BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007479
(602 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 7/156 (4%)
Query: 368 ADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 427
A+ +DL + +L+ LD+S N + + GI +L P + S + L L+L C+++
Sbjct: 210 ANCKDLCDVVASKASLQELDLSSNKLGNAGIAALCPGLLLPSCK---LRTLWLWECDITA 266
Query: 428 RGVSQLLDTLSTLRRPPTSLSIADNNLGSHIAASLGKFF---GTSVQVLNIGAIGLGSSG 484
G L L ++ LS+A N L A L + G ++ L I L ++
Sbjct: 267 EGCKDLCRVLRA-KQSLKELSLASNELKDEGARLLCESLLEPGCQLESLWIKTCSLTAAS 325
Query: 485 FRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLM 520
+TK L+ + +S N G E + L K +
Sbjct: 326 CPYFCSVLTKSRSLLELQMSSNPLGDEGVQELCKAL 361
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 14/224 (6%)
Query: 368 ADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 427
A+ +DL + +L LD+ N + D GI L P + + R L L+L C+++
Sbjct: 210 ANCKDLCGIVASQASLRELDLGSNGLGDAGIAELCPGLLSPASR---LKTLWLWECDITA 266
Query: 428 RGVSQLLDTLSTLRRPPTSLSIADNNLGSHIAASLGKFF---GTSVQVLNIGAIGLGSSG 484
G L L + LS+A N LG A L + G ++ L + + L ++
Sbjct: 267 SGCRDLCRVLQA-KETLKELSLAGNKLGDEGARLLCESLLQPGCQLESLWVKSCSLTAAC 325
Query: 485 FRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTII 544
+ + +T+ L+ + +S N+ G + L + + + V L E
Sbjct: 326 CQHVSLMLTQNKHLLELQLSSNKLGDSGIQELCQALSQPGTTLRV---LCLGDCEVTNSG 382
Query: 545 CSALK---VAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNGLPI 585
CS+L +A L+ LDL+ NN P + +L G +
Sbjct: 383 CSSLASLLLANRSLRELDLS-NNCVGDPGVLQLLGSLEQPGCAL 425
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 83/195 (42%), Gaps = 9/195 (4%)
Query: 373 LGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ 432
L S L +P L L +SDN + D G+R L + +C+ L +L LE C L+
Sbjct: 101 LPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDP--QCH-LEKLQLEYCRLTAASCEP 157
Query: 433 LLDTLSTLRRPPTSLSIADNNLGSHIAASLGKFFGTS---VQVLNIGAIGLGSSGFRVLQ 489
L L R L++++N++G A LG+ S ++ L + GL + + L
Sbjct: 158 LASVLRA-TRALKELTVSNNDIGEAGARVLGQGLADSACQLETLRLENCGLTPANCKDLC 216
Query: 490 DGVTKELKLVNINISKNR-GGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSAL 548
V + L +++ N G A+ L+ A L + + +C L
Sbjct: 217 GIVASQASLRELDLGSNGLGDAGIAELCPGLLSPASRLKTLWLWECDITASGCRDLCRVL 276
Query: 549 KVAKGHLQRLDLTGN 563
+ AK L+ L L GN
Sbjct: 277 Q-AKETLKELSLAGN 290
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 371 RDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGV 430
+D+GSAL P+L L + N + D G+ ++ S C + +L L+NC L+ G
Sbjct: 42 KDIGSALRANPSLTELCLRTNELGDAGVHLVLQGL--QSPTCK-IQKLSLQNCSLTEAGC 98
Query: 431 SQLLDTLSTLRRPPT--SLSIADNNLG 455
L STLR PT L ++DN LG
Sbjct: 99 GVL---PSTLRSLPTLRELHLSDNPLG 122
>pdb|1Z7X|W Chain W, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|1Z7X|Y Chain Y, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|2Q4G|W Chain W, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
pdb|2Q4G|Y Chain Y, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
Length = 461
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 83/195 (42%), Gaps = 31/195 (15%)
Query: 367 KADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELS 426
+A +D+ SAL P L L++ N + D G+ ++ S + + +L L+NC L+
Sbjct: 42 EARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK---IQKLSLQNCCLT 98
Query: 427 GRGVSQLLDTLSTLRRPPTSLSIADNNLGSHIAASLGKFFGTSVQVLNIGAIGLGSSGFR 486
G G L TL TL PT +Q L++ LG +G +
Sbjct: 99 GAGCGVLSSTLRTL---PT------------------------LQELHLSDNLLGDAGLQ 131
Query: 487 VLQDGVTK-ELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIIC 545
+L +G+ + +L + + + + L+ ++ P+ E+ N + + ++C
Sbjct: 132 LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLC 191
Query: 546 SALKVAKGHLQRLDL 560
LK + L+ L L
Sbjct: 192 QGLKDSPCQLEALKL 206
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 13/197 (6%)
Query: 373 LGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ 432
L S L +P L+ L +SDN + D G++ L + R L +L LE C LS
Sbjct: 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR---LEKLQLEYCSLSAASCEP 161
Query: 433 LLDTLSTLRRPP--TSLSIADNNL---GSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRV 487
L S LR P L++++N++ G + K ++ L + + G+ S R
Sbjct: 162 L---ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218
Query: 488 LQDGVTKELKLVNINISKNR-GGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICS 546
L V + L + + N+ G V A+ L+ + L + + + +C
Sbjct: 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278
Query: 547 ALKVAKGHLQRLDLTGN 563
L+ AK L+ L L GN
Sbjct: 279 VLR-AKESLKELSLAGN 294
>pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Complex
pdb|1A4Y|D Chain D, Ribonuclease Inhibitor-Angiogenin Complex
pdb|2BEX|A Chain A, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
pdb|2BEX|B Chain B, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
Length = 460
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 83/195 (42%), Gaps = 31/195 (15%)
Query: 367 KADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELS 426
+A +D+ SAL P L L++ N + D G+ ++ S + + +L L+NC L+
Sbjct: 41 EARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK---IQKLSLQNCCLT 97
Query: 427 GRGVSQLLDTLSTLRRPPTSLSIADNNLGSHIAASLGKFFGTSVQVLNIGAIGLGSSGFR 486
G G L TL TL PT +Q L++ LG +G +
Sbjct: 98 GAGCGVLSSTLRTL---PT------------------------LQELHLSDNLLGDAGLQ 130
Query: 487 VLQDGVTK-ELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIIC 545
+L +G+ + +L + + + + L+ ++ P+ E+ N + + ++C
Sbjct: 131 LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLC 190
Query: 546 SALKVAKGHLQRLDL 560
LK + L+ L L
Sbjct: 191 QGLKDSPCQLEALKL 205
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 13/197 (6%)
Query: 373 LGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ 432
L S L +P L+ L +SDN + D G++ L + R L +L LE C LS
Sbjct: 104 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR---LEKLQLEYCSLSAASCEP 160
Query: 433 LLDTLSTLRRPP--TSLSIADNNL---GSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRV 487
L S LR P L++++N++ G + K ++ L + + G+ S R
Sbjct: 161 L---ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 217
Query: 488 LQDGVTKELKLVNINISKNR-GGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICS 546
L V + L + + N+ G V A+ L+ + L + + + +C
Sbjct: 218 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 277
Query: 547 ALKVAKGHLQRLDLTGN 563
L+ AK L+ L L GN
Sbjct: 278 VLR-AKESLKELSLAGN 293
>pdb|3UN9|A Chain A, Crystal Structure Of An Immune Receptor
pdb|3UN9|B Chain B, Crystal Structure Of An Immune Receptor
pdb|3UN9|C Chain C, Crystal Structure Of An Immune Receptor
Length = 372
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 9/129 (6%)
Query: 383 LEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRR 442
L+ ++++ ++ G+R+L+P F++A + L L E C+ L D L +
Sbjct: 103 LDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK-------DLRDLLLHDQC 155
Query: 443 PPTSLSIADNNLGSHIAASL--GKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVN 500
T+L +++N L + A L G TSV L++ GLG G +L + + +L
Sbjct: 156 QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQE 215
Query: 501 INISKNRGG 509
+N++ N G
Sbjct: 216 LNVAYNGAG 224
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 415 LVELYLENCELSGRGVSQLLDT----LSTLRRPPTSLSIADNNLGSHIAASLGKFFGTSV 470
L EL LEN E++G LL+ L+ L S + D L A L ++ +
Sbjct: 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWL-----AELQQWLKPGL 151
Query: 471 QVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVN 530
+VL+I S F Q V L ++++ + G +S L PL ++V
Sbjct: 152 KVLSIAQAH--SLNFSCEQVRVFPALSTLDLSDNPELG---ERGLISALCPLKFPTLQVL 206
Query: 531 AGYNLMPLESLTIICSALKVAKGHLQRLDLTGNN 564
A N +E+ + +CSAL A+ LQ LDL+ N+
Sbjct: 207 ALRN-AGMETPSGVCSALAAARVQLQGLDLSHNS 239
>pdb|2PPL|A Chain A, Human Pancreatic Lipase-Related Protein 1
Length = 485
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 422 NCELSGRGVSQLLDTLST-LRRPPTSLSIADNNLGSHIAASLG 463
N + G V+Q+LD L T PP+ + + ++LG+H+A G
Sbjct: 147 NVRVVGAQVAQMLDILLTEYSYPPSKVHLIGHSLGAHVAGEAG 189
>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
Length = 385
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 376 ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLD 435
L + L++LD+ DNT G +L A + L EL L +C LS RG + ++D
Sbjct: 210 GLAYCQELKVLDLQDNTFTHLGSSAL----AIALKSWPNLRELGLNDCLLSARGAAAVVD 265
Query: 436 TLSTL 440
S L
Sbjct: 266 AFSKL 270
>pdb|1I0R|A Chain A, Crystal Structure Of Ferric Reductase From Archaeoglobus
Fulgidus
pdb|1I0R|B Chain B, Crystal Structure Of Ferric Reductase From Archaeoglobus
Fulgidus
pdb|1I0S|A Chain A, Archaeoglobus Fulgidus Ferric Reductase Complex With Nadp+
pdb|1I0S|B Chain B, Archaeoglobus Fulgidus Ferric Reductase Complex With Nadp+
Length = 169
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 418 LYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG-SHIAASLGKFFGTSVQVLNIG 476
LY+ E +GR Q+ +T+ L P +++ N +H A FG SV L
Sbjct: 13 LYIVTSESNGRKCGQIANTVFQLTSKPVQIAVCLNKENDTHNAVKESGAFGVSVLELETP 72
Query: 477 AIGLGSSGFR 486
+G GFR
Sbjct: 73 MEFIGRFGFR 82
>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|2CA6|A Chain A, Miras Structure Determination From Hemihedrally Twinned
Crystals
pdb|2CA6|B Chain B, Miras Structure Determination From Hemihedrally Twinned
Crystals
Length = 386
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 376 ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLD 435
L + L++LD+ DNT G +L A + L EL L +C LS RG + ++D
Sbjct: 211 GLAYCQELKVLDLQDNTFTHLGSSAL----AIALKSWPNLRELGLNDCLLSARGAAAVVD 266
Query: 436 TLSTL 440
S L
Sbjct: 267 AFSKL 271
>pdb|2XD4|A Chain A, Nucleotide-Bound Structures Of Bacillus Subtilis
Glycinamide Ribonucleotide Synthetase
Length = 422
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 490 DGVTKELKLVNINISKNRGGVETAK-------FLSKLMPLAPELVE--VNAGYNLM-PLE 539
DG+ +LVNI S + G V AK + +PL LV+ AG ++ P +
Sbjct: 35 DGMAASAQLVNIEESDHAGLVSFAKQNQVGLTIVGPEVPLIEGLVDEFEKAGLHVFGPSK 94
Query: 540 SLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNGLPILI 587
+ II + + AK +++ D+ +E S + + G PI+I
Sbjct: 95 AAAIIEGSKQFAKDLMKKYDIPTAEYETFTSFDEAKAYVQEKGAPIVI 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,517,415
Number of Sequences: 62578
Number of extensions: 651632
Number of successful extensions: 1374
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1339
Number of HSP's gapped (non-prelim): 36
length of query: 602
length of database: 14,973,337
effective HSP length: 104
effective length of query: 498
effective length of database: 8,465,225
effective search space: 4215682050
effective search space used: 4215682050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)