Query 007475
Match_columns 602
No_of_seqs 273 out of 1359
Neff 5.0
Searched_HMMs 29240
Date Tue Mar 26 19:17:46 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/007475.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2182-2186//hhsearch_pdb/007475hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fgs_A Probable dehydrogenase 1.0 1 1 28.2 4.3 15 479-493 185-199 (273)
2 3ppi_A 3-hydroxyacyl-COA dehyd 1.0 1 1 27.6 4.0 28 390-417 189-216 (281)
3 3guy_A Short-chain dehydrogena 1.0 1 1 27.3 4.0 28 390-417 145-172 (230)
4 3f9i_A 3-oxoacyl-[acyl-carrier 1.0 1 1 27.1 4.1 28 390-417 158-185 (249)
5 4eso_A Putative oxidoreductase 1.0 1 1 27.1 4.3 26 391-416 155-180 (255)
6 3n74_A 3-ketoacyl-(acyl-carrie 1.0 1 1 27.0 4.2 27 391-417 163-189 (261)
7 3qvo_A NMRA family protein; st 1.0 1 1 27.0 4.4 14 475-488 198-211 (236)
8 3rd5_A Mypaa.01249.C; ssgcid, 1.0 1 1 26.8 4.8 26 391-416 168-195 (291)
9 3ctm_A Carbonyl reductase; alc 1.0 1 1 26.5 3.1 25 391-416 190-214 (279)
10 3gvc_A Oxidoreductase, probabl 1.0 1 1 26.3 3.7 29 390-418 177-205 (277)
No 1
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=1.00 E-value=1 Score=28.15 Aligned_cols=15 Identities=20% Similarity=0.257 Sum_probs=5.8
Q ss_pred HHHHHHHHCCCCEEE
Q ss_conf 999998520793999
Q 007475 479 NAVASSLCQMGIKVA 493 (602)
Q Consensus 479 ~aia~~lc~~~~~v~ 493 (602)
|.+|.-|-++||||-
T Consensus 185 r~lA~Ela~~gIrVN 199 (273)
T 4fgs_A 185 RNWILDLKDRGIRIN 199 (273)
T ss_dssp HHHHHHTTTSCEEEE
T ss_pred HHHHHHHCCCCEEEE
T ss_conf 999999640196999
No 2
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=1.00 E-value=1 Score=27.61 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 1025879999999999976498198611
Q 007475 390 WRREAINSLIEEAILEADAKGVKVISLG 417 (602)
Q Consensus 390 ~~~~~in~~ie~ai~~a~~~g~kv~slg 417 (602)
..|-+++.+.+..-.|-.+.|++|.++.
T Consensus 189 asKaa~~~~~~~la~e~~~~gi~v~~v~ 216 (281)
T 3ppi_A 189 AAKAGVIGLTIAAARDLSSAGIRVNTIA 216 (281)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_conf 7799999999999998765493899986
No 3
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=1.00 E-value=1 Score=27.28 Aligned_cols=28 Identities=32% Similarity=0.344 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 1025879999999999976498198611
Q 007475 390 WRREAINSLIEEAILEADAKGVKVISLG 417 (602)
Q Consensus 390 ~~~~~in~~ie~ai~~a~~~g~kv~slg 417 (602)
..|-+++.+.+..-.|-...|++|.++.
T Consensus 145 asKaa~~~~~~~la~e~~~~gi~v~~v~ 172 (230)
T 3guy_A 145 AVKWAVKGLIESVRLELKGKPMKIIAVY 172 (230)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_conf 8999999999999999886091899997
No 4
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=1.00 E-value=1 Score=27.13 Aligned_cols=28 Identities=11% Similarity=0.251 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 1025879999999999976498198611
Q 007475 390 WRREAINSLIEEAILEADAKGVKVISLG 417 (602)
Q Consensus 390 ~~~~~in~~ie~ai~~a~~~g~kv~slg 417 (602)
..|-+++.+.+..-.|-...|++|.++.
T Consensus 158 ~sK~a~~~~~~~la~e~~~~gi~v~~v~ 185 (249)
T 3f9i_A 158 ASKAGLIGMTKSLSYEVATRGITVNAVA 185 (249)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9999999999999999987091899983
No 5
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=1.00 E-value=1 Score=27.07 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 02587999999999997649819861
Q 007475 391 RREAINSLIEEAILEADAKGVKVISL 416 (602)
Q Consensus 391 ~~~~in~~ie~ai~~a~~~g~kv~sl 416 (602)
.|.+++.+.+..-.|-...|++|.++
T Consensus 155 sKaa~~~~~~~la~e~~~~gi~vn~v 180 (255)
T 4eso_A 155 SKAALVSFASVLAAELLPRGIRVNSV 180 (255)
T ss_dssp HHHHHHHHHHHHHHHTGGGTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 99999999999999973609389998
No 6
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}
Probab=1.00 E-value=1 Score=26.98 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 025879999999999976498198611
Q 007475 391 RREAINSLIEEAILEADAKGVKVISLG 417 (602)
Q Consensus 391 ~~~~in~~ie~ai~~a~~~g~kv~slg 417 (602)
.|-+++.+.+..-.|-...|++|.++.
T Consensus 163 sKaa~~~~~~~la~e~~~~gi~v~~v~ 189 (261)
T 3n74_A 163 TKGWVVSVTKALAIELAPAKIRVVALN 189 (261)
T ss_dssp HHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 999999999999998544580899983
No 7
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=1.00 E-value=1 Score=26.96 Aligned_cols=14 Identities=14% Similarity=0.152 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 25689999985207
Q 007475 475 NKVANAVASSLCQM 488 (602)
Q Consensus 475 ~k~~~aia~~lc~~ 488 (602)
.-|+++++..+...
T Consensus 198 ~DvA~~i~~ll~~~ 211 (236)
T 3qvo_A 198 KSVAALITDIIDKP 211 (236)
T ss_dssp HHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999987492
No 8
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=1.00 E-value=1 Score=26.85 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHCC--CEEEEE
Q ss_conf 02587999999999997649--819861
Q 007475 391 RREAINSLIEEAILEADAKG--VKVISL 416 (602)
Q Consensus 391 ~~~~in~~ie~ai~~a~~~g--~kv~sl 416 (602)
.|-+++.+.+..-.|-...| ++|.++
T Consensus 168 sK~a~~~~~~~la~e~~~~g~~i~v~~v 195 (291)
T 3rd5_A 168 SKLANLLFTSELQRRLTAAGSPLRALAA 195 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 9999999999999998647999899996
No 9
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}
Probab=1.00 E-value=1 Score=26.51 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 02587999999999997649819861
Q 007475 391 RREAINSLIEEAILEADAKGVKVISL 416 (602)
Q Consensus 391 ~~~~in~~ie~ai~~a~~~g~kv~sl 416 (602)
.|-+++.+.+..-.+-...| +|.++
T Consensus 190 sK~a~~~~~~~la~e~~~~~-~v~~v 214 (279)
T 3ctm_A 190 AKAACTHLAKSLAIEWAPFA-RVNTI 214 (279)
T ss_dssp HHHHHHHHHHHHHHHTTTTC-EEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCC-CEEEE
T ss_conf 99999999999999856368-78899
No 10
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=1.00 E-value=1 Score=26.30 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 10258799999999999764981986113
Q 007475 390 WRREAINSLIEEAILEADAKGVKVISLGL 418 (602)
Q Consensus 390 ~~~~~in~~ie~ai~~a~~~g~kv~slg~ 418 (602)
..|-+++.+.+..-.|-...|++|.++.-
T Consensus 177 asKaa~~~l~~~la~e~~~~gI~vn~v~P 205 (277)
T 3gvc_A 177 MSKAGIIQLSRITAAELRSSGIRSNTLLP 205 (277)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 99999999999999984532939999964
Done!