Query 007475
Match_columns 602
No_of_seqs 318 out of 1359
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 00:06:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007475.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007475hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02869 fatty aldehyde decarb 100.0 6E-198 1E-202 1602.3 45.2 568 1-589 1-570 (620)
2 PF12076 Wax2_C: WAX2 C-termin 100.0 2.1E-56 4.6E-61 419.8 9.0 119 466-589 1-119 (164)
3 KOG0873 C-4 sterol methyl oxid 100.0 1.7E-33 3.6E-38 286.1 14.0 215 50-277 35-260 (283)
4 COG3000 ERG3 Sterol desaturase 99.9 7.7E-27 1.7E-31 239.2 15.7 152 127-287 94-247 (271)
5 KOG0872 Sterol C5 desaturase [ 99.9 1.7E-23 3.6E-28 211.1 11.0 145 125-283 125-269 (312)
6 KOG0874 Sphingolipid hydroxyla 99.8 8.7E-22 1.9E-26 193.5 2.4 145 128-282 122-271 (287)
7 PF04116 FA_hydroxylase: Fatty 99.7 2.5E-17 5.4E-22 145.1 7.6 111 134-254 3-114 (114)
8 PLN02434 fatty acid hydroxylas 99.1 1.2E-09 2.7E-14 110.8 15.2 136 128-277 83-230 (237)
9 PRK14982 acyl-ACP reductase; P 98.3 5E-06 1.1E-10 88.9 10.8 196 357-568 35-264 (340)
10 KOG0539 Sphingolipid fatty aci 98.0 1.9E-05 4.1E-10 78.7 8.0 137 129-278 84-234 (240)
11 PLN02601 beta-carotene hydroxy 97.5 0.0006 1.3E-08 70.5 9.6 132 118-265 126-272 (303)
12 PRK07424 bifunctional sterol d 97.2 0.0014 3.1E-08 71.8 9.0 131 138-276 18-175 (406)
13 cd01078 NAD_bind_H4MPT_DH NADP 95.1 0.018 3.9E-07 56.1 3.5 51 446-498 2-61 (194)
14 COG5322 Predicted dehydrogenas 94.8 0.22 4.8E-06 52.4 10.4 100 390-494 87-196 (351)
15 PF10520 Kua-UEV1_localn: Kua- 93.1 0.18 3.9E-06 49.9 5.7 55 215-274 99-156 (178)
16 PF13460 NAD_binding_10: NADH( 92.3 0.29 6.3E-06 46.1 5.9 31 466-498 1-31 (183)
17 COG4221 Short-chain alcohol de 91.8 0.22 4.9E-06 51.5 4.8 44 464-509 7-52 (246)
18 PRK09186 flagellin modificatio 90.2 0.62 1.3E-05 46.1 6.1 31 464-496 5-35 (256)
19 PRK06482 short chain dehydroge 90.1 0.48 1E-05 47.8 5.3 42 463-506 2-45 (276)
20 PLN03209 translocon at the inn 89.7 0.6 1.3E-05 53.8 6.3 60 434-495 40-110 (576)
21 TIGR01832 kduD 2-deoxy-D-gluco 89.2 0.54 1.2E-05 46.4 4.8 35 463-499 5-39 (248)
22 PRK07454 short chain dehydroge 88.8 1 2.2E-05 44.3 6.4 33 463-497 6-38 (241)
23 KOG1014 17 beta-hydroxysteroid 88.8 0.4 8.8E-06 51.1 3.8 42 464-507 50-93 (312)
24 COG0300 DltE Short-chain dehyd 88.6 0.68 1.5E-05 48.5 5.2 47 461-509 4-52 (265)
25 PRK08264 short chain dehydroge 88.3 0.51 1.1E-05 46.2 3.9 33 464-498 7-40 (238)
26 PRK08265 short chain dehydroge 88.2 0.7 1.5E-05 46.5 4.9 33 464-498 7-39 (261)
27 PRK06924 short chain dehydroge 88.2 0.62 1.4E-05 46.0 4.5 32 464-497 2-33 (251)
28 PRK06841 short chain dehydroge 88.0 0.6 1.3E-05 46.2 4.2 35 463-499 15-49 (255)
29 PRK05867 short chain dehydroge 87.9 0.87 1.9E-05 45.3 5.3 34 462-497 8-41 (253)
30 PRK06196 oxidoreductase; Provi 87.8 0.94 2E-05 47.1 5.7 43 452-496 15-57 (315)
31 PRK07577 short chain dehydroge 87.8 0.56 1.2E-05 45.7 3.8 33 464-498 4-36 (234)
32 PRK12825 fabG 3-ketoacyl-(acyl 87.3 0.79 1.7E-05 44.5 4.6 29 464-494 7-35 (249)
33 PRK05557 fabG 3-ketoacyl-(acyl 86.9 1.1 2.3E-05 43.7 5.2 29 464-494 6-34 (248)
34 TIGR03649 ergot_EASG ergot alk 86.9 0.59 1.3E-05 47.6 3.5 30 466-497 2-31 (285)
35 PRK06179 short chain dehydroge 86.8 0.73 1.6E-05 46.2 4.1 33 464-498 5-37 (270)
36 PRK12826 3-ketoacyl-(acyl-carr 86.6 0.76 1.7E-05 45.0 4.0 33 464-498 7-39 (251)
37 PRK07890 short chain dehydroge 86.5 0.97 2.1E-05 44.7 4.7 32 464-497 6-37 (258)
38 PRK12481 2-deoxy-D-gluconate 3 86.5 0.97 2.1E-05 45.3 4.8 32 464-497 9-40 (251)
39 PRK09135 pteridine reductase; 86.4 1.2 2.6E-05 43.6 5.2 32 463-496 6-37 (249)
40 PRK06182 short chain dehydroge 86.4 0.8 1.7E-05 46.2 4.1 32 464-497 4-35 (273)
41 PRK05854 short chain dehydroge 86.3 1 2.2E-05 47.1 4.9 31 464-496 15-45 (313)
42 PRK08177 short chain dehydroge 86.3 0.8 1.7E-05 44.8 4.0 32 464-497 2-33 (225)
43 PRK06949 short chain dehydroge 86.3 1.3 2.8E-05 43.8 5.5 43 461-505 7-51 (258)
44 KOG1208 Dehydrogenases with di 86.3 1 2.2E-05 48.2 5.0 46 450-497 22-67 (314)
45 TIGR01963 PHB_DH 3-hydroxybuty 86.1 1.1 2.4E-05 44.1 4.8 32 464-497 2-33 (255)
46 PRK07063 short chain dehydroge 86.1 1.1 2.4E-05 44.7 4.9 31 464-496 8-38 (260)
47 PRK05993 short chain dehydroge 86.0 1.1 2.4E-05 45.5 5.0 32 464-497 5-36 (277)
48 PRK06197 short chain dehydroge 86.0 0.9 2E-05 46.9 4.4 38 458-497 10-48 (306)
49 PRK12829 short chain dehydroge 86.0 1.3 2.8E-05 43.9 5.3 32 464-497 12-43 (264)
50 PRK08063 enoyl-(acyl carrier p 85.9 1.2 2.7E-05 43.8 5.1 29 464-494 5-33 (250)
51 PRK07523 gluconate 5-dehydroge 85.9 1.4 3E-05 43.9 5.5 34 463-498 10-43 (255)
52 PRK07326 short chain dehydroge 85.9 1.1 2.4E-05 43.8 4.7 32 464-497 7-38 (237)
53 PLN02780 ketoreductase/ oxidor 85.8 1.1 2.3E-05 47.5 4.8 32 464-497 54-85 (320)
54 PLN02662 cinnamyl-alcohol dehy 85.6 1.3 2.7E-05 45.6 5.2 31 464-496 5-35 (322)
55 PRK08589 short chain dehydroge 85.5 1.1 2.4E-05 45.4 4.6 33 464-498 7-39 (272)
56 PRK09291 short chain dehydroge 85.4 1 2.2E-05 44.5 4.3 32 464-497 3-34 (257)
57 PRK06398 aldose dehydrogenase; 85.4 0.89 1.9E-05 45.7 3.9 32 464-497 7-38 (258)
58 PRK12429 3-hydroxybutyrate deh 85.2 1.3 2.8E-05 43.6 4.9 31 464-496 5-35 (258)
59 PRK08340 glucose-1-dehydrogena 85.2 1.3 2.7E-05 44.4 4.8 31 465-497 2-32 (259)
60 PRK07478 short chain dehydroge 85.1 1.3 2.8E-05 44.1 4.8 32 464-497 7-38 (254)
61 PRK12742 oxidoreductase; Provi 85.1 1.4 3.1E-05 43.0 5.0 31 463-495 6-36 (237)
62 PRK05653 fabG 3-ketoacyl-(acyl 85.1 1.1 2.3E-05 43.6 4.2 33 464-498 6-38 (246)
63 PRK06523 short chain dehydroge 85.0 0.98 2.1E-05 45.0 3.9 33 464-498 10-42 (260)
64 PRK07856 short chain dehydroge 84.9 1 2.2E-05 44.8 4.0 34 463-498 6-39 (252)
65 PRK06124 gluconate 5-dehydroge 84.9 1.6 3.4E-05 43.4 5.4 39 457-497 5-43 (256)
66 PRK07062 short chain dehydroge 84.6 1.4 3E-05 44.1 4.8 33 463-497 8-40 (265)
67 PRK05717 oxidoreductase; Valid 84.5 1.8 3.8E-05 43.2 5.5 36 459-496 6-41 (255)
68 PRK07102 short chain dehydroge 84.4 1.1 2.5E-05 44.1 4.1 33 464-498 2-34 (243)
69 PRK07825 short chain dehydroge 84.4 1.5 3.1E-05 44.2 4.9 31 464-496 6-36 (273)
70 PF00106 adh_short: short chai 84.3 1.6 3.4E-05 40.3 4.7 33 464-498 1-34 (167)
71 TIGR01746 Thioester-redct thio 84.3 1.5 3.3E-05 45.2 5.1 28 466-495 2-31 (367)
72 CHL00194 ycf39 Ycf39; Provisio 84.2 1.1 2.4E-05 46.7 4.1 31 465-497 2-32 (317)
73 PRK08993 2-deoxy-D-gluconate 3 84.2 1.6 3.4E-05 43.6 5.0 39 456-496 3-41 (253)
74 TIGR03325 BphB_TodD cis-2,3-di 84.2 1.5 3.3E-05 43.9 4.9 33 463-497 5-37 (262)
75 PRK06077 fabG 3-ketoacyl-(acyl 84.1 1.4 3E-05 43.4 4.5 29 464-494 7-35 (252)
76 PRK05884 short chain dehydroge 84.0 1.5 3.2E-05 43.4 4.7 31 465-497 2-32 (223)
77 PRK06947 glucose-1-dehydrogena 84.0 1.4 3E-05 43.4 4.5 29 464-494 3-31 (248)
78 PRK06483 dihydromonapterin red 83.8 1.4 3E-05 43.3 4.4 34 463-498 2-35 (236)
79 PRK06180 short chain dehydroge 83.7 1.6 3.5E-05 44.2 4.9 33 463-497 4-36 (277)
80 PRK07889 enoyl-(acyl carrier p 83.6 1.4 3.1E-05 44.3 4.5 32 464-496 8-40 (256)
81 PRK07023 short chain dehydroge 83.5 1.2 2.6E-05 44.0 3.7 32 464-497 2-33 (243)
82 PRK07231 fabG 3-ketoacyl-(acyl 83.5 1.7 3.8E-05 42.6 4.9 33 464-498 6-38 (251)
83 PRK12824 acetoacetyl-CoA reduc 83.3 1.6 3.6E-05 42.6 4.6 33 464-498 3-35 (245)
84 PRK07024 short chain dehydroge 83.2 1.9 4E-05 43.1 5.1 32 464-497 3-34 (257)
85 PRK08618 ornithine cyclodeamin 83.0 5.2 0.00011 42.6 8.6 141 408-552 63-220 (325)
86 PLN00141 Tic62-NAD(P)-related 82.9 1.6 3.4E-05 43.8 4.4 32 463-496 17-48 (251)
87 PRK12823 benD 1,6-dihydroxycyc 82.9 1.4 3E-05 43.8 4.0 33 464-498 9-41 (260)
88 PLN00198 anthocyanidin reducta 82.8 1.5 3.2E-05 45.9 4.3 33 460-494 6-38 (338)
89 PRK08643 acetoin reductase; Va 82.7 1.9 4.1E-05 42.8 4.8 32 464-497 3-34 (256)
90 PRK08085 gluconate 5-dehydroge 82.6 1.9 4.2E-05 42.8 4.9 34 462-497 8-41 (254)
91 PRK12939 short chain dehydroge 82.5 2 4.3E-05 42.1 4.9 33 463-497 7-39 (250)
92 PRK08017 oxidoreductase; Provi 82.5 2 4.4E-05 42.4 5.0 31 464-496 3-33 (256)
93 PRK07774 short chain dehydroge 82.5 1.6 3.4E-05 43.0 4.2 33 464-498 7-39 (250)
94 PRK06500 short chain dehydroge 82.4 2 4.4E-05 42.1 4.9 32 464-497 7-38 (249)
95 PRK06101 short chain dehydroge 82.4 2 4.4E-05 42.5 4.9 32 464-497 2-33 (240)
96 PRK08339 short chain dehydroge 82.3 1.9 4.1E-05 43.6 4.8 32 464-497 9-40 (263)
97 PRK05872 short chain dehydroge 82.1 2.4 5.2E-05 43.8 5.5 43 463-507 9-53 (296)
98 PRK05866 short chain dehydroge 82.1 2 4.3E-05 44.5 4.9 32 464-497 41-72 (293)
99 PRK12828 short chain dehydroge 81.9 1.6 3.5E-05 42.3 4.0 32 464-497 8-39 (239)
100 PLN02695 GDP-D-mannose-3',5'-e 81.6 1.8 3.8E-05 46.6 4.5 36 460-497 18-53 (370)
101 PRK08220 2,3-dihydroxybenzoate 81.5 1.8 3.8E-05 42.7 4.1 34 464-499 9-42 (252)
102 PRK06200 2,3-dihydroxy-2,3-dih 81.3 2.3 5.1E-05 42.5 5.0 41 464-506 7-49 (263)
103 PRK06194 hypothetical protein; 81.0 2.3 5E-05 43.0 4.9 32 464-497 7-38 (287)
104 PRK06935 2-deoxy-D-gluconate 3 81.0 2.3 5.1E-05 42.4 4.8 34 462-497 14-47 (258)
105 PLN02253 xanthoxin dehydrogena 80.9 2.6 5.7E-05 42.6 5.2 32 464-497 19-50 (280)
106 PRK05876 short chain dehydroge 80.9 2.3 5E-05 43.5 4.9 31 464-496 7-37 (275)
107 PRK08213 gluconate 5-dehydroge 80.9 2.4 5.2E-05 42.2 4.9 31 464-496 13-43 (259)
108 PRK05565 fabG 3-ketoacyl-(acyl 80.7 2 4.4E-05 41.9 4.2 32 464-497 6-38 (247)
109 PRK08267 short chain dehydroge 80.7 2.5 5.4E-05 42.1 4.9 32 464-497 2-33 (260)
110 PRK07985 oxidoreductase; Provi 80.7 1.6 3.6E-05 45.1 3.7 30 464-495 50-79 (294)
111 PRK08945 putative oxoacyl-(acy 80.6 1.8 3.9E-05 42.8 3.9 35 462-498 11-45 (247)
112 PRK08263 short chain dehydroge 80.5 1.9 4.2E-05 43.5 4.1 32 464-497 4-35 (275)
113 PRK05786 fabG 3-ketoacyl-(acyl 80.5 2.7 5.8E-05 41.1 5.0 32 464-497 6-37 (238)
114 PRK08936 glucose-1-dehydrogena 80.5 2.3 4.9E-05 42.5 4.6 31 463-495 7-37 (261)
115 PRK12745 3-ketoacyl-(acyl-carr 80.5 2.3 5E-05 42.0 4.6 31 464-496 3-33 (256)
116 COG1484 DnaC DNA replication p 80.5 2.7 5.8E-05 43.5 5.2 85 423-508 62-153 (254)
117 PRK08862 short chain dehydroge 80.4 2.5 5.4E-05 42.2 4.8 32 464-497 6-37 (227)
118 PRK10538 malonic semialdehyde 80.3 2.7 5.8E-05 41.8 5.0 31 465-497 2-32 (248)
119 TIGR01831 fabG_rel 3-oxoacyl-( 80.2 3.1 6.8E-05 40.7 5.4 29 466-496 1-29 (239)
120 PRK08251 short chain dehydroge 80.1 2.7 5.9E-05 41.4 4.9 31 464-496 3-33 (248)
121 PRK06953 short chain dehydroge 79.9 2.6 5.6E-05 41.1 4.7 32 464-497 2-33 (222)
122 PRK08416 7-alpha-hydroxysteroi 79.9 2.4 5.3E-05 42.5 4.6 30 464-495 9-38 (260)
123 PLN02583 cinnamoyl-CoA reducta 79.9 2.5 5.5E-05 43.7 4.8 32 463-496 6-37 (297)
124 PRK06079 enoyl-(acyl carrier p 79.7 2.4 5.2E-05 42.5 4.5 34 464-497 8-41 (252)
125 PRK07074 short chain dehydroge 79.6 2.1 4.5E-05 42.5 4.0 32 464-497 3-34 (257)
126 PRK12384 sorbitol-6-phosphate 79.6 2.8 6.1E-05 41.6 4.9 32 464-497 3-34 (259)
127 PRK08226 short chain dehydroge 79.5 2.2 4.8E-05 42.5 4.1 33 464-498 7-39 (263)
128 PRK06914 short chain dehydroge 79.4 2.8 6.1E-05 42.2 4.9 31 464-496 4-34 (280)
129 PRK06505 enoyl-(acyl carrier p 79.4 2.1 4.6E-05 43.7 4.0 33 464-496 8-40 (271)
130 PRK06057 short chain dehydroge 79.3 2.9 6.4E-05 41.6 4.9 31 464-496 8-38 (255)
131 PLN02986 cinnamyl-alcohol dehy 79.2 2.1 4.5E-05 44.3 3.9 29 464-494 6-34 (322)
132 PRK07677 short chain dehydroge 79.1 2.9 6.4E-05 41.5 4.8 32 464-497 2-33 (252)
133 PRK06181 short chain dehydroge 79.0 2.4 5.2E-05 42.2 4.2 33 464-498 2-34 (263)
134 PRK06114 short chain dehydroge 78.9 2.6 5.6E-05 42.1 4.4 31 464-496 9-39 (254)
135 PRK07069 short chain dehydroge 78.7 2.4 5.2E-05 41.7 4.0 30 466-497 2-31 (251)
136 PRK12548 shikimate 5-dehydroge 78.7 1.9 4.2E-05 45.1 3.5 33 462-497 125-158 (289)
137 PRK12937 short chain dehydroge 78.5 2.9 6.4E-05 40.9 4.6 30 464-495 6-35 (245)
138 PRK07097 gluconate 5-dehydroge 78.5 3.6 7.8E-05 41.3 5.3 38 457-496 4-41 (265)
139 COG0451 WcaG Nucleoside-diphos 78.4 2.1 4.6E-05 43.3 3.7 30 466-497 3-32 (314)
140 PRK06139 short chain dehydroge 78.3 2.9 6.3E-05 44.4 4.8 32 464-497 8-39 (330)
141 PRK06171 sorbitol-6-phosphate 78.3 2.3 5E-05 42.5 3.9 31 464-496 10-40 (266)
142 PRK07067 sorbitol dehydrogenas 78.3 3.2 7E-05 41.2 4.9 31 464-496 7-37 (257)
143 PRK09072 short chain dehydroge 78.2 3.3 7.2E-05 41.4 4.9 32 464-497 6-37 (263)
144 PF05368 NmrA: NmrA-like famil 78.2 2.7 5.8E-05 41.5 4.2 29 466-496 1-29 (233)
145 PRK08628 short chain dehydroge 78.1 2.7 5.9E-05 41.7 4.3 33 463-497 7-39 (258)
146 PRK07109 short chain dehydroge 78.0 3.2 6.9E-05 44.0 4.9 33 463-497 8-40 (334)
147 PRK08703 short chain dehydroge 77.9 3.3 7.2E-05 40.7 4.8 32 464-497 7-38 (239)
148 PRK07533 enoyl-(acyl carrier p 77.8 3 6.4E-05 42.0 4.5 34 463-496 10-43 (258)
149 TIGR03206 benzo_BadH 2-hydroxy 77.8 3.5 7.6E-05 40.5 4.9 32 464-497 4-35 (250)
150 PRK12936 3-ketoacyl-(acyl-carr 77.8 3 6.6E-05 40.7 4.4 30 464-495 7-36 (245)
151 PRK12748 3-ketoacyl-(acyl-carr 77.7 2.8 6.1E-05 41.7 4.2 35 464-498 6-40 (256)
152 PRK08690 enoyl-(acyl carrier p 77.7 2.9 6.2E-05 42.3 4.3 32 464-495 7-38 (261)
153 PRK05875 short chain dehydroge 77.6 3.5 7.7E-05 41.4 5.0 33 463-497 7-39 (276)
154 PLN02650 dihydroflavonol-4-red 77.5 2.4 5.3E-05 44.6 3.9 32 462-495 4-35 (351)
155 PRK09496 trkA potassium transp 77.4 3.8 8.3E-05 44.7 5.5 105 386-506 157-273 (453)
156 PRK06463 fabG 3-ketoacyl-(acyl 77.4 3.3 7.2E-05 41.2 4.6 30 464-495 8-37 (255)
157 PRK06125 short chain dehydroge 77.3 3.6 7.7E-05 41.1 4.8 31 464-496 8-38 (259)
158 PRK06550 fabG 3-ketoacyl-(acyl 77.3 2.5 5.5E-05 41.2 3.7 33 464-498 6-38 (235)
159 PRK07060 short chain dehydroge 77.2 4.4 9.6E-05 39.6 5.4 34 462-497 8-41 (245)
160 PLN02657 3,8-divinyl protochlo 77.2 3.2 7E-05 45.2 4.8 41 456-498 53-93 (390)
161 PRK05650 short chain dehydroge 77.1 3.5 7.7E-05 41.5 4.8 31 464-496 1-31 (270)
162 PRK12938 acetyacetyl-CoA reduc 77.1 2.7 5.9E-05 41.3 3.9 29 464-494 4-32 (246)
163 cd03514 CrtR_beta-carotene-hyd 76.9 21 0.00046 35.7 10.2 22 239-260 167-188 (207)
164 PRK07666 fabG 3-ketoacyl-(acyl 76.8 3 6.5E-05 40.9 4.1 32 464-497 8-39 (239)
165 TIGR01830 3oxo_ACP_reduc 3-oxo 76.7 2.9 6.2E-05 40.6 3.9 30 466-497 1-30 (239)
166 PRK08642 fabG 3-ketoacyl-(acyl 76.7 3.4 7.4E-05 40.6 4.4 29 464-494 6-34 (253)
167 PRK07424 bifunctional sterol d 76.6 2.8 6E-05 46.4 4.1 31 464-496 179-209 (406)
168 PRK07806 short chain dehydroge 76.4 3.4 7.4E-05 40.7 4.4 31 464-496 7-37 (248)
169 PRK06128 oxidoreductase; Provi 76.4 2.7 5.8E-05 43.4 3.8 30 464-495 56-85 (300)
170 PRK12746 short chain dehydroge 76.3 3 6.6E-05 41.2 4.0 29 464-494 7-35 (254)
171 PRK07035 short chain dehydroge 76.1 4.2 9.1E-05 40.2 4.9 32 464-497 9-40 (252)
172 PRK08303 short chain dehydroge 76.0 3 6.4E-05 43.7 4.0 32 464-497 9-40 (305)
173 COG0702 Predicted nucleoside-d 75.7 2.9 6.4E-05 41.4 3.7 30 465-496 2-31 (275)
174 PRK05693 short chain dehydroge 75.7 4.3 9.4E-05 40.9 5.0 32 464-497 2-33 (274)
175 PRK07453 protochlorophyllide o 75.7 4 8.8E-05 42.5 4.9 31 464-496 7-37 (322)
176 PRK07984 enoyl-(acyl carrier p 75.6 3.4 7.4E-05 42.1 4.2 34 464-497 7-40 (262)
177 PLN02214 cinnamoyl-CoA reducta 75.6 3.1 6.7E-05 44.0 4.1 32 463-496 10-41 (342)
178 PRK08415 enoyl-(acyl carrier p 75.5 4.3 9.4E-05 41.6 5.0 33 464-496 6-38 (274)
179 PRK08277 D-mannonate oxidoredu 75.4 4.3 9.3E-05 40.9 4.9 32 464-497 11-42 (278)
180 TIGR03466 HpnA hopanoid-associ 75.3 2.9 6.3E-05 42.7 3.7 31 465-497 2-32 (328)
181 PRK06997 enoyl-(acyl carrier p 75.3 4.5 9.8E-05 40.9 5.0 32 464-495 7-38 (260)
182 PRK12367 short chain dehydroge 75.2 3.2 7E-05 42.1 3.9 33 464-498 15-47 (245)
183 PRK12747 short chain dehydroge 75.2 4 8.6E-05 40.5 4.5 30 464-495 5-34 (252)
184 PRK12743 oxidoreductase; Provi 75.1 4 8.7E-05 40.7 4.5 30 464-495 3-32 (256)
185 PLN02896 cinnamyl-alcohol dehy 75.1 3.8 8.2E-05 43.3 4.5 33 462-496 9-41 (353)
186 PRK07576 short chain dehydroge 75.0 3.5 7.7E-05 41.6 4.1 33 463-497 9-41 (264)
187 PRK06113 7-alpha-hydroxysteroi 74.9 3.6 7.8E-05 41.0 4.1 32 463-496 11-42 (255)
188 KOG1201 Hydroxysteroid 17-beta 74.5 2.7 5.8E-05 44.9 3.2 35 465-501 40-76 (300)
189 PLN02166 dTDP-glucose 4,6-dehy 74.3 3.9 8.4E-05 45.4 4.6 30 465-496 122-151 (436)
190 PRK06484 short chain dehydroge 74.0 4.4 9.6E-05 45.0 5.0 34 462-497 268-301 (520)
191 PF02423 OCD_Mu_crystall: Orni 73.7 5.6 0.00012 42.3 5.4 140 407-554 63-225 (313)
192 PRK07832 short chain dehydroge 73.6 5.1 0.00011 40.4 4.9 32 464-497 1-32 (272)
193 PRK05579 bifunctional phosphop 73.6 3.6 7.7E-05 45.5 4.0 100 374-498 117-237 (399)
194 PRK00258 aroE shikimate 5-dehy 73.6 4.1 8.9E-05 42.3 4.3 58 446-506 105-166 (278)
195 PF01370 Epimerase: NAD depend 73.6 3.5 7.5E-05 39.9 3.5 27 466-494 1-27 (236)
196 PRK09134 short chain dehydroge 73.3 4.8 0.0001 40.1 4.6 30 463-494 9-38 (258)
197 TIGR01777 yfcH conserved hypot 73.3 2.9 6.2E-05 42.0 3.0 30 466-497 1-30 (292)
198 PRK08159 enoyl-(acyl carrier p 73.1 5.5 0.00012 40.7 5.1 33 464-496 11-43 (272)
199 PRK10675 UDP-galactose-4-epime 73.0 4.1 8.8E-05 42.3 4.1 29 465-495 2-30 (338)
200 PRK07792 fabG 3-ketoacyl-(acyl 73.0 5.4 0.00012 41.5 5.0 32 462-495 11-42 (306)
201 PLN02686 cinnamoyl-CoA reducta 72.9 4.4 9.5E-05 43.5 4.5 32 461-494 51-82 (367)
202 PRK06138 short chain dehydroge 72.8 5.5 0.00012 39.2 4.8 31 464-496 6-36 (252)
203 PRK06701 short chain dehydroge 72.8 4.5 9.8E-05 41.7 4.4 33 464-498 47-79 (290)
204 PF06057 VirJ: Bacterial virul 72.7 5.2 0.00011 40.3 4.5 71 462-533 2-75 (192)
205 PRK08594 enoyl-(acyl carrier p 72.7 5.7 0.00012 40.1 5.0 32 464-495 8-39 (257)
206 PRK13394 3-hydroxybutyrate deh 72.6 5.7 0.00012 39.3 4.9 33 464-498 8-40 (262)
207 PRK06603 enoyl-(acyl carrier p 72.6 4.3 9.4E-05 41.0 4.1 33 464-496 9-41 (260)
208 PRK07831 short chain dehydroge 72.5 5.5 0.00012 39.8 4.8 32 464-496 18-49 (262)
209 PRK07370 enoyl-(acyl carrier p 72.5 4 8.7E-05 41.2 3.9 32 464-495 7-38 (258)
210 PRK12935 acetoacetyl-CoA reduc 72.5 5.4 0.00012 39.3 4.6 29 464-494 7-35 (247)
211 COG1028 FabG Dehydrogenases wi 72.1 6.1 0.00013 39.0 4.9 31 462-494 4-34 (251)
212 TIGR02415 23BDH acetoin reduct 72.0 6 0.00013 39.0 4.9 32 464-497 1-32 (254)
213 PRK07904 short chain dehydroge 71.8 4.3 9.3E-05 40.9 3.8 32 464-497 9-41 (253)
214 TIGR02685 pter_reduc_Leis pter 71.8 5.1 0.00011 40.4 4.4 30 464-495 2-31 (267)
215 PRK09242 tropinone reductase; 71.7 6.1 0.00013 39.3 4.9 32 464-497 10-41 (257)
216 PRK07814 short chain dehydroge 71.6 6.3 0.00014 39.6 5.0 33 463-497 10-42 (263)
217 PLN02240 UDP-glucose 4-epimera 71.5 4.7 0.0001 42.1 4.2 31 464-496 6-36 (352)
218 PLN02989 cinnamyl-alcohol dehy 71.4 4.3 9.3E-05 42.0 3.9 30 464-495 6-35 (325)
219 KOG1610 Corticosteroid 11-beta 71.4 2.6 5.6E-05 45.3 2.2 59 460-520 26-87 (322)
220 PRK08217 fabG 3-ketoacyl-(acyl 71.4 5.2 0.00011 39.2 4.2 33 464-498 6-38 (253)
221 TIGR02114 coaB_strep phosphopa 71.2 4 8.8E-05 41.4 3.5 30 467-497 18-47 (227)
222 PF01210 NAD_Gly3P_dh_N: NAD-d 71.0 9.8 0.00021 36.1 5.9 38 466-506 2-41 (157)
223 PRK07340 ornithine cyclodeamin 70.9 11 0.00023 40.1 6.7 84 408-494 61-155 (304)
224 PRK09009 C factor cell-cell si 70.9 4.5 9.8E-05 39.6 3.7 29 464-494 1-31 (235)
225 PRK12827 short chain dehydroge 70.8 4.7 0.0001 39.3 3.8 29 464-494 7-35 (249)
226 TIGR01829 AcAcCoA_reduct aceto 70.8 6.2 0.00013 38.4 4.6 32 464-497 1-32 (242)
227 PRK06172 short chain dehydroge 70.5 6.7 0.00015 38.8 4.8 32 464-497 8-39 (253)
228 KOG1200 Mitochondrial/plastidi 70.3 6.9 0.00015 40.0 4.8 44 463-508 14-59 (256)
229 PRK12859 3-ketoacyl-(acyl-carr 70.3 4.8 0.0001 40.3 3.8 32 464-495 7-38 (256)
230 PRK15181 Vi polysaccharide bio 70.1 5.1 0.00011 42.4 4.1 31 464-496 16-46 (348)
231 TIGR01181 dTDP_gluc_dehyt dTDP 69.9 4.6 0.0001 40.9 3.6 30 465-496 1-32 (317)
232 PRK08278 short chain dehydroge 69.9 5.3 0.00011 40.6 4.0 32 464-497 7-38 (273)
233 PRK12744 short chain dehydroge 69.8 4.8 0.0001 40.1 3.6 29 464-494 9-37 (257)
234 PRK09730 putative NAD(P)-bindi 69.8 6.4 0.00014 38.5 4.5 29 464-494 2-30 (247)
235 KOG1205 Predicted dehydrogenas 69.7 5.5 0.00012 42.2 4.2 41 464-506 13-55 (282)
236 TIGR02622 CDP_4_6_dhtase CDP-g 69.6 5 0.00011 42.3 3.9 32 464-497 5-36 (349)
237 PRK08219 short chain dehydroge 69.5 6.4 0.00014 37.9 4.4 31 464-497 4-34 (227)
238 PRK07041 short chain dehydroge 69.3 5.4 0.00012 38.8 3.9 30 467-498 1-30 (230)
239 TIGR01289 LPOR light-dependent 69.0 7.2 0.00016 40.8 4.9 32 464-497 4-36 (314)
240 cd01080 NAD_bind_m-THF_DH_Cycl 69.0 8.7 0.00019 37.5 5.2 88 450-558 29-120 (168)
241 TIGR01214 rmlD dTDP-4-dehydror 69.0 5.3 0.00012 40.3 3.8 31 465-497 1-31 (287)
242 PRK06198 short chain dehydroge 68.7 5.2 0.00011 39.7 3.6 32 464-497 7-39 (260)
243 PLN02653 GDP-mannose 4,6-dehyd 68.2 5.4 0.00012 41.7 3.8 30 464-495 7-36 (340)
244 KOG2380 Prephenate dehydrogena 68.2 3.8 8.2E-05 44.8 2.6 140 425-578 11-175 (480)
245 PRK06720 hypothetical protein; 68.1 8.5 0.00019 37.2 4.9 33 463-497 16-48 (169)
246 PRK06484 short chain dehydroge 67.9 6.7 0.00015 43.5 4.7 41 464-506 6-48 (520)
247 PLN02730 enoyl-[acyl-carrier-p 67.8 7 0.00015 41.4 4.5 31 463-494 9-40 (303)
248 PF01488 Shikimate_DH: Shikima 67.7 7.6 0.00017 36.0 4.3 43 462-507 11-56 (135)
249 PRK11440 putative hydrolase; P 67.6 33 0.00072 33.3 8.9 33 461-494 119-151 (188)
250 PRK06123 short chain dehydroge 67.5 7.7 0.00017 38.1 4.5 29 464-494 3-31 (248)
251 TIGR01179 galE UDP-glucose-4-e 67.4 5.6 0.00012 40.4 3.6 29 465-495 1-29 (328)
252 cd00431 cysteine_hydrolases Cy 67.2 50 0.0011 30.6 9.7 99 392-494 22-140 (161)
253 TIGR03589 PseB UDP-N-acetylglu 67.1 6.3 0.00014 41.4 4.0 31 464-496 5-37 (324)
254 PRK06732 phosphopantothenate-- 67.1 5.4 0.00012 40.5 3.4 30 467-497 19-48 (229)
255 PRK13656 trans-2-enoyl-CoA red 67.1 7.2 0.00016 43.3 4.5 34 460-496 38-73 (398)
256 PRK08261 fabG 3-ketoacyl-(acyl 66.9 35 0.00076 37.4 9.9 101 391-496 137-241 (450)
257 PRK07201 short chain dehydroge 66.9 7.5 0.00016 44.5 4.9 32 464-497 372-403 (657)
258 TIGR01472 gmd GDP-mannose 4,6- 66.8 6.4 0.00014 41.3 4.0 30 464-495 1-30 (343)
259 PRK06300 enoyl-(acyl carrier p 66.7 6.2 0.00013 41.6 3.9 34 462-495 7-40 (299)
260 KOG0725 Reductases with broad 66.7 8.4 0.00018 40.2 4.8 33 463-497 8-40 (270)
261 TIGR00507 aroE shikimate 5-deh 66.6 6.8 0.00015 40.4 4.1 43 461-506 115-159 (270)
262 PRK10217 dTDP-glucose 4,6-dehy 65.7 5.9 0.00013 41.5 3.5 29 464-494 2-30 (355)
263 KOG1600 Fatty acid desaturase 65.5 5.9 0.00013 42.6 3.4 22 89-110 34-55 (321)
264 TIGR02371 ala_DH_arch alanine 64.9 48 0.001 35.5 10.2 144 407-554 63-223 (325)
265 PRK06141 ornithine cyclodeamin 64.7 21 0.00046 37.9 7.5 97 407-506 60-169 (314)
266 PRK12749 quinate/shikimate deh 64.7 6.4 0.00014 41.5 3.5 32 463-497 124-156 (288)
267 PRK10669 putative cation:proto 64.6 15 0.00032 42.0 6.7 40 463-505 417-458 (558)
268 PLN00016 RNA-binding protein; 64.5 6.7 0.00015 42.1 3.7 36 461-498 50-89 (378)
269 PLN02206 UDP-glucuronate decar 64.4 8 0.00017 43.0 4.4 31 464-496 120-150 (442)
270 PLN02572 UDP-sulfoquinovose sy 64.3 7.1 0.00015 43.3 3.9 30 464-495 48-77 (442)
271 PRK07791 short chain dehydroge 64.2 10 0.00022 39.0 4.9 30 464-495 7-36 (286)
272 PRK14106 murD UDP-N-acetylmura 63.9 8.8 0.00019 42.1 4.6 38 463-503 5-42 (450)
273 COG0169 AroE Shikimate 5-dehyd 63.7 8 0.00017 41.0 4.0 60 446-508 107-171 (283)
274 PRK05599 hypothetical protein; 63.5 11 0.00024 37.7 4.8 29 465-496 2-30 (246)
275 TIGR01500 sepiapter_red sepiap 63.4 9.8 0.00021 38.0 4.4 31 465-497 2-36 (256)
276 PRK07775 short chain dehydroge 63.3 11 0.00024 38.1 4.9 31 464-496 11-41 (274)
277 smart00822 PKS_KR This enzymat 63.3 8.2 0.00018 34.8 3.5 31 464-496 1-32 (180)
278 PF00857 Isochorismatase: Isoc 62.8 56 0.0012 30.7 9.3 102 389-494 19-142 (174)
279 PLN02778 3,5-epimerase/4-reduc 62.6 9.9 0.00021 39.6 4.5 35 458-494 3-38 (298)
280 PRK09987 dTDP-4-dehydrorhamnos 62.5 7.9 0.00017 40.1 3.7 28 465-495 2-29 (299)
281 PRK06526 transposase; Provisio 62.4 8.7 0.00019 39.8 3.9 33 465-497 100-134 (254)
282 PLN02427 UDP-apiose/xylose syn 62.2 10 0.00023 40.5 4.6 36 459-496 10-46 (386)
283 PF13561 adh_short_C2: Enoyl-( 61.8 9.6 0.00021 37.7 4.0 21 475-495 6-26 (241)
284 PF02254 TrkA_N: TrkA-N domain 61.8 15 0.00032 32.3 4.8 38 466-506 1-40 (116)
285 PTZ00381 aldehyde dehydrogenas 61.3 11 0.00025 42.5 5.0 48 441-494 167-214 (493)
286 TIGR02632 RhaD_aldol-ADH rhamn 61.0 11 0.00024 44.3 4.9 106 371-497 336-446 (676)
287 PF01695 IstB_IS21: IstB-like 60.9 14 0.00029 36.2 4.8 43 464-506 48-93 (178)
288 PF02374 ArsA_ATPase: Anion-tr 60.2 9.3 0.0002 40.6 3.8 40 464-503 2-43 (305)
289 cd03505 Delta9-FADS-like The D 59.3 31 0.00067 34.3 7.0 25 238-262 128-153 (178)
290 PF00670 AdoHcyase_NAD: S-aden 58.6 16 0.00034 35.9 4.7 86 462-556 22-113 (162)
291 TIGR01809 Shik-DH-AROM shikima 58.3 12 0.00027 39.1 4.3 41 463-506 125-168 (282)
292 cd03512 Alkane-hydroxylase Alk 58.2 1.1E+02 0.0024 32.9 11.4 25 238-262 255-279 (314)
293 cd01065 NAD_bind_Shikimate_DH 58.1 19 0.0004 33.2 5.0 32 461-495 17-49 (155)
294 cd03510 Rhizobitoxine-FADS-lik 57.9 40 0.00086 32.9 7.5 16 154-169 71-86 (175)
295 PF04321 RmlD_sub_bind: RmlD s 57.6 11 0.00024 39.1 3.8 32 465-498 2-33 (286)
296 PRK14192 bifunctional 5,10-met 57.4 21 0.00045 37.8 5.8 44 451-496 142-190 (283)
297 cd07099 ALDH_DDALDH Methylomon 57.0 17 0.00037 40.1 5.4 47 442-494 179-225 (453)
298 PRK09620 hypothetical protein; 56.9 14 0.0003 37.9 4.2 20 476-495 30-49 (229)
299 PF00258 Flavodoxin_1: Flavodo 56.6 8.2 0.00018 35.3 2.3 33 469-503 7-39 (143)
300 PF01661 Macro: Macro domain; 56.5 51 0.0011 28.8 7.3 62 359-421 43-104 (118)
301 PRK06046 alanine dehydrogenase 56.4 32 0.00069 36.7 7.1 96 407-506 64-173 (326)
302 PRK08125 bifunctional UDP-gluc 56.2 13 0.00028 43.3 4.4 46 450-497 298-348 (660)
303 PLN02220 delta-9 acyl-lipid de 56.1 86 0.0019 33.7 10.1 26 237-262 234-260 (299)
304 PRK14027 quinate/shikimate deh 55.9 16 0.00034 38.6 4.5 40 463-505 127-169 (283)
305 PF01073 3Beta_HSD: 3-beta hyd 55.6 14 0.00031 38.4 4.3 66 467-548 1-68 (280)
306 TIGR00035 asp_race aspartate r 55.5 22 0.00047 35.9 5.4 136 385-532 50-194 (229)
307 PRK07364 2-octaprenyl-6-methox 55.3 14 0.00031 39.6 4.3 45 449-497 2-49 (415)
308 PRK07578 short chain dehydroge 55.2 13 0.00027 35.7 3.5 29 465-496 2-30 (199)
309 PLN02434 fatty acid hydroxylas 54.7 22 0.00047 37.0 5.2 41 127-167 165-208 (237)
310 cd01075 NAD_bind_Leu_Phe_Val_D 54.7 21 0.00045 35.5 5.0 28 464-494 29-56 (200)
311 PRK08309 short chain dehydroge 54.6 20 0.00044 35.0 4.8 38 465-505 2-41 (177)
312 KOG1502 Flavonol reductase/cin 54.6 14 0.00029 40.2 3.9 31 462-494 5-35 (327)
313 COG1090 Predicted nucleoside-d 54.5 11 0.00023 40.2 3.0 30 466-497 1-30 (297)
314 TIGR02853 spore_dpaA dipicolin 54.3 32 0.00068 36.3 6.5 77 395-497 101-182 (287)
315 TIGR00521 coaBC_dfp phosphopan 54.1 14 0.00031 40.8 4.0 34 463-496 185-232 (390)
316 PRK03692 putative UDP-N-acetyl 53.6 26 0.00056 36.3 5.7 52 440-494 83-135 (243)
317 PRK12377 putative replication 53.5 19 0.0004 37.4 4.6 50 456-505 94-146 (248)
318 PRK01045 ispH 4-hydroxy-3-meth 53.4 52 0.0011 35.3 8.0 80 394-494 14-93 (298)
319 KOG4169 15-hydroxyprostaglandi 53.4 15 0.00033 38.3 3.8 29 464-494 6-34 (261)
320 PRK05855 short chain dehydroge 52.6 22 0.00047 39.4 5.3 33 463-497 315-347 (582)
321 PRK11150 rfaD ADP-L-glycero-D- 52.5 13 0.00029 38.1 3.3 27 466-494 2-28 (308)
322 PRK11199 tyrA bifunctional cho 52.4 18 0.00039 39.5 4.5 43 456-500 91-133 (374)
323 KOG1371 UDP-glucose 4-epimeras 52.3 15 0.00032 40.0 3.7 41 463-505 2-45 (343)
324 PLN02174 aldehyde dehydrogenas 52.2 21 0.00047 40.4 5.2 48 441-494 170-217 (484)
325 cd07108 ALDH_MGR_2402 Magnetos 52.1 25 0.00054 39.0 5.6 50 441-494 175-224 (457)
326 PRK06719 precorrin-2 dehydroge 51.9 22 0.00047 34.2 4.5 41 462-505 12-52 (157)
327 PRK03562 glutathione-regulated 51.5 18 0.00039 42.2 4.6 46 458-506 395-442 (621)
328 PRK06199 ornithine cyclodeamin 51.1 75 0.0016 35.0 9.0 99 408-509 91-203 (379)
329 PRK12550 shikimate 5-dehydroge 50.3 15 0.00032 38.6 3.3 40 464-506 123-165 (272)
330 PRK08324 short chain dehydroge 50.2 22 0.00047 41.7 5.0 32 464-497 423-454 (681)
331 PRK08939 primosomal protein Dn 50.1 24 0.00053 37.6 4.9 44 463-506 156-202 (306)
332 cd07132 ALDH_F3AB Aldehyde deh 50.1 23 0.0005 39.4 4.9 47 442-494 159-205 (443)
333 PRK12549 shikimate 5-dehydroge 49.4 18 0.0004 37.9 3.9 40 463-505 127-169 (284)
334 PRK07952 DNA replication prote 49.4 32 0.00069 35.6 5.5 50 456-505 92-144 (244)
335 cd01012 YcaC_related YcaC rela 48.6 94 0.002 29.3 8.2 92 393-494 19-118 (157)
336 PRK08181 transposase; Validate 48.5 13 0.00029 38.9 2.6 44 461-504 104-150 (269)
337 PF02737 3HCDH_N: 3-hydroxyacy 48.4 30 0.00065 33.8 4.9 26 466-494 2-27 (180)
338 PRK08727 hypothetical protein; 48.4 22 0.00048 36.0 4.1 38 464-501 42-81 (233)
339 TIGR01647 ATPase-IIIA_H plasma 47.9 38 0.00081 40.5 6.5 129 394-538 400-547 (755)
340 TIGR00216 ispH_lytB (E)-4-hydr 46.7 75 0.0016 33.8 7.8 80 394-494 13-93 (280)
341 PRK10084 dTDP-glucose 4,6 dehy 46.2 18 0.00039 37.9 3.2 28 465-494 2-29 (352)
342 COG3967 DltE Short-chain dehyd 46.2 30 0.00066 35.8 4.6 43 465-509 7-51 (245)
343 COG0003 ArsA Predicted ATPase 46.0 22 0.00047 38.4 3.8 39 463-501 2-42 (322)
344 KOG3011 Ubiquitin-conjugating 45.7 17 0.00036 38.1 2.7 134 128-271 109-260 (293)
345 PRK12320 hypothetical protein; 45.7 22 0.00048 42.3 4.2 31 465-497 2-32 (699)
346 COG3320 Putative dehydrogenase 45.7 33 0.00072 38.0 5.1 43 464-508 1-49 (382)
347 PRK02472 murD UDP-N-acetylmura 45.6 21 0.00046 39.1 3.8 30 464-496 6-35 (447)
348 PLN02520 bifunctional 3-dehydr 45.4 29 0.00063 39.7 4.9 41 463-506 379-421 (529)
349 PRK05642 DNA replication initi 45.4 26 0.00057 35.5 4.1 38 464-501 46-85 (234)
350 cd07142 ALDH_F2BC Arabidosis a 45.3 37 0.00081 38.0 5.7 50 441-494 200-250 (476)
351 cd07136 ALDH_YwdH-P39616 Bacil 45.2 31 0.00067 38.7 5.0 48 441-494 158-205 (449)
352 PF02719 Polysacc_synt_2: Poly 45.2 27 0.00058 37.4 4.3 40 466-507 1-43 (293)
353 cd06215 FNR_iron_sulfur_bindin 45.1 46 0.001 32.7 5.8 53 434-491 157-222 (231)
354 PRK09496 trkA potassium transp 44.7 30 0.00065 37.8 4.8 38 465-505 2-41 (453)
355 PLN02203 aldehyde dehydrogenas 44.5 30 0.00065 39.2 4.8 48 441-494 166-213 (484)
356 PRK06035 3-hydroxyacyl-CoA deh 44.4 36 0.00078 35.4 5.1 36 463-501 3-40 (291)
357 PRK10517 magnesium-transportin 44.4 57 0.0012 39.9 7.4 126 397-538 500-650 (902)
358 PLN02766 coniferyl-aldehyde de 44.4 38 0.00082 38.4 5.6 50 441-494 217-267 (501)
359 TIGR01524 ATPase-IIIB_Mg magne 44.3 55 0.0012 39.8 7.2 127 397-538 465-615 (867)
360 PRK06835 DNA replication prote 44.2 33 0.00072 37.0 4.9 42 464-505 184-228 (329)
361 PRK09260 3-hydroxybutyryl-CoA 44.2 32 0.0007 35.7 4.7 94 464-560 2-125 (288)
362 PLN02545 3-hydroxybutyryl-CoA 43.6 44 0.00094 34.8 5.5 30 463-495 4-33 (295)
363 cd07145 ALDH_LactADH_F420-Bios 43.5 38 0.00082 37.6 5.3 49 442-494 183-231 (456)
364 cd03508 Delta4-sphingolipid-FA 43.1 1.7E+02 0.0038 31.0 10.0 20 237-256 221-240 (289)
365 PRK11908 NAD-dependent epimera 43.0 29 0.00063 36.4 4.2 31 464-496 2-33 (347)
366 TIGR00658 orni_carb_tr ornithi 42.8 58 0.0013 34.8 6.4 94 406-501 61-184 (304)
367 PLN00015 protochlorophyllide r 42.6 28 0.0006 36.2 3.9 28 467-496 1-29 (308)
368 PRK00141 murD UDP-N-acetylmura 42.4 30 0.00066 38.7 4.4 39 456-497 7-46 (473)
369 PLN02260 probable rhamnose bio 42.0 28 0.0006 40.5 4.2 33 463-497 6-40 (668)
370 PF08643 DUF1776: Fungal famil 42.0 33 0.00071 36.8 4.3 42 465-507 5-48 (299)
371 PF04127 DFP: DNA / pantothena 41.9 26 0.00057 34.8 3.4 21 476-496 30-50 (185)
372 PF03853 YjeF_N: YjeF-related 41.7 33 0.00072 33.1 4.1 42 453-494 14-57 (169)
373 cd03506 Delta6-FADS-like The D 41.6 1.2E+02 0.0025 30.0 8.0 17 153-169 48-64 (204)
374 TIGR00715 precor6x_red precorr 41.6 26 0.00056 36.6 3.4 32 465-499 2-33 (256)
375 PRK06718 precorrin-2 dehydroge 41.6 35 0.00077 34.0 4.3 41 462-505 9-49 (202)
376 PF08032 SpoU_sub_bind: RNA 2' 41.3 35 0.00075 27.9 3.6 68 446-518 3-70 (76)
377 cd07101 ALDH_SSADH2_GabD2 Myco 41.3 40 0.00087 37.4 5.1 50 437-494 174-224 (454)
378 cd07110 ALDH_F10_BADH Arabidop 41.2 47 0.001 36.9 5.6 50 441-494 179-228 (456)
379 PRK00779 ornithine carbamoyltr 41.0 59 0.0013 34.7 6.1 95 405-501 64-188 (304)
380 PRK11241 gabD succinate-semial 40.8 46 0.00099 37.6 5.5 52 437-494 202-254 (482)
381 PF01113 DapB_N: Dihydrodipico 40.8 35 0.00075 31.2 3.8 28 465-494 2-30 (124)
382 cd07134 ALDH_AlkH-like Pseudom 40.3 44 0.00096 37.0 5.2 47 442-494 159-205 (433)
383 TIGR02197 heptose_epim ADP-L-g 40.3 24 0.00051 36.0 2.9 28 466-495 1-29 (314)
384 cd05286 QOR2 Quinone oxidoredu 39.9 78 0.0017 31.4 6.5 43 458-503 133-177 (320)
385 KOG1203 Predicted dehydrogenas 39.8 29 0.00063 38.8 3.7 53 440-494 55-108 (411)
386 cd07119 ALDH_BADH-GbsA Bacillu 39.8 47 0.001 37.2 5.4 30 462-494 213-242 (482)
387 PRK00676 hemA glutamyl-tRNA re 39.7 34 0.00073 37.3 4.1 91 393-498 108-207 (338)
388 cd07116 ALDH_ACDHII-AcoD Ralst 39.6 51 0.0011 36.9 5.7 50 441-494 194-243 (479)
389 PRK06940 short chain dehydroge 39.5 47 0.001 33.9 5.0 30 464-497 3-32 (275)
390 PLN02467 betaine aldehyde dehy 39.4 49 0.0011 37.6 5.5 50 441-494 210-259 (503)
391 cd07114 ALDH_DhaS Uncharacteri 39.1 52 0.0011 36.5 5.6 30 462-494 198-227 (457)
392 cd07117 ALDH_StaphAldA1 Unchar 39.0 50 0.0011 37.1 5.4 30 462-494 214-243 (475)
393 cd07086 ALDH_F7_AASADH-like NA 38.9 48 0.001 37.2 5.3 31 461-494 214-244 (478)
394 cd03522 MoeA_like MoeA_like. T 38.9 39 0.00085 36.3 4.4 79 409-506 125-211 (312)
395 PRK07530 3-hydroxybutyryl-CoA 38.8 50 0.0011 34.3 5.1 38 463-503 4-43 (292)
396 TIGR01804 BADH glycine betaine 38.6 50 0.0011 36.8 5.3 50 441-494 192-241 (467)
397 PLN02996 fatty acyl-CoA reduct 38.6 45 0.00098 37.7 5.1 24 463-488 11-34 (491)
398 cd07093 ALDH_F8_HMSADH Human a 38.5 48 0.001 36.7 5.2 30 462-494 196-225 (455)
399 PRK14175 bifunctional 5,10-met 38.4 49 0.0011 35.3 5.0 96 451-567 141-246 (286)
400 PRK08293 3-hydroxybutyryl-CoA 38.1 41 0.00088 35.0 4.3 39 463-504 3-43 (287)
401 PRK13912 nuclease NucT; Provis 37.7 1.3E+02 0.0029 29.2 7.5 101 397-505 59-165 (177)
402 PRK08773 2-octaprenyl-3-methyl 37.7 40 0.00088 36.0 4.3 35 461-498 4-38 (392)
403 PF03446 NAD_binding_2: NAD bi 37.7 59 0.0013 30.9 5.0 98 464-571 2-120 (163)
404 cd07131 ALDH_AldH-CAJ73105 Unc 37.6 55 0.0012 36.6 5.5 50 441-494 194-243 (478)
405 PRK08116 hypothetical protein; 37.6 49 0.0011 34.5 4.8 41 465-505 116-159 (268)
406 PLN00093 geranylgeranyl diphos 37.6 39 0.00084 37.8 4.3 39 456-497 32-70 (450)
407 PF02606 LpxK: Tetraacyldisacc 37.5 29 0.00063 37.4 3.2 22 476-497 52-73 (326)
408 PLN02260 probable rhamnose bio 37.4 32 0.0007 40.0 3.8 29 464-494 381-409 (668)
409 PF02558 ApbA: Ketopantoate re 37.4 60 0.0013 29.8 4.9 38 466-506 1-39 (151)
410 cd06209 BenDO_FAD_NAD Benzoate 37.3 78 0.0017 31.2 6.0 56 432-491 154-218 (228)
411 PF01494 FAD_binding_3: FAD bi 37.2 38 0.00082 34.5 3.9 30 465-497 3-32 (356)
412 cd08345 Fosfomycin_RP Fosfomyc 37.1 53 0.0011 27.9 4.2 47 397-448 66-112 (113)
413 cd05188 MDR Medium chain reduc 37.1 1.2E+02 0.0026 29.6 7.2 40 462-504 134-175 (271)
414 TIGR00260 thrC threonine synth 37.1 29 0.00062 36.7 3.0 55 421-494 44-99 (328)
415 COG0569 TrkA K+ transport syst 37.0 73 0.0016 32.3 5.8 29 464-495 1-29 (225)
416 TIGR02992 ectoine_eutC ectoine 37.0 75 0.0016 34.0 6.2 98 407-507 63-174 (326)
417 cd07559 ALDH_ACDHII_AcoD-like 36.9 57 0.0012 36.7 5.5 53 437-494 191-243 (480)
418 PRK05865 hypothetical protein; 36.8 36 0.00078 41.5 4.1 31 465-497 2-32 (854)
419 cd08241 QOR1 Quinone oxidoredu 36.8 85 0.0018 31.3 6.2 40 463-504 140-181 (323)
420 PRK06921 hypothetical protein; 36.8 60 0.0013 33.8 5.3 43 463-505 117-163 (266)
421 PRK07201 short chain dehydroge 36.7 35 0.00075 39.1 3.9 31 465-497 2-34 (657)
422 cd00550 ArsA_ATPase Oxyanion-t 36.7 31 0.00068 35.4 3.2 38 466-503 3-42 (254)
423 cd07105 ALDH_SaliADH Salicylal 36.6 55 0.0012 36.1 5.2 31 461-494 179-209 (432)
424 TIGR01238 D1pyr5carbox3 delta- 36.6 57 0.0012 37.0 5.5 53 437-494 216-271 (500)
425 TIGR01915 npdG NADPH-dependent 36.5 58 0.0013 32.4 5.0 38 465-504 2-41 (219)
426 cd07097 ALDH_KGSADH-YcbD Bacil 36.5 56 0.0012 36.5 5.4 31 461-494 213-243 (473)
427 PLN02503 fatty acyl-CoA reduct 36.4 62 0.0013 38.0 5.8 26 462-489 118-143 (605)
428 cd07124 ALDH_PutA-P5CDH-RocA D 36.4 55 0.0012 37.1 5.3 50 441-494 225-280 (512)
429 TIGR01517 ATPase-IIB_Ca plasma 36.2 98 0.0021 38.0 7.7 125 397-538 529-681 (941)
430 PF10727 Rossmann-like: Rossma 36.2 43 0.00092 31.4 3.7 80 465-553 12-104 (127)
431 PRK13508 tagatose-6-phosphate 36.1 40 0.00086 34.9 3.9 95 399-508 203-305 (309)
432 PF01266 DAO: FAD dependent ox 36.0 43 0.00093 34.2 4.0 33 465-500 1-33 (358)
433 PF03808 Glyco_tran_WecB: Glyc 36.0 31 0.00066 33.5 2.8 63 443-508 29-98 (172)
434 cd07102 ALDH_EDX86601 Uncharac 36.0 62 0.0013 35.8 5.5 49 441-494 175-223 (452)
435 PF01583 APS_kinase: Adenylyls 35.9 50 0.0011 32.1 4.2 36 466-501 5-42 (156)
436 KOG1209 1-Acyl dihydroxyaceton 35.8 46 0.001 34.7 4.1 36 461-497 5-40 (289)
437 TIGR00682 lpxK tetraacyldisacc 35.7 40 0.00086 36.2 3.8 53 397-497 14-66 (311)
438 cd06184 flavohem_like_fad_nad_ 35.6 82 0.0018 31.5 5.9 39 450-491 196-234 (247)
439 PRK08291 ectoine utilization p 35.6 93 0.002 33.3 6.6 95 408-506 67-176 (330)
440 PRK13252 betaine aldehyde dehy 35.5 61 0.0013 36.5 5.4 48 442-494 202-249 (488)
441 cd07115 ALDH_HMSADH_HapE Pseud 35.3 64 0.0014 35.8 5.5 30 462-494 196-225 (453)
442 PRK11563 bifunctional aldehyde 35.3 56 0.0012 38.6 5.3 46 442-494 209-256 (675)
443 PRK08013 oxidoreductase; Provi 35.3 41 0.00089 36.3 3.9 32 464-498 4-35 (400)
444 PRK06129 3-hydroxyacyl-CoA deh 34.9 56 0.0012 34.4 4.7 37 464-503 3-41 (308)
445 PF08659 KR: KR domain; Inter 34.8 46 0.001 32.0 3.8 31 466-498 3-34 (181)
446 PRK06823 ornithine cyclodeamin 34.7 1.3E+02 0.0027 32.4 7.4 95 407-505 62-171 (315)
447 PRK11259 solA N-methyltryptoph 34.6 39 0.00086 35.5 3.6 31 465-498 5-35 (376)
448 cd01015 CSHase N-carbamoylsarc 34.6 3E+02 0.0064 26.4 9.4 33 461-494 112-144 (179)
449 PF02401 LYTB: LytB protein; 34.5 88 0.0019 33.3 6.1 116 393-540 11-126 (281)
450 PRK06130 3-hydroxybutyryl-CoA 34.3 66 0.0014 33.6 5.2 40 463-505 4-45 (311)
451 cd08289 MDR_yhfp_like Yhfp put 34.2 70 0.0015 32.7 5.2 42 462-505 146-189 (326)
452 TIGR02032 GG-red-SF geranylger 34.2 39 0.00085 33.7 3.3 33 465-500 2-34 (295)
453 cd07091 ALDH_F1-2_Ald2-like AL 34.2 70 0.0015 35.8 5.7 30 462-494 220-250 (476)
454 cd05311 NAD_bind_2_malic_enz N 34.2 36 0.00078 34.6 3.1 34 462-498 24-60 (226)
455 cd07138 ALDH_CddD_SSP0762 Rhod 34.1 72 0.0016 35.6 5.7 30 462-494 209-238 (466)
456 PLN02527 aspartate carbamoyltr 34.1 1E+02 0.0022 33.0 6.6 161 406-570 61-267 (306)
457 PLN02725 GDP-4-keto-6-deoxyman 34.1 25 0.00054 35.7 1.9 26 467-494 1-26 (306)
458 cd07113 ALDH_PADH_NahF Escheri 34.0 61 0.0013 36.4 5.1 48 442-494 202-249 (477)
459 cd07103 ALDH_F5_SSADH_GabD Mit 33.9 68 0.0015 35.4 5.4 50 441-494 176-225 (451)
460 PRK06522 2-dehydropantoate 2-r 33.8 65 0.0014 33.0 5.0 39 465-506 2-42 (304)
461 cd06216 FNR_iron_sulfur_bindin 33.6 63 0.0014 32.3 4.7 60 435-499 177-242 (243)
462 cd07088 ALDH_LactADH-AldA Esch 33.4 67 0.0015 35.7 5.3 27 463-492 213-239 (468)
463 cd05191 NAD_bind_amino_acid_DH 33.2 88 0.0019 26.5 4.9 34 461-497 21-55 (86)
464 PRK09183 transposase/IS protei 33.1 53 0.0011 34.0 4.1 35 464-498 103-139 (259)
465 PRK00124 hypothetical protein; 33.1 1.8E+02 0.0039 28.4 7.5 84 399-500 13-97 (151)
466 cd07144 ALDH_ALD2-YMR170C Sacc 33.0 77 0.0017 35.6 5.7 30 462-494 223-252 (484)
467 PRK12409 D-amino acid dehydrog 33.0 45 0.00097 35.9 3.8 33 464-499 2-34 (410)
468 KOG1207 Diacetyl reductase/L-x 32.9 63 0.0014 32.8 4.4 44 464-509 8-53 (245)
469 cd07090 ALDH_F9_TMBADH NAD+-de 32.9 66 0.0014 35.7 5.1 30 462-494 194-223 (457)
470 cd07109 ALDH_AAS00426 Uncharac 32.8 72 0.0016 35.4 5.4 31 461-494 195-225 (454)
471 PRK13473 gamma-aminobutyraldeh 32.8 71 0.0015 35.7 5.4 30 462-494 216-245 (475)
472 PF03807 F420_oxidored: NADP o 32.7 1E+02 0.0022 26.0 5.3 39 467-508 3-47 (96)
473 cd07130 ALDH_F7_AASADH NAD+-de 32.7 65 0.0014 36.2 5.1 30 462-494 214-243 (474)
474 PRK07417 arogenate dehydrogena 32.5 65 0.0014 33.4 4.7 37 465-504 2-40 (279)
475 PLN02466 aldehyde dehydrogenas 32.5 70 0.0015 36.8 5.4 51 440-494 253-304 (538)
476 PRK00421 murC UDP-N-acetylmura 32.4 52 0.0011 36.5 4.2 31 464-497 8-39 (461)
477 PF13580 SIS_2: SIS domain; PD 32.3 33 0.00072 31.9 2.3 25 392-416 112-136 (138)
478 cd07106 ALDH_AldA-AAD23400 Str 32.3 71 0.0015 35.4 5.3 48 442-494 173-220 (446)
479 cd07107 ALDH_PhdK-like Nocardi 32.3 81 0.0017 35.1 5.7 31 461-494 193-223 (456)
480 TIGR02278 PaaN-DH phenylacetic 32.2 80 0.0017 37.3 5.9 48 440-494 203-252 (663)
481 PRK00066 ldh L-lactate dehydro 32.2 94 0.002 33.2 5.9 68 464-535 7-83 (315)
482 cd07087 ALDH_F3-13-14_CALDH-li 31.8 75 0.0016 35.1 5.3 47 442-494 159-205 (426)
483 PF03033 Glyco_transf_28: Glyc 31.8 45 0.00098 29.9 3.1 29 478-506 15-43 (139)
484 cd07118 ALDH_SNDH Gluconobacte 31.7 77 0.0017 35.3 5.4 30 462-494 198-227 (454)
485 PRK04308 murD UDP-N-acetylmura 31.6 50 0.0011 36.4 3.9 31 463-496 5-35 (445)
486 PRK05808 3-hydroxybutyryl-CoA 31.6 70 0.0015 33.0 4.8 29 464-495 4-32 (282)
487 PRK12360 4-hydroxy-3-methylbut 31.5 1.9E+02 0.0042 30.8 8.0 79 394-493 14-95 (281)
488 PRK12266 glpD glycerol-3-phosp 31.4 47 0.001 37.6 3.7 36 462-500 5-40 (508)
489 cd07085 ALDH_F6_MMSDH Methylma 31.4 68 0.0015 35.9 4.9 30 462-494 214-243 (478)
490 PRK13982 bifunctional SbtC-lik 31.3 41 0.00089 38.3 3.2 22 475-496 282-303 (475)
491 cd01014 nicotinamidase_related 31.3 2.6E+02 0.0056 26.3 8.2 33 461-494 97-129 (155)
492 PRK05714 2-octaprenyl-3-methyl 31.1 53 0.0011 35.3 3.9 31 464-497 3-33 (405)
493 PRK01906 tetraacyldisaccharide 31.0 52 0.0011 35.8 3.8 21 400-420 45-65 (338)
494 PF07287 DUF1446: Protein of u 31.0 73 0.0016 35.1 5.0 74 481-565 63-142 (362)
495 PRK03659 glutathione-regulated 31.0 60 0.0013 37.7 4.6 41 462-505 399-441 (601)
496 PLN00203 glutamyl-tRNA reducta 30.9 96 0.0021 35.7 6.1 42 463-507 266-310 (519)
497 TIGR03216 OH_muco_semi_DH 2-hy 30.8 87 0.0019 35.2 5.7 30 462-494 219-248 (481)
498 TIGR01377 soxA_mon sarcosine o 30.8 49 0.0011 34.9 3.5 31 465-498 2-32 (380)
499 PRK15122 magnesium-transportin 30.8 1.1E+02 0.0023 37.7 6.7 73 462-538 566-650 (903)
500 TIGR03240 arg_catab_astD succi 30.7 72 0.0016 35.9 5.0 30 462-494 210-240 (484)
No 1
>PLN02869 fatty aldehyde decarbonylase
Probab=100.00 E-value=6.3e-198 Score=1602.32 Aligned_cols=568 Identities=71% Similarity=1.239 Sum_probs=548.2
Q ss_pred CCCCCCCCCCCCCCCCCCccEEeehHHHhhhhhhhhcCccccccccchhhHHHHHHHHHHHhHHHHHhhchhhHhcCcCC
Q 007475 1 MASKPGILTEWPWKPLGSYKHVVLAPWAMHSIYCFIGSRKSERDYAYFLIFPFLLLRMLHDQIWISLSRYRTAKRNNRIV 80 (602)
Q Consensus 1 m~~~~~~l~~wpw~~lg~~kY~~~~P~v~~~~~~~~~~~~~~~~~~~~~il~~~llRyl~~~~wi~~~~~~~~~~k~KIq 80 (602)
||++||+||+|||++||||||++|+|+|+|++|++++++++++|+.|++|++++++|++++|+|++++|++++++|+||+
T Consensus 1 ma~~pg~lt~wpW~~lG~~Ky~~~~p~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~l~~q~W~s~sr~~~~~~~~ri~ 80 (620)
T PLN02869 1 MASKPGILTDWPWKPLGSFKYVVLAPWVIHSIYSFVVKDEKERDLSYFLIFPFLLWRMLHNQLWISLSRYRTAKGNNRIV 80 (620)
T ss_pred CCCCCcccccCcccccCCeeeeeehHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeee
Confidence 99999999999999999999999999999999999988777777789999999999999999999999999999999999
Q ss_pred CCCCCccchhhhhcchhhhHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhcc
Q 007475 81 DKAIEFDQVDRERNWDDQIVFNGLIFYIVRMLIPPSYSNLRFWRSDGVILTILVHMGPVEFLYYWFHRALHHHYLYSRYH 160 (602)
Q Consensus 81 ~~~~~~~qvdrE~~~~N~iIl~~li~~l~~~~~P~~~~~lP~w~~~glil~lll~llv~Df~fYW~HRllH~~~LY~riH 160 (602)
+++++|+|+|||++||||+|++.++++++.+.+| +.+.+|.|+..|++..+++|+++.|++|||+||++|++++||++|
T Consensus 81 ~~~i~f~QvDre~~wDd~iil~~l~~~~~~~~~p-~~~~~P~W~~~g~l~~~Llhv~~~Df~fYW~HRllH~~~LYwr~H 159 (620)
T PLN02869 81 DKGIEFEQVDRERNWDDQILFNGILFYVGYMILP-GASHMPLWRTDGVLITILLHMGPVEFLYYWLHRALHHHYLYSRYH 159 (620)
T ss_pred ccCCCceeeccccccchHHHHHHHHHHHHHHhhh-hhhcCcccccchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999999999999999999999999999999 789999999999999999999999999999999999999999999
Q ss_pred cCCccCcCCCcchhhhccc-hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccccceeecccccccccCCc
Q 007475 161 SHHHSSVVTEPITSVIHPF-AEHIVYFLLFAIPLVTTMVLKNASIASFVGYIIYVDFMNNMGHCNFEFIPMWLFTVFPPL 239 (602)
Q Consensus 161 kvHHss~~p~p~ta~~~hP-lE~ll~~~lf~iPll~~~llg~~si~~i~~yli~~~~~~~~~Hsgye~~P~~~~~~lP~L 239 (602)
++||++.+|+|+|+. .|| .|.+.+.+++.+|+++..+.+..|+.++++|+++.++.++++|||+|++|+++++.+|++
T Consensus 160 kvHHss~~~~P~Ts~-~HP~~E~L~y~ll~~IPLllli~~g~~hi~t~~~yli~~~f~~~~gHSN~El~P~~~~~~~ppL 238 (620)
T PLN02869 160 SHHHSSIVTEPITSV-IHPFAEHIAYFLLFAIPLLTTIFTGTASIAAFFGYISYIDFMNNMGHCNFELIPKWLFSIFPPL 238 (620)
T ss_pred hhccCCCCCCchhhh-cCcHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcccccCccccccchhccCCcc
Confidence 999999999999987 465 577777777888998876677778999999999999999999999999999998888999
Q ss_pred ccccCCchhHHHhhhCCCCCCCCCchhhhhhcCCCCCCCchHHHHHhhccCccccccCCCCceeeecccCCccccccccc
Q 007475 240 KFLMYTPSYHSLHHTQFRTNYSLFMPIYDYIYGTIDRSSDSVYEKSLKRSGEEEEESADDVDVVHLTHLTTPESIYHLRI 319 (602)
Q Consensus 240 k~li~Tp~~H~lHH~~~~~NYGl~f~lWDrLFGT~~~~~~~~~~~~~~r~g~~e~~~~~~pd~V~l~H~~~~~s~~h~~~ 319 (602)
+|+++||++|++||+++++|||++|++||++|||+++++|+.||++.. +.++ +||||||||+||++|+||+||
T Consensus 239 kyll~TPsfHdlHHs~fd~NYGlfF~~WDrLFGT~d~~s~~l~e~~~~--~~~~-----~pd~V~l~H~t~~~s~~h~~~ 311 (620)
T PLN02869 239 KYLMYTPSYHSLHHTQFRTNYSLFMPIYDYIYGTMDKSSDTLYEKSLK--RPEE-----IPDVVHLTHLTTPDSIYHLRL 311 (620)
T ss_pred hheecCchHHhHHhccCCcCcccchHHHHhccCCCCCCchhHHHHhhc--Cccc-----CCCEEEEeccCCHHHhhccch
Confidence 999999999999999999999999999999999999999999999987 4444 999999999999999999999
Q ss_pred hhhhhccCCcccccCCcchhhcchhhHHHHHHHHHHHHhcceEEEeecccCcccceeEEeeccCceeccchhhhHHHHHH
Q 007475 320 GFASLASKPHRYTYTLSQWYLQLLWPFTASCSVLVSWIYGRTFVSESNTLDKLKLQTWVVPRYIVQYNLPWRREAINSLI 399 (602)
Q Consensus 320 ~~~s~as~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~tw~ipr~~~~y~~~~~~~~in~~i 399 (602)
||||+||+||+ ++||||||||+|+++|+++ |+|||+|++|+|+|||+++|||+||||||||++|+++|+||++|
T Consensus 312 ~~~s~as~p~~-----~~~~l~~~wp~~~~~m~~~-w~~~~~f~~~~~~~~~~~~~tw~vpr~~~qy~~~~~~~~in~~I 385 (620)
T PLN02869 312 GFASLASKPYI-----SKWYLRLMWPVTSWSMMLT-WIYGRTFVLERNRFNKLNLQTWVIPKYKIQYLLKWQNESINSLI 385 (620)
T ss_pred HHHHhccCCcc-----chhHHHHHHHHHHHHHHHH-HHhCCceEeeeeeccceeeeEEEeccccccccCchhhhhHHHHH
Confidence 99999999999 9999999999999999999 79999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEeeccccccccccccccchhccCCCCccEEEeeCCccchhhhhhcCCccCceEEEeccccchhhHH
Q 007475 400 EEAILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVAN 479 (602)
Q Consensus 400 e~ai~~a~~~g~kv~sl~~lnk~~~ln~~g~l~~~~~p~~l~vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~ 479 (602)
|+||+||||+||||+|||+|||||+|||||||||+|||+ |||||||||||||||||||||+|||||||||++ |||||
T Consensus 386 e~ail~ad~~Gvkv~sLg~LNk~~~LN~~G~l~v~k~p~-L~vrvv~G~tLtaAvvln~ip~~~~~vfl~G~~--sK~~r 462 (620)
T PLN02869 386 EEAILEADKRGVKVLSLGLLNQGEELNRYGELYIHRNPK-LKIKVVDGSSLAVAVVLNSIPKGTTQVLFRGNL--SKVAY 462 (620)
T ss_pred HHHHHHHHhcCCEEEechhcchhhhhcCCceEeeecCCC-cceEEEeCCchHHHHHHHhcCCCCceEEEecCc--cHHHH
Confidence 999999999999999999999999999999999999999 999999999999999999999999999999999 69999
Q ss_pred HHHHHhhcCCcEEEeechhHHHHHHhcCch-hhhccceeccccccccceEEEEcCCCCHHHhhcCCCCCeeeecccCCCc
Q 007475 480 AVASSLCQMGIKVATICKDDYEKLKLRIPV-EAQHNLVLSTSYAAHKTKIWLVGDDLTGKEQARAPKGTIFIPYTQIPPR 558 (602)
Q Consensus 480 aia~~lc~~~~~v~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~k~w~vg~~~~~~eq~~a~~gt~f~~~~~~pp~ 558 (602)
|||+|||||||||+++|+|||++||+|+|+ |+|+||+|+||| +||+||||||+|++||+|||+||+||||||+||+
T Consensus 463 aia~~lc~r~i~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~k~w~vg~~~~~~eq~~A~~gt~f~~~~~~p~~ 539 (620)
T PLN02869 463 FIASALCQRGIQVATFREDEYEKLNKKLPNTECGSKLLLSKNY---SEKIWLVGDGLTEEEQKKASKGTLFIPFSQFPPK 539 (620)
T ss_pred HHHHHHHhcCCeEeecCHHHHHHHHHhccchhhhhhEEEeecc---CceeEEecCCCCHHHHhhCCCCCeecccccCCch
Confidence 999999999999777999999999999998 999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCcccccCCcccCCCCCCCcccchhhHH
Q 007475 559 KLRKDCFYHSTPAMIIPPSLSNMHSCEVSST 589 (602)
Q Consensus 559 ~~r~dc~y~~~~am~~p~~~~~~~~ce~~~~ 589 (602)
++||||||++||||++||++||+|||||||+
T Consensus 540 ~~R~dC~Y~~~pam~~p~~~~~~~sce~~l~ 570 (620)
T PLN02869 540 RLRKDCFYHTTPAMMSPKSFENVDSCENWLP 570 (620)
T ss_pred hhhccccccCCccccCChhhcccchhhcccc
Confidence 9999999999999999999999999999996
No 2
>PF12076 Wax2_C: WAX2 C-terminal domain; InterPro: IPR021940 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 170 amino acids in length. This domain is found associated with PF04116 from PFAM. This domain has a conserved LEGW sequence motif. This region has similarity to short chain dehydrogenases [].
Probab=100.00 E-value=2.1e-56 Score=419.76 Aligned_cols=119 Identities=56% Similarity=0.938 Sum_probs=116.9
Q ss_pred EEEeccccchhhHHHHHHHhhcCCcEEEeechhHHHHHHhcCchhhhccceeccccccccceEEEEcCCCCHHHhhcCCC
Q 007475 466 VLLRGTVTANKVANAVASSLCQMGIKVATICKDDYEKLKLRIPVEAQHNLVLSTSYAAHKTKIWLVGDDLTGKEQARAPK 545 (602)
Q Consensus 466 v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~w~vg~~~~~~eq~~a~~ 545 (602)
|||+|++ ||||||||+|||||||||+|+|+|+|++||+++|+|+|+||+|||+| +.|+||||||+|++||+|||+
T Consensus 1 V~L~G~~--sKvaraiA~~LC~rgv~V~m~~~~~y~~lk~~~~~~~~~~Lv~~~~~---~~K~WlVGd~l~~~EQ~~Ap~ 75 (164)
T PF12076_consen 1 VFLTGNT--SKVARAIALALCRRGVQVVMLSKERYESLKSEAPEECQSNLVQSTSY---QAKTWLVGDGLTEEEQKWAPK 75 (164)
T ss_pred Ceecccc--cHHHHHHHHHHHhcCCEEEEecHHHHHHHHHHcCHHhhccEEeecCC---CceeEEeCCCCCHHHHhcCCC
Confidence 7999999 69999999999999999999999999999999999999999999999 559999999999999999999
Q ss_pred CCeeeecccCCCcCCCCCcccccCCcccCCCCCCCcccchhhHH
Q 007475 546 GTIFIPYTQIPPRKLRKDCFYHSTPAMIIPPSLSNMHSCEVSST 589 (602)
Q Consensus 546 gt~f~~~~~~pp~~~r~dc~y~~~~am~~p~~~~~~~~ce~~~~ 589 (602)
||+|||||||||+++||||||++||||++|+++||+|||||||+
T Consensus 76 Gt~FipfsqfP~~~~RkDC~Y~~tPAM~~P~~~~nl~sCEnwlp 119 (164)
T PF12076_consen 76 GTHFIPFSQFPPKKVRKDCTYHSTPAMKVPKSMENLHSCENWLP 119 (164)
T ss_pred CCEEeeccCCCcHHHhCCCcccCcccccCChhhhhhhhhhccch
Confidence 99999999999999999999999999999999999999999998
No 3
>KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism]
Probab=100.00 E-value=1.7e-33 Score=286.11 Aligned_cols=215 Identities=19% Similarity=0.248 Sum_probs=172.8
Q ss_pred hHHHHHHHHHHHhHHHHH--hhchhhHhcCcCCCCCCCccchhhhhcc-----hhhhHHHHHHHHHHHhhcC-C---CCC
Q 007475 50 IFPFLLLRMLHDQIWISL--SRYRTAKRNNRIVDKAIEFDQVDRERNW-----DDQIVFNGLIFYIVRMLIP-P---SYS 118 (602)
Q Consensus 50 il~~~llRyl~~~~wi~~--~~~~~~~~k~KIq~~~~~~~qvdrE~~~-----~N~iIl~~li~~l~~~~~P-~---~~~ 118 (602)
++...+.-++.++.|+.+ .+.++++||||||+++.+ ..++.+.| .||++++.++..+.+...+ . ...
T Consensus 35 ~~~~~~~y~l~~lpf~~iD~t~~~~~~~rYKIQp~k~~--s~~~~~kc~k~vl~n~~~v~~p~~~~~y~~~~~~~~~~~~ 112 (283)
T KOG0873|consen 35 FIVHELVYWLFCLPFIFIDVTNRPPFLRRYKIQPKKNP--SLSKQLKCLKVVLLNHFLVVLPLTLVSYPFVEWFGLPSGA 112 (283)
T ss_pred HHHHHHHHHHhcchheEeecccCcchhhhhccCCCCCC--CHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHhCCCcCC
Confidence 444445555555666554 446889999999998764 44555554 3788888877766665433 1 223
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhcccCCccCcCCCcchhhhccchhHHHHHHHHHHHHHHHHH
Q 007475 119 NLRFWRSDGVILTILVHMGPVEFLYYWFHRALHHHYLYSRYHSHHHSSVVTEPITSVIHPFAEHIVYFLLFAIPLVTTMV 198 (602)
Q Consensus 119 ~lP~w~~~glil~lll~llv~Df~fYW~HRllH~~~LY~riHkvHHss~~p~p~ta~~~hPlE~ll~~~lf~iPll~~~l 198 (602)
.+|+|.+ ++.+++++++++|+.+||.||++|++++||.+||+||++.+|.+.+|.|+||+|+++.++. |+++..+
T Consensus 113 plPt~~~--~l~~l~i~~liEd~~fY~~HRL~H~~~~Yk~iHKvHHe~taPf~~sa~YaHp~E~~~lg~~---~~~~p~~ 187 (283)
T KOG0873|consen 113 PLPSWKE--MLAQLVVFFLIEDIGFYWSHRLFHHKWLYKYIHKVHHEYTAPFGLSAEYAHPLEHLFLGLG---TVMGPAL 187 (283)
T ss_pred CCCcHHH--HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhhhcccCchhHhhhhcCHHHHHHcCCh---hhhhhHH
Confidence 4667665 9999999999999999999999999999999999999999999999999999999988752 4444434
Q ss_pred hhhhHHHHHHHHHHHHHHHhhccccceeecccccccccCCcccccCCchhHHHhhhCCCCCCCCCchhhhhhcCCCCCC
Q 007475 199 LKNASIASFVGYIIYVDFMNNMGHCNFEFIPMWLFTVFPPLKFLMYTPSYHSLHHTQFRTNYSLFMPIYDYIYGTIDRS 277 (602)
Q Consensus 199 lg~~si~~i~~yli~~~~~~~~~Hsgye~~P~~~~~~lP~Lk~li~Tp~~H~lHH~~~~~NYGl~f~lWDrLFGT~~~~ 277 (602)
++. |+.+.++|+++..+.++..||||++ |+++.+.+|+ ..+.++||+||..+.+||+..|+.||||+||+...
T Consensus 188 ~~~-H~~t~wiw~~l~i~~t~~~HsGY~f-Pwsl~~~~pf----y~ga~~HD~HH~~f~~n~~~~f~~~D~i~GTd~~~ 260 (283)
T KOG0873|consen 188 LCG-HVITLWIWIALRILETVESHSGYDF-PWSLSKLIPF----YGGAEHHDYHHLVFIGNFASVFGYLDRIHGTDSTY 260 (283)
T ss_pred hhh-HHHHHHHHHHHHHHHHhhccCCCCC-CccccccCcc----cCCCcccchhhhhccccccchhHHHHHHhccCccH
Confidence 443 9999999999999999999999997 9998888876 35899999999999999999999999999997643
No 4
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=99.94 E-value=7.7e-27 Score=239.24 Aligned_cols=152 Identities=27% Similarity=0.436 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhcccCCccCcCCCcchhhhccchhHHHHHHHHHHHHHHHHHhhhhHHHH
Q 007475 127 GVILTILVHMGPVEFLYYWFHRALHHHYLYSRYHSHHHSSVVTEPITSVIHPFAEHIVYFLLFAIPLVTTMVLKNASIAS 206 (602)
Q Consensus 127 glil~lll~llv~Df~fYW~HRllH~~~LY~riHkvHHss~~p~p~ta~~~hPlE~ll~~~lf~iPll~~~llg~~si~~ 206 (602)
.+++++++.+++.|+.+||.||++|+.++||++|++||++.+|+++++.+.||+|.++......+|+.++ + .+..+
T Consensus 94 ~~~l~~~~~~~~~D~~~Y~~HR~~H~~~~~w~~H~~HH~~~~~~~~t~~~~hp~e~ll~~~~~~~~~~l~---~-~~~~~ 169 (271)
T COG3000 94 PFALQLLLAFLFLDLGYYWAHRLLHRVPLLWAFHKVHHSSEVPDPLTALRFHPLEILLLAFLGLLPLLLL---G-LSPVA 169 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCcccCCchhhhhcChHHHHHHHHHHHHHHHHh---c-CCHHH
Confidence 3577778888899999999999999999999999999999999999999999999999877665665543 3 46667
Q ss_pred HHHHHHHHHHHhhccccceeecccccccccCCcccccCCchhHHHhhhCC--CCCCCCCchhhhhhcCCCCCCCchHHHH
Q 007475 207 FVGYIIYVDFMNNMGHCNFEFIPMWLFTVFPPLKFLMYTPSYHSLHHTQF--RTNYSLFMPIYDYIYGTIDRSSDSVYEK 284 (602)
Q Consensus 207 i~~yli~~~~~~~~~Hsgye~~P~~~~~~lP~Lk~li~Tp~~H~lHH~~~--~~NYGl~f~lWDrLFGT~~~~~~~~~~~ 284 (602)
+..+.++..+....+|||++. | .. +++++.+++||++|++||+++ ++|||.++++|||+|||+.++.++.+++
T Consensus 170 ~~~~~~~~~~~~~~~H~~~~~-~-~~---~~~~~~v~~~p~~H~lHH~~~~~~~Nyg~~~~~WDrlFGT~~~~~~~~~~~ 244 (271)
T COG3000 170 VALLFIFLLFWAVLIHSNLDL-P-LP---LGWLRYVFNTPRHHRLHHSKDPYDKNYGVTLTFWDRLFGTYHPPDEREPDK 244 (271)
T ss_pred HHHHHHHHHHHHHHHhcCccc-c-CC---cccceeeecCchHHHHhccCCCCCCcchhhhHHHHHHcccCCCCcccCccc
Confidence 777777888899999999996 4 22 345666789999999999997 4999999999999999999998887777
Q ss_pred Hhh
Q 007475 285 SLK 287 (602)
Q Consensus 285 ~~~ 287 (602)
...
T Consensus 245 ~~~ 247 (271)
T COG3000 245 IGV 247 (271)
T ss_pred ccc
Confidence 554
No 5
>KOG0872 consensus Sterol C5 desaturase [Lipid transport and metabolism]
Probab=99.89 E-value=1.7e-23 Score=211.09 Aligned_cols=145 Identities=20% Similarity=0.352 Sum_probs=119.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhcccCCccCcCCCcchhhhccchhHHHHHHHHHHHHHHHHHhhhhHH
Q 007475 125 SDGVILTILVHMGPVEFLYYWFHRALHHHYLYSRYHSHHHSSVVTEPITSVIHPFAEHIVYFLLFAIPLVTTMVLKNASI 204 (602)
Q Consensus 125 ~~glil~lll~llv~Df~fYW~HRllH~~~LY~riHkvHHss~~p~p~ta~~~hPlE~ll~~~lf~iPll~~~llg~~si 204 (602)
|...+..+++++++.||.+||.||.+|++.+||+.|+.||.+...+|+++.++||++.+++++ |-....+..+.|.
T Consensus 125 w~~~~~~i~~flfF~Df~iYw~HR~lH~~~vy~~LH~~HH~~~~~tpfAslafhpidg~lqai----p~~I~~Fi~Plh~ 200 (312)
T KOG0872|consen 125 WFLLFVSIFLFLFFTDFGIYWAHRELHHRGVYKRLHKPHHIWNICTPFASLAFHPIDGFLQAI----PYHIYPFIFPLHK 200 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhcchhhhhhccCchhhhhcCcchhHhhhc----hhHheeeeecchH
Confidence 344677788888999999999999999999999999999999999999999999999998864 4433333333455
Q ss_pred HHHHHHHHHHHHHhhccccceeecccccccccCCcccccCCchhHHHhhhCCCCCCCCCchhhhhhcCCCCCCCchHHH
Q 007475 205 ASFVGYIIYVDFMNNMGHCNFEFIPMWLFTVFPPLKFLMYTPSYHSLHHTQFRTNYSLFMPIYDYIYGTIDRSSDSVYE 283 (602)
Q Consensus 205 ~~i~~yli~~~~~~~~~Hsgye~~P~~~~~~lP~Lk~li~Tp~~H~lHH~~~~~NYGl~f~lWDrLFGT~~~~~~~~~~ 283 (602)
.+.++...+..+++++.|.|.-. -+.+.++||++|..||..++.|||.++.+|||+|||+..+.++.++
T Consensus 201 ~t~L~l~~f~~iwt~~IHd~~~~----------~l~~~ingaahHtvHH~~f~~NYG~~tilwDrmfgSfr~p~~~~~d 269 (312)
T KOG0872|consen 201 VTYLSLFTFVNIWTISIHDGIYG----------SLNPPINGAAHHTVHHTYFDYNYGQYTILWDRMFGSFRAPDHEDFD 269 (312)
T ss_pred HHHHHHHHHHHhHheeeeccccc----------cccCccccccccceeeeeEecCCCcEEEeHHhccCcccCccccccc
Confidence 66555666678899999988642 1344578999999999999999999999999999999988776555
No 6
>KOG0874 consensus Sphingolipid hydroxylase [Lipid transport and metabolism]
Probab=99.83 E-value=8.7e-22 Score=193.55 Aligned_cols=145 Identities=21% Similarity=0.350 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhch-hhhhhhcccCCccCcCCCcchhhhccchhHHHHHHHH-HHHHHHHHHhhhhHHH
Q 007475 128 VILTILVHMGPVEFLYYWFHRALHH-HYLYSRYHSHHHSSVVTEPITSVIHPFAEHIVYFLLF-AIPLVTTMVLKNASIA 205 (602)
Q Consensus 128 lil~lll~llv~Df~fYW~HRllH~-~~LY~riHkvHHss~~p~p~ta~~~hPlE~ll~~~lf-~iPll~~~llg~~si~ 205 (602)
...+++..+++.|.+.|++||.||. +.+|+.+|++||+-.+|.+..|.|.||+|.++...+. ++..+. .|. +.-
T Consensus 122 ~A~q~f~aflviDtWQYF~HRymH~NK~LYk~iHs~HHrL~VPYayGALyNhP~EGllLDT~G~gla~l~---sgl-spr 197 (287)
T KOG0874|consen 122 LARQFFAAFLVIDTWQYFLHRYMHMNKFLYKHIHSQHHRLIVPYAYGALYNHPVEGLLLDTIGGGLAFLL---SGL-SPR 197 (287)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhceeEecchhhhhhhcCcchhhhhhhhchHHHHHH---cCC-Ccc
Confidence 3567778889999999999999995 7899999999999999999999999999999887542 222221 222 222
Q ss_pred HHHHHHHHHHHHhhccccceeecccccccccCCcccccCCchhHHHhhhC--CCCCCC-CCchhhhhhcCCCCCCCchHH
Q 007475 206 SFVGYIIYVDFMNNMGHCNFEFIPMWLFTVFPPLKFLMYTPSYHSLHHTQ--FRTNYS-LFMPIYDYIYGTIDRSSDSVY 282 (602)
Q Consensus 206 ~i~~yli~~~~~~~~~Hsgye~~P~~~~~~lP~Lk~li~Tp~~H~lHH~~--~~~NYG-l~f~lWDrLFGT~~~~~~~~~ 282 (602)
+..++..+.++-++.+||||-+ |.++++.+ +-+.+.+||+||+. ...||+ .+|++||+++||+.+.+.|..
T Consensus 198 ~aiifFtfaTiKTVDDHCGy~l-P~dpfqm~-----F~NNa~YHDiHHQ~yG~k~NFsQPFFtfWD~ilgTYmp~~~E~~ 271 (287)
T KOG0874|consen 198 TAIIFFTFATIKTVDDHCGYWL-PGDPFQMF-----FPNNAAYHDIHHQLYGTKYNFSQPFFTFWDRILGTYMPYSLEKR 271 (287)
T ss_pred ceEEEEEeeeeeeecccccccc-CCCceeEe-----ccCCchhhhhhhhhhccccccCCcHHHHHHHHHhhcCCchhccc
Confidence 2233334456677899999976 98877653 23679999999998 679998 689999999999998764443
No 7
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=99.70 E-value=2.5e-17 Score=145.07 Aligned_cols=111 Identities=29% Similarity=0.480 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHhhc-hhhhhhhcccCCccCcCCCcchhhhccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 007475 134 VHMGPVEFLYYWFHRALH-HHYLYSRYHSHHHSSVVTEPITSVIHPFAEHIVYFLLFAIPLVTTMVLKNASIASFVGYII 212 (602)
Q Consensus 134 l~llv~Df~fYW~HRllH-~~~LY~riHkvHHss~~p~p~ta~~~hPlE~ll~~~lf~iPll~~~llg~~si~~i~~yli 212 (602)
+.+++.|+++||+||++| .+++| ++|+.||+.++|+++++.+.+|+|.++..++ ++++..+++..+..++.++.+
T Consensus 3 ~~~l~~d~~~Y~~HRl~H~~~~l~-~~H~~HH~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 78 (114)
T PF04116_consen 3 LGFLLWDFWEYWMHRLLHKIPFLW-RIHKVHHSPKNPTPLSAFRFHPLEALLLALL---PLLLPLLLLPFHALAFLLGIA 78 (114)
T ss_pred eeHHHHHHHHHHHHHHHhcCchHH-HHHHHHhCCcccCchHHHHcChHHHHHHHHH---HHHHHHHHHhHhHHHHHHHHH
Confidence 456788999999999999 55655 9999999999999999999999999987653 333333345556777777788
Q ss_pred HHHHHhhccccceeecccccccccCCcccccCCchhHHHhhh
Q 007475 213 YVDFMNNMGHCNFEFIPMWLFTVFPPLKFLMYTPSYHSLHHT 254 (602)
Q Consensus 213 ~~~~~~~~~Hsgye~~P~~~~~~lP~Lk~li~Tp~~H~lHH~ 254 (602)
+..+.+..+|||+.. + ..+..+++..+|++|+.||+
T Consensus 79 ~~~~~~~~~H~~~~~-~-----~~~~~~~~~~~~~~H~~HH~ 114 (114)
T PF04116_consen 79 LFYLWYIFIHSGYHH-R-----FPPRLRYLFVTPRHHDLHHS 114 (114)
T ss_pred HHHHHHHHhhcCccC-C-----CCCcchhHhcCHHHHHhhCc
Confidence 888899999999921 1 12456777899999999995
No 8
>PLN02434 fatty acid hydroxylase
Probab=99.12 E-value=1.2e-09 Score=110.79 Aligned_cols=136 Identities=21% Similarity=0.296 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-hch-------hhhhhhcccCCccCcCCCcchhhhccchhHHHHHHHHHHHHHHHH--
Q 007475 128 VILTILVHMGPVEFLYYWFHRA-LHH-------HYLYSRYHSHHHSSVVTEPITSVIHPFAEHIVYFLLFAIPLVTTM-- 197 (602)
Q Consensus 128 lil~lll~llv~Df~fYW~HRl-lH~-------~~LY~riHkvHHss~~p~p~ta~~~hPlE~ll~~~lf~iPll~~~-- 197 (602)
.+..+++.+++.-+.+|.+||. +|. ..+..+.|..||.. |.......++|.-.++....+..++..+.
T Consensus 83 ~~~~~~~G~~~wtl~EY~lHRflfH~~p~~~~~~~~hfllHg~HH~~--P~D~~rLv~PP~~~~~l~~~~~~l~~~~~~~ 160 (237)
T PLN02434 83 VVLMVAFGVFIWTLLEYILHRFLFHIKTKSYWGNTAHYLLHGCHHKH--PMDGLRLVFPPAATAILCVPFWNLIALFATP 160 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHhhcC--CCCCCCeecCcHHHHHHHHHHHHHHHHHcch
Confidence 4566777888999999999998 685 23444679999965 34344455777665554433222221110
Q ss_pred -HhhhhHHHHHHHHHHHHHHHhhccccceeecccccccccCCcccccCCchhHHHhhhC-CCCCCCCCchhhhhhcCCCC
Q 007475 198 -VLKNASIASFVGYIIYVDFMNNMGHCNFEFIPMWLFTVFPPLKFLMYTPSYHSLHHTQ-FRTNYSLFMPIYDYIYGTID 275 (602)
Q Consensus 198 -llg~~si~~i~~yli~~~~~~~~~Hsgye~~P~~~~~~lP~Lk~li~Tp~~H~lHH~~-~~~NYGl~f~lWDrLFGT~~ 275 (602)
.....-.+.+.+|+.| +..+...|.+ + |.. ++++. --++|..||-+ .+.|||...++||++|||..
T Consensus 161 ~~a~~~~~G~l~gYl~Y-d~~Hy~lH~~-~--p~~-----~~~r~---lkr~H~~HHfk~~~~~fGVTs~~wD~vFGT~~ 228 (237)
T PLN02434 161 ATAPALFGGGLLGYVMY-DCTHYFLHHG-Q--PST-----DVLRN---LKKYHLNHHFRDQDKGFGITSSLWDRVFGTLP 228 (237)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHhc-C--cch-----HHHHH---HHHHHHHHcCCCCCCCCCcCchHHHHhcCCCC
Confidence 0000112234556554 5566777764 2 321 23332 37899999987 69999999999999999985
Q ss_pred CC
Q 007475 276 RS 277 (602)
Q Consensus 276 ~~ 277 (602)
++
T Consensus 229 ~~ 230 (237)
T PLN02434 229 PS 230 (237)
T ss_pred Cc
Confidence 43
No 9
>PRK14982 acyl-ACP reductase; Provisional
Probab=98.26 E-value=5e-06 Score=88.90 Aligned_cols=196 Identities=14% Similarity=0.194 Sum_probs=122.0
Q ss_pred HhcceEEEeecccCcc---cceeEEee--ccCceeccchhhhHHHHHHHHHHHHHHhcCCeEEeeccccccccccccccc
Q 007475 357 IYGRTFVSESNTLDKL---KLQTWVVP--RYIVQYNLPWRREAINSLIEEAILEADAKGVKVISLGLLNQGEELNRNGEI 431 (602)
Q Consensus 357 ~~~~~f~~~~~~~~~~---~~~tw~ip--r~~~~y~~~~~~~~in~~ie~ai~~a~~~g~kv~sl~~lnk~~~ln~~g~l 431 (602)
....+|++++-.++-- ..+-|.|. -.+=|- ...+.+..=+.|.+|+..|++.|++|..||....--. +++.+
T Consensus 35 ~~~~p~~~~~~~v~S~~g~~~eg~~i~~~~~pe~l-~~~~~~~~~~~~~~a~~~a~~~G~~i~~Lg~~tsiv~--~~~~~ 111 (340)
T PRK14982 35 CSAPPQLVDHIEVTSATGQTIEGKYIESCFLPEML-SNRRFKTARRKVLNAMALAQKKGINITALGGFSSIIF--ENFNL 111 (340)
T ss_pred hhCCCeEeeeEEEEeCCCCEEEEEEEeCCCCHHHH-hccChHHHHHHHHHHHHHHHHCCCeEEEcCChHHHhc--CCccc
Confidence 3346899998888544 44777763 333233 3323444446888899999999999999999876442 22333
Q ss_pred hh-ccCCCCccE---EEeeCCccchhhhhhcCCc---------cCceEEEeccccchhhHHHHHHHhhcC-Cc-EEEeec
Q 007475 432 YL-ERQPNKLKI---KVVDGSSLAAAVVVNSLPK---------TTAHVLLRGTVTANKVANAVASSLCQM-GI-KVATIC 496 (602)
Q Consensus 432 ~~-~~~p~~l~v---rvv~g~tl~aa~vl~~ip~---------~~~~v~l~g~~~~~k~~~aia~~lc~~-~~-~v~~~~ 496 (602)
-+ ++-.+ +.+ ++-+|||+||++....+.. .-+.|++||+++ .+|+.+|..|+++ |+ +|++.+
T Consensus 112 ~~~~~~r~-i~ie~~~~TtGNs~T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG--~IGs~lar~L~~~~gv~~lilv~ 188 (340)
T PRK14982 112 LQHKQVRN-TTLEWERFTTGNTHTAYVICRQVEQNAPRLGIDLSKATVAVVGATG--DIGSAVCRWLDAKTGVAELLLVA 188 (340)
T ss_pred cccccccc-ceeccccccCCchhHHHHHHHHHHHhHHHhccCcCCCEEEEEccCh--HHHHHHHHHHHhhCCCCEEEEEc
Confidence 33 23345 667 7999999999998876632 347899999996 9999999999854 65 666644
Q ss_pred h--hHHHHHHhcCchhhhccceecccccc--ccceE--EEEcC----CCCHHHhhcCCCCCeeeecccCCCc---CC-CC
Q 007475 497 K--DDYEKLKLRIPVEAQHNLVLSTSYAA--HKTKI--WLVGD----DLTGKEQARAPKGTIFIPYTQIPPR---KL-RK 562 (602)
Q Consensus 497 ~--~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~k~--w~vg~----~~~~~eq~~a~~gt~f~~~~~~pp~---~~-r~ 562 (602)
+ ++-+.++.+... ..++ ++.+ +.+.+ ++.|- .+++++ ..+|..++-.. +|.. ++ |.
T Consensus 189 R~~~rl~~La~el~~---~~i~---~l~~~l~~aDiVv~~ts~~~~~~I~~~~---l~~~~~viDiA-vPRDVd~~v~~~ 258 (340)
T PRK14982 189 RQQERLQELQAELGG---GKIL---SLEEALPEADIVVWVASMPKGVEIDPET---LKKPCLMIDGG-YPKNLDTKVQGP 258 (340)
T ss_pred CCHHHHHHHHHHhcc---ccHH---hHHHHHccCCEEEECCcCCcCCcCCHHH---hCCCeEEEEec-CCCCCCcccCCC
Confidence 3 345555554321 1111 1111 22322 44432 244532 25889999888 7765 22 35
Q ss_pred Cccccc
Q 007475 563 DCFYHS 568 (602)
Q Consensus 563 dc~y~~ 568 (602)
|+..-+
T Consensus 259 ~V~v~~ 264 (340)
T PRK14982 259 GIHVLK 264 (340)
T ss_pred CEEEEe
Confidence 555533
No 10
>KOG0539 consensus Sphingolipid fatty acid hydroxylase [Lipid transport and metabolism]
Probab=97.99 E-value=1.9e-05 Score=78.75 Aligned_cols=137 Identities=20% Similarity=0.289 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hchhh---------hhhhcccCCccCcCCCcchhhhccchhHHHHHHHHHHHHHHHHH
Q 007475 129 ILTILVHMGPVEFLYYWFHRA-LHHHY---------LYSRYHSHHHSSVVTEPITSVIHPFAEHIVYFLLFAIPLVTTMV 198 (602)
Q Consensus 129 il~lll~llv~Df~fYW~HRl-lH~~~---------LY~riHkvHHss~~p~p~ta~~~hPlE~ll~~~lf~iPll~~~l 198 (602)
...+++.++...+.+|-+||. +|.+. +---+|..||... ..-....++|.-..+....+..++..+.-
T Consensus 84 ~~~f~~Gvf~WTl~EY~lHRflFH~k~~~~s~~~~t~Hfl~HGcHHk~P--~D~~RLVfPP~~~~il~~pfy~~~~~vl~ 161 (240)
T KOG0539|consen 84 SGLFVIGVFTWTLIEYTLHRFLFHIKPNPDSYWLITLHFLIHGCHHKLP--MDGYRLVFPPTPFAILAAPFYLILSLVLP 161 (240)
T ss_pred hHHHHHHHHHHHHHHHHHHheEEEecCCCCchHHHHHHHHHhcccccCC--CCCceEecCCchHHHHHHHHHHHHHHhcC
Confidence 344566778899999999998 47541 1124799999753 33345678887777665544444332210
Q ss_pred --hh-hhHHHHHHHHHHHHHHHhhccccceeecccccccccCCcccccCCchhHHHhhhC-CCCCCCCCchhhhhhcCCC
Q 007475 199 --LK-NASIASFVGYIIYVDFMNNMGHCNFEFIPMWLFTVFPPLKFLMYTPSYHSLHHTQ-FRTNYSLFMPIYDYIYGTI 274 (602)
Q Consensus 199 --lg-~~si~~i~~yli~~~~~~~~~Hsgye~~P~~~~~~lP~Lk~li~Tp~~H~lHH~~-~~~NYGl~f~lWDrLFGT~ 274 (602)
.+ ..-.+.+++|+.|- ..+..-|-|-- |+. |.++. --.+|.-||-+ .+.-||....+||++|||.
T Consensus 162 ~~~~~a~faG~l~GYV~YD-mtHYyLHhg~p--~~~-----~~~~~---lK~yHl~HHfk~q~~GfGItS~lWD~VFgTl 230 (240)
T KOG0539|consen 162 HPVAPAGFAGGLLGYVCYD-MTHYYLHHGSP--PKR-----PYLKH---LKKYHLNHHFKHQDLGFGITSSLWDYVFGTL 230 (240)
T ss_pred cchhhhhhccchhhhhhhh-hhhhhhhcCCC--CCc-----hHHHH---HHHHHhhhhhhccccCccccHHHHHHHhccC
Confidence 01 11123456777664 44555554421 221 23322 36788889987 8999999999999999998
Q ss_pred CCCC
Q 007475 275 DRSS 278 (602)
Q Consensus 275 ~~~~ 278 (602)
-...
T Consensus 231 ~~~~ 234 (240)
T KOG0539|consen 231 GPLK 234 (240)
T ss_pred CCCc
Confidence 6653
No 11
>PLN02601 beta-carotene hydroxylase
Probab=97.46 E-value=0.0006 Score=70.50 Aligned_cols=132 Identities=20% Similarity=0.318 Sum_probs=70.5
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHh-hchhhhhhhcccCCccCcCCCcchhhhccchhHHHHHHHHHHHHHHH
Q 007475 118 SNLRFWRSDGVILTILVHMGPVEFLYYWFHRA-LHHHYLYSRYHSHHHSSVVTEPITSVIHPFAEHIVYFLLFAIPLVTT 196 (602)
Q Consensus 118 ~~lP~w~~~glil~lll~llv~Df~fYW~HRl-lH~~~LY~riHkvHHss~~p~p~ta~~~hPlE~ll~~~lf~iPll~~ 196 (602)
.++|.-...+.+..++..++..|++-.|.||. ||- +.|..|+-||+...- ++. ..+. .++++++|.+.+
T Consensus 126 g~~p~~em~~~~al~lgtfvgMEf~Aw~aHKYvMHG--~LW~lH~sHH~Pr~g-~FE--~NDl-----FaVifAvpAIaL 195 (303)
T PLN02601 126 GEVSMLEMFGTFALSVGAAVGMEFWARWAHRALWHD--SLWNMHESHHKPREG-AFE--LNDV-----FAIVNAVPAIGL 195 (303)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cchhhhhhcCCCCCC-Ccc--cccc-----hhhhhHHHHHHH
Confidence 45664333333444455667789999999998 676 458899999987642 221 1111 111222333332
Q ss_pred HHhhhhH-----------HHHHHHH-HHHHHHHhhccccceeecccccccccCCcccccCCchhHHHhhhC--CCCCCCC
Q 007475 197 MVLKNAS-----------IASFVGY-IIYVDFMNNMGHCNFEFIPMWLFTVFPPLKFLMYTPSYHSLHHTQ--FRTNYSL 262 (602)
Q Consensus 197 ~llg~~s-----------i~~i~~y-li~~~~~~~~~Hsgye~~P~~~~~~lP~Lk~li~Tp~~H~lHH~~--~~~NYGl 262 (602)
+..|..+ -..+.+| ++|+.+...+.|--+ |......-|+++.+ ...|.+||+. ...+||.
T Consensus 196 ~~~G~~~~g~~p~~~fgiGlGITlYGiaYffVHDgLVHqRf---p~~~~a~~~Y~rrl---~~AHklHHa~Ke~Gv~FGf 269 (303)
T PLN02601 196 LYYGFFNKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRF---PVGPIANVPYLRKV---AAAHQLHHTDKFKGVPYGL 269 (303)
T ss_pred HHHhhccccccHHHHHHHHHhHHHHHHHHHHHhhhhhcccc---ccCCCCCCHHHHHH---HHHHHhhccCCcCCccceE
Confidence 2222210 0112223 234445556667433 33222233556553 7899999983 5789997
Q ss_pred Cch
Q 007475 263 FMP 265 (602)
Q Consensus 263 ~f~ 265 (602)
++.
T Consensus 270 ll~ 272 (303)
T PLN02601 270 FLG 272 (303)
T ss_pred Eec
Confidence 643
No 12
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=97.15 E-value=0.0014 Score=71.80 Aligned_cols=131 Identities=19% Similarity=0.226 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhhchhhhhhhcccCCccCcCCCcc---------hhhhccchhHHHHHHHHHHHHHHHH-Hhh-h-----
Q 007475 138 PVEFLYYWFHRALHHHYLYSRYHSHHHSSVVTEPI---------TSVIHPFAEHIVYFLLFAIPLVTTM-VLK-N----- 201 (602)
Q Consensus 138 v~Df~fYW~HRllH~~~LY~riHkvHHss~~p~p~---------ta~~~hPlE~ll~~~lf~iPll~~~-llg-~----- 201 (602)
..|..+=.+|-+.|....+.|.|..||+...++-- +..|+.|.|+++..++..+|-.... ... .
T Consensus 18 ~~~~~~d~~h~~~h~~~~l~~~h~~hh~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (406)
T PRK07424 18 WVEIVRDSYHALAHQWNPLYRLHNWHHRVFRPDLSVVSEEIYRKAHWYNDVPEALVMLLFGTLPVLLLQQWNVPYGWLAW 97 (406)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHhHHhhcCCcCCcccHHHHhhhhhhcCCHHHHHHHHHhhHHHHHHhhhcccccchhh
Confidence 34444445555555544556899999999887642 3568899997765543223322211 100 0
Q ss_pred hHHHHHHHHH---HHHHHH-------hhccccceeecccccccccCCcccccCCchhHHHhhhCCC-CCCCCCchhhhhh
Q 007475 202 ASIASFVGYI---IYVDFM-------NNMGHCNFEFIPMWLFTVFPPLKFLMYTPSYHSLHHTQFR-TNYSLFMPIYDYI 270 (602)
Q Consensus 202 ~si~~i~~yl---i~~~~~-------~~~~Hsgye~~P~~~~~~lP~Lk~li~Tp~~H~lHH~~~~-~NYGl~f~lWDrL 270 (602)
........|. +..... .-.+|- |..+.+ ++-.| +..+.||-.||-.++ .-||.++++.|+.
T Consensus 98 ~~~~~~~~~~~~~~~r~~~~~~~~~~~d~~h~-----~~~~~~--~~~~~-~v~~~~h~rh~~~~~~~~~~~~~~~~d~~ 169 (406)
T PRK07424 98 LGVLYTLTFLFGAIARGLGLPNADELTDLTHL-----PGPFET--LPSQW-FVNRPYHWRHHFDNQNAYYCGTFTLVDKL 169 (406)
T ss_pred hhhHHHHHHHHHHHHHhcccccccccccccCC-----CCcccC--CCccC-eecCceeEEEEeccccceeeeeEEEeehh
Confidence 0111111122 111110 122342 332211 12233 567899999998865 8889999999999
Q ss_pred cCCCCC
Q 007475 271 YGTIDR 276 (602)
Q Consensus 271 FGT~~~ 276 (602)
.||..+
T Consensus 170 ~~ta~s 175 (406)
T PRK07424 170 MGTALS 175 (406)
T ss_pred cCcccC
Confidence 999753
No 13
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.14 E-value=0.018 Score=56.11 Aligned_cols=51 Identities=25% Similarity=0.338 Sum_probs=42.1
Q ss_pred eCCccchhhhhhcCCcc---------CceEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 446 DGSSLAAAVVVNSLPKT---------TAHVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 446 ~g~tl~aa~vl~~ip~~---------~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
.||++|||+.+.-+.+. -+.|++.|+++ .+|+++|..|+++|.+|.+.+++
T Consensus 2 ~G~~~ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG--~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 2 NGSNTTAAAAVAAAGKALELMGKDLKGKTAVVLGGTG--PVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCcHHHHHHHHHHHHHHHHHhCcCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEcCC
Confidence 59999999887766543 26899999986 99999999999999999985543
No 14
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=94.81 E-value=0.22 Score=52.45 Aligned_cols=100 Identities=21% Similarity=0.165 Sum_probs=71.3
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCeEEeeccccccccccccccchhc-cCCCCccEEEeeCCccchhhhhhcCCc-------
Q 007475 390 WRREAINSLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLE-RQPNKLKIKVVDGSSLAAAVVVNSLPK------- 461 (602)
Q Consensus 390 ~~~~~in~~ie~ai~~a~~~g~kv~sl~~lnk~~~ln~~g~l~~~-~~p~~l~vrvv~g~tl~aa~vl~~ip~------- 461 (602)
++-+++-+-+-+|+.-|+|.|+.|.+||..-- .=++=+..++ +.|+---+|+-.|||+||=++...+=+
T Consensus 87 s~pkaatrrvl~a~~~a~~~Ga~V~gLGgFss---IVgn~~~n~q~~~~e~t~~~~ttgns~Tayaa~r~Vl~~~~~lGi 163 (351)
T COG5322 87 SRPKAATRRVLNAMALAQKLGADVTGLGGFSS---IVGNLGQNVQVRNVELTFTRFTTGNSHTAYAACRQVLKHFAQLGI 163 (351)
T ss_pred hCHHHHHHHHHHHHHHHHHcCCeEEeecchhh---hhccccccccccceEEEEEecccCCccchHHHHHHHHHHHHHhCc
Confidence 34667777778888899999999999997531 1111111122 556623468889999999998877733
Q ss_pred --cCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 462 --TTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 462 --~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
.-.+|=.+|+++ -+|.|||..|.-++-+..|
T Consensus 164 dlsqatvaivGa~G--~Ia~~Iar~la~~~~~~~l 196 (351)
T COG5322 164 DLSQATVAIVGATG--DIASAIARWLAPKVGVKEL 196 (351)
T ss_pred CHHHCeEEEecCCc--hHHHHHHHHhccccCEEEE
Confidence 223799999997 9999999999966555555
No 15
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=93.08 E-value=0.18 Score=49.92 Aligned_cols=55 Identities=18% Similarity=0.355 Sum_probs=40.1
Q ss_pred HHHhhccccceeeccccc--ccccCCcccccCCchhHHHhhhC-CCCCCCCCchhhhhhcCCC
Q 007475 215 DFMNNMGHCNFEFIPMWL--FTVFPPLKFLMYTPSYHSLHHTQ-FRTNYSLFMPIYDYIYGTI 274 (602)
Q Consensus 215 ~~~~~~~Hsgye~~P~~~--~~~lP~Lk~li~Tp~~H~lHH~~-~~~NYGl~f~lWDrLFGT~ 274 (602)
...+-+.|.... .|.+. .+..+ ++.+|++|..||.. +++|||...++|+.+....
T Consensus 99 nq~HkWsH~~~~-~P~~V~~LQ~~g----illsr~~H~~HH~aPh~~~YCI~tGw~N~~Ld~~ 156 (178)
T PF10520_consen 99 NQFHKWSHTYKS-LPPWVRFLQDAG----ILLSRKHHRIHHVAPHDTNYCITTGWLNPPLDKI 156 (178)
T ss_pred HHHHHHHcCCCC-CCHHHHHHHHCC----cccCchhhhccccCcccCCeEeecccchHHHHHh
Confidence 444677888655 46542 12222 45689999999999 8999999999999887653
No 16
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=92.30 E-value=0.29 Score=46.15 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=27.6
Q ss_pred EEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 466 VLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 466 v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
|+++|+|+ ++|++++..|.++|.+|..++++
T Consensus 1 I~V~GatG--~vG~~l~~~L~~~~~~V~~~~R~ 31 (183)
T PF13460_consen 1 ILVFGATG--FVGRALAKQLLRRGHEVTALVRS 31 (183)
T ss_dssp EEEETTTS--HHHHHHHHHHHHTTSEEEEEESS
T ss_pred eEEECCCC--hHHHHHHHHHHHCCCEEEEEecC
Confidence 78999996 99999999999999999995443
No 17
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=91.80 E-value=0.22 Score=51.47 Aligned_cols=44 Identities=25% Similarity=0.319 Sum_probs=38.5
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEe--echhHHHHHHhcCch
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVAT--ICKDDYEKLKLRIPV 509 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~--~~~~~~~~~~~~~~~ 509 (602)
|=|++|||+ |=+|.|+|..|++.|.+|++ =+.|+-+.|+.+.++
T Consensus 7 kv~lITGAS--SGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~ 52 (246)
T COG4221 7 KVALITGAS--SGIGEATARALAEAGAKVVLAARREERLEALADEIGA 52 (246)
T ss_pred cEEEEecCc--chHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc
Confidence 568999999 69999999999999999999 566778888888665
No 18
>PRK09186 flagellin modification protein A; Provisional
Probab=90.20 E-value=0.62 Score=46.05 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=28.2
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
|.|++||+++ -+|+++|..|+++|.+|++++
T Consensus 5 k~vlItGas~--giG~~~a~~l~~~g~~v~~~~ 35 (256)
T PRK09186 5 KTILITGAGG--LIGSALVKAILEAGGIVIAAD 35 (256)
T ss_pred CEEEEECCCc--hHHHHHHHHHHHCCCEEEEEe
Confidence 6799999994 999999999999999999954
No 19
>PRK06482 short chain dehydrogenase; Provisional
Probab=90.07 E-value=0.48 Score=47.79 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=32.2
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEeech--hHHHHHHhc
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATICK--DDYEKLKLR 506 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~--~~~~~~~~~ 506 (602)
+|.|++||+++ -+|+++|.+|.++|.+|....+ ++-+.++.+
T Consensus 2 ~k~vlVtGasg--~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~ 45 (276)
T PRK06482 2 SKTWFITGASS--GFGRGMTERLLARGDRVAATVRRPDALDDLKAR 45 (276)
T ss_pred CCEEEEecCCC--HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh
Confidence 36799999994 9999999999999999988433 334444433
No 20
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=89.73 E-value=0.6 Score=53.78 Aligned_cols=60 Identities=20% Similarity=0.454 Sum_probs=45.9
Q ss_pred ccCCCCccEEEee------CCccchhhhhhcCCc-----cCceEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 434 ERQPNKLKIKVVD------GSSLAAAVVVNSLPK-----TTAHVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 434 ~~~p~~l~vrvv~------g~tl~aa~vl~~ip~-----~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
+|||..-+.|..| |.+...+.+..-+|+ +-+-|++||+++ .+|++++..|+++|.+|...
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gKvVLVTGATG--gIG~aLAr~LLk~G~~Vval 110 (576)
T PLN03209 40 SKHPHSRKLRSLDIKAQASGATKFSSAAIEAIPKELDTKDEDLAFVAGATG--KVGSRTVRELLKLGFRVRAG 110 (576)
T ss_pred ccCcccccccccchhhccccchhhhhhhhhccccccccCCCCEEEEECCCC--HHHHHHHHHHHHCCCeEEEE
Confidence 4667645555554 555666777777885 335799999995 99999999999999999873
No 21
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=89.22 E-value=0.54 Score=46.37 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=30.1
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEeechhH
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATICKDD 499 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~~ 499 (602)
-|.|++||+++ =+|+++|..|+++|.+|++.++.+
T Consensus 5 ~k~vlItGas~--gIG~~ia~~l~~~G~~vi~~~r~~ 39 (248)
T TIGR01832 5 GKVALVTGANT--GLGQGIAVGLAEAGADIVGAGRSE 39 (248)
T ss_pred CCEEEEECCCc--hHHHHHHHHHHHCCCEEEEEcCch
Confidence 36799999994 899999999999999999855543
No 22
>PRK07454 short chain dehydrogenase; Provisional
Probab=88.85 E-value=1 Score=44.32 Aligned_cols=33 Identities=18% Similarity=0.395 Sum_probs=29.4
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
-|-|++||++ +.+|+++|..|+++|.+|.++++
T Consensus 6 ~k~vlItG~s--g~iG~~la~~l~~~G~~V~~~~r 38 (241)
T PRK07454 6 MPRALITGAS--SGIGKATALAFAKAGWDLALVAR 38 (241)
T ss_pred CCEEEEeCCC--chHHHHHHHHHHHCCCEEEEEeC
Confidence 4679999999 49999999999999999999554
No 23
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=88.84 E-value=0.4 Score=51.15 Aligned_cols=42 Identities=21% Similarity=0.414 Sum_probs=34.7
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech--hHHHHHHhcC
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK--DDYEKLKLRI 507 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~--~~~~~~~~~~ 507 (602)
+=...||+| +++|+|.|.-|||||.+|.++|+ |+-+.+++|.
T Consensus 50 ~WAVVTGaT--DGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI 93 (312)
T KOG1014|consen 50 SWAVVTGAT--DGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEI 93 (312)
T ss_pred CEEEEECCC--CcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 457899999 59999999999999999999554 4667777773
No 24
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=88.64 E-value=0.68 Score=48.51 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=38.2
Q ss_pred ccCceEEEeccccchhhHHHHHHHhhcCCcEEEe--echhHHHHHHhcCch
Q 007475 461 KTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT--ICKDDYEKLKLRIPV 509 (602)
Q Consensus 461 ~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~--~~~~~~~~~~~~~~~ 509 (602)
..-+-++.|||+ |.+|+++|..|.+||..|+. =++|+-+.|+++.-.
T Consensus 4 ~~~~~~lITGAS--sGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~ 52 (265)
T COG0300 4 MKGKTALITGAS--SGIGAELAKQLARRGYNLILVARREDKLEALAKELED 52 (265)
T ss_pred CCCcEEEEECCC--chHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH
Confidence 344678999999 59999999999999999999 355677777777443
No 25
>PRK08264 short chain dehydrogenase; Validated
Probab=88.32 E-value=0.51 Score=46.21 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=28.6
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCc-EEEeechh
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGI-KVATICKD 498 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~-~v~~~~~~ 498 (602)
+.|++||++ +.+|+++|..|+++|. +|++..++
T Consensus 7 ~~vlItGgs--g~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 7 KVVLVTGAN--RGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred CEEEEECCC--chHHHHHHHHHHHCCcccEEEEecC
Confidence 569999999 4999999999999999 98885443
No 26
>PRK08265 short chain dehydrogenase; Provisional
Probab=88.21 E-value=0.7 Score=46.48 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=29.1
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
|-|++||++ +-+|++||..|+++|.+|++.+++
T Consensus 7 k~vlItGas--~gIG~~ia~~l~~~G~~V~~~~r~ 39 (261)
T PRK08265 7 KVAIVTGGA--TLIGAAVARALVAAGARVAIVDID 39 (261)
T ss_pred CEEEEECCC--ChHHHHHHHHHHHCCCEEEEEeCC
Confidence 678999999 499999999999999999985443
No 27
>PRK06924 short chain dehydrogenase; Provisional
Probab=88.19 E-value=0.62 Score=45.99 Aligned_cols=32 Identities=28% Similarity=0.475 Sum_probs=28.5
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|.|++||+++ -+|++||..|+++|.+|+++++
T Consensus 2 k~vlItGasg--giG~~ia~~l~~~g~~V~~~~r 33 (251)
T PRK06924 2 RYVIITGTSQ--GLGEAIANQLLEKGTHVISISR 33 (251)
T ss_pred cEEEEecCCc--hHHHHHHHHHHhcCCEEEEEeC
Confidence 5799999994 9999999999999999998543
No 28
>PRK06841 short chain dehydrogenase; Provisional
Probab=87.96 E-value=0.6 Score=46.24 Aligned_cols=35 Identities=17% Similarity=0.346 Sum_probs=30.2
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEeechhH
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATICKDD 499 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~~ 499 (602)
-|.|++||+++ -+|+++|..|+++|.+|+++++++
T Consensus 15 ~k~vlItGas~--~IG~~la~~l~~~G~~Vi~~~r~~ 49 (255)
T PRK06841 15 GKVAVVTGGAS--GIGHAIAELFAAKGARVALLDRSE 49 (255)
T ss_pred CCEEEEECCCC--hHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35799999995 999999999999999999865543
No 29
>PRK05867 short chain dehydrogenase; Provisional
Probab=87.89 E-value=0.87 Score=45.32 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=29.4
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
.-|-|++||++ +=+|+++|..|.++|.+|++.++
T Consensus 8 ~~k~vlVtGas--~gIG~~ia~~l~~~G~~V~~~~r 41 (253)
T PRK05867 8 HGKRALITGAS--TGIGKRVALAYVEAGAQVAIAAR 41 (253)
T ss_pred CCCEEEEECCC--chHHHHHHHHHHHCCCEEEEEcC
Confidence 34779999999 48999999999999999998443
No 30
>PRK06196 oxidoreductase; Provisional
Probab=87.82 E-value=0.94 Score=47.08 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=34.3
Q ss_pred hhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 452 AAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 452 aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
+.-++|.++-.-|-|++||+++ -+|+++|..|.++|.+|++..
T Consensus 15 ~~~~~~~~~l~~k~vlITGasg--gIG~~~a~~L~~~G~~Vv~~~ 57 (315)
T PRK06196 15 AEEVLAGHDLSGKTAIVTGGYS--GLGLETTRALAQAGAHVIVPA 57 (315)
T ss_pred HHHHhcCCCCCCCEEEEeCCCc--hHHHHHHHHHHHCCCEEEEEe
Confidence 3444565554447899999994 999999999999999999844
No 31
>PRK07577 short chain dehydrogenase; Provisional
Probab=87.81 E-value=0.56 Score=45.74 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=29.0
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
|.|++||+++ -+|+++|..|+++|.+|+.++++
T Consensus 4 k~vlItG~s~--~iG~~ia~~l~~~G~~v~~~~r~ 36 (234)
T PRK07577 4 RTVLVTGATK--GIGLALSLRLANLGHQVIGIARS 36 (234)
T ss_pred CEEEEECCCC--cHHHHHHHHHHHCCCEEEEEeCC
Confidence 5799999994 99999999999999999985443
No 32
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.33 E-value=0.79 Score=44.47 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=26.8
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+.|++||+++ .+|+++|..|+++|.+|++
T Consensus 7 ~~vlItGasg--~iG~~l~~~l~~~g~~v~~ 35 (249)
T PRK12825 7 RVALVTGAAR--GLGRAIALRLARAGADVVV 35 (249)
T ss_pred CEEEEeCCCc--hHHHHHHHHHHHCCCeEEE
Confidence 5799999995 9999999999999999877
No 33
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=86.88 E-value=1.1 Score=43.68 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=26.7
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+.|++||+++ .+|+++|..|+++|.+|++
T Consensus 6 ~~vlItG~sg--~iG~~l~~~l~~~G~~v~~ 34 (248)
T PRK05557 6 KVALVTGASR--GIGRAIAERLAAQGANVVI 34 (248)
T ss_pred CEEEEECCCc--hHHHHHHHHHHHCCCEEEE
Confidence 5799999994 9999999999999999966
No 34
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=86.87 E-value=0.59 Score=47.56 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=27.1
Q ss_pred EEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 466 VLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 466 v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|++||+|+ ++|++++.+|.++|.+|...++
T Consensus 2 ilVtGatG--~iG~~vv~~L~~~g~~V~~~~R 31 (285)
T TIGR03649 2 ILLTGGTG--KTASRIARLLQAASVPFLVASR 31 (285)
T ss_pred EEEEcCCC--hHHHHHHHHHHhCCCcEEEEeC
Confidence 79999996 9999999999999999988544
No 35
>PRK06179 short chain dehydrogenase; Provisional
Probab=86.83 E-value=0.73 Score=46.23 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=28.7
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
+-|++||++ +-+|+++|..|+++|.+|+...++
T Consensus 5 ~~vlVtGas--g~iG~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 5 KVALVTGAS--SGIGRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred CEEEEecCC--CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 469999999 599999999999999999985443
No 36
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=86.57 E-value=0.76 Score=44.97 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=28.8
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
+-|++||+++ -+|+++|.+|+++|.+|+++++.
T Consensus 7 ~~ilItGasg--~iG~~l~~~l~~~g~~V~~~~r~ 39 (251)
T PRK12826 7 RVALVTGAAR--GIGRAIAVRLAADGAEVIVVDIC 39 (251)
T ss_pred CEEEEcCCCC--cHHHHHHHHHHHCCCEEEEEeCC
Confidence 4689999994 99999999999999999885543
No 37
>PRK07890 short chain dehydrogenase; Provisional
Probab=86.51 E-value=0.97 Score=44.73 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=28.6
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|.||+||++ +=||+++|..|+++|.+|++.++
T Consensus 6 k~vlItGa~--~~IG~~la~~l~~~G~~V~~~~r 37 (258)
T PRK07890 6 KVVVVSGVG--PGLGRTLAVRAARAGADVVLAAR 37 (258)
T ss_pred CEEEEECCC--CcHHHHHHHHHHHcCCEEEEEeC
Confidence 569999999 49999999999999999999543
No 38
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=86.49 E-value=0.97 Score=45.26 Aligned_cols=32 Identities=13% Similarity=0.268 Sum_probs=28.7
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|-|++||++ +=+|+++|..|+++|.+|++.++
T Consensus 9 k~~lItGas--~gIG~aia~~l~~~G~~vv~~~~ 40 (251)
T PRK12481 9 KVAIITGCN--TGLGQGMAIGLAKAGADIVGVGV 40 (251)
T ss_pred CEEEEeCCC--chHHHHHHHHHHHCCCEEEEecC
Confidence 678999999 58999999999999999998544
No 39
>PRK09135 pteridine reductase; Provisional
Probab=86.39 E-value=1.2 Score=43.56 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=28.7
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
.+.|++||+++ =||+++|..|+++|.+|+..+
T Consensus 6 ~~~vlItGa~g--~iG~~l~~~l~~~g~~v~~~~ 37 (249)
T PRK09135 6 AKVALITGGAR--RIGAAIARTLHAAGYRVAIHY 37 (249)
T ss_pred CCEEEEeCCCc--hHHHHHHHHHHHCCCEEEEEc
Confidence 46799999994 999999999999999999854
No 40
>PRK06182 short chain dehydrogenase; Validated
Probab=86.36 E-value=0.8 Score=46.20 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=28.5
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
+.|++||++ +.+|+++|..|+++|.+|+...+
T Consensus 4 k~vlItGas--ggiG~~la~~l~~~G~~V~~~~r 35 (273)
T PRK06182 4 KVALVTGAS--SGIGKATARRLAAQGYTVYGAAR 35 (273)
T ss_pred CEEEEECCC--ChHHHHHHHHHHHCCCEEEEEeC
Confidence 679999999 59999999999999999998443
No 41
>PRK05854 short chain dehydrogenase; Provisional
Probab=86.29 E-value=1 Score=47.15 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=28.1
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
|-|++||++ +=+|+++|..|+++|.+|++..
T Consensus 15 k~~lITGas--~GIG~~~a~~La~~G~~Vil~~ 45 (313)
T PRK05854 15 KRAVVTGAS--DGLGLGLARRLAAAGAEVILPV 45 (313)
T ss_pred CEEEEeCCC--ChHHHHHHHHHHHCCCEEEEEe
Confidence 678999999 5999999999999999999843
No 42
>PRK08177 short chain dehydrogenase; Provisional
Probab=86.27 E-value=0.8 Score=44.81 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=28.4
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
+.|++||++ +.+|+++|..|+++|.+|+.+++
T Consensus 2 k~vlItG~s--g~iG~~la~~l~~~G~~V~~~~r 33 (225)
T PRK08177 2 RTALIIGAS--RGLGLGLVDRLLERGWQVTATVR 33 (225)
T ss_pred CEEEEeCCC--chHHHHHHHHHHhCCCEEEEEeC
Confidence 569999999 49999999999999999998443
No 43
>PRK06949 short chain dehydrogenase; Provisional
Probab=86.26 E-value=1.3 Score=43.83 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=33.3
Q ss_pred ccCceEEEeccccchhhHHHHHHHhhcCCcEEEeec--hhHHHHHHh
Q 007475 461 KTTAHVLLRGTVTANKVANAVASSLCQMGIKVATIC--KDDYEKLKL 505 (602)
Q Consensus 461 ~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~--~~~~~~~~~ 505 (602)
..-+.|++||+++ =+|+++|..|+++|.+|+... .++-+.++.
T Consensus 7 ~~~k~ilItGasg--~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~ 51 (258)
T PRK06949 7 LEGKVALVTGASS--GLGARFAQVLAQAGAKVVLASRRVERLKELRA 51 (258)
T ss_pred CCCCEEEEECCCc--HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3447899999994 999999999999999999843 344444443
No 44
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.26 E-value=1 Score=48.16 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=37.4
Q ss_pred cchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 450 LAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 450 l~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
.+|-.+.+.++-.-+-+..||++ |-+|+++|..|++||.+|+|..+
T Consensus 22 ~~~~~~~~~~~~~~~~~vVTGan--sGIG~eta~~La~~Ga~Vv~~~R 67 (314)
T KOG1208|consen 22 TTALEVTHGIDLSGKVALVTGAT--SGIGFETARELALRGAHVVLACR 67 (314)
T ss_pred eecceeeccccCCCcEEEEECCC--CchHHHHHHHHHhCCCEEEEEeC
Confidence 34445667776666889999999 59999999999999999999433
No 45
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=86.08 E-value=1.1 Score=44.09 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=28.0
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|-|++||+++ -||+++|..|+++|.+|++.++
T Consensus 2 ~~vlItGa~g--~lG~~l~~~l~~~g~~v~~~~r 33 (255)
T TIGR01963 2 KTALVTGAAS--GIGLAIALALAAAGANVVVNDL 33 (255)
T ss_pred CEEEEcCCcc--hHHHHHHHHHHHCCCEEEEEeC
Confidence 4589999995 9999999999999999998443
No 46
>PRK07063 short chain dehydrogenase; Provisional
Probab=86.06 E-value=1.1 Score=44.70 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=27.8
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
|.|++||++ +=+|+++|..|+++|.+|++.+
T Consensus 8 k~vlVtGas--~gIG~~~a~~l~~~G~~vv~~~ 38 (260)
T PRK07063 8 KVALVTGAA--QGIGAAIARAFAREGAAVALAD 38 (260)
T ss_pred CEEEEECCC--chHHHHHHHHHHHCCCEEEEEe
Confidence 579999999 4899999999999999998843
No 47
>PRK05993 short chain dehydrogenase; Provisional
Probab=86.04 E-value=1.1 Score=45.51 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=28.4
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
+-|++||++ +-+|+++|..|+++|.+|++.++
T Consensus 5 k~vlItGas--ggiG~~la~~l~~~G~~Vi~~~r 36 (277)
T PRK05993 5 RSILITGCS--SGIGAYCARALQSDGWRVFATCR 36 (277)
T ss_pred CEEEEeCCC--cHHHHHHHHHHHHCCCEEEEEEC
Confidence 579999999 49999999999999999998443
No 48
>PRK06197 short chain dehydrogenase; Provisional
Probab=86.00 E-value=0.9 Score=46.86 Aligned_cols=38 Identities=16% Similarity=0.317 Sum_probs=31.2
Q ss_pred cCCc-cCceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 458 SLPK-TTAHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 458 ~ip~-~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
.+|+ .-|-|++||++ +-+|+++|..|+++|.+|++.++
T Consensus 10 ~~~~~~~k~vlItGas--~gIG~~~a~~l~~~G~~vi~~~r 48 (306)
T PRK06197 10 DIPDQSGRVAVVTGAN--TGLGYETAAALAAKGAHVVLAVR 48 (306)
T ss_pred ccccCCCCEEEEcCCC--CcHHHHHHHHHHHCCCEEEEEeC
Confidence 3454 34789999999 49999999999999999988443
No 49
>PRK12829 short chain dehydrogenase; Provisional
Probab=85.99 E-value=1.3 Score=43.92 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=28.9
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
+.|++||+++ -+|+++|..|+++|.+|+++.+
T Consensus 12 ~~vlItGa~g--~iG~~~a~~L~~~g~~V~~~~r 43 (264)
T PRK12829 12 LRVLVTGGAS--GIGRAIAEAFAEAGARVHVCDV 43 (264)
T ss_pred CEEEEeCCCC--cHHHHHHHHHHHCCCEEEEEeC
Confidence 6899999995 9999999999999999988554
No 50
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.93 E-value=1.2 Score=43.76 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=26.7
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+.|++||+++ .+|+++|.+|+++|.+|++
T Consensus 5 ~~vlItGa~g--~iG~~~a~~l~~~g~~v~~ 33 (250)
T PRK08063 5 KVALVTGSSR--GIGKAIALRLAEEGYDIAV 33 (250)
T ss_pred CEEEEeCCCc--hHHHHHHHHHHHCCCEEEE
Confidence 5799999994 9999999999999999876
No 51
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=85.91 E-value=1.4 Score=43.86 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=29.6
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
-|.|++||+++ -+|+++|..|+++|.+|++.+++
T Consensus 10 ~k~vlItGa~g--~iG~~ia~~l~~~G~~V~~~~r~ 43 (255)
T PRK07523 10 GRRALVTGSSQ--GIGYALAEGLAQAGAEVILNGRD 43 (255)
T ss_pred CCEEEEECCcc--hHHHHHHHHHHHcCCEEEEEeCC
Confidence 46899999995 99999999999999999985443
No 52
>PRK07326 short chain dehydrogenase; Provisional
Probab=85.87 E-value=1.1 Score=43.75 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=28.7
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
+.|++||+++ .+|+++|.+|.++|.+|+++++
T Consensus 7 ~~ilItGatg--~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSK--GIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred CEEEEECCCC--cHHHHHHHHHHHCCCEEEEeeC
Confidence 6799999995 9999999999999999998554
No 53
>PLN02780 ketoreductase/ oxidoreductase
Probab=85.77 E-value=1.1 Score=47.46 Aligned_cols=32 Identities=16% Similarity=0.421 Sum_probs=28.3
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
+-|++||++ +-+|+++|..|+++|.+|++.++
T Consensus 54 ~~~lITGAs--~GIG~alA~~La~~G~~Vil~~R 85 (320)
T PLN02780 54 SWALVTGPT--DGIGKGFAFQLARKGLNLVLVAR 85 (320)
T ss_pred CEEEEeCCC--cHHHHHHHHHHHHCCCCEEEEEC
Confidence 568999999 59999999999999999998443
No 54
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=85.57 E-value=1.3 Score=45.62 Aligned_cols=31 Identities=23% Similarity=0.209 Sum_probs=27.9
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
+.|++||+++ -||+++|.+|.++|.+|..+.
T Consensus 5 ~~ilVtGatG--fIG~~l~~~L~~~g~~V~~~~ 35 (322)
T PLN02662 5 KVVCVTGASG--YIASWLVKLLLQRGYTVKATV 35 (322)
T ss_pred CEEEEECChH--HHHHHHHHHHHHCCCEEEEEE
Confidence 6799999995 999999999999999998643
No 55
>PRK08589 short chain dehydrogenase; Validated
Probab=85.48 E-value=1.1 Score=45.43 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=29.0
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
|-|++||++ +-+|++||..|+++|.+|++.++.
T Consensus 7 k~vlItGas--~gIG~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 7 KVAVITGAS--TGIGQASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CEEEEECCC--chHHHHHHHHHHHCCCEEEEEeCc
Confidence 568999999 499999999999999999995443
No 56
>PRK09291 short chain dehydrogenase; Provisional
Probab=85.40 E-value=1 Score=44.55 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=28.0
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
+.|++||+++ -+|+++|..|+++|.+|+...+
T Consensus 3 ~~vlVtGasg--~iG~~ia~~l~~~G~~v~~~~r 34 (257)
T PRK09291 3 KTILITGAGS--GFGREVALRLARKGHNVIAGVQ 34 (257)
T ss_pred CEEEEeCCCC--HHHHHHHHHHHHCCCEEEEEeC
Confidence 4689999995 9999999999999999988443
No 57
>PRK06398 aldose dehydrogenase; Validated
Probab=85.37 E-value=0.89 Score=45.71 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=28.6
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|.|++||++ +-+|+++|..|+++|.+|++.++
T Consensus 7 k~vlItGas--~gIG~~ia~~l~~~G~~Vi~~~r 38 (258)
T PRK06398 7 KVAIVTGGS--QGIGKAVVNRLKEEGSNVINFDI 38 (258)
T ss_pred CEEEEECCC--chHHHHHHHHHHHCCCeEEEEeC
Confidence 679999999 59999999999999999998543
No 58
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=85.20 E-value=1.3 Score=43.64 Aligned_cols=31 Identities=23% Similarity=0.296 Sum_probs=27.9
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
+.|++||++ +.+|+++|..|.++|.+|.++.
T Consensus 5 ~~vlItG~s--g~iG~~la~~l~~~g~~v~~~~ 35 (258)
T PRK12429 5 KVALVTGAA--SGIGLEIALALAKEGAKVVIAD 35 (258)
T ss_pred CEEEEECCC--chHHHHHHHHHHHCCCeEEEEe
Confidence 579999999 4999999999999999998843
No 59
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=85.16 E-value=1.3 Score=44.40 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=27.7
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
.|++||++ +-+|++||..|+++|.+|.+.++
T Consensus 2 ~vlItGas--~gIG~aia~~l~~~G~~V~~~~r 32 (259)
T PRK08340 2 NVLVTASS--RGIGFNVARELLKKGARVVISSR 32 (259)
T ss_pred eEEEEcCC--cHHHHHHHHHHHHcCCEEEEEeC
Confidence 58999999 59999999999999999998544
No 60
>PRK07478 short chain dehydrogenase; Provisional
Probab=85.12 E-value=1.3 Score=44.05 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=28.3
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|-|++||++ +-+|+++|..|+++|.+|++.++
T Consensus 7 k~~lItGas--~giG~~ia~~l~~~G~~v~~~~r 38 (254)
T PRK07478 7 KVAIITGAS--SGIGRAAAKLFAREGAKVVVGAR 38 (254)
T ss_pred CEEEEeCCC--ChHHHHHHHHHHHCCCEEEEEeC
Confidence 568999999 49999999999999999998543
No 61
>PRK12742 oxidoreductase; Provisional
Probab=85.09 E-value=1.4 Score=43.00 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=27.7
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
-|.|++||++ +-||+++|..|.++|.+|++.
T Consensus 6 ~k~vlItGas--ggIG~~~a~~l~~~G~~v~~~ 36 (237)
T PRK12742 6 GKKVLVLGGS--RGIGAAIVRRFVTDGANVRFT 36 (237)
T ss_pred CCEEEEECCC--ChHHHHHHHHHHHCCCEEEEe
Confidence 3689999999 499999999999999999873
No 62
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=85.08 E-value=1.1 Score=43.59 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=28.8
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
+.|++||+++ .+|+++|..|.++|.+|.+++++
T Consensus 6 ~~ilItGasg--~iG~~l~~~l~~~g~~v~~~~r~ 38 (246)
T PRK05653 6 KTALVTGASR--GIGRAIALRLAADGAKVVIYDSN 38 (246)
T ss_pred CEEEEECCCc--HHHHHHHHHHHHCCCEEEEEeCC
Confidence 5699999994 99999999999999999885543
No 63
>PRK06523 short chain dehydrogenase; Provisional
Probab=85.00 E-value=0.98 Score=44.95 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=29.2
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
+.|++||+++ -||+++|..|+++|.+|+..+++
T Consensus 10 k~vlItGas~--gIG~~ia~~l~~~G~~v~~~~r~ 42 (260)
T PRK06523 10 KRALVTGGTK--GIGAATVARLLEAGARVVTTARS 42 (260)
T ss_pred CEEEEECCCC--chhHHHHHHHHHCCCEEEEEeCC
Confidence 6799999995 99999999999999999985543
No 64
>PRK07856 short chain dehydrogenase; Provisional
Probab=84.93 E-value=1 Score=44.77 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=29.7
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
-|.+++||+++ -+|+++|..|+++|.+|++++++
T Consensus 6 ~k~~lItGas~--gIG~~la~~l~~~g~~v~~~~r~ 39 (252)
T PRK07856 6 GRVVLVTGGTR--GIGAGIARAFLAAGATVVVCGRR 39 (252)
T ss_pred CCEEEEeCCCc--hHHHHHHHHHHHCCCEEEEEeCC
Confidence 47789999994 99999999999999999985543
No 65
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=84.93 E-value=1.6 Score=43.37 Aligned_cols=39 Identities=15% Similarity=0.225 Sum_probs=32.3
Q ss_pred hcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 457 NSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 457 ~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
+++.-.-|.|++||++ +-+|+++|..|+++|.+|++.++
T Consensus 5 ~~~~~~~k~ilItGas--~~IG~~la~~l~~~G~~v~~~~r 43 (256)
T PRK06124 5 QRFSLAGQVALVTGSA--RGLGFEIARALAGAGAHVLVNGR 43 (256)
T ss_pred cccCCCCCEEEEECCC--chHHHHHHHHHHHcCCeEEEEeC
Confidence 3444456789999999 49999999999999999999544
No 66
>PRK07062 short chain dehydrogenase; Provisional
Probab=84.61 E-value=1.4 Score=44.14 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=28.9
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
-|-+++||++ +-+|+++|..|.++|.+|++.++
T Consensus 8 ~k~~lItGas--~giG~~ia~~l~~~G~~V~~~~r 40 (265)
T PRK07062 8 GRVAVVTGGS--SGIGLATVELLLEAGASVAICGR 40 (265)
T ss_pred CCEEEEeCCC--chHHHHHHHHHHHCCCeEEEEeC
Confidence 4679999999 59999999999999999998443
No 67
>PRK05717 oxidoreductase; Validated
Probab=84.46 E-value=1.8 Score=43.17 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=30.6
Q ss_pred CCccCceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 459 LPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 459 ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
++..-|-|++||+++ -+|+++|..|.++|.+|++++
T Consensus 6 ~~~~~k~vlItG~sg--~IG~~~a~~l~~~g~~v~~~~ 41 (255)
T PRK05717 6 PGHNGRVALVTGAAR--GIGLGIAAWLIAEGWQVVLAD 41 (255)
T ss_pred cccCCCEEEEeCCcc--hHHHHHHHHHHHcCCEEEEEc
Confidence 344557799999994 999999999999999999853
No 68
>PRK07102 short chain dehydrogenase; Provisional
Probab=84.43 E-value=1.1 Score=44.09 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=28.8
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
+.|++||++ +-+|+++|..|+++|.+|++.+++
T Consensus 2 ~~vlItGas--~giG~~~a~~l~~~G~~Vi~~~r~ 34 (243)
T PRK07102 2 KKILIIGAT--SDIARACARRYAAAGARLYLAARD 34 (243)
T ss_pred cEEEEEcCC--cHHHHHHHHHHHhcCCEEEEEeCC
Confidence 568999999 499999999999999999985443
No 69
>PRK07825 short chain dehydrogenase; Provisional
Probab=84.40 E-value=1.5 Score=44.24 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=27.8
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
+.|++||++ +-+|+++|..|+++|.+|++.+
T Consensus 6 ~~ilVtGas--ggiG~~la~~l~~~G~~v~~~~ 36 (273)
T PRK07825 6 KVVAITGGA--RGIGLATARALAALGARVAIGD 36 (273)
T ss_pred CEEEEeCCC--chHHHHHHHHHHHCCCEEEEEE
Confidence 579999999 4999999999999999998843
No 70
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=84.35 E-value=1.6 Score=40.26 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=26.1
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCc-EEEeechh
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGI-KVATICKD 498 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~-~v~~~~~~ 498 (602)
|-|++||++ +-||+++|..|+++|- +|+..+++
T Consensus 1 k~~lItGa~--~giG~~~a~~l~~~g~~~v~~~~r~ 34 (167)
T PF00106_consen 1 KTVLITGAS--SGIGRALARALARRGARVVILTSRS 34 (167)
T ss_dssp EEEEEETTT--SHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred CEEEEECCC--CHHHHHHHHHHHhcCceEEEEeeec
Confidence 468999999 5999999999999955 55554443
No 71
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=84.29 E-value=1.5 Score=45.17 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=24.8
Q ss_pred EEEeccccchhhHHHHHHHhhcCC--cEEEee
Q 007475 466 VLLRGTVTANKVANAVASSLCQMG--IKVATI 495 (602)
Q Consensus 466 v~l~g~~~~~k~~~aia~~lc~~~--~~v~~~ 495 (602)
|++||+|+ -+|++++..|.++| .+|..+
T Consensus 2 vlvtGatG--~lG~~l~~~L~~~g~~~~V~~l 31 (367)
T TIGR01746 2 VLLTGATG--FLGAYLLEELLRRSTQAKVICL 31 (367)
T ss_pred EEEeccch--HHHHHHHHHHHhCCCCCEEEEE
Confidence 79999996 99999999999998 667763
No 72
>CHL00194 ycf39 Ycf39; Provisional
Probab=84.25 E-value=1.1 Score=46.67 Aligned_cols=31 Identities=13% Similarity=0.305 Sum_probs=27.9
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
.|++||+|+ .+|++++.+|.++|.+|..+++
T Consensus 2 kIlVtGatG--~iG~~lv~~Ll~~g~~V~~l~R 32 (317)
T CHL00194 2 SLLVIGATG--TLGRQIVRQALDEGYQVRCLVR 32 (317)
T ss_pred EEEEECCCc--HHHHHHHHHHHHCCCeEEEEEc
Confidence 589999997 9999999999999999987544
No 73
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=84.20 E-value=1.6 Score=43.63 Aligned_cols=39 Identities=13% Similarity=0.254 Sum_probs=31.3
Q ss_pred hhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 456 VNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 456 l~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
+++..-.-|.+++||++ +-+|+++|..|+++|.+|++.+
T Consensus 3 ~~~~~l~~k~~lItG~~--~gIG~a~a~~l~~~G~~vv~~~ 41 (253)
T PRK08993 3 LDAFSLEGKVAVVTGCD--TGLGQGMALGLAEAGCDIVGIN 41 (253)
T ss_pred ccccCCCCCEEEEECCC--chHHHHHHHHHHHCCCEEEEec
Confidence 34443334689999999 4999999999999999998743
No 74
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=84.15 E-value=1.5 Score=43.89 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=29.0
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
-|.|++||+++ -+|+++|..|.++|.+|++.++
T Consensus 5 ~k~vlItGas~--gIG~~ia~~l~~~G~~V~~~~r 37 (262)
T TIGR03325 5 GEVVLVTGGAS--GLGRAIVDRFVAEGARVAVLDK 37 (262)
T ss_pred CcEEEEECCCC--hHHHHHHHHHHHCCCEEEEEeC
Confidence 36899999994 8999999999999999998543
No 75
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.09 E-value=1.4 Score=43.41 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=26.8
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+.|++||++ +-||+++|..|+++|.+|++
T Consensus 7 ~~vlitGas--g~iG~~l~~~l~~~g~~v~~ 35 (252)
T PRK06077 7 KVVVVTGSG--RGIGRAIAVRLAKEGSLVVV 35 (252)
T ss_pred cEEEEeCCC--ChHHHHHHHHHHHCCCEEEE
Confidence 579999999 59999999999999999876
No 76
>PRK05884 short chain dehydrogenase; Provisional
Probab=84.04 E-value=1.5 Score=43.37 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=27.4
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
+|++||+++ -+|+++|..|+++|.+|.+.++
T Consensus 2 ~vlItGas~--giG~~ia~~l~~~g~~v~~~~r 32 (223)
T PRK05884 2 EVLVTGGDT--DLGRTIAEGFRNDGHKVTLVGA 32 (223)
T ss_pred eEEEEeCCc--hHHHHHHHHHHHCCCEEEEEeC
Confidence 589999994 8999999999999999998443
No 77
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=84.02 E-value=1.4 Score=43.44 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=26.7
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
|-|++||++ +-+|+++|..|+++|.+|++
T Consensus 3 k~ilItGas--~giG~~la~~l~~~g~~v~~ 31 (248)
T PRK06947 3 KVVLITGAS--RGIGRATAVLAAARGWSVGI 31 (248)
T ss_pred cEEEEeCCC--CcHHHHHHHHHHHCCCEEEE
Confidence 568999999 59999999999999999976
No 78
>PRK06483 dihydromonapterin reductase; Provisional
Probab=83.85 E-value=1.4 Score=43.26 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=29.3
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
.|.|++||++ +-+|+++|..|+++|.+|++.+++
T Consensus 2 ~k~vlItGas--~gIG~~ia~~l~~~G~~V~~~~r~ 35 (236)
T PRK06483 2 PAPILITGAG--QRIGLALAWHLLAQGQPVIVSYRT 35 (236)
T ss_pred CceEEEECCC--ChHHHHHHHHHHHCCCeEEEEeCC
Confidence 3578999999 499999999999999999985443
No 79
>PRK06180 short chain dehydrogenase; Provisional
Probab=83.66 E-value=1.6 Score=44.23 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=28.9
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
-+.|++||+++ .+|+++|..|.++|.+|.+.++
T Consensus 4 ~~~vlVtGasg--giG~~la~~l~~~G~~V~~~~r 36 (277)
T PRK06180 4 MKTWLITGVSS--GFGRALAQAALAAGHRVVGTVR 36 (277)
T ss_pred CCEEEEecCCC--hHHHHHHHHHHhCcCEEEEEeC
Confidence 35699999994 9999999999999999999443
No 80
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.63 E-value=1.4 Score=44.34 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=27.5
Q ss_pred ceEEEeccc-cchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTV-TANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~-~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
|-|++||+. + +=+|+|+|..|+++|.+|++..
T Consensus 8 k~~lItGa~~s-~GIG~a~a~~la~~G~~v~l~~ 40 (256)
T PRK07889 8 KRILVTGVITD-SSIAFHVARVAQEQGAEVVLTG 40 (256)
T ss_pred CEEEEeCCCCc-chHHHHHHHHHHHCCCEEEEec
Confidence 568999993 2 5899999999999999999854
No 81
>PRK07023 short chain dehydrogenase; Provisional
Probab=83.49 E-value=1.2 Score=43.99 Aligned_cols=32 Identities=25% Similarity=0.403 Sum_probs=28.1
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
+.|++||+++ -+|+++|..|+++|.+|++.++
T Consensus 2 ~~vlItGasg--giG~~ia~~l~~~G~~v~~~~r 33 (243)
T PRK07023 2 VRAIVTGHSR--GLGAALAEQLLQPGIAVLGVAR 33 (243)
T ss_pred ceEEEecCCc--chHHHHHHHHHhCCCEEEEEec
Confidence 3589999994 9999999999999999988544
No 82
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.47 E-value=1.7 Score=42.55 Aligned_cols=33 Identities=12% Similarity=0.327 Sum_probs=28.9
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
+.|++||+++ -+|+++|..|.++|.+|+++++.
T Consensus 6 ~~vlItGasg--~iG~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 6 KVAIVTGASS--GIGEGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred cEEEEECCCC--hHHHHHHHHHHHCCCEEEEEeCC
Confidence 4689999995 99999999999999999985543
No 83
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=83.26 E-value=1.6 Score=42.57 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=28.7
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
|-|++||++ +-+|+++|..|+++|.+|++..++
T Consensus 3 k~vlItG~s--~~iG~~la~~l~~~g~~vi~~~r~ 35 (245)
T PRK12824 3 KIALVTGAK--RGIGSAIARELLNDGYRVIATYFS 35 (245)
T ss_pred CEEEEeCCC--chHHHHHHHHHHHcCCEEEEEeCC
Confidence 468999999 599999999999999999995443
No 84
>PRK07024 short chain dehydrogenase; Provisional
Probab=83.22 E-value=1.9 Score=43.13 Aligned_cols=32 Identities=16% Similarity=0.402 Sum_probs=28.3
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
+.|++||++ +=+|+++|..|+++|.+|++..+
T Consensus 3 ~~vlItGas--~gIG~~la~~l~~~G~~v~~~~r 34 (257)
T PRK07024 3 LKVFITGAS--SGIGQALAREYARQGATLGLVAR 34 (257)
T ss_pred CEEEEEcCC--cHHHHHHHHHHHHCCCEEEEEeC
Confidence 568999999 49999999999999999998443
No 85
>PRK08618 ornithine cyclodeaminase; Validated
Probab=83.03 E-value=5.2 Score=42.64 Aligned_cols=141 Identities=16% Similarity=0.142 Sum_probs=81.3
Q ss_pred hcCCeEEeecccccccccc-ccccchhccCCCCccEEEeeCCccch-------hhhhhcC-CccCceEEEeccccchhhH
Q 007475 408 AKGVKVISLGLLNQGEELN-RNGEIYLERQPNKLKIKVVDGSSLAA-------AVVVNSL-PKTTAHVLLRGTVTANKVA 478 (602)
Q Consensus 408 ~~g~kv~sl~~lnk~~~ln-~~g~l~~~~~p~~l~vrvv~g~tl~a-------a~vl~~i-p~~~~~v~l~g~~~~~k~~ 478 (602)
-.|+|+++.--=|..+.|- -.|.+.+.--....-+=++||+.||+ |+...-+ +++.+.|.+.|+. ..|
T Consensus 63 ~~g~K~~~~~p~n~~~glp~~~g~i~l~d~~tG~p~a~~d~~~lT~~RTaa~sala~~~la~~~~~~v~iiGaG---~~a 139 (325)
T PRK08618 63 ALGLKIVSVVPENKKKGKPTIPGTVILSDFETGEVLAILDGTYLTQIRTGALSGVATKYLAREDAKTLCLIGTG---GQA 139 (325)
T ss_pred eEEEEEEeecCCCcccCCCcceEEEEEEeCCCCceEEEEccchhhhhhHHHHHHHHHHHhcCCCCcEEEEECCc---HHH
Confidence 4699999876555443332 33555544443357778899999974 3444666 6799999999999 889
Q ss_pred HHHHHHhh-cCCcEEEe-e--chhHHHHHHhcCchhhhccceecccccc--ccceEEEEcCCCC-H-HHhhcCCCCCeee
Q 007475 479 NAVASSLC-QMGIKVAT-I--CKDDYEKLKLRIPVEAQHNLVLSTSYAA--HKTKIWLVGDDLT-G-KEQARAPKGTIFI 550 (602)
Q Consensus 479 ~aia~~lc-~~~~~v~~-~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~k~w~vg~~~~-~-~eq~~a~~gt~f~ 550 (602)
++++.++| .+|++-+. . +.++-+++.++...+..-...-..++++ ..+-+-+..=.-+ + -+ .|..+|+|..
T Consensus 140 ~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~p~i~-~~l~~G~hV~ 218 (325)
T PRK08618 140 KGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKTPVFS-EKLKKGVHIN 218 (325)
T ss_pred HHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCCcchH-HhcCCCcEEE
Confidence 99999887 46665444 3 3344444443322111111111223332 3333433322211 1 13 7888999986
Q ss_pred ec
Q 007475 551 PY 552 (602)
Q Consensus 551 ~~ 552 (602)
..
T Consensus 219 ~i 220 (325)
T PRK08618 219 AV 220 (325)
T ss_pred ec
Confidence 55
No 86
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=82.91 E-value=1.6 Score=43.84 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=28.3
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
.+.|++||+++ .+|++++..|.++|.+|....
T Consensus 17 ~~~ilItGasG--~iG~~l~~~L~~~g~~V~~~~ 48 (251)
T PLN00141 17 TKTVFVAGATG--RTGKRIVEQLLAKGFAVKAGV 48 (251)
T ss_pred CCeEEEECCCc--HHHHHHHHHHHhCCCEEEEEe
Confidence 46899999996 999999999999999997633
No 87
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=82.88 E-value=1.4 Score=43.83 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=29.2
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
|.|++||+++ =+|+++|..|+++|.+|++.+++
T Consensus 9 k~vlVtGas~--gIG~~la~~l~~~G~~v~~~~r~ 41 (260)
T PRK12823 9 KVVVVTGAAQ--GIGRGVALRAAAEGARVVLVDRS 41 (260)
T ss_pred CEEEEeCCCc--hHHHHHHHHHHHCCCEEEEEeCc
Confidence 6799999994 89999999999999999986553
No 88
>PLN00198 anthocyanidin reductase; Provisional
Probab=82.84 E-value=1.5 Score=45.92 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=29.3
Q ss_pred CccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 460 PKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 460 p~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
|-.-+.|++||+++ -+|+++|.+|.++|.+|..
T Consensus 6 ~~~~~~vlItG~~G--fIG~~l~~~L~~~g~~V~~ 38 (338)
T PLN00198 6 PTGKKTACVIGGTG--FLASLLIKLLLQKGYAVNT 38 (338)
T ss_pred CCCCCeEEEECCch--HHHHHHHHHHHHCCCEEEE
Confidence 55667899999996 9999999999999999865
No 89
>PRK08643 acetoin reductase; Validated
Probab=82.68 E-value=1.9 Score=42.82 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=28.0
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|-+++||+++ =+|++||.+|+++|.+|.++++
T Consensus 3 k~~lItGas~--giG~~la~~l~~~G~~v~~~~r 34 (256)
T PRK08643 3 KVALVTGAGQ--GIGFAIAKRLVEDGFKVAIVDY 34 (256)
T ss_pred CEEEEECCCC--hHHHHHHHHHHHCCCEEEEEeC
Confidence 5689999994 8999999999999999988543
No 90
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=82.60 E-value=1.9 Score=42.78 Aligned_cols=34 Identities=15% Similarity=0.294 Sum_probs=29.4
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
.-|-|++||++ +-+|+++|..|+++|.+|++.++
T Consensus 8 ~~k~~lItGas--~giG~~ia~~L~~~G~~vvl~~r 41 (254)
T PRK08085 8 AGKNILITGSA--QGIGFLLATGLAEYGAEIIINDI 41 (254)
T ss_pred CCCEEEEECCC--ChHHHHHHHHHHHcCCEEEEEcC
Confidence 34679999999 49999999999999999999443
No 91
>PRK12939 short chain dehydrogenase; Provisional
Probab=82.54 E-value=2 Score=42.14 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=28.9
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
-+.|++||++ +-+|+++|..|+++|.+|.++++
T Consensus 7 ~~~vlItGa~--g~iG~~la~~l~~~G~~v~~~~r 39 (250)
T PRK12939 7 GKRALVTGAA--RGLGAAFAEALAEAGATVAFNDG 39 (250)
T ss_pred CCEEEEeCCC--ChHHHHHHHHHHHcCCEEEEEeC
Confidence 3679999999 49999999999999999988543
No 92
>PRK08017 oxidoreductase; Provisional
Probab=82.54 E-value=2 Score=42.38 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=27.7
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
|.|++||+++ -+|+++|..|+++|.+|++.+
T Consensus 3 k~vlVtGasg--~IG~~la~~l~~~g~~v~~~~ 33 (256)
T PRK08017 3 KSVLITGCSS--GIGLEAALELKRRGYRVLAAC 33 (256)
T ss_pred CEEEEECCCC--hHHHHHHHHHHHCCCEEEEEe
Confidence 5699999994 999999999999999998843
No 93
>PRK07774 short chain dehydrogenase; Provisional
Probab=82.49 E-value=1.6 Score=43.01 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=29.2
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
+.|++||+++ -+|+++|.+|.++|.+|++++++
T Consensus 7 k~vlItGasg--~iG~~la~~l~~~g~~vi~~~r~ 39 (250)
T PRK07774 7 KVAIVTGAAG--GIGQAYAEALAREGASVVVADIN 39 (250)
T ss_pred CEEEEECCCc--hHHHHHHHHHHHCCCEEEEEeCC
Confidence 6799999994 99999999999999999996543
No 94
>PRK06500 short chain dehydrogenase; Provisional
Probab=82.44 E-value=2 Score=42.15 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=28.4
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|.|++||+++ -+|+++|..|.++|.+|+++++
T Consensus 7 k~vlItGasg--~iG~~la~~l~~~g~~v~~~~r 38 (249)
T PRK06500 7 KTALITGGTS--GIGLETARQFLAEGARVAITGR 38 (249)
T ss_pred CEEEEeCCCc--hHHHHHHHHHHHCCCEEEEecC
Confidence 5799999994 9999999999999999988543
No 95
>PRK06101 short chain dehydrogenase; Provisional
Probab=82.41 E-value=2 Score=42.52 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=28.2
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
+.|++||+++ =+|+++|..|+++|.+|++.++
T Consensus 2 ~~vlItGas~--giG~~la~~L~~~G~~V~~~~r 33 (240)
T PRK06101 2 TAVLITGATS--GIGKQLALDYAKQGWQVIACGR 33 (240)
T ss_pred cEEEEEcCCc--HHHHHHHHHHHhCCCEEEEEEC
Confidence 4589999994 9999999999999999998544
No 96
>PRK08339 short chain dehydrogenase; Provisional
Probab=82.32 E-value=1.9 Score=43.64 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=28.3
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|-+++||++ +=+|+|||..|.++|.+|++.++
T Consensus 9 k~~lItGas--~gIG~aia~~l~~~G~~V~~~~r 40 (263)
T PRK08339 9 KLAFTTASS--KGIGFGVARVLARAGADVILLSR 40 (263)
T ss_pred CEEEEeCCC--CcHHHHHHHHHHHCCCEEEEEeC
Confidence 578999999 48999999999999999998543
No 97
>PRK05872 short chain dehydrogenase; Provisional
Probab=82.15 E-value=2.4 Score=43.76 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=33.4
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEeec--hhHHHHHHhcC
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATIC--KDDYEKLKLRI 507 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~--~~~~~~~~~~~ 507 (602)
-+.|++||++ +-||+++|..|.++|.+|++.+ .++-+.+.++.
T Consensus 9 gk~vlItGas--~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l 53 (296)
T PRK05872 9 GKVVVVTGAA--RGIGAELARRLHARGAKLALVDLEEAELAALAAEL 53 (296)
T ss_pred CCEEEEECCC--chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence 3679999999 4999999999999999999844 34444454443
No 98
>PRK05866 short chain dehydrogenase; Provisional
Probab=82.06 E-value=2 Score=44.51 Aligned_cols=32 Identities=22% Similarity=0.475 Sum_probs=28.6
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
+.|++||++ +-+|+++|..|+++|.+|++.++
T Consensus 41 k~vlItGas--ggIG~~la~~La~~G~~Vi~~~R 72 (293)
T PRK05866 41 KRILLTGAS--SGIGEAAAEQFARRGATVVAVAR 72 (293)
T ss_pred CEEEEeCCC--cHHHHHHHHHHHHCCCEEEEEEC
Confidence 679999999 59999999999999999998543
No 99
>PRK12828 short chain dehydrogenase; Provisional
Probab=81.94 E-value=1.6 Score=42.26 Aligned_cols=32 Identities=28% Similarity=0.327 Sum_probs=28.6
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|-|++||+++ -+|+++|..|+++|.+|+++++
T Consensus 8 k~vlItGatg--~iG~~la~~l~~~G~~v~~~~r 39 (239)
T PRK12828 8 KVVAITGGFG--GLGRATAAWLAARGARVALIGR 39 (239)
T ss_pred CEEEEECCCC--cHhHHHHHHHHHCCCeEEEEeC
Confidence 4699999995 9999999999999999988655
No 100
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=81.61 E-value=1.8 Score=46.62 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=31.3
Q ss_pred CccCceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 460 PKTTAHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 460 p~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
+..-+.|++||+++ -||+++|.+|.++|.+|..+++
T Consensus 18 ~~~~~~IlVtGgtG--fIG~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 18 PSEKLRICITGAGG--FIASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCCCEEEEECCcc--HHHHHHHHHHHhCCCEEEEEEe
Confidence 44557899999997 9999999999999999998554
No 101
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=81.53 E-value=1.8 Score=42.75 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=29.8
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeechhH
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICKDD 499 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~~ 499 (602)
|.|++||++ +=+|+++|..|+++|.+|++..++.
T Consensus 9 k~vlItGas--~~iG~~la~~l~~~G~~v~~~~~~~ 42 (252)
T PRK08220 9 KTVWVTGAA--QGIGYAVALAFVEAGAKVIGFDQAF 42 (252)
T ss_pred CEEEEeCCC--chHHHHHHHHHHHCCCEEEEEecch
Confidence 679999999 4899999999999999999965544
No 102
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=81.29 E-value=2.3 Score=42.50 Aligned_cols=41 Identities=20% Similarity=0.350 Sum_probs=32.0
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech--hHHHHHHhc
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK--DDYEKLKLR 506 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~--~~~~~~~~~ 506 (602)
|.|++||++ +=+|+++|..|.++|.+|++.++ ++-+++.++
T Consensus 7 k~vlVtGas--~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~ 49 (263)
T PRK06200 7 QVALITGGG--SGIGRALVERFLAEGARVAVLERSAEKLASLRQR 49 (263)
T ss_pred CEEEEeCCC--chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 578999999 48999999999999999988443 344444443
No 103
>PRK06194 hypothetical protein; Provisional
Probab=81.04 E-value=2.3 Score=43.05 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=28.3
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
+.|++||+++ =+|+++|..|+++|.+|++.++
T Consensus 7 k~vlVtGasg--gIG~~la~~l~~~G~~V~~~~r 38 (287)
T PRK06194 7 KVAVITGAAS--GFGLAFARIGAALGMKLVLADV 38 (287)
T ss_pred CEEEEeCCcc--HHHHHHHHHHHHCCCEEEEEeC
Confidence 5699999994 9999999999999999998543
No 104
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=80.96 E-value=2.3 Score=42.37 Aligned_cols=34 Identities=12% Similarity=0.212 Sum_probs=29.4
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
.-|.|++||++ +=+|++||..|+++|.+|++..+
T Consensus 14 ~~k~vlItGas--~gIG~~ia~~l~~~G~~v~~~~~ 47 (258)
T PRK06935 14 DGKVAIVTGGN--TGLGQGYAVALAKAGADIIITTH 47 (258)
T ss_pred CCCEEEEeCCC--chHHHHHHHHHHHCCCEEEEEeC
Confidence 34789999999 49999999999999999988433
No 105
>PLN02253 xanthoxin dehydrogenase
Probab=80.94 E-value=2.6 Score=42.56 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=28.5
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|.|++||+++ =+|+++|..|+++|.+|++.++
T Consensus 19 k~~lItGas~--gIG~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 19 KVALVTGGAT--GIGESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred CEEEEECCCc--hHHHHHHHHHHHcCCEEEEEeC
Confidence 6799999994 8999999999999999998543
No 106
>PRK05876 short chain dehydrogenase; Provisional
Probab=80.92 E-value=2.3 Score=43.48 Aligned_cols=31 Identities=13% Similarity=0.200 Sum_probs=27.8
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
|.|++||++ +=+|+++|..|+++|.+|++..
T Consensus 7 k~vlVTGas--~gIG~ala~~La~~G~~Vv~~~ 37 (275)
T PRK05876 7 RGAVITGGA--SGIGLATGTEFARRGARVVLGD 37 (275)
T ss_pred CEEEEeCCC--chHHHHHHHHHHHCCCEEEEEe
Confidence 569999999 5999999999999999999843
No 107
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=80.90 E-value=2.4 Score=42.20 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=28.0
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
+.|++||++ +-+|+++|..|+++|.+|++..
T Consensus 13 k~ilItGa~--g~IG~~la~~l~~~G~~V~~~~ 43 (259)
T PRK08213 13 KTALVTGGS--RGLGLQIAEALGEAGARVVLSA 43 (259)
T ss_pred CEEEEECCC--chHHHHHHHHHHHcCCEEEEEe
Confidence 679999999 4999999999999999999843
No 108
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.73 E-value=2 Score=41.89 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=28.5
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEee-ch
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATI-CK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~-~~ 497 (602)
+.+++||+++ -+|+++|..|+++|.+|++. ++
T Consensus 6 ~~ilI~Gasg--~iG~~la~~l~~~g~~v~~~~~r 38 (247)
T PRK05565 6 KVAIVTGASG--GIGRAIAELLAKEGAKVVIAYDI 38 (247)
T ss_pred CEEEEeCCCc--HHHHHHHHHHHHCCCEEEEEcCC
Confidence 5789999994 99999999999999999885 44
No 109
>PRK08267 short chain dehydrogenase; Provisional
Probab=80.72 E-value=2.5 Score=42.15 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=28.3
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|-|++||+++ =+|+++|..|+++|.+|.+.++
T Consensus 2 k~vlItGasg--~iG~~la~~l~~~G~~V~~~~r 33 (260)
T PRK08267 2 KSIFITGAAS--GIGRATALLFAAEGWRVGAYDI 33 (260)
T ss_pred cEEEEeCCCc--hHHHHHHHHHHHCCCeEEEEeC
Confidence 5689999994 9999999999999999998543
No 110
>PRK07985 oxidoreductase; Provisional
Probab=80.70 E-value=1.6 Score=45.07 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=27.7
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
|.|++||++ +=+|++||..|+++|.+|++.
T Consensus 50 k~vlITGas--~gIG~aia~~L~~~G~~Vi~~ 79 (294)
T PRK07985 50 RKALVTGGD--SGIGRAAAIAYAREGADVAIS 79 (294)
T ss_pred CEEEEECCC--CcHHHHHHHHHHHCCCEEEEe
Confidence 579999999 499999999999999999984
No 111
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=80.63 E-value=1.8 Score=42.78 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=29.9
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
.-+-|++||++ +-+|.++|..|+++|.+|+.++++
T Consensus 11 ~~k~vlItG~~--g~iG~~la~~l~~~G~~Vi~~~r~ 45 (247)
T PRK08945 11 KDRIILVTGAG--DGIGREAALTYARHGATVILLGRT 45 (247)
T ss_pred CCCEEEEeCCC--chHHHHHHHHHHHCCCcEEEEeCC
Confidence 44579999999 499999999999999999885543
No 112
>PRK08263 short chain dehydrogenase; Provisional
Probab=80.53 E-value=1.9 Score=43.54 Aligned_cols=32 Identities=13% Similarity=0.180 Sum_probs=28.3
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|.|++||++ +-+|+++|.+|.++|.+|...++
T Consensus 4 k~vlItGas--g~iG~~~a~~l~~~g~~V~~~~r 35 (275)
T PRK08263 4 KVWFITGAS--RGFGRAWTEAALERGDRVVATAR 35 (275)
T ss_pred CEEEEeCCC--ChHHHHHHHHHHHCCCEEEEEEC
Confidence 579999999 59999999999999999988443
No 113
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.52 E-value=2.7 Score=41.08 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=28.5
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
+.|++||++ +.+|.++|..|+++|.+|+..++
T Consensus 6 ~~vlItGa~--g~iG~~~a~~l~~~G~~V~~~~r 37 (238)
T PRK05786 6 KKVAIIGVS--EGLGYAVAYFALKEGAQVCINSR 37 (238)
T ss_pred cEEEEECCC--chHHHHHHHHHHHCCCEEEEEeC
Confidence 579999999 49999999999999999998444
No 114
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=80.52 E-value=2.3 Score=42.54 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=27.9
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
-|.|++||+++ -+|++||..|+++|.+|++.
T Consensus 7 ~k~~lItGa~~--gIG~~ia~~l~~~G~~vvi~ 37 (261)
T PRK08936 7 GKVVVITGGST--GLGRAMAVRFGKEKAKVVIN 37 (261)
T ss_pred CCEEEEeCCCC--hHHHHHHHHHHHCCCEEEEE
Confidence 36789999994 99999999999999999883
No 115
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.46 E-value=2.3 Score=42.00 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=27.6
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
|.|++||+++ =+|+++|..|+++|.+|+.+.
T Consensus 3 k~vlItG~sg--~iG~~la~~L~~~g~~vi~~~ 33 (256)
T PRK12745 3 PVALVTGGRR--GIGLGIARALAAAGFDLAIND 33 (256)
T ss_pred cEEEEeCCCc--hHHHHHHHHHHHCCCEEEEEe
Confidence 4689999995 899999999999999998844
No 116
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=80.46 E-value=2.7 Score=43.48 Aligned_cols=85 Identities=21% Similarity=0.232 Sum_probs=59.0
Q ss_pred ccccccccchhccCCCCccEEEeeCCccc----hhhhhhcCCccCceEEEeccccchh--hHHHHHHHhhcCCcEEEe-e
Q 007475 423 EELNRNGEIYLERQPNKLKIKVVDGSSLA----AAVVVNSLPKTTAHVLLRGTVTANK--VANAVASSLCQMGIKVAT-I 495 (602)
Q Consensus 423 ~~ln~~g~l~~~~~p~~l~vrvv~g~tl~----aa~vl~~ip~~~~~v~l~g~~~~~k--~~~aia~~lc~~~~~v~~-~ 495 (602)
+.+|..+-+-.+|.-+.-.+...+|.... ++.....++ .-+.++|.|..|.-| |+-|||..||++|++|+. .
T Consensus 62 ~~~~~~a~~p~~k~~~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 62 ERRLRSASFPAKKTFEEFDFEFQPGIDKKALEDLASLVEFFE-RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred HHHHHHhcCCccCCcccccccCCcchhHHHHHHHHHHHHHhc-cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 44455555555555444566666665554 344445777 777889999775335 999999999999999999 6
Q ss_pred chhHHHHHHhcCc
Q 007475 496 CKDDYEKLKLRIP 508 (602)
Q Consensus 496 ~~~~~~~~~~~~~ 508 (602)
..|-...||....
T Consensus 141 ~~el~~~Lk~~~~ 153 (254)
T COG1484 141 APDLLSKLKAAFD 153 (254)
T ss_pred HHHHHHHHHHHHh
Confidence 6777788877643
No 117
>PRK08862 short chain dehydrogenase; Provisional
Probab=80.45 E-value=2.5 Score=42.16 Aligned_cols=32 Identities=6% Similarity=0.235 Sum_probs=28.5
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|.+++||++ +=+|+++|..|+++|.+|++.++
T Consensus 6 k~~lVtGas--~GIG~aia~~la~~G~~V~~~~r 37 (227)
T PRK08862 6 SIILITSAG--SVLGRTISCHFARLGATLILCDQ 37 (227)
T ss_pred eEEEEECCc--cHHHHHHHHHHHHCCCEEEEEcC
Confidence 678999999 48999999999999999999543
No 118
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=80.30 E-value=2.7 Score=41.76 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=27.4
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
.|++||+++ =+|+++|..|+++|.+|+..++
T Consensus 2 ~vlItGasg--~iG~~la~~l~~~G~~V~~~~r 32 (248)
T PRK10538 2 IVLVTGATA--GFGECITRRFIQQGHKVIATGR 32 (248)
T ss_pred EEEEECCCc--hHHHHHHHHHHHCCCEEEEEEC
Confidence 489999995 8999999999999999998443
No 119
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=80.24 E-value=3.1 Score=40.71 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=25.8
Q ss_pred EEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 466 VLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 466 v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
|++||++ +=+|+++|..|+++|.+|++.+
T Consensus 1 vlItGas--~giG~~~a~~l~~~G~~v~~~~ 29 (239)
T TIGR01831 1 VLVTGAS--RGIGRAIANRLAADGFEICVHY 29 (239)
T ss_pred CEEeCCC--chHHHHHHHHHHHCCCEEEEEe
Confidence 5899999 4899999999999999998843
No 120
>PRK08251 short chain dehydrogenase; Provisional
Probab=80.10 E-value=2.7 Score=41.37 Aligned_cols=31 Identities=16% Similarity=0.329 Sum_probs=27.5
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
+.|++||++ +-+|+++|..|+++|.+|++.+
T Consensus 3 k~vlItGas--~giG~~la~~l~~~g~~v~~~~ 33 (248)
T PRK08251 3 QKILITGAS--SGLGAGMAREFAAKGRDLALCA 33 (248)
T ss_pred CEEEEECCC--CHHHHHHHHHHHHcCCEEEEEe
Confidence 458999999 4999999999999999998843
No 121
>PRK06953 short chain dehydrogenase; Provisional
Probab=79.94 E-value=2.6 Score=41.15 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=28.1
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
+.|++||++ +-||+++|..|+++|.+|++..+
T Consensus 2 ~~vlvtG~s--g~iG~~la~~L~~~G~~v~~~~r 33 (222)
T PRK06953 2 KTVLIVGAS--RGIGREFVRQYRADGWRVIATAR 33 (222)
T ss_pred ceEEEEcCC--CchhHHHHHHHHhCCCEEEEEEC
Confidence 468999999 49999999999999999988443
No 122
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=79.87 E-value=2.4 Score=42.47 Aligned_cols=30 Identities=17% Similarity=0.396 Sum_probs=27.4
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
|-|++||++ +=+|++||..|+++|.+|++.
T Consensus 9 k~vlItGas--~gIG~~ia~~l~~~G~~v~~~ 38 (260)
T PRK08416 9 KTLVISGGT--RGIGKAIVYEFAQSGVNIAFT 38 (260)
T ss_pred CEEEEeCCC--chHHHHHHHHHHHCCCEEEEE
Confidence 578999999 489999999999999999884
No 123
>PLN02583 cinnamoyl-CoA reductase
Probab=79.86 E-value=2.5 Score=43.68 Aligned_cols=32 Identities=16% Similarity=0.084 Sum_probs=28.5
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
-+.|++||+++ -+|++|+..|.++|.+|..+.
T Consensus 6 ~k~vlVTGatG--~IG~~lv~~Ll~~G~~V~~~~ 37 (297)
T PLN02583 6 SKSVCVMDASG--YVGFWLVKRLLSRGYTVHAAV 37 (297)
T ss_pred CCEEEEECCCC--HHHHHHHHHHHhCCCEEEEEE
Confidence 46799999995 999999999999999998743
No 124
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.65 E-value=2.4 Score=42.52 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=28.1
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|-|+.||+++.+=+|+|+|..|+++|.+|++.++
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 6789999982015999999999999999999544
No 125
>PRK07074 short chain dehydrogenase; Provisional
Probab=79.64 E-value=2.1 Score=42.51 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=28.2
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
+-+++||+++ -+|+++|..|.++|.+|.++++
T Consensus 3 k~ilItGat~--~iG~~la~~L~~~g~~v~~~~r 34 (257)
T PRK07074 3 RTALVTGAAG--GIGQALARRFLAAGDRVLALDI 34 (257)
T ss_pred CEEEEECCcc--hHHHHHHHHHHHCCCEEEEEeC
Confidence 4589999994 9999999999999999998544
No 126
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=79.63 E-value=2.8 Score=41.63 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=28.2
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|.|++||++ +-+|+++|..|.++|.+|++.++
T Consensus 3 k~ilItG~~--~~IG~~la~~l~~~g~~vi~~~r 34 (259)
T PRK12384 3 QVAVVIGGG--QTLGAFLCHGLAEEGYRVAVADI 34 (259)
T ss_pred CEEEEECCC--cHHHHHHHHHHHHCCCEEEEEEC
Confidence 569999999 49999999999999999988543
No 127
>PRK08226 short chain dehydrogenase; Provisional
Probab=79.52 E-value=2.2 Score=42.51 Aligned_cols=33 Identities=12% Similarity=0.314 Sum_probs=29.1
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
+.+++||++ +=+|+++|..|+++|.+|+++++.
T Consensus 7 ~~~lItG~s--~giG~~la~~l~~~G~~Vv~~~r~ 39 (263)
T PRK08226 7 KTALITGAL--QGIGEGIARVFARHGANLILLDIS 39 (263)
T ss_pred CEEEEeCCC--ChHHHHHHHHHHHCCCEEEEecCC
Confidence 678999999 489999999999999999996544
No 128
>PRK06914 short chain dehydrogenase; Provisional
Probab=79.45 E-value=2.8 Score=42.22 Aligned_cols=31 Identities=13% Similarity=0.149 Sum_probs=27.7
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
+-|++||+++ -+|+++|..|.++|.+|.+.+
T Consensus 4 k~~lItGasg--~iG~~la~~l~~~G~~V~~~~ 34 (280)
T PRK06914 4 KIAIVTGASS--GFGLLTTLELAKKGYLVIATM 34 (280)
T ss_pred CEEEEECCCc--hHHHHHHHHHHhCCCEEEEEe
Confidence 4589999994 999999999999999999843
No 129
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.35 E-value=2.1 Score=43.71 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=27.7
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
|-|++||+++.+=+|+|||..|+++|.+|++.+
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~ 40 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGAELAFTY 40 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEec
Confidence 568999998312599999999999999999944
No 130
>PRK06057 short chain dehydrogenase; Provisional
Probab=79.29 E-value=2.9 Score=41.59 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=27.9
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
+.|++||+++ =+|+++|.+|.++|.+|.+++
T Consensus 8 ~~vlItGasg--gIG~~~a~~l~~~G~~v~~~~ 38 (255)
T PRK06057 8 RVAVITGGGS--GIGLATARRLAAEGATVVVGD 38 (255)
T ss_pred CEEEEECCCc--hHHHHHHHHHHHcCCEEEEEe
Confidence 5799999994 899999999999999998843
No 131
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=79.17 E-value=2.1 Score=44.35 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=27.1
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+.|++||+++ -+|++++..|.++|.+|..
T Consensus 6 ~~vlVTGatG--~iG~~l~~~L~~~g~~V~~ 34 (322)
T PLN02986 6 KLVCVTGASG--YIASWIVKLLLLRGYTVKA 34 (322)
T ss_pred CEEEEECCCc--HHHHHHHHHHHHCCCEEEE
Confidence 6899999996 9999999999999999985
No 132
>PRK07677 short chain dehydrogenase; Provisional
Probab=79.11 E-value=2.9 Score=41.52 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=28.1
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|.+++||+++ =+|+++|..|+++|.+|++.++
T Consensus 2 k~~lItG~s~--giG~~ia~~l~~~G~~Vi~~~r 33 (252)
T PRK07677 2 KVVIITGGSS--GMGKAMAKRFAEEGANVVITGR 33 (252)
T ss_pred CEEEEeCCCC--hHHHHHHHHHHHCCCEEEEEeC
Confidence 5689999994 8999999999999999988543
No 133
>PRK06181 short chain dehydrogenase; Provisional
Probab=79.05 E-value=2.4 Score=42.24 Aligned_cols=33 Identities=18% Similarity=0.390 Sum_probs=28.5
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
+-|++||+++ -+|+++|..|+++|.+|+.++++
T Consensus 2 ~~vlVtGasg--~iG~~la~~l~~~g~~Vi~~~r~ 34 (263)
T PRK06181 2 KVVIITGASE--GIGRALAVRLARAGAQLVLAARN 34 (263)
T ss_pred CEEEEecCCc--HHHHHHHHHHHHCCCEEEEEeCC
Confidence 3589999995 99999999999999999995543
No 134
>PRK06114 short chain dehydrogenase; Provisional
Probab=78.89 E-value=2.6 Score=42.05 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=27.9
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
|-+++||+++ =+|+++|..|+++|.+|++.+
T Consensus 9 k~~lVtG~s~--gIG~~ia~~l~~~G~~v~~~~ 39 (254)
T PRK06114 9 QVAFVTGAGS--GIGQRIAIGLAQAGADVALFD 39 (254)
T ss_pred CEEEEECCCc--hHHHHHHHHHHHCCCEEEEEe
Confidence 6789999994 899999999999999999844
No 135
>PRK07069 short chain dehydrogenase; Validated
Probab=78.72 E-value=2.4 Score=41.67 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=26.8
Q ss_pred EEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 466 VLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 466 v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|++||+++ -+|+++|..|+++|.+|.+.++
T Consensus 2 ilVtG~~~--~iG~~~a~~l~~~G~~v~~~~r 31 (251)
T PRK07069 2 AFITGAAG--GLGRAIARRMAEQGAKVFLTDI 31 (251)
T ss_pred EEEECCCC--hHHHHHHHHHHHCCCEEEEEeC
Confidence 78999994 8999999999999999988543
No 136
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=78.67 E-value=1.9 Score=45.13 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=27.7
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcE-EEeech
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIK-VATICK 497 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~-v~~~~~ 497 (602)
.-+.|+++|+. -.|||||.+|.+.|++ |.+.++
T Consensus 125 ~~k~vlI~GAG---GagrAia~~La~~G~~~V~I~~R 158 (289)
T PRK12548 125 KGKKLTVIGAG---GAATAIQVQCALDGAKEITIFNI 158 (289)
T ss_pred CCCEEEEECCc---HHHHHHHHHHHHCCCCEEEEEeC
Confidence 34789999996 7899999999999997 888554
No 137
>PRK12937 short chain dehydrogenase; Provisional
Probab=78.48 E-value=2.9 Score=40.87 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=27.2
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
+.|++||++ +=+|+++|..|+++|.+|++.
T Consensus 6 ~~vlItG~~--~~iG~~la~~l~~~g~~v~~~ 35 (245)
T PRK12937 6 KVAIVTGAS--RGIGAAIARRLAADGFAVAVN 35 (245)
T ss_pred CEEEEeCCC--chHHHHHHHHHHHCCCEEEEe
Confidence 579999999 499999999999999999873
No 138
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=78.46 E-value=3.6 Score=41.27 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=32.1
Q ss_pred hcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 457 NSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 457 ~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
|..+-..|-|++||+++ =+|++||..|.++|.+|++..
T Consensus 4 ~~~~~~~k~~lItGa~~--~iG~~ia~~l~~~G~~vv~~~ 41 (265)
T PRK07097 4 NLFSLKGKIALITGASY--GIGFAIAKAYAKAGATIVFND 41 (265)
T ss_pred cccCCCCCEEEEeCCCc--hHHHHHHHHHHHCCCeEEEEe
Confidence 44555667899999994 899999999999999999843
No 139
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=78.45 E-value=2.1 Score=43.33 Aligned_cols=30 Identities=17% Similarity=0.290 Sum_probs=27.3
Q ss_pred EEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 466 VLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 466 v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|++||+++ .||+++|..|.++|.+|..+++
T Consensus 3 ILVtG~tG--fiG~~l~~~L~~~g~~V~~~~r 32 (314)
T COG0451 3 ILVTGGAG--FIGSHLVERLLAAGHDVRGLDR 32 (314)
T ss_pred EEEEcCcc--cHHHHHHHHHHhCCCeEEEEeC
Confidence 89999986 9999999999999999999443
No 140
>PRK06139 short chain dehydrogenase; Provisional
Probab=78.33 E-value=2.9 Score=44.43 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=28.6
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
+-|++||++ +=+|+++|..|+++|.+|++.++
T Consensus 8 k~vlITGAs--~GIG~aia~~la~~G~~Vvl~~R 39 (330)
T PRK06139 8 AVVVITGAS--SGIGQATAEAFARRGARLVLAAR 39 (330)
T ss_pred CEEEEcCCC--CHHHHHHHHHHHHCCCEEEEEEC
Confidence 679999999 59999999999999999999543
No 141
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=78.29 E-value=2.3 Score=42.50 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=27.9
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
|-|++||+++ =+|+++|..|.++|.+|++.+
T Consensus 10 k~vlItG~s~--gIG~~la~~l~~~G~~v~~~~ 40 (266)
T PRK06171 10 KIIIVTGGSS--GIGLAIVKELLANGANVVNAD 40 (266)
T ss_pred CEEEEeCCCC--hHHHHHHHHHHHCCCEEEEEe
Confidence 5689999994 999999999999999999843
No 142
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=78.29 E-value=3.2 Score=41.24 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=27.7
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
+.|++||+++ =+|++||..|.++|.+|++..
T Consensus 7 ~~vlItGas~--~iG~~ia~~l~~~G~~v~~~~ 37 (257)
T PRK07067 7 KVALLTGAAS--GIGEAVAERYLAEGARVVIAD 37 (257)
T ss_pred CEEEEeCCCc--hHHHHHHHHHHHcCCEEEEEc
Confidence 5699999994 899999999999999999843
No 143
>PRK09072 short chain dehydrogenase; Provisional
Probab=78.17 E-value=3.3 Score=41.42 Aligned_cols=32 Identities=25% Similarity=0.447 Sum_probs=28.3
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
+.|++||+++ =+|+++|..|+++|.+|++.++
T Consensus 6 ~~vlItG~s~--~iG~~ia~~l~~~G~~V~~~~r 37 (263)
T PRK09072 6 KRVLLTGASG--GIGQALAEALAAAGARLLLVGR 37 (263)
T ss_pred CEEEEECCCc--hHHHHHHHHHHHCCCEEEEEEC
Confidence 4699999994 8999999999999999998554
No 144
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=78.16 E-value=2.7 Score=41.51 Aligned_cols=29 Identities=21% Similarity=0.418 Sum_probs=26.2
Q ss_pred EEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 466 VLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 466 v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
|+++|+|+ ++|+.|+.+|-++|.+|..+.
T Consensus 1 I~V~GatG--~~G~~v~~~L~~~~~~V~~l~ 29 (233)
T PF05368_consen 1 ILVTGATG--NQGRSVVRALLSAGFSVRALV 29 (233)
T ss_dssp EEEETTTS--HHHHHHHHHHHHTTGCEEEEE
T ss_pred CEEECCcc--HHHHHHHHHHHhCCCCcEEEE
Confidence 68999997 999999999999999998833
No 145
>PRK08628 short chain dehydrogenase; Provisional
Probab=78.07 E-value=2.7 Score=41.70 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=28.6
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
-+-|++||+++ -+|+++|..|+++|.+|+..++
T Consensus 7 ~~~ilItGasg--giG~~la~~l~~~G~~v~~~~r 39 (258)
T PRK08628 7 DKVVIVTGGAS--GIGAAISLRLAEEGAIPVIFGR 39 (258)
T ss_pred CCEEEEeCCCC--hHHHHHHHHHHHcCCcEEEEcC
Confidence 35789999994 8999999999999999988443
No 146
>PRK07109 short chain dehydrogenase; Provisional
Probab=77.97 E-value=3.2 Score=44.01 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=28.8
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
-+.|++||++ +=+|+++|..|+++|.+|++.++
T Consensus 8 ~k~vlITGas--~gIG~~la~~la~~G~~Vvl~~R 40 (334)
T PRK07109 8 RQVVVITGAS--AGVGRATARAFARRGAKVVLLAR 40 (334)
T ss_pred CCEEEEECCC--CHHHHHHHHHHHHCCCEEEEEEC
Confidence 3679999999 59999999999999999988443
No 147
>PRK08703 short chain dehydrogenase; Provisional
Probab=77.88 E-value=3.3 Score=40.68 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=28.3
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
+.|++||+++ =+|+++|..|+++|.+|++.++
T Consensus 7 k~vlItG~sg--giG~~la~~l~~~g~~V~~~~r 38 (239)
T PRK08703 7 KTILVTGASQ--GLGEQVAKAYAAAGATVILVAR 38 (239)
T ss_pred CEEEEECCCC--cHHHHHHHHHHHcCCEEEEEeC
Confidence 5799999994 8999999999999999998543
No 148
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.85 E-value=3 Score=42.04 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=28.1
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
-|-|++||+++++=+|+|+|..|.++|.+|++.+
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~ 43 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGAELAVTY 43 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEe
Confidence 3678999998312599999999999999998843
No 149
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=77.84 E-value=3.5 Score=40.47 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=28.2
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
+.|++||++ +-+|+++|..|.++|.+|.+..+
T Consensus 4 ~~ilItGas--~~iG~~la~~l~~~g~~v~~~~r 35 (250)
T TIGR03206 4 KTAIVTGGG--GGIGGATCRRFAEEGAKVAVFDL 35 (250)
T ss_pred CEEEEeCCC--ChHHHHHHHHHHHCCCEEEEecC
Confidence 578999999 49999999999999999988433
No 150
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=77.81 E-value=3 Score=40.70 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=27.1
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
+.|++||+++ =+|+++|..|+++|.+|.+.
T Consensus 7 ~~vlItGa~g--~iG~~la~~l~~~g~~v~~~ 36 (245)
T PRK12936 7 RKALVTGASG--GIGEEIARLLHAQGAIVGLH 36 (245)
T ss_pred CEEEEECCCC--hHHHHHHHHHHHCCCEEEEE
Confidence 5799999994 99999999999999999873
No 151
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.72 E-value=2.8 Score=41.75 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=28.9
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
|.|++||+++.+=+|+++|..|.++|.+|++.++.
T Consensus 6 k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~ 40 (256)
T PRK12748 6 KIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWS 40 (256)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCC
Confidence 67999999832249999999999999999996543
No 152
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.66 E-value=2.9 Score=42.28 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=26.9
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
|.|++||+++++=+|+|+|..|+++|.+|++.
T Consensus 7 k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~ 38 (261)
T PRK08690 7 KKILITGMISERSIAYGIAKACREQGAELAFT 38 (261)
T ss_pred cEEEEECCCCCCcHHHHHHHHHHHCCCEEEEE
Confidence 57899998432459999999999999999984
No 153
>PRK05875 short chain dehydrogenase; Provisional
Probab=77.64 E-value=3.5 Score=41.44 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=29.2
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
-+.|++||+++ =+|+++|..|+++|.+|..+++
T Consensus 7 ~k~vlItGasg--~IG~~la~~l~~~G~~V~~~~r 39 (276)
T PRK05875 7 DRTYLVTGGGS--GIGKGVAAGLVAAGAAVMIVGR 39 (276)
T ss_pred CCEEEEECCCc--HHHHHHHHHHHHCCCeEEEEeC
Confidence 37899999995 8999999999999999998554
No 154
>PLN02650 dihydroflavonol-4-reductase
Probab=77.47 E-value=2.4 Score=44.58 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=28.3
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
+-+.|++||+++ -+|++++..|.++|.+|..+
T Consensus 4 ~~k~iLVTGatG--fIGs~l~~~L~~~G~~V~~~ 35 (351)
T PLN02650 4 QKETVCVTGASG--FIGSWLVMRLLERGYTVRAT 35 (351)
T ss_pred CCCEEEEeCCcH--HHHHHHHHHHHHCCCEEEEE
Confidence 345799999996 99999999999999999863
No 155
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=77.44 E-value=3.8 Score=44.71 Aligned_cols=105 Identities=16% Similarity=0.147 Sum_probs=69.1
Q ss_pred eccchhhhHHHHHHHHHHHHHHhcCCeEEeeccccccccccccccchhccCCCCccEEEeeCCccchhh----------h
Q 007475 386 YNLPWRREAINSLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIKVVDGSSLAAAV----------V 455 (602)
Q Consensus 386 y~~~~~~~~in~~ie~ai~~a~~~g~kv~sl~~lnk~~~ln~~g~l~~~~~p~~l~vrvv~g~tl~aa~----------v 455 (602)
+.++....-+++.|.+.-++=.+.|+.|+++- ++|+.+ .|+ -..++--|+.|..+. .
T Consensus 157 ~~V~~~s~~~g~~l~~l~~~~~~~~~~vi~i~---------r~~~~~---~p~-~~~~l~~gD~l~v~g~~~~l~~~~~~ 223 (453)
T PRK09496 157 VKVYEGSPLVGKPLSDLREHFPDIDVRVVAIF---------RGGRLI---IPR-GDTVIEAGDEVYFIGAREHIRAVMSE 223 (453)
T ss_pred EEeCCCCccCCcCHHHhhhhcCCCceEEEEEE---------ECCEEE---cCC-CCcEecCCCEEEEEeCHHHHHHHHHH
Confidence 34444444555555444322135799998773 234422 366 667777787776543 2
Q ss_pred hhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEee--chhHHHHHHhc
Q 007475 456 VNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVATI--CKDDYEKLKLR 506 (602)
Q Consensus 456 l~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~--~~~~~~~~~~~ 506 (602)
+.+.+...+.|++.|.. ++|+++|..|-++|.+|+++ +.++.+.++++
T Consensus 224 ~~~~~~~~~~iiIiG~G---~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~ 273 (453)
T PRK09496 224 FGRLEKPVKRVMIVGGG---NIGYYLAKLLEKEGYSVKLIERDPERAEELAEE 273 (453)
T ss_pred hCccCCCCCEEEEECCC---HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH
Confidence 23333456889999997 99999999999999999984 66667766654
No 156
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.35 E-value=3.3 Score=41.22 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=27.4
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
|-|++||++ +=+|+++|..|+++|.+|++.
T Consensus 8 k~~lItGas--~gIG~~~a~~l~~~G~~v~~~ 37 (255)
T PRK06463 8 KVALITGGT--RGIGRAIAEAFLREGAKVAVL 37 (255)
T ss_pred CEEEEeCCC--ChHHHHHHHHHHHCCCEEEEE
Confidence 679999999 499999999999999999884
No 157
>PRK06125 short chain dehydrogenase; Provisional
Probab=77.35 E-value=3.6 Score=41.10 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=28.0
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
|-|++||+++ =+|++||..|+++|.+|++.+
T Consensus 8 k~vlItG~~~--giG~~ia~~l~~~G~~V~~~~ 38 (259)
T PRK06125 8 KRVLITGASK--GIGAAAAEAFAAEGCHLHLVA 38 (259)
T ss_pred CEEEEeCCCc--hHHHHHHHHHHHcCCEEEEEe
Confidence 6799999994 899999999999999999854
No 158
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.32 E-value=2.5 Score=41.23 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=29.0
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
|.+++||++ +=+|+++|..|+++|.+|++.+++
T Consensus 6 k~~lVtGas--~~iG~~ia~~l~~~G~~v~~~~r~ 38 (235)
T PRK06550 6 KTVLITGAA--SGIGLAQARAFLAQGAQVYGVDKQ 38 (235)
T ss_pred CEEEEcCCC--chHHHHHHHHHHHCCCEEEEEeCC
Confidence 678999999 499999999999999999885544
No 159
>PRK07060 short chain dehydrogenase; Provisional
Probab=77.20 E-value=4.4 Score=39.63 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=29.5
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
.-+.+++||+++ -+|+++|..|.++|.+|+++++
T Consensus 8 ~~~~~lItGa~g--~iG~~~a~~l~~~g~~V~~~~r 41 (245)
T PRK07060 8 SGKSVLVTGASS--GIGRACAVALAQRGARVVAAAR 41 (245)
T ss_pred CCCEEEEeCCcc--hHHHHHHHHHHHCCCEEEEEeC
Confidence 346799999994 9999999999999999998544
No 160
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=77.16 E-value=3.2 Score=45.16 Aligned_cols=41 Identities=20% Similarity=0.324 Sum_probs=33.4
Q ss_pred hhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 456 VNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 456 l~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
..+.+..-+.|++||+++ .+|++++..|.++|.+|..++++
T Consensus 53 ~~~~~~~~~kVLVtGatG--~IG~~l~~~Ll~~G~~V~~l~R~ 93 (390)
T PLN02657 53 FRSKEPKDVTVLVVGATG--YIGKFVVRELVRRGYNVVAVARE 93 (390)
T ss_pred ccccCCCCCEEEEECCCc--HHHHHHHHHHHHCCCEEEEEEec
Confidence 334555556799999996 99999999999999999985543
No 161
>PRK05650 short chain dehydrogenase; Provisional
Probab=77.12 E-value=3.5 Score=41.46 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=27.4
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
+.|++||++ +-+|+++|..|+++|.+|+...
T Consensus 1 ~~vlVtGas--ggIG~~la~~l~~~g~~V~~~~ 31 (270)
T PRK05650 1 NRVMITGAA--SGLGRAIALRWAREGWRLALAD 31 (270)
T ss_pred CEEEEecCC--ChHHHHHHHHHHHCCCEEEEEe
Confidence 358999999 4999999999999999998843
No 162
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=77.09 E-value=2.7 Score=41.31 Aligned_cols=29 Identities=17% Similarity=0.348 Sum_probs=26.7
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
|-|++||++ +-+|+++|..|+++|.+|++
T Consensus 4 k~~lVtG~s--~giG~~~a~~l~~~G~~vv~ 32 (246)
T PRK12938 4 RIAYVTGGM--GGIGTSICQRLHKDGFKVVA 32 (246)
T ss_pred CEEEEECCC--ChHHHHHHHHHHHcCCEEEE
Confidence 568999999 49999999999999999987
No 163
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=76.91 E-value=21 Score=35.74 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=15.8
Q ss_pred cccccCCchhHHHhhhCCCCCC
Q 007475 239 LKFLMYTPSYHSLHHTQFRTNY 260 (602)
Q Consensus 239 Lk~li~Tp~~H~lHH~~~~~NY 260 (602)
++++..+-.+|..||..++..+
T Consensus 167 ~~~l~~~~nyH~~HHL~P~IP~ 188 (207)
T cd03514 167 LNPLIMGQNYHLVHHLWPSIPW 188 (207)
T ss_pred HheeecCCchhHHHhCCCCCch
Confidence 3555556679999999876544
No 164
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.79 E-value=3 Score=40.92 Aligned_cols=32 Identities=25% Similarity=0.471 Sum_probs=28.4
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
+-|++||++ +-+|+++|.+|+++|.+|+..++
T Consensus 8 ~~vlVtG~s--g~iG~~l~~~L~~~G~~Vi~~~r 39 (239)
T PRK07666 8 KNALITGAG--RGIGRAVAIALAKEGVNVGLLAR 39 (239)
T ss_pred CEEEEEcCC--chHHHHHHHHHHHCCCEEEEEeC
Confidence 568999999 49999999999999999988544
No 165
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=76.69 E-value=2.9 Score=40.59 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=26.5
Q ss_pred EEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 466 VLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 466 v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|++||+++ -+|+++|..|+++|.+|.+.++
T Consensus 1 vlItG~~g--~iG~~la~~l~~~G~~v~~~~r 30 (239)
T TIGR01830 1 ALVTGASR--GIGRAIALKLAKEGAKVIITYR 30 (239)
T ss_pred CEEECCCc--HHHHHHHHHHHHCCCEEEEEeC
Confidence 57899995 8999999999999999988544
No 166
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.68 E-value=3.4 Score=40.65 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=26.8
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
|.+++||+++ =+|+++|..|+++|.+|++
T Consensus 6 k~ilItGas~--gIG~~la~~l~~~G~~vv~ 34 (253)
T PRK08642 6 QTVLVTGGSR--GLGAAIARAFAREGARVVV 34 (253)
T ss_pred CEEEEeCCCC--cHHHHHHHHHHHCCCeEEE
Confidence 5799999994 8999999999999999987
No 167
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=76.57 E-value=2.8 Score=46.42 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=28.1
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
|.|++||+++ -+|+|+|..|+++|.+|+..+
T Consensus 179 K~VLITGASg--GIG~aLA~~La~~G~~Vi~l~ 209 (406)
T PRK07424 179 KTVAVTGASG--TLGQALLKELHQQGAKVVALT 209 (406)
T ss_pred CEEEEeCCCC--HHHHHHHHHHHHCCCEEEEEe
Confidence 6799999994 999999999999999998844
No 168
>PRK07806 short chain dehydrogenase; Provisional
Probab=76.41 E-value=3.4 Score=40.67 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=27.7
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
+.|++||+++ -+|+++|..|.++|.+|.+.+
T Consensus 7 k~vlItGasg--giG~~l~~~l~~~G~~V~~~~ 37 (248)
T PRK07806 7 KTALVTGSSR--GIGADTAKILAGAGAHVVVNY 37 (248)
T ss_pred cEEEEECCCC--cHHHHHHHHHHHCCCEEEEEe
Confidence 5799999994 999999999999999998743
No 169
>PRK06128 oxidoreductase; Provisional
Probab=76.39 E-value=2.7 Score=43.40 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=27.6
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
|.|++||++ +=+|+++|..|+++|.+|++.
T Consensus 56 k~vlITGas--~gIG~~~a~~l~~~G~~V~i~ 85 (300)
T PRK06128 56 RKALITGAD--SGIGRATAIAFAREGADIALN 85 (300)
T ss_pred CEEEEecCC--CcHHHHHHHHHHHcCCEEEEE
Confidence 679999999 499999999999999999883
No 170
>PRK12746 short chain dehydrogenase; Provisional
Probab=76.27 E-value=3 Score=41.19 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=26.8
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+.|++||++ +-+|+++|.+|.++|.+|.+
T Consensus 7 ~~ilItGas--g~iG~~la~~l~~~G~~v~i 35 (254)
T PRK12746 7 KVALVTGAS--RGIGRAIAMRLANDGALVAI 35 (254)
T ss_pred CEEEEeCCC--chHHHHHHHHHHHCCCEEEE
Confidence 679999999 49999999999999999976
No 171
>PRK07035 short chain dehydrogenase; Provisional
Probab=76.09 E-value=4.2 Score=40.25 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=28.5
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|.|++||++ +=+|+++|..|.++|.+|++.++
T Consensus 9 k~vlItGas--~gIG~~l~~~l~~~G~~Vi~~~r 40 (252)
T PRK07035 9 KIALVTGAS--RGIGEAIAKLLAQQGAHVIVSSR 40 (252)
T ss_pred CEEEEECCC--cHHHHHHHHHHHHCCCEEEEEeC
Confidence 569999999 49999999999999999998543
No 172
>PRK08303 short chain dehydrogenase; Provisional
Probab=75.99 E-value=3 Score=43.72 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=28.3
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|-|++||++ +=+|+|+|..|+++|.+|++.++
T Consensus 9 k~~lITGgs--~GIG~aia~~la~~G~~Vv~~~r 40 (305)
T PRK08303 9 KVALVAGAT--RGAGRGIAVELGAAGATVYVTGR 40 (305)
T ss_pred CEEEEeCCC--chHHHHHHHHHHHCCCEEEEEec
Confidence 678999999 47999999999999999998543
No 173
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=75.70 E-value=2.9 Score=41.45 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=27.5
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
.|++||+|+ ++|++++..|-++|.+|...+
T Consensus 2 ~ilV~GatG--~~G~~~~~~L~~~~~~v~~~~ 31 (275)
T COG0702 2 KILVTGATG--FVGGAVVRELLARGHEVRAAV 31 (275)
T ss_pred eEEEEeccc--chHHHHHHHHHhCCCEEEEEE
Confidence 589999998 999999999999999999933
No 174
>PRK05693 short chain dehydrogenase; Provisional
Probab=75.69 E-value=4.3 Score=40.93 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=28.1
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|.|++||++ +=+|+++|..|.++|.+|+.+++
T Consensus 2 k~vlItGas--ggiG~~la~~l~~~G~~V~~~~r 33 (274)
T PRK05693 2 PVVLITGCS--SGIGRALADAFKAAGYEVWATAR 33 (274)
T ss_pred CEEEEecCC--ChHHHHHHHHHHHCCCEEEEEeC
Confidence 568999999 48999999999999999998443
No 175
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=75.68 E-value=4 Score=42.47 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=27.8
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
|.|++||+++ =+|+++|..|+++|.+|++.+
T Consensus 7 k~vlVTGas~--gIG~~~a~~L~~~G~~V~~~~ 37 (322)
T PRK07453 7 GTVIITGASS--GVGLYAAKALAKRGWHVIMAC 37 (322)
T ss_pred CEEEEEcCCC--hHHHHHHHHHHHCCCEEEEEE
Confidence 5699999994 899999999999999999854
No 176
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.60 E-value=3.4 Score=42.13 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=27.7
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|-+++||++++.=+|+|||..|+++|.+|++.++
T Consensus 7 k~~lITGas~~~GIG~aia~~la~~G~~vil~~r 40 (262)
T PRK07984 7 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQ 40 (262)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEec
Confidence 5689999983124999999999999999988443
No 177
>PLN02214 cinnamoyl-CoA reductase
Probab=75.59 E-value=3.1 Score=44.05 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=28.3
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
-+.|++||+++ -+|++++..|.++|.+|..+.
T Consensus 10 ~~~vlVTGatG--fIG~~l~~~L~~~G~~V~~~~ 41 (342)
T PLN02214 10 GKTVCVTGAGG--YIASWIVKILLERGYTVKGTV 41 (342)
T ss_pred CCEEEEECCCc--HHHHHHHHHHHHCcCEEEEEe
Confidence 35799999996 999999999999999998743
No 178
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.48 E-value=4.3 Score=41.64 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=27.7
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
|-|++||+++.+=+|+|+|..|+++|.+|++..
T Consensus 6 k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~ 38 (274)
T PRK08415 6 KKGLIVGVANNKSIAYGIAKACFEQGAELAFTY 38 (274)
T ss_pred cEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEe
Confidence 678999997213599999999999999999843
No 179
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=75.40 E-value=4.3 Score=40.95 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=28.4
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|.|++||+++ =+|++||..|+++|.+|.+.++
T Consensus 11 k~vlVtGas~--giG~~ia~~l~~~G~~V~~~~r 42 (278)
T PRK08277 11 KVAVITGGGG--VLGGAMAKELARAGAKVAILDR 42 (278)
T ss_pred CEEEEeCCCc--hHHHHHHHHHHHCCCEEEEEeC
Confidence 5789999994 8999999999999999998544
No 180
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=75.29 E-value=2.9 Score=42.71 Aligned_cols=31 Identities=29% Similarity=0.403 Sum_probs=27.7
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
.|++||+++ -+|+.+|..|.++|.+|..+++
T Consensus 2 ~vlItG~~G--~iG~~l~~~L~~~g~~V~~~~r 32 (328)
T TIGR03466 2 KVLVTGATG--FVGSAVVRLLLEQGEEVRVLVR 32 (328)
T ss_pred eEEEECCcc--chhHHHHHHHHHCCCEEEEEEe
Confidence 589999996 9999999999999999988543
No 181
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.26 E-value=4.5 Score=40.92 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=26.9
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
|-|++||+++.+=+|+|+|..|+++|.+|++.
T Consensus 7 k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~ 38 (260)
T PRK06997 7 KRILITGLLSNRSIAYGIAKACKREGAELAFT 38 (260)
T ss_pred cEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEE
Confidence 67899997421469999999999999999884
No 182
>PRK12367 short chain dehydrogenase; Provisional
Probab=75.24 E-value=3.2 Score=42.06 Aligned_cols=33 Identities=15% Similarity=0.293 Sum_probs=28.9
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
+.|++||++ +=+|+++|..|.++|.+|++.+++
T Consensus 15 k~~lITGas--~gIG~ala~~l~~~G~~Vi~~~r~ 47 (245)
T PRK12367 15 KRIGITGAS--GALGKALTKAFRAKGAKVIGLTHS 47 (245)
T ss_pred CEEEEEcCC--cHHHHHHHHHHHHCCCEEEEEECC
Confidence 678999999 489999999999999999885443
No 183
>PRK12747 short chain dehydrogenase; Provisional
Probab=75.15 E-value=4 Score=40.49 Aligned_cols=30 Identities=27% Similarity=0.321 Sum_probs=27.2
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
|.+++||+++ =+|++||..|+++|.+|++.
T Consensus 5 k~~lItGas~--gIG~~ia~~l~~~G~~v~~~ 34 (252)
T PRK12747 5 KVALVTGASR--GIGRAIAKRLANDGALVAIH 34 (252)
T ss_pred CEEEEeCCCC--hHHHHHHHHHHHCCCeEEEE
Confidence 5789999994 89999999999999999873
No 184
>PRK12743 oxidoreductase; Provisional
Probab=75.12 E-value=4 Score=40.73 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=27.2
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
|.|++||++ +=||+++|..|.++|.+|.+.
T Consensus 3 k~vlItGas--~giG~~~a~~l~~~G~~V~~~ 32 (256)
T PRK12743 3 QVAIVTASD--SGIGKACALLLAQQGFDIGIT 32 (256)
T ss_pred CEEEEECCC--chHHHHHHHHHHHCCCEEEEE
Confidence 578999999 489999999999999999873
No 185
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=75.06 E-value=3.8 Score=43.26 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=28.7
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
..+.|++||+++ =||+++|.+|.++|.+|+.++
T Consensus 9 ~~~~vLVtG~~G--fIG~~l~~~L~~~G~~V~~~~ 41 (353)
T PLN02896 9 ATGTYCVTGATG--YIGSWLVKLLLQRGYTVHATL 41 (353)
T ss_pred CCCEEEEECCCc--HHHHHHHHHHHHCCCEEEEEe
Confidence 345799999995 999999999999999998743
No 186
>PRK07576 short chain dehydrogenase; Provisional
Probab=74.98 E-value=3.5 Score=41.56 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=29.0
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
-+.|++||++ +-||+++|..|+++|.+|.+.++
T Consensus 9 ~k~ilItGas--ggIG~~la~~l~~~G~~V~~~~r 41 (264)
T PRK07576 9 GKNVVVVGGT--SGINLGIAQAFARAGANVAVASR 41 (264)
T ss_pred CCEEEEECCC--chHHHHHHHHHHHCCCEEEEEeC
Confidence 4679999999 49999999999999999988544
No 187
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=74.85 E-value=3.6 Score=40.97 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=28.6
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
-|-|++||++ +-+|+++|..|+++|.+|++.+
T Consensus 11 ~k~vlVtG~s--~gIG~~la~~l~~~G~~vv~~~ 42 (255)
T PRK06113 11 GKCAIITGAG--AGIGKEIAITFATAGASVVVSD 42 (255)
T ss_pred CCEEEEECCC--chHHHHHHHHHHHCCCeEEEEe
Confidence 4789999999 5999999999999999998843
No 188
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.48 E-value=2.7 Score=44.86 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=28.6
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEe--echhHHH
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVAT--ICKDDYE 501 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~--~~~~~~~ 501 (602)
-|+.||+. |=+||+||+-+.|||-++++ ++++-.+
T Consensus 40 ~vLITGgg--~GlGr~ialefa~rg~~~vl~Din~~~~~ 76 (300)
T KOG1201|consen 40 IVLITGGG--SGLGRLIALEFAKRGAKLVLWDINKQGNE 76 (300)
T ss_pred EEEEeCCC--chHHHHHHHHHHHhCCeEEEEeccccchH
Confidence 58899999 58999999999999998877 4444333
No 189
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=74.29 E-value=3.9 Score=45.43 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=27.8
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
.|++||+++ -||+.++.+|.++|.+|..++
T Consensus 122 kILVTGatG--FIGs~Lv~~Ll~~G~~V~~ld 151 (436)
T PLN02166 122 RIVVTGGAG--FVGSHLVDKLIGRGDEVIVID 151 (436)
T ss_pred EEEEECCcc--HHHHHHHHHHHHCCCEEEEEe
Confidence 699999997 999999999999999999854
No 190
>PRK06484 short chain dehydrogenase; Validated
Probab=74.02 E-value=4.4 Score=44.96 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=29.7
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
.-|.++.||++ +-+|+++|..|+++|.+|++.++
T Consensus 268 ~~k~~lItGas--~gIG~~~a~~l~~~G~~V~~~~r 301 (520)
T PRK06484 268 SPRVVAITGGA--RGIGRAVADRFAAAGDRLLIIDR 301 (520)
T ss_pred CCCEEEEECCC--cHHHHHHHHHHHHCCCEEEEEeC
Confidence 44789999999 48999999999999999999544
No 191
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=73.70 E-value=5.6 Score=42.28 Aligned_cols=140 Identities=21% Similarity=0.137 Sum_probs=76.4
Q ss_pred HhcCCeEEeecccccccccccc-ccchhccCCC-CccEEEeeCCccch-------hhhhhcC-CccCceEEEeccccchh
Q 007475 407 DAKGVKVISLGLLNQGEELNRN-GEIYLERQPN-KLKIKVVDGSSLAA-------AVVVNSL-PKTTAHVLLRGTVTANK 476 (602)
Q Consensus 407 ~~~g~kv~sl~~lnk~~~ln~~-g~l~~~~~p~-~l~vrvv~g~tl~a-------a~vl~~i-p~~~~~v~l~g~~~~~k 476 (602)
+-.|+|++|.--=|....|... |.+.+. .|+ ..=+=++||+.||+ |+..+-+ |++.+.+.+.|+. .
T Consensus 63 ~~~gvK~v~~~p~N~~~glP~~~g~i~L~-D~~TG~p~ai~dg~~lT~~RTaA~sala~~~La~~~~~~l~viGaG---~ 138 (313)
T PF02423_consen 63 PVAGVKWVSVFPGNPKRGLPSIQGVILLF-DPETGEPLAIMDGTWLTALRTAAVSALAARYLARPDARTLGVIGAG---V 138 (313)
T ss_dssp TEEEEEEEEEETTCGGGTSSSEEEEEEEE-ETTT--EEEEEESHHHHHHHHHHHHHHHHHHHS-TT--EEEEE--S---H
T ss_pred cEEEEEEEEecCCccccCCCceeEEEEEE-ECCCCCEEEEecccchhhhHHHHHHHHHHHHhCcCCCceEEEECCC---H
Confidence 4689999998877877777543 444333 333 34456999999974 3333333 7899999999999 9
Q ss_pred hHHHHHHHhhc-CCcEEE-e--echhHHHHHHhcCchhhhccceecccccc--ccceEEEEcCCCCHHHh-------hcC
Q 007475 477 VANAVASSLCQ-MGIKVA-T--ICKDDYEKLKLRIPVEAQHNLVLSTSYAA--HKTKIWLVGDDLTGKEQ-------ARA 543 (602)
Q Consensus 477 ~~~aia~~lc~-~~~~v~-~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~k~w~vg~~~~~~eq-------~~a 543 (602)
.|+.-+.++|+ ++++-+ + -+.++-+++.++... ..-....+.+-++ .++-+-+ -+|+..+ .|.
T Consensus 139 QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-~~~~v~~~~~~~~av~~aDii~---taT~s~~~~P~~~~~~l 214 (313)
T PF02423_consen 139 QARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-LGVPVVAVDSAEEAVRGADIIV---TATPSTTPAPVFDAEWL 214 (313)
T ss_dssp HHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-CCTCEEEESSHHHHHTTSSEEE---E----SSEEESB-GGGS
T ss_pred HHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-ccccceeccchhhhcccCCEEE---EccCCCCCCccccHHHc
Confidence 99999999983 555444 4 334444555554333 2112223334443 4554322 2444444 688
Q ss_pred CCCCeeeeccc
Q 007475 544 PKGTIFIPYTQ 554 (602)
Q Consensus 544 ~~gt~f~~~~~ 554 (602)
++|+|.....-
T Consensus 215 ~~g~hi~~iGs 225 (313)
T PF02423_consen 215 KPGTHINAIGS 225 (313)
T ss_dssp -TT-EEEE-S-
T ss_pred CCCcEEEEecC
Confidence 99999988764
No 192
>PRK07832 short chain dehydrogenase; Provisional
Probab=73.62 E-value=5.1 Score=40.43 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=27.6
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
+.|++||++ +=+|+++|..|+++|.+|+++++
T Consensus 1 k~vlItGas--~giG~~la~~la~~G~~vv~~~r 32 (272)
T PRK07832 1 KRCFVTGAA--SGIGRATALRLAAQGAELFLTDR 32 (272)
T ss_pred CEEEEeCCC--CHHHHHHHHHHHHCCCEEEEEeC
Confidence 358999999 48999999999999999988443
No 193
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=73.62 E-value=3.6 Score=45.50 Aligned_cols=100 Identities=22% Similarity=0.334 Sum_probs=57.9
Q ss_pred ceeEEeeccCc-eeccchhhhHHHHHHHHHHHHHHhcCCeEEee--ccccccccccccccchhccCCCCccEEEeeCCcc
Q 007475 374 LQTWVVPRYIV-QYNLPWRREAINSLIEEAILEADAKGVKVISL--GLLNQGEELNRNGEIYLERQPNKLKIKVVDGSSL 450 (602)
Q Consensus 374 ~~tw~ipr~~~-~y~~~~~~~~in~~ie~ai~~a~~~g~kv~sl--~~lnk~~~ln~~g~l~~~~~p~~l~vrvv~g~tl 450 (602)
...-++|.-+- -|..|.-.+.+ ..-.+.|+.|+.= |.|-.+|. |-| |-|+ . ..
T Consensus 117 ~pvvi~Pamn~~m~~~p~~~~Nl--------~~L~~~G~~ii~P~~g~la~~~~--g~g-----r~~~-~-------~~- 172 (399)
T PRK05579 117 APVLVAPAMNTQMWENPATQRNL--------ATLRSRGVEIIGPASGRLACGDV--GPG-----RMAE-P-------EE- 172 (399)
T ss_pred CCEEEEeCCChhHcCCHHHHHHH--------HHHHHCCCEEECCCCccccCCCc--CCC-----CCCC-H-------HH-
Confidence 35666675554 34444444444 4444579999854 34433333 222 3454 1 11
Q ss_pred chhhhhhcC-Cc--cCceEEEecc---------------ccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 451 AAAVVVNSL-PK--TTAHVLLRGT---------------VTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 451 ~aa~vl~~i-p~--~~~~v~l~g~---------------~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
....|.+.+ ++ .-+.|+.||. .| .|+|+|||.+|.++|.+|.+++..
T Consensus 173 I~~~~~~~~~~~~l~gk~vlITgG~T~E~ID~VR~isN~SS-G~~G~aiA~~l~~~Ga~V~~v~~~ 237 (399)
T PRK05579 173 IVAAAERALSPKDLAGKRVLITAGPTREPIDPVRYITNRSS-GKMGYALARAAARRGADVTLVSGP 237 (399)
T ss_pred HHHHHHHHhhhcccCCCEEEEeCCCccccccceeeeccCCc-chHHHHHHHHHHHCCCEEEEeCCC
Confidence 122233333 23 3468999998 23 399999999999999999985543
No 194
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=73.57 E-value=4.1 Score=42.33 Aligned_cols=58 Identities=21% Similarity=0.281 Sum_probs=38.9
Q ss_pred eCCccchhhhh-hcCCccCceEEEeccccchhhHHHHHHHhhcCC-cEEEeech--hHHHHHHhc
Q 007475 446 DGSSLAAAVVV-NSLPKTTAHVLLRGTVTANKVANAVASSLCQMG-IKVATICK--DDYEKLKLR 506 (602)
Q Consensus 446 ~g~tl~aa~vl-~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~-~~v~~~~~--~~~~~~~~~ 506 (602)
||....+|.-- ..+...-+.|++.|+. -+|||+|.+|+++| -+|.+.++ ++-+++.++
T Consensus 105 D~~G~~~~l~~~~~~~~~~k~vlVlGaG---g~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~ 166 (278)
T PRK00258 105 DGIGFVRALEERLGVDLKGKRILILGAG---GAARAVILPLLDLGVAEITIVNRTVERAEELAKL 166 (278)
T ss_pred cHHHHHHHHHhccCCCCCCCEEEEEcCc---HHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence 45555545431 1233445789999986 89999999999999 57888444 455555554
No 195
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=73.56 E-value=3.5 Score=39.95 Aligned_cols=27 Identities=22% Similarity=0.397 Sum_probs=25.2
Q ss_pred EEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 466 VLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 466 v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
|++||+++ =||++++.+|.++|.+|+.
T Consensus 1 IlI~GatG--~iG~~l~~~l~~~g~~v~~ 27 (236)
T PF01370_consen 1 ILITGATG--FIGSALVRQLLKKGHEVIV 27 (236)
T ss_dssp EEEETTTS--HHHHHHHHHHHHTTTEEEE
T ss_pred EEEEccCC--HHHHHHHHHHHHcCCcccc
Confidence 78999996 9999999999999999775
No 196
>PRK09134 short chain dehydrogenase; Provisional
Probab=73.28 E-value=4.8 Score=40.14 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=27.2
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
-+.|++||++ +-+|+++|..|+++|.+|++
T Consensus 9 ~k~vlItGas--~giG~~la~~l~~~g~~v~~ 38 (258)
T PRK09134 9 PRAALVTGAA--RRIGRAIALDLAAHGFDVAV 38 (258)
T ss_pred CCEEEEeCCC--cHHHHHHHHHHHHCCCEEEE
Confidence 3579999999 49999999999999999977
No 197
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=73.25 E-value=2.9 Score=42.02 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=26.9
Q ss_pred EEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 466 VLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 466 v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|++||+++ -+|++++..|.++|.+|..+++
T Consensus 1 vlVtGatG--~iG~~l~~~L~~~g~~V~~~~r 30 (292)
T TIGR01777 1 ILITGGTG--FIGRALTQRLTKDGHEVTILTR 30 (292)
T ss_pred CEEEcccc--hhhHHHHHHHHHcCCEEEEEeC
Confidence 68999996 9999999999999999988544
No 198
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.09 E-value=5.5 Score=40.70 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=27.7
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
|.|++||+++.+=+|+|||..|+++|.+|++..
T Consensus 11 k~~lItGas~~~GIG~aia~~la~~G~~V~l~~ 43 (272)
T PRK08159 11 KRGLILGVANNRSIAWGIAKACRAAGAELAFTY 43 (272)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEc
Confidence 678999997213699999999999999998843
No 199
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=73.05 E-value=4.1 Score=42.29 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=26.7
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
.|++||+++ -||+++|.+|.++|.+|++.
T Consensus 2 ~vlVtGatG--~iG~~l~~~L~~~g~~V~~~ 30 (338)
T PRK10675 2 RVLVTGGSG--YIGSHTCVQLLQNGHDVVIL 30 (338)
T ss_pred eEEEECCCC--hHHHHHHHHHHHCCCeEEEE
Confidence 489999996 99999999999999999884
No 200
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.98 E-value=5.4 Score=41.47 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=28.3
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
+-|-+++||+++ =+|+++|..|+++|.+|++.
T Consensus 11 ~~k~~lVTGas~--gIG~~ia~~L~~~Ga~Vv~~ 42 (306)
T PRK07792 11 SGKVAVVTGAAA--GLGRAEALGLARLGATVVVN 42 (306)
T ss_pred CCCEEEEECCCC--hHHHHHHHHHHHCCCEEEEe
Confidence 346799999994 89999999999999999984
No 201
>PLN02686 cinnamoyl-CoA reductase
Probab=72.89 E-value=4.4 Score=43.53 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=28.6
Q ss_pred ccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 461 KTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 461 ~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
..-|.|++||+++ -||++++..|.++|.+|..
T Consensus 51 ~~~k~VLVTGatG--fIG~~lv~~L~~~G~~V~~ 82 (367)
T PLN02686 51 AEARLVCVTGGVS--FLGLAIVDRLLRHGYSVRI 82 (367)
T ss_pred CCCCEEEEECCch--HHHHHHHHHHHHCCCEEEE
Confidence 3457899999995 9999999999999999976
No 202
>PRK06138 short chain dehydrogenase; Provisional
Probab=72.84 E-value=5.5 Score=39.16 Aligned_cols=31 Identities=16% Similarity=0.242 Sum_probs=27.8
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
|-+++||++ +-+|+++|..|.++|.+|+++.
T Consensus 6 k~~lItG~s--g~iG~~la~~l~~~G~~v~~~~ 36 (252)
T PRK06138 6 RVAIVTGAG--SGIGRATAKLFAREGARVVVAD 36 (252)
T ss_pred cEEEEeCCC--chHHHHHHHHHHHCCCeEEEec
Confidence 578999999 4999999999999999998844
No 203
>PRK06701 short chain dehydrogenase; Provisional
Probab=72.80 E-value=4.5 Score=41.72 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=28.6
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
+-|++||+++ =||+++|..|+++|.+|.+.++.
T Consensus 47 k~iLItGasg--gIG~~la~~l~~~G~~V~l~~r~ 79 (290)
T PRK06701 47 KVALITGGDS--GIGRAVAVLFAKEGADIAIVYLD 79 (290)
T ss_pred CEEEEeCCCc--HHHHHHHHHHHHCCCEEEEEeCC
Confidence 5699999994 89999999999999999885443
No 204
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=72.75 E-value=5.2 Score=40.26 Aligned_cols=71 Identities=21% Similarity=0.300 Sum_probs=57.3
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEeechhHHHHHHhcCchhhhccceecc-cccc--ccceEEEEcC
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVATICKDDYEKLKLRIPVEAQHNLVLST-SYAA--HKTKIWLVGD 533 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~--~~~k~w~vg~ 533 (602)
||=-||++|..+=.-+...||.+|.++|+-|+-++.-+|=- +++-|++...-|...- +|++ +..|+-|||=
T Consensus 2 Dt~~v~~SGDgGw~~~d~~~a~~l~~~G~~VvGvdsl~Yfw-~~rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiGY 75 (192)
T PF06057_consen 2 DTLAVFFSGDGGWRDLDKQIAEALAKQGVPVVGVDSLRYFW-SERTPEQTAADLARIIRHYRARWGRKRVVLIGY 75 (192)
T ss_pred CEEEEEEeCCCCchhhhHHHHHHHHHCCCeEEEechHHHHh-hhCCHHHHHHHHHHHHHHHHHHhCCceEEEEee
Confidence 45568999999878899999999999999999977777764 3456888888877444 7877 6668999984
No 205
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.69 E-value=5.7 Score=40.12 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=27.1
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
|-+++||+++.+=+|+|||..|+++|.+|++.
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G~~v~~~ 39 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAGAKLVFT 39 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEe
Confidence 67899998710369999999999999999984
No 206
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=72.64 E-value=5.7 Score=39.27 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=28.9
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
+-|++||+++ =+|+++|..|.++|.+|.+.+++
T Consensus 8 ~~vlItGasg--~iG~~la~~l~~~G~~v~~~~r~ 40 (262)
T PRK13394 8 KTAVVTGAAS--GIGKEIALELARAGAAVAIADLN 40 (262)
T ss_pred CEEEEECCCC--hHHHHHHHHHHHCCCeEEEEeCC
Confidence 6799999995 89999999999999999985443
No 207
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.62 E-value=4.3 Score=40.97 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=27.3
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
|-+++||+++++=+|+|+|..|.++|.+|++..
T Consensus 9 k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~ 41 (260)
T PRK06603 9 KKGLITGIANNMSISWAIAQLAKKHGAELWFTY 41 (260)
T ss_pred cEEEEECCCCCcchHHHHHHHHHHcCCEEEEEe
Confidence 568999998312399999999999999999843
No 208
>PRK07831 short chain dehydrogenase; Provisional
Probab=72.55 E-value=5.5 Score=39.81 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=27.6
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
+.|++||+++ +=+|+++|..|+++|.+|++.+
T Consensus 18 k~vlItG~sg-~gIG~~ia~~l~~~G~~V~~~~ 49 (262)
T PRK07831 18 KVVLVTAAAG-TGIGSATARRALEEGARVVISD 49 (262)
T ss_pred CEEEEECCCc-ccHHHHHHHHHHHcCCEEEEEe
Confidence 6799999984 2499999999999999999843
No 209
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=72.54 E-value=4 Score=41.15 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=27.1
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
|-|+.||+++.+=+|++||..|+++|.+|.+.
T Consensus 7 k~~lItGas~~~GIG~aia~~la~~G~~v~~~ 38 (258)
T PRK07370 7 KKALVTGIANNRSIAWGIAQQLHAAGAELGIT 38 (258)
T ss_pred cEEEEeCCCCCCchHHHHHHHHHHCCCEEEEE
Confidence 67899998621469999999999999999873
No 210
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=72.47 E-value=5.4 Score=39.27 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=27.1
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+.|++||++ +=||+++|..|.++|.+|++
T Consensus 7 ~~~lItG~s--~~iG~~la~~l~~~g~~v~~ 35 (247)
T PRK12935 7 KVAIVTGGA--KGIGKAITVALAQEGAKVVI 35 (247)
T ss_pred CEEEEECCC--CHHHHHHHHHHHHcCCEEEE
Confidence 679999999 59999999999999999987
No 211
>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=72.08 E-value=6.1 Score=38.99 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=27.7
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
..+.|++||++ +=+|+++|..|.++|-+|++
T Consensus 4 ~~~~ilITGas--~GiG~aia~~l~~~G~~v~~ 34 (251)
T COG1028 4 SGKVALVTGAS--SGIGRAIARALAREGARVVV 34 (251)
T ss_pred CCCEEEEeCCC--CHHHHHHHHHHHHCCCeEEE
Confidence 35679999999 58999999999999999777
No 212
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=72.02 E-value=6 Score=39.03 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=28.0
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|.|++||++ +=+|+++|..|+++|.+|+++++
T Consensus 1 k~~lItG~s--g~iG~~la~~l~~~G~~v~~~~r 32 (254)
T TIGR02415 1 KVALVTGGA--QGIGKGIAERLAKDGFAVAVADL 32 (254)
T ss_pred CEEEEeCCC--chHHHHHHHHHHHCCCEEEEEeC
Confidence 468999999 49999999999999999988543
No 213
>PRK07904 short chain dehydrogenase; Provisional
Probab=71.83 E-value=4.3 Score=40.92 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=27.4
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCC-cEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMG-IKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~-~~v~~~~~ 497 (602)
+-|++||++ +-+|+++|..|.++| .+|.+..+
T Consensus 9 ~~vlItGas--~giG~~la~~l~~~gg~~V~~~~r 41 (253)
T PRK07904 9 QTILLLGGT--SEIGLAICERYLKNAPARVVLAAL 41 (253)
T ss_pred cEEEEEcCC--cHHHHHHHHHHHhcCCCeEEEEeC
Confidence 468999999 599999999999995 89988443
No 214
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=71.77 E-value=5.1 Score=40.35 Aligned_cols=30 Identities=20% Similarity=0.405 Sum_probs=27.0
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
+.|+.||+++ =+|+++|..|+++|.+|++.
T Consensus 2 ~~~lITGas~--gIG~~~a~~l~~~G~~V~~~ 31 (267)
T TIGR02685 2 PAAVVTGAAK--RIGSSIAVALHQEGYRVVLH 31 (267)
T ss_pred CEEEEeCCCC--cHHHHHHHHHHhCCCeEEEE
Confidence 4589999994 79999999999999999984
No 215
>PRK09242 tropinone reductase; Provisional
Probab=71.66 E-value=6.1 Score=39.28 Aligned_cols=32 Identities=19% Similarity=0.388 Sum_probs=28.3
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|.|++||++ +=+|+++|..|+++|.+|+++++
T Consensus 10 k~~lItGa~--~gIG~~~a~~l~~~G~~v~~~~r 41 (257)
T PRK09242 10 QTALITGAS--KGIGLAIAREFLGLGADVLIVAR 41 (257)
T ss_pred CEEEEeCCC--chHHHHHHHHHHHcCCEEEEEeC
Confidence 678999999 48999999999999999998543
No 216
>PRK07814 short chain dehydrogenase; Provisional
Probab=71.57 E-value=6.3 Score=39.56 Aligned_cols=33 Identities=15% Similarity=0.270 Sum_probs=28.6
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
-+-|++||+++ =||+++|..|.++|.+|++.++
T Consensus 10 ~~~vlItGasg--gIG~~~a~~l~~~G~~Vi~~~r 42 (263)
T PRK07814 10 DQVAVVTGAGR--GLGAAIALAFAEAGADVLIAAR 42 (263)
T ss_pred CCEEEEECCCC--hHHHHHHHHHHHCCCEEEEEeC
Confidence 35699999994 8999999999999999998543
No 217
>PLN02240 UDP-glucose 4-epimerase
Probab=71.51 E-value=4.7 Score=42.08 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=28.2
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
+.|++||+++ -||++++..|.++|.+|+.++
T Consensus 6 ~~vlItGatG--~iG~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 6 RTILVTGGAG--YIGSHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CEEEEECCCC--hHHHHHHHHHHHCCCEEEEEe
Confidence 5799999996 999999999999999998854
No 218
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=71.43 E-value=4.3 Score=42.02 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=27.2
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
|.|++||+++ =+|+++|..|.++|.+|...
T Consensus 6 k~vlVtG~~G--~IG~~l~~~L~~~G~~V~~~ 35 (325)
T PLN02989 6 KVVCVTGASG--YIASWIVKLLLFRGYTINAT 35 (325)
T ss_pred CEEEEECCch--HHHHHHHHHHHHCCCEEEEE
Confidence 6799999995 89999999999999999763
No 219
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=71.41 E-value=2.6 Score=45.31 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=44.3
Q ss_pred CccCceEEEeccccchhhHHHHHHHhhcCCcEEEe--echhHHHHHHhcC-chhhhccceeccc
Q 007475 460 PKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT--ICKDDYEKLKLRI-PVEAQHNLVLSTS 520 (602)
Q Consensus 460 p~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~--~~~~~~~~~~~~~-~~~~~~~l~~~~~ 520 (602)
|-+.|-||.||.- |=.|+..|.+|-++|.+|.- ..++-=+.++.+. .+..+--.+.+||
T Consensus 26 ~~~~k~VlITGCD--SGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~s~rl~t~~LDVT~ 87 (322)
T KOG1610|consen 26 SLSDKAVLITGCD--SGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETKSPRLRTLQLDVTK 87 (322)
T ss_pred ccCCcEEEEecCC--cHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhcCCcceeEeeccCC
Confidence 3466779999999 69999999999999999998 5666677888886 3333332335664
No 220
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.36 E-value=5.2 Score=39.18 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=28.3
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
+.+++||+++ =+|+++|..|+++|.+|++.+++
T Consensus 6 ~~~lItG~~g--~iG~~~a~~l~~~G~~vi~~~r~ 38 (253)
T PRK08217 6 KVIVITGGAQ--GLGRAMAEYLAQKGAKLALIDLN 38 (253)
T ss_pred CEEEEECCCc--hHHHHHHHHHHHCCCEEEEEeCC
Confidence 4689999984 89999999999999999885443
No 221
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=71.21 E-value=4 Score=41.41 Aligned_cols=30 Identities=10% Similarity=0.244 Sum_probs=24.2
Q ss_pred EEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 467 LLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 467 ~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|+|...+ +++|+|||.+|.++|.+|.+.+.
T Consensus 18 ~itN~SS-GgIG~AIA~~la~~Ga~Vvlv~~ 47 (227)
T TIGR02114 18 SITNHST-GHLGKIITETFLSAGHEVTLVTT 47 (227)
T ss_pred eecCCcc-cHHHHHHHHHHHHCCCEEEEEcC
Confidence 4454444 79999999999999999998653
No 222
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=71.04 E-value=9.8 Score=36.09 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=30.7
Q ss_pred EEEeccccchhhHHHHHHHhhcCCcEEEe--echhHHHHHHhc
Q 007475 466 VLLRGTVTANKVANAVASSLCQMGIKVAT--ICKDDYEKLKLR 506 (602)
Q Consensus 466 v~l~g~~~~~k~~~aia~~lc~~~~~v~~--~~~~~~~~~~~~ 506 (602)
|-..|+. -.|.|+|..|.++|.+|.| .+++..+.|+++
T Consensus 2 I~ViGaG---~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~ 41 (157)
T PF01210_consen 2 IAVIGAG---NWGTALAALLADNGHEVTLWGRDEEQIEEINET 41 (157)
T ss_dssp EEEESSS---HHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHH
T ss_pred EEEECcC---HHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHh
Confidence 5567777 5799999999999999999 444567777765
No 223
>PRK07340 ornithine cyclodeaminase; Validated
Probab=70.87 E-value=11 Score=40.06 Aligned_cols=84 Identities=19% Similarity=0.293 Sum_probs=60.1
Q ss_pred hcCCeEEeeccccccccccc-cccchhccCCCCccEEEeeCCccch-------hhhhhcC-CccCceEEEeccccchhhH
Q 007475 408 AKGVKVISLGLLNQGEELNR-NGEIYLERQPNKLKIKVVDGSSLAA-------AVVVNSL-PKTTAHVLLRGTVTANKVA 478 (602)
Q Consensus 408 ~~g~kv~sl~~lnk~~~ln~-~g~l~~~~~p~~l~vrvv~g~tl~a-------a~vl~~i-p~~~~~v~l~g~~~~~k~~ 478 (602)
-.|+|+++.--=|..+.|.. .|.+.+.---...-.=++||+.||+ |+-.+-+ +++.+.|.+.|+. ..|
T Consensus 61 ~~g~K~~~~~p~N~~~glp~~~g~i~l~d~~tG~p~a~~d~~~lT~~RTaA~sala~~~La~~~~~~v~IiGaG---~qa 137 (304)
T PRK07340 61 LAITKLVTVCPGNAARGLPTIQGEVVVADAATGERLFLLDGPTVTGRRTAAVSLLAARTLAPAPPGDLLLIGTG---VQA 137 (304)
T ss_pred ccEEEEEEeCCCCccCCCCcceEEEEEEECCCCcEEEEEcChhHHHHHHHHHHHHHHHHhCCCCCCEEEEECCc---HHH
Confidence 46899998766666555443 3444444333356677899999974 4455556 6799999999998 999
Q ss_pred HHHHHHhhc-CCcE-EEe
Q 007475 479 NAVASSLCQ-MGIK-VAT 494 (602)
Q Consensus 479 ~aia~~lc~-~~~~-v~~ 494 (602)
++.+.++|+ ++++ |.+
T Consensus 138 ~~~~~al~~~~~~~~v~v 155 (304)
T PRK07340 138 RAHLEAFAAGLPVRRVWV 155 (304)
T ss_pred HHHHHHHHHhCCCCEEEE
Confidence 999999995 6754 555
No 224
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=70.87 E-value=4.5 Score=39.55 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=24.4
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCC--cEEEe
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMG--IKVAT 494 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~--~~v~~ 494 (602)
+.|++||++ +-+|++||.+|+++| ++|..
T Consensus 1 ~~vlItGas--~gIG~~ia~~l~~~~~~~~v~~ 31 (235)
T PRK09009 1 MNILIVGGS--GGIGKAMVKQLLERYPDATVHA 31 (235)
T ss_pred CEEEEECCC--ChHHHHHHHHHHHhCCCCEEEE
Confidence 368999999 599999999999984 66654
No 225
>PRK12827 short chain dehydrogenase; Provisional
Probab=70.83 E-value=4.7 Score=39.34 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=26.9
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+.|++||+++ =+|+++|..|+++|.+|++
T Consensus 7 ~~ilItGasg--~iG~~la~~l~~~g~~v~~ 35 (249)
T PRK12827 7 RRVLITGGSG--GLGRAIAVRLAADGADVIV 35 (249)
T ss_pred CEEEEECCCC--hHHHHHHHHHHHCCCeEEE
Confidence 6799999994 8999999999999999987
No 226
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=70.77 E-value=6.2 Score=38.42 Aligned_cols=32 Identities=25% Similarity=0.454 Sum_probs=27.8
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|-+++||+++ =+|+++|..|.++|.+|+++.+
T Consensus 1 k~~lItG~sg--~iG~~la~~l~~~G~~v~~~~r 32 (242)
T TIGR01829 1 RIALVTGGMG--GIGTAICQRLAKDGYRVAANCG 32 (242)
T ss_pred CEEEEECCCC--hHHHHHHHHHHHCCCEEEEEeC
Confidence 4579999995 8999999999999999988544
No 227
>PRK06172 short chain dehydrogenase; Provisional
Probab=70.46 E-value=6.7 Score=38.81 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=28.4
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|-|++||+++ =+|+++|..|+++|.+|+..++
T Consensus 8 k~ilItGas~--~iG~~ia~~l~~~G~~v~~~~r 39 (253)
T PRK06172 8 KVALVTGGAA--GIGRATALAFAREGAKVVVADR 39 (253)
T ss_pred CEEEEeCCCc--hHHHHHHHHHHHcCCEEEEEeC
Confidence 6789999994 8999999999999999998543
No 228
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=70.33 E-value=6.9 Score=40.03 Aligned_cols=44 Identities=18% Similarity=0.211 Sum_probs=33.0
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEe--echhHHHHHHhcCc
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVAT--ICKDDYEKLKLRIP 508 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~--~~~~~~~~~~~~~~ 508 (602)
.|-+..||+. |-+|||||..|.++|.||.+ .+++.=+.--+..|
T Consensus 14 sk~~~vtGg~--sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~ 59 (256)
T KOG1200|consen 14 SKVAAVTGGS--SGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLG 59 (256)
T ss_pred cceeEEecCC--chHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcC
Confidence 4556889999 69999999999999999999 44444444444444
No 229
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.26 E-value=4.8 Score=40.33 Aligned_cols=32 Identities=13% Similarity=0.270 Sum_probs=27.5
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
|-|++||+++++=+|+++|..|+++|.+|++.
T Consensus 7 k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~ 38 (256)
T PRK12859 7 KVAVVTGVSRLDGIGAAICKELAEAGADIFFT 38 (256)
T ss_pred cEEEEECCCCCCChHHHHHHHHHHCCCeEEEE
Confidence 67899999832359999999999999999884
No 230
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=70.11 E-value=5.1 Score=42.42 Aligned_cols=31 Identities=13% Similarity=0.162 Sum_probs=28.1
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
+.|++||+++ =+|+.++.+|.++|.+|+.++
T Consensus 16 ~~vlVtGatG--fiG~~lv~~L~~~g~~V~~~d 46 (348)
T PRK15181 16 KRWLITGVAG--FIGSGLLEELLFLNQTVIGLD 46 (348)
T ss_pred CEEEEECCcc--HHHHHHHHHHHHCCCEEEEEe
Confidence 6799999997 999999999999999998743
No 231
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=69.87 E-value=4.6 Score=40.88 Aligned_cols=30 Identities=10% Similarity=0.158 Sum_probs=26.1
Q ss_pred eEEEeccccchhhHHHHHHHhhcCC--cEEEeec
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMG--IKVATIC 496 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~--~~v~~~~ 496 (602)
.|++||+++ .+|++++..|.++| ++|+..+
T Consensus 1 ~ilItGatG--~iG~~l~~~l~~~~~~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAG--FIGSNFVRYILNEHPDAEVIVLD 32 (317)
T ss_pred CEEEEcCCc--hHHHHHHHHHHHhCCCCEEEEec
Confidence 389999996 99999999999987 8888754
No 232
>PRK08278 short chain dehydrogenase; Provisional
Probab=69.85 E-value=5.3 Score=40.57 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=28.3
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|-|++||+++ =+|++||..|+++|.+|++.++
T Consensus 7 k~vlItGas~--gIG~~ia~~l~~~G~~V~~~~r 38 (273)
T PRK08278 7 KTLFITGASR--GIGLAIALRAARDGANIVIAAK 38 (273)
T ss_pred CEEEEECCCc--hHHHHHHHHHHHCCCEEEEEec
Confidence 5789999994 8999999999999999998544
No 233
>PRK12744 short chain dehydrogenase; Provisional
Probab=69.84 E-value=4.8 Score=40.14 Aligned_cols=29 Identities=24% Similarity=0.393 Sum_probs=26.3
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
|.|++||+++ =+|+++|..|+++|.+|++
T Consensus 9 k~vlItGa~~--gIG~~~a~~l~~~G~~vv~ 37 (257)
T PRK12744 9 KVVLIAGGAK--NLGGLIARDLAAQGAKAVA 37 (257)
T ss_pred cEEEEECCCc--hHHHHHHHHHHHCCCcEEE
Confidence 6799999995 8999999999999999666
No 234
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=69.81 E-value=6.4 Score=38.48 Aligned_cols=29 Identities=34% Similarity=0.353 Sum_probs=26.4
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+-|++||+++ =+|++++..|.++|.+|.+
T Consensus 2 ~~~lItGa~g--~iG~~l~~~l~~~g~~v~~ 30 (247)
T PRK09730 2 AIALVTGGSR--GIGRATALLLAQEGYTVAV 30 (247)
T ss_pred CEEEEeCCCc--hHHHHHHHHHHHCCCEEEE
Confidence 4689999994 9999999999999999976
No 235
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=69.72 E-value=5.5 Score=42.22 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=33.2
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEe--echhHHHHHHhc
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVAT--ICKDDYEKLKLR 506 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~--~~~~~~~~~~~~ 506 (602)
|-|+.|||. |=+|.++|..|.++|.+++. -+.+|.++++++
T Consensus 13 kvVvITGAS--sGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~ 55 (282)
T KOG1205|consen 13 KVVLITGAS--SGIGEALAYELAKRGAKLVLVARRARRLERVAEE 55 (282)
T ss_pred CEEEEeCCC--cHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHH
Confidence 568999999 68999999999999997554 466777777444
No 236
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=69.56 E-value=5 Score=42.26 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=28.4
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
+.|++||+++ =+|+++|..|+++|.+|+.+++
T Consensus 5 k~ilItGatG--~IG~~l~~~L~~~G~~V~~~~r 36 (349)
T TIGR02622 5 KKVLVTGHTG--FKGSWLSLWLLELGAEVYGYSL 36 (349)
T ss_pred CEEEEECCCC--hhHHHHHHHHHHCCCEEEEEeC
Confidence 6799999995 7999999999999999987543
No 237
>PRK08219 short chain dehydrogenase; Provisional
Probab=69.47 E-value=6.4 Score=37.94 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=27.3
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
+-|++||+++ -+|+++|..|+++ .+|..+++
T Consensus 4 ~~vlVtG~~g--~iG~~l~~~l~~~-~~V~~~~r 34 (227)
T PRK08219 4 PTALITGASR--GIGAAIARELAPT-HTLLLGGR 34 (227)
T ss_pred CEEEEecCCc--HHHHHHHHHHHhh-CCEEEEeC
Confidence 5799999995 9999999999999 89888554
No 238
>PRK07041 short chain dehydrogenase; Provisional
Probab=69.35 E-value=5.4 Score=38.77 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=25.9
Q ss_pred EEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 467 LLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 467 ~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
++||++ +-+|+++|..|+++|.+|++.+++
T Consensus 1 lItGas--~~iG~~~a~~l~~~G~~v~~~~r~ 30 (230)
T PRK07041 1 LVVGGS--SGIGLALARAFAAEGARVTIASRS 30 (230)
T ss_pred CeecCC--ChHHHHHHHHHHHCCCEEEEEeCC
Confidence 479999 499999999999999999885543
No 239
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=69.04 E-value=7.2 Score=40.80 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=27.7
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCC-cEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMG-IKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~-~~v~~~~~ 497 (602)
+-|++||++ +=+|+++|..|+++| .+|++.++
T Consensus 4 k~vlITGas--~GIG~aia~~L~~~G~~~V~l~~r 36 (314)
T TIGR01289 4 PTVIITGAS--SGLGLYAAKALAATGEWHVIMACR 36 (314)
T ss_pred CEEEEECCC--ChHHHHHHHHHHHcCCCEEEEEeC
Confidence 468999999 479999999999999 99988443
No 240
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=69.00 E-value=8.7 Score=37.50 Aligned_cols=88 Identities=18% Similarity=0.228 Sum_probs=53.6
Q ss_pred cchhhhhhcCCc--cCceEEEeccccchh-hHHHHHHHhhcCCcEEEeechhHHHHHHhcCchhhhccce-ecccccccc
Q 007475 450 LAAAVVVNSLPK--TTAHVLLRGTVTANK-VANAVASSLCQMGIKVATICKDDYEKLKLRIPVEAQHNLV-LSTSYAAHK 525 (602)
Q Consensus 450 l~aa~vl~~ip~--~~~~v~l~g~~~~~k-~~~aia~~lc~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~ 525 (602)
.++.-.+.+++. +-+.|++.|+. + +|..+|.+|.++|.+|.+.++. ++.+++.+.. -.+| -.|. .
T Consensus 29 ~a~v~l~~~~~~~l~gk~vlViG~G---~~~G~~~a~~L~~~g~~V~v~~r~-~~~l~~~l~~---aDiVIsat~----~ 97 (168)
T cd01080 29 AGILELLKRYGIDLAGKKVVVVGRS---NIVGKPLAALLLNRNATVTVCHSK-TKNLKEHTKQ---ADIVIVAVG----K 97 (168)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCc---HHHHHHHHHHHhhCCCEEEEEECC-chhHHHHHhh---CCEEEEcCC----C
Confidence 344445666764 55899999998 7 5999999999999998884432 3333322111 1122 2222 2
Q ss_pred ceEEEEcCCCCHHHhhcCCCCCeeeecccCCCc
Q 007475 526 TKIWLVGDDLTGKEQARAPKGTIFIPYTQIPPR 558 (602)
Q Consensus 526 ~k~w~vg~~~~~~eq~~a~~gt~f~~~~~~pp~ 558 (602)
.+ ++ ++ | ..++|+.++-.. +|+.
T Consensus 98 ~~--ii----~~-~--~~~~~~viIDla-~prd 120 (168)
T cd01080 98 PG--LV----KG-D--MVKPGAVVIDVG-INRV 120 (168)
T ss_pred Cc--ee----cH-H--HccCCeEEEEcc-CCCc
Confidence 23 23 22 2 245689999999 8883
No 241
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=68.95 E-value=5.3 Score=40.32 Aligned_cols=31 Identities=16% Similarity=0.340 Sum_probs=27.2
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
.|++||+++ -+|++++..|+++|.+|...++
T Consensus 1 kilv~G~tG--~iG~~l~~~l~~~g~~v~~~~r 31 (287)
T TIGR01214 1 RILITGANG--QLGRELVQQLSPEGRVVVALTS 31 (287)
T ss_pred CEEEEcCCC--HHHHHHHHHHHhcCCEEEEeCC
Confidence 379999996 9999999999999999987443
No 242
>PRK06198 short chain dehydrogenase; Provisional
Probab=68.73 E-value=5.2 Score=39.70 Aligned_cols=32 Identities=16% Similarity=0.286 Sum_probs=27.7
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcE-EEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIK-VATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~-v~~~~~ 497 (602)
|.|++||+++ =+|+++|..|+++|.+ |.++++
T Consensus 7 k~vlItGa~g--~iG~~la~~l~~~G~~~V~~~~r 39 (260)
T PRK06198 7 KVALVTGGTQ--GLGAAIARAFAERGAAGLVICGR 39 (260)
T ss_pred cEEEEeCCCc--hHHHHHHHHHHHCCCCeEEEEcC
Confidence 5689999995 7999999999999999 777443
No 243
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=68.24 E-value=5.4 Score=41.73 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=27.6
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
+.|++||+++ =+|++++..|.++|.+|..+
T Consensus 7 ~~vlVTGatG--fiG~~l~~~L~~~G~~V~~~ 36 (340)
T PLN02653 7 KVALITGITG--QDGSYLTEFLLSKGYEVHGI 36 (340)
T ss_pred CEEEEECCCC--ccHHHHHHHHHHCCCEEEEE
Confidence 5799999996 89999999999999999874
No 244
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=68.19 E-value=3.8 Score=44.80 Aligned_cols=140 Identities=26% Similarity=0.348 Sum_probs=92.4
Q ss_pred ccccccchhccCCCCccEEEeeCCccchhhh-hhcCC--ccCceEEEeccccchhhHHHHHHHhhcCCcEEEeechhHHH
Q 007475 425 LNRNGEIYLERQPNKLKIKVVDGSSLAAAVV-VNSLP--KTTAHVLLRGTVTANKVANAVASSLCQMGIKVATICKDDYE 501 (602)
Q Consensus 425 ln~~g~l~~~~~p~~l~vrvv~g~tl~aa~v-l~~ip--~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~~~~ 501 (602)
|-++-.-|..--|.-+|+|-.|.-+.+--.| .|+|- +.|.+|=..|=. -.|+-.|.+|-+.|..|.+.|+++|+
T Consensus 11 l~~~~~t~~~~~p~~~~~~a~~~~~i~d~~~~~~s~~~~k~tl~IaIIGfG---nmGqflAetli~aGh~li~hsRsdys 87 (480)
T KOG2380|consen 11 LRRNSPTFLISPPRSLRIRAIDAAQIFDYMVSEDSIEQWKATLVIAIIGFG---NMGQFLAETLIDAGHGLICHSRSDYS 87 (480)
T ss_pred cccCCCceeccCcHHHHHHhhhhhhhhhcccCcchhhhcccceEEEEEecC---cHHHHHHHHHHhcCceeEecCcchhH
Confidence 4445555666667767888776433332222 23332 256677777776 68999999999999999999999999
Q ss_pred HHHhcCc-hhh--hccce--------ecc----------ccccccceE-EEEcCCCCHHHhhcCCCCCeeeecccCCCcC
Q 007475 502 KLKLRIP-VEA--QHNLV--------LST----------SYAAHKTKI-WLVGDDLTGKEQARAPKGTIFIPYTQIPPRK 559 (602)
Q Consensus 502 ~~~~~~~-~~~--~~~l~--------~~~----------~~~~~~~k~-w~vg~~~~~~eq~~a~~gt~f~~~~~~pp~~ 559 (602)
++++..- ..+ -++|+ .+| .|--|..|+ =|+||.++=+ +|+-+.|.+|
T Consensus 88 saa~~yg~~~ft~lhdlcerhpDvvLlctsilsiekilatypfqrlrrgtlfvdvlSvK----efek~lfekY------- 156 (480)
T KOG2380|consen 88 SAAEKYGSAKFTLLHDLCERHPDVVLLCTSILSIEKILATYPFQRLRRGTLFVDVLSVK----EFEKELFEKY------- 156 (480)
T ss_pred HHHHHhcccccccHHHHHhcCCCEEEEEehhhhHHHHHHhcCchhhccceeEeeeeecc----hhHHHHHHHh-------
Confidence 9998822 211 12232 222 111133344 6888888765 4555677777
Q ss_pred CCCCcccccCCcccCCCCC
Q 007475 560 LRKDCFYHSTPAMIIPPSL 578 (602)
Q Consensus 560 ~r~dc~y~~~~am~~p~~~ 578 (602)
+-|||-..+|-.|-=||++
T Consensus 157 LPkdfDIlctHpmfGPksv 175 (480)
T KOG2380|consen 157 LPKDFDILCTHPMFGPKSV 175 (480)
T ss_pred CccccceEeecCCcCCCcC
Confidence 4699999999999999954
No 245
>PRK06720 hypothetical protein; Provisional
Probab=68.06 E-value=8.5 Score=37.21 Aligned_cols=33 Identities=18% Similarity=0.121 Sum_probs=28.6
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
-+-+++||++ +=+|+++|..|+++|.+|.+.++
T Consensus 16 gk~~lVTGa~--~GIG~aia~~l~~~G~~V~l~~r 48 (169)
T PRK06720 16 GKVAIVTGGG--IGIGRNTALLLAKQGAKVIVTDI 48 (169)
T ss_pred CCEEEEecCC--ChHHHHHHHHHHHCCCEEEEEEC
Confidence 4678999999 47999999999999999998543
No 246
>PRK06484 short chain dehydrogenase; Validated
Probab=67.94 E-value=6.7 Score=43.55 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=32.3
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEee--chhHHHHHHhc
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATI--CKDDYEKLKLR 506 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~--~~~~~~~~~~~ 506 (602)
|-|++||++ +=+|+++|..|.++|.+|.+. +.++.+.+.++
T Consensus 6 k~~lITGas--~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~ 48 (520)
T PRK06484 6 RVVLVTGAA--GGIGRAACQRFARAGDQVVVADRNVERARERADS 48 (520)
T ss_pred eEEEEECCC--cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 678999999 489999999999999999884 34444444444
No 247
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=67.77 E-value=7 Score=41.41 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=27.1
Q ss_pred CceEEEeccc-cchhhHHHHHHHhhcCCcEEEe
Q 007475 463 TAHVLLRGTV-TANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 463 ~~~v~l~g~~-~~~k~~~aia~~lc~~~~~v~~ 494 (602)
-|-++.||+. + +=+|+|+|..|++.|.+|++
T Consensus 9 gk~alITGa~~s-~GIG~a~A~~la~~Ga~Vv~ 40 (303)
T PLN02730 9 GKRAFIAGVADD-NGYGWAIAKALAAAGAEILV 40 (303)
T ss_pred CCEEEEeCCCCC-CcHHHHHHHHHHHCCCEEEE
Confidence 4668999993 2 57999999999999999998
No 248
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=67.71 E-value=7.6 Score=36.00 Aligned_cols=43 Identities=28% Similarity=0.395 Sum_probs=33.3
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcE-EEeech--hHHHHHHhcC
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIK-VATICK--DDYEKLKLRI 507 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~-v~~~~~--~~~~~~~~~~ 507 (602)
.-+.|++.|+. ..||++|.+|+++|++ |.+.++ ++-+.+.++.
T Consensus 11 ~~~~vlviGaG---g~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~ 56 (135)
T PF01488_consen 11 KGKRVLVIGAG---GAARAVAAALAALGAKEITIVNRTPERAEALAEEF 56 (135)
T ss_dssp TTSEEEEESSS---HHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEECCH---HHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc
Confidence 46789999998 8899999999999999 777444 3555555444
No 249
>PRK11440 putative hydrolase; Provisional
Probab=67.58 E-value=33 Score=33.28 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=29.1
Q ss_pred ccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 461 KTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 461 ~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
.|+++|+++|-.+ +=-=.+.|..+.++|++|.+
T Consensus 119 ~gi~~lii~Gv~T-~~CV~~Ta~~A~~~gy~v~v 151 (188)
T PRK11440 119 RGIDTIVLCGIST-NIGVESTARNAWELGFNLVI 151 (188)
T ss_pred CCCCEEEEeeech-hHHHHHHHHHHHHCCCEEEE
Confidence 4889999999997 56668888999999999999
No 250
>PRK06123 short chain dehydrogenase; Provisional
Probab=67.52 E-value=7.7 Score=38.09 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=26.1
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+-|++||++ +=+|.++|..|+++|.+|++
T Consensus 3 ~~~lVtG~~--~~iG~~~a~~l~~~G~~vv~ 31 (248)
T PRK06123 3 KVMIITGAS--RGIGAATALLAAERGYAVCL 31 (248)
T ss_pred CEEEEECCC--chHHHHHHHHHHHCCCeEEE
Confidence 358999999 48999999999999999877
No 251
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=67.39 E-value=5.6 Score=40.39 Aligned_cols=29 Identities=17% Similarity=0.349 Sum_probs=26.4
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
.|++||+++ .+|++++..|.++|.+|...
T Consensus 1 kvlV~GatG--~iG~~l~~~l~~~g~~V~~~ 29 (328)
T TIGR01179 1 KILVTGGAG--YIGSHTVRQLLESGHEVVVL 29 (328)
T ss_pred CEEEeCCCC--HHHHHHHHHHHhCCCeEEEE
Confidence 379999996 99999999999999999874
No 252
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=67.15 E-value=50 Score=30.65 Aligned_cols=99 Identities=15% Similarity=0.184 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHHHHHhcCCeEEeeccccccccc-------------cccccchhccC-CCCccEEEeeCCccc------
Q 007475 392 REAINSLIEEAILEADAKGVKVISLGLLNQGEEL-------------NRNGEIYLERQ-PNKLKIKVVDGSSLA------ 451 (602)
Q Consensus 392 ~~~in~~ie~ai~~a~~~g~kv~sl~~lnk~~~l-------------n~~g~l~~~~~-p~~l~vrvv~g~tl~------ 451 (602)
.+.+=+-|.+.+..|.+.|..|+=.=-..+++.. +..|.-++..- |. -.-.+++-++--
T Consensus 22 ~~~~~~~i~~l~~~ar~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~l~~~-~~~~~i~K~~~saf~~t~ 100 (161)
T cd00431 22 ADELVPNINRLLAAARAAGIPVIFTRDWHPPDDPEFAELLWPPHCVKGTEGAELVPELAPL-PDDLVIEKTRYSAFYGTD 100 (161)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEeeecCCCcccccccCcccccCCCchhhcchhhCCC-CCCEEEecCCcCCccCCC
Confidence 3444445556666788899998865554443321 22233333321 21 112233322211
Q ss_pred hhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 452 AAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 452 aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
-+.+|.+. |.++|+|+|-.+ +=--.+.|+.+.++|++|.+
T Consensus 101 l~~~L~~~--~i~~vil~G~~t-~~CV~~T~~~a~~~G~~v~v 140 (161)
T cd00431 101 LDELLRER--GIDTLVVCGIAT-DICVLATARDALDLGYRVIV 140 (161)
T ss_pred HHHHHHHC--CCCEEEEEecCc-ChhHHHHHHHHHHCCCEEEE
Confidence 12233333 889999999997 56668899999999999999
No 253
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=67.12 E-value=6.3 Score=41.44 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=27.0
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCC--cEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMG--IKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~--~~v~~~~ 496 (602)
+.|++||+++ -+|+++|..|+++| .+|.+.+
T Consensus 5 k~vLVTGatG--~IG~~l~~~L~~~g~~~~V~~~~ 37 (324)
T TIGR03589 5 KSILITGGTG--SFGKAFISRLLENYNPKKIIIYS 37 (324)
T ss_pred CEEEEeCCCC--HHHHHHHHHHHHhCCCcEEEEEc
Confidence 5799999996 99999999999986 6888754
No 254
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=67.08 E-value=5.4 Score=40.55 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=24.9
Q ss_pred EEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 467 LLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 467 ~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|+|+..| -++|+++|.+|+++|.+|+.+++
T Consensus 19 ~itN~SS-G~iG~aLA~~L~~~G~~V~li~r 48 (229)
T PRK06732 19 GITNHST-GQLGKIIAETFLAAGHEVTLVTT 48 (229)
T ss_pred eecCccc-hHHHHHHHHHHHhCCCEEEEEEC
Confidence 6666655 49999999999999999998653
No 255
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=67.06 E-value=7.2 Score=43.30 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=29.4
Q ss_pred CccCceEEEeccccchhhHHH--HHHHhhcCCcEEEeec
Q 007475 460 PKTTAHVLLRGTVTANKVANA--VASSLCQMGIKVATIC 496 (602)
Q Consensus 460 p~~~~~v~l~g~~~~~k~~~a--ia~~lc~~~~~v~~~~ 496 (602)
.+|-|-|+.||++ +.+|.| ||.+| +.|..|+.++
T Consensus 38 ~~ggK~aLVTGaS--sGIGlA~~IA~al-~~GA~Vi~v~ 73 (398)
T PRK13656 38 ANGPKKVLVIGAS--SGYGLASRIAAAF-GAGADTLGVF 73 (398)
T ss_pred CCCCCEEEEECCC--chHhHHHHHHHHH-HcCCeEEEEe
Confidence 3577899999999 599999 99999 9999987744
No 256
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.95 E-value=35 Score=37.40 Aligned_cols=101 Identities=14% Similarity=0.106 Sum_probs=55.8
Q ss_pred hhhHHHHHHHHHHHHHHhcCCeEEeeccccccccccccccchhcc----CCCCccEEEeeCCccchhhhhhcCCccCceE
Q 007475 391 RREAINSLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLER----QPNKLKIKVVDGSSLAAAVVVNSLPKTTAHV 466 (602)
Q Consensus 391 ~~~~in~~ie~ai~~a~~~g~kv~sl~~lnk~~~ln~~g~l~~~~----~p~~l~vrvv~g~tl~aa~vl~~ip~~~~~v 466 (602)
.+.++..+++..-.|- +.|+.|-.+-.-.-..+-....-.|.-. +-+ =++-.++|...+... =-+-|..-+.|
T Consensus 137 akaal~gl~rsla~E~-~~gi~v~~i~~~~~~~~~~~~~~~~l~s~~~a~~~-g~~i~~~~~~~~~~~-~~~~~~~g~~v 213 (450)
T PRK08261 137 AQRALEGFTRSLGKEL-RRGATAQLVYVAPGAEAGLESTLRFFLSPRSAYVS-GQVVRVGAADAAPPA-DWDRPLAGKVA 213 (450)
T ss_pred HHHHHHHHHHHHHHHh-hcCCEEEEEecCCCCHHHHHHHHHHhcCCccCCcc-CcEEEecCCcccCCC-CcccCCCCCEE
Confidence 5667777777776777 6788874442222111111222223222 111 122233333221110 00112234679
Q ss_pred EEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 467 LLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 467 ~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
++||+++ =+|+++|..|+++|.+|++.+
T Consensus 214 lItGasg--gIG~~la~~l~~~Ga~vi~~~ 241 (450)
T PRK08261 214 LVTGAAR--GIGAAIAEVLARDGAHVVCLD 241 (450)
T ss_pred EEecCCC--HHHHHHHHHHHHCCCEEEEEe
Confidence 9999994 899999999999999999853
No 257
>PRK07201 short chain dehydrogenase; Provisional
Probab=66.88 E-value=7.5 Score=44.49 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=28.6
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|.|++||++ +-+|+++|..|+++|.+|++.++
T Consensus 372 k~vlItGas--~giG~~la~~l~~~G~~V~~~~r 403 (657)
T PRK07201 372 KVVLITGAS--SGIGRATAIKVAEAGATVFLVAR 403 (657)
T ss_pred CEEEEeCCC--CHHHHHHHHHHHHCCCEEEEEEC
Confidence 579999999 59999999999999999998543
No 258
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=66.76 E-value=6.4 Score=41.28 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=27.3
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
|.|++||+++ =+|++++..|.++|.+|..+
T Consensus 1 ~~vlVTGatG--fIG~~l~~~L~~~G~~V~~~ 30 (343)
T TIGR01472 1 KIALITGITG--QDGSYLAEFLLEKGYEVHGL 30 (343)
T ss_pred CeEEEEcCCC--cHHHHHHHHHHHCCCEEEEE
Confidence 4689999996 89999999999999999974
No 259
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=66.72 E-value=6.2 Score=41.64 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=28.3
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
+-|-++.||+.+.+=+|||+|..|.++|.+|++.
T Consensus 7 ~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~ 40 (299)
T PRK06300 7 TGKIAFIAGIGDDQGYGWGIAKALAEAGATILVG 40 (299)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEE
Confidence 3467899999521479999999999999999994
No 260
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=66.72 E-value=8.4 Score=40.20 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=28.5
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
-|-++.||++ +=+|+|||..|++.|-+|++.++
T Consensus 8 gkvalVTG~s--~GIG~aia~~la~~Ga~v~i~~r 40 (270)
T KOG0725|consen 8 GKVALVTGGS--SGIGKAIALLLAKAGAKVVITGR 40 (270)
T ss_pred CcEEEEECCC--ChHHHHHHHHHHHCCCEEEEEeC
Confidence 3567999999 48999999999999999999433
No 261
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=66.57 E-value=6.8 Score=40.41 Aligned_cols=43 Identities=28% Similarity=0.292 Sum_probs=32.3
Q ss_pred ccCceEEEeccccchhhHHHHHHHhhcCCcEEEeechh--HHHHHHhc
Q 007475 461 KTTAHVLLRGTVTANKVANAVASSLCQMGIKVATICKD--DYEKLKLR 506 (602)
Q Consensus 461 ~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~--~~~~~~~~ 506 (602)
..-+.|+++|+. -+|+|+|.+|++.|.+|.+.+++ +-+++.++
T Consensus 115 ~~~k~vliiGaG---g~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~ 159 (270)
T TIGR00507 115 RPNQRVLIIGAG---GAARAVALPLLKADCNVIIANRTVSKAEELAER 159 (270)
T ss_pred ccCCEEEEEcCc---HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 345789999996 79999999999999999885443 33444433
No 262
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=65.73 E-value=5.9 Score=41.52 Aligned_cols=29 Identities=10% Similarity=0.184 Sum_probs=25.7
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+.|++||+++ =||+++|..|+++|.+|+.
T Consensus 2 ~~vlVtGatG--fIG~~l~~~L~~~g~~~v~ 30 (355)
T PRK10217 2 RKILITGGAG--FIGSALVRYIINETSDAVV 30 (355)
T ss_pred cEEEEEcCCc--HHHHHHHHHHHHcCCCEEE
Confidence 5799999996 8999999999999987554
No 263
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=65.48 E-value=5.9 Score=42.57 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=16.5
Q ss_pred hhhhhcchhhhHHHHHHHHHHH
Q 007475 89 VDRERNWDDQIVFNGLIFYIVR 110 (602)
Q Consensus 89 vdrE~~~~N~iIl~~li~~l~~ 110 (602)
..||+.|.|.+++.++-....+
T Consensus 34 ~~~~~~w~nv~~~~~l~~~a~y 55 (321)
T KOG1600|consen 34 WKRELVWRNVVLFSALHIVALY 55 (321)
T ss_pred hhcchhhhhhHHHHHHHHHHHH
Confidence 5889999998887777554443
No 264
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=64.88 E-value=48 Score=35.50 Aligned_cols=144 Identities=17% Similarity=0.139 Sum_probs=82.7
Q ss_pred HhcCCeEEeeccccccccccccccchhccCCC-CccEEEeeCCccch-------hhhhhcC-CccCceEEEeccccchhh
Q 007475 407 DAKGVKVISLGLLNQGEELNRNGEIYLERQPN-KLKIKVVDGSSLAA-------AVVVNSL-PKTTAHVLLRGTVTANKV 477 (602)
Q Consensus 407 ~~~g~kv~sl~~lnk~~~ln~~g~l~~~~~p~-~l~vrvv~g~tl~a-------a~vl~~i-p~~~~~v~l~g~~~~~k~ 477 (602)
+..|+|+++.--=|..+.|..-..+++--.|+ ..-+=++||+.||+ |+-.+-+ +++.+.|-+.|+. ..
T Consensus 63 ~~~g~K~v~~~p~N~~~glp~~~g~i~L~d~~tG~p~ai~d~~~lT~~RTaA~salaa~~La~~~~~~lgiiG~G---~q 139 (325)
T TIGR02371 63 EMAGVKCVNVHPGNPDRHLPTVMALIILVSPETGFPIALMDGTYITDMRTGAAGGVAAKYLARKDSSVLGIIGAG---RQ 139 (325)
T ss_pred CeEEEEEEeecCCchhcCCCcceEEEEEeeCCCCCeEEEEeCcchhhHHHHHHHHHHHHHhCCCCCCEEEEECCC---HH
Confidence 45799999976555544443323333333443 46677899999974 3333555 7899999999999 89
Q ss_pred HHHHHHHhh--cCCcEEEe--echhHHHHHHhcCchhhhccceecccccc--ccceE-EEEcCCCCHH-HhhcCCCCCee
Q 007475 478 ANAVASSLC--QMGIKVAT--ICKDDYEKLKLRIPVEAQHNLVLSTSYAA--HKTKI-WLVGDDLTGK-EQARAPKGTIF 549 (602)
Q Consensus 478 ~~aia~~lc--~~~~~v~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~k~-w~vg~~~~~~-eq~~a~~gt~f 549 (602)
|++-+.+|+ ++.-+|.+ -++|+-+.+.++.. +..-...-+.+.++ +++-+ ...--.-+|- +-.|.++|+|.
T Consensus 140 A~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~-~~g~~v~~~~~~~eav~~aDiVitaT~s~~P~~~~~~l~~g~~v 218 (325)
T TIGR02371 140 AWTQLEALSRVFDLEEVSVYCRTPSTREKFALRAS-DYEVPVRAATDPREAVEGCDILVTTTPSRKPVVKADWVSEGTHI 218 (325)
T ss_pred HHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH-hhCCcEEEeCCHHHHhccCCEEEEecCCCCcEecHHHcCCCCEE
Confidence 999777766 55566666 44455554444422 11101112234433 44433 3222111111 23467899998
Q ss_pred eeccc
Q 007475 550 IPYTQ 554 (602)
Q Consensus 550 ~~~~~ 554 (602)
.....
T Consensus 219 ~~vGs 223 (325)
T TIGR02371 219 NAIGA 223 (325)
T ss_pred EecCC
Confidence 87764
No 265
>PRK06141 ornithine cyclodeaminase; Validated
Probab=64.73 E-value=21 Score=37.86 Aligned_cols=97 Identities=23% Similarity=0.225 Sum_probs=64.3
Q ss_pred HhcCCeEEeeccccccccccc-cccchhccCCCCccEEEeeCCccch-------hhhhhcC-CccCceEEEeccccchhh
Q 007475 407 DAKGVKVISLGLLNQGEELNR-NGEIYLERQPNKLKIKVVDGSSLAA-------AVVVNSL-PKTTAHVLLRGTVTANKV 477 (602)
Q Consensus 407 ~~~g~kv~sl~~lnk~~~ln~-~g~l~~~~~p~~l~vrvv~g~tl~a-------a~vl~~i-p~~~~~v~l~g~~~~~k~ 477 (602)
+-.|+|+++.--=|....|-. .|.+.+.---...-.=++||+.||+ |+..+-+ +++.+.|.+.|+. ..
T Consensus 60 ~~~g~K~~~~~p~N~~~glp~~~g~v~l~d~~tG~p~ai~d~~~lT~~RTaa~sala~~~La~~~~~~v~iiG~G---~~ 136 (314)
T PRK06141 60 RYIGVKAVTVFPGNPARGLPGLHSTYLLFDGRTGEPLALVDGTELTARRTAAASALAASYLARKDASRLLVVGTG---RL 136 (314)
T ss_pred CeeEEEEEeecCCCCcCCCCceEEEEEEEECCCCCEEEEEcCcchhcchhHHHHHHHHHHhCCCCCceEEEECCc---HH
Confidence 346999999776665444422 3555444333346677899999974 3333334 6789999999987 99
Q ss_pred HHHHHHHhhc-CC-cEEEeech--hHHHHHHhc
Q 007475 478 ANAVASSLCQ-MG-IKVATICK--DDYEKLKLR 506 (602)
Q Consensus 478 ~~aia~~lc~-~~-~~v~~~~~--~~~~~~~~~ 506 (602)
|++++.++|. ++ -+|.+.++ ++-+++.++
T Consensus 137 a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~ 169 (314)
T PRK06141 137 ASLLALAHASVRPIKQVRVWGRDPAKAEALAAE 169 (314)
T ss_pred HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHH
Confidence 9999998885 55 56777433 444444444
No 266
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=64.70 E-value=6.4 Score=41.53 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=26.1
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCc-EEEeech
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGI-KVATICK 497 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~-~v~~~~~ 497 (602)
-|.|++.|+.++ |||||.+|++.|+ +|.+.++
T Consensus 124 ~k~vlvlGaGGa---arAi~~~l~~~g~~~i~i~nR 156 (288)
T PRK12749 124 GKTMVLLGAGGA---STAIGAQGAIEGLKEIKLFNR 156 (288)
T ss_pred CCEEEEECCcHH---HHHHHHHHHHCCCCEEEEEeC
Confidence 368999999863 8999999999998 6666544
No 267
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=64.60 E-value=15 Score=41.98 Aligned_cols=40 Identities=25% Similarity=0.404 Sum_probs=32.8
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEee--chhHHHHHHh
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATI--CKDDYEKLKL 505 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~--~~~~~~~~~~ 505 (602)
.+.|..+|.. ++|+.+|..|.++|++|++. ++|+.+++++
T Consensus 417 ~~hiiI~G~G---~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~ 458 (558)
T PRK10669 417 CNHALLVGYG---RVGSLLGEKLLAAGIPLVVIETSRTRVDELRE 458 (558)
T ss_pred CCCEEEECCC---hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Confidence 4789999999 99999999999999999994 4445555544
No 268
>PLN00016 RNA-binding protein; Provisional
Probab=64.48 E-value=6.7 Score=42.05 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=30.9
Q ss_pred ccCceEEEe----ccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 461 KTTAHVLLR----GTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 461 ~~~~~v~l~----g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
.+.+.|++| |+++ .+|+.++..|.++|.+|..+++.
T Consensus 50 ~~~~~VLVt~~~~GatG--~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHA--FIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cccceEEEEeccCCCce--eEhHHHHHHHHHCCCEEEEEecC
Confidence 345679999 9997 99999999999999999985443
No 269
>PLN02206 UDP-glucuronate decarboxylase
Probab=64.44 E-value=8 Score=43.05 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=28.3
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
+.||+||+++ =||+.++.+|.++|.+|..++
T Consensus 120 ~kILVTGatG--fIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 120 LRVVVTGGAG--FVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred CEEEEECccc--HHHHHHHHHHHHCcCEEEEEe
Confidence 5799999997 999999999999999999853
No 270
>PLN02572 UDP-sulfoquinovose synthase
Probab=64.27 E-value=7.1 Score=43.34 Aligned_cols=30 Identities=27% Similarity=0.267 Sum_probs=27.8
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
+.|++||+++ =||+++|.+|.++|.+|..+
T Consensus 48 k~VLVTGatG--fIGs~Lv~~L~~~G~~V~~~ 77 (442)
T PLN02572 48 KKVMVIGGDG--YCGWATALHLSKRGYEVAIV 77 (442)
T ss_pred CEEEEECCCc--HHHHHHHHHHHHCCCeEEEE
Confidence 5799999996 99999999999999999984
No 271
>PRK07791 short chain dehydrogenase; Provisional
Probab=64.19 E-value=10 Score=38.98 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=27.4
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
|-+++||++ +=+|++||..|+++|.+|++.
T Consensus 7 k~~lITGas--~GIG~aia~~la~~G~~vii~ 36 (286)
T PRK07791 7 RVVIVTGAG--GGIGRAHALAFAAEGARVVVN 36 (286)
T ss_pred CEEEEECCC--chHHHHHHHHHHHCCCEEEEe
Confidence 578999999 489999999999999999884
No 272
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=63.90 E-value=8.8 Score=42.05 Aligned_cols=38 Identities=26% Similarity=0.272 Sum_probs=31.3
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEeechhHHHHH
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATICKDDYEKL 503 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~~~~~~ 503 (602)
-|.|.++|+. ++|.++|.+|.++|.+|.+.+.++.+.+
T Consensus 5 ~k~v~iiG~g---~~G~~~A~~l~~~G~~V~~~d~~~~~~~ 42 (450)
T PRK14106 5 GKKVLVVGAG---VSGLALAKFLKKLGAKVILTDEKEEDQL 42 (450)
T ss_pred CCEEEEECCC---HHHHHHHHHHHHCCCEEEEEeCCchHHH
Confidence 3679999988 7999999999999999999665544433
No 273
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=63.70 E-value=8 Score=40.97 Aligned_cols=60 Identities=28% Similarity=0.357 Sum_probs=42.4
Q ss_pred eCCccchhhhhhcCCccC--ceEEEeccccchhhHHHHHHHhhcCCc-EEEeec--hhHHHHHHhcCc
Q 007475 446 DGSSLAAAVVVNSLPKTT--AHVLLRGTVTANKVANAVASSLCQMGI-KVATIC--KDDYEKLKLRIP 508 (602)
Q Consensus 446 ~g~tl~aa~vl~~ip~~~--~~v~l~g~~~~~k~~~aia~~lc~~~~-~v~~~~--~~~~~~~~~~~~ 508 (602)
||-.+..+-.=+.+|.++ ++|++.|+.+| ||||+.+|.+.|+ +|.+.+ .++.+.+.+..+
T Consensus 107 D~~G~~~~L~~~~~~~~~~~~~vlilGAGGA---arAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~ 171 (283)
T COG0169 107 DGIGFLRALKEFGLPVDVTGKRVLILGAGGA---ARAVAFALAEAGAKRITVVNRTRERAEELADLFG 171 (283)
T ss_pred CHHHHHHHHHhcCCCcccCCCEEEEECCcHH---HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhh
Confidence 444444444444555554 88999999975 8999999999996 577733 467777776644
No 274
>PRK05599 hypothetical protein; Provisional
Probab=63.49 E-value=11 Score=37.69 Aligned_cols=29 Identities=28% Similarity=0.555 Sum_probs=25.2
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
-|++||++ +=+|+++|..|++ |.+|++.+
T Consensus 2 ~vlItGas--~GIG~aia~~l~~-g~~Vil~~ 30 (246)
T PRK05599 2 SILILGGT--SDIAGEIATLLCH-GEDVVLAA 30 (246)
T ss_pred eEEEEeCc--cHHHHHHHHHHhC-CCEEEEEe
Confidence 47999999 4899999999995 99999954
No 275
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=63.40 E-value=9.8 Score=38.03 Aligned_cols=31 Identities=16% Similarity=0.271 Sum_probs=26.5
Q ss_pred eEEEeccccchhhHHHHHHHhhc----CCcEEEeech
Q 007475 465 HVLLRGTVTANKVANAVASSLCQ----MGIKVATICK 497 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~----~~~~v~~~~~ 497 (602)
-|++||++ +=+|+++|..|++ .|.+|.+.++
T Consensus 2 ~vlItGas--~GIG~~~a~~la~~~~~~g~~V~~~~r 36 (256)
T TIGR01500 2 VCLVTGAS--RGFGRTIAQELAKCLKSPGSVLVLSAR 36 (256)
T ss_pred EEEEecCC--CchHHHHHHHHHHhhccCCcEEEEEEc
Confidence 37899999 5899999999997 7999988544
No 276
>PRK07775 short chain dehydrogenase; Provisional
Probab=63.31 E-value=11 Score=38.14 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=27.4
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
+-|++||+++ =+|+++|..|.++|.+|.+.+
T Consensus 11 ~~vlVtGa~g--~iG~~la~~L~~~G~~V~~~~ 41 (274)
T PRK07775 11 RPALVAGASS--GIGAATAIELAAAGFPVALGA 41 (274)
T ss_pred CEEEEECCCc--hHHHHHHHHHHHCCCEEEEEe
Confidence 5689999994 899999999999999998743
No 277
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=63.26 E-value=8.2 Score=34.79 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=25.5
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCc-EEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGI-KVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~-~v~~~~ 496 (602)
+.|++||+++ =+|+++|..|+++|. .|++.+
T Consensus 1 ~~~li~Ga~~--~iG~~~~~~l~~~g~~~v~~~~ 32 (180)
T smart00822 1 GTYLITGGLG--GLGLELARWLAERGARHLVLLS 32 (180)
T ss_pred CEEEEEcCCC--hHHHHHHHHHHHhhCCeEEEEe
Confidence 4589999995 899999999999997 566533
No 278
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=62.84 E-value=56 Score=30.70 Aligned_cols=102 Identities=22% Similarity=0.207 Sum_probs=62.5
Q ss_pred chhhhHHHHHHHHHHHHHHhcCCeEEeeccccc---------------cccccccccchhc-cCCCCccEEEeeCC---c
Q 007475 389 PWRREAINSLIEEAILEADAKGVKVISLGLLNQ---------------GEELNRNGEIYLE-RQPNKLKIKVVDGS---S 449 (602)
Q Consensus 389 ~~~~~~in~~ie~ai~~a~~~g~kv~sl~~lnk---------------~~~ln~~g~l~~~-~~p~~l~vrvv~g~---t 449 (602)
+.+.+.+-+-|.+.+..|.+.|+.|+-.--.++ .-.....|.-++. -.|. ..-.|++=+ .
T Consensus 19 ~~~~~~~i~~i~~l~~~~r~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~-~~~~vi~K~~~sa 97 (174)
T PF00857_consen 19 PPNAEAIIPNINRLLDAARAAGVPVIHTRDIHDSPHWSGPFEPKPWPPHCIPGSPGAELVPELAPQ-PGDPVIEKNRYSA 97 (174)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTEEEEEEEESBSTTTTTTSGGHSCHTSCSBTTSGGGSBHGGGHCH-TTSEEEEESSSST
T ss_pred ccCHHHHHHHHHHHHHHHHHhCCCeEEEEeeecccccccccccccccccccCCCCccceeeEeecc-cccceEEeecccc
Confidence 445566667778888888999999988777666 1111122222222 2222 123333321 1
Q ss_pred cc---hhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 450 LA---AAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 450 l~---aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
.. -...|++ .|+++|+++|-.+ +=-=.+.|..+.++|++|.+
T Consensus 98 f~~t~L~~~L~~--~gi~~vil~G~~t-~~CV~~Ta~~a~~~g~~v~v 142 (174)
T PF00857_consen 98 FFGTDLDEILRK--RGIDTVILCGVAT-DVCVLATARDAFDRGYRVIV 142 (174)
T ss_dssp TTTSSHHHHHHH--TTESEEEEEEEST-TTHHHHHHHHHHHTT-EEEE
T ss_pred cccccccccccc--cccceEEEccccc-CcEEehhHHHHHHCCCEEEE
Confidence 10 1223444 6889999999987 55558999999999999999
No 279
>PLN02778 3,5-epimerase/4-reductase
Probab=62.58 E-value=9.9 Score=39.63 Aligned_cols=35 Identities=14% Similarity=0.158 Sum_probs=29.5
Q ss_pred cCCc-cCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 458 SLPK-TTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 458 ~ip~-~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+-|. .++.|++||+++ =+|+.++.+|.++|.+|..
T Consensus 3 ~~~~~~~~kiLVtG~tG--fiG~~l~~~L~~~g~~V~~ 38 (298)
T PLN02778 3 GTAGSATLKFLIYGKTG--WIGGLLGKLCQEQGIDFHY 38 (298)
T ss_pred CCCCCCCCeEEEECCCC--HHHHHHHHHHHhCCCEEEE
Confidence 3344 345799999997 9999999999999999975
No 280
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=62.47 E-value=7.9 Score=40.12 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=24.8
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
.|++||+++ -||++++.+|+++| +|..+
T Consensus 2 ~iLVtG~~G--fiGs~l~~~L~~~g-~V~~~ 29 (299)
T PRK09987 2 NILLFGKTG--QVGWELQRALAPLG-NLIAL 29 (299)
T ss_pred eEEEECCCC--HHHHHHHHHhhccC-CEEEe
Confidence 589999997 99999999999999 77653
No 281
>PRK06526 transposase; Provisional
Probab=62.39 E-value=8.7 Score=39.81 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=27.4
Q ss_pred eEEEeccccchh--hHHHHHHHhhcCCcEEEeech
Q 007475 465 HVLLRGTVTANK--VANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 465 ~v~l~g~~~~~k--~~~aia~~lc~~~~~v~~~~~ 497 (602)
.|+++|.+|.-| ++.||+..+|++|.+|...+.
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence 478988877666 999999999999999987433
No 282
>PLN02427 UDP-apiose/xylose synthase
Probab=62.17 E-value=10 Score=40.54 Aligned_cols=36 Identities=14% Similarity=0.121 Sum_probs=30.0
Q ss_pred CCccCceEEEeccccchhhHHHHHHHhhcC-CcEEEeec
Q 007475 459 LPKTTAHVLLRGTVTANKVANAVASSLCQM-GIKVATIC 496 (602)
Q Consensus 459 ip~~~~~v~l~g~~~~~k~~~aia~~lc~~-~~~v~~~~ 496 (602)
-|-..+.|++||+++ =||+.++..|.++ |.+|..++
T Consensus 10 ~~~~~~~VlVTGgtG--fIGs~lv~~L~~~~g~~V~~l~ 46 (386)
T PLN02427 10 KPIKPLTICMIGAGG--FIGSHLCEKLMTETPHKVLALD 46 (386)
T ss_pred CcccCcEEEEECCcc--hHHHHHHHHHHhcCCCEEEEEe
Confidence 344556799999997 9999999999998 58888754
No 283
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=61.83 E-value=9.6 Score=37.73 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=19.2
Q ss_pred hhhHHHHHHHhhcCCcEEEee
Q 007475 475 NKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 475 ~k~~~aia~~lc~~~~~v~~~ 495 (602)
+=+|+|||..|+++|.+|+++
T Consensus 6 ~GiG~aia~~l~~~Ga~V~~~ 26 (241)
T PF13561_consen 6 SGIGRAIARALAEEGANVILT 26 (241)
T ss_dssp SHHHHHHHHHHHHTTEEEEEE
T ss_pred CChHHHHHHHHHHCCCEEEEE
Confidence 469999999999999999993
No 284
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=61.78 E-value=15 Score=32.26 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=29.1
Q ss_pred EEEeccccchhhHHHHHHHhhcCCcEEEe--echhHHHHHHhc
Q 007475 466 VLLRGTVTANKVANAVASSLCQMGIKVAT--ICKDDYEKLKLR 506 (602)
Q Consensus 466 v~l~g~~~~~k~~~aia~~lc~~~~~v~~--~~~~~~~~~~~~ 506 (602)
|++.|.. .+|+.||..|-+++.+|++ .++++.++++.+
T Consensus 1 vvI~G~g---~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~ 40 (116)
T PF02254_consen 1 VVIIGYG---RIGREIAEQLKEGGIDVVVIDRDPERVEELREE 40 (116)
T ss_dssp EEEES-S---HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT
T ss_pred eEEEcCC---HHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc
Confidence 5678887 8999999999999988888 444556665554
No 285
>PTZ00381 aldehyde dehydrogenase family protein; Provisional
Probab=61.31 E-value=11 Score=42.53 Aligned_cols=48 Identities=15% Similarity=0.308 Sum_probs=35.5
Q ss_pred cEEEeeCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 441 KIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 441 ~vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
-+.||+|+.-+++..++ -| .+.|++||++ ++|+.|+.+..++..+|++
T Consensus 167 ~v~vv~g~~~~~~~l~~-~~--~d~i~FTGS~---~vG~~V~~~aa~~l~pv~l 214 (493)
T PTZ00381 167 YVRVIEGGVEVTTELLK-EP--FDHIFFTGSP---RVGKLVMQAAAENLTPCTL 214 (493)
T ss_pred EEEEecCCHHHHHHHHh-CC--CCEEEEECCH---HHHHHHHHHHHhcCCcEEE
Confidence 35667775444444454 24 7889999998 8999999998888888865
No 286
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=61.02 E-value=11 Score=44.25 Aligned_cols=106 Identities=12% Similarity=0.120 Sum_probs=61.6
Q ss_pred cccceeEEeeccCc-eeccchhhhHHHHHHHH----HHHHHHhcCCeEEeeccccccccccccccchhccCCCCccEEEe
Q 007475 371 KLKLQTWVVPRYIV-QYNLPWRREAINSLIEE----AILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIKVV 445 (602)
Q Consensus 371 ~~~~~tw~ipr~~~-~y~~~~~~~~in~~ie~----ai~~a~~~g~kv~sl~~lnk~~~ln~~g~l~~~~~p~~l~vrvv 445 (602)
+-+-..-+||--|. -+.-..+...|+..|-. +|++|+..| +.-.|.+.|...- -|.+....+|+ |..
T Consensus 336 ~~~p~~~~~~~~g~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~f~~---eyw~~e~~kl~-~~~ 407 (676)
T TIGR02632 336 DPNPRVLLIPGVGMISFGKDKETARVAREFYVNAINVMRGAEAVS----EYVSLPEQEAFDI---EYWPLEEAKLR-RMP 407 (676)
T ss_pred CCCCeEEEEcCcceEEecCCHHHhhhhHHHHHHHHHHHhhhhccc----ceecCchhhccch---hhhhhhHHhhc-cCC
Confidence 33447788888887 55555566667765543 345555443 3334444444433 13311111111 000
Q ss_pred eCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 446 DGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 446 ~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
+..+-.-|-|++||+++ -+|+++|..|+++|.+|++.++
T Consensus 408 -----------~~~~l~gkvvLVTGasg--gIG~aiA~~La~~Ga~Vvi~~r 446 (676)
T TIGR02632 408 -----------KEKTLARRVAFVTGGAG--GIGRETARRLAAEGAHVVLADL 446 (676)
T ss_pred -----------CCcCCCCCEEEEeCCCc--HHHHHHHHHHHhCCCEEEEEeC
Confidence 01111346799999994 9999999999999999998443
No 287
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=60.85 E-value=14 Score=36.18 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=30.7
Q ss_pred ceEEEeccccch--hhHHHHHHHhhcCCcEEEe-echhHHHHHHhc
Q 007475 464 AHVLLRGTVTAN--KVANAVASSLCQMGIKVAT-ICKDDYEKLKLR 506 (602)
Q Consensus 464 ~~v~l~g~~~~~--k~~~aia~~lc~~~~~v~~-~~~~~~~~~~~~ 506 (602)
+-++|.|.++.- -++.|||..+|++|.+|.. ...+-++.|+..
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~ 93 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQS 93 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCC
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccccc
Confidence 347888776543 4999999999999999998 455666777754
No 288
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=60.17 E-value=9.3 Score=40.61 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=30.2
Q ss_pred ceEEEeccccchh--hHHHHHHHhhcCCcEEEeechhHHHHH
Q 007475 464 AHVLLRGTVTANK--VANAVASSLCQMGIKVATICKDDYEKL 503 (602)
Q Consensus 464 ~~v~l~g~~~~~k--~~~aia~~lc~~~~~v~~~~~~~~~~~ 503 (602)
+=+|++|+.+.-| ++-|+|.++.++|-||++.|.|--.+|
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L 43 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSL 43 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccH
Confidence 4578887765445 888899999999999999888855443
No 289
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=59.30 E-value=31 Score=34.28 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=16.8
Q ss_pred CcccccCCchhHHHhhhC-CCCCCCC
Q 007475 238 PLKFLMYTPSYHSLHHTQ-FRTNYSL 262 (602)
Q Consensus 238 ~Lk~li~Tp~~H~lHH~~-~~~NYGl 262 (602)
++.-+..+-.+|+.||.. .+.+.|.
T Consensus 128 ~~~llt~GEg~HNnHHafP~~ar~g~ 153 (178)
T cd03505 128 WVALLTFGEGWHNNHHAFPGDARNGL 153 (178)
T ss_pred HHHHHHccccccccccCCcchhhhCC
Confidence 344344567899999998 4556663
No 290
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=58.55 E-value=16 Score=35.87 Aligned_cols=86 Identities=19% Similarity=0.255 Sum_probs=51.2
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEeechhHHHHHHhcCchhhhccceecccccc--ccceEE--EEcC--CC
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVATICKDDYEKLKLRIPVEAQHNLVLSTSYAA--HKTKIW--LVGD--DL 535 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~k~w--~vg~--~~ 535 (602)
.-|+|...|-. |+|+.+|.+|-..|.+|.+...|-...+|... . .+ ++.+..+ ...-+. --|. -+
T Consensus 22 ~Gk~vvV~GYG---~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~-d---Gf--~v~~~~~a~~~adi~vtaTG~~~vi 92 (162)
T PF00670_consen 22 AGKRVVVIGYG---KVGKGIARALRGLGARVTVTEIDPIRALQAAM-D---GF--EVMTLEEALRDADIFVTATGNKDVI 92 (162)
T ss_dssp TTSEEEEE--S---HHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHH-T---T---EEE-HHHHTTT-SEEEE-SSSSSSB
T ss_pred CCCEEEEeCCC---cccHHHHHHHhhCCCEEEEEECChHHHHHhhh-c---Cc--EecCHHHHHhhCCEEEECCCCcccc
Confidence 45788999998 99999999999999999997666655554431 1 11 2223222 333343 3453 36
Q ss_pred CHHHhhcCCCCCeeeecccCC
Q 007475 536 TGKEQARAPKGTIFIPYTQIP 556 (602)
Q Consensus 536 ~~~eq~~a~~gt~f~~~~~~p 556 (602)
+.++=...+.|+.-.--.+|+
T Consensus 93 ~~e~~~~mkdgail~n~Gh~d 113 (162)
T PF00670_consen 93 TGEHFRQMKDGAILANAGHFD 113 (162)
T ss_dssp -HHHHHHS-TTEEEEESSSST
T ss_pred CHHHHHHhcCCeEEeccCcCc
Confidence 888888888888776655544
No 291
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=58.30 E-value=12 Score=39.07 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=31.6
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCc-EEEeech--hHHHHHHhc
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGI-KVATICK--DDYEKLKLR 506 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~-~v~~~~~--~~~~~~~~~ 506 (602)
-+.|++.|+. -.|||||.+|.+.|+ +|.+.++ ++-++|.++
T Consensus 125 ~k~vlvlGaG---Gaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~ 168 (282)
T TIGR01809 125 GFRGLVIGAG---GTSRAAVYALASLGVTDITVINRNPDKLSRLVDL 168 (282)
T ss_pred CceEEEEcCc---HHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Confidence 4689999998 679999999999998 5777544 455666543
No 292
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=58.18 E-value=1.1e+02 Score=32.86 Aligned_cols=25 Identities=24% Similarity=0.362 Sum_probs=17.8
Q ss_pred CcccccCCchhHHHhhhCCCCCCCC
Q 007475 238 PLKFLMYTPSYHSLHHTQFRTNYSL 262 (602)
Q Consensus 238 ~Lk~li~Tp~~H~lHH~~~~~NYGl 262 (602)
+.+++...-.+|.-||.+...-|-.
T Consensus 255 ~~n~l~~nl~rHsdHH~~p~~~y~~ 279 (314)
T cd03512 255 VSNLLLFNLQRHSDHHAHPTRPYQA 279 (314)
T ss_pred HHHHHHHhcchhhhhccCCCCchhh
Confidence 3445555677999999987777654
No 293
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=58.09 E-value=19 Score=33.19 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=26.5
Q ss_pred ccCceEEEeccccchhhHHHHHHHhhcCC-cEEEee
Q 007475 461 KTTAHVLLRGTVTANKVANAVASSLCQMG-IKVATI 495 (602)
Q Consensus 461 ~~~~~v~l~g~~~~~k~~~aia~~lc~~~-~~v~~~ 495 (602)
...+.|.++|.. .+|+++|.+|++.| .+|.+.
T Consensus 17 ~~~~~i~iiG~G---~~g~~~a~~l~~~g~~~v~v~ 49 (155)
T cd01065 17 LKGKKVLILGAG---GAARAVAYALAELGAAKIVIV 49 (155)
T ss_pred CCCCEEEEECCc---HHHHHHHHHHHHCCCCEEEEE
Confidence 445789999985 89999999999986 677773
No 294
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=57.90 E-value=40 Score=32.93 Aligned_cols=16 Identities=38% Similarity=0.503 Sum_probs=12.1
Q ss_pred hhhhhcccCCccCcCC
Q 007475 154 YLYSRYHSHHHSSVVT 169 (602)
Q Consensus 154 ~LY~riHkvHHss~~p 169 (602)
..|+..|-.||...+.
T Consensus 71 ~~~r~~H~~HH~~~~~ 86 (175)
T cd03510 71 AAYRRSHLKHHRHLGT 86 (175)
T ss_pred HHHHHHHHHHhCccCC
Confidence 3577889999998653
No 295
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=57.63 E-value=11 Score=39.10 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=28.2
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
.|++||++| =||++++.+|.++|+.|.-.++.
T Consensus 2 riLI~GasG--~lG~~l~~~l~~~~~~v~~~~r~ 33 (286)
T PF04321_consen 2 RILITGASG--FLGSALARALKERGYEVIATSRS 33 (286)
T ss_dssp EEEEETTTS--HHHHHHHHHHTTTSEEEEEESTT
T ss_pred EEEEECCCC--HHHHHHHHHHhhCCCEEEEeCch
Confidence 589999996 99999999999999999886444
No 296
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.39 E-value=21 Score=37.76 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=34.3
Q ss_pred chhhhhh-----cCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 451 AAAVVVN-----SLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 451 ~aa~vl~-----~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
|+..++. .++-.-|.|.+.|+.+ =+|++||..|.++|.+|.+.+
T Consensus 142 T~~gii~~L~~~~i~l~Gk~vvViG~gg--~vGkpia~~L~~~gatVtv~~ 190 (283)
T PRK14192 142 TPAGIMRLLKAYNIELAGKHAVVVGRSA--ILGKPMAMMLLNANATVTICH 190 (283)
T ss_pred cHHHHHHHHHHcCCCCCCCEEEEECCcH--HHHHHHHHHHHhCCCEEEEEe
Confidence 4455554 3455667999999993 599999999999999999843
No 297
>cd07099 ALDH_DDALDH Methylomonas sp. 4,4'-diapolycopene-dialdehyde dehydrogenase-like. The 4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH) involved in C30 carotenoid synthesis in Methylomonas sp. strain 16a and other similar sequences are present in this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde into 4,4'-diapolycopene-diacid.
Probab=57.03 E-value=17 Score=40.12 Aligned_cols=47 Identities=21% Similarity=0.351 Sum_probs=33.1
Q ss_pred EEEeeCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 442 IKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 442 vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+.+|.|..-++..+++. .++-|.+||++ ++|++|+....++..+|.+
T Consensus 179 ~~vv~g~~~~~~~l~~~---~vd~V~ftGs~---~~g~~i~~~aa~~~~~~~l 225 (453)
T cd07099 179 LQVVTGDGATGAALIDA---GVDKVAFTGSV---ATGRKVMAAAAERLIPVVL 225 (453)
T ss_pred EEEEeCCchHHHHHhcC---CCCEEEEECCH---HHHHHHHHHHHhcCCeEEE
Confidence 56676655444444442 37888888888 8888888888887777765
No 298
>PRK09620 hypothetical protein; Provisional
Probab=56.88 E-value=14 Score=37.85 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=18.8
Q ss_pred hhHHHHHHHhhcCCcEEEee
Q 007475 476 KVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 476 k~~~aia~~lc~~~~~v~~~ 495 (602)
|+|++||.+|.++|.+|+++
T Consensus 30 fiGs~LA~~L~~~Ga~V~li 49 (229)
T PRK09620 30 TIGRIIAEELISKGAHVIYL 49 (229)
T ss_pred HHHHHHHHHHHHCCCeEEEE
Confidence 99999999999999999873
No 299
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=56.57 E-value=8.2 Score=35.31 Aligned_cols=33 Identities=30% Similarity=0.539 Sum_probs=27.9
Q ss_pred eccccchhhHHHHHHHhhcCCcEEEeechhHHHHH
Q 007475 469 RGTVTANKVANAVASSLCQMGIKVATICKDDYEKL 503 (602)
Q Consensus 469 ~g~~~~~k~~~aia~~lc~~~~~v~~~~~~~~~~~ 503 (602)
||+| -++|++||..|.++|++|.+.+-++++..
T Consensus 7 tG~t--e~~A~~ia~~l~~~g~~~~~~~~~~~~~~ 39 (143)
T PF00258_consen 7 TGNT--EKMAEAIAEGLRERGVEVRVVDLDDFDDS 39 (143)
T ss_dssp SSHH--HHHHHHHHHHHHHTTSEEEEEEGGGSCHH
T ss_pred chhH--HHHHHHHHHHHHHcCCceeeechhhhhhh
Confidence 6888 59999999999999999988676766643
No 300
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=56.50 E-value=51 Score=28.79 Aligned_cols=62 Identities=23% Similarity=0.276 Sum_probs=45.7
Q ss_pred cceEEEeecccCcccceeEEeeccCceeccchhhhHHHHHHHHHHHHHHhcCCeEEeeccccc
Q 007475 359 GRTFVSESNTLDKLKLQTWVVPRYIVQYNLPWRREAINSLIEEAILEADAKGVKVISLGLLNQ 421 (602)
Q Consensus 359 ~~~f~~~~~~~~~~~~~tw~ipr~~~~y~~~~~~~~in~~ie~ai~~a~~~g~kv~sl~~lnk 421 (602)
|+..+.+.+.+.-...=.-+.|+|.-+ .-+.+.+.+.+-+++++..|+++++|.|.+=++.-
T Consensus 43 G~~~~t~~~~l~~~~Iih~v~P~~~~~-~~~~~~~~L~~~~~~~l~~a~~~~~~sIa~P~ig~ 104 (118)
T PF01661_consen 43 GEVIVTPGGNLPCKYIIHAVGPTYNSP-GEKNSYEALESAYRNALQKAEENGIKSIAFPAIGT 104 (118)
T ss_dssp TSEEEEEETTSSSSEEEEEEEEETTTS-TSTTHHHHHHHHHHHHHHHHHHTTTSEEEEESTTS
T ss_pred CCeeeecCCCccccceEEEecceeccc-cccccHHHHHHHHHHHHHHHHHcCCcccccCcccC
Confidence 456667776665222233355887654 56678899999999999999999999999877653
No 301
>PRK06046 alanine dehydrogenase; Validated
Probab=56.38 E-value=32 Score=36.74 Aligned_cols=96 Identities=24% Similarity=0.293 Sum_probs=63.3
Q ss_pred HhcCCeEEeecccccccccccc-ccchhccCCC-CccEEEeeCCccch-------hhhhhcC-CccCceEEEeccccchh
Q 007475 407 DAKGVKVISLGLLNQGEELNRN-GEIYLERQPN-KLKIKVVDGSSLAA-------AVVVNSL-PKTTAHVLLRGTVTANK 476 (602)
Q Consensus 407 ~~~g~kv~sl~~lnk~~~ln~~-g~l~~~~~p~-~l~vrvv~g~tl~a-------a~vl~~i-p~~~~~v~l~g~~~~~k 476 (602)
+..|+|+++..-=|-++.|... |...+ -.|+ ..-.=++||+.||+ |+-..-+ |++.+.|.+.|+. .
T Consensus 64 ~~~g~K~~~~~p~N~~~glp~~~g~i~L-~d~~tG~p~aild~~~lT~~RTaA~sala~~~La~~~~~~vgiiG~G---~ 139 (326)
T PRK06046 64 DIAGVKIVNVHPGNPDRGLPTVMAVIIL-NSPETGFPLAIMDGTYLTDMRTGAAGGVAAKYLARKDSKVVGIIGAG---N 139 (326)
T ss_pred CeEEEEEEeeCCCCcccCCCceeEEEEE-EeCCCCceEEEEcCccHHHHHHHHHHHHHHHHhCCCCCCEEEEECCc---H
Confidence 4579999987655655444432 33333 3333 35567889999974 2223545 7899999999998 8
Q ss_pred hHHHHHHHhh-cCCcEEEe---echhHHHHHHhc
Q 007475 477 VANAVASSLC-QMGIKVAT---ICKDDYEKLKLR 506 (602)
Q Consensus 477 ~~~aia~~lc-~~~~~v~~---~~~~~~~~~~~~ 506 (602)
.|++.+.+|+ .++++.+. -+.++-+++.++
T Consensus 140 qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~ 173 (326)
T PRK06046 140 QARTQLLALSEVFDLEEVRVYDRTKSSAEKFVER 173 (326)
T ss_pred HHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHH
Confidence 8999999998 56777666 333444444444
No 302
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=56.18 E-value=13 Score=43.30 Aligned_cols=46 Identities=24% Similarity=0.257 Sum_probs=35.3
Q ss_pred cchhhhhhcCCc----cCceEEEeccccchhhHHHHHHHhhcC-CcEEEeech
Q 007475 450 LAAAVVVNSLPK----TTAHVLLRGTVTANKVANAVASSLCQM-GIKVATICK 497 (602)
Q Consensus 450 l~aa~vl~~ip~----~~~~v~l~g~~~~~k~~~aia~~lc~~-~~~v~~~~~ 497 (602)
|.+..++++-|. ..+.|++||+++ =+|+.++.+|.++ |.+|..+++
T Consensus 298 ~~~g~~~~~~~~~~~~~~~~VLVTGatG--FIGs~Lv~~Ll~~~g~~V~~l~r 348 (660)
T PRK08125 298 LVAGARLNSKPACSAKRRTRVLILGVNG--FIGNHLTERLLRDDNYEVYGLDI 348 (660)
T ss_pred CCCCCEecccchhhhhcCCEEEEECCCc--hHHHHHHHHHHhCCCcEEEEEeC
Confidence 333334556664 667899999997 9999999999985 799998543
No 303
>PLN02220 delta-9 acyl-lipid desaturase
Probab=56.05 E-value=86 Score=33.68 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=17.2
Q ss_pred CCcccccCCchhHHHhhhC-CCCCCCC
Q 007475 237 PPLKFLMYTPSYHSLHHTQ-FRTNYSL 262 (602)
Q Consensus 237 P~Lk~li~Tp~~H~lHH~~-~~~NYGl 262 (602)
+++..+-.+-..|+.||.. .+.++|.
T Consensus 234 ~~lallt~GEgwHNnHHafP~sar~G~ 260 (299)
T PLN02220 234 WWLSLFTMGESWHNNHHAFESSARQGL 260 (299)
T ss_pred HHHHHHhccccccccccCCccchhhCC
Confidence 3444444567799999998 4555564
No 304
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=55.86 E-value=16 Score=38.59 Aligned_cols=40 Identities=28% Similarity=0.233 Sum_probs=29.3
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCc-EEEeech--hHHHHHHh
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGI-KVATICK--DDYEKLKL 505 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~-~v~~~~~--~~~~~~~~ 505 (602)
-|.|++.|+.+ .|||||.+|.+.|+ +|.+.++ ++=++|.+
T Consensus 127 ~k~vlilGaGG---aarAi~~aL~~~g~~~i~i~nR~~~ka~~La~ 169 (283)
T PRK14027 127 LDSVVQVGAGG---VGNAVAYALVTHGVQKLQVADLDTSRAQALAD 169 (283)
T ss_pred CCeEEEECCcH---HHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Confidence 46899999996 49999999999998 4656443 34444443
No 305
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=55.65 E-value=14 Score=38.38 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=41.7
Q ss_pred EEeccccchhhHHHHHHHhhcCC--cEEEeechhHHHHHHhcCchhhhccceeccccccccceEEEEcCCCCHHHhhcCC
Q 007475 467 LLRGTVTANKVANAVASSLCQMG--IKVATICKDDYEKLKLRIPVEAQHNLVLSTSYAAHKTKIWLVGDDLTGKEQARAP 544 (602)
Q Consensus 467 ~l~g~~~~~k~~~aia~~lc~~~--~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~w~vg~~~~~~eq~~a~ 544 (602)
++||+++ =||+.|+..|+++| .+|.+.+..... +.... ..+. ..+.++.||-.++++=..|-
T Consensus 1 LVTGgsG--flG~~iv~~Ll~~g~~~~Vr~~d~~~~~--------~~~~~---~~~~---~~~~~~~~Di~d~~~l~~a~ 64 (280)
T PF01073_consen 1 LVTGGSG--FLGSHIVRQLLERGYIYEVRVLDRSPPP--------KFLKD---LQKS---GVKEYIQGDITDPESLEEAL 64 (280)
T ss_pred CEEcCCc--HHHHHHHHHHHHCCCceEEEEccccccc--------ccchh---hhcc---cceeEEEeccccHHHHHHHh
Confidence 4799997 99999999999999 677663311111 11000 0010 22337888877777777788
Q ss_pred CCCe
Q 007475 545 KGTI 548 (602)
Q Consensus 545 ~gt~ 548 (602)
+|..
T Consensus 65 ~g~d 68 (280)
T PF01073_consen 65 EGVD 68 (280)
T ss_pred cCCc
Confidence 8764
No 306
>TIGR00035 asp_race aspartate racemase.
Probab=55.49 E-value=22 Score=35.91 Aligned_cols=136 Identities=15% Similarity=0.208 Sum_probs=85.1
Q ss_pred eeccchhhhHHHHHHHHHHHHHHhcCCeEEeeccccccccccccccchhccCCCCccEEEeeCCccchhhhhhcCCccCc
Q 007475 385 QYNLPWRREAINSLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIKVVDGSSLAAAVVVNSLPKTTA 464 (602)
Q Consensus 385 ~y~~~~~~~~in~~ie~ai~~a~~~g~kv~sl~~lnk~~~ln~~g~l~~~~~p~~l~vrvv~g~tl~aa~vl~~ip~~~~ 464 (602)
+|.+.-..+.+...+.+++.+-++.|++.+-++- |-... +.++-.+...+.|++--..|++.+ ++ .+.+
T Consensus 50 ~~~~~~~~~~~~~~l~~~~~~L~~~g~d~iviaC-NTah~-------~~~~l~~~~~iPii~i~~~~~~~~-~~--~~~~ 118 (229)
T TIGR00035 50 AYILGRGEDRPRPILIDIAVKLENAGADFIIMPC-NTAHK-------FAEDIQKAIGIPLISMIEETAEAV-KE--DGVK 118 (229)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHcCCCEEEECC-ccHHH-------HHHHHHHhCCCCEechHHHHHHHH-HH--cCCC
Confidence 5666556677999999999999999999999875 32221 233222226678888655555544 32 2778
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEeechhH--------HHHHHhcCchhhhccce-eccccccccceEEEEc
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVATICKDD--------YEKLKLRIPVEAQHNLV-LSTSYAAHKTKIWLVG 532 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~~--------~~~~~~~~~~~~~~~l~-~~~~~~~~~~k~w~vg 532 (602)
.|-+.|... +=-++.-..+|-++|+.|..-+.+. |+.+++..+++.++.+. ....+.++.+.+-|.|
T Consensus 119 ~VgvLaT~~-T~~s~~y~~~l~~~g~~v~~p~~~~~~~i~~~i~~~~~~g~~~~~~~~l~~~~~~l~~~gad~iILg 194 (229)
T TIGR00035 119 KAGLLGTKG-TMKDGVYEREMKKHGIEIVTPDKEEQEAIMSGIYDEVKAGNIELGRELLLKIAKELEERGAEGIILG 194 (229)
T ss_pred EEEEEecHH-HHHhHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 898887764 2334447778889999998843332 44455443344444444 3334544566665654
No 307
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=55.35 E-value=14 Score=39.57 Aligned_cols=45 Identities=31% Similarity=0.373 Sum_probs=33.7
Q ss_pred ccchhhhhhcCCc---cCceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 449 SLAAAVVVNSLPK---TTAHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 449 tl~aa~vl~~ip~---~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|||||.- -.+|. ...+|...|+. =.|-+.|.+|.|+|++|+++.+
T Consensus 2 ~~~~~~~-~~~~~~~~~~~dV~IvGaG---~aGl~~A~~L~~~G~~v~v~E~ 49 (415)
T PRK07364 2 TLTAATS-PTLPSTRSLTYDVAIVGGG---IVGLTLAAALKDSGLRIALIEA 49 (415)
T ss_pred cccccCC-CCCCCCCccccCEEEECcC---HHHHHHHHHHhcCCCEEEEEec
Confidence 5666542 23332 34679999998 7899999999999999999543
No 308
>PRK07578 short chain dehydrogenase; Provisional
Probab=55.15 E-value=13 Score=35.66 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=25.2
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
.|++||++ +-+|+++|..|+++ .+|+..+
T Consensus 2 ~vlItGas--~giG~~la~~l~~~-~~vi~~~ 30 (199)
T PRK07578 2 KILVIGAS--GTIGRAVVAELSKR-HEVITAG 30 (199)
T ss_pred eEEEEcCC--cHHHHHHHHHHHhc-CcEEEEe
Confidence 58999999 59999999999998 8888743
No 309
>PLN02434 fatty acid hydroxylase
Probab=54.71 E-value=22 Score=37.00 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhh---hhhhcccCCccCc
Q 007475 127 GVILTILVHMGPVEFLYYWFHRALHHHY---LYSRYHSHHHSSV 167 (602)
Q Consensus 127 glil~lll~llv~Df~fYW~HRllH~~~---LY~riHkvHHss~ 167 (602)
++....++..++.|...|..|..--... -.|+.|..||--.
T Consensus 165 ~~~~G~l~gYl~Yd~~Hy~lH~~~p~~~~~r~lkr~H~~HHfk~ 208 (237)
T PLN02434 165 ALFGGGLLGYVMYDCTHYFLHHGQPSTDVLRNLKKYHLNHHFRD 208 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCC
Confidence 4555666777888998888887532222 3688999999644
No 310
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=54.71 E-value=21 Score=35.53 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=26.5
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+.|.+.|.. ++|+++|..|.+.|.+|++
T Consensus 29 k~v~I~G~G---~vG~~~A~~L~~~G~~Vvv 56 (200)
T cd01075 29 KTVAVQGLG---KVGYKLAEHLLEEGAKLIV 56 (200)
T ss_pred CEEEEECCC---HHHHHHHHHHHHCCCEEEE
Confidence 679999997 9999999999999999998
No 311
>PRK08309 short chain dehydrogenase; Provisional
Probab=54.63 E-value=20 Score=35.04 Aligned_cols=38 Identities=29% Similarity=0.462 Sum_probs=27.4
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEeec--hhHHHHHHh
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVATIC--KDDYEKLKL 505 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~--~~~~~~~~~ 505 (602)
.|++||+++ +|.+++..|+++|.+|.+.. +++-+.++.
T Consensus 2 ~vlVtGGtG---~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~ 41 (177)
T PRK08309 2 HALVIGGTG---MLKRVSLWLCEKGFHVSVIARREVKLENVKR 41 (177)
T ss_pred EEEEECcCH---HHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence 489999983 55679999999999998833 334444443
No 312
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=54.61 E-value=14 Score=40.17 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=29.3
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+.+.|+.||+++ =||..|+..|-+||++|.-
T Consensus 5 ~~~~VcVTGAsG--fIgswivk~LL~rGY~V~g 35 (327)
T KOG1502|consen 5 EGKKVCVTGASG--FIGSWIVKLLLSRGYTVRG 35 (327)
T ss_pred CCcEEEEeCCch--HHHHHHHHHHHhCCCEEEE
Confidence 678999999996 9999999999999999988
No 313
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=54.47 E-value=11 Score=40.23 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=26.9
Q ss_pred EEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 466 VLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 466 v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|.+||+|+ =+|++++..|++.|.+|.++++
T Consensus 1 IliTGgTG--lIG~~L~~~L~~~gh~v~iltR 30 (297)
T COG1090 1 ILITGGTG--LIGRALTARLRKGGHQVTILTR 30 (297)
T ss_pred CeEecccc--chhHHHHHHHHhCCCeEEEEEc
Confidence 57999997 9999999999999999999443
No 314
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=54.35 E-value=32 Score=36.31 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHhcCCeEEeeccccccccccccccchhccCCCCccEEEeeCCccchhh---hhhcCCc--cCceEEEe
Q 007475 395 INSLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIKVVDGSSLAAAV---VVNSLPK--TTAHVLLR 469 (602)
Q Consensus 395 in~~ie~ai~~a~~~g~kv~sl~~lnk~~~ln~~g~l~~~~~p~~l~vrvv~g~tl~aa~---vl~~ip~--~~~~v~l~ 469 (602)
.|..+++ .|+++|++|..+.-.+. |-+-+..+-+-.+ .++..+. .-+.|.+.
T Consensus 101 ~~~~l~~---~a~~~gi~v~~~~~~~~--------------------va~~n~~~~Ae~ai~~al~~~~~~l~gk~v~Ii 157 (287)
T TIGR02853 101 SNPYLEQ---LAADAGVKLIELFERDD--------------------VAIYNSIPTAEGAIMMAIEHTDFTIHGSNVMVL 157 (287)
T ss_pred CCHHHHH---HHHHCCCeEEEEEeccc--------------------eEEEccHhHHHHHHHHHHHhcCCCCCCCEEEEE
Confidence 5566665 68889999997665331 1111111111112 2333222 23689999
Q ss_pred ccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 470 GTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 470 g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|.. .+|+++|..|...|.+|.+.++
T Consensus 158 G~G---~iG~avA~~L~~~G~~V~v~~R 182 (287)
T TIGR02853 158 GFG---RTGMTIARTFSALGARVFVGAR 182 (287)
T ss_pred cCh---HHHHHHHHHHHHCCCEEEEEeC
Confidence 997 8999999999999999998444
No 315
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=54.09 E-value=14 Score=40.79 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=27.1
Q ss_pred CceEEEeccc--------------cchhhHHHHHHHhhcCCcEEEeec
Q 007475 463 TAHVLLRGTV--------------TANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 463 ~~~v~l~g~~--------------~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
-+.|+.||.. |.-|+|++||.+|.++|.+|.+++
T Consensus 185 ~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~ 232 (390)
T TIGR00521 185 GKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLIT 232 (390)
T ss_pred CceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeC
Confidence 4678888773 102899999999999999999844
No 316
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=53.63 E-value=26 Score=36.31 Aligned_cols=52 Identities=17% Similarity=0.237 Sum_probs=38.4
Q ss_pred ccEEEeeCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcC-CcEEEe
Q 007475 440 LKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQM-GIKVAT 494 (602)
Q Consensus 440 l~vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~-~~~v~~ 494 (602)
++..-|.|..|+-.+.=....++ ..|||-|++ -.+....+..|.++ |++|.-
T Consensus 83 ~~~~Rv~G~dl~~~ll~~~~~~~-~~v~llG~~--~~v~~~a~~~l~~~y~l~i~g 135 (243)
T PRK03692 83 AQVSRVAGADLWEALMARAGKEG-TPVFLVGGK--PEVLAQTEAKLRTQWNVNIVG 135 (243)
T ss_pred CCCCeeChHHHHHHHHHHHHhcC-CeEEEECCC--HHHHHHHHHHHHHHhCCEEEE
Confidence 34556778888877554434445 789999999 48889999999865 888775
No 317
>PRK12377 putative replication protein; Provisional
Probab=53.48 E-value=19 Score=37.40 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=35.6
Q ss_pred hhcCCccCceEEEeccccchh--hHHHHHHHhhcCCcEEEeechh-HHHHHHh
Q 007475 456 VNSLPKTTAHVLLRGTVTANK--VANAVASSLCQMGIKVATICKD-DYEKLKL 505 (602)
Q Consensus 456 l~~ip~~~~~v~l~g~~~~~k--~~~aia~~lc~~~~~v~~~~~~-~~~~~~~ 505 (602)
.++.-.+..-++|.|.+|.-| ++.|||..||++|.+|+.++.. -.+.|+.
T Consensus 94 a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~ 146 (248)
T PRK12377 94 ADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHE 146 (248)
T ss_pred HHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHH
Confidence 344444456789999776557 9999999999999999874443 4444544
No 318
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=53.38 E-value=52 Score=35.28 Aligned_cols=80 Identities=18% Similarity=0.200 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHhcCCeEEeeccccccccccccccchhccCCCCccEEEeeCCccchhhhhhcCCccCceEEEecccc
Q 007475 394 AINSLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVT 473 (602)
Q Consensus 394 ~in~~ie~ai~~a~~~g~kv~sl~~lnk~~~ln~~g~l~~~~~p~~l~vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~ 473 (602)
|+.|-|+.|-..+.+.|-+|.+||-|=-|.+ -|++.-+ +.|++||. ++++|++ ..|+++ |-+
T Consensus 14 GV~rAi~~a~~~~~~~~~~iytlG~iIHN~~-------vv~~L~~-~GV~~v~~--------~~~v~~~-~~Viir-AHG 75 (298)
T PRK01045 14 GVDRAIEIVERALEKYGAPIYVRHEIVHNRY-------VVERLEK-KGAIFVEE--------LDEVPDG-AIVIFS-AHG 75 (298)
T ss_pred cHHHHHHHHHHHHHhcCCCeEEEecCccCHH-------HHHHHHH-CCCEEecC--------cccCCCC-CEEEEe-CCC
Confidence 3455555554433455778999999766655 3455566 78888874 4677754 245555 332
Q ss_pred chhhHHHHHHHhhcCCcEEEe
Q 007475 474 ANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 474 ~~k~~~aia~~lc~~~~~v~~ 494 (602)
+..++-..|-+||++|+=
T Consensus 76 ---v~~~~~~~~~~~g~~viD 93 (298)
T PRK01045 76 ---VSPAVREEAKERGLTVID 93 (298)
T ss_pred ---CCHHHHHHHHHCCCeEEe
Confidence 346677778888888863
No 319
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=53.37 E-value=15 Score=38.33 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=26.8
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
|.|+.||.. +=+|++.+.+|.+||++|+.
T Consensus 6 Kna~vtgga--gGIGl~~sk~Ll~kgik~~~ 34 (261)
T KOG4169|consen 6 KNALVTGGA--GGIGLATSKALLEKGIKVLV 34 (261)
T ss_pred ceEEEecCC--chhhHHHHHHHHHcCchhee
Confidence 678999999 48999999999999999998
No 320
>PRK05855 short chain dehydrogenase; Validated
Probab=52.65 E-value=22 Score=39.45 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=28.6
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
.+-+++||++ +=+|+++|..|.++|.+|++.++
T Consensus 315 ~~~~lv~G~s--~giG~~~a~~l~~~G~~v~~~~r 347 (582)
T PRK05855 315 GKLVVVTGAG--SGIGRETALAFAREGAEVVASDI 347 (582)
T ss_pred CCEEEEECCc--CHHHHHHHHHHHHCCCEEEEEeC
Confidence 3568999999 59999999999999999998544
No 321
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=52.49 E-value=13 Score=38.09 Aligned_cols=27 Identities=15% Similarity=0.306 Sum_probs=24.1
Q ss_pred EEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 466 VLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 466 v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
|++||+++ =||+.+|..|.++|.+|+.
T Consensus 2 ilVtGa~G--fiG~~l~~~L~~~g~~~v~ 28 (308)
T PRK11150 2 IIVTGGAG--FIGSNIVKALNDKGITDIL 28 (308)
T ss_pred EEEecCCc--HHHHHHHHHHHhCCCceEE
Confidence 79999997 8999999999999986554
No 322
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=52.39 E-value=18 Score=39.46 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=36.0
Q ss_pred hhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEeechhHH
Q 007475 456 VNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVATICKDDY 500 (602)
Q Consensus 456 l~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~~~ 500 (602)
++.++++.+.|.+.|.++ .+|..+|.+|.++|..|.+.+.+..
T Consensus 91 ~~~~~~~~~~I~IiGG~G--lmG~slA~~l~~~G~~V~~~d~~~~ 133 (374)
T PRK11199 91 FKTLNPDLRPVVIVGGKG--QLGRLFAKMLTLSGYQVRILEQDDW 133 (374)
T ss_pred ccccCcccceEEEEcCCC--hhhHHHHHHHHHCCCeEEEeCCCcc
Confidence 466777888999999665 9999999999999999999665543
No 323
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=52.34 E-value=15 Score=39.97 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=33.3
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEe---echhHHHHHHh
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVAT---ICKDDYEKLKL 505 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~---~~~~~~~~~~~ 505 (602)
.+.|+.||+.+ =+|...++.|-++|..|++ ++....+++++
T Consensus 2 ~~~VLVtGgaG--yiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r 45 (343)
T KOG1371|consen 2 GKHVLVTGGAG--YIGSHTVLALLKRGYGVVIVDNLNNSYLESLKR 45 (343)
T ss_pred CcEEEEecCCc--ceehHHHHHHHhCCCcEEEEecccccchhHHHH
Confidence 46799999997 9999999999999999999 44444555544
No 324
>PLN02174 aldehyde dehydrogenase family 3 member H1
Probab=52.21 E-value=21 Score=40.44 Aligned_cols=48 Identities=13% Similarity=0.310 Sum_probs=36.6
Q ss_pred cEEEeeCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 441 KIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 441 ~vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
-+.||+|..-+.+..+. ++++.|++||++ .+|+.|+....++..+|++
T Consensus 170 vv~vv~G~~~~~~~l~~---~~vd~V~FTGS~---~~G~~I~~~aa~~l~~v~L 217 (484)
T PLN02174 170 AVRVVEGAVTETTALLE---QKWDKIFYTGSS---KIGRVIMAAAAKHLTPVVL 217 (484)
T ss_pred EEEEEECChHHHHHHhc---ccCCEEEEECCh---HHHHHHHHHHHhcCCcEEE
Confidence 46678875433444443 578999999999 9999999988888888877
No 325
>cd07108 ALDH_MGR_2402 Magnetospirillum NAD(P)+-dependent aldehyde dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde dehydrogenase of Magnetospirillum gryphiswaldense MSR-1 (MGR_2402) , and other similar sequences, are present in this CD.
Probab=52.13 E-value=25 Score=39.00 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=33.6
Q ss_pred cEEEeeCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 441 KIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 441 ~vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
-+.+|.|+.-..+-.|-+-| +++-|++||++ ++|+.|+....++..+|++
T Consensus 175 ~~~~v~g~~~~~~~~L~~~~-~vd~v~ftGs~---~~g~~v~~~aa~~l~~~~l 224 (457)
T cd07108 175 VLNVITGYGEECGAALVDHP-DVDKVTFTGST---EVGKIIYRAAADRLIPVSL 224 (457)
T ss_pred cEEEEeCCchHHHHHHhcCC-CcCEEEEECcH---HHHHHHHHHHhccCCeEEE
Confidence 36677775433332222223 67888999988 8899998887777777765
No 326
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=51.92 E-value=22 Score=34.21 Aligned_cols=41 Identities=24% Similarity=0.247 Sum_probs=34.6
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEeechhHHHHHHh
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVATICKDDYEKLKL 505 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~~~~~~~~ 505 (602)
.-+.|++.|.. |+|...|..|.+.|.+|.+++++.-+.++.
T Consensus 12 ~~~~vlVvGGG---~va~rka~~Ll~~ga~V~VIsp~~~~~l~~ 52 (157)
T PRK06719 12 HNKVVVIIGGG---KIAYRKASGLKDTGAFVTVVSPEICKEMKE 52 (157)
T ss_pred CCCEEEEECCC---HHHHHHHHHHHhCCCEEEEEcCccCHHHHh
Confidence 44789999998 999999999999999999987776565543
No 327
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=51.47 E-value=18 Score=42.16 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=37.7
Q ss_pred cCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEe--echhHHHHHHhc
Q 007475 458 SLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT--ICKDDYEKLKLR 506 (602)
Q Consensus 458 ~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~--~~~~~~~~~~~~ 506 (602)
++++..+.|.+.|.. ++|+.+|..|.++|++|++ .+.|+-++++++
T Consensus 395 ~~~~~~~~vII~G~G---r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~ 442 (621)
T PRK03562 395 EIDEQQPRVIIAGFG---RFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF 442 (621)
T ss_pred ccccccCcEEEEecC---hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc
Confidence 444556899999999 9999999999999999988 566677777653
No 328
>PRK06199 ornithine cyclodeaminase; Validated
Probab=51.09 E-value=75 Score=35.01 Aligned_cols=99 Identities=16% Similarity=0.234 Sum_probs=69.1
Q ss_pred hcCCeEEeeccccccccccccccchhccCCC-CccEEEeeCCccch-------hhhhhcC-CccCceEEEeccccchhhH
Q 007475 408 AKGVKVISLGLLNQGEELNRNGEIYLERQPN-KLKIKVVDGSSLAA-------AVVVNSL-PKTTAHVLLRGTVTANKVA 478 (602)
Q Consensus 408 ~~g~kv~sl~~lnk~~~ln~~g~l~~~~~p~-~l~vrvv~g~tl~a-------a~vl~~i-p~~~~~v~l~g~~~~~k~~ 478 (602)
..|+|++|.--=|....|...-.+++--+|+ ..-.=++||+.||+ |+-.+-+ +++.+.|-+.|+. ..|
T Consensus 91 ~~gvK~v~~~p~N~~~glp~~~g~v~L~D~~TG~p~Ai~dg~~lTa~RTaA~salaa~~LAr~da~~l~iiG~G---~QA 167 (379)
T PRK06199 91 TAGVKWYGSNIANREKGLPRSILMFVLNDADTGAPLAIMSANLLSAYRTGAVPGVGARHLARKDSKVVGLLGPG---VMG 167 (379)
T ss_pred eeEEEEeccCCCccccCCCceeEEEEEeeCCCCceEEEEcCcchhhhHHHHHHHHHHHHhccCCCCEEEEECCc---HHH
Confidence 4789999987777766665555555555554 46667899999974 4445666 7899999999999 889
Q ss_pred HHHHHHhhc-C-Cc-EEEeec--hhHHHHHHhcCch
Q 007475 479 NAVASSLCQ-M-GI-KVATIC--KDDYEKLKLRIPV 509 (602)
Q Consensus 479 ~aia~~lc~-~-~~-~v~~~~--~~~~~~~~~~~~~ 509 (602)
|.-+.++|+ + ++ +|.+.+ .++-+++.++...
T Consensus 168 ~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~ 203 (379)
T PRK06199 168 KTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAE 203 (379)
T ss_pred HHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHH
Confidence 999999995 4 34 566633 3444555554433
No 329
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=50.33 E-value=15 Score=38.57 Aligned_cols=40 Identities=28% Similarity=0.309 Sum_probs=30.0
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcE-EEeechh--HHHHHHhc
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIK-VATICKD--DYEKLKLR 506 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~-v~~~~~~--~~~~~~~~ 506 (602)
+.|++.|+.+ .||||+.+|.+.|++ |.+.+++ +-++|.++
T Consensus 123 ~~vlilGaGG---aarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~ 165 (272)
T PRK12550 123 LVVALRGSGG---MAKAVAAALRDAGFTDGTIVARNEKTGKALAEL 165 (272)
T ss_pred CeEEEECCcH---HHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence 5799999986 499999999999985 7775443 44555443
No 330
>PRK08324 short chain dehydrogenase; Validated
Probab=50.21 E-value=22 Score=41.70 Aligned_cols=32 Identities=22% Similarity=0.199 Sum_probs=28.5
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|-|++||+++ -+|+++|..|.++|.+|++.++
T Consensus 423 k~vLVTGasg--gIG~~la~~L~~~Ga~Vvl~~r 454 (681)
T PRK08324 423 KVALVTGAAG--GIGKATAKRLAAEGACVVLADL 454 (681)
T ss_pred CEEEEecCCC--HHHHHHHHHHHHCcCEEEEEeC
Confidence 6799999994 9999999999999999998543
No 331
>PRK08939 primosomal protein DnaI; Reviewed
Probab=50.11 E-value=24 Score=37.56 Aligned_cols=44 Identities=20% Similarity=0.294 Sum_probs=33.0
Q ss_pred CceEEEeccccchh--hHHHHHHHhhcCCcEEEeechhH-HHHHHhc
Q 007475 463 TAHVLLRGTVTANK--VANAVASSLCQMGIKVATICKDD-YEKLKLR 506 (602)
Q Consensus 463 ~~~v~l~g~~~~~k--~~~aia~~lc~~~~~v~~~~~~~-~~~~~~~ 506 (602)
.+-++|.|.+|.-| ++.|||..||++|++|..++-.+ ...|+..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~ 202 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNS 202 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHH
Confidence 35679988876556 99999999999999998744443 4555544
No 332
>cd07132 ALDH_F3AB Aldehyde dehydrogenase family 3 members A1, A2, and B1 and related proteins. NAD(P)+-dependent, aldehyde dehydrogenase, family 3 members A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and similar sequences are included in this CD. Human ALDH3A1 is a homodimer with a critical role in cellular defense against oxidative stress; it catalyzes the oxidation of various cellular membrane lipid-derived aldehydes. Corneal crystalline ALDH3A1 protects the cornea and underlying lens against UV-induced oxidative stress. Human ALDH3A2, a microsomal homodimer, catalyzes the oxidation of long-chain aliphatic aldehydes to fatty acids. Human ALDH3B1 is highly expressed in the kidney and liver and catalyzes the oxidation of various medium- and long-chain saturated and unsaturated aliphatic aldehydes.
Probab=50.10 E-value=23 Score=39.41 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=33.0
Q ss_pred EEEeeCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 442 IKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 442 vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+.||+|+.-+.+..+. | +++.|.+||++ ++|+.|+....+++.+|.+
T Consensus 159 ~~vv~g~~~~~~~l~~--~-~vd~V~fTGs~---~~g~~i~~~a~~~~~~~~l 205 (443)
T cd07132 159 YPVVLGGVEETTELLK--Q-RFDYIFYTGST---SVGKIVMQAAAKHLTPVTL 205 (443)
T ss_pred EEEEeCCHHHHHHHHh--C-CCCEEEEECCh---HHHHHHHHHHHhhCCceEE
Confidence 4467665434444443 4 68899999988 8899988877777777655
No 333
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=49.42 E-value=18 Score=37.90 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=30.6
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCc-EEEeech--hHHHHHHh
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGI-KVATICK--DDYEKLKL 505 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~-~v~~~~~--~~~~~~~~ 505 (602)
-+.|++.|+. -.|||+|.+|++.|+ +|.+.++ ++-+++.+
T Consensus 127 ~k~vlIlGaG---Gaaraia~aL~~~G~~~I~I~nR~~~ka~~la~ 169 (284)
T PRK12549 127 LERVVQLGAG---GAGAAVAHALLTLGVERLTIFDVDPARAAALAD 169 (284)
T ss_pred CCEEEEECCc---HHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 3789999999 679999999999998 6777544 34444433
No 334
>PRK07952 DNA replication protein DnaC; Validated
Probab=49.39 E-value=32 Score=35.63 Aligned_cols=50 Identities=24% Similarity=0.293 Sum_probs=35.8
Q ss_pred hhcCCccCceEEEeccccchh--hHHHHHHHhhcCCcEEEeechhH-HHHHHh
Q 007475 456 VNSLPKTTAHVLLRGTVTANK--VANAVASSLCQMGIKVATICKDD-YEKLKL 505 (602)
Q Consensus 456 l~~ip~~~~~v~l~g~~~~~k--~~~aia~~lc~~~~~v~~~~~~~-~~~~~~ 505 (602)
.++..++..-++|.|..|.-| ++.|||.+|+++|.+|+.++-.+ .+.++.
T Consensus 92 ~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~ 144 (244)
T PRK07952 92 VEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKD 144 (244)
T ss_pred HHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHH
Confidence 344444556789999876557 89999999999999998854443 334443
No 335
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=48.56 E-value=94 Score=29.30 Aligned_cols=92 Identities=20% Similarity=0.142 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHHhcCCeEEeeccccccccccccccchhc--c-CCCCccE-E----EeeCCccchhhhhhcCCccCc
Q 007475 393 EAINSLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLE--R-QPNKLKI-K----VVDGSSLAAAVVVNSLPKTTA 464 (602)
Q Consensus 393 ~~in~~ie~ai~~a~~~g~kv~sl~~lnk~~~ln~~g~l~~~--~-~p~~l~v-r----vv~g~tl~aa~vl~~ip~~~~ 464 (602)
+.+=.-|.+.|..|.+.|+.|+-.. +.+ .++|++.=. . .|++.-+ | -..|+.|. ..|++ .|++
T Consensus 19 ~~~~~~i~~l~~~ar~~g~pVi~~~---~~~--~~~g~~~~~l~~~~~~~~vi~K~~~saf~~t~L~--~~L~~--~gi~ 89 (157)
T cd01012 19 DELINNTVKLAKAAKLLDVPVILTE---QYP--KGLGPTVPELREVFPDAPVIEKTSFSCWEDEAFR--KALKA--TGRK 89 (157)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEe---eCC--CCCCCchHHHHhhCCCCCceecccccCcCCHHHH--HHHHh--cCCC
Confidence 3344446666777889999999763 111 233443311 1 2331111 0 11222222 22332 4889
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
++.++|-.+ +=--.+.|..+.++|++|.+
T Consensus 90 ~lii~G~~T-~~CV~~Ta~~a~~~g~~v~v 118 (157)
T cd01012 90 QVVLAGLET-HVCVLQTALDLLEEGYEVFV 118 (157)
T ss_pred EEEEEEeec-cHHHHHHHHHHHHCCCEEEE
Confidence 999999997 55568888889999999999
No 336
>PRK08181 transposase; Validated
Probab=48.47 E-value=13 Score=38.93 Aligned_cols=44 Identities=30% Similarity=0.326 Sum_probs=33.5
Q ss_pred ccCceEEEeccccchh--hHHHHHHHhhcCCcEEEeec-hhHHHHHH
Q 007475 461 KTTAHVLLRGTVTANK--VANAVASSLCQMGIKVATIC-KDDYEKLK 504 (602)
Q Consensus 461 ~~~~~v~l~g~~~~~k--~~~aia~~lc~~~~~v~~~~-~~~~~~~~ 504 (602)
+.-+.|+|.|.+|.-| ++.|||..+|++|.+|..++ .+-.+.|+
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~ 150 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQ 150 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHH
Confidence 3456699999887667 99999999999999998733 34445554
No 337
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=48.39 E-value=30 Score=33.79 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=22.9
Q ss_pred EEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 466 VLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 466 v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
|-..|+. .+|+.||..+++.|.+|.+
T Consensus 2 V~ViGaG---~mG~~iA~~~a~~G~~V~l 27 (180)
T PF02737_consen 2 VAVIGAG---TMGRGIAALFARAGYEVTL 27 (180)
T ss_dssp EEEES-S---HHHHHHHHHHHHTTSEEEE
T ss_pred EEEEcCC---HHHHHHHHHHHhCCCcEEE
Confidence 5677887 8999999999999999999
No 338
>PRK08727 hypothetical protein; Validated
Probab=48.35 E-value=22 Score=35.96 Aligned_cols=38 Identities=21% Similarity=0.178 Sum_probs=30.5
Q ss_pred ceEEEeccccchh--hHHHHHHHhhcCCcEEEeechhHHH
Q 007475 464 AHVLLRGTVTANK--VANAVASSLCQMGIKVATICKDDYE 501 (602)
Q Consensus 464 ~~v~l~g~~~~~k--~~~aia~~lc~~~~~v~~~~~~~~~ 501 (602)
+-+++.|.++.-| +++|+|.++|++|.+|..++-+++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~ 81 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA 81 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh
Confidence 4599999987657 8999999999999998885555433
No 339
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=47.94 E-value=38 Score=40.53 Aligned_cols=129 Identities=12% Similarity=0.144 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHhcCCeEEeeccccccccccccccchhccCCCCccEEEeeCCccchhhhhhcCCc-cCceEEEeccc
Q 007475 394 AINSLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIKVVDGSSLAAAVVVNSLPK-TTAHVLLRGTV 472 (602)
Q Consensus 394 ~in~~ie~ai~~a~~~g~kv~sl~~lnk~~~ln~~g~l~~~~~p~~l~vrvv~g~tl~aa~vl~~ip~-~~~~v~l~g~~ 472 (602)
.+.+.|++.+.+-.+.|-+|+.+|--|.+..|-==|-+-..--|+ =-|+-.++++-+ |.+=+.+||..
T Consensus 400 ~~~~~~~~~~~~~~~~G~rvl~vA~~~~e~~l~~~Gli~l~Dp~R-----------~~a~~aI~~l~~aGI~v~miTGD~ 468 (755)
T TIGR01647 400 EIEEKVEEKVDELASRGYRALGVARTDEEGRWHFLGLLPLFDPPR-----------HDTKETIERARHLGVEVKMVTGDH 468 (755)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEEEcCCCCcEEEEEeeccCCCh-----------hhHHHHHHHHHHCCCeEEEECCCC
Confidence 455677788887788999999999754322222223332222222 113444444433 77777888888
Q ss_pred cchhhHHHHHHHhhcCCcEEE------------eechhHHHHHHh------cCchhhhccceeccccccccceEEEEcCC
Q 007475 473 TANKVANAVASSLCQMGIKVA------------TICKDDYEKLKL------RIPVEAQHNLVLSTSYAAHKTKIWLVGDD 534 (602)
Q Consensus 473 ~~~k~~~aia~~lc~~~~~v~------------~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~k~w~vg~~ 534 (602)
...+++||..+-=.+ .+. .++.++++++-+ ++.||.+..+ ++.+|++..++=.+||+
T Consensus 469 --~~tA~~IA~~lGI~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vfAr~~Pe~K~~i--V~~lq~~G~~VamvGDG 543 (755)
T TIGR01647 469 --LAIAKETARRLGLGT-NIYTADVLLKGDNRDDLPSGELGEMVEDADGFAEVFPEHKYEI--VEILQKRGHLVGMTGDG 543 (755)
T ss_pred --HHHHHHHHHHcCCCC-CCcCHHHhcCCcchhhCCHHHHHHHHHhCCEEEecCHHHHHHH--HHHHHhcCCEEEEEcCC
Confidence 477778777654211 111 013334444332 2234433333 34456666688899999
Q ss_pred CCHH
Q 007475 535 LTGK 538 (602)
Q Consensus 535 ~~~~ 538 (602)
+.+.
T Consensus 544 vNDa 547 (755)
T TIGR01647 544 VNDA 547 (755)
T ss_pred cccH
Confidence 9874
No 340
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=46.70 E-value=75 Score=33.84 Aligned_cols=80 Identities=19% Similarity=0.294 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHhcCCeEEeeccccccccccccccchhccCCCCccE-EEeeCCccchhhhhhcCCccCceEEEeccc
Q 007475 394 AINSLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKI-KVVDGSSLAAAVVVNSLPKTTAHVLLRGTV 472 (602)
Q Consensus 394 ~in~~ie~ai~~a~~~g~kv~sl~~lnk~~~ln~~g~l~~~~~p~~l~v-rvv~g~tl~aa~vl~~ip~~~~~v~l~g~~ 472 (602)
|+.|-||.|-..+++.|-+|.+||-|=-|.+. |++.-+ +.| ++|+. ++++|++. -|+++.-.
T Consensus 13 GV~rAi~~a~~~~~~~~~~iy~lG~iIHN~~V-------v~~L~~-~Gv~~~v~~--------~~~v~~~~-~ViirAHG 75 (280)
T TIGR00216 13 GVKRAIQMAEEALKESGKPVYTLGPIVHNPQV-------VERLRE-RGVFFFLED--------LDEVAAGD-TVIIRAHG 75 (280)
T ss_pred cHHHHHHHHHHHHhhcCCCeEEecCCccCHHH-------HHHHHH-CCCEEeecC--------cccCCCCC-EEEEeCCC
Confidence 45666666655556668899999987555432 223333 442 45543 45677542 45555222
Q ss_pred cchhhHHHHHHHhhcCCcEEEe
Q 007475 473 TANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 473 ~~~k~~~aia~~lc~~~~~v~~ 494 (602)
++.++-..|.+||++|+=
T Consensus 76 ----v~~~~~~~~~~~gl~viD 93 (280)
T TIGR00216 76 ----VPPEVREELEKKGLEVID 93 (280)
T ss_pred ----CCHHHHHHHHHCCCeEEe
Confidence 357777788888888763
No 341
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=46.21 E-value=18 Score=37.86 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=24.3
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
.|++||+++ =||++++..|+++|.++++
T Consensus 2 kilITGgtG--~iG~~l~~~L~~~g~~~v~ 29 (352)
T PRK10084 2 KILVTGGAG--FIGSAVVRHIINNTQDSVV 29 (352)
T ss_pred eEEEECCCc--HHhHHHHHHHHHhCCCeEE
Confidence 489999996 9999999999999976443
No 342
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=46.18 E-value=30 Score=35.75 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=34.8
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEe--echhHHHHHHhcCch
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVAT--ICKDDYEKLKLRIPV 509 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~--~~~~~~~~~~~~~~~ 509 (602)
-|+.||.. |-+|+++|..+.+-|=+|++ =+.++-+..+.+.|.
T Consensus 7 TiLITGG~--sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~ 51 (245)
T COG3967 7 TILITGGA--SGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPE 51 (245)
T ss_pred EEEEeCCc--chhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcc
Confidence 57999998 59999999999999999999 455566666666553
No 343
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=45.97 E-value=22 Score=38.43 Aligned_cols=39 Identities=31% Similarity=0.351 Sum_probs=31.5
Q ss_pred CceEEEeccccchh--hHHHHHHHhhcCCcEEEeechhHHH
Q 007475 463 TAHVLLRGTVTANK--VANAVASSLCQMGIKVATICKDDYE 501 (602)
Q Consensus 463 ~~~v~l~g~~~~~k--~~~aia~~lc~~~~~v~~~~~~~~~ 501 (602)
++=||++|+.+.-| ++.|+|.+|.+.|-||+++|.|==.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAh 42 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAH 42 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCC
Confidence 34579998887667 9999999999999888888877433
No 344
>KOG3011 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=45.74 E-value=17 Score=38.14 Aligned_cols=134 Identities=16% Similarity=0.325 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhch------hh---hhhhcccCCccCcCCCcchhhhccchhHHHHHHH----HHHHHH
Q 007475 128 VILTILVHMGPVEFLYYWFHRALHH------HY---LYSRYHSHHHSSVVTEPITSVIHPFAEHIVYFLL----FAIPLV 194 (602)
Q Consensus 128 lil~lll~llv~Df~fYW~HRllH~------~~---LY~riHkvHHss~~p~p~ta~~~hPlE~ll~~~l----f~iPll 194 (602)
.+++.+...+..||..=.+|.+--. |. -+-| =+-||.. |++-.+..++|.+..... ...|.-
T Consensus 109 ~~La~~aG~i~AD~~SGl~HWaaD~~Gsv~tP~vG~~f~r-freHH~d----P~tITr~~f~~~~~ll~~a~~f~v~~~d 183 (293)
T KOG3011|consen 109 PALAAYAGYITADLGSGVYHWAADNYGSVSTPWVGRQFER-FQEHHKD----PWTITRRQFANNLHLLARAYTFIVLPLD 183 (293)
T ss_pred HHHHHHHHHHHHhhhcceeEeeccccCccccchhHHHHHH-HHhccCC----cceeeHHHHhhhhHHHHHhheeEecCHH
Confidence 5666667778889998888888543 11 2334 5567754 455556666665332111 111211
Q ss_pred HHHH--hhhhHHHHHHHHHHHHHHHhhccccceeecccccc--cccCCcccccCCchhHHHhhhC-CCCCCCCCchhhhh
Q 007475 195 TTMV--LKNASIASFVGYIIYVDFMNNMGHCNFEFIPMWLF--TVFPPLKFLMYTPSYHSLHHTQ-FRTNYSLFMPIYDY 269 (602)
Q Consensus 195 ~~~l--lg~~si~~i~~yli~~~~~~~~~Hsgye~~P~~~~--~~lP~Lk~li~Tp~~H~lHH~~-~~~NYGl~f~lWDr 269 (602)
.+.- ...+-+.++.+++++..-.+-+.|.=..+ |.+.. +... ++....+|..||.. .++|||....+|.+
T Consensus 184 ~~~q~~~~h~fV~~~~i~v~~tnQiHkWsHTy~gL-P~wVv~LQd~h----lilpRkhH~iHH~aPh~~yyCI~tGw~N~ 258 (293)
T KOG3011|consen 184 LAFQDPVFHGFVFLFAICVLFTNQIHKWSHTYSGL-PPWVVLLQDMH----LILPRKHHRIHHVAPHNTYYCIVSGWWNW 258 (293)
T ss_pred HHhhcccHHHHHHHHHHHHHHHHHHHHHHhhhccC-chHHHHHhhcc----eecccccccccccCccccceEEeechhhc
Confidence 1100 00011222233444455566778854443 55421 1112 34578899999998 78999999999987
Q ss_pred hc
Q 007475 270 IY 271 (602)
Q Consensus 270 LF 271 (602)
..
T Consensus 259 ~L 260 (293)
T KOG3011|consen 259 VL 260 (293)
T ss_pred hH
Confidence 64
No 345
>PRK12320 hypothetical protein; Provisional
Probab=45.74 E-value=22 Score=42.25 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=27.7
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
.|++||+++ .+|+.++..|.++|.+|..+++
T Consensus 2 kILVTGAaG--FIGs~La~~Ll~~G~~Vi~ldr 32 (699)
T PRK12320 2 QILVTDATG--AVGRSVTRQLIAAGHTVSGIAQ 32 (699)
T ss_pred EEEEECCCC--HHHHHHHHHHHhCCCEEEEEeC
Confidence 589999997 9999999999999999988543
No 346
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.68 E-value=33 Score=38.00 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=28.9
Q ss_pred ceEEEeccccchhhHHHHHHHhh-cCCcEEEe-echh----HHHHHHhcCc
Q 007475 464 AHVLLRGTVTANKVANAVASSLC-QMGIKVAT-ICKD----DYEKLKLRIP 508 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc-~~~~~v~~-~~~~----~~~~~~~~~~ 508 (602)
+.|||||+|+ =+|+-+.+.|- |+..||.+ +..+ -.++|++..+
T Consensus 1 ~~vlLTGATG--FLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~ 49 (382)
T COG3320 1 RNVLLTGATG--FLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFD 49 (382)
T ss_pred CeEEEecCch--HhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhh
Confidence 3689999997 99966665555 77779888 2222 3555655543
No 347
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.60 E-value=21 Score=39.07 Aligned_cols=30 Identities=30% Similarity=0.317 Sum_probs=27.2
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
+.|+++|.. +.|+|+|.+|.++|.+|...+
T Consensus 6 k~v~v~G~g---~~G~s~a~~l~~~G~~V~~~d 35 (447)
T PRK02472 6 KKVLVLGLA---KSGYAAAKLLHKLGANVTVND 35 (447)
T ss_pred CEEEEEeeC---HHHHHHHHHHHHCCCEEEEEc
Confidence 678999998 699999999999999999943
No 348
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=45.40 E-value=29 Score=39.75 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=32.1
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEeech--hHHHHHHhc
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATICK--DDYEKLKLR 506 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~--~~~~~~~~~ 506 (602)
-|.|+++|+. -.|||||.+|.++|.+|.+.++ ++-+++.++
T Consensus 379 ~k~vlIlGaG---GagrAia~~L~~~G~~V~i~nR~~e~a~~la~~ 421 (529)
T PLN02520 379 GKLFVVIGAG---GAGKALAYGAKEKGARVVIANRTYERAKELADA 421 (529)
T ss_pred CCEEEEECCc---HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 4689999996 6899999999999999988554 444555443
No 349
>PRK05642 DNA replication initiation factor; Validated
Probab=45.40 E-value=26 Score=35.50 Aligned_cols=38 Identities=13% Similarity=0.102 Sum_probs=30.7
Q ss_pred ceEEEeccccchh--hHHHHHHHhhcCCcEEEeechhHHH
Q 007475 464 AHVLLRGTVTANK--VANAVASSLCQMGIKVATICKDDYE 501 (602)
Q Consensus 464 ~~v~l~g~~~~~k--~~~aia~~lc~~~~~v~~~~~~~~~ 501 (602)
..++|.|..|.-| +.+|+|.+++++|.+|+.++.+++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~ 85 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELL 85 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHH
Confidence 4689988876446 8999999999999999887777654
No 350
>cd07142 ALDH_F2BC Arabidosis aldehyde dehydrogenase family 2 B4, B7, C4-like. Included in this CD is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial homotetramers that oxidize acetaldehyde and glycolaldehyde, but not L-lactaldehyde. Also in this group, is the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde.
Probab=45.27 E-value=37 Score=38.01 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=28.9
Q ss_pred cEEEeeCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhc-CCcEEEe
Q 007475 441 KIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQ-MGIKVAT 494 (602)
Q Consensus 441 ~vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~-~~~~v~~ 494 (602)
-+.+|.|+.-.++..|.+=| +++-|++||++ .+|+.|+.+..+ +..+|++
T Consensus 200 vv~~v~g~~~~~~~~L~~~~-~v~~v~fTGs~---~~G~~v~~~aa~~~~~~v~l 250 (476)
T cd07142 200 VLNIVTGFGPTAGAAIASHM-DVDKVAFTGST---EVGKIIMQLAAKSNLKPVTL 250 (476)
T ss_pred cEEEEeCCchhHHHHHhcCC-CCCEEEEECcH---HHHHHHHHHHHHcCCCeEEE
Confidence 35556654433332232222 36677888877 777777777665 5566655
No 351
>cd07136 ALDH_YwdH-P39616 Bacillus subtilis aldehyde dehydrogenase ywdH-like. Uncharacterized Bacillus subtilis ywdH aldehyde dehydrogenase (locus P39616) most closely related to the ALDHs and fatty ALDHs of families 3 and 14, and similar sequences, are included in this CD.
Probab=45.24 E-value=31 Score=38.69 Aligned_cols=48 Identities=17% Similarity=0.260 Sum_probs=31.5
Q ss_pred cEEEeeCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 441 KIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 441 ~vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
-+.+|+|+.=.++..++. | ++-|.+||++ ++|+.|+....++..+|.+
T Consensus 158 v~~~v~g~~~~~~~L~~~-~--v~~V~fTGS~---~~g~~i~~~aa~~~~~v~l 205 (449)
T cd07136 158 YVAVVEGGVEENQELLDQ-K--FDYIFFTGSV---RVGKIVMEAAAKHLTPVTL 205 (449)
T ss_pred EEEEEeCChHHHHHHhcC-C--CCEEEEECCH---HHHHHHHHHHHhcCCCEEE
Confidence 355677643333334442 2 7888888888 7888888877777777665
No 352
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=45.19 E-value=27 Score=37.41 Aligned_cols=40 Identities=20% Similarity=0.369 Sum_probs=29.6
Q ss_pred EEEeccccchhhHHHHHHHhhcCCc-EEEeechhHHH--HHHhcC
Q 007475 466 VLLRGTVTANKVANAVASSLCQMGI-KVATICKDDYE--KLKLRI 507 (602)
Q Consensus 466 v~l~g~~~~~k~~~aia~~lc~~~~-~v~~~~~~~~~--~~~~~~ 507 (602)
|+.||+++ =+|+.++..|++.|. ++++++.++.. .++++.
T Consensus 1 VLVTGa~G--SIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l 43 (293)
T PF02719_consen 1 VLVTGAGG--SIGSELVRQLLRYGPKKLILFDRDENKLYELEREL 43 (293)
T ss_dssp EEEETTTS--HHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHC
T ss_pred CEEEcccc--HHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHH
Confidence 78999997 899999999999997 46667777654 344443
No 353
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=45.09 E-value=46 Score=32.71 Aligned_cols=53 Identities=26% Similarity=0.472 Sum_probs=36.3
Q ss_pred ccCCCCccEEEeeCC-----------ccchhhhhhcC-Cc-cCceEEEeccccchhhHHHHHHHhhcCCcE
Q 007475 434 ERQPNKLKIKVVDGS-----------SLAAAVVVNSL-PK-TTAHVLLRGTVTANKVANAVASSLCQMGIK 491 (602)
Q Consensus 434 ~~~p~~l~vrvv~g~-----------tl~aa~vl~~i-p~-~~~~v~l~g~~~~~k~~~aia~~lc~~~~~ 491 (602)
+++|+ +++.++..+ .+++ .+++++ +. ...+|+++|.. .+-+++...|.+.|+.
T Consensus 157 ~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~-~~l~~~~~~~~~~~v~icGp~---~m~~~~~~~l~~~gv~ 222 (231)
T cd06215 157 RRHPN-FRLHLILEQPAPGAWGGYRGRLNA-ELLALLVPDLKERTVFVCGPA---GFMKAVKSLLAELGFP 222 (231)
T ss_pred HHCCC-eEEEEEEccCCCCcccccCCcCCH-HHHHHhcCCccCCeEEEECCH---HHHHHHHHHHHHcCCC
Confidence 35677 888866432 2333 345544 43 23589999999 7889999999988873
No 354
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=44.69 E-value=30 Score=37.77 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=30.9
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEeec--hhHHHHHHh
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVATIC--KDDYEKLKL 505 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~--~~~~~~~~~ 505 (602)
.|.+.|.. .+|+++|..|+++|.+|.+++ .++.++++.
T Consensus 2 ~viIiG~G---~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~ 41 (453)
T PRK09496 2 KIIIVGAG---QVGYTLAENLSGENNDVTVIDTDEERLRRLQD 41 (453)
T ss_pred EEEEECCC---HHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh
Confidence 58899986 999999999999999999953 455665544
No 355
>PLN02203 aldehyde dehydrogenase
Probab=44.49 E-value=30 Score=39.22 Aligned_cols=48 Identities=15% Similarity=0.303 Sum_probs=38.2
Q ss_pred cEEEeeCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 441 KIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 441 ~vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
-+.+|+|..-++..++.. | ++.|.+||++ .+|++|+....++..+|++
T Consensus 166 vv~vv~g~~~~~~~l~~~-~--vd~v~fTGS~---~~G~~v~~~aa~~l~~v~l 213 (484)
T PLN02203 166 AVKVIEGGPAVGEQLLQH-K--WDKIFFTGSP---RVGRIIMTAAAKHLTPVAL 213 (484)
T ss_pred EEEEEeCCHHHHHHHHhC-C--CCEEEEECCH---HHHHHHHHHHHhcCCCEEE
Confidence 367888865556666655 4 8889999999 8999999988888888877
No 356
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=44.44 E-value=36 Score=35.35 Aligned_cols=36 Identities=11% Similarity=0.227 Sum_probs=29.7
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEe--echhHHH
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVAT--ICKDDYE 501 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~--~~~~~~~ 501 (602)
.+.|-+.|+. .+|++||..|+++|.+|.+ .+.+.-+
T Consensus 3 i~~I~ViGaG---~mG~~iA~~la~~G~~V~l~d~~~~~l~ 40 (291)
T PRK06035 3 IKVIGVVGSG---VMGQGIAQVFARTGYDVTIVDVSEEILK 40 (291)
T ss_pred CcEEEEECcc---HHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence 4678999998 8999999999999999999 3444443
No 357
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=44.43 E-value=57 Score=39.92 Aligned_cols=126 Identities=15% Similarity=0.185 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhcCCeEEeeccccccccccccccchhccCCCCccEEEeeCCccchhhhh------------hcCC-ccC
Q 007475 397 SLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIKVVDGSSLAAAVVV------------NSLP-KTT 463 (602)
Q Consensus 397 ~~ie~ai~~a~~~g~kv~sl~~lnk~~~ln~~g~l~~~~~p~~l~vrvv~g~tl~aa~vl------------~~ip-~~~ 463 (602)
+.|++++.+-.+.|-+|+.+|--. ++..-+ + ...-.-++-++.+.+.+ +++- .|.
T Consensus 500 ~~i~~~~~~~a~~G~rvlavA~k~----~~~~~~-------~-~~~~~e~~l~~lGli~~~Dp~R~~a~~aI~~l~~aGI 567 (902)
T PRK10517 500 RRIKRVTDTLNRQGLRVVAVATKY----LPAREG-------D-YQRADESDLILEGYIAFLDPPKETTAPALKALKASGV 567 (902)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEec----CCcccc-------c-cccccccCceeeehHhhhCcchhhHHHHHHHHHHCCC
Confidence 346666777778999999998521 110000 0 00000012233333333 3332 267
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEe------echhHHHHHHhc------CchhhhccceeccccccccceEEEE
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVAT------ICKDDYEKLKLR------IPVEAQHNLVLSTSYAAHKTKIWLV 531 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~------~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~k~w~v 531 (602)
+=+.+||.. ...+++||..+-=.+-+|+. ++.|+.+++-++ +.||.+..+| ..+|++..+|=.+
T Consensus 568 ~v~miTGD~--~~tA~~IA~~lGI~~~~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe~K~~IV--~~Lq~~G~vVam~ 643 (902)
T PRK10517 568 TVKILTGDS--ELVAAKVCHEVGLDAGEVLIGSDIETLSDDELANLAERTTLFARLTPMHKERIV--TLLKREGHVVGFM 643 (902)
T ss_pred EEEEEcCCC--HHHHHHHHHHcCCCccCceeHHHHHhCCHHHHHHHHhhCcEEEEcCHHHHHHHH--HHHHHCCCEEEEE
Confidence 778889988 47788888776533223443 233444333222 2244433333 3455566688899
Q ss_pred cCCCCHH
Q 007475 532 GDDLTGK 538 (602)
Q Consensus 532 g~~~~~~ 538 (602)
||++.+.
T Consensus 644 GDGvNDa 650 (902)
T PRK10517 644 GDGINDA 650 (902)
T ss_pred CCCcchH
Confidence 9999874
No 358
>PLN02766 coniferyl-aldehyde dehydrogenase
Probab=44.41 E-value=38 Score=38.43 Aligned_cols=50 Identities=20% Similarity=0.221 Sum_probs=31.0
Q ss_pred cEEEeeCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHhh-cCCcEEEe
Q 007475 441 KIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLC-QMGIKVAT 494 (602)
Q Consensus 441 ~vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc-~~~~~v~~ 494 (602)
-+.+|+|+.-.+...|-+= ++++-|.+||++ .+|++|+.+.+ ++..+|.+
T Consensus 217 vv~~v~g~~~~~~~~L~~~-p~v~~V~FTGS~---~~G~~i~~~aa~~~l~~~~l 267 (501)
T PLN02766 217 VINVVTGFGPTAGAAIASH-MDVDKVSFTGST---EVGRKIMQAAATSNLKQVSL 267 (501)
T ss_pred cEEEEecCchHHHHHHhcC-CCCCEEEEECcH---HHHHHHHHHhhhcCCCeEEE
Confidence 3667776543322222222 347788888888 88888888777 35566655
No 359
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=44.34 E-value=55 Score=39.84 Aligned_cols=127 Identities=13% Similarity=0.208 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhcCCeEEeecccc--ccc---------cccccccchhccCCCCccEEEeeCCccchhhhhhcCCc-cCc
Q 007475 397 SLIEEAILEADAKGVKVISLGLLN--QGE---------ELNRNGEIYLERQPNKLKIKVVDGSSLAAAVVVNSLPK-TTA 464 (602)
Q Consensus 397 ~~ie~ai~~a~~~g~kv~sl~~ln--k~~---------~ln~~g~l~~~~~p~~l~vrvv~g~tl~aa~vl~~ip~-~~~ 464 (602)
+.|++.+.+-.+.|-+|+.+|--+ ..+ .|.==|-+-..--|+ =-|+-.++++-+ |.+
T Consensus 465 ~~i~~~~~~~a~~G~rvlavA~~~~~~~~~~~~~~~e~~l~~lGli~l~Dp~R-----------~~~~~aI~~l~~aGI~ 533 (867)
T TIGR01524 465 SELQDMTAEMNRQGIRVIAVATKTLKVGEADFTKTDEEQLIIEGFLGFLDPPK-----------ESTKEAIAALFKNGIN 533 (867)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEeccCcccccccccccCCcEEEEEEEeeCCCc-----------hhHHHHHHHHHHCCCE
Confidence 457777777788999999999622 110 000001111111111 112223333322 677
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEe------echhHHHHHHhc------CchhhhccceeccccccccceEEEEc
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVAT------ICKDDYEKLKLR------IPVEAQHNLVLSTSYAAHKTKIWLVG 532 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~------~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~k~w~vg 532 (602)
=+.+||.. ...+++||..+-=.+=+|+. .+.+++.++-++ +.+|.+..+| +.+|++..++=.+|
T Consensus 534 vvmiTGD~--~~tA~aIA~~lGI~~~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~K~~iV--~~lq~~G~vVam~G 609 (867)
T TIGR01524 534 VKVLTGDN--EIVTARICQEVGIDANDFLLGADIEELSDEELARELRKYHIFARLTPMQKSRII--GLLKKAGHTVGFLG 609 (867)
T ss_pred EEEEcCCC--HHHHHHHHHHcCCCCCCeeecHhhhhCCHHHHHHHhhhCeEEEECCHHHHHHHH--HHHHhCCCEEEEEC
Confidence 77888888 47788888876532223433 233344432222 2344443333 34555566788999
Q ss_pred CCCCHH
Q 007475 533 DDLTGK 538 (602)
Q Consensus 533 ~~~~~~ 538 (602)
|++.+.
T Consensus 610 DGvNDa 615 (867)
T TIGR01524 610 DGINDA 615 (867)
T ss_pred CCcccH
Confidence 999874
No 360
>PRK06835 DNA replication protein DnaC; Validated
Probab=44.23 E-value=33 Score=37.00 Aligned_cols=42 Identities=26% Similarity=0.368 Sum_probs=32.3
Q ss_pred ceEEEeccccchh--hHHHHHHHhhcCCcEEEeechhH-HHHHHh
Q 007475 464 AHVLLRGTVTANK--VANAVASSLCQMGIKVATICKDD-YEKLKL 505 (602)
Q Consensus 464 ~~v~l~g~~~~~k--~~~aia~~lc~~~~~v~~~~~~~-~~~~~~ 505 (602)
+-++|.|.+|.-| ++.|||..|+++|.+|+.++..+ ++.++.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~ 228 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILRE 228 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHH
Confidence 5689998876556 89999999999999998855444 444544
No 361
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=44.23 E-value=32 Score=35.65 Aligned_cols=94 Identities=17% Similarity=0.246 Sum_probs=56.2
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEe--echhHHHHHHhcCchhh-----------------hccceecccccc-
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVAT--ICKDDYEKLKLRIPVEA-----------------QHNLVLSTSYAA- 523 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~--~~~~~~~~~~~~~~~~~-----------------~~~l~~~~~~~~- 523 (602)
+.|-+.|+. .+|++||..|+++|.+|.+ .+.+.-++++++..... .+++...+++++
T Consensus 2 ~~V~VIG~G---~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 78 (288)
T PRK09260 2 EKLVVVGAG---VMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAA 78 (288)
T ss_pred cEEEEECcc---HHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHh
Confidence 568888998 8999999999999999999 45556565554311100 112222335643
Q ss_pred -ccceEEE--EcCCCCHHH------hhcCCCCCee-eecccCCCcCC
Q 007475 524 -HKTKIWL--VGDDLTGKE------QARAPKGTIF-IPYTQIPPRKL 560 (602)
Q Consensus 524 -~~~k~w~--vg~~~~~~e------q~~a~~gt~f-~~~~~~pp~~~ 560 (602)
++|-+-| |.+...-++ ...+++|+.+ ..-|-+||.++
T Consensus 79 ~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l 125 (288)
T PRK09260 79 VADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEI 125 (288)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHH
Confidence 5564322 222221111 1346889876 77887888733
No 362
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=43.58 E-value=44 Score=34.76 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=26.9
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
.+.|-+.|.. .+|.+||..|++.|.+|.+.
T Consensus 4 ~~~V~vIG~G---~mG~~iA~~l~~~G~~V~~~ 33 (295)
T PLN02545 4 IKKVGVVGAG---QMGSGIAQLAAAAGMDVWLL 33 (295)
T ss_pred cCEEEEECCC---HHHHHHHHHHHhcCCeEEEE
Confidence 4678889998 99999999999999999993
No 363
>cd07145 ALDH_LactADH_F420-Bios Methanocaldococcus jannaschii NAD+-dependent lactaldehyde dehydrogenase-like. NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) involved the biosynthesis of coenzyme F(420) in Methanocaldococcus jannaschii through the oxidation of lactaldehyde to lactate and generation of NAPH, and similar sequences are included in this CD.
Probab=43.51 E-value=38 Score=37.62 Aligned_cols=49 Identities=24% Similarity=0.241 Sum_probs=31.5
Q ss_pred EEEeeCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 442 IKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 442 vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+.+|+|+.-.+.--|-+ .++++-|++||++ .+|+.|+....+++.+|.+
T Consensus 183 ~~~v~g~~~~~~~~l~~-~~~v~~V~fTGs~---~~g~~i~~~aa~~~~~v~l 231 (456)
T cd07145 183 INVVTGYGSEVGDEIVT-NPKVNMISFTGST---AVGLLIASKAGGTGKKVAL 231 (456)
T ss_pred EEEEeCCCchHHHHHhc-CCCCCEEEEECCH---HHHHHHHHHHhhcCCceEE
Confidence 66777643221111111 1367788899988 7888888888888888754
No 364
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=43.11 E-value=1.7e+02 Score=31.03 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=15.5
Q ss_pred CCcccccCCchhHHHhhhCC
Q 007475 237 PPLKFLMYTPSYHSLHHTQF 256 (602)
Q Consensus 237 P~Lk~li~Tp~~H~lHH~~~ 256 (602)
++++.+...-.+|..||...
T Consensus 221 ~~~~~~~~n~~yH~~HH~~p 240 (289)
T cd03508 221 GPLNLLTFNVGYHNEHHDFP 240 (289)
T ss_pred HHHHHHhhccChHHHhcCCC
Confidence 45566667788999999974
No 365
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=43.05 E-value=29 Score=36.44 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=26.7
Q ss_pred ceEEEeccccchhhHHHHHHHhhcC-CcEEEeec
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQM-GIKVATIC 496 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~-~~~v~~~~ 496 (602)
+.|++||+++ =+|++++..|.++ |.+|..++
T Consensus 2 ~~ilVtGatG--fiGs~l~~~L~~~~~~~V~~~~ 33 (347)
T PRK11908 2 KKVLILGVNG--FIGHHLSKRILETTDWEVYGMD 33 (347)
T ss_pred cEEEEECCCc--HHHHHHHHHHHhCCCCeEEEEe
Confidence 4699999997 9999999999876 79988744
No 366
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=42.79 E-value=58 Score=34.76 Aligned_cols=94 Identities=23% Similarity=0.350 Sum_probs=66.6
Q ss_pred HHhcCCeEEeec----cccccccc-------cccccchhccCCC---------CccEEEeeCCc--------cc-hhhhh
Q 007475 406 ADAKGVKVISLG----LLNQGEEL-------NRNGEIYLERQPN---------KLKIKVVDGSS--------LA-AAVVV 456 (602)
Q Consensus 406 a~~~g~kv~sl~----~lnk~~~l-------n~~g~l~~~~~p~---------~l~vrvv~g~t--------l~-aa~vl 456 (602)
|.+.|.+|+.+. -++|+|++ ++++-+.|-|||+ ..+|=|+++.+ |+ ...+.
T Consensus 61 ~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~vls~y~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~ 140 (304)
T TIGR00658 61 AYQLGGHPLYLNPNDLQLGRGESIKDTARVLSRYVDGIMARVYKHEDVEELAKYASVPVINGLTDLFHPCQALADLLTII 140 (304)
T ss_pred HHHcCCCEEEeCCccccCCCCCCHHHHHHHHHHhCCEEEEECCChHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHH
Confidence 566999999885 45777764 5667778889988 35666787643 11 12333
Q ss_pred hcCCc-cCceEEEeccccchhhHHHHHHHhhcCCcEEEeechhHHH
Q 007475 457 NSLPK-TTAHVLLRGTVTANKVANAVASSLCQMGIKVATICKDDYE 501 (602)
Q Consensus 457 ~~ip~-~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~~~~ 501 (602)
...+. +-..|-..|.. +.+++..+..|.+-|++|.+.+.+.|+
T Consensus 141 e~~g~l~g~~v~~vGd~--~~v~~Sl~~~l~~~g~~v~~~~P~~~~ 184 (304)
T TIGR00658 141 EHFGKLKGVKVVYVGDG--NNVCNSLMLAGAKLGMDVVVATPEGYE 184 (304)
T ss_pred HHhCCCCCcEEEEEeCC--CchHHHHHHHHHHcCCEEEEECCchhc
Confidence 44442 22357788998 489999999999999999997777664
No 367
>PLN00015 protochlorophyllide reductase
Probab=42.59 E-value=28 Score=36.20 Aligned_cols=28 Identities=25% Similarity=0.493 Sum_probs=24.5
Q ss_pred EEeccccchhhHHHHHHHhhcCC-cEEEeec
Q 007475 467 LLRGTVTANKVANAVASSLCQMG-IKVATIC 496 (602)
Q Consensus 467 ~l~g~~~~~k~~~aia~~lc~~~-~~v~~~~ 496 (602)
++||++ +=+|+++|..|+++| .+|++.+
T Consensus 1 lITGas--~GIG~aia~~l~~~G~~~V~~~~ 29 (308)
T PLN00015 1 IITGAS--SGLGLATAKALAETGKWHVVMAC 29 (308)
T ss_pred CEeCCC--ChHHHHHHHHHHHCCCCEEEEEe
Confidence 479999 489999999999999 9998844
No 368
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.44 E-value=30 Score=38.72 Aligned_cols=39 Identities=23% Similarity=0.421 Sum_probs=32.0
Q ss_pred hhcCCc-cCceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 456 VNSLPK-TTAHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 456 l~~ip~-~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|..+|+ +-+.|.+.|.. +.|+|+|.+|.++|.+|...++
T Consensus 7 ~~~~~~~~~~~v~v~G~G---~sG~a~a~~L~~~G~~V~~~D~ 46 (473)
T PRK00141 7 LSALPQELSGRVLVAGAG---VSGRGIAAMLSELGCDVVVADD 46 (473)
T ss_pred hhhcccccCCeEEEEccC---HHHHHHHHHHHHCCCEEEEECC
Confidence 344555 66789999987 8999999999999999999543
No 369
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=42.03 E-value=28 Score=40.48 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=28.7
Q ss_pred CceEEEeccccchhhHHHHHHHhhcC--CcEEEeech
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQM--GIKVATICK 497 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~--~~~v~~~~~ 497 (602)
.+.|++||+++ =||++++.+|.++ |++|+.+++
T Consensus 6 ~~~VLVTGatG--fIG~~lv~~Ll~~g~~~~V~~~d~ 40 (668)
T PLN02260 6 PKNILITGAAG--FIASHVANRLIRNYPDYKIVVLDK 40 (668)
T ss_pred CCEEEEECCCc--HHHHHHHHHHHHhCCCCEEEEEeC
Confidence 47899999997 9999999999988 789887554
No 370
>PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function. One of the proteins P32792 from SWISSPROT has been localised to the mitochondria [].
Probab=42.01 E-value=33 Score=36.85 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=35.2
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEe--echhHHHHHHhcC
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVAT--ICKDDYEKLKLRI 507 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~--~~~~~~~~~~~~~ 507 (602)
=|++.|..+ +=++|++|+-|=|||.=|.+ .+.|+++.+++|.
T Consensus 5 vVvI~Gs~~-~PltR~la~DLeRRGFIV~v~~~~~ed~~~ve~e~ 48 (299)
T PF08643_consen 5 VVVIAGSPH-DPLTRSLALDLERRGFIVYVTVSSAEDEKYVESED 48 (299)
T ss_pred EEEEECCCC-CccHHHHHHHHhhCCeEEEEEeCCHHHHHHHHhcc
Confidence 356678755 69999999999999999988 7778888888885
No 371
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=41.86 E-value=26 Score=34.76 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=18.5
Q ss_pred hhHHHHHHHhhcCCcEEEeec
Q 007475 476 KVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 476 k~~~aia~~lc~~~~~v~~~~ 496 (602)
|.|.+||.++++||..|.+++
T Consensus 30 ~~G~~lA~~~~~~Ga~V~li~ 50 (185)
T PF04127_consen 30 KMGAALAEEAARRGAEVTLIH 50 (185)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 999999999999999999933
No 372
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=41.74 E-value=33 Score=33.13 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=31.1
Q ss_pred hhhhhcC--CccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 453 AVVVNSL--PKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 453 a~vl~~i--p~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
-.+.+.+ +++-+=++|+|..+--=-|-++|.+|+++|++|.+
T Consensus 14 ~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v 57 (169)
T PF03853_consen 14 ELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTV 57 (169)
T ss_dssp HHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEE
Confidence 3556667 77777889998874223678899999999999998
No 373
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; an
Probab=41.59 E-value=1.2e+02 Score=30.00 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=11.6
Q ss_pred hhhhhhcccCCccCcCC
Q 007475 153 HYLYSRYHSHHHSSVVT 169 (602)
Q Consensus 153 ~~LY~riHkvHHss~~p 169 (602)
...++.-|..||..++-
T Consensus 48 ~~~w~~~H~~HH~~tn~ 64 (204)
T cd03506 48 AGWWKNKHNVHHAYTNI 64 (204)
T ss_pred HHHHHHHHhhhcCcCCC
Confidence 33456678888888753
No 374
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=41.58 E-value=26 Score=36.58 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=26.4
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEeechhH
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVATICKDD 499 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~~ 499 (602)
.|++.|.|+ - ||.+|..|+++|++|+.....+
T Consensus 2 ~ILvlGGT~--e-gr~la~~L~~~g~~v~~s~~t~ 33 (256)
T TIGR00715 2 TVLLMGGTV--D-SRAIAKGLIAQGIEILVTVTTS 33 (256)
T ss_pred eEEEEechH--H-HHHHHHHHHhCCCeEEEEEccC
Confidence 589999994 3 9999999999999999833333
No 375
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=41.56 E-value=35 Score=34.04 Aligned_cols=41 Identities=27% Similarity=0.307 Sum_probs=33.3
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEeechhHHHHHHh
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVATICKDDYEKLKL 505 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~~~~~~~~ 505 (602)
.-+.|++.|+. ++|...|..|.+.|.+|.+++++.-+.+++
T Consensus 9 ~~k~vLVIGgG---~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~ 49 (202)
T PRK06718 9 SNKRVVIVGGG---KVAGRRAITLLKYGAHIVVISPELTENLVK 49 (202)
T ss_pred CCCEEEEECCC---HHHHHHHHHHHHCCCeEEEEcCCCCHHHHH
Confidence 44689999998 999999999999999999977664444433
No 376
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=41.31 E-value=35 Score=27.92 Aligned_cols=68 Identities=15% Similarity=0.212 Sum_probs=42.2
Q ss_pred eCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEeechhHHHHHHhcCchhhhccceec
Q 007475 446 DGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVATICKDDYEKLKLRIPVEAQHNLVLS 518 (602)
Q Consensus 446 ~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~ 518 (602)
-|-.+.-+++-+. ++ .++||++-... ++-...+...+.++|++|...+++.+++|-.. ...|.-+..+
T Consensus 3 eG~~~V~eaL~~~-~~-i~~l~~~~~~~-~~~~~~i~~~~~~~~i~v~~v~~~~l~~ls~~--~~hQGv~a~v 70 (76)
T PF08032_consen 3 EGRHAVEEALKSG-PR-IKKLFVTEEKA-DKRIKEILKLAKKKGIPVYEVSKKVLDKLSDT--ENHQGVVAVV 70 (76)
T ss_dssp ESHHHHHHHHHCT-GG-EEEEEEETT----CCTHHHHHHHHHCT-EEEEE-HHHHHHCTTT--SS-TTEEEEE
T ss_pred EEHHHHHHHHcCC-CC-ccEEEEEcCcc-chhHHHHHHHHHHcCCeEEEeCHHHHHHHcCC--CCCCeEEEEE
Confidence 3444444555554 34 89999997732 35457888888899999999999999977653 4444433333
No 377
>cd07101 ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 2-like. Succinate-semialdehyde dehydrogenase 2 (SSADH2) and similar proteins are in this CD. SSADH1 (GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde to succinate. SSADH activity in Mycobacterium tuberculosis is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1 was shown to be much higher than that of GabD2, and GabD2 (SSADH2) is likely to serve physiologically as a dehydrogenase for a different aldehyde(s).
Probab=41.31 E-value=40 Score=37.42 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=34.5
Q ss_pred CCCccEEEeeCCccc-hhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 437 PNKLKIKVVDGSSLA-AAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 437 p~~l~vrvv~g~tl~-aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
|+ =-+.+|.|..-. ...++.. .+-|.+||++ ++|+.|+....++.++|.+
T Consensus 174 P~-gv~~~v~g~~~~~~~~l~~~----~~~V~fTGs~---~~g~~i~~~aa~~~~~~~l 224 (454)
T cd07101 174 PR-DLWQVVTGPGSEVGGAIVDN----ADYVMFTGST---ATGRVVAERAGRRLIGCSL 224 (454)
T ss_pred CC-CcEEEEeCCcHHHHHHHHhC----CCEEEEECCH---HHHHHHHHHHHhcCCcEEE
Confidence 44 347788875433 2333332 3569999998 8999999988888777766
No 378
>cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like. Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.
Probab=41.21 E-value=47 Score=36.87 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=30.4
Q ss_pred cEEEeeCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 441 KIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 441 ~vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
-+.+|+|..-.+.-.|-+- ++++-|++||++ ++|+.|+....++..+|.+
T Consensus 179 vv~~v~g~~~~~~~~L~~~-~~v~~V~fTGs~---~~g~~v~~~aa~~~~~~~l 228 (456)
T cd07110 179 VLNVVTGTGDEAGAPLAAH-PGIDKISFTGST---ATGSQVMQAAAQDIKPVSL 228 (456)
T ss_pred cEEEEecCchHHHHHHhcC-CCCCEEEEECCH---HHHHHHHHHHhhcCCeEEE
Confidence 3667776543222111111 367778888887 7888888776676667655
No 379
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=41.04 E-value=59 Score=34.71 Aligned_cols=95 Identities=22% Similarity=0.277 Sum_probs=67.5
Q ss_pred HHHhcCCeEEeec----cccccccc-------cccccchhccCCC---------CccEEEeeCCc--------cc-hhhh
Q 007475 405 EADAKGVKVISLG----LLNQGEEL-------NRNGEIYLERQPN---------KLKIKVVDGSS--------LA-AAVV 455 (602)
Q Consensus 405 ~a~~~g~kv~sl~----~lnk~~~l-------n~~g~l~~~~~p~---------~l~vrvv~g~t--------l~-aa~v 455 (602)
.|.+.|.+|+.++ .++|+|++ ++.+-+.|-|||+ ..+|=|+++-+ |+ ...+
T Consensus 64 A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~~l~~~~D~iv~R~~~~~~~~~~a~~~~vPVINag~~~~HPtQaL~Dl~Ti 143 (304)
T PRK00779 64 GMAQLGGHAIFLSPRDTQLGRGEPIEDTARVLSRYVDAIMIRTFEHETLEELAEYSTVPVINGLTDLSHPCQILADLLTI 143 (304)
T ss_pred HHHHcCCcEEEECcccccCCCCcCHHHHHHHHHHhCCEEEEcCCChhHHHHHHHhCCCCEEeCCCCCCChHHHHHHHHHH
Confidence 4678999999985 35677764 5567777889987 45677888754 11 1223
Q ss_pred hhcCCc-cCceEEEeccccchhhHHHHHHHhhcCCcEEEeechhHHH
Q 007475 456 VNSLPK-TTAHVLLRGTVTANKVANAVASSLCQMGIKVATICKDDYE 501 (602)
Q Consensus 456 l~~ip~-~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~~~~ 501 (602)
..+... +-..|-..|.. +.+++..+..|.+-|++|.+.+.+.++
T Consensus 144 ~e~~g~l~gl~i~~vGd~--~~v~~Sl~~~l~~~g~~v~~~~P~~~~ 188 (304)
T PRK00779 144 YEHRGSLKGLKVAWVGDG--NNVANSLLLAAALLGFDLRVATPKGYE 188 (304)
T ss_pred HHHhCCcCCcEEEEEeCC--CccHHHHHHHHHHcCCEEEEECCcccC
Confidence 333332 22368889996 589999999999999999997777664
No 380
>PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional
Probab=40.79 E-value=46 Score=37.61 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=36.2
Q ss_pred CCCccEEEeeCCccch-hhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 437 PNKLKIKVVDGSSLAA-AVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 437 p~~l~vrvv~g~tl~a-a~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
|+ =-+.+|+|+.-.+ ..++. -++++-|.+||++ ++|+.|+....++..+|.+
T Consensus 202 P~-gvv~vv~g~~~~~~~~l~~--~~~v~~v~FTGS~---~~G~~i~~~aa~~l~~~~l 254 (482)
T PRK11241 202 PA-GVFNVVTGSAGAVGGELTS--NPLVRKLSFTGST---EIGRQLMEQCAKDIKKVSL 254 (482)
T ss_pred Cc-ccEEEEecCCchhHHHHhc--CCCCCEEEEECcH---HHHHHHHHHHHhcCCcEEE
Confidence 54 4477888764332 22222 3478889999988 8999999987777777765
No 381
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=40.76 E-value=35 Score=31.25 Aligned_cols=28 Identities=18% Similarity=0.358 Sum_probs=25.0
Q ss_pred eEEEeccccchhhHHHHHHHhhc-CCcEEEe
Q 007475 465 HVLLRGTVTANKVANAVASSLCQ-MGIKVAT 494 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~-~~~~v~~ 494 (602)
.|.+.|.++ |+|++|+..+-+ +|.++.-
T Consensus 2 rV~i~G~~G--rMG~~i~~~i~~~~~~~lv~ 30 (124)
T PF01113_consen 2 RVGIVGASG--RMGRAIAEAILESPGFELVG 30 (124)
T ss_dssp EEEEETTTS--HHHHHHHHHHHHSTTEEEEE
T ss_pred EEEEECCCC--HHHHHHHHHHHhcCCcEEEE
Confidence 478999987 999999999997 9999776
No 382
>cd07134 ALDH_AlkH-like Pseudomonas putida Aldehyde dehydrogenase AlkH-like. Aldehyde dehydrogenase AlkH (locus name P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows Pseudomonas putida to metabolize alkanes and the aldehyde dehydrogenase AldX of Bacillus subtilis (locus P46329, EC=1.2.1.3), and similar sequences, are present in this CD.
Probab=40.32 E-value=44 Score=37.04 Aligned_cols=47 Identities=19% Similarity=0.348 Sum_probs=32.8
Q ss_pred EEEeeCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 442 IKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 442 vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+.+|+|+.-+++.+++. | ++.|.+||.+ ++|+.|+....++..+|.+
T Consensus 159 v~~v~g~~~~~~~l~~~-~--v~~v~ftGs~---~~g~~i~~~aa~~~~~~~l 205 (433)
T cd07134 159 VAVFEGDAEVAQALLEL-P--FDHIFFTGSP---AVGKIVMAAAAKHLASVTL 205 (433)
T ss_pred EEEEeCChhHHHHHHhC-C--CCEEEEECCh---HHHHHHHHHHHhcCCcEEE
Confidence 66777765555555553 3 7788888887 7888888876666666655
No 383
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=40.29 E-value=24 Score=35.98 Aligned_cols=28 Identities=14% Similarity=0.410 Sum_probs=24.5
Q ss_pred EEEeccccchhhHHHHHHHhhcCCc-EEEee
Q 007475 466 VLLRGTVTANKVANAVASSLCQMGI-KVATI 495 (602)
Q Consensus 466 v~l~g~~~~~k~~~aia~~lc~~~~-~v~~~ 495 (602)
|++||+++ =||+++|..|.++|. .|+.+
T Consensus 1 ilItGatG--~iG~~l~~~L~~~g~~~v~~~ 29 (314)
T TIGR02197 1 IIVTGGAG--FIGSNLVKALNERGITDILVV 29 (314)
T ss_pred CEEeCCcc--hhhHHHHHHHHHcCCceEEEE
Confidence 68999996 799999999999997 57663
No 384
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=39.85 E-value=78 Score=31.43 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=32.0
Q ss_pred cCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEe--echhHHHHH
Q 007475 458 SLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT--ICKDDYEKL 503 (602)
Q Consensus 458 ~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~--~~~~~~~~~ 503 (602)
.++++ +.|++.|+.+ =+|.+++..+..+|++|.+ .+.++-+.+
T Consensus 133 ~~~~g-~~vlI~g~~g--~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~ 177 (320)
T cd05286 133 PVKPG-DTVLVHAAAG--GVGLLLTQWAKALGATVIGTVSSEEKAELA 177 (320)
T ss_pred CCCCC-CEEEEEcCCc--hHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 34444 6799999874 6899999999999999988 344555555
No 385
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=39.82 E-value=29 Score=38.83 Aligned_cols=53 Identities=26% Similarity=0.318 Sum_probs=41.7
Q ss_pred ccEEEeeCCccchhhhhhcC-CccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 440 LKIKVVDGSSLAAAVVVNSL-PKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 440 l~vrvv~g~tl~aa~vl~~i-p~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
-+.+.++|.+-.++|=.-.- +...+.||.+|+|+ |+||=|+.-|-+||..|..
T Consensus 55 ~~~~~~~~~~~e~~v~~~~~~~~~~~~VlVvGatG--~vG~~iv~~llkrgf~vra 108 (411)
T KOG1203|consen 55 TPISPVTGTTSEAEVSPPNNNSKKPTTVLVVGATG--KVGRRIVKILLKRGFSVRA 108 (411)
T ss_pred CCCCccccccceeeeccCCCCCCCCCeEEEecCCC--chhHHHHHHHHHCCCeeee
Confidence 34567777777776543222 34777899999998 9999999999999999988
No 386
>cd07119 ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like. Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde.
Probab=39.82 E-value=47 Score=37.18 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=16.8
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+++-|++||++ ++|+.|+....++..+|.+
T Consensus 213 ~v~~V~fTGs~---~~g~~i~~~aa~~~~~~~l 242 (482)
T cd07119 213 DVDLVSFTGGT---ATGRSIMRAAAGNVKKVAL 242 (482)
T ss_pred CCCEEEEECcH---HHHHHHHHHHHhcCCcEEE
Confidence 45556666665 5666666655554444443
No 387
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=39.67 E-value=34 Score=37.32 Aligned_cols=91 Identities=15% Similarity=0.178 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHHHhcCCeEEeeccccccccccccccchhccCCCCccEEEe----eC-Cccchhhh--hhcCCc-cCc
Q 007475 393 EAINSLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIKVV----DG-SSLAAAVV--VNSLPK-TTA 464 (602)
Q Consensus 393 ~~in~~ie~ai~~a~~~g~kv~sl~~lnk~~~ln~~g~l~~~~~p~~l~vrvv----~g-~tl~aa~v--l~~ip~-~~~ 464 (602)
.-|=.|+.+|...|.+.|. -+..||. ||-+.---..|||-- .| -|++.|+| ...++. +-+
T Consensus 108 ~QIlGQVK~Ay~~A~~~g~---------~g~~L~~---lf~~A~~~aKrVRteT~I~~~~vSv~s~av~~~~~~~~l~~k 175 (338)
T PRK00676 108 TEIQGQVKRAYLKAARERK---------LPFALHF---LFQKALKEGKVFRSKGGAPYAEVTIESVVQQELRRRQKSKKA 175 (338)
T ss_pred HHHHHHHHHHHHHHHHcCC---------chHHHHH---HHHHHHHHHHHHhhhcCCCCCCcCHHHHHHHHHHHhCCccCC
Confidence 3466778888888888775 2223333 443311001233322 22 23433322 233432 668
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcE-EEeechh
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIK-VATICKD 498 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~-v~~~~~~ 498 (602)
.|++.|+. ++|+.+|.+|.++|++ |.+.++.
T Consensus 176 ~vLvIGaG---em~~l~a~~L~~~g~~~i~v~nRt 207 (338)
T PRK00676 176 SLLFIGYS---EINRKVAYYLQRQGYSRITFCSRQ 207 (338)
T ss_pred EEEEEccc---HHHHHHHHHHHHcCCCEEEEEcCC
Confidence 99999997 9999999999999975 6664443
No 388
>cd07116 ALDH_ACDHII-AcoD Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.
Probab=39.63 E-value=51 Score=36.95 Aligned_cols=50 Identities=24% Similarity=0.263 Sum_probs=34.0
Q ss_pred cEEEeeCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 441 KIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 441 ~vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
-+.+|.|+.-.++..|-+ -++++-|.+||++ ++|+.|+.+..++.++|++
T Consensus 194 vv~~v~g~~~~~~~~L~~-~~~v~~V~fTGS~---~~G~~i~~~aa~~~~p~~l 243 (479)
T cd07116 194 VVNVVNGFGLEAGKPLAS-SKRIAKVAFTGET---TTGRLIMQYASENIIPVTL 243 (479)
T ss_pred cEEEEecCchhHHHHHhc-CCCcCEEEEECCH---HHHHHHHHHHHcCCCeEEE
Confidence 366777643222211111 2348899999999 9999999998888778765
No 389
>PRK06940 short chain dehydrogenase; Provisional
Probab=39.49 E-value=47 Score=33.86 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=24.2
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
|-|++||+ + =+|+++|..|. +|.+|++.++
T Consensus 3 k~~lItGa-~--gIG~~la~~l~-~G~~Vv~~~r 32 (275)
T PRK06940 3 EVVVVIGA-G--GIGQAIARRVG-AGKKVLLADY 32 (275)
T ss_pred CEEEEECC-C--hHHHHHHHHHh-CCCEEEEEeC
Confidence 34688997 3 69999999996 8999998543
No 390
>PLN02467 betaine aldehyde dehydrogenase
Probab=39.42 E-value=49 Score=37.56 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=35.1
Q ss_pred cEEEeeCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 441 KIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 441 ~vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
-+.+|.|+.-.++.-|- -.++++-|.+||++ .+|++|+....++..+|.+
T Consensus 210 vv~~v~g~~~~~~~~L~-~~~~v~~v~fTGs~---~~g~~v~~~aa~~~~~~~l 259 (503)
T PLN02467 210 VLNVVTGLGTEAGAPLA-SHPGVDKIAFTGST---ATGRKIMTAAAQMVKPVSL 259 (503)
T ss_pred eEEEEeCCchhHHHHHh-cCCCCCEEEEECCH---HHHHHHHHHHhccCCcEEE
Confidence 37778775433322221 13468889999998 8999999988888788776
No 391
>cd07114 ALDH_DhaS Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like. Uncharacterized aldehyde dehydrogenase from Candidatus pelagibacter (DhaS) and other related sequences are present in this CD.
Probab=39.11 E-value=52 Score=36.55 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=18.5
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+++-|.+||.+ ++|++|+....+++.+|.+
T Consensus 198 ~i~~V~ftGs~---~~g~~v~~~aa~~~~~~~l 227 (457)
T cd07114 198 LVAKIAFTGGT---ETGRHIARAAAENLAPVTL 227 (457)
T ss_pred CCCEEEEECCH---HHHHHHHHHHHhcCCeEEE
Confidence 45566666665 6666666666555555554
No 392
>cd07117 ALDH_StaphAldA1 Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like. Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.
Probab=38.99 E-value=50 Score=37.14 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=22.6
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+++-|.+||++ .+|+.|+....++..++.+
T Consensus 214 ~v~~v~fTGs~---~~g~~i~~~aa~~~~~~~l 243 (475)
T cd07117 214 GLDKLAFTGST---EVGRDVAIAAAKKLIPATL 243 (475)
T ss_pred CCCEEEEECcH---HHHHHHHHHHhccCCcEEE
Confidence 67778888877 7788888877777777655
No 393
>cd07086 ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD+-dependent, alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1, ALDH7B or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), and other similar sequences, such as the uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105).
Probab=38.90 E-value=48 Score=37.17 Aligned_cols=31 Identities=16% Similarity=0.165 Sum_probs=21.7
Q ss_pred ccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 461 KTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 461 ~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
++++-|.+||++ .+|++|+.+..++..+|.+
T Consensus 214 ~~vd~v~fTGs~---~~g~~i~~~aa~~~~~~~l 244 (478)
T cd07086 214 PRVPLVSFTGST---EVGRRVGETVARRFGRVLL 244 (478)
T ss_pred CCCCEEEEECcH---HHHHHHHHHHhccCCcEEe
Confidence 456677778777 7777777777666666655
No 394
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=38.86 E-value=39 Score=36.34 Aligned_cols=79 Identities=19% Similarity=0.362 Sum_probs=56.8
Q ss_pred cCCeEEeecc----ccccccc-cccccchhccCCCCccEEEee-CCccchhhhhhcCCccCceEEEeccccchhhHHHHH
Q 007475 409 KGVKVISLGL----LNQGEEL-NRNGEIYLERQPNKLKIKVVD-GSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVA 482 (602)
Q Consensus 409 ~g~kv~sl~~----lnk~~~l-n~~g~l~~~~~p~~l~vrvv~-g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia 482 (602)
-|+|+|.|+. +.+.+++ .+.|-.-|+-+.. +||.|+. ||-+. .|... +|-+.+|+
T Consensus 125 A~~riiPl~v~~~~~~~a~~~~~~~gi~~V~v~r~-~rv~II~TG~Ev~-----------------~G~i~-D~~~~~l~ 185 (312)
T cd03522 125 ATVKIIPLAVPEALVERAEALARDGPLLRVAPFRP-LRVGLIVTGSEVY-----------------GGRIE-DKFGPVLR 185 (312)
T ss_pred EEEEEeeeecCHHHHHHHHHHHHhCCCcEEEecCC-CEEEEEEcCCcCC-----------------CCcEE-EhHHHHHH
Confidence 3678888875 5666655 4567788888888 8899885 66542 33332 57789999
Q ss_pred HHhhcCCcEEEe--echhHHHHHHhc
Q 007475 483 SSLCQMGIKVAT--ICKDDYEKLKLR 506 (602)
Q Consensus 483 ~~lc~~~~~v~~--~~~~~~~~~~~~ 506 (602)
..|-+.|.+|.- .-.|+.+.|++.
T Consensus 186 ~~L~~~G~~v~~~~iv~Dd~~~I~~a 211 (312)
T cd03522 186 ARLAALGVELVEQVIVPHDEAAIAAA 211 (312)
T ss_pred HHHHHCCCEEEEEEEcCCCHHHHHHH
Confidence 999999999876 456777777765
No 395
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=38.76 E-value=50 Score=34.27 Aligned_cols=38 Identities=21% Similarity=0.213 Sum_probs=30.6
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEe--echhHHHHH
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVAT--ICKDDYEKL 503 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~--~~~~~~~~~ 503 (602)
.++|-+.|+. -+|.+||..|+++|.+|.+ .+.+.-+++
T Consensus 4 ~~kI~vIGaG---~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 43 (292)
T PRK07530 4 IKKVGVIGAG---QMGNGIAHVCALAGYDVLLNDVSADRLEAG 43 (292)
T ss_pred CCEEEEECCc---HHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 3578899998 8999999999999999999 344444443
No 396
>TIGR01804 BADH glycine betaine aldehyde dehydrogenase. Betaine aldehyde dehydrogenase is a member of the aldehyde dehydrogenase family (pfam00171).
Probab=38.60 E-value=50 Score=36.84 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=30.6
Q ss_pred cEEEeeCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 441 KIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 441 ~vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
-+.+|+|..-.++..|-+- ++++-|++||++ ++|+.|+....++..++.+
T Consensus 192 v~~~v~g~~~~~~~~L~~~-~~v~~V~fTGs~---~~g~~v~~~a~~~l~~~~l 241 (467)
T TIGR01804 192 VFNVVLGKGAEVGEPLVNH-KDVAKVSFTGGV---PTGKKIMAAAADHLKHVTM 241 (467)
T ss_pred cEEEEeCCcHHHHHHHhcC-CCCCEEEEECcH---HHHHHHHHHHHhcCCcEEE
Confidence 3566666532222222222 267788888888 8888888877666556554
No 397
>PLN02996 fatty acyl-CoA reductase
Probab=38.56 E-value=45 Score=37.70 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=21.2
Q ss_pred CceEEEeccccchhhHHHHHHHhhcC
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQM 488 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~ 488 (602)
-|.||+||+|+ =||..++..|.+.
T Consensus 11 ~k~VlvTGaTG--FlG~~ll~~LL~~ 34 (491)
T PLN02996 11 NKTILVTGATG--FLAKIFVEKILRV 34 (491)
T ss_pred CCeEEEeCCCc--HHHHHHHHHHHhh
Confidence 36799999997 9999999998875
No 398
>cd07093 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 8 member A1-like. In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone.
Probab=38.46 E-value=48 Score=36.66 Aligned_cols=30 Identities=7% Similarity=0.051 Sum_probs=18.0
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+++-|++||++ .+|+.|+....+.+.+|.+
T Consensus 196 ~i~~V~ftGs~---~~g~~v~~~aa~~~~~~~l 225 (455)
T cd07093 196 DVDLISFTGET---ATGRTIMRAAAPNLKPVSL 225 (455)
T ss_pred CccEEEEECCH---HHHHHHHHHHhhcccceEe
Confidence 45566666665 6666666665555555544
No 399
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.36 E-value=49 Score=35.26 Aligned_cols=96 Identities=18% Similarity=0.261 Sum_probs=57.6
Q ss_pred chhhhhhcC-----CccCceEEEeccccchhhHHHHHHHhhcCCcEEEeechhHHHHHHhcCchhhhccceecccccccc
Q 007475 451 AAAVVVNSL-----PKTTAHVLLRGTVTANKVANAVASSLCQMGIKVATICKDDYEKLKLRIPVEAQHNLVLSTSYAAHK 525 (602)
Q Consensus 451 ~aa~vl~~i-----p~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 525 (602)
|+++|+.-| +-.-|+|.+.|+.. =||+.+|..|.++|..|.+..+. -..+++.. .+.-+|-
T Consensus 141 Tp~ai~~ll~~~~i~l~Gk~vvVIGrs~--~VG~pla~lL~~~gatVtv~~s~-t~~l~~~~---~~ADIVI-------- 206 (286)
T PRK14175 141 TPLGIMEILKHADIDLEGKNAVVIGRSH--IVGQPVSKLLLQKNASVTILHSR-SKDMASYL---KDADVIV-------- 206 (286)
T ss_pred cHHHHHHHHHHcCCCCCCCEEEEECCCc--hhHHHHHHHHHHCCCeEEEEeCC-chhHHHHH---hhCCEEE--------
Confidence 666665433 45668999999982 49999999999999999993321 01111110 0001111
Q ss_pred ceEEEEcCC--CCHHHhhcCCCCCeeeecccCCCc---CCCCCcccc
Q 007475 526 TKIWLVGDD--LTGKEQARAPKGTIFIPYTQIPPR---KLRKDCFYH 567 (602)
Q Consensus 526 ~k~w~vg~~--~~~~eq~~a~~gt~f~~~~~~pp~---~~r~dc~y~ 567 (602)
=-||+- +++ | +..+|+.++-.. +++. ++-.|+-|-
T Consensus 207 ---sAvg~p~~i~~-~--~vk~gavVIDvG-i~~~~~gkl~GDvd~~ 246 (286)
T PRK14175 207 ---SAVGKPGLVTK-D--VVKEGAVIIDVG-NTPDENGKLKGDVDYD 246 (286)
T ss_pred ---ECCCCCcccCH-H--HcCCCcEEEEcC-CCcCCCCCeecCccHH
Confidence 112222 444 2 467899999988 6762 455777654
No 400
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=38.10 E-value=41 Score=34.95 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=30.6
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEe--echhHHHHHH
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVAT--ICKDDYEKLK 504 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~--~~~~~~~~~~ 504 (602)
.+.|-+.|+. -+|++||..|.++|.+|.+ .+.+.-++++
T Consensus 3 ~~kIaViGaG---~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 43 (287)
T PRK08293 3 IKNVTVAGAG---VLGSQIAFQTAFHGFDVTIYDISDEALEKAK 43 (287)
T ss_pred ccEEEEECCC---HHHHHHHHHHHhcCCeEEEEeCCHHHHHHHH
Confidence 4678888998 7999999999999999999 3444444443
No 401
>PRK13912 nuclease NucT; Provisional
Probab=37.73 E-value=1.3e+02 Score=29.18 Aligned_cols=101 Identities=21% Similarity=0.219 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhcCCeEEeeccccccccccccc--cchhccCCCCccEEEeeCCccchhhhhhcCC-c---cCceEEEec
Q 007475 397 SLIEEAILEADAKGVKVISLGLLNQGEELNRNG--EIYLERQPNKLKIKVVDGSSLAAAVVVNSLP-K---TTAHVLLRG 470 (602)
Q Consensus 397 ~~ie~ai~~a~~~g~kv~sl~~lnk~~~ln~~g--~l~~~~~p~~l~vrvv~g~tl~aa~vl~~ip-~---~~~~v~l~g 470 (602)
+-|-+|+.+|-++||+|==+---.. ..|... .-|..+.|+ .+++..+|......--.+.+- | =..++.++|
T Consensus 59 ~~i~~aL~~Aa~RGV~VrIlld~~~--~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~H~K~~viD~~~~~iG 135 (177)
T PRK13912 59 KDIAKALKSAAKRGVKISIIYDYES--NHNNDQSTIGYLDKYPN-IKVCLLKGLKAKNGKYYGIMHQKVAIIDDKIVVLG 135 (177)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCcc--ccCcchhHHHHHHhCCC-ceEEEecCccccCcccccccceeEEEEcCCEEEEe
Confidence 4588888899999999865532111 111111 125667788 888877765321110000011 1 013567888
Q ss_pred cccchhhHHHHHHHhhcCCcEEEeechhHHHHHHh
Q 007475 471 TVTANKVANAVASSLCQMGIKVATICKDDYEKLKL 505 (602)
Q Consensus 471 ~~~~~k~~~aia~~lc~~~~~v~~~~~~~~~~~~~ 505 (602)
+.+-++ ++ .-..++.-+++.+++-.+++++
T Consensus 136 S~N~t~--~s---~~~N~E~~lii~d~~~~~~~~~ 165 (177)
T PRK13912 136 SANWSK--NA---FENNYEVLLITDDTETILKAKE 165 (177)
T ss_pred CCCCCh--hH---hccCCceEEEECCHHHHHHHHH
Confidence 776333 11 1224555555556555555543
No 402
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=37.72 E-value=40 Score=36.02 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=30.1
Q ss_pred ccCceEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 461 KTTAHVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 461 ~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
+...+|...|+. =.|-+.|.+|.|+|++|+++.+.
T Consensus 4 ~~~~dV~IvGaG---~aGl~~A~~La~~G~~v~liE~~ 38 (392)
T PRK08773 4 RSRRDAVIVGGG---VVGAACALALADAGLSVALVEGR 38 (392)
T ss_pred CCCCCEEEECcC---HHHHHHHHHHhcCCCEEEEEeCC
Confidence 455689999998 78999999999999999996554
No 403
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=37.69 E-value=59 Score=30.86 Aligned_cols=98 Identities=23% Similarity=0.279 Sum_probs=53.2
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEee--chhHHHHHHhcCchhhhccceecccccc--ccceE-EEEcCCCCHH
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATI--CKDDYEKLKLRIPVEAQHNLVLSTSYAA--HKTKI-WLVGDDLTGK 538 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~k~-w~vg~~~~~~ 538 (602)
++|=+.|-. ++|+++|..|-++|.+|... ++++.++++++- ..-..+.++ +.|.+ ++.=..-+.-
T Consensus 2 ~~Ig~IGlG---~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g-------~~~~~s~~e~~~~~dvvi~~v~~~~~v 71 (163)
T PF03446_consen 2 MKIGFIGLG---NMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAG-------AEVADSPAEAAEQADVVILCVPDDDAV 71 (163)
T ss_dssp BEEEEE--S---HHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTT-------EEEESSHHHHHHHBSEEEE-SSSHHHH
T ss_pred CEEEEEchH---HHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhh-------hhhhhhhhhHhhcccceEeecccchhh
Confidence 456777876 99999999999999999994 455666665542 111223333 44433 3321111111
Q ss_pred H--------hhcCCCCCeeeecccCCCc-------CCC-CCcccccCCc
Q 007475 539 E--------QARAPKGTIFIPYTQIPPR-------KLR-KDCFYHSTPA 571 (602)
Q Consensus 539 e--------q~~a~~gt~f~~~~~~pp~-------~~r-~dc~y~~~~a 571 (602)
+ -...++|+.++-.+-..|. +++ +.+.|-+-|=
T Consensus 72 ~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV 120 (163)
T PF03446_consen 72 EAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPV 120 (163)
T ss_dssp HHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEE
T ss_pred hhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeee
Confidence 1 1234799999999887775 122 5566665553
No 404
>cd07131 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like. Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD.
Probab=37.58 E-value=55 Score=36.58 Aligned_cols=50 Identities=16% Similarity=0.225 Sum_probs=28.9
Q ss_pred cEEEeeCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 441 KIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 441 ~vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
-+.+|+|..-.++-.|-+ .++++-|++||++ ++|++|+....+.+.+|.+
T Consensus 194 vv~~v~g~~~~~~~~L~~-~~~vd~V~ftGs~---~~g~~i~~~aa~~~~~~~l 243 (478)
T cd07131 194 VVNVVHGRGEEVGEALVE-HPDVDVVSFTGST---EVGERIGETCARPNKRVAL 243 (478)
T ss_pred cEEEEecCchHHHHHHhc-CCCCCEEEEECcH---HHHHHHHHHHhhcCCcEEE
Confidence 356666644322221222 2257777888877 7777777766666666544
No 405
>PRK08116 hypothetical protein; Validated
Probab=37.57 E-value=49 Score=34.48 Aligned_cols=41 Identities=27% Similarity=0.414 Sum_probs=31.3
Q ss_pred eEEEeccccchh--hHHHHHHHhhcCCcEEEeechhH-HHHHHh
Q 007475 465 HVLLRGTVTANK--VANAVASSLCQMGIKVATICKDD-YEKLKL 505 (602)
Q Consensus 465 ~v~l~g~~~~~k--~~~aia~~lc~~~~~v~~~~~~~-~~~~~~ 505 (602)
-++|.|..+.-| ++.|||.+|+++|.+|+.++-.+ ...++.
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~ 159 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKS 159 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 389999876556 99999999999999998855443 444543
No 406
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=37.55 E-value=39 Score=37.80 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=31.4
Q ss_pred hhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 456 VNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 456 l~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
-.+.++..-+|...|+. =-|.+.|.+|.++|++|+++.+
T Consensus 32 ~~~~~~~~~DViIVGaG---PAG~~aA~~LA~~G~~VlllEr 70 (450)
T PLN00093 32 SKKLSGRKLRVAVIGGG---PAGACAAETLAKGGIETFLIER 70 (450)
T ss_pred CCCcCCCCCeEEEECCC---HHHHHHHHHHHhCCCcEEEEec
Confidence 33445555599999999 6799999999999999999543
No 407
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=37.47 E-value=29 Score=37.43 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=19.5
Q ss_pred hhHHHHHHHhhcCCcEEEeech
Q 007475 476 KVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 476 k~~~aia~~lc~~~~~v~~~~~ 497 (602)
=+..++|.+|-++|.||.++|+
T Consensus 52 P~v~~L~~~L~~~G~~~~IlSR 73 (326)
T PF02606_consen 52 PLVIWLARLLQARGYRPAILSR 73 (326)
T ss_pred HHHHHHHHHHHhcCCceEEEcC
Confidence 5889999999999999999655
No 408
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=37.43 E-value=32 Score=39.98 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=26.2
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
..|++||+++ -||++++.+|+++|++|..
T Consensus 381 mkiLVtGa~G--~iG~~l~~~L~~~g~~v~~ 409 (668)
T PLN02260 381 LKFLIYGRTG--WIGGLLGKLCEKQGIAYEY 409 (668)
T ss_pred ceEEEECCCc--hHHHHHHHHHHhCCCeEEe
Confidence 4699999997 9999999999999999943
No 409
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=37.42 E-value=60 Score=29.79 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=29.9
Q ss_pred EEEeccccchhhHHHHHHHhhcCCcEEEeechh-HHHHHHhc
Q 007475 466 VLLRGTVTANKVANAVASSLCQMGIKVATICKD-DYEKLKLR 506 (602)
Q Consensus 466 v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~-~~~~~~~~ 506 (602)
|.+.|+. =+|..+|-+|++.|.+|.++.+. +++.++++
T Consensus 1 I~I~G~G---aiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~ 39 (151)
T PF02558_consen 1 ILIIGAG---AIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQ 39 (151)
T ss_dssp EEEESTS---HHHHHHHHHHHHTTCEEEEEESHHHHHHHHHH
T ss_pred CEEECcC---HHHHHHHHHHHHCCCceEEEEccccHHhhhhe
Confidence 4566777 48999999999999999995444 47777754
No 410
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=37.34 E-value=78 Score=31.21 Aligned_cols=56 Identities=25% Similarity=0.312 Sum_probs=37.3
Q ss_pred hhccCCCCccEEEeeC-------Cc-cchhhhhhc-CCccCceEEEeccccchhhHHHHHHHhhcCCcE
Q 007475 432 YLERQPNKLKIKVVDG-------SS-LAAAVVVNS-LPKTTAHVLLRGTVTANKVANAVASSLCQMGIK 491 (602)
Q Consensus 432 ~~~~~p~~l~vrvv~g-------~t-l~aa~vl~~-ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~ 491 (602)
+.+++|+ +++.++.. .. -....+... ++.+-.+|+++|.. ...+++..+|.++|+.
T Consensus 154 l~~~~~~-~~~~~~~s~~~~~~~~~g~v~~~~~~~~~~~~~~~v~icGp~---~m~~~~~~~l~~~G~~ 218 (228)
T cd06209 154 LAERLPG-FSFRTVVADPDSWHPRKGYVTDHLEAEDLNDGDVDVYLCGPP---PMVDAVRSWLDEQGIE 218 (228)
T ss_pred HHHhCCC-eEEEEEEcCCCccCCCcCCccHHHHHhhccCCCcEEEEeCCH---HHHHHHHHHHHHcCCC
Confidence 3446788 88776643 11 122233333 44444579999988 8899999999999984
No 411
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=37.19 E-value=38 Score=34.54 Aligned_cols=30 Identities=30% Similarity=0.354 Sum_probs=24.4
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
+|...|+. =.|-+.|++|.|+|++|+++.+
T Consensus 3 dV~IvGaG---~aGl~~A~~L~~~G~~v~i~E~ 32 (356)
T PF01494_consen 3 DVAIVGAG---PAGLAAALALARAGIDVTIIER 32 (356)
T ss_dssp EEEEE--S---HHHHHHHHHHHHTTCEEEEEES
T ss_pred eEEEECCC---HHHHHHHHHHHhcccccccchh
Confidence 68888888 6699999999999999999544
No 412
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=37.09 E-value=53 Score=27.94 Aligned_cols=47 Identities=15% Similarity=0.209 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCCeEEeeccccccccccccccchhccCCCCccEEEeeCC
Q 007475 397 SLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIKVVDGS 448 (602)
Q Consensus 397 ~~ie~ai~~a~~~g~kv~sl~~lnk~~~ln~~g~l~~~~~p~~l~vrvv~g~ 448 (602)
..++++..++.+.|+++.. .....-++|.-+.-++|++.++.+..|+
T Consensus 66 ~d~~~~~~~l~~~G~~~~~-----~~~~~~~~~~~~~~~DPdG~~iEi~~~~ 112 (113)
T cd08345 66 EEFDEYTERLKALGVEMKP-----ERPRVQGEGRSIYFYDPDGHLLELHAGT 112 (113)
T ss_pred HHHHHHHHHHHHcCCccCC-----CccccCCCceEEEEECCCCCEEEEEeCc
Confidence 4688888899999999852 1222234667777799998999888775
No 413
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=37.08 E-value=1.2e+02 Score=29.55 Aligned_cols=40 Identities=23% Similarity=0.178 Sum_probs=30.4
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEe--echhHHHHHH
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVAT--ICKDDYEKLK 504 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~--~~~~~~~~~~ 504 (602)
..+.|+++|+. + +|.+++..+-..|.+|.. .+.++.+.++
T Consensus 134 ~~~~vli~g~~--~-~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 175 (271)
T cd05188 134 PGDTVLVLGAG--G-VGLLAAQLAKAAGARVIVTDRSDEKLELAK 175 (271)
T ss_pred CCCEEEEECCC--H-HHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 34579999988 7 999999988899999988 3334555443
No 414
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=37.06 E-value=29 Score=36.67 Aligned_cols=55 Identities=18% Similarity=0.090 Sum_probs=35.4
Q ss_pred ccccccccccchhccCCCCccEEEeeCCccchhhhhhcCC-ccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 421 QGEELNRNGEIYLERQPNKLKIKVVDGSSLAAAVVVNSLP-KTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 421 k~~~ln~~g~l~~~~~p~~l~vrvv~g~tl~aa~vl~~ip-~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
|.|.+|+.|. -|.|. |+..+.... ++ +..+++..+ .--|+|+|.+-.++|+++.+
T Consensus 44 K~E~~nptGS---------fKdR~-------a~~~l~~a~~~g-~~~vv~aSs--GN~g~a~A~~a~~~g~~~~v 99 (328)
T TIGR00260 44 LELFHNPTLS---------FKDRG-------MAVALTKALELG-NDTVLCAST--GNTGAAAAAYAGKAGVKVVI 99 (328)
T ss_pred hhhccCCchh---------hHhhh-------HHHHHHHHHHcC-CCEEEEeCC--cHHHHHHHHHhccCCCcEEE
Confidence 6677776664 45554 333343333 34 345666544 37899999766699999998
No 415
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=36.99 E-value=73 Score=32.33 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=25.9
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
+++.+.|+. .+|+.+|..|.++|..|+.+
T Consensus 1 m~iiIiG~G---~vG~~va~~L~~~g~~Vv~I 29 (225)
T COG0569 1 MKIIIIGAG---RVGRSVARELSEEGHNVVLI 29 (225)
T ss_pred CEEEEECCc---HHHHHHHHHHHhCCCceEEE
Confidence 467888998 99999999999999999984
No 416
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=36.98 E-value=75 Score=33.95 Aligned_cols=98 Identities=18% Similarity=0.099 Sum_probs=59.1
Q ss_pred HhcCCeEEeeccccccccccccccchhccCCCCc-cEEE-eeCCccch-------hhhhhcC-CccCceEEEeccccchh
Q 007475 407 DAKGVKVISLGLLNQGEELNRNGEIYLERQPNKL-KIKV-VDGSSLAA-------AVVVNSL-PKTTAHVLLRGTVTANK 476 (602)
Q Consensus 407 ~~~g~kv~sl~~lnk~~~ln~~g~l~~~~~p~~l-~vrv-v~g~tl~a-------a~vl~~i-p~~~~~v~l~g~~~~~k 476 (602)
+..|+|+++-=--|....|-..-.+.+--.|+.= -.-+ .||+.||+ |+-...+ +++.+.|.+.|+. .
T Consensus 63 ~~~g~K~~~~~p~N~~~glp~~~g~i~l~d~~tG~~~ai~~d~~~lT~~RTaa~~~laa~~la~~~~~~v~iiGaG---~ 139 (326)
T TIGR02992 63 DGFAIKVSPGFFDNPKLGLPSLNGMMVLLSSRTGLLQALLLDNGYLTDVRTAAAGAVAARHLAREDSSVVAIFGAG---M 139 (326)
T ss_pred CceEEEEecccCCccccCCCceeEEEEEEECCCCCceEEEcCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCC---H
Confidence 3478888885444554444433334444444411 1233 48988864 2222223 6788999999998 8
Q ss_pred hHHHHHHHhh-cCCcE-EEee--chhHHHHHHhcC
Q 007475 477 VANAVASSLC-QMGIK-VATI--CKDDYEKLKLRI 507 (602)
Q Consensus 477 ~~~aia~~lc-~~~~~-v~~~--~~~~~~~~~~~~ 507 (602)
.||+++.+|| .++++ |.+. +.++-+++.++.
T Consensus 140 qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~ 174 (326)
T TIGR02992 140 QARLQLEALTLVRDIRSARIWARDSAKAEALALQL 174 (326)
T ss_pred HHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHH
Confidence 9999999999 58865 5553 334555554443
No 417
>cd07559 ALDH_ACDHII_AcoD-like Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II and Staphylococcus aureus AldA1 (SACOL0154)-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane, as well as, the uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences.
Probab=36.94 E-value=57 Score=36.67 Aligned_cols=53 Identities=21% Similarity=0.213 Sum_probs=37.6
Q ss_pred CCCccEEEeeCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 437 PNKLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 437 p~~l~vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
|+ =-+.+|+|+.-.++..|-+ -++++-|.+||++ .+|+.|+.+..+++++|++
T Consensus 191 P~-gvv~~v~g~~~~~~~~L~~-~~~v~~V~fTGs~---~~g~~i~~~aa~~~~p~~l 243 (480)
T cd07559 191 PK-GVVNVVTGFGSEAGKPLAS-HPRIAKLAFTGST---TVGRLIMQYAAENLIPVTL 243 (480)
T ss_pred Cc-CeEEEEecCchHHHHHHhc-CCCCCEEEEECcH---HHHHHHHHHHhccCCcEEe
Confidence 55 3477888854322222222 3478899999999 9999999998888888864
No 418
>PRK05865 hypothetical protein; Provisional
Probab=36.84 E-value=36 Score=41.47 Aligned_cols=31 Identities=16% Similarity=0.333 Sum_probs=27.7
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
.|++||+++ -+|++++.+|.++|.+|..+++
T Consensus 2 kILVTGATG--fIGs~La~~Ll~~G~~Vv~l~R 32 (854)
T PRK05865 2 RIAVTGASG--VLGRGLTARLLSQGHEVVGIAR 32 (854)
T ss_pred EEEEECCCC--HHHHHHHHHHHHCcCEEEEEEC
Confidence 589999996 9999999999999999987544
No 419
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=36.79 E-value=85 Score=31.32 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=30.9
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEee--chhHHHHHH
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATI--CKDDYEKLK 504 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~--~~~~~~~~~ 504 (602)
.+.|++.|+.+ =+|.+++..+.++|++|.+. +.++.+.++
T Consensus 140 ~~~vli~g~~~--~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 181 (323)
T cd08241 140 GETVLVLGAAG--GVGLAAVQLAKALGARVIAAASSEEKLALAR 181 (323)
T ss_pred CCEEEEEcCCc--hHHHHHHHHHHHhCCEEEEEeCCHHHHHHHH
Confidence 36889999974 89999999999999999883 444555443
No 420
>PRK06921 hypothetical protein; Provisional
Probab=36.77 E-value=60 Score=33.81 Aligned_cols=43 Identities=23% Similarity=0.299 Sum_probs=32.9
Q ss_pred CceEEEeccccchh--hHHHHHHHhhcC-CcEEEeec-hhHHHHHHh
Q 007475 463 TAHVLLRGTVTANK--VANAVASSLCQM-GIKVATIC-KDDYEKLKL 505 (602)
Q Consensus 463 ~~~v~l~g~~~~~k--~~~aia~~lc~~-~~~v~~~~-~~~~~~~~~ 505 (602)
..-++|.|.+|.-| ++.|||..|+++ |+.|+-++ .+.++.++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~ 163 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKD 163 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHH
Confidence 45689999887667 899999999998 99998743 344555544
No 421
>PRK07201 short chain dehydrogenase; Provisional
Probab=36.74 E-value=35 Score=39.11 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=27.0
Q ss_pred eEEEeccccchhhHHHHHHHhh--cCCcEEEeech
Q 007475 465 HVLLRGTVTANKVANAVASSLC--QMGIKVATICK 497 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc--~~~~~v~~~~~ 497 (602)
.|++||+++ -+|++++..|. ++|.+|..+++
T Consensus 2 ~ILVTGatG--fIG~~lv~~Ll~~~~g~~V~~l~R 34 (657)
T PRK07201 2 RYFVTGGTG--FIGRRLVSRLLDRRREATVHVLVR 34 (657)
T ss_pred eEEEeCCcc--HHHHHHHHHHHhcCCCCEEEEEEC
Confidence 489999997 99999999999 68999988443
No 422
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=36.72 E-value=31 Score=35.38 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=28.0
Q ss_pred EEEeccccchh--hHHHHHHHhhcCCcEEEeechhHHHHH
Q 007475 466 VLLRGTVTANK--VANAVASSLCQMGIKVATICKDDYEKL 503 (602)
Q Consensus 466 v~l~g~~~~~k--~~~aia~~lc~~~~~v~~~~~~~~~~~ 503 (602)
++++|+.+.-| ++.++|.+++++|.||++++.|--.++
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~sl 42 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAHSL 42 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcccH
Confidence 57777655444 788999999999999999666543333
No 423
>cd07105 ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-like. Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD.
Probab=36.64 E-value=55 Score=36.13 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=21.5
Q ss_pred ccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 461 KTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 461 ~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
++++-|++||++ ++|++|+....+++.+|.+
T Consensus 179 ~~v~~v~ftGs~---~~g~~i~~~aa~~~~~~~l 209 (432)
T cd07105 179 PAVRKVNFTGST---RVGRIIAETAAKHLKPVLL 209 (432)
T ss_pred CCCCEEEEECCH---HHHHHHHHHHHhcCCeEEE
Confidence 346677777776 7777777776666666655
No 424
>TIGR01238 D1pyr5carbox3 delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain). This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch are the C-terminal domain of the PutA bifunctional proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase.
Probab=36.61 E-value=57 Score=37.05 Aligned_cols=53 Identities=21% Similarity=0.313 Sum_probs=32.9
Q ss_pred CCCccEEEeeCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCC---cEEEe
Q 007475 437 PNKLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMG---IKVAT 494 (602)
Q Consensus 437 p~~l~vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~---~~v~~ 494 (602)
|+ =-+.+|.|..-.++-.|-+- ++++-|.+||++ ++|+.|+..+.++. .+|++
T Consensus 216 P~-gvv~~v~g~~~~~~~~l~~~-~~v~~V~ftGs~---~~g~~v~~~aa~~~~~~~~v~l 271 (500)
T TIGR01238 216 PA-GTIQLLPGRGADVGAALTSD-PRIAGVAFTGST---EVAQLINQTLAQREDAPVPLIA 271 (500)
T ss_pred CC-CceEEEecCcchHHHHHhcC-CCcCeEEEECCH---HHHHHHHHHHhhcccCCceEEE
Confidence 44 34667776542222222222 357888888888 88888888887664 56554
No 425
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=36.52 E-value=58 Score=32.44 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=27.7
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEeec--hhHHHHHH
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVATIC--KDDYEKLK 504 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~--~~~~~~~~ 504 (602)
.|-+.|.++ .+|.++|..|+++|.+|.+.+ .++.+.+.
T Consensus 2 kI~IIGG~G--~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~ 41 (219)
T TIGR01915 2 KIAVLGGTG--DQGKGLALRLAKAGNKIIIGSRDLEKAEEAA 41 (219)
T ss_pred EEEEEcCCC--HHHHHHHHHHHhCCCEEEEEEcCHHHHHHHH
Confidence 366777554 899999999999999998843 33444443
No 426
>cd07097 ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like. Kinetic studies of the Bacillus subtilis ALDH-like ycbD protein, which is involved in d-glucarate/d-galactarate utilization, reveal that it is a NADP+-dependent, alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH). KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. Interestingly, the NADP+-dependent, tetrameric, 2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an enzyme involved in the catabolic pathway for D-arabinose in Sulfolobus solfataricus, also clusters in this group. This CD shows a distant phylogenetic relationship to the Azospirillum brasilense KGSADH-II (-III) group.
Probab=36.49 E-value=56 Score=36.52 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=22.9
Q ss_pred ccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 461 KTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 461 ~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
++++-|.+||++ .+|++|+....++..+|.+
T Consensus 213 ~~v~~v~fTGs~---~~g~~i~~~aa~~~~~~~l 243 (473)
T cd07097 213 PDVDAVSFTGST---AVGRRIAAAAAARGARVQL 243 (473)
T ss_pred CCCCEEEEECcH---HHHHHHHHHHhccCCcEEE
Confidence 367778888877 7788888777777767655
No 427
>PLN02503 fatty acyl-CoA reductase 2
Probab=36.45 E-value=62 Score=37.99 Aligned_cols=26 Identities=12% Similarity=0.233 Sum_probs=22.7
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCC
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMG 489 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~ 489 (602)
.-+.||+||+|+ =||.+++..|.+.+
T Consensus 118 ~~k~VlVTGaTG--FLGk~LlekLLr~~ 143 (605)
T PLN02503 118 RGKNFLITGATG--FLAKVLIEKILRTN 143 (605)
T ss_pred cCCEEEEcCCch--HHHHHHHHHHHHhC
Confidence 567899999997 89999999998754
No 428
>cd07124 ALDH_PutA-P5CDH-RocA Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. The proline catabolic enzymes, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). In this CD, monofunctional enzyme sequences such as seen in the Bacillus subtilis RocA P5CDH are also present. These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis.
Probab=36.38 E-value=55 Score=37.14 Aligned_cols=50 Identities=10% Similarity=0.141 Sum_probs=34.1
Q ss_pred cEEEeeCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhc------CCcEEEe
Q 007475 441 KIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQ------MGIKVAT 494 (602)
Q Consensus 441 ~vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~------~~~~v~~ 494 (602)
-+.+|.|..-.++-.|-+-| +++-|.+||++ ++|++|+....+ +..+|++
T Consensus 225 vv~vv~g~~~~~~~~L~~~~-~v~~V~fTGs~---~~g~~i~~~aa~~~~~~~~l~~~~l 280 (512)
T cd07124 225 VVNFLPGPGEEVGDYLVEHP-DVRFIAFTGSR---EVGLRIYERAAKVQPGQKWLKRVIA 280 (512)
T ss_pred ceEEeccCchHHHHHHhcCC-CCCEEEEeCch---HHHHHHHHHHhcccccccCCCcEEE
Confidence 46677775433322232223 68889999999 899999998876 4667765
No 429
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=36.24 E-value=98 Score=38.01 Aligned_cols=125 Identities=16% Similarity=0.182 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhcCCeEEeecccccc-ccccccccchhccCCCCccEEEeeCCccchhhhhhcCC-------------cc
Q 007475 397 SLIEEAILEADAKGVKVISLGLLNQG-EELNRNGEIYLERQPNKLKIKVVDGSSLAAAVVVNSLP-------------KT 462 (602)
Q Consensus 397 ~~ie~ai~~a~~~g~kv~sl~~lnk~-~~ln~~g~l~~~~~p~~l~vrvv~g~tl~aa~vl~~ip-------------~~ 462 (602)
+.|++++.+-.+.|-+|+++|--+-. ++.+... ..+ ++-++.+.+.+..-| .|
T Consensus 529 ~~i~~~~~~~a~~G~Rvl~~A~~~~~~~~~~~~~------~~e-------~~l~~lGli~~~Dplr~~~~~aI~~l~~aG 595 (941)
T TIGR01517 529 DRCADVIEPLASDALRTICLAYRDFAPEEFPRKD------YPN-------GGLTLIGVVGIKDPLRPGVREAVQECQRAG 595 (941)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEecCcccccccc------ccc-------cCcEEEEEeeccCCCchhHHHHHHHHHHCC
Confidence 45777777777899999999964311 1111000 000 111233333332222 26
Q ss_pred CceEEEeccccchhhHHHHHHHhh--cCCcEEEe------echhHHHHHHh------cCchhhhccceeccccccccceE
Q 007475 463 TAHVLLRGTVTANKVANAVASSLC--QMGIKVAT------ICKDDYEKLKL------RIPVEAQHNLVLSTSYAAHKTKI 528 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc--~~~~~v~~------~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~k~ 528 (602)
.+=+.+||.. -.-+++||..+- .++-.|+. ++.++++++-+ ++.+|.+..+ +..+|++..+|
T Consensus 596 I~v~miTGD~--~~tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe~K~~i--V~~lq~~g~vV 671 (941)
T TIGR01517 596 ITVRMVTGDN--IDTAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSSPLDKQLL--VLMLKDMGEVV 671 (941)
T ss_pred CEEEEECCCC--hHHHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEECCHHHHHHH--HHHHHHCCCEE
Confidence 6677788887 367777777665 22333332 12333333322 2233333333 33456656688
Q ss_pred EEEcCCCCHH
Q 007475 529 WLVGDDLTGK 538 (602)
Q Consensus 529 w~vg~~~~~~ 538 (602)
=.+||+..+.
T Consensus 672 am~GDGvNDa 681 (941)
T TIGR01517 672 AVTGDGTNDA 681 (941)
T ss_pred EEECCCCchH
Confidence 8999999874
No 430
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=36.21 E-value=43 Score=31.40 Aligned_cols=80 Identities=18% Similarity=0.241 Sum_probs=42.4
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEe-echhH--HHHHHhcCchhhhccceecccccc--ccceEEEE---cCCCC
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVAT-ICKDD--YEKLKLRIPVEAQHNLVLSTSYAA--HKTKIWLV---GDDLT 536 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~-~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~--~~~k~w~v---g~~~~ 536 (602)
.|=+.|+. |||++++.+|-+.|..|.- .++.+ -++...+.+... ..++++ ..+-++++ .|.+.
T Consensus 12 ~I~iIGaG---rVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~------~~~~~~~~~~aDlv~iavpDdaI~ 82 (127)
T PF10727_consen 12 KIGIIGAG---RVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGA------ILDLEEILRDADLVFIAVPDDAIA 82 (127)
T ss_dssp EEEEECTS---CCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----------TTGGGCC-SEEEE-S-CCHHH
T ss_pred EEEEECCC---HHHHHHHHHHHHCCCeEEEEEeCCccccccccccccccc------ccccccccccCCEEEEEechHHHH
Confidence 56778887 9999999999999999877 34332 333333333221 123333 44556666 44444
Q ss_pred HHH-hhcC----CCCCeeeecc
Q 007475 537 GKE-QARA----PKGTIFIPYT 553 (602)
Q Consensus 537 ~~e-q~~a----~~gt~f~~~~ 553 (602)
+-- |... .+|+.+...|
T Consensus 83 ~va~~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 83 EVAEQLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp HHHHHHHCC--S-TT-EEEES-
T ss_pred HHHHHHHHhccCCCCcEEEECC
Confidence 332 3322 2566666555
No 431
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=36.05 E-value=40 Score=34.95 Aligned_cols=95 Identities=24% Similarity=0.308 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcCCe--EEeecccccccc-ccccccchhccCCCCccEEEee----CCccchhhhhhcCC-ccCceEEEec
Q 007475 399 IEEAILEADAKGVK--VISLGLLNQGEE-LNRNGEIYLERQPNKLKIKVVD----GSSLAAAVVVNSLP-KTTAHVLLRG 470 (602)
Q Consensus 399 ie~ai~~a~~~g~k--v~sl~~lnk~~~-ln~~g~l~~~~~p~~l~vrvv~----g~tl~aa~vl~~ip-~~~~~v~l~g 470 (602)
+++++.+..+.|++ |+++|. ++-- .+++ +.+ .-|- .++++|| |++.+|+.+.--+- .+.+|
T Consensus 203 ~~~~~~~~~~~g~~~vvvT~G~--~G~~~~~~~-~~~--~~~~-~~v~vvDttGAGDaF~Agfi~~l~~g~~~~~----- 271 (309)
T PRK13508 203 LKEVLQQPLFEGIEWIIVSLGA--DGAFAKHND-TFY--KVDI-PKIEVVNPVGSGDSTVAGIASGLLHQEDDAD----- 271 (309)
T ss_pred HHHHHHHHHHcCCCEEEEecCC--CceEEEeCC-ceE--EEeC-CCccccCCcChhHHHHHHHHHHHHcCCCHHH-----
Confidence 34444443355765 467775 2221 2322 222 2255 6788999 99999988765331 11111
Q ss_pred cccchhhHHHHHHHhhcCCcEEEeechhHHHHHHhcCc
Q 007475 471 TVTANKVANAVASSLCQMGIKVATICKDDYEKLKLRIP 508 (602)
Q Consensus 471 ~~~~~k~~~aia~~lc~~~~~v~~~~~~~~~~~~~~~~ 508 (602)
+ -|.|.|.|..-|++-..+.. ++++++.+.+++.
T Consensus 272 a---l~~a~a~aa~~~~~~~~~~~-~~~~~~~~~~~i~ 305 (309)
T PRK13508 272 L---LKKANVLGMLNAQEKQTGHV-NMANYDELYNQIE 305 (309)
T ss_pred H---HHHHHHHHHHHhcCcCcCCC-CHHHHHHHHhceE
Confidence 2 38999999999977777766 8888888877643
No 432
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=35.99 E-value=43 Score=34.17 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=27.4
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEeechhHH
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVATICKDDY 500 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~~~ 500 (602)
+|...|+. =.|.++|.+|.|+|.+|+++.++..
T Consensus 1 DvvIIGaG---i~G~~~A~~La~~G~~V~l~e~~~~ 33 (358)
T PF01266_consen 1 DVVIIGAG---IAGLSTAYELARRGHSVTLLERGDI 33 (358)
T ss_dssp EEEEECTS---HHHHHHHHHHHHTTSEEEEEESSST
T ss_pred CEEEECcC---HHHHHHHHHHHHCCCeEEEEeeccc
Confidence 46778887 6899999999999999999655533
No 433
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=35.96 E-value=31 Score=33.47 Aligned_cols=63 Identities=21% Similarity=0.322 Sum_probs=46.8
Q ss_pred EEeeCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcC--CcEEEe-----echhHHHHHHhcCc
Q 007475 443 KVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQM--GIKVAT-----ICKDDYEKLKLRIP 508 (602)
Q Consensus 443 rvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~--~~~v~~-----~~~~~~~~~~~~~~ 508 (602)
.-|+|+.|+-++.= ...+.-+.|||.|++ ..+...++..|.++ |++|+- .++++.+++..++.
T Consensus 29 ~rv~g~dl~~~l~~-~~~~~~~~ifllG~~--~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~ 98 (172)
T PF03808_consen 29 ERVTGSDLFPDLLR-RAEQRGKRIFLLGGS--EEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRIN 98 (172)
T ss_pred cccCHHHHHHHHHH-HHHHcCCeEEEEeCC--HHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHH
Confidence 67899998887655 555555699999999 59999999999987 899986 23455555555533
No 434
>cd07102 ALDH_EDX86601 Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (locus EDX86601) and other similar sequences, are present in this CD.
Probab=35.95 E-value=62 Score=35.79 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=32.0
Q ss_pred cEEEeeCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 441 KIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 441 ~vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
-+.+|+|++-++..++.. ++++-|.+||++ .+|+.|+.+..++-.+|.+
T Consensus 175 ~~~~v~g~~~~~~~L~~~--~~v~~V~fTGs~---~~g~~v~~~a~~~~~~v~l 223 (452)
T cd07102 175 VFQVLHLSHETSAALIAD--PRIDHVSFTGSV---AGGRAIQRAAAGRFIKVGL 223 (452)
T ss_pred cEEEEeCCchhHHHHhcC--CCCCEEEEECcH---HHHHHHHHHHHhcCCcEEE
Confidence 366777765222333332 567778888887 7788888877766677664
No 435
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=35.89 E-value=50 Score=32.12 Aligned_cols=36 Identities=31% Similarity=0.401 Sum_probs=27.9
Q ss_pred EEEeccccchh--hHHHHHHHhhcCCcEEEeechhHHH
Q 007475 466 VLLRGTVTANK--VANAVASSLCQMGIKVATICKDDYE 501 (602)
Q Consensus 466 v~l~g~~~~~k--~~~aia~~lc~~~~~v~~~~~~~~~ 501 (602)
|.|||-.++-| +|+++...|-++|++|.++..|...
T Consensus 5 IwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR 42 (156)
T PF01583_consen 5 IWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR 42 (156)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh
Confidence 67888766556 9999999999999999996666443
No 436
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=35.78 E-value=46 Score=34.71 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=30.4
Q ss_pred ccCceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 461 KTTAHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 461 ~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
..-|.|+.||-.+ -=+|.|+|+-+.|+|.+|.-.++
T Consensus 5 ~~~k~VlItgcs~-GGIG~ala~ef~~~G~~V~AtaR 40 (289)
T KOG1209|consen 5 SQPKKVLITGCSS-GGIGYALAKEFARNGYLVYATAR 40 (289)
T ss_pred cCCCeEEEeecCC-cchhHHHHHHHHhCCeEEEEEcc
Confidence 4567889998887 38999999999999999998444
No 437
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=35.68 E-value=40 Score=36.22 Aligned_cols=53 Identities=26% Similarity=0.382 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCCeEEeeccccccccccccccchhccCCCCccEEEeeCCccchhhhhhcCCccCceEEEeccccchh
Q 007475 397 SLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANK 476 (602)
Q Consensus 397 ~~ie~ai~~a~~~g~kv~sl~~lnk~~~ln~~g~l~~~~~p~~l~vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k 476 (602)
.+-+..++...+.+|.|||.|++.=+ | ||+| =
T Consensus 14 ~~y~~~~~~~~~~~vPVIsVGNitvG------G---------------------------------------TGKT---P 45 (311)
T TIGR00682 14 FLYDLGLKKAKRAPVPVVIVGNLSVG------G---------------------------------------TGKT---P 45 (311)
T ss_pred HHHHcCccccccCCCCEEEEeccccC------C---------------------------------------cChH---H
Confidence 33455566667788899999876521 1 3444 5
Q ss_pred hHHHHHHHhhcCCcEEEeech
Q 007475 477 VANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 477 ~~~aia~~lc~~~~~v~~~~~ 497 (602)
+..++|.+|-++|.||.++|+
T Consensus 46 ~v~~La~~l~~~G~~~~IlSR 66 (311)
T TIGR00682 46 VVVWLAELLKDRGLRVGVLSR 66 (311)
T ss_pred HHHHHHHHHHHCCCEEEEECC
Confidence 889999999999999999664
No 438
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=35.58 E-value=82 Score=31.48 Aligned_cols=39 Identities=26% Similarity=0.333 Sum_probs=30.1
Q ss_pred cchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCCcE
Q 007475 450 LAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIK 491 (602)
Q Consensus 450 l~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~ 491 (602)
++.+.+.+.++.+..+|+++|.. .+.+++..+|-++|++
T Consensus 196 ~~~~~l~~~~~~~~~~v~icGp~---~m~~~v~~~l~~~G~~ 234 (247)
T cd06184 196 IDLALLRELLLPADADFYLCGPV---PFMQAVREGLKALGVP 234 (247)
T ss_pred cCHHHHhhccCCCCCEEEEECCH---HHHHHHHHHHHHcCCC
Confidence 34455555466667899999999 6789999999999985
No 439
>PRK08291 ectoine utilization protein EutC; Validated
Probab=35.55 E-value=93 Score=33.26 Aligned_cols=95 Identities=17% Similarity=0.075 Sum_probs=55.9
Q ss_pred hcCCeEEeecccccccccccc-ccchhccCCCCccEE-E-eeCCccch-----hhhhhc--C-CccCceEEEeccccchh
Q 007475 408 AKGVKVISLGLLNQGEELNRN-GEIYLERQPNKLKIK-V-VDGSSLAA-----AVVVNS--L-PKTTAHVLLRGTVTANK 476 (602)
Q Consensus 408 ~~g~kv~sl~~lnk~~~ln~~-g~l~~~~~p~~l~vr-v-v~g~tl~a-----a~vl~~--i-p~~~~~v~l~g~~~~~k 476 (602)
..|+|+++----|....|-.- |.+.+ -.|+.=.+. + .||+.||+ +..+.. + +++.+.|.+.|+. .
T Consensus 67 ~~g~K~~~~~~~N~~~glp~~~g~i~l-~d~~tG~~~ai~~d~~~lt~~rT~a~~~~a~~~la~~~~~~v~IiGaG---~ 142 (330)
T PRK08291 67 SFAIKVSPGFFDNPKLGLPSLNGLMVV-LSARTGLVEALLLDNGYLTDVRTAAAGAVAARHLAREDASRAAVIGAG---E 142 (330)
T ss_pred eeEEEeccCCCCccccCCCcceEEEEE-EeCCCCceEEEEcCCchHHHHHHHHHHHHHHHHhCCCCCCEEEEECCC---H
Confidence 367888875544544333332 33333 334412233 2 38988864 111111 2 6788899999998 7
Q ss_pred hHHHHHHHhhc-CCc-EEEe--echhHHHHHHhc
Q 007475 477 VANAVASSLCQ-MGI-KVAT--ICKDDYEKLKLR 506 (602)
Q Consensus 477 ~~~aia~~lc~-~~~-~v~~--~~~~~~~~~~~~ 506 (602)
.|++++.+|++ +|+ +|.+ -+.++-+.+.++
T Consensus 143 ~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~ 176 (330)
T PRK08291 143 QARLQLEALTLVRPIREVRVWARDAAKAEAYAAD 176 (330)
T ss_pred HHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHH
Confidence 89999999994 665 4555 344455555544
No 440
>PRK13252 betaine aldehyde dehydrogenase; Provisional
Probab=35.47 E-value=61 Score=36.46 Aligned_cols=48 Identities=21% Similarity=0.220 Sum_probs=27.3
Q ss_pred EEEeeCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 442 IKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 442 vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+.+|+|+.-++. .|-+ -++++-|++||++ ++|+.|+....++..+|.+
T Consensus 202 v~~v~g~~~~~~-~L~~-~~~vd~V~fTGS~---~~g~~i~~~aa~~l~~~~l 249 (488)
T PRK13252 202 FNVVQGDGRVGA-WLTE-HPDIAKVSFTGGV---PTGKKVMAAAAASLKEVTM 249 (488)
T ss_pred EEEEecCcHHHH-HHhc-CCCCCEEEEECcH---HHHHHHHHHHhhcCCcEEE
Confidence 555655443222 2212 2356777777777 7777777766666555544
No 441
>cd07115 ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxymuconic semialdehyde dehydrogenase-like. 4-hydroxymuconic semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of Pseudomonas fluorescens ACB involved in 4-hydroxyacetophenone degradation, and putative hydroxycaproate semialdehyde dehydrogenase (ChnE) of Brachymonas petroleovorans involved in cyclohexane metabolism, and other similar sequences, are present in this CD.
Probab=35.31 E-value=64 Score=35.78 Aligned_cols=30 Identities=10% Similarity=0.156 Sum_probs=18.4
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+++-|++||++ ++|+.|+....++..+|.+
T Consensus 196 ~id~v~fTGs~---~~g~~v~~~aa~~~~~~~l 225 (453)
T cd07115 196 DVDKITFTGST---AVGRKIMQGAAGNLKRVSL 225 (453)
T ss_pred CCCEEEEECcH---HHHHHHHHHHhhcCCeEEE
Confidence 45666667666 6666666655555555554
No 442
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=35.29 E-value=56 Score=38.57 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=32.4
Q ss_pred EEEeeCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHh-h-cCCcEEEe
Q 007475 442 IKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSL-C-QMGIKVAT 494 (602)
Q Consensus 442 vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~l-c-~~~~~v~~ 494 (602)
+-+|.|+ +..++..+| +.+-|.+||++ ++|+.|+.+. | ++..+|.+
T Consensus 209 ~~vv~g~---~~~~~~~~~-~i~~v~FTGS~---~~G~~i~~~~~a~~~~~~~~l 256 (675)
T PRK11563 209 LQLICGS---AGDLLDHLD-GQDVVTFTGSA---ATAQKLRAHPNVVANSVPFTA 256 (675)
T ss_pred EEEeeCC---HHHHhhcCC-CCCEEEEECcH---HHHHHHHhhhhhhhCCceEEE
Confidence 6677775 122444444 57899999999 9999999863 2 67777755
No 443
>PRK08013 oxidoreductase; Provisional
Probab=35.29 E-value=41 Score=36.34 Aligned_cols=32 Identities=31% Similarity=0.380 Sum_probs=28.2
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
.+|...|+. =+|-+.|.+|+|+|++|+++.+.
T Consensus 4 ~dV~IvGaG---paGl~~A~~La~~G~~v~viE~~ 35 (400)
T PRK08013 4 VDVVIAGGG---MVGLAVACGLQGSGLRVAVLEQR 35 (400)
T ss_pred CCEEEECcC---HHHHHHHHHHhhCCCEEEEEeCC
Confidence 478999999 89999999999999999995443
No 444
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=34.93 E-value=56 Score=34.36 Aligned_cols=37 Identities=16% Similarity=0.078 Sum_probs=29.0
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeec--hhHHHHH
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATIC--KDDYEKL 503 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~--~~~~~~~ 503 (602)
+.|.+.|+. -+|.++|..|+++|.+|.+.+ ++..+..
T Consensus 3 ~~V~VIG~G---~mG~~iA~~la~~G~~V~v~d~~~~~~~~~ 41 (308)
T PRK06129 3 GSVAIIGAG---LIGRAWAIVFARAGHEVRLWDADPAAAAAA 41 (308)
T ss_pred cEEEEECcc---HHHHHHHHHHHHCCCeeEEEeCCHHHHHHH
Confidence 458889976 899999999999999999943 3344443
No 445
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=34.76 E-value=46 Score=32.03 Aligned_cols=31 Identities=16% Similarity=0.346 Sum_probs=24.0
Q ss_pred EEEeccccchhhHHHHHHHhhcCCc-EEEeechh
Q 007475 466 VLLRGTVTANKVANAVASSLCQMGI-KVATICKD 498 (602)
Q Consensus 466 v~l~g~~~~~k~~~aia~~lc~~~~-~v~~~~~~ 498 (602)
+++||.++ .+|..+|.+|.++|. +|+++++.
T Consensus 3 ylitGG~g--glg~~la~~La~~~~~~~il~~r~ 34 (181)
T PF08659_consen 3 YLITGGLG--GLGQSLARWLAERGARRLILLGRS 34 (181)
T ss_dssp EEEETTTS--HHHHHHHHHHHHTT-SEEEEEESS
T ss_pred EEEECCcc--HHHHHHHHHHHHcCCCEEEEeccC
Confidence 68899986 999999999999876 55554444
No 446
>PRK06823 ornithine cyclodeaminase; Validated
Probab=34.72 E-value=1.3e+02 Score=32.36 Aligned_cols=95 Identities=19% Similarity=0.092 Sum_probs=61.7
Q ss_pred HhcCCeEEeeccccccccccc-cccchhccCCCCccEE-Ee-eCCccch-------hhhhhcC-CccCceEEEeccccch
Q 007475 407 DAKGVKVISLGLLNQGEELNR-NGEIYLERQPNKLKIK-VV-DGSSLAA-------AVVVNSL-PKTTAHVLLRGTVTAN 475 (602)
Q Consensus 407 ~~~g~kv~sl~~lnk~~~ln~-~g~l~~~~~p~~l~vr-vv-~g~tl~a-------a~vl~~i-p~~~~~v~l~g~~~~~ 475 (602)
+-.|+|++|.--=|....|-. .|.+.+. .|+.-+.. +. ||+.||+ |+-..-+ +++.+.+-+.|+.
T Consensus 62 ~~~g~K~v~~~p~N~~~glP~~~g~v~l~-d~~TG~p~Ail~d~~~lT~~RTaA~sala~~~La~~d~~~l~iiG~G--- 137 (315)
T PRK06823 62 DQFVVKVSTGFYDNPAQGLPSNQGLMLAF-SAKTGEPQALLLDEGWLTALRTALAGRIVARLLAPQHVSAIGIVGTG--- 137 (315)
T ss_pred CeEEEEEEeecCCCccCCCCCeeEEEEEE-ECCCCceEEEEcCCChHHHHHHHHHHHHHHHHhcCCCCCEEEEECCc---
Confidence 347899998776666554422 3344443 66534555 54 9999974 2333445 7899999999999
Q ss_pred hhHHHHHHHhh--cCCcEEEe--echhHHHHHHh
Q 007475 476 KVANAVASSLC--QMGIKVAT--ICKDDYEKLKL 505 (602)
Q Consensus 476 k~~~aia~~lc--~~~~~v~~--~~~~~~~~~~~ 505 (602)
..|+.-+.++| +.--+|.+ -+.++=+++.+
T Consensus 138 ~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~ 171 (315)
T PRK06823 138 IQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQ 171 (315)
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHH
Confidence 89999999999 44445555 34444444443
No 447
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=34.64 E-value=39 Score=35.55 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=27.4
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
+|...|+. =+|.++|..|+|+|.+|+++.++
T Consensus 5 dv~IIGgG---i~G~s~A~~L~~~g~~V~lie~~ 35 (376)
T PRK11259 5 DVIVIGLG---SMGSAAGYYLARRGLRVLGLDRF 35 (376)
T ss_pred cEEEECCC---HHHHHHHHHHHHCCCeEEEEecc
Confidence 58899998 78999999999999999996554
No 448
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=34.62 E-value=3e+02 Score=26.44 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=27.6
Q ss_pred ccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 461 KTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 461 ~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
.|.++|+++|-.+ +---.+.|..+.++|++|.+
T Consensus 112 ~gi~~vvi~G~~t-~~CV~~Ta~~A~~~Gy~v~v 144 (179)
T cd01015 112 RGVDTLIVAGCST-SGCIRATAVDAMQHGFRPIV 144 (179)
T ss_pred cCCCEEEEeeecc-cHhHHHHHHHHHHCCCeEEE
Confidence 4788999999886 56567788889999999998
No 449
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=34.48 E-value=88 Score=33.29 Aligned_cols=116 Identities=22% Similarity=0.242 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHHHHhcCCeEEeeccccccccccccccchhccCCCCccEEEeeCCccchhhhhhcCCccCceEEEeccc
Q 007475 393 EAINSLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTV 472 (602)
Q Consensus 393 ~~in~~ie~ai~~a~~~g~kv~sl~~lnk~~~ln~~g~l~~~~~p~~l~vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~ 472 (602)
-|+.|-|+.|-..+++.|-+|.+||-|=-|++ -+++.-+ +.|++||.- +++|+|. -|+++.-.
T Consensus 11 ~GV~rAi~~a~~~~~~~~~~vy~lG~iIHN~~-------vv~~L~~-~Gv~~v~~~--------~~~~~g~-~ViirAHG 73 (281)
T PF02401_consen 11 FGVKRAIEIAEEALEEYPGPVYTLGPIIHNPQ-------VVERLEK-RGVKVVDDI--------DEVPEGD-TVIIRAHG 73 (281)
T ss_dssp HHHHHHHHHHHHHCCCHSS-EEECS-SSS-HH-------HHHHHHH-CTEEEESSG--------CGS-TTE-EEEE-TT-
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEecCcccCHH-------HHHHHHH-CCCEEecCc--------cccCCCC-EEEEeCCC
Confidence 35677777777777777669999998866544 2334444 667777664 5666443 34444322
Q ss_pred cchhhHHHHHHHhhcCCcEEEeechhHHHHHHhcCchhhhccceeccccccccceEEEEcCCCCHHHh
Q 007475 473 TANKVANAVASSLCQMGIKVATICKDDYEKLKLRIPVEAQHNLVLSTSYAAHKTKIWLVGDDLTGKEQ 540 (602)
Q Consensus 473 ~~~k~~~aia~~lc~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~w~vg~~~~~~eq 540 (602)
+..++-..|-+||++|+=..=-.-.++++. +.+|.++..++-|+||.==||-+
T Consensus 74 ----v~~~~~~~l~~~g~~viDaTCP~V~k~~~~-----------v~~~~~~Gy~iviiG~~~HpEv~ 126 (281)
T PF02401_consen 74 ----VPPEVYEELKERGLEVIDATCPFVKKIHKI-----------VRKYAKEGYQIVIIGDKNHPEVI 126 (281)
T ss_dssp ------HHHHHHHHHTTEEEEE---HHHHHHHHH-----------HHHHHHCT-EEEEES-TT-HHHH
T ss_pred ----CCHHHHHHHHHcCCEEEECCChhHHHHHHH-----------HHHHHhcCCEEEEECCCCCceEE
Confidence 357777778888888753111223333333 22333345567777776655543
No 450
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=34.32 E-value=66 Score=33.61 Aligned_cols=40 Identities=15% Similarity=0.306 Sum_probs=31.7
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEee--chhHHHHHHh
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATI--CKDDYEKLKL 505 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~--~~~~~~~~~~ 505 (602)
.+.|-+.|+. .+|.+||..|.+.|.+|.+. +.+.-+++++
T Consensus 4 ~~~I~vIGaG---~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~ 45 (311)
T PRK06130 4 IQNLAIIGAG---TMGSGIAALFARKGLQVVLIDVMEGALERARG 45 (311)
T ss_pred ccEEEEECCC---HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH
Confidence 3568889998 89999999999999999983 3455555544
No 451
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=34.22 E-value=70 Score=32.69 Aligned_cols=42 Identities=26% Similarity=0.301 Sum_probs=32.8
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEe--echhHHHHHHh
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVAT--ICKDDYEKLKL 505 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~--~~~~~~~~~~~ 505 (602)
+.+.|++.|+.+ =+|.+++..+.++|++|.+ .+.++.+.+++
T Consensus 146 ~~~~vlI~g~~g--~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 189 (326)
T cd08289 146 EQGPVLVTGATG--GVGSLAVSILAKLGYEVVASTGKADAADYLKK 189 (326)
T ss_pred CCCEEEEEcCCc--hHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH
Confidence 346899999975 6999999999999999987 35566666643
No 452
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=34.22 E-value=39 Score=33.74 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=27.4
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEeechhHH
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVATICKDDY 500 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~~~ 500 (602)
+|...|+. --|-+.|..|.|+|++|+++.+.++
T Consensus 2 dv~IiGaG---~aGl~~A~~l~~~g~~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAG---PAGASAAYRLADKGLRVLLLEKKSF 34 (295)
T ss_pred CEEEECCC---HHHHHHHHHHHHCCCeEEEEeccCC
Confidence 47888888 6699999999999999999766543
No 453
>cd07091 ALDH_F1-2_Ald2-like ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins. ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the co
Probab=34.21 E-value=70 Score=35.77 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=17.3
Q ss_pred cCceEEEeccccchhhHHHHHHHhhc-CCcEEEe
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQ-MGIKVAT 494 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~-~~~~v~~ 494 (602)
+++-|.+||++ ++|+.|+....+ +..+|++
T Consensus 220 ~vd~V~fTGs~---~~g~~v~~~aa~~~~~~~~l 250 (476)
T cd07091 220 DVDKIAFTGST---AVGRTIMEAAAKSNLKKVTL 250 (476)
T ss_pred CcCEEEEECcH---HHHHHHHHHHHhcCCceEEE
Confidence 55666666666 666666665554 3344444
No 454
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=34.20 E-value=36 Score=34.58 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=27.3
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcE---EEeechh
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIK---VATICKD 498 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~---v~~~~~~ 498 (602)
.-+.|++.|+. -.|++||..|++.|++ |.+.+++
T Consensus 24 ~~~rvlvlGAG---gAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 24 EEVKIVINGAG---AAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred cCCEEEEECch---HHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 34689999998 6799999999999995 7774443
No 455
>cd07138 ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric acid dehydrogenase-like. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD.
Probab=34.06 E-value=72 Score=35.56 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=16.7
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+++-|.+||++ ++|+.|+.+..++..+|++
T Consensus 209 ~v~~v~fTGs~---~~g~~i~~~aa~~~~~v~l 238 (466)
T cd07138 209 DVDMVSFTGST---RAGKRVAEAAADTVKRVAL 238 (466)
T ss_pred CCCEEEEECcH---HHHHHHHHHHhccCCeEEE
Confidence 35555666655 5666666655555455443
No 456
>PLN02527 aspartate carbamoyltransferase
Probab=34.06 E-value=1e+02 Score=33.03 Aligned_cols=161 Identities=16% Similarity=0.202 Sum_probs=95.2
Q ss_pred HHhcCCeEEeecc------ccccccc-------cccccchhccCCC---------CccEEEeeC-Cc--------cc-hh
Q 007475 406 ADAKGVKVISLGL------LNQGEEL-------NRNGEIYLERQPN---------KLKIKVVDG-SS--------LA-AA 453 (602)
Q Consensus 406 a~~~g~kv~sl~~------lnk~~~l-------n~~g~l~~~~~p~---------~l~vrvv~g-~t--------l~-aa 453 (602)
+.+.|.+++.|.. +.|+|.+ ++..-+.|-|||+ ...|=|+++ ++ |+ ..
T Consensus 61 ~~~LGg~~i~l~~~~~~s~~~kgEs~~Dta~vls~y~D~iviR~~~~~~~~~~a~~~~vPVINa~~g~~~HPtQ~LaDl~ 140 (306)
T PLN02527 61 MKRLGGEVLTTENAGEFSSAAKGETLEDTIRTVEGYSDIIVLRHFESGAARRAAATAEIPVINAGDGPGQHPTQALLDVY 140 (306)
T ss_pred HHHcCCCEEEeCCCCCccccCCCcCHHHHHHHHHHhCcEEEEECCChhHHHHHHHhCCCCEEECCCCCCCChHHHHHHHH
Confidence 5689999999965 4578876 7888888999986 356778887 32 22 22
Q ss_pred hhhhcCCc-cCceEEEeccccchhhHHHHHHHhhcC-CcEEEeechhHHHH---HHhcCchhhhccceecccccc--ccc
Q 007475 454 VVVNSLPK-TTAHVLLRGTVTANKVANAVASSLCQM-GIKVATICKDDYEK---LKLRIPVEAQHNLVLSTSYAA--HKT 526 (602)
Q Consensus 454 ~vl~~ip~-~~~~v~l~g~~~~~k~~~aia~~lc~~-~~~v~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~--~~~ 526 (602)
.|...... +-..|-+.|...-+++++..+..|++. |+.|.+.+.+.|+. +..++. +....+...++.++ +.+
T Consensus 141 Ti~e~~g~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~-~~g~~~~~~~d~~~a~~~a 219 (306)
T PLN02527 141 TIQREIGRLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLT-SKGVEWEESSDLMEVASKC 219 (306)
T ss_pred HHHHHhCCcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHH-HcCCEEEEEcCHHHHhCCC
Confidence 23333332 235889999863259999999999987 99999877777741 111111 11112122234433 566
Q ss_pred eEEEEcCCCCHHHhhcCC---CCCeeeecccCCCc---CCCCCc-ccccCC
Q 007475 527 KIWLVGDDLTGKEQARAP---KGTIFIPYTQIPPR---KLRKDC-FYHSTP 570 (602)
Q Consensus 527 k~w~vg~~~~~~eq~~a~---~gt~f~~~~~~pp~---~~r~dc-~y~~~~ 570 (602)
-+... +++.. |+.... -...+-+|. +-.. ..|+|| +.|.+|
T Consensus 220 Dvvyt-~~~q~-e~~~~~~~~~~~~~~~y~-v~~~ll~~a~~~~ivmHclP 267 (306)
T PLN02527 220 DVLYQ-TRIQR-ERFGERIDLYEAARGKYI-VDKKVMDVLPKHAVVMHPLP 267 (306)
T ss_pred CEEEE-CCcch-hhhcchHHHHHHhCCCce-ECHHHHhccCCCCEEECCCC
Confidence 55444 56542 221000 111123453 6555 456887 688999
No 457
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=34.05 E-value=25 Score=35.67 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=23.3
Q ss_pred EEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 467 LLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 467 ~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
|+||+++ =||+.++.+|+++|..|++
T Consensus 1 lItGa~G--fiG~~l~~~L~~~g~~v~~ 26 (306)
T PLN02725 1 FVAGHRG--LVGSAIVRKLEALGFTNLV 26 (306)
T ss_pred CcccCCC--cccHHHHHHHHhCCCcEEE
Confidence 5799996 9999999999999988765
No 458
>cd07113 ALDH_PADH_NahF Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like. NAD+-dependent, homodimeric, phenylacetaldehyde dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia coli involved in the catabolism of 2-phenylethylamine, and other related sequences, are present in this CD. Also included is the Pseudomonas fluorescens ST StyD PADH involved in styrene catabolism, the Sphingomonas sp. LB126 FldD protein involved in fluorene degradation, and the Novosphingobium aromaticivorans NahF salicylaldehyde dehydrogenase involved in the NAD+-dependent conversion of salicylaldehyde to salicylate.
Probab=33.97 E-value=61 Score=36.36 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=27.4
Q ss_pred EEEeeCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 442 IKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 442 vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+.+|.|+.=++..+++ -++++-|++||++ ++|++|+....+++.+|.+
T Consensus 202 v~~v~g~~~~~~~L~~--~~~v~~V~fTGS~---~~G~~i~~~aa~~~~~~~l 249 (477)
T cd07113 202 LNVVNGKGAVGAQLIS--HPDVAKVSFTGSV---ATGKKIGRQAASDLTRVTL 249 (477)
T ss_pred EEEEecCchHHHHHhc--CCCCCEEEEECcH---HHHHHHHHHHHhhcCceEe
Confidence 5566554322222221 2346677777777 7777777766666666544
No 459
>cd07103 ALDH_F5_SSADH_GabD Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.
Probab=33.94 E-value=68 Score=35.42 Aligned_cols=50 Identities=14% Similarity=0.214 Sum_probs=32.5
Q ss_pred cEEEeeCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 441 KIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 441 ~vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
-+.+|+|..-..+-.+-+ -++++-|++||++ ++|+.|+....+++.++.+
T Consensus 176 ~v~~v~~~~~~~~~~l~~-~~~vd~V~ftGs~---~~g~~v~~~aa~~~~~~~l 225 (451)
T cd07103 176 VLNVVTGSPAEIGEALCA-SPRVRKISFTGST---AVGKLLMAQAADTVKRVSL 225 (451)
T ss_pred cEEEEecCchhHHHHHhc-CCCCCEEEEECCH---HHHHHHHHHHHhcCCcEEE
Confidence 367777754332221111 1367788999987 8888888887777777655
No 460
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=33.80 E-value=65 Score=33.01 Aligned_cols=39 Identities=15% Similarity=0.288 Sum_probs=31.6
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEeec--hhHHHHHHhc
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVATIC--KDDYEKLKLR 506 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~--~~~~~~~~~~ 506 (602)
.|.+.|+. -+|.++|..|++.|.+|.+.. .++.+.++++
T Consensus 2 ~I~IiG~G---~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~ 42 (304)
T PRK06522 2 KIAILGAG---AIGGLFGAALAQAGHDVTLVARRGAHLDALNEN 42 (304)
T ss_pred EEEEECCC---HHHHHHHHHHHhCCCeEEEEECChHHHHHHHHc
Confidence 46788887 899999999999999998844 4667777664
No 461
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=33.63 E-value=63 Score=32.30 Aligned_cols=60 Identities=20% Similarity=0.328 Sum_probs=39.0
Q ss_pred cCCCCccEEEeeC-----CccchhhhhhcCCc-cCceEEEeccccchhhHHHHHHHhhcCCcEEEeechhH
Q 007475 435 RQPNKLKIKVVDG-----SSLAAAVVVNSLPK-TTAHVLLRGTVTANKVANAVASSLCQMGIKVATICKDD 499 (602)
Q Consensus 435 ~~p~~l~vrvv~g-----~tl~aa~vl~~ip~-~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~~ 499 (602)
++|+ +++.++.. ..++.+.+-+.+|. +..+|+++|.. .+.+++..+|-++|+. --++.|+
T Consensus 177 ~~~~-~~~~~~~s~~~~~g~~~~~~l~~~~~~~~~~~vyvcGp~---~m~~~~~~~l~~~Gv~-~~i~~e~ 242 (243)
T cd06216 177 QHPN-LRLHLLYTREELDGRLSAAHLDAVVPDLADRQVYACGPP---GFLDAAEELLEAAGLA-DRLHTER 242 (243)
T ss_pred hCCC-eEEEEEEcCCccCCCCCHHHHHHhccCcccCeEEEECCH---HHHHHHHHHHHHCCCc-cceeecc
Confidence 4566 66654321 12444444444453 34599999999 8889999999999997 4334454
No 462
>cd07088 ALDH_LactADH-AldA Escherichia coli lactaldehyde dehydrogenase AldA-like. Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD.
Probab=33.45 E-value=67 Score=35.74 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=11.8
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEE
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKV 492 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v 492 (602)
++-|.+||++ ++|+.|+....++..+|
T Consensus 213 v~~V~ftGs~---~~g~~i~~~aa~~~~~~ 239 (468)
T cd07088 213 VGMISLTGST---EAGQKIMEAAAENITKV 239 (468)
T ss_pred CCEEEEECcH---HHHHHHHHHHHhcCCcE
Confidence 4444444444 44444444433333333
No 463
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=33.22 E-value=88 Score=26.55 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=27.3
Q ss_pred ccCceEEEeccccchhhHHHHHHHhhcC-CcEEEeech
Q 007475 461 KTTAHVLLRGTVTANKVANAVASSLCQM-GIKVATICK 497 (602)
Q Consensus 461 ~~~~~v~l~g~~~~~k~~~aia~~lc~~-~~~v~~~~~ 497 (602)
-.-+.|.+.|.. .+|+++|.+|++. +-+|.+.++
T Consensus 21 ~~~~~v~i~G~G---~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGAG---EVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCEEEEECCC---HHHHHHHHHHHHcCCCEEEEEcC
Confidence 345789999996 8999999999998 567777544
No 464
>PRK09183 transposase/IS protein; Provisional
Probab=33.14 E-value=53 Score=34.03 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=28.7
Q ss_pred ceEEEeccccchh--hHHHHHHHhhcCCcEEEeechh
Q 007475 464 AHVLLRGTVTANK--VANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 464 ~~v~l~g~~~~~k--~~~aia~~lc~~~~~v~~~~~~ 498 (602)
.-|+++|.++.-| ++.||+..+|++|.+|...+..
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~ 139 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAA 139 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHH
Confidence 4588998887667 9999999999999999875533
No 465
>PRK00124 hypothetical protein; Validated
Probab=33.11 E-value=1.8e+02 Score=28.37 Aligned_cols=84 Identities=19% Similarity=0.167 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcCCeEEeeccccccccccccccchhccCCCCccEEEee-CCccchhhhhhcCCccCceEEEeccccchhh
Q 007475 399 IEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIKVVD-GSSLAAAVVVNSLPKTTAHVLLRGTVTANKV 477 (602)
Q Consensus 399 ie~ai~~a~~~g~kv~sl~~lnk~~~ln~~g~l~~~~~p~~l~vrvv~-g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~ 477 (602)
.|+.+.-|++.|++|+-.+-.|+.-.. ...|. .+..+|+ |.--+=-.|+|.+-+| ++..|..-+
T Consensus 13 k~~i~r~a~r~~i~v~~Vas~n~~~~~--------~~~~~-v~~v~V~~g~D~AD~~Iv~~~~~g--DiVIT~Di~---- 77 (151)
T PRK00124 13 KDIIIRVAERHGIPVTLVASFNHFLRV--------PYSPF-IRTVYVDAGFDAADNEIVQLAEKG--DIVITQDYG---- 77 (151)
T ss_pred HHHHHHHHHHHCCeEEEEEeCCcccCC--------CCCCc-eEEEEeCCCCChHHHHHHHhCCCC--CEEEeCCHH----
Confidence 456666789999999999988876432 22344 6777777 5555556888888776 678998873
Q ss_pred HHHHHHHhhcCCcEEEeechhHH
Q 007475 478 ANAVASSLCQMGIKVATICKDDY 500 (602)
Q Consensus 478 ~~aia~~lc~~~~~v~~~~~~~~ 500 (602)
+|.-+-.||..|+=-+-+.|
T Consensus 78 ---LAa~~l~Kga~vl~prG~~y 97 (151)
T PRK00124 78 ---LAALALEKGAIVLNPRGYIY 97 (151)
T ss_pred ---HHHHHHHCCCEEECCCCcCC
Confidence 55556699999987333333
No 466
>cd07144 ALDH_ALD2-YMR170C Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) and other similar sequences, are present in this CD.
Probab=33.05 E-value=77 Score=35.58 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=20.8
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+++-|.+||++ .+|++|+.+..+++.+|.+
T Consensus 223 ~vd~V~fTGS~---~~g~~i~~~a~~~~~~~~l 252 (484)
T cd07144 223 DVDKIAFTGST---ATGRLVMKAAAQNLKAVTL 252 (484)
T ss_pred CcCEEEEECcH---HHHHHHHHHHHhcCCeEEE
Confidence 56677888877 7777777766666566543
No 467
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=32.97 E-value=45 Score=35.92 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=28.8
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeechhH
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICKDD 499 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~~ 499 (602)
++|...|+. =+|.++|.+|.|+|.+|+++.+++
T Consensus 2 ~~vvIIGaG---~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAG---ITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCC---HHHHHHHHHHHHCCCeEEEEeCCC
Confidence 478889988 789999999999999999976654
No 468
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.92 E-value=63 Score=32.78 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=34.2
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech--hHHHHHHhcCch
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK--DDYEKLKLRIPV 509 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~--~~~~~~~~~~~~ 509 (602)
+-|+.||+. .-+|++|++.|.+-|-||+-.++ +..++|-+|-|.
T Consensus 8 ~~vlvTgag--aGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~p~ 53 (245)
T KOG1207|consen 8 VIVLVTGAG--AGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKETPS 53 (245)
T ss_pred eEEEeeccc--ccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhCCc
Confidence 457889987 47999999999999999998443 456666666554
No 469
>cd07090 ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde dehydrogenase (TMABADH, EC=1.2.1.47), also known as aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in humans, is a cytosolic tetramer which catalyzes the oxidation of gamma-aminobutyraldehyde involved in 4-aminobutyric acid (GABA) biosynthesis and also oxidizes betaine aldehyde (gamma-trimethylaminobutyraldehyde) which is involved in carnitine biosynthesis.
Probab=32.89 E-value=66 Score=35.74 Aligned_cols=30 Identities=23% Similarity=0.201 Sum_probs=16.0
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+++-|.+||++ .+|+.|+....+.+.+|++
T Consensus 194 ~v~~v~fTGs~---~~g~~i~~~aa~~~~~~~l 223 (457)
T cd07090 194 DVAKVSFTGSV---PTGKKVMSAAAKGIKHVTL 223 (457)
T ss_pred CCCEEEEECcH---HHHHHHHHHHhccCCceEE
Confidence 34555566655 5555555555454445444
No 470
>cd07109 ALDH_AAS00426 Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like. Uncharacterized aldehyde dehydrogenase of Saccharopolyspora spinosa (AAS00426) and other similar sequences, are present in this CD.
Probab=32.84 E-value=72 Score=35.41 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=21.5
Q ss_pred ccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 461 KTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 461 ~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
++++-|++||++ ++|+.|+.+..+++.+|++
T Consensus 195 ~~v~~v~ftGs~---~~g~~i~~~aa~~~~p~~l 225 (454)
T cd07109 195 PGVDHISFTGSV---ETGIAVMRAAAENVVPVTL 225 (454)
T ss_pred CCCCEEEEECCH---HHHHHHHHHHhhcCCcEEE
Confidence 446677777776 7777777776676677654
No 471
>PRK13473 gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=32.79 E-value=71 Score=35.69 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=19.8
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+++-|.+||++ .+|+.|+....+++.++.+
T Consensus 216 ~vd~V~fTGs~---~~g~~i~~~aa~~~~~~~l 245 (475)
T PRK13473 216 KVRMVSLTGSI---ATGKHVLSAAADSVKRTHL 245 (475)
T ss_pred CCCEEEEECcH---HHHHHHHHHHhhcCCcEEE
Confidence 56667777776 6777777666566566553
No 472
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=32.70 E-value=1e+02 Score=26.04 Aligned_cols=39 Identities=18% Similarity=0.155 Sum_probs=29.3
Q ss_pred EEeccccchhhHHHHHHHhhcCC---cEEEe---echhHHHHHHhcCc
Q 007475 467 LLRGTVTANKVANAVASSLCQMG---IKVAT---ICKDDYEKLKLRIP 508 (602)
Q Consensus 467 ~l~g~~~~~k~~~aia~~lc~~~---~~v~~---~~~~~~~~~~~~~~ 508 (602)
-+.|.. ++|.|++..|.+.| -+|.+ -+.|+-++++++.+
T Consensus 3 ~iIG~G---~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~ 47 (96)
T PF03807_consen 3 GIIGAG---NMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG 47 (96)
T ss_dssp EEESTS---HHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT
T ss_pred EEECCC---HHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc
Confidence 345777 99999999999999 99996 33445566666655
No 473
>cd07130 ALDH_F7_AASADH NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B. Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer.
Probab=32.68 E-value=65 Score=36.15 Aligned_cols=30 Identities=13% Similarity=0.092 Sum_probs=18.2
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+++-|++||++ ++|+.|+....++-.+|.+
T Consensus 214 ~vd~V~fTGs~---~~g~~i~~~aa~~~~~~~l 243 (474)
T cd07130 214 RVPLVSFTGST---AVGRQVGQAVAARFGRSLL 243 (474)
T ss_pred CCCEEEEECch---HHHHHHHHHHHhcCCCEEE
Confidence 45666777776 6677776665555444443
No 474
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=32.54 E-value=65 Score=33.37 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=28.0
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEeec--hhHHHHHH
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVATIC--KDDYEKLK 504 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~--~~~~~~~~ 504 (602)
.|-+.|.. .+|.++|.+|.++|.+|...+ ++.-++.+
T Consensus 2 ~I~IIG~G---~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~ 40 (279)
T PRK07417 2 KIGIVGLG---LIGGSLGLDLRSLGHTVYGVSRRESTCERAI 40 (279)
T ss_pred eEEEEeec---HHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 36677866 899999999999999999843 33444443
No 475
>PLN02466 aldehyde dehydrogenase family 2 member
Probab=32.51 E-value=70 Score=36.80 Aligned_cols=51 Identities=16% Similarity=0.119 Sum_probs=31.1
Q ss_pred ccEEEeeCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhc-CCcEEEe
Q 007475 440 LKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQ-MGIKVAT 494 (602)
Q Consensus 440 l~vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~-~~~~v~~ 494 (602)
=-+.+|.|..=.+...|-+ -++++-|++||++ .+|+.|+.+.++ ...+|++
T Consensus 253 gvv~vv~g~~~~~~~~L~~-~~~vd~V~FTGS~---~~G~~v~~~aa~~~l~pv~l 304 (538)
T PLN02466 253 GVLNVVSGFGPTAGAALAS-HMDVDKLAFTGST---DTGKIVLELAAKSNLKPVTL 304 (538)
T ss_pred ccEEEEecCchhHHHHHhc-CCCcCEEEEECCH---HHHHHHHHHHHhcCCCcEEE
Confidence 3466666643222222222 1347788899988 888888887774 5566655
No 476
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=32.42 E-value=52 Score=36.54 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=27.0
Q ss_pred ceEEEeccccchhhHHH-HHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANA-VASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~a-ia~~lc~~~~~v~~~~~ 497 (602)
+.|.+.|.. |-|.+ +|.+|+++|.+|...+.
T Consensus 8 ~~v~viG~G---~sG~s~~a~~L~~~G~~V~~~D~ 39 (461)
T PRK00421 8 KRIHFVGIG---GIGMSGLAEVLLNLGYKVSGSDL 39 (461)
T ss_pred CEEEEEEEc---hhhHHHHHHHHHhCCCeEEEECC
Confidence 378999998 88999 79999999999999543
No 477
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=32.33 E-value=33 Score=31.85 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHhcCCeEEee
Q 007475 392 REAINSLIEEAILEADAKGVKVISL 416 (602)
Q Consensus 392 ~~~in~~ie~ai~~a~~~g~kv~sl 416 (602)
.-+-|..+-+|+..|.++|+|||+|
T Consensus 112 ~SG~s~~vi~a~~~Ak~~G~~vIal 136 (138)
T PF13580_consen 112 NSGNSPNVIEAAEEAKERGMKVIAL 136 (138)
T ss_dssp SSS-SHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 3456688899999999999999986
No 478
>cd07106 ALDH_AldA-AAD23400 Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like. Putative aldehyde dehydrogenase, AldA, from Streptomyces aureofaciens (locus AAD23400) and other similar sequences are present in this CD.
Probab=32.32 E-value=71 Score=35.36 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=31.1
Q ss_pred EEEeeCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 442 IKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 442 vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+.+|+|+.-++..++ + -++++-|++||++ ++|+.|+....++..++.+
T Consensus 173 ~~~v~g~~~~~~~l~-~-~~~vd~V~fTGs~---~~g~~v~~~aa~~~~~~~l 220 (446)
T cd07106 173 LNVVSGGDELGPALT-S-HPDIRKISFTGST---ATGKKVMASAAKTLKRVTL 220 (446)
T ss_pred EEEeeCChhHHHHHh-c-CCCCCEEEEECCH---HHHHHHHHHHHhcCCeeEE
Confidence 556666432222121 1 2357888999988 8999999887777777764
No 479
>cd07107 ALDH_PhdK-like Nocardioides 2-carboxybenzaldehyde dehydrogenase, PhdK-like. Nocardioides sp. strain KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme involved in phenanthrene degradation, and other similar sequences, are present in this CD.
Probab=32.31 E-value=81 Score=35.08 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=19.4
Q ss_pred ccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 461 KTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 461 ~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
++++-|.+||++ ++|+.|+....+.+.+|.+
T Consensus 193 ~~i~~v~fTGs~---~~g~~i~~~aa~~~~~~~l 223 (456)
T cd07107 193 PDVKRIALIGSV---PTGRAIMRAAAEGIKHVTL 223 (456)
T ss_pred CCCCEEEEECcH---HHHHHHHHHHhcCCCeEEE
Confidence 345566777766 6677777665555566544
No 480
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=32.23 E-value=80 Score=37.33 Aligned_cols=48 Identities=19% Similarity=0.320 Sum_probs=34.0
Q ss_pred ccEEEeeCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHh-h-cCCcEEEe
Q 007475 440 LKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSL-C-QMGIKVAT 494 (602)
Q Consensus 440 l~vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~l-c-~~~~~v~~ 494 (602)
=-+.+|+|+ .+.++..+| +.+-|.+||++ ++|++|+... | +++.+|.+
T Consensus 203 gv~~~v~g~---~~~~~~~~~-~~~~V~FTGS~---~~G~~i~~~aaaa~~~~~~~l 252 (663)
T TIGR02278 203 GSLQLICGS---AGDLLDHLD-HRDVVAFTGSA---ATADRLRAHPNVLERGIRFNA 252 (663)
T ss_pred CcEEEEeCC---hHHHHhcCC-CCCEEEEECCH---HHHHHHHHhHhHHhcCceEEE
Confidence 456777775 222444444 46789999999 9999999863 3 77788765
No 481
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=32.16 E-value=94 Score=33.22 Aligned_cols=68 Identities=19% Similarity=0.322 Sum_probs=44.0
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCc--EEEeec--hhHHHHHHhc----Cchhhhccceecccccc-ccceEEEEcCC
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGI--KVATIC--KDDYEKLKLR----IPVEAQHNLVLSTSYAA-HKTKIWLVGDD 534 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~--~v~~~~--~~~~~~~~~~----~~~~~~~~l~~~~~~~~-~~~k~w~vg~~ 534 (602)
+.|-+.|+. .||.++|..|+.+|+ .+.+++ ++.-+-...+ +|... +.-+.++.|++ +++.+-|+-.+
T Consensus 7 ~ki~iiGaG---~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~-~~~i~~~~~~~~~~adivIitag 82 (315)
T PRK00066 7 NKVVLVGDG---AVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTS-PTKIYAGDYSDCKDADLVVITAG 82 (315)
T ss_pred CEEEEECCC---HHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccC-CeEEEeCCHHHhCCCCEEEEecC
Confidence 588999984 999999999999999 566633 3433322222 32221 22224457888 88888776444
Q ss_pred C
Q 007475 535 L 535 (602)
Q Consensus 535 ~ 535 (602)
.
T Consensus 83 ~ 83 (315)
T PRK00066 83 A 83 (315)
T ss_pred C
Confidence 3
No 482
>cd07087 ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl aldehyde dehydrogenase, ALDH families 3, 13, and 14, and other related proteins. ALDH subfamily which includes NAD(P)+-dependent, aldehyde dehydrogenase, family 3 member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and also plant ALDH family members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14 (YMR110C) and the protozoan family 13 member (ALDH13), as well as coniferyl aldehyde dehydrogenases (CALDH, EC=1.2.1.68), and other similar sequences, such as the Pseudomonas putida benzaldehyde dehydrogenase I that is involved in the metabolism of mandelate.
Probab=31.83 E-value=75 Score=35.10 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=28.6
Q ss_pred EEEeeCCccchhhhhhcCCccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 442 IKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 442 vrvv~g~tl~aa~vl~~ip~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+-+|+|+.-+.+.++.. | ++-|.+||++ ++|++|+....+++.++++
T Consensus 159 ~~vv~g~~~~~~~l~~~-~--v~~V~ftGs~---~~g~~i~~~a~~~~~~~~l 205 (426)
T cd07087 159 VAVVEGGVEVATALLAE-P--FDHIFFTGSP---AVGKIVMEAAAKHLTPVTL 205 (426)
T ss_pred EEEEeCCchHHHHHHhC-C--CCEEEEeCCh---HHHHHHHHHHHhhCCceEE
Confidence 45566544334444443 3 7777778877 7777777766666566554
No 483
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=31.82 E-value=45 Score=29.87 Aligned_cols=29 Identities=21% Similarity=0.145 Sum_probs=22.1
Q ss_pred HHHHHHHhhcCCcEEEeechhHHHHHHhc
Q 007475 478 ANAVASSLCQMGIKVATICKDDYEKLKLR 506 (602)
Q Consensus 478 ~~aia~~lc~~~~~v~~~~~~~~~~~~~~ 506 (602)
.-|||.+|.+||.+|.+...++|+..-++
T Consensus 15 ~lala~~L~~rGh~V~~~~~~~~~~~v~~ 43 (139)
T PF03033_consen 15 FLALARALRRRGHEVRLATPPDFRERVEA 43 (139)
T ss_dssp HHHHHHHHHHTT-EEEEEETGGGHHHHHH
T ss_pred HHHHHHHHhccCCeEEEeecccceecccc
Confidence 46899999999999999777777765433
No 484
>cd07118 ALDH_SNDH Gluconobacter oxydans L-sorbosone dehydrogenase-like. Included in this CD is the L-sorbosone dehydrogenase (SNDH) from Gluconobacter oxydans UV10. In G. oxydans, D-sorbitol is converted to 2-keto-L-gulonate (a precursor of L-ascorbic acid) in sequential oxidation steps catalyzed by a FAD-dependent, L-sorbose dehydrogenase and an NAD(P)+-dependent, L-sorbosone dehydrogenase.
Probab=31.70 E-value=77 Score=35.31 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=17.0
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+++-|.+||++ ++|+.|+....++..+|.+
T Consensus 198 ~v~~v~ftGs~---~~g~~i~~~aa~~~~~~~l 227 (454)
T cd07118 198 DVDMVSFTGST---RVGKAIAAAAARNLKKVSL 227 (454)
T ss_pred CCCEEEEECcH---HHHHHHHHHHHhcCCcEEe
Confidence 45556666655 5666666655555445444
No 485
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=31.56 E-value=50 Score=36.37 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=27.4
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCcEEEeec
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~ 496 (602)
.+.|.++|.. +.|.++|.+|.++|.+|.+.+
T Consensus 5 ~~~~~v~G~g---~~G~~~a~~l~~~g~~v~~~d 35 (445)
T PRK04308 5 NKKILVAGLG---GTGISMIAYLRKNGAEVAAYD 35 (445)
T ss_pred CCEEEEECCC---HHHHHHHHHHHHCCCEEEEEe
Confidence 3679999987 899999999999999999943
No 486
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=31.55 E-value=70 Score=33.00 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=26.2
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEee
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATI 495 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~ 495 (602)
+.|-+.|+. .+|.+||..|.++|.+|++.
T Consensus 4 ~kI~VIG~G---~mG~~ia~~la~~g~~V~~~ 32 (282)
T PRK05808 4 QKIGVIGAG---TMGNGIAQVCAVAGYDVVMV 32 (282)
T ss_pred cEEEEEccC---HHHHHHHHHHHHCCCceEEE
Confidence 468888998 99999999999999999993
No 487
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=31.51 E-value=1.9e+02 Score=30.83 Aligned_cols=79 Identities=22% Similarity=0.373 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHh-cCCeEEeeccccccccccccccchhccCCCCccEEEe--eCCccchhhhhhcCCccCceEEEec
Q 007475 394 AINSLIEEAILEADA-KGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIKVV--DGSSLAAAVVVNSLPKTTAHVLLRG 470 (602)
Q Consensus 394 ~in~~ie~ai~~a~~-~g~kv~sl~~lnk~~~ln~~g~l~~~~~p~~l~vrvv--~g~tl~aa~vl~~ip~~~~~v~l~g 470 (602)
|+.|-||.|-..+++ .|-+|..||-|=-|++- |++.-+ +.|++| +. ++++|.+. -|+++
T Consensus 14 GV~rAi~~a~~~~~~~~~~~vy~lG~iVHN~~V-------v~~L~~-~Gv~~v~~~~--------~~~v~~~~-~Viir- 75 (281)
T PRK12360 14 GVKRAIDTAYDEIEKNDGKKIYTLGPLIHNNQV-------VSDLEE-KGVKTIEESE--------IDSLKEGD-VVIIR- 75 (281)
T ss_pred cHHHHHHHHHHHHHhcCCCCeEEecCCcCCHHH-------HHHHHH-CcCEEECcCc--------hhhCCCCC-EEEEe-
Confidence 345555544333222 38889999987555432 333444 667777 53 46677542 34444
Q ss_pred cccchhhHHHHHHHhhcCCcEEE
Q 007475 471 TVTANKVANAVASSLCQMGIKVA 493 (602)
Q Consensus 471 ~~~~~k~~~aia~~lc~~~~~v~ 493 (602)
|-+ +...+-..|-+||++|+
T Consensus 76 AHG---v~~~~~~~~~~~g~~vi 95 (281)
T PRK12360 76 SHG---VSKKVYKDLKDKGLEII 95 (281)
T ss_pred CCC---CCHHHHHHHHHCCCeEE
Confidence 322 24666667777887775
No 488
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=31.37 E-value=47 Score=37.57 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=30.4
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEeechhHH
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVATICKDDY 500 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~~~ 500 (602)
..-+|...|+. =.|-++|..|++||.+|+++.++++
T Consensus 5 ~~~DVvIIGGG---i~G~~~A~~la~rGl~V~LvEk~d~ 40 (508)
T PRK12266 5 ETYDLLVIGGG---INGAGIARDAAGRGLSVLLCEQDDL 40 (508)
T ss_pred CcCCEEEECcC---HHHHHHHHHHHHCCCeEEEEecCCC
Confidence 34579999988 6799999999999999999766554
No 489
>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Probab=31.35 E-value=68 Score=35.95 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=18.1
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+++-|.+||++ ++|++|+....+++.+|++
T Consensus 214 ~v~~V~fTGs~---~~g~~i~~~aa~~~~~~~l 243 (478)
T cd07085 214 DIKAVSFVGST---PVGEYIYERAAANGKRVQA 243 (478)
T ss_pred CcCEEEEECCH---HHHHHHHHHHhhcCCcEEe
Confidence 35666666666 6666666655555555544
No 490
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=31.34 E-value=41 Score=38.33 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.0
Q ss_pred hhhHHHHHHHhhcCCcEEEeec
Q 007475 475 NKVANAVASSLCQMGIKVATIC 496 (602)
Q Consensus 475 ~k~~~aia~~lc~~~~~v~~~~ 496 (602)
-|.|+|||.++.+||-+|.+++
T Consensus 282 GkmG~alA~aa~~~GA~VtlI~ 303 (475)
T PRK13982 282 GKQGFAIAAAAAAAGAEVTLIS 303 (475)
T ss_pred hHHHHHHHHHHHHCCCcEEEEe
Confidence 3999999999999999999854
No 491
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=31.28 E-value=2.6e+02 Score=26.27 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=28.1
Q ss_pred ccCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 461 KTTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 461 ~~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
.+.++|+++|-.+ +---.+.|..+.++|++|.+
T Consensus 97 ~gi~~viv~G~~t-d~CV~~Ta~~a~~~g~~v~v 129 (155)
T cd01014 97 AGIDHLVICGAMT-EMCVDTTVRSAFDLGYDVTV 129 (155)
T ss_pred CCCCEEEEEeecc-chhHHHHHHHHHHCCCcEEE
Confidence 3779999999886 55567888899999999999
No 492
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=31.07 E-value=53 Score=35.30 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=27.2
Q ss_pred ceEEEeccccchhhHHHHHHHhhcCCcEEEeech
Q 007475 464 AHVLLRGTVTANKVANAVASSLCQMGIKVATICK 497 (602)
Q Consensus 464 ~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~ 497 (602)
.+|...|+. =.|-+.|..|+|+|++|+++.+
T Consensus 3 ~dV~IVGaG---~aGl~~A~~L~~~G~~v~viE~ 33 (405)
T PRK05714 3 ADLLIVGAG---MVGSALALALQGSGLEVLLLDG 33 (405)
T ss_pred ccEEEECcc---HHHHHHHHHHhcCCCEEEEEcC
Confidence 468999998 7899999999999999999544
No 493
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=31.04 E-value=52 Score=35.78 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=15.6
Q ss_pred HHHHHHHHhcCCeEEeecccc
Q 007475 400 EEAILEADAKGVKVISLGLLN 420 (602)
Q Consensus 400 e~ai~~a~~~g~kv~sl~~ln 420 (602)
+..++...+.+|.|||.|++.
T Consensus 45 ~~g~~~~~~~pvPVIsVGNit 65 (338)
T PRK01906 45 ARGWKKSVRLGVPVVVVGNVT 65 (338)
T ss_pred hhcccccccCCCCEEEECCcc
Confidence 444555566789999999876
No 494
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=31.00 E-value=73 Score=35.12 Aligned_cols=74 Identities=20% Similarity=0.290 Sum_probs=48.7
Q ss_pred HHHHhhcCCcEEEe----echhHHHHHHhcCchhhhccceeccccccccceE-EEEcCCCCHHHhhcCCCCCeeeecccC
Q 007475 481 VASSLCQMGIKVAT----ICKDDYEKLKLRIPVEAQHNLVLSTSYAAHKTKI-WLVGDDLTGKEQARAPKGTIFIPYTQI 555 (602)
Q Consensus 481 ia~~lc~~~~~v~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~-w~vg~~~~~~eq~~a~~gt~f~~~~~~ 555 (602)
+-.++.+|||||++ .+....-.+-+|.-. ...+ +.|+ ||-||.+.++-.+..++|..|.+...-
T Consensus 63 ~L~~~~~~gIkvI~NaGg~np~~~a~~v~eia~--------e~Gl---~lkvA~V~gDd~~~~v~~~~~~g~~~~~l~~~ 131 (362)
T PF07287_consen 63 LLPAAAEKGIKVITNAGGLNPAGCADIVREIAR--------ELGL---SLKVAVVYGDDLKDEVKELLAEGETIRPLDTG 131 (362)
T ss_pred HHHHHHhCCCCEEEeCCCCCHHHHHHHHHHHHH--------hcCC---CeeEEEEECccchHhHHHHHhCCCCCccCCCC
Confidence 33344499999999 333332222222111 1122 4688 999999999998888899989888877
Q ss_pred CCc-CCCCCcc
Q 007475 556 PPR-KLRKDCF 565 (602)
Q Consensus 556 pp~-~~r~dc~ 565 (602)
||. +.+.+|+
T Consensus 132 ~~l~~~~~~~~ 142 (362)
T PF07287_consen 132 PPLSEWDDRIV 142 (362)
T ss_pred CCcchhccccc
Confidence 777 7665554
No 495
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=30.98 E-value=60 Score=37.73 Aligned_cols=41 Identities=7% Similarity=0.142 Sum_probs=33.8
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEe--echhHHHHHHh
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVAT--ICKDDYEKLKL 505 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~--~~~~~~~~~~~ 505 (602)
..++|.++|.. ++|+.+|..|-++|++|++ .+.|+-+.+++
T Consensus 399 ~~~~vII~G~G---r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~ 441 (601)
T PRK03659 399 DKPQVIIVGFG---RFGQVIGRLLMANKMRITVLERDISAVNLMRK 441 (601)
T ss_pred ccCCEEEecCc---hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh
Confidence 35689999988 9999999999999999999 55556665554
No 496
>PLN00203 glutamyl-tRNA reductase
Probab=30.92 E-value=96 Score=35.74 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=32.4
Q ss_pred CceEEEeccccchhhHHHHHHHhhcCCc-EEEeec--hhHHHHHHhcC
Q 007475 463 TAHVLLRGTVTANKVANAVASSLCQMGI-KVATIC--KDDYEKLKLRI 507 (602)
Q Consensus 463 ~~~v~l~g~~~~~k~~~aia~~lc~~~~-~v~~~~--~~~~~~~~~~~ 507 (602)
-+.|.+.|+. ++|+++|.+|+.+|+ +|.+.+ .++-+.++.+.
T Consensus 266 ~kkVlVIGAG---~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~ 310 (519)
T PLN00203 266 SARVLVIGAG---KMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEF 310 (519)
T ss_pred CCEEEEEeCH---HHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Confidence 5789999996 999999999999997 577733 34555565543
No 497
>TIGR03216 OH_muco_semi_DH 2-hydroxymuconic semialdehyde dehydrogenase. Members of this protein family are 2-hydroxymuconic semialdehyde dehydrogenase. Many aromatic compounds are catabolized by way of the catechol, via the meta-cleavage pathway, to pyruvate and acetyl-CoA. This enzyme performs the second of seven steps in that pathway for catechol degradation.
Probab=30.83 E-value=87 Score=35.19 Aligned_cols=30 Identities=10% Similarity=0.124 Sum_probs=20.1
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEe
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVAT 494 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~ 494 (602)
+++.|++||++ ++|++|+....++..+|++
T Consensus 219 ~vd~v~fTGS~---~~G~~i~~~aa~~~~~~~l 248 (481)
T TIGR03216 219 GVDAITFTGET---RTGSAIMKAAADGVKPVSF 248 (481)
T ss_pred CCCEEEEECCH---HHHHHHHHHHhcCCCeEEE
Confidence 56667777776 6777777766666666654
No 498
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=30.80 E-value=49 Score=34.91 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=26.4
Q ss_pred eEEEeccccchhhHHHHHHHhhcCCcEEEeechh
Q 007475 465 HVLLRGTVTANKVANAVASSLCQMGIKVATICKD 498 (602)
Q Consensus 465 ~v~l~g~~~~~k~~~aia~~lc~~~~~v~~~~~~ 498 (602)
+|...|+. =+|.++|..|.++|.+|+++.++
T Consensus 2 dvvIIGaG---i~G~s~A~~La~~g~~V~l~e~~ 32 (380)
T TIGR01377 2 DVIVVGAG---IMGCFAAYHLAKHGKKTLLLEQF 32 (380)
T ss_pred cEEEECCC---HHHHHHHHHHHHCCCeEEEEecc
Confidence 57888887 67999999999999999996553
No 499
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=30.77 E-value=1.1e+02 Score=37.69 Aligned_cols=73 Identities=10% Similarity=0.064 Sum_probs=40.1
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcCCcEEEe------echhHHHHHHhc------CchhhhccceeccccccccceEE
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVAT------ICKDDYEKLKLR------IPVEAQHNLVLSTSYAAHKTKIW 529 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~~~~v~~------~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~k~w 529 (602)
|.+=+.+||.. ...+++||..+-=.+=+|+. ++.++++++-++ +.||.+..+ +..+|++..+|=
T Consensus 566 GI~v~miTGD~--~~tA~aIA~~lGI~~~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~K~~i--V~~Lq~~G~vVa 641 (903)
T PRK15122 566 GVAVKVLTGDN--PIVTAKICREVGLEPGEPLLGTEIEAMDDAALAREVEERTVFAKLTPLQKSRV--LKALQANGHTVG 641 (903)
T ss_pred CCeEEEECCCC--HHHHHHHHHHcCCCCCCccchHhhhhCCHHHHHHHhhhCCEEEEeCHHHHHHH--HHHHHhCCCEEE
Confidence 66667778877 36677777765422213332 244444433322 223333332 334555566788
Q ss_pred EEcCCCCHH
Q 007475 530 LVGDDLTGK 538 (602)
Q Consensus 530 ~vg~~~~~~ 538 (602)
.+||++.+.
T Consensus 642 mtGDGvNDa 650 (903)
T PRK15122 642 FLGDGINDA 650 (903)
T ss_pred EECCCchhH
Confidence 999999874
No 500
>TIGR03240 arg_catab_astD succinylglutamic semialdehyde dehydrogenase. Members of this protein family are succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71), the fourth enzyme in the arginine succinyltransferase (AST) pathway for arginine catabolism.
Probab=30.66 E-value=72 Score=35.91 Aligned_cols=30 Identities=10% Similarity=0.140 Sum_probs=20.7
Q ss_pred cCceEEEeccccchhhHHHHHHHhhcC-CcEEEe
Q 007475 462 TTAHVLLRGTVTANKVANAVASSLCQM-GIKVAT 494 (602)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~aia~~lc~~-~~~v~~ 494 (602)
+++-|.+||++ ++|+.|+.+.+++ ..+|.+
T Consensus 210 ~vd~V~fTGS~---~~G~~i~~~aa~~~~~~~~l 240 (484)
T TIGR03240 210 DIDGLLFTGSS---NTGHLLHRQFAGRPEKILAL 240 (484)
T ss_pred CCCEEEEECCH---HHHHHHHHHhhhcCCCcEEE
Confidence 57778888888 7888888876654 344433
Done!