+. ...+ ....+||.|++.|++|.+++.+|||.+...
T Consensus 294 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--------~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~ 360 (613)
T KOG0061|consen 294 EAVRIAKLINKFSQ-----TDNLKKTLEALEKSLSTS--------KKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLL 360 (613)
T ss_pred hHHHHHHHhhhccc-----cchhhhhHHHHhhhcccc--------cccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHH
Confidence 33344433322110 000000000111111111 1111 116799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHH
Q 007474 319 RLGAQLVIACVLATLYWQLDDSPKGTRLRLAFVAFAMTTIFYN-CAREIPALLQERNIFIRETSYNAYRVSSYVLAHALA 397 (602)
Q Consensus 319 r~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~~f~~~~~~~~~-~~~~i~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~ 397 (602)
|+++.+++|+++|.+||++++++.++++|.|++|+.+.+..+. +..+++.|++||++|.||+.+|+|+.++||+|++++
T Consensus 361 r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~ 440 (613)
T KOG0061|consen 361 RLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLA 440 (613)
T ss_pred HHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998888554 556899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccC
Q 007474 398 SIPSMITLSLVFALTTFWAVGLAGGFSGFLFFFITMFASYWAGTSFMAFVAGFIPNIQIGFTIVVAILGLSLLFCGFYIS 477 (602)
Q Consensus 398 ~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~ 477 (602)
++|+.++.+++|++|+|||+|++++..+|++|++++++..++++++++++++.+||...|+.+++++++++++|+||+++
T Consensus 441 ~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~ 520 (613)
T KOG0061|consen 441 ELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFIN 520 (613)
T ss_pred HhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccchhhhhccChhHHHHHHHHhhhhCCCC-cccccCccccCCCCCCCCCChhhHHHHhhhccccccccCCcccccc
Q 007474 478 HDEIPSYWIWFHYVSLVKYPFQGALQNEYGDPN-RCFLTGLQFFDGTPFDGLPNSTKIELLQSMSNVLGRNITGSTCLTT 556 (602)
Q Consensus 478 ~~~ip~~~~Wl~yiSp~~y~~~~l~~nef~~~~-~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~C~~~ 556 (602)
.++||.||+|++|+|+++|++||++.|||.+.. .|... ....|..+
T Consensus 521 ~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~---------------------------------~~~~~~~~ 567 (613)
T KOG0061|consen 521 FDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLS---------------------------------GNLCCEST 567 (613)
T ss_pred cccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccC---------------------------------cCCccccc
Confidence 999999999999999999999999999999733 67311 01357789
Q ss_pred hHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q 007474 557 GMKILEQKGITDISKWKCIWILVAFGFLFRVLFYFTLLFGSKNKRR 602 (602)
Q Consensus 557 G~~~L~~~g~~~~~~w~~~~il~~~~~~f~~l~~~~L~~~~~~kr~ 602 (602)
|++++++.++++.+.|.|+.++++++++||+++|++|+++.|++|+
T Consensus 568 ~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~~ 613 (613)
T KOG0061|consen 568 GEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKRR 613 (613)
T ss_pred HHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 9999999999999999999999999999999999999999998775
No 2
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=5.5e-105 Score=902.70 Aligned_cols=557 Identities=35% Similarity=0.585 Sum_probs=486.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC-CceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE-SLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
++|+|||||||||||++|+|+.+++ ..+|+|.+||++++...+++.+|||+|+|.+++.+||+|||.|++.++.|...+
T Consensus 54 ~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~ 133 (617)
T TIGR00955 54 LAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVT 133 (617)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCC
Confidence 5899999999999999999998753 357999999999876567778999999999999999999999999998887778
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCC-CCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 80 KKRKRERVEALIDQLGLRSAAKTFIGDEQ-HRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~-~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
+++++++++++++.+||.+++|+.+|++. .++|||||||||+||++|+.+|++++|||||+|||+.++.++++.|++++
T Consensus 134 ~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~ 213 (617)
T TIGR00955 134 KKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLA 213 (617)
T ss_pred HHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999863 68999999999999999999999999999999999999999999999999
Q ss_pred hcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccchHHHHHHHcCCCCCCCCCchhHHHhhccccccCCCC-cch
Q 007474 159 KSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPATDFSLFFAEFGHPIPENENPCEFSLDLIRELEETPSG-ISS 237 (602)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~-~~~ 237 (602)
++|+|||+++|||+.+++++||++++|++|+++|.|++++ +.+||+++|++||++.||+||++++++...+.... .+.
T Consensus 214 ~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~-~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~ 292 (617)
T TIGR00955 214 QKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQ-AVPFFSDLGHPCPENYNPADFYVQVLAVIPGSENESRER 292 (617)
T ss_pred hCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHH-HHHHHHHcCCCCCCCCChHHHHHHHhhcCcccccchHHH
Confidence 8899999999999888999999999999999999999988 99999999999999999999999998754332211 122
Q ss_pred hHHHHHhhhhccCCcccCCCCCCCCcchHHHHHHHhh-hccccccCCCCCCcccCCcHHHHHHHHHHHHHHHhhcChHHH
Q 007474 238 LVQFNKSWQMTRNPKMASDTDRQPDVDLEDAIEASIS-RGKLVSAGKNKNVQTFVNPFWTEMLFLSKRSNTNSRRMPELF 316 (602)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~L~~R~~~~~~Rd~~~~ 316 (602)
..++.+.|+.+...+. ..+....... .+.............+..+|++|+++|++|++++.+|||.++
T Consensus 293 ~~~~~~~~~~s~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~ 361 (617)
T TIGR00955 293 IEKICDSFAVSDIGRD-----------MLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLL 361 (617)
T ss_pred HHHHHHHHhcchhhHH-----------HHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHH
Confidence 2334444544322211 1111110000 000000001112235678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhhHHHHHHhcCCCCChHHHHHHHH
Q 007474 317 GTRLGAQLVIACVLATLYWQLDDSPKGTRLRLAFVAFAMTTIFYNC-AREIPALLQERNIFIRETSYNAYRVSSYVLAHA 395 (602)
Q Consensus 317 ~~r~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~~f~~~~~~~~~~-~~~i~~~~~er~v~~rE~~~~~Y~~~~y~~a~~ 395 (602)
.+|+++++++|+++|++||+++++++++++|.|++|++++++.+.. +..++.++.||++|.||+.+|+|++++|++|++
T Consensus 362 ~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~ 441 (617)
T TIGR00955 362 KVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKT 441 (617)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHH
Confidence 9999999999999999999999999999999999999888777664 567899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccc
Q 007474 396 LASIPSMITLSLVFALTTFWAVGLAGGFSGFLFFFITMFASYWAGTSFMAFVAGFIPNIQIGFTIVVAILGLSLLFCGFY 475 (602)
Q Consensus 396 l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~ 475 (602)
++|+|+.++.+++|.+|+|||+|+++++.+|++|++++++..++++++|+++++++|+..+|..+++++++++++|+||+
T Consensus 442 l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~ 521 (617)
T TIGR00955 442 IAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFF 521 (617)
T ss_pred HHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccchhhhhccChhHHHHHHHHhhhhCCCC--cccccCccccCCCCCCCCCChhhHHHHhhhccccccccCCccc
Q 007474 476 ISHDEIPSYWIWFHYVSLVKYPFQGALQNEYGDPN--RCFLTGLQFFDGTPFDGLPNSTKIELLQSMSNVLGRNITGSTC 553 (602)
Q Consensus 476 i~~~~ip~~~~Wl~yiSp~~y~~~~l~~nef~~~~--~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~C 553 (602)
++.++||+||+|++|+||++|++||++.|||++.. +|... + .+..|
T Consensus 522 i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~--------~------------------------~~~~c 569 (617)
T TIGR00955 522 INSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSA--------N------------------------TTGPC 569 (617)
T ss_pred cChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCc--------C------------------------cCCCC
Confidence 99999999999999999999999999999998865 46210 0 12358
Q ss_pred ccchHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 007474 554 LTTGMKILEQKGITDISKWKCIWILVAFGFLFRVLFYFTLLFGSKNKR 601 (602)
Q Consensus 554 ~~~G~~~L~~~g~~~~~~w~~~~il~~~~~~f~~l~~~~L~~~~~~kr 601 (602)
..+|+++|+.+|++.++.|.|++++++++++|++++|++|+++.|++|
T Consensus 570 ~~~g~~~l~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 570 PSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred CcChHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 888999999999999999999999999999999999999999877665
No 3
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=2.6e-102 Score=881.46 Aligned_cols=550 Identities=28% Similarity=0.486 Sum_probs=456.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
+||+||||||||||||+|+|+.++...+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++.+...++
T Consensus 97 ~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~ 175 (659)
T PLN03211 97 LAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTK 175 (659)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCH
Confidence 58999999999999999999987654689999999987543 34568999999999999999999999988776655666
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKS 160 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~ 160 (602)
++++++++++++.+||++++|+++|+...++||||||||++||++|+.+|++|+|||||+|||+.++.++++.|++++++
T Consensus 176 ~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~ 255 (659)
T PLN03211 176 QEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQK 255 (659)
T ss_pred HHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhC
Confidence 77778899999999999999999999889999999999999999999999999999999999999999999999999988
Q ss_pred CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccchHHHHHHHcCCCCCCCCCchhHHHhhccccccCC-----CCc
Q 007474 161 GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPATDFSLFFAEFGHPIPENENPCEFSLDLIRELEETP-----SGI 235 (602)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~-----~~~ 235 (602)
|+|||+++|||+.+++++||++++|++|++++.|++++ +.+||+++|++||++.|||||++|+++...+.. +..
T Consensus 256 g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~-~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~ 334 (659)
T PLN03211 256 GKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSD-AMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKP 334 (659)
T ss_pred CCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHH-HHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccccc
Confidence 99999999999877999999999999999999999987 999999999999999999999999987432110 111
Q ss_pred chhHHHHHhhhhccCCcccCCCCCCCCcchHHHHHHHhhhccccccCCCCCCcccCCcHHHHHHHHHHHHHHHhhcChHH
Q 007474 236 SSLVQFNKSWQMTRNPKMASDTDRQPDVDLEDAIEASISRGKLVSAGKNKNVQTFVNPFWTEMLFLSKRSNTNSRRMPEL 315 (602)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~L~~R~~~~~~Rd~~~ 315 (602)
.......+.|+.....+....... . .............. ........+.+.++||+|+.+|++|++++ +||+.+
T Consensus 335 ~~~~~l~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~ 408 (659)
T PLN03211 335 NVKQSLVASYNTLLAPKVKAAIEM-S--HFPQANARFVGSAS--TKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESF 408 (659)
T ss_pred hHHHHHHHHHHhhccHHHHHHHhh-h--hhhcchhhhhhccc--ccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHH
Confidence 111122334432111100000000 0 00000000000000 00000111234578999999999999998 899999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHH-HHHhHHHHHHHhhHHHHHHhcCCCCChHHHHHHH
Q 007474 316 FGTRLGAQLVIACVLATLYWQLDDSPKGTRLRLAFVAFAMTTIFY-NCAREIPALLQERNIFIRETSYNAYRVSSYVLAH 394 (602)
Q Consensus 316 ~~~r~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~~f~~~~~~~~-~~~~~i~~~~~er~v~~rE~~~~~Y~~~~y~~a~ 394 (602)
..+|+++++++|+++|++||+++ +.++++|.|++||++.+..+ +++.+++.|+.||+||+||+.+|+|++++|++|+
T Consensus 409 ~~~r~~~~i~~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~ 486 (659)
T PLN03211 409 NTLRVFQVIAAALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMAR 486 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHH
Confidence 99999999999999999999985 67899999999998777554 5678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccc
Q 007474 395 ALASIPSMITLSLVFALTTFWAVGLAGGFSGFLFFFITMFASYWAGTSFMAFVAGFIPNIQIGFTIVVAILGLSLLFCGF 474 (602)
Q Consensus 395 ~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf 474 (602)
+++|+|+.++.+++|++|+|||+||++++.+|++|++++++..++++++|+++++++|+..+|+.+++++++++++|+||
T Consensus 487 ~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf 566 (659)
T PLN03211 487 IVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGF 566 (659)
T ss_pred HHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccchhhhhccChhHHHHHHHHhhhhCCCC------cccccCccccCCCCCCCCCChhhHHHHhhhcccccccc
Q 007474 475 YISHDEIPSYWIWFHYVSLVKYPFQGALQNEYGDPN------RCFLTGLQFFDGTPFDGLPNSTKIELLQSMSNVLGRNI 548 (602)
Q Consensus 475 ~i~~~~ip~~~~Wl~yiSp~~y~~~~l~~nef~~~~------~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 548 (602)
+++ +||+||+|++|+||++|+|||++.|||++.. .|.... | .
T Consensus 567 ~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~--------------------~----------~ 614 (659)
T PLN03211 567 YVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPH--------------------G----------S 614 (659)
T ss_pred hHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcc--------------------c----------C
Confidence 997 7999999999999999999999999998643 242100 0 0
Q ss_pred CCcccccchHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007474 549 TGSTCLTTGMKILEQKGITDISKWKCIWILVAFGFLFRVLFYFTLLFGS 597 (602)
Q Consensus 549 ~~~~C~~~G~~~L~~~g~~~~~~w~~~~il~~~~~~f~~l~~~~L~~~~ 597 (602)
....|...++.+++ +.+.|.|+++|++++++|++++|++|++++
T Consensus 615 ~~~~c~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 615 DRASCKFVEEDVAG-----QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred CCCCCccchhhhhc-----ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11346555555443 457999999999999999999999998764
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=9e-102 Score=937.39 Aligned_cols=581 Identities=22% Similarity=0.380 Sum_probs=490.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCC--CCceeEEEECCEeccc--ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEK--ESLKGTVTLNGAVLES--RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~--~~~~G~i~~~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~ 76 (602)
++|+||||||||||||+|+|+.++ .+.+|+|.+||++++. ...++.++||+|+|.+++.+||+|||.|+++++.|.
T Consensus 90 ~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~ 169 (1394)
T TIGR00956 90 TVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQ 169 (1394)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCC
Confidence 589999999999999999999742 2468999999998753 234566899999999999999999999999887653
Q ss_pred ----CCCHHHHHHH-HHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 007474 77 ----SVSKKRKRER-VEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVV 151 (602)
Q Consensus 77 ----~~~~~~~~~~-v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (602)
..++++..++ ++++++.+||++++|+++|++.+++|||||||||+||++|+.+|++++|||||+|||+.++.+++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~ 249 (1394)
T TIGR00956 170 NRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFI 249 (1394)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHH
Confidence 2344454444 57799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccchHHHHHHHcCCCCCCCCCchhHHHhhcccccc
Q 007474 152 KVLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPATDFSLFFAEFGHPIPENENPCEFSLDLIRELEE 230 (602)
Q Consensus 152 ~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~ 230 (602)
+.|++++++ |+|||+++|||+.+++++||++++|++|+++++|++++ +.+||+++|++||++.||+||+++++++.++
T Consensus 250 ~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~-~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~ 328 (1394)
T TIGR00956 250 RALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADK-AKQYFEKMGFKCPDRQTTADFLTSLTSPAER 328 (1394)
T ss_pred HHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHH-HHHHHHHcCCCCCCCCChHHHHHhccChhhh
Confidence 999999974 99999999999878999999999999999999999987 9999999999999999999999999875432
Q ss_pred C------CCCcchhHHHHHhhhhccCCcccCCCC----CC-CCcchHHHHHHHhhhccccccCCCCCCcccCCcHHHHHH
Q 007474 231 T------PSGISSLVQFNKSWQMTRNPKMASDTD----RQ-PDVDLEDAIEASISRGKLVSAGKNKNVQTFVNPFWTEML 299 (602)
Q Consensus 231 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 299 (602)
. ....+...++.+.|+++..++...++. .. +.....+.........+ + ........+..|+|+|++
T Consensus 329 ~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~s~~~Q~~ 405 (1394)
T TIGR00956 329 QIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQ--S-KRTRPSSPYTVSFSMQVK 405 (1394)
T ss_pred hccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhh--c-ccccCCCCCcCCHHHHHH
Confidence 1 112344567888888776433211000 00 00000011111000000 0 011123357789999999
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHH
Q 007474 300 FLSKRSNTNSRRMPELFGTRLGAQLVIACVLATLYWQLDDSPKGTRLRLAFVAFAMTTIFYNCAREIPALLQERNIFIRE 379 (602)
Q Consensus 300 ~L~~R~~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~i~~~~~er~v~~rE 379 (602)
+|++|++++.+|||.++.+|+++++++|+++|++||+++++++++++|.|++||++.+..++++..++.++.||+||+||
T Consensus 406 ~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re 485 (1394)
T TIGR00956 406 YCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKH 485 (1394)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeee
Confidence 99999999999999999999999999999999999999999999999999999999999888888899999999999999
Q ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 007474 380 TSYNAYRVSSYVLAHALASIPSMITLSLVFALTTFWAVGLAGGFSGFLFFFITMFASYWAGTSFMAFVAGFIPNIQIGFT 459 (602)
Q Consensus 380 ~~~~~Y~~~~y~~a~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~ 459 (602)
+++++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++|+..+|+.
T Consensus 486 ~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~ 565 (1394)
T TIGR00956 486 RKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMT 565 (1394)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCCCcccchhhhhccChhHHHHHHHHhhhhCCCC-cccccCccccCCCCCCCCCCh-hhHHHH
Q 007474 460 IVVAILGLSLLFCGFYISHDEIPSYWIWFHYVSLVKYPFQGALQNEYGDPN-RCFLTGLQFFDGTPFDGLPNS-TKIELL 537 (602)
Q Consensus 460 ~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~~~l~~nef~~~~-~C~~~~~~~~~~~~~~~~~~~-~~~~~~ 537 (602)
+++++++++++|+||++|.++||+||+|++|+||++|+|||++.|||++.. +|.. ..+.+| ++++. ..++.|
T Consensus 566 ~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~----~~p~g~--~y~~~~~~~~~C 639 (1394)
T TIGR00956 566 PAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQ----YVPSGG--GYDNLGVTNKVC 639 (1394)
T ss_pred HHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccc----cccCCC--CCCCCCccCccc
Confidence 999999999999999999999999999999999999999999999999988 8942 112222 11111 012345
Q ss_pred hhhccccccccCCcccccchHHHHh-hcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007474 538 QSMSNVLGRNITGSTCLTTGMKILE-QKGITDISKWKCIWILVAFGFLFRVLFYFTLLFGS 597 (602)
Q Consensus 538 ~~~~~~~g~~~~~~~C~~~G~~~L~-~~g~~~~~~w~~~~il~~~~~~f~~l~~~~L~~~~ 597 (602)
...++.+| .|.++|+++|+ .+|++++++|+|++|+++|+++|++++++++++.+
T Consensus 640 ~~~g~~~g------~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~ 694 (1394)
T TIGR00956 640 TVVGAEPG------QDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNK 694 (1394)
T ss_pred cCCCCcCC------cccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 55444443 45689999998 58999999999999999999999999999999876
No 5
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.4e-99 Score=916.33 Aligned_cols=575 Identities=25% Similarity=0.443 Sum_probs=487.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC-CceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE-SLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
+||+||||||||||||+|+|+.+++ ..+|+|.+||++++. .+++.+|||+|+|.+++.+||+|||.|++.++.|...+
T Consensus 792 ~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~ 870 (1394)
T TIGR00956 792 TALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVS 870 (1394)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCC
Confidence 5899999999999999999998642 356999999999853 46777999999999999999999999999888776667
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCc-EEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 80 KKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPI-LLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~-lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
+++++++++++++.+||.+++|+.+|+.. ++|||||||||+||++|+.+|+ +|||||||+|||+.++..+++.|++++
T Consensus 871 ~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la 949 (1394)
T TIGR00956 871 KSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLA 949 (1394)
T ss_pred HHHHHHHHHHHHHHcCChhhCCCeeCCCC-CCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHH
Confidence 77888899999999999999999998643 3799999999999999999997 999999999999999999999999999
Q ss_pred hcCcEEEEEEcCCcHHHHHHhhHHhhhcCC-ceeecCCccc---hHHHHHHHcCC-CCCCCCCchhHHHhhccccccCCC
Q 007474 159 KSGSVVIMSIHQPSYRIFSLLNRLIFLSHG-QTVYSGTPAT---DFSLFFAEFGH-PIPENENPCEFSLDLIRELEETPS 233 (602)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G-~iv~~G~~~~---~~~~~f~~~g~-~~p~~~n~ad~~~~~~~~~~~~~~ 233 (602)
++|+|||+++|||+..+++.||++++|++| +++++|++.+ .+.+||++.|+ +||++.|||||++|+++......
T Consensus 950 ~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~- 1028 (1394)
T TIGR00956 950 DHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAH- 1028 (1394)
T ss_pred HcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccc-
Confidence 899999999999997678999999999987 9999999742 37899999995 99999999999999987432211
Q ss_pred CcchhHHHHHhhhhccCCcccCCCCCCCCcchHHHHHHHhhh-ccccccCCCCCCcccCCcHHHHHHHHHHHHHHHhhcC
Q 007474 234 GISSLVQFNKSWQMTRNPKMASDTDRQPDVDLEDAIEASISR-GKLVSAGKNKNVQTFVNPFWTEMLFLSKRSNTNSRRM 312 (602)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~q~~~L~~R~~~~~~Rd 312 (602)
...++.+.|+.+.+.+. ..+........ .+..........++++.|||+|+++|++|++++.|||
T Consensus 1029 ---~~~~~~~~~~~s~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~ 1094 (1394)
T TIGR00956 1029 ---ANQDYHEVWRNSSEYQA-----------VKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRT 1094 (1394)
T ss_pred ---hhccHHHHHhcCHHHHH-----------HHHHHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcC
Confidence 11345667765543321 11111110000 0000000011224678899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHH-HHHhcCCCCChHHHH
Q 007474 313 PELFGTRLGAQLVIACVLATLYWQLDDSPKGTRLRLAFVAFAMTTIFYNCAREIPALLQERNIF-IRETSYNAYRVSSYV 391 (602)
Q Consensus 313 ~~~~~~r~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~i~~~~~er~v~-~rE~~~~~Y~~~~y~ 391 (602)
|.++.+|+++++++|+++|++||++++++.++++|+|++|+.+.+..+.....+|.|+.||.+| +||+.+|+|++++|+
T Consensus 1095 ~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~ 1174 (1394)
T TIGR00956 1095 PDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFI 1174 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHH
Confidence 9999999999999999999999999999999999999999888777666667899999999886 899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhcccCCCCchHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007474 392 LAHALASIPSMITLSLVFALTTFWAVGLAGGFSG-------FLFFFITMFASYWAGTSFMAFVAGFIPNIQIGFTIVVAI 464 (602)
Q Consensus 392 ~a~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~-------f~~f~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~ 464 (602)
+|++++|+|+.++.+++|.+|+|||+||++++.. |++|++++++..++++++|+++++++|+..+|..+++++
T Consensus 1175 ~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~ 1254 (1394)
T TIGR00956 1175 AAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLL 1254 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999988766 999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccCCCCcccchhhhhccChhHHHHHHHHhhhhCCCC-cccccCccccCCCCCCCCCChhhHHHHhh----
Q 007474 465 LGLSLLFCGFYISHDEIPSYWIWFHYVSLVKYPFQGALQNEYGDPN-RCFLTGLQFFDGTPFDGLPNSTKIELLQS---- 539 (602)
Q Consensus 465 ~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~~~l~~nef~~~~-~C~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 539 (602)
++++++|+||+++.++||.||+|++|+||++|+++|++.|||++.+ +|...+...++|++ + ..|.++++.
T Consensus 1255 ~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~-~----~tC~~y~~~~~~~ 1329 (1394)
T TIGR00956 1255 FTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPS-G----QTCGEYMKPYLEN 1329 (1394)
T ss_pred HHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCC-C----CCHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999988 99887777776533 2 234444433
Q ss_pred hccccccccC---Ccccc-cchHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 007474 540 MSNVLGRNIT---GSTCL-TTGMKILEQKGITDISKWKCIWILVAFGFLFRVLFYFTLLFGSK 598 (602)
Q Consensus 540 ~~~~~g~~~~---~~~C~-~~G~~~L~~~g~~~~~~w~~~~il~~~~~~f~~l~~~~L~~~~~ 598 (602)
.++..-...+ +..|+ .+|+++|+.+|++.+++|+|++|+++|++++ ++++++|+++.|
T Consensus 1330 ~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~~r 1391 (1394)
T TIGR00956 1330 AGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWLAR 1391 (1394)
T ss_pred CCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HHHHHhhheEEE
Confidence 2222211112 34455 7999999999999999999999999999988 888888988754
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=4.6e-99 Score=910.75 Aligned_cols=550 Identities=25% Similarity=0.427 Sum_probs=477.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
+|||||||||||||||+|+|+.+++..+|+|.+||++.+...+++.+|||+|+|.+++.+||+|||.|++.+++|...++
T Consensus 909 ~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~ 988 (1470)
T PLN03140 909 TALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSK 988 (1470)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCH
Confidence 58999999999999999999977556789999999987644556778999999999999999999999998887766677
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKS 160 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~ 160 (602)
++++++++++++.+||.+++|+++|++.+++|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++
T Consensus 989 ~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~ 1068 (1470)
T PLN03140 989 EEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1068 (1470)
T ss_pred HHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 77788999999999999999999998878899999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEcCCcHHHHHHhhHHhhhcC-CceeecCCcc---chHHHHHHHc-CC-CCCCCCCchhHHHhhccccccCCCC
Q 007474 161 GSVVIMSIHQPSYRIFSLLNRLIFLSH-GQTVYSGTPA---TDFSLFFAEF-GH-PIPENENPCEFSLDLIRELEETPSG 234 (602)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv~~G~~~---~~~~~~f~~~-g~-~~p~~~n~ad~~~~~~~~~~~~~~~ 234 (602)
|+|||+++|||+.++++.||++++|++ |+++|+|++. +.+.+||+++ |. +||++.|||||++|+++...+.
T Consensus 1069 g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~--- 1145 (1470)
T PLN03140 1069 GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV--- 1145 (1470)
T ss_pred CCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc---
Confidence 999999999999778999999999996 8999999974 2389999998 66 4999999999999998643221
Q ss_pred cchhHHHHHhhhhccCCcccCCCCCCCCcchHHHHHHHhhhccccccCCCCCCcccCCcHHHHHHHHHHHHHHHhhcChH
Q 007474 235 ISSLVQFNKSWQMTRNPKMASDTDRQPDVDLEDAIEASISRGKLVSAGKNKNVQTFVNPFWTEMLFLSKRSNTNSRRMPE 314 (602)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~L~~R~~~~~~Rd~~ 314 (602)
+...++.+.|+++..++. ..+..... ....... .......++..++|+|+++|++|+++++||||.
T Consensus 1146 -~~~~d~~~~~~~s~~~~~-----------~~~~~~~~-~~~~~~~-~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~ 1211 (1470)
T PLN03140 1146 -KLGIDFAEHYKSSSLYQR-----------NKALVKEL-STPPPGA-SDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPD 1211 (1470)
T ss_pred -cccchHHHHHhccHHHHH-----------HHHHHHHh-ccCCCCc-cccccCccccCCHHHHHHHHHHHHHHHHHCCHh
Confidence 122357778877654432 11111111 0000000 001112467889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhhHHHHHHhcCCCCChHHH
Q 007474 315 LFGTRLGAQLVIACVLATLYWQLDDSP---KGTRLRLAFVAFAMTTIFYNC-AREIPALLQERNIFIRETSYNAYRVSSY 390 (602)
Q Consensus 315 ~~~~r~~~~i~~~li~G~~f~~~~~~~---~~~~~~~g~~f~~~~~~~~~~-~~~i~~~~~er~v~~rE~~~~~Y~~~~y 390 (602)
++.+|+++++++|+++|++||++++++ .+++++.|++|+++.+..+.. .+.+|.+..||+||+||+++|+|++++|
T Consensus 1212 ~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y 1291 (1470)
T PLN03140 1212 YNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPY 1291 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH
Confidence 999999999999999999999999765 577889999998888776654 4678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 007474 391 VLAHALASIPSMITLSLVFALTTFWAVGLAGGFSGFLFFFITMFASYWAGTSFMAFVAGFIPNIQIGFTIVVAILGLSLL 470 (602)
Q Consensus 391 ~~a~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~l 470 (602)
++|++++|+|+.++.+++|.+|+|||+||++++.+|++|+++++++.++++++|+++++++|+.++|..+++++++++++
T Consensus 1292 ~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~l 1371 (1470)
T PLN03140 1292 AIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNL 1371 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCCcccchhhhhccChhHHHHHHHHhhhhCCCC-cccccCccccCCCCCCCCCChhhHHHHhhhccccccccC
Q 007474 471 FCGFYISHDEIPSYWIWFHYVSLVKYPFQGALQNEYGDPN-RCFLTGLQFFDGTPFDGLPNSTKIELLQSMSNVLGRNIT 549 (602)
Q Consensus 471 f~Gf~i~~~~ip~~~~Wl~yiSp~~y~~~~l~~nef~~~~-~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 549 (602)
|+||++|.++||+||+|++|+||++|+++|++.|||+|.+ .|. +++.+
T Consensus 1372 f~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~------~~~~~------------------------- 1420 (1470)
T PLN03140 1372 FSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIK------VPGGA------------------------- 1420 (1470)
T ss_pred HeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCccc------CCCCC-------------------------
Confidence 9999999999999999999999999999999999999877 552 11000
Q ss_pred CcccccchHHH-HhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 007474 550 GSTCLTTGMKI-LEQKGITDISKWKCIWILVAFGFLFRVLFYFTLLFGSKNKR 601 (602)
Q Consensus 550 ~~~C~~~G~~~-L~~~g~~~~~~w~~~~il~~~~~~f~~l~~~~L~~~~~~kr 601 (602)
...+++++ ++.|||++++.|++++|+++|+++|++++++++++.+++||
T Consensus 1421 ---~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1421 ---PDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred ---CCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 00245666 57899999999999999999999999999999999999887
No 7
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.2e-100 Score=868.03 Aligned_cols=555 Identities=29% Similarity=0.491 Sum_probs=490.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
+||||+||||||||||+||||...+.++|+|++||.|.+.+.++|.+|||.|+|.|.|.+||+|.|.|+|.+|+|..++.
T Consensus 820 TALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~ 899 (1391)
T KOG0065|consen 820 TALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSD 899 (1391)
T ss_pred eehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCH
Confidence 58999999999999999999998888999999999999877889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDP-ILLFLDEPTSGLDSTSAFKVVKVLGEIAK 159 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p-~lllLDEPtsgLD~~~~~~i~~~l~~l~~ 159 (602)
+++.+.|+++++.++|++++|..||.+. +|||.+||||++||++|+.|| .||||||||||||+.++..+++.+|++++
T Consensus 900 ~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~ 978 (1391)
T KOG0065|consen 900 EEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD 978 (1391)
T ss_pred HHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988 999999999999999999999 89999999999999999999999999999
Q ss_pred cCcEEEEEEcCCcHHHHHHhhHHhhhcC-CceeecCCccch---HHHHHHHcC-CCCCCCCCchhHHHhhccccccCCCC
Q 007474 160 SGSVVIMSIHQPSYRIFSLLNRLIFLSH-GQTVYSGTPATD---FSLFFAEFG-HPIPENENPCEFSLDLIRELEETPSG 234 (602)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv~~G~~~~~---~~~~f~~~g-~~~p~~~n~ad~~~~~~~~~~~~~~~ 234 (602)
.|+||+||+|||+.++++.||++++|++ |++||+|+..+. +.+||+++| .+||+..|||||++|++....+..
T Consensus 979 tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~-- 1056 (1391)
T KOG0065|consen 979 TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEAS-- 1056 (1391)
T ss_pred cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccc--
Confidence 9999999999999999999999999986 799999998763 568999996 899988899999999987543321
Q ss_pred cchhHHHHHhhhhccCCcccCCCCCCCCcchHHHHHHHhhhccccccCCCCCCcccCCcHHHHHHHHHHHHHHHhhcChH
Q 007474 235 ISSLVQFNKSWQMTRNPKMASDTDRQPDVDLEDAIEASISRGKLVSAGKNKNVQTFVNPFWTEMLFLSKRSNTNSRRMPE 314 (602)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~L~~R~~~~~~Rd~~ 314 (602)
.-.+|.+.|+++.+++. ..+.+......... ........++|+.|+|.|++.++||++..+||+|.
T Consensus 1057 --~~~D~a~~w~~S~e~k~-----------~~e~v~~l~~~~~~-~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~ 1122 (1391)
T KOG0065|consen 1057 --LSVDFAEIWKNSEEYKR-----------NKELVKELSQPPPG-FSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPD 1122 (1391)
T ss_pred --cCccHHHHHhccHHHHH-----------HHHHHHHHhcCCcc-CCcccccccccchhHHHHHHHHHHHHHHHHhCCcH
Confidence 22378899998887753 22222221111100 11122334568899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHhH-HHHHHHhhHHHHHHhcCCCCChHHHHHH
Q 007474 315 LFGTRLGAQLVIACVLATLYWQLDDSPKGTRLRLAFVAFAMTTIFYNCARE-IPALLQERNIFIRETSYNAYRVSSYVLA 393 (602)
Q Consensus 315 ~~~~r~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~-i~~~~~er~v~~rE~~~~~Y~~~~y~~a 393 (602)
++.+|++..++.|+++|+.||+++.+.+++||.+|++|+.+.+......+. .+.+..||.+++||+++|+||+.+|++|
T Consensus 1123 y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~a 1202 (1391)
T KOG0065|consen 1123 YLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALA 1202 (1391)
T ss_pred HHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHH
Confidence 999999999999999999999999999999999999999988776665554 4556679999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcc
Q 007474 394 HALASIPSMITLSLVFALTTFWAVGLAGGFSGFLFFFITMFASYWAGTSFMAFVAGFIPNIQIGFTIVVAILGLSLLFCG 473 (602)
Q Consensus 394 ~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G 473 (602)
++++|+|+.++++++|.+++|+|+|+..++.+|++|++.+++..++.+.+|+++.+++||.++|..+.+.+..++.+|||
T Consensus 1203 q~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G 1282 (1391)
T KOG0065|consen 1203 QVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSG 1282 (1391)
T ss_pred HHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcccchhhhhccChhHHHHHHHHhhhhCCCC-cccccCccccCCCCCCCCCChhhHHHHhh-hcccccccc---
Q 007474 474 FYISHDEIPSYWIWFHYVSLVKYPFQGALQNEYGDPN-RCFLTGLQFFDGTPFDGLPNSTKIELLQS-MSNVLGRNI--- 548 (602)
Q Consensus 474 f~i~~~~ip~~~~Wl~yiSp~~y~~~~l~~nef~~~~-~C~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~--- 548 (602)
+++|.+.||.||+|++|+||+.|-.++++..+++|.+ .|...+...++|++ +..+.+++.. .++..|...
T Consensus 1283 ~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~-----g~tcge~m~~~~~~~~Gy~~n~~ 1357 (1391)
T KOG0065|consen 1283 FLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPS-----GQTCGEFMEDFFGEGTGYLHNPL 1357 (1391)
T ss_pred cccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCC-----CcCHHHHHHHHhccCcceeccCc
Confidence 9999999999999999999999999999999999988 99877766555432 2345666665 332333321
Q ss_pred ---CCcccc-cchHHHHhhcCCCCCChhHHHHH
Q 007474 549 ---TGSTCL-TTGMKILEQKGITDISKWKCIWI 577 (602)
Q Consensus 549 ---~~~~C~-~~G~~~L~~~g~~~~~~w~~~~i 577 (602)
+...|. ..++++|..+++...|+|+|+||
T Consensus 1358 a~~~c~~c~y~v~~~~l~~f~~~y~~~wrnfgi 1390 (1391)
T KOG0065|consen 1358 ATTACVYCAYTVADAFLAAFNIKYLNFWRNFGI 1390 (1391)
T ss_pred ceeEEEEeeeehHHHHHHHHHHHHHHHHHhhcc
Confidence 234565 67999999999999999999987
No 8
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.7e-98 Score=905.83 Aligned_cols=549 Identities=25% Similarity=0.418 Sum_probs=470.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC-CceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCC---
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE-SLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPR--- 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~--- 76 (602)
++|+||||||||||||+|+|++++. ..+|+|.+||+++++...++.++||+|+|.+++++||+|||.|+++++.+.
T Consensus 194 ~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~ 273 (1470)
T PLN03140 194 TLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRY 273 (1470)
T ss_pred EEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcc
Confidence 5899999999999999999998753 357999999998865444677999999999999999999999998876321
Q ss_pred ----CCCHHHH------------------------HHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhh
Q 007474 77 ----SVSKKRK------------------------RERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIH 128 (602)
Q Consensus 77 ----~~~~~~~------------------------~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~ 128 (602)
..+++++ +..++++++.+||++++||.+|+..+++|||||||||+||++|+.
T Consensus 274 ~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~ 353 (1470)
T PLN03140 274 DLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVG 353 (1470)
T ss_pred cchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcC
Confidence 1112221 124678999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccchHHHHHHHc
Q 007474 129 DPILLFLDEPTSGLDSTSAFKVVKVLGEIAK-SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPATDFSLFFAEF 207 (602)
Q Consensus 129 ~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~~f~~~ 207 (602)
+|+++||||||+|||+.++.++++.|+++++ .|+|||+++|||+.+++++||+|++|++|+++|+|++++ +.+||+++
T Consensus 354 ~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~-~~~yF~~l 432 (1470)
T PLN03140 354 PTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDH-ILEFFESC 432 (1470)
T ss_pred CCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHH-HHHHHHHc
Confidence 9999999999999999999999999999987 589999999999888999999999999999999999887 99999999
Q ss_pred CCCCCCCCCchhHHHhhccccccCC-----CC---cchhHHHHHhhhhccCCcccCCCCCCCCcchHHHHHHHhhhcccc
Q 007474 208 GHPIPENENPCEFSLDLIRELEETP-----SG---ISSLVQFNKSWQMTRNPKMASDTDRQPDVDLEDAIEASISRGKLV 279 (602)
Q Consensus 208 g~~~p~~~n~ad~~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (602)
|++||+++|||||+++++++.++.. +. ..+..++.+.|+++...+. +.+.......+.+
T Consensus 433 Gf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~-----------~~~~~~~~~~~~~-- 499 (1470)
T PLN03140 433 GFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQ-----------LENELSVPFDKSQ-- 499 (1470)
T ss_pred CCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHH-----------HHHHHhhhhhhhh--
Confidence 9999999999999999988533211 11 1345567777876654322 1111111100000
Q ss_pred ccCCCCCCcccCCcHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHHHHH
Q 007474 280 SAGKNKNVQTFVNPFWTEMLFLSKRSNTNSRRMPELFGTRLGAQLVIACVLATLYWQLDDSP---KGTRLRLAFVAFAMT 356 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~~~~~~---~~~~~~~g~~f~~~~ 356 (602)
........+.|..+++.|++.+++|++++++||+.++..|+++.+++|+++|++||+++.++ .+.+.+.|++||++.
T Consensus 500 ~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l 579 (1470)
T PLN03140 500 SHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMI 579 (1470)
T ss_pred cccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHH
Confidence 00001123457889999999999999999999999999999999999999999999997543 345677888889888
Q ss_pred HHHHHHHhHHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhcccCCCCchHHHHHHHHHHHHH
Q 007474 357 TIFYNCAREIPALLQERNIFIRETSYNAYRVSSYVLAHALASIPSMITLSLVFALTTFWAVGLAGGFSGFLFFFITMFAS 436 (602)
Q Consensus 357 ~~~~~~~~~i~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~~~ 436 (602)
+.++.++..++.++.||+||+|||++++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++
T Consensus 580 ~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~ 659 (1470)
T PLN03140 580 INMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLI 659 (1470)
T ss_pred HHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCcccchhhhhccChhHHHHHHHHhhhhCCCC-ccccc
Q 007474 437 YWAGTSFMAFVAGFIPNIQIGFTIVVAILGLSLLFCGFYISHDEIPSYWIWFHYVSLVKYPFQGALQNEYGDPN-RCFLT 515 (602)
Q Consensus 437 ~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~~~l~~nef~~~~-~C~~~ 515 (602)
.++++++++++++++|++.+|+.+++++++++++|+||+||.++||+||+|++|+||++||+||++.|||.+.. .|.
T Consensus 660 ~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~-- 737 (1470)
T PLN03140 660 QQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNK-- 737 (1470)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCc--
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997654 110
Q ss_pred CccccCCCCCCCCCChhhHHHHhhhccccccccCCcccccchHHHHhhcCCCCCC--hhHHHHHHHHHHHHHHHHHHHHH
Q 007474 516 GLQFFDGTPFDGLPNSTKIELLQSMSNVLGRNITGSTCLTTGMKILEQKGITDIS--KWKCIWILVAFGFLFRVLFYFTL 593 (602)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~C~~~G~~~L~~~g~~~~~--~w~~~~il~~~~~~f~~l~~~~L 593 (602)
.+. +.+.+.|+++|+.+|+..++ +|+++++|++|+++|++++|++|
T Consensus 738 ---~~~-----------------------------~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L 785 (1470)
T PLN03140 738 ---MAS-----------------------------DNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLAL 785 (1470)
T ss_pred ---ccC-----------------------------CCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 000 01236899999999998654 58999999999999999999999
Q ss_pred Hhcc
Q 007474 594 LFGS 597 (602)
Q Consensus 594 ~~~~ 597 (602)
++.+
T Consensus 786 ~~~~ 789 (1470)
T PLN03140 786 TYLN 789 (1470)
T ss_pred HhcC
Confidence 9876
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.2e-92 Score=803.53 Aligned_cols=569 Identities=27% Similarity=0.478 Sum_probs=499.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC-CceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC--
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE-SLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS-- 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~-- 77 (602)
+.++||+||||||||++|+|.++.. ..+|+|.+||.+.+....++.++|..|+|.|+|.|||+|+|.|+++|+.|..
T Consensus 144 ~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~ 223 (1391)
T KOG0065|consen 144 TLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRY 223 (1391)
T ss_pred EEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCcccc
Confidence 3689999999999999999998742 2368999999998765457789999999999999999999999999998732
Q ss_pred --CCHHHHHH-HHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 007474 78 --VSKKRKRE-RVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVL 154 (602)
Q Consensus 78 --~~~~~~~~-~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (602)
.++.++.+ ..|.+++.+||++|+||+||+..+||+||||||||++|.+++.+|+++++||+|+|||+.++.++++.|
T Consensus 224 ~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~l 303 (1391)
T KOG0065|consen 224 DEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKAL 303 (1391)
T ss_pred ccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHH
Confidence 33333332 678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccchHHHHHHHcCCCCCCCCCchhHHHhhccccccCC-
Q 007474 155 GEIAK-SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPATDFSLFFAEFGHPIPENENPCEFSLDLIRELEETP- 232 (602)
Q Consensus 155 ~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~- 232 (602)
|++++ .+.|+++++|||+.+++++||+|++|++|++||+||.++ +.+||+++|+.||+++++|||+.+++++..+..
T Consensus 304 r~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~-~~~yFe~~Gf~cP~r~~~ADfLt~vts~k~~~~~ 382 (1391)
T KOG0065|consen 304 RQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDE-VLPYFEDMGFKCPPRKGTADFLTEVTSKKDQEQY 382 (1391)
T ss_pred HHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHH-HHHHHHhcCccCCCccCHHHHHHHhhcCcccccc
Confidence 99998 489999999999999999999999999999999999988 999999999999999999999999998322211
Q ss_pred -------CCcchhHHHHHhhhhccCCcccCCCCCCCCcchHHHHHHHhhhccccccCCCCCCcccCCcHHHHHHHHHHHH
Q 007474 233 -------SGISSLVQFNKSWQMTRNPKMASDTDRQPDVDLEDAIEASISRGKLVSAGKNKNVQTFVNPFWTEMLFLSKRS 305 (602)
Q Consensus 233 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~L~~R~ 305 (602)
....+..++.+.|.+++.++.+. ...+....+.+ ........++|..|+|.|++.+++|.
T Consensus 383 ~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~-----------~~l~~~~~~~k--~~~~al~s~~y~v~~~~qvk~c~~R~ 449 (1391)
T KOG0065|consen 383 WNKRSKPYPYTSVSEFAEYFLNSEDYAKLK-----------KELSKPYDKSK--KHKAALVSSKYSVPYWEQVKACTIRE 449 (1391)
T ss_pred ccccCCCcccCCHHHHHHHHhcchhhHHHH-----------HHhcchhhhhh--ccchhhcCCceeccHHHHHHHHHHHH
Confidence 11122367888888877665321 11111111111 11113345678889999999999999
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHhcCCC
Q 007474 306 NTNSRRMPELFGTRLGAQLVIACVLATLYWQLD-DSPKGTRLRLAFVAFAMTTIFYNCAREIPALLQERNIFIRETSYNA 384 (602)
Q Consensus 306 ~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~~~-~~~~~~~~~~g~~f~~~~~~~~~~~~~i~~~~~er~v~~rE~~~~~ 384 (602)
+..+.||..++..++++.+++|+++|++|++.+ ++..+.+.|.|++||++.+.++.++++++...+.||||+|||...+
T Consensus 450 f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~f 529 (1391)
T KOG0065|consen 450 FLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSF 529 (1391)
T ss_pred HHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccc
Confidence 999999999999999999999999999999999 8888899999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhHhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007474 385 YRVSSYVLAHALASIPSMITLSLVFALTTFWAVGLAGGFSGFLFFFITMFASYWAGTSFMAFVAGFIPNIQIGFTIVVAI 464 (602)
Q Consensus 385 Y~~~~y~~a~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~ 464 (602)
|++++|.++.++.++|+.++.+++|.+|+||++||.+++++||++++++++...++.++++++++++++...|+.++++.
T Consensus 530 Y~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~ 609 (1391)
T KOG0065|consen 530 YPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGIL 609 (1391)
T ss_pred cChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccCCCCcccchhhhhccChhHHHHHHHHhhhhCCCC-cccccCccccCCCCCCCCCChhhHHHHhhhccc
Q 007474 465 LGLSLLFCGFYISHDEIPSYWIWFHYVSLVKYPFQGALQNEYGDPN-RCFLTGLQFFDGTPFDGLPNSTKIELLQSMSNV 543 (602)
Q Consensus 465 ~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~~~l~~nef~~~~-~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (602)
++.+.+++||+||.++||+||+|++|+||+.|++|+++.|||+++. .|.+.| +.++++|. .++.|...++.
T Consensus 610 ~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~g------p~y~n~~~--~~~~c~~~~~~ 681 (1391)
T KOG0065|consen 610 LLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSG------PAYDNISI--ENKVCAATGAT 681 (1391)
T ss_pred HHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCC------Cccccccc--ccccchhhccc
Confidence 9999999999999999999999999999999999999999999999 996322 11233333 34578778888
Q ss_pred cccccCCcccccchHHHHh-hcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007474 544 LGRNITGSTCLTTGMKILE-QKGITDISKWKCIWILVAFGFLFRVLFYFTLLFGS 597 (602)
Q Consensus 544 ~g~~~~~~~C~~~G~~~L~-~~g~~~~~~w~~~~il~~~~~~f~~l~~~~L~~~~ 597 (602)
+|+++ +.|+++++ +|++.+.+.|+|+||++||.++|.++.-+++.+.+
T Consensus 682 ~G~~~------v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~ 730 (1391)
T KOG0065|consen 682 LGNDY------VSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLK 730 (1391)
T ss_pred cCceE------EecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence 88765 78899884 59999999999999999999999999999998876
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-47 Score=363.32 Aligned_cols=188 Identities=32% Similarity=0.544 Sum_probs=171.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc----ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES----RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~ 76 (602)
++|+|||||||||||+||.|+.+++ +|+|.++|+++.. ...|+.+|+|+|+.+|||++||.||+..+...- .
T Consensus 31 v~iiGpSGSGKSTlLRclN~LE~~~--~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~ 106 (240)
T COG1126 31 VVIIGPSGSGKSTLLRCLNGLEEPD--SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--K 106 (240)
T ss_pred EEEECCCCCCHHHHHHHHHCCcCCC--CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--c
Confidence 4799999999999999999998754 5999999987642 346778999999999999999999999875432 3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
+.++++.+++..++|+++||.+.+|.++. +|||||||||+|||||+.+|+++++|||||.|||+...++++.+++
T Consensus 107 ~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~ 181 (240)
T COG1126 107 KLSKAEAREKALELLEKVGLADKADAYPA-----QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKD 181 (240)
T ss_pred CCCHHHHHHHHHHHHHHcCchhhhhhCcc-----ccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHH
Confidence 57889999999999999999999988776 5999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 157 IAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 157 l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
|+++|.|.|++||+.. -+.+.+|||++|++|+++..|++++
T Consensus 182 LA~eGmTMivVTHEM~-FAr~VadrviFmd~G~iie~g~p~~ 222 (240)
T COG1126 182 LAEEGMTMIIVTHEMG-FAREVADRVIFMDQGKIIEEGPPEE 222 (240)
T ss_pred HHHcCCeEEEEechhH-HHHHhhheEEEeeCCEEEEecCHHH
Confidence 9999999999999997 5889999999999999999998766
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-44 Score=358.66 Aligned_cols=187 Identities=29% Similarity=0.473 Sum_probs=172.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc------ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES------RLLKIISAYVMQDELLFPMLTVEETLMFSAECRL 74 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~------~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~ 74 (602)
.+|+|.||||||||++++.++.+|+ +|+|.++|+++.. +..|+.+|+++|+.+|+...||.||+.|..++.
T Consensus 35 ~GIIG~SGAGKSTLiR~iN~Le~Pt--sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia- 111 (339)
T COG1135 35 FGIIGYSGAGKSTLLRLINLLERPT--SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA- 111 (339)
T ss_pred EEEEcCCCCcHHHHHHHHhccCCCC--CceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhc-
Confidence 4899999999999999999998864 5999999988753 346778999999999999999999999988765
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 007474 75 PRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVL 154 (602)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (602)
..++++.++||.++++.+||++.++.++. +|||||||||+|||||+++|+||++|||||.|||.+...|+++|
T Consensus 112 --g~~k~ei~~RV~elLelVgL~dk~~~yP~-----qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL 184 (339)
T COG1135 112 --GVPKAEIKQRVAELLELVGLSDKADRYPA-----QLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELL 184 (339)
T ss_pred --CCCHHHHHHHHHHHHHHcCChhhhccCch-----hcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHH
Confidence 47899999999999999999998887765 59999999999999999999999999999999999999999999
Q ss_pred HHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 155 GEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 155 ~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+++.++ |.||+++||+++ -+-++||||.+|++|++++.|+..+
T Consensus 185 ~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~G~lvE~G~v~~ 228 (339)
T COG1135 185 KDINRELGLTIVLITHEME-VVKRICDRVAVLDQGRLVEEGTVSE 228 (339)
T ss_pred HHHHHHcCCEEEEEechHH-HHHHHhhhheEeeCCEEEEeccHHH
Confidence 999874 999999999997 5899999999999999999998766
No 12
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.7e-44 Score=370.08 Aligned_cols=192 Identities=36% Similarity=0.577 Sum_probs=172.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc--ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES--RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
+|++||||||||||+|+|+|+.+| .+|+|.++|.+..+ ...++.+||++|++.+++.+||+|||.|.+.++.+.
T Consensus 34 ~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~-- 109 (293)
T COG1131 34 FGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS-- 109 (293)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC--
Confidence 489999999999999999999986 46999999998765 456778999999999999999999999999987532
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
....+++++++++.+||.+.++++++ +||+|||||++||+||+++|+++||||||+||||.++.++.+.|++++
T Consensus 110 -~~~~~~~~~~~l~~~~L~~~~~~~~~-----~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~ 183 (293)
T COG1131 110 -KEEAEERIEELLELFGLEDKANKKVR-----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELA 183 (293)
T ss_pred -hhHHHHHHHHHHHHcCCchhhCcchh-----hcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHH
Confidence 25567899999999999986666555 599999999999999999999999999999999999999999999999
Q ss_pred hcC-cEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccchHHHHH
Q 007474 159 KSG-SVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPATDFSLFF 204 (602)
Q Consensus 159 ~~g-~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~~f 204 (602)
++| +||++|||+++ ++..+||+|++|++|++++.|++++ +...+
T Consensus 184 ~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~-l~~~~ 228 (293)
T COG1131 184 KEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEE-LKEKF 228 (293)
T ss_pred hCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHH-HHHhh
Confidence 987 79999999997 6999999999999999999997766 54443
No 13
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.7e-43 Score=345.46 Aligned_cols=178 Identities=35% Similarity=0.534 Sum_probs=156.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc-------cccceEEEEccCCcCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR-------LLKIISAYVMQDELLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~-------~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~ 73 (602)
++|+|||||||||||++|+|+.+| ++|+|.++|++++.. ..++.+|||+|+.+|+|++||.||+.+.+.+.
T Consensus 34 vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~ 111 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA 111 (226)
T ss_pred EEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHc
Confidence 589999999999999999999886 469999999887531 23456999999999999999999999876554
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccc-cccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 007474 74 LPRSVSKKRKRERVEALIDQLGLRSAAK-TFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK 152 (602)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~-~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (602)
..+..+.+++++++++.+||.+..+ +++. +|||||||||+|||||+++|++++.||||.+||+.++..|++
T Consensus 112 ---~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~-----eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ 183 (226)
T COG1136 112 ---GKSAGRRKRAAEELLEVLGLEDRLLKKKPS-----ELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLE 183 (226)
T ss_pred ---CCChhHHHHHHHHHHHhcCChhhhccCCch-----hcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHH
Confidence 2333367788999999999997666 5554 599999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCce
Q 007474 153 VLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQT 190 (602)
Q Consensus 153 ~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 190 (602)
++++++++ |+|||++||||. +...|||++.|.+|++
T Consensus 184 ll~~~~~~~g~tii~VTHd~~--lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 184 LLRELNKERGKTIIMVTHDPE--LAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHhcCCEEEEEcCCHH--HHHhCCEEEEEeCCee
Confidence 99999875 999999999984 8899999999999983
No 14
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-43 Score=341.15 Aligned_cols=187 Identities=28% Similarity=0.493 Sum_probs=171.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++++|||||||||+||+|.+++.|+ +|+|++||+++.. ...|+.+|||-|...|||++||.||+.+...+. +
T Consensus 30 ~vliGpSGsGKTTtLkMINrLiept--~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~ 104 (309)
T COG1125 30 LVLIGPSGSGKTTTLKMINRLIEPT--SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---G 104 (309)
T ss_pred EEEECCCCCcHHHHHHHHhcccCCC--CceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---C
Confidence 3689999999999999999999864 5999999999864 457888999999999999999999999887765 5
Q ss_pred CCHHHHHHHHHHHHHHcCCCc--ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRS--AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLG 155 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (602)
.++++.++|++++|+.+||+. .+++ ++++|||||+|||.+||||+.+|++|++|||++.|||.++.++.+.++
T Consensus 105 w~k~~i~~r~~ELl~lvgL~p~~~~~R-----yP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~ 179 (309)
T COG1125 105 WDKERIKKRADELLDLVGLDPSEYADR-----YPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIK 179 (309)
T ss_pred CCHHHHHHHHHHHHHHhCCCHHHHhhc-----CchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHH
Confidence 678899999999999999974 4554 455799999999999999999999999999999999999999999999
Q ss_pred HHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 156 EIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 156 ~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++.++ |+|||++|||.. |.+.++||+++|++|+++..++|++
T Consensus 180 ~lq~~l~kTivfVTHDid-EA~kLadri~vm~~G~i~Q~~~P~~ 222 (309)
T COG1125 180 ELQKELGKTIVFVTHDID-EALKLADRIAVMDAGEIVQYDTPDE 222 (309)
T ss_pred HHHHHhCCEEEEEecCHH-HHHhhhceEEEecCCeEEEeCCHHH
Confidence 99875 999999999987 7999999999999999999999987
No 15
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-43 Score=363.80 Aligned_cols=187 Identities=29% Similarity=0.473 Sum_probs=173.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc-ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES-RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~-~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
++|+||||||||||||+|||+.++ ++|+|.++|++++. ...+|.+++|+|+..|||+|||+||+.|+.+.+ ..+
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~~--~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~ 106 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEEP--TSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVP 106 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCc
Confidence 479999999999999999999885 45999999999976 334577999999999999999999999998876 567
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007474 80 KKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK 159 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~ 159 (602)
+++.+++|+++.+.|+|++..|+++. +|||||||||+|||||+++|+++++|||.|+||...+.++...|+++.+
T Consensus 107 k~ei~~rV~eva~~L~l~~lL~r~P~-----~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~ 181 (338)
T COG3839 107 KAEIDKRVKEVAKLLGLEHLLNRKPL-----QLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHE 181 (338)
T ss_pred hHHHHHHHHHHHHHcCChhHHhcCcc-----cCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHH
Confidence 88999999999999999999988865 5999999999999999999999999999999999999999999999987
Q ss_pred c-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 160 S-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+ |.|+|.+|||.. |+..++||+.+|++|++...|++.+
T Consensus 182 ~l~~T~IYVTHDq~-EAmtladri~Vm~~G~i~Q~g~p~e 220 (338)
T COG3839 182 RLGTTTIYVTHDQV-EAMTLADRIVVMNDGRIQQVGTPLE 220 (338)
T ss_pred hcCCcEEEEcCCHH-HHHhhCCEEEEEeCCeeeecCChHH
Confidence 5 899999999986 7999999999999999999999987
No 16
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-43 Score=331.01 Aligned_cols=187 Identities=30% Similarity=0.489 Sum_probs=175.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc--ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES--RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
++|+|||||||||+|++|++++.|+ +|+|+++|.+..+ ...++.+|.++.+..++..||++|||.|.+++. ++
T Consensus 31 ~GlLG~NGAGKTT~LRmiatlL~P~--~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l 105 (245)
T COG4555 31 TGLLGENGAGKTTLLRMIATLLIPD--SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN---GL 105 (245)
T ss_pred EEEEcCCCCCchhHHHHHHHhccCC--CceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hh
Confidence 5899999999999999999999865 5999999998743 457888999998889999999999999999876 57
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
++.+.+++++++.+.|+|.+++|+++|+ +|-|+||||+|||||+++|++++|||||||||..+++.+.+.++++.
T Consensus 106 ~~~~~kari~~l~k~l~l~~~~~rRv~~-----~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k 180 (245)
T COG4555 106 SRKEIKARIAELSKRLQLLEYLDRRVGE-----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK 180 (245)
T ss_pred hhhHHHHHHHHHHHHhChHHHHHHHHhh-----hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh
Confidence 7888999999999999999999999986 99999999999999999999999999999999999999999999999
Q ss_pred hcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 159 KSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++|++||+++|.+. |+..+||++++|++|++|+.|++++
T Consensus 181 ~egr~viFSSH~m~-EvealCDrvivlh~Gevv~~gs~~~ 219 (245)
T COG4555 181 NEGRAVIFSSHIMQ-EVEALCDRVIVLHKGEVVLEGSIEA 219 (245)
T ss_pred cCCcEEEEecccHH-HHHHhhheEEEEecCcEEEcCCHHH
Confidence 99999999999997 7999999999999999999999876
No 17
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-43 Score=342.38 Aligned_cols=175 Identities=33% Similarity=0.487 Sum_probs=158.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+||||||||||||+|+|+.+|+ +|+|.++|+++. .....++||+|++.++|.+||.||+.++...+ ..++
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~p~--~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~---~~~~ 104 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEKPT--SGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVLDNVALGLELR---GKSK 104 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCcccC--CCCCCEEEEeccCcccchhhHHhhheehhhcc---ccch
Confidence 5899999999999999999999864 599999999883 23455799999999999999999999988765 2567
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK- 159 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~- 159 (602)
++.+++++++|+.+||.+..|.++. +|||||||||+|||||+.+|++|+||||++.||+.++.++.+.|.++.+
T Consensus 105 ~e~~~~a~~~L~~VgL~~~~~~~P~-----qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~ 179 (248)
T COG1116 105 AEARERAKELLELVGLAGFEDKYPH-----QLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE 179 (248)
T ss_pred HhHHHHHHHHHHHcCCcchhhcCcc-----ccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHh
Confidence 7788899999999999998887765 5999999999999999999999999999999999999999999999876
Q ss_pred cCcEEEEEEcCCcHHHHHHhhHHhhhcCC
Q 007474 160 SGSVVIMSIHQPSYRIFSLLNRLIFLSHG 188 (602)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 188 (602)
.++||+++|||.+ |...++|||++|+++
T Consensus 180 ~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 180 TRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred hCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 5899999999997 799999999999984
No 18
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.1e-43 Score=337.63 Aligned_cols=188 Identities=35% Similarity=0.557 Sum_probs=169.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc------ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES------RLLKIISAYVMQDELLFPMLTVEETLMFSAECRL 74 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~------~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~ 74 (602)
++||||||+|||||||.|.|+++|. +|+|.++|+++.. ...++++|+++|+..||..|||.||+.|..+-.
T Consensus 37 ~~iiGgSGsGKStlLr~I~Gll~P~--~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~- 113 (263)
T COG1127 37 LAILGGSGSGKSTLLRLILGLLRPD--KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH- 113 (263)
T ss_pred EEEECCCCcCHHHHHHHHhccCCCC--CCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhh-
Confidence 4899999999999999999999965 5999999998743 245677999999999999999999999865433
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 007474 75 PRSVSKKRKRERVEALIDQLGLRSA-AKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKV 153 (602)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (602)
..++++..++.+..-|+.+||... ++... .+||||||||+++|||++.||+++|+||||+||||.++..+.++
T Consensus 114 -~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----sELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~L 187 (263)
T COG1127 114 -TKLPESLIRELVLMKLELVGLRGAAADLYP-----SELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDEL 187 (263)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----hhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHH
Confidence 357888899999999999999876 55544 46999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 154 LGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 154 l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++.++ |.|++++|||.. +++.+|||+++|.+|+++..|++++
T Consensus 188 I~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~gkv~~~Gt~~e 232 (263)
T COG1127 188 IRELNDALGLTVIMVTHDLD-SLLTIADRVAVLADGKVIAEGTPEE 232 (263)
T ss_pred HHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeCCEEEEeCCHHH
Confidence 9999875 999999999997 6999999999999999999999887
No 19
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.2e-43 Score=344.92 Aligned_cols=188 Identities=28% Similarity=0.545 Sum_probs=163.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCC---cCCCCCCHHHHHHHHHHhcCC-C
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDE---LLFPMLTVEETLMFSAECRLP-R 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~---~l~~~lTV~e~l~f~~~~~~~-~ 76 (602)
++|+||||||||||+|+|.|+++|. +|+|.++|++......+.++|||||.. .-|| +||+|.+..+...+.. .
T Consensus 33 ~~iiGPNGaGKSTLlK~iLGll~p~--~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 33 TALIGPNGAGKSTLLKAILGLLKPS--SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCC--cceEEEccccccccccCCeEEEcCcccccCCCCC-cCHHHHHHccCccccccc
Confidence 5899999999999999999998864 599999999876554457799999953 3455 6999999886433321 0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
....++++++++++|+++|+.+.+|+.+|+ |||||+|||-|||||+.+|++|+|||||+|+|+.++..++++|++
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~-----LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~ 184 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKE 184 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccc-----cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 112344578999999999999999999997 999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 157 IAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 157 l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++|+||++++||+. .+.++||+|+.|+ +++++.|++++
T Consensus 185 l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln-~~~~~~G~~~~ 224 (254)
T COG1121 185 LRQEGKTVLMVTHDLG-LVMAYFDRVICLN-RHLIASGPPEE 224 (254)
T ss_pred HHHCCCEEEEEeCCcH-HhHhhCCEEEEEc-CeeEeccChhh
Confidence 9999999999999998 6999999999995 56888999877
No 20
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4e-43 Score=349.27 Aligned_cols=190 Identities=35% Similarity=0.496 Sum_probs=168.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCC-
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPR- 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~- 76 (602)
++|+||||||||||||+|+|+++|. +|+|.++|+++.. +...+.++||||.....+.+||+|.+.++..-....
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~l~p~--~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~ 108 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGLLKPK--SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLF 108 (258)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCC--CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccc
Confidence 5899999999999999999999864 5999999998854 456778999999998888999999998864322111
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
....+++++.++++|+.+|+.+.+++.+.+ |||||||||.||+||+.+|++|+||||||.||...+.++++++++
T Consensus 109 ~~~~~~D~~~v~~aL~~~~~~~la~r~~~~-----LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~ 183 (258)
T COG1120 109 GRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRD 183 (258)
T ss_pred cCCCHhHHHHHHHHHHHhCcHHHhcCcccc-----cChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHH
Confidence 122445566899999999999999998875 999999999999999999999999999999999999999999999
Q ss_pred HHh-cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 157 IAK-SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 157 l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+++ +|.|||+++||++ ....+||++++|++|+++..|+|.+
T Consensus 184 l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~e 225 (258)
T COG1120 184 LNREKGLTVVMVLHDLN-LAARYADHLILLKDGKIVAQGTPEE 225 (258)
T ss_pred HHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEeecCcch
Confidence 995 5999999999998 5999999999999999999999887
No 21
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.8e-43 Score=346.92 Aligned_cols=189 Identities=30% Similarity=0.518 Sum_probs=170.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCE---eccc-ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGA---VLES-RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~---~~~~-~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~ 76 (602)
+|++|||||||||||++|||+..|+ .|.|.+||+ +.+. ....+.+|||+|+-.+|++|||.||+.|+.+.+ ..
T Consensus 31 vaLlGpSGaGKsTlLRiIAGLe~p~--~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~ 107 (345)
T COG1118 31 VALLGPSGAGKSTLLRIIAGLETPD--AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KE 107 (345)
T ss_pred EEEECCCCCcHHHHHHHHhCcCCCC--CceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhccccc-cc
Confidence 5899999999999999999999865 599999999 5443 234567999999999999999999999999876 22
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
..++.+.+.+++++|+.+.|++.++.++ .+|||||||||++||||+..|++|+||||+++||..-+.++.+.|++
T Consensus 108 ~p~~~~~r~rv~elL~lvqL~~la~ryP-----~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~ 182 (345)
T COG1118 108 RPSEAEIRARVEELLRLVQLEGLADRYP-----AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRK 182 (345)
T ss_pred CCChhhHHHHHHHHHHHhcccchhhcCc-----hhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHH
Confidence 3456788899999999999999887665 46999999999999999999999999999999999999999999999
Q ss_pred HHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 157 IAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 157 l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+.++ |.|++++|||++ |+++++|||++|++|+|...|++++
T Consensus 183 ~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~p~e 224 (345)
T COG1118 183 LHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPDE 224 (345)
T ss_pred HHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeCCHHH
Confidence 9876 999999999997 7999999999999999999999887
No 22
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=8.9e-43 Score=321.49 Aligned_cols=187 Identities=30% Similarity=0.506 Sum_probs=168.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc-cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR-LLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
+||+||||||||||||.|+|...|. +|+|.+||++.+.. ...+-++.++|+.++|.+|||.+|+.++.. |.-.-
T Consensus 28 vAi~GpSGaGKSTLLnLIAGF~~P~--~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~---P~LkL 102 (231)
T COG3840 28 VAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLS---PGLKL 102 (231)
T ss_pred EEEECCCCccHHHHHHHHHhccCCC--CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCC---ccccc
Confidence 5899999999999999999998864 59999999998643 345568999999999999999999988654 22223
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007474 80 KKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK 159 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~ 159 (602)
..+.+++++.++.++||..+.+++.+. |||||||||++||+|+++-+||+||||+|.|||.-+.++..++.++++
T Consensus 103 ~a~~r~~v~~aa~~vGl~~~~~RLP~~-----LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~ 177 (231)
T COG3840 103 NAEQREKVEAAAAQVGLAGFLKRLPGE-----LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCD 177 (231)
T ss_pred CHHHHHHHHHHHHHhChhhHhhhCccc-----cCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHH
Confidence 467788999999999999999988875 999999999999999999999999999999999999999999999986
Q ss_pred -cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 160 -SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 160 -~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++.|++++||+|+ ++..++|+++++++|||.+.|+..+
T Consensus 178 E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~ 216 (231)
T COG3840 178 ERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQE 216 (231)
T ss_pred hhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHH
Confidence 5899999999998 6999999999999999999998765
No 23
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=8.9e-43 Score=361.23 Aligned_cols=204 Identities=28% Similarity=0.470 Sum_probs=179.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc-cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR-LLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
++|+|||||||||||++|||+..|+ +|+|.++|++++.- ..+|.+|+|+|+-.|||+|||+||+.|+.+.+ +..+
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~p~--~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~ 109 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQPS--SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLK 109 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCC
Confidence 4799999999999999999998864 59999999999763 45677999999999999999999999998743 3445
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007474 80 KKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK 159 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~ 159 (602)
+++.+++|+++++.++|++.+++++. +|||||||||++||||+.+|++|+||||.|+||..-+.++..-|+++.+
T Consensus 110 ~~~i~~rv~e~L~lV~L~~~~~R~p~-----qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~ 184 (352)
T COG3842 110 KAEIKARVEEALELVGLEGFADRKPH-----QLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQR 184 (352)
T ss_pred HHHHHHHHHHHHHHcCchhhhhhChh-----hhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHH
Confidence 67788999999999999998887765 5999999999999999999999999999999999999999999999986
Q ss_pred -cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccchHHHHHHHcCCCCCCCCCchhHHHh
Q 007474 160 -SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPATDFSLFFAEFGHPIPENENPCEFSLD 223 (602)
Q Consensus 160 -~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~n~ad~~~~ 223 (602)
.|.|.|++|||.+ |.+.++|||.+|++|++...|+|++ +- ..|.+.-.|||+-+
T Consensus 185 ~~giT~i~VTHDqe-EAl~msDrI~Vm~~G~I~Q~gtP~e-iY--------~~P~~~fVA~FiG~ 239 (352)
T COG3842 185 ELGITFVYVTHDQE-EALAMSDRIAVMNDGRIEQVGTPEE-IY--------ERPATRFVADFIGE 239 (352)
T ss_pred hcCCeEEEEECCHH-HHhhhccceEEccCCceeecCCHHH-Hh--------hCcchHHHHHHhCc
Confidence 4999999999987 7999999999999999999999987 31 23555555666543
No 24
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.9e-42 Score=328.59 Aligned_cols=190 Identities=29% Similarity=0.494 Sum_probs=168.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc------ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES------RLLKIISAYVMQDELLFPMLTVEETLMFSAECRL 74 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~------~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~ 74 (602)
+||+|||||||||||++|+|+.++ ++|+|.+||.++.. +.+|+.+||++|+.++.+.+||.||+..+..-+.
T Consensus 33 VaiIG~SGaGKSTLLR~lngl~d~--t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~ 110 (258)
T COG3638 33 VAIIGPSGAGKSTLLRSLNGLVDP--TSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYT 110 (258)
T ss_pred EEEECCCCCcHHHHHHHHhcccCC--CcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccc
Confidence 589999999999999999998875 45999999987753 2457789999999999999999999987654332
Q ss_pred CC-----CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 007474 75 PR-----SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFK 149 (602)
Q Consensus 75 ~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 149 (602)
+. ++..++.+.++-+.|+++|+.+.+.++.+. |||||+|||+|||+|+.+|++++.|||+++|||.++++
T Consensus 111 s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~-----LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~ 185 (258)
T COG3638 111 STWRSLFGLFSKEDKAQALDALERVGILDKAYQRAST-----LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKK 185 (258)
T ss_pred hHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhcc-----CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHH
Confidence 21 233456677888999999999999988875 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 150 VVKVLGEIAK-SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 150 i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+|+.|+++++ +|.|||++.||.+ -+.++|||++-|++|+++|+|++.+
T Consensus 186 Vm~~l~~in~~~g~Tvi~nLH~vd-lA~~Y~~Riigl~~G~ivfDg~~~e 234 (258)
T COG3638 186 VMDILKDINQEDGITVIVNLHQVD-LAKKYADRIIGLKAGRIVFDGPASE 234 (258)
T ss_pred HHHHHHHHHHHcCCEEEEEechHH-HHHHHHhhheEecCCcEEEeCChhh
Confidence 9999999986 6999999999997 4889999999999999999999987
No 25
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=4e-41 Score=350.27 Aligned_cols=187 Identities=29% Similarity=0.470 Sum_probs=168.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc--ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES--RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
++|+||||||||||+++|+|+++|+ +|+|.++|.++.. ...++.+||++|++.+++.+||+||+.|.+..+ ..
T Consensus 36 ~gllGpNGaGKSTLl~~l~Gl~~p~--~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~ 110 (306)
T PRK13537 36 FGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GL 110 (306)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CC
Confidence 4899999999999999999998854 5999999998753 234667999999999999999999999876643 23
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
+..+.+++++++++.++|.+.+++.++. ||||||||++||+||+++|++|+|||||+|||+.++..+.+.|++++
T Consensus 111 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~ 185 (306)
T PRK13537 111 SAAAARALVPPLLEFAKLENKADAKVGE-----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLL 185 (306)
T ss_pred CHHHHHHHHHHHHHHcCCchHhcCchhh-----CCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 4555667889999999999888888764 99999999999999999999999999999999999999999999998
Q ss_pred hcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 159 KSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++|+|||++||+++ ++.++||++++|++|++++.|++++
T Consensus 186 ~~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~~ 224 (306)
T PRK13537 186 ARGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPHA 224 (306)
T ss_pred hCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 88999999999997 7999999999999999999998876
No 26
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=4.2e-41 Score=312.84 Aligned_cols=183 Identities=31% Similarity=0.514 Sum_probs=165.4
Q ss_pred EEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc------ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCC
Q 007474 2 AILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES------RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLP 75 (602)
Q Consensus 2 ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~------~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~ 75 (602)
-|+||||||||||||+|.+..+|+ +|+|.+||.+++. ...|+++|+|+||..++++.||.||+.|+.+..
T Consensus 32 fl~GpSGAGKSTllkLi~~~e~pt--~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~-- 107 (223)
T COG2884 32 FLTGPSGAGKSTLLKLIYGEERPT--RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI-- 107 (223)
T ss_pred EEECCCCCCHHHHHHHHHhhhcCC--CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc--
Confidence 489999999999999999998864 5999999999864 236788999999999999999999999987764
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 007474 76 RSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLG 155 (602)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (602)
+.++++.+++|.++|+.+||.+.++..+. +|||||||||+||||++++|++|+.||||.+|||..+.+|++++.
T Consensus 108 -G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfe 181 (223)
T COG2884 108 -GKPPREIRRRVSEVLDLVGLKHKARALPS-----QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFE 181 (223)
T ss_pred -CCCHHHHHHHHHHHHHHhccchhhhcCcc-----ccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHH
Confidence 56788999999999999999998887664 599999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCC
Q 007474 156 EIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGT 195 (602)
Q Consensus 156 ~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 195 (602)
++.+.|.||+++||+.. -+-.+--|++.|++|+++....
T Consensus 182 einr~GtTVl~ATHd~~-lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 182 EINRLGTTVLMATHDLE-LVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHhhcCcEEEEEeccHH-HHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999965 4666777999999999987654
No 27
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-41 Score=355.68 Aligned_cols=187 Identities=26% Similarity=0.444 Sum_probs=168.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc-cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR-LLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
++|+|||||||||||++|+|+.++ .+|+|.++|+++... ..++.+|||+|+..++|++||+||+.|..+.+ ..+
T Consensus 33 ~~llG~sGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~ 107 (356)
T PRK11650 33 IVLVGPSGCGKSTLLRMVAGLERI--TSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMP 107 (356)
T ss_pred EEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCC
Confidence 489999999999999999999885 469999999988542 23467999999999999999999999986543 345
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007474 80 KKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK 159 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~ 159 (602)
+.+.+++++++++.+||.+..++++. .|||||||||+|||||+.+|++|+|||||++||+.++..+.+.|+++.+
T Consensus 108 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~ 182 (356)
T PRK11650 108 KAEIEERVAEAARILELEPLLDRKPR-----ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHR 182 (356)
T ss_pred HHHHHHHHHHHHHHcCChhHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 66677899999999999998887775 4999999999999999999999999999999999999999999999987
Q ss_pred c-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 160 S-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+ |.|+|++||++. ++.+++|++++|++|+++..|++++
T Consensus 183 ~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g~~~~ 221 (356)
T PRK11650 183 RLKTTSLYVTHDQV-EAMTLADRVVVMNGGVAEQIGTPVE 221 (356)
T ss_pred hcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEECCHHH
Confidence 5 999999999986 6999999999999999999998876
No 28
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=9.9e-41 Score=350.87 Aligned_cols=187 Identities=26% Similarity=0.414 Sum_probs=167.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc------cccceEEEEccCCcCCCCCCHHHHHHHHHHhcC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR------LLKIISAYVMQDELLFPMLTVEETLMFSAECRL 74 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~------~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~ 74 (602)
++|+||||||||||+++|+|+.+|. +|+|.++|+++... ..++.++|++|+..+++.+||+||+.+.....
T Consensus 34 ~gIiG~sGaGKSTLlr~I~gl~~p~--~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~- 110 (343)
T TIGR02314 34 YGVIGASGAGKSTLIRCVNLLERPT--SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD- 110 (343)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc-
Confidence 4899999999999999999998864 59999999987531 23567999999999999999999999876532
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 007474 75 PRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVL 154 (602)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (602)
..++++.++++.++++.+||.+..|.+++ .|||||||||+|||||+++|++|+|||||++||+.++..+++.|
T Consensus 111 --~~~~~~~~~~v~e~l~~vgL~~~~~~~~~-----~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL 183 (343)
T TIGR02314 111 --NTPKDEIKRKVTELLALVGLGDKHDSYPS-----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELL 183 (343)
T ss_pred --CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 24566777899999999999998887765 49999999999999999999999999999999999999999999
Q ss_pred HHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 155 GEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 155 ~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++++ |.|||++||+++ .+.++||++++|++|+++..|++.+
T Consensus 184 ~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~G~iv~~g~~~~ 227 (343)
T TIGR02314 184 KEINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQGTVSE 227 (343)
T ss_pred HHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999875 999999999987 5889999999999999999998765
No 29
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=9.6e-41 Score=353.09 Aligned_cols=187 Identities=30% Similarity=0.524 Sum_probs=168.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc-ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES-RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~-~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
++|+|||||||||||++|+|+.++. +|+|.++|+++.. ...++.++||+|+..+||++||+||+.|..+.+ ..+
T Consensus 33 ~~l~GpsGsGKSTLLr~iaGl~~p~--~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~ 107 (353)
T TIGR03265 33 VCLLGPSGCGKTTLLRIIAGLERQT--AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMG 107 (353)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCC--ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCC
Confidence 4899999999999999999998854 5999999998753 223567999999999999999999999986543 345
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007474 80 KKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK 159 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~ 159 (602)
+.+.+++++++++.+||++..|+.+. .|||||||||+|||||+.+|++|+|||||++||+.++.++.+.|+++.+
T Consensus 108 ~~~~~~~~~~~l~~l~L~~~~~~~~~-----~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 182 (353)
T TIGR03265 108 RAEVAERVAELLDLVGLPGSERKYPG-----QLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR 182 (353)
T ss_pred HHHHHHHHHHHHHHcCCCchhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 66778899999999999998887765 5999999999999999999999999999999999999999999999987
Q ss_pred c-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 160 S-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+ |.|+|++||+++ ++..++|++++|++|+++..|++++
T Consensus 183 ~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~~ 221 (353)
T TIGR03265 183 RLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQE 221 (353)
T ss_pred hcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 5 899999999987 7999999999999999999998876
No 30
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1e-40 Score=347.02 Aligned_cols=187 Identities=30% Similarity=0.469 Sum_probs=166.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc--ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES--RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
++|+||||||||||+|+|+|+++|. +|+|.++|+++.. ...++.+||++|++.+++.+||+||+.+.+.++ ..
T Consensus 22 ~~l~G~NGaGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~ 96 (302)
T TIGR01188 22 FGFLGPNGAGKTTTIRMLTTLLRPT--SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLY---GL 96 (302)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHc---CC
Confidence 4899999999999999999998854 5999999998743 234566899999999999999999999876543 23
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
+..+.+++++++++.+||.+..++.+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 97 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 171 (302)
T TIGR01188 97 PKDEAEERAEELLELFELGEAADRPVGT-----YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK 171 (302)
T ss_pred CHHHHHHHHHHHHHHcCChhHhCCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 4455667899999999999888887764 99999999999999999999999999999999999999999999998
Q ss_pred hcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 159 KSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++|+|||+++|+++ ++.++||++++|++|++++.|++++
T Consensus 172 ~~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 210 (302)
T TIGR01188 172 EEGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEE 210 (302)
T ss_pred hCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 88999999999987 6889999999999999999998766
No 31
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.7e-41 Score=316.13 Aligned_cols=205 Identities=24% Similarity=0.417 Sum_probs=173.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCC---CCceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEK---ESLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~---~~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
+|+||||||||||||+++...... ..++|+|.++|+++.. ...|+.+|.|+|.++-|| +|++||+.|+.++
T Consensus 36 TAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~ 114 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRL 114 (253)
T ss_pred EEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHh
Confidence 589999999999999999987652 3478999999998853 357888999999999999 8999999999876
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK 152 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (602)
. +..+++.+++|++.|+...|.+--..+.. ....+||||||||++|||+|+.+|+||+||||||+|||.+..+|-+
T Consensus 115 ~---g~~~~~ldeiVe~sLk~AaLWdEVKDrL~-~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEe 190 (253)
T COG1117 115 H---GIKDKELDEIVESSLKKAALWDEVKDRLH-KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEE 190 (253)
T ss_pred h---ccchHHHHHHHHHHHHHhHhHHHhHHHhh-CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHH
Confidence 5 23337788999999999988654332332 2345799999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccchHHHHHHHcCCCCCCCCCchhHH
Q 007474 153 VLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPATDFSLFFAEFGHPIPENENPCEFS 221 (602)
Q Consensus 153 ~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~n~ad~~ 221 (602)
++.+|+ +.-|||++||.+. ...+..|+..++..|++|++|+.++ .| ..|.+....||+
T Consensus 191 Li~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~G~LvE~g~T~~----iF-----~~P~~~~TedYi 248 (253)
T COG1117 191 LITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYLGELVEFGPTDK----IF-----TNPKHKRTEDYI 248 (253)
T ss_pred HHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcccEEEEEcCHHh----hh-----cCccHHHHHHHh
Confidence 999998 4689999999997 6999999999999999999998776 33 346666666665
No 32
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-40 Score=351.61 Aligned_cols=187 Identities=24% Similarity=0.483 Sum_probs=168.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc-cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR-LLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
++|+|||||||||||++|+|+.++. +|+|.++|+++... ..++.++||+|+..++|++||+||+.|..+.+ ..+
T Consensus 35 ~~llGpsGsGKSTLLr~IaGl~~p~--~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~ 109 (351)
T PRK11432 35 VTLLGPSGCGKTTVLRLVAGLEKPT--EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVP 109 (351)
T ss_pred EEEECCCCCcHHHHHHHHHCCCCCC--ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCC
Confidence 4899999999999999999998854 59999999988542 23467999999999999999999999987643 345
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007474 80 KKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK 159 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~ 159 (602)
+.+.+++++++++.+||.+..++++. .|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+
T Consensus 110 ~~~~~~~v~~~l~~~gl~~~~~r~~~-----~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 184 (351)
T PRK11432 110 KEERKQRVKEALELVDLAGFEDRYVD-----QISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQ 184 (351)
T ss_pred HHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 67778899999999999988877765 5999999999999999999999999999999999999999999999987
Q ss_pred c-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 160 S-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+ |+|+|++||+++ ++.+++|++++|++|+++..|++++
T Consensus 185 ~~g~tii~vTHd~~-e~~~laD~i~vm~~G~i~~~g~~~~ 223 (351)
T PRK11432 185 QFNITSLYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQE 223 (351)
T ss_pred hcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 5 899999999987 7999999999999999999998876
No 33
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.5e-40 Score=352.26 Aligned_cols=189 Identities=28% Similarity=0.456 Sum_probs=168.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc-cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR-LLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
++|+|||||||||||++|+|+.++...+|+|.++|+++... ..++.++||+|+..++|++||+||+.|..+.+ ..+
T Consensus 34 ~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~ 110 (362)
T TIGR03258 34 LALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMP 110 (362)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCC
Confidence 48999999999999999999987532229999999987532 23567899999999999999999999987543 345
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007474 80 KKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK 159 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~ 159 (602)
+.+.+++++++++.+||++..+++++ .|||||||||+|||||+.+|++|+|||||+|||+..+.++.+.|+++++
T Consensus 111 ~~~~~~~v~~~l~~~gL~~~~~~~~~-----~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~ 185 (362)
T TIGR03258 111 KADIAERVADALKLVGLGDAAAHLPA-----QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHE 185 (362)
T ss_pred HHHHHHHHHHHHHhcCCCchhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHH
Confidence 66777899999999999998888776 4999999999999999999999999999999999999999999999987
Q ss_pred c--CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 160 S--GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 160 ~--g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+ |.|+|++||+++ ++..++|++++|++|+++..|++++
T Consensus 186 ~~~g~til~vTHd~~-ea~~l~dri~vl~~G~i~~~g~~~~ 225 (362)
T TIGR03258 186 ELPELTILCVTHDQD-DALTLADKAGIMKDGRLAAHGEPQA 225 (362)
T ss_pred hCCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 6 799999999987 6999999999999999999998876
No 34
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.7e-41 Score=332.41 Aligned_cols=187 Identities=27% Similarity=0.456 Sum_probs=168.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecc----cccccceEEEEccCC-cCCCCCCHHHHHHHHHHhcCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLE----SRLLKIISAYVMQDE-LLFPMLTVEETLMFSAECRLP 75 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~----~~~~~~~~~yv~Q~~-~l~~~lTV~e~l~f~~~~~~~ 75 (602)
++|+|+||||||||+++|+|+++|. +|+|.++|.++. ....++.+|||+|++ ..+-.-||.|.+.|+....
T Consensus 33 ~~i~G~nGsGKSTL~~~l~GLl~p~--~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~-- 108 (235)
T COG1122 33 VLLIGPNGSGKSTLLKLLNGLLKPT--SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL-- 108 (235)
T ss_pred EEEECCCCCCHHHHHHHHcCcCcCC--CCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc--
Confidence 4799999999999999999999865 499999999875 345788899999996 4455669999999987643
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 007474 76 RSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLG 155 (602)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (602)
..++++.++|++++++.+|+.+.+++.+. .|||||||||+||.+|+.+|++|+|||||+|||+..+.++++.++
T Consensus 109 -g~~~~e~~~rv~~~l~~vgl~~~~~r~p~-----~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~ 182 (235)
T COG1122 109 -GLPREEIEERVAEALELVGLEELLDRPPF-----NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLK 182 (235)
T ss_pred -CCCHHHHHHHHHHHHHHcCchhhccCCcc-----ccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 56777899999999999999998877665 599999999999999999999999999999999999999999999
Q ss_pred HHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 156 EIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 156 ~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+|.++ |+|||++||+.. .+.+++||+++|++|+++++|++.+
T Consensus 183 ~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~G~i~~~g~p~~ 225 (235)
T COG1122 183 KLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDGKILADGDPAE 225 (235)
T ss_pred HHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEECCEEeecCCHHH
Confidence 99987 689999999997 6999999999999999999998766
No 35
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-40 Score=332.57 Aligned_cols=188 Identities=32% Similarity=0.521 Sum_probs=163.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc------ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES------RLLKIISAYVMQDELLFPMLTVEETLMFSAECRL 74 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~------~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~ 74 (602)
++|+||||||||||+|+|+|+++|. +|+|.++|+++.. ...++.++||+|++.+++.+||+||+.+......
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 106 (235)
T cd03261 29 LAIIGPSGSGKSTLLRLIVGLLRPD--SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT 106 (235)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc
Confidence 4899999999999999999998854 5999999998743 1245678999999999999999999988654221
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 007474 75 PRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVL 154 (602)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (602)
..++++.+++++++++.+||.+..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|
T Consensus 107 --~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l 179 (235)
T cd03261 107 --RLSEEEIREIVLEKLEAVGLRGAEDLYPA-----ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLI 179 (235)
T ss_pred --CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHH
Confidence 23445556788999999999887777765 49999999999999999999999999999999999999999999
Q ss_pred HHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 155 GEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 155 ~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++++ |+|||+++|+++ ++.++||++++|++|++++.|++++
T Consensus 180 ~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 223 (235)
T cd03261 180 RSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPEE 223 (235)
T ss_pred HHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHHH
Confidence 999874 899999999987 6888999999999999999987654
No 36
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=5.2e-40 Score=345.82 Aligned_cols=187 Identities=29% Similarity=0.462 Sum_probs=167.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc--ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES--RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
++|+||||||||||+++|+|+++|. +|+|.++|+++.. ...++.+||++|+..+++.+||.||+.+....+ ..
T Consensus 70 ~gLlGpNGaGKSTLl~~L~Gl~~p~--~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~ 144 (340)
T PRK13536 70 FGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GM 144 (340)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCC--ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CC
Confidence 5899999999999999999998864 5999999998753 234567999999999999999999999766543 23
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
+..+..++++++++.++|.+..++.+++ ||||||||++||++|+++|++|||||||+|||+.++..+.+.|++++
T Consensus 145 ~~~~~~~~~~~ll~~~~L~~~~~~~~~~-----LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~ 219 (340)
T PRK13536 145 STREIEAVIPSLLEFARLESKADARVSD-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 219 (340)
T ss_pred CHHHHHHHHHHHHHHcCCchhhCCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 4455567788999999999988888865 99999999999999999999999999999999999999999999998
Q ss_pred hcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 159 KSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++|+|||++||+++ ++.++||++++|++|++++.|++++
T Consensus 220 ~~g~tilisSH~l~-e~~~~~d~i~il~~G~i~~~g~~~~ 258 (340)
T PRK13536 220 ARGKTILLTTHFME-EAERLCDRLCVLEAGRKIAEGRPHA 258 (340)
T ss_pred hCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 88999999999997 7999999999999999999998876
No 37
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=5.2e-40 Score=347.35 Aligned_cols=187 Identities=24% Similarity=0.421 Sum_probs=167.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc---cc----cceEEEEccCCcCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR---LL----KIISAYVMQDELLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~---~~----~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~ 73 (602)
++|+|||||||||||++|+|+.+| .+|+|.++|+++... .. ++.++||+|+..++|++||+||+.|.....
T Consensus 22 ~~l~G~sGsGKSTLLr~L~Gl~~p--~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~ 99 (363)
T TIGR01186 22 FVIMGLSGSGKSTTVRMLNRLIEP--TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELL 99 (363)
T ss_pred EEEECCCCChHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHc
Confidence 489999999999999999999985 469999999988642 22 567999999999999999999999976543
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 007474 74 LPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKV 153 (602)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (602)
..++++..+++.++++.+||++..++++++ |||||||||+|||||+.+|++|||||||++||+.++..+.+.
T Consensus 100 ---~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~-----LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~ 171 (363)
T TIGR01186 100 ---GWPEQERKEKALELLKLVGLEEYEHRYPDE-----LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDE 171 (363)
T ss_pred ---CCCHHHHHHHHHHHHHhcCCchhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 345667778999999999999888877764 999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 154 LGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 154 l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
|+++.++ |+|||++||++. ++.+++|++++|++|+++..|++++
T Consensus 172 l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~e 216 (363)
T TIGR01186 172 LKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDE 216 (363)
T ss_pred HHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHH
Confidence 9999764 899999999987 6899999999999999999998776
No 38
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=4.7e-40 Score=349.73 Aligned_cols=187 Identities=25% Similarity=0.405 Sum_probs=167.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc-cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR-LLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
++|+|||||||||||++|+|+.++ .+|+|.++|+++... ..++.++||+|+..+||++||.||+.|+.+.+ ..+
T Consensus 43 ~~LlGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~ 117 (375)
T PRK09452 43 LTLLGPSGCGKTTVLRLIAGFETP--DSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTP 117 (375)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCC
Confidence 489999999999999999999885 459999999987532 23567999999999999999999999986533 345
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007474 80 KKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK 159 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~ 159 (602)
+.+.+++++++++.+||++..++++. .|||||||||+|||+|+.+|++|+|||||+|||...+..+.+.|+++++
T Consensus 118 ~~~~~~~~~~~l~~~~l~~~~~~~p~-----~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 192 (375)
T PRK09452 118 AAEITPRVMEALRMVQLEEFAQRKPH-----QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQR 192 (375)
T ss_pred HHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 56667889999999999998887765 4999999999999999999999999999999999999999999999987
Q ss_pred c-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 160 S-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+ |.|+|++||++. ++..++|++++|++|+++..|++.+
T Consensus 193 ~~g~tiI~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~ 231 (375)
T PRK09452 193 KLGITFVFVTHDQE-EALTMSDRIVVMRDGRIEQDGTPRE 231 (375)
T ss_pred hcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 5 999999999987 7999999999999999999998766
No 39
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=5.9e-40 Score=347.10 Aligned_cols=190 Identities=24% Similarity=0.426 Sum_probs=167.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc-cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCC-CCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR-LLKIISAYVMQDELLFPMLTVEETLMFSAECRLP-RSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~-~~~ 78 (602)
++|+|||||||||||++|+|+.++. +|+|.++|+++... ..++.++||+|+..++|++||+||+.|....+.. ...
T Consensus 31 ~~llGpsGsGKSTLLr~IaGl~~p~--~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~ 108 (353)
T PRK10851 31 VALLGPSGSGKTTLLRIIAGLEHQT--SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERP 108 (353)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCC
Confidence 4899999999999999999998854 59999999987532 2345699999999999999999999997653211 123
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
++++.+++++++++.++|.+..++++. .|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 109 ~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~ 183 (353)
T PRK10851 109 NAAAIKAKVTQLLEMVQLAHLADRYPA-----QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLH 183 (353)
T ss_pred CHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 456677899999999999988887765 499999999999999999999999999999999999999999999998
Q ss_pred hc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 159 KS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 159 ~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++ |.|+|++||++. ++.+++|++++|++|+++..|++++
T Consensus 184 ~~~g~tii~vTHd~~-ea~~~~Dri~vl~~G~i~~~g~~~~ 223 (353)
T PRK10851 184 EELKFTSVFVTHDQE-EAMEVADRVVVMSQGNIEQAGTPDQ 223 (353)
T ss_pred HhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 76 899999999987 6999999999999999999998776
No 40
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-39 Score=322.71 Aligned_cols=183 Identities=32% Similarity=0.522 Sum_probs=159.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc-cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR-LLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
++|+||||||||||+++|+|+++| .+|+|.++|+++... ..++.++|++|++.+++.+||+||+.+..... ...
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~ 103 (213)
T cd03259 29 LALLGPSGCGKTTLLRLIAGLERP--DSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVP 103 (213)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCC
Confidence 489999999999999999999875 459999999987532 23456899999999999999999998865432 233
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007474 80 KKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK 159 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~ 159 (602)
..+.+++++++++.+||.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 104 ~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~ 178 (213)
T cd03259 104 KAEIRARVRELLELVGLEGLLNRYPHE-----LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQR 178 (213)
T ss_pred HHHHHHHHHHHHHHcCChhhhhcChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 445567889999999998877777654 999999999999999999999999999999999999999999999987
Q ss_pred -cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecC
Q 007474 160 -SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSG 194 (602)
Q Consensus 160 -~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 194 (602)
.|+|||+++|+++ ++.++||++++|++|+++..|
T Consensus 179 ~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 179 ELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 4899999999987 688999999999999998765
No 41
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=8.4e-40 Score=324.06 Aligned_cols=179 Identities=31% Similarity=0.500 Sum_probs=156.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc------cccceEEEEccCCcCCCCCCHHHHHHHHHHhcC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR------LLKIISAYVMQDELLFPMLTVEETLMFSAECRL 74 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~------~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~ 74 (602)
++|+||||||||||+++|+|++++ .+|+|.++|+++... ..++.++|++|++.+++.+||.||+.+....+
T Consensus 32 ~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~- 108 (216)
T TIGR00960 32 VFLVGHSGAGKSTFLKLILGIEKP--TRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII- 108 (216)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc-
Confidence 489999999999999999999875 469999999987421 23567899999999999999999999875532
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 007474 75 PRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVL 154 (602)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (602)
....++.+++++++++.+||.+..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|
T Consensus 109 --~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 181 (216)
T TIGR00960 109 --GVPPRDANERVSAALEKVGLEGKAHALPM-----QLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLF 181 (216)
T ss_pred --CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 22344556789999999999887777765 49999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCce
Q 007474 155 GEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQT 190 (602)
Q Consensus 155 ~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 190 (602)
++++++|+|||+++|+++ ++.++||++++|++|++
T Consensus 182 ~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 182 EEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999878999999999987 58889999999999974
No 42
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-40 Score=348.34 Aligned_cols=187 Identities=29% Similarity=0.467 Sum_probs=167.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc-ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES-RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~-~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
++|+|||||||||||++|+|+.++. +|+|.++|+++.. ...++.+|||+|+..+||++||.||+.|..+.+ ..+
T Consensus 48 ~~llGpsGsGKSTLLr~IaGl~~p~--~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~ 122 (377)
T PRK11607 48 FALLGASGCGKSTLLRMLAGFEQPT--AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLP 122 (377)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCC--ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCC
Confidence 4899999999999999999998854 5999999998753 234567999999999999999999999986543 345
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007474 80 KKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK 159 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~ 159 (602)
+.+.+++++++++.++|.+..++.+. +|||||||||+|||||+.+|++|+|||||+|||...+..+.+.|+++.+
T Consensus 123 ~~~~~~~v~~~l~~l~L~~~~~~~~~-----~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 197 (377)
T PRK11607 123 KAEIASRVNEMLGLVHMQEFAKRKPH-----QLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILE 197 (377)
T ss_pred HHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 66777899999999999988877765 5999999999999999999999999999999999999999999999876
Q ss_pred -cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 160 -SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 160 -~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.|.|+|++||+++ ++..++|++++|++|+++..|++.+
T Consensus 198 ~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~ 236 (377)
T PRK11607 198 RVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPEE 236 (377)
T ss_pred hcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHHH
Confidence 4899999999987 7999999999999999999998876
No 43
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-39 Score=323.84 Aligned_cols=187 Identities=32% Similarity=0.505 Sum_probs=163.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc--ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES--RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
++|+||||||||||+++|+|++++ .+|+|.++|.++.. ...++.++|++|++.+++.+||+||+.+....+ ..
T Consensus 29 ~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~ 103 (220)
T cd03265 29 FGLLGPNGAGKTTTIKMLTTLLKP--TSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY---GV 103 (220)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc---CC
Confidence 489999999999999999999875 46999999987643 233456899999999999999999999875543 23
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
...+.+++++++++.+||.+..++.+++ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 104 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 178 (220)
T cd03265 104 PGAERRERIDELLDFVGLLEAADRLVKT-----YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLK 178 (220)
T ss_pred CHHHHHHHHHHHHHHcCCHHHhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHH
Confidence 3445567899999999999877777764 99999999999999999999999999999999999999999999998
Q ss_pred hc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 159 KS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 159 ~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++ |+|||+++|+++ ++.+++|++++|++|+++..|++++
T Consensus 179 ~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 179 EEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHH
Confidence 76 899999999987 6889999999999999998887543
No 44
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-39 Score=346.90 Aligned_cols=187 Identities=26% Similarity=0.449 Sum_probs=166.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc-cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR-LLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
++|+|||||||||||++|+|+++|. +|+|.++|+++... ..++.++||+|+..+++.+||+||+.|....+ ..+
T Consensus 32 ~~l~G~nGsGKSTLL~~iaGl~~p~--~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~ 106 (369)
T PRK11000 32 VVFVGPSGCGKSTLLRMIAGLEDIT--SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAK 106 (369)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCC--ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCC
Confidence 4899999999999999999998854 59999999987532 23456899999999999999999999876543 234
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007474 80 KKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK 159 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~ 159 (602)
+++.+++++++++.+||.+..++.++ .|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++.+
T Consensus 107 ~~~~~~~~~~~l~~lgL~~~~~~~~~-----~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~ 181 (369)
T PRK11000 107 KEEINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181 (369)
T ss_pred HHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 55667889999999999988887765 4999999999999999999999999999999999999999999999987
Q ss_pred c-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 160 S-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+ |.|+|++||+++ ++.+++|++++|++|+++..|++++
T Consensus 182 ~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~ 220 (369)
T PRK11000 182 RLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLE 220 (369)
T ss_pred HhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 5 899999999987 6899999999999999999998766
No 45
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.8e-39 Score=337.90 Aligned_cols=187 Identities=31% Similarity=0.492 Sum_probs=164.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc--ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES--RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
++|+|||||||||||++|+|+++|. +|+|.++|+++.. ...++.++|++|++.+++.+||+||+.+..... ..
T Consensus 33 ~~l~G~NGaGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~ 107 (303)
T TIGR01288 33 FGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GM 107 (303)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CC
Confidence 5899999999999999999998754 6999999998743 234567999999999999999999998755432 23
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
+..+.+++++++++.++|.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 108 ~~~~~~~~~~~ll~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 182 (303)
T TIGR01288 108 STREIEAVIPSLLEFARLESKADVRVAL-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 182 (303)
T ss_pred CHHHHHHHHHHHHHHCCChhHhcCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 4445566788999999999888887764 99999999999999999999999999999999999999999999998
Q ss_pred hcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 159 KSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++|+|||+++|+++ ++.++||++++|++|++++.|++++
T Consensus 183 ~~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 221 (303)
T TIGR01288 183 ARGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHA 221 (303)
T ss_pred hCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 88999999999997 6889999999999999999998766
No 46
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.3e-39 Score=325.23 Aligned_cols=190 Identities=31% Similarity=0.528 Sum_probs=162.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc---c-ccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR---L-LKIISAYVMQDELLFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~---~-~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~ 76 (602)
++|+|||||||||||++|+|++++ .+|+|.++|.++... . .++.++|++|++.+++.+||+||+.+........
T Consensus 29 ~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~ 106 (236)
T cd03219 29 HGLIGPNGAGKTTLFNLISGFLRP--TSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGS 106 (236)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcccc
Confidence 489999999999999999999875 459999999987532 1 2345899999999999999999998875432111
Q ss_pred C-------CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 007474 77 S-------VSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFK 149 (602)
Q Consensus 77 ~-------~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 149 (602)
. ....+..++++++++.+||++..++.++ .|||||||||+||++|+.+|++++|||||+|||+.++..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 181 (236)
T cd03219 107 GLLLARARREEREARERAEELLERVGLADLADRPAG-----ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEE 181 (236)
T ss_pred ccccccccccHHHHHHHHHHHHHHcCccchhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 0 0234456688999999999887777665 499999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 150 VVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 150 i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+.+.|++++++|+|||+++|+++ ++.++||++++|++|+++..|++++
T Consensus 182 l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 229 (236)
T cd03219 182 LAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQGRVIAEGTPDE 229 (236)
T ss_pred HHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEeecCHHH
Confidence 99999999878999999999997 6889999999999999999887655
No 47
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-39 Score=320.00 Aligned_cols=182 Identities=32% Similarity=0.540 Sum_probs=160.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+|||||||||||++|+|+.++ .+|+|.++|+++.. ..++.++|++|+..+++.+||+||+.+....+ ..+.
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~ 102 (210)
T cd03269 29 FGLLGPNGAGKTTTIRMILGIILP--DSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKK 102 (210)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHc---CCCh
Confidence 489999999999999999999875 46999999998754 34567899999999999999999998865543 2334
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKS 160 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~ 160 (602)
.+.+++++++++.+|+++..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 103 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~ 177 (210)
T cd03269 103 EEARRRIDEWLERLELSEYANKRVE-----ELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA 177 (210)
T ss_pred HHHHHHHHHHHHHcCChHHHhCcHh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC
Confidence 5556789999999999887777665 49999999999999999999999999999999999999999999999888
Q ss_pred CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecC
Q 007474 161 GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSG 194 (602)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 194 (602)
|+|||+++|++. ++.+++|++++|++|++++.|
T Consensus 178 ~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 178 GKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 999999999987 588899999999999998754
No 48
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.6e-41 Score=312.91 Aligned_cols=189 Identities=25% Similarity=0.496 Sum_probs=170.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc----cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR----LLKIISAYVMQDELLFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~----~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~ 76 (602)
++++|||||||||...++.|+.+++ +|+|.+||.+++.. ..|..+||+||+...|-.|||+||+....+.+..
T Consensus 33 VGLLGPNGAGKTT~Fymi~Glv~~d--~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~- 109 (243)
T COG1137 33 VGLLGPNGAGKTTTFYMIVGLVRPD--SGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK- 109 (243)
T ss_pred EEEECCCCCCceeEEEEEEEEEecC--CceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-
Confidence 5899999999999999999999865 59999999999753 2344589999999999999999999988776531
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
...+.+.+++++++|++++|.|+++++-.. ||||||||+.|||||+.+|+.++||||++|.||.+..+|.++++.
T Consensus 110 d~~~~~~~~~l~~LL~ef~i~hlr~~~a~s-----LSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~ 184 (243)
T COG1137 110 DLKKAERKEELDALLEEFHITHLRDSKAYS-----LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKH 184 (243)
T ss_pred chhHHHHHHHHHHHHHHhchHHHhcCcccc-----cccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHH
Confidence 223346677899999999999999987654 999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 157 IAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 157 l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
|+++|..|++|-|+.+ |...+|||.+++++|++..+|++++
T Consensus 185 L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~e 225 (243)
T COG1137 185 LKDRGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEE 225 (243)
T ss_pred HHhCCceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHH
Confidence 9999999999999998 7999999999999999999999987
No 49
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=2.4e-39 Score=324.17 Aligned_cols=187 Identities=29% Similarity=0.529 Sum_probs=162.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc---c-ccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR---L-LKIISAYVMQDELLFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~---~-~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~ 76 (602)
++|+|||||||||||++|+|+.++. +|+|.++|+++... . .++.++|++|++.+++.+||+||+.+....+
T Consensus 29 ~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--- 103 (232)
T cd03218 29 VGLLGPNGAGKTTTFYMIVGLVKPD--SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR--- 103 (232)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc---
Confidence 4899999999999999999998754 59999999987431 1 2346899999999999999999998865432
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
.....+..++++++++.+|+.+..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus 104 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~ 178 (232)
T cd03218 104 GLSKKEREEKLEELLEEFHITHLRKSKAS-----SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKI 178 (232)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 22344556788999999999887777765 4999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 157 IAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 157 l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++|+|||+++|+++ ++.+++|++++|++|+++..|+.++
T Consensus 179 ~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 219 (232)
T cd03218 179 LKDRGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEE 219 (232)
T ss_pred HHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHH
Confidence 9888999999999997 6899999999999999999887654
No 50
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2.2e-39 Score=321.45 Aligned_cols=183 Identities=30% Similarity=0.490 Sum_probs=160.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc--ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES--RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
++|+|||||||||||++|+|+.++ .+|+|.++|+++.. ...++.++|++|++.+++.+||+||+.+....+ ..
T Consensus 34 ~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~ 108 (218)
T cd03266 34 TGLLGPNGAGKTTTLRMLAGLLEP--DAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GL 108 (218)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CC
Confidence 489999999999999999999875 46999999998753 234567999999999999999999998765432 23
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
...+..++++++++.+||.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 109 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~ 183 (218)
T cd03266 109 KGDELTARLEELADRLGMEELLDRRVGG-----FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLR 183 (218)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHhhhhhh-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH
Confidence 4455667899999999999888777654 99999999999999999999999999999999999999999999998
Q ss_pred hcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecC
Q 007474 159 KSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSG 194 (602)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 194 (602)
++|+|||+++|++. ++.+++|++++|++|+++..|
T Consensus 184 ~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 184 ALGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HCCCEEEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence 78999999999986 688999999999999998754
No 51
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-39 Score=320.74 Aligned_cols=183 Identities=32% Similarity=0.495 Sum_probs=160.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+||||||||||+++|+|+.++ .+|+|.++|+++.. .++.++||+|++.+++.+||+||+.+....+ ....
T Consensus 33 ~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~ 105 (220)
T cd03293 33 VALVGPSGCGKSTLLRIIAGLERP--TSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQ---GVPK 105 (220)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECcc--ccCcEEEEecccccccCCCHHHHHHHHHHHc---CCCH
Confidence 489999999999999999999875 46999999998753 3566899999999999999999998875433 2334
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK- 159 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~- 159 (602)
.+..++++++++.+||.+..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+
T Consensus 106 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~ 180 (220)
T cd03293 106 AEARERAEELLELVGLSGFENAYPH-----QLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE 180 (220)
T ss_pred HHHHHHHHHHHHHcCChhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4556788999999999887777665 4999999999999999999999999999999999999999999999965
Q ss_pred cCcEEEEEEcCCcHHHHHHhhHHhhhc--CCceeecCCc
Q 007474 160 SGSVVIMSIHQPSYRIFSLLNRLIFLS--HGQTVYSGTP 196 (602)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~~L~--~G~iv~~G~~ 196 (602)
.|+|||+++|+++ ++.+++|++++|+ +|+++..+++
T Consensus 181 ~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 181 TGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred cCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 5899999999987 5889999999999 7999987764
No 52
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=3.5e-39 Score=318.85 Aligned_cols=183 Identities=27% Similarity=0.461 Sum_probs=159.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc-cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR-LLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
++|+||||||||||+++|+|++++ .+|+|.++|+++... ..++.++|++|++.+++.+||+||+.+....+ ...
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G~~~~--~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~ 103 (213)
T cd03301 29 VVLLGPSGCGKTTTLRMIAGLEEP--TSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVP 103 (213)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCC
Confidence 489999999999999999999875 459999999987532 22456899999999999999999998865432 234
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007474 80 KKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK 159 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~ 159 (602)
.++.+++++++++.+|+.+..++.+++ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 104 ~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 178 (213)
T cd03301 104 KDEIDERVREVAELLQIEHLLDRKPKQ-----LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQ 178 (213)
T ss_pred HHHHHHHHHHHHHHcCCHHHHhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 455667889999999999887777654 999999999999999999999999999999999999999999999987
Q ss_pred c-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecC
Q 007474 160 S-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSG 194 (602)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 194 (602)
+ |+|||+++|++. ++.+++|++++|++|++++.|
T Consensus 179 ~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 179 RLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 4 899999999986 688999999999999998875
No 53
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-39 Score=342.00 Aligned_cols=187 Identities=27% Similarity=0.431 Sum_probs=165.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc------cccceEEEEccCCcCCCCCCHHHHHHHHHHhcC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR------LLKIISAYVMQDELLFPMLTVEETLMFSAECRL 74 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~------~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~ 74 (602)
++|+||||||||||+|+|+|+++|. +|+|.++|+++... ..++.++||+|++.+++.+||+||+.+....+
T Consensus 34 ~~iiG~nGsGKSTLlk~L~Gl~~p~--~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~- 110 (343)
T PRK11153 34 FGVIGASGAGKSTLIRCINLLERPT--SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA- 110 (343)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCC--ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc-
Confidence 4899999999999999999998854 59999999987531 23567999999999999999999999876543
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 007474 75 PRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVL 154 (602)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (602)
..++.+.+++++++++.+||.+..++.+. .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|
T Consensus 111 --~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L 183 (343)
T PRK11153 111 --GTPKAEIKARVTELLELVGLSDKADRYPA-----QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL 183 (343)
T ss_pred --CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 23455666789999999999988777665 49999999999999999999999999999999999999999999
Q ss_pred HHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 155 GEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 155 ~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++++ |+|||++||+++ ++.++||++++|++|++++.|++.+
T Consensus 184 ~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~~~ 227 (343)
T PRK11153 184 KDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTVSE 227 (343)
T ss_pred HHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999875 899999999987 6889999999999999999998765
No 54
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-39 Score=324.32 Aligned_cols=190 Identities=25% Similarity=0.421 Sum_probs=162.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc-cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCC-CCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR-LLKIISAYVMQDELLFPMLTVEETLMFSAECRLP-RSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~-~~~ 78 (602)
++|+||||||||||+++|+|+.++ .+|+|.++|+++... ..++.++|++|++.+++.+||+||+.+....+.. ...
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 108 (239)
T cd03296 31 VALLGPSGSGKTTLLRLIAGLERP--DSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERP 108 (239)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccC
Confidence 489999999999999999999875 469999999987532 2245689999999999999999999886543211 001
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
...+..++++++++.+||.+..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 109 ~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 183 (239)
T cd03296 109 PEAEIRAKVHELLKLVQLDWLADRYPA-----QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLH 183 (239)
T ss_pred CHHHHHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 233445678999999999887777765 499999999999999999999999999999999999999999999998
Q ss_pred hc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 159 KS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 159 ~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++ |+|||+++|+++ ++.+++|++++|++|++++.|++++
T Consensus 184 ~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 223 (239)
T cd03296 184 DELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDE 223 (239)
T ss_pred HHcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHH
Confidence 75 899999999987 5889999999999999999987654
No 55
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-39 Score=324.58 Aligned_cols=190 Identities=31% Similarity=0.489 Sum_probs=160.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc------cccceEEEEccCCcCCCCCCHHHHHHHHHHhcC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR------LLKIISAYVMQDELLFPMLTVEETLMFSAECRL 74 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~------~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~ 74 (602)
++|+||||||||||+++|+|++++ .+|+|.++|+++... ..++.++|++|++.+++.+||+||+.+......
T Consensus 30 ~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 107 (241)
T cd03256 30 VALIGPSGAGKSTLLRCLNGLVEP--TSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRR 107 (241)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccc
Confidence 489999999999999999999875 459999999987531 235568999999999999999999987532110
Q ss_pred -----CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 007474 75 -----PRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFK 149 (602)
Q Consensus 75 -----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 149 (602)
.......+..++++++++.+||.+..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 182 (241)
T cd03256 108 STWRSLFGLFPKEEKQRALAALERVGLLDKAYQRAD-----QLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQ 182 (241)
T ss_pred hhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHH
Confidence 0011123445678899999999877776655 599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 150 VVKVLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 150 i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+.+.|++++++ |+|||+++|+++ ++.+++|++++|++|++++.|++++
T Consensus 183 l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (241)
T cd03256 183 VMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGRIVFDGPPAE 231 (241)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCHHH
Confidence 99999999864 899999999997 5888999999999999999988765
No 56
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-39 Score=322.92 Aligned_cols=187 Identities=29% Similarity=0.454 Sum_probs=162.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc------cccceEEEEccCCcCCCCCCHHHHHHHHHHhcC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR------LLKIISAYVMQDELLFPMLTVEETLMFSAECRL 74 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~------~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~ 74 (602)
++|+||||||||||+++|+|++++. +|+|.++|+++... ..++.++|++|++.+++.+|++||+.+....+
T Consensus 34 ~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~- 110 (233)
T cd03258 34 FGIIGRSGAGKSTLIRCINGLERPT--SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA- 110 (233)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc-
Confidence 5899999999999999999998854 59999999987531 22566899999999999999999998865433
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 007474 75 PRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVL 154 (602)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (602)
.....+..++++++++.+||.+..++.+. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus 111 --~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l 183 (233)
T cd03258 111 --GVPKAEIEERVLELLELVGLEDKADAYPA-----QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALL 183 (233)
T ss_pred --CCCHHHHHHHHHHHHHHCCChhhhhcChh-----hCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHH
Confidence 23344556788999999999887777665 59999999999999999999999999999999999999999999
Q ss_pred HHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 155 GEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 155 ~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++++ |+|||+++|+++ ++.+++|++++|++|+++..|++++
T Consensus 184 ~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (233)
T cd03258 184 RDINRELGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGTVEE 227 (233)
T ss_pred HHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHH
Confidence 999875 899999999986 6888999999999999999887654
No 57
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-39 Score=332.26 Aligned_cols=201 Identities=27% Similarity=0.448 Sum_probs=168.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc-------ccccceEEEEccCC--cCCCCCCHHHHHHHHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES-------RLLKIISAYVMQDE--LLFPMLTVEETLMFSAE 71 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~yv~Q~~--~l~~~lTV~e~l~f~~~ 71 (602)
++|+||||||||||+++|+|++++. +|+|.++|.++.. ...++.++||+|++ .+++ .||.||+.|...
T Consensus 35 v~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~ 111 (288)
T PRK13643 35 TALIGHTGSGKSTLLQHLNGLLQPT--EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQ 111 (288)
T ss_pred EEEECCCCChHHHHHHHHhcCCCCC--CcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHH
Confidence 5899999999999999999998854 5999999998742 13456799999986 4555 699999998764
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 72 CRLPRSVSKKRKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 72 ~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
.. ..++.+.++++.++++.+||. +..++.+. .||||||||++||++|+.+|++|+|||||+|||+.++..+
T Consensus 112 ~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l 183 (288)
T PRK13643 112 NF---GIPKEKAEKIAAEKLEMVGLADEFWEKSPF-----ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEM 183 (288)
T ss_pred Hc---CCCHHHHHHHHHHHHHHcCCChhhccCCcc-----cCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHH
Confidence 32 345566778899999999996 45565554 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccchH--HHHHHHcCCCCCC
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPATDF--SLFFAEFGHPIPE 213 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~--~~~f~~~g~~~p~ 213 (602)
.+.|++++++|+|||++||+++ ++.++||++++|++|++++.|++++.. ...++..|..+|.
T Consensus 184 ~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 247 (288)
T PRK13643 184 MQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPK 247 (288)
T ss_pred HHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCCCCCh
Confidence 9999999888999999999986 688999999999999999999987622 2334455665553
No 58
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=4.2e-39 Score=334.74 Aligned_cols=186 Identities=30% Similarity=0.510 Sum_probs=165.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc--ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES--RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
++|+|||||||||||++|+|++++. +|+|.++|+++.. ...++.+||++|++.+++.+||.||+.+.+.++ ..
T Consensus 31 ~~l~G~NGaGKTTLl~~l~Gl~~~~--~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~ 105 (301)
T TIGR03522 31 VGFLGPNGAGKSTTMKIITGYLPPD--SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GM 105 (301)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CC
Confidence 4899999999999999999998854 5999999998753 234567999999999999999999999877653 23
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
+.++..++++++++.+||.+..++.++. ||||||||++||+||+++|++|+|||||+|||+.++..+.+.|++++
T Consensus 106 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~ 180 (301)
T TIGR03522 106 KGQLLKQRVEEMIELVGLRPEQHKKIGQ-----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG 180 (301)
T ss_pred CHHHHHHHHHHHHHHCCCchHhcCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc
Confidence 4455667899999999999988887764 99999999999999999999999999999999999999999999996
Q ss_pred hcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 159 KSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+ ++|||+++|+++ ++.++|||+++|++|++++.|+.++
T Consensus 181 ~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~ 218 (301)
T TIGR03522 181 K-DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDE 218 (301)
T ss_pred C-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 5 799999999997 6999999999999999999998776
No 59
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=4.8e-39 Score=319.03 Aligned_cols=178 Identities=33% Similarity=0.536 Sum_probs=154.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccccc-------ccceEEEEccCCcCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRL-------LKIISAYVMQDELLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~-------~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~ 73 (602)
++|+|||||||||||++|+|++++ .+|+|.++|+++.... .++.++|++|++.+++.+||+||+.+....+
T Consensus 33 ~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 110 (218)
T cd03255 33 VAIVGPSGSGKSTLLNILGGLDRP--TSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA 110 (218)
T ss_pred EEEEcCCCCCHHHHHHHHhCCcCC--CceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc
Confidence 489999999999999999999875 4699999999875311 2456899999999999999999999876533
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 007474 74 LPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKV 153 (602)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (602)
.....+.+++++++++.+||.+..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.
T Consensus 111 ---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~ 182 (218)
T cd03255 111 ---GVPKKERRERAEELLERVGLGDRLNHYPS-----ELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMEL 182 (218)
T ss_pred ---CCCHHHHHHHHHHHHHHcCCchhhhcChh-----hcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 22334456788999999999887777665 4999999999999999999999999999999999999999999
Q ss_pred HHHHHh-cCcEEEEEEcCCcHHHHHHhhHHhhhcCCce
Q 007474 154 LGEIAK-SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQT 190 (602)
Q Consensus 154 l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 190 (602)
|+++++ +|+|||+++|+++ ++. .||++++|++|++
T Consensus 183 l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 183 LRELNKEAGTTIVVVTHDPE-LAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHhcCCeEEEEECCHH-HHh-hhcEEEEeeCCcC
Confidence 999987 5899999999987 454 9999999999974
No 60
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1e-38 Score=318.61 Aligned_cols=189 Identities=47% Similarity=0.799 Sum_probs=160.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCC-CCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEK-ESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~-~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
++|+||||||||||+|+|+|++++ .+.+|+|.++|+++.....++.++|++|++.+++.+||+||+.+......+....
T Consensus 36 ~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~ 115 (226)
T cd03234 36 MAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSS 115 (226)
T ss_pred EEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccc
Confidence 489999999999999999999871 1246999999998765455677999999999999999999999876543322222
Q ss_pred HHHHHHHHHH-HHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 80 KKRKRERVEA-LIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 80 ~~~~~~~v~~-~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
.....+++++ .++.+++.+..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 116 ~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~ 190 (226)
T cd03234 116 DAIRKKRVEDVLLRDLALTRIGGNLVK-----GISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLA 190 (226)
T ss_pred hHHHHHHHHHHHHHhhcchhhhccccc-----CcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 2333345666 8999999877776655 599999999999999999999999999999999999999999999998
Q ss_pred hcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecC
Q 007474 159 KSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSG 194 (602)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 194 (602)
++|.|+|+++|++..++.+++|++++|++|++++.|
T Consensus 191 ~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 191 RRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 789999999999854699999999999999998765
No 61
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-38 Score=329.46 Aligned_cols=187 Identities=27% Similarity=0.454 Sum_probs=161.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc-----cccceEEEEccCCc-CCCCCCHHHHHHHHHHhcC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR-----LLKIISAYVMQDEL-LFPMLTVEETLMFSAECRL 74 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~-----~~~~~~~yv~Q~~~-l~~~lTV~e~l~f~~~~~~ 74 (602)
+||+||||||||||+++|+|+++|. +|+|.++|+++... ..++.+|||+|++. .+...||+||+.|.....
T Consensus 36 ~~i~G~nGaGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~- 112 (287)
T PRK13637 36 VGLIGHTGSGKSTLIQHLNGLLKPT--SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL- 112 (287)
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCC--ccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC-
Confidence 5899999999999999999998854 59999999987531 34567899999863 334579999999865432
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCC--cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 007474 75 PRSVSKKRKRERVEALIDQLGLR--SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK 152 (602)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (602)
..++++..++++++++.+||. +..|+.+. .||||||||++||+||+.+|++|+|||||+|||+.++..+.+
T Consensus 113 --~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~-----~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~ 185 (287)
T PRK13637 113 --GLSEEEIENRVKRAMNIVGLDYEDYKDKSPF-----ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILN 185 (287)
T ss_pred --CCCHHHHHHHHHHHHHHcCCCchhhccCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH
Confidence 345666778899999999997 55666554 599999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 153 VLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 153 ~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.|++++++ |+|||++||+++ ++.++|||+++|++|++++.|++++
T Consensus 186 ~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 186 KIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCELQGTPRE 231 (287)
T ss_pred HHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999875 999999999986 6888999999999999999998776
No 62
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.7e-39 Score=311.09 Aligned_cols=185 Identities=32% Similarity=0.487 Sum_probs=160.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc----cccceEEEEccCC--cCCCCCCHHHHHHHHHHhcC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR----LLKIISAYVMQDE--LLFPMLTVEETLMFSAECRL 74 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~----~~~~~~~yv~Q~~--~l~~~lTV~e~l~f~~~~~~ 74 (602)
++|+|+||||||||.++|+|+.++. +|+|.++|++..+. .+.+.+.+|+||+ .+.|..||++.|.-....
T Consensus 36 lgivGeSGsGKSTL~r~l~Gl~~p~--~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~-- 111 (252)
T COG1124 36 LGIVGESGSGKSTLARLLAGLEKPS--SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP-- 111 (252)
T ss_pred EEEEcCCCCCHHHHHHHHhcccCCC--CceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc--
Confidence 4899999999999999999999864 59999999887653 3567789999997 589999999999765542
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 007474 75 PRSVSKKRKRERVEALIDQLGLRSA-AKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKV 153 (602)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (602)
.+.++ .++++.++++.+||.+. ++++ +.+||||||||++|||||+.+|++|+||||||+||+..+.+|+++
T Consensus 112 -~~~~~--~~~~i~~~L~~VgL~~~~l~R~-----P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~Ilnl 183 (252)
T COG1124 112 -HGLSK--SQQRIAELLDQVGLPPSFLDRR-----PHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNL 183 (252)
T ss_pred -CCccH--HHHHHHHHHHHcCCCHHHHhcC-----chhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHH
Confidence 23333 34459999999999753 4443 456999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 154 LGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 154 l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
|.++.++ +.|.|+++||.+ -+..+|||+++|++|++++.++..+
T Consensus 184 L~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~G~ivE~~~~~~ 228 (252)
T COG1124 184 LLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDNGQIVEIGPTEE 228 (252)
T ss_pred HHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeCCeEEEeechhh
Confidence 9999874 889999999987 5999999999999999999998776
No 63
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=6.1e-39 Score=318.69 Aligned_cols=186 Identities=34% Similarity=0.542 Sum_probs=162.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc--ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES--RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
++|+||||||||||+++|+|+.++ .+|+|.++|+++.. ...++.++|++|++.+++.+||+||+.+....+ ..
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~ 105 (220)
T cd03263 31 FGLLGHNGAGKTTTLKMLTGELRP--TSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLK---GL 105 (220)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHc---CC
Confidence 489999999999999999999875 46999999998753 234556899999999999999999998865433 23
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
+..+.+++++++++.+||.+..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 106 ~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 180 (220)
T cd03263 106 PKSEIKEEVELLLRVLGLTDKANKRAR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR 180 (220)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHhChhh-----hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 344556788999999999887777765 499999999999999999999999999999999999999999999997
Q ss_pred hcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 159 KSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+ ++|||+++|+++ .+.+++|++++|++|+++..|++++
T Consensus 181 ~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 181 K-GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred c-CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHH
Confidence 6 599999999997 5888999999999999999887654
No 64
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.2e-39 Score=316.50 Aligned_cols=176 Identities=31% Similarity=0.475 Sum_probs=152.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCc-CCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDEL-LFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~-l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
++|+|||||||||||++|+|+.+| .+|+|.++|+++.....++.++|++|++. .+..+||+||+.+..... .
T Consensus 29 ~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~-----~ 101 (205)
T cd03226 29 IALTGKNGAGKTTLAKILAGLIKE--SSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL-----D 101 (205)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhc-----C
Confidence 489999999999999999999875 46999999998754444567899999974 344679999998754321 1
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007474 80 KKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK 159 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~ 159 (602)
+.+++++++++.+||.+..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 102 --~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 174 (205)
T cd03226 102 --AGNEQAETVLKDLDLYALKERHPL-----SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA 174 (205)
T ss_pred --ccHHHHHHHHHHcCCchhcCCCch-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 123578899999999988877765 4999999999999999999999999999999999999999999999988
Q ss_pred cCcEEEEEEcCCcHHHHHHhhHHhhhcCCcee
Q 007474 160 SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTV 191 (602)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 191 (602)
+|+|||+++|+++ ++.+++|++++|++|+++
T Consensus 175 ~~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 175 QGKAVIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 8999999999987 588899999999999875
No 65
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-38 Score=326.82 Aligned_cols=187 Identities=27% Similarity=0.433 Sum_probs=162.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc---c----ccceEEEEccCCcCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR---L----LKIISAYVMQDELLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~---~----~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~ 73 (602)
++|+||||||||||+++|+|++++. +|+|.++|+++... . .++.++|++|++.+++.+||+||+.+.....
T Consensus 53 ~~l~G~nGsGKSTLl~~L~Gl~~p~--~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 130 (269)
T cd03294 53 FVIMGLSGSGKSTLLRCINRLIEPT--SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ 130 (269)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc
Confidence 4899999999999999999998754 59999999987431 1 1356899999999999999999998875432
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 007474 74 LPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKV 153 (602)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (602)
.....+..++++++++.+||.+..++.+++ ||||||||++||++|+.+|++|||||||+|||+.++..+.+.
T Consensus 131 ---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~ 202 (269)
T cd03294 131 ---GVPRAEREERAAEALELVGLEGWEHKYPDE-----LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDE 202 (269)
T ss_pred ---CCCHHHHHHHHHHHHHHcCCHhHhhCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 223445567889999999999888877764 999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 154 LGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 154 l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
|++++++ |+|||+++|+++ ++.+++|++++|++|+++..|++++
T Consensus 203 l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 247 (269)
T cd03294 203 LLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEE 247 (269)
T ss_pred HHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999764 899999999987 5889999999999999999987655
No 66
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.9e-39 Score=316.84 Aligned_cols=182 Identities=34% Similarity=0.554 Sum_probs=158.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc--ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES--RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
++|+||||||||||+++|+|++++ .+|+|.++|+++.. ...++.++|++|++.+++.+||+||+.+....+ ..
T Consensus 28 ~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~ 102 (211)
T cd03264 28 YGLLGPNGAGKTTLMRILATLTPP--SSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GI 102 (211)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHh---CC
Confidence 489999999999999999999875 46999999987643 234567899999999999999999998865543 22
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
++.+.+++++++++.+||.+..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 103 ~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 177 (211)
T cd03264 103 PSKEVKARVDEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELG 177 (211)
T ss_pred CHHHHHHHHHHHHHHCCCHHHHhCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh
Confidence 334456788999999999887777665 499999999999999999999999999999999999999999999998
Q ss_pred hcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecC
Q 007474 159 KSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSG 194 (602)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 194 (602)
+ +.|||+++|+++ ++.+++|++++|++|+++..|
T Consensus 178 ~-~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 178 E-DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred C-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 6 589999999987 578899999999999998765
No 67
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=9e-39 Score=319.10 Aligned_cols=188 Identities=27% Similarity=0.391 Sum_probs=159.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCC-----CCCCceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRI-----EKESLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSA 70 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~-----~~~~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~ 70 (602)
++|+||||||||||+++|+|+. ++ .+|+|.++|+++.. ...++.++|++|++.++ .+||+||+.+..
T Consensus 29 ~~i~G~nGsGKSTLl~~i~G~~~~~~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~ 105 (227)
T cd03260 29 TALIGPSGCGKSTLLRLLNRLNDLIPGAP--DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGL 105 (227)
T ss_pred EEEECCCCCCHHHHHHHHHhhcccccCCC--CCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHH
Confidence 4899999999999999999998 54 46999999998743 22456789999998888 799999998865
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 71 ECRLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 71 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
..+. .....+.+++++++++.+||.+..++.+. ++.||||||||++||++|+.+|++|+|||||+|||+.++..+
T Consensus 106 ~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l 180 (227)
T cd03260 106 RLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKI 180 (227)
T ss_pred HhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence 4321 11223356788999999999877665530 246999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|++++++ +|||+++|+++ ++.++||++++|++|++++.|++++
T Consensus 181 ~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 181 EELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeCCEEEEecCccc
Confidence 9999999887 99999999987 6888999999999999999988654
No 68
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=4.9e-39 Score=316.71 Aligned_cols=179 Identities=27% Similarity=0.469 Sum_probs=156.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc-ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES-RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~-~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
++|+|||||||||||++|+|+.++ .+|+|.++|+++.. ...++.++|++|++.+++.+||+||+.+....+ ..
T Consensus 29 ~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~- 102 (208)
T cd03268 29 YGFLGPNGAGKTTTMKIILGLIKP--DSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLL---GI- 102 (208)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhc---CC-
Confidence 489999999999999999999875 46999999987643 233456899999999999999999998865432 11
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007474 80 KKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK 159 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~ 159 (602)
.+++++++++.++|.+..++.+++ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 103 ---~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 174 (208)
T cd03268 103 ---RKKRIDEVLDVVGLKDSAKKKVKG-----FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD 174 (208)
T ss_pred ---cHHHHHHHHHHcCCHHHHhhhHhh-----CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH
Confidence 245788999999999888777654 999999999999999999999999999999999999999999999988
Q ss_pred cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecC
Q 007474 160 SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSG 194 (602)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 194 (602)
+|+|||+++|++. ++.+++|++++|++|++++.|
T Consensus 175 ~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 175 QGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 8999999999987 588899999999999998765
No 69
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1e-38 Score=315.71 Aligned_cols=179 Identities=31% Similarity=0.510 Sum_probs=156.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc------cccceEEEEccCCcCCCCCCHHHHHHHHHHhcC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR------LLKIISAYVMQDELLFPMLTVEETLMFSAECRL 74 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~------~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~ 74 (602)
++|+||||||||||+++|+|++++ .+|+|.++|+++... ..++.++|++|++.+++.+||+||+.+....+
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~- 106 (214)
T cd03292 30 VFLVGPSGAGKSTLLKLIYKEELP--TSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT- 106 (214)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc-
Confidence 489999999999999999999875 469999999987431 24556899999999999999999999875432
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 007474 75 PRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVL 154 (602)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (602)
....++.+++++++++.+||++..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus 107 --~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l 179 (214)
T cd03292 107 --GVPPREIRKRVPAALELVGLSHKHRALPA-----ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLL 179 (214)
T ss_pred --CCCHHHHHHHHHHHHHHcCCHHHhhCChh-----hcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 23345556788999999999887777665 49999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCce
Q 007474 155 GEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQT 190 (602)
Q Consensus 155 ~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 190 (602)
++++++|+|||+++|++. .+.+++|++++|++|++
T Consensus 180 ~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 180 KKINKAGTTVVVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999878999999999986 58889999999999974
No 70
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-38 Score=321.76 Aligned_cols=187 Identities=28% Similarity=0.518 Sum_probs=162.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+|||||||||||++|+|+.++. +|+|.++|+++.. ...++.++|++|++.+++.+||+||+.+..... .
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~ 104 (242)
T cd03295 30 LVLIGPSGSGKTTTMKMINRLIEPT--SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---K 104 (242)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---C
Confidence 4899999999999999999998754 5999999998743 234556899999999999999999998865432 2
Q ss_pred CCHHHHHHHHHHHHHHcCCCc--ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRS--AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLG 155 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (602)
....+..+++.++++.+||.+ ..++.+. .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+
T Consensus 105 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~ 179 (242)
T cd03295 105 WPKEKIRERADELLALVGLDPAEFADRYPH-----ELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFK 179 (242)
T ss_pred CCHHHHHHHHHHHHHHcCCCcHHHHhcChh-----hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHH
Confidence 344555678899999999985 5666554 599999999999999999999999999999999999999999999
Q ss_pred HHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 156 EIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 156 ~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+++++ |+|||+++|+++ ++.+++|++++|++|++++.|++++
T Consensus 180 ~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 222 (242)
T cd03295 180 RLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPDE 222 (242)
T ss_pred HHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHH
Confidence 99875 899999999987 6889999999999999999887654
No 71
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-39 Score=313.53 Aligned_cols=190 Identities=30% Similarity=0.527 Sum_probs=169.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccccc----ccceEEEEccCCcCCCCCCHHHHHHHHHHhc---
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRL----LKIISAYVMQDELLFPMLTVEETLMFSAECR--- 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~----~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~--- 73 (602)
++|+||||||||||+|+|+|.++|+ +|+|.++|++++... .+..++--+|...+|++|||.||+..++..+
T Consensus 33 ~~LIGPNGAGKTTlfNlitG~~~P~--~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~ 110 (250)
T COG0411 33 VGLIGPNGAGKTTLFNLITGFYKPS--SGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGL 110 (250)
T ss_pred EEEECCCCCCceeeeeeecccccCC--CceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhh
Confidence 5899999999999999999999965 599999999987532 3445778899999999999999999886533
Q ss_pred -----CCCC-CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 007474 74 -----LPRS-VSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSA 147 (602)
Q Consensus 74 -----~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~ 147 (602)
.+.. ...++..+++.++|+.+||.+.+|+..|+ ||+|||||+.|||||+++|++|+||||.+||.+..+
T Consensus 111 ~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~-----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~ 185 (250)
T COG0411 111 SGLLGRPRARKEEREARERARELLEFVGLGELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEET 185 (250)
T ss_pred hhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhc-----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHH
Confidence 1111 13456678899999999999999999987 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 148 FKVVKVLGEIAK-SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 148 ~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.++.+.|+++++ .|.||+++-|+++ -++.+||||++|+.|+++..|+|++
T Consensus 186 ~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~G~~IAeG~P~e 236 (250)
T COG0411 186 EELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNYGEVIAEGTPEE 236 (250)
T ss_pred HHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccCCcCcccCCHHH
Confidence 999999999998 4699999999998 5999999999999999999999987
No 72
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.6e-38 Score=317.96 Aligned_cols=187 Identities=31% Similarity=0.459 Sum_probs=160.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+||||||||||+++|+|+.++ .+|+|.++|+++..... ..+|++|++.+++.+||.||+.+......+ ...+
T Consensus 14 ~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~-~~~~ 88 (230)
T TIGR01184 14 ISLIGHSGCGKSTLLNLISGLAQP--TSGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENIALAVDRVLP-DLSK 88 (230)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHHHHHHHhccc-CCCH
Confidence 589999999999999999999875 46999999998754222 248999999999999999999886431111 2344
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKS 160 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~ 160 (602)
.+.+++++++++.+||.+..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 89 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~ 163 (230)
T TIGR01184 89 SERRAIVEEHIALVGLTEAADKRPG-----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEE 163 (230)
T ss_pred HHHHHHHHHHHHHcCCHHHHcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh
Confidence 5556778999999999887777765 49999999999999999999999999999999999999999999999875
Q ss_pred -CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 161 -GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 161 -g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
|+|||+++|+++ ++.+++|++++|++|+++..|+..+
T Consensus 164 ~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 164 HRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred cCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCcee
Confidence 899999999987 6889999999999999998886543
No 73
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.5e-38 Score=314.64 Aligned_cols=178 Identities=34% Similarity=0.533 Sum_probs=155.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc------cccceEEEEccCCcCCCCCCHHHHHHHHHHhcC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR------LLKIISAYVMQDELLFPMLTVEETLMFSAECRL 74 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~------~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~ 74 (602)
++|+||||||||||+++|+|++++ .+|+|.++|+++... ..++.++|++|++.+++.+||.||+.+....+
T Consensus 31 ~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~- 107 (214)
T TIGR02673 31 LFLTGPSGAGKTTLLKLLYGALTP--SRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR- 107 (214)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc-
Confidence 489999999999999999999875 469999999987531 23566899999999999999999999875432
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 007474 75 PRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVL 154 (602)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (602)
.....+.+++++++++.+||.+..++.+. .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|
T Consensus 108 --~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 180 (214)
T TIGR02673 108 --GKKEREIQRRVGAALRQVGLEHKADAFPE-----QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLL 180 (214)
T ss_pred --CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 23344556788999999999877776665 49999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCc
Q 007474 155 GEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQ 189 (602)
Q Consensus 155 ~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 189 (602)
++++++|+|||+++|+++ ++.++||++++|++|+
T Consensus 181 ~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 181 KRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence 999878999999999987 6888999999999885
No 74
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=7e-39 Score=323.12 Aligned_cols=190 Identities=29% Similarity=0.437 Sum_probs=160.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc------cccceEEEEccCCcCCCCCCHHHHHHHHHHhcC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR------LLKIISAYVMQDELLFPMLTVEETLMFSAECRL 74 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~------~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~ 74 (602)
++|+||||||||||+++|+|+.++ .+|+|.++|+++... ..++.++|++|++.+++.+||+||+.+......
T Consensus 31 ~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 108 (243)
T TIGR02315 31 VAIIGPSGAGKSTLLRCINRLVEP--SSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYK 108 (243)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCC--CccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccc
Confidence 489999999999999999999875 469999999987431 235668999999999999999999976432100
Q ss_pred --C---CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 007474 75 --P---RSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFK 149 (602)
Q Consensus 75 --~---~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 149 (602)
. ....+.+.+++++++++.+||.+..++.+. .||||||||++||++|+.+|++|+|||||+|||+.++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 183 (243)
T TIGR02315 109 PTWRSLLGRFSEEDKERALSALERVGLADKAYQRAD-----QLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQ 183 (243)
T ss_pred cchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 0 011123445788999999999887776655 599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 150 VVKVLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 150 i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+.+.|++++++ |+|||+++|+++ ++.++||++++|++|+++..|++++
T Consensus 184 l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (243)
T TIGR02315 184 VMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKAGEIVFDGAPSE 232 (243)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecCCHHH
Confidence 99999999764 899999999987 5889999999999999999887655
No 75
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.1e-38 Score=334.69 Aligned_cols=185 Identities=29% Similarity=0.458 Sum_probs=163.6
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc-cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCHH
Q 007474 3 ILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR-LLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSKK 81 (602)
Q Consensus 3 i~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~~ 81 (602)
|+|||||||||||++|+|+.++. +|+|.++|+++... ..++.++|++|+..+++.+||+||+.|....+ ..++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~--~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD--SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC--ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 68999999999999999998854 59999999987532 23556899999999999999999999876532 23445
Q ss_pred HHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-
Q 007474 82 RKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKS- 160 (602)
Q Consensus 82 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~- 160 (602)
+.+++++++++.+||.+..++.+. .|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKPH-----QLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 566789999999999988877765 49999999999999999999999999999999999999999999999865
Q ss_pred CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 161 GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
|+|||++||++. ++.+++|++++|++|+++..|++++
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~ 187 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEE 187 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 899999999987 6899999999999999999998766
No 76
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-38 Score=325.66 Aligned_cols=187 Identities=25% Similarity=0.354 Sum_probs=161.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCc-CCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDEL-LFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~-l~~~lTV~e~l~f~~~~~~~~ 76 (602)
++|+||||||||||+++|+|+++|. +|+|.++|+++.. ...++.++||+|++. .++..||.||+.|.....
T Consensus 34 ~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~--- 108 (274)
T PRK13647 34 TALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM--- 108 (274)
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCC--ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---
Confidence 5899999999999999999998854 5999999998753 223456999999963 455689999998864422
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
...+.+.+++++++++.+||.+..++.+. .||||||||++||+||+.+|++|+|||||+|||+.++.++.+.|++
T Consensus 109 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 183 (274)
T PRK13647 109 GLDKDEVERRVEEALKAVRMWDFRDKPPY-----HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDR 183 (274)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 23445566789999999999888877765 4999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 157 IAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 157 l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++|+|||+++|+++ .+.++||++++|++|++++.|++++
T Consensus 184 ~~~~g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 224 (274)
T PRK13647 184 LHNQGKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSL 224 (274)
T ss_pred HHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 9878999999999987 5889999999999999999998753
No 77
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.5e-38 Score=320.25 Aligned_cols=188 Identities=31% Similarity=0.539 Sum_probs=162.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLP 75 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~ 75 (602)
++|+||||||||||+++|+|++++ .+|+|.++|+++.. ...++.++|++|++.+++.+||+||+.+.....
T Consensus 30 ~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-- 105 (240)
T PRK09493 30 VVIIGPSGSGKSTLLRCINKLEEI--TSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV-- 105 (240)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh--
Confidence 489999999999999999999875 45999999998753 123556899999999999999999998764211
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 007474 76 RSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLG 155 (602)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (602)
......+.+++++++++.+||++..++.+. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 106 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~ 180 (240)
T PRK09493 106 RGASKEEAEKQARELLAKVGLAERAHHYPS-----ELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQ 180 (240)
T ss_pred cCCCHHHHHHHHHHHHHHcCChHHHhcChh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 123445566788999999999887777665 499999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 156 EIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 156 ~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+++++|+|||+++|++. ++.++||++++|++|++++.|++++
T Consensus 181 ~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 222 (240)
T PRK09493 181 DLAEEGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQV 222 (240)
T ss_pred HHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHH
Confidence 99878999999999987 5888999999999999999987655
No 78
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-38 Score=340.09 Aligned_cols=187 Identities=27% Similarity=0.436 Sum_probs=164.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc---c----ccceEEEEccCCcCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR---L----LKIISAYVMQDELLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~---~----~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~ 73 (602)
++|+|||||||||||++|+|+++|. +|+|.++|+++... . .++.++||+|+..+++++||+||+.+....+
T Consensus 57 ~~LvG~NGsGKSTLLr~I~Gl~~p~--sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~ 134 (400)
T PRK10070 57 FVIMGLSGSGKSTMVRLLNRLIEPT--RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA 134 (400)
T ss_pred EEEECCCCchHHHHHHHHHcCCCCC--CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc
Confidence 4899999999999999999998854 59999999987531 1 2356899999999999999999999876543
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 007474 74 LPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKV 153 (602)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (602)
..+..+.+++++++++.+||.+..++.+. .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.
T Consensus 135 ---~~~~~~~~~~~~e~L~~~gL~~~~~~~~~-----~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~ 206 (400)
T PRK10070 135 ---GINAEERREKALDALRQVGLENYAHSYPD-----ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDE 206 (400)
T ss_pred ---CCCHHHHHHHHHHHHHHcCCChhhhcCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHH
Confidence 23455666789999999999988877765 4999999999999999999999999999999999999999999
Q ss_pred HHHHHh-cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 154 LGEIAK-SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 154 l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
|+++++ .|+|||+++|+++ ++.+++|++++|++|+++..|++++
T Consensus 207 L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~G~i~~~g~~~~ 251 (400)
T PRK10070 207 LVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQNGEVVQVGTPDE 251 (400)
T ss_pred HHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEECCEEEecCCHHH
Confidence 999976 5899999999987 6889999999999999999998765
No 79
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=9.4e-39 Score=341.77 Aligned_cols=190 Identities=27% Similarity=0.430 Sum_probs=164.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCC-
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPR- 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~- 76 (602)
++|+||||||||||||+|+|+++|. +|+|.++|+++.. ...++.+|||+|+..+++.+||+||+.+....+...
T Consensus 32 v~liGpNGaGKSTLLk~LaGll~p~--sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~ 109 (402)
T PRK09536 32 VGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRF 109 (402)
T ss_pred EEEECCCCchHHHHHHHHhcCCCCC--CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccc
Confidence 4899999999999999999998854 5999999998753 345667999999999999999999998854311100
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
.....+.+++++++++.+|+.+..++.+. .||||||||+.||++|+++|++|+|||||+|||+.++.++++.|++
T Consensus 110 ~~~~~~~~~~v~~~le~vgl~~~~~~~~~-----~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~ 184 (402)
T PRK09536 110 DTWTETDRAAVERAMERTGVAQFADRPVT-----SLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRR 184 (402)
T ss_pred cCCCHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 11123456789999999999988887765 4999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 157 IAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 157 l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++|+|||+++|+++ ++.++|||+++|++|+++..|++++
T Consensus 185 l~~~g~TIIivsHdl~-~~~~~adrii~l~~G~iv~~G~~~e 225 (402)
T PRK09536 185 LVDDGKTAVAAIHDLD-LAARYCDELVLLADGRVRAAGPPAD 225 (402)
T ss_pred HHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHH
Confidence 9888999999999997 6889999999999999999999875
No 80
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.2e-38 Score=316.88 Aligned_cols=185 Identities=28% Similarity=0.527 Sum_probs=158.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc---c-ccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR---L-LKIISAYVMQDELLFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~---~-~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~ 76 (602)
++|+|||||||||||++|+|++++ .+|+|.++|+++... . .++.++|++|++.+++.+|++||+.+......
T Consensus 29 ~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-- 104 (222)
T cd03224 29 VALLGRNGAGKTTLLKTIMGLLPP--RSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-- 104 (222)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC--
Confidence 489999999999999999999885 459999999987532 1 24568999999999999999999988654321
Q ss_pred CCCHHHHHHHHHHHHHHc-CCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQL-GLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLG 155 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (602)
..+.+++++++++.+ ++.+..++.+. .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+
T Consensus 105 ---~~~~~~~~~~~l~~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 176 (222)
T cd03224 105 ---RAKRKARLERVYELFPRLKERRKQLAG-----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIR 176 (222)
T ss_pred ---chhHHHHHHHHHHHHHhhhhhhhCchh-----hCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHH
Confidence 223456678888888 57776676665 499999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 156 EIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 156 ~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+++++|+|||+++|+++ ++.+++|++++|++|+++..|++++
T Consensus 177 ~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (222)
T cd03224 177 ELRDEGVTILLVEQNAR-FALEIADRAYVLERGRVVLEGTAAE 218 (222)
T ss_pred HHHHCCCEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCHHH
Confidence 99878899999999987 6889999999999999999887654
No 81
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-38 Score=329.77 Aligned_cols=187 Identities=26% Similarity=0.437 Sum_probs=160.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---------------------------ccccceEEEEccC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---------------------------RLLKIISAYVMQD 53 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---------------------------~~~~~~~~yv~Q~ 53 (602)
++|+||||||||||+++|+|+++|. +|+|.++|++... ...++.+|||+|+
T Consensus 36 v~iiG~nGsGKSTLl~~L~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~ 113 (305)
T PRK13651 36 IAIIGQTGSGKTTFIEHLNALLLPD--TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQF 113 (305)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCC--CcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeC
Confidence 5899999999999999999999864 5999999876421 1235678999998
Q ss_pred C-cCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCc
Q 007474 54 E-LLFPMLTVEETLMFSAECRLPRSVSKKRKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPI 131 (602)
Q Consensus 54 ~-~l~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~ 131 (602)
+ ..+...||+||+.|..... ..++++.+++++++++.+||. +..++.+. .|||||||||+||++|+.+|+
T Consensus 114 ~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~LSgGqkqrvalA~aL~~~P~ 185 (305)
T PRK13651 114 AEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGLDESYLQRSPF-----ELSGGQKRRVALAGILAMEPD 185 (305)
T ss_pred cccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCChh-----hCCHHHHHHHHHHHHHHhCCC
Confidence 5 3344579999999875432 345667778899999999996 56776655 599999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 132 LLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 132 lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+++||+++|++|++++.|++++
T Consensus 186 lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~adrv~vl~~G~i~~~g~~~~ 251 (305)
T PRK13651 186 FLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD-NVLEWTKRTIFFKDGKIIKDGDTYD 251 (305)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999888999999999987 5889999999999999999998776
No 82
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-38 Score=317.17 Aligned_cols=184 Identities=28% Similarity=0.422 Sum_probs=157.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccccc------c-cceEEEEccCCcCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRL------L-KIISAYVMQDELLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~------~-~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~ 73 (602)
++|+||||||||||+++|+|++++ .+|+|.++|+++.... . ++.++|++|+..+++.+||+||+.+.....
T Consensus 38 ~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 115 (233)
T PRK11629 38 MAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG 115 (233)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 489999999999999999999875 4699999999875321 1 256899999999999999999999865432
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 007474 74 LPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKV 153 (602)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (602)
...+++.+++++++++.+||.+..++.+. .||||||||++||++|+.+|++|||||||+|||+.++..+.+.
T Consensus 116 ---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 187 (233)
T PRK11629 116 ---KKKPAEINSRALEMLAAVGLEHRANHRPS-----ELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQL 187 (233)
T ss_pred ---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 23344556789999999999887776665 4999999999999999999999999999999999999999999
Q ss_pred HHHHHh-cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCc
Q 007474 154 LGEIAK-SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTP 196 (602)
Q Consensus 154 l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 196 (602)
|+++++ +|+|||+++|+++ ++.. +|++++|++|+++..++.
T Consensus 188 l~~~~~~~g~tvii~sH~~~-~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 188 LGELNRLQGTAFLVVTHDLQ-LAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHHHhCCCEEEEEeCCHH-HHHh-hCEEEEEECCEEEEEecc
Confidence 999976 5899999999987 4554 689999999999987764
No 83
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-38 Score=327.86 Aligned_cols=186 Identities=29% Similarity=0.467 Sum_probs=160.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc-------ccccceEEEEccCC--cCCCCCCHHHHHHHHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES-------RLLKIISAYVMQDE--LLFPMLTVEETLMFSAE 71 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~yv~Q~~--~l~~~lTV~e~l~f~~~ 71 (602)
++|+||||||||||+++|+|+.++. +|+|.++|+++.. ...++.++||+|++ .++ ..||.||+.|...
T Consensus 36 ~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~ 112 (290)
T PRK13634 36 VAIIGHTGSGKSTLLQHLNGLLQPT--SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPM 112 (290)
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCC--CcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHH
Confidence 5899999999999999999998854 5999999998742 13456799999985 455 4699999998754
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 72 CRLPRSVSKKRKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 72 ~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
.. ..++.+.+++++++++.+||. +..++.+. .|||||||||+||++|+.+|++|||||||+|||+.++..+
T Consensus 113 ~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l 184 (290)
T PRK13634 113 NF---GVSEEDAKQKAREMIELVGLPEELLARSPF-----ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEM 184 (290)
T ss_pred Hc---CCCHHHHHHHHHHHHHHCCCChhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 32 345556667899999999997 55666655 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|++++++ |.|||+++|+++ ++.+++||+++|++|++++.|++++
T Consensus 185 ~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 185 MEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999875 999999999987 6889999999999999999998765
No 84
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=2e-38 Score=321.18 Aligned_cols=188 Identities=27% Similarity=0.445 Sum_probs=162.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc-----------ccccceEEEEccCCcCCCCCCHHHHHHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES-----------RLLKIISAYVMQDELLFPMLTVEETLMFS 69 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~-----------~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~ 69 (602)
++|+||||||||||+++|+|++++ .+|+|.++|+++.. ...++.++||+|++.+++.+||.||+.+.
T Consensus 32 ~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 109 (250)
T PRK11264 32 VAIIGPSGSGKTTLLRCINLLEQP--EAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG 109 (250)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHH
Confidence 489999999999999999999875 45999999998742 12345689999999999999999999875
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 007474 70 AECRLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFK 149 (602)
Q Consensus 70 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 149 (602)
..... .....+..++++++++.+||.+..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..
T Consensus 110 ~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 182 (250)
T PRK11264 110 PVIVK--GEPKEEATARARELLAKVGLAGKETSYPR-----RLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGE 182 (250)
T ss_pred HHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCChh-----hCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence 43211 22344556788999999999887776655 599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 150 VVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 150 i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+.+.|++++++|+|||+++|++. ++.+++|++++|++|++++.|++++
T Consensus 183 l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 230 (250)
T PRK11264 183 VLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQGRIVEQGPAKA 230 (250)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999888999999999987 6889999999999999999987654
No 85
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-38 Score=313.76 Aligned_cols=183 Identities=31% Similarity=0.494 Sum_probs=157.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc-cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR-LLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
++|+||||||||||+++|+|+.++. +|+|.++|+++... ..++.++|++|++.+++.+||+||+.+...... . .
T Consensus 27 ~~l~G~nGsGKSTLl~~l~gl~~~~--~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~-~ 101 (211)
T cd03298 27 TAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--K-L 101 (211)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccccccc--C-c
Confidence 4899999999999999999998754 59999999987532 234568999999999999999999987543211 1 1
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007474 80 KKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK 159 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~ 159 (602)
.++.+++++++++.+||.+..++.+. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 102 ~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 176 (211)
T cd03298 102 TAEDRQAIEVALARVGLAGLEKRLPG-----ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHA 176 (211)
T ss_pred cHHHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 23445678999999999887777665 5999999999999999999999999999999999999999999999986
Q ss_pred c-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecC
Q 007474 160 S-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSG 194 (602)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 194 (602)
+ |+|||+++|+++ ++.+++|++++|++|+++..|
T Consensus 177 ~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 177 ETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 4 899999999987 688999999999999998654
No 86
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-38 Score=313.45 Aligned_cols=181 Identities=36% Similarity=0.549 Sum_probs=157.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc-------ccccceEEEEccCCcCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES-------RLLKIISAYVMQDELLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~ 73 (602)
++|+||||||||||+++|+|++++. +|+|.++|.++.. ...++.++|++|++.+++.+|++||+.+.....
T Consensus 26 ~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~ 103 (214)
T cd03297 26 TGIFGASGAGKSTLLRCIAGLEKPD--GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK 103 (214)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC
Confidence 4899999999999999999998754 6999999998642 123456899999999999999999998764321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 007474 74 LPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKV 153 (602)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (602)
.....+++++++++.+|+.+..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.
T Consensus 104 -----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 173 (214)
T cd03297 104 -----RNREDRISVDELLDLLGLDHLLNRYPA-----QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE 173 (214)
T ss_pred -----CHHHHHHHHHHHHHHcCCHhHhhcCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 233455678999999999877776665 4999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecC
Q 007474 154 LGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSG 194 (602)
Q Consensus 154 l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 194 (602)
|++++++ |+|||+++|+++ ++.+++|++++|++|+++..|
T Consensus 174 l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 174 LKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999875 899999999987 588899999999999998765
No 87
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.8e-38 Score=336.80 Aligned_cols=185 Identities=31% Similarity=0.545 Sum_probs=162.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc-------cccceEEEEccCCcCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR-------LLKIISAYVMQDELLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~-------~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~ 73 (602)
++|+|||||||||||++|+|+.++. +|+|.++|+++... ..++.++|++|++.+++.+||+||+.|.....
T Consensus 26 ~~l~G~nGsGKSTLl~~iaGl~~p~--~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~ 103 (354)
T TIGR02142 26 TAIFGRSGSGKTTLIRLIAGLTRPD--EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA 103 (354)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc
Confidence 4899999999999999999998854 59999999987421 23566899999999999999999999865421
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 007474 74 LPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKV 153 (602)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (602)
...+.+++++++++.+||.+..++.+. .|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.
T Consensus 104 -----~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~ 173 (354)
T TIGR02142 104 -----RPSERRISFERVIELLGIGHLLGRLPG-----RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPY 173 (354)
T ss_pred -----ChhHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 223456678999999999988887765 4999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 154 LGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 154 l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
|++++++ |+|||++||+++ ++..++|++++|++|+++..|++++
T Consensus 174 L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 218 (354)
T TIGR02142 174 LERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAE 218 (354)
T ss_pred HHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHH
Confidence 9999875 899999999987 6889999999999999999998765
No 88
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-38 Score=325.25 Aligned_cols=186 Identities=27% Similarity=0.472 Sum_probs=162.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCC-cCCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDE-LLFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~-~l~~~lTV~e~l~f~~~~~~~~ 76 (602)
++|+||||||||||+++|+|+++|. +|+|.++|+++.. ...++.++||+|++ .+++..||+||+.|.....
T Consensus 36 ~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~--- 110 (279)
T PRK13650 36 LSIIGHNGSGKSTTVRLIDGLLEAE--SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK--- 110 (279)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---
Confidence 5899999999999999999998854 5999999998753 23456789999997 4677889999999865422
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
..++++..++++++++.+||++..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++
T Consensus 111 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 185 (279)
T PRK13650 111 GIPHEEMKERVNEALELVGMQDFKEREPA-----RLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKG 185 (279)
T ss_pred CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 34556667889999999999988777765 4999999999999999999999999999999999999999999999
Q ss_pred HHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 157 IAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 157 l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++ |+|||+++|+++ ++ ..||++++|++|+++..|++++
T Consensus 186 l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~ 226 (279)
T PRK13650 186 IRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRE 226 (279)
T ss_pred HHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence 9875 999999999987 46 6899999999999999998765
No 89
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=3.5e-38 Score=322.87 Aligned_cols=188 Identities=24% Similarity=0.422 Sum_probs=162.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc------cccceEEEEccCCcCCCCCCHHHHHHHHHHhcC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR------LLKIISAYVMQDELLFPMLTVEETLMFSAECRL 74 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~------~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~ 74 (602)
++|+|||||||||||++|+|+.+| .+|+|.++|+++... ..++.++|++|+..+++.+||.||+.+......
T Consensus 36 ~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~ 113 (269)
T PRK11831 36 TAIMGPSGIGKTTLLRLIGGQIAP--DHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT 113 (269)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc
Confidence 489999999999999999999875 459999999987531 134568999999999999999999988643211
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 007474 75 PRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVL 154 (602)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (602)
.....+.++++.++++.+||.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|
T Consensus 114 --~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l 186 (269)
T PRK11831 114 --QLPAPLLHSTVMMKLEAVGLRGAAKLMPSE-----LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLI 186 (269)
T ss_pred --CCCHHHHHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 123444566788999999999888777654 9999999999999999999999999999999999999999999
Q ss_pred HHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 155 GEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 155 ~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++++ |+|||+++|++. ++.+++|++++|++|++++.|++++
T Consensus 187 ~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (269)
T PRK11831 187 SELNSALGVTCVVVSHDVP-EVLSIADHAYIVADKKIVAHGSAQA 230 (269)
T ss_pred HHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEECCEEEEeCCHHH
Confidence 999865 899999999986 6889999999999999999987655
No 90
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-38 Score=335.40 Aligned_cols=181 Identities=32% Similarity=0.537 Sum_probs=160.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc-------ccccceEEEEccCCcCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES-------RLLKIISAYVMQDELLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~ 73 (602)
++|+|||||||||||++|+|++++. +|+|.++|+++.. ...++.++||+|+..++|++||+||+.|...
T Consensus 27 ~~l~G~nGsGKSTLl~~iaGl~~p~--~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-- 102 (352)
T PRK11144 27 TAIFGRSGAGKTSLINAISGLTRPQ--KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA-- 102 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh--
Confidence 4899999999999999999998754 5999999998642 1235678999999999999999999987532
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 007474 74 LPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKV 153 (602)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (602)
...+++++++++.+||.+..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.
T Consensus 103 -------~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~ 170 (352)
T PRK11144 103 -------KSMVAQFDKIVALLGIEPLLDRYPG-----SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPY 170 (352)
T ss_pred -------hhhHHHHHHHHHHcCCchhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 1234678999999999988877765 4999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 154 LGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 154 l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
|++++++ |+|+|++||+++ ++.+++|++++|++|+++..|++++
T Consensus 171 L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 215 (352)
T PRK11144 171 LERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKAFGPLEE 215 (352)
T ss_pred HHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEEecCHHH
Confidence 9999875 899999999987 6899999999999999999998766
No 91
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=3.6e-38 Score=311.56 Aligned_cols=180 Identities=31% Similarity=0.513 Sum_probs=155.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLP 75 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~ 75 (602)
++|+|||||||||||++|+|++++. +|+|.++|+++.. ...++.++|++|++.+++.+|++||+.+.....
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~-- 104 (213)
T cd03262 29 VVIIGPSGSGKSTLLRCINLLEEPD--SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKV-- 104 (213)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHh--
Confidence 4899999999999999999998754 5999999998742 234567899999999999999999998864311
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 007474 76 RSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLG 155 (602)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (602)
......+.+++++++++.+|+.+..++.+. .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~ 179 (213)
T cd03262 105 KGMSKAEAEERALELLEKVGLADKADAYPA-----QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMK 179 (213)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHhHhhhCcc-----ccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 123344556788999999999887777665 499999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCce
Q 007474 156 EIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQT 190 (602)
Q Consensus 156 ~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 190 (602)
+++++|+|||+++|+++ ++.+++|++++|++|++
T Consensus 180 ~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 180 DLAEEGMTMVVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99888999999999987 68899999999999974
No 92
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.2e-38 Score=311.56 Aligned_cols=178 Identities=31% Similarity=0.493 Sum_probs=152.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCc-CCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDEL-LFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~-l~~~lTV~e~l~f~~~~~~~~ 76 (602)
++|+||||||||||+++|+|++++ .+|+|.++|+++.. ...++.++|++|++. .++.+||+||+.+.....
T Consensus 30 ~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~--- 104 (211)
T cd03225 30 VLIVGPNGSGKSTLLRLLNGLLGP--TSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL--- 104 (211)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHc---
Confidence 489999999999999999999875 46999999998743 234566899999974 466789999998865432
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
.....+.+++++++++.+||.+..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus 105 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~ 179 (211)
T cd03225 105 GLPEEEIEERVEEALELVGLEGLRDRSPF-----TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKK 179 (211)
T ss_pred CCCHHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 22344556678999999999877777665 4999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCc
Q 007474 157 IAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQ 189 (602)
Q Consensus 157 l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 189 (602)
++++|+|||+++|++. ++.++||++++|++|+
T Consensus 180 ~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 180 LKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred HHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 9888999999999987 6888999999999885
No 93
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-38 Score=328.25 Aligned_cols=186 Identities=27% Similarity=0.470 Sum_probs=159.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc-------------------ccccceEEEEccCC--cCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES-------------------RLLKIISAYVMQDE--LLFPM 59 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~-------------------~~~~~~~~yv~Q~~--~l~~~ 59 (602)
++|+|+||||||||+++|+|++++. +|+|.++|+++.. ...++.++||+|++ .+++
T Consensus 55 ~~I~G~nGsGKSTLl~~L~Gl~~p~--~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~- 131 (320)
T PRK13631 55 YFIIGNSGSGKSTLVTHFNGLIKSK--YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK- 131 (320)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhcccc-
Confidence 5899999999999999999998854 5999999987642 13456799999986 4665
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCC
Q 007474 60 LTVEETLMFSAECRLPRSVSKKRKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEP 138 (602)
Q Consensus 60 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEP 138 (602)
.||+||+.|..... ..+..+..++++++++.+||. +..++.+. .||||||||++||++|+.+|++|+||||
T Consensus 132 ~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~LSgGqkqRvaiAraL~~~p~iLLLDEP 203 (320)
T PRK13631 132 DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYLERSPF-----GLSGGQKRRVAIAGILAIQPEILIFDEP 203 (320)
T ss_pred chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHhcCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 49999998865321 234556667899999999996 45655544 5999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 139 TSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 139 tsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
|+|||+.++..+.+.|++++++|+|||+++|+++ ++.++||++++|++|+++..|++++
T Consensus 204 tsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~adri~vl~~G~i~~~g~~~~ 262 (320)
T PRK13631 204 TAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDKGKILKTGTPYE 262 (320)
T ss_pred ccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999888999999999987 5889999999999999999998765
No 94
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-39 Score=315.12 Aligned_cols=181 Identities=31% Similarity=0.531 Sum_probs=163.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc-------ccccceEEEEccCCcCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES-------RLLKIISAYVMQDELLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~ 73 (602)
+||-|+||||||||+|+|+|+.+|+ +|.|.+||+.+.+ ...++++|||+||-.+||++||+.||.|+...
T Consensus 27 TAlFG~SGsGKTslin~IaGL~rPd--eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~- 103 (352)
T COG4148 27 TALFGPSGSGKTSLINMIAGLTRPD--EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWK- 103 (352)
T ss_pred EEEecCCCCChhhHHHHHhccCCcc--ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhcc-
Confidence 5899999999999999999999865 5999999987632 23467799999999999999999999997542
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 007474 74 LPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKV 153 (602)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (602)
......+++++.||++|..+++... |||||||||+|+|||+++|++|++|||.+.||-.-+.+++-.
T Consensus 104 --------~~~~~fd~iv~lLGI~hLL~R~P~~-----LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eilpy 170 (352)
T COG4148 104 --------SMRAQFDQLVALLGIEHLLDRYPGT-----LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPY 170 (352)
T ss_pred --------cchHhHHHHHHHhCcHHHHhhCCCc-----cCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHH
Confidence 1445788999999999999888765 999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 154 LGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 154 l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
|++|+++ +..|+.++|.+. |+.+++|+|++|++|++..+|+.++
T Consensus 171 lERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~GkV~A~g~~e~ 215 (352)
T COG4148 171 LERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGPLEE 215 (352)
T ss_pred HHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecCCeEEecCcHHH
Confidence 9999986 677999999987 8999999999999999999998766
No 95
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-38 Score=317.45 Aligned_cols=186 Identities=28% Similarity=0.463 Sum_probs=172.1
Q ss_pred EEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc-------ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcC
Q 007474 2 AILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES-------RLLKIISAYVMQDELLFPMLTVEETLMFSAECRL 74 (602)
Q Consensus 2 ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~ 74 (602)
.|||-||||||||+++|.++..|+ .|+|+++|+++.+ ...++.++.|+|...|+|+.||.||..|+.+.+
T Consensus 58 ViMGLSGSGKSTLvR~~NrLiept--~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~- 134 (386)
T COG4175 58 VIMGLSGSGKSTLVRLLNRLIEPT--RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ- 134 (386)
T ss_pred EEEecCCCCHHHHHHHHhccCCCC--CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec-
Confidence 699999999999999999999864 5999999998743 123566899999999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 007474 75 PRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVL 154 (602)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (602)
+++++++++++.++|+.+||+..++.++.+ |||||||||.+||||+++|+||++|||+|.|||--+.++.+.|
T Consensus 135 --Gv~~~er~~~a~~~l~~VgL~~~~~~yp~e-----LSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeL 207 (386)
T COG4175 135 --GVPKAEREERALEALELVGLEGYADKYPNE-----LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDEL 207 (386)
T ss_pred --CCCHHHHHHHHHHHHHHcCchhhhhcCccc-----ccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHH
Confidence 688999999999999999999999888764 9999999999999999999999999999999999999999999
Q ss_pred HHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 155 GEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 155 ~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+|.++ ++|||++|||.+ |.+++-|||.+|++|++|..|+|++
T Consensus 208 l~Lq~~l~KTIvFitHDLd-EAlriG~rIaimkdG~ivQ~Gtp~e 251 (386)
T COG4175 208 LELQAKLKKTIVFITHDLD-EALRIGDRIAIMKDGEIVQVGTPEE 251 (386)
T ss_pred HHHHHHhCCeEEEEecCHH-HHHhccceEEEecCCeEEEeCCHHH
Confidence 999764 899999999997 7999999999999999999999988
No 96
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=5.1e-38 Score=312.62 Aligned_cols=180 Identities=30% Similarity=0.433 Sum_probs=156.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc------cccceEEEEccCCcCCCCCCHHHHHHHHHHhcC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR------LLKIISAYVMQDELLFPMLTVEETLMFSAECRL 74 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~------~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~ 74 (602)
++|+||||||||||+++|+|+.++ .+|+|.++|+++... ..++.++|++|++.+++.+||+||+.+....+
T Consensus 31 ~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~- 107 (222)
T PRK10908 31 AFLTGHSGAGKSTLLKLICGIERP--SAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA- 107 (222)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc-
Confidence 489999999999999999999875 469999999987431 13567899999998889999999998865432
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 007474 75 PRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVL 154 (602)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (602)
.....+.+++++++++.+++.+..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|
T Consensus 108 --~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 180 (222)
T PRK10908 108 --GASGDDIRRRVSAALDKVGLLDKAKNFPI-----QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLF 180 (222)
T ss_pred --CCCHHHHHHHHHHHHHHcCChhhhhCCch-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 23444556678899999999887776665 49999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCcee
Q 007474 155 GEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTV 191 (602)
Q Consensus 155 ~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 191 (602)
++++++|.|||+++|+++ ++.+.+|++++|++|+++
T Consensus 181 ~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 181 EEFNRVGVTVLMATHDIG-LISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEc
Confidence 999878999999999987 588899999999999975
No 97
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=4.6e-38 Score=312.62 Aligned_cols=179 Identities=29% Similarity=0.452 Sum_probs=153.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc---c---cc-ceEEEEccCCcCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR---L---LK-IISAYVMQDELLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~---~---~~-~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~ 73 (602)
++|+|||||||||||++|+|+.++. +|+|.++|+++... . .+ +.++|++|++.+++.+||+||+.+....+
T Consensus 34 ~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~ 111 (221)
T TIGR02211 34 VAIVGSSGSGKSTLLHLLGGLDNPT--SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG 111 (221)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc
Confidence 4899999999999999999998754 69999999987431 1 12 56899999999999999999998865432
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 007474 74 LPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKV 153 (602)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (602)
.....+..+++.++++.+||.+..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.
T Consensus 112 ---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~ 183 (221)
T TIGR02211 112 ---KKSVKEAKERAYEMLEKVGLEHRINHRPS-----ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDL 183 (221)
T ss_pred ---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHH
Confidence 22334456678999999999887777665 4999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCcee
Q 007474 154 LGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTV 191 (602)
Q Consensus 154 l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 191 (602)
|++++++ |+|||+++|+++ ++ +.+|++++|++|+++
T Consensus 184 l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 184 MLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 9999864 899999999986 45 457999999999875
No 98
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.7e-38 Score=304.31 Aligned_cols=189 Identities=31% Similarity=0.525 Sum_probs=175.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++++|||||||||++++|.|++.++ +|+|.++|.+++.. .+.++||+|.+..|+|.+||.|.|.|.++++ ++++
T Consensus 31 ~GllG~NGAGKTTtfRmILglle~~--~G~I~~~g~~~~~~-~~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~ 104 (300)
T COG4152 31 FGLLGPNGAGKTTTFRMILGLLEPT--EGEITWNGGPLSQE-IKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPK 104 (300)
T ss_pred EEeecCCCCCccchHHHHhccCCcc--CceEEEcCcchhhh-hhhhcccChhhhccCccCcHHHHHHHHHHhc---CCcH
Confidence 4799999999999999999999854 59999999998653 4566899999999999999999999999987 7889
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKS 160 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~ 160 (602)
++.+++++.+|+++++......+|.+ ||.|++|++.+-.+++++|++++||||+|||||.+.+.+.+.+.+++++
T Consensus 105 ~e~~~~~~~wLer~~i~~~~~~kIk~-----LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~ 179 (300)
T COG4152 105 AEIQKKLQAWLERLEIVGKKTKKIKE-----LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEE 179 (300)
T ss_pred HHHHHHHHHHHHhccccccccchHHH-----hhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhc
Confidence 99999999999999999988887765 9999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccchHHH
Q 007474 161 GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPATDFSL 202 (602)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 202 (602)
|.|||+++|.++ .+.++||++++|++|+.|.+|+..+ +..
T Consensus 180 GatIifSsH~Me-~vEeLCD~llmL~kG~~V~~G~v~~-ir~ 219 (300)
T COG4152 180 GATIIFSSHRME-HVEELCDRLLMLKKGQTVLYGTVED-IRR 219 (300)
T ss_pred CCEEEEecchHH-HHHHHhhhhheecCCceEEeccHHH-HHH
Confidence 999999999998 6999999999999999999999876 544
No 99
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-38 Score=317.63 Aligned_cols=188 Identities=25% Similarity=0.477 Sum_probs=162.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc----cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR----LLKIISAYVMQDELLFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~----~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~ 76 (602)
++|+||||||||||+++|+|+.++. +|+|.++|.++... ..++.++|++|++.+++.+||.||+.+......
T Consensus 32 ~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-- 107 (241)
T PRK10895 32 VGLLGPNGAGKTTTFYMVVGIVPRD--AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD-- 107 (241)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--
Confidence 4899999999999999999998754 59999999987531 134568999999999999999999987643221
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
....++.+++++++++.+|+.+..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus 108 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (241)
T PRK10895 108 DLSAEQREDRANELMEEFHIEHLRDSMGQ-----SLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEH 182 (241)
T ss_pred ccCHHHHHHHHHHHHHHcCCHHHhhcchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 22344556788999999999877666654 5999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 157 IAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 157 l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++|+|||+++|++. ++.+.+|++++|++|++++.|++++
T Consensus 183 ~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 223 (241)
T PRK10895 183 LRDSGLGVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTPTE 223 (241)
T ss_pred HHhcCCEEEEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCHHH
Confidence 9888999999999986 6889999999999999999887665
No 100
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=4.5e-38 Score=334.11 Aligned_cols=187 Identities=28% Similarity=0.457 Sum_probs=164.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEe----ccc---cc---c-cceEEEEccCCcCCCCCCHHHHHHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAV----LES---RL---L-KIISAYVMQDELLFPMLTVEETLMFS 69 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~----~~~---~~---~-~~~~~yv~Q~~~l~~~lTV~e~l~f~ 69 (602)
++|+||||||||||+++|+|+++|. +|+|.++|++ +.. .. . ++.++||+|+..++|.+||+||+.+.
T Consensus 53 ~~I~G~nGsGKSTLlr~L~Gl~~p~--~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~ 130 (382)
T TIGR03415 53 CVLMGLSGSGKSSLLRAVNGLNPVS--RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFG 130 (382)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCC--CcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHH
Confidence 4899999999999999999998854 5999999973 321 11 1 24699999999999999999999987
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 007474 70 AECRLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFK 149 (602)
Q Consensus 70 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 149 (602)
...+ ..++.+.+++++++++.+||.+..++.+++ |||||||||+|||+|+.+|++|+|||||+|||+.++.+
T Consensus 131 ~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~~~-----LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~ 202 (382)
T TIGR03415 131 LEMQ---GMPEAERRKRVDEQLELVGLAQWADKKPGE-----LSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQ 202 (382)
T ss_pred HHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHH
Confidence 6543 345566778899999999999888877764 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 150 VVKVLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 150 i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+.+.|++++++ |+|||++||+++ ++.+++||+++|++|+++..|++++
T Consensus 203 l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~G~iv~~g~~~e 251 (382)
T TIGR03415 203 LQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEE 251 (382)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999875 999999999987 6899999999999999999998876
No 101
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=5.2e-38 Score=329.68 Aligned_cols=189 Identities=27% Similarity=0.438 Sum_probs=163.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc------cccceEEEEccCC--cCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR------LLKIISAYVMQDE--LLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~------~~~~~~~yv~Q~~--~l~~~lTV~e~l~f~~~~ 72 (602)
++|+|+||||||||+++|+|++++ .+|+|.++|+++... ..++.++||+|++ .++|.+||.||+.+....
T Consensus 50 ~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~ 127 (331)
T PRK15079 50 LGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRT 127 (331)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHH
Confidence 589999999999999999999885 469999999987531 2356799999997 689999999999886543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVV 151 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (602)
..+ ..++++.++++.++++.+||. +..++.+. .|||||||||+||+||+.+|++|++||||+|||+.++.+++
T Consensus 128 ~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~-----~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~ 201 (331)
T PRK15079 128 YHP-KLSRQEVKDRVKAMMLKVGLLPNLINRYPH-----EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVV 201 (331)
T ss_pred hcc-CCCHHHHHHHHHHHHHHcCCChHHhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence 211 245667778899999999994 45565554 59999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 152 KVLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 152 ~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+.|+++.++ |.|+|++||++. .+.+++|++++|++|++++.|++++
T Consensus 202 ~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~G~ive~g~~~~ 248 (331)
T PRK15079 202 NLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYLGHAVELGTYDE 248 (331)
T ss_pred HHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999875 999999999987 5888999999999999999998765
No 102
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=6.4e-38 Score=312.93 Aligned_cols=184 Identities=28% Similarity=0.463 Sum_probs=153.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc------ccccceEEEEccCC--cCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES------RLLKIISAYVMQDE--LLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~------~~~~~~~~yv~Q~~--~l~~~lTV~e~l~f~~~~ 72 (602)
++|+|||||||||||++|+|++++. +|+|.++|+++.. ...++.++|++|++ .+++.+||+||+.+....
T Consensus 34 ~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~ 111 (228)
T cd03257 34 LGLVGESGSGKSTLARAILGLLKPT--SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRI 111 (228)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHh
Confidence 5899999999999999999998754 5999999998753 13456799999998 567889999999886543
Q ss_pred cCCCCCCHHHHHHH-HHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 73 RLPRSVSKKRKRER-VEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 73 ~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
..+ ....+..++ ++++++.+++. +..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+
T Consensus 112 ~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l 184 (228)
T cd03257 112 HGK--LSKKEARKEAVLLLLVGVGLPEEVLNRYPH-----ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQI 184 (228)
T ss_pred ccC--CcHHHHHHHHHHHHHHHCCCChhHhhCCch-----hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHH
Confidence 311 112222233 36899999995 55666655 4999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecC
Q 007474 151 VKVLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSG 194 (602)
Q Consensus 151 ~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 194 (602)
.+.|++++++ |+|||+++|+++ ++.+++|++++|++|+++..|
T Consensus 185 ~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 185 LDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeCCEEEecC
Confidence 9999999876 899999999987 578899999999999998654
No 103
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-38 Score=324.53 Aligned_cols=186 Identities=26% Similarity=0.448 Sum_probs=160.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc-------ccccceEEEEccCC--cCCCCCCHHHHHHHHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES-------RLLKIISAYVMQDE--LLFPMLTVEETLMFSAE 71 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~yv~Q~~--~l~~~lTV~e~l~f~~~ 71 (602)
++|+|||||||||||++|+|+++|. +|+|.++|+++.. ...++.++|++|++ .++ .+||.||+.+...
T Consensus 36 ~~iiG~NGaGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~ 112 (287)
T PRK13641 36 VALVGHTGSGKSTLMQHFNALLKPS--SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPK 112 (287)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHH
Confidence 5899999999999999999998864 5999999998742 12345689999996 345 5799999988654
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 72 CRLPRSVSKKRKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 72 ~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
.. ...+++..++++++++.+||+ +..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+
T Consensus 113 ~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~-----LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l 184 (287)
T PRK13641 113 NF---GFSEDEAKEKALKWLKKVGLSEDLISKSPFE-----LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEM 184 (287)
T ss_pred Hc---CCCHHHHHHHHHHHHHHcCCChhHhhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH
Confidence 32 234556667899999999997 567776664 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|++++++|.|||+++|+++ ++.++||++++|++|+++..|++++
T Consensus 185 ~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 185 MQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999878999999999987 6889999999999999999998765
No 104
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=6.8e-38 Score=316.83 Aligned_cols=188 Identities=26% Similarity=0.403 Sum_probs=160.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCC---ceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKES---LKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~---~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+||||||||||+++|+|+.+|.+ .+|+|.++|+++.. ...++.++|++|+..+++ +||.||+.+....
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~ 108 (247)
T TIGR00972 30 TALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRL 108 (247)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHh
Confidence 48999999999999999999987541 16999999998753 123567899999998888 9999999986543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLR----SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAF 148 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (602)
+. ..+..+.+++++++++.+||. +..++.++ .||||||||++||++|+.+|++++|||||+|||+.++.
T Consensus 109 ~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 181 (247)
T TIGR00972 109 HG--IKDKKELDEIVEESLKKAALWDEVKDRLHDSAL-----GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATG 181 (247)
T ss_pred cC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 21 123455567889999999997 55555554 59999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 149 KVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 149 ~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.+.|+++++ ++|||+++|+++ ++.+++|++++|++|+++..|++++
T Consensus 182 ~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 229 (247)
T TIGR00972 182 KIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYDGELVEYGPTEQ 229 (247)
T ss_pred HHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999987 489999999987 6889999999999999999987665
No 105
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=4.1e-38 Score=311.29 Aligned_cols=183 Identities=28% Similarity=0.492 Sum_probs=152.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCC--CCCCHHHHHHHHHHhcCC-CC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLF--PMLTVEETLMFSAECRLP-RS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~--~~lTV~e~l~f~~~~~~~-~~ 77 (602)
++|+||||||||||+++|+|+.+|. +|+|.++|+++. ..++.++|++|++.+. ..+||+||+.+....... ..
T Consensus 28 ~~l~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~ 103 (213)
T cd03235 28 LAIVGPNGAGKSTLLKAILGLLKPT--SGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFR 103 (213)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCC--CCEEEECCccHH--HHHhheEEeccccccccCCCCcHHHHHHhcccccccccc
Confidence 5899999999999999999998754 599999998764 2456689999998763 347999999875432110 00
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEI 157 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (602)
..+++.+++++++++.+|+.+..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++
T Consensus 104 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 178 (213)
T cd03235 104 RLSKADKAKVDEALERVGLSELADRQIG-----ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL 178 (213)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 1123445678999999999887777665 49999999999999999999999999999999999999999999999
Q ss_pred HhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecC
Q 007474 158 AKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSG 194 (602)
Q Consensus 158 ~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 194 (602)
+++|+|||+++|+++ ++.+++|++++|++| +++.|
T Consensus 179 ~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 179 RREGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HhcCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 878999999999987 688899999999875 66554
No 106
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-38 Score=317.11 Aligned_cols=183 Identities=30% Similarity=0.497 Sum_probs=158.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+|||||||||||++|+|+.++. +|+|.++|+++.. ....++|++|++.+++.+||.||+.+....+ ....
T Consensus 30 ~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~ 102 (255)
T PRK11248 30 LVVLGPSGCGKTTLLNLIAGFVPYQ--HGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEK 102 (255)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEECCC--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCH
Confidence 5899999999999999999998754 5999999998753 2335799999999999999999998765432 2344
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK- 159 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~- 159 (602)
.+..++++++++.+||.+..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 103 ~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 177 (255)
T PRK11248 103 MQRLEIAHQMLKKVGLEGAEKRYIW-----QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE 177 (255)
T ss_pred HHHHHHHHHHHHHcCChhHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 5556789999999999887776665 4999999999999999999999999999999999999999999999865
Q ss_pred cCcEEEEEEcCCcHHHHHHhhHHhhhc--CCceeecCCc
Q 007474 160 SGSVVIMSIHQPSYRIFSLLNRLIFLS--HGQTVYSGTP 196 (602)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~~L~--~G~iv~~G~~ 196 (602)
+|+|||+++|+++ ++.++||++++|+ +|+++..++.
T Consensus 178 ~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 178 TGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred cCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 5899999999987 6889999999998 5999887754
No 107
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=8.4e-38 Score=318.00 Aligned_cols=188 Identities=29% Similarity=0.488 Sum_probs=160.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc----------------ccccceEEEEccCCcCCCCCCHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES----------------RLLKIISAYVMQDELLFPMLTVEE 64 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~----------------~~~~~~~~yv~Q~~~l~~~lTV~e 64 (602)
++|+||||||||||+++|+|++++. +|+|.++|+++.. ...++.++|++|++.+++.+||+|
T Consensus 34 ~~l~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~e 111 (257)
T PRK10619 34 ISIIGSSGSGKSTFLRCINFLEKPS--EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE 111 (257)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHH
Confidence 5899999999999999999998754 5999999987642 123456899999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-ccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 007474 65 TLMFSAECRLPRSVSKKRKRERVEALIDQLGLRSAA-KTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLD 143 (602)
Q Consensus 65 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD 143 (602)
|+.+...... ...+.+.++++.++++.+|+.+.. ++.+ +.||||||||++||++|+.+|++++|||||+|||
T Consensus 112 nl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 184 (257)
T PRK10619 112 NVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGKYP-----VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALD 184 (257)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 9987542111 233455667889999999998753 5444 4599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 144 STSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 144 ~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+.++..+.+.|++++++|+|||+++|+++ ++.++|||+++|++|++++.|++++
T Consensus 185 ~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 238 (257)
T PRK10619 185 PELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGAPEQ 238 (257)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999888999999999987 5888999999999999999987655
No 108
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=9.1e-38 Score=308.89 Aligned_cols=184 Identities=26% Similarity=0.402 Sum_probs=158.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc-ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES-RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~-~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
++|+||||||||||+++|+|+.++. +|+|.++|+++.. ...++.++||+|++.+++.+|+.||+.+...... ..
T Consensus 27 ~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~---~~ 101 (213)
T TIGR01277 27 VAIMGPSGAGKSTLLNLIAGFIEPA--SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL---KL 101 (213)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccC---Cc
Confidence 4899999999999999999998854 5999999998753 2345668999999999999999999987543211 11
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007474 80 KKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK 159 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~ 159 (602)
+.+.+++++++++.+||.+..++.+. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 102 ~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~ 176 (213)
T TIGR01277 102 NAEQQEKVVDAAQQVGIADYLDRLPE-----QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCS 176 (213)
T ss_pred cHHHHHHHHHHHHHcCcHHHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 22345678899999999887777665 4999999999999999999999999999999999999999999999986
Q ss_pred c-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCC
Q 007474 160 S-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGT 195 (602)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 195 (602)
+ |+|||+++|+++ ++.+++|++++|++|+++..|.
T Consensus 177 ~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 177 ERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 5 899999999987 5788999999999999998874
No 109
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1e-37 Score=313.48 Aligned_cols=186 Identities=33% Similarity=0.511 Sum_probs=159.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc--cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR--LLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~--~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
++|+||||||||||+++|+|+.+|. +|+|.++|.++... ..++.++|++|++.+++.+||+||+.+....+ ..
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~ 104 (236)
T TIGR03864 30 VALLGPNGAGKSTLFSLLTRLYVAQ--EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GL 104 (236)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCCC--ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CC
Confidence 4899999999999999999998754 59999999987431 22346899999998889999999998765432 23
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
...+..++++++++.+||.+..++.+++ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 105 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 179 (236)
T TIGR03864 105 SRAEARERIAALLARLGLAERADDKVRE-----LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALC 179 (236)
T ss_pred CHHHHHHHHHHHHHHcCChhhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHH
Confidence 3445567889999999998877777664 99999999999999999999999999999999999999999999998
Q ss_pred h-cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 159 K-SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 159 ~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+ +|+|||+++|+++ ++. .+|++++|++|+++..|++++
T Consensus 180 ~~~~~tiii~sH~~~-~~~-~~d~i~~l~~G~i~~~~~~~~ 218 (236)
T TIGR03864 180 RDQGLSVLWATHLVD-EIE-ADDRLVVLHRGRVLADGAAAE 218 (236)
T ss_pred HhCCCEEEEEecChh-hHh-hCCEEEEEeCCeEEEeCCHHH
Confidence 5 5899999999997 464 599999999999999887654
No 110
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-38 Score=304.22 Aligned_cols=186 Identities=29% Similarity=0.512 Sum_probs=160.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc----cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR----LLKIISAYVMQDELLFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~----~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~ 76 (602)
++|+|+||||||||||+|+|+.++. +|+|.++|++++.. ..+..++||||...+||.|||+|||..++..+..
T Consensus 32 v~llG~NGaGKTTlLkti~Gl~~~~--~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~- 108 (237)
T COG0410 32 VALLGRNGAGKTTLLKTIMGLVRPR--SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD- 108 (237)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc-
Confidence 5899999999999999999998854 69999999999752 3456789999999999999999999987654321
Q ss_pred CCCHHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLG-LRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLG 155 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (602)
+...+..++++.+.|- |.+.++++-|+ |||||||.++|||||+.+|++|+|||||.||-|.-..+|.+.|+
T Consensus 109 ---~~~~~~~~e~v~~lFP~Lker~~~~aG~-----LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~ 180 (237)
T COG0410 109 ---KEAQERDLEEVYELFPRLKERRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIK 180 (237)
T ss_pred ---cccccccHHHHHHHChhHHHHhcCcccC-----CChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHH
Confidence 1222223788888885 77788888886 99999999999999999999999999999999999999999999
Q ss_pred HHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 156 EIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 156 ~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+++++ |.||+++-++.. ...+++||.++|.+|+++++|+.++
T Consensus 181 ~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~Griv~~G~~~e 223 (237)
T COG0410 181 ELRKEGGMTILLVEQNAR-FALEIADRGYVLENGRIVLSGTAAE 223 (237)
T ss_pred HHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeCCEEEEecCHHH
Confidence 99976 668888877765 6899999999999999999999876
No 111
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-37 Score=321.58 Aligned_cols=187 Identities=27% Similarity=0.444 Sum_probs=161.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc-----ccccceEEEEccCCc-CCCCCCHHHHHHHHHHhcC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES-----RLLKIISAYVMQDEL-LFPMLTVEETLMFSAECRL 74 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~-l~~~lTV~e~l~f~~~~~~ 74 (602)
++|+||||||||||+++|+|++++ .+|+|.++|+++.. ...++.++|++|++. .+...||+||+.+.....
T Consensus 35 ~~i~G~nGaGKSTLl~~i~Gl~~p--~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~- 111 (283)
T PRK13636 35 TAILGGNGAGKSTLFQNLNGILKP--SSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL- 111 (283)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc-
Confidence 589999999999999999999885 46999999998731 234567999999963 334579999998865422
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 007474 75 PRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVL 154 (602)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (602)
..+..+.+++++++++.+||.+..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|
T Consensus 112 --~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l 184 (283)
T PRK13636 112 --KLPEDEVRKRVDNALKRTGIEHLKDKPTH-----CLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLL 184 (283)
T ss_pred --CCCHHHHHHHHHHHHHHCCChhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 24555666789999999999988777765 49999999999999999999999999999999999999999999
Q ss_pred HHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 155 GEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 155 ~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++++ |+|||+++|+++ ++.++|||+++|++|++++.|++++
T Consensus 185 ~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~ 228 (283)
T PRK13636 185 VEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKE 228 (283)
T ss_pred HHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999875 899999999987 5788999999999999999998766
No 112
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-38 Score=315.43 Aligned_cols=187 Identities=29% Similarity=0.489 Sum_probs=160.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---------ccccceEEEEccCCcCCCCCCHHHHHHHH-H
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---------RLLKIISAYVMQDELLFPMLTVEETLMFS-A 70 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---------~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~-~ 70 (602)
++|+||||||||||+++|+|+.++ .+|+|.++|+++.. ...++.++|++|++.+++.+||.||+.+. .
T Consensus 31 ~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~ 108 (242)
T PRK11124 31 LVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPC 108 (242)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHH
Confidence 489999999999999999999875 45999999997621 12345689999999999999999999753 2
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 71 ECRLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 71 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
... .....+..++++++++.+|+.+..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+
T Consensus 109 ~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l 180 (242)
T PRK11124 109 RVL---GLSKDQALARAEKLLERLRLKPYADRFPL-----HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQI 180 (242)
T ss_pred HHc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHH
Confidence 221 22344456788999999999887777665 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|++++++|+|+|+++|++. ++.+++|++++|++|++++.|++++
T Consensus 181 ~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 181 VSIIRELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999878999999999987 5788999999999999999887654
No 113
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-37 Score=290.09 Aligned_cols=184 Identities=32% Similarity=0.528 Sum_probs=166.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++++||||||||||||+++|+.+|. .|+|.+||++++..... .|.|+|++.++|.+||.||+.|+.+++ .+++
T Consensus 34 vv~lGpSGcGKTTLLnl~AGf~~P~--~G~i~l~~r~i~gPgae--rgvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k 106 (259)
T COG4525 34 VVVLGPSGCGKTTLLNLIAGFVTPS--RGSIQLNGRRIEGPGAE--RGVVFQNEALLPWLNVIDNVAFGLQLR---GIEK 106 (259)
T ss_pred EEEEcCCCccHHHHHHHHhcCcCcc--cceEEECCEeccCCCcc--ceeEeccCccchhhHHHHHHHHHHHhc---CCCH
Confidence 4789999999999999999999864 59999999999754333 389999999999999999999999886 6889
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK- 159 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~- 159 (602)
.++.+++.+.+..+||++..++.+- +|||||||||.|||||+.+|++|+||||++.||..+++++.++|-++.+
T Consensus 107 ~~R~~~a~q~l~~VgL~~~~~~~i~-----qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~ 181 (259)
T COG4525 107 AQRREIAHQMLALVGLEGAEHKYIW-----QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQE 181 (259)
T ss_pred HHHHHHHHHHHHHhCcccccccceE-----eecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998877765 5999999999999999999999999999999999999999999999876
Q ss_pred cCcEEEEEEcCCcHHHHHHhhHHhhhcC--CceeecCCcc
Q 007474 160 SGSVVIMSIHQPSYRIFSLLNRLIFLSH--GQTVYSGTPA 197 (602)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~ 197 (602)
.|+.++++||+.+ |..-+++|+++|+. |+++..-+++
T Consensus 182 tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 182 TGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred hCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCC
Confidence 6999999999997 68889999999985 7888766554
No 114
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-38 Score=323.57 Aligned_cols=186 Identities=26% Similarity=0.426 Sum_probs=160.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc-------ccccceEEEEccCC--cCCCCCCHHHHHHHHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES-------RLLKIISAYVMQDE--LLFPMLTVEETLMFSAE 71 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~yv~Q~~--~l~~~lTV~e~l~f~~~ 71 (602)
++|+||||||||||+++|+|++++. +|+|.++|+++.. ...++.+|||+|++ .+++ .||.||+.|...
T Consensus 36 ~~i~G~nGsGKSTLl~~L~Gl~~p~--~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~ 112 (286)
T PRK13646 36 YAIVGQTGSGKSTLIQNINALLKPT--TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPK 112 (286)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHH
Confidence 5899999999999999999998864 5999999998743 13456799999985 4555 599999998654
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 72 CRLPRSVSKKRKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 72 ~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
.. ..++.+..++++++++.+||. +..++.+. .||||||||++||++|+.+|++|+|||||+|||+.++..+
T Consensus 113 ~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l 184 (286)
T PRK13646 113 NF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSPF-----QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQV 184 (286)
T ss_pred Hc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcc-----cCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 22 345566677899999999996 56666554 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAK-SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|+++++ .|+|||+++|+++ ++.+++|++++|++|++++.|++.+
T Consensus 185 ~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~~~g~~~~ 232 (286)
T PRK13646 185 MRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSIVSQTSPKE 232 (286)
T ss_pred HHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999986 4899999999987 5889999999999999999998765
No 115
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-38 Score=313.38 Aligned_cols=187 Identities=27% Similarity=0.472 Sum_probs=160.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc-cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR-LLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
++|+||||||||||+++|+|+.++ .+|+|.++|+++... ..++.++|++|++.+++.+|+.||+.+...... . .
T Consensus 28 ~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~-~ 102 (232)
T PRK10771 28 VAILGPSGAGKSTLLNLIAGFLTP--ASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--K-L 102 (232)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccccccc--C-C
Confidence 489999999999999999999875 459999999987532 124568999999999999999999987532110 1 1
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007474 80 KKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK 159 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~ 159 (602)
.+..+++++++++.+||++..++.+.. ||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 103 ~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~ 177 (232)
T PRK10771 103 NAAQREKLHAIARQMGIEDLLARLPGQ-----LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQ 177 (232)
T ss_pred CHHHHHHHHHHHHHcCcHHHHhCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 234466799999999999888877764 999999999999999999999999999999999999999999999976
Q ss_pred c-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 160 S-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+ |+|||+++|++. ++.+++|++++|++|++++.|++++
T Consensus 178 ~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~ 216 (232)
T PRK10771 178 ERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDE 216 (232)
T ss_pred hcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 4 899999999987 6889999999999999999987654
No 116
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-37 Score=320.69 Aligned_cols=186 Identities=30% Similarity=0.443 Sum_probs=161.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc---cccceEEEEccCC-cCCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR---LLKIISAYVMQDE-LLFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~---~~~~~~~yv~Q~~-~l~~~lTV~e~l~f~~~~~~~~ 76 (602)
++|+||||||||||+++|+|+.+|. +|+|.++|+++... ..++.++|++|++ .+++..||.||+.+.....
T Consensus 36 ~~i~G~nGaGKSTLl~~i~G~~~p~--~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~--- 110 (279)
T PRK13635 36 VAIVGHNGSGKSTLAKLLNGLLLPE--AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI--- 110 (279)
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCC--CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---
Confidence 4899999999999999999998864 59999999987532 3356789999997 4677789999998865432
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
..+.++.+++++++++.+||.+..++.++. ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus 111 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 185 (279)
T PRK13635 111 GVPREEMVERVDQALRQVGMEDFLNREPHR-----LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQ 185 (279)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 234556667899999999999888877764 999999999999999999999999999999999999999999999
Q ss_pred HHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 157 IAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 157 l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++ |+|||+++|+++ ++. .+|++++|++|++++.|++++
T Consensus 186 l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~ 226 (279)
T PRK13635 186 LKEQKGITVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEE 226 (279)
T ss_pred HHHcCCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHH
Confidence 9876 899999999987 454 599999999999999998765
No 117
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-37 Score=319.88 Aligned_cols=186 Identities=26% Similarity=0.417 Sum_probs=158.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc-------ccccceEEEEccCC--cCCCCCCHHHHHHHHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES-------RLLKIISAYVMQDE--LLFPMLTVEETLMFSAE 71 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~yv~Q~~--~l~~~lTV~e~l~f~~~ 71 (602)
++|+|||||||||||++|+|+++| .+|+|.++|+++.. ...++.++|++|++ .+++ .||+||+.+...
T Consensus 36 ~~l~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~ 112 (280)
T PRK13649 36 TAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQ 112 (280)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHH
Confidence 489999999999999999999875 46999999998743 12456689999996 4555 699999987654
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 72 CRLPRSVSKKRKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 72 ~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
.. ....++.+++++++++.+||. +..++.++ .||||||||++||++|+.+|++|||||||+|||+.++..+
T Consensus 113 ~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 184 (280)
T PRK13649 113 NF---GVSQEEAEALAREKLALVGISESLFEKNPF-----ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKEL 184 (280)
T ss_pred Hc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 32 233455567789999999997 35566554 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|++++++|+|||+++|+++ ++.+++|++++|++|+++..|++++
T Consensus 185 ~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (280)
T PRK13649 185 MTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGKLVLSGKPKD 231 (280)
T ss_pred HHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999877999999999987 6888999999999999999988765
No 118
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.4e-35 Score=359.53 Aligned_cols=191 Identities=32% Similarity=0.487 Sum_probs=169.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc--ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES--RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
++|+||||||||||+|+|+|+.+|. +|+|.++|+++.. ...++.+||++|++.+++.+||+||+.|.++++ ..
T Consensus 959 ~aLLG~NGAGKSTLLkiLaGLl~Pt--sG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~ 1033 (2272)
T TIGR01257 959 TAFLGHNGAGKTTTLSILTGLLPPT--SGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GR 1033 (2272)
T ss_pred EEEECCCCChHHHHHHHHhcCCCCC--ceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CC
Confidence 4899999999999999999999854 5999999998753 234567999999999999999999999987654 23
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
++++.+++++++++.+||++.+|+.+++ |||||||||+||+||+.+|++++|||||+|||+.+++.+.++|++++
T Consensus 1034 ~~~~~~~~v~~lL~~vgL~~~~~~~~~~-----LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~ 1108 (2272)
T TIGR01257 1034 SWEEAQLEMEAMLEDTGLHHKRNEEAQD-----LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR 1108 (2272)
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh
Confidence 4455667899999999999988887765 99999999999999999999999999999999999999999999995
Q ss_pred hcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccchHHHHH
Q 007474 159 KSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPATDFSLFF 204 (602)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~~f 204 (602)
+|+|||++||+++ ++..++||+++|++|+++..|++.. +++.|
T Consensus 1109 -~g~TIIltTHdmd-ea~~laDrI~iL~~GkL~~~Gs~~~-Lk~~~ 1151 (2272)
T TIGR01257 1109 -SGRTIIMSTHHMD-EADLLGDRIAIISQGRLYCSGTPLF-LKNCF 1151 (2272)
T ss_pred -CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHH-HHHhc
Confidence 6999999999987 6889999999999999999998876 55433
No 119
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-37 Score=318.53 Aligned_cols=187 Identities=28% Similarity=0.438 Sum_probs=159.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc-----ccccceEEEEccCCcC-CCCCCHHHHHHHHHHhcC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES-----RLLKIISAYVMQDELL-FPMLTVEETLMFSAECRL 74 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l-~~~lTV~e~l~f~~~~~~ 74 (602)
++|+|||||||||||++|+|+++|. +|+|.++|+++.. ...++.++||+|++.. +...|+.||+.+.....
T Consensus 30 ~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~- 106 (271)
T PRK13638 30 TGLVGANGCGKSTLFMNLSGLLRPQ--KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL- 106 (271)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCC--ccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc-
Confidence 4899999999999999999998854 5999999998741 1234568999999753 44568999998764432
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 007474 75 PRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVL 154 (602)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (602)
.....+..++++++++.+||.+..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|
T Consensus 107 --~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l 179 (271)
T PRK13638 107 --GVPEAEITRRVDEALTLVDAQHFRHQPIQ-----CLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAII 179 (271)
T ss_pred --CCCHHHHHHHHHHHHHHcCCHhHhcCCch-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 23344556778999999999887777665 49999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 155 GEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 155 ~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++++|+|||+++|++. ++.+++|++++|++|++++.|++++
T Consensus 180 ~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 222 (271)
T PRK13638 180 RRIVAQGNHVIISSHDID-LIYEISDAVYVLRQGQILTHGAPGE 222 (271)
T ss_pred HHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999877999999999987 5889999999999999999998765
No 120
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-37 Score=316.86 Aligned_cols=190 Identities=24% Similarity=0.465 Sum_probs=160.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc---c-ccceEEEEccCCcCCCCCCHHHHHHHHHHhcCC-
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR---L-LKIISAYVMQDELLFPMLTVEETLMFSAECRLP- 75 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~---~-~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~- 75 (602)
++|+||||||||||+++|+|+.++ .+|+|.++|.++... . .+..++|++|++.+++.+||+||+.+.......
T Consensus 34 ~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~ 111 (255)
T PRK11300 34 VSLIGPNGAGKTTVFNCLTGFYKP--TGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKT 111 (255)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCC--CcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccc
Confidence 489999999999999999999875 469999999987531 1 234579999999999999999999986431110
Q ss_pred ---------CCC--CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 007474 76 ---------RSV--SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDS 144 (602)
Q Consensus 76 ---------~~~--~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~ 144 (602)
... ...+..++++++++.+||.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv~la~al~~~p~llllDEPt~~LD~ 186 (255)
T PRK11300 112 GLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGN-----LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNP 186 (255)
T ss_pred hhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCH
Confidence 000 1123346788999999998877777654 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 145 TSAFKVVKVLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 145 ~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.++..+.+.|++++++ |+|||+++|+++ ++.++||++++|++|++++.|++++
T Consensus 187 ~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 240 (255)
T PRK11300 187 KETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVNQGTPLANGTPEE 240 (255)
T ss_pred HHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEecCCHHH
Confidence 9999999999999875 899999999987 6889999999999999999988655
No 121
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-38 Score=314.58 Aligned_cols=185 Identities=25% Similarity=0.452 Sum_probs=158.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc----cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR----LLKIISAYVMQDELLFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~----~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~ 76 (602)
++|+||||||||||+++|+|..++ .+|+|.++|+++... ..++.++|++|+..+++.+||.||+.+.....
T Consensus 34 ~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--- 108 (237)
T PRK11614 34 VTLIGANGAGKTTLLGTLCGDPRA--TSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA--- 108 (237)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc---
Confidence 489999999999999999999875 459999999987532 23456899999999999999999998754211
Q ss_pred CCCHHHHHHHHHHHHHHc-CCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQL-GLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLG 155 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (602)
...+.+++++++++.+ ++.+..++.+. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 109 --~~~~~~~~~~~~l~~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~ 181 (237)
T PRK11614 109 --ERDQFQERIKWVYELFPRLHERRIQRAG-----TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIE 181 (237)
T ss_pred --ChhHHHHHHHHHHHHHHHHHHHHhCchh-----hCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence 1233445677888888 57766665554 599999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 156 EIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 156 ~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+++++|+|||+++|+++ ++.+++|++++|++|++++.|++++
T Consensus 182 ~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 223 (237)
T PRK11614 182 QLREQGMTIFLVEQNAN-QALKLADRGYVLENGHVVLEDTGDA 223 (237)
T ss_pred HHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCCHHH
Confidence 99888999999999987 6899999999999999999998765
No 122
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.4e-37 Score=313.57 Aligned_cols=189 Identities=25% Similarity=0.449 Sum_probs=160.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc----cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCC-
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR----LLKIISAYVMQDELLFPMLTVEETLMFSAECRLP- 75 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~----~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~- 75 (602)
++|+|||||||||||++|+|++++. +|+|.++|+++... ..++.++|++|++.+++.+||+||+.+.......
T Consensus 31 ~~l~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~ 108 (242)
T TIGR03411 31 RVIIGPNGAGKTTMMDVITGKTRPD--EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSV 108 (242)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhccccc
Confidence 4899999999999999999998754 59999999987431 1234689999999999999999999886432100
Q ss_pred -C---CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 007474 76 -R---SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVV 151 (602)
Q Consensus 76 -~---~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (602)
. ....++.+++++++++.+|+.+..++.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~ 183 (242)
T TIGR03411 109 FASLFFRLSAEEKDRIEEVLETIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTA 183 (242)
T ss_pred ccccccccHHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHH
Confidence 0 012234567889999999999877777654 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 152 KVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 152 ~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+.|+++++ ++|||+++|+++ ++.++||++++|++|+++..|++++
T Consensus 184 ~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 184 ELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred HHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEECCeEEeeCCHHH
Confidence 99999976 789999999987 6889999999999999999887654
No 123
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.2e-37 Score=311.83 Aligned_cols=189 Identities=25% Similarity=0.390 Sum_probs=158.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC--CceeEEEECCEecccccc-cceEEEEccCCc--CCCCCCHHHHHHHHHHhcCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE--SLKGTVTLNGAVLESRLL-KIISAYVMQDEL--LFPMLTVEETLMFSAECRLP 75 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~--~~~G~i~~~g~~~~~~~~-~~~~~yv~Q~~~--l~~~lTV~e~l~f~~~~~~~ 75 (602)
++|+||||||||||+|+|+|+.++. +.+|+|.++|+++..... ++.++|++|++. +.+.+|+.|++.+.....
T Consensus 15 ~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~-- 92 (230)
T TIGR02770 15 LALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSL-- 92 (230)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHHHc--
Confidence 4899999999999999999998751 146999999998754322 346899999974 667889999998765432
Q ss_pred CCCCHHHHHHHHHHHHHHcCCC---cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 007474 76 RSVSKKRKRERVEALIDQLGLR---SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK 152 (602)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~---~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (602)
.....+.+++++++++.+++. +..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+
T Consensus 93 -~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~ 166 (230)
T TIGR02770 93 -GKLSKQARALILEALEAVGLPDPEEVLKKYPF-----QLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLK 166 (230)
T ss_pred -CccHHHHHHHHHHHHHHcCCCchHHHHhCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHH
Confidence 112344467799999999997 34555554 599999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 153 VLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 153 ~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.|++++++ |+|||+++|+++ ++..++|++++|++|+++..|++++
T Consensus 167 ~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 212 (230)
T TIGR02770 167 LLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKE 212 (230)
T ss_pred HHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999874 899999999987 6888999999999999999987655
No 124
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-37 Score=314.87 Aligned_cols=190 Identities=27% Similarity=0.370 Sum_probs=160.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE---SLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRL 74 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~---~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~ 74 (602)
++|+||||||||||+++|+|+.++. +.+|+|.++|+++.. ...++.++|++|++.+++.+||.||+.+......
T Consensus 32 ~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~ 111 (250)
T PRK14247 32 TALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNR 111 (250)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhcc
Confidence 4899999999999999999998742 357999999998743 2345678999999988999999999988654321
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 75 PRSVSKKRKRERVEALIDQLGLRS----AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
. .....+.+++++++++.+||.+ ..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+
T Consensus 112 ~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l 185 (250)
T PRK14247 112 L-VKSKKELQERVRWALEKAQLWDEVKDRLDAPA-----GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKI 185 (250)
T ss_pred c-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH
Confidence 1 1133455678899999999864 344444 46999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|+++++ |+|+|+++|+++ ++.+.+|++++|++|+++..|++++
T Consensus 186 ~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14247 186 ESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYKGQIVEWGPTRE 231 (250)
T ss_pred HHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEECCeEEEECCHHH
Confidence 999999965 899999999987 5888999999999999999987665
No 125
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.6e-37 Score=313.14 Aligned_cols=193 Identities=24% Similarity=0.269 Sum_probs=158.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc---c-ccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR---L-LKIISAYVMQDELLFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~---~-~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~ 76 (602)
++|+|||||||||||++|+|+.+..+.+|+|.++|+++... . .+..++|++|++.+++.+|++|++.+........
T Consensus 29 ~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~ 108 (243)
T TIGR01978 29 HAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSA 108 (243)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcc
Confidence 58999999999999999999952123569999999987531 1 2334899999999999999999998865432110
Q ss_pred ----CCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 007474 77 ----SVSKKRKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVV 151 (602)
Q Consensus 77 ----~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (602)
.....+..++++++++.+||. +..++.++ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~ 184 (243)
T TIGR01978 109 RGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVA 184 (243)
T ss_pred cccccccHHHHHHHHHHHHHHcCCchhhcccccc----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH
Confidence 112334456889999999997 45555543 149999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEEcCCcHHHHHH-hhHHhhhcCCceeecCCccc
Q 007474 152 KVLGEIAKSGSVVIMSIHQPSYRIFSL-LNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 152 ~~l~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~ 198 (602)
+.|++++++|+|||+++|+++ .+... +|++++|++|++++.|++++
T Consensus 185 ~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (243)
T TIGR01978 185 EGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLDGRIVKSGDVEL 231 (243)
T ss_pred HHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeCCEEEEecCHHH
Confidence 999999888999999999987 57777 79999999999999987654
No 126
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-37 Score=316.39 Aligned_cols=187 Identities=23% Similarity=0.373 Sum_probs=158.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE---SLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~---~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+|||||||||||++|+|+.++. +.+|+|.++|+++.. ...++.++|++|++.+++ +||+||+.+....
T Consensus 41 ~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~ 119 (258)
T PRK14268 41 TALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRI 119 (258)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHH
Confidence 5899999999999999999998742 357999999998642 123566899999998888 8999999987543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLR----SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAF 148 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (602)
. ..+.++.+++++++++.+|+. +..++.+ +.|||||||||+||++|+.+|++++|||||+|||+.++.
T Consensus 120 ~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 191 (258)
T PRK14268 120 H---GANKKDLDGVVENALRSAALWDETSDRLKSPA-----LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTA 191 (258)
T ss_pred c---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHH
Confidence 2 234445566789999999984 3344444 459999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 149 KVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 149 ~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.+.|+++++ |+|||+++|++. ++.++||++++|++|++++.|++++
T Consensus 192 ~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 192 RIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999965 799999999987 5888999999999999999987665
No 127
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.2e-37 Score=310.20 Aligned_cols=181 Identities=26% Similarity=0.434 Sum_probs=158.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+|||||||||||++|+|++++ .+|+|.++|+++.... .+.++|++|++.+++.+|++||+.+....+ ...
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~---~~~- 101 (223)
T TIGR03740 29 YGLLGPNGAGKSTLLKMITGILRP--TSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARENLKVHTTLL---GLP- 101 (223)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEeccccc-cccEEEEcCCCCccccCCHHHHHHHHHHHc---CCC-
Confidence 489999999999999999999875 4699999999875432 246899999999999999999998765432 111
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKS 160 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~ 160 (602)
++++.++++.+||++..++.+++ ||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 102 ---~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~ 173 (223)
T TIGR03740 102 ---DSRIDEVLNIVDLTNTGKKKAKQ-----FSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ 173 (223)
T ss_pred ---HHHHHHHHHHcCCcHHHhhhHhh-----CCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHC
Confidence 34678899999999887777654 9999999999999999999999999999999999999999999999878
Q ss_pred CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCcc
Q 007474 161 GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPA 197 (602)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 197 (602)
|+|||+++|+++ ++.+++|++++|++|+++..|++.
T Consensus 174 ~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 174 GITVILSSHILS-EVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred CCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChh
Confidence 999999999987 588999999999999999998764
No 128
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-37 Score=319.82 Aligned_cols=186 Identities=27% Similarity=0.416 Sum_probs=161.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc----ccccceEEEEccCCc-CCCCCCHHHHHHHHHHhcCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES----RLLKIISAYVMQDEL-LFPMLTVEETLMFSAECRLP 75 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~----~~~~~~~~yv~Q~~~-l~~~lTV~e~l~f~~~~~~~ 75 (602)
++|+|||||||||||++|+|++++ .+|+|.++|.++.. ...++.++|++|++. .+...||.||+.+.....
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-- 106 (274)
T PRK13644 31 IGIIGKNGSGKSTLALHLNGLLRP--QKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL-- 106 (274)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc--
Confidence 589999999999999999999875 45999999998743 233566899999975 466789999998865432
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 007474 76 RSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLG 155 (602)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (602)
..+..+.+++++++++.+||++..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+
T Consensus 107 -~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 180 (274)
T PRK13644 107 -CLPPIEIRKRVDRALAEIGLEKYRHRSPK-----TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIK 180 (274)
T ss_pred -CCCHHHHHHHHHHHHHHCCCHHHhcCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 23455666789999999999988877765 499999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 156 EIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 156 ~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+++++|.|||+++|++. ++ +.+|++++|++|++++.|++++
T Consensus 181 ~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~ 221 (274)
T PRK13644 181 KLHEKGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPEN 221 (274)
T ss_pred HHHhCCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHH
Confidence 99888999999999987 46 6799999999999999998765
No 129
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-37 Score=316.31 Aligned_cols=187 Identities=34% Similarity=0.464 Sum_probs=160.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+|||||||||||++|+|+.++ .+|+|.++|.++.. ...++.++|++|++.+++.+||+||+.+..... .
T Consensus 31 ~~i~G~nGsGKSTLl~~i~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~ 105 (258)
T PRK13548 31 VAILGPNGAGKSTLLRALSGELSP--DSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---G 105 (258)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---C
Confidence 489999999999999999999875 45999999998643 223456899999998888899999998854321 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHh------hCCcEEEEeCCCCCCCHHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDII------HDPILLFLDEPTSGLDSTSAFKVV 151 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~------~~p~lllLDEPtsgLD~~~~~~i~ 151 (602)
...++.+++++++++.+||.+..++.+++ ||||||||++||++|+ .+|++|+|||||+|||+.++..+.
T Consensus 106 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~ 180 (258)
T PRK13548 106 LSRAEDDALVAAALAQVDLAHLAGRDYPQ-----LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVL 180 (258)
T ss_pred CCcHHHHHHHHHHHHHcCCHhHhcCCccc-----CCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHH
Confidence 12234456789999999998877777664 9999999999999999 599999999999999999999999
Q ss_pred HHHHHHH-hcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 152 KVLGEIA-KSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 152 ~~l~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+.|++++ ++|+|||+++|++. ++.+++|++++|++|+++..|++++
T Consensus 181 ~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 181 RLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred HHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEEEeeCCHHH
Confidence 9999998 57999999999987 5888999999999999999887654
No 130
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=2.5e-37 Score=308.90 Aligned_cols=180 Identities=32% Similarity=0.471 Sum_probs=154.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccccc------c-cceEEEEccCCcCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRL------L-KIISAYVMQDELLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~------~-~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~ 73 (602)
++|+||||||||||+++|+|++++. +|+|.++|+++.... . ++.++|++|++.+++.+||.||+.+....+
T Consensus 39 ~~i~G~nGsGKSTLl~~i~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~ 116 (228)
T PRK10584 39 IALIGESGSGKSTLLAILAGLDDGS--SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR 116 (228)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCC--CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc
Confidence 5899999999999999999998754 599999999875321 1 246899999999999999999998865432
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 007474 74 LPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKV 153 (602)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (602)
.....+.+++++++++.+||.+..++.+. .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.
T Consensus 117 ---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 188 (228)
T PRK10584 117 ---GESSRQSRNGAKALLEQLGLGKRLDHLPA-----QLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL 188 (228)
T ss_pred ---CCCHHHHHHHHHHHHHHcCCHhHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 22345556789999999999887777665 4999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceee
Q 007474 154 LGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVY 192 (602)
Q Consensus 154 l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 192 (602)
|++++++ |.|||+++|+++ .+ +.+|++++|++|++++
T Consensus 189 l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 189 LFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEe
Confidence 9999765 899999999987 45 5699999999999874
No 131
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-37 Score=318.75 Aligned_cols=187 Identities=29% Similarity=0.464 Sum_probs=161.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCc-CCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDEL-LFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~-l~~~lTV~e~l~f~~~~~~~~ 76 (602)
++|+||||||||||+++|+|+++| .+|+|.++|+++.. ...++.++||+|++. .+...||.||+.+.....
T Consensus 33 ~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~--- 107 (277)
T PRK13652 33 IAVIGPNGAGKSTLFRHFNGILKP--TSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL--- 107 (277)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---
Confidence 489999999999999999999885 46999999998753 234566899999963 344679999998765422
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
....++.+++++++++.+||.+..++.+. .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus 108 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~ 182 (277)
T PRK13652 108 GLDEETVAHRVSSALHMLGLEELRDRVPH-----HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLND 182 (277)
T ss_pred CCCHHHHHHHHHHHHHHCCChhHhcCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 23455566789999999999988877765 4999999999999999999999999999999999999999999999
Q ss_pred HHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 157 IAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 157 l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++ |+|||+++|+++ ++.+.||++++|++|++++.|++++
T Consensus 183 l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~~ 224 (277)
T PRK13652 183 LPETYGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVEE 224 (277)
T ss_pred HHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCHHH
Confidence 9875 899999999987 6889999999999999999998766
No 132
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=2.8e-37 Score=310.18 Aligned_cols=183 Identities=28% Similarity=0.467 Sum_probs=157.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc--ccccceEEEEc-cCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES--RLLKIISAYVM-QDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~--~~~~~~~~yv~-Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+|||||||||||++|+|+++| .+|+|.++|++... ...++.++|++ |++.+++.+||+|++.+....+ .
T Consensus 50 ~~i~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~---~ 124 (236)
T cd03267 50 VGFIGPNGAGKTTTLKILSGLLQP--TSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIY---D 124 (236)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHc---C
Confidence 489999999999999999999875 45999999987532 23455789998 5567888999999998865432 2
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEI 157 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (602)
....+..++++++++.+||.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++
T Consensus 125 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 199 (236)
T cd03267 125 LPPARFKKRLDELSELLDLEELLDTPVRQ-----LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEY 199 (236)
T ss_pred CCHHHHHHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 33445566788999999999888887764 9999999999999999999999999999999999999999999999
Q ss_pred Hhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecC
Q 007474 158 AKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSG 194 (602)
Q Consensus 158 ~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 194 (602)
+++ |+|||+++|+++ ++.+++|++++|++|++++.|
T Consensus 200 ~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 200 NRERGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence 875 899999999987 688999999999999998765
No 133
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-37 Score=315.27 Aligned_cols=178 Identities=26% Similarity=0.431 Sum_probs=155.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+||||||||||+++|+|++++. +|+|.++|.++. ..++.++|++|++.+++.+||+||+.+...
T Consensus 41 ~~I~G~NGsGKSTLlk~l~Gl~~p~--~G~i~~~g~~~~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~--------- 107 (257)
T PRK11247 41 VAVVGRSGCGKSTLLRLLAGLETPS--AGELLAGTAPLA--EAREDTRLMFQDARLLPWKKVIDNVGLGLK--------- 107 (257)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CeEEEECCEEHH--HhhCceEEEecCccCCCCCcHHHHHHhccc---------
Confidence 4899999999999999999998754 599999998764 245668999999999999999999987421
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK- 159 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~- 159 (602)
...+++++++++.+||.+..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 108 ~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 182 (257)
T PRK11247 108 GQWRDAALQALAAVGLADRANEWPA-----ALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQ 182 (257)
T ss_pred chHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 1124578899999999887776665 5999999999999999999999999999999999999999999999865
Q ss_pred cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCcc
Q 007474 160 SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPA 197 (602)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 197 (602)
.|+|||+++|++. ++.+++|++++|++|++++.|+..
T Consensus 183 ~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 183 HGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred cCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 5899999999987 588899999999999999887653
No 134
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.5e-37 Score=317.07 Aligned_cols=192 Identities=28% Similarity=0.471 Sum_probs=161.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCC-ceeEEEECCEeccc--------ccccceEEEEccCCcCCCCCCHHHHHHHHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKES-LKGTVTLNGAVLES--------RLLKIISAYVMQDELLFPMLTVEETLMFSAE 71 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~-~~G~i~~~g~~~~~--------~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~ 71 (602)
++|+||||||||||+++|+|+.++.. .+|+|.++|+++.. ...++.++|++|++.+++.+||.||+.+...
T Consensus 33 ~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 112 (262)
T PRK09984 33 VALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGAL 112 (262)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhc
Confidence 58999999999999999999987642 46999999988742 1234568999999999999999999987542
Q ss_pred hcCCC-----CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 007474 72 CRLPR-----SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTS 146 (602)
Q Consensus 72 ~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~ 146 (602)
...+. .....+.+++++++++.+||.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 187 (262)
T PRK09984 113 GSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVST-----LSGGQQQRVAIARALMQQAKVILADEPIASLDPES 187 (262)
T ss_pred ccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccc-----cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHH
Confidence 11000 011234456889999999998877777664 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 147 AFKVVKVLGEIAK-SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 147 ~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+..+.+.|+++++ +|+|||+++|++. ++.+++|++++|++|++++.|++++
T Consensus 188 ~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~ 239 (262)
T PRK09984 188 ARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQGHVFYDGSSQQ 239 (262)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999986 4899999999987 5889999999999999999987654
No 135
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=2.2e-37 Score=313.96 Aligned_cols=188 Identities=26% Similarity=0.405 Sum_probs=161.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc----------------ccccceEEEEccCCcCCCCCCHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES----------------RLLKIISAYVMQDELLFPMLTVEE 64 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~----------------~~~~~~~~yv~Q~~~l~~~lTV~e 64 (602)
++|+||||||||||+++|+|+.++ .+|+|.++|+++.. ...++.++|++|++.+++..||.|
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 106 (252)
T TIGR03005 29 VALIGPSGSGKSTILRILMTLEPI--DEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLD 106 (252)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHH
Confidence 489999999999999999999875 46999999998742 123567899999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 007474 65 TLMFSAECRLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDS 144 (602)
Q Consensus 65 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~ 144 (602)
|+.+..... ......+.+++++++++.+|+.+..++.+. .||||||||++||++|+.+|++++|||||+|||+
T Consensus 107 nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEP~~~LD~ 179 (252)
T TIGR03005 107 NVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHMPA-----QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDP 179 (252)
T ss_pred HHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcChh-----hcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 998754211 123344556788999999999887776654 5999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 145 TSAFKVVKVLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 145 ~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.++..+.+.|++++++ |.|||+++|++. ++.+++|++++|++|++++.|+.++
T Consensus 180 ~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T TIGR03005 180 ELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDKGRIVEQGKPDE 233 (252)
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999875 899999999987 5888999999999999999887654
No 136
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-37 Score=314.17 Aligned_cols=190 Identities=27% Similarity=0.419 Sum_probs=159.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE---SLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~---~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+||||||||||+++|+|++++. +.+|+|.++|+++.. ...++.++|++|++.+++.+||.||+.+....
T Consensus 33 ~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~ 112 (253)
T PRK14267 33 FALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKL 112 (253)
T ss_pred EEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHh
Confidence 4899999999999999999998763 347999999998741 13456789999999999999999999886543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLRS----AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAF 148 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (602)
+. ...+.++..++++++++.+|+.+ ..++. ++.||||||||++||++|+.+|++++|||||+|||+.++.
T Consensus 113 ~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~ 186 (253)
T PRK14267 113 NG-LVKSKKELDERVEWALKKAALWDEVKDRLNDY-----PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTA 186 (253)
T ss_pred cC-ccCCHHHHHHHHHHHHHHcCCccchhhhhccC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 21 01133455567889999999853 23433 3469999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 149 KVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 149 ~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.+.|+++++ ++|||+++|++. ++.+++|++++|++|+++..|++++
T Consensus 187 ~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 187 KIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999975 699999999987 5889999999999999999988665
No 137
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-37 Score=315.84 Aligned_cols=186 Identities=24% Similarity=0.355 Sum_probs=160.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCc-CCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDEL-LFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~-l~~~lTV~e~l~f~~~~~~~~ 76 (602)
++|+||||||||||+++|+|+.++ .+|+|.++|+++.. ...++.++|++|++. +++..|+.+|+.+.....
T Consensus 38 ~~I~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~--- 112 (269)
T PRK13648 38 TSIVGHNGSGKSTIAKLMIGIEKV--KSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH--- 112 (269)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---
Confidence 489999999999999999999875 45999999998743 234567899999974 678889999998865422
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
....++..++++++++.+|+.+..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 113 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 187 (269)
T PRK13648 113 AVPYDEMHRRVSEALKQVDMLERADYEPN-----ALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRK 187 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 23445556788999999999887777665 5999999999999999999999999999999999999999999999
Q ss_pred HHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 157 IAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 157 l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++ |+|||+++|+++ ++.. +|++++|++|++++.|++++
T Consensus 188 ~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~G~i~~~g~~~~ 228 (269)
T PRK13648 188 VKSEHNITIISITHDLS-EAME-ADHVIVMNKGTVYKEGTPTE 228 (269)
T ss_pred HHHhcCCEEEEEecCch-HHhc-CCEEEEEECCEEEEecCHHH
Confidence 9864 899999999997 4654 99999999999999998765
No 138
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-37 Score=316.33 Aligned_cols=187 Identities=29% Similarity=0.461 Sum_probs=160.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc-----ccccceEEEEccCCc-CCCCCCHHHHHHHHHHhcC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES-----RLLKIISAYVMQDEL-LFPMLTVEETLMFSAECRL 74 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~-l~~~lTV~e~l~f~~~~~~ 74 (602)
++|+||||||||||+++|+|++++. +|+|.++|++++. ...++.++|++|++. .+...||.||+.+.....
T Consensus 31 ~~l~G~nGsGKSTLl~~i~Gl~~~~--~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~- 107 (275)
T PRK13639 31 VALLGPNGAGKSTLFLHFNGILKPT--SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL- 107 (275)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--ccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc-
Confidence 5899999999999999999998854 5999999998742 123567999999963 333479999998764321
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 007474 75 PRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVL 154 (602)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (602)
...+.+..+++.++++.+||.+..++.+++ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus 108 --~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l 180 (275)
T PRK13639 108 --GLSKEEVEKRVKEALKAVGMEGFENKPPHH-----LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLL 180 (275)
T ss_pred --CCCHHHHHHHHHHHHHHCCCchhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 234455667899999999999888877664 9999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 155 GEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 155 ~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++++|.|||+++|+++ ++.++||++++|++|+++..|++++
T Consensus 181 ~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 223 (275)
T PRK13639 181 YDLNKEGITIIISTHDVD-LVPVYADKVYVMSDGKIIKEGTPKE 223 (275)
T ss_pred HHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999878999999999987 5888999999999999999998765
No 139
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=3.1e-37 Score=315.27 Aligned_cols=188 Identities=28% Similarity=0.414 Sum_probs=159.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc------cccceEEEEccCC--cCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR------LLKIISAYVMQDE--LLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~------~~~~~~~yv~Q~~--~l~~~lTV~e~l~f~~~~ 72 (602)
++|+|||||||||||++|+|++++ .+|+|.++|+++... ..++.++|++|++ .+++.+||+||+.+....
T Consensus 40 ~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~ 117 (265)
T TIGR02769 40 VGLLGRSGCGKSTLARLLLGLEKP--AQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRH 117 (265)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHH
Confidence 589999999999999999999875 459999999987531 1345699999996 467889999999875432
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVV 151 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (602)
. ......+.+++++++++.+||. +..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.
T Consensus 118 ~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~ 190 (265)
T TIGR02769 118 L--TSLDESEQKARIAELLDMVGLRSEDADKLPR-----QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVIL 190 (265)
T ss_pred h--cCCCHHHHHHHHHHHHHHcCCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 1 1233445567889999999996 56666655 59999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 152 KVLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 152 ~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+.|++++++ |+|||+++|++. .+.+++|++++|++|++++.|++++
T Consensus 191 ~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 237 (265)
T TIGR02769 191 ELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDKGQIVEECDVAQ 237 (265)
T ss_pred HHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeCCEEEEECCHHH
Confidence 999999875 899999999987 5888999999999999999998765
No 140
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-37 Score=313.99 Aligned_cols=188 Identities=23% Similarity=0.348 Sum_probs=157.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE---SLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~---~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+|||||||||||++|+|++++. +.+|+|.++|+++.. ...++.++|++|++.+++ +||+||+.+....
T Consensus 36 ~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~ 114 (254)
T PRK14273 36 TALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKI 114 (254)
T ss_pred EEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHh
Confidence 5899999999999999999998753 247999999998642 234567999999988875 8999999886543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLR----SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAF 148 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (602)
.. .....+.+++++++++.+++. +..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 115 ~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 187 (254)
T PRK14273 115 HG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNA-----LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTG 187 (254)
T ss_pred cC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHH
Confidence 21 113344567889999999873 3445544 459999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 149 KVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 149 ~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.+.|+++++ ++|||+++|+++ ++.+++||+++|++|+++..|++++
T Consensus 188 ~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 235 (254)
T PRK14273 188 KIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFFLNGCIEEESSTDE 235 (254)
T ss_pred HHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999964 799999999997 5889999999999999999998765
No 141
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-37 Score=315.19 Aligned_cols=190 Identities=26% Similarity=0.407 Sum_probs=161.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCC-C
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLP-R 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~-~ 76 (602)
++|+|||||||||||++|+|++++ .+|+|.++|+++.. ...++.++|++|+..+++.+||.||+.+....... .
T Consensus 31 ~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~ 108 (255)
T PRK11231 31 TALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLW 108 (255)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCC--CCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhc
Confidence 489999999999999999999875 46999999998643 23345689999999888999999999875321000 0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
...+.+..++++++++.+||.+..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus 109 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 183 (255)
T PRK11231 109 GRLSAEDNARVNQAMEQTRINHLADRRLT-----DLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRE 183 (255)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 11123445678999999999887777765 4999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 157 IAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 157 l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++|+|||+++|++. ++.+++|++++|++|+++..|+.++
T Consensus 184 l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 224 (255)
T PRK11231 184 LNTQGKTVVTVLHDLN-QASRYCDHLVVLANGHVMAQGTPEE 224 (255)
T ss_pred HHHCCCEEEEEECCHH-HHHHhcCEEEEEECCeEEEEcCHHH
Confidence 9878999999999997 6899999999999999999887655
No 142
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-37 Score=344.43 Aligned_cols=192 Identities=22% Similarity=0.347 Sum_probs=165.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccccc----ccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRL----LKIISAYVMQDELLFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~----~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~ 76 (602)
++|+||||||||||||+|+|+.++.+.+|+|.++|+++.... .++.++||+|++.+++.+||+||+.+....+...
T Consensus 34 ~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 113 (506)
T PRK13549 34 VSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGG 113 (506)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccC
Confidence 489999999999999999999875335799999999875321 2456899999999999999999998865432111
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
..+.++..++++++++.+|+.+..++.+++ |||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++
T Consensus 114 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 188 (506)
T PRK13549 114 IMDYDAMYLRAQKLLAQLKLDINPATPVGN-----LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRD 188 (506)
T ss_pred CcCHHHHHHHHHHHHHHcCCCCCcccchhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 123445567899999999998888877764 999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 157 IAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 157 l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++|+|||+++|++. ++.++||++++|++|++++.|++++
T Consensus 189 l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 229 (506)
T PRK13549 189 LKAHGIACIYISHKLN-EVKAISDTICVIRDGRHIGTRPAAG 229 (506)
T ss_pred HHHCCCEEEEEeCcHH-HHHHhcCEEEEEECCEEeeeccccc
Confidence 9888999999999987 6888999999999999999998876
No 143
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-37 Score=309.36 Aligned_cols=187 Identities=31% Similarity=0.506 Sum_probs=162.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc-cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR-LLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
++|+||||||||||+++|+|++++. +|+|.++|.++... ..++.++|++|++.+++.+||.||+.+..... ...
T Consensus 28 ~~i~G~nG~GKStLl~~l~G~~~p~--~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~ 102 (235)
T cd03299 28 FVILGPTGSGKSVLLETIAGFIKPD--SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVD 102 (235)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCCC--ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCC
Confidence 4899999999999999999998854 59999999987542 23457899999999999999999998765332 233
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007474 80 KKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK 159 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~ 159 (602)
..+..+++.++++.+||.+..++.+. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 103 ~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~ 177 (235)
T cd03299 103 KKEIERKVLEIAEMLGIDHLLNRKPE-----TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRK 177 (235)
T ss_pred HHHHHHHHHHHHHHcCChhHHhcCcc-----cCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH
Confidence 45566778899999999888877765 4999999999999999999999999999999999999999999999976
Q ss_pred c-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 160 S-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+ |+|||+++|++. ++.+++|++++|++|+++..|+.++
T Consensus 178 ~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 216 (235)
T cd03299 178 EFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEE 216 (235)
T ss_pred hcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHH
Confidence 5 999999999986 5888999999999999999887654
No 144
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-37 Score=323.42 Aligned_cols=188 Identities=27% Similarity=0.389 Sum_probs=162.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc------cccceEEEEccCC--cCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR------LLKIISAYVMQDE--LLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~------~~~~~~~yv~Q~~--~l~~~lTV~e~l~f~~~~ 72 (602)
++|+|+||||||||+++|+|++++ .+|+|.++|+++... .+++.++||+|++ .+.|.+||.+++......
T Consensus 44 ~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~ 121 (327)
T PRK11308 44 LAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLI 121 (327)
T ss_pred EEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHH
Confidence 589999999999999999999875 469999999987531 2456799999997 689999999999876543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLRS-AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVV 151 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (602)
.. ...+++.++++.++++.+||.+ ..++++ +.|||||||||+||+||+.+|++|++||||+|||..++.+++
T Consensus 122 ~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~p-----~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~ 194 (327)
T PRK11308 122 NT--SLSAAERREKALAMMAKVGLRPEHYDRYP-----HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVL 194 (327)
T ss_pred cc--CCCHHHHHHHHHHHHHHCCCChHHhcCCC-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHH
Confidence 21 2345667788999999999963 556555 459999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 152 KVLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 152 ~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++|++++++ |.|+|++||++. .+.+++|++++|++|++++.|+.++
T Consensus 195 ~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~G~ive~g~~~~ 241 (327)
T PRK11308 195 NLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYLGRCVEKGTKEQ 241 (327)
T ss_pred HHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999874 999999999987 5888999999999999999998765
No 145
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-37 Score=317.12 Aligned_cols=188 Identities=24% Similarity=0.403 Sum_probs=161.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCC-ceeEEEECCEeccc---ccccceEEEEccCCc-CCCCCCHHHHHHHHHHhcCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKES-LKGTVTLNGAVLES---RLLKIISAYVMQDEL-LFPMLTVEETLMFSAECRLP 75 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~-~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~-l~~~lTV~e~l~f~~~~~~~ 75 (602)
++|+||||||||||+++|+|++++.. .+|+|.++|+++.. ...++.++|++|++. +++..||.||+.|.....
T Consensus 36 ~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~-- 113 (282)
T PRK13640 36 TALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR-- 113 (282)
T ss_pred EEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC--
Confidence 58999999999999999999987532 23999999998753 234557899999974 677899999998764322
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 007474 76 RSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLG 155 (602)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (602)
..++++.+++++++++.+||.+..++.+. .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+
T Consensus 114 -~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~ 187 (282)
T PRK13640 114 -AVPRPEMIKIVRDVLADVGMLDYIDSEPA-----NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIR 187 (282)
T ss_pred -CCCHHHHHHHHHHHHHHCCChhHhcCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 24556667889999999999987777665 599999999999999999999999999999999999999999999
Q ss_pred HHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 156 EIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 156 ~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+++++ |+|||+++|+++ ++ ..||++++|++|+++..|++++
T Consensus 188 ~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~ 229 (282)
T PRK13640 188 KLKKKNNLTVISITHDID-EA-NMADQVLVLDDGKLLAQGSPVE 229 (282)
T ss_pred HHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHH
Confidence 99875 899999999987 45 5799999999999999998765
No 146
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-37 Score=316.12 Aligned_cols=190 Identities=29% Similarity=0.412 Sum_probs=160.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCC-C
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLP-R 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~-~ 76 (602)
++|+||||||||||+++|+|+.++ .+|+|.++|+++.. ...++.++|++|+..+++.+||.||+.+....... .
T Consensus 40 ~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 117 (265)
T PRK10575 40 TGLIGHNGSGKSTLLKMLGRHQPP--SEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGAL 117 (265)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccc
Confidence 489999999999999999999875 45999999998642 23455689999998888999999999875321110 0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
...+.+.+++++++++.++|.+..++.+++ ||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++
T Consensus 118 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~ 192 (265)
T PRK10575 118 GRFGAADREKVEEAISLVGLKPLAHRLVDS-----LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHR 192 (265)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 011233456789999999998877777664 999999999999999999999999999999999999999999999
Q ss_pred HHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 157 IAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 157 l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++ |.|||+++|++. ++.+.+|++++|++|+++..|++++
T Consensus 193 l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 193 LSQERGLTVIAVLHDIN-MAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHH
Confidence 9865 899999999987 6889999999999999999887654
No 147
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.9e-37 Score=313.85 Aligned_cols=190 Identities=29% Similarity=0.436 Sum_probs=160.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCC-C
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLP-R 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~-~ 76 (602)
++|+||||||||||+++|+|++++. +|+|.++|+++.. ...++.++|++|++.+++.+||.||+.+....... .
T Consensus 30 ~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 107 (256)
T TIGR03873 30 TGLLGPNGSGKSTLLRLLAGALRPD--AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLW 107 (256)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCC--CCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhc
Confidence 4899999999999999999998754 5999999998753 23345689999998888889999999875311000 0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
.....+..++++++++.+++.+..++.++. ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 108 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (256)
T TIGR03873 108 AGDSPHDAAVVDRALARTELSHLADRDMST-----LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRE 182 (256)
T ss_pred cCCCHHHHHHHHHHHHHcCcHhhhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 111233456789999999998877777654 999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 157 IAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 157 l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++|.|||+++|+++ ++.+++|++++|++|+++..|+.++
T Consensus 183 ~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 223 (256)
T TIGR03873 183 LAATGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPRE 223 (256)
T ss_pred HHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHH
Confidence 9877999999999997 6889999999999999999987655
No 148
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-37 Score=317.03 Aligned_cols=186 Identities=27% Similarity=0.415 Sum_probs=159.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc----ccccceEEEEccCCc-CCCCCCHHHHHHHHHHhcCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES----RLLKIISAYVMQDEL-LFPMLTVEETLMFSAECRLP 75 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~----~~~~~~~~yv~Q~~~-l~~~lTV~e~l~f~~~~~~~ 75 (602)
++|+||||||||||+++|+|++++ .+|+|.++|+++.. ...++.++|++|++. .+...||.|++.|.....
T Consensus 39 ~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~-- 114 (280)
T PRK13633 39 LVILGRNGSGKSTIAKHMNALLIP--SEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL-- 114 (280)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc--
Confidence 589999999999999999999885 45999999998753 234567899999964 233469999998875432
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 007474 76 RSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLG 155 (602)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (602)
..++.+.+++++++++.+||++..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 115 -~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~ 188 (280)
T PRK13633 115 -GIPPEEIRERVDESLKKVGMYEYRRHAPH-----LLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIK 188 (280)
T ss_pred -CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 23455667789999999999988887776 499999999999999999999999999999999999999999999
Q ss_pred HHHh-cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 156 EIAK-SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 156 ~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++ +|.|||+++|+++ ++.. +|++++|++|+++..|++++
T Consensus 189 ~l~~~~g~tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~~~ 230 (280)
T PRK13633 189 ELNKKYGITIILITHYME-EAVE-ADRIIVMDSGKVVMEGTPKE 230 (280)
T ss_pred HHHHhcCCEEEEEecChH-HHhc-CCEEEEEECCEEEEecCHHH
Confidence 9986 4999999999997 4654 99999999999999998766
No 149
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.1e-37 Score=307.00 Aligned_cols=187 Identities=29% Similarity=0.462 Sum_probs=162.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc-cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR-LLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
++|+||||||||||+++|+|.+++. +|+|.++|+++... ..++.++|++|++.+++.+|+.||+.+....+ ...
T Consensus 29 ~~i~G~nGsGKSTLl~~l~g~~~~~--~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~ 103 (232)
T cd03300 29 FTLLGPSGCGKTTLLRLIAGFETPT--SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLK---KLP 103 (232)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhc---CCC
Confidence 4899999999999999999999854 59999999987542 23456899999999999999999998865533 223
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007474 80 KKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK 159 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~ 159 (602)
....+++++++++.+|+.+..++.+. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 104 ~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~ 178 (232)
T cd03300 104 KAEIKERVAEALDLVQLEGYANRKPS-----QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQK 178 (232)
T ss_pred HHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 44556688999999999887777665 5999999999999999999999999999999999999999999999987
Q ss_pred c-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 160 S-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+ |+|||+++|++. ++.+++|++++|++|++++.|+..+
T Consensus 179 ~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~ 217 (232)
T cd03300 179 ELGITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEE 217 (232)
T ss_pred HcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHH
Confidence 5 899999999986 5889999999999999999887554
No 150
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=5.3e-37 Score=322.15 Aligned_cols=193 Identities=28% Similarity=0.422 Sum_probs=163.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC-CceeEEEECCEecccc---c---c-cceEEEEccCC--cCCCCCCHHHHHHHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE-SLKGTVTLNGAVLESR---L---L-KIISAYVMQDE--LLFPMLTVEETLMFSA 70 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~-~~~G~i~~~g~~~~~~---~---~-~~~~~yv~Q~~--~l~~~lTV~e~l~f~~ 70 (602)
++|+|+||||||||+++|+|++++. ..+|+|.++|+++... . . ++.++||+|++ .+.|.+|+.+++....
T Consensus 45 ~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~ 124 (330)
T PRK09473 45 LGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVL 124 (330)
T ss_pred EEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHH
Confidence 5899999999999999999999763 1379999999987531 1 2 24699999997 6899999999998765
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 71 ECRLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 71 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
.... ...+.+..+++.++++.+||.+..+. . +..+++|||||||||+||+||+.+|++|++||||+|||+.++.++
T Consensus 125 ~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~-~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i 200 (330)
T PRK09473 125 MLHK--GMSKAEAFEESVRMLDAVKMPEARKR-M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQI 200 (330)
T ss_pred HHhc--CCCHHHHHHHHHHHHHHcCCCChHHH-h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHH
Confidence 4331 24556667889999999999753322 2 245567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++.|++++++ |.|+|++|||+. .+.+++|++++|++|++++.|++++
T Consensus 201 ~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~G~ive~g~~~~ 248 (330)
T PRK09473 201 MTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYAGRTMEYGNARD 248 (330)
T ss_pred HHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999875 899999999987 5888999999999999999998766
No 151
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-37 Score=315.56 Aligned_cols=186 Identities=25% Similarity=0.460 Sum_probs=159.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCc-CCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDEL-LFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~-l~~~lTV~e~l~f~~~~~~~~ 76 (602)
++|+||||||||||+++|+|+.++. +|+|.++|+++.. ...++.++|++|++. .++.+||+||+.+.....
T Consensus 38 ~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~--- 112 (271)
T PRK13632 38 VAILGHNGSGKSTISKILTGLLKPQ--SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK--- 112 (271)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---
Confidence 4899999999999999999998754 5999999998753 234567899999974 677899999998865422
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
.....+.+++++++++.+||.+..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus 113 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~ 187 (271)
T PRK13632 113 KVPPKKMKDIIDDLAKKVGMEDYLDKEPQ-----NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVD 187 (271)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 23445556788999999999988877765 4999999999999999999999999999999999999999999999
Q ss_pred HHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 157 IAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 157 l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++ ++|||+++|+++ ++ ..+|++++|++|+++..|++++
T Consensus 188 ~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~ 228 (271)
T PRK13632 188 LRKTRKKTLISITHDMD-EA-ILADKVIVFSEGKLIAQGKPKE 228 (271)
T ss_pred HHHhcCcEEEEEEechh-HH-hhCCEEEEEECCEEEEecCHHH
Confidence 9876 589999999997 45 4799999999999999887655
No 152
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3e-37 Score=282.07 Aligned_cols=180 Identities=32% Similarity=0.478 Sum_probs=159.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc-------ccccceEEEEccCCcCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES-------RLLKIISAYVMQDELLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~ 73 (602)
+||+|||||||||||-+++|+..+ .+|+|.+.|+++.. ....+.+|+|+|...+.|+||..||+...+.++
T Consensus 39 vaiVG~SGSGKSTLl~vlAGLd~~--ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ 116 (228)
T COG4181 39 VAIVGPSGSGKSTLLAVLAGLDDP--SSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELR 116 (228)
T ss_pred EEEEcCCCCcHHhHHHHHhcCCCC--CCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhc
Confidence 589999999999999999999875 45999999998853 123457999999999999999999999888776
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 007474 74 LPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKV 153 (602)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (602)
- .+..+......++|+.+||.+..+.+++ +|||||+|||+||||++..|++||.||||-+||..+..+|.++
T Consensus 117 g---e~~~~~~~~A~~lL~~vGLg~Rl~HyP~-----qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDL 188 (228)
T COG4181 117 G---ESSADSRAGAKALLEAVGLGKRLTHYPA-----QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADL 188 (228)
T ss_pred C---CccccHHHHHHHHHHHhCcccccccCcc-----ccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHH
Confidence 2 2345566778999999999988876665 5999999999999999999999999999999999999999999
Q ss_pred HHHHHh-cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceee
Q 007474 154 LGEIAK-SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVY 192 (602)
Q Consensus 154 l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 192 (602)
|-.+.+ .|.|.|++||||. +..-|||.+-|.+|+++.
T Consensus 189 lF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 189 LFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHhhhcCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence 999876 5999999999985 788999999999999874
No 153
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.6e-37 Score=308.15 Aligned_cols=184 Identities=26% Similarity=0.431 Sum_probs=156.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc----cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR----LLKIISAYVMQDELLFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~----~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~ 76 (602)
++|+||||||||||+++|+|++++ .+|+|.++|.++... ..++.++|++|++.+++.+|+.||+.+.....
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--- 103 (230)
T TIGR03410 29 TCVLGRNGVGKTTLLKTLMGLLPV--KSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAAL--- 103 (230)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhc---
Confidence 489999999999999999999885 459999999987431 12456899999999999999999998865432
Q ss_pred CCCHHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLG-LRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLG 155 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (602)
... .++.++++++.++ +.+..++.+. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 104 ~~~---~~~~~~~~l~~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~ 175 (230)
T TIGR03410 104 PRR---SRKIPDEIYELFPVLKEMLGRRGG-----DLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIR 175 (230)
T ss_pred Ccc---hHHHHHHHHHHHHhHHHHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHH
Confidence 111 2344677788886 5665666655 599999999999999999999999999999999999999999999
Q ss_pred HHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 156 EIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 156 ~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+++++ |+|||+++|+++ ++.+++|++++|++|+++..|+.++
T Consensus 176 ~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~~~ 218 (230)
T TIGR03410 176 RLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVVASGAGDE 218 (230)
T ss_pred HHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 99875 899999999987 6888999999999999999998765
No 154
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-37 Score=320.94 Aligned_cols=190 Identities=28% Similarity=0.419 Sum_probs=160.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC--CceeEEEECCEecccc---c----ccceEEEEccCC--cCCCCCCHHHHHHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE--SLKGTVTLNGAVLESR---L----LKIISAYVMQDE--LLFPMLTVEETLMFS 69 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~--~~~G~i~~~g~~~~~~---~----~~~~~~yv~Q~~--~l~~~lTV~e~l~f~ 69 (602)
++|+|+||||||||+++|+|++++. ..+|+|.++|+++... . .++.++||+|++ .+.|.+||.+++...
T Consensus 36 ~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~ 115 (326)
T PRK11022 36 VGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEA 115 (326)
T ss_pred EEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHH
Confidence 5899999999999999999998642 3579999999987431 1 123689999997 589999999988765
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHcCCCc---ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 007474 70 AECRLPRSVSKKRKRERVEALIDQLGLRS---AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTS 146 (602)
Q Consensus 70 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~ 146 (602)
..... ...+++.++++.++++.+||.+ ..++. +++|||||||||+||+||+.+|++|++||||+|||+.+
T Consensus 116 l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~-----p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~ 188 (326)
T PRK11022 116 IKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVY-----PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTI 188 (326)
T ss_pred HHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCC-----chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Confidence 54321 2345667788999999999975 23444 45699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 147 AFKVVKVLGEIAK-SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 147 ~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+.++++.|+++++ .|.|+|++||+++ .+.+++||+++|++|++++.|++++
T Consensus 189 ~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~G~ive~g~~~~ 240 (326)
T PRK11022 189 QAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYAGQVVETGKAHD 240 (326)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999987 5899999999987 5888999999999999999998765
No 155
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=5.1e-37 Score=305.75 Aligned_cols=187 Identities=29% Similarity=0.458 Sum_probs=156.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCC--CCCCHHHHHHHHHHhcCC-CC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLF--PMLTVEETLMFSAECRLP-RS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~--~~lTV~e~l~f~~~~~~~-~~ 77 (602)
++|+||||||||||+++|+|+.++. +|+|.+||+++.. .++.++|++|++.++ ..+||.||+.+....... ..
T Consensus 9 ~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~ 84 (223)
T TIGR03771 9 LGLLGPNGAGKTTLLRAILGLIPPA--KGTVKVAGASPGK--GWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLR 84 (223)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCccchH--hhCcEEEecccccccCCCCccHHHHHHhcccccccccc
Confidence 5899999999999999999998754 5999999987642 345689999998764 347999999875321100 00
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEI 157 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (602)
....+.+++++++++.+|+++..++.+++ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 85 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~ 159 (223)
T TIGR03771 85 RPCVADFAAVRDALRRVGLTELADRPVGE-----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL 159 (223)
T ss_pred CCcHHHHHHHHHHHHHhCCchhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 12233456789999999998877777654 9999999999999999999999999999999999999999999999
Q ss_pred HhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 158 AKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 158 ~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+++|+|+|+++|+++ ++.+++|+++++ +|++++.|+.++
T Consensus 160 ~~~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~ 198 (223)
T TIGR03771 160 AGAGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQ 198 (223)
T ss_pred HHcCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHH
Confidence 878999999999987 688999999999 899999988765
No 156
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-37 Score=317.92 Aligned_cols=186 Identities=26% Similarity=0.400 Sum_probs=157.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc--------ccccceEEEEccCCc--CCCCCCHHHHHHHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES--------RLLKIISAYVMQDEL--LFPMLTVEETLMFSA 70 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~--------~~~~~~~~yv~Q~~~--l~~~lTV~e~l~f~~ 70 (602)
++|+||||||||||+++|+|++++ .+|+|.++|+++.. ...++.++|++|++. +++ .||+||+.|..
T Consensus 40 ~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~ 116 (289)
T PRK13645 40 TCVIGTTGSGKSTMIQLTNGLIIS--ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGP 116 (289)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHH
Confidence 589999999999999999999875 45999999998631 234567899999963 344 59999998865
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 007474 71 ECRLPRSVSKKRKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFK 149 (602)
Q Consensus 71 ~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 149 (602)
... ....++..++++++++.++|. +..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..
T Consensus 117 ~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~-----~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~ 188 (289)
T PRK13645 117 VNL---GENKQEAYKKVPELLKLVQLPEDYVKRSPF-----ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEED 188 (289)
T ss_pred HHc---CCCHHHHHHHHHHHHHHcCCChhHhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHH
Confidence 321 233445557788999999994 56666655 599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 150 VVKVLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 150 i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+.+.|++++++ |+|||+++|+++ ++.++||++++|++|++++.|++++
T Consensus 189 l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 237 (289)
T PRK13645 189 FINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGKVISIGSPFE 237 (289)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999864 899999999987 6889999999999999999987655
No 157
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-37 Score=311.50 Aligned_cols=189 Identities=24% Similarity=0.366 Sum_probs=158.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE---SLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~---~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+|||||||||||++|+|+.++. +.+|+|.++|+++.. ...++.++|++|+..+++.+||+||+.+....
T Consensus 33 ~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~ 112 (258)
T PRK14241 33 TAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKL 112 (258)
T ss_pred EEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHh
Confidence 5899999999999999999998642 257999999998732 23456799999999999999999999887543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLR----SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAF 148 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (602)
+. ..++++.+++++++++.+|+. +..++.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++.
T Consensus 113 ~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 185 (258)
T PRK14241 113 NG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKPG-----GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTL 185 (258)
T ss_pred cC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 21 123445567889999999984 3344444 459999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhc------CCceeecCCccc
Q 007474 149 KVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLS------HGQTVYSGTPAT 198 (602)
Q Consensus 149 ~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~------~G~iv~~G~~~~ 198 (602)
.+.+.|+++++ ++|||+++|++. ++.+++|++++|+ +|++++.|++++
T Consensus 186 ~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~ 239 (258)
T PRK14241 186 AIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGRLVEIDDTEK 239 (258)
T ss_pred HHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCCCceEEecCCHHH
Confidence 99999999964 689999999987 5889999999996 799999987665
No 158
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-37 Score=314.69 Aligned_cols=190 Identities=25% Similarity=0.400 Sum_probs=160.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCC-C
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLP-R 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~-~ 76 (602)
++|+|||||||||||++|+|++++. +|+|.++|+++.. ...++.++|++|++.+++.+||+||+.+......+ .
T Consensus 36 ~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~ 113 (265)
T PRK10253 36 TAIIGPNGCGKSTLLRTLSRLMTPA--HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLF 113 (265)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCC--CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccc
Confidence 4899999999999999999998754 5999999998743 22345689999999999999999999875311100 0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
....+..+++++++++.+||.+..++.+. .||||||||++||+||+.+|++++|||||+|||+.++..+.+.|++
T Consensus 114 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~ 188 (265)
T PRK10253 114 TRWRKEDEEAVTKAMQATGITHLADQSVD-----TLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSE 188 (265)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHhcCCcc-----cCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 01123345678999999999887777665 5999999999999999999999999999999999999999999999
Q ss_pred HHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 157 IAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 157 l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++ |.|||+++|++. ++.+++|++++|++|+++..|++++
T Consensus 189 l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (265)
T PRK10253 189 LNREKGYTLAAVLHDLN-QACRYASHLIALREGKIVAQGAPKE 230 (265)
T ss_pred HHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9874 899999999987 6899999999999999999998765
No 159
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=7.2e-37 Score=307.46 Aligned_cols=187 Identities=28% Similarity=0.486 Sum_probs=162.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc-cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR-LLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
++|+||||||||||+++|+|++++. +|+|.++|.++... ..++.++|++|++.+++.+|+.||+.+....+ ...
T Consensus 29 ~~l~G~nGsGKSTLl~~i~G~~~~~--~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~ 103 (237)
T TIGR00968 29 VALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHP 103 (237)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhc---CCC
Confidence 4899999999999999999998754 59999999987532 23456899999999999999999998865432 123
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007474 80 KKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK 159 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~ 159 (602)
.....++++++++.+++.+..++.++ .||+||+||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 104 ~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~ 178 (237)
T TIGR00968 104 KAKIKARVEELLELVQLEGLGDRYPN-----QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHD 178 (237)
T ss_pred HHHHHHHHHHHHHHcCCHhHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 34455778999999999887777665 4999999999999999999999999999999999999999999999987
Q ss_pred c-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 160 S-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+ |+|||++||++. ++.+++|++++|++|++++.|+.++
T Consensus 179 ~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 217 (237)
T TIGR00968 179 EVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDE 217 (237)
T ss_pred hcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHH
Confidence 6 899999999986 6889999999999999999988665
No 160
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-37 Score=310.09 Aligned_cols=192 Identities=23% Similarity=0.366 Sum_probs=156.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCC---CCCCceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRI---EKESLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~---~~~~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+||||||||||+++|+|+. ++.+.+|+|.++|+++.. ...++.++|++|++.+++ .||.||+.+....
T Consensus 32 ~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~ 110 (250)
T PRK14245 32 VAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRV 110 (250)
T ss_pred EEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHH
Confidence 5899999999999999999973 332247999999998753 134566899999988887 5999999886543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK 152 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (602)
+. ....++.+++++++++.+||.+...... +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+
T Consensus 111 ~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 187 (250)
T PRK14245 111 NG--VKDNAFIRQRVEETLKGAALWDEVKDKL-KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEE 187 (250)
T ss_pred cC--CCcHHHHHHHHHHHHHHcCCCcchhhhh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 21 1122344567899999999864221111 12334699999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 153 VLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 153 ~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.|++++ +++|||+++|+++ ++.++||++++|++|++++.|++++
T Consensus 188 ~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 188 LIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEECCHHH
Confidence 999995 4799999999987 5889999999999999999998765
No 161
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=7.9e-37 Score=312.53 Aligned_cols=188 Identities=22% Similarity=0.373 Sum_probs=159.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc---cccceEEEEccCCc--CCCCCCHHHHHHHHHHhcCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR---LLKIISAYVMQDEL--LFPMLTVEETLMFSAECRLP 75 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~---~~~~~~~yv~Q~~~--l~~~lTV~e~l~f~~~~~~~ 75 (602)
++|+|||||||||||++|+|+++|. +|+|.++|+++... ..++.++|++|++. +++.+||.|++.+......
T Consensus 42 ~~i~G~NGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~- 118 (267)
T PRK15112 42 LAIIGENGSGKSTLAKMLAGMIEPT--SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT- 118 (267)
T ss_pred EEEEcCCCCCHHHHHHHHhCCCCCC--CCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc-
Confidence 5899999999999999999998854 59999999987531 22346899999974 6788999999988654331
Q ss_pred CCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 007474 76 RSVSKKRKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVL 154 (602)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (602)
.....+..++++++++.+||. +..++.+. .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|
T Consensus 119 -~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l 192 (267)
T PRK15112 119 -DLEPEQREKQIIETLRQVGLLPDHASYYPH-----MLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLM 192 (267)
T ss_pred -CCCHHHHHHHHHHHHHHcCCChHHHhcCch-----hcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 223445567889999999994 55665554 59999999999999999999999999999999999999999999
Q ss_pred HHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 155 GEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 155 ~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++++ |.|||+++|+++ ++.++||++++|++|+++..|++++
T Consensus 193 ~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 236 (267)
T PRK15112 193 LELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQGEVVERGSTAD 236 (267)
T ss_pred HHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHH
Confidence 999875 899999999987 6888999999999999999887654
No 162
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-37 Score=308.74 Aligned_cols=193 Identities=25% Similarity=0.374 Sum_probs=157.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCC-CCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEK-ESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~-~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~ 76 (602)
++|+||||||||||+++|+|+.++ .+.+|+|.++|+++.. ...++.++|++|++.+++ .||+||+.+....+..
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~- 108 (246)
T PRK14269 31 TALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM- 108 (246)
T ss_pred EEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc-
Confidence 489999999999999999999753 3457999999998753 234567899999998887 6999999886543210
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
.....+.+++++++++.++|.+...... +...+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 109 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~ 187 (246)
T PRK14269 109 IKNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKE 187 (246)
T ss_pred ccChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 0122345567889999999953211111 123456999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 157 IAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 157 l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+++ |+|||+++|+++ ++.+.+|++++|++|+++..|++.+
T Consensus 188 ~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 227 (246)
T PRK14269 188 LSH-NLSMIMVTHNMQ-QGKRVADYTAFFHLGELIEFGESKE 227 (246)
T ss_pred HhC-CCEEEEEecCHH-HHHhhCcEEEEEECCEEEEECCHHH
Confidence 865 899999999987 5889999999999999999987655
No 163
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=7.6e-37 Score=339.53 Aligned_cols=190 Identities=24% Similarity=0.409 Sum_probs=164.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc----cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCC-
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR----LLKIISAYVMQDELLFPMLTVEETLMFSAECRLP- 75 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~----~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~- 75 (602)
++|+||||||||||||+|+|+++|. +|+|.++|+++... ..++.++||+|++.+++.+||+||+.+....+..
T Consensus 33 ~~l~G~NGsGKSTLl~~l~G~~~p~--~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 110 (501)
T PRK10762 33 MALVGENGAGKSTMMKVLTGIYTRD--AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRF 110 (501)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhcccccccc
Confidence 5899999999999999999998754 59999999987431 1245689999999999999999999886432211
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 007474 76 RSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLG 155 (602)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (602)
...+..+.+++++++++.+||.+..++.+++ |||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+
T Consensus 111 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 185 (501)
T PRK10762 111 GRIDWKKMYAEADKLLARLNLRFSSDKLVGE-----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIR 185 (501)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCCccCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHH
Confidence 1123444567889999999999888877765 99999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 156 EIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 156 ~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+++++|.|||+++|+++ ++.++||++++|++|+++..|++.+
T Consensus 186 ~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (501)
T PRK10762 186 ELKSQGRGIVYISHRLK-EIFEICDDVTVFRDGQFIAEREVAD 227 (501)
T ss_pred HHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEecCcCc
Confidence 99888999999999987 6889999999999999999998765
No 164
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-37 Score=308.84 Aligned_cols=182 Identities=30% Similarity=0.416 Sum_probs=155.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+||||||||||+++|+|+.+|. +|+|.++|.++.. ...++.++|++|++.+++ .||+||+.+....+ .
T Consensus 32 ~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~ 105 (241)
T PRK14250 32 YTIVGPSGAGKSTLIKLINRLIDPT--EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G 105 (241)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C
Confidence 4899999999999999999998754 5999999998743 234567899999988887 69999998753321 1
Q ss_pred CCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
..++++.++++.+||. +..++.+. .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus 106 ----~~~~~~~~~l~~~~l~~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 176 (241)
T PRK14250 106 ----EKNVDVEYYLSIVGLNKEYATRDVK-----NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVK 176 (241)
T ss_pred ----cHHHHHHHHHHHcCCCHHHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 1235788999999996 45565544 5999999999999999999999999999999999999999999999
Q ss_pred HHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 157 IAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 157 l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++ |+|||+++|+++ ++.+++|++++|++|+++..|++.+
T Consensus 177 ~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (241)
T PRK14250 177 LKNKMNLTVIWITHNME-QAKRIGDYTAFLNKGILVEYAKTYD 218 (241)
T ss_pred HHHhCCCEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 9874 999999999987 5888999999999999999887665
No 165
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=308.84 Aligned_cols=192 Identities=24% Similarity=0.388 Sum_probs=156.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCC--C-CCceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIE--K-ESLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~--~-~~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+|||||||||||++|+|+.+ + .+.+|+|.++|+++.. ...++.++|++|++.+++ .||+||+.+....
T Consensus 35 ~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~ 113 (253)
T PRK14242 35 TALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRV 113 (253)
T ss_pred EEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHH
Confidence 48999999999999999999864 1 1357999999998742 123567999999998888 5999999887543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK 152 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (602)
+. ....++.+++++++++.+|+.+...... +..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+
T Consensus 114 ~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 190 (253)
T PRK14242 114 NG--VKDKAYLAERVERSLRHAALWDEVKDRL-HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEE 190 (253)
T ss_pred cC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 21 1123445678899999999854221111 22344699999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 153 VLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 153 ~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.|+++++ ++|||+++|+++ ++.+++|++++|++|+++..|++++
T Consensus 191 ~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14242 191 LIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYMGKLIEVGPTEQ 234 (253)
T ss_pred HHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999954 799999999987 5889999999999999999887654
No 166
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=320.22 Aligned_cols=192 Identities=20% Similarity=0.339 Sum_probs=158.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCC--CCceeEEEECCEecccc---c----ccceEEEEccCCc--CCCCCCHHHHHHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEK--ESLKGTVTLNGAVLESR---L----LKIISAYVMQDEL--LFPMLTVEETLMFS 69 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~--~~~~G~i~~~g~~~~~~---~----~~~~~~yv~Q~~~--l~~~lTV~e~l~f~ 69 (602)
++|+|+||||||||+++|+|++++ .+.+|+|.++|+++... . .++.++||+|++. +.|.+||.+++...
T Consensus 36 ~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~ 115 (330)
T PRK15093 36 RGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQN 115 (330)
T ss_pred EEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHH
Confidence 589999999999999999999863 13579999999987431 1 1346899999975 68899999999764
Q ss_pred HHhcCCCC---CCHHHHHHHHHHHHHHcCCCcc---cccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 007474 70 AECRLPRS---VSKKRKRERVEALIDQLGLRSA---AKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLD 143 (602)
Q Consensus 70 ~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~---~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD 143 (602)
........ ....+.++++.++++.+||.+. .++. +..|||||||||+||+||+.+|++|+|||||+|||
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~-----p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD 190 (330)
T PRK15093 116 IPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSF-----PYELTEGECQKVMIAIALANQPRLLIADEPTNAME 190 (330)
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCC-----chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCC
Confidence 32111000 1123456788999999999753 3444 45699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 144 STSAFKVVKVLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 144 ~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+.++.++++.|+++.++ |.|||++||+++ .+.+++|++++|++|++++.|++++
T Consensus 191 ~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~~G~ive~g~~~~ 245 (330)
T PRK15093 191 PTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLYCGQTVETAPSKE 245 (330)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999874 999999999987 5889999999999999999998765
No 167
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-36 Score=310.59 Aligned_cols=188 Identities=27% Similarity=0.400 Sum_probs=157.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCC--C-CceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEK--E-SLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~--~-~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+||||||||||+++|+|+.++ . +.+|+|.++|+++.. ...++.++|++|+..+++ .||+||+.+....
T Consensus 42 ~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~ 120 (260)
T PRK10744 42 TAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRL 120 (260)
T ss_pred EEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhh
Confidence 489999999999999999999862 1 357999999998742 134567999999988887 7999999886543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLR----SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAF 148 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (602)
.. ..+..+.+++++++++.+++. +..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 121 ~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 193 (260)
T PRK10744 121 FE--KLSRAEMDERVEWALTKAALWNEVKDKLHQSG-----YSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTG 193 (260)
T ss_pred cC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcCC-----CCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHH
Confidence 21 234455567899999999984 3344443 459999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 149 KVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 149 ~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.+.|++++ ++.|||+++|++. ++.+++|++++|++|+++..|++++
T Consensus 194 ~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 194 RIEELITELK-QDYTVVIVTHNMQ-QAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999996 4789999999987 5888999999999999999987655
No 168
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-36 Score=311.69 Aligned_cols=186 Identities=25% Similarity=0.396 Sum_probs=160.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCc-CCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDEL-LFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~-l~~~lTV~e~l~f~~~~~~~~ 76 (602)
++|+|+||||||||+++|+|+.++. +|+|.++|+++.. ...++.++|++|++. .++..||.||+.+.....
T Consensus 36 ~~I~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~--- 110 (277)
T PRK13642 36 VSIIGQNGSGKSTTARLIDGLFEEF--EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ--- 110 (277)
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCC--CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---
Confidence 5899999999999999999999854 5999999998753 234567899999974 677789999998765422
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
...+.+..++++++++.+||.+..++.+. .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 185 (277)
T PRK13642 111 GIPREEMIKRVDEALLAVNMLDFKTREPA-----RLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHE 185 (277)
T ss_pred CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 23445556788999999999887777665 5999999999999999999999999999999999999999999999
Q ss_pred HHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 157 IAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 157 l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++ |.|||+++|++. ++. .+|++++|++|+++..|++++
T Consensus 186 l~~~~g~tiil~sH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~ 226 (277)
T PRK13642 186 IKEKYQLTVLSITHDLD-EAA-SSDRILVMKAGEIIKEAAPSE 226 (277)
T ss_pred HHHhcCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEeCCHHH
Confidence 9875 999999999987 454 699999999999999998765
No 169
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.5e-36 Score=298.48 Aligned_cols=173 Identities=34% Similarity=0.502 Sum_probs=148.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---c----cccceEEEEccCCcCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---R----LLKIISAYVMQDELLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~----~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~ 73 (602)
++|+||||||||||+++|+|++++ .+|+|.++|+++.. . ..++.++|++|++.+++.+||+||+.+.....
T Consensus 27 ~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~ 104 (206)
T TIGR03608 27 YAIIGESGSGKSTLLNIIGLLEKF--DSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK 104 (206)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc
Confidence 489999999999999999999875 45999999998531 1 23457899999999999999999999865432
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 007474 74 LPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKV 153 (602)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (602)
...+.+..++++++++.+||.+..++.+. .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.
T Consensus 105 ---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 176 (206)
T TIGR03608 105 ---KLSKKEKREKKKEALEKVGLNLKLKQKIY-----ELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDL 176 (206)
T ss_pred ---CCCHHHHHHHHHHHHHHcCchhhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHH
Confidence 23345556789999999999887777765 4999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhh
Q 007474 154 LGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFL 185 (602)
Q Consensus 154 l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 185 (602)
|++++++|.|||+++|++. ..+.+|++++|
T Consensus 177 l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 177 LLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred HHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 9999877999999999986 34689988764
No 170
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-36 Score=307.36 Aligned_cols=189 Identities=23% Similarity=0.388 Sum_probs=158.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCC--CC-CceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIE--KE-SLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~--~~-~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+||||||||||+++|+|+++ +. +.+|+|.++|+++.. ...++.++|++|+..+++.+||+||+.+....
T Consensus 33 ~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~ 112 (252)
T PRK14256 33 TAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKL 112 (252)
T ss_pred EEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHh
Confidence 48999999999999999999975 32 247999999998742 23466799999999999999999999876442
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLRS----AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAF 148 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (602)
. ......+.+++++++++.+++.+ ..++. ++.||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 113 ~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~ 185 (252)
T PRK14256 113 N--GRVNRSEADEIVESSLKRVALWDEVKDRLKSN-----AMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTL 185 (252)
T ss_pred c--CCCCHHHHHHHHHHHHHHcCCchhhhHHhhCC-----cCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 2 11233445567899999999864 23333 4469999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 149 KVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 149 ~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.+.|+++++ ++|||+++|+++ ++.++||++++|++|+++..|++++
T Consensus 186 ~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14256 186 KIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYMGDLVECGETKK 233 (252)
T ss_pred HHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999976 689999999987 6889999999999999999998665
No 171
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.4e-36 Score=307.48 Aligned_cols=185 Identities=26% Similarity=0.421 Sum_probs=159.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+||||||||||+++|+|+.+ . +|+|.++|+++.. ...++.++|++|++.+++.+||.||+.+.... .
T Consensus 25 ~~l~G~nGsGKSTLl~~l~Gl~~--~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~----~ 97 (248)
T PRK03695 25 LHLVGPNGAGKSTLLARMAGLLP--G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPD----K 97 (248)
T ss_pred EEEECCCCCCHHHHHHHHcCCCC--C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCcc----C
Confidence 48999999999999999999975 2 6999999998753 22345589999998888889999999875321 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhh-------CCcEEEEeCCCCCCCHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIH-------DPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~-------~p~lllLDEPtsgLD~~~~~~i 150 (602)
...++..++++++++.+||.+..++.++ .||||||||++||++|+. +|++|+|||||+|||+.++..+
T Consensus 98 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l 172 (248)
T PRK03695 98 TRTEAVASALNEVAEALGLDDKLGRSVN-----QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAAL 172 (248)
T ss_pred CCcHHHHHHHHHHHHHcCCHhHhcCCcc-----cCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHH
Confidence 2234456788999999999887777665 499999999999999997 6799999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|++++++|+|||+++|+++ ++.+++|++++|++|+++..|+.++
T Consensus 173 ~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 219 (248)
T PRK03695 173 DRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDE 219 (248)
T ss_pred HHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999878999999999987 6889999999999999999887654
No 172
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-36 Score=310.02 Aligned_cols=189 Identities=26% Similarity=0.398 Sum_probs=157.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE---SLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~---~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+|||||||||||++|+|+.++. +.+|+|.++|+++.. ...++.++|++|++.+++. ||.||+.+....
T Consensus 48 ~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~ 126 (267)
T PRK14235 48 TAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRI 126 (267)
T ss_pred EEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHh
Confidence 5899999999999999999998641 357999999998742 1345678999999888885 999999986543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLRS----AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAF 148 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (602)
+.. ..+..+.+++++++++.+||.+ ..++. ++.||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 127 ~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 200 (267)
T PRK14235 127 HGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEP-----GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATA 200 (267)
T ss_pred ccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHH
Confidence 210 1123445677899999999964 23333 3469999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 149 KVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 149 ~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.+.|+++++ +.|||+++|+++ .+.+++|++++|++|+++..|++++
T Consensus 201 ~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 248 (267)
T PRK14235 201 KVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHLGNLVEVGDTEK 248 (267)
T ss_pred HHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999975 789999999987 5889999999999999999987654
No 173
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-36 Score=307.08 Aligned_cols=188 Identities=24% Similarity=0.358 Sum_probs=157.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE---SLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~---~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+||||||||||+++|+|+.++. +.+|+|.++|+++.. ...++.++|++|++.+++ +|++||+.|....
T Consensus 33 ~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~ 111 (251)
T PRK14270 33 TALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRI 111 (251)
T ss_pred EEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHh
Confidence 4899999999999999999997642 257999999998743 123566899999998887 8999999886543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLRS----AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAF 148 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (602)
.. .....+.+++++++++.+++.+ ..++. ++.||||||||++||++|+.+|++++|||||+|||+.++.
T Consensus 112 ~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~ 184 (251)
T PRK14270 112 HG--IKDKKELDKIVEWALKKAALWDEVKDDLKKS-----ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTL 184 (251)
T ss_pred cC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 21 1123445667889999998842 33443 3469999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 149 KVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 149 ~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.+.|+++++ ++|||+++|+++ ++.+++|++++|++|++++.|++++
T Consensus 185 ~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (251)
T PRK14270 185 KIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLMGDLIEFNKTEK 232 (251)
T ss_pred HHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEECCeEEEeCCHHH
Confidence 99999999976 689999999987 6889999999999999999998765
No 174
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-36 Score=306.88 Aligned_cols=193 Identities=24% Similarity=0.404 Sum_probs=156.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCC--CC-CceeEEEECCEecccc-----cccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIE--KE-SLKGTVTLNGAVLESR-----LLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~--~~-~~~G~i~~~g~~~~~~-----~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+||||||||||+++|+|+.+ +. +.+|+|.++|+++... ..++.++|++|++.+++. ||.||+.+....
T Consensus 34 ~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~ 112 (251)
T PRK14244 34 TAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKL 112 (251)
T ss_pred EEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHh
Confidence 48999999999999999999975 22 3579999999987421 245678999999988886 999999886433
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK 152 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (602)
+ .......+.+++++++++.+||.+...+.. +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+
T Consensus 113 ~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 190 (251)
T PRK14244 113 H-GLAKNKKKLDEIVEKSLTSVGLWEELGDRL-KDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIEN 190 (251)
T ss_pred c-CCCCCHHHHHHHHHHHHHHcCCCchhhhHh-hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 2 111123344567889999999975221111 12334699999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 153 VLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 153 ~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.|++++ +|+|||+++|+++ ++.+++|++++|++|++++.|++++
T Consensus 191 ~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (251)
T PRK14244 191 LIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQSGRIVEYNTTQE 234 (251)
T ss_pred HHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEECCEEEEeCCHHH
Confidence 999996 4899999999987 6888999999999999999887654
No 175
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-36 Score=311.51 Aligned_cols=192 Identities=28% Similarity=0.390 Sum_probs=159.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCC------ceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKES------LKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAE 71 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~------~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~ 71 (602)
++|+||||||||||+|+|+|++++.. .+|+|.++|+++.. ...++.++|++|++.+++.+||+||+.+...
T Consensus 30 ~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~ 109 (272)
T PRK13547 30 TALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRY 109 (272)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhccc
Confidence 58999999999999999999987540 26999999998743 2334568999999876667999999987532
Q ss_pred hcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHh---------hCCcEEEEeCCCCC
Q 007474 72 CRLP-RSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDII---------HDPILLFLDEPTSG 141 (602)
Q Consensus 72 ~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~---------~~p~lllLDEPtsg 141 (602)
.... ......+..++++++++.+|+.+..++.++ .|||||||||+||++|+ .+|++|+|||||+|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~ 184 (272)
T PRK13547 110 PHARRAGALTHRDGEIAWQALALAGATALVGRDVT-----TLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAA 184 (272)
T ss_pred ccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCcccc
Confidence 1100 011113445678999999999887776655 59999999999999999 59999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 142 LDSTSAFKVVKVLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 142 LD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
||+.++..+.+.|++++++ |+|||+++|+++ ++.+++|++++|++|+++..|++++
T Consensus 185 LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (272)
T PRK13547 185 LDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLADGAIVAHGAPAD 241 (272)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCeEEEecCHHH
Confidence 9999999999999999876 899999999987 5888999999999999999998665
No 176
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-36 Score=338.08 Aligned_cols=190 Identities=24% Similarity=0.375 Sum_probs=163.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc----cccceEEEEccCCcCCCCCCHHHHHHHHHHhcC-C
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR----LLKIISAYVMQDELLFPMLTVEETLMFSAECRL-P 75 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~----~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~-~ 75 (602)
++|+||||||||||||+|+|+.+| .+|+|.++|+++... ..++.++||+|++.+++.+||+||+.+...... .
T Consensus 34 ~~liG~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 111 (510)
T PRK09700 34 HALLGENGAGKSTLMKVLSGIHEP--TKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKV 111 (510)
T ss_pred EEEECCCCCCHHHHHHHHcCCcCC--CccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhcccccccc
Confidence 589999999999999999999875 459999999987532 123468999999999999999999987532110 0
Q ss_pred CC---CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 007474 76 RS---VSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK 152 (602)
Q Consensus 76 ~~---~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (602)
.. .+..+.+++++++++.+||.+..++.+++ |||||||||+||++|+.+|++|||||||+|||+.++..+.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~ 186 (510)
T PRK09700 112 CGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFL 186 (510)
T ss_pred ccccccCHHHHHHHHHHHHHHcCCCCCcccchhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 01 12345567899999999999888877764 99999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 153 VLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 153 ~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.|++++++|+|||+++|++. ++.++||++++|++|++++.|++++
T Consensus 187 ~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 187 IMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred HHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEeeecchhh
Confidence 99999888999999999987 6889999999999999999998776
No 177
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-36 Score=307.71 Aligned_cols=188 Identities=26% Similarity=0.398 Sum_probs=157.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCC--C-CceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEK--E-SLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~--~-~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+||||||||||+++|+|+.++ . +.+|+|.++|+++.. ...++.++|++|++.+++. ||+||+.+....
T Consensus 41 ~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~ 119 (259)
T PRK14274 41 TAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRI 119 (259)
T ss_pred EEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHh
Confidence 589999999999999999999863 1 147999999998742 1345678999999988886 999999886543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLRS----AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAF 148 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (602)
+ ....+++.+++++++++.+++.+ ..++. .++||||||||++||++|+.+|++++|||||+|||+.++.
T Consensus 120 ~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~-----~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~ 192 (259)
T PRK14274 120 H--GTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQ-----ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTR 192 (259)
T ss_pred c--CCCCHHHHHHHHHHHHHHcCCchhhhhhhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 2 11133455667889999999854 23343 3469999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 149 KVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 149 ~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.+.|+++++ ++|+|+++|+++ ++.+++|++++|++|+++..|++++
T Consensus 193 ~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 240 (259)
T PRK14274 193 KIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYMGELVECNDTNK 240 (259)
T ss_pred HHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999965 799999999987 6889999999999999999998765
No 178
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-36 Score=305.99 Aligned_cols=188 Identities=25% Similarity=0.372 Sum_probs=155.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCC--CC-CceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIE--KE-SLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~--~~-~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+||||||||||+++|+|+.+ |. +.+|+|.++|+++.. ...++.++||+|++.+++ .||+||+.+....
T Consensus 34 ~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~ 112 (252)
T PRK14239 34 TALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRL 112 (252)
T ss_pred EEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHH
Confidence 48999999999999999999854 31 147999999998742 124567999999998887 7999999886543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLRS----AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAF 148 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (602)
+ + .......+++++++++.+++.+ ..++. ++.||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 113 ~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 185 (252)
T PRK14239 113 K-G-IKDKQVLDEAVEKSLKGASIWDEVKDRLHDS-----ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAG 185 (252)
T ss_pred c-C-CCcHHHHHHHHHHHHHHcCCchhHHHHHhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHH
Confidence 2 1 1123334567888999998753 23333 4469999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 149 KVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 149 ~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.+.|+++++ ++|||+++|+++ ++.+++|++++|++|++++.|++.+
T Consensus 186 ~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 186 KIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999965 689999999987 6889999999999999999998665
No 179
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-36 Score=304.71 Aligned_cols=189 Identities=23% Similarity=0.373 Sum_probs=157.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCC---ceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKES---LKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~---~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+||||||||||+|+|+|++++.+ .+|+|.++|+++.. ...++.++|++|++.+++.+|+.||+.+....
T Consensus 33 ~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~ 112 (252)
T PRK14272 33 NALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKL 112 (252)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHh
Confidence 48999999999999999999987542 37999999998742 13455689999999999999999999876542
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLR----SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAF 148 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (602)
. ....+++..++++++++.+++. +..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 113 ~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~ 185 (252)
T PRK14272 113 A--GIRDRDHLMEVAERSLRGAALWDEVKDRLKTPA-----TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTA 185 (252)
T ss_pred c--CCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 2 1112334456777888888764 3334444 459999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 149 KVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 149 ~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.+.|+++++ ++|||+++|++. ++.+++|++++|++|++++.|++++
T Consensus 186 ~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 186 RIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999975 799999999987 6888999999999999999998665
No 180
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-36 Score=304.24 Aligned_cols=188 Identities=26% Similarity=0.426 Sum_probs=156.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE---SLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~---~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+||||||||||+++|+|+.++. +.+|+|.++|+++.. ...++.++|++|++.+++ +||.||+.+....
T Consensus 32 ~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~ 110 (250)
T PRK14240 32 TALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRT 110 (250)
T ss_pred EEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHh
Confidence 4899999999999999999987532 147999999998752 124567899999988888 8999999986543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLRS----AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAF 148 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (602)
+. ..+.++.+++++++++.+++.+ ..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 111 ~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~ 183 (250)
T PRK14240 111 HG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKSA-----LGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTL 183 (250)
T ss_pred cC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcCC-----CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 21 1123445678889999998753 334444 459999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 149 KVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 149 ~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.+.|+++++ ++|||+++|+++ ++.+++|++++|++|+++..|++++
T Consensus 184 ~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 184 KIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999964 799999999986 6889999999999999999987655
No 181
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.6e-36 Score=334.26 Aligned_cols=192 Identities=23% Similarity=0.389 Sum_probs=162.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccccc----ccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRL----LKIISAYVMQDELLFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~----~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~ 76 (602)
++|+|||||||||||++|+|+.++.+.+|+|.++|+++.... .++.++||+|++.+++.+||.||+.+........
T Consensus 30 ~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 109 (500)
T TIGR02633 30 VGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPG 109 (500)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccc
Confidence 589999999999999999999875335799999999875321 2356899999999999999999998864332111
Q ss_pred -CCCHHHHHHHHHHHHHHcCCCccc-ccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 007474 77 -SVSKKRKRERVEALIDQLGLRSAA-KTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVL 154 (602)
Q Consensus 77 -~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (602)
....++.+++++++++.+||.+.. ++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 184 (500)
T TIGR02633 110 GRMAYNAMYLRAKNLLRELQLDADNVTRPVG-----DYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDII 184 (500)
T ss_pred cccCHHHHHHHHHHHHHHcCCCCCcccCchh-----hCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 123344567889999999998654 44455 49999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 155 GEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 155 ~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++++|+|||+++|++. ++.++||++++|++|+++..|++.+
T Consensus 185 ~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 185 RDLKAHGVACVYISHKLN-EVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeCCeEeeecCccc
Confidence 999888999999999987 6889999999999999999988765
No 182
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-36 Score=304.66 Aligned_cols=192 Identities=22% Similarity=0.403 Sum_probs=157.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE---SLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~---~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+|||||||||||++|+|+.++. +.+|+|.++|.++.. ...++.++|++|++.+++ .||+||+.+....
T Consensus 32 ~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~ 110 (250)
T PRK14262 32 TAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRI 110 (250)
T ss_pred EEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHH
Confidence 4899999999999999999998641 257999999998742 123567899999998887 8999999886543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK 152 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (602)
.. ...+.+.+++++++++.+|+.+..+.. .+..+++||||||||++||++|+.+|++|+|||||+|||+.++..+.+
T Consensus 111 ~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~ 187 (250)
T PRK14262 111 HG--VKSKHKLDRIVEESLKKAALWDEVKSE-LNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEK 187 (250)
T ss_pred cC--CCcHHHHHHHHHHHHHHcCCCchhHHH-HhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHH
Confidence 21 112334556788999999986421111 123345699999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 153 VLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 153 ~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.|+++++ ++|||+++|+++ ++.+++|++++|++|+++..|++++
T Consensus 188 ~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14262 188 LLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYRGELIEYGPTRE 231 (250)
T ss_pred HHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999975 789999999987 5889999999999999999997665
No 183
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-36 Score=304.19 Aligned_cols=192 Identities=26% Similarity=0.418 Sum_probs=156.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEeccc----ccccceEEEEccCCcCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE---SLKGTVTLNGAVLES----RLLKIISAYVMQDELLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~---~~~G~i~~~g~~~~~----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~ 73 (602)
++|+||||||||||+++|+|+.++. +.+|+|.++|.++.. ...++.++|++|++.+++ .||.||+.+.....
T Consensus 32 ~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~ 110 (249)
T PRK14253 32 TALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ 110 (249)
T ss_pred EEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc
Confidence 4899999999999999999998753 357999999998742 234567899999998887 79999998764322
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 007474 74 LPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKV 153 (602)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (602)
....+...+++++++++.+++.+...... +..+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.
T Consensus 111 --~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ 187 (249)
T PRK14253 111 --GIKDKKVLDEVVERSLRGAALWDEVKDRL-KSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEEL 187 (249)
T ss_pred --CCCchHHHHHHHHHHHHHcCCchhhhHHh-hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 11123344567888999998753211111 123346999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 154 LGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 154 l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
|+++++ ++|||+++|++. ++.+++|++++|++|+++..|++++
T Consensus 188 l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (249)
T PRK14253 188 MEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLMGELVEHDDTQV 230 (249)
T ss_pred HHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999976 589999999987 6899999999999999999987654
No 184
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-36 Score=333.65 Aligned_cols=190 Identities=21% Similarity=0.332 Sum_probs=162.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc----cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR----LLKIISAYVMQDELLFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~----~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~ 76 (602)
++|+||||||||||+++|+|+.+|. +|+|.++|+++... ..++.++||+|+..+++.+||+||+.+........
T Consensus 27 ~~liG~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 104 (491)
T PRK10982 27 HALMGENGAGKSTLLKCLFGIYQKD--SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGM 104 (491)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCC--ceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccccccccc
Confidence 4899999999999999999998754 69999999987531 23456899999998999999999998753211111
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
.....+..++++++++.+|+.+..++.+++ |||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++
T Consensus 105 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 179 (491)
T PRK10982 105 FVDQDKMYRDTKAIFDELDIDIDPRAKVAT-----LSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRK 179 (491)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCccCchhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 123344557889999999998877777664 999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 157 IAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 157 l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++|+|||+++|+++ ++.++||++++|++|+++..|++.+
T Consensus 180 l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 220 (491)
T PRK10982 180 LKERGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAG 220 (491)
T ss_pred HHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhh
Confidence 9888999999999987 6889999999999999999998765
No 185
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3.1e-36 Score=335.17 Aligned_cols=183 Identities=27% Similarity=0.455 Sum_probs=160.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc---c-ccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR---L-LKIISAYVMQDELLFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~---~-~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~ 76 (602)
++|+||||||||||||+|+|+++|. +|+|.++|+++... . .++.++||+|++.+++.+||+||+.+...
T Consensus 40 ~~liG~NGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~----- 112 (510)
T PRK15439 40 HALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP----- 112 (510)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc-----
Confidence 4899999999999999999998754 59999999987532 1 23458999999999999999999987532
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
...+.+++++++++.+||.+..++.+++ |||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++
T Consensus 113 --~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 185 (510)
T PRK15439 113 --KRQASMQKMKQLLAALGCQLDLDSSAGS-----LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRE 185 (510)
T ss_pred --cchHHHHHHHHHHHHcCCCccccCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 1134457889999999999888877764 999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 157 IAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 157 l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++|+|||+++|+++ ++.++||++++|++|++++.|++++
T Consensus 186 ~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (510)
T PRK15439 186 LLAQGVGIVFISHKLP-EIRQLADRISVMRDGTIALSGKTAD 226 (510)
T ss_pred HHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecChHH
Confidence 9888999999999987 5889999999999999999998765
No 186
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-36 Score=280.26 Aligned_cols=188 Identities=28% Similarity=0.468 Sum_probs=165.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc----------------ccccceEEEEccCCcCCCCCCHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES----------------RLLKIISAYVMQDELLFPMLTVEE 64 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~----------------~~~~~~~~yv~Q~~~l~~~lTV~e 64 (602)
+.|+|.|||||||+|+||.=+.+|. .|.|.+||+.+.- ...|.+.++|+|+.++++++||.|
T Consensus 35 isIIGsSGSGKSTfLRCiN~LE~P~--~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLe 112 (256)
T COG4598 35 ISIIGSSGSGKSTFLRCINFLEKPS--AGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLE 112 (256)
T ss_pred EEEecCCCCchhHHHHHHHhhcCCC--CceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHH
Confidence 4799999999999999999887754 5999999987621 123445799999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 007474 65 TLMFSAECRLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDS 144 (602)
Q Consensus 65 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~ 144 (602)
|+.-+----+ ..++.+..++.+.+|+.+|+.+.+|.+.. .|||||+||++|||||+.+|+++++|||||.|||
T Consensus 113 NViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~YP~-----~LSGGQQQR~aIARaLameP~vmLFDEPTSALDP 185 (256)
T COG4598 113 NVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADAYPA-----HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDP 185 (256)
T ss_pred HHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhcCcc-----ccCchHHHHHHHHHHHhcCCceEeecCCcccCCH
Confidence 9975432111 46788889999999999999998887765 4999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 145 TSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 145 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+-.-++++.+++|+++|+|.+++||.+. -.-+..+++++|++|.+-+.|+|++
T Consensus 186 ElVgEVLkv~~~LAeEgrTMv~VTHEM~-FAR~Vss~v~fLh~G~iEE~G~P~q 238 (256)
T COG4598 186 ELVGEVLKVMQDLAEEGRTMVVVTHEMG-FARDVSSHVIFLHQGKIEEEGPPEQ 238 (256)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEeeehh-HHHhhhhheEEeecceecccCChHH
Confidence 9999999999999999999999999987 4778899999999999999999877
No 187
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-36 Score=304.81 Aligned_cols=193 Identities=27% Similarity=0.432 Sum_probs=164.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCC-C-C-CceeEEEECCEeccc---c---c-ccceEEEEccCC--cCCCCCCHHHHHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIE-K-E-SLKGTVTLNGAVLES---R---L-LKIISAYVMQDE--LLFPMLTVEETLMF 68 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~-~-~-~~~G~i~~~g~~~~~---~---~-~~~~~~yv~Q~~--~l~~~lTV~e~l~f 68 (602)
+||+|.||||||||.++|.|+++ + . ..+|+|.++|+++.. + + ..+.+++|+|++ .|.|.+||.+.+.-
T Consensus 34 lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E 113 (316)
T COG0444 34 LGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAE 113 (316)
T ss_pred EEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHH
Confidence 58999999999999999999997 3 2 357999999997632 1 1 234689999995 68999999999877
Q ss_pred HHHhcCCCCC-CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 007474 69 SAECRLPRSV-SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSA 147 (602)
Q Consensus 69 ~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~ 147 (602)
..+... .. .+++.++++.++|+.+||.+... +-+.++.+|||||||||.||.||+.+|++||.||||++||...+
T Consensus 114 ~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~Q 189 (316)
T COG0444 114 VLRLHG--KGLSKKEAKERAIELLELVGIPDPER--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQ 189 (316)
T ss_pred HHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHH--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHH
Confidence 665432 22 45677889999999999986422 22456778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 148 FKVVKVLGEIAK-SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 148 ~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+|+++|+++++ .|.++|++|||+. -+.++||||+||..|++|+.|++++
T Consensus 190 aqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMYaG~iVE~g~~~~ 240 (316)
T COG0444 190 AQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMYAGRIVEEGPVEE 240 (316)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEECcEEEEeCCHHH
Confidence 999999999997 6999999999997 5999999999999999999998776
No 188
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=5.1e-36 Score=297.91 Aligned_cols=179 Identities=28% Similarity=0.528 Sum_probs=155.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc------cccceEEEEccCCcCCCCCCHHHHHHHHHHhcC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR------LLKIISAYVMQDELLFPMLTVEETLMFSAECRL 74 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~------~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~ 74 (602)
++|+||||||||||+++|+|.+++ .+|+|.++|+++... ..++.++|++|++.+++.+|+.||+.+......
T Consensus 34 ~~I~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~ 111 (220)
T TIGR02982 34 VILTGPSGSGKTTLLTLIGGLRSV--QEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP 111 (220)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc
Confidence 589999999999999999999875 469999999987421 245679999999999999999999998654321
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 007474 75 PRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVL 154 (602)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (602)
....++.+++++++++.+||.+..++.+. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus 112 --~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l 184 (220)
T TIGR02982 112 --NLSYQEARERARAMLEAVGLGDHLDYYPH-----NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELM 184 (220)
T ss_pred --CCCHHHHHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 13445566789999999999887777664 59999999999999999999999999999999999999999999
Q ss_pred HHHHh-cCcEEEEEEcCCcHHHHHHhhHHhhhcCCce
Q 007474 155 GEIAK-SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQT 190 (602)
Q Consensus 155 ~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 190 (602)
+++++ .|+|||+++|+++ +.+++|++++|++|++
T Consensus 185 ~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 185 QKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 99986 5899999999985 5689999999999975
No 189
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-36 Score=306.24 Aligned_cols=192 Identities=23% Similarity=0.328 Sum_probs=158.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE---SLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~---~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+|||||||||||++|+|++++. +.+|+|.++|+++.. ...++.++|++|++.+++ .||+||+.+....
T Consensus 49 ~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~ 127 (267)
T PRK14237 49 TALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALER 127 (267)
T ss_pred EEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHh
Confidence 4899999999999999999998642 457999999998742 123567899999988887 5999999886542
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK 152 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (602)
. ....+.+.++++.++++.++|.+..+... +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+
T Consensus 128 ~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 204 (267)
T PRK14237 128 A--GVKDKKVLDEIVETSLKQAALWDQVKDDL-HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEE 204 (267)
T ss_pred c--CCCCHHHHHHHHHHHHHHcCCCchhhhhh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 1 11234455678899999999864222222 23345699999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 153 VLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 153 ~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.|++++ ++.|||+++|+++ ++.++||++++|++|+++..|++.+
T Consensus 205 ~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 205 TMFELK-KNYTIIIVTHNMQ-QAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999996 4789999999987 6889999999999999999998765
No 190
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=4.5e-36 Score=304.80 Aligned_cols=187 Identities=24% Similarity=0.357 Sum_probs=155.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCC--ceeEEEECCEecccccc-cceEEEEccCCc--CCCCCCHHHHHHHHHHhcCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKES--LKGTVTLNGAVLESRLL-KIISAYVMQDEL--LFPMLTVEETLMFSAECRLP 75 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~--~~G~i~~~g~~~~~~~~-~~~~~yv~Q~~~--l~~~lTV~e~l~f~~~~~~~ 75 (602)
++|+||||||||||+++|+|+.++.. .+|+|.++|++++.... ++.++||+|++. +.+.+|+.+++.+.+...
T Consensus 32 ~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~-- 109 (254)
T PRK10418 32 LALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL-- 109 (254)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHc--
Confidence 48999999999999999999987511 56999999998754322 356899999974 556789999987654322
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCc---ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 007474 76 RSVSKKRKRERVEALIDQLGLRS---AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK 152 (602)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~---~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (602)
... ..++++.++++.++|.+ ..++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+
T Consensus 110 -~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~ 181 (254)
T PRK10418 110 -GKP--ADDATLTAALEAVGLENAARVLKLYPF-----EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILD 181 (254)
T ss_pred -CCC--hHHHHHHHHHHHcCCCChhhhhhcCCc-----ccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHH
Confidence 111 23367899999999976 3455544 599999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 153 VLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 153 ~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.|++++++ |+|||+++|+++ ++.+++|++++|++|+++..|++++
T Consensus 182 ~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 227 (254)
T PRK10418 182 LLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSHGRIVEQGDVET 227 (254)
T ss_pred HHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999764 899999999987 5888999999999999999987655
No 191
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-36 Score=304.71 Aligned_cols=188 Identities=26% Similarity=0.391 Sum_probs=157.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC-C--ceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE-S--LKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~-~--~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+|+||||||||+|+|+|+.++. + .+|+|.++|+++.. ...++.++|++|++.+++ .||+||+.+....
T Consensus 36 ~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~ 114 (259)
T PRK14260 36 TAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRI 114 (259)
T ss_pred EEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHH
Confidence 5899999999999999999998753 2 47999999998742 123556899999998888 8999999876543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLR----SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAF 148 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (602)
+. ..++.+.+++++++++.+|+. +..++. ++.||||||||++||++|+.+|++++|||||+|||+.++.
T Consensus 115 ~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 187 (259)
T PRK14260 115 SA--KLPQADLDEIVESALKGAALWQEVKDKLNKS-----ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATM 187 (259)
T ss_pred hc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 21 123344556788999999984 334443 4469999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhc-----CCceeecCCccc
Q 007474 149 KVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLS-----HGQTVYSGTPAT 198 (602)
Q Consensus 149 ~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~-----~G~iv~~G~~~~ 198 (602)
.+.+.|+++++ ++|||+++|+++ ++.+++|++++|+ +|++++.|++.+
T Consensus 188 ~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~ 240 (259)
T PRK14260 188 KVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQMVEFGVTTQ 240 (259)
T ss_pred HHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceEEEeCCHHH
Confidence 99999999975 689999999997 6899999999997 599999998765
No 192
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-36 Score=307.39 Aligned_cols=186 Identities=25% Similarity=0.378 Sum_probs=153.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE---SLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~---~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+|||||||||||++|+|++++. +.+|+|.++|+++.. ...++.++|++|++.+++. ||+||+.+.+..
T Consensus 42 ~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~ 120 (269)
T PRK14259 42 TALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARI 120 (269)
T ss_pred EEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhh
Confidence 4899999999999999999997631 357999999998631 2345568999999988885 999999987643
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLR----SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAF 148 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (602)
+ ... .+.+++++++++.+++. +..++. ++.||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 121 ~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~ 191 (269)
T PRK14259 121 N---GYT-GDMDELVERSLRKAAVWDECKDKLNES-----GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTL 191 (269)
T ss_pred c---CCc-HHHHHHHHHHHHHhCCcchhhhhhCCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 2 122 23456778889998874 233443 3469999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcC-----------CceeecCCccc
Q 007474 149 KVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSH-----------GQTVYSGTPAT 198 (602)
Q Consensus 149 ~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-----------G~iv~~G~~~~ 198 (602)
.+.+.|+++++ +.|||+++|++. ++.++||++++|++ |++++.|++.+
T Consensus 192 ~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~ 250 (269)
T PRK14259 192 KIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKK 250 (269)
T ss_pred HHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEeccccccccccccceEEEeCCHHH
Confidence 99999999964 789999999987 68999999999996 56899887765
No 193
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-36 Score=285.64 Aligned_cols=187 Identities=31% Similarity=0.475 Sum_probs=160.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
+||+||||||||||||.|+|.+.|+ +|++.+||.+++. ....+..+.++|+..+-...||+|.+.++.. |..
T Consensus 30 ~ailGPNGAGKSTlLk~LsGel~p~--~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~---p~~ 104 (259)
T COG4559 30 LAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRI---PHR 104 (259)
T ss_pred EEEECCCCccHHHHHHHhhCccCCC--CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccc---ccc
Confidence 4899999999999999999998865 5999999998864 2344556899999887555799999998743 432
Q ss_pred CCH--HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHH
Q 007474 78 VSK--KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIH------DPILLFLDEPTSGLDSTSAFK 149 (602)
Q Consensus 78 ~~~--~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~------~p~lllLDEPtsgLD~~~~~~ 149 (602)
... .+..+.++++|...++.+.+.+..- .|||||||||.+||.|+. ++++||||||||.||...+..
T Consensus 105 ~g~~~~e~~~i~~~ala~~d~~~la~R~y~-----~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~ 179 (259)
T COG4559 105 SGREPEEDERIAAQALAATDLSGLAGRDYR-----TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHH 179 (259)
T ss_pred cCCCchhhHHHHHHHHHHcChhhhhccchh-----hcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHH
Confidence 222 2556678999999999998876553 599999999999999985 446999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 150 VVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 150 i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++++.|+++++|..|+++.||.+ -...+||||++|++||++..|++.+
T Consensus 180 tl~laR~la~~g~~V~~VLHDLN-LAA~YaDrivll~~Grv~a~g~p~~ 227 (259)
T COG4559 180 TLRLARQLAREGGAVLAVLHDLN-LAAQYADRIVLLHQGRVIASGSPQD 227 (259)
T ss_pred HHHHHHHHHhcCCcEEEEEccch-HHHHhhheeeeeeCCeEeecCCHHH
Confidence 99999999999999999999998 5889999999999999999999987
No 194
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=7.6e-36 Score=303.80 Aligned_cols=188 Identities=24% Similarity=0.372 Sum_probs=156.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEe-----cccc---c----ccceEEEEccCC--cCCCCCCHHHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAV-----LESR---L----LKIISAYVMQDE--LLFPMLTVEETL 66 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~-----~~~~---~----~~~~~~yv~Q~~--~l~~~lTV~e~l 66 (602)
++|+||||||||||+++|+|+++|. +|+|.++|++ +... . .++.++|++|++ .+++.+|+.||+
T Consensus 35 ~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i 112 (258)
T PRK11701 35 LGIVGESGSGKTTLLNALSARLAPD--AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNI 112 (258)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHH
Confidence 4899999999999999999998754 5999999987 5321 1 234689999997 467888999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 007474 67 MFSAECRLPRSVSKKRKRERVEALIDQLGLRS-AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDST 145 (602)
Q Consensus 67 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~ 145 (602)
.+...... .....+.+++++++++.+++.+ ..++.++ .||||||||++||++|+.+|++|+|||||+|||+.
T Consensus 113 ~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~ 185 (258)
T PRK11701 113 GERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDLPT-----TFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVS 185 (258)
T ss_pred HHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCCCc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 76432111 1122345667899999999974 5565554 59999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 146 SAFKVVKVLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 146 ~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++..+.+.|++++++ |.|||+++|++. .+.+++|++++|++|++++.|++++
T Consensus 186 ~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 238 (258)
T PRK11701 186 VQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVMKQGRVVESGLTDQ 238 (258)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999875 899999999987 5788999999999999999997665
No 195
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.6e-36 Score=304.91 Aligned_cols=182 Identities=29% Similarity=0.495 Sum_probs=145.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+||||||||||+++|+|+.++. +|+|.++|+++.. ...++.++|++|++.+++ .||.||+.+... .
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~ 102 (237)
T cd03252 31 VGIVGRSGSGKSTLTKLIQRFYVPE--NGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----G 102 (237)
T ss_pred EEEECCCCCCHHHHHHHHhcCcCCC--CCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----C
Confidence 4899999999999999999998754 5999999998643 234567899999988775 699999976431 1
Q ss_pred CCHHHHH-----HHHHHHHHHc--CCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 78 VSKKRKR-----ERVEALIDQL--GLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 78 ~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
....+.. ....++++.+ ++.+..+.. ++.|||||||||+||++|+.+|++++|||||+|||+.++..+
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l 177 (237)
T cd03252 103 MSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----GAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAI 177 (237)
T ss_pred CCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHH
Confidence 1111111 1223445554 444444443 346999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|+++++ |+|||+++|+++ ++ +.+|++++|++|++++.|++++
T Consensus 178 ~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~~~~~~ 222 (237)
T cd03252 178 MRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEKGRIVEQGSHDE 222 (237)
T ss_pred HHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEEcCHHH
Confidence 999999974 899999999997 45 5699999999999999998665
No 196
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.9e-36 Score=290.77 Aligned_cols=156 Identities=45% Similarity=0.769 Sum_probs=137.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+|||||||||||++|+|+....+.+|+|.++|+++. ...++.++|++|++.+++.+||+||+.+...+
T Consensus 36 ~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------- 106 (192)
T cd03232 36 TALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------- 106 (192)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-HHhhhceEEecccCccccCCcHHHHHHHHHHH--------
Confidence 489999999999999999998642345799999999875 34456789999999999999999999864311
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKS 160 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~ 160 (602)
+ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 107 -----------~------------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~ 157 (192)
T cd03232 107 -----------R------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADS 157 (192)
T ss_pred -----------h------------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHc
Confidence 0 39999999999999999999999999999999999999999999999878
Q ss_pred CcEEEEEEcCCcHHHHHHhhHHhhhcC-CceeecC
Q 007474 161 GSVVIMSIHQPSYRIFSLLNRLIFLSH-GQTVYSG 194 (602)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv~~G 194 (602)
|+|||+++|+++.++.+.+|++++|++ |++++.|
T Consensus 158 ~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 158 GQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999987447889999999999 9999865
No 197
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=4.4e-36 Score=365.97 Aligned_cols=193 Identities=28% Similarity=0.402 Sum_probs=172.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc--ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES--RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
++|+||||||||||+|+|+|..+++ +|+|.++|+++.. ...++.+||++|++.+++.+||+|++.+.++++ +.
T Consensus 1968 ~gLLG~NGAGKTTLlkmL~Gll~pt--sG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~ 2042 (2272)
T TIGR01257 1968 FGLLGVNGAGKTTTFKMLTGDTTVT--SGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GV 2042 (2272)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCC--ccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CC
Confidence 4899999999999999999999864 5999999998743 234567999999999999999999999877654 34
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
++++.+++++++++.+||.+.+|++++. |||||||||+||+||+.+|+++||||||+|||+.+++.+.+.|++++
T Consensus 2043 ~~~~~~~~v~~lLe~lgL~~~~dk~~~~-----LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~ 2117 (2272)
T TIGR01257 2043 PAEEIEKVANWSIQSLGLSLYADRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSII 2117 (2272)
T ss_pred CHHHHHHHHHHHHHHcCCHHHhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 4555667889999999999988888775 99999999999999999999999999999999999999999999998
Q ss_pred hcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccchHHHHHH
Q 007474 159 KSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPATDFSLFFA 205 (602)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~~f~ 205 (602)
++|+|||++||+++ ++..+|||+++|.+|+++..|++.+ ++..|.
T Consensus 2118 ~~g~TIILtTH~me-e~e~lcDrV~IL~~G~i~~~Gs~q~-Lk~~~g 2162 (2272)
T TIGR01257 2118 REGRAVVLTSHSME-ECEALCTRLAIMVKGAFQCLGTIQH-LKSKFG 2162 (2272)
T ss_pred hCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH-HHHHhC
Confidence 88999999999987 7999999999999999999999887 665543
No 198
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.1e-36 Score=292.58 Aligned_cols=163 Identities=36% Similarity=0.637 Sum_probs=138.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC-CceeEEEECCEeccc--ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE-SLKGTVTLNGAVLES--RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~-~~~G~i~~~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+||||||||||+++|+|+.++. +.+|+|.++|+++.. ...++.++|++|++.+++.+||+||+.+.....
T Consensus 36 ~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---- 111 (202)
T cd03233 36 VLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK---- 111 (202)
T ss_pred EEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc----
Confidence 4899999999999999999998742 457999999998753 234567899999999999999999998754210
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEI 157 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (602)
.++. +..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 112 ----------------------~~~~-----~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~ 164 (202)
T cd03233 112 ----------------------GNEF-----VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM 164 (202)
T ss_pred ----------------------cccc-----hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 2333 3459999999999999999999999999999999999999999999999
Q ss_pred Hhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecC
Q 007474 158 AKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSG 194 (602)
Q Consensus 158 ~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 194 (602)
+++ +.|+|+++|+...++.+.+|++++|++|++++.|
T Consensus 165 ~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 165 ADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 875 6777777776545788999999999999998764
No 199
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.1e-35 Score=304.27 Aligned_cols=188 Identities=27% Similarity=0.368 Sum_probs=159.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc------cccceEEEEccCC--cCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR------LLKIISAYVMQDE--LLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~------~~~~~~~yv~Q~~--~l~~~lTV~e~l~f~~~~ 72 (602)
++|+||||||||||+++|+|+.++ .+|+|.++|+++... ..++.++|++|+. .+.+..|+.|++.+....
T Consensus 41 ~~i~G~nGsGKSTLl~~l~Gl~~p--~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~ 118 (268)
T PRK10419 41 VALLGRSGCGKSTLARLLVGLESP--SQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRH 118 (268)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHh
Confidence 489999999999999999999875 469999999987431 2356799999997 467789999999765431
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVV 151 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (602)
. ......+..++++++++.+|+. +..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.
T Consensus 119 ~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~ 191 (268)
T PRK10419 119 L--LSLDKAERLARASEMLRAVDLDDSVLDKRPP-----QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVI 191 (268)
T ss_pred h--ccCCHHHHHHHHHHHHHHcCCChhHhhCCCc-----cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHH
Confidence 1 1223445566899999999996 45666554 59999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 152 KVLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 152 ~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+.|++++++ |.|||+++|++. ++.+++|++++|++|++++.|++++
T Consensus 192 ~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~ 238 (268)
T PRK10419 192 RLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDNGQIVETQPVGD 238 (268)
T ss_pred HHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEECCEEeeeCChhh
Confidence 999999875 899999999987 6888999999999999999998765
No 200
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-35 Score=301.60 Aligned_cols=192 Identities=26% Similarity=0.372 Sum_probs=156.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE---SLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~---~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+||||||||||+++|+|+.++. +.+|+|.++|+++.. ...++.++|++|++.+++. ||+||+.+....
T Consensus 33 ~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~ 111 (251)
T PRK14249 33 TAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRM 111 (251)
T ss_pred EEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHh
Confidence 4899999999999999999998753 136999999998742 1345679999999988885 999999986543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK 152 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (602)
+. ...+++.+++++++++.+++.+...... +..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+
T Consensus 112 ~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 188 (251)
T PRK14249 112 LG--TTAQSRLDEVVEKSLRQAALWDEVKDNL-HKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEE 188 (251)
T ss_pred cC--CChhhHHHHHHHHHHHHhCCchhhhhHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 21 1112334566788889888753211111 22344699999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 153 VLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 153 ~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.|+++. +++|||+++|+++ ++.+++|++++|++|++++.|++++
T Consensus 189 ~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 189 LMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 999995 5899999999987 6889999999999999999998765
No 201
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=301.51 Aligned_cols=188 Identities=24% Similarity=0.388 Sum_probs=155.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCC--C-CceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEK--E-SLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~--~-~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+||||||||||+++|+|+.++ . +.+|+|.++|+++.. ...++.++|++|++.+++ .||+||+.+....
T Consensus 33 ~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~ 111 (251)
T PRK14251 33 TALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKI 111 (251)
T ss_pred EEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHH
Confidence 489999999999999999999862 1 257999999998742 124566899999998886 7999999876543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLRS----AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAF 148 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (602)
.. ...++..+++++++++.+++.. ..++. ++.||||||||++||++|+.+|++++|||||+|||+.++.
T Consensus 112 ~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~ 184 (251)
T PRK14251 112 AG--VKDKELIDQRVEESLKQAAIWKETKDNLDRN-----AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSS 184 (251)
T ss_pred cC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHH
Confidence 21 1122334567889999999852 23333 3469999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 149 KVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 149 ~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.+.|+++++ +.|||+++|+++ ++.+++|++++|++|+++..|++++
T Consensus 185 ~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14251 185 EIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLMNGDLIEAGPTEE 232 (251)
T ss_pred HHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEECCEEEEeCCHHH
Confidence 99999999964 689999999987 5889999999999999999987655
No 202
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-35 Score=302.69 Aligned_cols=193 Identities=25% Similarity=0.360 Sum_probs=158.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE---SLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~---~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+|||||||||||++|+|+.++. ..+|+|.++|+++.. ...++.++|++|+..+++ +|+.||+.+....
T Consensus 36 ~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~ 114 (261)
T PRK14258 36 TAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKI 114 (261)
T ss_pred EEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHh
Confidence 5899999999999999999998753 136999999988631 134566899999988888 8999999876532
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK 152 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (602)
.. ..+..+.++++.++++.+++.+..+... +..+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+
T Consensus 115 ~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~ 191 (261)
T PRK14258 115 VG--WRPKLEIDDIVESALKDADLWDEIKHKI-HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVES 191 (261)
T ss_pred cC--CCcHHHHHHHHHHHHHHcCCcchhhhHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 21 1133444567899999999854221111 22344699999999999999999999999999999999999999999
Q ss_pred HHHHHHh-cCcEEEEEEcCCcHHHHHHhhHHhhhcC-----CceeecCCccc
Q 007474 153 VLGEIAK-SGSVVIMSIHQPSYRIFSLLNRLIFLSH-----GQTVYSGTPAT 198 (602)
Q Consensus 153 ~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~-----G~iv~~G~~~~ 198 (602)
.|+++++ +|+|||+++|++. ++.++||++++|++ |++++.|++++
T Consensus 192 ~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~ 242 (261)
T PRK14258 192 LIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIGQLVEFGLTKK 242 (261)
T ss_pred HHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCCcCceEEEeCCHHH
Confidence 9999875 5899999999987 68999999999999 99999998766
No 203
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=2e-35 Score=287.00 Aligned_cols=162 Identities=30% Similarity=0.442 Sum_probs=137.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc-----ccccceEEEEccCCc-CCCCCCHHHHHHHHHHhcC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES-----RLLKIISAYVMQDEL-LFPMLTVEETLMFSAECRL 74 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~-l~~~lTV~e~l~f~~~~~~ 74 (602)
++|+||||||||||+++|+|+.++ .+|+|.++|+++.. ...++.++|++|++. .+...||+||+.+.....
T Consensus 21 ~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~~~- 97 (190)
T TIGR01166 21 LALLGANGAGKSTLLLHLNGLLRP--QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNL- 97 (190)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHHHHHc-
Confidence 589999999999999999999875 46999999998741 123556899999973 233479999999865432
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 007474 75 PRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVL 154 (602)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (602)
.....+.+++++++++.+||.+..++.+. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus 98 --~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l 170 (190)
T TIGR01166 98 --GLSEAEVERRVREALTAVGASGLRERPTH-----CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAIL 170 (190)
T ss_pred --CCCHHHHHHHHHHHHHHcCchhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 23445556788999999999887777765 49999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEEEEcCCc
Q 007474 155 GEIAKSGSVVIMSIHQPS 172 (602)
Q Consensus 155 ~~l~~~g~tvi~~~H~~~ 172 (602)
++++++|+|||+++|+++
T Consensus 171 ~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 171 RRLRAEGMTVVISTHDVD 188 (190)
T ss_pred HHHHHcCCEEEEEeeccc
Confidence 999888999999999985
No 204
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-35 Score=304.46 Aligned_cols=192 Identities=26% Similarity=0.399 Sum_probs=157.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE---SLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~---~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+||||||||||+++|+|+.++. +.+|+|.++|.++.. ...++.++|++|++.+++. ||+||+.+....
T Consensus 54 ~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~ 132 (272)
T PRK14236 54 TAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRL 132 (272)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHh
Confidence 4899999999999999999998631 357999999998742 1345678999999988886 999999876543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK 152 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (602)
.. ...+.+.+++++++++.+++.+...+.. +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+
T Consensus 133 ~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~ 209 (272)
T PRK14236 133 QG--INNRRVLDEAVERSLRGAALWDEVKDRL-HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEE 209 (272)
T ss_pred cC--CCcHHHHHHHHHHHHHHcCCChhHHHHh-hCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHH
Confidence 21 1123344567889999999864211111 12334699999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 153 VLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 153 ~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.|+++++ +.|||+++|+++ ++.+.+|++++|++|+++..|++++
T Consensus 210 ~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 210 LITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEECCEEEecCCHHH
Confidence 9999976 789999999987 5889999999999999999987655
No 205
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-35 Score=307.18 Aligned_cols=188 Identities=24% Similarity=0.385 Sum_probs=155.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCC--CC-CceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIE--KE-SLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~--~~-~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+|||||||||||++|+|+.+ +. +.+|+|.++|+++.. ...++.++|++|++.+++. ||.||+.+....
T Consensus 68 ~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~ 146 (286)
T PRK14275 68 TAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRL 146 (286)
T ss_pred EEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHh
Confidence 48999999999999999999854 21 257999999998642 1245679999999988875 999999986543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLR----SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAF 148 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (602)
+. ..+....++++.++++.+|+. +..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 147 ~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~ 219 (286)
T PRK14275 147 HG--INDKKQLEEIVEKSLRKAALWDEVSDRLDKNA-----LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219 (286)
T ss_pred cC--CCcHHHHHHHHHHHHHHhCCccchhhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 21 112334456788899999874 3344444 459999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 149 KVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 149 ~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.+.|+++++ ++|||+++|++. ++.+++|++++|++|+++..|++.+
T Consensus 220 ~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 220 KIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999975 689999999987 5888999999999999999998655
No 206
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=301.61 Aligned_cols=192 Identities=22% Similarity=0.346 Sum_probs=156.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCC---ceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKES---LKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~---~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+||||||||||+++|+|+.++.+ .+|+|.++|+++.. ...++.++|++|++.+++. ||+||+.+....
T Consensus 35 ~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~ 113 (253)
T PRK14261 35 TALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRI 113 (253)
T ss_pred EEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHh
Confidence 48999999999999999999875322 47999999998743 2335568999999988885 999999987553
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK 152 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (602)
+. .....+.++++.++++.+++.+...+.. +...+.||||||||++||++|+.+|++++|||||+|||+.++..+.+
T Consensus 114 ~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~ 190 (253)
T PRK14261 114 HG--EKNKKTLDTIVEKSLKGAALWDEVKDRL-HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIED 190 (253)
T ss_pred cC--CCCHHHHHHHHHHHHHHhcCchhhHHHh-hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 31 1123344567888999998853211111 22344699999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 153 VLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 153 ~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.|+++++ ++|||+++|++. ++.+.+|++++|++|+++..|++++
T Consensus 191 ~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14261 191 LIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYLGKLIEFDKTTQ 234 (253)
T ss_pred HHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEECCEEEEcCCHHH
Confidence 9999976 589999999987 5888999999999999999988655
No 207
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=304.45 Aligned_cols=188 Identities=23% Similarity=0.345 Sum_probs=154.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCC--C-CCceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIE--K-ESLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~--~-~~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+||||||||||+++|+|+.+ + .+.+|+|.++|+++.. ...++.++|++|++.+++. ||.||+.+....
T Consensus 50 ~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~ 128 (268)
T PRK14248 50 TALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKY 128 (268)
T ss_pred EEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHh
Confidence 48999999999999999999864 2 1357999999998742 1235678999999988885 999999876432
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLR----SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAF 148 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (602)
.. .......++++.++++.+++. +..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 129 ~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~ 201 (268)
T PRK14248 129 AG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSSA-----LSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNA 201 (268)
T ss_pred cC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcCc-----ccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHH
Confidence 21 112233456678889999885 2334444 459999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 149 KVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 149 ~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.+.|+++++ ++|||+++|+++ ++.+++|++++|++|++++.|++++
T Consensus 202 ~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 249 (268)
T PRK14248 202 KIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFLNGDLVEYDQTEQ 249 (268)
T ss_pred HHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999965 689999999986 6889999999999999999987655
No 208
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-35 Score=330.58 Aligned_cols=188 Identities=25% Similarity=0.389 Sum_probs=160.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc----cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR----LLKIISAYVMQDELLFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~----~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~ 76 (602)
++|+|||||||||||++|+|+.+|. +|+|.++|+++... ..++.++||+|++.+++.+||.||+.+........
T Consensus 33 ~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 110 (501)
T PRK11288 33 HALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGG 110 (501)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccC
Confidence 4899999999999999999998754 59999999987421 23566899999999999999999998853211111
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
.....+.+++++++++.+||.+..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 185 (501)
T PRK11288 111 IVNRRLLNYEAREQLEHLGVDIDPDTPLK-----YLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRE 185 (501)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCcCCchh-----hCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 12344556789999999999877776665 4999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCc
Q 007474 157 IAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTP 196 (602)
Q Consensus 157 l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 196 (602)
++++|+|||+++|+++ ++.++||++++|++|+++..++.
T Consensus 186 ~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 186 LRAEGRVILYVSHRME-EIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCc
Confidence 9888999999999987 68899999999999999876653
No 209
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=337.46 Aligned_cols=188 Identities=26% Similarity=0.390 Sum_probs=161.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc------cccceEEEEccCC--cCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR------LLKIISAYVMQDE--LLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~------~~~~~~~yv~Q~~--~l~~~lTV~e~l~f~~~~ 72 (602)
++|+||||||||||+++|+|++++ .+|+|.++|+++... ..++.++||+|++ .+++.+||.|++.+....
T Consensus 353 ~~lvG~nGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~ 430 (623)
T PRK10261 353 LSLVGESGSGKSTTGRALLRLVES--QGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRV 430 (623)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCC--CCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHH
Confidence 589999999999999999999875 459999999987431 2355799999996 589999999999876543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVV 151 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (602)
. ....+.+.+++++++++.+||. +..++.++ .|||||||||+||++|+.+|++|||||||+|||+.++.+++
T Consensus 431 ~--~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~-----~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~ 503 (623)
T PRK10261 431 H--GLLPGKAAAARVAWLLERVGLLPEHAWRYPH-----EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQII 503 (623)
T ss_pred c--CCCCHHHHHHHHHHHHHHcCCCHHHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 2 1113445567899999999996 55676665 49999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 152 KVLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 152 ~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++|++++++ |.|||++||+++ .+.++|||+++|++|++++.|++++
T Consensus 504 ~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~G~iv~~g~~~~ 550 (623)
T PRK10261 504 NLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYLGQIVEIGPRRA 550 (623)
T ss_pred HHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHH
Confidence 999999875 899999999987 6889999999999999999998766
No 210
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.3e-35 Score=289.30 Aligned_cols=155 Identities=55% Similarity=0.907 Sum_probs=138.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCC--CCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRI--EKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~--~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
++|+||||||||||+++|+|+. ++ .+|+|.++|+++.....++.++|++|++.+++.+|++||+.+...+.
T Consensus 38 ~~l~G~nGsGKStLl~~i~Gl~~~~~--~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~----- 110 (194)
T cd03213 38 TAIMGPSGAGKSTLLNALAGRRTGLG--VSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR----- 110 (194)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCC--CceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-----
Confidence 4899999999999999999998 64 46999999998865445667899999999999999999997643210
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 111 --------------------------------~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~ 158 (194)
T cd03213 111 --------------------------------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLA 158 (194)
T ss_pred --------------------------------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 399999999999999999999999999999999999999999999998
Q ss_pred hcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecC
Q 007474 159 KSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSG 194 (602)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 194 (602)
++|+|+|+++|+++.++.+++|++++|++|++++.|
T Consensus 159 ~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 159 DTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred hCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 789999999999965688899999999999998764
No 211
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-36 Score=305.25 Aligned_cols=189 Identities=28% Similarity=0.454 Sum_probs=154.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCC--CCCCHHHHHHHHHHhcCC-CC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLF--PMLTVEETLMFSAECRLP-RS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~--~~lTV~e~l~f~~~~~~~-~~ 77 (602)
++|+|||||||||||++|+|+++| .+|+|.++|+++.....++.++|++|++.+. ...+++|++.+....... ..
T Consensus 36 ~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 113 (272)
T PRK15056 36 AALVGVNGSGKSTLFKALMGFVRL--ASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLR 113 (272)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheeccccccccccc
Confidence 489999999999999999999875 4599999999875332234589999997642 234789988653211000 01
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEI 157 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (602)
....+.+++++++++.+||.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++
T Consensus 114 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~ 188 (272)
T PRK15056 114 RAKKRDRQIVTAALARVDMVEFRHRQIGE-----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLREL 188 (272)
T ss_pred CCCHHHHHHHHHHHHHcCChhHhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 12233456788999999999888877765 9999999999999999999999999999999999999999999999
Q ss_pred HhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 158 AKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 158 ~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+++|+|||+++|+++ ++.+++|+++++ +|+++..|++++
T Consensus 189 ~~~g~tviivsH~~~-~~~~~~d~v~~~-~G~i~~~g~~~~ 227 (272)
T PRK15056 189 RDEGKTMLVSTHNLG-SVTEFCDYTVMV-KGTVLASGPTET 227 (272)
T ss_pred HhCCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHh
Confidence 888999999999987 688999999777 899999987765
No 212
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-36 Score=320.89 Aligned_cols=182 Identities=32% Similarity=0.511 Sum_probs=158.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
+||+|+||||||||+++|+|+.++ .+|+|.+||.+.++ ..++++++||+|++.+++. |++||+.++..
T Consensus 350 talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~------ 420 (559)
T COG4988 350 TALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARP------ 420 (559)
T ss_pred EEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCC------
Confidence 589999999999999999999985 45999999988753 5688999999999999987 99999987531
Q ss_pred CCHHHHHHHHHHHHHHcCCCcc------cccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRSA------AKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVV 151 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~------~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (602)
+..++.+.+++++.||.+. .|+.+|+ ..++|||||+|||++||||+++++++++||||++||.++.+.|.
T Consensus 421 ---~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~ 496 (559)
T COG4988 421 ---DASDEEIIAALDQAGLLEFVPKPDGLDTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIIL 496 (559)
T ss_pred ---cCCHHHHHHHHHHhcHHHhhcCCCcccchhcc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHH
Confidence 1234567777777776543 4677775 56789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 152 KVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 152 ~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+.|.+++++ +||+++||++. ...-+|+|++|++|+++..|..++
T Consensus 497 ~~l~~l~~~-ktvl~itHrl~--~~~~~D~I~vld~G~l~~~g~~~~ 540 (559)
T COG4988 497 QALQELAKQ-KTVLVITHRLE--DAADADRIVVLDNGRLVEQGTHEE 540 (559)
T ss_pred HHHHHHHhC-CeEEEEEcChH--HHhcCCEEEEecCCceeccCCHHH
Confidence 999999875 99999999985 567899999999999999998876
No 213
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-36 Score=302.50 Aligned_cols=182 Identities=29% Similarity=0.432 Sum_probs=147.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+||||||||||+++|+|+.++ .+|+|.++|+++.. ...++.++|++|++.+++ .||+||+.+....
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~----- 102 (234)
T cd03251 31 VALVGPSGSGKSTLVNLIPRFYDV--DSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG----- 102 (234)
T ss_pred EEEECCCCCCHHHHHHHHhccccC--CCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----
Confidence 489999999999999999999875 46999999988643 234566899999998887 6999999875321
Q ss_pred CCHHHHH-----HHHHHHHHHc--CCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 78 VSKKRKR-----ERVEALIDQL--GLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 78 ~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
....+.. ..+++.++.+ ++.+..+..+ ..||||||||++||++|+.+|++++|||||+|||+.++..+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l 177 (234)
T cd03251 103 ATREEVEEAARAANAHEFIMELPEGYDTVIGERG-----VKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLV 177 (234)
T ss_pred CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCC-----CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence 1111111 1245566666 5655555444 45999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|+++++ ++|||+++|++. ++.. ||++++|++|+++..|++++
T Consensus 178 ~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~v~~l~~G~i~~~~~~~~ 222 (234)
T cd03251 178 QAALERLMK-NRTTFVIAHRLS-TIEN-ADRIVVLEDGKIVERGTHEE 222 (234)
T ss_pred HHHHHHhcC-CCEEEEEecCHH-HHhh-CCEEEEecCCeEeeeCCHHH
Confidence 999999974 899999999997 4654 99999999999999887655
No 214
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=304.26 Aligned_cols=192 Identities=23% Similarity=0.400 Sum_probs=158.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEeccc----ccccceEEEEccCCcCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE---SLKGTVTLNGAVLES----RLLKIISAYVMQDELLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~---~~~G~i~~~g~~~~~----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~ 73 (602)
++|+||||||||||+++|+|+.++. +.+|+|.++|+++.. ...++.++|++|++.+++ .||+||+.+.....
T Consensus 50 ~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~ 128 (276)
T PRK14271 50 TSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH 128 (276)
T ss_pred EEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc
Confidence 5899999999999999999998752 357999999998742 234567899999998888 79999998764322
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 007474 74 LPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKV 153 (602)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (602)
...+..+.++++.++++.+++.+..++.. +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.
T Consensus 129 --~~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~ 205 (276)
T PRK14271 129 --KLVPRKEFRGVAQARLTEVGLWDAVKDRL-SDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEF 205 (276)
T ss_pred --cCCCHHHHHHHHHHHHHHcCCCchhhhHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 11244455567788999999975322211 123446999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 154 LGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 154 l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
|+++++ ++|||+++|+++ ++.+++|++++|++|+++..|++++
T Consensus 206 L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~ 248 (276)
T PRK14271 206 IRSLAD-RLTVIIVTHNLA-QAARISDRAALFFDGRLVEEGPTEQ 248 (276)
T ss_pred HHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999976 589999999987 6889999999999999999998765
No 215
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=2e-35 Score=294.50 Aligned_cols=174 Identities=29% Similarity=0.407 Sum_probs=147.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+||||||||||+++|+|+.++ .+|+|.++|++... ..+...+.+.+||+||+.+..... ....
T Consensus 51 ~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~---------~~~~~~~~~~~tv~enl~~~~~~~---~~~~ 116 (224)
T cd03220 51 IGLIGRNGAGKSTLLRLLAGIYPP--DSGTVTVRGRVSSL---------LGLGGGFNPELTGRENIYLNGRLL---GLSR 116 (224)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEchh---------hcccccCCCCCcHHHHHHHHHHHc---CCCH
Confidence 489999999999999999999875 45999999987531 111234567899999998865432 1234
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKS 160 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~ 160 (602)
.+.+++++++++.+||.+..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 117 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~ 191 (224)
T cd03220 117 KEIDEKIDEIIEFSELGDFIDLPVK-----TYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ 191 (224)
T ss_pred HHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 4556678999999999988887765 49999999999999999999999999999999999999999999999878
Q ss_pred CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecC
Q 007474 161 GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSG 194 (602)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 194 (602)
|+|||+++|++. ++.+++|++++|++|+++..|
T Consensus 192 ~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 192 GKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 899999999986 688899999999999998765
No 216
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-35 Score=299.48 Aligned_cols=188 Identities=24% Similarity=0.364 Sum_probs=153.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCC--CC-CceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIE--KE-SLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~--~~-~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+||||||||||+++|+|+.+ +. +.+|+|.++|+++.. ...++.++|++|++.+++ .||.||+.+....
T Consensus 34 ~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~ 112 (252)
T PRK14255 34 TALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRL 112 (252)
T ss_pred EEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHH
Confidence 58999999999999999999865 21 247999999998742 134567999999998888 6999999886543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLR----SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAF 148 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (602)
+. ...++..++++.+.++.+++. +..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 113 ~~--~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~ 185 (252)
T PRK14255 113 AG--VKDKAVLDEAVETSLKQAAIWDEVKDHLHESA-----LSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISST 185 (252)
T ss_pred cC--CCCHHHHHHHHHHHHHHcCCccchhhHHhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 21 112233345677888888874 2333333 469999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 149 KVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 149 ~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.+.|+++++ +.|||+++|++. ++.+.+|++++|++|+++..|++.+
T Consensus 186 ~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14255 186 QIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLTGNLIEFADTKQ 233 (252)
T ss_pred HHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999976 589999999987 6889999999999999999987655
No 217
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-36 Score=331.42 Aligned_cols=188 Identities=23% Similarity=0.422 Sum_probs=158.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc----cccceEEEEccC---CcCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR----LLKIISAYVMQD---ELLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~----~~~~~~~yv~Q~---~~l~~~lTV~e~l~f~~~~~ 73 (602)
++|+||||||||||||+|+|+.+| .+|+|.++|+++... ..++.++||+|+ ..+++.+||.||+.+....+
T Consensus 292 ~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~ 369 (510)
T PRK09700 292 LGFAGLVGSGRTELMNCLFGVDKR--AGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLK 369 (510)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccc
Confidence 589999999999999999999875 459999999987431 234568999998 46889999999998753211
Q ss_pred ---CCC--C-CCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 007474 74 ---LPR--S-VSKKRKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTS 146 (602)
Q Consensus 74 ---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~ 146 (602)
... . ....+.+++++++++.+||. +..++.+++ |||||||||+||++|+.+|++|||||||+|||+.+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~ 444 (510)
T PRK09700 370 DGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITE-----LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGA 444 (510)
T ss_pred cccccccccccChHHHHHHHHHHHHhcCCCCCCccCcccc-----CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHH
Confidence 000 0 12233446788999999997 677877765 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCc
Q 007474 147 AFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTP 196 (602)
Q Consensus 147 ~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 196 (602)
+..+.+.|++++++|.|||+++|++. ++.++||++++|++|+++..++.
T Consensus 445 ~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 445 KAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEecC
Confidence 99999999999888999999999987 68899999999999999988765
No 218
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-35 Score=305.02 Aligned_cols=186 Identities=24% Similarity=0.389 Sum_probs=154.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCC---CCceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEK---ESLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~---~~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+|||||||||||++|+|+.++ .+.+|+|.++|+++.. ...++.++|++|++.+++. ||.||+.+....
T Consensus 68 ~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~ 146 (285)
T PRK14254 68 TAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKI 146 (285)
T ss_pred EEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHH
Confidence 489999999999999999999863 1357999999998632 2345678999999888885 999999886543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLRS----AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAF 148 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (602)
+ ..+. +.+++++++++.+||.+ ..++.+ +.||||||||++||++|+.+|++|||||||+|||+.++.
T Consensus 147 ~---~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~-----~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~ 217 (285)
T PRK14254 147 Q---GYDG-DIDERVEESLRRAALWDEVKDQLDSSG-----LDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATS 217 (285)
T ss_pred c---CCcH-HHHHHHHHHHHHcCCCchhHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHH
Confidence 2 1222 34567899999999853 344444 469999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHh-hhcCCceeecCCccc
Q 007474 149 KVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLI-FLSHGQTVYSGTPAT 198 (602)
Q Consensus 149 ~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~-~L~~G~iv~~G~~~~ 198 (602)
.+.+.|++++++ +|||+++|++. ++.+++||++ +|++|+++..|++.+
T Consensus 218 ~l~~~L~~~~~~-~tiii~tH~~~-~i~~~~dri~v~l~~G~i~~~g~~~~ 266 (285)
T PRK14254 218 KIEDLIEELAEE-YTVVIVTHNMQ-QAARISDKTAVFLTGGELVEFDDTDK 266 (285)
T ss_pred HHHHHHHHHhcC-CEEEEEeCCHH-HHHhhcCEEEEEeeCCEEEEeCCHHH
Confidence 999999999864 89999999987 6888999975 679999999887654
No 219
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-35 Score=300.91 Aligned_cols=190 Identities=23% Similarity=0.357 Sum_probs=157.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE---SLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~---~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+||||||||||+++|+|++++. +.+|+|.++|+++.. ...++.++|++|++.++ .+|+.||+.+....
T Consensus 37 ~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~ 115 (261)
T PRK14263 37 TGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRL 115 (261)
T ss_pred EEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhh
Confidence 5899999999999999999998752 257999999998742 13456689999998887 58999999987653
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK 152 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (602)
+. . ..+..++++++++.++|.+..+... +...+.||||||||++||+||+.+|++|+|||||+|||+.++.++.+
T Consensus 116 ~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~ 190 (261)
T PRK14263 116 NR---Y-KGDLGDRVKHALQGAALWDEVKDKL-KVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEE 190 (261)
T ss_pred cC---c-hHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 31 1 2334568899999999865332222 23455799999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhc--------CCceeecCCccc
Q 007474 153 VLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLS--------HGQTVYSGTPAT 198 (602)
Q Consensus 153 ~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~--------~G~iv~~G~~~~ 198 (602)
.|++++ +++|||+++|+++ ++.+++|++++|+ +|+++..|+.++
T Consensus 191 ~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~ 242 (261)
T PRK14263 191 LMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQ 242 (261)
T ss_pred HHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCHHH
Confidence 999996 4789999999987 5889999999995 899999997655
No 220
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.9e-35 Score=292.62 Aligned_cols=173 Identities=23% Similarity=0.338 Sum_probs=150.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+||||||||||+++|+|+.++. +|+|.++|+++.....++.++|++|++.+++.+|+.||+.+....+ ..
T Consensus 40 ~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~-- 112 (214)
T PRK13543 40 LLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLH---GR-- 112 (214)
T ss_pred EEEEcCCCCCHHHHHHHHhCCCCCC--CeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhc---CC--
Confidence 4899999999999999999998854 5999999998764334456899999999999999999998865432 11
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKS 160 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~ 160 (602)
..+++++++++.++|.+..++.++ .||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 113 -~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 186 (214)
T PRK13543 113 -RAKQMPGSALAIVGLAGYEDTLVR-----QLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRG 186 (214)
T ss_pred -cHHHHHHHHHHHcCChhhccCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 134567889999999887777765 49999999999999999999999999999999999999999999999888
Q ss_pred CcEEEEEEcCCcHHHHHHhhHHhhhcC
Q 007474 161 GSVVIMSIHQPSYRIFSLLNRLIFLSH 187 (602)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~~L~~ 187 (602)
|+|||+++|++. ++.+++|++++++.
T Consensus 187 ~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 187 GGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred CCEEEEEecChh-hhhhhcceEEEEee
Confidence 999999999987 69999999988753
No 221
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.6e-36 Score=269.88 Aligned_cols=188 Identities=30% Similarity=0.511 Sum_probs=164.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---------ccccceEEEEccCCcCCCCCCHHHHHHHHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---------RLLKIISAYVMQDELLFPMLTVEETLMFSAE 71 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---------~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~ 71 (602)
+.++||||||||||++.|.=+..| .+|+..+.|...+- ...|+.+|.|+|+-+++|++||.|||.-+-
T Consensus 31 lvllgpsgagkssllr~lnlle~p--~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap- 107 (242)
T COG4161 31 LVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP- 107 (242)
T ss_pred EEEECCCCCchHHHHHHHHHHhCC--CCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-
Confidence 368999999999999999877554 45999998865421 235677999999999999999999996542
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 007474 72 CRLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVV 151 (602)
Q Consensus 72 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (602)
++. .++++++.+.+..++++++.|.+.+|+..- .|||||+|||+|||||+.+|++|++||||+.|||+-..+++
T Consensus 108 ~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~pl-----hlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv 181 (242)
T COG4161 108 CRV-LGLSKDQALARAEKLLKRLRLKPYADRYPL-----HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIV 181 (242)
T ss_pred HHH-hCCCHHHHHHHHHHHHHHhccccccccCce-----ecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHH
Confidence 332 357888899999999999999999987654 49999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 152 KVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 152 ~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+++|+|+..|.|-++++|... ..-..+.+|+.|.+|+||+.|+.+.
T Consensus 182 ~iikel~~tgitqvivthev~-va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 182 SIIKELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHhcCceEEEEEeehh-HHHhhhhheEeeecCeeEeecchhh
Confidence 999999999999999999986 4677999999999999999998654
No 222
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=3.4e-35 Score=297.90 Aligned_cols=192 Identities=21% Similarity=0.290 Sum_probs=155.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc---cccc-eEEEEccCCcCCCCCCHHHHHHHHHHhcCC-
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR---LLKI-ISAYVMQDELLFPMLTVEETLMFSAECRLP- 75 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~---~~~~-~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~- 75 (602)
++|+||||||||||+++|+|+....+.+|+|.++|+++... ..++ .++|++|++.+++.+|+.|++.+.......
T Consensus 36 ~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~ 115 (252)
T CHL00131 36 HAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKF 115 (252)
T ss_pred EEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcc
Confidence 58999999999999999999832123569999999987532 2222 478999999999999999999875432110
Q ss_pred ---CCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 007474 76 ---RSVSKKRKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVV 151 (602)
Q Consensus 76 ---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (602)
......+..+++.++++.+|+. +..++.++ .+|||||||||+||++|+.+|++++|||||+|||+.++..+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~ 191 (252)
T CHL00131 116 QGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN----EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIA 191 (252)
T ss_pred cccccccHHHHHHHHHHHHHHcCCchhhhccccc----cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHH
Confidence 0112223456788999999997 35555543 149999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEEcCCcHHHHHH-hhHHhhhcCCceeecCCcc
Q 007474 152 KVLGEIAKSGSVVIMSIHQPSYRIFSL-LNRLIFLSHGQTVYSGTPA 197 (602)
Q Consensus 152 ~~l~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~ 197 (602)
+.|++++++|+|||+++|+++ .+... +|++++|++|++++.|+++
T Consensus 192 ~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (252)
T CHL00131 192 EGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQNGKIIKTGDAE 237 (252)
T ss_pred HHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEeCCEEEEecChh
Confidence 999999878999999999986 46665 8999999999999999776
No 223
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3.7e-36 Score=339.90 Aligned_cols=184 Identities=30% Similarity=0.509 Sum_probs=155.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
+||+|+||||||||+|+|+|+++|. +|+|++||.++.. ...|+.+|||+||+.+|.. |++||+.++.. .
T Consensus 502 vaIvG~SGsGKSTL~KLL~gly~p~--~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p-----~ 573 (709)
T COG2274 502 VAIVGRSGSGKSTLLKLLLGLYKPQ--QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGNP-----E 573 (709)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCCC-----C
Confidence 5899999999999999999999865 5999999999854 5678999999999999887 99999987532 2
Q ss_pred CCHHHHH-----HHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 007474 78 VSKKRKR-----ERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK 152 (602)
Q Consensus 78 ~~~~~~~-----~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (602)
.+.++.. .-+++.+.. +..-.||.+|+ ...+||||||||++|||+|+++|+||+||||||+||+.+.+.+.+
T Consensus 574 ~~~e~i~~A~~~ag~~~fI~~--lP~gy~t~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~ 650 (709)
T COG2274 574 ATDEEIIEAAQLAGAHEFIEN--LPMGYDTPVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQ 650 (709)
T ss_pred CCHHHHHHHHHHhCcHHHHHh--ccccccccccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHH
Confidence 2222221 112333333 34456888986 455799999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 153 VLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 153 ~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.|+++.+ |+|+|+++|.++ ..+.|||+++|++|+++.+|+.++
T Consensus 651 ~L~~~~~-~~T~I~IaHRl~--ti~~adrIiVl~~Gkiv~~gs~~e 693 (709)
T COG2274 651 NLLQILQ-GRTVIIIAHRLS--TIRSADRIIVLDQGKIVEQGSHEE 693 (709)
T ss_pred HHHHHhc-CCeEEEEEccch--HhhhccEEEEccCCceeccCCHHH
Confidence 9999864 799999999986 689999999999999999999877
No 224
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.2e-35 Score=299.53 Aligned_cols=188 Identities=26% Similarity=0.408 Sum_probs=154.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEe-----cccc-------cccceEEEEccCCc--CCCCCCHHHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAV-----LESR-------LLKIISAYVMQDEL--LFPMLTVEETL 66 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~-----~~~~-------~~~~~~~yv~Q~~~--l~~~lTV~e~l 66 (602)
++|+|||||||||||++|+|+.++. +|+|.++|++ +... ..++.++|++|++. +.+.+|+.||+
T Consensus 32 ~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i 109 (253)
T TIGR02323 32 LGIVGESGSGKSTLLGCLAGRLAPD--HGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANI 109 (253)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHH
Confidence 4899999999999999999998754 5999999976 4321 12345899999974 56678999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 007474 67 MFSAECRLPRSVSKKRKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDST 145 (602)
Q Consensus 67 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~ 145 (602)
.+..... . .....+.+++++++++.+|+. +..++.+. .|||||||||+||++|+.+|++|+|||||+|||+.
T Consensus 110 ~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~ 182 (253)
T TIGR02323 110 GERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDLPR-----AFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVS 182 (253)
T ss_pred HHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcCch-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 7643211 1 111223457889999999997 35666554 59999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 146 SAFKVVKVLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 146 ~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++..+.+.|++++++ |.|||+++|++. ++.+++|++++|++|+++..|++++
T Consensus 183 ~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~G~i~~~~~~~~ 235 (253)
T TIGR02323 183 VQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQGRVVESGLTDQ 235 (253)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEECCHHH
Confidence 999999999998764 899999999987 6888999999999999999987654
No 225
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=8.6e-36 Score=296.12 Aligned_cols=179 Identities=32% Similarity=0.532 Sum_probs=147.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+||||||||||+++|+|+.++. +|+|.++|+++.. ...++.++|++|++.+++ .||.||+.+... .
T Consensus 33 ~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~ 104 (220)
T cd03245 33 VAIIGRVGSGKSTLLKLLAGLYKPT--SGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----L 104 (220)
T ss_pred EEEECCCCCCHHHHHHHHhcCcCCC--CCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----C
Confidence 4899999999999999999998754 5999999998642 223556899999998887 699999976421 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccC------CCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRSAAKTFIG------DEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVV 151 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg------~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (602)
. .++++.++++.+++.+..++.+. ......||||||||++||++|+.+|++|+|||||+|||+.++..+.
T Consensus 105 ~----~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~ 180 (220)
T cd03245 105 A----DDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLK 180 (220)
T ss_pred C----CHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHH
Confidence 1 12456678888898876665431 1124579999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecC
Q 007474 152 KVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSG 194 (602)
Q Consensus 152 ~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 194 (602)
+.|++++++ +|||+++|+++ .+ +++|++++|++|++++.|
T Consensus 181 ~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 181 ERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 999999764 89999999986 34 899999999999998654
No 226
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.9e-35 Score=326.89 Aligned_cols=190 Identities=23% Similarity=0.423 Sum_probs=161.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc----cccceEEEEccCC---cCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR----LLKIISAYVMQDE---LLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~----~~~~~~~yv~Q~~---~l~~~lTV~e~l~f~~~~~ 73 (602)
++|+||||||||||||+|+|+.+|. +|+|.++|+++... ..++.++||+|++ .+++.+||.||+.+.....
T Consensus 281 ~~liG~NGsGKSTLl~~l~G~~~p~--~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~ 358 (501)
T PRK10762 281 LGVSGLMGAGRTELMKVLYGALPRT--SGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRY 358 (501)
T ss_pred EEEecCCCCCHHHHHHHHhCCCCCC--ceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhh
Confidence 4899999999999999999998754 59999999987432 2345689999995 5789999999998753211
Q ss_pred CC---CCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 007474 74 LP---RSVSKKRKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFK 149 (602)
Q Consensus 74 ~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 149 (602)
.. ......+.+++++++++.+||. +..++.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~ 433 (501)
T PRK10762 359 FSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGL-----LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKE 433 (501)
T ss_pred hcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhh-----CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHH
Confidence 10 0122334456789999999995 667777765 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 150 VVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 150 i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+.+.|++++++|.|||++||++. ++.++||++++|++|+++..|++++
T Consensus 434 l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 481 (501)
T PRK10762 434 IYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHEGRISGEFTREQ 481 (501)
T ss_pred HHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999888999999999987 6899999999999999999988766
No 227
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-35 Score=302.28 Aligned_cols=188 Identities=24% Similarity=0.362 Sum_probs=153.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCC--C-CCceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIE--K-ESLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~--~-~~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+|+||||||||+++|+|+++ + .+.+|+|.++|+++.. ...++.++|++|++.+++. ||+||+.+....
T Consensus 53 ~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~ 131 (271)
T PRK14238 53 TAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKI 131 (271)
T ss_pred EEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHh
Confidence 58999999999999999999986 2 1357999999998742 1345678999999988874 999999986543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLR----SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAF 148 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (602)
. ....+...++.+.++++.+++. +..++. ++.||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 132 ~--~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~-----~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~ 204 (271)
T PRK14238 132 H--GIKDKKTLDEIVEKSLRGAAIWDELKDRLHDN-----AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTL 204 (271)
T ss_pred c--CCCcHHHHHHHHHHHHHHcCCcchHHHHHhcC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHH
Confidence 2 1112223345677888887543 333333 4469999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 149 KVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 149 ~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.+.|+++++ ++|||+++|+++ ++.+++|++++|++|+++..|++.+
T Consensus 205 ~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~ 252 (271)
T PRK14238 205 KVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLNGYVNEYDDTDK 252 (271)
T ss_pred HHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999976 799999999987 5888999999999999999987655
No 228
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-35 Score=328.61 Aligned_cols=191 Identities=20% Similarity=0.415 Sum_probs=160.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc----cccceEEEEccCC---cCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR----LLKIISAYVMQDE---LLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~----~~~~~~~yv~Q~~---~l~~~lTV~e~l~f~~~~~ 73 (602)
++|+||||||||||+|+|+|++++ +.+|+|.++|++++.. ..++.++||+|+. .+++.+||.||+.+.....
T Consensus 291 ~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~ 369 (506)
T PRK13549 291 LGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDR 369 (506)
T ss_pred EEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhh
Confidence 489999999999999999999863 1369999999987421 2245689999985 4788999999998753211
Q ss_pred CC--CCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 74 LP--RSVSKKRKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 74 ~~--~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
.. ....+.+.+++++++++.+++. +..++.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l 444 (506)
T PRK13549 370 FTGGSRIDDAAELKTILESIQRLKVKTASPELAIAR-----LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEI 444 (506)
T ss_pred hccCcccChHHHHHHHHHHHHhcCccCCCccccccc-----CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHH
Confidence 11 0112344557799999999996 567777765 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|++++++|+|||++||+++ ++.++||++++|++|+++..|++++
T Consensus 445 ~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 445 YKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEecccc
Confidence 9999999988999999999987 6889999999999999999887765
No 229
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=5.7e-36 Score=301.03 Aligned_cols=182 Identities=29% Similarity=0.449 Sum_probs=143.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+||||||||||+++|+|+.++ .+|+|.++|.++.. ...++.++|++|++.+++ .||+||+.+....+
T Consensus 32 ~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---- 104 (238)
T cd03249 32 VALVGSSGCGKSTVVSLLERFYDP--TSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA---- 104 (238)
T ss_pred EEEEeCCCCCHHHHHHHHhccCCC--CCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC----
Confidence 489999999999999999999875 46999999988642 223456899999988876 69999998743211
Q ss_pred CCHHHHHH-----HHHHHHHHc--CCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 78 VSKKRKRE-----RVEALIDQL--GLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 78 ~~~~~~~~-----~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
..++..+ .+.+.++.+ ++....++ .++.|||||||||+||++|+.+|++++|||||+|||+.++..+
T Consensus 105 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l 178 (238)
T cd03249 105 -TDEEVEEAAKKANIHDFIMSLPDGYDTLVGE-----RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLV 178 (238)
T ss_pred -CHHHHHHHHHHcChHHHHHhhccccceeecc-----CCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence 1111111 122333333 33333333 3456999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|++++ +|+|||+++|+++ ++. .||++++|++|++++.|+.++
T Consensus 179 ~~~l~~~~-~g~~vi~~sh~~~-~~~-~~d~v~~l~~G~i~~~~~~~~ 223 (238)
T cd03249 179 QEALDRAM-KGRTTIVIAHRLS-TIR-NADLIAVLQNGQVVEQGTHDE 223 (238)
T ss_pred HHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEEEECCEEEEeCCHHH
Confidence 99999997 7999999999987 454 899999999999999887654
No 230
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.1e-35 Score=288.87 Aligned_cols=171 Identities=26% Similarity=0.337 Sum_probs=145.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc--ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES--RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
++|+||||||||||+++|+|++++. +|+|.++|+++.. ...++.++|++|++.+++.+||.||+.+....+ .
T Consensus 30 ~~l~G~nGsGKSTLl~~l~G~~~p~--~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~---~- 103 (204)
T PRK13538 30 VQIEGPNGAGKTSLLRILAGLARPD--AGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLH---G- 103 (204)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhc---C-
Confidence 4899999999999999999998854 5999999998743 234556899999999999999999998875432 1
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
.+.+++++++++.+||.+..++.++ .||||||||++||++|+++|++++|||||+|||+.++..+.+.|++++
T Consensus 104 --~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 176 (204)
T PRK13538 104 --PGDDEALWEALAQVGLAGFEDVPVR-----QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHA 176 (204)
T ss_pred --ccHHHHHHHHHHHcCCHHHhhCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 1234678999999999887777665 499999999999999999999999999999999999999999999998
Q ss_pred hcCcEEEEEEcCCcHHHHHHhhHHhhh
Q 007474 159 KSGSVVIMSIHQPSYRIFSLLNRLIFL 185 (602)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~~L 185 (602)
++|+|||+++|+++ .+-+.-+|++.+
T Consensus 177 ~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 177 EQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HCCCEEEEEecChh-hhccCCceEEec
Confidence 78999999999987 465544555544
No 231
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.9e-35 Score=329.02 Aligned_cols=188 Identities=27% Similarity=0.416 Sum_probs=159.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc------cccceEEEEccCC--cCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR------LLKIISAYVMQDE--LLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~------~~~~~~~yv~Q~~--~l~~~lTV~e~l~f~~~~ 72 (602)
++|+||||||||||+|+|+|+++ .+|+|.++|+++... .+++.++||+|+. .+++.+||.||+.+....
T Consensus 315 ~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~ 391 (529)
T PRK15134 315 LGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRV 391 (529)
T ss_pred EEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHh
Confidence 58999999999999999999974 369999999887431 1245689999996 488899999999886543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVV 151 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (602)
+. ...++.+.+++++++++.+||. +..++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.
T Consensus 392 ~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~ 465 (529)
T PRK15134 392 HQ-PTLSAAQREQQVIAVMEEVGLDPETRHRYPA-----EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQIL 465 (529)
T ss_pred cc-ccCChHHHHHHHHHHHHHcCCCHHHHhcCCc-----cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHH
Confidence 21 1123445567899999999997 45676665 49999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 152 KVLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 152 ~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+.|++++++ |+|||++||++. ++.++||++++|++|+++..|++++
T Consensus 466 ~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 512 (529)
T PRK15134 466 ALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQGEVVEQGDCER 512 (529)
T ss_pred HHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEEEcCHHH
Confidence 999999875 899999999987 5889999999999999999987655
No 232
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-35 Score=334.69 Aligned_cols=188 Identities=26% Similarity=0.394 Sum_probs=159.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc-------------c---cc-cceEEEEccCC--cCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES-------------R---LL-KIISAYVMQDE--LLFPMLT 61 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~-------------~---~~-~~~~~yv~Q~~--~l~~~lT 61 (602)
+||+||||||||||+++|+|++++. +|+|.++|..++. . .. ++.+|||+|++ .+++.+|
T Consensus 45 ~~lvG~nGsGKSTLl~~l~Gll~p~--~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~t 122 (623)
T PRK10261 45 LAIVGESGSGKSVTALALMRLLEQA--GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFT 122 (623)
T ss_pred EEEECCCCChHHHHHHHHHcCCCCC--CeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCC
Confidence 5899999999999999999998754 5999999974410 0 11 23689999997 6889999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc---ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCC
Q 007474 62 VEETLMFSAECRLPRSVSKKRKRERVEALIDQLGLRS---AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEP 138 (602)
Q Consensus 62 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEP 138 (602)
|.||+.+..+... ..++.+.+++++++++.+||.+ ..++.+. .|||||||||+||+||+.+|++||||||
T Consensus 123 v~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~-----~LSgGq~QRv~iA~AL~~~P~lLllDEP 195 (623)
T PRK10261 123 VGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQTILSRYPH-----QLSGGMRQRVMIAMALSCRPAVLIADEP 195 (623)
T ss_pred HHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc-----cCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 9999998765421 2355566788999999999963 3555554 5999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 139 TSGLDSTSAFKVVKVLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 139 tsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
|+|||+.++.++.++|++++++ |+|||+++|++. .+.++|||+++|++|+++..|++.+
T Consensus 196 t~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~~adri~vl~~G~i~~~g~~~~ 255 (623)
T PRK10261 196 TTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVAEIADRVLVMYQGEAVETGSVEQ 255 (623)
T ss_pred CCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEeeCCeecccCCHHH
Confidence 9999999999999999999865 899999999987 6889999999999999999888765
No 233
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.7e-35 Score=329.18 Aligned_cols=190 Identities=26% Similarity=0.429 Sum_probs=160.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEecccc------cc-cceEEEEccCCc--CCCCCCHHHHHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE---SLKGTVTLNGAVLESR------LL-KIISAYVMQDEL--LFPMLTVEETLMF 68 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~---~~~G~i~~~g~~~~~~------~~-~~~~~yv~Q~~~--l~~~lTV~e~l~f 68 (602)
++|+|||||||||||++|+|++++. +.+|+|.++|+++... .. ++.+|||+|++. +++.+||+|++.+
T Consensus 38 ~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~ 117 (529)
T PRK15134 38 LALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYE 117 (529)
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHH
Confidence 5899999999999999999999752 2579999999987431 11 246899999964 6778899999876
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc---cccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 007474 69 SAECRLPRSVSKKRKRERVEALIDQLGLRSA---AKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDST 145 (602)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~ 145 (602)
..... ...++.+.+++++++++.+||.+. .++.++ .|||||||||+||++|+.+|++|+|||||+|||+.
T Consensus 118 ~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~-----~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~ 190 (529)
T PRK15134 118 VLSLH--RGMRREAARGEILNCLDRVGIRQAAKRLTDYPH-----QLSGGERQRVMIAMALLTRPELLIADEPTTALDVS 190 (529)
T ss_pred HHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCc-----ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHH
Confidence 54321 123455667889999999999763 466655 59999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 146 SAFKVVKVLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 146 ~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++..+.+.|++++++ |+|||+++|++. .+.++|||+++|++|++++.|++.+
T Consensus 191 ~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~~G~i~~~g~~~~ 243 (529)
T PRK15134 191 VQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRVAVMQNGRCVEQNRAAT 243 (529)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999875 899999999987 5888999999999999999987765
No 234
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.3e-35 Score=327.91 Aligned_cols=189 Identities=32% Similarity=0.453 Sum_probs=158.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEEC-----------------------CEecc----------c---cccc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLN-----------------------GAVLE----------S---RLLK 44 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~-----------------------g~~~~----------~---~~~~ 44 (602)
++|+|||||||||||++|+|+.+..+.+|+|.++ |.++. . ...+
T Consensus 29 ~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 108 (520)
T TIGR03269 29 LGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIR 108 (520)
T ss_pred EEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccCHHHHHHhh
Confidence 5899999999999999999996211346999997 22210 0 1134
Q ss_pred ceEEEEccC-CcCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHH
Q 007474 45 IISAYVMQD-ELLFPMLTVEETLMFSAECRLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIG 123 (602)
Q Consensus 45 ~~~~yv~Q~-~~l~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 123 (602)
+.++||+|+ +.+++.+||+||+.+..... ..+..+.+++++++++.+||++..++.++ .|||||||||+||
T Consensus 109 ~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrv~iA 180 (520)
T TIGR03269 109 KRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRAVDLIEMVQLSHRITHIAR-----DLSGGEKQRVVLA 180 (520)
T ss_pred hcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCcc-----cCCHHHHHHHHHH
Confidence 568999997 67889999999999865432 23445566789999999999887777665 4999999999999
Q ss_pred HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 124 IDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK-SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 124 ~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++|+.+|++|||||||+|||+.++..+++.|+++++ .|+|||+++|++. .+.++||++++|++|++++.|++++
T Consensus 181 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 255 (520)
T TIGR03269 181 RQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE-VIEDLSDKAIWLENGEIKEEGTPDE 255 (520)
T ss_pred HHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEeCCEEeeecCHHH
Confidence 999999999999999999999999999999999976 4899999999987 5888999999999999999888766
No 235
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-35 Score=298.49 Aligned_cols=189 Identities=25% Similarity=0.421 Sum_probs=154.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCC----ceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKES----LKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~----~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~ 73 (602)
++|+||||||||||+++|+|+.++.. +.|++.++|+++.. ...++.++|++|++.+++.+||+||+.+.....
T Consensus 39 ~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~ 118 (257)
T PRK14246 39 FGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSH 118 (257)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhc
Confidence 58999999999999999999987543 12444444554421 234567899999999999999999999875432
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 007474 74 LPRSVSKKRKRERVEALIDQLGLRS----AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFK 149 (602)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 149 (602)
....+.+.+++++++++.+++.+ ..+.. ++.||||||||++||++|+.+|++++|||||+|||+.++..
T Consensus 119 --~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~ 191 (257)
T PRK14246 119 --GIKEKREIKKIVEECLRKVGLWKEVYDRLNSP-----ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQA 191 (257)
T ss_pred --CCCCHHHHHHHHHHHHHHcCCCccchhhhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHH
Confidence 11234455678899999999964 33443 44699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 150 VVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 150 i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+.+.|+++++ ++|||+++|++. .+.++||++++|++|+++..|+.++
T Consensus 192 l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~g~i~~~g~~~~ 238 (257)
T PRK14246 192 IEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYNGELVEWGSSNE 238 (257)
T ss_pred HHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999965 699999999986 5889999999999999999998765
No 236
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-35 Score=300.31 Aligned_cols=186 Identities=24% Similarity=0.356 Sum_probs=153.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE---SLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~---~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+||||||||||+++|+|+.++. +.+|+|.++|+++.. ...++.++|++|++.+++. ||.||+.+....
T Consensus 39 ~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~ 117 (264)
T PRK14243 39 TAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARI 117 (264)
T ss_pred EEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccccc-cHHHHHHhhhhh
Confidence 5899999999999999999987531 257999999998732 2345668999999988884 999999886543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLRS----AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAF 148 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (602)
+ ... .+.+++++++++.+++.+ ..++. ++.||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 118 ~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~-----~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 188 (264)
T PRK14243 118 N---GYK-GDMDELVERSLRQAALWDEVKDKLKQS-----GLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTL 188 (264)
T ss_pred c---Ccc-hHHHHHHHHHHHHhCchhhHHHHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 2 111 234466778888888743 23333 4469999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhc---------CCceeecCCccc
Q 007474 149 KVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLS---------HGQTVYSGTPAT 198 (602)
Q Consensus 149 ~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~---------~G~iv~~G~~~~ 198 (602)
.+.+.|+++++ ++|||+++|+++ ++.++||++++|+ +|+++..|++.+
T Consensus 189 ~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~ 245 (264)
T PRK14243 189 RIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEK 245 (264)
T ss_pred HHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHHH
Confidence 99999999976 589999999987 6999999999998 799999998765
No 237
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-35 Score=300.85 Aligned_cols=186 Identities=24% Similarity=0.338 Sum_probs=153.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE---SLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~---~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+||||||||||+++|+|+.++. +.+|+|.++|+++.. ...++.++|++|+..+++. ||.||+.+....
T Consensus 49 ~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~ 127 (274)
T PRK14265 49 IAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRA 127 (274)
T ss_pred EEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHh
Confidence 4899999999999999999997632 247999999998742 2345678999999888875 999999876443
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLR----SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAF 148 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (602)
+ ... .+.++.+++.++.+++. +..++. +..|||||||||+||++|+.+|++|||||||+|||+.++.
T Consensus 128 ~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~-----~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~ 198 (274)
T PRK14265 128 N---GYK-GNLDELVEDSLRRAAIWEEVKDKLKEK-----GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTR 198 (274)
T ss_pred c---Cch-HHHHHHHHHHHHHcccchhhHHHhcCC-----cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHH
Confidence 2 111 22345567788888874 233333 4469999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhc---------CCceeecCCccc
Q 007474 149 KVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLS---------HGQTVYSGTPAT 198 (602)
Q Consensus 149 ~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~---------~G~iv~~G~~~~ 198 (602)
.+.+.|+++++ ++|||+++|+++ ++.+++|++++|+ +|++++.|++++
T Consensus 199 ~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~ 255 (274)
T PRK14265 199 QVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQ 255 (274)
T ss_pred HHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHHH
Confidence 99999999975 689999999997 6889999999997 799999998766
No 238
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.1e-35 Score=336.58 Aligned_cols=181 Identities=28% Similarity=0.446 Sum_probs=153.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
+||+||||||||||+++|+|++ |. +|+|.+||++++. ..+++.++||+|++.+|+. |++||+.++. | +
T Consensus 379 vaIvG~SGsGKSTL~~lL~g~~-p~--~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~----~-~ 449 (588)
T PRK11174 379 IALVGPSGAGKTSLLNALLGFL-PY--QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGN----P-D 449 (588)
T ss_pred EEEECCCCCCHHHHHHHHhcCC-CC--CcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCC----C-C
Confidence 5899999999999999999998 54 6999999998754 4567889999999999986 9999998752 1 2
Q ss_pred CCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLR-------SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
.++ ++++++++..++. +-.||.+|+. ...||||||||++|||||+++|++|+||||||+||+.++..+
T Consensus 450 ~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~-G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i 524 (588)
T PRK11174 450 ASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQ-AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLV 524 (588)
T ss_pred CCH----HHHHHHHHHhCHHHHHHhcccccccccccC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence 233 3444555554443 3458889875 456999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|+++. +++|+|+++|+++ ..+.+|+|++|++|+++..|+.++
T Consensus 525 ~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~~e 569 (588)
T PRK11174 525 MQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDYAE 569 (588)
T ss_pred HHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCHHH
Confidence 99999885 5899999999985 567899999999999999998766
No 239
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-35 Score=306.41 Aligned_cols=191 Identities=24% Similarity=0.370 Sum_probs=158.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCC---CCceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEK---ESLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~---~~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+|||||||||||++|+|+.++ .+.+|+|.++|+++.. ...++.++||+|++.+++ .|++||+.|....
T Consensus 111 v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~ 189 (329)
T PRK14257 111 TAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRN 189 (329)
T ss_pred EEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHh
Confidence 589999999999999999999753 2357999999999852 234667999999998885 7999999986432
Q ss_pred cCCCCCCH-HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 007474 73 RLPRSVSK-KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVV 151 (602)
Q Consensus 73 ~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (602)
. ...+ +..++.+.++++.++|.+..++.++ +....||||||||++|||||+.+|+||+|||||+|||+.+...+.
T Consensus 190 ~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~-~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~ 265 (329)
T PRK14257 190 N---GINDRKILEKIVEKSLKSAALWDEVKDDLD-KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIE 265 (329)
T ss_pred c---CCChHHHHHHHHHHHHHHcCCcchhhhhhh-CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHH
Confidence 1 1222 2234567889999988654444443 345579999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 152 KVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 152 ~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+.|+++++ ++|||+++|++. .+.+++||+++|++|+++..|++.+
T Consensus 266 ~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~G~i~e~g~~~~ 310 (329)
T PRK14257 266 ELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQGWIEEAGETKT 310 (329)
T ss_pred HHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999876 699999999987 5888999999999999999998876
No 240
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-35 Score=296.76 Aligned_cols=192 Identities=24% Similarity=0.380 Sum_probs=156.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCC--C-CCceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIE--K-ESLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~--~-~~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+||||||||||+++|+|+.+ + .+.+|+|.+||+++.. ...++.++|++|++.+++. |+.||+.+....
T Consensus 32 ~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~ 110 (250)
T PRK14266 32 TALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRI 110 (250)
T ss_pred EEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhh
Confidence 48999999999999999999864 2 1257999999998743 1335678999999988885 999999876432
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK 152 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (602)
. .....+..++++.++++.+|+.+...... +...+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+
T Consensus 111 ~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~ 187 (250)
T PRK14266 111 H--GEDDEDFIEERVEESLKAAALWDEVKDKL-DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIED 187 (250)
T ss_pred c--CCCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 2 11223445678899999999854221111 23345699999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 153 VLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 153 ~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.|+++++ ++|||+++|++. ++.+.+|++++|++|++++.|++++
T Consensus 188 ~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14266 188 LIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLNGEIIESGLTDQ 231 (250)
T ss_pred HHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEECCeEEEeCCHHH
Confidence 9999964 899999999987 6899999999999999999998765
No 241
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=4.6e-35 Score=287.01 Aligned_cols=168 Identities=27% Similarity=0.374 Sum_probs=146.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc--ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES--RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
++|+|+||||||||+++|+|+.++. +|+|.++|.++.. ...++.++|++|++.+++.+||+||+.+....
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~------ 100 (201)
T cd03231 29 LQVTGPNGSGKTTLLRILAGLSPPL--AGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD------ 100 (201)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhccc------
Confidence 5899999999999999999998754 5999999988643 23456789999999999999999999874311
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
..+++++++++.+|+.+..++.+. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 101 ---~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 172 (201)
T cd03231 101 ---HSDEQVEEALARVGLNGFEDRPVA-----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC 172 (201)
T ss_pred ---ccHHHHHHHHHHcCChhhhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 124578899999999987777665 499999999999999999999999999999999999999999999998
Q ss_pred hcCcEEEEEEcCCcHHHHHHhhHHhhh
Q 007474 159 KSGSVVIMSIHQPSYRIFSLLNRLIFL 185 (602)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~~L 185 (602)
++|+|+|+++|++. ++...+|+++.+
T Consensus 173 ~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 173 ARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred hCCCEEEEEecCch-hhhhccceeEec
Confidence 88999999999987 578889998776
No 242
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.3e-35 Score=315.96 Aligned_cols=192 Identities=31% Similarity=0.478 Sum_probs=168.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC--CceeEEEECCEeccc---c----cccceEEEEccCC--cCCCCCCHHHHHHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE--SLKGTVTLNGAVLES---R----LLKIISAYVMQDE--LLFPMLTVEETLMFS 69 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~--~~~G~i~~~g~~~~~---~----~~~~~~~yv~Q~~--~l~~~lTV~e~l~f~ 69 (602)
+||+|.|||||||+.++|.|++++. ..+|+|.++|+++.. . ...+.++||+|++ .+.|-+||.+.+.-.
T Consensus 38 lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~ 117 (539)
T COG1123 38 LGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREA 117 (539)
T ss_pred EEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHH
Confidence 5899999999999999999999854 257999999987632 1 2335689999996 577889999998876
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 007474 70 AECRLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFK 149 (602)
Q Consensus 70 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 149 (602)
...+. ..++++.++++.++|+.+||.+.... +.++++|||||||||.||+||+.+|++|++||||++||+.++.+
T Consensus 118 ~~~h~--~~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~q 192 (539)
T COG1123 118 LRLHG--KGSRAEARKRAVELLEQVGLPDPERR---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQ 192 (539)
T ss_pred HHHhc--cccHHHHHHHHHHHHHHcCCCChhhh---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHH
Confidence 66543 23478889999999999999986654 56788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 150 VVKVLGEIAK-SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 150 i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
|+++|+++.+ .|.++|++|||+. -+.++||||++|++|++|+.|++++
T Consensus 193 IL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~~G~iVE~G~~~~ 241 (539)
T COG1123 193 ILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMYKGEIVETGPTEE 241 (539)
T ss_pred HHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEECCEEEEecCHHH
Confidence 9999999986 5999999999998 5999999999999999999999877
No 243
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-35 Score=327.48 Aligned_cols=190 Identities=22% Similarity=0.420 Sum_probs=160.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc----cccceEEEEccCC---cCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR----LLKIISAYVMQDE---LLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~----~~~~~~~yv~Q~~---~l~~~lTV~e~l~f~~~~~ 73 (602)
++|+||||||||||+|+|+|+.++ .+|+|.++|+++... ..++.++|++|++ .+++.+||.||+.+.....
T Consensus 282 ~~iiG~NGsGKSTLlk~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~ 359 (501)
T PRK11288 282 VGLFGLVGAGRSELMKLLYGATRR--TAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRH 359 (501)
T ss_pred EEEEcCCCCCHHHHHHHHcCCCcC--CCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchh
Confidence 589999999999999999999875 459999999987421 2245689999985 4899999999998753211
Q ss_pred C-CCC--CCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 007474 74 L-PRS--VSKKRKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFK 149 (602)
Q Consensus 74 ~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 149 (602)
. +.. ....+.+++++++++.+|+. +..++.+++ |||||||||+||++|+.+|++|||||||+|||+.++..
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~ 434 (501)
T PRK11288 360 HLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMN-----LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHE 434 (501)
T ss_pred hcccccccChHHHHHHHHHHHHhcCcccCCccCcccc-----CCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHH
Confidence 0 001 12333456789999999994 677888775 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 150 VVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 150 i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+++.|++++++|.|||++|||+. ++.++||++++|++|++++.|++++
T Consensus 435 l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 435 IYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred HHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999988999999999987 6899999999999999999998766
No 244
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3.9e-35 Score=326.32 Aligned_cols=190 Identities=22% Similarity=0.318 Sum_probs=158.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc----cccceEEEEccCC---cCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR----LLKIISAYVMQDE---LLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~----~~~~~~~yv~Q~~---~l~~~lTV~e~l~f~~~~~ 73 (602)
++|+|||||||||||++|+|+.+|. +|+|.++|+++... ..++.++|++|+. .+++.+||.||+.......
T Consensus 292 ~~l~G~NGsGKSTLl~~i~Gl~~p~--~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~ 369 (510)
T PRK15439 292 LGLAGVVGAGRTELAETLYGLRPAR--GGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNR 369 (510)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCC--CcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhh
Confidence 5899999999999999999998754 59999999987532 1234689999984 5888999999986431111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 007474 74 LPRSVSKKRKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK 152 (602)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (602)
.+......+.+++++++++.+||+ +..++.+++ |||||||||+||++|+.+|++|||||||+|||+.++..+.+
T Consensus 370 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~ 444 (510)
T PRK15439 370 RGFWIKPARENAVLERYRRALNIKFNHAEQAART-----LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQ 444 (510)
T ss_pred hccccChHHHHHHHHHHHHHcCCCCCCccCcccc-----CCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHH
Confidence 110111233456789999999997 677777764 99999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 153 VLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 153 ~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.|++++++|.|||+++|++. ++.++||++++|++|+++..|++++
T Consensus 445 ~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 445 LIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred HHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999988999999999997 6899999999999999999887755
No 245
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-35 Score=297.09 Aligned_cols=183 Identities=27% Similarity=0.443 Sum_probs=144.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+|||||||||||++|+|+.++. +|+|.++|.++.. ...++.++|++|++.+++. ||+||+.+....
T Consensus 32 ~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~----- 103 (229)
T cd03254 32 VAIVGPTGAGKTTLINLLMRFYDPQ--KGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN----- 103 (229)
T ss_pred EEEECCCCCCHHHHHHHHhcCcCCC--CCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCC-----
Confidence 4899999999999999999998754 5999999988743 2345668999999988876 999999764211
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccc------CCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRSAAKTFI------GDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVV 151 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~v------g~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (602)
.. .+++++.++.+++.+..+... -+..++.|||||||||+||++|+.+|++++|||||+|||+.++..+.
T Consensus 104 ~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~ 179 (229)
T cd03254 104 AT----DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ 179 (229)
T ss_pred CC----HHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHH
Confidence 11 123344444444433222211 01234569999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 152 KVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 152 ~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+.|++++ +|+|||++||+++ ++ +.+|++++|++|++++.|+.++
T Consensus 180 ~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~g~~~~~~~~~~ 223 (229)
T cd03254 180 EALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDDGKIIEEGTHDE 223 (229)
T ss_pred HHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeCCeEEEeCCHHH
Confidence 9999996 5899999999986 45 5699999999999998886544
No 246
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=6.7e-35 Score=294.98 Aligned_cols=193 Identities=26% Similarity=0.272 Sum_probs=153.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc---c-ccceEEEEccCCcCCCCCCHHHHHHHHHH-hcC-
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR---L-LKIISAYVMQDELLFPMLTVEETLMFSAE-CRL- 74 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~---~-~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~-~~~- 74 (602)
++|+||||||||||+++|+|+.+..+.+|+|.++|+++... . .++.++|++|++.+++.+|+.+++.+... .+.
T Consensus 30 ~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 109 (248)
T PRK09580 30 HAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSY 109 (248)
T ss_pred EEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcc
Confidence 48999999999999999999953113569999999876431 1 23458999999988988888877654321 110
Q ss_pred -CC-CCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 007474 75 -PR-SVSKKRKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVV 151 (602)
Q Consensus 75 -~~-~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (602)
.. .....+.+++++++++.+++. +..++.+. +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~ 185 (248)
T PRK09580 110 RGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVA 185 (248)
T ss_pred cccccchHHHHHHHHHHHHHHcCCChhhcccCCC----CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHH
Confidence 00 011223456788999999995 44444432 259999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEEcCCcHHHHHH-hhHHhhhcCCceeecCCccc
Q 007474 152 KVLGEIAKSGSVVIMSIHQPSYRIFSL-LNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 152 ~~l~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~ 198 (602)
+.|++++++|+|||+++|++. .+... +|++++|++|++++.|+++.
T Consensus 186 ~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~g~i~~~g~~~~ 232 (248)
T PRK09580 186 DGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTL 232 (248)
T ss_pred HHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEECCeEEEeCCHHH
Confidence 999999888899999999986 46665 89999999999999998664
No 247
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=4.1e-35 Score=292.40 Aligned_cols=180 Identities=26% Similarity=0.391 Sum_probs=148.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+||||||||||+++|+|+.++ .+|+|.++|+++.. ...++.++|++|++.+++. ||+||+.+....+.
T Consensus 36 ~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~--- 109 (225)
T PRK10247 36 KLITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN--- 109 (225)
T ss_pred EEEECCCCCCHHHHHHHHhcccCC--CCCeEEECCEEcCcCCHHHHHhccEEEecccccccc-cHHHHHHhHHhhcC---
Confidence 489999999999999999999875 46999999998643 2245678999999888874 99999987544321
Q ss_pred CCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
. ...+++++++++.+|+. ...++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 110 ~--~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (225)
T PRK10247 110 Q--QPDPAIFLDDLERFALPDTILTKNIA-----ELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHR 182 (225)
T ss_pred C--ChHHHHHHHHHHHcCCChHHhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 1 12245678999999996 45666554 5999999999999999999999999999999999999999999999
Q ss_pred HHhc-CcEEEEEEcCCcHHHHHHhhHHhhhc-CCceeecCC
Q 007474 157 IAKS-GSVVIMSIHQPSYRIFSLLNRLIFLS-HGQTVYSGT 195 (602)
Q Consensus 157 l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~-~G~iv~~G~ 195 (602)
++++ |.|||+++|+++ ++ +.+|++++|+ ++..+..|.
T Consensus 183 ~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 183 YVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred HHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHhhhh
Confidence 9864 899999999987 45 5799999995 555566664
No 248
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.5e-35 Score=326.88 Aligned_cols=186 Identities=25% Similarity=0.404 Sum_probs=156.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEEC-CEe---ccc------ccccceEEEEccCCcCCCCCCHHHHHHHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLN-GAV---LES------RLLKIISAYVMQDELLFPMLTVEETLMFSA 70 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~-g~~---~~~------~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~ 70 (602)
++|+||||||||||+++|+|++++ .+|+|.++ |.+ +.. ...++.++|++|++.+++.+||.||+.+..
T Consensus 313 ~~l~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~ 390 (520)
T TIGR03269 313 FGIVGTSGAGKTTLSKIIAGVLEP--TSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAI 390 (520)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHH
Confidence 589999999999999999999875 46999996 532 211 122456899999998999999999998754
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHcCCCc-----ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 007474 71 ECRLPRSVSKKRKRERVEALIDQLGLRS-----AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDST 145 (602)
Q Consensus 71 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~ 145 (602)
.+. .++++.+++++++++.+||.+ ..++.++ .|||||||||+||++|+.+|++|||||||+|||+.
T Consensus 391 ~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~-----~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~ 461 (520)
T TIGR03269 391 GLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYPD-----ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPI 461 (520)
T ss_pred HcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 321 233445578899999999975 3555555 59999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 146 SAFKVVKVLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 146 ~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++..+++.|++++++ |.|||+++|++. ++.++||++++|++|+++..|++++
T Consensus 462 ~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 514 (520)
T TIGR03269 462 TKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRDGKIVKIGDPEE 514 (520)
T ss_pred HHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999865 899999999987 6889999999999999999887655
No 249
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=4.5e-35 Score=325.45 Aligned_cols=191 Identities=22% Similarity=0.426 Sum_probs=159.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc----ccccceEEEEccCC---cCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES----RLLKIISAYVMQDE---LLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~----~~~~~~~~yv~Q~~---~l~~~lTV~e~l~f~~~~~ 73 (602)
++|+||||||||||||+|+|+.+| +.+|+|.++|+++.. ...++.++||+|+. .+++.+||+||+.+...-.
T Consensus 289 ~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~ 367 (500)
T TIGR02633 289 LGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKS 367 (500)
T ss_pred EEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhh
Confidence 589999999999999999999874 136999999998743 12345689999995 5899999999998753211
Q ss_pred CC--CCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 74 LP--RSVSKKRKRERVEALIDQLGLRS-AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 74 ~~--~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
.. ....+.+.+++++++++.+++.+ ..++.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 442 (500)
T TIGR02633 368 FCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGR-----LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEI 442 (500)
T ss_pred hccCCcCCHHHHHHHHHHHHHhcCccCCCccCcccc-----CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHH
Confidence 10 01233445677899999999974 56777764 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|++++++|.|||++||+++ ++.++||++++|++|+++..++.++
T Consensus 443 ~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 443 YKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEcccc
Confidence 9999999988999999999997 6899999999999999998775543
No 250
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-35 Score=279.96 Aligned_cols=143 Identities=34% Similarity=0.587 Sum_probs=130.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc--ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES--RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
++|+||||||||||+++|+|+.++. +|+|.++|+++.. ...++.++|++|++.+++.+||.||+.
T Consensus 29 ~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~----------- 95 (173)
T cd03230 29 YGLLGPNGAGKTTLIKIILGLLKPD--SGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK----------- 95 (173)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh-----------
Confidence 4899999999999999999998754 6999999998753 234567899999999999999999873
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 96 ---------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~ 142 (173)
T cd03230 96 ---------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK 142 (173)
T ss_pred ---------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998
Q ss_pred hcCcEEEEEEcCCcHHHHHHhhHHhhhcCCce
Q 007474 159 KSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQT 190 (602)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 190 (602)
++|.|+|+++|++. ++.+.+|++++|++|++
T Consensus 143 ~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 143 KEGKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred HCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 88999999999987 68889999999999874
No 251
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.6e-36 Score=278.53 Aligned_cols=190 Identities=26% Similarity=0.453 Sum_probs=168.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+|||||||||||.+++.+++.+ +|+|.++|.+++. +...+.++.+-|+.++...+||+|-+.|+..-. ..+
T Consensus 30 Ts~IGPNGAGKSTLLS~~sRL~~~d--~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPY-SqG 106 (252)
T COG4604 30 TSIIGPNGAGKSTLLSMMSRLLKKD--SGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPY-SQG 106 (252)
T ss_pred eEEECCCCccHHHHHHHHHHhcccc--CceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcc-cCC
Confidence 5899999999999999999998854 5999999999864 345566788999999999999999999873221 123
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEI 157 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (602)
....+.+..+++.++.++|++..|+...+ ||||||||.-||..++.+.+.++||||.++||...+.++|+.||++
T Consensus 107 Rlt~eD~~~I~~aieyl~L~~l~dryLd~-----LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrl 181 (252)
T COG4604 107 RLTKEDRRIINEAIEYLHLEDLSDRYLDE-----LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRL 181 (252)
T ss_pred CCchHHHHHHHHHHHHhcccchHHHhHHh-----cccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHH
Confidence 34567888999999999999999988765 9999999999999999999999999999999999999999999999
Q ss_pred Hhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccch
Q 007474 158 AKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPATD 199 (602)
Q Consensus 158 ~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 199 (602)
+++ |+||+++.||.. ....++|+|+-|++|+++..|++++.
T Consensus 182 a~el~KtiviVlHDIN-fAS~YsD~IVAlK~G~vv~~G~~~ei 223 (252)
T COG4604 182 ADELGKTIVVVLHDIN-FASCYSDHIVALKNGKVVKQGSPDEI 223 (252)
T ss_pred HHHhCCeEEEEEeccc-HHHhhhhheeeecCCEEEecCCHHHh
Confidence 986 999999999998 58889999999999999999999873
No 252
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.7e-35 Score=315.69 Aligned_cols=188 Identities=30% Similarity=0.453 Sum_probs=161.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEec--cc---ccccceEEEEccCC--cCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVL--ES---RLLKIISAYVMQDE--LLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~--~~---~~~~~~~~yv~Q~~--~l~~~lTV~e~l~f~~~~~ 73 (602)
+||+|+||||||||.++|+|+.+| .+|+|.++|.+. +. ...++.+-+|+||+ .+.|.+||++++.-.....
T Consensus 320 lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~ 397 (539)
T COG1123 320 LGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIH 397 (539)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhh
Confidence 589999999999999999999986 459999999873 21 22445677888885 6899999999998776544
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 007474 74 LPRSVSKKRKRERVEALIDQLGLRS-AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK 152 (602)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (602)
.+ ....+.+++++++++.+||.. ..++ ++.+||||||||++|||||+.+|++|++|||||.||+..+.++++
T Consensus 398 ~~--~~~~~~~~rv~~ll~~VgL~~~~l~r-----yP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~Vln 470 (539)
T COG1123 398 GG--GSGAERRARVAELLELVGLPPEFLDR-----YPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470 (539)
T ss_pred cc--cchHHHHHHHHHHHHHcCCCHHHHhc-----CchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHH
Confidence 32 235677789999999999985 3444 455699999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 153 VLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 153 ~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+|+++.++ |.|.+++|||.. .+.++||||++|++|++|..|+.++
T Consensus 471 Ll~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~G~iVE~G~~~~ 516 (539)
T COG1123 471 LLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYDGRIVEEGPTEK 516 (539)
T ss_pred HHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEECCeEEEeCCHHH
Confidence 99999875 999999999997 5999999999999999999996654
No 253
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=5.5e-35 Score=282.02 Aligned_cols=147 Identities=29% Similarity=0.514 Sum_probs=131.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc----cccceEEEEccCC---cCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR----LLKIISAYVMQDE---LLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~----~~~~~~~yv~Q~~---~l~~~lTV~e~l~f~~~~~ 73 (602)
++|+||||||||||+++|+|.+++. +|+|.++|+++... ..++.++|++|+. .+++.+|++||+.+...
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-- 104 (182)
T cd03215 29 VGIAGLVGNGQTELAEALFGLRPPA--SGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL-- 104 (182)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh--
Confidence 4899999999999999999998854 59999999987532 2356789999984 58889999999976321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 007474 74 LPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKV 153 (602)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (602)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.
T Consensus 105 --------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~ 146 (182)
T cd03215 105 --------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRL 146 (182)
T ss_pred --------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCce
Q 007474 154 LGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQT 190 (602)
Q Consensus 154 l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 190 (602)
|++++++|+|+|+++|+++ ++.+++|++++|++|++
T Consensus 147 l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 147 IRELADAGKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 9999877999999999986 68899999999999974
No 254
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.4e-34 Score=288.37 Aligned_cols=175 Identities=29% Similarity=0.389 Sum_probs=144.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEEC--CE--eccc---cc----ccceEEEEccCCcCCCCCCHHHHHHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLN--GA--VLES---RL----LKIISAYVMQDELLFPMLTVEETLMFS 69 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~--g~--~~~~---~~----~~~~~~yv~Q~~~l~~~lTV~e~l~f~ 69 (602)
++|+||||||||||+++|+|++++. +|+|.++ |+ ++.. .. .++.++|++|++.+++.+||+|++.+.
T Consensus 37 ~~l~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 114 (224)
T TIGR02324 37 VALSGPSGAGKSTLLKSLYANYLPD--SGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEP 114 (224)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHH
Confidence 4899999999999999999998754 5999998 43 4321 11 134689999999999999999999876
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 007474 70 AECRLPRSVSKKRKRERVEALIDQLGLRSA-AKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAF 148 (602)
Q Consensus 70 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (602)
.... ...+.+..+++.++++.+|+.+. .+..+. .||||||||++||++|+.+|++++|||||+|||+.++.
T Consensus 115 ~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~ 186 (224)
T TIGR02324 115 LLER---GVPREAARARARELLARLNIPERLWHLPPA-----TFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQ 186 (224)
T ss_pred HHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 5422 23334456788999999999763 455544 59999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhc
Q 007474 149 KVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLS 186 (602)
Q Consensus 149 ~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 186 (602)
.+.+.|++++++|+|||+++|++. .+.+++|+++.+.
T Consensus 187 ~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 187 VVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 999999999878999999999975 5778999987763
No 255
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.1e-35 Score=312.40 Aligned_cols=188 Identities=29% Similarity=0.440 Sum_probs=169.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc----ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcC-C
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES----RLLKIISAYVMQDELLFPMLTVEETLMFSAECRL-P 75 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~-~ 75 (602)
+||+|.||||||||+|+|+|.++| ++|+|.+||++... ......++.|+|+..+.|+|||.||+.++...+. .
T Consensus 37 ~aL~GeNGAGKSTLmKiLsGv~~p--~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~ 114 (500)
T COG1129 37 HALLGENGAGKSTLMKILSGVYPP--DSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRF 114 (500)
T ss_pred EEEecCCCCCHHHHHHHHhCcccC--CCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCC
Confidence 489999999999999999999985 45999999998753 2344568999999999999999999988766544 2
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 007474 76 RSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLG 155 (602)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (602)
..+.+++.+++..++|+.+|+....++++++ ||+||||.|.||+||..++++|+|||||+.|+...+..+.+.++
T Consensus 115 g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~-----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir 189 (500)
T COG1129 115 GLIDRKAMRRRARELLARLGLDIDPDTLVGD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIR 189 (500)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCChhhhhhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 3467788889999999999996558888886 99999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCc
Q 007474 156 EIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTP 196 (602)
Q Consensus 156 ~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 196 (602)
+|+++|.+||++||.++ |++++|||+.+|.+|+.+..++.
T Consensus 190 ~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 190 RLKAQGVAIIYISHRLD-EVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeCCEEeeeccc
Confidence 99999999999999997 89999999999999999998883
No 256
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=3.5e-35 Score=332.32 Aligned_cols=183 Identities=28% Similarity=0.431 Sum_probs=154.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
+||+||||||||||+++|+|+++|. +|+|.+||.+++. ..+++.++||+|++.+|+. |++||+.++. +..
T Consensus 372 ~aIvG~sGsGKSTLl~ll~gl~~p~--~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~~ 444 (582)
T PRK11176 372 VALVGRSGSGKSTIANLLTRFYDID--EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFND-TIANNIAYAR----TEQ 444 (582)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCC--CceEEECCEEhhhcCHHHHHhhceEEccCceeecc-hHHHHHhcCC----CCC
Confidence 5899999999999999999999864 5999999998754 3567789999999999985 9999997642 111
Q ss_pred CCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLR-------SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
.+ +++++++++..|+. +-.||.+|+. .+.||||||||++|||+|+++|++|+||||||+||+.++..+
T Consensus 445 ~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~-g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i 519 (582)
T PRK11176 445 YS----REQIEEAARMAYAMDFINKMDNGLDTVIGEN-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519 (582)
T ss_pred CC----HHHHHHHHHHhCcHHHHHhcccccCceeCCC-CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHH
Confidence 22 34555666666543 3458888864 456999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|+++. +++|+|+++|+++ ..+.||+|++|++|+++..|+.++
T Consensus 520 ~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g~~~~ 564 (582)
T PRK11176 520 QAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHAE 564 (582)
T ss_pred HHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999985 4799999999985 578899999999999999998766
No 257
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-35 Score=295.89 Aligned_cols=182 Identities=29% Similarity=0.455 Sum_probs=143.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+||||||||||+++|+|+.++ .+|+|.++|+++.. ...++.++|++|+..+++ .||+||+.+... .
T Consensus 30 ~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~ 101 (236)
T cd03253 30 VAIVGPSGSGKSTILRLLFRFYDV--SSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRP-----D 101 (236)
T ss_pred EEEECCCCCCHHHHHHHHhcccCC--CCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCC-----C
Confidence 489999999999999999999875 46999999998743 234566899999998886 699999987532 1
Q ss_pred CCHHHHHH-----HHHHHHHHc--CCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 78 VSKKRKRE-----RVEALIDQL--GLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 78 ~~~~~~~~-----~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
....+..+ .+.+.++.+ ++.+..+. .++.||||||||++||++|+.+|++++|||||+|||+.++..+
T Consensus 102 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-----~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l 176 (236)
T cd03253 102 ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGE-----RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREI 176 (236)
T ss_pred CCHHHHHHHHHHcCcHHHHHhccccccchhhc-----CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 11111111 122333333 23322222 3456999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|+++++ |+|||+++|+++ .+ ..+|++++|++|+++..|+.++
T Consensus 177 ~~~l~~~~~-~~tiii~sh~~~-~~-~~~d~~~~l~~g~i~~~~~~~~ 221 (236)
T cd03253 177 QAALRDVSK-GRTTIVIAHRLS-TI-VNADKIIVLKDGRIVERGTHEE 221 (236)
T ss_pred HHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEECCEEEeeCCHHH
Confidence 999999987 999999999987 45 4599999999999998887554
No 258
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-34 Score=292.80 Aligned_cols=177 Identities=22% Similarity=0.312 Sum_probs=153.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+||||||||||+++|+|++++. +|+|.++|+ ++++.|+..+.+.+||.||+.+..... ....
T Consensus 53 ~~liG~NGsGKSTLlk~L~Gl~~p~--~G~I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~ 117 (264)
T PRK13546 53 IGLVGINGSGKSTLSNIIGGSLSPT--VGKVDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKR 117 (264)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCCC--ceEEEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCH
Confidence 4899999999999999999998854 599999985 246677777788899999998754432 2334
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKS 160 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~ 160 (602)
++..+.++++++.+++.+..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 118 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~ 192 (264)
T PRK13546 118 KEIKAMTPKIIEFSELGEFIYQPVK-----KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQ 192 (264)
T ss_pred HHHHHHHHHHHHHcCCchhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHC
Confidence 5556677889999999887776665 49999999999999999999999999999999999999999999999878
Q ss_pred CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 161 GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
|+|||+++|++. ++.+++|++++|++|+++..|+.++
T Consensus 193 g~tiIiisH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~ 229 (264)
T PRK13546 193 NKTIFFVSHNLG-QVRQFCTKIAWIEGGKLKDYGELDD 229 (264)
T ss_pred CCEEEEEcCCHH-HHHHHcCEEEEEECCEEEEeCCHHH
Confidence 999999999986 6888999999999999999998765
No 259
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-34 Score=295.96 Aligned_cols=187 Identities=22% Similarity=0.388 Sum_probs=154.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCC---ceeEEEECCEecc---c----ccccceEEEEccCCcCCCCCCHHHHHHHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKES---LKGTVTLNGAVLE---S----RLLKIISAYVMQDELLFPMLTVEETLMFSA 70 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~---~~G~i~~~g~~~~---~----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~ 70 (602)
++|+|+||||||||+++|+|+.++.+ .+|+|.++|+++. . ...++.++|++|++.+++. ||+||+.+..
T Consensus 45 ~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~ 123 (265)
T PRK14252 45 TALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGL 123 (265)
T ss_pred EEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHH
Confidence 58999999999999999999987422 5799999998653 1 1345678999999998886 9999998765
Q ss_pred HhcCCCCCCH-HHHHHHHHHHHHHcCCCc----ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 007474 71 ECRLPRSVSK-KRKRERVEALIDQLGLRS----AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDST 145 (602)
Q Consensus 71 ~~~~~~~~~~-~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~ 145 (602)
... .... ...+++++++++.+++.+ ..++.+ ..||||||||++||++|+.+|++++|||||+|||+.
T Consensus 124 ~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~ 195 (265)
T PRK14252 124 RIR---GVKRRSILEERVENALRNAALWDEVKDRLGDLA-----FNLSGGQQQRLCIARALATDPEILLFDEPTSALDPI 195 (265)
T ss_pred HHc---CCChHHHHHHHHHHHHHHcCCchhhhHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHH
Confidence 422 1222 233567888888888742 233333 459999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 146 SAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 146 ~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++..+.+.|+++++ ++|||+++|+++ ++.+++|++++|++|+++..|+.++
T Consensus 196 ~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 246 (265)
T PRK14252 196 ATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMYMGELIEFGATDT 246 (265)
T ss_pred HHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999976 689999999987 6889999999999999999987655
No 260
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-34 Score=285.21 Aligned_cols=169 Identities=27% Similarity=0.426 Sum_probs=142.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+||||||||||+++|+|+.++ .+|+|.++|+++.....++.++|++|++.+++.+||+||+.+....+ ..
T Consensus 31 ~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~~-- 103 (207)
T PRK13539 31 LVLTGPNGSGKTTLLRLIAGLLPP--AAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL---GG-- 103 (207)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc---CC--
Confidence 489999999999999999999875 45999999987642225566899999998889999999998765432 11
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKS 160 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~ 160 (602)
.+++++++++.+||.+..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 104 --~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 176 (207)
T PRK13539 104 --EELDIAAALEAVGLAPLAHLPFG-----YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ 176 (207)
T ss_pred --cHHHHHHHHHHcCCHHHHcCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC
Confidence 12458899999999877776665 49999999999999999999999999999999999999999999999888
Q ss_pred CcEEEEEEcCCcHHHHHHhhHHhhhc
Q 007474 161 GSVVIMSIHQPSYRIFSLLNRLIFLS 186 (602)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~~L~ 186 (602)
|+|||+++|++. ++.+ |+++.+.
T Consensus 177 ~~tiii~sH~~~-~~~~--~~~~~~~ 199 (207)
T PRK13539 177 GGIVIAATHIPL-GLPG--ARELDLG 199 (207)
T ss_pred CCEEEEEeCCch-hhcc--CcEEeec
Confidence 999999999986 4544 7776553
No 261
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.5e-34 Score=290.20 Aligned_cols=165 Identities=25% Similarity=0.296 Sum_probs=141.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+|||||||||||++|+|+.+|. +|+|.++|. .++|++|+....+.+||+|++.+......
T Consensus 28 ~~i~G~NGsGKSTLlk~L~G~~~p~--~G~i~~~g~---------~i~~~~q~~~~~~~~tv~e~l~~~~~~~~------ 90 (246)
T cd03237 28 IGILGPNGIGKTTFIKMLAGVLKPD--EGDIEIELD---------TVSYKPQYIKADYEGTVRDLLSSITKDFY------ 90 (246)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCC--CCeEEECCc---------eEEEecccccCCCCCCHHHHHHHHhhhcc------
Confidence 4899999999999999999998754 599999985 47999999887788999999976432110
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK- 159 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~- 159 (602)
......+++++.+||.+..++.+++ |||||||||+||++|+.+|++++|||||++||+.++..+.+.|+++++
T Consensus 91 -~~~~~~~~~l~~l~l~~~~~~~~~~-----LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 164 (246)
T cd03237 91 -THPYFKTEIAKPLQIEQILDREVPE-----LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAEN 164 (246)
T ss_pred -ccHHHHHHHHHHcCCHHHhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 1123467899999998877777664 999999999999999999999999999999999999999999999986
Q ss_pred cCcEEEEEEcCCcHHHHHHhhHHhhhcCCc
Q 007474 160 SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQ 189 (602)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 189 (602)
.|+|||+++|++. .+..++|++++|+++.
T Consensus 165 ~~~tiiivsHd~~-~~~~~~d~i~~l~~~~ 193 (246)
T cd03237 165 NEKTAFVVEHDII-MIDYLADRLIVFEGEP 193 (246)
T ss_pred cCCEEEEEeCCHH-HHHHhCCEEEEEcCCC
Confidence 4899999999987 6888999999996643
No 262
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-34 Score=299.76 Aligned_cols=194 Identities=25% Similarity=0.414 Sum_probs=155.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCC---CCceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEK---ESLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~---~~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~ 72 (602)
++|+|||||||||||++|+|++++ .+.+|+|.++|+++.. ...++.++|++|+..+++. ||+||+.+....
T Consensus 74 ~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~ 152 (305)
T PRK14264 74 TALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRK 152 (305)
T ss_pred EEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhh
Confidence 489999999999999999999853 1357999999998742 1235678999999888874 999999986542
Q ss_pred cCC---------CCCC-HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 007474 73 RLP---------RSVS-KKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGL 142 (602)
Q Consensus 73 ~~~---------~~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgL 142 (602)
... .... ....+++++++++.+++.+...... +..++.||||||||++||++|+.+|++|||||||+||
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgL 231 (305)
T PRK14264 153 HGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL-DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASAL 231 (305)
T ss_pred cccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh-cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 100 0011 2234567899999998853222222 2334569999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHH-hhhcCCceeecCCccc
Q 007474 143 DSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRL-IFLSHGQTVYSGTPAT 198 (602)
Q Consensus 143 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v-~~L~~G~iv~~G~~~~ 198 (602)
|+.++..+.+.|+++++ +.|||+++|+++ .+.+++|++ ++|++|+++..|++++
T Consensus 232 D~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d~i~~~l~~G~i~~~g~~~~ 286 (305)
T PRK14264 232 DPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISDQTAVFLTGGELVEYDDTDK 286 (305)
T ss_pred CHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcCEEEEEecCCEEEEeCCHHH
Confidence 99999999999999987 489999999987 588999996 5789999999998655
No 263
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=2.7e-35 Score=293.76 Aligned_cols=179 Identities=26% Similarity=0.441 Sum_probs=143.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+||||||||||+++|+|+.++. +|+|.++|+++.. ...++.++|++|++.+++ .||+||+.+.........
T Consensus 43 ~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~ 119 (226)
T cd03248 43 TALVGPSGSGKSTVVALLENFYQPQ--GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFEC 119 (226)
T ss_pred EEEECCCCCCHHHHHHHHhcCcCCC--CcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHH
Confidence 4899999999999999999998754 5999999987643 233556899999988876 599999987532110000
Q ss_pred CCHHHHHHHHHHHHHHc--CCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQL--GLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLG 155 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (602)
..+...+..++++++.+ |+++..+..+. .|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 120 ~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 194 (226)
T cd03248 120 VKEAAQKAHAHSFISELASGYDTEVGEKGS-----QLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALY 194 (226)
T ss_pred HHHHHHHcCcHHHHHhccccccchhhcCCC-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 00111122357888888 77766655544 599999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCce
Q 007474 156 EIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQT 190 (602)
Q Consensus 156 ~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 190 (602)
++++ ++|||+++|+++ ++ +.+|++++|++|++
T Consensus 195 ~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~~g~i 226 (226)
T cd03248 195 DWPE-RRTVLVIAHRLS-TV-ERADQILVLDGGRI 226 (226)
T ss_pred HHcC-CCEEEEEECCHH-HH-HhCCEEEEecCCcC
Confidence 9875 689999999987 46 45999999999874
No 264
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=7.6e-35 Score=335.28 Aligned_cols=179 Identities=29% Similarity=0.408 Sum_probs=153.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
+||+||||||||||+|+|+|+++|. +|+|.+||++++. ..+|+.++||+|++.+|+. |++||+.++. |
T Consensus 482 vaIvG~sGsGKSTLlklL~gl~~p~--~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~----~-- 552 (686)
T TIGR03797 482 VAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGA----P-- 552 (686)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCC----C--
Confidence 5899999999999999999999864 5999999998853 4578889999999999986 9999998742 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRS-------AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
.+ ++++.++++..|+.+ -.||.+|+. ...||||||||++|||||+++|++|+||||||+||+.+.+++
T Consensus 553 ~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~-G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i 627 (686)
T TIGR03797 553 LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEG-GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIV 627 (686)
T ss_pred CC----HHHHHHHHHHcCcHHHHHhccccccccccCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence 12 345666677766654 347888764 457999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|+++ ++|+|+++|+++ ..+.+|+|++|++|+++..|+.++
T Consensus 628 ~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~G~iv~~G~~~~ 670 (686)
T TIGR03797 628 SESLERL---KVTRIVIAHRLS--TIRNADRIYVLDAGRVVQQGTYDE 670 (686)
T ss_pred HHHHHHh---CCeEEEEecChH--HHHcCCEEEEEECCEEEEECCHHH
Confidence 9999886 589999999985 567899999999999999998766
No 265
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.7e-33 Score=320.72 Aligned_cols=184 Identities=29% Similarity=0.502 Sum_probs=153.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
+||+|||||||||++++|.+++.|. +|+|++||.++.. +..|..+|.|.|+|.+|. .|++||+.|+-. +
T Consensus 382 valVG~SGsGKST~i~LL~RfydP~--~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~-~tI~eNI~~G~~-----d 453 (1228)
T KOG0055|consen 382 VALVGPSGSGKSTLIQLLARFYDPT--SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFA-TTIRENIRYGKP-----D 453 (1228)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCC--CceEEEcCccchhcchHHHHhhcCeeeechhhhc-ccHHHHHhcCCC-----c
Confidence 5899999999999999999999864 5999999999864 456788999999998876 599999988531 2
Q ss_pred CCHHHHHHH-----HHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 007474 78 VSKKRKRER-----VEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK 152 (602)
Q Consensus 78 ~~~~~~~~~-----v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (602)
.++++..+. +.+.+ ..|.+-.||.+|+..+. ||||||||++|||||+.+|+|||||||||+||+.+.+.+.+
T Consensus 454 at~~~i~~a~k~ana~~fi--~~lp~g~~T~vge~g~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ 530 (1228)
T KOG0055|consen 454 ATREEIEEAAKAANAHDFI--LKLPDGYDTLVGERGVQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQE 530 (1228)
T ss_pred ccHHHHHHHHHHccHHHHH--HhhHHhhcccccCCCCC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHH
Confidence 222222221 22222 23556679999986664 99999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 153 VLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 153 ~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.|+++. +|+|.|+++|+.+ .+- .+|++++|++|++|+.|+++|
T Consensus 531 ALd~~~-~grTTivVaHRLS-tIr-naD~I~v~~~G~IvE~G~h~E 573 (1228)
T KOG0055|consen 531 ALDKAS-KGRTTIVVAHRLS-TIR-NADKIAVMEEGKIVEQGTHDE 573 (1228)
T ss_pred HHHHhh-cCCeEEEEeeehh-hhh-ccCEEEEEECCEEEEecCHHH
Confidence 998865 5899999999997 354 499999999999999999887
No 266
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.4e-34 Score=327.97 Aligned_cols=181 Identities=25% Similarity=0.412 Sum_probs=156.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
+||+|+||||||||+|+|+|+++|. +|+|.+||.+++. ..+++.++||+|++.+|+. |++||+.++. .
T Consensus 370 iaIvG~SGsGKSTLl~lL~gl~~p~--~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~ 440 (592)
T PRK10790 370 VALVGHTGSGKSTLASLLMGYYPLT--EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------D 440 (592)
T ss_pred EEEECCCCCCHHHHHHHHhcccCCC--CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------C
Confidence 5899999999999999999999865 5999999998753 4577889999999999997 9999998752 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRS-------AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
. .+++++++++.+|+.+ -.||.+|+ ....||||||||++|||||+++|++|+||||||+||+.++..+
T Consensus 441 ~----~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i 515 (592)
T PRK10790 441 I----SEEQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAI 515 (592)
T ss_pred C----CHHHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHH
Confidence 1 2345677777777654 34777876 3456999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|+++.+ ++|+|+++|+++ ....+|+|++|++|+++..|+.++
T Consensus 516 ~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G~~~~ 560 (592)
T PRK10790 516 QQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQGTHQQ 560 (592)
T ss_pred HHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999864 699999999985 567899999999999999998876
No 267
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=4.4e-34 Score=279.40 Aligned_cols=158 Identities=27% Similarity=0.363 Sum_probs=137.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc--ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES--RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
++|+||||||||||+++|+|.+++ .+|+|.++|+++.. ...++.++|++|++.+++.+||.||+.+....+.
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---- 102 (198)
T TIGR01189 29 LQVTGPNGIGKTTLLRILAGLLRP--DSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG---- 102 (198)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----
Confidence 489999999999999999999875 46999999998643 2234568999999989999999999987654321
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
. .+++++++++.+|+.+..++.+++ ||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++
T Consensus 103 --~-~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 174 (198)
T TIGR01189 103 --G-AQRTIEDALAAVGLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHL 174 (198)
T ss_pred --C-cHHHHHHHHHHcCCHHHhcCChhh-----cCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 1 134678999999999888777664 99999999999999999999999999999999999999999999998
Q ss_pred hcCcEEEEEEcCCc
Q 007474 159 KSGSVVIMSIHQPS 172 (602)
Q Consensus 159 ~~g~tvi~~~H~~~ 172 (602)
++|.|||+++|++.
T Consensus 175 ~~~~tii~~sH~~~ 188 (198)
T TIGR01189 175 ARGGIVLLTTHQDL 188 (198)
T ss_pred hCCCEEEEEEcccc
Confidence 88999999999986
No 268
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-34 Score=277.58 Aligned_cols=144 Identities=36% Similarity=0.572 Sum_probs=129.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc-----ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES-----RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLP 75 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~ 75 (602)
++|+||||||||||+++|+|.+++ .+|+|.++|+++.. ...++.++|++|++.+++.+|++||+.+.
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------ 100 (178)
T cd03229 29 VALLGPSGSGKSTLLRCIAGLEEP--DSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------ 100 (178)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec------
Confidence 489999999999999999999875 46999999998743 23456789999999999999999997542
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 007474 76 RSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLG 155 (602)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (602)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 101 ------------------------------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~ 144 (178)
T cd03229 101 ------------------------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLK 144 (178)
T ss_pred ------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999
Q ss_pred HHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCc
Q 007474 156 EIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQ 189 (602)
Q Consensus 156 ~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 189 (602)
+++++ |+|+|+++|++. ++.+++|++++|++|+
T Consensus 145 ~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 145 SLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 99887 899999999986 5778999999999885
No 269
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.3e-35 Score=308.94 Aligned_cols=181 Identities=30% Similarity=0.499 Sum_probs=155.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
+||+|+|||||||+||+|.+... .+|+|++||+++.. +..|+.+||||||..||.+ ||.+|+.|+.. .
T Consensus 381 VaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~-----s 451 (591)
T KOG0057|consen 381 VAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNP-----S 451 (591)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCC-----C
Confidence 58999999999999999999976 45999999999854 5688899999999999987 99999998742 2
Q ss_pred CCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLR-------SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
.+ .++|-++.++.|+. +-.+|.||+... .|||||||||+|||+++.||+|+++|||||.||..+..++
T Consensus 452 as----~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~-~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i 526 (591)
T KOG0057|consen 452 AS----DEEVVEACKRAGLHDVISRLPDGYQTLVGERGL-MLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREI 526 (591)
T ss_pred cC----HHHHHHHHHHcCcHHHHHhccccchhhHhhccc-ccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHH
Confidence 22 23455555555544 445777887544 4999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++.+++. ..|+|+|++.|+.+ ...-||+|++|++|++...|+.++
T Consensus 527 ~~~i~~~-~~~rTvI~IvH~l~--ll~~~DkI~~l~nG~v~e~gth~e 571 (591)
T KOG0057|consen 527 LDMIMDV-MSGRTVIMIVHRLD--LLKDFDKIIVLDNGTVKEYGTHSE 571 (591)
T ss_pred HHHHHHh-cCCCeEEEEEecch--hHhcCCEEEEEECCeeEEeccHHH
Confidence 9999993 46899999999975 788999999999999999998877
No 270
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-34 Score=308.31 Aligned_cols=177 Identities=24% Similarity=0.329 Sum_probs=152.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+|||||||||||++|+|+++|. +|+|.++|.+. ++.+...+.+.+||+||+.+..... ..+.
T Consensus 53 vgIiGpNGSGKSTLLkiLaGLl~P~--sGeI~I~G~~~----------~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~ 117 (549)
T PRK13545 53 VGIIGLNGSGKSTLSNLIAGVTMPN--KGTVDIKGSAA----------LIAISSGLNGQLTGIENIELKGLMM---GLTK 117 (549)
T ss_pred EEEEcCCCCCHHHHHHHHhCCCCCC--ceEEEECCEee----------eEEeccccCCCCcHHHHHHhhhhhc---CCCH
Confidence 4899999999999999999998754 59999999752 1223345677899999998754322 2344
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKS 160 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~ 160 (602)
.+..++++++++.++|.+..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++
T Consensus 118 ~e~~e~i~elLe~lgL~~~ld~~~~-----~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~ 192 (549)
T PRK13545 118 EKIKEIIPEIIEFADIGKFIYQPVK-----TYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQ 192 (549)
T ss_pred HHHHHHHHHHHHHcCChhHhhCCcc-----cCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhC
Confidence 5556778899999999888777765 49999999999999999999999999999999999999999999999888
Q ss_pred CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 161 GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
|+|||+++|+++ ++.++||++++|++|+++..|++++
T Consensus 193 G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~e 229 (549)
T PRK13545 193 GKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKE 229 (549)
T ss_pred CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999987 6889999999999999999998776
No 271
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2.9e-34 Score=290.81 Aligned_cols=171 Identities=29% Similarity=0.506 Sum_probs=145.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCC--CHHHHHHHHHHhcCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPML--TVEETLMFSAECRLPRSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~l--TV~e~l~f~~~~~~~~~~ 78 (602)
++|+||||||||||+++|+|++++. +|+|.++|. ..++|++|++.+++.+ |+.+++.+. + ..
T Consensus 33 ~~I~G~NGsGKSTLl~~i~Gl~~p~--~G~i~~~~~--------~~i~~v~q~~~~~~~l~~~~~~~~~~~-----~-~~ 96 (251)
T PRK09544 33 LTLLGPNGAGKSTLVRVVLGLVAPD--EGVIKRNGK--------LRIGYVPQKLYLDTTLPLTVNRFLRLR-----P-GT 96 (251)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCc--------cCEEEeccccccccccChhHHHHHhcc-----c-cc
Confidence 5899999999999999999998754 599999872 3489999998777764 778776431 1 11
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
.++++.++++.+||.+..++.+. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 97 ----~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~ 167 (251)
T PRK09544 97 ----KKEDILPALKRVQAGHLIDAPMQ-----KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLR 167 (251)
T ss_pred ----cHHHHHHHHHHcCChHHHhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 13467889999999988777665 499999999999999999999999999999999999999999999998
Q ss_pred hc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 159 KS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 159 ~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++ |+|||+++|+++ ++.+.+|++++|++ +++..|++++
T Consensus 168 ~~~g~tiiivsH~~~-~i~~~~d~i~~l~~-~i~~~g~~~~ 206 (251)
T PRK09544 168 RELDCAVLMVSHDLH-LVMAKTDEVLCLNH-HICCSGTPEV 206 (251)
T ss_pred HhcCCEEEEEecCHH-HHHHhCCEEEEECC-ceEeeCCHHH
Confidence 76 899999999987 68899999999964 7888887655
No 272
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=3.4e-34 Score=280.65 Aligned_cols=155 Identities=28% Similarity=0.398 Sum_probs=133.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc---c-ccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR---L-LKIISAYVMQDELLFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~---~-~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~ 76 (602)
++|+||||||||||+++|+|..+..+.+|+|.+||+++... . .+..++|++|++.+++.+|+++++.
T Consensus 29 ~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~--------- 99 (200)
T cd03217 29 HALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLR--------- 99 (200)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHh---------
Confidence 58999999999999999999952123569999999987542 1 2345899999999999989888760
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
. . .+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 100 -------------------------~-~----~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~ 149 (200)
T cd03217 100 -------------------------Y-V----NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINK 149 (200)
T ss_pred -------------------------h-c----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 0 0 124999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEEEEEcCCcHHHHH-HhhHHhhhcCCceeecCC
Q 007474 157 IAKSGSVVIMSIHQPSYRIFS-LLNRLIFLSHGQTVYSGT 195 (602)
Q Consensus 157 l~~~g~tvi~~~H~~~~~i~~-~~D~v~~L~~G~iv~~G~ 195 (602)
++++|+|||+++|+++ .+.+ .+|++++|++|+++..|+
T Consensus 150 ~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~ 188 (200)
T cd03217 150 LREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGD 188 (200)
T ss_pred HHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEcc
Confidence 9878999999999987 5666 799999999999999984
No 273
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.2e-34 Score=294.68 Aligned_cols=181 Identities=22% Similarity=0.359 Sum_probs=151.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+||||||||||+++|+|+++ . +|+|.++|.++.. ...++.++||+|++.+++. ||+||+.... .
T Consensus 33 ~~IvG~nGsGKSTLl~~L~gl~~-~--~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~ 102 (275)
T cd03289 33 VGLLGRTGSGKSTLLSAFLRLLN-T--EGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYG------K 102 (275)
T ss_pred EEEECCCCCCHHHHHHHHhhhcC-C--CcEEEECCEEhhhCCHHHHhhhEEEECCCcccchh-hHHHHhhhcc------C
Confidence 58999999999999999999986 3 5999999998753 2456679999999999985 9999996321 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCC------CCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRSAAKTFIGD------EQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVV 151 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~------~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (602)
.. .+++.++++.+||.+..+..++. +..+.||||||||++|||||+.+|+||+|||||+|||+.+...+.
T Consensus 103 ~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~ 178 (275)
T cd03289 103 WS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIR 178 (275)
T ss_pred CC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHH
Confidence 11 24567788889998665554432 134569999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 152 KVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 152 ~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+.|+++. +++|||+++|+++ .+. .+||+++|++|++++.|++++
T Consensus 179 ~~l~~~~-~~~tii~isH~~~-~i~-~~dri~vl~~G~i~~~g~~~~ 222 (275)
T cd03289 179 KTLKQAF-ADCTVILSEHRIE-AML-ECQRFLVIEENKVRQYDSIQK 222 (275)
T ss_pred HHHHHhc-CCCEEEEEECCHH-HHH-hCCEEEEecCCeEeecCCHHH
Confidence 9999875 4899999999985 454 599999999999999999877
No 274
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.6e-34 Score=325.75 Aligned_cols=182 Identities=32% Similarity=0.561 Sum_probs=157.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
+||+||||||||||+|+|+|.++|. +|+|.+||++++. ..+++.++||+|++.+|+. |++||+.++..
T Consensus 369 ~aivG~sGsGKSTL~~ll~g~~~p~--~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~------ 439 (574)
T PRK11160 369 VALLGRTGCGKSTLLQLLTRAWDPQ--QGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAP------ 439 (574)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCC------
Confidence 5899999999999999999998864 5999999998754 4567789999999999876 99999987531
Q ss_pred CCHHHHHHHHHHHHHHcCCCcc------cccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRSA------AKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVV 151 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~------~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (602)
+..++++.++++..++.+. .||.+|+. .+.||||||||++|||+|+++|++|+|||||++||+.++..+.
T Consensus 440 ---~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~-g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~ 515 (574)
T PRK11160 440 ---NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEG-GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQIL 515 (574)
T ss_pred ---ccCHHHHHHHHHHcCCHHHHcCccccCchhcCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 1234567888888888654 46778763 5569999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 152 KVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 152 ~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+.|+++. +++|+|+++|+++ ..+.+|++++|++|+++..|+.++
T Consensus 516 ~~l~~~~-~~~tviiitHr~~--~~~~~d~i~~l~~G~i~~~g~~~~ 559 (574)
T PRK11160 516 ELLAEHA-QNKTVLMITHRLT--GLEQFDRICVMDNGQIIEQGTHQE 559 (574)
T ss_pred HHHHHHc-CCCEEEEEecChh--HHHhCCEEEEEeCCeEEEeCCHHH
Confidence 9999986 4899999999996 346799999999999999998766
No 275
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=2.5e-34 Score=275.21 Aligned_cols=140 Identities=31% Similarity=0.565 Sum_probs=126.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+|||||||||||++|+|+.++. +|+|.++|+++.. ...++.++|++|++.+++. ||+||+
T Consensus 31 ~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~l----------- 96 (173)
T cd03246 31 LAIIGPSGSGKSTLARLILGLLRPT--SGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG-SIAENI----------- 96 (173)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCC--CCeEEECCEEcccCCHHHHHhheEEECCCCccccC-cHHHHC-----------
Confidence 4899999999999999999998854 5999999998753 2345678999999988874 999986
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEI 157 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (602)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 97 ----------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~ 142 (173)
T cd03246 97 ----------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAAL 142 (173)
T ss_pred ----------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999
Q ss_pred HhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCce
Q 007474 158 AKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQT 190 (602)
Q Consensus 158 ~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 190 (602)
+++|+|||+++|+++ .+ +.+|++++|++|++
T Consensus 143 ~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 143 KAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred HhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 878999999999986 45 68999999999974
No 276
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.2e-34 Score=334.98 Aligned_cols=180 Identities=28% Similarity=0.428 Sum_probs=152.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
+||+||||||||||+|+|+|+++|. +|+|.+||.++.. ..+|+.++||+|++.+|+. |++||+.++. | .
T Consensus 508 vaIvG~sGsGKSTLlklL~gl~~p~--~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~----~-~ 579 (710)
T TIGR03796 508 VALVGGSGSGKSTIAKLVAGLYQPW--SGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWD----P-T 579 (710)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEeHHHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCC----C-C
Confidence 5899999999999999999999864 5999999999853 4578889999999999975 9999997642 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRS-------AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
.+ ++++.++++..|+.+ -.||.+|+. ...||||||||++|||||+++|++|+||||||+||+.++.++
T Consensus 580 ~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~-G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i 654 (710)
T TIGR03796 580 IP----DADLVRACKDAAIHDVITSRPGGYDAELAEG-GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKII 654 (710)
T ss_pred CC----HHHHHHHHHHhCCHHHHHhCcCcccceeccC-CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHH
Confidence 22 334555666665543 357888764 467999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|++ .++|+|+++|+++ ....+|+|++|++|+++..|+.++
T Consensus 655 ~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~G~~~~ 697 (710)
T TIGR03796 655 DDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQRGTHEE 697 (710)
T ss_pred HHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEecCHHH
Confidence 999986 5899999999986 467799999999999999998776
No 277
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.6e-34 Score=278.61 Aligned_cols=166 Identities=22% Similarity=0.317 Sum_probs=141.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc--ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES--RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
++|+||||||||||+++|+|+.++ .+|+|.++|+++.. ...++.++|++|+..+++.+||+||+.+.....
T Consensus 30 ~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~----- 102 (200)
T PRK13540 30 LHLKGSNGAGKTTLLKLIAGLLNP--EKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS----- 102 (200)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC-----
Confidence 589999999999999999999875 45999999988743 234567899999988889999999998764211
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
. .+.+++++++.+++.+..++.++ .||||||||++||++++.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 103 -~--~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~ 174 (200)
T PRK13540 103 -P--GAVGITELCRLFSLEHLIDYPCG-----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHR 174 (200)
T ss_pred -c--chHHHHHHHHHcCCchhhhCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHH
Confidence 1 12478899999999877776665 499999999999999999999999999999999999999999999998
Q ss_pred hcCcEEEEEEcCCcHHHHHHhhHHh
Q 007474 159 KSGSVVIMSIHQPSYRIFSLLNRLI 183 (602)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ 183 (602)
++|.|||+++|++. ..+.+|...
T Consensus 175 ~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 175 AKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HcCCEEEEEeCCch--hccccchhh
Confidence 78999999999986 345577543
No 278
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.5e-34 Score=285.74 Aligned_cols=178 Identities=24% Similarity=0.381 Sum_probs=144.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+||||||||||+++|+|..++ .+|+|.++|.++.. ...++.++|++|++.+++ .||+||+.+.. .
T Consensus 33 ~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~ 103 (221)
T cd03244 33 VGIVGRTGSGKSSLLLALFRLVEL--SSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFG------E 103 (221)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCC--CCCEEEECCEEhHhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCC------C
Confidence 489999999999999999999875 45999999998743 234567999999988776 59999986421 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccc-------ccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRSAAKT-------FIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~-------~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
.. .+++.+.++.+++.+..++ .. +..++.||||||||++||++|+.+|++++|||||+|||+.++..+
T Consensus 104 ~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l 178 (221)
T cd03244 104 YS----DEELWQALERVGLKEFVESLPGGLDTVV-EEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI 178 (221)
T ss_pred CC----HHHHHHHHHHhCcHHHHHhccccccccc-ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence 11 2345666777776554332 11 124567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCC
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGT 195 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 195 (602)
.+.|+++++ +.|||+++|++. ++. .+|++++|++|+++..|+
T Consensus 179 ~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 179 QKTIREAFK-DCTVLTIAHRLD-TII-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHHHhcC-CCEEEEEeCCHH-HHh-hCCEEEEEECCeEEecCC
Confidence 999999864 689999999986 454 599999999999998875
No 279
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.8e-34 Score=319.84 Aligned_cols=179 Identities=25% Similarity=0.332 Sum_probs=152.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcC--C------CCCCHHHHHHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELL--F------PMLTVEETLMFS 69 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l--~------~~lTV~e~l~f~ 69 (602)
++|+||||||||||||+|+|++++ .+|+|.++|.++.. ...++.++|++|++.. + ..+||+|++.+.
T Consensus 32 ~~liG~nGsGKSTLl~~l~G~~~p--~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (490)
T PRK10938 32 WAFVGANGSGKSALARALAGELPL--LSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE 109 (490)
T ss_pred EEEECCCCCCHHHHHHHHhccCCC--CCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc
Confidence 589999999999999999999875 45999999976532 2234458999998542 1 147888877431
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 007474 70 AECRLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFK 149 (602)
Q Consensus 70 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 149 (602)
.+.+++++++++.+||.+..++.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..
T Consensus 110 -----------~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 173 (490)
T PRK10938 110 -----------VKDPARCEQLAQQFGITALLDRRFKY-----LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQ 173 (490)
T ss_pred -----------hhHHHHHHHHHHHcCCHhhhhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHH
Confidence 12356789999999999888877765 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 150 VVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 150 i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+.+.|++++++|+|||+++|++. .+.+.||++++|++|+++..|++++
T Consensus 174 l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 221 (490)
T PRK10938 174 LAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLADCTLAETGEREE 221 (490)
T ss_pred HHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999888999999999987 6889999999999999999987654
No 280
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.2e-34 Score=326.67 Aligned_cols=184 Identities=30% Similarity=0.485 Sum_probs=154.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
+||+||||||||||++.|.|++++ .+|+|.+||.+++. ..+|+.++||+|++.+|. -||+||+.++.. +
T Consensus 358 vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~ 429 (567)
T COG1132 358 VAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP-----D 429 (567)
T ss_pred EEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC-----C
Confidence 589999999999999999999886 46999999998864 467888999999999998 599999998642 1
Q ss_pred CCHHHHHHHH-----HHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 007474 78 VSKKRKRERV-----EALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK 152 (602)
Q Consensus 78 ~~~~~~~~~v-----~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (602)
.++++..+.. ++.++.+ .+-.||.+|+ ....||||||||++||||++++|++|+||||||+||+.+...+.+
T Consensus 430 at~eei~~a~k~a~~~d~I~~l--p~g~dt~vge-~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~ 506 (567)
T COG1132 430 ATDEEIEEALKLANAHEFIANL--PDGYDTIVGE-RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQD 506 (567)
T ss_pred CCHHHHHHHHHHhChHHHHHhC--cccccceecC-CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHH
Confidence 3333333222 2333333 4457999994 445699999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 153 VLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 153 ~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.++++. +++|+++++|.++ .+. .+|+|++|++|++++.|++++
T Consensus 507 ~l~~l~-~~rT~iiIaHRls-ti~-~aD~IiVl~~G~i~e~G~h~e 549 (567)
T COG1132 507 ALKKLL-KGRTTLIIAHRLS-TIK-NADRIIVLDNGRIVERGTHEE 549 (567)
T ss_pred HHHHHh-cCCEEEEEeccHh-HHH-hCCEEEEEECCEEEEecCHHH
Confidence 999887 5789999999996 354 499999999999999999887
No 281
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=5.2e-34 Score=299.81 Aligned_cols=187 Identities=28% Similarity=0.464 Sum_probs=169.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc----ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES----RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~ 76 (602)
+||+|.||||||||+++|.|.++|+ +|+|.++|+++.- ...+..+|+|.|+..|+|++||.||+..+..-....
T Consensus 33 HaLLGENGAGKSTLm~iL~G~~~P~--~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~ 110 (501)
T COG3845 33 HALLGENGAGKSTLMKILFGLYQPD--SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGG 110 (501)
T ss_pred EEEeccCCCCHHHHHHHHhCcccCC--cceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCcccccc
Confidence 4899999999999999999999865 5999999998753 235667899999999999999999999877543233
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
....++.+++++++.++.||+-..|.+|++ ||-||||||.|-++|..+|++|||||||+-|-|....++++.|++
T Consensus 111 ~~~~~~~~~~i~~l~~~yGl~vdp~~~V~d-----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~ 185 (501)
T COG3845 111 LIDRRQARARIKELSERYGLPVDPDAKVAD-----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRR 185 (501)
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCccceeec-----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 456778889999999999999888988887 999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCC
Q 007474 157 IAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGT 195 (602)
Q Consensus 157 l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 195 (602)
++++|+|||++||... |+.++|||+.+|.+|+++-..+
T Consensus 186 l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 186 LAAEGKTIIFITHKLK-EVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHCCCEEEEEeccHH-HHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999999997 8999999999999999887655
No 282
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-35 Score=308.38 Aligned_cols=182 Identities=36% Similarity=0.585 Sum_probs=157.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
+||+|+||||||||++.|.|-.++. +|+|.+||.++.. +..++.+++++|..++|.. |+++||.++..
T Consensus 367 vAIlG~SGsGKSTllqLl~~~~~~~--~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~------ 437 (573)
T COG4987 367 VAILGRSGSGKSTLLQLLAGAWDPQ--QGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLANP------ 437 (573)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCC--CCeeeECCcChhhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcCC------
Confidence 5899999999999999999998865 5999999998743 4467788999999999987 99999987532
Q ss_pred CCHHHHHHHHHHHHHHcCCCcc-------cccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRSA-------AKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
+..++.+.++++++||++. .||.+|+ ..+.||||||||++|||+|++|.++++|||||.|||+.+.+++
T Consensus 438 ---~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~v 513 (573)
T COG4987 438 ---DASDEELWAALQQVGLEKLLESAPDGLNTWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQV 513 (573)
T ss_pred ---CCCHHHHHHHHHHcCHHHHHHhChhhhhchhcc-CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHH
Confidence 1234667788888888764 3556765 5567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++.|.+-++ |+|+|++||+... .+.||||++|++|++++.|+.++
T Consensus 514 L~ll~~~~~-~kTll~vTHrL~~--le~~drIivl~~Gkiie~G~~~~ 558 (573)
T COG4987 514 LALLFEHAE-GKTLLMVTHRLRG--LERMDRIIVLDNGKIIEEGTHAE 558 (573)
T ss_pred HHHHHHHhc-CCeEEEEeccccc--HhhcCEEEEEECCeeeecCCHHh
Confidence 999998765 8999999999873 78899999999999999999877
No 283
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.9e-34 Score=333.09 Aligned_cols=182 Identities=29% Similarity=0.492 Sum_probs=153.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
+||+||||||||||+++|+|+++|. +|+|++||.++.. ..+|+.++||+|++.+|+. |++||+.+... + .
T Consensus 503 vaIvG~SGsGKSTLlklL~gl~~p~--~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~---~-~ 575 (708)
T TIGR01193 503 TTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK---E-N 575 (708)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCC--CcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC---C-C
Confidence 5899999999999999999999864 5999999998753 4577889999999999986 99999987521 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLR-------SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
.+ ++++.++++..++. +-.||.+|+. ...||||||||++|||||+++|++|+||||||+||+.+...+
T Consensus 576 ~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~-G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i 650 (708)
T TIGR01193 576 VS----QDEIWAACEIAEIKDDIENMPLGYQTELSEE-GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKI 650 (708)
T ss_pred CC----HHHHHHHHHHhCCHHHHHhcccccCcEecCC-CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHH
Confidence 22 23455555555543 3457888763 457999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|+++ +|+|+|+++|+++ ..+.+|++++|++|+++..|+.++
T Consensus 651 ~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~ 694 (708)
T TIGR01193 651 VNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDE 694 (708)
T ss_pred HHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHH
Confidence 9999985 5799999999986 568899999999999999998766
No 284
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-34 Score=316.64 Aligned_cols=184 Identities=25% Similarity=0.485 Sum_probs=157.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
+||+||||+||||+.+.|-.++.|. +|+|.+||+|+.+ ..+++.+|+|.|||.+|.. ||+||+.|+.. .
T Consensus 497 vALVGPSGsGKSTiasLL~rfY~Pt--sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-----~ 568 (716)
T KOG0058|consen 497 VALVGPSGSGKSTIASLLLRFYDPT--SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD-----N 568 (716)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCC--CCeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-----C
Confidence 5899999999999999999998864 5999999999854 4577889999999999987 99999999764 2
Q ss_pred CCHHHHH-----HHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 007474 78 VSKKRKR-----ERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK 152 (602)
Q Consensus 78 ~~~~~~~-----~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (602)
.+.++.. +.+++.+. ++++-.||.||+... +||||||||++|||||++||+||||||.||.||+++...+.+
T Consensus 569 ~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGEkG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~ 645 (716)
T KOG0058|consen 569 ATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGEKGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQE 645 (716)
T ss_pred CCHHHHHHHHHHhChHHHHH--hCccccccccCCccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHH
Confidence 3333332 22334444 456778999997544 699999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 153 VLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 153 ~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.|.++.+ ++|||++.|..+ ..+.+|+|+++++|++++.|+.++
T Consensus 646 aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~G~V~E~G~h~e 688 (716)
T KOG0058|consen 646 ALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDKGRVVEMGTHDE 688 (716)
T ss_pred HHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcCCeEEecccHHH
Confidence 9998876 599999999986 578899999999999999997766
No 285
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=7.2e-33 Score=315.69 Aligned_cols=186 Identities=28% Similarity=0.434 Sum_probs=162.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc---c----ccceEEEEccCCcCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR---L----LKIISAYVMQDELLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~---~----~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~ 73 (602)
++|+||||||||||+++|+|+.++. +|+|.+||+++... . .++.++|++|+..+++.+|+.||+.+.....
T Consensus 37 ~~l~G~nGsGKSTLl~~i~Gl~~~~--~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~ 114 (648)
T PRK10535 37 VAIVGASGSGKSTLMNILGCLDKPT--SGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA 114 (648)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc
Confidence 4899999999999999999998854 59999999987531 1 1456899999999999999999998865322
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 007474 74 LPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKV 153 (602)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (602)
.....+.++++.++++.+||.+..|+.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.
T Consensus 115 ---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~-----~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~l 186 (648)
T PRK10535 115 ---GLERKQRLLRAQELLQRLGLEDRVEYQPS-----QLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAI 186 (648)
T ss_pred ---CCCHHHHHHHHHHHHHHCCChhhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 23445667789999999999988877766 4999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 154 LGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 154 l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
|++++++|+|+|+++|+++ ..+.|||+++|++|++++.|++++
T Consensus 187 l~~l~~~g~tilivsH~~~--~~~~~d~i~~l~~G~i~~~g~~~~ 229 (648)
T PRK10535 187 LHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIRDGEIVRNPPAQE 229 (648)
T ss_pred HHHHHhcCCEEEEECCCHH--HHHhCCEEEEEECCEEEeecCccc
Confidence 9999878999999999986 346799999999999999998765
No 286
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=3e-34 Score=330.76 Aligned_cols=182 Identities=31% Similarity=0.526 Sum_probs=154.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
+||+||||||||||+|+|+|+++|. +|+|.+||.+++. ..+|+.++||+|++.+|+. |++||+.+.. | .
T Consensus 494 iaIvG~sGsGKSTLlklL~gl~~p~--~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~----~-~ 565 (694)
T TIGR03375 494 VAIIGRIGSGKSTLLKLLLGLYQPT--EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGA----P-Y 565 (694)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCC----C-C
Confidence 5899999999999999999999864 5999999998854 4567889999999999986 9999998642 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLR-------SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
.+ ++++.++++..++. +-.||.+|+. ...||||||||++|||||+++|++++||||||+||+.+...+
T Consensus 566 ~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~-G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i 640 (694)
T TIGR03375 566 AD----DEEILRAAELAGVTEFVRRHPDGLDMQIGER-GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERF 640 (694)
T ss_pred CC----HHHHHHHHHHcChHHHHHhCcccccceecCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Confidence 22 23455555555543 3457888764 456999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|+++.+ ++|+|+++|+++ ..+.||+|++|++|++++.|+.++
T Consensus 641 ~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~e 685 (694)
T TIGR03375 641 KDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQ 685 (694)
T ss_pred HHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHHH
Confidence 999999864 799999999986 468899999999999999998776
No 287
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8.5e-34 Score=279.27 Aligned_cols=168 Identities=25% Similarity=0.384 Sum_probs=137.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+||||||||||+++|+|+.++. +|+|.++|+++.. ...++.++|++|++.+++ .||+||+.+.. .
T Consensus 37 ~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~ 107 (207)
T cd03369 37 IGIVGRTGAGKSTLILALFRFLEAE--EGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------E 107 (207)
T ss_pred EEEECCCCCCHHHHHHHHhcccCCC--CCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccC------C
Confidence 5899999999999999999998754 5999999998742 234567999999998887 49999996521 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEI 157 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (602)
... +.+.+.++ + +. .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 108 ~~~----~~~~~~l~---~----~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 171 (207)
T cd03369 108 YSD----EEIYGALR---V----SE-----GGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREE 171 (207)
T ss_pred CCH----HHHHHHhh---c----cC-----CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 121 22333333 2 22 34569999999999999999999999999999999999999999999998
Q ss_pred HhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCc
Q 007474 158 AKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTP 196 (602)
Q Consensus 158 ~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 196 (602)
. +|+|+|+++|++. ++.. +|++++|++|+++..|++
T Consensus 172 ~-~~~tiii~th~~~-~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 172 F-TNSTILTIAHRLR-TIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred c-CCCEEEEEeCCHH-HHhh-CCEEEEEECCEEEecCCC
Confidence 5 5899999999987 4544 999999999999988753
No 288
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=4.2e-34 Score=323.74 Aligned_cols=182 Identities=31% Similarity=0.514 Sum_probs=153.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+|+||||||||+|+|+|+++|. +|+|.+||.++.. ..+++.++||+|++.+|+. |++||+.++. | .
T Consensus 364 v~IvG~sGsGKSTLl~lL~gl~~p~--~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~-~ 435 (588)
T PRK13657 364 VAIVGPTGAGKSTLINLLQRVFDPQ--SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGR----P-D 435 (588)
T ss_pred EEEECCCCCCHHHHHHHHhcCcCCC--CCEEEECCEEhhhCCHHHHHhheEEEecCcccccc-cHHHHHhcCC----C-C
Confidence 5899999999999999999999864 5999999998764 4567789999999999976 9999998742 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLR-------SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
.+ ++++.++++..++. +-.||.+|+. .+.||||||||++|||+|+++|++++||||||+||+.++..+
T Consensus 436 ~~----d~~i~~al~~~~l~~~i~~lp~gldt~i~~~-g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i 510 (588)
T PRK13657 436 AT----DEEMRAAAERAQAHDFIERKPDGYDTVVGER-GRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKV 510 (588)
T ss_pred CC----HHHHHHHHHHhCHHHHHHhCcccccchhcCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence 22 23455555655543 3357777763 456999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|+++. +++|+|++||+++ ..+.+|++++|++|+++..|+.++
T Consensus 511 ~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~ 555 (588)
T PRK13657 511 KAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDE 555 (588)
T ss_pred HHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999875 4799999999985 578899999999999999998665
No 289
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.1e-34 Score=320.86 Aligned_cols=185 Identities=31% Similarity=0.488 Sum_probs=150.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+||||||||||+++|+|.++|. +|+|.+||+++.. ..+++.++||+|++.+++. |++||+.+.. + .
T Consensus 347 ~~ivG~sGsGKSTL~~ll~g~~~~~--~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~-~ 418 (544)
T TIGR01842 347 LAIIGPSGSGKSTLARLIVGIWPPT--SGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFG----E-N 418 (544)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccC----C-C
Confidence 5899999999999999999998854 5999999998753 3467789999999999986 9999997532 1 1
Q ss_pred CCHHHHHH-----HHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 007474 78 VSKKRKRE-----RVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK 152 (602)
Q Consensus 78 ~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (602)
.++++..+ ..++.++.+ .+-.||.+|+ ..+.||||||||++|||||+++|++|+|||||+|||+.++..+.+
T Consensus 419 ~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~-~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~ 495 (544)
T TIGR01842 419 ADPEKIIEAAKLAGVHELILRL--PDGYDTVIGP-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALAN 495 (544)
T ss_pred CCHHHHHHHHHHhChHHHHHhC--ccccccccCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHH
Confidence 22222111 223344443 2234677765 356799999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 153 VLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 153 ~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.|+++..+|+|+|+++|+++ ..+.+|++++|++|++++.|+.++
T Consensus 496 ~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~ 539 (544)
T TIGR01842 496 AIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDE 539 (544)
T ss_pred HHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHH
Confidence 99999767899999999985 467899999999999999998765
No 290
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=5.4e-34 Score=274.10 Aligned_cols=146 Identities=32% Similarity=0.602 Sum_probs=128.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc--ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES--RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
++|+||||||||||+++|+|+.++. +|+|.++|+++.. ...++.++|++|++.+++ .|++||+
T Consensus 31 ~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i------------ 95 (178)
T cd03247 31 IALLGRSGSGKSTLLQLLTGDLKPQ--QGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRNNL------------ 95 (178)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCC--CCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHHhh------------
Confidence 4899999999999999999998754 5999999997643 234566899999988876 6999987
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
++.||||||||++||++|+.+|++++|||||+|||+.++..+++.|++++
T Consensus 96 ------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~ 145 (178)
T cd03247 96 ------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL 145 (178)
T ss_pred ------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 12499999999999999999999999999999999999999999999996
Q ss_pred hcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecC
Q 007474 159 KSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSG 194 (602)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 194 (602)
++.|||+++|++. ++ +.+|++++|++|++++.|
T Consensus 146 -~~~tii~~sh~~~-~~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 146 -KDKTLIWITHHLT-GI-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred -CCCEEEEEecCHH-HH-HhCCEEEEEECCEEEecC
Confidence 5899999999987 45 579999999999998754
No 291
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=3.5e-34 Score=330.27 Aligned_cols=180 Identities=27% Similarity=0.420 Sum_probs=150.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
+||+||||||||||+|+|+|+++|. +|+|.+||++++. ...++.++||+|++.+|+. |++|||.++.. .
T Consensus 510 vaIvG~SGsGKSTLl~lL~gl~~p~--~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~-----~ 581 (711)
T TIGR00958 510 VALVGPSGSGKSTVAALLQNLYQPT--GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLT-----D 581 (711)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCC--CCEEEECCEEHHhcCHHHHHhhceEEecCcccccc-CHHHHHhcCCC-----C
Confidence 5899999999999999999999864 5999999999854 4567789999999999875 99999987521 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRS-------AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
.+ ++++.++++..++.+ -.||.+|+. ...||||||||++|||+|+++|+|++||||||+||+.+...+
T Consensus 582 ~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~-G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i 656 (711)
T TIGR00958 582 TP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEK-GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLL 656 (711)
T ss_pred CC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHH
Confidence 22 345666677766543 357888763 457999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+ .. ..+++|+|+++|+++ ..+.+|+|++|++|+++..|+.++
T Consensus 657 ~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~e 699 (711)
T TIGR00958 657 QE-SR--SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQ 699 (711)
T ss_pred HH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHHH
Confidence 88 22 236899999999985 467899999999999999998776
No 292
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=6.2e-34 Score=321.42 Aligned_cols=183 Identities=29% Similarity=0.450 Sum_probs=155.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+|+||||||||+++|+|+.+|. +|+|.+||.+++. ..+++.++||+|++.+|+. |++|||.+.. +..
T Consensus 361 v~IvG~sGsGKSTLl~lL~gl~~~~--~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~~ 433 (571)
T TIGR02203 361 VALVGRSGSGKSTLVNLIPRFYEPD--SGQILLDGHDLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGR----TEQ 433 (571)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCC--CCeEEECCEeHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCC----CCC
Confidence 5899999999999999999999864 5999999998753 4567779999999998876 9999998642 111
Q ss_pred CCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRS-------AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
.+ +++++++++.+|+.+ -.||.+|+. .+.||||||||++|||+++++|++++|||||++||+.++..+
T Consensus 434 ~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i 508 (571)
T TIGR02203 434 AD----RAEIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLV 508 (571)
T ss_pred CC----HHHHHHHHHHcChHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence 22 345666777776643 357788764 457999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|++++ +++|+|++||+++ ..+.||+|++|++|+++..|+.++
T Consensus 509 ~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~~g~i~~~g~~~~ 553 (571)
T TIGR02203 509 QAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMDDGRIVERGTHNE 553 (571)
T ss_pred HHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEeCCEEEeeCCHHH
Confidence 99999885 4799999999985 678999999999999999998766
No 293
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=5.8e-34 Score=274.38 Aligned_cols=149 Identities=38% Similarity=0.600 Sum_probs=128.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+||||||||||+++|+|+.++ .+|+|.++|+++.. ...++.++|++|
T Consensus 28 ~~l~G~nGsGKStLl~~i~G~~~~--~~G~v~~~g~~~~~~~~~~~~~~i~~~~q------------------------- 80 (180)
T cd03214 28 VGILGPNGAGKSTLLKTLAGLLKP--SSGEILLDGKDLASLSPKELARKIAYVPQ------------------------- 80 (180)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCcCCHHHHHHHHhHHHH-------------------------
Confidence 489999999999999999999875 46999999998743 123345677777
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEI 157 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (602)
+++.+|+.+..++.+. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 81 ------------~l~~~gl~~~~~~~~~-----~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~ 143 (180)
T cd03214 81 ------------ALELLGLAHLADRPFN-----ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRL 143 (180)
T ss_pred ------------HHHHcCCHhHhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 6677777766555554 59999999999999999999999999999999999999999999999
Q ss_pred Hhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecC
Q 007474 158 AKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSG 194 (602)
Q Consensus 158 ~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 194 (602)
+++ |.|+|+++|+++ ++.+++|++++|++|++++.|
T Consensus 144 ~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 144 ARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 876 899999999987 578999999999999988654
No 294
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.9e-34 Score=261.76 Aligned_cols=176 Identities=28% Similarity=0.433 Sum_probs=154.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
.+|.||||||||||||+++.+.+|+ +|++++.|++++. ..+|+.++|+.|.+.+|+. ||++|+.|..+.|..+
T Consensus 32 iaitGPSG~GKStllk~va~Lisp~--~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~-tVeDNlifP~~~r~rr- 107 (223)
T COG4619 32 IAITGPSGCGKSTLLKIVASLISPT--SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TVEDNLIFPWQIRNRR- 107 (223)
T ss_pred EEEeCCCCccHHHHHHHHHhccCCC--CceEEEcCccccccChHHHHHHHHHHHcCcccccc-chhhccccchHHhccC-
Confidence 3799999999999999999998864 5999999999853 5688899999999999997 9999999987766322
Q ss_pred CCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRSA-AKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
...++..++|+++++.+. .++.+. .||||||||++|+|.|..-|+||+||||||.||+.+++.|-++|.+
T Consensus 108 ----~dr~aa~~llar~~l~~~~L~k~it-----~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~ 178 (223)
T COG4619 108 ----PDRAAALDLLARFALPDSILTKNIT-----ELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHR 178 (223)
T ss_pred ----CChHHHHHHHHHcCCchhhhcchhh-----hccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHH
Confidence 134577889999999864 444444 4999999999999999999999999999999999999999999999
Q ss_pred HH-hcCcEEEEEEcCCcHHHHHHhhHHhhhcCCce
Q 007474 157 IA-KSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQT 190 (602)
Q Consensus 157 l~-~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 190 (602)
+. .+...++-+||++. +..+.+||++-+..|++
T Consensus 179 ~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~G~~ 212 (223)
T COG4619 179 YVREQNVAVLWITHDKD-QAIRHADKVITLQPGHA 212 (223)
T ss_pred HhhhhceEEEEEecChH-HHhhhhheEEEeccCcc
Confidence 87 57889999999997 68899999999998875
No 295
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=7.5e-34 Score=288.97 Aligned_cols=181 Identities=22% Similarity=0.345 Sum_probs=142.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+|+||||||||+++|+|++++ .+|+|.++|+++.. ...++.++|++|++.+++. |++||+.... .
T Consensus 50 ~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~------~ 120 (257)
T cd03288 50 VGICGRTGSGKSSLSLAFFRMVDI--FDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSG-SIRFNLDPEC------K 120 (257)
T ss_pred EEEECCCCCCHHHHHHHHHcccCC--CCCeEEECCEEhhhCCHHHHhhhEEEECCCCccccc-HHHHhcCcCC------C
Confidence 489999999999999999999875 46999999998753 2346678999999988874 9999985321 0
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccc-------cccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRSAAK-------TFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
... +++.++++..++.+..+ +.++ ...+.||||||||++||++|+.+|++|+|||||+|||+.++..+
T Consensus 121 ~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l 195 (257)
T cd03288 121 CTD----DRLWEALEIAQLKNMVKSLPGGLDAVVT-EGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENIL 195 (257)
T ss_pred CCH----HHHHHHHHHhCcHHHHhhcccccCcEec-cCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence 111 12333333333332221 2222 23457999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|+++. ++.|||+++|+++ ++. .+|++++|++|+++..|++++
T Consensus 196 ~~~l~~~~-~~~tiii~sh~~~-~~~-~~dri~~l~~G~i~~~g~~~~ 240 (257)
T cd03288 196 QKVVMTAF-ADRTVVTIAHRVS-TIL-DADLVLVLSRGILVECDTPEN 240 (257)
T ss_pred HHHHHHhc-CCCEEEEEecChH-HHH-hCCEEEEEECCEEEEeCCHHH
Confidence 99999975 4899999999997 455 499999999999999998765
No 296
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3e-33 Score=277.61 Aligned_cols=173 Identities=26% Similarity=0.427 Sum_probs=136.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc-------cccceEEEEccCCcCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR-------LLKIISAYVMQDELLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~-------~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~ 73 (602)
++|+|||||||||||++|+|+.++. +|+|.++|+++... ..++.++|++|++.++ ..|++||+.+...
T Consensus 30 ~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~-- 104 (218)
T cd03290 30 TMIVGQVGCGKSSLLLAILGEMQTL--EGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-NATVEENITFGSP-- 104 (218)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCC--CCeEEECCcccccccccccchhhcceEEEEcCCCccc-cccHHHHHhhcCc--
Confidence 4899999999999999999998754 69999999876421 2345689999999877 5799999976421
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccc-------cccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 007474 74 LPRSVSKKRKRERVEALIDQLGLRSAAK-------TFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTS 146 (602)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~ 146 (602)
... ++..++++.+++.+..+ +..+ ..+..||||||||++||++|+.+|++|||||||+|||+.+
T Consensus 105 ----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 175 (218)
T cd03290 105 ----FNK----QRYKAVTDACSLQPDIDLLPFGDQTEIG-ERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHL 175 (218)
T ss_pred ----CCH----HHHHHHHHHhCcHHHHHhCcCccccCcc-cCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHH
Confidence 111 22345566666654322 1111 2345799999999999999999999999999999999999
Q ss_pred HHHHHH--HHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCc
Q 007474 147 AFKVVK--VLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQ 189 (602)
Q Consensus 147 ~~~i~~--~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 189 (602)
+..+++ .++.+.++|.|+|+++|+++ .+ ..+|++++|++|+
T Consensus 176 ~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 176 SDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEecCCC
Confidence 999998 67777667899999999987 45 5799999999874
No 297
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.6e-33 Score=272.33 Aligned_cols=164 Identities=26% Similarity=0.271 Sum_probs=138.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+||||||||||+++|+|+.++. +|+|.++|.++.... ++.++|++|+..+++.+||+||+.+.....
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~i~~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~------- 98 (195)
T PRK13541 29 TYIKGANGCGKSSLLRMIAGIMQPS--SGNIYYKNCNINNIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIY------- 98 (195)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCcccChhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhc-------
Confidence 4899999999999999999998754 699999999875322 345799999988888899999998754321
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKS 160 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~ 160 (602)
...++++++++.+++.+..++.++ .||||||||++||++++.+|++++|||||+|||+.++..+.+.|++..++
T Consensus 99 -~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~ 172 (195)
T PRK13541 99 -NSAETLYAAIHYFKLHDLLDEKCY-----SLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANS 172 (195)
T ss_pred -ccHHHHHHHHHHcCCHhhhccChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 123567889999999887776665 49999999999999999999999999999999999999999999987778
Q ss_pred CcEEEEEEcCCcHHHHHHhhHH
Q 007474 161 GSVVIMSIHQPSYRIFSLLNRL 182 (602)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v 182 (602)
|+|+|+++|+++. .+.+|-+
T Consensus 173 ~~tiii~sh~~~~--i~~~~~~ 192 (195)
T PRK13541 173 GGIVLLSSHLESS--IKSAQIL 192 (195)
T ss_pred CCEEEEEeCCccc--cchhhee
Confidence 9999999999862 3445543
No 298
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-33 Score=266.98 Aligned_cols=203 Identities=25% Similarity=0.358 Sum_probs=175.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc----ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES----RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~ 76 (602)
.+||||||||||||.++|+|.-....++|+|.++|+++.. +..+..+...+|.|.=+|..|+.+.|..+.+.+...
T Consensus 33 haiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~ 112 (251)
T COG0396 33 HAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGA 112 (251)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhcc
Confidence 3899999999999999999997655678999999999864 234555678899999999999999999877654322
Q ss_pred CCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRS-AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLG 155 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (602)
.-...+..+++++.++.+++.. .+++.++. |+|||||||..|+..++.+|++.+||||-||||..+-+.+-+.++
T Consensus 113 ~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~----GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~ 188 (251)
T COG0396 113 RGILPEFIKELKEKAELLGLDEEFLERYVNE----GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGIN 188 (251)
T ss_pred ccccHHHHHHHHHHHHHcCCCHHHhhcccCC----CcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHH
Confidence 1113466788999999999987 67777765 899999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEEEcCCcHHHHHHh--hHHhhhcCCceeecCCccchHHHHHHHcCCCC
Q 007474 156 EIAKSGSVVIMSIHQPSYRIFSLL--NRLIFLSHGQTVYSGTPATDFSLFFAEFGHPI 211 (602)
Q Consensus 156 ~l~~~g~tvi~~~H~~~~~i~~~~--D~v~~L~~G~iv~~G~~~~~~~~~f~~~g~~~ 211 (602)
.++++|.+++++||.. ++.++. |++.+|.+|+||..|.+ + +...++.-|+.|
T Consensus 189 ~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~-e-l~~~le~~gy~~ 242 (251)
T COG0396 189 ALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP-E-LAEELEEKGYDW 242 (251)
T ss_pred HHhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH-H-HHHHHHHhchHH
Confidence 9999999999999995 588887 99999999999999998 5 778888888754
No 299
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=4e-33 Score=275.67 Aligned_cols=180 Identities=20% Similarity=0.225 Sum_probs=145.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEE-ECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVT-LNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~-~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
++|+||||||||||+|+|+|+.++ .+|+|. ++|... .+.++..+++.+|++||+.+..... ...
T Consensus 16 ~~l~G~NGsGKSTLlk~i~Gl~~~--~sG~i~~~~~~~~----------~~~~~~~l~~~ltv~enl~~~~~~~---~~~ 80 (213)
T PRK15177 16 IGILAAPGSGKTTLTRLLCGLDAP--DEGDFIGLRGDAL----------PLGANSFILPGLTGEENARMMASLY---GLD 80 (213)
T ss_pred EEEECCCCCCHHHHHHHHhCCccC--CCCCEEEecCcee----------ccccccccCCcCcHHHHHHHHHHHc---CCC
Confidence 589999999999999999999875 459997 777532 1234567889999999999876543 122
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007474 80 KKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK 159 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~ 159 (602)
.++. .+.+.+.++|++..++.+++ ||||||||++||++|+.+|++++|||||++||+.++..+.+.|.+..+
T Consensus 81 ~~~~---~~~~~~~~~l~~~~~~~~~~-----lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~ 152 (213)
T PRK15177 81 GDEF---SHFCYQLTQLEQCYTDRVSE-----YSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ 152 (213)
T ss_pred HHHH---HHHHHHHhChhHHhhchHhh-----cCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh
Confidence 2222 23444567888777777764 999999999999999999999999999999999999999998865443
Q ss_pred cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccchHHHHHHH
Q 007474 160 SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPATDFSLFFAE 206 (602)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~~f~~ 206 (602)
++++|+++|++. ++.+++|++++|++|++++.|+..+ +.++++.
T Consensus 153 -~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~-~~~~~~~ 196 (213)
T PRK15177 153 -QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQ-ATALFEQ 196 (213)
T ss_pred -CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHH-HHHHHHH
Confidence 468999999997 5888999999999999999998876 6666543
No 300
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.1e-33 Score=326.07 Aligned_cols=182 Identities=30% Similarity=0.477 Sum_probs=152.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
+||+|+||||||||+|+|+|+++|. +|+|.+||++++. ..+++.++||+|++.+++. |++||+.+.. | .
T Consensus 486 vaivG~sGsGKSTL~~ll~g~~~p~--~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~----~-~ 557 (694)
T TIGR01846 486 IGIVGPSGSGKSTLTKLLQRLYTPQ--HGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCN----P-G 557 (694)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEehhhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCC----C-C
Confidence 5899999999999999999998864 5999999998754 4567789999999998875 9999997642 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRS-------AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
.+ ++++.++++..++.+ -.||.+|+. .+.||||||||++|||||+++|++|+|||||++||+.++..+
T Consensus 558 ~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~-g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i 632 (694)
T TIGR01846 558 AP----FEHVIHAAKLAGAHDFISELPQGYNTEVGEK-GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALI 632 (694)
T ss_pred CC----HHHHHHHHHHcChHHHHHhCcCccCcEecCC-CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHH
Confidence 22 234445555554432 357778764 567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|+++. +++|+|+++|+++ ..+.+|++++|++|++++.|+.++
T Consensus 633 ~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~~G~i~~~g~~~~ 677 (694)
T TIGR01846 633 MRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLEKGQIAESGRHEE 677 (694)
T ss_pred HHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999985 5899999999986 456799999999999999998766
No 301
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.2e-33 Score=318.50 Aligned_cols=182 Identities=23% Similarity=0.427 Sum_probs=152.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+||||||||||+++|+|+++|. +|+|.+||+++.. ..+++.++||+|++.+++. |++||+.+.. + .
T Consensus 344 ~~ivG~sGsGKSTLl~ll~g~~~p~--~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~-~ 415 (569)
T PRK10789 344 LGICGPTGSGKSTLLSLIQRHFDVS--EGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGR----P-D 415 (569)
T ss_pred EEEECCCCCCHHHHHHHHhcccCCC--CCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCC----C-C
Confidence 5899999999999999999999864 5999999998753 3467789999999999976 9999997642 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLR-------SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
.++ ++++++++..++. +-.||.+|+. ...||||||||++|||+|+++|++++|||||++||+.++..+
T Consensus 416 ~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~-g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i 490 (569)
T PRK10789 416 ATQ----QEIEHVARLASVHDDILRLPQGYDTEVGER-GVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQI 490 (569)
T ss_pred CCH----HHHHHHHHHcCCHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHH
Confidence 222 3445555555543 3457778764 456999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|+++. +|+|+|+++|+++ ..+.+|++++|++|+++..|+.++
T Consensus 491 ~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~ 535 (569)
T PRK10789 491 LHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQ 535 (569)
T ss_pred HHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEecCHHH
Confidence 99999985 5899999999985 457799999999999999998765
No 302
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-33 Score=309.82 Aligned_cols=190 Identities=25% Similarity=0.441 Sum_probs=154.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc----cccceEEEEccCC---cCCCCCCHHHHHHHHH-Hh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR----LLKIISAYVMQDE---LLFPMLTVEETLMFSA-EC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~----~~~~~~~yv~Q~~---~l~~~lTV~e~l~f~~-~~ 72 (602)
++|+||||||||||+++|+|+.+| .+|+|.++|+++... ..++.++|++|+. .+++.+|+.+|..+.. ..
T Consensus 277 ~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 354 (491)
T PRK10982 277 LGIAGLVGAKRTDIVETLFGIREK--SAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRN 354 (491)
T ss_pred EEEecCCCCCHHHHHHHHcCCCcC--CccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhh
Confidence 589999999999999999999875 469999999987532 1245589999985 4788899887743221 00
Q ss_pred cCC-CC-CCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 007474 73 RLP-RS-VSKKRKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFK 149 (602)
Q Consensus 73 ~~~-~~-~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 149 (602)
... .. .++.+.+++++++++.+++. +..++.+++ |||||||||+||++|+.+|+||||||||+|||+.++..
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~ 429 (491)
T PRK10982 355 YKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGS-----LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFE 429 (491)
T ss_pred hcccccccCcHHHHHHHHHHHHhcCccCCCccccccc-----CCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHH
Confidence 000 01 12334456789999999995 456766654 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 150 VVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 150 i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+++.|++++++|.|||++||+++ ++.++|||+++|++|+++..++..+
T Consensus 430 ~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~g~i~~~~~~~~ 477 (491)
T PRK10982 430 IYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSNGLVAGIVDTKT 477 (491)
T ss_pred HHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999888999999999987 6889999999999999997765543
No 303
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.7e-33 Score=318.21 Aligned_cols=182 Identities=32% Similarity=0.497 Sum_probs=152.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+||||||||||+|+|+|+++|. +|+|.+||.+++. ..+++.++|++|++.+++. |++||+.+.. | .
T Consensus 369 i~IvG~sGsGKSTLlklL~gl~~p~--~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~----~-~ 440 (576)
T TIGR02204 369 VALVGPSGAGKSTLFQLLLRFYDPQ--SGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYGR----P-D 440 (576)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCC--CCEEEECCEEHHhcCHHHHHHhceEEccCCccccc-cHHHHHhcCC----C-C
Confidence 4899999999999999999999864 5999999998753 3466779999999998876 9999997642 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRS-------AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
.+ ++++.++++..|+.+ -.|+.+|+. .+.||||||||++|||+++++|++++||||||+||+.+++.+
T Consensus 441 ~~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~-g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i 515 (576)
T TIGR02204 441 AT----DEEVEAAARAAHAHEFISALPEGYDTYLGER-GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLV 515 (576)
T ss_pred CC----HHHHHHHHHHcCcHHHHHhCCCCCCceeCCC-CCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHH
Confidence 22 345666666666543 246667653 456999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|+++. +++|+|+++|+++ ..+.+|++++|++|+++..|+.++
T Consensus 516 ~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~~ 560 (576)
T TIGR02204 516 QQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHAE 560 (576)
T ss_pred HHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHHH
Confidence 99999985 5899999999985 567899999999999999998665
No 304
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.9e-33 Score=273.69 Aligned_cols=190 Identities=30% Similarity=0.411 Sum_probs=163.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc--ccccceEEEEc-cCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES--RLLKIISAYVM-QDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~--~~~~~~~~yv~-Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++++|||||||||+||+|+|++.|. +|.|.+||...-. +.+-+.+++|+ |...+...+.+.|.+......+ .
T Consensus 53 vgflGaNGAGKSTtLKmLTGll~p~--~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy---~ 127 (325)
T COG4586 53 VGFLGANGAGKSTTLKMLTGLLLPT--SGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY---E 127 (325)
T ss_pred EEEEcCCCCcchhhHHHHhCccccC--CCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHH---h
Confidence 4789999999999999999999864 5999999986532 23344567765 4456777777888887655443 6
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEI 157 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (602)
++.++-+++.+.+.+.|+|+...+..+ |.||-|||.|+.||.+|+++|++|||||||-|||..++..+.+.|++.
T Consensus 128 Ipd~~F~~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~ 202 (325)
T COG4586 128 IPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEY 202 (325)
T ss_pred CCHHHHHHHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHH
Confidence 788889999999999999998777665 569999999999999999999999999999999999999999999999
Q ss_pred Hh-cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccchHHH
Q 007474 158 AK-SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPATDFSL 202 (602)
Q Consensus 158 ~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 202 (602)
.+ ++.||+.+||+.+ ++..+||||++|+.|+++|+|+.++ +..
T Consensus 203 n~~~~aTVllTTH~~~-di~~lc~rv~~I~~Gqlv~dg~l~~-l~~ 246 (325)
T COG4586 203 NEERQATVLLTTHIFD-DIATLCDRVLLIDQGQLVFDGTLAQ-LQE 246 (325)
T ss_pred HHhhCceEEEEecchh-hHHHhhhheEEeeCCcEeecccHHH-HHH
Confidence 86 5899999999998 6999999999999999999999877 544
No 305
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=7e-33 Score=272.11 Aligned_cols=163 Identities=30% Similarity=0.508 Sum_probs=128.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+||||||||||+++|+|+.++ .+|+|.++| .++|++|++.+++ .||+||+.+... ...
T Consensus 34 ~~i~G~nG~GKSTLl~~i~G~~~~--~~G~i~~~g----------~i~~~~q~~~l~~-~t~~enl~~~~~------~~~ 94 (204)
T cd03250 34 VAIVGPVGSGKSSLLSALLGELEK--LSGSVSVPG----------SIAYVSQEPWIQN-GTIRENILFGKP------FDE 94 (204)
T ss_pred EEEECCCCCCHHHHHHHHhCcCCC--CCCeEEEcC----------EEEEEecCchhcc-CcHHHHhccCCC------cCH
Confidence 489999999999999999999875 459999998 4899999998875 699999987422 111
Q ss_pred HHHHHHHHHHHHHcCCCccc-------ccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH-
Q 007474 81 KRKRERVEALIDQLGLRSAA-------KTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK- 152 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~- 152 (602)
++..+.++.+++.+.. ++... ...+.||||||||++||++|+.+|++++|||||+|||+.++..+.+
T Consensus 95 ----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ 169 (204)
T cd03250 95 ----ERYEKVIKACALEPDLEILPDGDLTEIG-EKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFEN 169 (204)
T ss_pred ----HHHHHHHHHcCcHHHHHhccCcccceec-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH
Confidence 1223333333332211 12222 2345799999999999999999999999999999999999999998
Q ss_pred HHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCc
Q 007474 153 VLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQ 189 (602)
Q Consensus 153 ~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 189 (602)
++++++++|+|||+++|++. .+.. +|++++|++|+
T Consensus 170 ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 170 CILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEeCCC
Confidence 56777667899999999986 4655 99999999885
No 306
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=9.8e-33 Score=281.97 Aligned_cols=189 Identities=30% Similarity=0.480 Sum_probs=166.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc------ccccceEEEEccCC--cCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES------RLLKIISAYVMQDE--LLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~------~~~~~~~~yv~Q~~--~l~~~lTV~e~l~f~~~~ 72 (602)
++|+|.||||||||-.+|.+++++ +|+|.++|++++. ...|+.+-.|+||+ .+.|.+||.|-+.-+...
T Consensus 316 lGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~v 392 (534)
T COG4172 316 LGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRV 392 (534)
T ss_pred EEEEecCCCCcchHHHHHHhhcCc---CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhh
Confidence 589999999999999999999873 4999999999864 23566788999997 589999999999887765
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK 152 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (602)
.-| ..++.++++++.++|+++||+... -++++.+.|||||||++||||++.+|++++||||||.||-.-+.++++
T Consensus 393 h~~-~ls~~eR~~rv~~aL~EVGLDp~~----r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~ 467 (534)
T COG4172 393 HEP-KLSAAERDQRVIEALEEVGLDPAT----RNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLD 467 (534)
T ss_pred cCC-CCCHHHHHHHHHHHHHHcCCChhH----hhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHH
Confidence 544 578899999999999999997532 134566799999999999999999999999999999999999999999
Q ss_pred HHHHHHh-cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 153 VLGEIAK-SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 153 ~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+|++|.+ .|.+-++++||.. -+-.+||+|+||++|++|+.|+.++
T Consensus 468 LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~GkiVE~G~~~~ 513 (534)
T COG4172 468 LLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRDGKIVEQGPTEA 513 (534)
T ss_pred HHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeCCEEeeeCCHHH
Confidence 9999986 5889999999997 5889999999999999999998766
No 307
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=3.6e-33 Score=292.93 Aligned_cols=188 Identities=30% Similarity=0.449 Sum_probs=160.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecc---cccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLE---SRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~---~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+||||||||||.|+|.|..+| .+|.|.+||-+++ ++.+-+.+||.||+-.+|+. ||.||+. ++. .+
T Consensus 365 lgIIGPSgSGKSTLaR~lvG~w~p--~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIa---Rf~--~~ 436 (580)
T COG4618 365 LGIIGPSGSGKSTLARLLVGIWPP--TSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIA---RFG--EE 436 (580)
T ss_pred EEEECCCCccHHHHHHHHHccccc--CCCcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHH---hcc--cc
Confidence 589999999999999999999885 4599999998875 35567789999999999998 9999995 222 12
Q ss_pred CCHH-----HHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 007474 78 VSKK-----RKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK 152 (602)
Q Consensus 78 ~~~~-----~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (602)
.+.+ .+...|++++- .+.+-.||.+|+ ...+||||||||+++||||-.+|.+++||||-|+||......+.+
T Consensus 437 ~d~~kIieAA~lAgvHelIl--~lP~GYdT~iG~-~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~ 513 (580)
T COG4618 437 ADPEKVIEAARLAGVHELIL--RLPQGYDTRIGE-GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAA 513 (580)
T ss_pred CCHHHHHHHHHHcChHHHHH--hCcCCccCccCC-CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHH
Confidence 2222 22334666664 456678999997 445799999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccchHHH
Q 007474 153 VLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPATDFSL 202 (602)
Q Consensus 153 ~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 202 (602)
.|.+++++|.|+|+++|.|+ +...+|+|++|++|++-.+|+.++ +..
T Consensus 514 Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r~e-VLa 560 (580)
T COG4618 514 AILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREE-VLA 560 (580)
T ss_pred HHHHHHHcCCEEEEEecCHH--HHhhcceeeeecCChHHhcCCHHH-HHH
Confidence 99999999999999999996 789999999999999999999887 443
No 308
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.3e-33 Score=264.53 Aligned_cols=138 Identities=38% Similarity=0.620 Sum_probs=122.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+||||||||||+++|+|+.++. +|+|.++|+++.. ...++.++|++|++.+++ .|+.||+
T Consensus 31 ~~l~G~nGsGKstLl~~i~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l----------- 96 (171)
T cd03228 31 VAIVGPSGSGKSTLLKLLLRLYDPT--SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENI----------- 96 (171)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCC--CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHh-----------
Confidence 4899999999999999999998854 5999999998743 234566899999988776 5998886
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEI 157 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (602)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 97 ----------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~ 142 (171)
T cd03228 97 ----------------------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRAL 142 (171)
T ss_pred ----------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999
Q ss_pred HhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCc
Q 007474 158 AKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQ 189 (602)
Q Consensus 158 ~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 189 (602)
.+ ++|||+++|++. ++.. ||++++|++|+
T Consensus 143 ~~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 143 AK-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred cC-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 64 799999999987 4655 99999999885
No 309
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=5.9e-33 Score=313.64 Aligned_cols=182 Identities=26% Similarity=0.430 Sum_probs=148.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+||||||||||+++|+|..+|. +|+|.+||.++.. ...++.++||+|++.+++ .|++||+.+.. + .
T Consensus 364 ~~ivG~sGsGKSTL~~ll~g~~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~-~ 435 (585)
T TIGR01192 364 VAIVGPTGAGKTTLINLLQRVYDPT--VGQILIDGIDINTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGR----E-G 435 (585)
T ss_pred EEEECCCCCCHHHHHHHHccCCCCC--CCEEEECCEEhhhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCC----C-C
Confidence 5899999999999999999998854 5999999998753 346778999999998887 59999998742 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCC-------CcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGL-------RSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
.++++ +.++++..++ .+-.||.+|+ ....||||||||++|||+|+++|++|+|||||+|||+.++..+
T Consensus 436 ~~~~~----~~~a~~~~~~~~~i~~l~~g~~t~~~~-~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i 510 (585)
T TIGR01192 436 ATDEE----VYEAAKAAAAHDFILKRSNGYDTLVGE-RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARV 510 (585)
T ss_pred CCHHH----HHHHHHHhCcHHHHHhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence 23322 3333333333 2334666765 3557999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|+++. +++|+|+++|+++ ..+.+|++++|++|+++..|+.++
T Consensus 511 ~~~l~~~~-~~~tvI~isH~~~--~~~~~d~i~~l~~G~i~~~g~~~~ 555 (585)
T TIGR01192 511 KNAIDALR-KNRTTFIIAHRLS--TVRNADLVLFLDQGRLIEKGSFQE 555 (585)
T ss_pred HHHHHHHh-CCCEEEEEEcChH--HHHcCCEEEEEECCEEEEECCHHH
Confidence 99999884 5899999999986 347799999999999999998665
No 310
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.6e-32 Score=278.24 Aligned_cols=177 Identities=28% Similarity=0.419 Sum_probs=147.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEE-----------ECCEecccc--c-cc--ceEEEEccCCcCCCCCCHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVT-----------LNGAVLESR--L-LK--IISAYVMQDELLFPMLTVEE 64 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~-----------~~g~~~~~~--~-~~--~~~~yv~Q~~~l~~~lTV~e 64 (602)
++|+||||||||||||+|+|++++. +|+|. ++|+++... . .+ ..++|++|+..+++. ++.+
T Consensus 29 ~~IvG~nGsGKSTLlk~l~Gl~~p~--~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~ 105 (255)
T cd03236 29 LGLVGPNGIGKSTALKILAGKLKPN--LGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPK-AVKG 105 (255)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCCC--CceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCch-HHHH
Confidence 5899999999999999999998864 59996 788876431 1 11 236899999888884 8888
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 007474 65 TLMFSAECRLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDS 144 (602)
Q Consensus 65 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~ 144 (602)
++.+.. ...+.++++.++++.+||.+..++.++ .||||||||++||++|+.+|++++|||||+|||+
T Consensus 106 ~i~~~l--------~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~laral~~~p~illlDEPts~LD~ 172 (255)
T cd03236 106 KVGELL--------KKKDERGKLDELVDQLELRHVLDRNID-----QLSGGELQRVAIAAALARDADFYFFDEPSSYLDI 172 (255)
T ss_pred HHHHHh--------chhHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCH
Confidence 887642 123345678999999999887776655 4999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCC
Q 007474 145 TSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGT 195 (602)
Q Consensus 145 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 195 (602)
.++..+.+.|++++++|+|||+++|++. .+.++||++++| +|++++.|-
T Consensus 173 ~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l-~~~~~~~~~ 221 (255)
T cd03236 173 KQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCL-YGEPGAYGV 221 (255)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEE-CCCCCccee
Confidence 9999999999999888999999999986 577899999999 466766553
No 311
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.4e-33 Score=339.24 Aligned_cols=185 Identities=26% Similarity=0.442 Sum_probs=155.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC----------------------------------------------------Cce
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE----------------------------------------------------SLK 28 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~----------------------------------------------------~~~ 28 (602)
+||+||||||||||+++|.|+++|. +.+
T Consensus 1197 vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1276 (1466)
T PTZ00265 1197 TAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNS 1276 (1466)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCC
Confidence 5899999999999999999999862 147
Q ss_pred eEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-------CCc
Q 007474 29 GTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSKKRKRERVEALIDQLG-------LRS 98 (602)
Q Consensus 29 G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~ 98 (602)
|+|++||.++.. ..+|+.++||+|++.+|+ .|++|||.++. | ..++ +.++++++..+ |.+
T Consensus 1277 G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~----~-~at~----eeI~~A~k~A~l~~fI~~LP~ 1346 (1466)
T PTZ00265 1277 GKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGK----E-DATR----EDVKRACKFAAIDEFIESLPN 1346 (1466)
T ss_pred CeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCC----C-CCCH----HHHHHHHHHcCCHHHHHhCcc
Confidence 999999999854 457888999999999996 59999999862 1 2233 33555555544 345
Q ss_pred ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCcEEEEEEcCCcHHHHH
Q 007474 99 AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA-KSGSVVIMSIHQPSYRIFS 177 (602)
Q Consensus 99 ~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~i~~ 177 (602)
-.||.||+. ...||||||||++|||||+++|+||+||||||+||+.+.+.|.+.|+++. .+++|+|+++|+++ ..+
T Consensus 1347 GydT~VGe~-G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~ 1423 (1466)
T PTZ00265 1347 KYDTNVGPY-GKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIK 1423 (1466)
T ss_pred ccCCccCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHH
Confidence 569999964 45699999999999999999999999999999999999999999999986 36899999999985 467
Q ss_pred HhhHHhhhcC----Ccee-ecCCccc
Q 007474 178 LLNRLIFLSH----GQTV-YSGTPAT 198 (602)
Q Consensus 178 ~~D~v~~L~~----G~iv-~~G~~~~ 198 (602)
.||+|++|++ |+++ +.|+.++
T Consensus 1424 ~aD~Ivvl~~~~~~G~iv~e~Gth~e 1449 (1466)
T PTZ00265 1424 RSDKIVVFNNPDRTGSFVQAHGTHEE 1449 (1466)
T ss_pred hCCEEEEEeCCCCCCCEEEEecCHHH
Confidence 8999999999 9955 7998776
No 312
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.98 E-value=7.9e-33 Score=268.56 Aligned_cols=186 Identities=30% Similarity=0.422 Sum_probs=159.0
Q ss_pred EEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc----ccccceEEEEccC--CcCCCCCCHHHHHHHH--HHhc
Q 007474 2 AILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES----RLLKIISAYVMQD--ELLFPMLTVEETLMFS--AECR 73 (602)
Q Consensus 2 ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~----~~~~~~~~yv~Q~--~~l~~~lTV~e~l~f~--~~~~ 73 (602)
+|+|||||||||||++++|..+|. +|.+.+.|++..+ ...|+.+|+|.-. ..+.+..+|+|.+.-+ +..-
T Consensus 61 ~I~G~NGsGKTTLL~ll~~~~~ps--sg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG 138 (257)
T COG1119 61 AIVGPNGAGKTTLLSLLTGEHPPS--SGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIG 138 (257)
T ss_pred EEECCCCCCHHHHHHHHhcccCCC--CCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeeccccccc
Confidence 799999999999999999998864 6999999998743 3567889999764 4566778888877422 2222
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 007474 74 LPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKV 153 (602)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (602)
.......++..+++..+++.+|+.+.+|+..++ ||-||||||-|||||+++|++||||||++|||...+..+.+.
T Consensus 139 ~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~-----LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~ 213 (257)
T COG1119 139 IYQEDLTAEDLAAAQWLLELLGAKHLADRPFGS-----LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNR 213 (257)
T ss_pred ccccCCCHHHHHHHHHHHHHcchhhhccCchhh-----cCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHH
Confidence 222133466778999999999999999998886 999999999999999999999999999999999999999999
Q ss_pred HHHHHhc--CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCC
Q 007474 154 LGEIAKS--GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGT 195 (602)
Q Consensus 154 l~~l~~~--g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 195 (602)
|.+++.. +.++|++||+++ |+-..+++++++++|+++++|.
T Consensus 214 l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 214 LEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHhcCCCCceEEEEEcchh-hcccccceEEEeeCCceeeccc
Confidence 9999875 788999999987 7999999999999999999874
No 313
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.98 E-value=1.6e-32 Score=304.26 Aligned_cols=186 Identities=25% Similarity=0.332 Sum_probs=147.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc----ccccceEEEEccCCcCCC--CCCHHHHHHHHHHh--
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES----RLLKIISAYVMQDELLFP--MLTVEETLMFSAEC-- 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~----~~~~~~~~yv~Q~~~l~~--~lTV~e~l~f~~~~-- 72 (602)
++|+||||||||||+++|+|..++ ..+|+|.++|+++.. ...++.++|++|++.+++ ..|+++++.+....
T Consensus 289 ~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~ 367 (490)
T PRK10938 289 WQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSI 367 (490)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhcccccc
Confidence 489999999999999999998643 246999999987532 123456899999876543 35777776543211
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 007474 73 RLPRSVSKKRKRERVEALIDQLGLRS-AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVV 151 (602)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (602)
....... .+.+++++++++.+||.+ ..++.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.
T Consensus 368 ~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 441 (490)
T PRK10938 368 GIYQAVS-DRQQKLAQQWLDILGIDKRTADAPFHS-----LSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVR 441 (490)
T ss_pred ccccCCC-HHHHHHHHHHHHHcCCchhhccCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHH
Confidence 1111112 234567899999999987 77777664 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCc-EEEEEEcCCcHHHHH-HhhHHhhhcCCceeecC
Q 007474 152 KVLGEIAKSGS-VVIMSIHQPSYRIFS-LLNRLIFLSHGQTVYSG 194 (602)
Q Consensus 152 ~~l~~l~~~g~-tvi~~~H~~~~~i~~-~~D~v~~L~~G~iv~~G 194 (602)
+.|++++++|. |||+++|+++ ++.+ ++|++++|++|+++..-
T Consensus 442 ~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 442 RFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecCCceEEee
Confidence 99999988764 6999999987 5766 58999999999988754
No 314
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.98 E-value=2.6e-32 Score=258.67 Aligned_cols=130 Identities=32% Similarity=0.501 Sum_probs=117.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc----cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR----LLKIISAYVMQDELLFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~----~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~ 76 (602)
++|+|||||||||||++|+|+.++. +|+|.++|+++... ..++.++|++|
T Consensus 29 ~~l~G~nGsGKSTLl~~i~G~~~~~--~G~v~~~g~~~~~~~~~~~~~~~i~~~~q------------------------ 82 (163)
T cd03216 29 HALLGENGAGKSTLMKILSGLYKPD--SGEILVDGKEVSFASPRDARRAGIAMVYQ------------------------ 82 (163)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCEECCcCCHHHHHhcCeEEEEe------------------------
Confidence 4899999999999999999998854 59999999987531 23456788888
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 83 -----------------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~ 127 (163)
T cd03216 83 -----------------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRR 127 (163)
T ss_pred -----------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceee
Q 007474 157 IAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVY 192 (602)
Q Consensus 157 l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 192 (602)
++++|.|||+++|++. ++.+.+|++++|++|++++
T Consensus 128 ~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 128 LRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 9878999999999986 5888999999999999875
No 315
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.98 E-value=2e-32 Score=314.76 Aligned_cols=184 Identities=30% Similarity=0.464 Sum_probs=157.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
+||+|||||||||...+|-..+.| .+|+|.+||.++++ +..|+++|.|.|+|.||.. |++||+.|+.. .
T Consensus 1019 vALVG~SGsGKSTvI~LLeRfYdp--~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~~-----~ 1090 (1228)
T KOG0055|consen 1019 VALVGPSGSGKSTVISLLERFYDP--DAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGSE-----E 1090 (1228)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCC--CCCeEEECCcccccCCHHHHHHhcceeccCchhhcc-cHHHHHhccCC-----C
Confidence 589999999999999999999875 45999999999865 4578889999999999986 99999999821 1
Q ss_pred CCHHHHHHH-----HHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 007474 78 VSKKRKRER-----VEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK 152 (602)
Q Consensus 78 ~~~~~~~~~-----v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (602)
.+..|..+. +.+.+ .+|.+-.||.+|+... +||||||||++||||+++||+||||||.||.||+++.+.+.+
T Consensus 1091 vs~~eIi~Aak~ANaH~FI--~sLP~GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQe 1167 (1228)
T KOG0055|consen 1091 VSEEEIIEAAKLANAHNFI--SSLPQGYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQE 1167 (1228)
T ss_pred CCHHHHHHHHHHhhhHHHH--hcCcCcccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHH
Confidence 343333222 22222 3677889999997554 599999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 153 VLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 153 ~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.|.+.. +|+|.|++.|.++ ..+.+|.|.|+++|++++.|+.++
T Consensus 1168 ALd~a~-~gRT~IvIAHRLS--TIqnaD~I~Vi~~G~VvE~GtH~~ 1210 (1228)
T KOG0055|consen 1168 ALDRAM-EGRTTIVIAHRLS--TIQNADVIAVLKNGKVVEQGTHDE 1210 (1228)
T ss_pred HHHHhh-cCCcEEEEecchh--hhhcCCEEEEEECCEEEecccHHH
Confidence 999875 5899999999987 578899999999999999999877
No 316
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.98 E-value=5.8e-32 Score=277.83 Aligned_cols=171 Identities=23% Similarity=0.436 Sum_probs=135.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+||||||||||+++|+|++++. +|+|.++|. ++|++|++.+++. ||+||+.+.... ..
T Consensus 66 ~~liG~NGsGKSTLl~~I~Gl~~p~--~G~I~i~g~----------i~yv~q~~~l~~~-tv~enl~~~~~~------~~ 126 (282)
T cd03291 66 LAITGSTGSGKTSLLMLILGELEPS--EGKIKHSGR----------ISFSSQFSWIMPG-TIKENIIFGVSY------DE 126 (282)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCE----------EEEEeCccccccc-CHHHHhhccccc------CH
Confidence 4899999999999999999998754 599999982 7999999988875 999999864211 11
Q ss_pred HHHHHHHHHHHHHcCCCccc-------ccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 007474 81 KRKRERVEALIDQLGLRSAA-------KTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKV 153 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (602)
.++.+.++.+++.+.. ++.++ ...+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.
T Consensus 127 ----~~~~~~l~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ 201 (282)
T cd03291 127 ----YRYKSVVKACQLEEDITKFPEKDNTVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFES 201 (282)
T ss_pred ----HHHHHHHHHhCCHHHHHhccccccceec-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHH
Confidence 1223334444443322 22232 23457999999999999999999999999999999999999999986
Q ss_pred H-HHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 154 L-GEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 154 l-~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+ ++++ ++.|||+++|++. .+ ..+|++++|++|+++..|++.+
T Consensus 202 ll~~~~-~~~tIiiisH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~ 244 (282)
T cd03291 202 CVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSE 244 (282)
T ss_pred HHHHhh-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence 5 5554 5799999999987 34 6899999999999999998765
No 317
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.98 E-value=2.4e-32 Score=305.70 Aligned_cols=157 Identities=34% Similarity=0.539 Sum_probs=132.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc--ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES--RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
+||+||||||||||+|+|+|+++|. +|+|.+||.++++ ..+++.++||+|++.+|+. |++||+.++. | ..
T Consensus 364 vaIvG~SGsGKSTLl~lL~g~~~p~--~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~----~-~~ 435 (529)
T TIGR02868 364 VAILGPSGSGKSTLLMLLTGLLDPL--QGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGR----P-DA 435 (529)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEEhhhHHHHHHhheEEEccCcccccc-cHHHHHhccC----C-CC
Confidence 5899999999999999999999864 5999999998763 4567789999999999987 9999998752 1 12
Q ss_pred CHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRS-------AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVV 151 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (602)
.++++.++++..++.+ -.||.+|+.. ..||||||||++|||||+++|++|+||||||+||+.++..+.
T Consensus 436 ----~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G-~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~ 510 (529)
T TIGR02868 436 ----TDEELWAALERVGLADWLRSLPDGLDTVLGEGG-ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELL 510 (529)
T ss_pred ----CHHHHHHHHHHcCCHHHHHhCcccccchhcccc-CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 2345666777766543 4588898743 469999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEEcCC
Q 007474 152 KVLGEIAKSGSVVIMSIHQP 171 (602)
Q Consensus 152 ~~l~~l~~~g~tvi~~~H~~ 171 (602)
+.|+++. +++|+|+++|++
T Consensus 511 ~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 511 EDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHHHhc-CCCEEEEEecCC
Confidence 9999864 579999999985
No 318
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=5.3e-32 Score=302.75 Aligned_cols=179 Identities=27% Similarity=0.416 Sum_probs=147.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHH-h-------
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAE-C------- 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~-~------- 72 (602)
++|+||||||||||||+|+|++++. +|+|.++|. ..++|++|++.+++.+||+|++.+... .
T Consensus 30 ~~liG~NGsGKSTLl~~l~Gl~~p~--~G~i~~~~~--------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 99 (530)
T PRK15064 30 YGLIGANGCGKSTFMKILGGDLEPS--AGNVSLDPN--------ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQER 99 (530)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CceEEecCC--------CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHH
Confidence 5899999999999999999998754 599999873 348999999989999999999987431 0
Q ss_pred ----cCCCC-----------------CCHHHHHHHHHHHHHHcCCCccc-ccccCCCCCCCCChHHHHHHHHHHHHhhCC
Q 007474 73 ----RLPRS-----------------VSKKRKRERVEALIDQLGLRSAA-KTFIGDEQHRGVSGGERRRVSIGIDIIHDP 130 (602)
Q Consensus 73 ----~~~~~-----------------~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSgGerqRv~ia~~L~~~p 130 (602)
..+.. ....+.+++++++++.+||.+.. +..++ .|||||||||+||++|+.+|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~LSgGq~qrv~lA~aL~~~p 174 (530)
T PRK15064 100 DRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMS-----EVAPGWKLRVLLAQALFSNP 174 (530)
T ss_pred HHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchh-----hcCHHHHHHHHHHHHHhcCC
Confidence 00000 00012346788999999997643 34444 59999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCce-eecCCccc
Q 007474 131 ILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQT-VYSGTPAT 198 (602)
Q Consensus 131 ~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i-v~~G~~~~ 198 (602)
++|||||||+|||+.++..+.+.|++ .|.|||+++|++. .+.++||++++|++|++ ++.|++++
T Consensus 175 ~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~ 239 (530)
T PRK15064 175 DILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRH-FLNSVCTHMADLDYGELRVYPGNYDE 239 (530)
T ss_pred CEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHH-HHHhhcceEEEEeCCEEEEecCCHHH
Confidence 99999999999999999999999863 5899999999987 58899999999999999 47887665
No 319
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.97 E-value=2.5e-32 Score=305.56 Aligned_cols=169 Identities=31% Similarity=0.546 Sum_probs=141.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+||||||||||+|+|+|+.+|. +|+|.+||+++.. ..+++.++||+|++.+|+. |++||+.++.. .
T Consensus 351 ~~ivG~sGsGKSTL~~ll~g~~~~~--~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~ 422 (529)
T TIGR02857 351 VALVGPSGAGKSTLLNLLLGFVDPT--EGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-TIAENIRLARP-----D 422 (529)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEehhhCCHHHHHhheEEEcCCCcccCc-CHHHHHhccCC-----C
Confidence 5899999999999999999999864 5999999998753 4567789999999999975 99999987521 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRS-------AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
.+ ++++.++++..++.+ -.||.+|+ ....||||||||++|||+|+++|++++|||||++||+.++..+
T Consensus 423 ~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i 497 (529)
T TIGR02857 423 AS----DAEIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALV 497 (529)
T ss_pred CC----HHHHHHHHHHcCcHHHHHhCcccccchhcc-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH
Confidence 22 245666666666643 35778876 3456999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhh
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFL 185 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 185 (602)
.+.|+++. +++|+|+++|+++ ..+.+|++++|
T Consensus 498 ~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 498 TEALRALA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred HHHHHHhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 99999985 5899999999985 45789998765
No 320
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=7.4e-32 Score=302.87 Aligned_cols=171 Identities=27% Similarity=0.343 Sum_probs=147.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+||||||||||+++|+|+++|. +|+|.++ ..++|++|+..+.+.+||+|++.+.... ..
T Consensus 368 v~l~G~NGsGKSTLlk~L~Gl~~p~--~G~I~~~----------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~- 429 (590)
T PRK13409 368 IGIVGPNGIGKTTFAKLLAGVLKPD--EGEVDPE----------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LG- 429 (590)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--ceEEEEe----------eeEEEecccccCCCCCcHHHHHHHHhhh-----cC-
Confidence 5899999999999999999998754 5999986 1379999998888999999999875321 11
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKS 160 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~ 160 (602)
....++++++.+||.+..++.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 430 --~~~~~~~~L~~l~l~~~~~~~~~~-----LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~ 502 (590)
T PRK13409 430 --SSYYKSEIIKPLQLERLLDKNVKD-----LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEE 502 (590)
T ss_pred --hHHHHHHHHHHCCCHHHHhCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence 123578999999999888877765 9999999999999999999999999999999999999999999999874
Q ss_pred -CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 161 -GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 161 -g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
|+|||+++||+. .+..++||+++|+ |++...|...+
T Consensus 503 ~g~tviivsHD~~-~~~~~aDrvivl~-~~~~~~g~~~~ 539 (590)
T PRK13409 503 REATALVVDHDIY-MIDYISDRLMVFE-GEPGKHGHASG 539 (590)
T ss_pred CCCEEEEEeCCHH-HHHHhCCEEEEEc-CcceeeeecCC
Confidence 899999999987 6889999999996 47777776443
No 321
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.97 E-value=5e-32 Score=317.14 Aligned_cols=192 Identities=28% Similarity=0.471 Sum_probs=176.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc----ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES----RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~ 76 (602)
.+++|+|||||||++|+|.|..+++ +|++.++|.++.. .+.++.+||+||+|.+++.+|.+|+|.+.++++
T Consensus 594 fgLLG~NGAGKtT~f~mltG~~~~t--~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr--- 668 (885)
T KOG0059|consen 594 FGLLGVNGAGKTTTFKMLTGETKPT--SGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR--- 668 (885)
T ss_pred EEEecCCCCCchhhHHHHhCCccCC--cceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---
Confidence 3789999999999999999998854 5999999998854 235677999999999999999999999999987
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
++++.+.++.++++++.+||.+.+|+.++. +|||+|||+++|.||+.+|++++|||||+|+||.+++.+.+++++
T Consensus 669 G~~~~di~~~v~~ll~~~~L~~~~~~~~~~-----ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~ 743 (885)
T KOG0059|consen 669 GLPRSDIGSAIEKLLRLVGLGPYANKQVRT-----YSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIAR 743 (885)
T ss_pred CCChhHHHHHHHHHHHHcCChhhhccchhh-----CCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 567777888899999999999999998876 999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccchHHHHH
Q 007474 157 IAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPATDFSLFF 204 (602)
Q Consensus 157 l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~~f 204 (602)
+.++|+.||.|||..+ |...+|||+.+|.+|++...|++.+ ++..|
T Consensus 744 ~~k~g~aiiLTSHsMe-E~EaLCtR~aImv~G~l~ciGs~q~-LKsrf 789 (885)
T KOG0059|consen 744 LRKNGKAIILTSHSME-EAEALCTRTAIMVIGQLRCIGSPQE-LKSRY 789 (885)
T ss_pred HHhcCCEEEEEcCCHH-HHHHHhhhhheeecCeeEEecChHH-HHhhc
Confidence 9998889999999987 7999999999999999999999987 77655
No 322
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.97 E-value=9.1e-32 Score=255.70 Aligned_cols=135 Identities=33% Similarity=0.489 Sum_probs=118.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+||||||||||+++|+|++++. +|+|.++|. +.++|++|++.++ ..||+||+.+.
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~~~--------~~i~~~~q~~~~~-~~tv~~nl~~~----------- 87 (166)
T cd03223 30 LLITGPSGTGKSSLFRALAGLWPWG--SGRIGMPEG--------EDLLFLPQRPYLP-LGTLREQLIYP----------- 87 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCC--------ceEEEECCCCccc-cccHHHHhhcc-----------
Confidence 4899999999999999999998754 599999873 4589999998765 57999998642
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKS 160 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~ 160 (602)
..+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 88 ---------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--- 137 (166)
T cd03223 88 ---------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--- 137 (166)
T ss_pred ---------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---
Confidence 12359999999999999999999999999999999999999999999986
Q ss_pred CcEEEEEEcCCcHHHHHHhhHHhhhcCCc
Q 007474 161 GSVVIMSIHQPSYRIFSLLNRLIFLSHGQ 189 (602)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 189 (602)
++|+|+++|++. ....+|++++|++|.
T Consensus 138 ~~tiiivsh~~~--~~~~~d~i~~l~~~~ 164 (166)
T cd03223 138 GITVISVGHRPS--LWKFHDRVLDLDGEG 164 (166)
T ss_pred CCEEEEEeCChh--HHhhCCEEEEEcCCC
Confidence 689999999985 457999999998753
No 323
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=9e-32 Score=302.26 Aligned_cols=178 Identities=26% Similarity=0.385 Sum_probs=146.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHH-hc-----C
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAE-CR-----L 74 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~-~~-----~ 74 (602)
++|+|||||||||||++|+|+++| .+|+|.+++. ..+|||+|++.+++.+||.||+.+... .+ .
T Consensus 36 ~~iiG~NGsGKSTLlk~i~G~~~p--~~G~i~~~~~--------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 105 (556)
T PRK11819 36 IGVLGLNGAGKSTLLRIMAGVDKE--FEGEARPAPG--------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRF 105 (556)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC--------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHH
Confidence 589999999999999999999875 4599999752 358999999999999999999987532 00 0
Q ss_pred C-----CCCCH----------------------HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHh
Q 007474 75 P-----RSVSK----------------------KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDII 127 (602)
Q Consensus 75 ~-----~~~~~----------------------~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~ 127 (602)
. ..... .+.+++++++++.+||.. .++.++ .|||||||||+||++|+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~-----~LSgGqkqrv~la~al~ 179 (556)
T PRK11819 106 NEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDAKVT-----KLSGGERRRVALCRLLL 179 (556)
T ss_pred HHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccCchh-----hcCHHHHHHHHHHHHHh
Confidence 0 00000 012457889999999964 566665 49999999999999999
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCcee-ecCCccc
Q 007474 128 HDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTV-YSGTPAT 198 (602)
Q Consensus 128 ~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~ 198 (602)
.+|++|||||||+|||+.++..+.+.|+++. .|||+++|+++ .+.+.+|++++|++|+++ +.|+.++
T Consensus 180 ~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~ 247 (556)
T PRK11819 180 EKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRY-FLDNVAGWILELDRGRGIPWEGNYSS 247 (556)
T ss_pred CCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHH-HHHhhcCeEEEEeCCEEEEecCCHHH
Confidence 9999999999999999999999999999873 59999999987 688999999999999986 7786554
No 324
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.97 E-value=7.1e-32 Score=302.85 Aligned_cols=174 Identities=21% Similarity=0.317 Sum_probs=145.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
+||+||||||||||+++|+|.++|. +|+|.+||+++.. ..+++.++||+|++.+++. |++|| . +
T Consensus 352 ~aivG~sGsGKSTL~~ll~g~~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~-----~-- 418 (547)
T PRK10522 352 LFLIGGNGSGKSTLAMLLTGLYQPQ--SGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G-----K-- 418 (547)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-hhccc---c-----C--
Confidence 5899999999999999999998864 5999999999864 3467789999999988875 77776 0 0
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCCC--CCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRSAAKTFIGDE--QHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLG 155 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~--~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (602)
...++.+++.++.+++.+..+. ++. ....||||||||++|||+|+++|++|+|||||++||+.++..+.+.|.
T Consensus 419 ---~~~~~~~~~~~~~~~l~~~~~~--~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~ 493 (547)
T PRK10522 419 ---PANPALVEKWLERLKMAHKLEL--EDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLL 493 (547)
T ss_pred ---chHHHHHHHHHHHcCCchhhhc--cccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 1234567889999998764432 221 134799999999999999999999999999999999999999999998
Q ss_pred HHHh-cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecC
Q 007474 156 EIAK-SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSG 194 (602)
Q Consensus 156 ~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 194 (602)
+..+ +|+|+|+++|+++ ..+.+|++++|++|+++...
T Consensus 494 ~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 494 PLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSELT 531 (547)
T ss_pred HHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEEec
Confidence 7654 5899999999984 57889999999999998764
No 325
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=8.8e-32 Score=300.99 Aligned_cols=171 Identities=27% Similarity=0.384 Sum_probs=145.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCc--CCCCCCHHHHHHHHHHhcCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDEL--LFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~--l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
++|+|||||||||||++|+|+.+|. +|+|.++|. +.+||++|+.. +++.+||.|++.+.. ..
T Consensus 348 ~~l~G~NGsGKSTLl~~i~G~~~p~--~G~i~~~~~--------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~--- 411 (530)
T PRK15064 348 LAIIGENGVGKTTLLRTLVGELEPD--SGTVKWSEN--------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE--- 411 (530)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCc--------eEEEEEcccccccCCCCCcHHHHHHHhc---cC---
Confidence 4899999999999999999998754 599999873 35899999863 567799999986421 01
Q ss_pred CHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEI 157 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (602)
.+.+++++++++.+|+. +..++.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++
T Consensus 412 --~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 484 (530)
T PRK15064 412 --GDDEQAVRGTLGRLLFSQDDIKKSVKV-----LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY 484 (530)
T ss_pred --CccHHHHHHHHHHcCCChhHhcCcccc-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC
Confidence 12245788999999994 566776664 9999999999999999999999999999999999999999999886
Q ss_pred HhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCcee-ecCCccc
Q 007474 158 AKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTV-YSGTPAT 198 (602)
Q Consensus 158 ~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~ 198 (602)
+.|||++||++. .+.++||++++|++|+++ +.|++.+
T Consensus 485 ---~~tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~ 522 (530)
T PRK15064 485 ---EGTLIFVSHDRE-FVSSLATRIIEITPDGVVDFSGTYEE 522 (530)
T ss_pred ---CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCCCHHH
Confidence 459999999987 688899999999999998 7786554
No 326
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=7.7e-32 Score=255.47 Aligned_cols=186 Identities=31% Similarity=0.487 Sum_probs=154.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccccc---ccceEEEEccCC--cCCCCCCHHHHHHHHHHhcCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRL---LKIISAYVMQDE--LLFPMLTVEETLMFSAECRLP 75 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~---~~~~~~yv~Q~~--~l~~~lTV~e~l~f~~~~~~~ 75 (602)
+.|+|.||||||||+|+|+|.+.++ +|+|.++|.++++.. ....++-|+|++ ..+|.||++||+..+..-...
T Consensus 35 vtViGsNGAGKSTlln~iaG~l~~t--~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~ 112 (263)
T COG1101 35 VTVIGSNGAGKSTLLNAIAGDLKPT--SGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKK 112 (263)
T ss_pred EEEEcCCCccHHHHHHHhhCccccC--CceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcc
Confidence 3689999999999999999999864 599999999997643 223457799997 579999999999987543222
Q ss_pred CCCCH---HHHHHHHHHHHHHc--CCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 76 RSVSK---KRKRERVEALIDQL--GLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 76 ~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
+..+. ...++...+-++.+ ||++..++++|- |||||||-++++.|-++.|+||+|||-|++|||.++..+
T Consensus 113 rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~igl-----LSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~v 187 (263)
T COG1101 113 RGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFV 187 (263)
T ss_pred cccchhhhHHHHHHHHHHHhhcccchhhhhcChhhh-----ccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHH
Confidence 23333 23334445555554 678888898886 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecC
Q 007474 151 VKVLGEIAK-SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSG 194 (602)
Q Consensus 151 ~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 194 (602)
++.-.++.+ .+.|.+++||+++ +...+-+|+++|++|+||.+-
T Consensus 188 m~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 188 MELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred HHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeCCeEEEEc
Confidence 999999876 4789999999998 589999999999999999864
No 327
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=1.7e-31 Score=299.82 Aligned_cols=178 Identities=27% Similarity=0.368 Sum_probs=144.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHh-cC-----
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAEC-RL----- 74 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~-~~----- 74 (602)
++|+|||||||||||++|+|+.+| .+|+|.+++. ..+|||+|++.+++.+||+||+.+.... +.
T Consensus 34 ~~liG~NGsGKSTLl~~i~G~~~p--~~G~i~~~~~--------~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~ 103 (552)
T TIGR03719 34 IGVLGLNGAGKSTLLRIMAGVDKE--FNGEARPAPG--------IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRF 103 (552)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC--------CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHH
Confidence 589999999999999999999875 4599999751 3589999999999999999999875321 00
Q ss_pred C-----CCCCHHH----------------------HHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHh
Q 007474 75 P-----RSVSKKR----------------------KRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDII 127 (602)
Q Consensus 75 ~-----~~~~~~~----------------------~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~ 127 (602)
. ...+..+ ..++++++++.+|+.. .++.++ .|||||||||+||++|+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~-----~LSgGqkqrv~la~al~ 177 (552)
T TIGR03719 104 NEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDADVT-----KLSGGERRRVALCRLLL 177 (552)
T ss_pred HHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccCchh-----hcCHHHHHHHHHHHHHh
Confidence 0 0000010 1246677888888854 455554 59999999999999999
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCcee-ecCCccc
Q 007474 128 HDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTV-YSGTPAT 198 (602)
Q Consensus 128 ~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~ 198 (602)
.+|++|||||||++||+.++..+.+.|+++ +.|||+++|++. .+..+||++++|++|+++ +.|+.++
T Consensus 178 ~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~-~~~~~~d~v~~l~~g~i~~~~g~~~~ 245 (552)
T TIGR03719 178 SKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRY-FLDNVAGWILELDRGRGIPWEGNYSS 245 (552)
T ss_pred cCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcCeEEEEECCEEEEecCCHHH
Confidence 999999999999999999999999999876 359999999987 588899999999999976 7787654
No 328
>PLN03232 ABC transporter C family member; Provisional
Probab=99.97 E-value=1.2e-31 Score=329.22 Aligned_cols=181 Identities=19% Similarity=0.321 Sum_probs=153.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
+||+|+||||||||+++|.|++++. +|+|.+||.++.. ..+|+.++||||++.+|+. |++|||.+.. .
T Consensus 1265 vaIVG~SGSGKSTL~~lL~rl~~p~--~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~ 1335 (1495)
T PLN03232 1265 VGVVGRTGAGKSSMLNALFRIVELE--KGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------E 1335 (1495)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCC--CceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------C
Confidence 5899999999999999999998864 5999999999864 4578889999999999987 9999997531 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRS-------AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
.+ ++++.++++..++.+ -.||.+|+ ....||||||||++|||||+++|+||+||||||+||+.+...|
T Consensus 1336 ~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~I 1410 (1495)
T PLN03232 1336 HN----DADLWEALERAHIKDVIDRNPFGLDAEVSE-GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLI 1410 (1495)
T ss_pred CC----HHHHHHHHHHcCCHHHHHhCcCCCCceecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 22 345566666665543 45778875 3446999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|++.. +++|+|+++|+++ ....+|||++|++|++++.|++++
T Consensus 1411 q~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~G~ivE~Gt~~e 1455 (1495)
T PLN03232 1411 QRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSSGQVLEYDSPQE 1455 (1495)
T ss_pred HHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEECCEEEEECCHHH
Confidence 99999874 5899999999986 345699999999999999999887
No 329
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.97 E-value=1.5e-31 Score=300.58 Aligned_cols=176 Identities=21% Similarity=0.311 Sum_probs=145.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+||||||||||+++|+|.++|. +|+|.+||.++.. ..+++.++||+|++.+|+. |++||..
T Consensus 371 ~aivG~sGsGKSTl~~ll~g~~~p~--~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n~~---------- 437 (555)
T TIGR01194 371 VFIVGENGCGKSTLAKLFCGLYIPQ--EGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDD-LIGPDEG---------- 437 (555)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEECCCCCHHHHHhhCcEEccChhhhhh-hhhcccc----------
Confidence 5899999999999999999998864 5999999999864 3456779999999988876 7888731
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccC-CCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH-
Q 007474 78 VSKKRKRERVEALIDQLGLRSAAKTFIG-DEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLG- 155 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg-~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~- 155 (602)
++..+++++++++.+++.+..+...+ -.....||||||||++|||+|+.+|++++|||||++||+.++..+.+.+.
T Consensus 438 --~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~ 515 (555)
T TIGR01194 438 --EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLP 515 (555)
T ss_pred --cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 12345568889999998875543322 12235699999999999999999999999999999999999999998664
Q ss_pred HHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeec
Q 007474 156 EIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYS 193 (602)
Q Consensus 156 ~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 193 (602)
.+..+|+|+|+++|+++ ..+.+|++++|++|+++..
T Consensus 516 ~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 516 DLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 56567999999999985 5689999999999998753
No 330
>PLN03130 ABC transporter C family member; Provisional
Probab=99.97 E-value=1.4e-31 Score=329.01 Aligned_cols=181 Identities=22% Similarity=0.332 Sum_probs=153.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
+||+|+||||||||+++|.|++++. +|+|.+||.++.. ...|+.+++||||+.+|+. |++|||.+.. .
T Consensus 1268 VaIVGrSGSGKSTLl~lL~rl~~p~--~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~ 1338 (1622)
T PLN03130 1268 VGIVGRTGAGKSSMLNALFRIVELE--RGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------E 1338 (1622)
T ss_pred EEEECCCCCCHHHHHHHHhCcCCCC--CceEEECCEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------C
Confidence 5899999999999999999998864 5999999999864 4577889999999999987 9999997531 1
Q ss_pred CCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLR-------SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
.+ ++++.++++..++. +-.||.+|+ ....||||||||++|||||+++|+||+||||||+||+.+...|
T Consensus 1339 ~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge-~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~I 1413 (1622)
T PLN03130 1339 HN----DADLWESLERAHLKDVIRRNSLGLDAEVSE-AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALI 1413 (1622)
T ss_pred CC----HHHHHHHHHHcCcHHHHHhCccccCccccC-CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH
Confidence 22 33455666655543 346788876 3446999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|++.. +++|||+++|+++ ....||||++|++|++++.|++++
T Consensus 1414 q~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd~G~IvE~Gt~~e 1458 (1622)
T PLN03130 1414 QKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLDAGRVVEFDTPEN 1458 (1622)
T ss_pred HHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999875 4899999999987 345699999999999999999887
No 331
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=6.2e-32 Score=252.30 Aligned_cols=188 Identities=24% Similarity=0.441 Sum_probs=162.8
Q ss_pred EEECCCCCcHHHHHHHHHcCCCCCCceeEEEECC-Eecccc----cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCC
Q 007474 2 AILGASGAGKSTLIDALAGRIEKESLKGTVTLNG-AVLESR----LLKIISAYVMQDELLFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 2 ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g-~~~~~~----~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~ 76 (602)
+|+|||||||||+|++|+|..+|. +|+|+++| .+++.. -.+..+|-=+|.+..|+.+||+|||+.+.+...+-
T Consensus 35 ~lIGpNGAGKTT~mD~ItGKtrp~--~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v 112 (249)
T COG4674 35 VLIGPNGAGKTTLMDVITGKTRPQ--EGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSV 112 (249)
T ss_pred EEECCCCCCceeeeeeecccCCCC--cceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcch
Confidence 689999999999999999998754 59999999 676532 23455788899999999999999999876532110
Q ss_pred -----CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 007474 77 -----SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVV 151 (602)
Q Consensus 77 -----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (602)
.-...+.+++++++|+..||.+.+|...+. ||-||||++.|++-++.+|++|+||||++|+--....+.-
T Consensus 113 ~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~-----LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~ta 187 (249)
T COG4674 113 FASLFARLRAEERRRIDELLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA 187 (249)
T ss_pred HHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhh-----hccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHH
Confidence 012345567999999999999999888776 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 152 KVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 152 ~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++|+.++. +++|+++-||+. -+-+++|+|.+|++|.+...|+.++
T Consensus 188 eLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh~G~VL~EGsld~ 232 (249)
T COG4674 188 ELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLHEGSVLAEGSLDE 232 (249)
T ss_pred HHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEeccceeecccHHH
Confidence 99999986 589999999997 5999999999999999999998776
No 332
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.97 E-value=2.5e-31 Score=323.88 Aligned_cols=182 Identities=27% Similarity=0.437 Sum_probs=146.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEEC-CEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcC--
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLN-GAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRL-- 74 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~-g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~-- 74 (602)
+||+||||||||||+++|+|+++|. +|+|.++ |.++.. ..+|+.+|||+|++.+|+. ||+||+.++.....
T Consensus 414 vaIvG~SGsGKSTLl~lL~gl~~p~--~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~ 490 (1466)
T PTZ00265 414 YAFVGESGCGKSTILKLIERLYDPT--EGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDL 490 (1466)
T ss_pred EEEECCCCCCHHHHHHHHHHhccCC--CCeEEEeCCcchhhCCHHHHHHhccEecccccchhc-cHHHHHHhcCCCcccc
Confidence 5899999999999999999999864 5999994 677643 3456779999999999985 99999998631000
Q ss_pred --------CC-----C------------------------C---------CHHHHHHHHHHHHHHcCCCc-------ccc
Q 007474 75 --------PR-----S------------------------V---------SKKRKRERVEALIDQLGLRS-------AAK 101 (602)
Q Consensus 75 --------~~-----~------------------------~---------~~~~~~~~v~~~l~~lgL~~-------~~~ 101 (602)
+. . . .....++++.++++.+++.+ -.|
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~d 570 (1466)
T PTZ00265 491 EALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYE 570 (1466)
T ss_pred chhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccC
Confidence 00 0 0 00112356777888777654 347
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCcEEEEEEcCCcHHHHHHhh
Q 007474 102 TFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK-SGSVVIMSIHQPSYRIFSLLN 180 (602)
Q Consensus 102 ~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D 180 (602)
|.+|+. ...||||||||++|||||+++|+||+|||||++||+.++..+.+.|+++++ +|+|+|+++|+++ .+ +.||
T Consensus 571 T~vg~~-g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls-~i-~~aD 647 (1466)
T PTZ00265 571 TLVGSN-ASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS-TI-RYAN 647 (1466)
T ss_pred ceeCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH-HH-HhCC
Confidence 777753 567999999999999999999999999999999999999999999999976 5899999999986 34 7899
Q ss_pred HHhhhcCC
Q 007474 181 RLIFLSHG 188 (602)
Q Consensus 181 ~v~~L~~G 188 (602)
+|++|++|
T Consensus 648 ~Iivl~~g 655 (1466)
T PTZ00265 648 TIFVLSNR 655 (1466)
T ss_pred EEEEEeCC
Confidence 99999986
No 333
>PTZ00243 ABC transporter; Provisional
Probab=99.97 E-value=4e-31 Score=324.46 Aligned_cols=181 Identities=23% Similarity=0.348 Sum_probs=155.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
+||+|+||||||||+++|.|++++. +|+|.+||.++.. ..+|+.++||||++.+|+. |++|||.... .
T Consensus 1339 VaIVGrTGSGKSTLl~lLlrl~~p~--~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~ 1409 (1560)
T PTZ00243 1339 VGIVGRTGSGKSTLLLTFMRMVEVC--GGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFL------E 1409 (1560)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEEcccCCHHHHHhcceEECCCCccccc-cHHHHhCccc------C
Confidence 5899999999999999999999864 5999999999864 4578889999999999987 9999995311 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCChHHHHHHHHHHHHhhC-CcEEEEeCCCCCCCHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRS-------AAKTFIGDEQHRGVSGGERRRVSIGIDIIHD-PILLFLDEPTSGLDSTSAFK 149 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~-p~lllLDEPtsgLD~~~~~~ 149 (602)
.+ ++++.++++..|+.+ -.||.+|+ ....||||||||++|||||+++ |+||+||||||+||+.+...
T Consensus 1410 ~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~ 1484 (1560)
T PTZ00243 1410 AS----SAEVWAALELVGLRERVASESEGIDSRVLE-GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQ 1484 (1560)
T ss_pred CC----HHHHHHHHHHCCChHHHhhCcccccccccC-CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHH
Confidence 22 356777777777654 35788876 3456999999999999999996 89999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 150 VVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 150 i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+.+.|++.. +++|||+++|+++ ....||+|++|++|++++.|++++
T Consensus 1485 Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~G~VvE~Gt~~e 1530 (1560)
T PTZ00243 1485 IQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMDHGAVAEMGSPRE 1530 (1560)
T ss_pred HHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEECCEEEEECCHHH
Confidence 999999864 4799999999985 567899999999999999999887
No 334
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=1e-30 Score=293.59 Aligned_cols=172 Identities=25% Similarity=0.395 Sum_probs=141.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCC-cCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDE-LLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~-~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
++|+|||||||||||++|+|+.+|. +|+|.+++. ..++|++|+. .+++.+||.|++.+..... ...
T Consensus 351 ~~l~G~NGsGKSTLl~~l~G~~~p~--~G~i~~~~~--------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~ 417 (552)
T TIGR03719 351 VGVIGPNGAGKSTLFRMITGQEQPD--SGTIKIGET--------VKLAYVDQSRDALDPNKTVWEEISGGLDII---QLG 417 (552)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCC--CeEEEECCc--------eEEEEEeCCccccCCCCcHHHHHHhhcccc---ccC
Confidence 5899999999999999999998754 599999542 1489999986 5888999999998764321 111
Q ss_pred HHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 80 KKRKRERVEALIDQLGLRS-AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
.. +.++.++++.+|+.+ ..++.+++ |||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.
T Consensus 418 ~~--~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 490 (552)
T TIGR03719 418 KR--EVPSRAYVGRFNFKGSDQQKKVGQ-----LSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA 490 (552)
T ss_pred cc--hHHHHHHHHhCCCChhHhcCchhh-----CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC
Confidence 11 234567899999964 45666654 99999999999999999999999999999999999999999999873
Q ss_pred hcCcEEEEEEcCCcHHHHHHhhHHhhhcC-Ccee-ecCCc
Q 007474 159 KSGSVVIMSIHQPSYRIFSLLNRLIFLSH-GQTV-YSGTP 196 (602)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv-~~G~~ 196 (602)
.|||++||++. .+.++||++++|++ |+++ +.|+.
T Consensus 491 ---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 491 ---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGNY 526 (552)
T ss_pred ---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCCH
Confidence 38999999986 68889999999986 5776 44543
No 335
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.97 E-value=4.9e-31 Score=324.22 Aligned_cols=181 Identities=22% Similarity=0.299 Sum_probs=153.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
+||+|+||||||||+++|.|++++. +|+|.+||.++.. ...|+.+++||||+.+|+. |++|||.... .
T Consensus 1315 iaIVGrTGsGKSTL~~lL~rl~~~~--~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~ 1385 (1522)
T TIGR00957 1315 VGIVGRTGAGKSSLTLGLFRINESA--EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------Q 1385 (1522)
T ss_pred EEEECCCCCCHHHHHHHHhcCccCC--CCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------C
Confidence 5899999999999999999998854 5999999999864 4578889999999999987 9999996211 1
Q ss_pred CCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLR-------SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
.+ ++.+.++++..++. +-.||.+|+ ....||||||||++|||||+++|+||+||||||+||+.+...+
T Consensus 1386 ~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~I 1460 (1522)
T TIGR00957 1386 YS----DEEVWWALELAHLKTFVSALPDKLDHECAE-GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLI 1460 (1522)
T ss_pred CC----HHHHHHHHHHcCcHHHHhhCccCCCceecC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 22 23456666666654 345788876 3456999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|++.. +++|||+++|+++ ....+|||++|++|++++.|++++
T Consensus 1461 q~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~G~IvE~G~~~e 1505 (1522)
T TIGR00957 1461 QSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDKGEVAEFGAPSN 1505 (1522)
T ss_pred HHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEECCHHH
Confidence 99999864 5799999999986 456799999999999999999887
No 336
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=1.2e-30 Score=249.69 Aligned_cols=130 Identities=24% Similarity=0.437 Sum_probs=114.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+||||||||||+|+|+|++++. +|+|.++|++ ++|++|+..
T Consensus 28 ~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~---------i~~~~q~~~------------------------- 71 (177)
T cd03222 28 IGIVGPNGTGKTTAVKILAGQLIPN--GDNDEWDGIT---------PVYKPQYID------------------------- 71 (177)
T ss_pred EEEECCCCChHHHHHHHHHcCCCCC--CcEEEECCEE---------EEEEcccCC-------------------------
Confidence 5899999999999999999998854 5999999863 578887432
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKS 160 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~ 160 (602)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.+++++++
T Consensus 72 -------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~ 120 (177)
T cd03222 72 -------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEE 120 (177)
T ss_pred -------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999877
Q ss_pred C-cEEEEEEcCCcHHHHHHhhHHhhhcCCceeec--CCccc
Q 007474 161 G-SVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYS--GTPAT 198 (602)
Q Consensus 161 g-~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~--G~~~~ 198 (602)
+ .|||+++|++. ++.+++|++++|+++-.++. |++..
T Consensus 121 ~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~ 160 (177)
T cd03222 121 GKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYGIASQPKG 160 (177)
T ss_pred CCCEEEEEECCHH-HHHHhCCEEEEEcCCCccceeccCCcc
Confidence 5 89999999986 57889999999998766654 65543
No 337
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=1.1e-30 Score=293.54 Aligned_cols=172 Identities=26% Similarity=0.397 Sum_probs=141.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCC-cCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDE-LLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~-~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
++|+||||||||||+++|+|+.+|. +|+|.+++. ..+||++|+. .+++.+||.||+.+..... ...
T Consensus 353 ~~l~G~NGsGKSTLl~~i~G~~~p~--~G~i~~~~~--------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~ 419 (556)
T PRK11819 353 VGIIGPNGAGKSTLFKMITGQEQPD--SGTIKIGET--------VKLAYVDQSRDALDPNKTVWEEISGGLDII---KVG 419 (556)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCc--------eEEEEEeCchhhcCCCCCHHHHHHhhcccc---ccc
Confidence 5899999999999999999998754 599999542 1489999996 7889999999998764321 111
Q ss_pred HHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 80 KKRKRERVEALIDQLGLRS-AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
. .+.++.++++.+|+.+ ..++.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.
T Consensus 420 ~--~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 492 (556)
T PRK11819 420 N--REIPSRAYVGRFNFKGGDQQKKVGV-----LSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP 492 (556)
T ss_pred c--cHHHHHHHHHhCCCChhHhcCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC
Confidence 1 1234567899999964 45666664 99999999999999999999999999999999999999999999873
Q ss_pred hcCcEEEEEEcCCcHHHHHHhhHHhhhcC-Ccee-ecCCc
Q 007474 159 KSGSVVIMSIHQPSYRIFSLLNRLIFLSH-GQTV-YSGTP 196 (602)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv-~~G~~ 196 (602)
| |||++||++. .+.++||++++|++ |++. +.|+.
T Consensus 493 --~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~ 528 (556)
T PRK11819 493 --G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGNF 528 (556)
T ss_pred --C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCCH
Confidence 4 8999999987 68899999999986 7776 45543
No 338
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=8.7e-31 Score=259.57 Aligned_cols=153 Identities=27% Similarity=0.459 Sum_probs=136.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+|+||||||||-|+|.|+.+| ++|+|.++|+++.... +
T Consensus 42 ~glVGESG~GKSTlgr~i~~L~~p--t~G~i~f~g~~i~~~~-------------------------------------~ 82 (268)
T COG4608 42 LGLVGESGCGKSTLGRLILGLEEP--TSGEILFEGKDITKLS-------------------------------------K 82 (268)
T ss_pred EEEEecCCCCHHHHHHHHHcCcCC--CCceEEEcCcchhhcc-------------------------------------h
Confidence 489999999999999999999985 4599999999864322 3
Q ss_pred HHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007474 81 KRKRERVEALIDQLGLRS-AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK 159 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~ 159 (602)
.+..+++.++|+.+|+.. .++ .+++++|||||||+.|||||+.+|+++++|||||.||...+.+++++|+++.+
T Consensus 83 ~~~~~~v~elL~~Vgl~~~~~~-----ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~ 157 (268)
T COG4608 83 EERRERVLELLEKVGLPEEFLY-----RYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE 157 (268)
T ss_pred hHHHHHHHHHHHHhCCCHHHhh-----cCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH
Confidence 456788999999999865 344 34567999999999999999999999999999999999999999999999987
Q ss_pred c-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 160 S-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+ |.|.++++||.+ .+..++||+.+|..|++|..|+.++
T Consensus 158 ~~~lt~lFIsHDL~-vv~~isdri~VMy~G~iVE~g~~~~ 196 (268)
T COG4608 158 ELGLTYLFISHDLS-VVRYISDRIAVMYLGKIVEIGPTEE 196 (268)
T ss_pred HhCCeEEEEEEEHH-hhhhhcccEEEEecCceeEecCHHH
Confidence 4 999999999997 5889999999999999999998776
No 339
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=3.9e-30 Score=263.02 Aligned_cols=193 Identities=28% Similarity=0.480 Sum_probs=166.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEeccc---cccc----ceEEEEccCC--cCCCCCCHHHHHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE---SLKGTVTLNGAVLES---RLLK----IISAYVMQDE--LLFPMLTVEETLMF 68 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~---~~~G~i~~~g~~~~~---~~~~----~~~~yv~Q~~--~l~~~lTV~e~l~f 68 (602)
+||+|.||||||-..+.+.|+++.. .-+|+|.++|+++-. ...+ ..++.++|++ .+.|-.|+.+.+.-
T Consensus 39 lAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E 118 (534)
T COG4172 39 LALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAE 118 (534)
T ss_pred EEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHH
Confidence 5899999999999999999999742 246999999998732 2222 3589999997 57888899888876
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 007474 69 SAECRLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAF 148 (602)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (602)
..++. +.+++++.++++-++|+.+|+.+-.... +.++.+|||||||||.||.||+++|++||.||||+.||..-+.
T Consensus 119 ~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQa 194 (534)
T COG4172 119 VLRLH--RGLSRAAARARALELLELVGIPEPEKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQA 194 (534)
T ss_pred HHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHH
Confidence 65543 4678889999999999999998765443 4577889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 149 KVVKVLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 149 ~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+|+++|++|.++ |..++++|||.. -+-+++|||++|.+|++|+.|..++
T Consensus 195 QIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~VM~~G~ivE~~~t~~ 244 (534)
T COG4172 195 QILDLLKELQAELGMAILFITHDLG-IVRKFADRVYVMQHGEIVETGTTET 244 (534)
T ss_pred HHHHHHHHHHHHhCcEEEEEeccHH-HHHHhhhhEEEEeccEEeecCcHHH
Confidence 999999999864 999999999997 5888999999999999999998665
No 340
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=1.3e-30 Score=292.92 Aligned_cols=167 Identities=28% Similarity=0.408 Sum_probs=139.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEE-----------ECCEecccc-----cccceEEEEccCCcCCCC---CC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVT-----------LNGAVLESR-----LLKIISAYVMQDELLFPM---LT 61 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~-----------~~g~~~~~~-----~~~~~~~yv~Q~~~l~~~---lT 61 (602)
++|+||||||||||||+|+|.++|. +|+|. ++|+++... ..+..+++.+|.....|. .|
T Consensus 102 ~gLvG~NGaGKSTLlkiL~G~l~p~--~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~t 179 (590)
T PRK13409 102 TGILGPNGIGKTTAVKILSGELIPN--LGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGK 179 (590)
T ss_pred EEEECCCCCCHHHHHHHHhCCccCC--CccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhcch
Confidence 5899999999999999999998864 59997 999886431 112234666665433333 29
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 007474 62 VEETLMFSAECRLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSG 141 (602)
Q Consensus 62 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsg 141 (602)
|+|++... +..++++++++.+||.+..|+.+++ |||||||||+||++|+.+|++|+|||||++
T Consensus 180 v~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~~-----LSgGe~qrv~ia~al~~~p~lllLDEPts~ 242 (590)
T PRK13409 180 VRELLKKV------------DERGKLDEVVERLGLENILDRDISE-----LSGGELQRVAIAAALLRDADFYFFDEPTSY 242 (590)
T ss_pred HHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 99998631 2345789999999999888888765 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCC
Q 007474 142 LDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHG 188 (602)
Q Consensus 142 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 188 (602)
||+.++..+.+.|+++++ |+|||+++|+++ ++..++|++++|+++
T Consensus 243 LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 243 LDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred CCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999988 999999999987 688999999999764
No 341
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=3.3e-30 Score=246.35 Aligned_cols=145 Identities=24% Similarity=0.375 Sum_probs=118.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+||||||||||||+|.+ .+|++.++|.... ..++.++|++|
T Consensus 24 ~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~~--~~~~~~~~~~q---------------------------- 67 (176)
T cd03238 24 VVVTGVSGSGKSTLVNEGLY------ASGKARLISFLPK--FSRNKLIFIDQ---------------------------- 67 (176)
T ss_pred EEEECCCCCCHHHHHHHHhh------cCCcEEECCcccc--cccccEEEEhH----------------------------
Confidence 58999999999999999963 2599999887321 12334678776
Q ss_pred HHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCChHHHHHHHHHHHHhhC--CcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007474 81 KRKRERVEALIDQLGLRSA-AKTFIGDEQHRGVSGGERRRVSIGIDIIHD--PILLFLDEPTSGLDSTSAFKVVKVLGEI 157 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~--p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (602)
.++++.++|... .++.+. .||||||||++||++|+.+ |++++|||||+|||+.++..+.+.|+++
T Consensus 68 -------~~~l~~~~L~~~~~~~~~~-----~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~ 135 (176)
T cd03238 68 -------LQFLIDVGLGYLTLGQKLS-----TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGL 135 (176)
T ss_pred -------HHHHHHcCCCccccCCCcC-----cCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 246777888653 555544 5999999999999999999 9999999999999999999999999999
Q ss_pred HhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCC
Q 007474 158 AKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGT 195 (602)
Q Consensus 158 ~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 195 (602)
+++|+|||+++|+++ ++ +.+|++++|.+|+..+.|.
T Consensus 136 ~~~g~tvIivSH~~~-~~-~~~d~i~~l~~g~~~~~~~ 171 (176)
T cd03238 136 IDLGNTVILIEHNLD-VL-SSADWIIDFGPGSGKSGGK 171 (176)
T ss_pred HhCCCEEEEEeCCHH-HH-HhCCEEEEECCCCCCCCcE
Confidence 878999999999986 34 6899999998776555443
No 342
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.4e-31 Score=277.91 Aligned_cols=186 Identities=27% Similarity=0.428 Sum_probs=156.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
+|++||||+||||++++|-.... ..+|.|.+||+++.. ...|+.+|.||||..+|++ |+..|++|+- | +
T Consensus 567 vAlVG~SGaGKSTimRlLfRffd--v~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak----~-~ 638 (790)
T KOG0056|consen 567 VALVGPSGAGKSTIMRLLFRFFD--VNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAK----P-S 638 (790)
T ss_pred EEEECCCCCchhHHHHHHHHHhh--ccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecC----C-C
Confidence 58999999999999999999876 346999999999854 4678889999999999987 9999998852 2 2
Q ss_pred CCHHHHHHH--HHHHH-HHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 007474 78 VSKKRKRER--VEALI-DQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVL 154 (602)
Q Consensus 78 ~~~~~~~~~--v~~~l-~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (602)
.+++|..+. ...+= +.++..+-.+|+||++..| |||||||||+|||+++.+|.+++|||.||.||..+.+.|...|
T Consensus 639 AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL 717 (790)
T KOG0056|consen 639 ASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAAL 717 (790)
T ss_pred CChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHH
Confidence 233333222 22222 2367888899999997776 9999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 155 GEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 155 ~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+++. ++|.|++.|..+. .-.+|.|+++++|+|++.|..++
T Consensus 718 ~rlca-~RTtIVvAHRLST--ivnAD~ILvi~~G~IvErG~Hee 758 (790)
T KOG0056|consen 718 ARLCA-NRTTIVVAHRLST--IVNADLILVISNGRIVERGRHEE 758 (790)
T ss_pred HHHhc-CCceEEEeeeehh--eecccEEEEEeCCeEeecCcHHH
Confidence 99986 7899999999873 45699999999999999998766
No 343
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.7e-30 Score=293.88 Aligned_cols=170 Identities=25% Similarity=0.396 Sum_probs=142.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCC--cCCCCCCHHHHHHHHHHhcCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDE--LLFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~--~l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
++|+|||||||||||++|+|..+|. +|+|.+++. ..+||++|+. .+.+..|+.+++.- ..
T Consensus 341 ~~l~G~NGsGKSTLlk~l~G~~~p~--~G~i~~~~~--------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~----- 402 (638)
T PRK10636 341 IGLLGRNGAGKSTLIKLLAGELAPV--SGEIGLAKG--------IKLGYFAQHQLEFLRADESPLQHLAR---LA----- 402 (638)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CCeEEECCC--------EEEEEecCcchhhCCccchHHHHHHH---hC-----
Confidence 5899999999999999999998754 599999742 2479999974 35566788877531 11
Q ss_pred CHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRS-AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEI 157 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (602)
.....+++.++++.+++.. ..++.++. |||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++
T Consensus 403 -~~~~~~~~~~~L~~~~l~~~~~~~~~~~-----LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~ 476 (638)
T PRK10636 403 -PQELEQKLRDYLGGFGFQGDKVTEETRR-----FSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF 476 (638)
T ss_pred -chhhHHHHHHHHHHcCCChhHhcCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc
Confidence 1223467889999999963 56777765 9999999999999999999999999999999999999999999987
Q ss_pred HhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCcee-ecCCccc
Q 007474 158 AKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTV-YSGTPAT 198 (602)
Q Consensus 158 ~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~ 198 (602)
. .|||++|||+. .+..+||++++|++|+++ +.|+.++
T Consensus 477 --~-gtvi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~ 514 (638)
T PRK10636 477 --E-GALVVVSHDRH-LLRSTTDDLYLVHDGKVEPFDGDLED 514 (638)
T ss_pred --C-CeEEEEeCCHH-HHHHhCCEEEEEECCEEEEcCCCHHH
Confidence 3 49999999986 688999999999999997 7887665
No 344
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.97 E-value=2.4e-30 Score=317.37 Aligned_cols=180 Identities=22% Similarity=0.322 Sum_probs=154.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
+||+|+||||||||+++|.|+++ .+|+|.+||.++.. ...|+.++||||++.+|+. |++|||.... .
T Consensus 1248 vaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~ 1317 (1490)
T TIGR01271 1248 VGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------Q 1317 (1490)
T ss_pred EEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------C
Confidence 58999999999999999999985 36999999999864 3577889999999999987 9999995321 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRS-------AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
. .++++.++++..+|.+ -.|+.+|+ ....||||||||++|||||+++|+||+|||||++||..+...+
T Consensus 1318 ~----tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I 1392 (1490)
T TIGR01271 1318 W----SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQII 1392 (1490)
T ss_pred C----CHHHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHH
Confidence 1 2456777888877743 35788875 4456999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|++.. +++|||+++|.++ ....+|||++|++|+++..|++.+
T Consensus 1393 ~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~G~ivE~g~p~~ 1437 (1490)
T TIGR01271 1393 RKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEGSSVKQYDSIQK 1437 (1490)
T ss_pred HHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999874 4799999999986 456699999999999999999877
No 345
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5e-30 Score=239.01 Aligned_cols=159 Identities=26% Similarity=0.384 Sum_probs=140.9
Q ss_pred EEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc--cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 2 AILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR--LLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 2 ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~--~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
-|.|||||||||||++|+|+.+|. +|+|.++|.+++.. .+++.+-|+-.++.+=+.|||.|||.|..+..-.
T Consensus 32 ~i~G~NG~GKTtLLRilaGLl~p~--~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~---- 105 (209)
T COG4133 32 QITGPNGAGKTTLLRILAGLLRPD--AGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGS---- 105 (209)
T ss_pred EEECCCCCcHHHHHHHHHcccCCC--CCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCC----
Confidence 588999999999999999999865 59999999988642 3445677888889999999999999998765421
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007474 80 KKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK 159 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~ 159 (602)
...+.+.++++.+||....|.+++. ||-||||||+|||-+++.+++.|||||+++||......+-.++..-++
T Consensus 106 --~~~~~i~~Al~~vgL~g~~dlp~~~-----LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~ 178 (209)
T COG4133 106 --GNAATIWEALAQVGLAGLEDLPVGQ-----LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAA 178 (209)
T ss_pred --CchhhHHHHHHHcCcccccccchhh-----cchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhc
Confidence 2345788999999999999988875 999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEcCCcH
Q 007474 160 SGSVVIMSIHQPSY 173 (602)
Q Consensus 160 ~g~tvi~~~H~~~~ 173 (602)
+|..||.+||||..
T Consensus 179 ~GGiVllttHq~l~ 192 (209)
T COG4133 179 QGGIVLLTTHQPLP 192 (209)
T ss_pred CCCEEEEecCCccC
Confidence 99999999999874
No 346
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=4.4e-30 Score=230.31 Aligned_cols=163 Identities=29% Similarity=0.450 Sum_probs=142.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC-CceeEEEECCEeccc-ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE-SLKGTVTLNGAVLES-RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~-~~~G~i~~~g~~~~~-~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
+.|||||||||||||..+.|.+.+. ..+|++++|+++++. ...++++|..+||+.+||+++|.+||.|+. |..+
T Consensus 31 vtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAl----p~~~ 106 (213)
T COG4136 31 VTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFAL----PATL 106 (213)
T ss_pred EEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEec----Cccc
Confidence 3589999999999999999998753 468999999999875 345678999999999999999999999864 4455
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH-HH
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLG-EI 157 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~-~l 157 (602)
..+.++..++..+++.||....++... +||||||-||++-|+|+..|+.++||||+|.||..-+.++.+..- ++
T Consensus 107 KG~aRr~~a~aAL~~~gL~g~f~~dP~-----tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~ 181 (213)
T COG4136 107 KGNARRNAANAALERSGLDGAFHQDPA-----TLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEV 181 (213)
T ss_pred ccHHHHhhHHHHHHHhccchhhhcChh-----hcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHH
Confidence 556777889999999999988876654 599999999999999999999999999999999999999998764 45
Q ss_pred HhcCcEEEEEEcCCc
Q 007474 158 AKSGSVVIMSIHQPS 172 (602)
Q Consensus 158 ~~~g~tvi~~~H~~~ 172 (602)
...|..+|.+|||..
T Consensus 182 r~agiPtv~VTHD~~ 196 (213)
T COG4136 182 RAAGIPTVQVTHDLQ 196 (213)
T ss_pred HhcCCCeEEEecccc
Confidence 557999999999975
No 347
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.96 E-value=6.4e-30 Score=291.28 Aligned_cols=169 Identities=25% Similarity=0.359 Sum_probs=140.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCC-cCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDE-LLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~-~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
++|+|||||||||||++|+|.++|. +|+|.+ |.++ .+||++|+. .+++.+||.|++.+..... ...
T Consensus 348 ~~l~G~NGsGKSTLlk~l~G~~~p~--~G~i~~-~~~~-------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~ 414 (635)
T PRK11147 348 IALIGPNGCGKTTLLKLMLGQLQAD--SGRIHC-GTKL-------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN 414 (635)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCC--CcEEEE-CCCc-------EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc
Confidence 5899999999999999999998754 599998 4322 489999985 6889999999998753211 111
Q ss_pred HHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 80 KKRKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
....++.++++.+++. +..++.++. |||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++
T Consensus 415 --~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~- 486 (635)
T PRK11147 415 --GRPRHVLGYLQDFLFHPKRAMTPVKA-----LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY- 486 (635)
T ss_pred --chHHHHHHHHHhcCCCHHHHhChhhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-
Confidence 1235688899999996 456777764 9999999999999999999999999999999999999999999876
Q ss_pred hcCcEEEEEEcCCcHHHHHHhhHHhhhc-CCceeec
Q 007474 159 KSGSVVIMSIHQPSYRIFSLLNRLIFLS-HGQTVYS 193 (602)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~~L~-~G~iv~~ 193 (602)
+.|||++||+.. .+..+||++++|+ +|++..+
T Consensus 487 --~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~ 519 (635)
T PRK11147 487 --QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRY 519 (635)
T ss_pred --CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEc
Confidence 459999999986 6888999999997 7988654
No 348
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=2.1e-29 Score=232.77 Aligned_cols=188 Identities=24% Similarity=0.409 Sum_probs=162.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc---cccceEEEEccCC--cCCCCCCHHHHHHHHHHhcCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR---LLKIISAYVMQDE--LLFPMLTVEETLMFSAECRLP 75 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~---~~~~~~~yv~Q~~--~l~~~lTV~e~l~f~~~~~~~ 75 (602)
+||+|.||||||||.|+|+|.++|+ +|+|++||+++... ...+.+-.++||+ .+.|.+.+.+-|....+ +.
T Consensus 42 laiIG~NGSGKSTLakMlaGmi~PT--sG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~--l~ 117 (267)
T COG4167 42 LAIIGENGSGKSTLAKMLAGMIEPT--SGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLR--LN 117 (267)
T ss_pred EEEEccCCCcHhHHHHHHhcccCCC--CceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhh--hc
Confidence 4899999999999999999999864 59999999998532 2345678999997 47888888888876554 44
Q ss_pred CCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 007474 76 RSVSKKRKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVL 154 (602)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (602)
..+....+.+++.+.|+.+||- +.+|-++ ..||-||||||++||||+.+|+|++.||...+||...+.++.++.
T Consensus 118 T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~-----~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~ 192 (267)
T COG4167 118 TDLEPEQRRKQIFETLRMVGLLPDHANYYP-----HMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLM 192 (267)
T ss_pred ccCChHHHHHHHHHHHHHhccCccccccch-----hhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHH
Confidence 5677788889999999999975 4455444 469999999999999999999999999999999999999999999
Q ss_pred HHHHh-cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 155 GEIAK-SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 155 ~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
-+|.+ .|.+-|.++.+.. -+.++.|+|+||++|++|+.|++.+
T Consensus 193 LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~EG~vvE~G~t~~ 236 (267)
T COG4167 193 LELQEKQGISYIYVTQHIG-MIKHISDQVLVMHEGEVVERGSTAD 236 (267)
T ss_pred HHHHHHhCceEEEEechhh-HhhhhcccEEEEecCceeecCChhh
Confidence 99986 4999999998887 5889999999999999999999876
No 349
>PLN03073 ABC transporter F family; Provisional
Probab=99.96 E-value=2.3e-29 Score=287.74 Aligned_cols=172 Identities=24% Similarity=0.384 Sum_probs=137.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+|||||||||||++|+|+++|. +|+|.+++. ..+||++|+. .+.+++.++..+......+ ..
T Consensus 538 i~LvG~NGsGKSTLLk~L~Gll~p~--~G~I~~~~~--------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~-- 602 (718)
T PLN03073 538 IAMVGPNGIGKSTILKLISGELQPS--SGTVFRSAK--------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GV-- 602 (718)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCC--CceEEECCc--------eeEEEEeccc--cccCCcchhHHHHHHHhcC-CC--
Confidence 5899999999999999999998854 599998752 3489999975 3456666664332111111 11
Q ss_pred HHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007474 81 KRKRERVEALIDQLGLRS-AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK 159 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~ 159 (602)
.++++.++++.+|+.+ ..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++.
T Consensus 603 --~~~~i~~~L~~~gl~~~~~~~~~~-----~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-- 673 (718)
T PLN03073 603 --PEQKLRAHLGSFGVTGNLALQPMY-----TLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF-- 673 (718)
T ss_pred --CHHHHHHHHHHCCCChHHhcCCcc-----ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--
Confidence 2356889999999974 5566555 59999999999999999999999999999999999999998888764
Q ss_pred cCcEEEEEEcCCcHHHHHHhhHHhhhcCCcee-ecCCccc
Q 007474 160 SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTV-YSGTPAT 198 (602)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~ 198 (602)
+ .|||++||++. .+..+||++++|++|+++ +.|+..+
T Consensus 674 ~-gtvIivSHd~~-~i~~~~drv~~l~~G~i~~~~g~~~~ 711 (718)
T PLN03073 674 Q-GGVLMVSHDEH-LISGSVDELWVVSEGKVTPFHGTFHD 711 (718)
T ss_pred C-CEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 3 49999999987 588899999999999998 7776544
No 350
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=3.6e-29 Score=243.43 Aligned_cols=185 Identities=25% Similarity=0.358 Sum_probs=162.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+|+||||||||||+|+|.++|+ +|+|.++|+-...- .=.-.+-|.+|.+||+.+.+.+. ++++
T Consensus 56 vGiiG~NGaGKSTLlkliaGi~~Pt--~G~v~v~G~v~~li---------~lg~Gf~pelTGreNi~l~~~~~---G~~~ 121 (249)
T COG1134 56 VGIIGHNGAGKSTLLKLIAGIYKPT--SGKVKVTGKVAPLI---------ELGAGFDPELTGRENIYLRGLIL---GLTR 121 (249)
T ss_pred EEEECCCCCcHHHHHHHHhCccCCC--CceEEEcceEehhh---------hcccCCCcccchHHHHHHHHHHh---CccH
Confidence 5899999999999999999999865 59999999743211 11123567899999999977654 5788
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKS 160 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~ 160 (602)
++.+++++++++.-+|.+..|.++. .+|-|++-|++.|.+...+|+||++||-.+--|+.-+++-.+.++++.++
T Consensus 122 ~ei~~~~~eIieFaELG~fi~~Pvk-----tYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~ 196 (249)
T COG1134 122 KEIDEKVDEIIEFAELGDFIDQPVK-----TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK 196 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchh-----hccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999988775 59999999999999999999999999999999999999999999999888
Q ss_pred CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccchHHHHHHH
Q 007474 161 GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPATDFSLFFAE 206 (602)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~~f~~ 206 (602)
++|||+++|++. .+.++|||+++|++|++...|++++ +.+++..
T Consensus 197 ~~tiv~VSHd~~-~I~~~Cd~~i~l~~G~i~~~G~~~~-vi~~Y~~ 240 (249)
T COG1134 197 NKTIVLVSHDLG-AIKQYCDRAIWLEHGQIRMEGSPEE-VIPAYEE 240 (249)
T ss_pred CCEEEEEECCHH-HHHHhcCeeEEEeCCEEEEcCCHHH-HHHHHHH
Confidence 899999999997 6999999999999999999999998 6555543
No 351
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.96 E-value=1.6e-29 Score=234.65 Aligned_cols=116 Identities=34% Similarity=0.558 Sum_probs=106.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+||||||||||+++|+|+.++. +|+|.++|+ +.++|++|
T Consensus 29 ~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~~~~~--------~~i~~~~~---------------------------- 70 (144)
T cd03221 29 IGLVGRNGAGKSTLLKLIAGELEPD--EGIVTWGST--------VKIGYFEQ---------------------------- 70 (144)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCC--ceEEEECCe--------EEEEEEcc----------------------------
Confidence 4899999999999999999998754 699999984 35789988
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKS 160 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~ 160 (602)
||+||+||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 71 -------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--- 116 (144)
T cd03221 71 -------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--- 116 (144)
T ss_pred -------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---
Confidence 9999999999999999999999999999999999999999999987
Q ss_pred CcEEEEEEcCCcHHHHHHhhHHhhhcCCc
Q 007474 161 GSVVIMSIHQPSYRIFSLLNRLIFLSHGQ 189 (602)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 189 (602)
++|+++++|+++ ++.+++|++++|++|+
T Consensus 117 ~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 117 PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 479999999987 6888999999999886
No 352
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.96 E-value=1.5e-29 Score=288.80 Aligned_cols=169 Identities=21% Similarity=0.289 Sum_probs=136.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+||||||||||+++|+|+.++. +|+|.+++ ++.++||+|++.+++. |++||+.+....... ..+
T Consensus 481 ~~IvG~nGsGKSTLl~lL~Gl~~~~--~G~i~~~~--------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~--~~~ 547 (659)
T TIGR00954 481 LLICGPNGCGKSSLFRILGELWPVY--GGRLTKPA--------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDM--KRR 547 (659)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CCeEeecC--------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhh--hcc
Confidence 4899999999999999999998754 59998764 3468999999988887 999999875321100 001
Q ss_pred HHHHHHHHHHHHHcCCCcccccccC----CCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIG----DEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg----~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
...+++++++++.+++.+..++..| ......||||||||++|||+|+++|++++|||||+|||+.++..+.+.+++
T Consensus 548 ~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~ 627 (659)
T TIGR00954 548 GLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE 627 (659)
T ss_pred CCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 1124567889999999876554322 112357999999999999999999999999999999999999999998876
Q ss_pred HHhcCcEEEEEEcCCcHHHHHHhhHHhhhcC
Q 007474 157 IAKSGSVVIMSIHQPSYRIFSLLNRLIFLSH 187 (602)
Q Consensus 157 l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 187 (602)
.|+|+|+++|+++ ..+.+|++++|++
T Consensus 628 ---~~~tvI~isH~~~--~~~~~d~il~l~~ 653 (659)
T TIGR00954 628 ---FGITLFSVSHRKS--LWKYHEYLLYMDG 653 (659)
T ss_pred ---cCCEEEEEeCchH--HHHhCCEEEEEeC
Confidence 3899999999986 4588999999963
No 353
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3e-30 Score=265.58 Aligned_cols=184 Identities=29% Similarity=0.471 Sum_probs=155.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
+||+||||+||||++++|-..+.+. +|.|.+||+++.. ...|+.+|.||||..||.+ |...|+.|+-. .
T Consensus 292 vAiVg~SG~gKsTI~rllfRFyD~~--sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFND-ti~yni~ygr~-----~ 363 (497)
T COG5265 292 VAIVGESGAGKSTILRLLFRFYDVN--SGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND-TIAYNIKYGRP-----D 363 (497)
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCCc--CceEEEcchhHHHhHHHHHHHHhCcCcccceehhh-hHHHHHhccCc-----c
Confidence 5899999999999999999998854 5999999998753 4677889999999999876 99999988632 2
Q ss_pred CCHHHHH-----HHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 007474 78 VSKKRKR-----ERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK 152 (602)
Q Consensus 78 ~~~~~~~-----~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (602)
.+.+|.. ..+...++. +.+-.|+.||++..+ |||||||||+|||+++.+|+||+|||.||.||..+.+++..
T Consensus 364 at~eev~aaa~~aqi~~fi~~--lP~gy~t~Vgerglk-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~ 440 (497)
T COG5265 364 ATAEEVGAAAEAAQIHDFIQS--LPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQA 440 (497)
T ss_pred ccHHHHHHHHHHhhhhHHHHh--Cchhhhcccchheee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHH
Confidence 3333332 233344443 456789999987765 99999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 153 VLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 153 ~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.|++++ .|+|.+++.|..+. .--+|+|++|++|+|++.|+..+
T Consensus 441 ~l~~~~-~~rttlviahrlst--i~~adeiivl~~g~i~erg~h~~ 483 (497)
T COG5265 441 ALREVS-AGRTTLVIAHRLST--IIDADEIIVLDNGRIVERGTHEE 483 (497)
T ss_pred HHHHHh-CCCeEEEEeehhhh--ccCCceEEEeeCCEEEecCcHHH
Confidence 999987 58999999999873 44589999999999999998776
No 354
>PLN03232 ABC transporter C family member; Provisional
Probab=99.96 E-value=2.7e-29 Score=308.47 Aligned_cols=172 Identities=29% Similarity=0.487 Sum_probs=142.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+||||||||||+++|.|.+++. +|.+. ..++.++||+|++.+++. |++||+.|+.. .
T Consensus 646 vaIvG~sGSGKSTLl~lLlG~~~~~--~G~i~---------~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~~------~-- 705 (1495)
T PLN03232 646 VAIVGGTGEGKTSLISAMLGELSHA--ETSSV---------VIRGSVAYVPQVSWIFNA-TVRENILFGSD------F-- 705 (1495)
T ss_pred EEEECCCCCcHHHHHHHHhCCCccc--CCCEE---------EecCcEEEEcCccccccc-cHHHHhhcCCc------c--
Confidence 5899999999999999999998853 47653 245678999999999976 99999998631 1
Q ss_pred HHHHHHHHHHHHHcCCC-------cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 007474 81 KRKRERVEALIDQLGLR-------SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKV 153 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (602)
.+++++++++..+|. +-.+|.+|+.. ..||||||||++||||+.++|+|++||||||+||+.++.++++.
T Consensus 706 --~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G-~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~ 782 (1495)
T PLN03232 706 --ESERYWRAIDVTALQHDLDLLPGRDLTEIGERG-VNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDS 782 (1495)
T ss_pred --CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCC-cccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHH
Confidence 234566666666553 34478888754 46999999999999999999999999999999999999999775
Q ss_pred -HHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 154 -LGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 154 -l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
++.+ .+++|+|++||+++ ....+|+|++|++|+++..|+.++
T Consensus 783 ~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~e 825 (1495)
T PLN03232 783 CMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAE 825 (1495)
T ss_pred Hhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHH
Confidence 4543 36899999999985 578899999999999999998766
No 355
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.1e-29 Score=284.25 Aligned_cols=178 Identities=25% Similarity=0.370 Sum_probs=137.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHH----------
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSA---------- 70 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~---------- 70 (602)
++|+||||||||||||+|+|..+|+ +|+|.++|.. .++|++|+.... ..|+.+.+.-..
T Consensus 30 v~LvG~NGsGKSTLLkiL~G~~~pd--~G~I~~~~~~--------~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~ 98 (638)
T PRK10636 30 VGLVGKNGCGKSTLLALLKNEISAD--GGSYTFPGNW--------QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQL 98 (638)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CceEEecCCC--------EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHH
Confidence 5899999999999999999998754 5999998742 267888864332 245554432110
Q ss_pred -------------HhcC-CCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEE
Q 007474 71 -------------ECRL-PRSVSKKRKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFL 135 (602)
Q Consensus 71 -------------~~~~-~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllL 135 (602)
.+.. .......+.+++++++++.+|+. +..++.+++ |||||||||+||++|+.+|++|||
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~-----LSgGerqRv~LA~aL~~~P~lLLL 173 (638)
T PRK10636 99 HDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSD-----FSGGWRMRLNLAQALICRSDLLLL 173 (638)
T ss_pred HHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhh-----cCHHHHHHHHHHHHHccCCCEEEE
Confidence 0000 00001112346789999999997 467777765 999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCcee-ecCCccc
Q 007474 136 DEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTV-YSGTPAT 198 (602)
Q Consensus 136 DEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~ 198 (602)
||||+|||+.+...+.+.|+++ +.|||+++|+.. .+.++||++++|++|+++ |.|+.+.
T Consensus 174 DEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~l~~~~d~i~~L~~G~i~~~~g~~~~ 233 (638)
T PRK10636 174 DEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-FLDPIVDKIIHIEQQSLFEYTGNYSS 233 (638)
T ss_pred cCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHHhcCEEEEEeCCEEEEecCCHHH
Confidence 9999999999999999998875 579999999986 588899999999999986 5665443
No 356
>PLN03130 ABC transporter C family member; Provisional
Probab=99.96 E-value=3.7e-29 Score=307.67 Aligned_cols=171 Identities=28% Similarity=0.471 Sum_probs=143.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCce-eEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLK-GTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~-G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
++|+||||||||||+++|.|.+++ .+ |+|.+ +..++||+|++.+++. |++||+.|+.. .
T Consensus 646 vaIvG~sGSGKSTLl~lLlG~~~~--~~GG~I~l----------~~~Iayv~Q~p~Lfng-TIreNI~fg~~------~- 705 (1622)
T PLN03130 646 VAIVGSTGEGKTSLISAMLGELPP--RSDASVVI----------RGTVAYVPQVSWIFNA-TVRDNILFGSP------F- 705 (1622)
T ss_pred EEEECCCCCCHHHHHHHHHHhhcc--CCCceEEE----------cCeEEEEcCccccCCC-CHHHHHhCCCc------c-
Confidence 589999999999999999999874 57 89875 3458999999999875 99999998632 1
Q ss_pred HHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 007474 80 KKRKRERVEALIDQLGLRS-------AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK 152 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (602)
.+++++++++..+|.+ -.+|.+|+.. ..||||||||++||||+..+|+|++||||||+||+++++++++
T Consensus 706 ---d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G-~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~ 781 (1622)
T PLN03130 706 ---DPERYERAIDVTALQHDLDLLPGGDLTEIGERG-VNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFD 781 (1622)
T ss_pred ---cHHHHHHHHHHhCcHHHHHhCCCcccccccCCC-CCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHH
Confidence 2456677777766543 3478888753 4699999999999999999999999999999999999998875
Q ss_pred -HHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 153 -VLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 153 -~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.++.+. +|+|+|++||+++ ....+|+|++|++|+++..|+.++
T Consensus 782 ~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt~~e 825 (1622)
T PLN03130 782 KCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGTYEE 825 (1622)
T ss_pred HHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCCHHH
Confidence 556553 5899999999985 578899999999999999998776
No 357
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.1e-28 Score=232.14 Aligned_cols=127 Identities=38% Similarity=0.650 Sum_probs=113.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+||||||||||+++|+|.+++ .+|+|.++|.++.. ...++.++|++|
T Consensus 28 ~~i~G~nGsGKStll~~l~g~~~~--~~G~i~~~~~~~~~~~~~~~~~~i~~~~q------------------------- 80 (157)
T cd00267 28 VALVGPNGSGKSTLLRAIAGLLKP--TSGEILIDGKDIAKLPLEELRRRIGYVPQ------------------------- 80 (157)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcccCCHHHHHhceEEEee-------------------------
Confidence 479999999999999999999875 46999999987643 233456888888
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEI 157 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (602)
|||||+||++||++++.+|++++|||||+|||..++..+.+.|+++
T Consensus 81 ----------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~ 126 (157)
T cd00267 81 ----------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL 126 (157)
T ss_pred ----------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999
Q ss_pred HhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCc
Q 007474 158 AKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQ 189 (602)
Q Consensus 158 ~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 189 (602)
.++++|+++++|+++ ++...+|+++++++|+
T Consensus 127 ~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 127 AEEGRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred HHCCCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 877899999999987 5777889999998875
No 358
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.96 E-value=1.5e-28 Score=280.08 Aligned_cols=176 Identities=28% Similarity=0.398 Sum_probs=133.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHH------------
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMF------------ 68 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f------------ 68 (602)
++|+|||||||||||++|+|..+|. +|+|.++|.. .++|++|++......+|.+++..
T Consensus 32 v~LvG~NGsGKSTLLriiaG~~~p~--~G~I~~~~~~--------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 101 (635)
T PRK11147 32 VCLVGRNGAGKSTLMKILNGEVLLD--DGRIIYEQDL--------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRY 101 (635)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCC--CeEEEeCCCC--------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHH
Confidence 5899999999999999999998754 5999998731 14666665433233455554321
Q ss_pred ------------------HHHhc--CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhh
Q 007474 69 ------------------SAECR--LPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIH 128 (602)
Q Consensus 69 ------------------~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~ 128 (602)
...+. .. .....+.+++++++++.+|+.. ++.++ .|||||||||+||++|+.
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~l~~lgl~~--~~~~~-----~LSgGekqRv~LAraL~~ 173 (635)
T PRK11147 102 HDISHLVETDPSEKNLNELAKLQEQLD-HHNLWQLENRINEVLAQLGLDP--DAALS-----SLSGGWLRKAALGRALVS 173 (635)
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHhCCCCC--CCchh-----hcCHHHHHHHHHHHHHhc
Confidence 11000 00 0001123467899999999963 55554 599999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCcee-ecCCccc
Q 007474 129 DPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTV-YSGTPAT 198 (602)
Q Consensus 129 ~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~ 198 (602)
+|++|||||||+|||+.++..+.+.|+++ +.|||+++|++. .+.++||++++|++|+++ +.|+.++
T Consensus 174 ~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd~~-~l~~~~d~i~~L~~G~i~~~~g~~~~ 240 (635)
T PRK11147 174 NPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDRS-FIRNMATRIVDLDRGKLVSYPGNYDQ 240 (635)
T ss_pred CCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCCHH-HHHHhcCeEEEEECCEEEEecCCHHH
Confidence 99999999999999999999999999987 359999999986 588899999999999997 5576543
No 359
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.95 E-value=3.4e-28 Score=298.44 Aligned_cols=173 Identities=24% Similarity=0.440 Sum_probs=138.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+|||||||||||++|+|..++. +|+|.++| .++||+|++.+++. ||+||+.|+... ..
T Consensus 455 ~~I~G~~GsGKSTLl~~l~G~~~~~--~G~i~~~g----------~iayv~Q~~~l~~~-Ti~eNI~~g~~~------~~ 515 (1490)
T TIGR01271 455 LAVAGSTGSGKSSLLMMIMGELEPS--EGKIKHSG----------RISFSPQTSWIMPG-TIKDNIIFGLSY------DE 515 (1490)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CceEEECC----------EEEEEeCCCccCCc-cHHHHHHhcccc------ch
Confidence 5899999999999999999998854 59999998 37999999999885 999999986421 11
Q ss_pred HHHHH-----HHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH-H
Q 007474 81 KRKRE-----RVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKV-L 154 (602)
Q Consensus 81 ~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~-l 154 (602)
...++ ..++.++.+. +-.+|.+|+. ...||||||||++||||++.+|++++|||||++||+.++..+.+. +
T Consensus 516 ~~~~~~~~~~~L~~~l~~l~--~g~~t~vg~~-g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l 592 (1490)
T TIGR01271 516 YRYTSVIKACQLEEDIALFP--EKDKTVLGEG-GITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCL 592 (1490)
T ss_pred HHHHHHHHHHhHHHHHHhcc--ccccccccCc-CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 11111 1122222222 2235667754 557999999999999999999999999999999999999999985 6
Q ss_pred HHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 155 GEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 155 ~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+++. +|+|+|++||++.. .+.+|++++|++|+++..|+.++
T Consensus 593 ~~~~-~~~tvilvtH~~~~--~~~ad~ii~l~~g~i~~~g~~~~ 633 (1490)
T TIGR01271 593 CKLM-SNKTRILVTSKLEH--LKKADKILLLHEGVCYFYGTFSE 633 (1490)
T ss_pred HHHh-cCCeEEEEeCChHH--HHhCCEEEEEECCEEEEEcCHHH
Confidence 6664 58999999999863 45699999999999999998766
No 360
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=7.6e-28 Score=220.84 Aligned_cols=185 Identities=29% Similarity=0.493 Sum_probs=143.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCE---ecc-----cc----cccceEEEEccCCc--CCCCC----CH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGA---VLE-----SR----LLKIISAYVMQDEL--LFPML----TV 62 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~---~~~-----~~----~~~~~~~yv~Q~~~--l~~~l----TV 62 (602)
++|+|.|||||||||++|++++.|. .|+|.+.-. +.+ +. ..|...|+|.|++. +-... .+
T Consensus 35 LgiVGESGSGKtTLL~~is~rl~p~--~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~Ni 112 (258)
T COG4107 35 LGIVGESGSGKTTLLKCISGRLTPD--AGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNI 112 (258)
T ss_pred EEEEecCCCcHHhHHHHHhcccCCC--CCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCcc
Confidence 4899999999999999999999865 499988653 221 11 12334699999853 33222 33
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 007474 63 EETLMFSAECRLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGL 142 (602)
Q Consensus 63 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgL 142 (602)
.|-++-. -.| . -...++...+++++++++..+ + +..++..|||+|||+.|||-|++.|+++|+||||.||
T Consensus 113 GERlma~-G~R---H--YG~iR~~a~~WL~~VEI~~~R---i-DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGL 182 (258)
T COG4107 113 GERLMAI-GAR---H--YGNIRAEAQDWLEEVEIDLDR---I-DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGL 182 (258)
T ss_pred chhHHhh-hhh---h--hhhHHHHHHHHHHhcccCccc---c-cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCc
Confidence 3433211 111 1 124566778899999987532 3 3467889999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 143 DSTSAFKVVKVLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 143 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
|..-+..++++++.|.++ |..+++++||.. .+--++||.++|++|++++.|-.+.
T Consensus 183 DVSVQARLLDllrgLv~~l~la~viVTHDl~-VarLla~rlmvmk~g~vve~GLTDr 238 (258)
T COG4107 183 DVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLADRLMVMKQGQVVESGLTDR 238 (258)
T ss_pred chhhHHHHHHHHHHHHHhcCceEEEEechhH-HHHHhhhcceeecCCCEeccccccc
Confidence 999999999999999875 899999999986 3666889999999999999997665
No 361
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.95 E-value=4.5e-28 Score=298.15 Aligned_cols=175 Identities=25% Similarity=0.430 Sum_probs=139.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+|||||||||||++|+|.+++ .+|+|.++| .++||+|++.+++ .||+||+.|+.. ..+
T Consensus 667 v~IvG~~GsGKSTLl~~l~g~~~~--~~G~i~~~g----------~i~yv~Q~~~l~~-~Ti~eNI~~g~~------~~~ 727 (1522)
T TIGR00957 667 VAVVGQVGCGKSSLLSALLAEMDK--VEGHVHMKG----------SVAYVPQQAWIQN-DSLRENILFGKA------LNE 727 (1522)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcc--CCcEEEECC----------EEEEEcCCccccC-CcHHHHhhcCCc------cCH
Confidence 589999999999999999999885 459999987 3799999998765 699999988532 122
Q ss_pred HHHHHHHHH---HHHHcCC-CcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 81 KRKRERVEA---LIDQLGL-RSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 81 ~~~~~~v~~---~l~~lgL-~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
++. +++.+ +.+.++. .+-.+|.+|+. ...||||||||++||||++.+|++++|||||++||+.++..+.+.+.+
T Consensus 728 ~~~-~~~~~~~~l~~~l~~~~~g~~t~ig~~-g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~ 805 (1522)
T TIGR00957 728 KYY-QQVLEACALLPDLEILPSGDRTEIGEK-GVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIG 805 (1522)
T ss_pred HHH-HHHHHHhCCHHHHHhcCCCCCceecCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhh
Confidence 111 11211 2233332 22345777764 457999999999999999999999999999999999999999999975
Q ss_pred HH--hcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 157 IA--KSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 157 l~--~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.. .+|+|+|++||+++ ..+.+|++++|++|+++..|+.++
T Consensus 806 ~~~~~~~~tvIlvTH~~~--~l~~~D~ii~l~~G~i~~~g~~~~ 847 (1522)
T TIGR00957 806 PEGVLKNKTRILVTHGIS--YLPQVDVIIVMSGGKISEMGSYQE 847 (1522)
T ss_pred hhhhhcCCEEEEEeCChh--hhhhCCEEEEecCCeEEeeCCHHH
Confidence 42 35899999999986 346699999999999999998766
No 362
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=1.6e-27 Score=241.21 Aligned_cols=180 Identities=27% Similarity=0.377 Sum_probs=138.2
Q ss_pred CEEECCCCCcHHHHHHHHH-----cCCC-----CC---------CceeEEEECCEeccccc-------------ccc---
Q 007474 1 MAILGASGAGKSTLIDALA-----GRIE-----KE---------SLKGTVTLNGAVLESRL-------------LKI--- 45 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~-----G~~~-----~~---------~~~G~i~~~g~~~~~~~-------------~~~--- 45 (602)
++|.|+||||||||++.+. ..+. +. ...--|.++..|+.... .|+
T Consensus 24 ~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ty~~~~~~ir~~fC 103 (261)
T cd03271 24 TCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPATYTGVFDEIRELFC 103 (261)
T ss_pred EEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHHHHHHHHHHHHHhcC
Confidence 5899999999999998552 1100 10 11123677777763210 000
Q ss_pred -------------eEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCC
Q 007474 46 -------------ISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSKKRKRERVEALIDQLGLRS-AAKTFIGDEQHRG 111 (602)
Q Consensus 46 -------------~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~ 111 (602)
.+.|..++......+||.|++.|...++ ..+++.++++.+||.+ ..+..+. .
T Consensus 104 ~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL~~l~l~~~~~-----~ 169 (261)
T cd03271 104 EVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGLGYIKLGQPAT-----T 169 (261)
T ss_pred ccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCCchhhhcCccc-----c
Confidence 1345555656678999999999876532 1346788999999987 3555544 5
Q ss_pred CChHHHHHHHHHHHHhhC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhh---
Q 007474 112 VSGGERRRVSIGIDIIHD---PILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFL--- 185 (602)
Q Consensus 112 LSgGerqRv~ia~~L~~~---p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L--- 185 (602)
||||||||+.||++|+.+ |++++|||||+|||+..+..+.+.|++++++|.|||+++|++. ..+.+|+++.|
T Consensus 170 LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~--~i~~aD~ii~Lgp~ 247 (261)
T cd03271 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD--VIKCADWIIDLGPE 247 (261)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCC
Confidence 999999999999999996 7999999999999999999999999999988999999999986 34679999999
Q ss_pred ---cCCceeecCCc
Q 007474 186 ---SHGQTVYSGTP 196 (602)
Q Consensus 186 ---~~G~iv~~G~~ 196 (602)
++|++++.|++
T Consensus 248 ~g~~~G~iv~~Gt~ 261 (261)
T cd03271 248 GGDGGGQVVASGTP 261 (261)
T ss_pred cCCCCCEEEEeCCC
Confidence 78999999864
No 363
>PTZ00243 ABC transporter; Provisional
Probab=99.95 E-value=1.4e-27 Score=293.26 Aligned_cols=172 Identities=31% Similarity=0.458 Sum_probs=134.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+|||||||||||++|+|.+++. +|+|.++ +.++||+|++.+++ .||+||+.|... ...
T Consensus 689 ~~IiG~nGsGKSTLL~~i~G~~~~~--~G~i~~~----------~~i~yv~Q~~~l~~-~Tv~enI~~~~~------~~~ 749 (1560)
T PTZ00243 689 TVVLGATGSGKSTLLQSLLSQFEIS--EGRVWAE----------RSIAYVPQQAWIMN-ATVRGNILFFDE------EDA 749 (1560)
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCC--CcEEEEC----------CeEEEEeCCCccCC-CcHHHHHHcCCh------hhH
Confidence 5899999999999999999998854 5999863 35899999998775 699999987421 111
Q ss_pred HHHH-----HHHHHHHHHc--CCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 007474 81 KRKR-----ERVEALIDQL--GLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKV 153 (602)
Q Consensus 81 ~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (602)
+..+ ..+++.++.+ |+ ++.+|+ ....||||||||++|||||+.+|++++|||||++||+.++..+++.
T Consensus 750 ~~~~~~~~~~~l~~~l~~l~~g~----~t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~ 824 (1560)
T PTZ00243 750 ARLADAVRVSQLEADLAQLGGGL----ETEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEE 824 (1560)
T ss_pred HHHHHHHHHhhhHHHHHHhhccc----hHHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHH
Confidence 1111 1223344444 33 344543 3456999999999999999999999999999999999999999875
Q ss_pred HHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 154 LGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 154 l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+.....+|+|+|++||++. ..+.+|++++|++|++++.|+.++
T Consensus 825 ~~~~~~~~~TvIlvTH~~~--~~~~ad~ii~l~~G~i~~~G~~~~ 867 (1560)
T PTZ00243 825 CFLGALAGKTRVLATHQVH--VVPRADYVVALGDGRVEFSGSSAD 867 (1560)
T ss_pred HHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEEecCHHH
Confidence 4322335899999999986 357899999999999999998766
No 364
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=6.1e-27 Score=233.64 Aligned_cols=100 Identities=24% Similarity=0.402 Sum_probs=89.8
Q ss_pred HHHHHHcCCCc-ccccccCCCCCCCCChHHHHHHHHHHHHhhCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEE
Q 007474 88 EALIDQLGLRS-AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDP--ILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVV 164 (602)
Q Consensus 88 ~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p--~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 164 (602)
.+.++.++|.+ ..+..+. .||||||||++||++|+.+| ++++|||||+|||+.++..+.+.|++++++|.||
T Consensus 118 ~~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~ti 192 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAP-----TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTV 192 (226)
T ss_pred HHHHHHCCCCcccccCccC-----cCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 56899999976 3566554 59999999999999999998 5999999999999999999999999998889999
Q ss_pred EEEEcCCcHHHHHHhhHHhhh------cCCceeecC
Q 007474 165 IMSIHQPSYRIFSLLNRLIFL------SHGQTVYSG 194 (602)
Q Consensus 165 i~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G 194 (602)
|+++|+++ ++ +.||++++| ++|+++++|
T Consensus 193 i~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 193 LVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred EEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 99999986 44 699999999 889999876
No 365
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=3.6e-27 Score=259.13 Aligned_cols=175 Identities=31% Similarity=0.449 Sum_probs=141.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhc-------
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECR------- 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~------- 73 (602)
+||+|+||||||||||+|+|...+. +|+|...+. ..++|++|+..+.+..||.+.+.-+..-.
T Consensus 32 iGLvG~NGaGKSTLLkilaG~~~~~--~G~i~~~~~--------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~ 101 (530)
T COG0488 32 IGLVGRNGAGKSTLLKILAGELEPD--SGEVTRPKG--------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAEL 101 (530)
T ss_pred EEEECCCCCCHHHHHHHHcCCCcCC--CCeEeecCC--------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHH
Confidence 4899999999999999999998754 599987531 24799999999999999999886543210
Q ss_pred ------CCCC--------------CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEE
Q 007474 74 ------LPRS--------------VSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILL 133 (602)
Q Consensus 74 ------~~~~--------------~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~ll 133 (602)
++.. ...-+.+.++..++..+|+.+. ++.+++ ||||||+||++|++|+.+|++|
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~-----LSGG~r~Rv~LA~aL~~~pDlL 175 (530)
T COG0488 102 EEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSS-----LSGGWRRRVALARALLEEPDLL 175 (530)
T ss_pred HHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhh-----cCHHHHHHHHHHHHHhcCCCEE
Confidence 0000 0001123678889999999887 777775 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCcee-ecCC
Q 007474 134 FLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTV-YSGT 195 (602)
Q Consensus 134 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~ 195 (602)
+|||||++||..+...+-+.|++. +| |+|++|||- .-+-+.|++|+-++.|++. |.|.
T Consensus 176 LLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR-~FLd~V~t~I~~ld~g~l~~y~Gn 234 (530)
T COG0488 176 LLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDR-YFLDNVATHILELDRGKLTPYKGN 234 (530)
T ss_pred EEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCH-HHHHHHhhheEEecCCceeEecCC
Confidence 999999999999999999999853 46 999999994 4688899999999999875 4554
No 366
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.94 E-value=8.8e-28 Score=234.52 Aligned_cols=155 Identities=20% Similarity=0.269 Sum_probs=122.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCC-------CceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKE-------SLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~-------~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~ 73 (602)
++|+||||||||||+++|+|+.++. ...|++.++|++......++.++||+|++..+ |.. .
T Consensus 25 ~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~----------~~~--~ 92 (197)
T cd03278 25 TAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR----------YSI--I 92 (197)
T ss_pred EEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----------eeE--E
Confidence 4799999999999999999987532 12357888887764433456789999988665 110 0
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHH
Q 007474 74 LPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDII----HDPILLFLDEPTSGLDSTSAFK 149 (602)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~----~~p~lllLDEPtsgLD~~~~~~ 149 (602)
..++++++++. .+..++.++ .||||||||++||++|+ .+|++++|||||+|||+..+..
T Consensus 93 ---------~~~~~~~~l~~---~~~~~~~~~-----~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~ 155 (197)
T cd03278 93 ---------SQGDVSEIIEA---PGKKVQRLS-----LLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVER 155 (197)
T ss_pred ---------ehhhHHHHHhC---CCccccchh-----hcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHH
Confidence 13466777776 444555554 59999999999999997 4669999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcC
Q 007474 150 VVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSH 187 (602)
Q Consensus 150 i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 187 (602)
+.+.|+++++ +.|||+++|++. ..+.+|+++.+..
T Consensus 156 l~~~l~~~~~-~~tiIiitH~~~--~~~~~d~v~~~~~ 190 (197)
T cd03278 156 FARLLKEFSK-ETQFIVITHRKG--TMEAADRLYGVTM 190 (197)
T ss_pred HHHHHHHhcc-CCEEEEEECCHH--HHhhcceEEEEEe
Confidence 9999999975 689999999986 3578999998864
No 367
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.94 E-value=6.7e-28 Score=221.44 Aligned_cols=181 Identities=27% Similarity=0.409 Sum_probs=154.0
Q ss_pred EEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCC
Q 007474 2 AILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 2 ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
-++|||||||||||-.++|+.+ .+|+|.++|.++.. ....+..+|..|+..-...+.|.++|... .
T Consensus 29 HliGPNGaGKSTLLA~lAGm~~---~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~--------q 97 (248)
T COG4138 29 HLVGPNGAGKSTLLARMAGMTS---GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLH--------Q 97 (248)
T ss_pred EEECCCCccHHHHHHHHhCCCC---CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhc--------C
Confidence 4799999999999999999975 46999999999854 23445568999987766678899887642 3
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhh-----CC--cEEEEeCCCCCCCHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIH-----DP--ILLFLDEPTSGLDSTSAFKVV 151 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~-----~p--~lllLDEPtsgLD~~~~~~i~ 151 (602)
+.++....++++.+.++|.+...+.+ ..|||||-|||-+|...+. || ++|+||||.++||......+-
T Consensus 98 P~~~~a~~i~~i~~~L~l~DKL~Rs~-----~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLd 172 (248)
T COG4138 98 PDKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALD 172 (248)
T ss_pred chHHHHHHHHHHHhhhcccchhhhhh-----hhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHH
Confidence 44667788999999999987665554 3699999999999987663 44 699999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccch
Q 007474 152 KVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPATD 199 (602)
Q Consensus 152 ~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 199 (602)
.+|.+++++|.+||++.||.. ...+.+|++++|++|++...|..++.
T Consensus 173 rll~~~c~~G~~vims~HDLN-hTLrhA~~~wLL~rG~l~~~G~~~eV 219 (248)
T COG4138 173 RLLSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKRGKLLASGRREEV 219 (248)
T ss_pred HHHHHHHhCCcEEEEeccchh-hHHHHHHHHHHHhcCeEEeecchhhh
Confidence 999999999999999999998 58899999999999999999988773
No 368
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.94 E-value=3.5e-27 Score=216.43 Aligned_cols=121 Identities=40% Similarity=0.682 Sum_probs=107.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
++|+|+||||||||+++|+|..++ .+|+|.++|+++.. ...++.++|++|++.+++.+||+||
T Consensus 14 ~~i~G~nGsGKStLl~~l~g~~~~--~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~------------ 79 (137)
T PF00005_consen 14 VAIVGPNGSGKSTLLKALAGLLPP--DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN------------ 79 (137)
T ss_dssp EEEEESTTSSHHHHHHHHTTSSHE--SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH------------
T ss_pred EEEEccCCCccccceeeecccccc--cccccccccccccccccccccccccccccccccccccccccc------------
Confidence 489999999999999999999875 57999999999865 3456779999999999999999998
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 007474 78 VSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTS 140 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPts 140 (602)
..+++++++++.+++.+..++.++... +.||||||||++||++|+.+|++++|||||+
T Consensus 80 ----~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ----ESDERIEEVLKKLGLEDLLDRKIGQRA-SSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ----HHHHHHHHHHHHTTHGGGTGSBGTSCG-GGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ----ccccccccccccccccccccccccccc-chhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 345678999999999998888885433 6799999999999999999999999999996
No 369
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=1e-24 Score=256.85 Aligned_cols=172 Identities=30% Similarity=0.503 Sum_probs=148.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
+||+||-|||||+||.+|.|.++ ..+|+|.++|. ++||+|++.+++. |||||+.|+..+
T Consensus 550 vaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~gs----------iaYv~Q~pWI~ng-TvreNILFG~~~-------- 608 (1381)
T KOG0054|consen 550 VAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNGS----------VAYVPQQPWIQNG-TVRENILFGSPY-------- 608 (1381)
T ss_pred EEEECCCCCCHHHHHHHHhcCcc--cccceEEEcCe----------EEEeccccHhhCC-cHHHhhhcCccc--------
Confidence 58999999999999999999988 45799999985 7999999998876 999999997432
Q ss_pred HHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 007474 81 KRKRERVEALIDQLGLRS-------AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKV 153 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (602)
.++|.+++++...|++ .-.|.||++.. .||||||||+++|||+-.|++|++||.|.|.+|++..+++.+.
T Consensus 609 --d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi-nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ 685 (1381)
T KOG0054|consen 609 --DEERYDKVIKACALKKDLEILPFGDLTEIGERGI-NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEE 685 (1381)
T ss_pred --cHHHHHHHHHHccCHhHHhhcCCCCcceecCCcc-CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHH
Confidence 3457777777766653 34577776544 5999999999999999999999999999999999999999986
Q ss_pred HHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 154 LGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 154 l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.-+-.-+++|+|++|||. +..+.+|.|++|++|+++..|+.++
T Consensus 686 ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~e 728 (1381)
T KOG0054|consen 686 CIRGLLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEE 728 (1381)
T ss_pred HHHhhhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHH
Confidence 655445689999999986 4789999999999999999999887
No 370
>PLN03073 ABC transporter F family; Provisional
Probab=99.94 E-value=4.4e-27 Score=268.99 Aligned_cols=184 Identities=22% Similarity=0.241 Sum_probs=127.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCC-CCceeEEEECCEecccc-----------------cccceEEEEccCCcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEK-ESLKGTVTLNGAVLESR-----------------LLKIISAYVMQDELLFPMLTV 62 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~-~~~~G~i~~~g~~~~~~-----------------~~~~~~~yv~Q~~~l~~~lTV 62 (602)
+||+|||||||||||++|+|+... .+.+|+|.+.++..... ..++.++|++|++.+... ++
T Consensus 206 ~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~ 284 (718)
T PLN03073 206 YGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TE 284 (718)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-cc
Confidence 589999999999999999997421 13457776544321100 001224555554332111 11
Q ss_pred HHHHHHHHHhcCCCCCCHH-------------------HHHHHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHHH
Q 007474 63 EETLMFSAECRLPRSVSKK-------------------RKRERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVSI 122 (602)
Q Consensus 63 ~e~l~f~~~~~~~~~~~~~-------------------~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~i 122 (602)
.++... ... ...++. ..++++.++++.+|+. +..++.++ .|||||||||+|
T Consensus 285 ~~~~~~-~~~---~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~-----~LSgG~k~rv~L 355 (718)
T PLN03073 285 TGKGKG-ANK---DGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATK-----TFSGGWRMRIAL 355 (718)
T ss_pred cccccc-ccc---cccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchh-----hCCHHHHHHHHH
Confidence 111100 000 001111 2345677788888885 34555555 499999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCcee-ecCCccc
Q 007474 123 GIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTV-YSGTPAT 198 (602)
Q Consensus 123 a~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~ 198 (602)
|++|+.+|++|||||||++||+.++..+.+.|+++ +.|||+++|+.. .+.+.||++++|++|+++ |.|+.++
T Consensus 356 A~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~~-~l~~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 356 ARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHARE-FLNTVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 99999999999999999999999999999999886 689999999976 588899999999999996 6676543
No 371
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=7.4e-27 Score=236.82 Aligned_cols=176 Identities=22% Similarity=0.295 Sum_probs=133.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCE-eccc-----ccccceEEEEccCC---------cCCCCCCHHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGA-VLES-----RLLKIISAYVMQDE---------LLFPMLTVEET 65 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~-~~~~-----~~~~~~~~yv~Q~~---------~l~~~lTV~e~ 65 (602)
++|+||||||||||+++|++.+.+. ..|++...|. ++-. ......+++++|++ .+.|.+||.++
T Consensus 28 ~~IvG~NGsGKStll~Ai~~ll~~~-~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~ 106 (251)
T cd03273 28 NAITGLNGSGKSNILDAICFVLGIT-NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVTRQ 106 (251)
T ss_pred EEEECCCCCCHHHHHHHHHHHhccc-ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEEEE
Confidence 4899999999999999999998643 2367777765 3211 11233678999984 34678899998
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC--------------------cccccccCCCCCCCCChHHHHHHHHHHH
Q 007474 66 LMFSAECRLPRSVSKKRKRERVEALIDQLGLR--------------------SAAKTFIGDEQHRGVSGGERRRVSIGID 125 (602)
Q Consensus 66 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--------------------~~~~~~vg~~~~~~LSgGerqRv~ia~~ 125 (602)
+......+.... .+....+++.++++.+|+. +..++ .++.||||||||++||++
T Consensus 107 I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~-----~~~~lS~G~~qr~~la~a 180 (251)
T cd03273 107 IVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKE-----SLTELSGGQRSLVALSLI 180 (251)
T ss_pred EEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcc-----cccccCHHHHHHHHHHHH
Confidence 865432111000 1233457899999999986 22233 345699999999999999
Q ss_pred Hh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhc
Q 007474 126 II----HDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLS 186 (602)
Q Consensus 126 L~----~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 186 (602)
|+ .+|+++++||||+|||+..+..+.+.|++++ +|.+||+++|++ ++.+.+|+++-+.
T Consensus 181 l~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 181 LALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 98 5789999999999999999999999999985 488999999994 5888999987664
No 372
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=2.9e-26 Score=231.20 Aligned_cols=173 Identities=14% Similarity=0.287 Sum_probs=121.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCC----------------CCCCcee--------EEEECCEe----cc--cccccceEEEE
Q 007474 1 MAILGASGAGKSTLIDALAGRI----------------EKESLKG--------TVTLNGAV----LE--SRLLKIISAYV 50 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~----------------~~~~~~G--------~i~~~g~~----~~--~~~~~~~~~yv 50 (602)
++|+||||||||||+++|++.+ .++ +| +|.+++.+ .. +...++.++|+
T Consensus 26 ~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~--~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~ 103 (243)
T cd03272 26 NVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEG--SGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTIGLK 103 (243)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCC--CCCCCceEEEEEEEEcCCCccCCCCCEEEEEEEEECC
Confidence 4799999999999999998432 221 23 55555531 11 12345668999
Q ss_pred ccCCcCCC-CCCHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhh
Q 007474 51 MQDELLFP-MLTVEETLMFSAECRLPRSVSK-KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIH 128 (602)
Q Consensus 51 ~Q~~~l~~-~lTV~e~l~f~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~ 128 (602)
+|+..+++ ..|..|...+...+..+..... .....++.+ .+++.+..+..+ +.||||||||++||++|+.
T Consensus 104 ~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~---l~~l~~~~~~~~-----~~lS~G~~~r~~la~~l~~ 175 (243)
T cd03272 104 KDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINS---LTNMKQDEQQEM-----QQLSGGQKSLVALALIFAI 175 (243)
T ss_pred CCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHH---hhhccccccccc-----cccCHHHHHHHHHHHHHHH
Confidence 98877776 4677776666554432211000 001123333 344444444444 4599999999999999974
Q ss_pred ----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhc
Q 007474 129 ----DPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLS 186 (602)
Q Consensus 129 ----~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 186 (602)
+|+++++||||+|||+.++..+.+.|+++++ +++||+++|++ ++.+.+|++++|.
T Consensus 176 ~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 176 QKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred hccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 5899999999999999999999999999865 78888888885 4789999999885
No 373
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.93 E-value=2.8e-25 Score=238.70 Aligned_cols=186 Identities=27% Similarity=0.483 Sum_probs=158.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc----cccceEEEEccC---CcCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR----LLKIISAYVMQD---ELLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~----~~~~~~~yv~Q~---~~l~~~lTV~e~l~f~~~~~ 73 (602)
++|-|-=|||+|-|+++|.|..++ .+|+|.+||+++... ..+..++||+.| +.++..++|+||+.++..-+
T Consensus 288 lGiaGLvGaGRTEl~~~lfG~~~~--~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~ 365 (500)
T COG1129 288 LGIAGLVGAGRTELARALFGARPA--SSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRR 365 (500)
T ss_pred EEEeccccCCHHHHHHHHhCCCcC--CCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhh
Confidence 478899999999999999997653 469999999988542 345578999987 46899999999999883222
Q ss_pred CC-C-CCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 74 LP-R-SVSKKRKRERVEALIDQLGLRSA-AKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 74 ~~-~-~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
.. . -+.+...++.+++..+.|++... .++.++ .||||.||||.||+.|..+|++|||||||.|.|..++.+|
T Consensus 366 ~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~-----~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eI 440 (500)
T COG1129 366 FSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIG-----TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEI 440 (500)
T ss_pred hccccccChHHHHHHHHHHHHhcCcccCCccchhh-----cCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHH
Confidence 21 1 35667777889999999998643 345554 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecC
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSG 194 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 194 (602)
.++|++++++|++||++|.+.. |+..+||||++|++|+++..=
T Consensus 441 y~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~Gri~~e~ 483 (500)
T COG1129 441 YRLIRELAAEGKAILMISSELP-ELLGLSDRILVMREGRIVGEL 483 (500)
T ss_pred HHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEECCEEEEEe
Confidence 9999999999999999999986 899999999999999998743
No 374
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1e-25 Score=206.30 Aligned_cols=177 Identities=26% Similarity=0.384 Sum_probs=144.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCE--ecc-----c----ccccceEEEEccCCcCCCCCCHHHHHHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGA--VLE-----S----RLLKIISAYVMQDELLFPMLTVEETLMFS 69 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~--~~~-----~----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~ 69 (602)
+++=||||+||||||++|-|.+.++ +|+|.+.-. -++ + .-.++.+|||.|.-...|..+..|.++-.
T Consensus 40 vvL~G~SG~GKStllr~LYaNY~~d--~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaeP 117 (235)
T COG4778 40 VVLHGPSGSGKSTLLRSLYANYLPD--EGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEP 117 (235)
T ss_pred EEeeCCCCCcHHHHHHHHHhccCCC--CceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhH
Confidence 3678999999999999999998854 599988532 221 1 12345689999998888887777766543
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 007474 70 AECRLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFK 149 (602)
Q Consensus 70 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 149 (602)
+. .++.+.+..++++.+++.+|++.+...... +...||||||||.|||.++.+-+||+|||||+.||..++.-
T Consensus 118 ll---~~gv~~~~a~~~a~~Ll~rLnlperLW~La----PaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~v 190 (235)
T COG4778 118 LL---ARGVPREVARAKAADLLTRLNLPERLWSLA----PATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAV 190 (235)
T ss_pred HH---HcCCCHHHHHHHHHHHHHHcCCCHHHhcCC----CcccCCchheehhhhhhhhccCceEEecCCcccccccchHH
Confidence 32 236778888999999999999987665543 34799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcC
Q 007474 150 VVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSH 187 (602)
Q Consensus 150 i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 187 (602)
++++|++-+.+|..+|-+-||-+ .-...+||++-+..
T Consensus 191 Vveli~e~Ka~GaAlvGIFHDee-vre~vadR~~~~~~ 227 (235)
T COG4778 191 VVELIREAKARGAALVGIFHDEE-VREAVADRLLDVSA 227 (235)
T ss_pred HHHHHHHHHhcCceEEEeeccHH-HHHHHhhheeeccc
Confidence 99999999889999999999954 34568999887753
No 375
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.92 E-value=1.3e-25 Score=220.51 Aligned_cols=156 Identities=19% Similarity=0.303 Sum_probs=117.7
Q ss_pred CEEECCCCCcHHHHHHHHH----cCCCCCCceeEEEECCEecccccccceEEEEccCC-----cCCCCCCHHHHHHHHHH
Q 007474 1 MAILGASGAGKSTLIDALA----GRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDE-----LLFPMLTVEETLMFSAE 71 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~----G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~-----~l~~~lTV~e~l~f~~~ 71 (602)
++|+|||||||||||++|. |..++. .|.+..+...+.....+..+++++|++ .....+||.|++.+.
T Consensus 25 ~~i~G~NGsGKTTLl~ai~~~l~G~~~~~--~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~-- 100 (204)
T cd03240 25 TLIVGQNGAGKTTIIEALKYALTGELPPN--SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFC-- 100 (204)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCcc--cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceeee--
Confidence 4799999999999999995 886643 355542222222233455688999987 345556888888542
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHH------HHHHHHHhhCCcEEEEeCCCCCCCHH
Q 007474 72 CRLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRR------VSIGIDIIHDPILLFLDEPTSGLDST 145 (602)
Q Consensus 72 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR------v~ia~~L~~~p~lllLDEPtsgLD~~ 145 (602)
+.. .+++.+ +.. ++.||+||||| ++||++++.+|+++++||||++||+.
T Consensus 101 -------~~~----~~~~~~---------~~~-----~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~ 155 (204)
T cd03240 101 -------HQG----ESNWPL---------LDM-----RGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEE 155 (204)
T ss_pred -------chH----HHHHHH---------hcC-----ccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHH
Confidence 111 223333 223 34599999996 78999999999999999999999999
Q ss_pred HHH-HHHHHHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcC
Q 007474 146 SAF-KVVKVLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSH 187 (602)
Q Consensus 146 ~~~-~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~ 187 (602)
.+. .+.+.|++++++ |.+||+++|++. ..+.+|+++.|.+
T Consensus 156 ~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 156 NIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred HHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 999 999999999876 889999999975 4578999999864
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.92 E-value=7.1e-27 Score=230.66 Aligned_cols=166 Identities=20% Similarity=0.215 Sum_probs=124.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCC-----
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLP----- 75 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~----- 75 (602)
++|+||||||||||+++|.- ++|.+... ..++.+++++|+..+++.+|++|++.+.......
T Consensus 28 ~~ivGpNGaGKSTll~~i~~------------~~G~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 94 (212)
T cd03274 28 SAIVGPNGSGKSNVIDSMLF------------VFGFRASK-MRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKS 94 (212)
T ss_pred EEEECCCCCCHHHHHHHHHH------------HhccCHHH-hhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHH
Confidence 48999999999999999972 22322211 1124578999999899999999988765543100
Q ss_pred CCCCHHHHHH--HHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHH
Q 007474 76 RSVSKKRKRE--RVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIH----DPILLFLDEPTSGLDSTSAFK 149 (602)
Q Consensus 76 ~~~~~~~~~~--~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~----~p~lllLDEPtsgLD~~~~~~ 149 (602)
.+...++... ..+++++.++|.+..++.++ .+|+|||||++||++++. +|+++++||||+|||+.++..
T Consensus 95 ~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~-----~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~ 169 (212)
T cd03274 95 KGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS-----NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSI 169 (212)
T ss_pred CCcCCCCCceEEcCCcEEEeeccccccccchh-----hcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHH
Confidence 0111111111 12566778888877777765 499999999999999974 479999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcC
Q 007474 150 VVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSH 187 (602)
Q Consensus 150 i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 187 (602)
+.+.|+++++ +.|+|+++|++ ++.++||++++|..
T Consensus 170 l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 170 VANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 9999999864 67888888985 58899999999864
No 377
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=4.7e-25 Score=259.68 Aligned_cols=181 Identities=24% Similarity=0.350 Sum_probs=150.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~ 77 (602)
+||+|..|||||||.++|-.+..+ .+|+|.+||.++.+ ...|++++.+|||+.+|.. |||.||.=.. .
T Consensus 1169 VGIVGRTGaGKSSL~~aLFRl~e~--~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~------e 1239 (1381)
T KOG0054|consen 1169 VGIVGRTGAGKSSLILALFRLVEP--AEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFD------E 1239 (1381)
T ss_pred EEEeCCCCCCHHHHHHHHHHhcCc--cCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccCccc------c
Confidence 589999999999999999999875 46999999999876 3578889999999999998 9999996221 2
Q ss_pred CCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRS-------AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV 150 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (602)
.+++ .+-++|+..+|.+ ..|+.|.+ ....+|-||||-+++||||+++++||+|||.|++.|+++-..|
T Consensus 1240 ~sD~----~IW~ALe~~~Lk~~v~~~p~~Ld~~v~e-gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lI 1314 (1381)
T KOG0054|consen 1240 YSDD----EIWEALERCQLKDVVSSLPGGLDSEVSE-GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI 1314 (1381)
T ss_pred cCHH----HHHHHHHHhChHHHHhhCCcCCCceecC-CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHH
Confidence 2333 3444444444432 35566643 4457999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 151 VKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 151 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.++||+-= +++||+.+.|.... +.+ +|||+||++|+++++|+|.+
T Consensus 1315 Q~tIR~~F-~dcTVltIAHRl~T-Vmd-~DrVlVld~G~v~EfdsP~~ 1359 (1381)
T KOG0054|consen 1315 QKTIREEF-KDCTVLTIAHRLNT-VMD-SDRVLVLDAGRVVEFDSPAE 1359 (1381)
T ss_pred HHHHHHHh-cCCeEEEEeeccch-hhh-cCeEEEeeCCeEeecCChHH
Confidence 99999853 47999999999974 554 89999999999999999987
No 378
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.92 E-value=2.9e-25 Score=219.62 Aligned_cols=168 Identities=21% Similarity=0.160 Sum_probs=116.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECC--EecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNG--AVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g--~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
++|+|||||||||||++|++.+.. ...+....+. ..+.....+..+++++|++.... ++.+.. ..
T Consensus 31 ~~i~G~NGsGKSTll~~i~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~~----------gl 97 (213)
T cd03279 31 FLICGPTGAGKSTILDAITYALYG-KTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERSR----------GL 97 (213)
T ss_pred EEEECCCCCCHHHHHHHheeeEec-CccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEec----------CC
Confidence 479999999999999999965421 1123333221 11112233445788888763211 121111 22
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhh----------CCcEEEEeCCCCCCCHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIH----------DPILLFLDEPTSGLDSTSAF 148 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~----------~p~lllLDEPtsgLD~~~~~ 148 (602)
+.++..+.+ .++..++.+..++.++ .||||||||++||++|+. +|++++|||||+|||+.++.
T Consensus 98 ~~~~~~~~~--~l~~g~l~~~l~~~~~-----~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~ 170 (213)
T cd03279 98 DYDQFTRIV--LLPQGEFDRFLARPVS-----TLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALE 170 (213)
T ss_pred CHHHHHHhh--hhhhcchHHHhcCCcc-----ccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHH
Confidence 222222111 2344445555555444 599999999999999985 57899999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCc
Q 007474 149 KVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQ 189 (602)
Q Consensus 149 ~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 189 (602)
.+.+.|++++++|.|||+++|+++ .+...+|+++++++|.
T Consensus 171 ~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 171 AVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 999999999877999999999986 5788899999999874
No 379
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.91 E-value=4.6e-24 Score=234.65 Aligned_cols=166 Identities=30% Similarity=0.426 Sum_probs=136.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCC-cCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDE-LLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~-~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
+||+||||+|||||||+|+|...+. +|+|.+.-. -.+||..|+. .+.+..|+.|++.-.. |
T Consensus 351 iaiiG~NG~GKSTLlk~l~g~~~~~--~G~v~~g~~--------v~igyf~Q~~~~l~~~~t~~d~l~~~~----~---- 412 (530)
T COG0488 351 IAIVGPNGAGKSTLLKLLAGELGPL--SGTVKVGET--------VKIGYFDQHRDELDPDKTVLEELSEGF----P---- 412 (530)
T ss_pred EEEECCCCCCHHHHHHHHhhhcccC--CceEEeCCc--------eEEEEEEehhhhcCccCcHHHHHHhhC----c----
Confidence 5899999999999999999998754 699987521 2379999985 5558889999886321 1
Q ss_pred HHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 80 KKRKRERVEALIDQLGLRSA-AKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
...+..+...|..+++... ..++|+ .||||||.||.+|+.++.+|.+|+|||||+.||..+...+.+.|++.
T Consensus 413 -~~~e~~~r~~L~~f~F~~~~~~~~v~-----~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f- 485 (530)
T COG0488 413 -DGDEQEVRAYLGRFGFTGEDQEKPVG-----VLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF- 485 (530)
T ss_pred -cccHHHHHHHHHHcCCChHHHhCchh-----hcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-
Confidence 1116788899999999753 445555 59999999999999999999999999999999999999999999875
Q ss_pred hcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeec-CC
Q 007474 159 KSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYS-GT 195 (602)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~-G~ 195 (602)
..|||++|||.. -+-..+++++.+.+ ++..+ |.
T Consensus 486 --~Gtvl~VSHDr~-Fl~~va~~i~~~~~-~~~~~~g~ 519 (530)
T COG0488 486 --EGTVLLVSHDRY-FLDRVATRIWLVED-KVEEFEGG 519 (530)
T ss_pred --CCeEEEEeCCHH-HHHhhcceEEEEcC-ceeEcCCC
Confidence 479999999976 58889999999988 55443 54
No 380
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.89 E-value=1.2e-22 Score=245.30 Aligned_cols=135 Identities=21% Similarity=0.346 Sum_probs=112.4
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCChHHHHHHHHHHHHh---hCCc
Q 007474 56 LFPMLTVEETLMFSAECRLPRSVSKKRKRERVEALIDQLGLRSA-AKTFIGDEQHRGVSGGERRRVSIGIDII---HDPI 131 (602)
Q Consensus 56 l~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~---~~p~ 131 (602)
.+...||.|+|.++..-........++..+++ ++++.+||.+. .++.+. .||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~-----tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLS-----SLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccc-----cCCHHHHHHHHHHHHHhhcCCCCC
Confidence 56678999999887652211112234555666 58899999875 566655 59999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhc------CCceeecCCccc
Q 007474 132 LLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLS------HGQTVYSGTPAT 198 (602)
Q Consensus 132 lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~------~G~iv~~G~~~~ 198 (602)
+++|||||+|||+.++..+++.|++++++|.|||+++|++. .+ +.+|++++|. +|+++..|++++
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 99999999999999999999999999988999999999986 45 8999999996 789999998876
No 381
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.88 E-value=2.7e-24 Score=209.98 Aligned_cols=208 Identities=19% Similarity=0.327 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHHhhcChHHH-HHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHH-hHHHHHHHhh
Q 007474 296 TEMLFLSKRSNTNSRRMPELF-GTRLGAQLVIACVLATLYWQLDDSPKGTRLRLAFVAFAMTTIFYNCA-REIPALLQER 373 (602)
Q Consensus 296 ~q~~~L~~R~~~~~~Rd~~~~-~~r~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~~f~~~~~~~~~~~-~~i~~~~~er 373 (602)
+|++.+++|+++..+|||.+. ..+++..+++++++|.+|.+++++.++. ++.+++++.+...++... +.......||
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 699999999999999999888 9999999999999999999999555555 777877777766664433 4447788999
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007474 374 NIFIRETSYNAYRVSSYVLAHALASIPSMITLSLVFALTTFWAVGLAGGFSGFLFFFITMFASYWAGTSFMAFVAGFIPN 453 (602)
Q Consensus 374 ~v~~rE~~~~~Y~~~~y~~a~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~i~~~~~~ 453 (602)
..+.||+.++.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+ +++.+++.+++..+++.++|.++++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 157 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS 157 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999999999999887 67777788888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCcccchhhhhccChhHHHHHHHHhhhh
Q 007474 454 IQIGFTIVVAILGLSLLFCGFYISHDEIPSYWIWFHYVSLVKYPFQGALQNEY 506 (602)
Q Consensus 454 ~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~~~l~~nef 506 (602)
...+..+.+.+..+++++||.++|.+++|+|++|+.|+||++|++|++..++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 158 FRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999886
No 382
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=2.4e-23 Score=210.63 Aligned_cols=177 Identities=19% Similarity=0.243 Sum_probs=116.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEe--ccc--------ccccceEEEEccCCcC-CCCCCHHHHHHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAV--LES--------RLLKIISAYVMQDELL-FPMLTVEETLMFS 69 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~--~~~--------~~~~~~~~yv~Q~~~l-~~~lTV~e~l~f~ 69 (602)
++|+|||||||||||++|++.+.+. .|++..++.. +.. ....-.+.|..|++.. .-..++++...
T Consensus 25 ~~i~G~NGsGKStll~ai~~~l~~~--~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~-- 100 (247)
T cd03275 25 TCIIGPNGSGKSNLMDAISFVLGEK--SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSS-- 100 (247)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC--cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCce--
Confidence 4799999999999999999987532 3555443311 000 0111123344443211 11111111100
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc---------cCC--------CCCCCCChHHHHHHHHHHHHhhC---
Q 007474 70 AECRLPRSVSKKRKRERVEALIDQLGLRSAAKTF---------IGD--------EQHRGVSGGERRRVSIGIDIIHD--- 129 (602)
Q Consensus 70 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~---------vg~--------~~~~~LSgGerqRv~ia~~L~~~--- 129 (602)
..+... +....+.++++++.+|+....... +.+ ..+..||||||||++||++++.+
T Consensus 101 -~~~ing---k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~ 176 (247)
T cd03275 101 -SYRING---KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQ 176 (247)
T ss_pred -EEEECC---EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccC
Confidence 001111 112234667889999986432111 111 12367999999999999999975
Q ss_pred -CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcC
Q 007474 130 -PILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSH 187 (602)
Q Consensus 130 -p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 187 (602)
|++++|||||+|||+..+..+.+.|++++++|.+||+++|++ ++.+.+|++++|.+
T Consensus 177 ~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 177 PAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence 899999999999999999999999999987799999999995 46789999999864
No 383
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=1.2e-22 Score=198.39 Aligned_cols=155 Identities=18% Similarity=0.200 Sum_probs=111.6
Q ss_pred EEECCCCCcHHHHHHHHHcCCCCCCceeEEEE--CCEecc----cccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCC
Q 007474 2 AILGASGAGKSTLIDALAGRIEKESLKGTVTL--NGAVLE----SRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLP 75 (602)
Q Consensus 2 ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~--~g~~~~----~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~ 75 (602)
+|+|||||||||||.+|..... |+... .|.... .......+..++|+..+.++
T Consensus 25 ~i~G~NGsGKStll~ai~~~l~-----~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~---------------- 83 (198)
T cd03276 25 FIVGNNGSGKSAILTALTIGLG-----GKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN---------------- 83 (198)
T ss_pred EEECCCCCcHHHHHHHHHHHhc-----CCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCC----------------
Confidence 7999999999999999974432 21111 122111 11112346777777655441
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHH----hhCCcEEEEeCCCCCCCHHHHHHHH
Q 007474 76 RSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDI----IHDPILLFLDEPTSGLDSTSAFKVV 151 (602)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L----~~~p~lllLDEPtsgLD~~~~~~i~ 151 (602)
. .....+++++++++. .+..++.++ .||+|||||++||+++ +.+|++++|||||+|||..++..+.
T Consensus 84 -~-~~~~~~~~~~~~l~~---~~~~~~~~~-----~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~ 153 (198)
T cd03276 84 -P-LCVLSQDMARSFLTS---NKAAVRDVK-----TLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKIST 153 (198)
T ss_pred -c-CCHHHHHHHHHHhcc---ccccCCccc-----ccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHH
Confidence 0 112234577777776 555565555 5999999999999999 5899999999999999999999999
Q ss_pred HHHHHHHhc---CcEEEEEEcCCcHHHHHHhhHHhhhcCCc
Q 007474 152 KVLGEIAKS---GSVVIMSIHQPSYRIFSLLNRLIFLSHGQ 189 (602)
Q Consensus 152 ~~l~~l~~~---g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 189 (602)
+.|++++++ ++||++++|+++ ++.++ |+|.+|..++
T Consensus 154 ~~l~~~~~~~~~~~~iii~th~~~-~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 154 DLLVKEAKKQPGRQFIFITPQDIS-GLASS-DDVKVFRMKD 192 (198)
T ss_pred HHHHHHHhcCCCcEEEEEECCccc-ccccc-cceeEEEecC
Confidence 999998653 358999999997 46654 9999998754
No 384
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.87 E-value=9e-23 Score=208.48 Aligned_cols=174 Identities=23% Similarity=0.323 Sum_probs=141.6
Q ss_pred EEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc---cccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCC
Q 007474 2 AILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR---LLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 2 ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~---~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
-|+|.||||||||++.|.|+.+|. +|+|++||+|++.+ .+|+..+-|+.|-++|+.+=-.|+
T Consensus 353 FliG~NGsGKST~~~LLtGL~~Pq--sG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~------------- 417 (546)
T COG4615 353 FLIGGNGSGKSTLAMLLTGLYQPQ--SGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEG------------- 417 (546)
T ss_pred EEECCCCCcHHHHHHHHhcccCCC--CCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCcc-------------
Confidence 589999999999999999999865 59999999999764 466666667777777775321111
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH-H
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE-I 157 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~-l 157 (602)
....+.++..++++.|.|.-.-.-|+-..-.||.|||||+++-.||+-+-+|+++||=-+.-||.-++.+.+.+-- +
T Consensus 418 --~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~L 495 (546)
T COG4615 418 --KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLL 495 (546)
T ss_pred --CCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHH
Confidence 1234578889999998875433333333456999999999999999999999999999999999999999986654 5
Q ss_pred HhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecC
Q 007474 158 AKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSG 194 (602)
Q Consensus 158 ~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 194 (602)
.++|+||+.++||.. -|.++||++.+++|++++.-
T Consensus 496 K~qGKTI~aIsHDd~--YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 496 KEQGKTIFAISHDDH--YFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHhCCeEEEEecCch--hhhhHHHHHHHhcCceeecc
Confidence 668999999999965 69999999999999998754
No 385
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.87 E-value=9.1e-22 Score=228.87 Aligned_cols=124 Identities=31% Similarity=0.412 Sum_probs=106.1
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCChHHHHHHHHHHHHhhCC---cEEE
Q 007474 59 MLTVEETLMFSAECRLPRSVSKKRKRERVEALIDQLGLRS-AAKTFIGDEQHRGVSGGERRRVSIGIDIIHDP---ILLF 134 (602)
Q Consensus 59 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p---~lll 134 (602)
.+||.|++.|...+. ...+..+.++.+||.+ ..+..+. .||||||||+.||++|+.+| ++++
T Consensus 791 ~ltv~E~l~~f~~~~---------~i~~~l~~L~~vgL~~l~l~~~~~-----tLSgGEkQRl~LAraL~~~p~~~~llI 856 (943)
T PRK00349 791 DMTVEEALEFFEAIP---------KIARKLQTLVDVGLGYIKLGQPAT-----TLSGGEAQRVKLAKELSKRSTGKTLYI 856 (943)
T ss_pred cCcHHHHHHHHHhch---------hhhHHHHHHHHCCCCcccccCCcc-----cCCHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 378999998865432 1124467899999986 3555554 59999999999999999999 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhh------cCCceeecCCccc
Q 007474 135 LDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFL------SHGQTVYSGTPAT 198 (602)
Q Consensus 135 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~ 198 (602)
|||||+|||+.++..+++.|+++.++|.|||+++|++. .+ +.+|+++.| ++|++++.|++++
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~e 924 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEE 924 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHH
Confidence 99999999999999999999999888999999999986 34 689999999 6899999998776
No 386
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.86 E-value=1.8e-21 Score=205.39 Aligned_cols=190 Identities=25% Similarity=0.417 Sum_probs=161.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEec----ccc-cccceEEEEccCC---cCCCCCCHHHHHHHHHHh
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVL----ESR-LLKIISAYVMQDE---LLFPMLTVEETLMFSAEC 72 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~----~~~-~~~~~~~yv~Q~~---~l~~~lTV~e~l~f~~~~ 72 (602)
++|.|-.|-|-+.|+.+|+|+.++.. |+|.++|+++ +.. ..+..++|||+|. .+.+.+|+.||+.+...-
T Consensus 287 vGIAGV~GNGQ~eL~eaisGlr~~~~--G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~ 364 (501)
T COG3845 287 VGIAGVAGNGQSELVEAISGLRKPAS--GRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHD 364 (501)
T ss_pred EEEEecCCCCHHHHHHHHhCCCccCC--ceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhcc
Confidence 48999999999999999999986543 9999999996 222 2344589999985 578999999999876543
Q ss_pred cC----CCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 007474 73 RL----PRSVSKKRKRERVEALIDQLGLRSA-AKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSA 147 (602)
Q Consensus 73 ~~----~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~ 147 (602)
+. ..-+...+.++...++++++++... .++ ..+.||||++||+-+||+|..+|++|+..+||.|||..+.
T Consensus 365 ~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~-----~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~ 439 (501)
T COG3845 365 KKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDA-----PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAI 439 (501)
T ss_pred ccccccccccCHHHHHHHHHHHHHHcCccCCCCCc-----chhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHH
Confidence 21 1125667788899999999998732 222 2456999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 148 FKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 148 ~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
..+.+.|.+.+++|+.|++++.+.+ |+++++|||.+|.+|+++...++++
T Consensus 440 ~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 440 EFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred HHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeCCceeccccccc
Confidence 9999999999999999999999987 8999999999999999998877764
No 387
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.86 E-value=1.6e-21 Score=213.64 Aligned_cols=165 Identities=28% Similarity=0.432 Sum_probs=131.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
+.|.||||||||||+|+|+|+-+-+. |+|..- ....+-|+||.+.+... |.+|.+.+... .+
T Consensus 422 llI~G~SG~GKTsLlRaiaGLWP~g~--G~I~~P--------~~~~~lflpQ~PY~p~G-tLre~l~YP~~------~~- 483 (604)
T COG4178 422 LLITGESGAGKTSLLRALAGLWPWGS--GRISMP--------ADSALLFLPQRPYLPQG-TLREALCYPNA------AP- 483 (604)
T ss_pred EEEECCCCCCHHHHHHHHhccCccCC--CceecC--------CCCceEEecCCCCCCCc-cHHHHHhCCCC------CC-
Confidence 36899999999999999999987544 777643 11235799999998777 99999876322 11
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCC-CCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGD-EQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK 159 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~-~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~ 159 (602)
+-.++.+.++|.++||.+..+..=+. +.-+.||+|||||+++||.|+++|++++|||.|++||+.+...+.+.+++-.
T Consensus 484 ~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l- 562 (604)
T COG4178 484 DFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL- 562 (604)
T ss_pred CCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-
Confidence 13456788999999999877654322 2446799999999999999999999999999999999999999999998732
Q ss_pred cCcEEEEEEcCCcHHHHHHhhHHhhhc
Q 007474 160 SGSVVIMSIHQPSYRIFSLLNRLIFLS 186 (602)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~~L~ 186 (602)
.+.|||-+.|++. +..+.++.+-+.
T Consensus 563 p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 563 PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred CCCEEEEeccchh--hHHHHhhheeec
Confidence 4799999999985 677777766554
No 388
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.86 E-value=1.3e-21 Score=207.25 Aligned_cols=169 Identities=25% Similarity=0.372 Sum_probs=131.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccC--CcCCCCCCHHHHHHHHHHhcCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQD--ELLFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~--~~l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
+|++||||+|||||||++.|.+.|. .|.|.-.-+. .+++-.|+ +.+--+.++-|++.=. .
T Consensus 419 vAlVGPNG~GKsTLlKl~~gdl~p~--~G~vs~~~H~--------~~~~y~Qh~~e~ldl~~s~le~~~~~--------~ 480 (614)
T KOG0927|consen 419 VALVGPNGAGKSTLLKLITGDLQPT--IGMVSRHSHN--------KLPRYNQHLAEQLDLDKSSLEFMMPK--------F 480 (614)
T ss_pred eeEecCCCCchhhhHHHHhhccccc--cccccccccc--------cchhhhhhhHhhcCcchhHHHHHHHh--------c
Confidence 5899999999999999999999864 5887643221 13344454 3444556777776421 2
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
++....+.+..+|.++||+...++. ..+.||+|||+||..|+.++.+|.+|+|||||+|||..+...+-+.|.++
T Consensus 481 ~~~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~- 555 (614)
T KOG0927|consen 481 PDEKELEEMRSILGRFGLTGDAQVV----PMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF- 555 (614)
T ss_pred cccchHHHHHHHHHHhCCCcccccc----chhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc-
Confidence 2234567889999999998544332 24569999999999999999999999999999999999999988888765
Q ss_pred hcCcEEEEEEcCCcHHHHHHhhHHhhhcCCce-eecCC
Q 007474 159 KSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQT-VYSGT 195 (602)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i-v~~G~ 195 (602)
..+||.++||.. -|-+.++++.+..+|.+ .+.|+
T Consensus 556 --~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G~ 590 (614)
T KOG0927|consen 556 --PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWDGD 590 (614)
T ss_pred --CCceeeeechhh-HHHHHHHHhHhhccCceeecCcc
Confidence 468999999987 59999999999998765 45554
No 389
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.83 E-value=2.8e-20 Score=216.16 Aligned_cols=124 Identities=29% Similarity=0.389 Sum_probs=104.1
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCChHHHHHHHHHHHHhh---CCcEEE
Q 007474 59 MLTVEETLMFSAECRLPRSVSKKRKRERVEALIDQLGLRSA-AKTFIGDEQHRGVSGGERRRVSIGIDIIH---DPILLF 134 (602)
Q Consensus 59 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~---~p~lll 134 (602)
++||.|.+.|...+. ...+..++++.+||... .++.+. .|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---------~i~~~l~~L~~~gL~~l~l~~~~~-----tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---------SISRKLQTLCDVGLGYIKLGQPAT-----TLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---------chhHHHHHHHHcCCCchhhcCccc-----cCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 578888888865432 11245678999999753 455444 599999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhh------cCCceeecCCccc
Q 007474 135 LDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFL------SHGQTVYSGTPAT 198 (602)
Q Consensus 135 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~ 198 (602)
|||||+|||+.++..+.+.|+++.++|.|||+++|++. .+ +.+|+++.| ++|++++.|++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~ 922 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEE 922 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHH
Confidence 99999999999999999999999988999999999986 34 679999999 7899999998765
No 390
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.83 E-value=2.7e-20 Score=193.59 Aligned_cols=160 Identities=26% Similarity=0.344 Sum_probs=125.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++++||||-||||+.++|+|.++|. +|+ .. .-.++|=||--.--.+.||++-|.-...-+..
T Consensus 370 igilGpNgiGKTTFvk~LAG~ikPd--eg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~----- 431 (591)
T COG1245 370 IGILGPNGIGKTTFVKLLAGVIKPD--EGS----EE-------DLKVSYKPQYISPDYDGTVEDLLRSAIRSAFG----- 431 (591)
T ss_pred EEEECCCCcchHHHHHHHhccccCC--CCC----Cc-------cceEeecceeecCCCCCcHHHHHHHhhhhhcc-----
Confidence 4799999999999999999999864 465 11 12357777754333567999988644332111
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK- 159 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~- 159 (602)
..-.-.++++-|.|++..++.+.+ |||||.|||+||.+|..++++.+||||++-||++.+..+-+.||+...
T Consensus 432 --~s~~~~ei~~pl~l~~i~e~~v~~-----LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~ 504 (591)
T COG1245 432 --SSYFKTEIVKPLNLEDLLERPVDE-----LSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIEN 504 (591)
T ss_pred --cchhHHhhcCccchHHHHhccccc-----CCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhh
Confidence 112345788889999988888765 999999999999999999999999999999999999999999999986
Q ss_pred cCcEEEEEEcCCcHHHHHHhhHHhhhc
Q 007474 160 SGSVVIMSIHQPSYRIFSLLNRLIFLS 186 (602)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~~L~ 186 (602)
+++|.+++-||.- -+--+.||+++.+
T Consensus 505 ~~kta~vVdHDi~-~~dyvsDr~ivF~ 530 (591)
T COG1245 505 NEKTALVVDHDIY-MIDYVSDRLIVFE 530 (591)
T ss_pred cCceEEEEeccee-hhhhhhceEEEEe
Confidence 5889999999986 3555677776553
No 391
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.81 E-value=3.8e-20 Score=196.35 Aligned_cols=182 Identities=23% Similarity=0.342 Sum_probs=120.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHH---------
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAE--------- 71 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~--------- 71 (602)
.+|+|+|||||||+|++|+|+..|.+.+=.++.-.+++.+.... .+-+|.+ +.-..+..++.-++
T Consensus 104 ygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~-av~~v~~-----~~~~e~~rle~~~E~l~~~~d~~ 177 (614)
T KOG0927|consen 104 YGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQ-AVQAVVM-----ETDHERKRLEYLAEDLAQACDDK 177 (614)
T ss_pred EEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHH-HHHHHhh-----hhHHHHHHHHHHHHHHHhhccch
Confidence 38999999999999999999988755333344333333221110 0001110 00011111111000
Q ss_pred ---------hcCCCCCCHHHHHHHHHHHHHHcCC-CcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 007474 72 ---------CRLPRSVSKKRKRERVEALIDQLGL-RSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSG 141 (602)
Q Consensus 72 ---------~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsg 141 (602)
.|+ ..+..+..+.++.++|..+|- ++..++.+. ++|||+|+|+++||+|..+|++|+|||||+|
T Consensus 178 ~~~~l~~~~~r~-~~~d~~~~~~k~~~il~glgf~~~m~~k~~~-----~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnh 251 (614)
T KOG0927|consen 178 EKDELDELYERL-DEMDNDTFEAKAAKILHGLGFLSEMQDKKVK-----DLSGGWRMRAALARALFQKPDLLLLDEPTNH 251 (614)
T ss_pred hhhHHHHHHHHH-HhhCchhHHHHHHHHHHhcCCCHhHHHHHhh-----ccCchHHHHHHHHHHHhcCCCEEEecCCccC
Confidence 000 012233345566777777774 455665554 5999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCcee-ecCCcc
Q 007474 142 LDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTV-YSGTPA 197 (602)
Q Consensus 142 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~ 197 (602)
||..+..-+-+.|.+.-+ .++++++|.-+ .+-..|.+|+-|.+++.+ |.|+-+
T Consensus 252 LDleA~~wLee~L~k~d~--~~lVi~sh~QD-fln~vCT~Ii~l~~kkl~~y~Gnyd 305 (614)
T KOG0927|consen 252 LDLEAIVWLEEYLAKYDR--IILVIVSHSQD-FLNGVCTNIIHLDNKKLIYYEGNYD 305 (614)
T ss_pred CCHHHHHHHHHHHHhccC--ceEEEEecchh-hhhhHhhhhheecccceeeecCCHH
Confidence 999999999988876532 28889999865 588899999999999955 555544
No 392
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.81 E-value=2.7e-20 Score=175.99 Aligned_cols=194 Identities=22% Similarity=0.330 Sum_probs=147.0
Q ss_pred EEECCCCCcHHHHHHHHHcCCCCCC--ceeEEEECCEec---ccccccc----eEEEEccCCc--CCCCCCHHHHHHHHH
Q 007474 2 AILGASGAGKSTLIDALAGRIEKES--LKGTVTLNGAVL---ESRLLKI----ISAYVMQDEL--LFPMLTVEETLMFSA 70 (602)
Q Consensus 2 ai~GpsGaGKSTLL~~l~G~~~~~~--~~G~i~~~g~~~---~~~~~~~----~~~yv~Q~~~--l~~~lTV~e~l~f~~ 70 (602)
+++|.||||||-..|+|.|..+..- +.-...+++.++ +++..|+ .++.++|++. +-|.-+|...|.-..
T Consensus 37 GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~I 116 (330)
T COG4170 37 GLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNI 116 (330)
T ss_pred eeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhC
Confidence 7899999999999999999976321 123345566554 2333333 3578999974 556656655443222
Q ss_pred HhcC--CCCCC-HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 007474 71 ECRL--PRSVS-KKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSA 147 (602)
Q Consensus 71 ~~~~--~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~ 147 (602)
.... .+... -.-++++.-++|.++|+.+..|- -..++.+|.-||-|+|.||.|++.+|++|+.||||+.+|+.++
T Consensus 117 P~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDI--M~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq 194 (330)
T COG4170 117 PAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDI--MRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQ 194 (330)
T ss_pred ccccccchHhhhhchhHHHHHHHHHHhccccHHHH--HHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHH
Confidence 1110 00000 01245678899999999986663 3456678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 148 FKVVKVLGEIAK-SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 148 ~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.++..+|.++.+ +|.||+.++||.. .+.+.||++-||.-|+-++.++.++
T Consensus 195 ~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~VlYCGQ~~ESa~~e~ 245 (330)
T COG4170 195 AQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKINVLYCGQTVESAPSEE 245 (330)
T ss_pred HHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheEEEEecccccccchhH
Confidence 999999999986 5889999999997 5999999999999999999888766
No 393
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.80 E-value=5.7e-20 Score=181.57 Aligned_cols=81 Identities=22% Similarity=0.237 Sum_probs=68.3
Q ss_pred CCCCChHHHHHHHHHHHH----hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-C-cEEEEEEcCCcHHHHHHhh--
Q 007474 109 HRGVSGGERRRVSIGIDI----IHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKS-G-SVVIMSIHQPSYRIFSLLN-- 180 (602)
Q Consensus 109 ~~~LSgGerqRv~ia~~L----~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g-~tvi~~~H~~~~~i~~~~D-- 180 (602)
+..||||||||+.++.+| +.+|+++++||||+|||+.++..+++.|++++++ | .++|+++|+.. ++.+.+|
T Consensus 124 ~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~~~ 202 (213)
T cd03277 124 PHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHEKM 202 (213)
T ss_pred hhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccCce
Confidence 346999999998877654 4799999999999999999999999999999876 6 47999999976 4667776
Q ss_pred HHhhhcCCce
Q 007474 181 RLIFLSHGQT 190 (602)
Q Consensus 181 ~v~~L~~G~i 190 (602)
++++|++|+-
T Consensus 203 ~v~~l~~g~~ 212 (213)
T cd03277 203 TVLCVYNGPH 212 (213)
T ss_pred EEEEEecCcc
Confidence 6777787763
No 394
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=3.4e-19 Score=188.20 Aligned_cols=170 Identities=24% Similarity=0.346 Sum_probs=116.0
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCC-cCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDE-LLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~-~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
.+|+|+||+||||||++|+. |.|. +.+.. ...+ .-+++... .+..+ |.++.+.. +- ..+.
T Consensus 109 YGLvGrNG~GKsTLLRaia~--------~~v~--~f~ve-qE~~--g~~t~~~~~~l~~D-~~~~dfl~--~e---~~l~ 169 (582)
T KOG0062|consen 109 YGLVGRNGIGKSTLLRAIAN--------GQVS--GFHVE-QEVR--GDDTEALQSVLESD-TERLDFLA--EE---KELL 169 (582)
T ss_pred cceeCCCCCcHHHHHHHHHh--------cCcC--ccCch-hhee--ccchHHHhhhhhcc-HHHHHHHH--hh---hhhh
Confidence 37999999999999999996 2222 22221 1111 12343332 23333 33333321 10 0111
Q ss_pred HH-HHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 80 KK-RKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 80 ~~-~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
.. +.++..+++|..+|.++-... ...+.||||-|-|+++||||..+|+||+|||||+.||..+..-+.+.|..+
T Consensus 170 ~~~~l~ei~~~~L~glGFt~emq~----~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~- 244 (582)
T KOG0062|consen 170 AGLTLEEIYDKILAGLGFTPEMQL----QPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW- 244 (582)
T ss_pred ccchHHHHHHHHHHhCCCCHHHHh----ccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC-
Confidence 11 334455568999998764332 234569999999999999999999999999999999999999999999875
Q ss_pred hcCcEEEEEEcCCcHHHHHHhhHHhhhcCCce-eecCCcc
Q 007474 159 KSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQT-VYSGTPA 197 (602)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i-v~~G~~~ 197 (602)
+.|+|+++||-. -+-+.|..|+.+++-++ .|.|+-+
T Consensus 245 --~~T~liVSHDr~-FLn~V~tdIIH~~~~kL~~YkGN~~ 281 (582)
T KOG0062|consen 245 --KITSLIVSHDRN-FLNTVCTDIIHLENLKLDYYKGNYS 281 (582)
T ss_pred --CceEEEEeccHH-HHHHHHHHHHHHhhhhhhhhcCcHH
Confidence 489999999954 57789999999988776 4556433
No 395
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.79 E-value=1.3e-19 Score=188.44 Aligned_cols=163 Identities=28% Similarity=0.410 Sum_probs=119.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc---cc---------cc------e----EEEEccCCcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR---LL---------KI------I----SAYVMQDELLFP 58 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~---~~---------~~------~----~~yv~Q~~~l~~ 58 (602)
++|+||||-||||-+|+|+|.+.|.- |+ .++.|-... .+ ++ + .-||.--+..+-
T Consensus 103 ~GilG~NGiGKsTalkILaGel~PNL--G~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~K 178 (591)
T COG1245 103 VGILGPNGIGKSTALKILAGELKPNL--GR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVK 178 (591)
T ss_pred EEEEcCCCccHHHHHHHHhCccccCC--CC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHhc
Confidence 58999999999999999999998643 32 122111000 00 00 0 112222222222
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCC
Q 007474 59 MLTVEETLMFSAECRLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEP 138 (602)
Q Consensus 59 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEP 138 (602)
. ||.|-|.= ...+-+.+++++.|+|++..|+.+.+ |||||-||++||.+++.+++++++|||
T Consensus 179 G-~v~elLk~------------~de~g~~devve~l~L~nvl~r~v~~-----LSGGELQr~aIaa~l~rdADvY~FDEp 240 (591)
T COG1245 179 G-KVGELLKK------------VDERGKFDEVVERLGLENVLDRDVSE-----LSGGELQRVAIAAALLRDADVYFFDEP 240 (591)
T ss_pred c-hHHHHHHh------------hhhcCcHHHHHHHhcchhhhhhhhhh-----cCchHHHHHHHHHHHhccCCEEEEcCC
Confidence 2 56665431 12234688999999999999888865 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhc
Q 007474 139 TSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLS 186 (602)
Q Consensus 139 tsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 186 (602)
||-||...+....+.+|++++.+++||++-||.. -+--++|-|.++.
T Consensus 241 sSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa-vLD~lsD~vhI~Y 287 (591)
T COG1245 241 SSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA-VLDYLSDFVHILY 287 (591)
T ss_pred cccccHHHHHHHHHHHHHHhccCCeEEEEechHH-HHHHhhheeEEEe
Confidence 9999999999999999999998999999999986 2334566665554
No 396
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.78 E-value=8.4e-19 Score=168.42 Aligned_cols=74 Identities=26% Similarity=0.356 Sum_probs=68.7
Q ss_pred CChHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcC
Q 007474 112 VSGGERRRVSIGIDII----HDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSH 187 (602)
Q Consensus 112 LSgGerqRv~ia~~L~----~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 187 (602)
||+|||||++||++++ .+|+++++|||+++||+..+..+.+.|++++++|.++|+++|+++ ..+.+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999999877899999999975 5678999998865
No 397
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.77 E-value=2.2e-19 Score=175.84 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=73.2
Q ss_pred CCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCc
Q 007474 111 GVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVV-KVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQ 189 (602)
Q Consensus 111 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~-~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 189 (602)
.+|+|+||++.|+++ +.+|+++++|||++|||+..+..+. ..++++.+.|.++|+++|++ ++.+++|++..|++|+
T Consensus 91 ~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~ 167 (200)
T cd03280 91 TFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENAS 167 (200)
T ss_pred hHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEE
Confidence 499999999999987 4899999999999999999999996 57888887899999999984 5789999999999999
Q ss_pred eeecC
Q 007474 190 TVYSG 194 (602)
Q Consensus 190 iv~~G 194 (602)
+++.+
T Consensus 168 l~~~~ 172 (200)
T cd03280 168 MEFDP 172 (200)
T ss_pred EEEec
Confidence 98874
No 398
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=9.4e-19 Score=180.57 Aligned_cols=145 Identities=29% Similarity=0.399 Sum_probs=115.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCC--cCCCCCCHHHHHHHHHHhcCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDE--LLFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~--~l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
+||+||||.||||||++|.|.+.|. .|+..- ..+-.+|+..|+. .+-..-|.-|.|.-.. ++
T Consensus 616 iaIVGPNGVGKSTlLkLL~Gkl~P~--~GE~RK--------nhrL~iG~FdQh~~E~L~~Eetp~EyLqr~F------Nl 679 (807)
T KOG0066|consen 616 IAIVGPNGVGKSTLLKLLIGKLDPN--DGELRK--------NHRLRIGWFDQHANEALNGEETPVEYLQRKF------NL 679 (807)
T ss_pred eEEECCCCccHHHHHHHHhcCCCCC--cchhhc--------cceeeeechhhhhHHhhccccCHHHHHHHhc------CC
Confidence 5899999999999999999999864 476643 3455689988863 4666667777764221 22
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
+. +.....|-.+||...++|.- ++.||||||-||++|.--+..|+||||||||++||..+...+-+.|++.
T Consensus 680 py----q~ARK~LG~fGL~sHAHTik----ikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney- 750 (807)
T KOG0066|consen 680 PY----QEARKQLGTFGLASHAHTIK----IKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY- 750 (807)
T ss_pred Ch----HHHHHHhhhhhhhhccceEe----eeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc-
Confidence 22 34556788899998888752 4569999999999999999999999999999999999999999888865
Q ss_pred hcCcEEEEEEcCCc
Q 007474 159 KSGSVVIMSIHQPS 172 (602)
Q Consensus 159 ~~g~tvi~~~H~~~ 172 (602)
...||+++|+-+
T Consensus 751 --~GgVi~VsHDeR 762 (807)
T KOG0066|consen 751 --NGGVIMVSHDER 762 (807)
T ss_pred --cCcEEEEecccc
Confidence 457999999965
No 399
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=3.1e-18 Score=180.96 Aligned_cols=166 Identities=27% Similarity=0.390 Sum_probs=129.0
Q ss_pred EEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCHH
Q 007474 2 AILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSKK 81 (602)
Q Consensus 2 ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~~ 81 (602)
+++|+||+||||++|++.|-++|. +|-+.+++ |.+++|-.|...=+-.+.|.+- .+..+++ |. .
T Consensus 394 ~~vg~ng~gkst~lKi~~~~l~~~--rgi~~~~~--------r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~-pG-~--- 457 (582)
T KOG0062|consen 394 SRVGENGDGKSTLLKILKGDLTPT--RGIVGRHP--------RLRIKYFAQHHVDFLDKNVNAV-DFMEKSF-PG-K--- 457 (582)
T ss_pred heeccCchhHHHHHHHHhccCCcc--cceeeecc--------cceecchhHhhhhHHHHHhHHH-HHHHHhC-CC-C---
Confidence 689999999999999999987743 47776543 4557898897654444555543 3333333 22 2
Q ss_pred HHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 007474 82 RKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSG 161 (602)
Q Consensus 82 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g 161 (602)
.++.+++-+..+||+.-. .....++||||||=||++|.....+|.+|+|||||+.||..+-..+.+.|+.. +
T Consensus 458 -~~ee~r~hl~~~Gl~g~l----a~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~ 529 (582)
T KOG0062|consen 458 -TEEEIRRHLGSFGLSGEL----ALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---N 529 (582)
T ss_pred -CHHHHHHHHHhcCCCchh----hhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---C
Confidence 345677888999997531 12224569999999999999999999999999999999999999999888865 4
Q ss_pred cEEEEEEcCCcHHHHHHhhHHhhhcCCceee
Q 007474 162 SVVIMSIHQPSYRIFSLLNRLIFLSHGQTVY 192 (602)
Q Consensus 162 ~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 192 (602)
..||+++|+-+ -+-..|+.+++.++|++.-
T Consensus 530 GGVv~VSHd~~-fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 530 GGVVLVSHDEE-FISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CcEEEEECcHH-HHhhcCceeEEEcCCcEEe
Confidence 67999999976 5889999999999999864
No 400
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.75 E-value=3.1e-18 Score=183.10 Aligned_cols=172 Identities=20% Similarity=0.225 Sum_probs=132.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
+.|+||||||||+||++|+|+-+. .+|++.--.+.-. +.+-||||.|.+--. |.||.+.|...--- ...+
T Consensus 464 LLItG~sG~GKtSLlRvlggLWp~--~~G~l~k~~~~~~-----~~lfflPQrPYmt~G-TLRdQvIYP~~~~~--~~~~ 533 (659)
T KOG0060|consen 464 LLITGPSGCGKTSLLRVLGGLWPS--TGGKLTKPTDGGP-----KDLFFLPQRPYMTLG-TLRDQVIYPLKAED--MDSK 533 (659)
T ss_pred EEEECCCCCchhHHHHHHhccccc--CCCeEEecccCCC-----CceEEecCCCCcccc-chhheeeccCcccc--cccc
Confidence 469999999999999999999873 4588875432211 346799999987665 99999887532111 1122
Q ss_pred HHHHHHHHHHHHHcCCCcccccccC------CCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIG------DEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVL 154 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg------~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (602)
...++++.+.|+.++|.|.....=| -+.-..||+||+||++.||-+.++|++-+|||-||++|......+.+.+
T Consensus 534 ~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~ 613 (659)
T KOG0060|consen 534 SASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKC 613 (659)
T ss_pred CCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHH
Confidence 2345678888888888876644322 1233469999999999999999999999999999999999999998888
Q ss_pred HHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcC
Q 007474 155 GEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSH 187 (602)
Q Consensus 155 ~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 187 (602)
++ .|.|.|-+.|..+ ..++=|.++-|+.
T Consensus 614 r~---~giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 614 RE---MGITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred HH---cCCeEEEeccHHH--HHhhhhEEEEecC
Confidence 75 5899999999975 5666787777765
No 401
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=1.6e-18 Score=178.12 Aligned_cols=76 Identities=24% Similarity=0.343 Sum_probs=68.9
Q ss_pred CCChHHHHHHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhc
Q 007474 111 GVSGGERRRVSIGIDIIH----DPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLS 186 (602)
Q Consensus 111 ~LSgGerqRv~ia~~L~~----~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 186 (602)
.||||||||+++|++++. +|+++++||||+|||+..+..+.+.|+++.+ +.|+|+++|++. +.+.+|+++.|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999997664 9999999999999999999999999999865 789999999985 568999999998
Q ss_pred CCc
Q 007474 187 HGQ 189 (602)
Q Consensus 187 ~G~ 189 (602)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 764
No 402
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.74 E-value=8.3e-18 Score=158.85 Aligned_cols=175 Identities=26% Similarity=0.332 Sum_probs=129.5
Q ss_pred EEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc-c-------------cccceEEEEccCCcCCCCCCHHHHHH
Q 007474 2 AILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES-R-------------LLKIISAYVMQDELLFPMLTVEETLM 67 (602)
Q Consensus 2 ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~-~-------------~~~~~~~yv~Q~~~l~~~lTV~e~l~ 67 (602)
.++|.||||||||||+|+|..-... |.|.++|++.-. . .+.+..++-- +-.+-.+.++.+- .
T Consensus 44 LlVGaNGaGKtTlLKiLsGKhmv~~--~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~m-i 119 (291)
T KOG2355|consen 44 LLVGANGAGKTTLLKILSGKHMVGG--GVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHM-I 119 (291)
T ss_pred EEEecCCCchhhhHHHhcCcccccC--CeEEEcCcCccccccccccCceeEecccccccccccc-cccccccccHHHH-H
Confidence 5899999999999999999865444 899999986421 0 1222222211 2223335566553 3
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 007474 68 FSAECRLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSA 147 (602)
Q Consensus 68 f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~ 147 (602)
|+... . +. +|-+++++.|++.-. .+ ...+|-||||||.|++.|++.-++|+|||-|-.||..++
T Consensus 120 fgV~g-----~-dp---~Rre~LI~iLDIdl~-WR------mHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlAR 183 (291)
T KOG2355|consen 120 FGVGG-----D-DP---ERREKLIDILDIDLR-WR------MHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLAR 183 (291)
T ss_pred hhccC-----C-Ch---hHhhhhhhheeccce-EE------EeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHH
Confidence 44321 1 11 455677787776421 11 124999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCcc
Q 007474 148 FKVVKVLGEIAK-SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPA 197 (602)
Q Consensus 148 ~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 197 (602)
..+++.+++-.+ +|.||+..||--+ -+.....+++.+++|+++..-+..
T Consensus 184 adLLeFlkeEce~RgatIVYATHIFD-GLe~Wpthl~yi~~Gkl~~~l~~~ 233 (291)
T KOG2355|consen 184 ADLLEFLKEECEQRGATIVYATHIFD-GLETWPTHLVYIKSGKLVDNLKYQ 233 (291)
T ss_pred HHHHHHHHHHHhhcCcEEEEEeeecc-chhhcchhEEEecCCeeeeccccc
Confidence 999999999886 5999999999987 488899999999999998754433
No 403
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.74 E-value=3.2e-18 Score=162.07 Aligned_cols=74 Identities=27% Similarity=0.420 Sum_probs=67.6
Q ss_pred CChHHHHHHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcC
Q 007474 112 VSGGERRRVSIGIDIIH----DPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSH 187 (602)
Q Consensus 112 LSgGerqRv~ia~~L~~----~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 187 (602)
||+||+||+++|++|.. +|+++++|||++|+|+..+..+.+.++++.++|.++|++||+++ +.+.+|+++.|..
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~~ 155 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIKK 155 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEEE
Confidence 99999999999999997 78999999999999999999999999998766889999999975 5678999988853
No 404
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.73 E-value=2.5e-18 Score=168.08 Aligned_cols=121 Identities=20% Similarity=0.314 Sum_probs=93.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+||||||||||||+|+|... +...|.++... .+++|.+.+++.+|+.|++.+... ...
T Consensus 28 ~~ltGpNg~GKSTllr~i~~~~~-------l~~~G~~v~a~------~~~~q~~~l~~~~~~~d~l~~~~s------~~~ 88 (199)
T cd03283 28 ILITGSNMSGKSTFLRTIGVNVI-------LAQAGAPVCAS------SFELPPVKIFTSIRVSDDLRDGIS------YFY 88 (199)
T ss_pred EEEECCCCCChHHHHHHHHHHHH-------HHHcCCEEecC------ccCcccceEEEeccchhccccccC------hHH
Confidence 47999999999999999998642 12345444321 366777889999999999976432 112
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHh
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVV-KVLGEIAK 159 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~-~~l~~l~~ 159 (602)
.+ .+++.++++.+++ .+|+++++|||++|+|+..+..+. ..++++.+
T Consensus 89 ~e-~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~ 136 (199)
T cd03283 89 AE-LRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN 136 (199)
T ss_pred HH-HHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH
Confidence 22 3567888887762 689999999999999999998875 47888887
Q ss_pred cCcEEEEEEcCCc
Q 007474 160 SGSVVIMSIHQPS 172 (602)
Q Consensus 160 ~g~tvi~~~H~~~ 172 (602)
.|.++|++||+++
T Consensus 137 ~~~tiiivTH~~~ 149 (199)
T cd03283 137 KNTIGIISTHDLE 149 (199)
T ss_pred CCCEEEEEcCcHH
Confidence 8999999999975
No 405
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.73 E-value=6.7e-18 Score=196.74 Aligned_cols=134 Identities=27% Similarity=0.451 Sum_probs=109.6
Q ss_pred CCCCCHHHHHHHHHHhcCCCC---C---CHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCChHHHHHHHHHHHHhhC
Q 007474 57 FPMLTVEETLMFSAECRLPRS---V---SKKRKRERVEALIDQLGLRSA-AKTFIGDEQHRGVSGGERRRVSIGIDIIHD 129 (602)
Q Consensus 57 ~~~lTV~e~l~f~~~~~~~~~---~---~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~ 129 (602)
+..+||.|.+.|.-.+..+.. . .-++..++++ .++.+||.+. .|+.+.+ |||||||||.||++|..+
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~-----LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSG 507 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhh-----CCHHHHHHHHHHHHHhhC
Confidence 457899999998544422210 0 0013345554 7888999876 6776664 999999999999999999
Q ss_pred C--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhh------cCCceeecCCccc
Q 007474 130 P--ILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFL------SHGQTVYSGTPAT 198 (602)
Q Consensus 130 p--~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~ 198 (602)
| ++++|||||+|||+..+..+.+.|++++++|.|||+++|++. ++ ..+|++++| ++|++++.|++++
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e 582 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEE 582 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHH
Confidence 7 999999999999999999999999999988999999999986 45 569999999 8999999998776
No 406
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.72 E-value=1.2e-17 Score=194.43 Aligned_cols=134 Identities=28% Similarity=0.427 Sum_probs=106.2
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCH------HHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCChHHHHHHHHHHHHhhC
Q 007474 57 FPMLTVEETLMFSAECRLPRSVSK------KRKRERVEALIDQLGLRSA-AKTFIGDEQHRGVSGGERRRVSIGIDIIHD 129 (602)
Q Consensus 57 ~~~lTV~e~l~f~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~ 129 (602)
+..|||.|.+.|...+.++..... ++..+++ +.++.+||... .++.+. +|||||+|||.||++|+.+
T Consensus 432 ~~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~~-----tLSGGE~QRv~LA~aL~~~ 505 (924)
T TIGR00630 432 VSELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAAG-----TLSGGEAQRIRLATQIGSG 505 (924)
T ss_pred HhcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCcC-----cCCHHHHHHHHHHHHHhhC
Confidence 447899999988766532210000 1112222 33677788754 455554 5999999999999999998
Q ss_pred C--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhh------cCCceeecCCccc
Q 007474 130 P--ILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFL------SHGQTVYSGTPAT 198 (602)
Q Consensus 130 p--~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~ 198 (602)
| ++++|||||+|||+.++..+.+.|++++++|.|||+++|++. .+ ..+|++++| ++|++++.|++.+
T Consensus 506 ~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~e 580 (924)
T TIGR00630 506 LTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEE 580 (924)
T ss_pred CCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHH
Confidence 6 899999999999999999999999999988999999999986 34 589999999 8999999998766
No 407
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.67 E-value=1.6e-16 Score=175.67 Aligned_cols=125 Identities=32% Similarity=0.462 Sum_probs=104.3
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCC---cEEEE
Q 007474 59 MLTVEETLMFSAECRLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDP---ILLFL 135 (602)
Q Consensus 59 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p---~lllL 135 (602)
.|||.|...|.... .+-.+.-+.|..+||.-.. .|. ....|||||.|||-+|.+|..+. .+.+|
T Consensus 783 ~MTveEA~~FF~~~---------p~I~rkLqtL~dVGLgYi~---LGQ-patTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI---------PKIARKLQTLVDVGLGYIK---LGQ-PATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc---------hHHHHHHHHHHHcCcceEe---cCC-ccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 57888888776431 1234555677788887432 443 34469999999999999999887 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhh------cCCceeecCCccc
Q 007474 136 DEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFL------SHGQTVYSGTPAT 198 (602)
Q Consensus 136 DEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~ 198 (602)
||||+||......++++.|.+|.++|.|||++-|+.+ +...+|.|+=| ..|++|..|+|++
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLd--VIk~AD~IIDLGPeGG~~GG~iva~GTPee 916 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVASGTPEE 916 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccc--eEeecCEEEEcCCCCCCCCceEEEecCHHH
Confidence 9999999999999999999999999999999999985 88999999988 3479999999988
No 408
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.66 E-value=6.1e-17 Score=160.99 Aligned_cols=136 Identities=19% Similarity=0.201 Sum_probs=99.7
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEE-EEccCCcCCCCCCHHHHHHHHHHhcCCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISA-YVMQDELLFPMLTVEETLMFSAECRLPRSVS 79 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~-yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~ 79 (602)
++|.||||+||||||++++-. .+..++| |||.+...++
T Consensus 33 ~~l~G~n~~GKstll~~i~~~--------------------~~la~~g~~vpa~~~~~~--------------------- 71 (222)
T cd03285 33 LIITGPNMGGKSTYIRQIGVI--------------------VLMAQIGCFVPCDSADIP--------------------- 71 (222)
T ss_pred EEEECCCCCChHHHHHHHHHH--------------------HHHHHhCCCcCcccEEEe---------------------
Confidence 379999999999999999821 0011122 5555432111
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHH--hhCCcEEEEeCC---CCCCCHHHHHHHHHHH
Q 007474 80 KKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDI--IHDPILLFLDEP---TSGLDSTSAFKVVKVL 154 (602)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L--~~~p~lllLDEP---tsgLD~~~~~~i~~~l 154 (602)
.++++++.+|+.+.. .+++|.|+++++.+++++ +++|++++|||| |++||+.+... ..+
T Consensus 72 ------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~--~il 135 (222)
T cd03285 72 ------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAW--AIA 135 (222)
T ss_pred ------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHH--HHH
Confidence 123445556665322 236999999999999999 899999999999 99999988854 344
Q ss_pred HHHHh-cCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCC
Q 007474 155 GEIAK-SGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGT 195 (602)
Q Consensus 155 ~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 195 (602)
+.+.+ .|.++|++||+ .++.+++|++..+++|++...++
T Consensus 136 ~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 136 EYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 55554 58999999996 36899999999999999987664
No 409
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.65 E-value=3.1e-16 Score=165.74 Aligned_cols=164 Identities=23% Similarity=0.335 Sum_probs=118.8
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHH---hcCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAE---CRLPRS 77 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~---~~~~~~ 77 (602)
+.|.||||||||+|.++|+|+-+- ++|.-..+ .+..+-|+||.+.+- .=|.+|.+.|.-. ++ .++
T Consensus 511 LLItGPNGCGKSSLfRILggLWPv--------y~g~L~~P--~~~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~-~kg 578 (728)
T KOG0064|consen 511 LLITGPNGCGKSSLFRILGGLWPV--------YNGLLSIP--RPNNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMK-RKG 578 (728)
T ss_pred EEEECCCCccHHHHHHHHhccCcc--------cCCeeecC--CCcceEeccCCCccC-cCcccceeecCCcHHHHH-hcC
Confidence 368999999999999999999863 33332212 123478999998765 3477777655211 00 011
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCCC----CCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 007474 78 VSKKRKRERVEALIDQLGLRSAAKTFIGDE----QHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKV 153 (602)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~----~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (602)
.+ ++....+|+.+.|++.+..-.|-+ ...-||||||||+.+||.+-++|+.-+|||-||...+.....+.+.
T Consensus 579 ~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ 654 (728)
T KOG0064|consen 579 YT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQA 654 (728)
T ss_pred CC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHH
Confidence 22 345677788888877665554422 2235999999999999999999999999999999999888888887
Q ss_pred HHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhh
Q 007474 154 LGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFL 185 (602)
Q Consensus 154 l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 185 (602)
.++ .|.+.+-++|+|+ ...+-..++-.
T Consensus 655 ak~---~gi~llsithrps--lwk~h~~ll~~ 681 (728)
T KOG0064|consen 655 AKD---AGISLLSITHRPS--LWKYHTHLLEF 681 (728)
T ss_pred HHh---cCceEEEeecCcc--HHHHHHHHHhc
Confidence 764 5899999999997 56665555544
No 410
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=7.7e-16 Score=157.83 Aligned_cols=77 Identities=13% Similarity=0.199 Sum_probs=62.3
Q ss_pred CCCCChHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHh
Q 007474 109 HRGVSGGERRRVSIGIDII---------HDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLL 179 (602)
Q Consensus 109 ~~~LSgGerqRv~ia~~L~---------~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~ 179 (602)
.+-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|+++. .+++++|+.. ++.+++
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~~-~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDLA-DFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCch-hccchh
Confidence 3458999999999999985 7999999999999999999999999998753 3556666544 466666
Q ss_pred ---hHHhhhcCCce
Q 007474 180 ---NRLIFLSHGQT 190 (602)
Q Consensus 180 ---D~v~~L~~G~i 190 (602)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 67778888874
No 411
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.63 E-value=7.2e-16 Score=187.16 Aligned_cols=134 Identities=23% Similarity=0.484 Sum_probs=105.2
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCChHHHHHHHHHHHHhhCC--
Q 007474 57 FPMLTVEETLMFSAECRLPRSVSK---KRKRERVEALIDQLGLRSA-AKTFIGDEQHRGVSGGERRRVSIGIDIIHDP-- 130 (602)
Q Consensus 57 ~~~lTV~e~l~f~~~~~~~~~~~~---~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p-- 130 (602)
+..|++.|-+.|...+.......+ ++..+|. +.|..+||.+. .|+.++ .|||||+|||.||++|..+|
T Consensus 424 ~~~m~i~~l~~~~~~l~~~~~~~~~il~ei~~RL-~~L~~vGL~~L~ldR~~~-----tLSGGE~QRV~LAraL~~~p~g 497 (1809)
T PRK00635 424 FQQMSLQELFIFLSQLPSKSLSIEEVLQGLKSRL-SILIDLGLPYLTPERALA-----TLSGGEQERTALAKHLGAELIG 497 (1809)
T ss_pred HhcCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-HHHHhccccCCCCCCchh-----hCCHHHHHHHHHHHHHhcCCCC
Confidence 456888888887665431000000 1111222 23456788865 566665 49999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhc------CCceeecCCccc
Q 007474 131 ILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLS------HGQTVYSGTPAT 198 (602)
Q Consensus 131 ~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~------~G~iv~~G~~~~ 198 (602)
++++|||||+|||+.++..+.+.|++++++|.|||+++|+++ +.+.||++++|. +|++++.|++++
T Consensus 498 ~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~--vi~~aDrVi~L~pGag~~gG~Iv~~G~~~e 569 (1809)
T PRK00635 498 ITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQ--MISLADRIIDIGPGAGIFGGEVLFNGSPRE 569 (1809)
T ss_pred cEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH--HHHhCCEEEEEcCCcccCCCEEEEecCHHH
Confidence 899999999999999999999999999988999999999975 679999999996 789999998765
No 412
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.63 E-value=6.3e-16 Score=151.66 Aligned_cols=84 Identities=12% Similarity=0.114 Sum_probs=69.4
Q ss_pred CChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCce
Q 007474 112 VSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK-VLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQT 190 (602)
Q Consensus 112 LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 190 (602)
++++++ |++.+.+++.+|+++++||||+|||+.....+.. .++.+.+.+.++|+++|++ ++.+.+|++..+..|++
T Consensus 92 ~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~ 168 (202)
T cd03243 92 FMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHM 168 (202)
T ss_pred HHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEE
Confidence 555555 5777788899999999999999999999888765 5677777789999999986 57888999999999998
Q ss_pred eecCCccc
Q 007474 191 VYSGTPAT 198 (602)
Q Consensus 191 v~~G~~~~ 198 (602)
...++..+
T Consensus 169 ~~~~~~~~ 176 (202)
T cd03243 169 EELITTGG 176 (202)
T ss_pred EEEecCCe
Confidence 88776543
No 413
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.61 E-value=1.2e-15 Score=155.26 Aligned_cols=137 Identities=19% Similarity=0.175 Sum_probs=94.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc----ccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES----RLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPR 76 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~----~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~ 76 (602)
++|+||||||||||+++|+|.+++. +|+|.++|+++.. ......+++++|++ +.+.++|.++..
T Consensus 114 ~~i~g~~g~GKttl~~~l~~~~~~~--~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~--------- 181 (270)
T TIGR02858 114 TLIISPPQCGKTTLLRDLARILSTG--ISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP--------- 181 (270)
T ss_pred EEEEcCCCCCHHHHHHHHhCccCCC--CceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch---------
Confidence 4799999999999999999999864 5999999998742 23334457888865 345556655421
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 77 SVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
+.+ ......+..+|+++++|||++ ...+...++.
T Consensus 182 ---k~~-------------------------------------~~~~~i~~~~P~villDE~~~------~e~~~~l~~~ 215 (270)
T TIGR02858 182 ---KAE-------------------------------------GMMMLIRSMSPDVIVVDEIGR------EEDVEALLEA 215 (270)
T ss_pred ---HHH-------------------------------------HHHHHHHhCCCCEEEEeCCCc------HHHHHHHHHH
Confidence 000 012233336999999999974 3334445555
Q ss_pred HHhcCcEEEEEEcCCcHHHH------------HHhhHHhhhcCCceeecCCccc
Q 007474 157 IAKSGSVVIMSIHQPSYRIF------------SLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 157 l~~~g~tvi~~~H~~~~~i~------------~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+ ++|.++|+++|+++.+-. .+|||+++|++|+ ..|.+.+
T Consensus 216 ~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~ 266 (270)
T TIGR02858 216 L-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEA 266 (270)
T ss_pred H-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceee
Confidence 4 469999999998653212 5689999999887 5565544
No 414
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=6.6e-16 Score=159.70 Aligned_cols=183 Identities=24% Similarity=0.292 Sum_probs=127.7
Q ss_pred EEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc----------ccccceEEEEccCCc-----CCCCCCHHHHH
Q 007474 2 AILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES----------RLLKIISAYVMQDEL-----LFPMLTVEETL 66 (602)
Q Consensus 2 ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~----------~~~~~~~~yv~Q~~~-----l~~~lTV~e~l 66 (602)
+++||||-||||||+.|+.+.-.-+..=+|++..+.+-. +.-.++...+..++. --...|+.|-|
T Consensus 294 GLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl 373 (807)
T KOG0066|consen 294 GLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERL 373 (807)
T ss_pred cccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 789999999999999999885321212344444433210 000111112111111 12346777777
Q ss_pred HH-HHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 007474 67 MF-SAECRLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDST 145 (602)
Q Consensus 67 ~f-~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~ 145 (602)
.- +..+|. +.....+.+...+|.-||.+.-...+. ....|||-|-||++||||...|.+|.|||||+.||-.
T Consensus 374 ~~v~~ELra---iGA~sAEarARRILAGLGFskEMQ~rP----t~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLN 446 (807)
T KOG0066|consen 374 KEVADELRA---IGADSAEARARRILAGLGFSKEMQERP----TTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLN 446 (807)
T ss_pred HHHHHHHHH---hccccchhHHHHHHhhcCCChhHhcCC----ccccCCceeeehhHHHHHhcCceeeeecCCccccccc
Confidence 53 334442 233345667888999999876543332 3369999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeec-CC
Q 007474 146 SAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYS-GT 195 (602)
Q Consensus 146 ~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~-G~ 195 (602)
....+-+.|..+. +|.++++|+-. .+-..|..|+.|++-++-|. |.
T Consensus 447 AVIWLdNYLQgWk---KTLLIVSHDQg-FLD~VCtdIIHLD~qkLhyYrGN 493 (807)
T KOG0066|consen 447 AVIWLDNYLQGWK---KTLLIVSHDQG-FLDSVCTDIIHLDNQKLHYYRGN 493 (807)
T ss_pred eeeehhhHHhhhh---heeEEEecccc-hHHHHHHHHhhhhhhhhhhhcch
Confidence 9999889998885 69999999987 47889999999998877554 54
No 415
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.55 E-value=9.6e-15 Score=150.84 Aligned_cols=167 Identities=25% Similarity=0.403 Sum_probs=121.1
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCC------CCceeEEEECCEecccccccceEEEEccCC-cCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEK------ESLKGTVTLNGAVLESRLLKIISAYVMQDE-LLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~------~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~-~l~~~lTV~e~l~f~~~~~ 73 (602)
++|+|+|||||||||++|.|.... .+.+|.|.+--.. ..+.+|.+. .-+..-|+.|++. +
T Consensus 412 vaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--------~~a~iPge~Ep~f~~~tilehl~-----s 478 (593)
T COG2401 412 VAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--------VSALIPGEYEPEFGEVTILEHLR-----S 478 (593)
T ss_pred EEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc--------hhhccCcccccccCchhHHHHHh-----h
Confidence 479999999999999999997541 1345666552211 234555542 2344667777763 1
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 007474 74 LPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKV 153 (602)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (602)
.+. +-....++|++.||.+.- .-....+.||-|||.|+.||.++..+|.+++.||=-+.||+.++..+.+-
T Consensus 479 ~tG------D~~~AveILnraGlsDAv---lyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArk 549 (593)
T COG2401 479 KTG------DLNAAVEILNRAGLSDAV---LYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARK 549 (593)
T ss_pred ccC------chhHHHHHHHhhccchhh---hhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHH
Confidence 111 122456789999987532 11123456999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-CcEEEEEEcCCcHHHHHH-hhHHhhhcCCce
Q 007474 154 LGEIAKS-GSVVIMSIHQPSYRIFSL-LNRLIFLSHGQT 190 (602)
Q Consensus 154 l~~l~~~-g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~i 190 (602)
|.+++++ |.|.++++|.|+. +-.+ -|+++++.=|+.
T Consensus 550 iselaRe~giTlivvThrpEv-~~AL~PD~li~vgYg~v 587 (593)
T COG2401 550 ISELAREAGITLIVVTHRPEV-GNALRPDTLILVGYGKV 587 (593)
T ss_pred HHHHHHHhCCeEEEEecCHHH-HhccCCceeEEeecccc
Confidence 9999974 9999999999862 4444 477776655544
No 416
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.52 E-value=3.1e-12 Score=128.42 Aligned_cols=195 Identities=12% Similarity=0.108 Sum_probs=140.8
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCC-CCC--hhhHHH----HHHHHHHHHHHHHHHHHhHHHHHHHhhH-H
Q 007474 304 RSNTNSRRMPELFGTRLGAQLVIACVLATLYWQL-DDS--PKGTRL----RLAFVAFAMTTIFYNCAREIPALLQERN-I 375 (602)
Q Consensus 304 R~~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~~-~~~--~~~~~~----~~g~~f~~~~~~~~~~~~~i~~~~~er~-v 375 (602)
|+++...|||.....-+++-+++.+++|.++-+. +.. ..+... -.|.+.+.+..... ..... ...||. -
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~--~~~~~-~~~~~~~g 77 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSF--FSGIS-VIWDRQFG 77 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHH--HhhhH-HHHHHHhC
Confidence 6778889999999999999999999999887543 111 112111 11222222211111 11111 222322 2
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 007474 376 FIRETSYNAYRVSSYVLAHALASIPSMITLSLVFALTTFWAVGLAGGFSGFLFFFITMFASYWAGTSFMAFVAGFIPNIQ 455 (602)
Q Consensus 376 ~~rE~~~~~Y~~~~y~~a~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~i~~~~~~~~ 455 (602)
+.++....-.+...|+++|.+.+++..++..+++..+.+++.+++. ..++.+++..++..++..++|.++++..++.+
T Consensus 78 ~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~ 155 (236)
T TIGR01247 78 FLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSME 155 (236)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 2333333445688999999999999999999999999988877554 34555555556666778899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCcccchhhhhccChhHHHHHHHHh
Q 007474 456 IGFTIVVAILGLSLLFCGFYISHDEIPSYWIWFHYVSLVKYPFQGALQ 503 (602)
Q Consensus 456 ~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~~~l~~ 503 (602)
.+..+.+.+..+++.+||.+.|.+.+|+|++|+.+++|++|+.|++-.
T Consensus 156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~ 203 (236)
T TIGR01247 156 GFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARY 203 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHH
Confidence 888888899999999999999999999999999999999999998654
No 417
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.51 E-value=7.8e-15 Score=141.94 Aligned_cols=77 Identities=14% Similarity=0.152 Sum_probs=56.0
Q ss_pred CCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCC
Q 007474 111 GVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVV-KVLGEIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHG 188 (602)
Q Consensus 111 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~-~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G 188 (602)
.+|+|++|...+.. .+.+|+++++|||++|+|+.....+. ..++.+.++ +.++|++||++ ++.+++|+.--+.++
T Consensus 61 ~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~~ 137 (185)
T smart00534 61 TFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRNL 137 (185)
T ss_pred HHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceEE
Confidence 48887776333332 34599999999999999999887775 566777774 89999999997 477777753333334
Q ss_pred ce
Q 007474 189 QT 190 (602)
Q Consensus 189 ~i 190 (602)
+.
T Consensus 138 ~~ 139 (185)
T smart00534 138 HM 139 (185)
T ss_pred EE
Confidence 33
No 418
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.50 E-value=1.9e-14 Score=141.13 Aligned_cols=120 Identities=20% Similarity=0.248 Sum_probs=83.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+||||+|||||++++++..- ..+...|| +...+.+++.|++...
T Consensus 32 ~~l~G~n~~GKstll~~i~~~~~-------------------la~~G~~v---pa~~~~l~~~d~I~~~----------- 78 (204)
T cd03282 32 HIITGPNMSGKSTYLKQIALLAI-------------------MAQIGCFV---PAEYATLPIFNRLLSR----------- 78 (204)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-------------------HHHcCCCc---chhhcCccChhheeEe-----------
Confidence 47999999999999999988731 11111234 2334556667766321
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHh
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVV-KVLGEIAK 159 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~-~~l~~l~~ 159 (602)
++..+..+.. .+.+|+|++|+ +.+.+++++|++++||||++|+|+.....+. ..++.+.+
T Consensus 79 -------------~~~~d~~~~~-----~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~ 139 (204)
T cd03282 79 -------------LSNDDSMERN-----LSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK 139 (204)
T ss_pred -------------cCCccccchh-----hhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh
Confidence 1222111111 23489888865 5667789999999999999999998766654 56788888
Q ss_pred cCcEEEEEEcCCc
Q 007474 160 SGSVVIMSIHQPS 172 (602)
Q Consensus 160 ~g~tvi~~~H~~~ 172 (602)
.|.++|++||+.+
T Consensus 140 ~~~~~i~~TH~~~ 152 (204)
T cd03282 140 KESTVFFATHFRD 152 (204)
T ss_pred cCCEEEEECChHH
Confidence 8999999999864
No 419
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.48 E-value=8.4e-14 Score=137.94 Aligned_cols=140 Identities=19% Similarity=0.169 Sum_probs=94.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|.||||+|||||||.+++..-. |. .|..+... +..++++.| +++.+++.|++..+
T Consensus 33 ~~l~Gpn~sGKstllr~i~~~~~l----~~---~g~~vp~~--~~~i~~~~~---i~~~~~~~~~ls~g----------- 89 (216)
T cd03284 33 LLITGPNMAGKSTYLRQVALIALL----AQ---IGSFVPAS--KAEIGVVDR---IFTRIGASDDLAGG----------- 89 (216)
T ss_pred EEEECCCCCChHHHHHHHHHHHHH----hc---cCCeeccc--cceecceee---EeccCCchhhhccC-----------
Confidence 479999999999999999875321 11 12222211 234566654 56777887776432
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCCh--HHHHHHHHHHHHhhCCcEEEEeCC---CCCCCHHHHHHHHHHHH
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSG--GERRRVSIGIDIIHDPILLFLDEP---TSGLDSTSAFKVVKVLG 155 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg--GerqRv~ia~~L~~~p~lllLDEP---tsgLD~~~~~~i~~~l~ 155 (602)
.|. .|+++++-+...+.+|++++|||| |+++|.... ....++
T Consensus 90 -------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~ 136 (216)
T cd03284 90 -------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVE 136 (216)
T ss_pred -------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHH
Confidence 111 233444444444679999999999 888887552 234555
Q ss_pred HHHhc-CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 156 EIAKS-GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 156 ~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.+. +.++|++||+. ++.+++|++.-+.+|++...+..++
T Consensus 137 ~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~ 178 (216)
T cd03284 137 YLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGG 178 (216)
T ss_pred HHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCe
Confidence 56665 89999999995 5788999988888898877665554
No 420
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.46 E-value=1.2e-13 Score=143.23 Aligned_cols=164 Identities=24% Similarity=0.357 Sum_probs=121.0
Q ss_pred EEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCHH
Q 007474 2 AILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSKK 81 (602)
Q Consensus 2 ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~~ 81 (602)
..+|.||.||||++++++|+++|+. .|+|-.- .++|=||.-.--..-||++.+.--.+ +.-
T Consensus 371 vmlgEngtgkTTfi~mlag~~~pd~-~~e~p~l-----------nVSykpqkispK~~~tvR~ll~~kIr-------~ay 431 (592)
T KOG0063|consen 371 VMLGENGTGKTTFIRMLAGRLKPDE-GGEIPVL-----------NVSYKPQKISPKREGTVRQLLHTKIR-------DAY 431 (592)
T ss_pred EEEccCCcchhHHHHHHhcCCCCCc-cCccccc-----------ceeccccccCccccchHHHHHHHHhH-------hhh
Confidence 4689999999999999999988653 3444322 24566665433334588887642111 011
Q ss_pred HHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hc
Q 007474 82 RKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA-KS 160 (602)
Q Consensus 82 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~-~~ 160 (602)
....-+.++++-|.+++..|.-+- +|||||.|||++|..|-..+++.+.|||.+-||++++..--+.+++.. +.
T Consensus 432 ~~pqF~~dvmkpL~ie~i~dqevq-----~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilha 506 (592)
T KOG0063|consen 432 MHPQFVNDVMKPLQIENIIDQEVQ-----GLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHA 506 (592)
T ss_pred cCHHHHHhhhhhhhHHHHHhHHhh-----cCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhc
Confidence 123467888888888887776664 599999999999999999999999999999999999999999998865 56
Q ss_pred CcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCcc
Q 007474 161 GSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPA 197 (602)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 197 (602)
++|-.++-|+.-- .--++||+ +++.|.++
T Consensus 507 kktafvVEhdfIm-aTYladrv-------ivf~G~ps 535 (592)
T KOG0063|consen 507 KKTAFVVEHDFIM-ATYLADRV-------IVFEGQPS 535 (592)
T ss_pred cchhhhhhhHHHH-HHhhccee-------EEEecCcc
Confidence 8999999998542 22356666 45556554
No 421
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.43 E-value=4.9e-12 Score=124.44 Aligned_cols=151 Identities=16% Similarity=0.143 Sum_probs=122.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhHhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007474 385 YRVSSYVLAHALASIPSMITLSLVFALTTFWAVGLAGGFSGFLFFFITMFASYWAGTSFMAFVAGFIPNIQIGFTIVVAI 464 (602)
Q Consensus 385 Y~~~~y~~a~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~ 464 (602)
-+...++++|++..++..+++++++..+.|++.|++.. +++.+++.+++..++..+++.+++++.++...+ +....
T Consensus 57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~--~~~~~ 132 (208)
T TIGR03062 57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRF--LALVL 132 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH--HHHHH
Confidence 34567799999999999999999999999999999864 466677777788888899999999999876543 34445
Q ss_pred HHHHHHhcccccCCCCcccchhhhhccChhHHHHHHHHhhhhCCCCcccccCccccCCCCCCCCCChhhHHHHhhhcccc
Q 007474 465 LGLSLLFCGFYISHDEIPSYWIWFHYVSLVKYPFQGALQNEYGDPNRCFLTGLQFFDGTPFDGLPNSTKIELLQSMSNVL 544 (602)
Q Consensus 465 ~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~~~l~~nef~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (602)
+.+.++++|.+.|.+.+|+|++|+.+++|++|+.+++-...+++.
T Consensus 133 ~~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~----------------------------------- 177 (208)
T TIGR03062 133 LVLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGN----------------------------------- 177 (208)
T ss_pred HHHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc-----------------------------------
Confidence 556777899999999999999999999999999999866555320
Q ss_pred ccccCCcccccchHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007474 545 GRNITGSTCLTTGMKILEQKGITDISKWKCIWILVAFGFLFRVLFYFTLLFGS 597 (602)
Q Consensus 545 g~~~~~~~C~~~G~~~L~~~g~~~~~~w~~~~il~~~~~~f~~l~~~~L~~~~ 597 (602)
..+.|.++++++++.+++.++++...|+++
T Consensus 178 -----------------------~~~~~~~~~~L~~~~~v~~~la~~~~~~~~ 207 (208)
T TIGR03062 178 -----------------------DGTLWQAVAVLLLILVVFLALSLLSARRKR 207 (208)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 124577889999999988888887766443
No 422
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.42 E-value=6.3e-11 Score=118.74 Aligned_cols=188 Identities=13% Similarity=0.081 Sum_probs=122.2
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHH-HHHHHHHHHHHHHHHHHhHHHHHHHhh--HHHHHHhcCCCCC
Q 007474 310 RRMPELFGTRLGAQLVIACVLATLYWQLDDSPKGTRL-RLAFVAFAMTTIFYNCAREIPALLQER--NIFIRETSYNAYR 386 (602)
Q Consensus 310 ~Rd~~~~~~r~~~~i~~~li~G~~f~~~~~~~~~~~~-~~g~~f~~~~~~~~~~~~~i~~~~~er--~v~~rE~~~~~Y~ 386 (602)
+|||.....-+.+.+++-++.+.+|-+-. +.+..+. ..+.+-+.. ..++....--....|| ..+.|=+ ..=.+
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~er~~G~l~rl~-~~P~~ 77 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSV-THNRGATFIPVLMALAA--ISTAFTGQAIAVARDRRYGALKRLG-ATPLP 77 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcchhHhhHHHHHHHH--HHHHHHHHHHHHHHHHHhCHHHHHh-cCCCc
Confidence 69999999999999888777777775421 1112211 112111111 1111111112223333 3333333 33447
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHH
Q 007474 387 VSSYVLAHALASIPSMITLSLVFALTTFWAVGLAGGFSGFLFFFITMFASYWAGTSFMAFVAGFIP---NIQIGFTIVVA 463 (602)
Q Consensus 387 ~~~y~~a~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~i~~~~~---~~~~a~~~~~~ 463 (602)
+..|+++|++..++..++..+++. +++++.|++.....+ .+++...+....+.+++.+++.+.+ +.+.+..+...
T Consensus 78 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 155 (232)
T TIGR00025 78 RLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL 155 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 899999999988888777655554 556677887654333 3333344445556667777777764 45555778888
Q ss_pred HHHHHHHhcccccCCCCcccchhhhhccChhHHHHHHHHh
Q 007474 464 ILGLSLLFCGFYISHDEIPSYWIWFHYVSLVKYPFQGALQ 503 (602)
Q Consensus 464 ~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~~~l~~ 503 (602)
+..+++++||.+.|.+.+|.|++|+.+++|++|+.+++-.
T Consensus 156 ~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~ 195 (232)
T TIGR00025 156 VWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQ 195 (232)
T ss_pred HHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHH
Confidence 8889999999999999999999999999999999998744
No 423
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.41 E-value=1.1e-12 Score=129.71 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHhc---CcEEEEEEcCCc
Q 007474 115 GERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV-VKVLGEIAKS---GSVVIMSIHQPS 172 (602)
Q Consensus 115 GerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i-~~~l~~l~~~---g~tvi~~~H~~~ 172 (602)
-|-||++++++++.+|+++++|||++|+|+.....+ ...++++.++ +.++|++||+++
T Consensus 94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 378999999999999999999999999999765555 5688888765 248999999975
No 424
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.39 E-value=1.7e-10 Score=117.21 Aligned_cols=201 Identities=11% Similarity=0.015 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHhhcC-hHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHH-----HHHHHHHHHHHHHHHhHH-HHHH
Q 007474 298 MLFLSKRSNTNSRRM-PELFGTRLGAQLVIACVLATLYWQLDDSPKGTRLRL-----AFVAFAMTTIFYNCAREI-PALL 370 (602)
Q Consensus 298 ~~~L~~R~~~~~~Rd-~~~~~~r~~~~i~~~li~G~~f~~~~~~~~~~~~~~-----g~~f~~~~~~~~~~~~~i-~~~~ 370 (602)
...+.+|+++..+|+ |......+++.++.-+++|..+-....+..+ .+.. |++-+.+.+.. ..... ..+.
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g-~~y~~f~~pg~l~~~~~~~~--~~~~~~~~~~ 83 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDG-VSYAAFLAAGMVATSAMTAS--TFETIYATFA 83 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCC-CCHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 455669999999999 9999999999999888888887543121112 1111 22211111111 01111 1122
Q ss_pred H--hhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007474 371 Q--ERNIFIRETSYNAYRVSSYVLAHALASIPSMITLSLVFALTTFWAVGLAGGFSGFLFFFITMFASYWAGTSFMAFVA 448 (602)
Q Consensus 371 ~--er~v~~rE~~~~~Y~~~~y~~a~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~i~ 448 (602)
. |+..++|-+..- -++..+.++|++.+.-..++..++...+.++ .|..+. ......+..+++..++..++|.+++
T Consensus 84 ~~r~~g~~~~l~~~P-v~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a 160 (253)
T TIGR01291 84 RMRVTRTWEAMLYTP-ITVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLVA 160 (253)
T ss_pred HHHHcccHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 222333332222 2778899999999987777776665555543 344433 3344444455566677778999999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcccccCCCCcccchhhhhccChhHHHHHHHHhh
Q 007474 449 GFIPNIQIGFTIVVAILGLSLLFCGFYISHDEIPSYWIWFHYVSLVKYPFQGALQN 504 (602)
Q Consensus 449 ~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~~~l~~n 504 (602)
++.++.+.+..+...++.+++.+||.+.|.+++|+|++|+.+++|+.|+.|++-..
T Consensus 161 ~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~ 216 (253)
T TIGR01291 161 ALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPV 216 (253)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHH
Confidence 99999998888889999999999999999999999999999999999999996443
No 425
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.36 E-value=1.1e-12 Score=130.28 Aligned_cols=87 Identities=28% Similarity=0.495 Sum_probs=64.9
Q ss_pred HHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007474 85 ERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDII----HDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKS 160 (602)
Q Consensus 85 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~----~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~ 160 (602)
+.+.+.++..++... .+|||||.+++||.-|+ .+.++++||||.++||...+..+.++|+++.+
T Consensus 121 ~~~~~~l~~~~i~~~-----------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISPE-----------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTTT-----------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred ccccccccccccccc-----------ccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 456666776666542 49999999999997765 46789999999999999999999999999875
Q ss_pred CcEEEEEEcCCcHHHHHHhhHHhhh
Q 007474 161 GSVVIMSIHQPSYRIFSLLNRLIFL 185 (602)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~~L 185 (602)
+.-+|++||++ +.++.+|+.+.+
T Consensus 189 ~~Q~ii~Th~~--~~~~~a~~~~~v 211 (220)
T PF02463_consen 189 QSQFIITTHNP--EMFEDADKLIGV 211 (220)
T ss_dssp TSEEEEE-S-H--HHHTT-SEEEEE
T ss_pred ccccccccccc--cccccccccccc
Confidence 46799999996 478888877655
No 426
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.34 E-value=6.8e-10 Score=112.71 Aligned_cols=203 Identities=7% Similarity=0.002 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCC-CC------Chh-h--HHHHHHHHHHHHHHHHHHHHh
Q 007474 295 WTEMLFLSKRSNTNSRRMPELFGTRLGAQLVIACVLATLYWQL-DD------SPK-G--TRLRLAFVAFAMTTIFYNCAR 364 (602)
Q Consensus 295 ~~q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~~-~~------~~~-~--~~~~~g~~f~~~~~~~~~~~~ 364 (602)
+++++.+++|+++...|||..+..-+++.+++-+++|.+|-.. +. +.. + ..--.|++-+.+....+. .
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~--~ 78 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQ--S 78 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHH--h
Confidence 3678999999999999999999999999999999999998542 11 100 0 111122222222111111 1
Q ss_pred HHHHHHHh--hHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHH
Q 007474 365 EIPALLQE--RNIFIRETSYNAYRVSSYVLAHALASIPSMITLSLVFALTTFWAVGLAGGFSGFLFFFITMFASYWAGTS 442 (602)
Q Consensus 365 ~i~~~~~e--r~v~~rE~~~~~Y~~~~y~~a~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~ 442 (602)
.. ....| +..+.+=+... .+...+.+++++...-..++..+++.++.+. .|.+.....+......+++..+...+
T Consensus 79 ~~-~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~ 155 (253)
T TIGR03861 79 SL-SMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGA 155 (253)
T ss_pred hh-HhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 11 12222 22333333333 4778899999999988777776665554443 36655544444444444556666778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCc---ccchhhhhccChhHHHHHHHH
Q 007474 443 FMAFVAGFIPNIQIGFTIVVAILGLSLLFCGFYISHDEI---PSYWIWFHYVSLVKYPFQGAL 502 (602)
Q Consensus 443 ~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~i---p~~~~Wl~yiSp~~y~~~~l~ 502 (602)
+|.+++.++++.+.+..+.+.++.+++.+||.+.|.+.+ |+|++|+.++||+.|..|++-
T Consensus 156 lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R 218 (253)
T TIGR03861 156 LGLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVR 218 (253)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHH
Confidence 999999999998888888888888999999999998766 789999999999999998873
No 427
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.34 E-value=2.1e-12 Score=127.83 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 007474 115 GERRRVSIGIDIIHDPILLFLDEPT-----SGLDSTSAFKVVKVLGEIAK 159 (602)
Q Consensus 115 GerqRv~ia~~L~~~p~lllLDEPt-----sgLD~~~~~~i~~~l~~l~~ 159 (602)
-|++++.||++++.+|+++++|||| +|||+..+..+.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999875
No 428
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.28 E-value=6.4e-12 Score=130.59 Aligned_cols=97 Identities=25% Similarity=0.349 Sum_probs=84.9
Q ss_pred HHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcE
Q 007474 84 RERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSV 163 (602)
Q Consensus 84 ~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~t 163 (602)
++..+++++.+.|.+..++-+.. |||||-||.+||.+-+.+.++.++|||.+-||...+..-...+|.+.+..+=
T Consensus 191 r~~~~~~~~~~~L~~~~~re~~~-----lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~Y 265 (592)
T KOG0063|consen 191 RDNKEEVCDQLDLNNLLDREVEQ-----LSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRY 265 (592)
T ss_pred cccHHHHHHHHHHhhHHHhhhhh-----cccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCe
Confidence 34677889999999888877764 9999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEcCCcHHHHHHhhHHhhhc
Q 007474 164 VIMSIHQPSYRIFSLLNRLIFLS 186 (602)
Q Consensus 164 vi~~~H~~~~~i~~~~D~v~~L~ 186 (602)
||++.||.+. .--+.|-+..|.
T Consensus 266 iIVVEHDLsV-LDylSDFiCcLY 287 (592)
T KOG0063|consen 266 IIVVEHDLSV-LDYLSDFICCLY 287 (592)
T ss_pred EEEEEeechH-HHhhhcceeEEe
Confidence 9999999873 444567666665
No 429
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.27 E-value=3.7e-12 Score=147.23 Aligned_cols=61 Identities=20% Similarity=0.293 Sum_probs=55.6
Q ss_pred CCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHhcCcEEEEEEcCCc
Q 007474 111 GVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV-VKVLGEIAKSGSVVIMSIHQPS 172 (602)
Q Consensus 111 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i-~~~l~~l~~~g~tvi~~~H~~~ 172 (602)
.+|+|+++++.|++.+ .+|+++++|||++|+|+.....+ ..+++.+.+.|.++|++||+..
T Consensus 385 tfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 385 TFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred HHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 4999999999998876 89999999999999999999999 5788888888999999999965
No 430
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.27 E-value=4.5e-12 Score=142.91 Aligned_cols=77 Identities=21% Similarity=0.345 Sum_probs=70.5
Q ss_pred CCCChHHHHHHHHHHHHhhC----CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhh
Q 007474 110 RGVSGGERRRVSIGIDIIHD----PILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFL 185 (602)
Q Consensus 110 ~~LSgGerqRv~ia~~L~~~----p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 185 (602)
+.+||||+||++||++++.. |+++++||||+|||+.++..+.+.|+++++ +++||++||+|. +...+|++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 56899999999999999985 699999999999999999999999999975 899999999985 45789999999
Q ss_pred cCCc
Q 007474 186 SHGQ 189 (602)
Q Consensus 186 ~~G~ 189 (602)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8875
No 431
>PRK10869 recombination and repair protein; Provisional
Probab=99.23 E-value=1.1e-11 Score=138.97 Aligned_cols=77 Identities=26% Similarity=0.434 Sum_probs=70.1
Q ss_pred CCCChHHHHHHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhh
Q 007474 110 RGVSGGERRRVSIGIDIIH----DPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFL 185 (602)
Q Consensus 110 ~~LSgGerqRv~ia~~L~~----~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 185 (602)
+.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+|||+||+|. +..++|+.+++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 4589999999999999997 5899999999999999999999999999975 689999999985 56899999999
Q ss_pred cCCc
Q 007474 186 SHGQ 189 (602)
Q Consensus 186 ~~G~ 189 (602)
.++.
T Consensus 506 ~k~~ 509 (553)
T PRK10869 506 SKET 509 (553)
T ss_pred eccc
Confidence 8753
No 432
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.22 E-value=1.1e-11 Score=140.01 Aligned_cols=78 Identities=22% Similarity=0.327 Sum_probs=69.4
Q ss_pred CCCCChHHHHHHHHHHHHh----------hCCcEEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHH
Q 007474 109 HRGVSGGERRRVSIGIDII----------HDPILLFLDEPT-SGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFS 177 (602)
Q Consensus 109 ~~~LSgGerqRv~ia~~L~----------~~p~lllLDEPt-sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~ 177 (602)
...||||||||++||++|+ .+|++++||||| ++||+.+...+.+.|+++ +|.+||+++|++. ...
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~~ 541 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DPQ 541 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--chh
Confidence 3579999999999999887 599999999998 789999999999999998 5889999999974 567
Q ss_pred HhhHHhhhcC-Cce
Q 007474 178 LLNRLIFLSH-GQT 190 (602)
Q Consensus 178 ~~D~v~~L~~-G~i 190 (602)
.+|++++|.+ |+.
T Consensus 542 ~~d~~~~l~~~~~~ 555 (562)
T PHA02562 542 KFDRHLKMEKVGRF 555 (562)
T ss_pred hhhcEEEEEEECCe
Confidence 8999999986 553
No 433
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.21 E-value=1.9e-11 Score=147.36 Aligned_cols=81 Identities=21% Similarity=0.267 Sum_probs=74.0
Q ss_pred CCCCCCChHHHHHHHHHHHHhh----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHH
Q 007474 107 EQHRGVSGGERRRVSIGIDIIH----------DPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIF 176 (602)
Q Consensus 107 ~~~~~LSgGerqRv~ia~~L~~----------~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~ 176 (602)
..++.|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+++...|++|++++|++. ...
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~~ 1024 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FRE 1024 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHH
Confidence 3456799999999999999986 79999999999999999999999999999888999999999987 588
Q ss_pred HHhhHHhhhcCC
Q 007474 177 SLLNRLIFLSHG 188 (602)
Q Consensus 177 ~~~D~v~~L~~G 188 (602)
.++|+|.|++.|
T Consensus 1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1025 RIPHRILVKKTN 1036 (1042)
T ss_pred hhCCEEEEEECC
Confidence 899999999653
No 434
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.21 E-value=3.8e-11 Score=119.46 Aligned_cols=63 Identities=29% Similarity=0.474 Sum_probs=54.4
Q ss_pred CCCChHHHHHHHHHHHHhhCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCc
Q 007474 110 RGVSGGERRRVSIGIDIIHDP---ILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPS 172 (602)
Q Consensus 110 ~~LSgGerqRv~ia~~L~~~p---~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 172 (602)
..+|.|+||.+.++..|...+ .++++|||-++|+|..+..+++.|+++++.+.-+|+|||.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 457999999999999998877 899999999999999999999999888776788999999985
No 435
>PRK13695 putative NTPase; Provisional
Probab=99.20 E-value=1.5e-11 Score=117.67 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=64.8
Q ss_pred CCChHHHHHHHHHHHHhhCCcEEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCC
Q 007474 111 GVSGGERRRVSIGIDIIHDPILLFLDEP--TSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHG 188 (602)
Q Consensus 111 ~LSgGerqRv~ia~~L~~~p~lllLDEP--tsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 188 (602)
.+||+|+.+..+++..+.+|+++++||| +.++| ..+.+.++++.+.|+++|+++|+. .+...+|++..+.+|
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~~ 151 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPGG 151 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCCc
Confidence 4999999999999999999999999995 44444 445677777767799999999983 467889999999999
Q ss_pred ceeecC
Q 007474 189 QTVYSG 194 (602)
Q Consensus 189 ~iv~~G 194 (602)
+++..-
T Consensus 152 ~i~~~~ 157 (174)
T PRK13695 152 RVYELT 157 (174)
T ss_pred EEEEEc
Confidence 987653
No 436
>PRK15066 inner membrane transport permease; Provisional
Probab=99.19 E-value=2.3e-08 Score=101.85 Aligned_cols=241 Identities=12% Similarity=0.153 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHHHHhhcChHH-HHHHHHHHHHHHHHHHHHhcC-CCCChhhHHH----HHHHHHHHHHHHHHHHHh-HH
Q 007474 294 FWTEMLFLSKRSNTNSRRMPEL-FGTRLGAQLVIACVLATLYWQ-LDDSPKGTRL----RLAFVAFAMTTIFYNCAR-EI 366 (602)
Q Consensus 294 ~~~q~~~L~~R~~~~~~Rd~~~-~~~r~~~~i~~~li~G~~f~~-~~~~~~~~~~----~~g~~f~~~~~~~~~~~~-~i 366 (602)
+|+-++.+.+|+.+...||+.. ...-+++.++..+++|.++-. .+. ..+... -.|.+-+... ..+.. ..
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~-~~~~~y~~fl~pGll~~~~~---~~~~~~~~ 81 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGE-MGGFSYMQFIVPGLIMMSVI---TNSYSNVA 81 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCC-CCCCcHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 4678899999999999999854 344445555666666665421 111 111110 1122211111 11111 12
Q ss_pred HHHHHhhHH-HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 007474 367 PALLQERNI-FIRETSYNAYRVSSYVLAHALASIPSMITLSLVFALTTFWAVGLAGGFSGFLFFFITMFASYWAGTSFMA 445 (602)
Q Consensus 367 ~~~~~er~v-~~rE~~~~~Y~~~~y~~a~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~ 445 (602)
..+..+|.. ..++...---+...+.+++++...-..++..++..++.+...|.+.. ....++..+++........+.
T Consensus 82 ~~i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl 159 (257)
T PRK15066 82 SSFFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGL 159 (257)
T ss_pred HHHHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHH
Confidence 223333311 01111222457788999999988766666655555554444466543 222222333332333334588
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCcccchhhhhccChhHHHHHHHHhhhhCCCCcccccCccccCCCCC
Q 007474 446 FVAGFIPNIQIGFTIVVAILGLSLLFCGFYISHDEIPSYWIWFHYVSLVKYPFQGALQNEYGDPNRCFLTGLQFFDGTPF 525 (602)
Q Consensus 446 ~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~~~l~~nef~~~~~C~~~~~~~~~~~~~ 525 (602)
+++.+.++.+....+.+.++.+++..||.+.|.+++|+|++|+.++||+.|..|++=..-++
T Consensus 160 ~~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~g------------------ 221 (257)
T PRK15066 160 INAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFLG------------------ 221 (257)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHcC------------------
Confidence 88888888888888888889999999999999999999999999999999999887432111
Q ss_pred CCCCChhhHHHHhhhccccccccCCcccccchHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 007474 526 DGLPNSTKIELLQSMSNVLGRNITGSTCLTTGMKILEQKGITDISKWKCIWILVAFGFLFRVLFYFTLLFGSK 598 (602)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~g~~~~~~~C~~~G~~~L~~~g~~~~~~w~~~~il~~~~~~f~~l~~~~L~~~~~ 598 (602)
......|.++++++++.+++.+++....|+.++
T Consensus 222 ----------------------------------------~~~~~~~~~l~~l~~~~~v~~~la~~~~~r~~~ 254 (257)
T PRK15066 222 ----------------------------------------ISDVPLWLAFAVLLVFIVVLYLLAWYLLERGRG 254 (257)
T ss_pred ----------------------------------------CCCccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 011235778899999999888888777665443
No 437
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.17 E-value=2e-11 Score=141.54 Aligned_cols=81 Identities=19% Similarity=0.223 Sum_probs=64.0
Q ss_pred CCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCC
Q 007474 110 RGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK-VLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHG 188 (602)
Q Consensus 110 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 188 (602)
+.+|+|++|++.|++++ ++|+++++|||++|+|+.....+.. +++.+.+.|.++|++||++. +...+.....+.++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e--l~~~~~~~~~v~~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE--LKALMYNREGVENA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH--HHHHHhcCCCeEEE
Confidence 35999999999999998 8999999999999999999988864 67788778999999999964 44444332333355
Q ss_pred ceeec
Q 007474 189 QTVYS 193 (602)
Q Consensus 189 ~iv~~ 193 (602)
.+.++
T Consensus 466 ~~~~d 470 (782)
T PRK00409 466 SVEFD 470 (782)
T ss_pred EEEEe
Confidence 55553
No 438
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.14 E-value=1.5e-10 Score=129.08 Aligned_cols=135 Identities=23% Similarity=0.395 Sum_probs=101.7
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH------HHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCC
Q 007474 57 FPMLTVEETLMFSAECRLPRSVSKKRKRERVEAL------IDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDP 130 (602)
Q Consensus 57 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p 130 (602)
+..|++.|.+.|...+.+... .....+..+.++ |-.+||.-.- -++....|||||.||+-+|..+=++=
T Consensus 426 ~~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YLt----L~R~a~TLSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 426 ISEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYLT----LSRSAGTLSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred HhhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCccc----ccccCCCcChhHHHHHHHHHHhcccc
Confidence 456889999988776653211 111112222333 3335665431 12334469999999999999998764
Q ss_pred --cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhh------cCCceeecCCccc
Q 007474 131 --ILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFL------SHGQTVYSGTPAT 198 (602)
Q Consensus 131 --~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~ 198 (602)
=+.+||||+.||.+..-..+++.|++|++.|.|+|++-||+ +....+|+|+=| ..|+||+.|++++
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~ 574 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEE 574 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHH
Confidence 36799999999999999999999999999999999999996 478999999887 4689999999987
No 439
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.10 E-value=2.5e-10 Score=109.95 Aligned_cols=77 Identities=14% Similarity=0.140 Sum_probs=62.9
Q ss_pred CCCChHHHH------HHHHHHHHhhCCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCcEEEEEEcCCcH-------
Q 007474 110 RGVSGGERR------RVSIGIDIIHDPILLFLDEPTSGLD---STSAFKVVKVLGEIAKSGSVVIMSIHQPSY------- 173 (602)
Q Consensus 110 ~~LSgGerq------Rv~ia~~L~~~p~lllLDEPtsgLD---~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~------- 173 (602)
..+|+||+| +.........+|+++++|||++.+| ...+..+.+.++.+++.|.|+|+++|+...
T Consensus 70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~ 149 (187)
T cd01124 70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGG 149 (187)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccCc
Confidence 358999998 5555555667999999999999999 888888899999998889999999998653
Q ss_pred -HHHHHhhHHhhhc
Q 007474 174 -RIFSLLNRLIFLS 186 (602)
Q Consensus 174 -~i~~~~D~v~~L~ 186 (602)
.+..++|.++.|+
T Consensus 150 ~~~~~~aD~ii~l~ 163 (187)
T cd01124 150 GDVEYLVDGVIRLR 163 (187)
T ss_pred CceeEeeeEEEEEE
Confidence 1556778777775
No 440
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.08 E-value=2.1e-09 Score=112.39 Aligned_cols=68 Identities=12% Similarity=0.100 Sum_probs=53.6
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 122 IGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 122 ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
+..+|-.+|+++++|||.+ .+..+.++.+...+.+++.|+|..+ ..+..||+..|..|++...|.+.+
T Consensus 211 l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~ 278 (308)
T TIGR02788 211 LQSCLRMRPDRIILGELRG-------DEAFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFA 278 (308)
T ss_pred HHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHH
Confidence 4456677999999999996 3456677776643346799999986 577799999999999988887766
No 441
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.06 E-value=1.2e-10 Score=139.78 Aligned_cols=65 Identities=29% Similarity=0.341 Sum_probs=60.7
Q ss_pred CCCCCCChHHHHHHHHHHHHhh--------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCC
Q 007474 107 EQHRGVSGGERRRVSIGIDIIH--------DPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQP 171 (602)
Q Consensus 107 ~~~~~LSgGerqRv~ia~~L~~--------~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~ 171 (602)
..++.|||||++|++||++|+. +|++||+||||+|||+.+...+++.|+.+++.|++|+++||..
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~ 1017 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE 1017 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH
Confidence 3456799999999999999996 8999999999999999999999999999998899999999964
No 442
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.05 E-value=1e-09 Score=109.04 Aligned_cols=63 Identities=21% Similarity=0.259 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHhc-CcEEEEEEcCCcHHHHHHhh
Q 007474 116 ERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKV-VKVLGEIAKS-GSVVIMSIHQPSYRIFSLLN 180 (602)
Q Consensus 116 erqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i-~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D 180 (602)
|-+|++-...-+++|+++|+|||.+|.|+.....+ ...++.+.+. +.++|++||+++ +.++.+
T Consensus 97 e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~--l~~~~~ 161 (222)
T cd03287 97 ELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPS--LGEILR 161 (222)
T ss_pred HHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHH--HHHHHH
Confidence 44555555555678999999999999998777775 5677888776 889999999975 445443
No 443
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.03 E-value=1.3e-11 Score=124.56 Aligned_cols=76 Identities=18% Similarity=0.255 Sum_probs=64.3
Q ss_pred CCCCChHH--------HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH-HHHHHHHHHhcCcEEEEEEcCCcHHHHHHh
Q 007474 109 HRGVSGGE--------RRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFK-VVKVLGEIAKSGSVVIMSIHQPSYRIFSLL 179 (602)
Q Consensus 109 ~~~LSgGe--------rqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~-i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~ 179 (602)
.+.+|||+ +||+++|+++..+++|.+| ||+.+|+.+... ++ +.++...+.|.|+.+|+.. ....+
T Consensus 127 G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la--~~~~~ 200 (249)
T cd01128 127 GKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA--ERRIF 200 (249)
T ss_pred CCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh--hCCCC
Confidence 34589999 9999999999999999999 999999765554 54 5555556889999999976 46789
Q ss_pred hHHhhhcCCce
Q 007474 180 NRLIFLSHGQT 190 (602)
Q Consensus 180 D~v~~L~~G~i 190 (602)
|.|.+|+.|++
T Consensus 201 paI~vl~s~sr 211 (249)
T cd01128 201 PAIDILKSGTR 211 (249)
T ss_pred CeEEEcCCCCc
Confidence 99999999987
No 444
>PRK03918 chromosome segregation protein; Provisional
Probab=99.02 E-value=2.8e-10 Score=135.43 Aligned_cols=78 Identities=27% Similarity=0.327 Sum_probs=68.8
Q ss_pred CCCCCChHHHHH------HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhH
Q 007474 108 QHRGVSGGERRR------VSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNR 181 (602)
Q Consensus 108 ~~~~LSgGerqR------v~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~ 181 (602)
.+..|||||+++ +++|++++.+|+++++||||+|||+..+..+.+.|+.++..+.+||++||++. +...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~--~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE--LKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH--HHHhCCe
Confidence 456799999994 55566788999999999999999999999999999998877889999999974 6789999
Q ss_pred HhhhcC
Q 007474 182 LIFLSH 187 (602)
Q Consensus 182 v~~L~~ 187 (602)
+++|..
T Consensus 863 ~~~l~~ 868 (880)
T PRK03918 863 VIRVSL 868 (880)
T ss_pred EEEEEe
Confidence 999974
No 445
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.99 E-value=5.1e-10 Score=104.42 Aligned_cols=62 Identities=21% Similarity=0.204 Sum_probs=48.7
Q ss_pred CChHHHHHHHHHHHHhhCCcEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcH
Q 007474 112 VSGGERRRVSIGIDIIHDPILLFLDEPTS----------GLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSY 173 (602)
Q Consensus 112 LSgGerqRv~ia~~L~~~p~lllLDEPts----------gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~ 173 (602)
.+.++.++...+.+...+|+++++|||++ +.|......+.++++...+.+.|+|+++|.+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 45566677888888999999999999994 555566677666666665569999999999864
No 446
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.98 E-value=1.1e-09 Score=134.74 Aligned_cols=69 Identities=23% Similarity=0.273 Sum_probs=61.4
Q ss_pred CCCChHHHH------HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----cCcEEEEEEcCCcHHHHHH
Q 007474 110 RGVSGGERR------RVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK-----SGSVVIMSIHQPSYRIFSL 178 (602)
Q Consensus 110 ~~LSgGerq------Rv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~-----~g~tvi~~~H~~~~~i~~~ 178 (602)
..||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|..+.. .|.+||++||++. .+..+
T Consensus 1198 ~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~-~~~~~ 1276 (1311)
T TIGR00606 1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED-FVELL 1276 (1311)
T ss_pred CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH-HHHHH
Confidence 359999999 99999999999999999999999999999999999988742 3789999999986 46555
Q ss_pred h
Q 007474 179 L 179 (602)
Q Consensus 179 ~ 179 (602)
+
T Consensus 1277 ~ 1277 (1311)
T TIGR00606 1277 G 1277 (1311)
T ss_pred h
Confidence 4
No 447
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.97 E-value=4.4e-09 Score=123.33 Aligned_cols=68 Identities=22% Similarity=0.199 Sum_probs=59.5
Q ss_pred HhhCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHH---------HHhhHHhhhcCCceeecC
Q 007474 126 IIHDPILLFLDEPTSGL-DSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIF---------SLLNRLIFLSHGQTVYSG 194 (602)
Q Consensus 126 L~~~p~lllLDEPtsgL-D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~---------~~~D~v~~L~~G~iv~~G 194 (602)
+..+|+++++|||+.+| |+..+..+.+.++++++.|.+++++||+++. +. +.||+.++|.+|++...|
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d-~~~s~~a~~i~~~~~t~i~L~n~~a~~~~ 726 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISD-AERSGIIDVLKESCPTKICLPNGAAREPG 726 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhcCchHHHHHhcCCeEEECCCccccccc
Confidence 35799999999999999 7999999999999999889999999999974 43 678888899888876555
No 448
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.97 E-value=2.8e-09 Score=100.25 Aligned_cols=64 Identities=23% Similarity=0.404 Sum_probs=52.4
Q ss_pred CCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCc
Q 007474 108 QHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPS 172 (602)
Q Consensus 108 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 172 (602)
....-|-||-=---+.+ =.++--+.+||||-++|.+.-+.+++..|+++++.|.-+|+.||.|-
T Consensus 126 sLh~~SHGEsf~~i~~~-rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 126 SLHHMSHGESFLAIFHN-RFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred chhhhccchHHHHHHHH-HhccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 33457888864333333 34677899999999999999999999999999999999999999983
No 449
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.96 E-value=9.4e-08 Score=97.16 Aligned_cols=154 Identities=12% Similarity=0.176 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHH
Q 007474 388 SSYVLAHALASIPSMITLSLVFALTTFWAVGLAGGFSGFLFFFITMFASYWAGTSFMAFVA-GFIPNIQIGFTIVVAILG 466 (602)
Q Consensus 388 ~~y~~a~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~i~-~~~~~~~~a~~~~~~~~~ 466 (602)
..+++++.+...-...+...+...+..+..|. .....+..+...+.+......++|.+++ ....+.+.+..++..+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 209 (286)
T COG0842 131 LFILLGKIVPYLVVASLIAGLVLLVIAFLLGV-PFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLIL 209 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 55677777777766666666666666666662 2233455555555666666777887555 356677888888888899
Q ss_pred HHHHhcccccCCCCcccchhhhhccChhHHHHHHHHhhhhCCCCcccccCccccCCCCCCCCCChhhHHHHhhhcccccc
Q 007474 467 LSLLFCGFYISHDEIPSYWIWFHYVSLVKYPFQGALQNEYGDPNRCFLTGLQFFDGTPFDGLPNSTKIELLQSMSNVLGR 546 (602)
Q Consensus 467 ~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~~~l~~nef~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 546 (602)
++..++|.+.|.+.+|.|++|+.++.|.+|+.+++-.....+..
T Consensus 210 ~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~------------------------------------ 253 (286)
T COG0842 210 PLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWR------------------------------------ 253 (286)
T ss_pred HHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCc------------------------------------
Confidence 99999999999999999999999999999999998665543311
Q ss_pred ccCCcccccchHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 007474 547 NITGSTCLTTGMKILEQKGITDISKWKCIWILVAFGFLFRVLFYFTLLFGSKN 599 (602)
Q Consensus 547 ~~~~~~C~~~G~~~L~~~g~~~~~~w~~~~il~~~~~~f~~l~~~~L~~~~~~ 599 (602)
..+.|.++++++++.+++.+++...++++.+.
T Consensus 254 ---------------------~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 254 ---------------------NDGIWISLLILLLFAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred ---------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 11267889999999999999998888887654
No 450
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.95 E-value=7e-09 Score=103.84 Aligned_cols=59 Identities=14% Similarity=0.235 Sum_probs=45.0
Q ss_pred CChHHHHHHHHHHHHh----hCCcEEEEeCCCCCC----CHHHHHHHHHHHHHHHhcCcEEEEEEcC
Q 007474 112 VSGGERRRVSIGIDII----HDPILLFLDEPTSGL----DSTSAFKVVKVLGEIAKSGSVVIMSIHQ 170 (602)
Q Consensus 112 LSgGerqRv~ia~~L~----~~p~lllLDEPtsgL----D~~~~~~i~~~l~~l~~~g~tvi~~~H~ 170 (602)
+|+++.++-.+.+.+- .+|+++++||||+++ |+.....+.+.+++++++|.|+++++|+
T Consensus 96 ~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~ 162 (230)
T PRK08533 96 LSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANP 162 (230)
T ss_pred ccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 6666655544443332 369999999999999 8888899999999998888877776554
No 451
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.95 E-value=6.9e-09 Score=101.50 Aligned_cols=57 Identities=19% Similarity=0.294 Sum_probs=44.1
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhc
Q 007474 121 SIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLS 186 (602)
Q Consensus 121 ~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 186 (602)
+++++|..+|+++++|||. |......+ .+.+..|..++.|+|.++ ..+..||++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~----l~~a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLA----LTAAETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHH----HHHHHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 4778888999999999996 55543333 345567999999999986 457899998874
No 452
>PRK01156 chromosome segregation protein; Provisional
Probab=98.92 E-value=3.3e-09 Score=126.44 Aligned_cols=100 Identities=24% Similarity=0.271 Sum_probs=76.7
Q ss_pred HHHHHHHHHcCCCcc-----cc-----cccC-CCCCCCCChHHHHHHHH------HHHHhhCCcEEEEeCCCCCCCHHHH
Q 007474 85 ERVEALIDQLGLRSA-----AK-----TFIG-DEQHRGVSGGERRRVSI------GIDIIHDPILLFLDEPTSGLDSTSA 147 (602)
Q Consensus 85 ~~v~~~l~~lgL~~~-----~~-----~~vg-~~~~~~LSgGerqRv~i------a~~L~~~p~lllLDEPtsgLD~~~~ 147 (602)
....+++..+|+... .| ...| ...+..||||||+|++| |++++.+|++++|||||+|||+..+
T Consensus 764 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~ 843 (895)
T PRK01156 764 SLTRKYLFEFNLDFDDIDVDQDFNITVSRGGMVEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRR 843 (895)
T ss_pred HHHHHHHHHhCCCccceeecCCeeEEEEeCCccCccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHH
Confidence 355667777887421 00 0011 12456799999999975 4899999999999999999999999
Q ss_pred HHHHHHHHHHHh-c-C-cEEEEEEcCCcHHHHHHhhHHhhhc
Q 007474 148 FKVVKVLGEIAK-S-G-SVVIMSIHQPSYRIFSLLNRLIFLS 186 (602)
Q Consensus 148 ~~i~~~l~~l~~-~-g-~tvi~~~H~~~~~i~~~~D~v~~L~ 186 (602)
..+.+.|+...+ . | .+||++||++. ....||+++.+.
T Consensus 844 ~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~~d~ii~~~ 883 (895)
T PRK01156 844 TNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSVADVAYEVK 883 (895)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEECchH--HHHhcCeEEEEE
Confidence 999999986543 3 3 48999999985 568999999997
No 453
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.91 E-value=9.6e-09 Score=111.51 Aligned_cols=157 Identities=23% Similarity=0.297 Sum_probs=97.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEec---c--------cccccceEEEEccCCcCCCCCCHHHHH--H
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVL---E--------SRLLKIISAYVMQDELLFPMLTVEETL--M 67 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~---~--------~~~~~~~~~yv~Q~~~l~~~lTV~e~l--~ 67 (602)
++|+|+||+|||||+++|+|..++. .|.|.+.|+.- . ...+++.+.+|.+.+. ++.+-. .
T Consensus 161 i~I~G~sG~GKStLl~~I~~~~~~~--~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~-----~~~~r~~~~ 233 (438)
T PRK07721 161 VGIFAGSGVGKSTLMGMIARNTSAD--LNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ-----PALMRIKGA 233 (438)
T ss_pred EEEECCCCCCHHHHHHHHhcccCCC--eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC-----CHHHHHHHH
Confidence 4799999999999999999998754 59999865433 2 1224566788876442 111111 1
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHH-HHHhhCCcEEEEeCC--CCCCCH
Q 007474 68 FSAECRLPRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIG-IDIIHDPILLFLDEP--TSGLDS 144 (602)
Q Consensus 68 f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia-~~L~~~p~lllLDEP--tsgLD~ 144 (602)
+.+ -.+.|.+..-|- ++. .+-| .++ |.+=| |++. +.+.|| |+|+|+
T Consensus 234 ~~a--------------~~iAEyfr~~g~-~Vl--l~~D----slt-----r~A~A~rEis-----l~~ge~P~~~G~dp 282 (438)
T PRK07721 234 YTA--------------TAIAEYFRDQGL-NVM--LMMD----SVT-----RVAMAQREIG-----LAVGEPPTTKGYTP 282 (438)
T ss_pred HHH--------------HHHHHHHHHCCC-cEE--EEEe----ChH-----HHHHHHHHHH-----HhcCCCCccccCCH
Confidence 111 112222222231 110 0000 011 00000 1111 122454 679999
Q ss_pred HHHHHHHHHHHHHHh--cCc-----EEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 145 TSAFKVVKVLGEIAK--SGS-----VVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 145 ~~~~~i~~~l~~l~~--~g~-----tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.....+.++++++.+ +|. ||++.+|+.+. .++|++..+.+|+++.+++..+
T Consensus 283 ~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 283 SVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred HHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 999999999999984 575 99999999873 7899999999999999987654
No 454
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.85 E-value=3.7e-09 Score=129.34 Aligned_cols=76 Identities=20% Similarity=0.303 Sum_probs=66.8
Q ss_pred CCCCCChHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHh
Q 007474 108 QHRGVSGGERRRVSIGIDII----HDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLI 183 (602)
Q Consensus 108 ~~~~LSgGerqRv~ia~~L~----~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 183 (602)
.+..||||||+|++||++++ .+|++++|||||+|||+.++..+.+.|+.+++ +.++|++||++. ....||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhhhHe
Confidence 34579999999999999985 57799999999999999999999999999875 478999999986 467899997
Q ss_pred hhc
Q 007474 184 FLS 186 (602)
Q Consensus 184 ~L~ 186 (602)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 654
No 455
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.84 E-value=2.3e-09 Score=93.53 Aligned_cols=57 Identities=19% Similarity=0.141 Sum_probs=45.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc---ccccceEEEEccCCcCCCCCCHHHHHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES---RLLKIISAYVMQDELLFPMLTVEETLMF 68 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~e~l~f 68 (602)
++|+||||||||||++++. +|++.++|.++.. ...++..++++|+ +++ -|++|||.+
T Consensus 18 v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~ti~~Ni~~ 77 (107)
T cd00820 18 VLITGDSGIGKTELALELI--------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IRLRLNIFL 77 (107)
T ss_pred EEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hhHHhhcee
Confidence 4899999999999999986 4899999998743 3345667788777 443 489999976
No 456
>PRK00064 recF recombination protein F; Reviewed
Probab=98.78 E-value=6.9e-09 Score=110.81 Aligned_cols=78 Identities=18% Similarity=0.342 Sum_probs=64.7
Q ss_pred CCCCChHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHh
Q 007474 109 HRGVSGGERRRVSIGIDII---------HDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLL 179 (602)
Q Consensus 109 ~~~LSgGerqRv~ia~~L~---------~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~ 179 (602)
...+|.||+|++.+|..|+ .+|++++||||+++||+..+..+++.+.++ +..+++|+|++. .+...+
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~~ 346 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADLL 346 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhhh
Confidence 3579999999999999886 799999999999999999999999988754 457899999875 354443
Q ss_pred --hHHhhhcCCce
Q 007474 180 --NRLIFLSHGQT 190 (602)
Q Consensus 180 --D~v~~L~~G~i 190 (602)
++++.+++|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 36777888875
No 457
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.78 E-value=1.8e-08 Score=99.79 Aligned_cols=57 Identities=19% Similarity=0.250 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHhc-CcEEEEEEcCCc
Q 007474 116 ERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKV-LGEIAKS-GSVVIMSIHQPS 172 (602)
Q Consensus 116 erqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~-l~~l~~~-g~tvi~~~H~~~ 172 (602)
|-+|++-....+++|+++++|||.+|+|+.....+... ++.+.+. +.++|++||+++
T Consensus 96 e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 96 ELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred HHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 45555555555678999999999999999999999888 7888775 899999999975
No 458
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=98.75 E-value=1.2e-08 Score=88.94 Aligned_cols=62 Identities=24% Similarity=0.329 Sum_probs=53.9
Q ss_pred hHHHHhhhccccccccCCcccccchHHHHh-hcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 007474 533 KIELLQSMSNVLGRNITGSTCLTTGMKILE-QKGITDISKWKCIWILVAFGFLFRVLFYFTLLFGSKNK 600 (602)
Q Consensus 533 ~~~~~~~~~~~~g~~~~~~~C~~~G~~~L~-~~g~~~~~~w~~~~il~~~~~~f~~l~~~~L~~~~~~k 600 (602)
.++.|+..++.+|... ++|++||+ +||+..+|+|||+||+++|+++|.++.++++.+.+..+
T Consensus 15 ~~q~C~~~Ga~~G~~~------V~G~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~~~~~~e~~~~~~ 77 (103)
T PF06422_consen 15 ANQVCAVVGAQPGSTY------VSGDDYLEESYGYSYSHRWRNFGILIAFWIFFIVLTLLATEFIKFEK 77 (103)
T ss_pred CcCccCCCCCCCCccE------EeHHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 4678888888887653 89999997 79999999999999999999999999999998876443
No 459
>PRK02224 chromosome segregation protein; Provisional
Probab=98.72 E-value=1.5e-08 Score=120.65 Aligned_cols=78 Identities=27% Similarity=0.401 Sum_probs=67.3
Q ss_pred CCCCChHHHH------HHHHHHHHhhC-----C-cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCc-EEEEEEcCCcHHH
Q 007474 109 HRGVSGGERR------RVSIGIDIIHD-----P-ILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGS-VVIMSIHQPSYRI 175 (602)
Q Consensus 109 ~~~LSgGerq------Rv~ia~~L~~~-----p-~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~-tvi~~~H~~~~~i 175 (602)
+..||||||+ |++++++++.+ | +++++||||++||+.....+.+.|+.+.+.|. +||++||++. .
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence 4579999999 89999998864 3 67999999999999999999999999987664 7999999985 4
Q ss_pred HHHhhHHhhhcCC
Q 007474 176 FSLLNRLIFLSHG 188 (602)
Q Consensus 176 ~~~~D~v~~L~~G 188 (602)
...+|+++.+.+.
T Consensus 857 ~~~ad~~~~~~~~ 869 (880)
T PRK02224 857 VGAADDLVRVEKD 869 (880)
T ss_pred HHhcCeeEEeecC
Confidence 5789999999643
No 460
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.71 E-value=1.2e-08 Score=124.79 Aligned_cols=76 Identities=20% Similarity=0.226 Sum_probs=67.8
Q ss_pred CCCCChHHHHHHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhh
Q 007474 109 HRGVSGGERRRVSIGIDIIH----DPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIF 184 (602)
Q Consensus 109 ~~~LSgGerqRv~ia~~L~~----~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~ 184 (602)
+..||||||++++||.+++. .|++++||||++|||+..+..+.++|+++++ +..+|++||++. ....||+++.
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~~ 1148 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAIG 1148 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeEe
Confidence 45799999999999999985 6799999999999999999999999999865 477999999974 6799999987
Q ss_pred hcC
Q 007474 185 LSH 187 (602)
Q Consensus 185 L~~ 187 (602)
+..
T Consensus 1149 ~~~ 1151 (1164)
T TIGR02169 1149 VTM 1151 (1164)
T ss_pred EEE
Confidence 753
No 461
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.68 E-value=2.3e-07 Score=109.45 Aligned_cols=70 Identities=19% Similarity=0.222 Sum_probs=59.0
Q ss_pred HHHHHhhCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHH--HhhHHhhhcCCceee
Q 007474 122 IGIDIIHDPILLFLDEPTSGL-DSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFS--LLNRLIFLSHGQTVY 192 (602)
Q Consensus 122 ia~~L~~~p~lllLDEPtsgL-D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~--~~D~v~~L~~G~iv~ 192 (602)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+++ ++.+ .++.++-....++..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~-d~~~s~i~~~ilen~~t~I~L 752 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLS-DAANSGILDVIVESTATKIFL 752 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHhhCchHHHHHHcCCcceec
Confidence 677788999999999999999 799999999999999988999999999997 4655 456665566666665
No 462
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.67 E-value=7.8e-08 Score=96.86 Aligned_cols=132 Identities=23% Similarity=0.361 Sum_probs=82.7
Q ss_pred EEECCCCCcHHHHHHHHHcCCCCCCceeEEEECC-EecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 2 AILGASGAGKSTLIDALAGRIEKESLKGTVTLNG-AVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 2 ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g-~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
.|.||+|+|||||+-.++=-.. +|.=.+++ .... ....+-|+.-|+ +.
T Consensus 5 ll~g~~G~GKS~lal~la~~va----~G~~~~g~~~~~~---~~~~Vlyi~~Ed------------------------~~ 53 (239)
T cd01125 5 ALVAPGGTGKSSLLLVLALAMA----LGKNLFGGGLKVT---EPGRVVYLSAED------------------------PR 53 (239)
T ss_pred EEEcCCCCCHHHHHHHHHHHHh----cCccccCCccccC---CCceEEEEECCC------------------------CH
Confidence 6899999999999888763221 12111111 1110 122344544222 23
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHH----------------HHhhCCcEEEEeCCCC----
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGI----------------DIIHDPILLFLDEPTS---- 140 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~----------------~L~~~p~lllLDEPts---- 140 (602)
.+..+|+..+.+.+++.+..+... ..+|+.|++.+++ ....+|+++++| |++
T Consensus 54 ~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~ 125 (239)
T cd01125 54 EEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHG 125 (239)
T ss_pred HHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCC
Confidence 344566777777776554433322 2244555554433 335799999999 765
Q ss_pred --CCCHHHHHHHHHHHHHHHhc-CcEEEEEEcCCc
Q 007474 141 --GLDSTSAFKVVKVLGEIAKS-GSVVIMSIHQPS 172 (602)
Q Consensus 141 --gLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~ 172 (602)
.+|+.....+++.|++++++ |.+|+++.|...
T Consensus 126 ~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 126 VSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 47999999999999999864 899999999875
No 463
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.65 E-value=8e-08 Score=103.67 Aligned_cols=141 Identities=22% Similarity=0.200 Sum_probs=95.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|+|+||+|||||+++|+|..++ ..|.|.+.|+.. .+|+|.+....
T Consensus 159 i~I~G~sG~GKTtLl~~Ia~~~~~--~~gvI~~iGerg---------------------~ev~e~~~~~l---------- 205 (432)
T PRK06793 159 IGIFAGSGVGKSTLLGMIAKNAKA--DINVISLVGERG---------------------REVKDFIRKEL---------- 205 (432)
T ss_pred EEEECCCCCChHHHHHHHhccCCC--CeEEEEeCCCCc---------------------ccHHHHHHHHh----------
Confidence 479999999999999999998764 346665555321 35666543211
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHh-------hCCcEEEEeCCCCCCCHHHHHHHHHH
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDII-------HDPILLFLDEPTSGLDSTSAFKVVKV 153 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~-------~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (602)
..-|+.+. ..+ .....-|.|+|+|+..+...+ .++-++++||||...|+. +++-..
T Consensus 206 -----------~~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~ 268 (432)
T PRK06793 206 -----------GEEGMRKS--VVV--VATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIA 268 (432)
T ss_pred -----------hhccccee--EEE--EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHH
Confidence 11122110 011 112358999999999998888 789999999999999996 666666
Q ss_pred HHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCc
Q 007474 154 LGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTP 196 (602)
Q Consensus 154 l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 196 (602)
+.+.-..|.+..+.+|.+ ++++|.-...+|.+...+..
T Consensus 269 ~~e~p~~G~~~~~~s~l~-----~L~ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 269 VKELPIGGKTLLMESYMK-----KLLERSGKTQKGSITGIYTV 306 (432)
T ss_pred hcCCCCCCeeeeeeccch-----hHHHHhccCCCcceEEEEEE
Confidence 666655588888888842 34556555677887665543
No 464
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.62 E-value=1.3e-06 Score=81.87 Aligned_cols=129 Identities=9% Similarity=-0.041 Sum_probs=91.3
Q ss_pred HhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhcccCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 007474 371 QERNIFIRETSYNAYRVSSYVLAHALASIPSMITLSLVFALTTFWAVGLAGGFS--GFLFFFITMFASYWAGTSFMAFVA 448 (602)
Q Consensus 371 ~er~v~~rE~~~~~Y~~~~y~~a~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~--~f~~f~~~~~~~~~~~~~~~~~i~ 448 (602)
.|+..+.|-+..-. +++.|+++|++...-..+++.++..++.+. .|.+.... ..+.+++...+.......++..++
T Consensus 16 r~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~a 93 (152)
T TIGR01248 16 REIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAMA 93 (152)
T ss_pred HHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666665554 788999999999999988888877777754 38876532 222222222333334444555555
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcccccCCCCcccchhhhhccChhHHHHHHHH
Q 007474 449 GFIPNIQIGFTIVVAILGLSLLFCGFYISHDEIPSYWIWFHYVSLVKYPFQGAL 502 (602)
Q Consensus 449 ~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~~~l~ 502 (602)
...++.+. ......+..++++.||.+.|.+++|+|++|+.+++|++|+.+++=
T Consensus 94 ~~~~~~~~-~~~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 94 LRKEGRFA-MEALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHcCCHHH-HHHHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 55566543 334466677888899999999999999999999999999999874
No 465
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.61 E-value=1.8e-07 Score=93.95 Aligned_cols=79 Identities=13% Similarity=0.185 Sum_probs=60.1
Q ss_pred CChHHHHHHHHHHHHhh--CCcEEEEeCCCCC---CCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhc
Q 007474 112 VSGGERRRVSIGIDIIH--DPILLFLDEPTSG---LDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLS 186 (602)
Q Consensus 112 LSgGerqRv~ia~~L~~--~p~lllLDEPtsg---LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 186 (602)
.|.++++.+.....++. +|+++++||||+. +|.....++++.++.++++|.|+++++|+... ..+..+++..+.
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~-~~~~~~~~~~l~ 179 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAF-SEELLSRIRSIC 179 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcC-CHHHHHHHHhhe
Confidence 56788999999999997 9999999999965 44555556666677777789999999998753 344556676777
Q ss_pred CCcee
Q 007474 187 HGQTV 191 (602)
Q Consensus 187 ~G~iv 191 (602)
+|.+.
T Consensus 180 DgvI~ 184 (234)
T PRK06067 180 DVYLK 184 (234)
T ss_pred EEEEE
Confidence 76553
No 466
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.59 E-value=5.9e-07 Score=86.97 Aligned_cols=117 Identities=22% Similarity=0.220 Sum_probs=76.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCC--cCCCCCCHHHHHHHHHHhcCCCCC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDE--LLFPMLTVEETLMFSAECRLPRSV 78 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~--~l~~~lTV~e~l~f~~~~~~~~~~ 78 (602)
++|+||||||||||+++|+|.+++ ..|.|.+++..-.....+..++++.|.+ ...+..|+.+.+..
T Consensus 28 i~I~G~tGSGKTTll~aL~~~i~~--~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------- 95 (186)
T cd01130 28 ILISGGTGSGKTTLLNALLAFIPP--DERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRS---------- 95 (186)
T ss_pred EEEECCCCCCHHHHHHHHHhhcCC--CCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHH----------
Confidence 479999999999999999999875 3589998774322222234455555443 23444555554432
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007474 79 SKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIA 158 (602)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~ 158 (602)
++=.+|+.++++|--. .+ + .+.++. +
T Consensus 96 ----------------------------------------------~lR~~pd~i~igEir~---~e-a---~~~~~a-~ 121 (186)
T cd01130 96 ----------------------------------------------ALRMRPDRIIVGEVRG---GE-A---LDLLQA-M 121 (186)
T ss_pred ----------------------------------------------HhccCCCEEEEEccCc---HH-H---HHHHHH-H
Confidence 2224689999999864 33 2 234443 3
Q ss_pred hcCcE-EEEEEcCCcHHHHHHhhHHhhh
Q 007474 159 KSGSV-VIMSIHQPSYRIFSLLNRLIFL 185 (602)
Q Consensus 159 ~~g~t-vi~~~H~~~~~i~~~~D~v~~L 185 (602)
..|.. ++.|.|-.+ ..+..+|+.-+
T Consensus 122 ~tGh~g~~~T~Ha~s--~~~~~~Rl~~~ 147 (186)
T cd01130 122 NTGHPGGMTTIHANS--AEEALTRLELL 147 (186)
T ss_pred hcCCCCceeeecCCC--HHHHHHHHHHH
Confidence 56777 999999876 56777887655
No 467
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.57 E-value=8.8e-08 Score=102.34 Aligned_cols=60 Identities=20% Similarity=0.312 Sum_probs=55.5
Q ss_pred CCCChHHHHHHHHHHHHhh---------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCc
Q 007474 110 RGVSGGERRRVSIGIDIIH---------DPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPS 172 (602)
Q Consensus 110 ~~LSgGerqRv~ia~~L~~---------~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 172 (602)
..+|.||+|++.||..|+. +|+||+||||+++||+..+..+++.|++. |..|++|+|++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 3689999999999999999 99999999999999999999999999754 779999999875
No 468
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.57 E-value=5.3e-07 Score=95.77 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=45.4
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhc
Q 007474 121 SIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLS 186 (602)
Q Consensus 121 ~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 186 (602)
.++.+|-.+|+++++||+. |+.++...++ .+..|.+|+.|+|..+ .....+|++-|-
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~--~~~~~~Rl~~~~ 243 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNS--AAQTIERIIDVF 243 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCC--HHHHHHHHHHhc
Confidence 3567788899999999997 8888765444 3567999999999976 467889998774
No 469
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.56 E-value=8.6e-07 Score=79.45 Aligned_cols=60 Identities=27% Similarity=0.281 Sum_probs=46.0
Q ss_pred CCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH------HHHHHHhcCcEEEEEEcC
Q 007474 111 GVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVK------VLGEIAKSGSVVIMSIHQ 170 (602)
Q Consensus 111 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~------~l~~l~~~g~tvi~~~H~ 170 (602)
...+++..+..+..+--.+|.++++||+..-.+......... ........+..+|+++|.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 60 SGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 367778888888888877899999999999999988887765 223333456788888884
No 470
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.48 E-value=4e-07 Score=99.68 Aligned_cols=137 Identities=21% Similarity=0.256 Sum_probs=84.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++++||||+||||++..|++.+... +|. +.+++|.+|. ...++.|+|.+.++..- ++.
T Consensus 259 i~LvGpnGvGKTTTiaKLA~~~~~~--~G~--------------~kV~LI~~Dt---~RigA~EQLr~~AeilG---Vpv 316 (484)
T PRK06995 259 FALMGPTGVGKTTTTAKLAARCVMR--HGA--------------SKVALLTTDS---YRIGGHEQLRIYGKILG---VPV 316 (484)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHh--cCC--------------CeEEEEeCCc---cchhHHHHHHHHHHHhC---CCe
Confidence 4799999999999999999976421 131 2367888765 34789999998776541 222
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHH-HHHHHHHHhhCC-----cEEEEeCCCCCCCHHHHHHHHHHH
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERR-RVSIGIDIIHDP-----ILLFLDEPTSGLDSTSAFKVVKVL 154 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq-Rv~ia~~L~~~p-----~lllLDEPtsgLD~~~~~~i~~~l 154 (602)
...+...+...+..++.+..+.+|.. ...+++. .+.-..+++.++ .+|+||.++.+ ..+.+.+
T Consensus 317 ~~~~~~~Dl~~aL~~L~d~d~VLIDT-----aGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~------~~l~~i~ 385 (484)
T PRK06995 317 HAVKDAADLRLALSELRNKHIVLIDT-----IGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG------DTLNEVV 385 (484)
T ss_pred eccCCchhHHHHHHhccCCCeEEeCC-----CCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH------HHHHHHH
Confidence 22223344455666777765555543 2222322 234444555554 68999999987 3445555
Q ss_pred HHHHhcCcEEEEEEcC
Q 007474 155 GEIAKSGSVVIMSIHQ 170 (602)
Q Consensus 155 ~~l~~~g~tvi~~~H~ 170 (602)
+.....+.+-++.|+-
T Consensus 386 ~~f~~~~~~g~IlTKl 401 (484)
T PRK06995 386 QAYRGPGLAGCILTKL 401 (484)
T ss_pred HHhccCCCCEEEEeCC
Confidence 5555556664444553
No 471
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.47 E-value=2.3e-07 Score=110.71 Aligned_cols=85 Identities=28% Similarity=0.391 Sum_probs=72.8
Q ss_pred ccccCCC--CCCCCChHHHHHHHHHHHHh------hC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcC
Q 007474 101 KTFIGDE--QHRGVSGGERRRVSIGIDII------HD--PILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQ 170 (602)
Q Consensus 101 ~~~vg~~--~~~~LSgGerqRv~ia~~L~------~~--p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~ 170 (602)
+...|+. .+..|||||+-.++||.+|+ .+ -++|||||||..||+.....+++.|..+...+.+|+++||+
T Consensus 803 ~~~~~~~~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~ 882 (908)
T COG0419 803 VVYDGGEVRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHV 882 (908)
T ss_pred EEecCCCccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCh
Confidence 3344443 56789999999988888776 35 68999999999999999999999999999889999999999
Q ss_pred CcHHHHHHhhHHhhhcC
Q 007474 171 PSYRIFSLLNRLIFLSH 187 (602)
Q Consensus 171 ~~~~i~~~~D~v~~L~~ 187 (602)
+ +..+.+|.++.+..
T Consensus 883 e--el~e~~~~~i~V~k 897 (908)
T COG0419 883 E--ELKERADVRIRVKK 897 (908)
T ss_pred H--HHHHhCCeEEEEEe
Confidence 6 47889999988865
No 472
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.45 E-value=1.7e-07 Score=91.59 Aligned_cols=112 Identities=15% Similarity=0.181 Sum_probs=65.2
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcCCCCCCH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRLPRSVSK 80 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~~~~~~~ 80 (602)
++|.||||||||||.+.|++.+. . |++ .++.+|+. +..++..+........ ...+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~--~--~~~----------------~v~~~D~~-~~~~~~~~~~~~~~~~---~~~~~ 57 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLG--N--PKV----------------VIISQDSY-YKDLSHEELEERKNNN---YDHPD 57 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--C--CCe----------------EEEEeccc-ccccccccHHHhccCC---CCCCC
Confidence 58999999999999999999862 1 222 23333332 2222333322211100 01111
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 007474 81 KRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDS 144 (602)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~ 144 (602)
....+...+.++.+...+..+..+- ..|.|++++..+ .+.+|+++++|+|..+.++
T Consensus 58 ~~~~~~~~~~l~~l~~~~~~~~p~~-----d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 58 AFDFDLLISHLQDLKNGKSVEIPVY-----DFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred cccHHHHHHHHHHHHCCCCEecccc-----ccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 1222344566666665543333333 377777766555 5688999999999999986
No 473
>PRK14079 recF recombination protein F; Provisional
Probab=98.43 E-value=2e-07 Score=99.15 Aligned_cols=74 Identities=16% Similarity=0.240 Sum_probs=61.5
Q ss_pred CCChHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhH
Q 007474 111 GVSGGERRRVSIGIDII---------HDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNR 181 (602)
Q Consensus 111 ~LSgGerqRv~ia~~L~---------~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~ 181 (602)
-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|.+. ..++|.+++.| ..+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~-----~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAP-----PGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCC-----CCCce
Confidence 58999999999999999 899999999999999999999999888653 24555555544 36899
Q ss_pred HhhhcCCceee
Q 007474 182 LIFLSHGQTVY 192 (602)
Q Consensus 182 v~~L~~G~iv~ 192 (602)
++.+.+|++.-
T Consensus 335 ~~~~~~~~~~~ 345 (349)
T PRK14079 335 TLRIEAGVFTP 345 (349)
T ss_pred EEEEeccEecC
Confidence 99999887643
No 474
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.26 E-value=1.2e-06 Score=107.79 Aligned_cols=59 Identities=25% Similarity=0.397 Sum_probs=52.3
Q ss_pred CCCCChHHHHHHH----HHHH--------HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcC
Q 007474 109 HRGVSGGERRRVS----IGID--------IIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQ 170 (602)
Q Consensus 109 ~~~LSgGerqRv~----ia~~--------L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~ 170 (602)
..+||||||||+. +|++ +..+|++++|||||+|||+.++..++++++++ |.++|+++|.
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~ 1315 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSER 1315 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccc
Confidence 4679999999996 5644 55899999999999999999999999999987 7889999886
No 475
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.24 E-value=1.8e-08 Score=111.70 Aligned_cols=82 Identities=11% Similarity=0.195 Sum_probs=60.2
Q ss_pred HHHHcCCCcccccccCCCCCCCCChHHHHHHHHH--HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEE
Q 007474 90 LIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIG--IDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMS 167 (602)
Q Consensus 90 ~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia--~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~ 167 (602)
+++.+++.+..+.... .+|+|++|||.|+ .+|..+|+.. ...+..+.++++.+++.|+|+|++
T Consensus 99 ~~~~~~l~~~l~~i~~-----~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLt 163 (484)
T TIGR02655 99 VVGGFDLSALIERINY-----AIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMT 163 (484)
T ss_pred ccccCCHHHHHHHHHH-----HHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEE
Confidence 3445555555555544 4999999999999 6666666433 567788999999998899999999
Q ss_pred EcCCcHH-------H-HHHhhHHhhhc
Q 007474 168 IHQPSYR-------I-FSLLNRLIFLS 186 (602)
Q Consensus 168 ~H~~~~~-------i-~~~~D~v~~L~ 186 (602)
+|++... + ..++|.|+.|+
T Consensus 164 sh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 164 TERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred ecCcccccccccCCceeEeeeeEEEEE
Confidence 9987520 1 44778888876
No 476
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.22 E-value=9.5e-06 Score=95.64 Aligned_cols=52 Identities=21% Similarity=0.200 Sum_probs=45.9
Q ss_pred HHhhCCcEEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHH
Q 007474 125 DIIHDPILLFLDEPTSGLD-STSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFS 177 (602)
Q Consensus 125 ~L~~~p~lllLDEPtsgLD-~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~ 177 (602)
.+..+|.++++|||...|| +..+..+.+.++.+++.|..++++||+|+. +..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d-~~~ 690 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED-ASK 690 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHh
Confidence 3456899999999999999 889999999999999889999999999874 544
No 477
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.18 E-value=3e-06 Score=99.89 Aligned_cols=68 Identities=22% Similarity=0.178 Sum_probs=49.9
Q ss_pred CCChHHHHHHHHHHHHh--hCCcEEEEeCC---CCCCCHHHHHHHHHHHHHHHhc-CcEEEEEEcCCcHHHHHHhhHH
Q 007474 111 GVSGGERRRVSIGIDII--HDPILLFLDEP---TSGLDSTSAFKVVKVLGEIAKS-GSVVIMSIHQPSYRIFSLLNRL 182 (602)
Q Consensus 111 ~LSgGerqRv~ia~~L~--~~p~lllLDEP---tsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v 182 (602)
|.|-=+.....++..|- ++++++++||| |+.+|..+ .....++.+.+. |.+++++||.. ++.+++++.
T Consensus 666 g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~~ 739 (854)
T PRK05399 666 GRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEKL 739 (854)
T ss_pred CcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhhc
Confidence 46665555666666554 48999999999 88899443 455677777765 58899999994 578888763
No 478
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.17 E-value=1.7e-05 Score=93.56 Aligned_cols=67 Identities=22% Similarity=0.180 Sum_probs=52.8
Q ss_pred HhhCCcEEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHH--HhhHHhhhcCCceeec
Q 007474 126 IIHDPILLFLDEPTSGLD-STSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFS--LLNRLIFLSHGQTVYS 193 (602)
Q Consensus 126 L~~~p~lllLDEPtsgLD-~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~--~~D~v~~L~~G~iv~~ 193 (602)
+-.+|+++++|||+.+|| +..+..+.+.++.+++.|.+++++||+|. ++.+ .++.++-...-++...
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~-d~~~s~~~~~il~n~~t~i~L~ 701 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA-DIDGSAIAPAIIESCPTRIFLP 701 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHhcCchHHHHHHhCCeeEEcC
Confidence 345899999999999999 78899999999999988999999999987 3543 3455555555555543
No 479
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=98.16 E-value=0.00093 Score=68.14 Aligned_cols=95 Identities=16% Similarity=0.205 Sum_probs=57.5
Q ss_pred HHHHHHhcCC--------CCChHHHHHHHHHHHHHHHHH--HHHhHh--h-hhhc-ccCCCCchHHHHHHHHHHHHHHH-
Q 007474 374 NIFIRETSYN--------AYRVSSYVLAHALASIPSMIT--LSLVFA--L-TTFW-AVGLAGGFSGFLFFFITMFASYW- 438 (602)
Q Consensus 374 ~v~~rE~~~~--------~Y~~~~y~~a~~l~~lP~~~~--~~~if~--~-i~Y~-~~gl~~~~~~f~~f~~~~~~~~~- 438 (602)
..+.+|+++| -++...++++|.++.+...++ ...+.+ + ..++ ..|.+.+...++...+...+..+
T Consensus 88 ~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (277)
T PF12679_consen 88 DLIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLA 167 (277)
T ss_pred HHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence 3556676666 468899999999999877432 111111 1 1122 23445555555544443333333
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 007474 439 --AGTSFMAFVAGFIPNIQIGFTIVVAILGLS 468 (602)
Q Consensus 439 --~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ 468 (602)
+..+++.++|+++.+...|..++..+....
T Consensus 168 ~~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~ 199 (277)
T PF12679_consen 168 VLVFISLGLLISSLFRSSASAILASLGLLFLL 199 (277)
T ss_pred HHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence 458899999999998887777666554443
No 480
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.15 E-value=4.6e-06 Score=70.91 Aligned_cols=47 Identities=32% Similarity=0.496 Sum_probs=36.6
Q ss_pred CCCChHHH-HHHHHHHHHh------h------CCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007474 110 RGVSGGER-RRVSIGIDII------H------DPILLFLDEPTSGLDSTSAFKVVKVLGE 156 (602)
Q Consensus 110 ~~LSgGer-qRv~ia~~L~------~------~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (602)
.++||||| ..+.++.+++ . .|++++||||+++||+..+..++++|++
T Consensus 31 ~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 31 GTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 46999999 4454444333 2 3799999999999999999999999875
No 481
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.14 E-value=2.5e-05 Score=75.47 Aligned_cols=67 Identities=12% Similarity=0.106 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCC-cccccccCCCCCCCCChHHHHHHH--HHHHHhh-CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007474 85 ERVEALIDQLGLR-SAAKTFIGDEQHRGVSGGERRRVS--IGIDIIH-DPILLFLDEPTSGLDSTSAFKVVKVLGEIAKS 160 (602)
Q Consensus 85 ~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~--ia~~L~~-~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~ 160 (602)
.++.+.++..++. -...+++. .+++||++++. +++.+-. ++++ .|+|++|.....++.+.|.++.++
T Consensus 125 ~~i~~~l~~~~~~~iiv~nK~D-----l~~~~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 125 LQMIEWLKEYGIPVLIVLTKAD-----KLKKGERKKQLKKVRKALKFGDDEV----ILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHHcCCcEEEEEECcc-----cCCHHHHHHHHHHHHHHHHhcCCce----EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3455666666654 22233333 48999999977 5555443 3443 399999999999999999988765
No 482
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.07 E-value=0.0017 Score=65.55 Aligned_cols=187 Identities=15% Similarity=0.077 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcC---CC-CChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhH
Q 007474 299 LFLSKRSNTNSRRMPELFGTRLGAQLVIACVLATLYWQ---LD-DSPKGTRLRLAFVAFAMTTIFYNCAREIPALLQERN 374 (602)
Q Consensus 299 ~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~---~~-~~~~~~~~~~g~~f~~~~~~~~~~~~~i~~~~~er~ 374 (602)
+.+.+|+++...|.|..+..-.+..++.|+.. ..|.. .. .+..+.+.-.+.. ...+.+. +|.. -..
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~~--~~~~~~~-----~p~l--~~~ 71 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSLA--PWVFLFL-----IPAI--TMR 71 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHHH--HHHHHHH-----HHHH--HHH
Confidence 46789999999999999987777777766442 22211 11 1111121111110 1111111 1111 124
Q ss_pred HHHHHhcCCCC--------ChHHHHHHHHHHHHHHHHHHHH---hHhhhhhcccCCC---CchHHHHHHHHHHHHHHHHH
Q 007474 375 IFIRETSYNAY--------RVSSYVLAHALASIPSMITLSL---VFALTTFWAVGLA---GGFSGFLFFFITMFASYWAG 440 (602)
Q Consensus 375 v~~rE~~~~~Y--------~~~~y~~a~~l~~lP~~~~~~~---if~~i~Y~~~gl~---~~~~~f~~f~~~~~~~~~~~ 440 (602)
.+.+||++|.. +...+.++|.++-.-..++..+ ++....++. |.+ .+.+.++...+..++...+.
T Consensus 72 ~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (240)
T TIGR03518 72 SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQL-GNPVGNLDIGSTFGSYIGLLLLGSVY 150 (240)
T ss_pred HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCccccccHHHHHHHHHHHHHHHHHH
Confidence 55677777743 5678899999988755443322 222222221 222 23445544444445555677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCc--ccchhhhhccChhHHHHH
Q 007474 441 TSFMAFVAGFIPNIQIGFTIVVAILGLSLLFCGFYISHDEI--PSYWIWFHYVSLVKYPFQ 499 (602)
Q Consensus 441 ~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~i--p~~~~Wl~yiSp~~y~~~ 499 (602)
.++|.++|+++.+...|..++..+.. .++.|+.. ..++ |++.+|+.|+||..|-.+
T Consensus 151 ~aig~~iSsl~~~q~~a~~~~~~~~~--~l~~~~~~-l~~~~~~~~~~~l~~~sp~~~~~~ 208 (240)
T TIGR03518 151 TAIGLFASSLTENQIVAFIIAVFLCF--LFYFGFDG-LASLLWGGSAYTISELGLSYHYES 208 (240)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHH--HHHHHHHH-HhhhcchhHHHHHHHcCHHHHHHH
Confidence 89999999999998877655433322 22222211 2334 788899999999777543
No 483
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.03 E-value=0.0025 Score=65.07 Aligned_cols=206 Identities=11% Similarity=0.072 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHhhcChHHHH-HHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHH-HHHH-H-HhHHHHH
Q 007474 294 FWTEMLFLSKRSNTNSRRMPELFG-TRLGAQLVIACVLATLYWQLDDSPKGTRLRLAFVAFAMTT-IFYN-C-AREIPAL 369 (602)
Q Consensus 294 ~~~q~~~L~~R~~~~~~Rd~~~~~-~r~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~~f~~~~~-~~~~-~-~~~i~~~ 369 (602)
.++.++.|.+|+.+...|+..+-. --++..+++.++++.+|-.+-... ..+....++..+.. .+++ + ......+
T Consensus 16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~--~~~~~~~l~~G~~~w~f~~~~i~~~~~s~ 93 (263)
T COG1682 16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSP--GLNFLAYLLAGLILWFFFSEAISEGAGSV 93 (263)
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 467788899999999888874332 223333444444444442221111 11111112221111 1121 1 2233444
Q ss_pred HHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007474 370 LQERNIFIRETSYNAYRVSSYVLAHALASIPSMITLSLVFALTTFWAVGLAGGFSGFLFFFITMFASYWAGTSFMAFVAG 449 (602)
Q Consensus 370 ~~er~v~~rE~~~~~Y~~~~y~~a~~l~~lP~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~i~~ 449 (602)
.+...++.|-+ ..++.+.+++++.++--..+..++....+-+.-+.. ...+..+...+.+..+.+.++++++|.
T Consensus 94 ~~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~--s~~~l~~~~~l~~l~l~~~g~~l~~a~ 167 (263)
T COG1682 94 VANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP--SWHWLLLLPALLLLILFSVGLGLILAS 167 (263)
T ss_pred hhhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44545544322 278899999999998766655555444444433333 334444444555556666777888877
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcccccCCCCcccchhhhhccChhHHHHHHHHhhhhC
Q 007474 450 FIPNIQIGFTIVVAILGLSLLFCGFYISHDEIPSYWIWFHYVSLVKYPFQGALQNEYG 507 (602)
Q Consensus 450 ~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~~~l~~nef~ 507 (602)
+..-+.--..+.+.++-+++..+|.+=+.+++|.-++|+.++||+.+-.|.+=..-++
T Consensus 168 l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~ 225 (263)
T COG1682 168 LGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLG 225 (263)
T ss_pred HhhhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhC
Confidence 7654433334555667788889999999999999999999999999999988555554
No 484
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.02 E-value=5.6e-07 Score=89.90 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=22.6
Q ss_pred CEEECCCCCcHHHHHHHHH--cCCCCCCceeEEEECCE
Q 007474 1 MAILGASGAGKSTLIDALA--GRIEKESLKGTVTLNGA 36 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~--G~~~~~~~~G~i~~~g~ 36 (602)
++|.||+|+|||||...++ +.. ++ ++-+++...
T Consensus 23 ~~i~G~~G~GKT~l~~~~~~~~~~-~g--~~~~~is~e 57 (229)
T TIGR03881 23 VAVTGEPGTGKTIFCLHFAYKGLR-DG--DPVIYVTTE 57 (229)
T ss_pred EEEECCCCCChHHHHHHHHHHHHh-cC--CeEEEEEcc
Confidence 4689999999999988655 432 22 245666653
No 485
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.01 E-value=1.2e-05 Score=74.78 Aligned_cols=64 Identities=14% Similarity=0.116 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCCc-ccccccCCCCCCCCChHHHHHHHHHHHH-----hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007474 85 ERVEALIDQLGLRS-AAKTFIGDEQHRGVSGGERRRVSIGIDI-----IHDPILLFLDEPTSGLDSTSAFKVVKVLGEI 157 (602)
Q Consensus 85 ~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L-----~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (602)
.++.+.++..+..- ...+++ ..++++++++.....+. ...|+++ |+|++|.....++.+.|.++
T Consensus 100 ~~~~~~l~~~~~~vi~v~nK~-----D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 100 LEMLDWLEELGIPFLVVLTKA-----DKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHHcCCCEEEEEEch-----hcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 44556666665331 122222 23788888877666553 2345555 99999999999999988764
No 486
>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional
Probab=97.94 E-value=0.0052 Score=62.89 Aligned_cols=69 Identities=14% Similarity=0.205 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhcccccCCCCcccchhhhhccChhHHHHHHHHhhhhC
Q 007474 436 SYWAGTSFMAFVAGF---IPNIQIGFTIVVAILGLSLLFCGFYISHDEIPSYWIWFHYVSLVKYPFQGALQNEYG 507 (602)
Q Consensus 436 ~~~~~~~~~~~i~~~---~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~~~l~~nef~ 507 (602)
..+.+.++|+++|++ .++.+. +.+.++.+++..+|.+-+.+.+|++++|+.+.||+.+..|+.=..-++
T Consensus 158 ~~l~~~glglils~l~v~~rDi~~---i~~~~l~~lf~~SpI~y~~~~vp~~~~~il~~NPl~~~ie~~R~~~~~ 229 (264)
T PRK15176 158 AWLLGLSFGYFCDALSERFPLVYK---AVPVMLRPMFLISAVFYTANELPYSLLSIFSWNPLLHANEIVREGMFE 229 (264)
T ss_pred HHHHHHHHHHHHHHHHHhCccHHH---HHHHHHHHHHHHhhHhhhHHhCcHHHHHHHHHCcHHHHHHHHHHHHhc
Confidence 444455666666655 455543 445667778888999889999999999999999999999988555553
No 487
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.94 E-value=4.3e-06 Score=80.22 Aligned_cols=62 Identities=21% Similarity=0.316 Sum_probs=41.3
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecccc-ccc-ceEEEEccCCcCCCCCCHHHHHHH
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLESR-LLK-IISAYVMQDELLFPMLTVEETLMF 68 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~~-~~~-~~~~yv~Q~~~l~~~lTV~e~l~f 68 (602)
++|+|+||||||||+++|+|++.+ +.++|.++... ..+ ...++.+|+...++.+++.++..+
T Consensus 6 i~l~G~sGsGKSTl~~~la~~l~~------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 6 YILMGVSGSGKSLIGSKIAALFSA------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCC------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 479999999999999999998753 46777765431 111 124566666555555556555544
No 488
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.94 E-value=1.3e-05 Score=98.22 Aligned_cols=35 Identities=34% Similarity=0.617 Sum_probs=28.9
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCE
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGA 36 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~ 36 (602)
++|.|++|+|||||++++++.... ..+|.+.+++.
T Consensus 210 vgI~G~gGiGKTTLA~~l~~~l~~-~F~g~vfv~~~ 244 (1153)
T PLN03210 210 VGIWGSSGIGKTTIARALFSRLSR-QFQSSVFIDRA 244 (1153)
T ss_pred EEEEcCCCCchHHHHHHHHHHHhh-cCCeEEEeecc
Confidence 589999999999999999887653 34699988763
No 489
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.92 E-value=2.8e-05 Score=88.72 Aligned_cols=108 Identities=23% Similarity=0.324 Sum_probs=67.4
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCC------ceeEEEECCEecccccccceEEEEccCCcCCCCCCHHHHHHHHHHhcC
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKES------LKGTVTLNGAVLESRLLKIISAYVMQDELLFPMLTVEETLMFSAECRL 74 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~------~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~~ 74 (602)
++|+||||+|||||++++.+..++.. ..+-+.+||..+.. ..+. + ++-.+.
T Consensus 178 vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~-d~~~----------------i-~~~llg----- 234 (615)
T TIGR02903 178 IILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRW-DPRE----------------V-TNPLLG----- 234 (615)
T ss_pred EEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccC-CHHH----------------H-hHHhcC-----
Confidence 47899999999999999998764211 11235555543210 0000 0 011111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCChHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 007474 75 PRSVSKKRKRERVEALIDQLGLRSAAKTFIGDEQHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVL 154 (602)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (602)
.. .+...+...+.++..|+.+..+..+. .+||| +||||| +..||+..+..+.+.|
T Consensus 235 --~~-~~~~~~~a~~~l~~~gl~~~~~g~v~-----~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~L 289 (615)
T TIGR02903 235 --SV-HDPIYQGARRDLAETGVPEPKTGLVT-----DAHGG----------------VLFIDE-IGELDPLLQNKLLKVL 289 (615)
T ss_pred --Cc-cHHHHHHHHHHHHHcCCCchhcCchh-----hcCCC----------------eEEEec-cccCCHHHHHHHHHHH
Confidence 01 11122345556788888776655544 48888 999999 8999999999998888
Q ss_pred HH
Q 007474 155 GE 156 (602)
Q Consensus 155 ~~ 156 (602)
++
T Consensus 290 e~ 291 (615)
T TIGR02903 290 ED 291 (615)
T ss_pred hh
Confidence 75
No 490
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.91 E-value=8e-05 Score=81.76 Aligned_cols=70 Identities=16% Similarity=0.314 Sum_probs=54.4
Q ss_pred hCCcEEEEeCCCCCCCHH-HHHHHHHHHHHHHhcCcEEEEEE-cCCcHHHHHHhhHHh-hhcCCceeecCCccc
Q 007474 128 HDPILLFLDEPTSGLDST-SAFKVVKVLGEIAKSGSVVIMSI-HQPSYRIFSLLNRLI-FLSHGQTVYSGTPAT 198 (602)
Q Consensus 128 ~~p~lllLDEPtsgLD~~-~~~~i~~~l~~l~~~g~tvi~~~-H~~~~~i~~~~D~v~-~L~~G~iv~~G~~~~ 198 (602)
.+|++|++|||...+|.. ...++...+..+.++|+.+|+++ |+|. ++-.+.|++. -+..|-++...+|+.
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~-~l~~l~~rL~SR~~~gl~v~i~~pd~ 265 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQ-KLSEFQDRLVSRFQMGLVAKLEPPDE 265 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHH-HHHHHHHHHhhHHhcCceEeeCCCCH
Confidence 379999999999988765 45788899999988888888876 5554 5666777765 467788888887764
No 491
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.80 E-value=4.8e-05 Score=82.97 Aligned_cols=62 Identities=19% Similarity=0.219 Sum_probs=50.7
Q ss_pred EEeCC--CCCCCHHHHHHHHHHHHHHHhcCc-------EEEEEEcCCcHHHHHHhhHHhhhcCCceeecCCccc
Q 007474 134 FLDEP--TSGLDSTSAFKVVKVLGEIAKSGS-------VVIMSIHQPSYRIFSLLNRLIFLSHGQTVYSGTPAT 198 (602)
Q Consensus 134 lLDEP--tsgLD~~~~~~i~~~l~~l~~~g~-------tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 198 (602)
.+.|| +.|+|+.....+-+++.+....+. ||++..|+.. ..++|++.-+.+|+++.+...++
T Consensus 275 ~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 275 AAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN---EPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred hcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC---cchhhhhccccceEEEEecchhh
Confidence 34675 459999999999999999887666 7888888874 35789999999999999887654
No 492
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.80 E-value=0.00011 Score=78.30 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=37.5
Q ss_pred HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcHHHHHHhhHHhhhc
Q 007474 125 DIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSYRIFSLLNRLIFLS 186 (602)
Q Consensus 125 ~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 186 (602)
+|=.+|+++++.|-- |.+++...++ .+..|..|+.|.|-.+ +.+..+|++-+-
T Consensus 208 aLR~~Pd~i~vGEiR---d~et~~~al~----aa~tGh~v~tTlHa~~--~~~~i~Rl~~~~ 260 (358)
T TIGR02524 208 ALRRKPHAILVGEAR---DAETISAALE----AALTGHPVYTTLHSSG--VAETIRRLVGSF 260 (358)
T ss_pred HhccCCCEEeeeeeC---CHHHHHHHHH----HHHcCCcEEEeeccCC--HHHHHHHHHHhC
Confidence 445689999999843 5555444333 3456888999999875 678888887664
No 493
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=97.79 E-value=4.6e-06 Score=86.74 Aligned_cols=126 Identities=21% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHhhH--HHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhcccC---CCCchHHHHHHHHHHHHHHHHHHHHH
Q 007474 370 LQERN--IFIRETSYNAYRVSSYVLAHALASIPSMITLSLVFALTTFWAVG---LAGGFSGFLFFFITMFASYWAGTSFM 444 (602)
Q Consensus 370 ~~er~--v~~rE~~~~~Y~~~~y~~a~~l~~lP~~~~~~~if~~i~Y~~~g---l~~~~~~f~~f~~~~~~~~~~~~~~~ 444 (602)
..||. +..|-+.+| -+...|++++++..+...++..+++..+ +.| +... .++..++.+++..++..+++
T Consensus 183 ~~ek~~~~~~~l~~~~-~~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~ 256 (344)
T PF12698_consen 183 VEEKESGTRERLLSSG-VSPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPFG--NFLLLLLLLLLFSLAFISFG 256 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHhhhhhhHhhhccc-CCHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCccc--chHHHHHHHHHHHHHHHHHH
Confidence 44443 444444555 4888999999999999988888776664 334 4433 45555566677778888999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCcccchhhhhccChhHHHHHHH
Q 007474 445 AFVAGFIPNIQIGFTIVVAILGLSLLFCGFYISHDEIPSYWIWFHYVSLVKYPFQGA 501 (602)
Q Consensus 445 ~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~~~l 501 (602)
.+++.++++...|..+++++..+++.++|.+.+.+++|++++|+.++.|..|..+++
T Consensus 257 ~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~ 313 (344)
T PF12698_consen 257 FLISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPSFLQWISSFLPFYWFIQGL 313 (344)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhHHHHHHHH
Confidence 999999999988888877777766667777778899999999999999999987665
No 494
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.79 E-value=8.1e-05 Score=67.20 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----cCcEEEEEEcCCc
Q 007474 117 RRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAK-----SGSVVIMSIHQPS 172 (602)
Q Consensus 117 rqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~-----~g~tvi~~~H~~~ 172 (602)
++..........++.++++||.-.. +......+.+.+..... .+..+|++++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3444455566678999999998765 56667778888887753 4678888888654
No 495
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.76 E-value=1.3e-05 Score=82.59 Aligned_cols=71 Identities=14% Similarity=0.140 Sum_probs=47.5
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEe---cccccccceEEEEccCCcCCCCCCHHHHHHHHHHhc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKGTVTLNGAV---LESRLLKIISAYVMQDELLFPMLTVEETLMFSAECR 73 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~---~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~f~~~~~ 73 (602)
+||.||||||||||+++|.+++...+.+|+|.+-+.+ .+.. .++..++. |+..+.+.+++.+.+.+...++
T Consensus 65 IGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~-~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 65 ISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQ-VLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHH-HHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 5899999999999999999988632334776664433 2211 12223443 6666778888888887766554
No 496
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.76 E-value=8.1e-06 Score=79.08 Aligned_cols=72 Identities=21% Similarity=0.221 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEcCCcH-HHHHHhhHHhhhcC
Q 007474 114 GGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIHQPSY-RIFSLLNRLIFLSH 187 (602)
Q Consensus 114 gGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~-~i~~~~D~v~~L~~ 187 (602)
-|+-.|..||..+..+|+.+..+| +.+||....++.+.+++..++|.+|++.+|.... .....||++++++.
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~ 132 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDV 132 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEEC
Confidence 378899999999999999988887 8899999999999999887667899999998731 25667887766543
No 497
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=97.73 E-value=2.5e-05 Score=84.62 Aligned_cols=36 Identities=25% Similarity=0.382 Sum_probs=29.6
Q ss_pred CEEECCCCCcHHHHHHHHHcCCCCCCcee-EEEECCEeccc
Q 007474 1 MAILGASGAGKSTLIDALAGRIEKESLKG-TVTLNGAVLES 40 (602)
Q Consensus 1 ~ai~GpsGaGKSTLL~~l~G~~~~~~~~G-~i~~~g~~~~~ 40 (602)
++|+|||||||||||+ +|+..+. +| +|.++|.++..
T Consensus 35 v~L~G~SGsGKSTLLr--~~l~~~~--sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 35 LFLCGSSGDGKSEILA--ENKRKFS--EGYEFFLDATHSFS 71 (504)
T ss_pred EEEECCCCCCHHHHHh--cCCCCCC--CCCEEEECCEECCC
Confidence 5899999999999999 6776643 35 89999998753
No 498
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.72 E-value=8.5e-06 Score=77.20 Aligned_cols=59 Identities=29% Similarity=0.443 Sum_probs=38.6
Q ss_pred ECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEeccc-c-cccceEEEEccCCcCCCCCCHHHHHHH
Q 007474 4 LGASGAGKSTLIDALAGRIEKESLKGTVTLNGAVLES-R-LLKIISAYVMQDELLFPMLTVEETLMF 68 (602)
Q Consensus 4 ~GpsGaGKSTLL~~l~G~~~~~~~~G~i~~~g~~~~~-~-~~~~~~~yv~Q~~~l~~~lTV~e~l~f 68 (602)
||+||||||||++.|++++ |.+.++|..... . ..+...|+++|+....+.+++.++..+
T Consensus 1 ~G~sGsGKSTla~~la~~l------~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 61 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL------HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAF 61 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh------CCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHH
Confidence 7999999999999999986 456777743321 1 112234677777555555555555544
No 499
>PRK13764 ATPase; Provisional
Probab=97.71 E-value=8.1e-05 Score=83.75 Aligned_cols=64 Identities=20% Similarity=0.372 Sum_probs=48.7
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEc---------------CCcHHHHHHhhHHhhhcCCce
Q 007474 126 IIHDPILLFLDEPTSGLDSTSAFKVVKVLGEIAKSGSVVIMSIH---------------QPSYRIFSLLNRLIFLSHGQT 190 (602)
Q Consensus 126 L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H---------------~~~~~i~~~~D~v~~L~~G~i 190 (602)
|..+|+++++||.-..-| ++.+..++..|..++.|.| +.. .+.+.+|+++.+++|++
T Consensus 321 LR~rPD~IivGEiRd~Et-------~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~lg-~i~~iID~IV~I~~G~I 392 (602)
T PRK13764 321 LLVRPDYTIYDEMRKTED-------FKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVELG-MIPQIVDTVIFIEDGEV 392 (602)
T ss_pred HhhCCCEEEECCCCCHHH-------HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhhc-hHHHhhcEEEEEeCCEE
Confidence 678999999999985322 4455555556788999999 655 47778999999999999
Q ss_pred --eecCCcc
Q 007474 191 --VYSGTPA 197 (602)
Q Consensus 191 --v~~G~~~ 197 (602)
+|.+...
T Consensus 393 ~~v~~~~~~ 401 (602)
T PRK13764 393 SKVYDLEFT 401 (602)
T ss_pred EEEEeeeeE
Confidence 7776543
No 500
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=97.69 E-value=0.0009 Score=67.28 Aligned_cols=52 Identities=23% Similarity=0.402 Sum_probs=37.7
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHh-cCcEEEEEEcCCcHHHHHHhh
Q 007474 127 IHDPILLFLDEPTSGLDSTSAFKVVK-VLGEIAK-SGSVVIMSIHQPSYRIFSLLN 180 (602)
Q Consensus 127 ~~~p~lllLDEPtsgLD~~~~~~i~~-~l~~l~~-~g~tvi~~~H~~~~~i~~~~D 180 (602)
+++..++++||+-.|=++.....+.. .++.+.+ .+..++++||..+ +.+..+
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~--l~~~~~ 173 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHE--LAELLE 173 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GG--GGGHHH
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccch--hHHHhh
Confidence 45668999999999999998887765 5566777 4888999999974 444444
Done!