Query 007479
Match_columns 602
No_of_seqs 416 out of 4015
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 00:10:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007479.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007479hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00116 LRR_RI Leucine-rich re 99.9 2.9E-25 6.3E-30 225.4 31.1 289 259-565 25-319 (319)
2 cd00116 LRR_RI Leucine-rich re 99.9 1.2E-24 2.5E-29 221.0 28.9 311 202-536 3-319 (319)
3 KOG4194 Membrane glycoprotein 99.9 3.3E-28 7.2E-33 242.7 -1.6 373 155-593 57-436 (873)
4 PLN00113 leucine-rich repeat r 99.9 5.9E-26 1.3E-30 264.0 11.9 306 193-566 160-465 (968)
5 PLN00113 leucine-rich repeat r 99.9 6.4E-26 1.4E-30 263.7 11.1 335 175-578 165-501 (968)
6 KOG4194 Membrane glycoprotein 99.9 2.9E-26 6.2E-31 228.9 -0.5 329 199-597 80-416 (873)
7 KOG1909 Ran GTPase-activating 99.9 1.6E-22 3.6E-27 191.4 20.4 341 218-576 23-378 (382)
8 KOG0444 Cytoskeletal regulator 99.9 4.2E-26 9.1E-31 229.1 -8.3 344 176-592 34-381 (1255)
9 KOG1909 Ran GTPase-activating 99.9 5.3E-22 1.2E-26 188.0 17.8 291 281-578 22-323 (382)
10 KOG0444 Cytoskeletal regulator 99.9 7.7E-24 1.7E-28 213.0 -6.3 342 175-589 8-355 (1255)
11 KOG0472 Leucine-rich repeat pr 99.8 1E-21 2.2E-26 188.6 -11.6 90 468-568 435-543 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 1.7E-19 3.7E-24 173.4 -3.3 112 408-537 430-541 (565)
13 KOG0618 Serine/threonine phosp 99.7 2.7E-19 5.9E-24 188.6 -3.6 281 225-578 219-502 (1081)
14 KOG0618 Serine/threonine phosp 99.7 7E-18 1.5E-22 178.2 1.9 340 175-589 69-446 (1081)
15 KOG4308 LRR-containing protein 99.7 6.6E-17 1.4E-21 168.2 8.4 369 198-588 88-465 (478)
16 PRK15370 E3 ubiquitin-protein 99.6 4.2E-16 9.1E-21 170.7 9.3 261 225-578 178-438 (754)
17 PRK15387 E3 ubiquitin-protein 99.6 2.1E-16 4.5E-21 172.1 6.8 258 197-566 201-458 (788)
18 PRK15387 E3 ubiquitin-protein 99.6 1.6E-16 3.4E-21 173.0 5.7 247 197-547 222-468 (788)
19 PRK15370 E3 ubiquitin-protein 99.6 3.9E-16 8.4E-21 171.0 8.2 260 197-546 178-437 (754)
20 COG5238 RNA1 Ran GTPase-activa 99.6 5.6E-15 1.2E-19 135.6 12.8 289 283-577 24-327 (388)
21 PLN03210 Resistant to P. syrin 99.6 1.7E-15 3.6E-20 177.3 7.2 149 175-366 590-738 (1153)
22 KOG4308 LRR-containing protein 99.5 7E-15 1.5E-19 153.2 7.7 359 192-566 110-473 (478)
23 PLN03210 Resistant to P. syrin 99.5 7.2E-15 1.6E-19 171.9 8.1 288 175-535 612-904 (1153)
24 COG5238 RNA1 Ran GTPase-activa 99.5 8.2E-13 1.8E-17 121.5 16.7 251 304-566 17-285 (388)
25 KOG2120 SCF ubiquitin ligase, 99.4 5.3E-13 1.1E-17 124.3 8.1 197 318-547 185-385 (419)
26 KOG4341 F-box protein containi 99.3 1.8E-11 4E-16 119.5 10.9 269 286-595 187-463 (483)
27 KOG4237 Extracellular matrix p 99.3 1.9E-13 4.1E-18 132.0 -3.2 292 197-548 67-371 (498)
28 KOG4237 Extracellular matrix p 99.3 5.3E-13 1.1E-17 129.0 -0.9 321 175-542 68-404 (498)
29 KOG0617 Ras suppressor protein 99.3 2.5E-14 5.3E-19 122.6 -9.5 155 351-537 31-186 (264)
30 KOG2120 SCF ubiquitin ligase, 99.2 3.3E-11 7.1E-16 112.6 8.3 244 289-577 136-384 (419)
31 KOG0617 Ras suppressor protein 99.1 3.7E-13 8.1E-18 115.4 -7.2 155 287-480 31-185 (264)
32 KOG4341 F-box protein containi 99.0 2.8E-10 6.2E-15 111.3 6.6 274 259-575 140-422 (483)
33 KOG3207 Beta-tubulin folding c 99.0 3.3E-11 7.2E-16 118.3 0.1 239 261-537 97-339 (505)
34 KOG3207 Beta-tubulin folding c 99.0 2E-11 4.3E-16 119.8 -3.5 221 194-455 118-339 (505)
35 KOG1259 Nischarin, modulator o 99.0 1.4E-10 2.9E-15 108.5 1.3 130 380-537 283-412 (490)
36 PF14580 LRR_9: Leucine-rich r 99.0 1.9E-10 4.2E-15 103.3 1.5 15 494-508 111-125 (175)
37 PF14580 LRR_9: Leucine-rich r 98.9 3.3E-10 7.1E-15 101.8 1.2 129 351-504 17-148 (175)
38 KOG1259 Nischarin, modulator o 98.9 1.1E-09 2.3E-14 102.6 2.5 131 351-509 282-412 (490)
39 COG4886 Leucine-rich repeat (L 98.8 2.9E-09 6.2E-14 111.4 3.0 174 318-537 116-290 (394)
40 KOG0532 Leucine-rich repeat (L 98.7 5.5E-10 1.2E-14 113.2 -5.0 148 259-455 100-247 (722)
41 COG4886 Leucine-rich repeat (L 98.7 1.9E-08 4.1E-13 105.1 4.8 193 261-509 97-290 (394)
42 KOG0532 Leucine-rich repeat (L 98.6 8.8E-10 1.9E-14 111.8 -6.0 194 320-563 77-270 (722)
43 KOG0531 Protein phosphatase 1, 98.4 7.5E-09 1.6E-13 108.5 -5.0 105 256-394 94-199 (414)
44 KOG0531 Protein phosphatase 1, 98.4 1.8E-08 4E-13 105.5 -4.1 172 317-537 94-268 (414)
45 PLN03150 hypothetical protein; 98.3 1E-06 2.2E-11 96.8 6.4 108 354-479 419-526 (623)
46 PLN03150 hypothetical protein; 98.2 1.3E-06 2.8E-11 96.1 6.2 107 382-507 419-526 (623)
47 KOG2982 Uncharacterized conser 98.2 5.8E-07 1.2E-11 84.6 2.7 219 289-539 45-264 (418)
48 KOG1859 Leucine-rich repeat pr 98.2 9.7E-08 2.1E-12 99.8 -2.7 126 382-536 165-291 (1096)
49 KOG1859 Leucine-rich repeat pr 98.2 2.9E-07 6.3E-12 96.3 -0.9 17 193-209 105-121 (1096)
50 KOG2982 Uncharacterized conser 98.1 8E-07 1.7E-11 83.7 0.7 91 221-329 67-157 (418)
51 KOG1947 Leucine rich repeat pr 98.0 1.7E-05 3.7E-10 85.3 9.4 102 285-400 210-315 (482)
52 KOG1947 Leucine rich repeat pr 98.0 3.3E-05 7.1E-10 83.0 11.1 234 285-565 184-439 (482)
53 KOG3665 ZYG-1-like serine/thre 98.0 2.5E-05 5.4E-10 85.9 9.6 205 195-433 58-270 (699)
54 KOG3665 ZYG-1-like serine/thre 97.9 4.2E-05 9.1E-10 84.1 10.5 209 175-421 61-283 (699)
55 KOG4658 Apoptotic ATPase [Sign 97.9 1.9E-05 4.1E-10 89.1 7.1 110 196-329 544-653 (889)
56 PF13855 LRR_8: Leucine rich r 97.9 2.9E-06 6.2E-11 62.4 -0.3 13 319-331 2-14 (61)
57 KOG4579 Leucine-rich repeat (L 97.9 4.7E-06 1E-10 69.7 0.9 107 382-507 28-134 (177)
58 PF13855 LRR_8: Leucine rich r 97.8 6.1E-06 1.3E-10 60.7 1.1 58 354-424 2-60 (61)
59 KOG4658 Apoptotic ATPase [Sign 97.7 2.3E-05 5.1E-10 88.3 4.0 109 287-424 543-653 (889)
60 KOG4242 Predicted myosin-I-bin 97.7 1.5E-05 3.4E-10 79.8 1.6 306 225-566 165-481 (553)
61 KOG4579 Leucine-rich repeat (L 97.6 4.8E-05 1E-09 63.8 2.9 106 444-566 29-136 (177)
62 PRK15386 type III secretion pr 97.6 5.2E-05 1.1E-09 76.9 3.3 15 222-236 49-63 (426)
63 PF12799 LRR_4: Leucine Rich r 97.5 0.00012 2.5E-09 49.4 3.7 37 354-395 2-38 (44)
64 PF12799 LRR_4: Leucine Rich r 97.3 0.00028 6.1E-09 47.6 3.8 38 381-427 1-38 (44)
65 KOG1644 U2-associated snRNP A' 97.2 0.00017 3.6E-09 64.8 2.0 83 382-481 43-126 (233)
66 KOG1644 U2-associated snRNP A' 97.2 0.00021 4.6E-09 64.1 2.2 114 413-539 42-155 (233)
67 PRK15386 type III secretion pr 97.2 0.00073 1.6E-08 68.7 6.3 138 285-478 48-187 (426)
68 KOG3864 Uncharacterized conser 97.0 0.00071 1.5E-08 60.9 4.1 83 469-563 102-186 (221)
69 KOG2123 Uncharacterized conser 96.8 0.00017 3.6E-09 67.8 -1.7 105 256-387 18-123 (388)
70 KOG2123 Uncharacterized conser 96.8 0.00032 6.9E-09 66.0 -0.2 106 288-419 18-123 (388)
71 smart00368 LRR_RI Leucine rich 96.6 0.0037 8E-08 37.4 3.5 25 524-548 2-26 (28)
72 KOG3864 Uncharacterized conser 96.5 0.0016 3.5E-08 58.6 2.5 82 444-534 103-186 (221)
73 smart00368 LRR_RI Leucine rich 96.3 0.0056 1.2E-07 36.6 3.4 25 496-520 2-26 (28)
74 KOG4242 Predicted myosin-I-bin 96.2 0.0074 1.6E-07 61.1 5.7 317 196-549 164-493 (553)
75 KOG2739 Leucine-rich acidic nu 96.2 0.0018 4E-08 60.7 1.0 86 256-366 42-129 (260)
76 KOG2739 Leucine-rich acidic nu 95.9 0.0024 5.2E-08 60.0 0.5 88 318-427 43-130 (260)
77 PF13516 LRR_6: Leucine Rich r 95.9 0.0058 1.3E-07 35.1 1.8 22 524-545 2-23 (24)
78 KOG3735 Tropomodulin and leiom 95.8 0.022 4.8E-07 55.4 6.2 92 468-560 198-290 (353)
79 PF13516 LRR_6: Leucine Rich r 95.2 0.014 3E-07 33.5 1.7 22 496-517 2-23 (24)
80 KOG3735 Tropomodulin and leiom 93.0 0.43 9.4E-06 46.7 8.0 119 413-532 198-321 (353)
81 smart00367 LRR_CC Leucine-rich 91.5 0.22 4.9E-06 29.0 2.6 23 523-545 1-24 (26)
82 smart00367 LRR_CC Leucine-rich 88.4 0.62 1.3E-05 27.1 2.8 22 496-517 2-24 (26)
83 PF13504 LRR_7: Leucine rich r 83.8 0.79 1.7E-05 23.7 1.4 12 554-565 2-13 (17)
84 PF00560 LRR_1: Leucine Rich R 81.9 0.23 5E-06 27.6 -1.1 12 320-331 2-13 (22)
85 PF07525 SOCS_box: SOCS box; 81.7 1.2 2.7E-05 29.1 2.1 18 4-21 1-18 (40)
86 cd03716 SOCS_ASB_like SOCS (su 80.6 2.9 6.4E-05 27.6 3.6 34 2-36 1-35 (42)
87 cd03718 SOCS_SSB1_4 SOCS (supp 75.7 4.7 0.0001 26.7 3.4 33 3-36 2-35 (42)
88 KOG3763 mRNA export factor TAP 75.6 4 8.6E-05 43.1 4.6 68 377-455 214-283 (585)
89 cd03587 SOCS SOCS (suppressors 75.6 4.9 0.00011 26.4 3.5 19 3-21 1-19 (41)
90 cd03717 SOCS_SOCS_like SOCS (s 71.9 10 0.00022 24.6 4.3 18 2-19 1-18 (39)
91 cd03743 SOCS_SSB4 SOCS (suppre 71.5 5.5 0.00012 26.3 3.0 34 3-37 2-36 (42)
92 KOG3763 mRNA export factor TAP 70.3 8.8 0.00019 40.6 5.6 65 468-537 218-283 (585)
93 cd03742 SOCS_Rab40 SOCS (suppr 67.6 12 0.00027 24.8 3.9 34 3-39 2-35 (43)
94 PF13306 LRR_5: Leucine rich r 66.4 2.4 5.3E-05 35.8 0.7 36 350-391 9-45 (129)
95 cd03723 SOCS_ASB4_ASB18 SOCS ( 64.8 10 0.00023 25.9 3.3 34 3-37 2-36 (48)
96 cd03727 SOCS_ASB8 SOCS (suppre 64.0 6.9 0.00015 25.9 2.2 21 2-22 1-21 (43)
97 smart00365 LRR_SD22 Leucine-ri 63.3 6.6 0.00014 22.9 1.8 13 496-508 2-14 (26)
98 cd03726 SOCS_ASB7 SOCS (suppre 62.6 11 0.00024 25.4 3.1 34 3-37 2-36 (45)
99 PF13306 LRR_5: Leucine rich r 60.0 9.1 0.0002 32.2 3.1 13 378-390 78-90 (129)
100 smart00369 LRR_TYP Leucine-ric 59.9 7.5 0.00016 22.3 1.8 13 554-566 3-15 (26)
101 smart00370 LRR Leucine-rich re 59.9 7.5 0.00016 22.3 1.8 13 554-566 3-15 (26)
102 cd03729 SOCS_ASB13 SOCS (suppr 57.3 16 0.00034 24.2 3.1 34 3-37 2-36 (42)
103 cd03722 SOCS_ASB3 SOCS (suppre 55.9 13 0.00029 25.7 2.7 19 2-20 1-19 (51)
104 cd03721 SOCS_ASB2 SOCS (suppre 55.0 15 0.00033 24.7 2.8 34 3-37 2-36 (45)
105 smart00253 SOCS suppressors of 48.1 46 0.001 22.1 4.2 18 3-20 6-23 (43)
106 cd03724 SOCS_ASB5 SOCS (suppre 45.7 23 0.0005 23.4 2.4 26 2-27 1-27 (42)
107 cd03730 SOCS_ASB14 SOCS (suppr 42.3 29 0.00062 24.7 2.7 19 3-21 2-20 (57)
108 cd03719 SOCS_SSB2 SOCS (suppre 42.0 24 0.00052 23.3 2.1 28 2-29 1-29 (42)
109 COG4572 ChaB Putative cation t 41.1 11 0.00023 27.6 0.4 31 27-57 4-34 (76)
110 KOG0473 Leucine-rich repeat pr 40.9 2.3 4.9E-05 39.8 -3.8 17 521-537 108-124 (326)
111 cd03733 SOCS_WSB_SWIP SOCS (su 40.0 44 0.00095 21.7 3.1 17 4-20 3-19 (39)
112 smart00364 LRR_BAC Leucine-ric 39.5 18 0.00039 21.1 1.1 12 555-566 4-15 (26)
113 cd03720 SOCS_ASB1 SOCS (suppre 38.3 31 0.00068 22.8 2.2 21 2-22 1-21 (42)
114 cd03740 SOCS_SOCS6 SOCS (suppr 35.9 81 0.0018 20.7 3.9 17 3-19 2-18 (41)
115 cd03744 SOCS_SSB1 SOCS (suppre 34.9 38 0.00083 22.4 2.2 20 3-22 2-21 (42)
116 cd03731 SOCS_ASB15 SOCS (suppr 33.6 42 0.0009 23.8 2.4 19 3-21 2-20 (56)
117 cd03746 SOCS_WSB1_SWIP1 SOCS ( 33.0 75 0.0016 20.8 3.3 17 4-20 3-19 (40)
118 KOG0473 Leucine-rich repeat pr 31.2 1.4 3E-05 41.1 -6.8 60 354-427 66-125 (326)
119 cd03725 SOCS_ASB6 SOCS (suppre 30.1 82 0.0018 21.1 3.2 18 3-20 2-19 (44)
120 PF12937 F-box-like: F-box-lik 29.2 39 0.00086 22.6 1.7 23 30-52 2-24 (47)
121 KOG3926 F-box proteins [Amino 26.3 32 0.00069 32.9 1.0 91 10-118 181-281 (332)
122 cd03741 SOCS_SOCS7 SOCS (suppr 25.0 1.1E+02 0.0024 21.1 3.2 17 3-19 2-18 (49)
123 cd03728 SOCS_ASB_9_11 SOCS (su 22.1 67 0.0014 21.3 1.6 19 4-22 3-21 (42)
124 cd03737 SOCS_SOCS3 SOCS (suppr 22.0 1.3E+02 0.0029 19.9 3.0 29 4-36 3-31 (42)
125 PF00646 F-box: F-box domain; 20.5 67 0.0014 21.4 1.5 27 28-54 2-28 (48)
No 1
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.95 E-value=2.9e-25 Score=225.38 Aligned_cols=289 Identities=24% Similarity=0.261 Sum_probs=186.7
Q ss_pred eeEEEecCCCCccCCcchHHHHHHHHhhcCCCccEEEcCCCCCC--hhHHHHHHHHHHhcCCCcCEEEccCCCCCCcccc
Q 007479 259 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD--RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 336 (602)
Q Consensus 259 L~~L~l~~~~l~~~~~~~l~~~l~~~l~~~~~L~~L~Ls~n~l~--~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~ 336 (602)
|+.+.+++|.+++ .....++..+...+++++|+++++.+. ......+...+ ..+++|++|++++|.+.+..+
T Consensus 25 L~~l~l~~~~l~~----~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~- 98 (319)
T cd00116 25 LQVLRLEGNTLGE----EAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL-TKGCGLQELDLSDNALGPDGC- 98 (319)
T ss_pred ccEEeecCCCCcH----HHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHH-HhcCceeEEEccCCCCChhHH-
Confidence 4444444444443 112223333444555666666665554 22223232222 225566666666666653222
Q ss_pred cCCCChhhhhhcCCCCCCccEEEecCCCCChhhHHHHHHHhccC-CCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCc
Q 007479 337 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHI-PNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL 415 (602)
Q Consensus 337 ~~~~~l~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~l-~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L 415 (602)
..+..+.+.++|++|++++|.+++.++..+...+..+ ++|+.|++++|.++..+...+. ..+..+++|
T Consensus 99 -------~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~----~~~~~~~~L 167 (319)
T cd00116 99 -------GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA----KALRANRDL 167 (319)
T ss_pred -------HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH----HHHHhCCCc
Confidence 2222211114577777777777766666666666666 7777788777777765544432 445555677
Q ss_pred cEEEcccCCCChHHHHHHHHHHhcCCCCCcEEEccCCCCChHHHHHHHHHhc--CCccEEEeeccCCChhHHHHHHHHhh
Q 007479 416 VELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVT 493 (602)
Q Consensus 416 ~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~--~~L~~L~L~~n~l~~~~~~~l~~~l~ 493 (602)
++|++++|.+++.+...++..+.... +|++|++++|.+++.....+...+. ++|++|++++|.+++.+...+...+.
T Consensus 168 ~~L~l~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~ 246 (319)
T cd00116 168 KELNLANNGIGDAGIRALAEGLKANC-NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALL 246 (319)
T ss_pred CEEECcCCCCchHHHHHHHHHHHhCC-CCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHh
Confidence 77888777777766666666666543 4888888888777666665554432 56888888888887777776666554
Q ss_pred c-CCCccEEeCcCCCCChHHHHHHHHhCccCCCccEEEccCCCCCHHHHHHHHHHHhhcCCCccEEEecCCCC
Q 007479 494 K-ELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 565 (602)
Q Consensus 494 ~-~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~N~l 565 (602)
. .+.|++|++++|.+++.+...+...+..+++|+.+++++|.+++.+...++..++...+.|+.+++.+|.|
T Consensus 247 ~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 247 SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 3 56788888888888877777777777778888888888888888888888888888756899999888864
No 2
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.94 E-value=1.2e-24 Score=220.97 Aligned_cols=311 Identities=25% Similarity=0.267 Sum_probs=247.1
Q ss_pred EEeccccch-HHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHhhcccccCCceeEEEecCCCCccCCcchHHHH
Q 007479 202 LVLRWIRFE-EHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVE 280 (602)
Q Consensus 202 L~Ls~~~~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~L~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 280 (602)
|+|..+.+. ..+... +..+.+|++|+++++.+++.....+...+.. .+.+++++++++.+... ......
T Consensus 3 l~L~~~~l~~~~~~~~----~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~----~~~l~~l~l~~~~~~~~--~~~~~~ 72 (319)
T cd00116 3 LSLKGELLKTERATEL----LPKLLCLQVLRLEGNTLGEEAAKALASALRP----QPSLKELCLSLNETGRI--PRGLQS 72 (319)
T ss_pred cccccCcccccchHHH----HHHHhhccEEeecCCCCcHHHHHHHHHHHhh----CCCceEEeccccccCCc--chHHHH
Confidence 455555443 233333 4555679999999999988887777777664 57799999988877620 123344
Q ss_pred HHHHhhcCCCccEEEcCCCCCChhHHHHHHHHHHhcCCCcCEEEccCCCCCCcccccCCCChhhhhhcCCCC-CCccEEE
Q 007479 281 LVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSL-QSLRLLN 359 (602)
Q Consensus 281 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~~l~~l~~l-~~L~~L~ 359 (602)
++..+..+++|++|++++|.+.+..+..+... ... ++|++|++++|.+++... ......+..+ ++|++|+
T Consensus 73 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~~-~~L~~L~ls~~~~~~~~~-------~~l~~~l~~~~~~L~~L~ 143 (319)
T cd00116 73 LLQGLTKGCGLQELDLSDNALGPDGCGVLESL-LRS-SSLQELKLNNNGLGDRGL-------RLLAKGLKDLPPALEKLV 143 (319)
T ss_pred HHHHHHhcCceeEEEccCCCCChhHHHHHHHH-hcc-CcccEEEeeCCccchHHH-------HHHHHHHHhCCCCceEEE
Confidence 56667788999999999999987666655432 333 679999999999875221 1222233455 8999999
Q ss_pred ecCCCCChhhHHHHHHHhccCCCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCCCChHHHHHHHHHHhc
Q 007479 360 LRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLST 439 (602)
Q Consensus 360 L~~n~l~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 439 (602)
+++|.++..+...++..+..+++|+.|++++|.+++.++..+. ..+..+++|++|++++|.+++.+...+...+..
T Consensus 144 L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~----~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~ 219 (319)
T cd00116 144 LGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA----EGLKANCNLEVLDLNNNGLTDEGASALAETLAS 219 (319)
T ss_pred cCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHH----HHHHhCCCCCEEeccCCccChHHHHHHHHHhcc
Confidence 9999999877778888888889999999999999988776654 455566899999999999999888888888887
Q ss_pred CCCCCcEEEccCCCCChHHHHHHHHHhc---CCccEEEeeccCCChhHHHHHHHHhhcCCCccEEeCcCCCCChHHHHHH
Q 007479 440 LRRPPTSLSIADNNLGSHIAASLGKFFG---TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFL 516 (602)
Q Consensus 440 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~---~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~l 516 (602)
+. +|++|++++|.+++.+...++..+. ..|++|++++|.+++.+...+...++.+++|+++++++|.+++.+...+
T Consensus 220 ~~-~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~ 298 (319)
T cd00116 220 LK-SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLL 298 (319)
T ss_pred cC-CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHH
Confidence 76 5999999999999888888776643 6899999999999999999999999999999999999999999999999
Q ss_pred HHhCccC-CCccEEEccCCCC
Q 007479 517 SKLMPLA-PELVEVNAGYNLM 536 (602)
Q Consensus 517 ~~~l~~~-~~L~~L~Ls~n~l 536 (602)
+.++... +.|++|++.+|.+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 299 AESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHhhcCCchhhcccCCCCC
Confidence 9888877 8999999998863
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=3.3e-28 Score=242.67 Aligned_cols=373 Identities=17% Similarity=0.130 Sum_probs=212.2
Q ss_pred ccccccccccccccc-c-ccccchhhhccccc-chHHhhHhhhccCCccEEEeccccchHHHHHHHHHHHhcCCCccEEE
Q 007479 155 MNHLACDYSKLSYHC-Q-QFGHYARCLRLQNA-LCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLE 231 (602)
Q Consensus 155 ~~c~~~~~~~l~~~~-~-~~~~~l~~L~l~~~-~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~l~~L~~L~ 231 (602)
+.|.+..+..+...- . .+..+.+.|++... +..+.+..+.+++||+++.+.+|.++.. +. ......+|+.|+
T Consensus 57 ldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~I-P~----f~~~sghl~~L~ 131 (873)
T KOG4194|consen 57 LDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRI-PR----FGHESGHLEKLD 131 (873)
T ss_pred eecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhc-cc----ccccccceeEEe
Confidence 445444444433311 1 33336666777763 3445666677888888888888755432 21 134445688888
Q ss_pred ccCCCCChhHHHHHHHHhhcccccCCceeEEEecCCCCccCCcchHHHHHHHHhhcCCCccEEEcCCCCCChhHHHHHHH
Q 007479 232 FLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFS 311 (602)
Q Consensus 232 L~~~~~~~~~~~~l~~~L~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 311 (602)
|.+|.|+....+++.- .+.|+.|+++.|.|++..... ++.-.++++|+|++|.|+......+
T Consensus 132 L~~N~I~sv~se~L~~--------l~alrslDLSrN~is~i~~~s--------fp~~~ni~~L~La~N~It~l~~~~F-- 193 (873)
T KOG4194|consen 132 LRHNLISSVTSEELSA--------LPALRSLDLSRNLISEIPKPS--------FPAKVNIKKLNLASNRITTLETGHF-- 193 (873)
T ss_pred eeccccccccHHHHHh--------HhhhhhhhhhhchhhcccCCC--------CCCCCCceEEeeccccccccccccc--
Confidence 8888877655555433 455777888888777744444 2333678888888888775444332
Q ss_pred HHHhcCCCcCEEEccCCCCCCcccccCCCChhhhhhcCCCCCCccEEEecCCCCChhhHHHHHHHhccCCCccEEEecCC
Q 007479 312 SLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN 391 (602)
Q Consensus 312 ~l~~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~L~~L~Ls~n 391 (602)
..+.+|.+|.|++|+|+. -....++++++|+.|+|..|.|... -.-.+.++++|+.|.|..|
T Consensus 194 ---~~lnsL~tlkLsrNritt-----------Lp~r~Fk~L~~L~~LdLnrN~iriv----e~ltFqgL~Sl~nlklqrN 255 (873)
T KOG4194|consen 194 ---DSLNSLLTLKLSRNRITT-----------LPQRSFKRLPKLESLDLNRNRIRIV----EGLTFQGLPSLQNLKLQRN 255 (873)
T ss_pred ---cccchheeeecccCcccc-----------cCHHHhhhcchhhhhhccccceeee----hhhhhcCchhhhhhhhhhc
Confidence 345677777888887765 1223445677777777777776642 1223556666666666666
Q ss_pred CCChhhHHhHHHHHHHhhcCCCCccEEEcccCCCChHHHHHHHHHHhcCCCCCcEEEccCCCCChHHHHHHHHHhcCCcc
Q 007479 392 TIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGSHIAASLGKFFGTSVQ 471 (602)
Q Consensus 392 ~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~L~ 471 (602)
+|.. +.. .++..+.++++|+|+.|.+... -..++-.+. .|+.|++|.|.|....+...... .+|+
T Consensus 256 ~I~k------L~D--G~Fy~l~kme~l~L~~N~l~~v----n~g~lfgLt-~L~~L~lS~NaI~rih~d~Wsft--qkL~ 320 (873)
T KOG4194|consen 256 DISK------LDD--GAFYGLEKMEHLNLETNRLQAV----NEGWLFGLT-SLEQLDLSYNAIQRIHIDSWSFT--QKLK 320 (873)
T ss_pred Cccc------ccC--cceeeecccceeecccchhhhh----hcccccccc-hhhhhccchhhhheeecchhhhc--ccce
Confidence 5543 111 3445556777777777776653 223344444 36777777776665555555444 6677
Q ss_pred EEEeeccCCChhHHHHHHHHhhcCCCccEEeCcCCCCChHHHHHHHHhCccCCCccEEEccCCCCCHHHHHHHHHHHhhc
Q 007479 472 VLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVA 551 (602)
Q Consensus 472 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 551 (602)
+|+|++|.|+... .+.+..+..|++|+|++|.++...... +..+++|++|||++|.|+... +.-+.+++.
T Consensus 321 ~LdLs~N~i~~l~----~~sf~~L~~Le~LnLs~Nsi~~l~e~a----f~~lssL~~LdLr~N~ls~~I-EDaa~~f~g- 390 (873)
T KOG4194|consen 321 ELDLSSNRITRLD----EGSFRVLSQLEELNLSHNSIDHLAEGA----FVGLSSLHKLDLRSNELSWCI-EDAAVAFNG- 390 (873)
T ss_pred eEeccccccccCC----hhHHHHHHHhhhhcccccchHHHHhhH----HHHhhhhhhhcCcCCeEEEEE-ecchhhhcc-
Confidence 7777777665544 223333446667777777665433322 233666777777777644211 111112222
Q ss_pred CCCccEEEecCCCCC-CCh---hHHHHHHHHHHcCCCeEEeCCCCC
Q 007479 552 KGHLQRLDLTGNNWE-LQP---SHVSMLSEFRHNGLPILILPTLQA 593 (602)
Q Consensus 552 ~~~L~~L~L~~N~l~-~~~---~~~~~L~~l~~~~~~~~~~~~~~~ 593 (602)
.+.|+.|++.||++. +.. +++..|+.+...++++..|..+.|
T Consensus 391 l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAF 436 (873)
T KOG4194|consen 391 LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAF 436 (873)
T ss_pred chhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccc
Confidence 146667777777663 333 233344444445555555555544
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=5.9e-26 Score=264.05 Aligned_cols=306 Identities=20% Similarity=0.164 Sum_probs=156.4
Q ss_pred hhccCCccEEEeccccchHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHhhcccccCCceeEEEecCCCCccC
Q 007479 193 LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIEN 272 (602)
Q Consensus 193 l~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~L~~~~~~~~~L~~L~l~~~~l~~~ 272 (602)
+..+++|++|++++|.+....+. .+.++++|++|++++|.+....+..+.. +.+|+.|++++|.+++
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~~~~p~~l~~--------l~~L~~L~L~~n~l~~- 226 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPN----SLTNLTSLEFLTLASNQLVGQIPRELGQ--------MKSLKWIYLGYNNLSG- 226 (968)
T ss_pred HhcCCCCCEEECccCcccccCCh----hhhhCcCCCeeeccCCCCcCcCChHHcC--------cCCccEEECcCCccCC-
Confidence 44444444444444433222211 1334444444444444444333333322 3444555554444443
Q ss_pred CcchHHHHHHHHhhcCCCccEEEcCCCCCChhHHHHHHHHHHhcCCCcCEEEccCCCCCCcccccCCCChhhhhhcCCCC
Q 007479 273 CPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSL 352 (602)
Q Consensus 273 ~~~~l~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~~l~~l~~l 352 (602)
. ++..+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+.+..| .. +..+
T Consensus 227 ---~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~p--------~~---l~~l 283 (968)
T PLN00113 227 ---E----IPYEIGGLTSLNHLDLVYNNLTGPIPSSL-----GNLKNLQYLFLYQNKLSGPIP--------PS---IFSL 283 (968)
T ss_pred ---c----CChhHhcCCCCCEEECcCceeccccChhH-----hCCCCCCEEECcCCeeeccCc--------hh---Hhhc
Confidence 1 22223444555555555555444444332 223455555555555444333 11 2234
Q ss_pred CCccEEEecCCCCChhhHHHHHHHhccCCCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCCCChHHHHH
Q 007479 353 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ 432 (602)
Q Consensus 353 ~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 432 (602)
++|++|++++|.++. .++..+..+++|+.|++++|.++.. .| ..+..+++|+.|++++|.+++.
T Consensus 284 ~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~l~~n~~~~~-----~~---~~~~~l~~L~~L~L~~n~l~~~---- 347 (968)
T PLN00113 284 QKLISLDLSDNSLSG----EIPELVIQLQNLEILHLFSNNFTGK-----IP---VALTSLPRLQVLQLWSNKFSGE---- 347 (968)
T ss_pred cCcCEEECcCCeecc----CCChhHcCCCCCcEEECCCCccCCc-----CC---hhHhcCCCCCEEECcCCCCcCc----
Confidence 555555665555554 2444455555666666666555442 33 3344445666666666665543
Q ss_pred HHHHHhcCCCCCcEEEccCCCCChHHHHHHHHHhcCCccEEEeeccCCChhHHHHHHHHhhcCCCccEEeCcCCCCChHH
Q 007479 433 LLDTLSTLRRPPTSLSIADNNLGSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVET 512 (602)
Q Consensus 433 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~ 512 (602)
++..+..+. +|+.|++++|.+.+..+..++.. .+|+.|++++|.++.. ++..+..+++|++|++++|+++...
T Consensus 348 ~p~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~--~~L~~L~l~~n~l~~~----~p~~~~~~~~L~~L~L~~n~l~~~~ 420 (968)
T PLN00113 348 IPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSS--GNLFKLILFSNSLEGE----IPKSLGACRSLRRVRLQDNSFSGEL 420 (968)
T ss_pred CChHHhCCC-CCcEEECCCCeeEeeCChhHhCc--CCCCEEECcCCEeccc----CCHHHhCCCCCCEEECcCCEeeeEC
Confidence 344444443 36666666666655555555555 5666666666655322 2344555667777777777765332
Q ss_pred HHHHHHhCccCCCccEEEccCCCCCHHHHHHHHHHHhhcCCCccEEEecCCCCC
Q 007479 513 AKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWE 566 (602)
Q Consensus 513 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~N~l~ 566 (602)
. ..+..+++|+.|++++|.+++.....+... ++|+.|++++|++.
T Consensus 421 p----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-----~~L~~L~L~~n~~~ 465 (968)
T PLN00113 421 P----SEFTKLPLVYFLDISNNNLQGRINSRKWDM-----PSLQMLSLARNKFF 465 (968)
T ss_pred C----hhHhcCCCCCEEECcCCcccCccChhhccC-----CCCcEEECcCceee
Confidence 2 233457788888888887775544433322 57888888888764
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=6.4e-26 Score=263.75 Aligned_cols=335 Identities=22% Similarity=0.231 Sum_probs=258.3
Q ss_pred chhhhcccccch-HHhhHhhhccCCccEEEeccccchHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHhhccc
Q 007479 175 YARCLRLQNALC-VEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 253 (602)
Q Consensus 175 ~l~~L~l~~~~~-~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~L~~~~ 253 (602)
+++.|++.+... ...+..+.++++|++|++++|.+....+. .+.++++|+.|++++|.+....+..+..
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~p~~l~~------ 234 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR----ELGQMKSLKWIYLGYNNLSGEIPYEIGG------ 234 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh----HHcCcCCccEEECcCCccCCcCChhHhc------
Confidence 567777766432 24456688899999999999876554433 3678899999999999998777776654
Q ss_pred ccCCceeEEEecCCCCccCCcchHHHHHHHHhhcCCCccEEEcCCCCCChhHHHHHHHHHHhcCCCcCEEEccCCCCCCc
Q 007479 254 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 333 (602)
Q Consensus 254 ~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~ 333 (602)
+++|++|++++|.+++ . ++..+.++++|++|++++|.+.+..|..+. .+.+|++|++++|.+.+.
T Consensus 235 --l~~L~~L~L~~n~l~~----~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~Ls~n~l~~~ 299 (968)
T PLN00113 235 --LTSLNHLDLVYNNLTG----P----IPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-----SLQKLISLDLSDNSLSGE 299 (968)
T ss_pred --CCCCCEEECcCceecc----c----cChhHhCCCCCCEEECcCCeeeccCchhHh-----hccCcCEEECcCCeeccC
Confidence 7889999999998876 3 444568889999999999999887776653 468999999999999876
Q ss_pred ccccCCCChhhhhhcCCCCCCccEEEecCCCCChhhHHHHHHHhccCCCccEEEecCCCCChhhHHhHHHHHHHhhcCCC
Q 007479 334 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 413 (602)
Q Consensus 334 ~~~~~~~~l~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~ 413 (602)
.| .. +.++++|++|++++|.++. .++..+..+++|+.|++++|.++.. .| ..++.+.
T Consensus 300 ~p--------~~---~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~-----~p---~~l~~~~ 356 (968)
T PLN00113 300 IP--------EL---VIQLQNLEILHLFSNNFTG----KIPVALTSLPRLQVLQLWSNKFSGE-----IP---KNLGKHN 356 (968)
T ss_pred CC--------hh---HcCCCCCcEEECCCCccCC----cCChhHhcCCCCCEEECcCCCCcCc-----CC---hHHhCCC
Confidence 55 33 3467899999999999987 3667788899999999999998764 55 4566778
Q ss_pred CccEEEcccCCCChHHHHHHHHHHhcCCCCCcEEEccCCCCChHHHHHHHHHhcCCccEEEeeccCCChhHHHHHHHHhh
Q 007479 414 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVT 493 (602)
Q Consensus 414 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~L~~L~L~~n~l~~~~~~~l~~~l~ 493 (602)
+|+.|++++|.+++. ++..+.... +|+.|++++|.+.+..+..+..+ ++|+.|++++|.++.. ++..+.
T Consensus 357 ~L~~L~Ls~n~l~~~----~p~~~~~~~-~L~~L~l~~n~l~~~~p~~~~~~--~~L~~L~L~~n~l~~~----~p~~~~ 425 (968)
T PLN00113 357 NLTVLDLSTNNLTGE----IPEGLCSSG-NLFKLILFSNSLEGEIPKSLGAC--RSLRRVRLQDNSFSGE----LPSEFT 425 (968)
T ss_pred CCcEEECCCCeeEee----CChhHhCcC-CCCEEECcCCEecccCCHHHhCC--CCCCEEECcCCEeeeE----CChhHh
Confidence 999999999998875 555666555 49999999999998888888887 8999999999988643 345566
Q ss_pred cCCCccEEeCcCCCCChHHHHHHHHhCccCCCccEEEccCCCCCHHHHHHHHHHHhhcCCCccEEEecCCCCC-CChhHH
Q 007479 494 KELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWE-LQPSHV 572 (602)
Q Consensus 494 ~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~N~l~-~~~~~~ 572 (602)
.++.|+.|++++|.+..... ..+..+++|+.|++++|.+.+..+..+.. .+|+.|++++|+++ ..+..+
T Consensus 426 ~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n~~~~~~p~~~~~------~~L~~L~ls~n~l~~~~~~~~ 495 (968)
T PLN00113 426 KLPLVYFLDISNNNLQGRIN----SRKWDMPSLQMLSLARNKFFGGLPDSFGS------KRLENLDLSRNQFSGAVPRKL 495 (968)
T ss_pred cCCCCCEEECcCCcccCccC----hhhccCCCCcEEECcCceeeeecCccccc------ccceEEECcCCccCCccChhh
Confidence 78899999999999764332 22345899999999999987554433321 47999999999985 334444
Q ss_pred HHHHHH
Q 007479 573 SMLSEF 578 (602)
Q Consensus 573 ~~L~~l 578 (602)
..+..+
T Consensus 496 ~~l~~L 501 (968)
T PLN00113 496 GSLSEL 501 (968)
T ss_pred hhhhcc
Confidence 444443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=2.9e-26 Score=228.94 Aligned_cols=329 Identities=20% Similarity=0.184 Sum_probs=245.7
Q ss_pred ccEEEeccccchHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHhhcccccCCceeEEEecCCCCccCCcchHH
Q 007479 199 LQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVV 278 (602)
Q Consensus 199 L~~L~Ls~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~L~~~~~~~~~L~~L~l~~~~l~~~~~~~l~ 278 (602)
-+.|++++|++...... .|.++++||++++.+|.+.. .|.... ...+|+.|++.+|.|+....
T Consensus 80 t~~LdlsnNkl~~id~~----~f~nl~nLq~v~l~~N~Lt~-IP~f~~--------~sghl~~L~L~~N~I~sv~s---- 142 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFE----FFYNLPNLQEVNLNKNELTR-IPRFGH--------ESGHLEKLDLRHNLISSVTS---- 142 (873)
T ss_pred eeeeeccccccccCcHH----HHhcCCcceeeeeccchhhh-cccccc--------cccceeEEeeeccccccccH----
Confidence 46799999976544333 37899999999999998765 222211 15669999999999987332
Q ss_pred HHHHHHhhcCCCccEEEcCCCCCChhHHHHHHHHHHhcCCCcCEEEccCCCCCCcccccCCCChhhhhhcCCCCCCccEE
Q 007479 279 VELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLL 358 (602)
Q Consensus 279 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~~l~~l~~l~~L~~L 358 (602)
+.+..++.|+.||||.|.|+ .++.+- +..-.++++|+|++|.|++ -..+.+.++.+|.+|
T Consensus 143 ----e~L~~l~alrslDLSrN~is-~i~~~s----fp~~~ni~~L~La~N~It~-----------l~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 143 ----EELSALPALRSLDLSRNLIS-EIPKPS----FPAKVNIKKLNLASNRITT-----------LETGHFDSLNSLLTL 202 (873)
T ss_pred ----HHHHhHhhhhhhhhhhchhh-cccCCC----CCCCCCceEEeeccccccc-----------cccccccccchheee
Confidence 23466689999999999988 344332 2334789999999999997 333556677899999
Q ss_pred EecCCCCChhhHHHHH-HHhccCCCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCCCChHHHHHHHHHH
Q 007479 359 NLRGNNLCKADARDLG-SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTL 437 (602)
Q Consensus 359 ~L~~n~l~~~~~~~l~-~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 437 (602)
.|++|+|+. +| ..++++++|+.|+|..|.|.. ..+ ..+.++.+|+.|.|..|.+... --.++
T Consensus 203 kLsrNritt-----Lp~r~Fk~L~~L~~LdLnrN~iri------ve~--ltFqgL~Sl~nlklqrN~I~kL----~DG~F 265 (873)
T KOG4194|consen 203 KLSRNRITT-----LPQRSFKRLPKLESLDLNRNRIRI------VEG--LTFQGLPSLQNLKLQRNDISKL----DDGAF 265 (873)
T ss_pred ecccCcccc-----cCHHHhhhcchhhhhhccccceee------ehh--hhhcCchhhhhhhhhhcCcccc----cCcce
Confidence 999999998 44 457779999999999999875 222 3567789999999999998762 11234
Q ss_pred hcCCCCCcEEEccCCCCChHHHHHHHHHhcCCccEEEeeccCCChhHHHHHHHHhhcCCCccEEeCcCCCCChHHHHHHH
Q 007479 438 STLRRPPTSLSIADNNLGSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLS 517 (602)
Q Consensus 438 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~ 517 (602)
-.+. .+++|+|+.|++..---.++.++ +.|+.|+++.|.|.... .....-.++|++|+||+|+|+.-....+.
T Consensus 266 y~l~-kme~l~L~~N~l~~vn~g~lfgL--t~L~~L~lS~NaI~rih----~d~WsftqkL~~LdLs~N~i~~l~~~sf~ 338 (873)
T KOG4194|consen 266 YGLE-KMEHLNLETNRLQAVNEGWLFGL--TSLEQLDLSYNAIQRIH----IDSWSFTQKLKELDLSSNRITRLDEGSFR 338 (873)
T ss_pred eeec-ccceeecccchhhhhhccccccc--chhhhhccchhhhheee----cchhhhcccceeEeccccccccCChhHHH
Confidence 4445 49999999999987777788888 99999999999885443 23344567899999999998866655555
Q ss_pred HhCccCCCccEEEccCCCCCHHHHHHHHHHHhhcCCCccEEEecCCCCC--CC-----hhHHHHHHHHHHcCCCeEEeCC
Q 007479 518 KLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWE--LQ-----PSHVSMLSEFRHNGLPILILPT 590 (602)
Q Consensus 518 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~N~l~--~~-----~~~~~~L~~l~~~~~~~~~~~~ 590 (602)
. +..|++|+|++|.|+...--.+... .+|+.|||+.|.++ ++ ..+++.|+++...|+.+-.|+.
T Consensus 339 ~----L~~Le~LnLs~Nsi~~l~e~af~~l-----ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~k 409 (873)
T KOG4194|consen 339 V----LSQLEELNLSHNSIDHLAEGAFVGL-----SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPK 409 (873)
T ss_pred H----HHHhhhhcccccchHHHHhhHHHHh-----hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecch
Confidence 4 8899999999999864432222222 58999999999885 22 2445667777777777777776
Q ss_pred CCCCCCC
Q 007479 591 LQALDVP 597 (602)
Q Consensus 591 ~~~~~~~ 597 (602)
-.+...+
T Consensus 410 rAfsgl~ 416 (873)
T KOG4194|consen 410 RAFSGLE 416 (873)
T ss_pred hhhccCc
Confidence 6665443
No 7
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.90 E-value=1.6e-22 Score=191.42 Aligned_cols=341 Identities=18% Similarity=0.175 Sum_probs=262.5
Q ss_pred HHHHhcCCCccEEEccCCCCChhHHHHHHHHhhcccccCCceeEEEecCCCCccCCcchHHH---HHHHHhhcCCCccEE
Q 007479 218 KLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVV---ELVSFLSSGRSLCSL 294 (602)
Q Consensus 218 ~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~L~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~---~l~~~l~~~~~L~~L 294 (602)
......+..+++++|++|.|+....+.++.+|.+ .+.|+.-++++ .+++..-..++. .+..++..+++|++|
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~----~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~l 97 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLAS----KKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKL 97 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhh----cccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEe
Confidence 3345566778888888888888888888888776 35666666653 233333334444 345567778899999
Q ss_pred EcCCCCCChhHHHHHHHHHHhcCCCcCEEEccCCCCCCcccccCCCChhh------hhhcCCCCCCccEEEecCCCCChh
Q 007479 295 KLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLF------SLGAGKSLQSLRLLNLRGNNLCKA 368 (602)
Q Consensus 295 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~------~l~~l~~l~~L~~L~L~~n~l~~~ 368 (602)
|||+|.++..+++.+...+ +.+.+|++|.|.+|++.-... ..+.. ......+-++|+++...+|.+...
T Consensus 98 dLSDNA~G~~g~~~l~~ll-~s~~~L~eL~L~N~Glg~~ag----~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 98 DLSDNAFGPKGIRGLEELL-SSCTDLEELYLNNCGLGPEAG----GRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred eccccccCccchHHHHHHH-HhccCHHHHhhhcCCCChhHH----HHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 9999999999998887654 558999999999999864222 11111 112223456899999999999999
Q ss_pred hHHHHHHHhccCCCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCCCChHHHHHHHHHHhcCCCCCcEEE
Q 007479 369 DARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLS 448 (602)
Q Consensus 369 ~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~ 448 (602)
+...++..+...+.|+.+.++.|.|..+|+..+. .++..|++|+.|+|..|-++..+...+...++.++ +|+.|+
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~----eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~-~L~El~ 247 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALA----EALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP-HLRELN 247 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHH----HHHHhCCcceeeecccchhhhHHHHHHHHHhcccc-hheeec
Confidence 9999999999999999999999999999986554 77889999999999999999999999999999988 599999
Q ss_pred ccCCCCChHHHHHHHHHhc---CCccEEEeeccCCChhHHHHHHHHhhcCCCccEEeCcCCCC--ChHHHHHHHHhCccC
Q 007479 449 IADNNLGSHIAASLGKFFG---TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRG--GVETAKFLSKLMPLA 523 (602)
Q Consensus 449 Ls~n~l~~~~~~~l~~~l~---~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l--~~~~~~~l~~~l~~~ 523 (602)
+++|.+.+.+...+...+. ++|+.|.+.+|.|+..+...+...+..-+.|+.|+|++|++ ++.+...+...+...
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~~~~~~~ 327 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIASKFDTA 327 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHHHhcccc
Confidence 9999999888888887664 67999999999999998888888888888899999999998 667776666654322
Q ss_pred -CCccEEEccCCCCCHHHHHHHHHHHhhcCCCccEEEecCCCCCCChhHHHHHH
Q 007479 524 -PELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLS 576 (602)
Q Consensus 524 -~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~N~l~~~~~~~~~L~ 576 (602)
..+...+.+.+.+..++-+.......... .-+.++..+|.++ ..+...+.
T Consensus 328 ~~~~~~~~~s~e~l~~eg~e~e~~~~~~~~-t~~e~~ed~e~ie--~e~~ee~~ 378 (382)
T KOG1909|consen 328 HVLLEDIDDSEEELEREGEEDEEEEVEKKE-TFKELNEDGEVIE--EEGIEELK 378 (382)
T ss_pred cccchhhchhHHHHHhhhhhHHHHHHHhcC-cchhhcccccccc--hhHHHHhh
Confidence 34667778888888888777776655444 5677777778764 44444443
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=4.2e-26 Score=229.13 Aligned_cols=344 Identities=22% Similarity=0.274 Sum_probs=215.3
Q ss_pred hhhhcccccchHHhhHhhhccCCccEEEeccccchHHHHHHHHHHHhcCCCccEEEccCCCCCh-hHHHHHHHHhhcccc
Q 007479 176 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSP-SFVEGICRSLCSKRK 254 (602)
Q Consensus 176 l~~L~l~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~l~~~L~~~~~ 254 (602)
++.|.+.+......|..++.+.+|+.|.+++|.+...... ++.++.|+.+.+.+|.+.. +.|..+++
T Consensus 34 ~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE-----Ls~Lp~LRsv~~R~N~LKnsGiP~diF~------- 101 (1255)
T KOG0444|consen 34 MTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE-----LSDLPRLRSVIVRDNNLKNSGIPTDIFR------- 101 (1255)
T ss_pred eeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh-----hccchhhHHHhhhccccccCCCCchhcc-------
Confidence 4444444444445677788888999999988876554433 3677888888888887644 34555655
Q ss_pred cCCceeEEEecCCCCccCCcchHHHHHHHHhhcCCCccEEEcCCCCCChhHHHHHHHHHHhcCCCcCEEEccCCCCCCcc
Q 007479 255 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 334 (602)
Q Consensus 255 ~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~ 334 (602)
+..|..|++++|++.+ .|..+..-+++-.|+||+|+|. .+|.+++. ++..|-.||||+|++.. +
T Consensus 102 -l~dLt~lDLShNqL~E---------vP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfi----nLtDLLfLDLS~NrLe~-L 165 (1255)
T KOG0444|consen 102 -LKDLTILDLSHNQLRE---------VPTNLEYAKNSIVLNLSYNNIE-TIPNSLFI----NLTDLLFLDLSNNRLEM-L 165 (1255)
T ss_pred -cccceeeecchhhhhh---------cchhhhhhcCcEEEEcccCccc-cCCchHHH----hhHhHhhhccccchhhh-c
Confidence 7778888888888887 5555677788888888888886 56666543 35677788888888753 2
Q ss_pred cccCCCChhhhhhcCCCCCCccEEEecCCCCChhhHHHHHHHhccCCCccEEEecCCCCChhhHHhHHHHHHHhhcCCCC
Q 007479 335 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 414 (602)
Q Consensus 335 ~~~~~~~l~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~ 414 (602)
| +...++..|++|.|++|.+....++.+ -.+++|++|.+++..-+-.. +| .++..+.+
T Consensus 166 P-----------PQ~RRL~~LqtL~Ls~NPL~hfQLrQL----PsmtsL~vLhms~TqRTl~N----~P---tsld~l~N 223 (1255)
T KOG0444|consen 166 P-----------PQIRRLSMLQTLKLSNNPLNHFQLRQL----PSMTSLSVLHMSNTQRTLDN----IP---TSLDDLHN 223 (1255)
T ss_pred C-----------HHHHHHhhhhhhhcCCChhhHHHHhcC----ccchhhhhhhcccccchhhc----CC---Cchhhhhh
Confidence 2 334466777788888877766544433 33456666767665433110 33 44455566
Q ss_pred ccEEEcccCCCChHHHHHHHHHHhcCCCCCcEEEccCCCCChHHHHHHHHHhcCCccEEEeeccCCChhHHHHHHHHhhc
Q 007479 415 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTK 494 (602)
Q Consensus 415 L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 494 (602)
|..+++|.|.+.. +|+.+-++. +|+.|+||+|.|+ +.......+ .+|++|+++.|++ ..++.++.+
T Consensus 224 L~dvDlS~N~Lp~-----vPecly~l~-~LrrLNLS~N~it-eL~~~~~~W--~~lEtLNlSrNQL-----t~LP~avcK 289 (1255)
T KOG0444|consen 224 LRDVDLSENNLPI-----VPECLYKLR-NLRRLNLSGNKIT-ELNMTEGEW--ENLETLNLSRNQL-----TVLPDAVCK 289 (1255)
T ss_pred hhhccccccCCCc-----chHHHhhhh-hhheeccCcCcee-eeeccHHHH--hhhhhhccccchh-----ccchHHHhh
Confidence 7777777777665 566666555 4777777777766 333334444 6677777777766 344566666
Q ss_pred CCCccEEeCcCCCCChHHHHHHHHhCccCCCccEEEccCCCCCHHHHHHHHHHHhhcCCCccEEEecCCCCCCChhHHHH
Q 007479 495 ELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSM 574 (602)
Q Consensus 495 ~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~N~l~~~~~~~~~ 574 (602)
+++|+.|.+.+|+++-.| ++..++++..|+++..++|.+. -.++.++.. ..|+.|.|+.|++.--++++..
T Consensus 290 L~kL~kLy~n~NkL~FeG---iPSGIGKL~~Levf~aanN~LE-lVPEglcRC-----~kL~kL~L~~NrLiTLPeaIHl 360 (1255)
T KOG0444|consen 290 LTKLTKLYANNNKLTFEG---IPSGIGKLIQLEVFHAANNKLE-LVPEGLCRC-----VKLQKLKLDHNRLITLPEAIHL 360 (1255)
T ss_pred hHHHHHHHhccCcccccC---CccchhhhhhhHHHHhhccccc-cCchhhhhh-----HHHHHhcccccceeechhhhhh
Confidence 667777777777765544 3555666666777777666642 222333433 3566677777766434555554
Q ss_pred HHH---HHHcCCCeEEeCCCC
Q 007479 575 LSE---FRHNGLPILILPTLQ 592 (602)
Q Consensus 575 L~~---l~~~~~~~~~~~~~~ 592 (602)
|.. +....+|.+++|+-+
T Consensus 361 L~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 361 LPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred cCCcceeeccCCcCccCCCCc
Confidence 433 333455666665443
No 9
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.89 E-value=5.3e-22 Score=187.96 Aligned_cols=291 Identities=16% Similarity=0.151 Sum_probs=223.9
Q ss_pred HHHHhhcCCCccEEEcCCCCCChhHHHHHHHHHHhcCCCcCEEEccCCC---CCCcccccCCCChhhhhhcCCCCCCccE
Q 007479 281 LVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS---IGGWLSKYDRSGPLFSLGAGKSLQSLRL 357 (602)
Q Consensus 281 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~---i~~~~~~~~~~~l~~~l~~l~~l~~L~~ 357 (602)
+...+.....++.++||+|.++..-.+.++..+.+. +.|+..++++-. ..+.+| ..+.....++..+++|++
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~-~~L~~v~~sd~ftGR~~~Ei~----e~L~~l~~aL~~~~~L~~ 96 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASK-KELREVNLSDMFTGRLKDEIP----EALKMLSKALLGCPKLQK 96 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhc-ccceeeehHhhhcCCcHHHHH----HHHHHHHHHHhcCCceeE
Confidence 444456667888888888888877777777776544 577777777642 222333 222233345557788999
Q ss_pred EEecCCCCChhhHHHHHHHhccCCCccEEEecCCCCChhhHHhHHHHH-----HHhhcCCCCccEEEcccCCCChHHHHH
Q 007479 358 LNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYF-----VQASERCNPLVELYLENCELSGRGVSQ 432 (602)
Q Consensus 358 L~L~~n~l~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l-----~~~l~~~~~L~~L~L~~n~l~~~~~~~ 432 (602)
|+|++|.++..+++.+...+.+...|++|.|.+|.++..|.+.+...+ ....+.-++|+.+...+|.+.+.+...
T Consensus 97 ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~ 176 (382)
T KOG1909|consen 97 LDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATA 176 (382)
T ss_pred eeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHH
Confidence 999999999888888888888888999999999999887766643211 134455578999999999998888888
Q ss_pred HHHHHhcCCCCCcEEEccCCCCChHHHHHHHHHh--cCCccEEEeeccCCChhHHHHHHHHhhcCCCccEEeCcCCCCCh
Q 007479 433 LLDTLSTLRRPPTSLSIADNNLGSHIAASLGKFF--GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGV 510 (602)
Q Consensus 433 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l--~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~ 510 (602)
+...+...+ +|+.+.+..|.|...+...+...+ +++|+.|||.+|-++..|...++..++.+++|++|++++|.+..
T Consensus 177 ~A~~~~~~~-~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 177 LAEAFQSHP-TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred HHHHHHhcc-ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence 888888875 599999999988766665554433 38899999999999999989999999999999999999999998
Q ss_pred HHHHHHHHhCc-cCCCccEEEccCCCCCHHHHHHHHHHHhhcCCCccEEEecCCCCCCChhHHHHHHHH
Q 007479 511 ETAKFLSKLMP-LAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEF 578 (602)
Q Consensus 511 ~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~N~l~~~~~~~~~L~~l 578 (602)
.|+..+..++. ..|.|++|.+.+|.|+-++...++.++.. .+.|..|+|++|+++..++++..+++.
T Consensus 256 ~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~l~e~de~i~ei~~~ 323 (382)
T KOG1909|consen 256 EGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNRLGEKDEGIDEIASK 323 (382)
T ss_pred ccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCcccccccchhHHHHHHh
Confidence 88888887764 57899999999999998888888777766 568999999999986566677766653
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=7.7e-24 Score=213.00 Aligned_cols=342 Identities=19% Similarity=0.242 Sum_probs=255.7
Q ss_pred chhhhcccccch--HHhhHhhhccCCccEEEeccccchHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHhhcc
Q 007479 175 YARCLRLQNALC--VEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 252 (602)
Q Consensus 175 ~l~~L~l~~~~~--~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~L~~~ 252 (602)
.++-+++++.-. ...|....+|+.++-|.|....+...... ++.+.+|.+|.++||.+...+- .|..
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeE-----L~~lqkLEHLs~~HN~L~~vhG-----ELs~- 76 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEE-----LSRLQKLEHLSMAHNQLISVHG-----ELSD- 76 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHH-----HHHHhhhhhhhhhhhhhHhhhh-----hhcc-
Confidence 355555555322 24567788999999999976544333222 5778899999999998765332 2222
Q ss_pred cccCCceeEEEecCCCCccCCcchHHHHHHHHhhcCCCccEEEcCCCCCChhHHHHHHHHHHhcCCCcCEEEccCCCCCC
Q 007479 253 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (602)
Q Consensus 253 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~ 332 (602)
++.|+.+.+..|++...+ +|.-+-.+..|..||||+|.+. +.|..+ ....++-.|+||+|+|..
T Consensus 77 ---Lp~LRsv~~R~N~LKnsG-------iP~diF~l~dLt~lDLShNqL~-EvP~~L-----E~AKn~iVLNLS~N~Iet 140 (1255)
T KOG0444|consen 77 ---LPRLRSVIVRDNNLKNSG-------IPTDIFRLKDLTILDLSHNQLR-EVPTNL-----EYAKNSIVLNLSYNNIET 140 (1255)
T ss_pred ---chhhHHHhhhccccccCC-------CCchhcccccceeeecchhhhh-hcchhh-----hhhcCcEEEEcccCcccc
Confidence 677999999999887633 3444577899999999999998 677765 345899999999999964
Q ss_pred cccccCCCChhhhhhcCCCCCCccEEEecCCCCChhhHHHHHHHhccCCCccEEEecCCCCChhhHHhHHHHHHHhhcCC
Q 007479 333 WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERC 412 (602)
Q Consensus 333 ~~~~~~~~~l~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~ 412 (602)
+| ..+ +.++..|-.|+|++|.+.+ +|..+..+.+|+.|+|++|.+..-.+++ +..+
T Consensus 141 -IP--------n~l--finLtDLLfLDLS~NrLe~-----LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ--------LPsm 196 (1255)
T KOG0444|consen 141 -IP--------NSL--FINLTDLLFLDLSNNRLEM-----LPPQIRRLSMLQTLKLSNNPLNHFQLRQ--------LPSM 196 (1255)
T ss_pred -CC--------chH--HHhhHhHhhhccccchhhh-----cCHHHHHHhhhhhhhcCCChhhHHHHhc--------Cccc
Confidence 33 222 2256788899999999987 8889999999999999999998755444 3445
Q ss_pred CCccEEEcccCCCChHHHHHHHHHHhcCCCCCcEEEccCCCCChHHHHHHHHHhcCCccEEEeeccCCChhHHHHHHHHh
Q 007479 413 NPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGV 492 (602)
Q Consensus 413 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~L~~L~L~~n~l~~~~~~~l~~~l 492 (602)
++|+.|.+++.+-+-. .+|.++..+. +|..+|+|.|.+. ..|+.+.++ .+|+.|+|++|.|+...+ ..
T Consensus 197 tsL~vLhms~TqRTl~---N~Ptsld~l~-NL~dvDlS~N~Lp-~vPecly~l--~~LrrLNLS~N~iteL~~-----~~ 264 (1255)
T KOG0444|consen 197 TSLSVLHMSNTQRTLD---NIPTSLDDLH-NLRDVDLSENNLP-IVPECLYKL--RNLRRLNLSGNKITELNM-----TE 264 (1255)
T ss_pred hhhhhhhcccccchhh---cCCCchhhhh-hhhhccccccCCC-cchHHHhhh--hhhheeccCcCceeeeec-----cH
Confidence 7889999998874432 2444454444 5999999999999 889999999 999999999999976532 23
Q ss_pred hcCCCccEEeCcCCCCChHHHHHHHHhCccCCCccEEEccCCCCCHHHH-HHHHHHHhhcCCCccEEEecCCCCCCChhH
Q 007479 493 TKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESL-TIICSALKVAKGHLQRLDLTGNNWELQPSH 571 (602)
Q Consensus 493 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~-~~l~~~l~~~~~~L~~L~L~~N~l~~~~~~ 571 (602)
....+|+.|++|.|+++ .++.++.++++|+.|.+.+|.++-+|+ .-++.. ..|+.+..++|++.+-+++
T Consensus 265 ~~W~~lEtLNlSrNQLt-----~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL-----~~Levf~aanN~LElVPEg 334 (1255)
T KOG0444|consen 265 GEWENLETLNLSRNQLT-----VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL-----IQLEVFHAANNKLELVPEG 334 (1255)
T ss_pred HHHhhhhhhccccchhc-----cchHHHhhhHHHHHHHhccCcccccCCccchhhh-----hhhHHHHhhccccccCchh
Confidence 34558999999999984 456677789999999999999886554 334443 4789999999999988888
Q ss_pred HHH---HHHHHHcCCCeEEeC
Q 007479 572 VSM---LSEFRHNGLPILILP 589 (602)
Q Consensus 572 ~~~---L~~l~~~~~~~~~~~ 589 (602)
+.. |+++....+..+++|
T Consensus 335 lcRC~kL~kL~L~~NrLiTLP 355 (1255)
T KOG0444|consen 335 LCRCVKLQKLKLDHNRLITLP 355 (1255)
T ss_pred hhhhHHHHHhcccccceeech
Confidence 885 444444555555554
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=1e-21 Score=188.60 Aligned_cols=90 Identities=19% Similarity=0.231 Sum_probs=56.4
Q ss_pred CCccEEEeeccCCChhHHHHHHHHhhcCCCccEEeCcCCCCChHH-H-------HHH-----------HHhCccCCCccE
Q 007479 468 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVET-A-------KFL-----------SKLMPLAPELVE 528 (602)
Q Consensus 468 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~-~-------~~l-----------~~~l~~~~~L~~ 528 (602)
++|..|+|++|.+. .++..+.....|+.||||+|++..-. . +.+ ++.+..+.+|..
T Consensus 435 ~kLt~L~L~NN~Ln-----~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 435 QKLTFLDLSNNLLN-----DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred hcceeeecccchhh-----hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 67777888877763 33444445556888888877743211 0 000 122556788888
Q ss_pred EEccCCCCCHHHHHHHHHHHhhcCCCccEEEecCCCCCCC
Q 007479 529 VNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQ 568 (602)
Q Consensus 529 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~N~l~~~ 568 (602)
||+.+|.+. ..+..++.+ .+|++|+++||.|..+
T Consensus 510 LDL~nNdlq-~IPp~Lgnm-----tnL~hLeL~gNpfr~P 543 (565)
T KOG0472|consen 510 LDLQNNDLQ-QIPPILGNM-----TNLRHLELDGNPFRQP 543 (565)
T ss_pred eccCCCchh-hCChhhccc-----cceeEEEecCCccCCC
Confidence 888888864 333445444 6888888888888733
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=1.7e-19 Score=173.36 Aligned_cols=112 Identities=17% Similarity=0.219 Sum_probs=81.7
Q ss_pred hhcCCCCccEEEcccCCCChHHHHHHHHHHhcCCCCCcEEEccCCCCChHHHHHHHHHhcCCccEEEeeccCCChhHHHH
Q 007479 408 ASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRV 487 (602)
Q Consensus 408 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~L~~L~L~~n~l~~~~~~~ 487 (602)
.+...++|..|+|++|.+.+ +|..+..+.. |+.||++.|++. ..|+.+-.. ..++.+-.++|+++...
T Consensus 430 ~l~~l~kLt~L~L~NN~Ln~-----LP~e~~~lv~-Lq~LnlS~NrFr-~lP~~~y~l--q~lEtllas~nqi~~vd--- 497 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNLLND-----LPEEMGSLVR-LQTLNLSFNRFR-MLPECLYEL--QTLETLLASNNQIGSVD--- 497 (565)
T ss_pred HHHhhhcceeeecccchhhh-----cchhhhhhhh-hheecccccccc-cchHHHhhH--HHHHHHHhccccccccC---
Confidence 34455777777777777776 6666666664 777777777775 556655554 55666666667775544
Q ss_pred HHHHhhcCCCccEEeCcCCCCChHHHHHHHHhCccCCCccEEEccCCCCC
Q 007479 488 LQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMP 537 (602)
Q Consensus 488 l~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 537 (602)
+..+....+|..|||.+|.+ ..++..++++++|++|++++|.+.
T Consensus 498 -~~~l~nm~nL~tLDL~nNdl-----q~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 498 -PSGLKNMRNLTTLDLQNNDL-----QQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred -hHHhhhhhhcceeccCCCch-----hhCChhhccccceeEEEecCCccC
Confidence 33466677999999999987 455667899999999999999987
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.71 E-value=2.7e-19 Score=188.64 Aligned_cols=281 Identities=23% Similarity=0.286 Sum_probs=192.3
Q ss_pred CCccEEEccCCCCChhHHHHHHHHhhcccccCCceeEEEecCCCCccCCcchHHHHHHHHhhcCCCccEEEcCCCCCChh
Q 007479 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (602)
Q Consensus 225 ~~L~~L~L~~~~~~~~~~~~l~~~L~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 304 (602)
++|+.|+.++|.+........ -.+|++++++++.++. +++++..+.+|+.++..+|.+. .
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~----------p~nl~~~dis~n~l~~---------lp~wi~~~~nle~l~~n~N~l~-~ 278 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPV----------PLNLQYLDISHNNLSN---------LPEWIGACANLEALNANHNRLV-A 278 (1081)
T ss_pred cchheeeeccCcceeeccccc----------cccceeeecchhhhhc---------chHHHHhcccceEecccchhHH-h
Confidence 566666666666653221111 3457777888777776 6666777788888888888774 4
Q ss_pred HHHHHHHHHHhcCCCcCEEEccCCCCCCcccccCCCChhhhhhcCCCCCCccEEEecCCCCChhhHHHHHHHhcc-CC-C
Q 007479 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVH-IP-N 382 (602)
Q Consensus 305 ~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~-l~-~ 382 (602)
.|..+.. ..+|+.|....|.+.- ..+.+...+.|++|+|..|.|.. +|..+.. .. .
T Consensus 279 lp~ri~~-----~~~L~~l~~~~nel~y------------ip~~le~~~sL~tLdL~~N~L~~-----lp~~~l~v~~~~ 336 (1081)
T KOG0618|consen 279 LPLRISR-----ITSLVSLSAAYNELEY------------IPPFLEGLKSLRTLDLQSNNLPS-----LPDNFLAVLNAS 336 (1081)
T ss_pred hHHHHhh-----hhhHHHHHhhhhhhhh------------CCCcccccceeeeeeehhccccc-----cchHHHhhhhHH
Confidence 5555432 4677777777777642 22334457788999999998887 4443322 22 3
Q ss_pred ccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCCCChHHHHHHHHHHhcCCCCCcEEEccCCCCChHHHHHH
Q 007479 383 LEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGSHIAASL 462 (602)
Q Consensus 383 L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 462 (602)
|+.|+.+.|++.. .|.. .=...+.|+.|++.+|.+++.. ...+.... +|+.|+|++|++.......+
T Consensus 337 l~~ln~s~n~l~~------lp~~--~e~~~~~Lq~LylanN~Ltd~c----~p~l~~~~-hLKVLhLsyNrL~~fpas~~ 403 (1081)
T KOG0618|consen 337 LNTLNVSSNKLST------LPSY--EENNHAALQELYLANNHLTDSC----FPVLVNFK-HLKVLHLSYNRLNSFPASKL 403 (1081)
T ss_pred HHHHhhhhccccc------cccc--cchhhHHHHHHHHhcCcccccc----hhhhcccc-ceeeeeecccccccCCHHHH
Confidence 6777777787765 4422 1123467899999999999863 33444444 59999999999885555667
Q ss_pred HHHhcCCccEEEeeccCCChhHHHHHHHHhhcCCCccEEeCcCCCCChHHHHHHHHhCccCCCccEEEccCCCCCHHHHH
Q 007479 463 GKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLT 542 (602)
Q Consensus 463 ~~~l~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 542 (602)
.++ ..|++|+|+||.+ ..++..+..+..|+.|...+|++.. ++ -+..++.|+.+|+|.|+++.....
T Consensus 404 ~kl--e~LeeL~LSGNkL-----~~Lp~tva~~~~L~tL~ahsN~l~~-----fP-e~~~l~qL~~lDlS~N~L~~~~l~ 470 (1081)
T KOG0618|consen 404 RKL--EELEELNLSGNKL-----TTLPDTVANLGRLHTLRAHSNQLLS-----FP-ELAQLPQLKVLDLSCNNLSEVTLP 470 (1081)
T ss_pred hch--HHhHHHhcccchh-----hhhhHHHHhhhhhHHHhhcCCceee-----ch-hhhhcCcceEEecccchhhhhhhh
Confidence 777 8899999999998 5566777778889999999998643 33 245589999999999999866654
Q ss_pred HHHHHHhhcCCCccEEEecCCCC-CCChhHHHHHHHH
Q 007479 543 IICSALKVAKGHLQRLDLTGNNW-ELQPSHVSMLSEF 578 (602)
Q Consensus 543 ~l~~~l~~~~~~L~~L~L~~N~l-~~~~~~~~~L~~l 578 (602)
..... ++|++||++||.. ..+.+.++.++.+
T Consensus 471 ~~~p~-----p~LkyLdlSGN~~l~~d~~~l~~l~~l 502 (1081)
T KOG0618|consen 471 EALPS-----PNLKYLDLSGNTRLVFDHKTLKVLKSL 502 (1081)
T ss_pred hhCCC-----cccceeeccCCcccccchhhhHHhhhh
Confidence 43332 6899999999974 3444555555544
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.68 E-value=7e-18 Score=178.16 Aligned_cols=340 Identities=22% Similarity=0.214 Sum_probs=196.8
Q ss_pred chhhhcccccchHHhhHhhhccCCccEEEeccccchHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHhhcccc
Q 007479 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 254 (602)
Q Consensus 175 ~l~~L~l~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~L~~~~~ 254 (602)
+++.+.+........+...++|.+|+++.|.+|..... +..+..+.+|+.|++++|.|... |.-+..
T Consensus 69 ~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~l-----P~~~~~lknl~~LdlS~N~f~~~-Pl~i~~------- 135 (1081)
T KOG0618|consen 69 HLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSL-----PASISELKNLQYLDLSFNHFGPI-PLVIEV------- 135 (1081)
T ss_pred HHhhcccchhhHhhCchhhhhhhcchhheeccchhhcC-----chhHHhhhcccccccchhccCCC-chhHHh-------
Confidence 57777777766666677788899999999988854332 22356778999999999988663 222221
Q ss_pred cCCceeEEEecCCCCccCCcchHHHHHHHHhhcCCCccEEEcCCCCCChhHHHHHHHH--------------HHhcCCCc
Q 007479 255 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSS--------------LLEASSSL 320 (602)
Q Consensus 255 ~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~--------------l~~~~~~L 320 (602)
+..++.+..++|.... . ++... ++++++..|.+.+.++..+... -...+..|
T Consensus 136 -lt~~~~~~~s~N~~~~----~--------lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l 201 (1081)
T KOG0618|consen 136 -LTAEEELAASNNEKIQ----R--------LGQTS-IKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANL 201 (1081)
T ss_pred -hhHHHHHhhhcchhhh----h--------hcccc-chhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccch
Confidence 2223444444441111 0 11111 4444444444444433332100 01123444
Q ss_pred CEEEccCCCCCCcccccCCCChhhhhhcCCCCCCccEEEecCCCCChhhHHHHHHHhccCCCccEEEecCCCCChhhHHh
Q 007479 321 SILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRS 400 (602)
Q Consensus 321 ~~L~Ls~n~i~~~~~~~~~~~l~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~ 400 (602)
+.+..+.|.+.. -.+ .-++|+.|....|.++.. -. -....+|+.++++.|.++.
T Consensus 202 ~~l~c~rn~ls~-----------l~~----~g~~l~~L~a~~n~l~~~-----~~-~p~p~nl~~~dis~n~l~~----- 255 (1081)
T KOG0618|consen 202 EVLHCERNQLSE-----------LEI----SGPSLTALYADHNPLTTL-----DV-HPVPLNLQYLDISHNNLSN----- 255 (1081)
T ss_pred hhhhhhhcccce-----------EEe----cCcchheeeeccCcceee-----cc-ccccccceeeecchhhhhc-----
Confidence 444444444322 000 124566666666666531 11 1223467777777777765
Q ss_pred HHHHHHHhhcCCCCccEEEcccCCCChHHHHHHHHHHhcCCCCCcEEEccCCCCChHHHHHHHHHhcCCccEEEeeccCC
Q 007479 401 LIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGSHIAASLGKFFGTSVQVLNIGAIGL 480 (602)
Q Consensus 401 l~p~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~L~~L~L~~n~l 480 (602)
+| +.++.+.+|+.+...+|+++. ++..+.... +|+.|++..|.+. -.+..+.+. ++|++|+|..|.|
T Consensus 256 -lp---~wi~~~~nle~l~~n~N~l~~-----lp~ri~~~~-~L~~l~~~~nel~-yip~~le~~--~sL~tLdL~~N~L 322 (1081)
T KOG0618|consen 256 -LP---EWIGACANLEALNANHNRLVA-----LPLRISRIT-SLVSLSAAYNELE-YIPPFLEGL--KSLRTLDLQSNNL 322 (1081)
T ss_pred -ch---HHHHhcccceEecccchhHHh-----hHHHHhhhh-hHHHHHhhhhhhh-hCCCccccc--ceeeeeeehhccc
Confidence 55 455566777777777777755 455555444 3777777777665 344444445 7899999999987
Q ss_pred ChhHHHHHH----------HH---hhc--------CCCccEEeCcCCCCChHHHHHHHHhCccCCCccEEEccCCCCCHH
Q 007479 481 GSSGFRVLQ----------DG---VTK--------ELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLE 539 (602)
Q Consensus 481 ~~~~~~~l~----------~~---l~~--------~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 539 (602)
.+..-..+. .. ++. .+.|+.|++.+|.+++..... +...++|+.|+|++|++...
T Consensus 323 ~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~----l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 323 PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV----LVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh----hccccceeeeeecccccccC
Confidence 553211110 00 000 123777788888888766533 45689999999999987755
Q ss_pred HHHHHHHHHhhcCCCccEEEecCCCCCCChhHHH---HHHHHHHcCCCeEEeC
Q 007479 540 SLTIICSALKVAKGHLQRLDLTGNNWELQPSHVS---MLSEFRHNGLPILILP 589 (602)
Q Consensus 540 ~~~~l~~~l~~~~~~L~~L~L~~N~l~~~~~~~~---~L~~l~~~~~~~~~~~ 589 (602)
....+... ..|+.|+||||+++--+..+. .|..+..++|.+..+|
T Consensus 399 pas~~~kl-----e~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP 446 (1081)
T KOG0618|consen 399 PASKLRKL-----EELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP 446 (1081)
T ss_pred CHHHHhch-----HHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech
Confidence 55444443 469999999999963333333 5666777777777666
No 15
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.68 E-value=6.6e-17 Score=168.23 Aligned_cols=369 Identities=21% Similarity=0.198 Sum_probs=292.1
Q ss_pred CccEEEeccccchHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHhhcccccCCceeEEEecCCCCccCCcchH
Q 007479 198 KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV 277 (602)
Q Consensus 198 ~L~~L~Ls~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~L~~~~~~~~~L~~L~l~~~~l~~~~~~~l 277 (602)
.+..+.|.+|.+...........+...++|+.|+++.|.+++.+...++..+..+ -+.+++|.+..|.++..+...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~---~~~l~~L~l~~c~l~~~g~~~- 163 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLP---QCLLQTLELVSCSLTSEGAAP- 163 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccc---hHHHHHHHhhcccccccchHH-
Confidence 3677888888776665555666677889999999999999999999999998875 478999999999999955555
Q ss_pred HHHHHHHhhcCCCccEEEcCCCCCChhHHHHHHHHHHh---cCCCcCEEEccCCCCCCcccccCCCChhhhhhcCCCCCC
Q 007479 278 VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLE---ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 354 (602)
Q Consensus 278 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~---~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~~l~~l~~l~~ 354 (602)
+.+.+....+++.++++.|.+...+...++..+.. ...++++|++++|.++.. .|..+...+. ..+.
T Consensus 164 ---l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~----~c~~l~~~l~---~~~~ 233 (478)
T KOG4308|consen 164 ---LAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSS----SCALLDEVLA---SGES 233 (478)
T ss_pred ---HHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChH----HHHHHHHHHh---ccch
Confidence 55556778999999999999988888888888775 678999999999999852 2233334444 3344
Q ss_pred -ccEEEecCCCCChhhHHHHHHHhccC-CCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCCCChHHHHH
Q 007479 355 -LRLLNLRGNNLCKADARDLGSALVHI-PNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ 432 (602)
Q Consensus 355 -L~~L~L~~n~l~~~~~~~l~~~l~~l-~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 432 (602)
+..|++..|.+.+.+++.+...+... ..+++++++.|.|++.|++.+. ..+..+..++++.+++|.+++.+...
T Consensus 234 ~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~----~~l~~~~~l~~l~l~~n~l~~~~~~~ 309 (478)
T KOG4308|consen 234 LLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA----EVLVSCRQLEELSLSNNPLTDYGVEL 309 (478)
T ss_pred hhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH----HHHhhhHHHHHhhcccCccccHHHHH
Confidence 77799999999999999999999988 7999999999999999998877 55666789999999999999999998
Q ss_pred HHHHHhcCCCCCcEEEccCCCCChHHHH-HHHHHh--cCCccEEEeeccCCChhHHHHHHHHhhcCC-CccEEeCcCCCC
Q 007479 433 LLDTLSTLRRPPTSLSIADNNLGSHIAA-SLGKFF--GTSVQVLNIGAIGLGSSGFRVLQDGVTKEL-KLVNINISKNRG 508 (602)
Q Consensus 433 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~-~l~~~l--~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~N~l 508 (602)
+...+..... +..+-+.++........ .+.... ...+.....+++...+.+...+......-. .+..+++..+.+
T Consensus 310 ~~~~l~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 388 (478)
T KOG4308|consen 310 LLEALERKTP-LLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVI 388 (478)
T ss_pred HHHHhhhccc-chhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhcccc
Confidence 8888887654 78888886655433332 222221 144666778888888887777766666544 388889888888
Q ss_pred ChHHHHHHHHhCccCCCccEEEccCCCCCHHHHHHHHHHHhhcCCCccEEEecCCCCCCChhHHHHHHHHHHcCCCeEEe
Q 007479 509 GVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNGLPILIL 588 (602)
Q Consensus 509 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~N~l~~~~~~~~~L~~l~~~~~~~~~~ 588 (602)
...+...++..+..++.++.++++.|...+++...+....+.+. .++.++++.|.++ ..+...+.+....+..+..+
T Consensus 389 ~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~ 465 (478)
T KOG4308|consen 389 EGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPIT--ALGTEELQRALALNPGILAI 465 (478)
T ss_pred ccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhh--hcchHHHHHHHhcCCCccee
Confidence 88888888888889999999999999999999999999999998 9999999999986 44555555555555444433
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.64 E-value=4.2e-16 Score=170.74 Aligned_cols=261 Identities=20% Similarity=0.220 Sum_probs=151.9
Q ss_pred CCccEEEccCCCCChhHHHHHHHHhhcccccCCceeEEEecCCCCccCCcchHHHHHHHHhhcCCCccEEEcCCCCCChh
Q 007479 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (602)
Q Consensus 225 ~~L~~L~L~~~~~~~~~~~~l~~~L~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 304 (602)
.+.+.|+++++.++. .|..+ ..+|+.|++++|.++. ++..+. .+|+.|++++|.++ .
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~I----------p~~L~~L~Ls~N~Lts---------LP~~l~--~nL~~L~Ls~N~Lt-s 234 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACI----------PEQITTLILDNNELKS---------LPENLQ--GNIKTLYANSNQLT-S 234 (754)
T ss_pred cCceEEEeCCCCcCc-CCccc----------ccCCcEEEecCCCCCc---------CChhhc--cCCCEEECCCCccc-c
Confidence 356777777776664 22222 2347777777777775 222222 46778888877776 3
Q ss_pred HHHHHHHHHHhcCCCcCEEEccCCCCCCcccccCCCChhhhhhcCCCCCCccEEEecCCCCChhhHHHHHHHhccCCCcc
Q 007479 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLE 384 (602)
Q Consensus 305 ~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~L~ 384 (602)
+|..+ ..+|+.|+|++|.+.. +| ..++ ++|+.|++++|.++. +|..+. ++|+
T Consensus 235 LP~~l-------~~~L~~L~Ls~N~L~~-LP--------~~l~-----s~L~~L~Ls~N~L~~-----LP~~l~--~sL~ 286 (754)
T PRK15370 235 IPATL-------PDTIQEMELSINRITE-LP--------ERLP-----SALQSLDLFHNKISC-----LPENLP--EELR 286 (754)
T ss_pred CChhh-------hccccEEECcCCccCc-CC--------hhHh-----CCCCEEECcCCccCc-----cccccC--CCCc
Confidence 44332 2467778888777763 33 3232 367777887777764 444332 4677
Q ss_pred EEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCCCChHHHHHHHHHHhcCCCCCcEEEccCCCCChHHHHHHHH
Q 007479 385 ILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGSHIAASLGK 464 (602)
Q Consensus 385 ~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 464 (602)
.|++++|.++. +| ..+. .+|+.|++++|.++. ++..+. .+|+.|++++|.++. .+..+
T Consensus 287 ~L~Ls~N~Lt~------LP---~~lp--~sL~~L~Ls~N~Lt~-----LP~~l~---~sL~~L~Ls~N~Lt~-LP~~l-- 344 (754)
T PRK15370 287 YLSVYDNSIRT------LP---AHLP--SGITHLNVQSNSLTA-----LPETLP---PGLKTLEAGENALTS-LPASL-- 344 (754)
T ss_pred EEECCCCcccc------Cc---ccch--hhHHHHHhcCCcccc-----CCcccc---ccceeccccCCcccc-CChhh--
Confidence 88888877764 33 2221 457777777777765 333222 247778888777763 33322
Q ss_pred HhcCCccEEEeeccCCChhHHHHHHHHhhcCCCccEEeCcCCCCChHHHHHHHHhCccCCCccEEEccCCCCCHHHHHHH
Q 007479 465 FFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTII 544 (602)
Q Consensus 465 ~l~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 544 (602)
.++|+.|++++|.++.. +..++ ++|++|+|++|+++.... .+ .+.|+.|++++|++. ..+..+
T Consensus 345 --~~sL~~L~Ls~N~L~~L-----P~~lp--~~L~~LdLs~N~Lt~LP~-~l------~~sL~~LdLs~N~L~-~LP~sl 407 (754)
T PRK15370 345 --PPELQVLDVSKNQITVL-----PETLP--PTITTLDVSRNALTNLPE-NL------PAALQIMQASRNNLV-RLPESL 407 (754)
T ss_pred --cCcccEEECCCCCCCcC-----Chhhc--CCcCEEECCCCcCCCCCH-hH------HHHHHHHhhccCCcc-cCchhH
Confidence 26777888888777532 22232 467788888887653221 11 125777778888775 222233
Q ss_pred HHHHhhcCCCccEEEecCCCCCCChhHHHHHHHH
Q 007479 545 CSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEF 578 (602)
Q Consensus 545 ~~~l~~~~~~L~~L~L~~N~l~~~~~~~~~L~~l 578 (602)
..... ..+.+..|++.+|.++ ...+..+..+
T Consensus 408 ~~~~~-~~~~l~~L~L~~Npls--~~tl~~L~~L 438 (754)
T PRK15370 408 PHFRG-EGPQPTRIIVEYNPFS--ERTIQNMQRL 438 (754)
T ss_pred HHHhh-cCCCccEEEeeCCCcc--HHHHHHHHHh
Confidence 32222 2246777888888775 4455555444
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=2.1e-16 Score=172.07 Aligned_cols=258 Identities=18% Similarity=0.135 Sum_probs=154.3
Q ss_pred CCccEEEeccccchHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHhhcccccCCceeEEEecCCCCccCCcch
Q 007479 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (602)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~L~~~~~~~~~L~~L~l~~~~l~~~~~~~ 276 (602)
.+-..|+++.+.+.. ++.. +. ++|+.|++++|.++.. +. . .++|++|++++|.++.
T Consensus 201 ~~~~~LdLs~~~Lts-LP~~----l~--~~L~~L~L~~N~Lt~L-P~--------l---p~~Lk~LdLs~N~Lts----- 256 (788)
T PRK15387 201 NGNAVLNVGESGLTT-LPDC----LP--AHITTLVIPDNNLTSL-PA--------L---PPELRTLEVSGNQLTS----- 256 (788)
T ss_pred CCCcEEEcCCCCCCc-CCcc----hh--cCCCEEEccCCcCCCC-CC--------C---CCCCcEEEecCCccCc-----
Confidence 335567777765542 2221 11 3677888887777642 11 1 4567888888887775
Q ss_pred HHHHHHHHhhcCCCccEEEcCCCCCChhHHHHHHHHHHhcCCCcCEEEccCCCCCCcccccCCCChhhhhhcCCCCCCcc
Q 007479 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (602)
Q Consensus 277 l~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~~l~~l~~l~~L~ 356 (602)
++. ..++|+.|++++|.+.. .+.. ..+|+.|++++|.++. +| . ..++|+
T Consensus 257 ----LP~---lp~sL~~L~Ls~N~L~~-Lp~l--------p~~L~~L~Ls~N~Lt~-LP--------~------~p~~L~ 305 (788)
T PRK15387 257 ----LPV---LPPGLLELSIFSNPLTH-LPAL--------PSGLCKLWIFGNQLTS-LP--------V------LPPGLQ 305 (788)
T ss_pred ----ccC---cccccceeeccCCchhh-hhhc--------hhhcCEEECcCCcccc-cc--------c------cccccc
Confidence 221 12577788888877763 3321 2567778888877763 22 1 124678
Q ss_pred EEEecCCCCChhhHHHHHHHhccCCCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCCCChHHHHHHHHH
Q 007479 357 LLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDT 436 (602)
Q Consensus 357 ~L~L~~n~l~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 436 (602)
.|++++|.++. ++. ...+|+.|++++|.++. +|. . ..+|+.|++++|.|+. ++..
T Consensus 306 ~LdLS~N~L~~-----Lp~---lp~~L~~L~Ls~N~L~~------LP~---l---p~~Lq~LdLS~N~Ls~-----LP~l 360 (788)
T PRK15387 306 ELSVSDNQLAS-----LPA---LPSELCKLWAYNNQLTS------LPT---L---PSGLQELSVSDNQLAS-----LPTL 360 (788)
T ss_pred eeECCCCcccc-----CCC---CcccccccccccCcccc------ccc---c---ccccceEecCCCccCC-----CCCC
Confidence 88888887775 332 12357777777777765 441 1 1467788888887776 3321
Q ss_pred HhcCCCCCcEEEccCCCCChHHHHHHHHHhcCCccEEEeeccCCChhHHHHHHHHhhcCCCccEEeCcCCCCChHHHHHH
Q 007479 437 LSTLRRPPTSLSIADNNLGSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFL 516 (602)
Q Consensus 437 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~l 516 (602)
..+|+.|++++|.++. ++.. . .+|+.|++++|.|+... . ..++|+.|++++|+++..
T Consensus 361 ----p~~L~~L~Ls~N~L~~-LP~l---~--~~L~~LdLs~N~Lt~LP-----~---l~s~L~~LdLS~N~LssI----- 417 (788)
T PRK15387 361 ----PSELYKLWAYNNRLTS-LPAL---P--SGLKELIVSGNRLTSLP-----V---LPSELKELMVSGNRLTSL----- 417 (788)
T ss_pred ----Ccccceehhhcccccc-Cccc---c--cccceEEecCCcccCCC-----C---cccCCCEEEccCCcCCCC-----
Confidence 2247777888887763 3321 1 56788888888775321 1 124677888888876522
Q ss_pred HHhCccCCCccEEEccCCCCCHHHHHHHHHHHhhcCCCccEEEecCCCCC
Q 007479 517 SKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWE 566 (602)
Q Consensus 517 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~N~l~ 566 (602)
+. ...+|+.|++++|+|+. .+..+... ++|+.|+|++|+++
T Consensus 418 P~---l~~~L~~L~Ls~NqLt~-LP~sl~~L-----~~L~~LdLs~N~Ls 458 (788)
T PRK15387 418 PM---LPSGLLSLSVYRNQLTR-LPESLIHL-----SSETTVNLEGNPLS 458 (788)
T ss_pred Cc---chhhhhhhhhccCcccc-cChHHhhc-----cCCCeEECCCCCCC
Confidence 11 12457778888888762 33334433 47788888888875
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=1.6e-16 Score=173.02 Aligned_cols=247 Identities=20% Similarity=0.175 Sum_probs=173.4
Q ss_pred CCccEEEeccccchHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHhhcccccCCceeEEEecCCCCccCCcch
Q 007479 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (602)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~L~~~~~~~~~L~~L~l~~~~l~~~~~~~ 276 (602)
.+|++|++++|.++.. + ...++|++|++++|.++.. +.. ..+|++|++.+|.++.
T Consensus 222 ~~L~~L~L~~N~Lt~L-P-------~lp~~Lk~LdLs~N~LtsL-P~l-----------p~sL~~L~Ls~N~L~~----- 276 (788)
T PRK15387 222 AHITTLVIPDNNLTSL-P-------ALPPELRTLEVSGNQLTSL-PVL-----------PPGLLELSIFSNPLTH----- 276 (788)
T ss_pred cCCCEEEccCCcCCCC-C-------CCCCCCcEEEecCCccCcc-cCc-----------ccccceeeccCCchhh-----
Confidence 3688899988866531 1 1347899999999988753 211 3568999999998875
Q ss_pred HHHHHHHHhhcCCCccEEEcCCCCCChhHHHHHHHHHHhcCCCcCEEEccCCCCCCcccccCCCChhhhhhcCCCCCCcc
Q 007479 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (602)
Q Consensus 277 l~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~~l~~l~~l~~L~ 356 (602)
++.. ..+|+.|++++|.++. .|. ..++|++|++++|.+++ +| . + ..+|+
T Consensus 277 ----Lp~l---p~~L~~L~Ls~N~Lt~-LP~--------~p~~L~~LdLS~N~L~~-Lp--------~-l-----p~~L~ 325 (788)
T PRK15387 277 ----LPAL---PSGLCKLWIFGNQLTS-LPV--------LPPGLQELSVSDNQLAS-LP--------A-L-----PSELC 325 (788)
T ss_pred ----hhhc---hhhcCEEECcCCcccc-ccc--------cccccceeECCCCcccc-CC--------C-C-----ccccc
Confidence 3322 2568899999999884 332 13679999999998875 22 1 1 13678
Q ss_pred EEEecCCCCChhhHHHHHHHhccCCCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCCCChHHHHHHHHH
Q 007479 357 LLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDT 436 (602)
Q Consensus 357 ~L~L~~n~l~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 436 (602)
.|++++|.++. +|. -..+|+.|++++|.++. +| .. ..+|+.|++++|.++. ++..
T Consensus 326 ~L~Ls~N~L~~-----LP~---lp~~Lq~LdLS~N~Ls~------LP---~l---p~~L~~L~Ls~N~L~~-----LP~l 380 (788)
T PRK15387 326 KLWAYNNQLTS-----LPT---LPSGLQELSVSDNQLAS------LP---TL---PSELYKLWAYNNRLTS-----LPAL 380 (788)
T ss_pred ccccccCcccc-----ccc---cccccceEecCCCccCC------CC---CC---Ccccceehhhcccccc-----Cccc
Confidence 88899998875 442 12478999999999886 55 21 2578889999998886 3332
Q ss_pred HhcCCCCCcEEEccCCCCChHHHHHHHHHhcCCccEEEeeccCCChhHHHHHHHHhhcCCCccEEeCcCCCCChHHHHHH
Q 007479 437 LSTLRRPPTSLSIADNNLGSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFL 516 (602)
Q Consensus 437 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~l 516 (602)
. .+|+.|++++|.++. .+.. . ++|+.|++++|.++... .. ..+|+.|++++|+++. +
T Consensus 381 ~----~~L~~LdLs~N~Lt~-LP~l---~--s~L~~LdLS~N~LssIP-----~l---~~~L~~L~Ls~NqLt~-----L 437 (788)
T PRK15387 381 P----SGLKELIVSGNRLTS-LPVL---P--SELKELMVSGNRLTSLP-----ML---PSGLLSLSVYRNQLTR-----L 437 (788)
T ss_pred c----cccceEEecCCcccC-CCCc---c--cCCCEEEccCCcCCCCC-----cc---hhhhhhhhhccCcccc-----c
Confidence 2 259999999998873 3321 2 67899999999885321 11 1368889999999863 3
Q ss_pred HHhCccCCCccEEEccCCCCCHHHHHHHHHH
Q 007479 517 SKLMPLAPELVEVNAGYNLMPLESLTIICSA 547 (602)
Q Consensus 517 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 547 (602)
+..+..+++|+.|+|++|.+++..+..+...
T Consensus 438 P~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 438 PESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred ChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 4445568899999999999998877776443
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.63 E-value=3.9e-16 Score=171.02 Aligned_cols=260 Identities=18% Similarity=0.247 Sum_probs=181.8
Q ss_pred CCccEEEeccccchHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHhhcccccCCceeEEEecCCCCccCCcch
Q 007479 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (602)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~L~~~~~~~~~L~~L~l~~~~l~~~~~~~ 276 (602)
.+...|+++++.+... +.. + .++|+.|++++|.+... +..+ ..+|++|++++|.++.
T Consensus 178 ~~~~~L~L~~~~LtsL-P~~----I--p~~L~~L~Ls~N~LtsL-P~~l----------~~nL~~L~Ls~N~Lts----- 234 (754)
T PRK15370 178 NNKTELRLKILGLTTI-PAC----I--PEQITTLILDNNELKSL-PENL----------QGNIKTLYANSNQLTS----- 234 (754)
T ss_pred cCceEEEeCCCCcCcC-Ccc----c--ccCCcEEEecCCCCCcC-Chhh----------ccCCCEEECCCCcccc-----
Confidence 4567888887755432 111 1 24799999999988853 3322 3469999999998875
Q ss_pred HHHHHHHHhhcCCCccEEEcCCCCCChhHHHHHHHHHHhcCCCcCEEEccCCCCCCcccccCCCChhhhhhcCCCCCCcc
Q 007479 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (602)
Q Consensus 277 l~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~~l~~l~~l~~L~ 356 (602)
+|.. +. .+|+.|+|++|.+. .+|..+ ..+|++|++++|.++. +| ..++ .+|+
T Consensus 235 LP~~----l~--~~L~~L~Ls~N~L~-~LP~~l-------~s~L~~L~Ls~N~L~~-LP--------~~l~-----~sL~ 286 (754)
T PRK15370 235 IPAT----LP--DTIQEMELSINRIT-ELPERL-------PSALQSLDLFHNKISC-LP--------ENLP-----EELR 286 (754)
T ss_pred CChh----hh--ccccEEECcCCccC-cCChhH-------hCCCCEEECcCCccCc-cc--------cccC-----CCCc
Confidence 3333 22 47999999999988 455544 2579999999998874 34 2222 4799
Q ss_pred EEEecCCCCChhhHHHHHHHhccCCCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCCCChHHHHHHHHH
Q 007479 357 LLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDT 436 (602)
Q Consensus 357 ~L~L~~n~l~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 436 (602)
.|++++|.++. ++..+. ++|+.|++++|.++. +| ..+ .++|+.|++++|.++. ++..
T Consensus 287 ~L~Ls~N~Lt~-----LP~~lp--~sL~~L~Ls~N~Lt~------LP---~~l--~~sL~~L~Ls~N~Lt~-----LP~~ 343 (754)
T PRK15370 287 YLSVYDNSIRT-----LPAHLP--SGITHLNVQSNSLTA------LP---ETL--PPGLKTLEAGENALTS-----LPAS 343 (754)
T ss_pred EEECCCCcccc-----Ccccch--hhHHHHHhcCCcccc------CC---ccc--cccceeccccCCcccc-----CChh
Confidence 99999999885 443332 478899999999875 44 222 2689999999999887 4444
Q ss_pred HhcCCCCCcEEEccCCCCChHHHHHHHHHhcCCccEEEeeccCCChhHHHHHHHHhhcCCCccEEeCcCCCCChHHHHHH
Q 007479 437 LSTLRRPPTSLSIADNNLGSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFL 516 (602)
Q Consensus 437 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~l 516 (602)
+. .+|+.|++++|.++ ..+..+ .++|+.|++++|.++.. +..++ ..|+.|++++|++.... ..+
T Consensus 344 l~---~sL~~L~Ls~N~L~-~LP~~l----p~~L~~LdLs~N~Lt~L-----P~~l~--~sL~~LdLs~N~L~~LP-~sl 407 (754)
T PRK15370 344 LP---PELQVLDVSKNQIT-VLPETL----PPTITTLDVSRNALTNL-----PENLP--AALQIMQASRNNLVRLP-ESL 407 (754)
T ss_pred hc---CcccEEECCCCCCC-cCChhh----cCCcCEEECCCCcCCCC-----CHhHH--HHHHHHhhccCCcccCc-hhH
Confidence 43 35999999999987 344433 27899999999998643 22232 25889999999976332 344
Q ss_pred HHhCccCCCccEEEccCCCCCHHHHHHHHH
Q 007479 517 SKLMPLAPELVEVNAGYNLMPLESLTIICS 546 (602)
Q Consensus 517 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 546 (602)
+...+..+.+..|++.+|.++......+-.
T Consensus 408 ~~~~~~~~~l~~L~L~~Npls~~tl~~L~~ 437 (754)
T PRK15370 408 PHFRGEGPQPTRIIVEYNPFSERTIQNMQR 437 (754)
T ss_pred HHHhhcCCCccEEEeeCCCccHHHHHHHHH
Confidence 555556789999999999998766655533
No 20
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.61 E-value=5.6e-15 Score=135.58 Aligned_cols=289 Identities=15% Similarity=0.115 Sum_probs=215.7
Q ss_pred HHhhcCCCccEEEcCCCCCChhHHHHHHHHHHhcCCCcCEEEccCCCC---CCcccccCCCChhhhhhcCCCCCCccEEE
Q 007479 283 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSI---GGWLSKYDRSGPLFSLGAGKSLQSLRLLN 359 (602)
Q Consensus 283 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i---~~~~~~~~~~~l~~~l~~l~~l~~L~~L~ 359 (602)
.-+..+..++.++||+|.|+....+.++..+.. -.+|+..+++.-.. .+.++ +.+...++++-.|+.|+..+
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~-~~~L~vvnfsd~ftgr~kde~~----~~L~~Ll~aLlkcp~l~~v~ 98 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIAN-VRNLRVVNFSDAFTGRDKDELY----SNLVMLLKALLKCPRLQKVD 98 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhh-hcceeEeehhhhhhcccHHHHH----HHHHHHHHHHhcCCcceeee
Confidence 334557889999999999998888888876544 47788888776432 22333 33445667778999999999
Q ss_pred ecCCCCChhhHHHHHHHhccCCCccEEEecCCCCChhhHHhHHHHHH-----HhhcCCCCccEEEcccCCCChHHHHHHH
Q 007479 360 LRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFV-----QASERCNPLVELYLENCELSGRGVSQLL 434 (602)
Q Consensus 360 L~~n~l~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~-----~~l~~~~~L~~L~L~~n~l~~~~~~~l~ 434 (602)
|+.|.++.+..+.+...+++...|++|.+++|.++.-+..-+-..++ .....-+.|+......|.+..-....+.
T Consensus 99 LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a 178 (388)
T COG5238 99 LSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSA 178 (388)
T ss_pred ccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHH
Confidence 99999999888889999999999999999999988654333221111 2334457899999999998776555555
Q ss_pred HHHhcCCCCCcEEEccCCCCChHHHHHHHH---HhcCCccEEEeeccCCChhHHHHHHHHhhcCCCccEEeCcCCCCChH
Q 007479 435 DTLSTLRRPPTSLSIADNNLGSHIAASLGK---FFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVE 511 (602)
Q Consensus 435 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~---~l~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~ 511 (602)
..+..- .+|+.+.+..|.|...+...+.. .-+.+|+.|||.+|.+|..|-..++..++..+.|++|.+..|-++..
T Consensus 179 ~~l~sh-~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~ 257 (388)
T COG5238 179 ALLESH-ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE 257 (388)
T ss_pred HHHHhh-cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc
Confidence 555543 46999999999998776665532 12378999999999999999999999999999999999999998888
Q ss_pred HHHHHHHhCc--cCCCccEEEccCCCCCHHHHHH--HHHHHhhcCCCccEEEecCCCCCCChhHHHHHHH
Q 007479 512 TAKFLSKLMP--LAPELVEVNAGYNLMPLESLTI--ICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSE 577 (602)
Q Consensus 512 ~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~--l~~~l~~~~~~L~~L~L~~N~l~~~~~~~~~L~~ 577 (602)
|+..+...+. ..|+|+.|...+|.+....+.. +-..-+...+-|..|.+.||++.........++.
T Consensus 258 G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~d~~d~~~~ 327 (388)
T COG5238 258 GVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELADFGDYYED 327 (388)
T ss_pred cHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHHHHHHHHHH
Confidence 8777655543 5789999999999876655544 3344444556788888999999744444444444
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.58 E-value=1.7e-15 Score=177.27 Aligned_cols=149 Identities=17% Similarity=0.146 Sum_probs=82.7
Q ss_pred chhhhcccccchHHhhHhhhccCCccEEEeccccchHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHhhcccc
Q 007479 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 254 (602)
Q Consensus 175 ~l~~L~l~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~L~~~~~ 254 (602)
.++.|.+........+..+ ...+|++|+++++.+...+.. +..+++|+.|+|+++......+. +.
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~-----~~~l~~Lk~L~Ls~~~~l~~ip~-ls-------- 654 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDG-----VHSLTGLRNIDLRGSKNLKEIPD-LS-------- 654 (1153)
T ss_pred ccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccc-----cccCCCCCEEECCCCCCcCcCCc-cc--------
Confidence 3445555443222223222 456777888877755433322 35677788888877654333222 11
Q ss_pred cCCceeEEEecCCCCccCCcchHHHHHHHHhhcCCCccEEEcCCCCCChhHHHHHHHHHHhcCCCcCEEEccCCCCCCcc
Q 007479 255 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 334 (602)
Q Consensus 255 ~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~ 334 (602)
.+++|++|++.+|.... . ++..+.++++|+.|++++|......|..+ .+.+|++|++++|.....+
T Consensus 655 ~l~~Le~L~L~~c~~L~----~----lp~si~~L~~L~~L~L~~c~~L~~Lp~~i------~l~sL~~L~Lsgc~~L~~~ 720 (1153)
T PLN03210 655 MATNLETLKLSDCSSLV----E----LPSSIQYLNKLEDLDMSRCENLEILPTGI------NLKSLYRLNLSGCSRLKSF 720 (1153)
T ss_pred cCCcccEEEecCCCCcc----c----cchhhhccCCCCEEeCCCCCCcCccCCcC------CCCCCCEEeCCCCCCcccc
Confidence 15678888887775332 2 44446777778888887765433444322 3567777777777544333
Q ss_pred cccCCCChhhhhhcCCCCCCccEEEecCCCCC
Q 007479 335 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLC 366 (602)
Q Consensus 335 ~~~~~~~l~~~l~~l~~l~~L~~L~L~~n~l~ 366 (602)
|. ...+|++|++++|.+.
T Consensus 721 p~--------------~~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 721 PD--------------ISTNISWLDLDETAIE 738 (1153)
T ss_pred cc--------------ccCCcCeeecCCCccc
Confidence 31 1235666666666554
No 22
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.55 E-value=7e-15 Score=153.18 Aligned_cols=359 Identities=24% Similarity=0.260 Sum_probs=282.5
Q ss_pred hhhccCCccEEEeccccchHH-HHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHhhcccccCCceeEEEecCCCCc
Q 007479 192 QLLRESKLQSLVLRWIRFEEH-VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFI 270 (602)
Q Consensus 192 ~l~~~~~L~~L~Ls~~~~~~~-~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~L~~~~~~~~~L~~L~l~~~~l~ 270 (602)
.+.....|+.|+++.|.+... ...+.......-..|+.|++..|.++..+...+...|.. +..++.++++.|.+.
T Consensus 110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~----~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEK----NEHLTELDLSLNGLI 185 (478)
T ss_pred HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhc----ccchhHHHHHhcccc
Confidence 355678899999999876543 333333323222578889999999999999999988876 578999999999998
Q ss_pred cCCcchHHHHHHHHhhcCCCccEEEcCCCCCChhHHHHHHHHHHhcCCCcCEEEccCCCCCCcccccCCCChhhhhhcCC
Q 007479 271 ENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGK 350 (602)
Q Consensus 271 ~~~~~~l~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~~l~~l~ 350 (602)
..+...+++.+...+....+++.|++++|.++...+..+...+...-..+..|++..|.+.+.+. ....+.++
T Consensus 186 ~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~-------~~L~~~l~ 258 (478)
T KOG4308|consen 186 ELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGV-------EKLLPCLS 258 (478)
T ss_pred hhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHH-------HHHHHHhc
Confidence 76666666666555556889999999999999988888877766554447889999999987322 22334444
Q ss_pred CC-CCccEEEecCCCCChhhHHHHHHHhccCCCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCCCChHH
Q 007479 351 SL-QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG 429 (602)
Q Consensus 351 ~l-~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~ 429 (602)
.. ..++++++..|.|+..+...++..+...+.++.+.++.|.+.+.++..++ ..+.....+.++.+.++.....+
T Consensus 259 ~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~----~~l~~~~~~~~~~l~~~~~~~~~ 334 (478)
T KOG4308|consen 259 VLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLL----EALERKTPLLHLVLGGTGKGTRG 334 (478)
T ss_pred ccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHH----HHhhhcccchhhhccccCccchh
Confidence 55 78899999999999999999999999999999999999999999999887 45556678888888877665554
Q ss_pred HHHHHHHHhcCCCCCcEEEccCCCCChHHHHHHHHHhc---CCccEEEeeccCCChhHHHHHHHHhhcCCCccEEeCcCC
Q 007479 430 VSQLLDTLSTLRRPPTSLSIADNNLGSHIAASLGKFFG---TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKN 506 (602)
Q Consensus 430 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~---~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N 506 (602)
...+....-.....+.....+++...+.....+..... ..+..+++..+.+...+...++..+..+..++.++++.|
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n 414 (478)
T KOG4308|consen 335 GTSVLAEADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLN 414 (478)
T ss_pred HHHHHHHHHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcC
Confidence 44333333333334666777778888777766655432 347888888888888888899999999999999999999
Q ss_pred CCChHHHHHHHHhCccCCCccEEEccCCCCCHHHHHHHHHHHhhcCCCccEEEecCCCCC
Q 007479 507 RGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWE 566 (602)
Q Consensus 507 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~N~l~ 566 (602)
...+.++..+......+..++.++++.|.++..+.....+....+. ......+.+|.++
T Consensus 415 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 473 (478)
T KOG4308|consen 415 SLHDEGAEVLTEQLSRNGSLKALRLSRNPITALGTEELQRALALNP-GILAIRLRGNVIG 473 (478)
T ss_pred ccchhhHHHHHHhhhhcccchhhhhccChhhhcchHHHHHHHhcCC-CcceeecccCccc
Confidence 9999998888888777779999999999999999999999888776 7888888888775
No 23
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.54 E-value=7.2e-15 Score=171.95 Aligned_cols=288 Identities=19% Similarity=0.182 Sum_probs=168.6
Q ss_pred chhhhcccccchHHhhHhhhccCCccEEEeccccchHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHhhcccc
Q 007479 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 254 (602)
Q Consensus 175 ~l~~L~l~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~L~~~~~ 254 (602)
+++.|++.+......+..+..+++|+.|+|+++.....++. +..+++|+.|+|++|......+..+..
T Consensus 612 ~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~------- 679 (1153)
T PLN03210 612 NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQY------- 679 (1153)
T ss_pred CCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhc-------
Confidence 56666666543333344456789999999998753333332 467889999999999876666655543
Q ss_pred cCCceeEEEecCCCCccCCcchHHHHHHHHhhcCCCccEEEcCCCCCChhHHHHHHHHHHhcCCCcCEEEccCCCCCCcc
Q 007479 255 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 334 (602)
Q Consensus 255 ~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~ 334 (602)
+++|+.|++++|...+ .+|.. + ++++|+.|++++|......|. ...+|++|++++|.+.. +
T Consensus 680 -L~~L~~L~L~~c~~L~----~Lp~~----i-~l~sL~~L~Lsgc~~L~~~p~--------~~~nL~~L~L~~n~i~~-l 740 (1153)
T PLN03210 680 -LNKLEDLDMSRCENLE----ILPTG----I-NLKSLYRLNLSGCSRLKSFPD--------ISTNISWLDLDETAIEE-F 740 (1153)
T ss_pred -cCCCCEEeCCCCCCcC----ccCCc----C-CCCCCCEEeCCCCCCcccccc--------ccCCcCeeecCCCcccc-c
Confidence 7889999999885433 33322 2 678999999999876544443 24789999999998753 3
Q ss_pred cccCCCChhhhhhcCCCCCCccEEEecCCCCChh--hHHHH-HHHhccCCCccEEEecCCCCChhhHHhHHHHHHHhhcC
Q 007479 335 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKA--DARDL-GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASER 411 (602)
Q Consensus 335 ~~~~~~~l~~~l~~l~~l~~L~~L~L~~n~l~~~--~~~~l-~~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~ 411 (602)
| .. .++++|++|++.++....- .+..+ +......++|+.|++++|..... +| ..++.
T Consensus 741 P--------~~----~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~-----lP---~si~~ 800 (1153)
T PLN03210 741 P--------SN----LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE-----LP---SSIQN 800 (1153)
T ss_pred c--------cc----ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccc-----cC---hhhhC
Confidence 3 11 1345666666655321110 00001 11112235677777777654333 44 44566
Q ss_pred CCCccEEEcccCC-CChHHHHHHHHHHhcCCCCCcEEEccCCCCChHHHHHHHHHhcCCccEEEeeccCCChhHHHHHHH
Q 007479 412 CNPLVELYLENCE-LSGRGVSQLLDTLSTLRRPPTSLSIADNNLGSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQD 490 (602)
Q Consensus 412 ~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~L~~L~L~~n~l~~~~~~~l~~ 490 (602)
+++|+.|++++|. +.. ++..+ .+. +|+.|++++|..-...+.. ..+|++|+|++|.++ .++.
T Consensus 801 L~~L~~L~Ls~C~~L~~-----LP~~~-~L~-sL~~L~Ls~c~~L~~~p~~-----~~nL~~L~Ls~n~i~-----~iP~ 863 (1153)
T PLN03210 801 LHKLEHLEIENCINLET-----LPTGI-NLE-SLESLDLSGCSRLRTFPDI-----STNISDLNLSRTGIE-----EVPW 863 (1153)
T ss_pred CCCCCEEECCCCCCcCe-----eCCCC-Ccc-ccCEEECCCCCcccccccc-----ccccCEeECCCCCCc-----cChH
Confidence 6777777777664 332 33222 222 4777777766432222221 156777777777664 2344
Q ss_pred HhhcCCCccEEeCcCCC-CChHHHHHHHHhCccCCCccEEEccCCC
Q 007479 491 GVTKELKLVNINISKNR-GGVETAKFLSKLMPLAPELVEVNAGYNL 535 (602)
Q Consensus 491 ~l~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 535 (602)
.+..+++|+.|+|++|+ +.. ++..+..+++|+.+++++|.
T Consensus 864 si~~l~~L~~L~L~~C~~L~~-----l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 864 WIEKFSNLSFLDMNGCNNLQR-----VSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred HHhcCCCCCEEECCCCCCcCc-----cCcccccccCCCeeecCCCc
Confidence 55566677777777654 321 22223456666666666664
No 24
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.50 E-value=8.2e-13 Score=121.49 Aligned_cols=251 Identities=20% Similarity=0.181 Sum_probs=162.6
Q ss_pred hHHHHHHHHHHhcCCCcCEEEccCCCCCCcccccCCCChhhhhhcCCCCCCccEEEecCCCCCh------hhHHHHHHHh
Q 007479 304 DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCK------ADARDLGSAL 377 (602)
Q Consensus 304 ~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~~l~~l~~l~~L~~L~L~~n~l~~------~~~~~l~~~l 377 (602)
...+.....+.. +..+..++||+|.|..... ..++..+ .+-.+|+..+++.-..+. ..+..+.+.+
T Consensus 17 eDvk~v~eel~~-~d~~~evdLSGNtigtEA~----e~l~~~i---a~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aL 88 (388)
T COG5238 17 EDVKGVVEELEM-MDELVEVDLSGNTIGTEAM----EELCNVI---ANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKAL 88 (388)
T ss_pred chhhHHHHHHHh-hcceeEEeccCCcccHHHH----HHHHHHH---hhhcceeEeehhhhhhcccHHHHHHHHHHHHHHH
Confidence 334444444333 6788888888888876322 1122222 245677788777754432 2334456667
Q ss_pred ccCCCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCCCChHHHHHHHHHHhcC--------CCCCcEEEc
Q 007479 378 VHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTL--------RRPPTSLSI 449 (602)
Q Consensus 378 ~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~--------~~~L~~L~L 449 (602)
..+|+|+.++||+|.++.+...-+. ..+..-+.|.+|.+++|.++..+...+..++..+ ...|++...
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~----d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELG----DLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred hcCCcceeeeccccccCcccchHHH----HHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 7788888888888888766444444 3344447788888888888776665555444322 124888888
Q ss_pred cCCCCChHHHHHHHHHhc--CCccEEEeeccCCChhHHHHHH-HHhhcCCCccEEeCcCCCCChHHHHHHHHhCccCCCc
Q 007479 450 ADNNLGSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQ-DGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPEL 526 (602)
Q Consensus 450 s~n~l~~~~~~~l~~~l~--~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~L 526 (602)
+.|++..-.....+..+. .+|+++.+..|+|...|+..+. ..+..+.+|+.|||..|.++..|...++.++..-+.|
T Consensus 165 grNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 165 GRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred ccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 888875333333333332 4688888888888888776553 3344566788888888888888888888877777778
Q ss_pred cEEEccCCCCCHHHHHHHHHHHhhc-CCCccEEEecCCCCC
Q 007479 527 VEVNAGYNLMPLESLTIICSALKVA-KGHLQRLDLTGNNWE 566 (602)
Q Consensus 527 ~~L~Ls~n~l~~~~~~~l~~~l~~~-~~~L~~L~L~~N~l~ 566 (602)
+.|.+.+|-++..|...+...+... .++|..|-...|-+.
T Consensus 245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 8888888888888877776665432 347778877777653
No 25
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=5.3e-13 Score=124.33 Aligned_cols=197 Identities=21% Similarity=0.194 Sum_probs=146.7
Q ss_pred CCcCEEEccCCCCCCcccccCCCChhhhhhcCCCCCCccEEEecCCCCChhhHHHHHHHhccCCCccEEEecCC-CCChh
Q 007479 318 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN-TIEDD 396 (602)
Q Consensus 318 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~L~~L~Ls~n-~l~~~ 396 (602)
+.|++|||++..|+. + .....++.|++|+.|.+.++++.+ .+...++.+.+|+.|+++.+ +++..
T Consensus 185 sRlq~lDLS~s~it~-------s---tl~~iLs~C~kLk~lSlEg~~LdD----~I~~~iAkN~~L~~lnlsm~sG~t~n 250 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITV-------S---TLHGILSQCSKLKNLSLEGLRLDD----PIVNTIAKNSNLVRLNLSMCSGFTEN 250 (419)
T ss_pred hhhHHhhcchhheeH-------H---HHHHHHHHHHhhhhccccccccCc----HHHHHHhccccceeeccccccccchh
Confidence 579999999998875 2 333445689999999999999999 46677888999999999996 78888
Q ss_pred hHHhHHHHHHHhhcCCCCccEEEcccCCCChHHHHHHHHHHhcCCCCCcEEEccCCC--CChHHHHHHHHHhcCCccEEE
Q 007479 397 GIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN--LGSHIAASLGKFFGTSVQVLN 474 (602)
Q Consensus 397 g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~l~~~L~~L~ 474 (602)
|++.++ ..|+.|.+|+++.|.++...+..+...++. +|+.|+++++. +.+...+.+..- +++|.+||
T Consensus 251 ~~~ll~-------~scs~L~~LNlsWc~l~~~~Vtv~V~hise---~l~~LNlsG~rrnl~~sh~~tL~~r-cp~l~~LD 319 (419)
T KOG2120|consen 251 ALQLLL-------SSCSRLDELNLSWCFLFTEKVTVAVAHISE---TLTQLNLSGYRRNLQKSHLSTLVRR-CPNLVHLD 319 (419)
T ss_pred HHHHHH-------HhhhhHhhcCchHhhccchhhhHHHhhhch---hhhhhhhhhhHhhhhhhHHHHHHHh-CCceeeec
Confidence 877664 456899999999999988777666666665 69999999973 555555555443 38899999
Q ss_pred eeccC-CChhHHHHHHHHhhcCCCccEEeCcCCCCChHHHHHHHHhCccCCCccEEEccCCCCCHHHHHHHHHH
Q 007479 475 IGAIG-LGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 547 (602)
Q Consensus 475 L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 547 (602)
|++|. +++.. ...+-+.+.|++|.++.|..-++. .+. .+...|+|.+|++-++- ++..++.+.+.
T Consensus 320 LSD~v~l~~~~----~~~~~kf~~L~~lSlsRCY~i~p~--~~~-~l~s~psl~yLdv~g~v-sdt~mel~~e~ 385 (419)
T KOG2120|consen 320 LSDSVMLKNDC----FQEFFKFNYLQHLSLSRCYDIIPE--TLL-ELNSKPSLVYLDVFGCV-SDTTMELLKEM 385 (419)
T ss_pred cccccccCchH----HHHHHhcchheeeehhhhcCCChH--Hee-eeccCcceEEEEecccc-CchHHHHHHHh
Confidence 99984 56533 334446778999999999833222 122 24668889999988774 45555555554
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.28 E-value=1.8e-11 Score=119.46 Aligned_cols=269 Identities=18% Similarity=0.176 Sum_probs=182.7
Q ss_pred hcCCCccEEEcCCC-CCChhHHHHHHHHHHhcCCCcCEEEccCCC-CCCcccccCCCChhhhhhcCCCCCCccEEEecCC
Q 007479 286 SSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNS-IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN 363 (602)
Q Consensus 286 ~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~l~~~l~~l~~l~~L~~L~L~~n 363 (602)
..++.|++|+|..| .+++...+.+ ...+++|++|+++.|. |++.+ +... ...+..++.+.+.||
T Consensus 187 ~~C~~l~~l~L~~c~~iT~~~Lk~l----a~gC~kL~~lNlSwc~qi~~~g-------v~~~---~rG~~~l~~~~~kGC 252 (483)
T KOG4341|consen 187 RYCRKLRHLNLHSCSSITDVSLKYL----AEGCRKLKYLNLSWCPQISGNG-------VQAL---QRGCKELEKLSLKGC 252 (483)
T ss_pred HhcchhhhhhhcccchhHHHHHHHH----HHhhhhHHHhhhccCchhhcCc-------chHH---hccchhhhhhhhccc
Confidence 45677777777773 5555555544 3457888888888875 44311 1111 224556777766665
Q ss_pred -CCChhhHHHHHHHhccCCCccEEEecCC-CCChhhHHhHHHHHHHhhcCCCCccEEEcccCC-CChHHHHHHHHHHhcC
Q 007479 364 -NLCKADARDLGSALVHIPNLEILDISDN-TIEDDGIRSLIPYFVQASERCNPLVELYLENCE-LSGRGVSQLLDTLSTL 440 (602)
Q Consensus 364 -~l~~~~~~~l~~~l~~l~~L~~L~Ls~n-~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~ 440 (602)
.+..+ .+...-+....+..+++..| .++|+++..+. ..+..|+.|+.+++. +++. ...+++..
T Consensus 253 ~e~~le---~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~-------~~c~~lq~l~~s~~t~~~d~----~l~aLg~~ 318 (483)
T KOG4341|consen 253 LELELE---ALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA-------CGCHALQVLCYSSCTDITDE----VLWALGQH 318 (483)
T ss_pred ccccHH---HHHHHhccChHhhccchhhhccccchHHHHHh-------hhhhHhhhhcccCCCCCchH----HHHHHhcC
Confidence 33333 34444455666777777665 78888765543 345788999998875 4443 45566665
Q ss_pred CCCCcEEEccCCC-CChHHHHHHHHHhcCCccEEEeeccCCChhHHHHHHHHhhcCCCccEEeCcCCC-CChHHHHHHHH
Q 007479 441 RRPPTSLSIADNN-LGSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNR-GGVETAKFLSK 518 (602)
Q Consensus 441 ~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-l~~~~~~~l~~ 518 (602)
..+|+.|-++.++ +++.+...++.. +..|+.+++..+...-.+ .+...-.+++.|+.|.|++|. ++|.|...+..
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn-~~~Le~l~~e~~~~~~d~--tL~sls~~C~~lr~lslshce~itD~gi~~l~~ 395 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRN-CPHLERLDLEECGLITDG--TLASLSRNCPRLRVLSLSHCELITDEGIRHLSS 395 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcC-Chhhhhhcccccceehhh--hHhhhccCCchhccCChhhhhhhhhhhhhhhhh
Confidence 6679999999985 788888888765 278999999999875544 345555667889999999998 89999888887
Q ss_pred hCccCCCccEEEccCCC-CCHHHHHHHHHHHhhcCCCccEEEecCCCCCCChhHHHHHHHHHHcCCCeEEeCCCCCCC
Q 007479 519 LMPLAPELVEVNAGYNL-MPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNGLPILILPTLQALD 595 (602)
Q Consensus 519 ~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~N~l~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~ 595 (602)
.-.....|..+.++++. +++...+.+... ++|+++++-++.-- ..+++..+.. ..|.+.+.....+.
T Consensus 396 ~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c-----~~Leri~l~~~q~v-tk~~i~~~~~----~lp~i~v~a~~a~~ 463 (483)
T KOG4341|consen 396 SSCSLEGLEVLELDNCPLITDATLEHLSIC-----RNLERIELIDCQDV-TKEAISRFAT----HLPNIKVHAYFAPV 463 (483)
T ss_pred ccccccccceeeecCCCCchHHHHHHHhhC-----cccceeeeechhhh-hhhhhHHHHh----hCccceehhhccCC
Confidence 77778899999999998 445555555442 59999999888642 3444444433 46888776555444
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.27 E-value=1.9e-13 Score=132.04 Aligned_cols=292 Identities=16% Similarity=0.104 Sum_probs=155.6
Q ss_pred CCccEEEeccccchHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHhhcccccCCceeEEEec-CCCCccCCcc
Q 007479 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSID-ISSFIENCPS 275 (602)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~L~~~~~~~~~L~~L~l~-~~~l~~~~~~ 275 (602)
..-.++.|..|.+....++. |+.+++|+.|+|++|.|+...+.++.+ +.++-+|.+- +|.|++
T Consensus 67 ~~tveirLdqN~I~~iP~~a----F~~l~~LRrLdLS~N~Is~I~p~AF~G--------L~~l~~Lvlyg~NkI~~---- 130 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGA----FKTLHRLRRLDLSKNNISFIAPDAFKG--------LASLLSLVLYGNNKITD---- 130 (498)
T ss_pred CcceEEEeccCCcccCChhh----ccchhhhceecccccchhhcChHhhhh--------hHhhhHHHhhcCCchhh----
Confidence 34567888888665544444 788999999999999999988888765 4445555554 477875
Q ss_pred hHHHHHHHHhhcCCCccEEEcCCCCCChhHHHHHHHHHHhcCCCcCEEEccCCCCCCcccccCCCChhhhhhcCCCCCCc
Q 007479 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (602)
Q Consensus 276 ~l~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~~l~~l~~l~~L 355 (602)
++.. ++..+..|+.|.+..|.+.-...+.+ ..++++..|.+-+|.+.. ..=+.+..+..+
T Consensus 131 -l~k~---~F~gL~slqrLllNan~i~Cir~~al-----~dL~~l~lLslyDn~~q~-----------i~~~tf~~l~~i 190 (498)
T KOG4237|consen 131 -LPKG---AFGGLSSLQRLLLNANHINCIRQDAL-----RDLPSLSLLSLYDNKIQS-----------ICKGTFQGLAAI 190 (498)
T ss_pred -hhhh---HhhhHHHHHHHhcChhhhcchhHHHH-----HHhhhcchhcccchhhhh-----------hccccccchhcc
Confidence 4443 35666888888888888875444443 335788888888887653 111234456677
Q ss_pred cEEEecCCCCChhhHHHHHHHhccCCCccEEEecCCCCChhhHHhHHHHHHHhhc--------CCCCccEE---EcccCC
Q 007479 356 RLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASE--------RCNPLVEL---YLENCE 424 (602)
Q Consensus 356 ~~L~L~~n~l~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~--------~~~~L~~L---~L~~n~ 424 (602)
+++.+..|.+-. ..+++.+.. ++..+.+...|.+...|+....-. ..+.++.+ -.+.+.
T Consensus 191 ~tlhlA~np~ic---------dCnL~wla~-~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~ 260 (498)
T KOG4237|consen 191 KTLHLAQNPFIC---------DCNLPWLAD-DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDF 260 (498)
T ss_pred chHhhhcCcccc---------ccccchhhh-HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccC
Confidence 888877776322 011111111 123333333343333332111000 00111111 111221
Q ss_pred CChHHHHHHHHHHhcCCCCCcEEEccCCCCChHHHHHHHHHhcCCccEEEeeccCCChhHHHHHHHHhhcCCCccEEeCc
Q 007479 425 LSGRGVSQLLDTLSTLRRPPTSLSIADNNLGSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIS 504 (602)
Q Consensus 425 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 504 (602)
+..... ...+..+. +|+.|++++|++++....++.+. ..+++|.|..|.|.... .+.+..+..|+.|+|.
T Consensus 261 ~d~~cP---~~cf~~L~-~L~~lnlsnN~i~~i~~~aFe~~--a~l~eL~L~~N~l~~v~----~~~f~~ls~L~tL~L~ 330 (498)
T KOG4237|consen 261 PDSICP---AKCFKKLP-NLRKLNLSNNKITRIEDGAFEGA--AELQELYLTRNKLEFVS----SGMFQGLSGLKTLSLY 330 (498)
T ss_pred cCCcCh---HHHHhhcc-cceEeccCCCccchhhhhhhcch--hhhhhhhcCcchHHHHH----HHhhhccccceeeeec
Confidence 222111 11244444 36666666666665555566555 66666666666653222 2334445556666666
Q ss_pred CCCCChHHHHHHHHhCccCCCccEEEccCCCCC-HHHHHHHHHHH
Q 007479 505 KNRGGVETAKFLSKLMPLAPELVEVNAGYNLMP-LESLTIICSAL 548 (602)
Q Consensus 505 ~N~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l 548 (602)
+|+|+.... .++....+|.+|++-.|.+. +--+.++.+++
T Consensus 331 ~N~it~~~~----~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wl 371 (498)
T KOG4237|consen 331 DNQITTVAP----GAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWL 371 (498)
T ss_pred CCeeEEEec----ccccccceeeeeehccCcccCccchHHHHHHH
Confidence 666553332 22333555555555555432 22234444443
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.26 E-value=5.3e-13 Score=128.98 Aligned_cols=321 Identities=13% Similarity=0.068 Sum_probs=188.1
Q ss_pred chhhhcccccchHHhhH-hhhccCCccEEEeccccchHHHHHHHHHHHhcCCCccEEEccC-CCCChhHHHHHHHHhhcc
Q 007479 175 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLH-CKLSPSFVEGICRSLCSK 252 (602)
Q Consensus 175 ~l~~L~l~~~~~~~~~~-~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~~~~~l~~~L~~~ 252 (602)
....|++.+......+. .|..+.+|+.|+||+|.++...+ ..|..+..|..|-+.+ |+|.+ .++..++.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p----~AF~GL~~l~~Lvlyg~NkI~~-l~k~~F~g---- 138 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAP----DAFKGLASLLSLVLYGNNKITD-LPKGAFGG---- 138 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcCh----HhhhhhHhhhHHHhhcCCchhh-hhhhHhhh----
Confidence 34455555543333333 47778999999999985554444 4477777887777777 66666 44444444
Q ss_pred cccCCceeEEEecCCCCccCCcchHHHHHHHHhhcCCCccEEEcCCCCCChhHHHHHHHHHHhcCCCcCEEEccCCCCCC
Q 007479 253 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (602)
Q Consensus 253 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~ 332 (602)
+..++.|.+.-|++.- ....++..+++|..|.+.+|.+.. ++...+..+..++++.+..|.+..
T Consensus 139 ---L~slqrLllNan~i~C--------ir~~al~dL~~l~lLslyDn~~q~-----i~~~tf~~l~~i~tlhlA~np~ic 202 (498)
T KOG4237|consen 139 ---LSSLQRLLLNANHINC--------IRQDALRDLPSLSLLSLYDNKIQS-----ICKGTFQGLAAIKTLHLAQNPFIC 202 (498)
T ss_pred ---HHHHHHHhcChhhhcc--------hhHHHHHHhhhcchhcccchhhhh-----hccccccchhccchHhhhcCcccc
Confidence 4447888888777664 234456777888888888887752 333234556788888888887432
Q ss_pred c--ccccCCCChhhhhhcCCCCCCccEEEecCCCCChhhHHHHHHHhccCCCccEEEecCCCCChhhHHhHHHHHHHhhc
Q 007479 333 W--LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASE 410 (602)
Q Consensus 333 ~--~~~~~~~~l~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~ 410 (602)
. +|-. ...........+.........+.+.++.....+.....+..++ ..+....+.... +|. ..++
T Consensus 203 dCnL~wl-a~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~--s~~~~~d~~d~~------cP~--~cf~ 271 (498)
T KOG4237|consen 203 DCNLPWL-ADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLP--SRLSSEDFPDSI------CPA--KCFK 271 (498)
T ss_pred ccccchh-hhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHH--HhhccccCcCCc------ChH--HHHh
Confidence 1 0000 0000000111222333333344444444433333322222211 112222222222 554 4578
Q ss_pred CCCCccEEEcccCCCChHHHHHHHHHHhcCCCCCcEEEccCCCCChHHHHHHHHHhcCCccEEEeeccCCChhHHHHHHH
Q 007479 411 RCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQD 490 (602)
Q Consensus 411 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~L~~L~L~~n~l~~~~~~~l~~ 490 (602)
.+++|+.|+|++|+++.. -..++.... .+++|.|..|++.......+..+ +.|+.|+|.+|+||-.. ++
T Consensus 272 ~L~~L~~lnlsnN~i~~i----~~~aFe~~a-~l~eL~L~~N~l~~v~~~~f~~l--s~L~tL~L~~N~it~~~----~~ 340 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNKITRI----EDGAFEGAA-ELQELYLTRNKLEFVSSGMFQGL--SGLKTLSLYDNQITTVA----PG 340 (498)
T ss_pred hcccceEeccCCCccchh----hhhhhcchh-hhhhhhcCcchHHHHHHHhhhcc--ccceeeeecCCeeEEEe----cc
Confidence 889999999999999885 334455544 39999999999875555566666 88999999999987554 56
Q ss_pred HhhcCCCccEEeCcCCCCC-hHHHHHHHHhCc-----------cCCCccEEEccCCCCCHHHHH
Q 007479 491 GVTKELKLVNINISKNRGG-VETAKFLSKLMP-----------LAPELVEVNAGYNLMPLESLT 542 (602)
Q Consensus 491 ~l~~~~~L~~L~Ls~N~l~-~~~~~~l~~~l~-----------~~~~L~~L~Ls~n~l~~~~~~ 542 (602)
++.....|.+|+|-.|.+. +--...+.+.+. +.-.++.+.++.+.+++....
T Consensus 341 aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~ 404 (498)
T KOG4237|consen 341 AFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCG 404 (498)
T ss_pred cccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccC
Confidence 6677778999999877632 111123332221 112466777777777665554
No 29
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.25 E-value=2.5e-14 Score=122.56 Aligned_cols=155 Identities=22% Similarity=0.280 Sum_probs=90.3
Q ss_pred CCCCccEEEecCCCCChhhHHHHHHHhccCCCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCCCChHHH
Q 007479 351 SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGV 430 (602)
Q Consensus 351 ~l~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~~ 430 (602)
.++.++.|.+++|.++. +|..++.+.+|+.|++++|.|++ +| ..+..+++|+.|+++-|.+..
T Consensus 31 ~~s~ITrLtLSHNKl~~-----vppnia~l~nlevln~~nnqie~------lp---~~issl~klr~lnvgmnrl~~--- 93 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTV-----VPPNIAELKNLEVLNLSNNQIEE------LP---TSISSLPKLRILNVGMNRLNI--- 93 (264)
T ss_pred chhhhhhhhcccCceee-----cCCcHHHhhhhhhhhcccchhhh------cC---hhhhhchhhhheecchhhhhc---
Confidence 44555556666666655 55555566666666666666655 44 444555666666666665554
Q ss_pred HHHHHHHhcCCCCCcEEEccCCCCChH-HHHHHHHHhcCCccEEEeeccCCChhHHHHHHHHhhcCCCccEEeCcCCCCC
Q 007479 431 SQLLDTLSTLRRPPTSLSIADNNLGSH-IAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGG 509 (602)
Q Consensus 431 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~ 509 (602)
++..++.++. |+.||+..|.+... .|..+..+ +.|+.|++++|.+ +.++..+.++++|+.|.+..|.+
T Consensus 94 --lprgfgs~p~-levldltynnl~e~~lpgnff~m--~tlralyl~dndf-----e~lp~dvg~lt~lqil~lrdndl- 162 (264)
T KOG0617|consen 94 --LPRGFGSFPA-LEVLDLTYNNLNENSLPGNFFYM--TTLRALYLGDNDF-----EILPPDVGKLTNLQILSLRDNDL- 162 (264)
T ss_pred --CccccCCCch-hhhhhccccccccccCCcchhHH--HHHHHHHhcCCCc-----ccCChhhhhhcceeEEeeccCch-
Confidence 4555555553 66666666665432 34445555 5666666666665 55556666666666666666663
Q ss_pred hHHHHHHHHhCccCCCccEEEccCCCCC
Q 007479 510 VETAKFLSKLMPLAPELVEVNAGYNLMP 537 (602)
Q Consensus 510 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 537 (602)
-.++..++.++.|++|++.+|+++
T Consensus 163 ----l~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 163 ----LSLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ----hhCcHHHHHHHHHHHHhcccceee
Confidence 223334445666677777777644
No 30
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=3.3e-11 Score=112.55 Aligned_cols=244 Identities=17% Similarity=0.156 Sum_probs=172.5
Q ss_pred CCccEEEcCCCCCChhHHHHHHHHHHhcCCCcCEEEccCCCCCCcccccCCCChhhhhhcCCCCCCccEEEecCCCCChh
Q 007479 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKA 368 (602)
Q Consensus 289 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~~l~~l~~l~~L~~L~L~~n~l~~~ 368 (602)
..-+.+|+.+-.+.......+. ......+.+..-.+.+. .+...... .-+.|+++||++..|+..
T Consensus 136 ~lW~~lDl~~r~i~p~~l~~l~------~rgV~v~Rlar~~~~~p-------rlae~~~~--frsRlq~lDLS~s~it~s 200 (419)
T KOG2120|consen 136 SLWQTLDLTGRNIHPDVLGRLL------SRGVIVFRLARSFMDQP-------RLAEHFSP--FRSRLQHLDLSNSVITVS 200 (419)
T ss_pred cceeeeccCCCccChhHHHHHH------hCCeEEEEcchhhhcCc-------hhhhhhhh--hhhhhHHhhcchhheeHH
Confidence 4567888888888755544442 25667777776655542 11122111 124699999999999987
Q ss_pred hHHHHHHHhccCCCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCC-CChHHHHHHHHHHhcCCCCCcEE
Q 007479 369 DARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE-LSGRGVSQLLDTLSTLRRPPTSL 447 (602)
Q Consensus 369 ~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~~L~~L 447 (602)
.+.. .+..+.+|+.|.+.++.+.|. +- ..+..+..|+.|+++.|. ++..++..+...... |.+|
T Consensus 201 tl~~---iLs~C~kLk~lSlEg~~LdD~-----I~---~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~----L~~L 265 (419)
T KOG2120|consen 201 TLHG---ILSQCSKLKNLSLEGLRLDDP-----IV---NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR----LDEL 265 (419)
T ss_pred HHHH---HHHHHHhhhhccccccccCcH-----HH---HHHhccccceeeccccccccchhHHHHHHHhhhh----Hhhc
Confidence 5444 467788999999999999986 22 456677999999999885 888877777666654 9999
Q ss_pred EccCCCCChHHHHHHHHHhcCCccEEEeeccC--CChhHHHHHHHHhhcCCCccEEeCcCCC-CChHHHHHHHHhCccCC
Q 007479 448 SIADNNLGSHIAASLGKFFGTSVQVLNIGAIG--LGSSGFRVLQDGVTKELKLVNINISKNR-GGVETAKFLSKLMPLAP 524 (602)
Q Consensus 448 ~Ls~n~l~~~~~~~l~~~l~~~L~~L~L~~n~--l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~ 524 (602)
+++.|.+..+....+...+..+|+.|+|+|+. +....+..+. .++++|.+||||.|. +++.-. ..+-+.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~---~rcp~l~~LDLSD~v~l~~~~~----~~~~kf~ 338 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLV---RRCPNLVHLDLSDSVMLKNDCF----QEFFKFN 338 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHH---HhCCceeeeccccccccCchHH----HHHHhcc
Confidence 99999987666666655556889999999983 4444444443 568899999999988 665333 3345699
Q ss_pred CccEEEccCCC-CCHHHHHHHHHHHhhcCCCccEEEecCCCCCCChhHHHHHHH
Q 007479 525 ELVEVNAGYNL-MPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSE 577 (602)
Q Consensus 525 ~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~N~l~~~~~~~~~L~~ 577 (602)
.|++|.++.|. |.+..+-.+... +.|.+||+.|+- .+..+..+.+
T Consensus 339 ~L~~lSlsRCY~i~p~~~~~l~s~-----psl~yLdv~g~v---sdt~mel~~e 384 (419)
T KOG2120|consen 339 YLQHLSLSRCYDIIPETLLELNSK-----PSLVYLDVFGCV---SDTTMELLKE 384 (419)
T ss_pred hheeeehhhhcCCChHHeeeeccC-----cceEEEEecccc---CchHHHHHHH
Confidence 99999999998 555544444443 799999998884 2445554444
No 31
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.15 E-value=3.7e-13 Score=115.38 Aligned_cols=155 Identities=28% Similarity=0.372 Sum_probs=83.4
Q ss_pred cCCCccEEEcCCCCCChhHHHHHHHHHHhcCCCcCEEEccCCCCCCcccccCCCChhhhhhcCCCCCCccEEEecCCCCC
Q 007479 287 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLC 366 (602)
Q Consensus 287 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~~l~~l~~l~~L~~L~L~~n~l~ 366 (602)
++.+++.|-||+|+++ ..|..+.. +.+|+.|++++|.|.+ +| ..++++++|++|++.-|.+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~-----l~nlevln~~nnqie~-lp-----------~~issl~klr~lnvgmnrl~ 92 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAE-----LKNLEVLNLSNNQIEE-LP-----------TSISSLPKLRILNVGMNRLN 92 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHH-----hhhhhhhhcccchhhh-cC-----------hhhhhchhhhheecchhhhh
Confidence 3455566666666665 55555433 3566666666666643 12 23335566666666666655
Q ss_pred hhhHHHHHHHhccCCCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCCCChHHHHHHHHHHhcCCCCCcE
Q 007479 367 KADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTS 446 (602)
Q Consensus 367 ~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~ 446 (602)
. +|.+++.++.|++||+++|++.... +| ..+..+..|+.|+|+.|.+.- ++..++++. +|+.
T Consensus 93 ~-----lprgfgs~p~levldltynnl~e~~----lp---gnff~m~tlralyl~dndfe~-----lp~dvg~lt-~lqi 154 (264)
T KOG0617|consen 93 I-----LPRGFGSFPALEVLDLTYNNLNENS----LP---GNFFYMTTLRALYLGDNDFEI-----LPPDVGKLT-NLQI 154 (264)
T ss_pred c-----CccccCCCchhhhhhcccccccccc----CC---cchhHHHHHHHHHhcCCCccc-----CChhhhhhc-ceeE
Confidence 4 6666666666666666666665421 23 223333455555555555544 444444444 2555
Q ss_pred EEccCCCCChHHHHHHHHHhcCCccEEEeeccCC
Q 007479 447 LSIADNNLGSHIAASLGKFFGTSVQVLNIGAIGL 480 (602)
Q Consensus 447 L~Ls~n~l~~~~~~~l~~~l~~~L~~L~L~~n~l 480 (602)
|.+..|.+- ..|..++.+ +.|++|.+.+|.+
T Consensus 155 l~lrdndll-~lpkeig~l--t~lrelhiqgnrl 185 (264)
T KOG0617|consen 155 LSLRDNDLL-SLPKEIGDL--TRLRELHIQGNRL 185 (264)
T ss_pred EeeccCchh-hCcHHHHHH--HHHHHHhccccee
Confidence 555555554 445555555 5555555555544
No 32
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.04 E-value=2.8e-10 Score=111.27 Aligned_cols=274 Identities=19% Similarity=0.249 Sum_probs=191.0
Q ss_pred eeEEEecCCCCccCCcchHHHHHHHHhhcCCCccEEEcCCCC-CChhHHHHHHHHHHhcCCCcCEEEccCCC-CCCcccc
Q 007479 259 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH-LDRDFGRMVFSSLLEASSSLSILDLSGNS-IGGWLSK 336 (602)
Q Consensus 259 L~~L~l~~~~l~~~~~~~l~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~~~~ 336 (602)
|+.|++.+|.=... ..+-.+..+++++++|++.++. +++.... .+-..++.|++|++..|. +++
T Consensus 140 lk~LSlrG~r~v~~------sslrt~~~~CpnIehL~l~gc~~iTd~s~~----sla~~C~~l~~l~L~~c~~iT~---- 205 (483)
T KOG4341|consen 140 LKELSLRGCRAVGD------SSLRTFASNCPNIEHLALYGCKKITDSSLL----SLARYCRKLRHLNLHSCSSITD---- 205 (483)
T ss_pred cccccccccccCCc------chhhHHhhhCCchhhhhhhcceeccHHHHH----HHHHhcchhhhhhhcccchhHH----
Confidence 66677776653221 1244455788999999999884 4544443 445779999999999974 554
Q ss_pred cCCCChhhhhh-cCCCCCCccEEEecCC-CCChhhHHHHHHHhccCCCccEEEecCC-CCChhhHHhHHHHHHHhhcCCC
Q 007479 337 YDRSGPLFSLG-AGKSLQSLRLLNLRGN-NLCKADARDLGSALVHIPNLEILDISDN-TIEDDGIRSLIPYFVQASERCN 413 (602)
Q Consensus 337 ~~~~~l~~~l~-~l~~l~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~L~~L~Ls~n-~l~~~g~~~l~p~l~~~l~~~~ 413 (602)
..+. .-..|++|++++++.+ .|++.+++.+..+ ...++.+.+.+| .++.+ .+. ..-+.+.
T Consensus 206 -------~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG---~~~l~~~~~kGC~e~~le---~l~----~~~~~~~ 268 (483)
T KOG4341|consen 206 -------VSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG---CKELEKLSLKGCLELELE---ALL----KAAAYCL 268 (483)
T ss_pred -------HHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc---chhhhhhhhcccccccHH---HHH----HHhccCh
Confidence 2222 2237899999999998 6888887776544 445777777776 34443 222 2224455
Q ss_pred CccEEEcccCC-CChHHHHHHHHHHhcCCCCCcEEEccCC-CCChHHHHHHHHHhcCCccEEEeeccC-CChhHHHHHHH
Q 007479 414 PLVELYLENCE-LSGRGVSQLLDTLSTLRRPPTSLSIADN-NLGSHIAASLGKFFGTSVQVLNIGAIG-LGSSGFRVLQD 490 (602)
Q Consensus 414 ~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~L~~L~L~~n~-l~~~~~~~l~~ 490 (602)
-+..+++..|. +++.++-.+..... .|+.|+.+++ .+++.....+++. +.+|+.|-++.|. +++.|+..+..
T Consensus 269 ~i~~lnl~~c~~lTD~~~~~i~~~c~----~lq~l~~s~~t~~~d~~l~aLg~~-~~~L~~l~l~~c~~fsd~~ft~l~r 343 (483)
T KOG4341|consen 269 EILKLNLQHCNQLTDEDLWLIACGCH----ALQVLCYSSCTDITDEVLWALGQH-CHNLQVLELSGCQQFSDRGFTMLGR 343 (483)
T ss_pred HhhccchhhhccccchHHHHHhhhhh----HhhhhcccCCCCCchHHHHHHhcC-CCceEEEeccccchhhhhhhhhhhc
Confidence 67777776664 77766444333322 3899999885 6788888888865 3789999999995 88889877764
Q ss_pred HhhcCCCccEEeCcCCCCChHHHHHHHHhCccCCCccEEEccCCC-CCHHHHHHHHHHHhhcCCCccEEEecCCCCCCCh
Q 007479 491 GVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNL-MPLESLTIICSALKVAKGHLQRLDLTGNNWELQP 569 (602)
Q Consensus 491 ~l~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~N~l~~~~ 569 (602)
+.+.|+.+++-.+..+..+ .|.++-.+++.|+++.++++. |+++|+..+...-.... .|..+.|+++... .+
T Consensus 344 ---n~~~Le~l~~e~~~~~~d~--tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~-~l~~lEL~n~p~i-~d 416 (483)
T KOG4341|consen 344 ---NCPHLERLDLEECGLITDG--TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE-GLEVLELDNCPLI-TD 416 (483)
T ss_pred ---CChhhhhhcccccceehhh--hHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc-ccceeeecCCCCc-hH
Confidence 4568999999999855444 456666789999999999997 88999888876543333 7889999999875 34
Q ss_pred hHHHHH
Q 007479 570 SHVSML 575 (602)
Q Consensus 570 ~~~~~L 575 (602)
..+.-+
T Consensus 417 ~~Le~l 422 (483)
T KOG4341|consen 417 ATLEHL 422 (483)
T ss_pred HHHHHH
Confidence 344333
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.3e-11 Score=118.27 Aligned_cols=239 Identities=20% Similarity=0.173 Sum_probs=132.0
Q ss_pred EEEecCCCCccCCcchHHHHHHHHhhcCCCccEEEcCCCCCChhHHHHHHHHHHhcCCCcCEEEccCCCCCCcccccCCC
Q 007479 261 NLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRS 340 (602)
Q Consensus 261 ~L~l~~~~l~~~~~~~l~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 340 (602)
.+.+++-.+...+... +.+--.++.+|+...|.++.+...+.+.. ...++.++.|||++|-+..+.+
T Consensus 97 ~~si~nK~vE~iGfDk----i~akQsn~kkL~~IsLdn~~V~~~~~~~~----~k~~~~v~~LdLS~NL~~nw~~----- 163 (505)
T KOG3207|consen 97 VLSISNKQVEFIGFDK----IAAKQSNLKKLREISLDNYRVEDAGIEEY----SKILPNVRDLDLSRNLFHNWFP----- 163 (505)
T ss_pred HhhhcCceeEEecHHH----HHHHhhhHHhhhheeecCccccccchhhh----hhhCCcceeecchhhhHHhHHH-----
Confidence 4666666666644444 44445677788888888877765443322 3457888888888887776433
Q ss_pred ChhhhhhcCCCCCCccEEEecCCCCChhhHHHHHHHhccCCCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEc
Q 007479 341 GPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYL 420 (602)
Q Consensus 341 ~l~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L 420 (602)
+... ...+++|+.|+++.|.+....-... ...+++|+.|.++.|+++...+..+. ..+++|+.|+|
T Consensus 164 -v~~i---~eqLp~Le~LNls~Nrl~~~~~s~~---~~~l~~lK~L~l~~CGls~k~V~~~~-------~~fPsl~~L~L 229 (505)
T KOG3207|consen 164 -VLKI---AEQLPSLENLNLSSNRLSNFISSNT---TLLLSHLKQLVLNSCGLSWKDVQWIL-------LTFPSLEVLYL 229 (505)
T ss_pred -HHHH---HHhcccchhcccccccccCCccccc---hhhhhhhheEEeccCCCCHHHHHHHH-------HhCCcHHHhhh
Confidence 2222 2356778888888876654211111 12456777777777777765544432 23377777777
Q ss_pred ccCC-CChHHHHHHHHHHhcCCCCCcEEEccCCCCChHH-HHHHHHHhcCCccEEEeeccCCChhHHHHH--HHHhhcCC
Q 007479 421 ENCE-LSGRGVSQLLDTLSTLRRPPTSLSIADNNLGSHI-AASLGKFFGTSVQVLNIGAIGLGSSGFRVL--QDGVTKEL 496 (602)
Q Consensus 421 ~~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~-~~~l~~~l~~~L~~L~L~~n~l~~~~~~~l--~~~l~~~~ 496 (602)
..|. +.. ......+. +.|++|||++|.+-+.. ...++.+ +.|..|+++.|++++...... .......+
T Consensus 230 ~~N~~~~~---~~~~~~i~---~~L~~LdLs~N~li~~~~~~~~~~l--~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 230 EANEIILI---KATSTKIL---QTLQELDLSNNNLIDFDQGYKVGTL--PGLNQLNLSSTGIASIAEPDVESLDKTHTFP 301 (505)
T ss_pred hcccccce---ecchhhhh---hHHhhccccCCcccccccccccccc--cchhhhhccccCcchhcCCCccchhhhcccc
Confidence 7774 211 11122222 24777777777664322 2334455 677777777777654321100 01112244
Q ss_pred CccEEeCcCCCCChHHHHHHHHhCccCCCccEEEccCCCCC
Q 007479 497 KLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMP 537 (602)
Q Consensus 497 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 537 (602)
+|++|+++.|+|.+-. .+- -+...++|+.|.+..|.++
T Consensus 302 kL~~L~i~~N~I~~w~--sl~-~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 302 KLEYLNISENNIRDWR--SLN-HLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cceeeecccCcccccc--ccc-hhhccchhhhhhccccccc
Confidence 6677777766653211 111 1233555666666666554
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2e-11 Score=119.83 Aligned_cols=221 Identities=23% Similarity=0.213 Sum_probs=125.7
Q ss_pred hccCCccEEEeccccchHHHHHHHHHHHhcCCCccEEEccCCCCChhH-HHHHHHHhhcccccCCceeEEEecCCCCccC
Q 007479 194 LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSF-VEGICRSLCSKRKRIHKIENLSIDISSFIEN 272 (602)
Q Consensus 194 ~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~-~~~l~~~L~~~~~~~~~L~~L~l~~~~l~~~ 272 (602)
+++.+|++..|.++.+...... .....|+++++|+|++|-|.... +..+++ ++++|+.|.++.|.+..-
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~nw~~v~~i~e-------qLp~Le~LNls~Nrl~~~ 187 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHNWFPVLKIAE-------QLPSLENLNLSSNRLSNF 187 (505)
T ss_pred hhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHhHHHHHHHHH-------hcccchhcccccccccCC
Confidence 4567888888888755433221 34678899999999999877632 223333 267788888888877541
Q ss_pred CcchHHHHHHHHhhcCCCccEEEcCCCCCChhHHHHHHHHHHhcCCCcCEEEccCCCCCCcccccCCCChhhhhhcCCCC
Q 007479 273 CPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSL 352 (602)
Q Consensus 273 ~~~~l~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~~l~~l~~l 352 (602)
...... ..+++|+.|.|+.|.++......+ ...+++|+.|+|..|..... ...+.. -+
T Consensus 188 ~~s~~~-------~~l~~lK~L~l~~CGls~k~V~~~----~~~fPsl~~L~L~~N~~~~~------~~~~~~-----i~ 245 (505)
T KOG3207|consen 188 ISSNTT-------LLLSHLKQLVLNSCGLSWKDVQWI----LLTFPSLEVLYLEANEIILI------KATSTK-----IL 245 (505)
T ss_pred ccccch-------hhhhhhheEEeccCCCCHHHHHHH----HHhCCcHHHhhhhcccccce------ecchhh-----hh
Confidence 111111 244788888888888886555444 33468888888888842110 001111 23
Q ss_pred CCccEEEecCCCCChhhHHHHHHHhccCCCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCCCChHHHHH
Q 007479 353 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ 432 (602)
Q Consensus 353 ~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 432 (602)
+.|++|+|++|++-+.. .....+.++.|+.|+++.|++++-..-.. .. .......++|++|++..|++.+-.
T Consensus 246 ~~L~~LdLs~N~li~~~---~~~~~~~l~~L~~Lnls~tgi~si~~~d~-~s-~~kt~~f~kL~~L~i~~N~I~~w~--- 317 (505)
T KOG3207|consen 246 QTLQELDLSNNNLIDFD---QGYKVGTLPGLNQLNLSSTGIASIAEPDV-ES-LDKTHTFPKLEYLNISENNIRDWR--- 317 (505)
T ss_pred hHHhhccccCCcccccc---cccccccccchhhhhccccCcchhcCCCc-cc-hhhhcccccceeeecccCcccccc---
Confidence 57888888888766531 22345677788888888877765210000 00 001122356666666666663310
Q ss_pred HHHHHhcCCCCCcEEEccCCCCC
Q 007479 433 LLDTLSTLRRPPTSLSIADNNLG 455 (602)
Q Consensus 433 l~~~l~~~~~~L~~L~Ls~n~l~ 455 (602)
....+..+. +|+.|.+..|.++
T Consensus 318 sl~~l~~l~-nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 318 SLNHLRTLE-NLKHLRITLNYLN 339 (505)
T ss_pred ccchhhccc-hhhhhhccccccc
Confidence 112222222 3555555555553
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.97 E-value=1.4e-10 Score=108.51 Aligned_cols=130 Identities=22% Similarity=0.229 Sum_probs=88.2
Q ss_pred CCCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCCCChHHHHHHHHHHhcCCCCCcEEEccCCCCChHHH
Q 007479 380 IPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGSHIA 459 (602)
Q Consensus 380 l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 459 (602)
...|+.+|||+|.|+. +. ++.+-.+.++.|++++|.+... ..+..+. +|+.||+|+|.++ ...
T Consensus 283 Wq~LtelDLS~N~I~~------iD---ESvKL~Pkir~L~lS~N~i~~v------~nLa~L~-~L~~LDLS~N~Ls-~~~ 345 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQ------ID---ESVKLAPKLRRLILSQNRIRTV------QNLAELP-QLQLLDLSGNLLA-ECV 345 (490)
T ss_pred Hhhhhhccccccchhh------hh---hhhhhccceeEEeccccceeee------hhhhhcc-cceEeecccchhH-hhh
Confidence 3467777888877764 32 3444447777888888877763 2244444 4888888888877 444
Q ss_pred HHHHHHhcCCccEEEeeccCCChhHHHHHHHHhhcCCCccEEeCcCCCCChHHHHHHHHhCccCCCccEEEccCCCCC
Q 007479 460 ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMP 537 (602)
Q Consensus 460 ~~l~~~l~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 537 (602)
.+-.++ .+++.|.|++|.|. .+. .+.++-+|..||+++|+|..-.. ...++++|.|+++.|.+|.+.
T Consensus 346 Gwh~KL--GNIKtL~La~N~iE-----~LS-GL~KLYSLvnLDl~~N~Ie~lde---V~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 346 GWHLKL--GNIKTLKLAQNKIE-----TLS-GLRKLYSLVNLDLSSNQIEELDE---VNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhHhhh--cCEeeeehhhhhHh-----hhh-hhHhhhhheeccccccchhhHHH---hcccccccHHHHHhhcCCCcc
Confidence 555566 78888888888773 332 34456678888999888754332 234778899999999999865
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=1.9e-10 Score=103.29 Aligned_cols=15 Identities=20% Similarity=0.073 Sum_probs=4.5
Q ss_pred cCCCccEEeCcCCCC
Q 007479 494 KELKLVNINISKNRG 508 (602)
Q Consensus 494 ~~~~L~~L~Ls~N~l 508 (602)
.+++|+.|+|.+|.+
T Consensus 111 ~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 111 SLPKLRVLSLEGNPV 125 (175)
T ss_dssp G-TT--EEE-TT-GG
T ss_pred cCCCcceeeccCCcc
Confidence 344444444444443
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=3.3e-10 Score=101.81 Aligned_cols=129 Identities=23% Similarity=0.274 Sum_probs=46.3
Q ss_pred CCCCccEEEecCCCCChhhHHHHHHHhc-cCCCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCCCChHH
Q 007479 351 SLQSLRLLNLRGNNLCKADARDLGSALV-HIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG 429 (602)
Q Consensus 351 ~l~~L~~L~L~~n~l~~~~~~~l~~~l~-~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~ 429 (602)
++..+++|+|.+|.|+. +. .+. .+.+|+.|++++|.|+. + ..+..+++|+.|++++|.+++.+
T Consensus 17 n~~~~~~L~L~~n~I~~-----Ie-~L~~~l~~L~~L~Ls~N~I~~------l----~~l~~L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-----IE-NLGATLDKLEVLDLSNNQITK------L----EGLPGLPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS--S------------TT----TT--EEE--SS---S-C
T ss_pred ccccccccccccccccc-----cc-chhhhhcCCCEEECCCCCCcc------c----cCccChhhhhhcccCCCCCCccc
Confidence 45577888888888876 32 233 46778888888888876 4 44556688888888888888732
Q ss_pred HHHHHHHH-hcCCCCCcEEEccCCCCChH-HHHHHHHHhcCCccEEEeeccCCChhHHHHHHHHhhcCCCccEEeCc
Q 007479 430 VSQLLDTL-STLRRPPTSLSIADNNLGSH-IAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIS 504 (602)
Q Consensus 430 ~~~l~~~l-~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 504 (602)
..+ ..++ +|++|++++|+|.+. ....+..+ ++|+.|++.+|.+++.. .+-.-.+..+|+|+.||-.
T Consensus 81 -----~~l~~~lp-~L~~L~L~~N~I~~l~~l~~L~~l--~~L~~L~L~~NPv~~~~-~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 81 -----EGLDKNLP-NLQELYLSNNKISDLNELEPLSSL--PKLRVLSLEGNPVCEKK-NYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -----HHHHHH-T-T--EEE-TTS---SCCCCGGGGG---TT--EEE-TT-GGGGST-THHHHHHHH-TT-SEETTE
T ss_pred -----cchHHhCC-cCCEEECcCCcCCChHHhHHHHcC--CCcceeeccCCcccchh-hHHHHHHHHcChhheeCCE
Confidence 222 1233 488888888887542 23445555 88999999999887553 2223345556677777654
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.85 E-value=1.1e-09 Score=102.60 Aligned_cols=131 Identities=21% Similarity=0.195 Sum_probs=103.1
Q ss_pred CCCCccEEEecCCCCChhhHHHHHHHhccCCCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCCCChHHH
Q 007479 351 SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGV 430 (602)
Q Consensus 351 ~l~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~~ 430 (602)
....|+++++++|.|+. +-++..-.|.++.|++|.|.|... ..+..+.+|+.|+|++|.++.
T Consensus 282 TWq~LtelDLS~N~I~~-----iDESvKL~Pkir~L~lS~N~i~~v----------~nLa~L~~L~~LDLS~N~Ls~--- 343 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQ-----IDESVKLAPKLRRLILSQNRIRTV----------QNLAELPQLQLLDLSGNLLAE--- 343 (490)
T ss_pred hHhhhhhccccccchhh-----hhhhhhhccceeEEeccccceeee----------hhhhhcccceEeecccchhHh---
Confidence 45689999999999987 777778889999999999999863 335566899999999999887
Q ss_pred HHHHHHHhcCCCCCcEEEccCCCCChHHHHHHHHHhcCCccEEEeeccCCChhHHHHHHHHhhcCCCccEEeCcCCCCC
Q 007479 431 SQLLDTLSTLRRPPTSLSIADNNLGSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGG 509 (602)
Q Consensus 431 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~ 509 (602)
+-.+-.++. +++.|.+++|.+. ....+.++ -+|..||+++|+|.... -...+.+++.|+++.|.+|.+.
T Consensus 344 --~~Gwh~KLG-NIKtL~La~N~iE--~LSGL~KL--YSLvnLDl~~N~Ie~ld---eV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 344 --CVGWHLKLG-NIKTLKLAQNKIE--TLSGLRKL--YSLVNLDLSSNQIEELD---EVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred --hhhhHhhhc-CEeeeehhhhhHh--hhhhhHhh--hhheeccccccchhhHH---HhcccccccHHHHHhhcCCCcc
Confidence 233333333 5999999999885 34556777 78999999999985432 1456788899999999999854
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.77 E-value=2.9e-09 Score=111.35 Aligned_cols=174 Identities=24% Similarity=0.327 Sum_probs=90.4
Q ss_pred CCcCEEEccCCCCCCcccccCCCChhhhhhcCCCC-CCccEEEecCCCCChhhHHHHHHHhccCCCccEEEecCCCCChh
Q 007479 318 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSL-QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDD 396 (602)
Q Consensus 318 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~~l~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~ 396 (602)
..++.|++.+|.+++- ..... .. ++|+.|++++|.+.. ++..+..+++|+.|++++|.+++
T Consensus 116 ~~l~~L~l~~n~i~~i---------~~~~~---~~~~nL~~L~l~~N~i~~-----l~~~~~~l~~L~~L~l~~N~l~~- 177 (394)
T COG4886 116 TNLTSLDLDNNNITDI---------PPLIG---LLKSNLKELDLSDNKIES-----LPSPLRNLPNLKNLDLSFNDLSD- 177 (394)
T ss_pred cceeEEecCCcccccC---------ccccc---cchhhcccccccccchhh-----hhhhhhccccccccccCCchhhh-
Confidence 4566666666666541 11111 12 256666666666665 44445666666666666666665
Q ss_pred hHHhHHHHHHHhhcCCCCccEEEcccCCCChHHHHHHHHHHhcCCCCCcEEEccCCCCChHHHHHHHHHhcCCccEEEee
Q 007479 397 GIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGSHIAASLGKFFGTSVQVLNIG 476 (602)
Q Consensus 397 g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~L~~L~L~ 476 (602)
+|. .......|+.|++++|.+.. ++....... .|++|++++|++. ..+..+... .++..+.+.
T Consensus 178 -----l~~---~~~~~~~L~~L~ls~N~i~~-----l~~~~~~~~-~L~~l~~~~N~~~-~~~~~~~~~--~~l~~l~l~ 240 (394)
T COG4886 178 -----LPK---LLSNLSNLNNLDLSGNKISD-----LPPEIELLS-ALEELDLSNNSII-ELLSSLSNL--KNLSGLELS 240 (394)
T ss_pred -----hhh---hhhhhhhhhheeccCCcccc-----Cchhhhhhh-hhhhhhhcCCcce-ecchhhhhc--ccccccccC
Confidence 431 11133566666666666665 333322222 3666666666432 233334444 555555566
Q ss_pred ccCCChhHHHHHHHHhhcCCCccEEeCcCCCCChHHHHHHHHhCccCCCccEEEccCCCCC
Q 007479 477 AIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMP 537 (602)
Q Consensus 477 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 537 (602)
+|.+... ...+...+.++.|++++|.+++... ++...+++.|++++|.+.
T Consensus 241 ~n~~~~~-----~~~~~~l~~l~~L~~s~n~i~~i~~------~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 241 NNKLEDL-----PESIGNLSNLETLDLSNNQISSISS------LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred Cceeeec-----cchhccccccceecccccccccccc------ccccCccCEEeccCcccc
Confidence 6555321 2233344456666666666544332 344566666666666554
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.70 E-value=5.5e-10 Score=113.21 Aligned_cols=148 Identities=23% Similarity=0.297 Sum_probs=84.1
Q ss_pred eeEEEecCCCCccCCcchHHHHHHHHhhcCCCccEEEcCCCCCChhHHHHHHHHHHhcCCCcCEEEccCCCCCCcccccC
Q 007479 259 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD 338 (602)
Q Consensus 259 L~~L~l~~~~l~~~~~~~l~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~~ 338 (602)
|+.+.+..|.+.. ++..+.++..|..|||+.|.++ ..|..+|. ..|+.|-+++|+++. +|
T Consensus 100 Le~liLy~n~~r~---------ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~------lpLkvli~sNNkl~~-lp--- 159 (722)
T KOG0532|consen 100 LESLILYHNCIRT---------IPEAICNLEALTFLDLSSNQLS-HLPDGLCD------LPLKVLIVSNNKLTS-LP--- 159 (722)
T ss_pred HHHHHHHhcccee---------cchhhhhhhHHHHhhhccchhh-cCChhhhc------CcceeEEEecCcccc-CC---
Confidence 5666666666654 5555677777888888888776 55655542 567777777777653 11
Q ss_pred CCChhhhhhcCCCCCCccEEEecCCCCChhhHHHHHHHhccCCCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEE
Q 007479 339 RSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVEL 418 (602)
Q Consensus 339 ~~~l~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L 418 (602)
..++ ...+|.+|+.+.|.+.. ++..++.+.+|+.|.+..|.+.+ +| +.+.. -.|..|
T Consensus 160 -----~~ig---~~~tl~~ld~s~nei~s-----lpsql~~l~slr~l~vrRn~l~~------lp---~El~~-LpLi~l 216 (722)
T KOG0532|consen 160 -----EEIG---LLPTLAHLDVSKNEIQS-----LPSQLGYLTSLRDLNVRRNHLED------LP---EELCS-LPLIRL 216 (722)
T ss_pred -----cccc---cchhHHHhhhhhhhhhh-----chHHhhhHHHHHHHHHhhhhhhh------CC---HHHhC-Cceeee
Confidence 2222 33455566666665554 55555555566666665555544 33 33332 245555
Q ss_pred EcccCCCChHHHHHHHHHHhcCCCCCcEEEccCCCCC
Q 007479 419 YLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 455 (602)
Q Consensus 419 ~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 455 (602)
|+++|+++. ++..+.++. +|++|-|.+|.+.
T Consensus 217 DfScNkis~-----iPv~fr~m~-~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 217 DFSCNKISY-----LPVDFRKMR-HLQVLQLENNPLQ 247 (722)
T ss_pred ecccCceee-----cchhhhhhh-hheeeeeccCCCC
Confidence 555555555 444455444 2555555555555
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.66 E-value=1.9e-08 Score=105.15 Aligned_cols=193 Identities=27% Similarity=0.350 Sum_probs=136.4
Q ss_pred EEEecCCCCccCCcchHHHHHHHHhhcCCCccEEEcCCCCCChhHHHHHHHHHHhcCC-CcCEEEccCCCCCCcccccCC
Q 007479 261 NLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASS-SLSILDLSGNSIGGWLSKYDR 339 (602)
Q Consensus 261 ~L~l~~~~l~~~~~~~l~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~-~L~~L~Ls~n~i~~~~~~~~~ 339 (602)
.+....+.+.. . ...+.....++.|++.+|.++.--+. . .... +|+.|++++|.+..
T Consensus 97 ~l~~~~~~~~~----~-----~~~~~~~~~l~~L~l~~n~i~~i~~~-~-----~~~~~nL~~L~l~~N~i~~------- 154 (394)
T COG4886 97 SLDLNLNRLRS----N-----ISELLELTNLTSLDLDNNNITDIPPL-I-----GLLKSNLKELDLSDNKIES------- 154 (394)
T ss_pred eeecccccccc----C-----chhhhcccceeEEecCCcccccCccc-c-----ccchhhcccccccccchhh-------
Confidence 57777777633 1 11234557899999999998853332 2 2233 89999999998864
Q ss_pred CChhhhhhcCCCCCCccEEEecCCCCChhhHHHHHHHhccCCCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEE
Q 007479 340 SGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELY 419 (602)
Q Consensus 340 ~~l~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~ 419 (602)
+. ..+..+++|+.|+++.|++++ ++......++|+.|++++|.+.+ +| ...+....|++|.
T Consensus 155 --l~---~~~~~l~~L~~L~l~~N~l~~-----l~~~~~~~~~L~~L~ls~N~i~~------l~---~~~~~~~~L~~l~ 215 (394)
T COG4886 155 --LP---SPLRNLPNLKNLDLSFNDLSD-----LPKLLSNLSNLNNLDLSGNKISD------LP---PEIELLSALEELD 215 (394)
T ss_pred --hh---hhhhccccccccccCCchhhh-----hhhhhhhhhhhhheeccCCcccc------Cc---hhhhhhhhhhhhh
Confidence 11 234467899999999999987 66665578899999999999987 65 2223446699999
Q ss_pred cccCCCChHHHHHHHHHHhcCCCCCcEEEccCCCCChHHHHHHHHHhcCCccEEEeeccCCChhHHHHHHHHhhcCCCcc
Q 007479 420 LENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLV 499 (602)
Q Consensus 420 L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 499 (602)
+++|.+.. .+..+.... ++..+.+.+|++.+. +..++.. ++++.|++++|.+++... +....+++
T Consensus 216 ~~~N~~~~-----~~~~~~~~~-~l~~l~l~~n~~~~~-~~~~~~l--~~l~~L~~s~n~i~~i~~------~~~~~~l~ 280 (394)
T COG4886 216 LSNNSIIE-----LLSSLSNLK-NLSGLELSNNKLEDL-PESIGNL--SNLETLDLSNNQISSISS------LGSLTNLR 280 (394)
T ss_pred hcCCccee-----cchhhhhcc-cccccccCCceeeec-cchhccc--cccceecccccccccccc------ccccCccC
Confidence 99995333 334445444 488888888888742 4555666 779999999999866432 55677899
Q ss_pred EEeCcCCCCC
Q 007479 500 NINISKNRGG 509 (602)
Q Consensus 500 ~L~Ls~N~l~ 509 (602)
+|++++|.+.
T Consensus 281 ~L~~s~n~~~ 290 (394)
T COG4886 281 ELDLSGNSLS 290 (394)
T ss_pred EEeccCcccc
Confidence 9999999854
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.62 E-value=8.8e-10 Score=111.77 Aligned_cols=194 Identities=23% Similarity=0.281 Sum_probs=131.2
Q ss_pred cCEEEccCCCCCCcccccCCCChhhhhhcCCCCCCccEEEecCCCCChhhHHHHHHHhccCCCccEEEecCCCCChhhHH
Q 007479 320 LSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIR 399 (602)
Q Consensus 320 L~~L~Ls~n~i~~~~~~~~~~~l~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~ 399 (602)
-...||+.|++.. +| ..+. .+..|+.+.++.|.+.. ++..++++..|+.+||+.|.++.
T Consensus 77 t~~aDlsrNR~~e-lp--------~~~~---~f~~Le~liLy~n~~r~-----ip~~i~~L~~lt~l~ls~NqlS~---- 135 (722)
T KOG0532|consen 77 TVFADLSRNRFSE-LP--------EEAC---AFVSLESLILYHNCIRT-----IPEAICNLEALTFLDLSSNQLSH---- 135 (722)
T ss_pred hhhhhcccccccc-Cc--------hHHH---HHHHHHHHHHHhcccee-----cchhhhhhhHHHHhhhccchhhc----
Confidence 3456777777653 22 2222 34467777788887776 77778888888888888888875
Q ss_pred hHHHHHHHhhcCCCCccEEEcccCCCChHHHHHHHHHHhcCCCCCcEEEccCCCCChHHHHHHHHHhcCCccEEEeeccC
Q 007479 400 SLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGSHIAASLGKFFGTSVQVLNIGAIG 479 (602)
Q Consensus 400 ~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~L~~L~L~~n~ 479 (602)
+| ..+.. .-|+.|-+++|+++. ++..++.. .+|..||.+.|.+. ..+..++.+ .+|+.|++..|+
T Consensus 136 --lp---~~lC~-lpLkvli~sNNkl~~-----lp~~ig~~-~tl~~ld~s~nei~-slpsql~~l--~slr~l~vrRn~ 200 (722)
T KOG0532|consen 136 --LP---DGLCD-LPLKVLIVSNNKLTS-----LPEEIGLL-PTLAHLDVSKNEIQ-SLPSQLGYL--TSLRDLNVRRNH 200 (722)
T ss_pred --CC---hhhhc-CcceeEEEecCcccc-----CCcccccc-hhHHHhhhhhhhhh-hchHHhhhH--HHHHHHHHhhhh
Confidence 44 33333 358888888888887 66666633 35888888888887 677778877 888888888888
Q ss_pred CChhHHHHHHHHhhcCCCccEEeCcCCCCChHHHHHHHHhCccCCCccEEEccCCCCCHHHHHHHHHHHhhcCCCccEEE
Q 007479 480 LGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLD 559 (602)
Q Consensus 480 l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~ 559 (602)
+ ..++..+. .-.|..||+|+|++.. ++-.+.+++.|++|-|.+|.+....++ ++.. ..-.-.|+|+
T Consensus 201 l-----~~lp~El~-~LpLi~lDfScNkis~-----iPv~fr~m~~Lq~l~LenNPLqSPPAq-IC~k--GkVHIFKyL~ 266 (722)
T KOG0532|consen 201 L-----EDLPEELC-SLPLIRLDFSCNKISY-----LPVDFRKMRHLQVLQLENNPLQSPPAQ-ICEK--GKVHIFKYLS 266 (722)
T ss_pred h-----hhCCHHHh-CCceeeeecccCceee-----cchhhhhhhhheeeeeccCCCCCChHH-HHhc--cceeeeeeec
Confidence 7 44455555 3358889999998743 333456688899999998888754433 3321 1111346666
Q ss_pred ecCC
Q 007479 560 LTGN 563 (602)
Q Consensus 560 L~~N 563 (602)
..-+
T Consensus 267 ~qA~ 270 (722)
T KOG0532|consen 267 TQAC 270 (722)
T ss_pred chhc
Confidence 6555
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.45 E-value=7.5e-09 Score=108.49 Aligned_cols=105 Identities=30% Similarity=0.382 Sum_probs=48.0
Q ss_pred CCceeEEEecCCCCccCCcchHHHHHHHHhhcCCCccEEEcCCCCCChhHHHHHHHHHHhcCCCcCEEEccCCCCCCccc
Q 007479 256 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 335 (602)
Q Consensus 256 ~~~L~~L~l~~~~l~~~~~~~l~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~ 335 (602)
+.+|+.+++.+|.+.. +...+..+.+|++|++++|.|+..-+- ..++.|+.|++++|.|.+
T Consensus 94 ~~~l~~l~l~~n~i~~---------i~~~l~~~~~L~~L~ls~N~I~~i~~l-------~~l~~L~~L~l~~N~i~~--- 154 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEK---------IENLLSSLVNLQVLDLSFNKITKLEGL-------STLTLLKELNLSGNLISD--- 154 (414)
T ss_pred ccceeeeeccccchhh---------cccchhhhhcchheeccccccccccch-------hhccchhhheeccCcchh---
Confidence 3445555555555543 111134445555555555555532221 123445555555555533
Q ss_pred ccCCCChhhhhhcCCCCCCccEEEecCCCCChhhHHHHHHH-hccCCCccEEEecCCCCC
Q 007479 336 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSA-LVHIPNLEILDISDNTIE 394 (602)
Q Consensus 336 ~~~~~~l~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~-l~~l~~L~~L~Ls~n~l~ 394 (602)
+..+..+..|+.+++++|.+.. +... +..+.+++.+.+.+|.+.
T Consensus 155 ----------~~~~~~l~~L~~l~l~~n~i~~-----ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 155 ----------ISGLESLKSLKLLDLSYNRIVD-----IENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred ----------ccCCccchhhhcccCCcchhhh-----hhhhhhhhccchHHHhccCCchh
Confidence 1222234455555555555554 1111 244445555555555544
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.38 E-value=1.8e-08 Score=105.55 Aligned_cols=172 Identities=24% Similarity=0.252 Sum_probs=78.5
Q ss_pred CCCcCEEEccCCCCCCcccccCCCChhhhhhc-CCCCCCccEEEecCCCCChhhHHHHHHHhccCCCccEEEecCCCCCh
Q 007479 317 SSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA-GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 395 (602)
Q Consensus 317 ~~~L~~L~Ls~n~i~~~~~~~~~~~l~~~l~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~ 395 (602)
+.+|..|++.+|.|.. +.. +..+++|++|++++|.|+. + ..+..++.|+.|++++|.|++
T Consensus 94 ~~~l~~l~l~~n~i~~-------------i~~~l~~~~~L~~L~ls~N~I~~-----i-~~l~~l~~L~~L~l~~N~i~~ 154 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEK-------------IENLLSSLVNLQVLDLSFNKITK-----L-EGLSTLTLLKELNLSGNLISD 154 (414)
T ss_pred ccceeeeeccccchhh-------------cccchhhhhcchheecccccccc-----c-cchhhccchhhheeccCcchh
Confidence 4556666666665543 111 2345556666666665554 1 113334445556666665554
Q ss_pred hhHHhHHHHHHHhhcCCCCccEEEcccCCCChHHHHHHHHHHhcCCCCCcEEEccCCCCChHHHHHHHHHhcCCccEEEe
Q 007479 396 DGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGSHIAASLGKFFGTSVQVLNI 475 (602)
Q Consensus 396 ~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~L~~L~L 475 (602)
+ ..+..+..|+.+++++|.+...... . +..+. .++.+++++|.+.... .+... ..+..+++
T Consensus 155 ------~----~~~~~l~~L~~l~l~~n~i~~ie~~---~-~~~~~-~l~~l~l~~n~i~~i~--~~~~~--~~l~~~~l 215 (414)
T KOG0531|consen 155 ------I----SGLESLKSLKLLDLSYNRIVDIEND---E-LSELI-SLEELDLGGNSIREIE--GLDLL--KKLVLLSL 215 (414)
T ss_pred ------c----cCCccchhhhcccCCcchhhhhhhh---h-hhhcc-chHHHhccCCchhccc--chHHH--HHHHHhhc
Confidence 2 2333345555556655555542110 0 12222 2555555555553211 11111 22233355
Q ss_pred eccCCChhHHHHHHHHhhcCC--CccEEeCcCCCCChHHHHHHHHhCccCCCccEEEccCCCCC
Q 007479 476 GAIGLGSSGFRVLQDGVTKEL--KLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMP 537 (602)
Q Consensus 476 ~~n~l~~~~~~~l~~~l~~~~--~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 537 (602)
..|.++... .+.... +|+.+++++|++.... ..+...+.+..|++.+|.+.
T Consensus 216 ~~n~i~~~~------~l~~~~~~~L~~l~l~~n~i~~~~-----~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 216 LDNKISKLE------GLNELVMLHLRELYLSGNRISRSP-----EGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred ccccceecc------CcccchhHHHHHHhcccCcccccc-----ccccccccccccchhhcccc
Confidence 555443211 011111 2666666666654321 22344666666666666654
No 45
>PLN03150 hypothetical protein; Provisional
Probab=98.28 E-value=1e-06 Score=96.81 Aligned_cols=108 Identities=20% Similarity=0.297 Sum_probs=80.9
Q ss_pred CccEEEecCCCCChhhHHHHHHHhccCCCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCCCChHHHHHH
Q 007479 354 SLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL 433 (602)
Q Consensus 354 ~L~~L~L~~n~l~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 433 (602)
.++.|+|++|.++. .++..+..+++|+.|+|++|.+... +| ..++.+++|+.|+|++|.+++. +
T Consensus 419 ~v~~L~L~~n~L~g----~ip~~i~~L~~L~~L~Ls~N~l~g~-----iP---~~~~~l~~L~~LdLs~N~lsg~----i 482 (623)
T PLN03150 419 FIDGLGLDNQGLRG----FIPNDISKLRHLQSINLSGNSIRGN-----IP---PSLGSITSLEVLDLSYNSFNGS----I 482 (623)
T ss_pred EEEEEECCCCCccc----cCCHHHhCCCCCCEEECCCCcccCc-----CC---hHHhCCCCCCEEECCCCCCCCC----C
Confidence 46778888888876 3666778888888888888887654 55 4566778888888888888765 5
Q ss_pred HHHHhcCCCCCcEEEccCCCCChHHHHHHHHHhcCCccEEEeeccC
Q 007479 434 LDTLSTLRRPPTSLSIADNNLGSHIAASLGKFFGTSVQVLNIGAIG 479 (602)
Q Consensus 434 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~L~~L~L~~n~ 479 (602)
+..+..+. +|+.|++++|.+++..|..+.... .++..+++.+|.
T Consensus 483 P~~l~~L~-~L~~L~Ls~N~l~g~iP~~l~~~~-~~~~~l~~~~N~ 526 (623)
T PLN03150 483 PESLGQLT-SLRILNLNGNSLSGRVPAALGGRL-LHRASFNFTDNA 526 (623)
T ss_pred chHHhcCC-CCCEEECcCCcccccCChHHhhcc-ccCceEEecCCc
Confidence 66677766 488888888888888887776542 456778888775
No 46
>PLN03150 hypothetical protein; Provisional
Probab=98.24 E-value=1.3e-06 Score=96.06 Aligned_cols=107 Identities=20% Similarity=0.348 Sum_probs=72.5
Q ss_pred CccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCCCChHHHHHHHHHHhcCCCCCcEEEccCCCCChHHHHH
Q 007479 382 NLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGSHIAAS 461 (602)
Q Consensus 382 ~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 461 (602)
.++.|+|++|.+... +| ..+..+++|+.|+|++|.+++. ++..+..+. +|+.|++++|.+++..+..
T Consensus 419 ~v~~L~L~~n~L~g~-----ip---~~i~~L~~L~~L~Ls~N~l~g~----iP~~~~~l~-~L~~LdLs~N~lsg~iP~~ 485 (623)
T PLN03150 419 FIDGLGLDNQGLRGF-----IP---NDISKLRHLQSINLSGNSIRGN----IPPSLGSIT-SLEVLDLSYNSFNGSIPES 485 (623)
T ss_pred EEEEEECCCCCcccc-----CC---HHHhCCCCCCEEECCCCcccCc----CChHHhCCC-CCCEEECCCCCCCCCCchH
Confidence 367778888777653 55 4566677888888888887764 555666665 4888888888887777777
Q ss_pred HHHHhcCCccEEEeeccCCChhHHHHHHHHhhc-CCCccEEeCcCCC
Q 007479 462 LGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTK-ELKLVNINISKNR 507 (602)
Q Consensus 462 l~~~l~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~N~ 507 (602)
++.+ ++|+.|+|++|.++.. ++..+.. ..++..+++++|.
T Consensus 486 l~~L--~~L~~L~Ls~N~l~g~----iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 486 LGQL--TSLRILNLNGNSLSGR----VPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred HhcC--CCCCEEECcCCccccc----CChHHhhccccCceEEecCCc
Confidence 7777 7888888888876422 2222222 2356677777776
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=5.8e-07 Score=84.63 Aligned_cols=219 Identities=19% Similarity=0.184 Sum_probs=123.4
Q ss_pred CCccEEEcCCCCCChhHHHHHHHHHHhcCCCcCEEEccCCCCCCcccccCCCChhhhhhcCCCCCCccEEEecCCCCChh
Q 007479 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKA 368 (602)
Q Consensus 289 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~~l~~l~~l~~L~~L~L~~n~l~~~ 368 (602)
+.++.|-+.++.|...+....+ ...+..++++||.+|.|++| +.+...+.+++.|+.|+++.|+++..
T Consensus 45 ra~ellvln~~~id~~gd~~~~---~~~~~~v~elDL~~N~iSdW---------seI~~ile~lP~l~~LNls~N~L~s~ 112 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLF---GSSVTDVKELDLTGNLISDW---------SEIGAILEQLPALTTLNLSCNSLSSD 112 (418)
T ss_pred cchhhheecCCCCCcchhHHHH---HHHhhhhhhhhcccchhccH---------HHHHHHHhcCccceEeeccCCcCCCc
Confidence 4455666666666655444332 23456777788888877763 22333344677788888888877752
Q ss_pred hHHHHHHHhccCCCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCCCChHHHHHHHHHHhcCCCCCcEEE
Q 007479 369 DARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLS 448 (602)
Q Consensus 369 ~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~ 448 (602)
++.+| ....+|+.|-|.+..+.-..+. ..+..++.+++|.++.|.+...... ......+...+++|.
T Consensus 113 -I~~lp---~p~~nl~~lVLNgT~L~w~~~~-------s~l~~lP~vtelHmS~N~~rq~n~D--d~c~e~~s~~v~tlh 179 (418)
T KOG2982|consen 113 -IKSLP---LPLKNLRVLVLNGTGLSWTQST-------SSLDDLPKVTELHMSDNSLRQLNLD--DNCIEDWSTEVLTLH 179 (418)
T ss_pred -cccCc---ccccceEEEEEcCCCCChhhhh-------hhhhcchhhhhhhhccchhhhhccc--cccccccchhhhhhh
Confidence 11222 2345777777777776643222 3344456677777776632110000 000011111244444
Q ss_pred ccCCCCCh-HHHHHHHHHhcCCccEEEeeccCCChhHHHHHHHHhhcCCCccEEeCcCCCCChHHHHHHHHhCccCCCcc
Q 007479 449 IADNNLGS-HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELV 527 (602)
Q Consensus 449 Ls~n~l~~-~~~~~l~~~l~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~L~ 527 (602)
+-.|...- .....++..+ +++..+.+..|.+.+...+ ......+.+..|+|+.|+|++-.+ ...+...+.|.
T Consensus 180 ~~~c~~~~w~~~~~l~r~F-pnv~sv~v~e~PlK~~s~e---k~se~~p~~~~LnL~~~~idswas---vD~Ln~f~~l~ 252 (418)
T KOG2982|consen 180 QLPCLEQLWLNKNKLSRIF-PNVNSVFVCEGPLKTESSE---KGSEPFPSLSCLNLGANNIDSWAS---VDALNGFPQLV 252 (418)
T ss_pred cCCcHHHHHHHHHhHHhhc-ccchheeeecCcccchhhc---ccCCCCCcchhhhhcccccccHHH---HHHHcCCchhh
Confidence 44443210 0011122222 7889999999988654432 233345677799999999875443 23466799999
Q ss_pred EEEccCCCCCHH
Q 007479 528 EVNAGYNLMPLE 539 (602)
Q Consensus 528 ~L~Ls~n~l~~~ 539 (602)
.|.+++|.+.+.
T Consensus 253 dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 253 DLRVSENPLSDP 264 (418)
T ss_pred eeeccCCccccc
Confidence 999999997643
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.23 E-value=9.7e-08 Score=99.79 Aligned_cols=126 Identities=19% Similarity=0.148 Sum_probs=74.0
Q ss_pred CccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCCCChHHHHHHHHHHhcCCCCCcEEEccCCCCChHHHHH
Q 007479 382 NLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGSHIAAS 461 (602)
Q Consensus 382 ~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 461 (602)
.|...+.+.|.+.. +. +++.-++.|+.|+|++|+++.. ..+..+++ |++|||+.|.+. .++..
T Consensus 165 ~L~~a~fsyN~L~~------mD---~SLqll~ale~LnLshNk~~~v------~~Lr~l~~-LkhLDlsyN~L~-~vp~l 227 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL------MD---ESLQLLPALESLNLSHNKFTKV------DNLRRLPK-LKHLDLSYNCLR-HVPQL 227 (1096)
T ss_pred hHhhhhcchhhHHh------HH---HHHHHHHHhhhhccchhhhhhh------HHHHhccc-ccccccccchhc-ccccc
Confidence 45566666676653 22 3333346677788888877763 25555554 788888888775 33332
Q ss_pred HHHHhcCCccEEEeeccCCChhHHHHHHHHhhcCCCccEEeCcCCCCChHH-HHHHHHhCccCCCccEEEccCCCC
Q 007479 462 LGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVET-AKFLSKLMPLAPELVEVNAGYNLM 536 (602)
Q Consensus 462 l~~~l~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~-~~~l~~~l~~~~~L~~L~Ls~n~l 536 (602)
-... ..|+.|+|++|.++.. ..+.++.+|+.||+++|-+.+-. ...+ +.+..|+.|+|.||.+
T Consensus 228 ~~~g--c~L~~L~lrnN~l~tL------~gie~LksL~~LDlsyNll~~hseL~pL----wsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 228 SMVG--CKLQLLNLRNNALTTL------RGIENLKSLYGLDLSYNLLSEHSELEPL----WSLSSLIVLWLEGNPL 291 (1096)
T ss_pred chhh--hhheeeeecccHHHhh------hhHHhhhhhhccchhHhhhhcchhhhHH----HHHHHHHHHhhcCCcc
Confidence 1122 4577788887776432 23445557778888877753222 1222 2356677777777774
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.16 E-value=2.9e-07 Score=96.33 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=9.5
Q ss_pred hhccCCccEEEeccccc
Q 007479 193 LLRESKLQSLVLRWIRF 209 (602)
Q Consensus 193 l~~~~~L~~L~Ls~~~~ 209 (602)
+..+..|+.|.+..|.+
T Consensus 105 ifpF~sLr~LElrg~~L 121 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDL 121 (1096)
T ss_pred eccccceeeEEecCcch
Confidence 44555666666665544
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=8e-07 Score=83.70 Aligned_cols=91 Identities=18% Similarity=0.122 Sum_probs=44.7
Q ss_pred HhcCCCccEEEccCCCCChhHHHHHHHHhhcccccCCceeEEEecCCCCccCCcchHHHHHHHHhhcCCCccEEEcCCCC
Q 007479 221 IQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH 300 (602)
Q Consensus 221 ~~~l~~L~~L~L~~~~~~~~~~~~l~~~L~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~l~~~~~L~~L~Ls~n~ 300 (602)
...+.++++|+|..|.+++. ..++..+.+ ++.|+.|+++.|++.. +..++| ....+|+.|-|.+..
T Consensus 67 ~~~~~~v~elDL~~N~iSdW--seI~~ile~----lP~l~~LNls~N~L~s-~I~~lp-------~p~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 67 GSSVTDVKELDLTGNLISDW--SEIGAILEQ----LPALTTLNLSCNSLSS-DIKSLP-------LPLKNLRVLVLNGTG 132 (418)
T ss_pred HHHhhhhhhhhcccchhccH--HHHHHHHhc----CccceEeeccCCcCCC-ccccCc-------ccccceEEEEEcCCC
Confidence 34455666666666666652 222222222 5556666666666543 111111 123456666666665
Q ss_pred CChhHHHHHHHHHHhcCCCcCEEEccCCC
Q 007479 301 LDRDFGRMVFSSLLEASSSLSILDLSGNS 329 (602)
Q Consensus 301 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 329 (602)
+........ ....+.+++|.++.|.
T Consensus 133 L~w~~~~s~----l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 133 LSWTQSTSS----LDDLPKVTELHMSDNS 157 (418)
T ss_pred CChhhhhhh----hhcchhhhhhhhccch
Confidence 554433322 3444555666666553
No 51
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.03 E-value=1.7e-05 Score=85.27 Aligned_cols=102 Identities=25% Similarity=0.283 Sum_probs=50.5
Q ss_pred hhcCCCccEEEcCCC-CCChhHHHHHHHHHHhcCCCcCEEEccCCC-CCCcccccCCCChhhhhhcCCCCCCccEEEecC
Q 007479 285 LSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNS-IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRG 362 (602)
Q Consensus 285 l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~l~~~l~~l~~l~~L~~L~L~~ 362 (602)
...+++|+.|+++++ ......+.... .+...+.+|+.|+++.+. +++.+ + ..+.. .|++|++|.+.+
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~isd~~-------l-~~l~~--~c~~L~~L~l~~ 278 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLL-LLLSICRKLKSLDLSGCGLVTDIG-------L-SALAS--RCPNLETLSLSN 278 (482)
T ss_pred HhhCchhheecccCcccccccchhHhh-hhhhhcCCcCccchhhhhccCchh-------H-HHHHh--hCCCcceEccCC
Confidence 455566666666652 11111111111 123445666666666666 55421 1 11111 256666666666
Q ss_pred CC-CChhhHHHHHHHhccCCCccEEEecCC-CCChhhHHh
Q 007479 363 NN-LCKADARDLGSALVHIPNLEILDISDN-TIEDDGIRS 400 (602)
Q Consensus 363 n~-l~~~~~~~l~~~l~~l~~L~~L~Ls~n-~l~~~g~~~ 400 (602)
+. +++.++..+. ...++|++|+++.+ .+++.|+..
T Consensus 279 c~~lt~~gl~~i~---~~~~~L~~L~l~~c~~~~d~~l~~ 315 (482)
T KOG1947|consen 279 CSNLTDEGLVSIA---ERCPSLRELDLSGCHGLTDSGLEA 315 (482)
T ss_pred CCccchhHHHHHH---HhcCcccEEeeecCccchHHHHHH
Confidence 65 5666555443 34455777777766 334544433
No 52
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.00 E-value=3.3e-05 Score=83.05 Aligned_cols=234 Identities=25% Similarity=0.293 Sum_probs=132.3
Q ss_pred hhcCCCccEEEcCCC-CCChhHHHHHHHHHHhcCCCcCEEEccCC-CCCCcccccCCCChhhhhhcCCCCCCccEEEecC
Q 007479 285 LSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGN-SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRG 362 (602)
Q Consensus 285 l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~l~~~l~~l~~l~~L~~L~L~~ 362 (602)
...++.|+.|.+.++ .+++.....+ ...++.|++|++++| ......+ .........|++|++|+++.
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~-------~~~~~~~~~~~~L~~l~l~~ 252 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDAL----ALKCPNLEELDLSGCCLLITLSP-------LLLLLLLSICRKLKSLDLSG 252 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHH----HhhCchhheecccCcccccccch-------hHhhhhhhhcCCcCccchhh
Confidence 345789999999887 4444332223 355789999999984 2221111 01112334678999999999
Q ss_pred CC-CChhhHHHHHHHhccCCCccEEEecCCC-CChhhHHhHHHHHHHhhcCCCCccEEEcccCCC-ChHHHHHHHHHHhc
Q 007479 363 NN-LCKADARDLGSALVHIPNLEILDISDNT-IEDDGIRSLIPYFVQASERCNPLVELYLENCEL-SGRGVSQLLDTLST 439 (602)
Q Consensus 363 n~-l~~~~~~~l~~~l~~l~~L~~L~Ls~n~-l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~ 439 (602)
+. +++.+++.+... .++|+.|.+.++. +++.|+..+. ..++.|++|++++|.. ++.+...+...
T Consensus 253 ~~~isd~~l~~l~~~---c~~L~~L~l~~c~~lt~~gl~~i~-------~~~~~L~~L~l~~c~~~~d~~l~~~~~~--- 319 (482)
T KOG1947|consen 253 CGLVTDIGLSALASR---CPNLETLSLSNCSNLTDEGLVSIA-------ERCPSLRELDLSGCHGLTDSGLEALLKN--- 319 (482)
T ss_pred hhccCchhHHHHHhh---CCCcceEccCCCCccchhHHHHHH-------HhcCcccEEeeecCccchHHHHHHHHHh---
Confidence 87 888877766544 6789999988886 8988887764 3447799999998874 35444444332
Q ss_pred CCCCCcEEEccCCC----CChHHHHHHHHH-----------hcCCccEEEeeccCCChhHHHHHHHHhhcCCCccEEeCc
Q 007479 440 LRRPPTSLSIADNN----LGSHIAASLGKF-----------FGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIS 504 (602)
Q Consensus 440 ~~~~L~~L~Ls~n~----l~~~~~~~l~~~-----------l~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 504 (602)
+. +|+.|.+.... +++.....+... -+.+++.+.+..+.+++.|. .+.+.
T Consensus 320 c~-~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------------~~~l~ 384 (482)
T KOG1947|consen 320 CP-NLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGL--------------ELSLR 384 (482)
T ss_pred Cc-chhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcch--------------HHHhc
Confidence 22 35555443332 222222211111 01334444444333332221 23333
Q ss_pred CCC-CChHHHHHHHHhCccCCCccEEEccCCC-CCHHHHHHHHHHHhhcCCCccEEEecCCCC
Q 007479 505 KNR-GGVETAKFLSKLMPLAPELVEVNAGYNL-MPLESLTIICSALKVAKGHLQRLDLTGNNW 565 (602)
Q Consensus 505 ~N~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~N~l 565 (602)
+|. ++ .+..... .....++.|+++.+. .++..+...+.. +.+++.+++.+...
T Consensus 385 gc~~l~-~~l~~~~---~~~~~l~~L~l~~~~~~t~~~l~~~~~~----~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 385 GCPNLT-ESLELRL---CRSDSLRVLNLSDCRLVTDKGLRCLADS----CSNLKDLDLSGCRV 439 (482)
T ss_pred CCcccc-hHHHHHh---ccCCccceEecccCccccccchHHHhhh----hhccccCCccCccc
Confidence 333 22 2211111 223337888888887 666666665542 24678888888765
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.98 E-value=2.5e-05 Score=85.86 Aligned_cols=205 Identities=19% Similarity=0.226 Sum_probs=107.4
Q ss_pred ccCCccEEEeccccchHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHH--------HHHHhhcccccCCceeEEEecC
Q 007479 195 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEG--------ICRSLCSKRKRIHKIENLSIDI 266 (602)
Q Consensus 195 ~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~--------l~~~L~~~~~~~~~L~~L~l~~ 266 (602)
..-++.+.++.+.......... ... .+|++|.+.+.......... +.+.+-+. ..-.+|+.|++++
T Consensus 58 ~~f~ltki~l~~~~~~~~~~~~----l~~-~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~-~sr~nL~~LdI~G 131 (699)
T KOG3665|consen 58 RKFNLTKIDLKNVTLQHQTLEM----LRK-QDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNE-ESRQNLQHLDISG 131 (699)
T ss_pred hhheeEEeeccceecchhHHHH----Hhh-ccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhH-HHHHhhhhcCccc
Confidence 3456777777665443333222 333 34888888766543322211 11111110 0134577777777
Q ss_pred CCCccCCcchHHHHHHHHhhcCCCccEEEcCCCCCChhHHHHHHHHHHhcCCCcCEEEccCCCCCCcccccCCCChhhhh
Q 007479 267 SSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSL 346 (602)
Q Consensus 267 ~~l~~~~~~~l~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~~l 346 (602)
...... ..+..+ -..+++|++|.+++-.+...-...+ ..+.++|..||+|+++++. +
T Consensus 132 ~~~~s~---~W~~ki---g~~LPsL~sL~i~~~~~~~~dF~~l----c~sFpNL~sLDIS~TnI~n---------l---- 188 (699)
T KOG3665|consen 132 SELFSN---GWPKKI---GTMLPSLRSLVISGRQFDNDDFSQL----CASFPNLRSLDISGTNISN---------L---- 188 (699)
T ss_pred cchhhc---cHHHHH---hhhCcccceEEecCceecchhHHHH----hhccCccceeecCCCCccC---------c----
Confidence 543321 111121 2345777777777766654433333 4456777778887777754 1
Q ss_pred hcCCCCCCccEEEecCCCCChhhHHHHHHHhccCCCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCCCC
Q 007479 347 GAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELS 426 (602)
Q Consensus 347 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~ 426 (602)
...+++++|++|.+.+-.+.... -...+.++++|++||+|.....+.- +.+..++ +.-..+++|+.||.|++.++
T Consensus 189 ~GIS~LknLq~L~mrnLe~e~~~---~l~~LF~L~~L~vLDIS~~~~~~~~-~ii~qYl-ec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 189 SGISRLKNLQVLSMRNLEFESYQ---DLIDLFNLKKLRVLDISRDKNNDDT-KIIEQYL-ECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHHhccccHHHHhccCCCCCchh---hHHHHhcccCCCeeeccccccccch-HHHHHHH-HhcccCccccEEecCCcchh
Confidence 23346677777777776555411 1123556777777777776544322 1111121 33344567777777777666
Q ss_pred hHHHHHH
Q 007479 427 GRGVSQL 433 (602)
Q Consensus 427 ~~~~~~l 433 (602)
...++.+
T Consensus 264 ~~~le~l 270 (699)
T KOG3665|consen 264 EEILEEL 270 (699)
T ss_pred HHHHHHH
Confidence 6544443
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.94 E-value=4.2e-05 Score=84.08 Aligned_cols=209 Identities=19% Similarity=0.230 Sum_probs=128.8
Q ss_pred chhhhcccccchHHhhHhhhccCCccEEEeccccchHH---------HHHHHHHHH--hcCCCccEEEccCCCC-ChhHH
Q 007479 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEH---------VQALCKLLI--QNSETLASLEFLHCKL-SPSFV 242 (602)
Q Consensus 175 ~l~~L~l~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~---------~~~~~~~~~--~~l~~L~~L~L~~~~~-~~~~~ 242 (602)
++..+++.+.......-...+-..|+++.+.+...... +..+....+ ..-.+|++|++++... +..-+
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~~~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~ 140 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLRKQDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWP 140 (699)
T ss_pred eeEEeeccceecchhHHHHHhhccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccHH
Confidence 45555665533332233333333388888876532111 111222222 2235899999998763 33333
Q ss_pred HHHHHHhhcccccCCceeEEEecCCCCccCCcchHHHHHHHHhhcCCCccEEEcCCCCCChhHHHHHHHHHHhcCCCcCE
Q 007479 243 EGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSI 322 (602)
Q Consensus 243 ~~l~~~L~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~ 322 (602)
..+... +++|++|.+++-.+...+ +.....+.++|..||+|++++++. .. .+.+.+|+.
T Consensus 141 ~kig~~-------LPsL~sL~i~~~~~~~~d-------F~~lc~sFpNL~sLDIS~TnI~nl--~G-----IS~LknLq~ 199 (699)
T KOG3665|consen 141 KKIGTM-------LPSLRSLVISGRQFDNDD-------FSQLCASFPNLRSLDISGTNISNL--SG-----ISRLKNLQV 199 (699)
T ss_pred HHHhhh-------CcccceEEecCceecchh-------HHHHhhccCccceeecCCCCccCc--HH-----HhccccHHH
Confidence 444432 788999999998887633 444457779999999999999864 11 355788999
Q ss_pred EEccCCCCCCcccccCCCChhhhhhcCCCCCCccEEEecCCCCChhh--HHHHHHHhccCCCccEEEecCCCCChhhHHh
Q 007479 323 LDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKAD--ARDLGSALVHIPNLEILDISDNTIEDDGIRS 400 (602)
Q Consensus 323 L~Ls~n~i~~~~~~~~~~~l~~~l~~l~~l~~L~~L~L~~n~l~~~~--~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~ 400 (602)
|.+.+=.+... ..+..+-++++|++||++...-.... ++...+.-..+|+|+.||.|++.+..+-+..
T Consensus 200 L~mrnLe~e~~----------~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ 269 (699)
T KOG3665|consen 200 LSMRNLEFESY----------QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE 269 (699)
T ss_pred HhccCCCCCch----------hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHH
Confidence 98887776541 23344447899999999997655433 3333333456889999999999998765544
Q ss_pred HHHHHHHhhcCCCCccEEEcc
Q 007479 401 LIPYFVQASERCNPLVELYLE 421 (602)
Q Consensus 401 l~p~l~~~l~~~~~L~~L~L~ 421 (602)
++ ...++|+.+..-
T Consensus 270 ll-------~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 270 LL-------NSHPNLQQIAAL 283 (699)
T ss_pred HH-------HhCccHhhhhhh
Confidence 43 223556555433
No 55
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.90 E-value=1.9e-05 Score=89.07 Aligned_cols=110 Identities=17% Similarity=0.154 Sum_probs=71.4
Q ss_pred cCCccEEEeccccchHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHhhcccccCCceeEEEecCCCCccCCcc
Q 007479 196 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (602)
Q Consensus 196 ~~~L~~L~Ls~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~L~~~~~~~~~L~~L~l~~~~l~~~~~~ 275 (602)
.++|++|.+..|.. .........|..++.|+.|+|++|.-....|..+.. +-+|++|+++++.+..
T Consensus 544 ~~~L~tLll~~n~~--~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~--------Li~LryL~L~~t~I~~---- 609 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSD--WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE--------LVHLRYLDLSDTGISH---- 609 (889)
T ss_pred CCccceEEEeecch--hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh--------hhhhhcccccCCCccc----
Confidence 45677777777642 122222333677788888888887766666766665 6668888888887775
Q ss_pred hHHHHHHHHhhcCCCccEEEcCCCCCChhHHHHHHHHHHhcCCCcCEEEccCCC
Q 007479 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS 329 (602)
Q Consensus 276 ~l~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 329 (602)
+|..+.+++.|.+||+..+......+.. ...+.+|++|.+..-.
T Consensus 610 -----LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i-----~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 610 -----LPSGLGNLKKLIYLNLEVTGRLESIPGI-----LLELQSLRVLRLPRSA 653 (889)
T ss_pred -----cchHHHHHHhhheeccccccccccccch-----hhhcccccEEEeeccc
Confidence 6666777788888888776544333222 2335778888777654
No 56
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.86 E-value=2.9e-06 Score=62.44 Aligned_cols=13 Identities=46% Similarity=0.621 Sum_probs=6.6
Q ss_pred CcCEEEccCCCCC
Q 007479 319 SLSILDLSGNSIG 331 (602)
Q Consensus 319 ~L~~L~Ls~n~i~ 331 (602)
+|++|++++|.++
T Consensus 2 ~L~~L~l~~n~l~ 14 (61)
T PF13855_consen 2 NLESLDLSNNKLT 14 (61)
T ss_dssp TESEEEETSSTES
T ss_pred cCcEEECCCCCCC
Confidence 4455555555554
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.85 E-value=4.7e-06 Score=69.66 Aligned_cols=107 Identities=18% Similarity=0.231 Sum_probs=55.1
Q ss_pred CccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCCCChHHHHHHHHHHhcCCCCCcEEEccCCCCChHHHHH
Q 007479 382 NLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGSHIAAS 461 (602)
Q Consensus 382 ~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 461 (602)
.+..++|+.|.+.. ++.....+.....|+..+|++|.+.+ ++..+..-...++.|++++|.++ ..|++
T Consensus 28 E~h~ldLssc~lm~------i~davy~l~~~~el~~i~ls~N~fk~-----fp~kft~kf~t~t~lNl~~neis-dvPeE 95 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMY------IADAVYMLSKGYELTKISLSDNGFKK-----FPKKFTIKFPTATTLNLANNEIS-DVPEE 95 (177)
T ss_pred HhhhcccccchhhH------HHHHHHHHhCCceEEEEecccchhhh-----CCHHHhhccchhhhhhcchhhhh-hchHH
Confidence 34456666665542 22111223333556666666666554 34444333223666666666666 44555
Q ss_pred HHHHhcCCccEEEeeccCCChhHHHHHHHHhhcCCCccEEeCcCCC
Q 007479 462 LGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNR 507 (602)
Q Consensus 462 l~~~l~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~ 507 (602)
++.+ +.|+.|+++.|.+. ..++.+..+.++-.|+..+|.
T Consensus 96 ~Aam--~aLr~lNl~~N~l~-----~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 96 LAAM--PALRSLNLRFNPLN-----AEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred Hhhh--HHhhhcccccCccc-----cchHHHHHHHhHHHhcCCCCc
Confidence 6666 66666666666652 223333344455555555555
No 58
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.83 E-value=6.1e-06 Score=60.65 Aligned_cols=58 Identities=34% Similarity=0.497 Sum_probs=26.1
Q ss_pred CccEEEecCCCCChhhHHHHH-HHhccCCCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCC
Q 007479 354 SLRLLNLRGNNLCKADARDLG-SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE 424 (602)
Q Consensus 354 ~L~~L~L~~n~l~~~~~~~l~-~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~ 424 (602)
+|++|++++|.++. ++ ..+.++++|++|++++|.++. ++. ..+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~-----i~~~~f~~l~~L~~L~l~~N~l~~------i~~--~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTE-----IPPDSFSNLPNLETLDLSNNNLTS------IPP--DAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESE-----ECTTTTTTGTTESEEEETSSSESE------EET--TTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCc-----cCHHHHcCCCCCCEeEccCCccCc------cCH--HHHcCCCCCCEEeCcCCc
Confidence 34455555554443 22 233444555555555554443 111 334444555555555544
No 59
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.72 E-value=2.3e-05 Score=88.34 Aligned_cols=109 Identities=28% Similarity=0.322 Sum_probs=65.2
Q ss_pred cCCCccEEEcCCCC--CChhHHHHHHHHHHhcCCCcCEEEccCCCCCCcccccCCCChhhhhhcCCCCCCccEEEecCCC
Q 007479 287 SGRSLCSLKLRHCH--LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNN 364 (602)
Q Consensus 287 ~~~~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~~l~~l~~l~~L~~L~L~~n~ 364 (602)
.++.|+.|=+.+|. +. .++ ..++..++.|+.|||++|.=.+.+| ..++ .+-+|+.|++++..
T Consensus 543 ~~~~L~tLll~~n~~~l~-~is----~~ff~~m~~LrVLDLs~~~~l~~LP--------~~I~---~Li~LryL~L~~t~ 606 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLL-EIS----GEFFRSLPLLRVLDLSGNSSLSKLP--------SSIG---ELVHLRYLDLSDTG 606 (889)
T ss_pred CCCccceEEEeecchhhh-hcC----HHHHhhCcceEEEECCCCCccCcCC--------hHHh---hhhhhhcccccCCC
Confidence 34467777777765 22 111 1223456777888887766555555 4443 45577777777777
Q ss_pred CChhhHHHHHHHhccCCCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCC
Q 007479 365 LCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE 424 (602)
Q Consensus 365 l~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~ 424 (602)
++. +|.++.+++.|.+|++..+.-... +| .....+++|++|.+....
T Consensus 607 I~~-----LP~~l~~Lk~L~~Lnl~~~~~l~~-----~~---~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 607 ISH-----LPSGLGNLKKLIYLNLEVTGRLES-----IP---GILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccc-----cchHHHHHHhhheecccccccccc-----cc---chhhhcccccEEEeeccc
Confidence 775 777777777777887777643221 22 222334677777775544
No 60
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=97.67 E-value=1.5e-05 Score=79.78 Aligned_cols=306 Identities=16% Similarity=0.060 Sum_probs=169.6
Q ss_pred CCccEEEccCCCCChhHHHHHHHHhhcccccCCceeEEEecCCCCccCCcchHHHHHHHHhhcCCCccEEEcCCCCCChh
Q 007479 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (602)
Q Consensus 225 ~~L~~L~L~~~~~~~~~~~~l~~~L~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 304 (602)
+.+++++++.|.+.+..+..+.. + .--++++.|.+++...+.++. -..-..+.+++|+.|...+.
T Consensus 165 pr~r~~dls~npi~dkvpihl~~----p------~~pl~lr~c~lsskfis~l~~-----qsg~~~lteldls~n~~Kdd 229 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQ----P------GNPLSLRVCELSSKFISKLLI-----QSGRLWLTELDLSTNGGKDD 229 (553)
T ss_pred chhhhhccCCCcccccCCccccC----C------CCccchhhhhhhhhHHHHhhh-----hhccccccccccccCCCCcc
Confidence 45667777777776665554432 1 111556666665522222110 02224678888888888777
Q ss_pred HHHHHHHHHHhcCCCcCEEEccCCCCCCcccccCCCChhhhhhcCCCCCCccEEEecCCCCChhhHHHH----HHHhccC
Q 007479 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDL----GSALVHI 380 (602)
Q Consensus 305 ~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~l----~~~l~~l 380 (602)
++..+.. ......++.++.+.-.+.-.. +...+ ...+-+++++.+++.|..+..-.+.+ -+.+..-
T Consensus 230 ip~~~n~--~a~~~vl~~ld~s~tgirlD~-------l~~~l-~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~ 299 (553)
T KOG4242|consen 230 IPRTLNK--KAGTLVLFKLDRSTTGIRLDL-------LTSPL-AAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPD 299 (553)
T ss_pred chhHHHH--hhhhhhhhcccccccccchhh-------ccccc-ccccccccchhhhccCCCCcccccccccccccccCcC
Confidence 7766533 223345677777766554210 00111 11234566777777665443211112 2223334
Q ss_pred CCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCc--cEEEcccCCCChHHHHHHHHHHhcCCCCCcEEEccCCCCChHH
Q 007479 381 PNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL--VELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGSHI 458 (602)
Q Consensus 381 ~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L--~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 458 (602)
+++ +|++..+..-++....++ -.+..+... -++++..|...+..+ ..+...-. .+++|+...|.+.+++
T Consensus 300 ~sg-hln~~~~~~psE~lks~L----Lgla~ne~t~g~rldl~~cp~~~a~v---leaci~g~-R~q~l~~rdnnldgeg 370 (553)
T KOG4242|consen 300 PSG-HLNSRPRYTPSEKLKSML----LGLAENEATLGARLDLRRCPLERAEV---LEACIFGQ-RVQVLLQRDNNLDGEG 370 (553)
T ss_pred ccc-ccccccccCchhhhhhhh----cccccccccccccCChhhccccccch---hhccccce-eeeEeecccccccccc
Confidence 466 777777776666544443 222222222 245666666554321 12222212 3788888888887766
Q ss_pred HHHHHHHhcCCccEEEeeccCC---ChhHHHHHHHHhhcC--CCccEEeCcCCCCChHHHHHHHHhCccCCCccEEEccC
Q 007479 459 AASLGKFFGTSVQVLNIGAIGL---GSSGFRVLQDGVTKE--LKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGY 533 (602)
Q Consensus 459 ~~~l~~~l~~~L~~L~L~~n~l---~~~~~~~l~~~l~~~--~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 533 (602)
..........+.+.+++..-.- ...+.......+... .-+..+.++.|+++.... .+...+...+++..|++++
T Consensus 371 ~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~-s~in~l~stqtl~kldisg 449 (553)
T KOG4242|consen 371 GAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLE-SAINKLLSTQTLAKLDISG 449 (553)
T ss_pred ccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHH-HHHHhhccCcccccccccC
Confidence 5555322226677777765432 222222222222222 248888888888775543 3344466788899999999
Q ss_pred CCCCHHHHHHHHHHHhhcCCCccEEEecCCCCC
Q 007479 534 NLMPLESLTIICSALKVAKGHLQRLDLTGNNWE 566 (602)
Q Consensus 534 n~l~~~~~~~l~~~l~~~~~~L~~L~L~~N~l~ 566 (602)
|..++.+...+..+++.++ .++.+..+.|..+
T Consensus 450 n~mgd~gap~lpkalq~n~-rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 450 NGMGDGGAPPLPKALQSNC-RLRPIPDSLNLPE 481 (553)
T ss_pred CCcccCCCCcCccccCCCC-ccCCCCCCCCCcc
Confidence 9988888888888877777 7888888888775
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.58 E-value=4.8e-05 Score=63.76 Aligned_cols=106 Identities=18% Similarity=0.179 Sum_probs=71.3
Q ss_pred CcEEEccCCCCChHHHHHHHHHhc-CCccEEEeeccCCChhHHHHHHHHhhc-CCCccEEeCcCCCCChHHHHHHHHhCc
Q 007479 444 PTSLSIADNNLGSHIAASLGKFFG-TSVQVLNIGAIGLGSSGFRVLQDGVTK-ELKLVNINISKNRGGVETAKFLSKLMP 521 (602)
Q Consensus 444 L~~L~Ls~n~l~~~~~~~l~~~l~-~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 521 (602)
+..+||+.|++. -++........ ..|+..+|++|.+.+ ++..+.. .+.++.||+++|+|.+...+ ++
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-----fp~kft~kf~t~t~lNl~~neisdvPeE-~A---- 97 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-----FPKKFTIKFPTATTLNLANNEISDVPEE-LA---- 97 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-----CCHHHhhccchhhhhhcchhhhhhchHH-Hh----
Confidence 678888888775 33333333311 567788888888743 3333333 34788999999998776654 44
Q ss_pred cCCCccEEEccCCCCCHHHHHHHHHHHhhcCCCccEEEecCCCCC
Q 007479 522 LAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWE 566 (602)
Q Consensus 522 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~N~l~ 566 (602)
.+|.|+.|+++.|.+.... +.++.. .++..||.-+|.+.
T Consensus 98 am~aLr~lNl~~N~l~~~p-~vi~~L-----~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 98 AMPALRSLNLRFNPLNAEP-RVIAPL-----IKLDMLDSPENARA 136 (177)
T ss_pred hhHHhhhcccccCccccch-HHHHHH-----HhHHHhcCCCCccc
Confidence 3888999999999886433 555553 46888888888764
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.55 E-value=5.2e-05 Score=76.88 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=8.3
Q ss_pred hcCCCccEEEccCCC
Q 007479 222 QNSETLASLEFLHCK 236 (602)
Q Consensus 222 ~~l~~L~~L~L~~~~ 236 (602)
..+.+++.|++++|.
T Consensus 49 ~~~~~l~~L~Is~c~ 63 (426)
T PRK15386 49 EEARASGRLYIKDCD 63 (426)
T ss_pred HHhcCCCEEEeCCCC
Confidence 344556666666553
No 63
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.52 E-value=0.00012 Score=49.42 Aligned_cols=37 Identities=41% Similarity=0.672 Sum_probs=19.4
Q ss_pred CccEEEecCCCCChhhHHHHHHHhccCCCccEEEecCCCCCh
Q 007479 354 SLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 395 (602)
Q Consensus 354 ~L~~L~L~~n~l~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~ 395 (602)
+|++|++++|+|++ ++..+.++++|+.|++++|.+++
T Consensus 2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCCC
Confidence 45555555555554 44445555555555555555554
No 64
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.34 E-value=0.00028 Score=47.59 Aligned_cols=38 Identities=39% Similarity=0.502 Sum_probs=28.4
Q ss_pred CCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCCCCh
Q 007479 381 PNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 427 (602)
Q Consensus 381 ~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~ 427 (602)
++|++|++++|.|++ +| ..++.+++|+.|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~~------l~---~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITD------LP---PELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SS------HG---GHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcc------cC---chHhCCCCCCEEEecCCCCCC
Confidence 468888888888887 65 347778888888888888876
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.21 E-value=0.00017 Score=64.76 Aligned_cols=83 Identities=16% Similarity=0.218 Sum_probs=38.1
Q ss_pred CccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCCCChHHHHHHHHHHhcCCCCCcEEEccCCCCChHH-HH
Q 007479 382 NLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGSHI-AA 460 (602)
Q Consensus 382 ~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~-~~ 460 (602)
+...+||++|.+.. + ..+..+..|..|.+++|.|+.. ...+.....+|..|.+.+|+|..-+ ..
T Consensus 43 ~~d~iDLtdNdl~~------l----~~lp~l~rL~tLll~nNrIt~I-----~p~L~~~~p~l~~L~LtnNsi~~l~dl~ 107 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK------L----DNLPHLPRLHTLLLNNNRITRI-----DPDLDTFLPNLKTLILTNNSIQELGDLD 107 (233)
T ss_pred ccceecccccchhh------c----ccCCCccccceEEecCCcceee-----ccchhhhccccceEEecCcchhhhhhcc
Confidence 45556666665554 2 3344445566666666665552 2222222223555555555543211 11
Q ss_pred HHHHHhcCCccEEEeeccCCC
Q 007479 461 SLGKFFGTSVQVLNIGAIGLG 481 (602)
Q Consensus 461 ~l~~~l~~~L~~L~L~~n~l~ 481 (602)
-++.+ +.|++|.+-+|.++
T Consensus 108 pLa~~--p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 108 PLASC--PKLEYLTLLGNPVE 126 (233)
T ss_pred hhccC--CccceeeecCCchh
Confidence 22222 45555555555543
No 66
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.16 E-value=0.00021 Score=64.07 Aligned_cols=114 Identities=17% Similarity=0.169 Sum_probs=82.8
Q ss_pred CCccEEEcccCCCChHHHHHHHHHHhcCCCCCcEEEccCCCCChHHHHHHHHHhcCCccEEEeeccCCChhHHHHHHHHh
Q 007479 413 NPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGV 492 (602)
Q Consensus 413 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~L~~L~L~~n~l~~~~~~~l~~~l 492 (602)
.+...++|++|.+.. ...+..+.. |..|.+++|+|++..+. +..++ ++|+.|.|.+|.|...|- ...+
T Consensus 42 d~~d~iDLtdNdl~~------l~~lp~l~r-L~tLll~nNrIt~I~p~-L~~~~-p~l~~L~LtnNsi~~l~d---l~pL 109 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK------LDNLPHLPR-LHTLLLNNNRITRIDPD-LDTFL-PNLKTLILTNNSIQELGD---LDPL 109 (233)
T ss_pred cccceecccccchhh------cccCCCccc-cceEEecCCcceeeccc-hhhhc-cccceEEecCcchhhhhh---cchh
Confidence 577889999999876 245666664 99999999999965544 55543 889999999999855431 1234
Q ss_pred hcCCCccEEeCcCCCCChHHHHHHHHhCccCCCccEEEccCCCCCHH
Q 007479 493 TKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLE 539 (602)
Q Consensus 493 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 539 (602)
..+++|++|.+-+|.+....- +=.-++...|+|+.||++.-.-.+.
T Consensus 110 a~~p~L~~Ltll~Npv~~k~~-YR~yvl~klp~l~~LDF~kVt~~ER 155 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPVEHKKN-YRLYVLYKLPSLRTLDFQKVTRKER 155 (233)
T ss_pred ccCCccceeeecCCchhcccC-ceeEEEEecCcceEeehhhhhHHHH
Confidence 568899999999998765442 2223467799999999887664433
No 67
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.16 E-value=0.00073 Score=68.68 Aligned_cols=138 Identities=14% Similarity=0.213 Sum_probs=69.0
Q ss_pred hhcCCCccEEEcCCCCCChhHHHHHHHHHHhcCCCcCEEEccCCCCCCcccccCCCChhhhhhcCCCCCCccEEEecCC-
Q 007479 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN- 363 (602)
Q Consensus 285 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~~l~~l~~l~~L~~L~L~~n- 363 (602)
+..+.++++|++++|.++. .|. + -.+|++|.+++|.--..+| ..++ .+|+.|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP~-L-------P~sLtsL~Lsnc~nLtsLP--------~~LP-----~nLe~L~Ls~Cs 105 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LPV-L-------PNELTEITIENCNNLTTLP--------GSIP-----EGLEKLTVCHCP 105 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cCC-C-------CCCCcEEEccCCCCcccCC--------chhh-----hhhhheEccCcc
Confidence 4556777778877776663 331 1 2467777777764333222 2222 36777777776
Q ss_pred CCChhhHHHHHHHhccCCCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCC-CChHHHHHHHHHHhcCCC
Q 007479 364 NLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE-LSGRGVSQLLDTLSTLRR 442 (602)
Q Consensus 364 ~l~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~ 442 (602)
.+.. +| .+|+.|+++.+....- .. +| .+|+.|.+.++. .... .++. .++.
T Consensus 106 ~L~s-----LP------~sLe~L~L~~n~~~~L--~~-LP---------ssLk~L~I~~~n~~~~~---~lp~---~LPs 156 (426)
T PRK15386 106 EISG-----LP------ESVRSLEIKGSATDSI--KN-VP---------NGLTSLSINSYNPENQA---RIDN---LISP 156 (426)
T ss_pred cccc-----cc------cccceEEeCCCCCccc--cc-Cc---------chHhheecccccccccc---cccc---ccCC
Confidence 4432 32 2466666665544320 00 22 355666664322 1110 0111 1223
Q ss_pred CCcEEEccCCCCChHHHHHHHHHhcCCccEEEeecc
Q 007479 443 PPTSLSIADNNLGSHIAASLGKFFGTSVQVLNIGAI 478 (602)
Q Consensus 443 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~L~~L~L~~n 478 (602)
+|++|++++|... ..+ ..+..+|+.|+++.+
T Consensus 157 SLk~L~Is~c~~i-~LP----~~LP~SLk~L~ls~n 187 (426)
T PRK15386 157 SLKTLSLTGCSNI-ILP----EKLPESLQSITLHIE 187 (426)
T ss_pred cccEEEecCCCcc-cCc----ccccccCcEEEeccc
Confidence 5777777766643 111 112356777777655
No 68
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.00071 Score=60.86 Aligned_cols=83 Identities=14% Similarity=0.169 Sum_probs=57.4
Q ss_pred CccEEEeeccCCChhHHHHHHHHhhcCCCccEEeCcCCC-CChHHHHHHHHhCccCCCccEEEccCCC-CCHHHHHHHHH
Q 007479 469 SVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNR-GGVETAKFLSKLMPLAPELVEVNAGYNL-MPLESLTIICS 546 (602)
Q Consensus 469 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~ 546 (602)
.++.+|-+++.|..+|++.+. .++.++.|.+.+|. ++|.+.+.+.. -.++|+.|++++|. |++.|+..+..
T Consensus 102 ~IeaVDAsds~I~~eGle~L~----~l~~i~~l~l~~ck~~dD~~L~~l~~---~~~~L~~L~lsgC~rIT~~GL~~L~~ 174 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLR----DLRSIKSLSLANCKYFDDWCLERLGG---LAPSLQDLDLSGCPRITDGGLACLLK 174 (221)
T ss_pred eEEEEecCCchHHHHHHHHHh----ccchhhhheeccccchhhHHHHHhcc---cccchheeeccCCCeechhHHHHHHH
Confidence 466777777777777755543 56667777777776 66666666655 36778888888775 88888777766
Q ss_pred HHhhcCCCccEEEecCC
Q 007479 547 ALKVAKGHLQRLDLTGN 563 (602)
Q Consensus 547 ~l~~~~~~L~~L~L~~N 563 (602)
. ++|+.|.+.+=
T Consensus 175 l-----knLr~L~l~~l 186 (221)
T KOG3864|consen 175 L-----KNLRRLHLYDL 186 (221)
T ss_pred h-----hhhHHHHhcCc
Confidence 5 67888777543
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.00017 Score=67.77 Aligned_cols=105 Identities=25% Similarity=0.210 Sum_probs=52.4
Q ss_pred CCceeEEEecCCCCccCCcchHHHHHHHHhhcCCCccEEEcCCCCCChhHHHHHHHHHHhcCCCcCEEEccCCCCCCccc
Q 007479 256 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 335 (602)
Q Consensus 256 ~~~L~~L~l~~~~l~~~~~~~l~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~ 335 (602)
+.+.++|++-+|.+++ ++- ...++.|+.|.||-|.|+...+ +..|++|++|+|..|.|.+.
T Consensus 18 l~~vkKLNcwg~~L~D-----Isi-----c~kMp~lEVLsLSvNkIssL~p-------l~rCtrLkElYLRkN~I~sl-- 78 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD-----ISI-----CEKMPLLEVLSLSVNKISSLAP-------LQRCTRLKELYLRKNCIESL-- 78 (388)
T ss_pred HHHhhhhcccCCCccH-----HHH-----HHhcccceeEEeeccccccchh-------HHHHHHHHHHHHHhcccccH--
Confidence 3445666666666554 111 1445566666666666654322 12355666666666665541
Q ss_pred ccCCCChhhhhhcCCCCCCccEEEecCCCCChhh-HHHHHHHhccCCCccEEE
Q 007479 336 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKAD-ARDLGSALVHIPNLEILD 387 (602)
Q Consensus 336 ~~~~~~l~~~l~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~~l~~l~~L~~L~ 387 (602)
..+..+.++++|+.|+|..|.-..++ -..-...+..+++|+.||
T Consensus 79 --------dEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 79 --------DELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred --------HHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 33344445566666666665544322 122223344555555553
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=0.00032 Score=65.96 Aligned_cols=106 Identities=24% Similarity=0.203 Sum_probs=67.1
Q ss_pred CCCccEEEcCCCCCChhHHHHHHHHHHhcCCCcCEEEccCCCCCCcccccCCCChhhhhhcCCCCCCccEEEecCCCCCh
Q 007479 288 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCK 367 (602)
Q Consensus 288 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~~l~~l~~l~~L~~L~L~~n~l~~ 367 (602)
+.+.+.|+..|+.+++.. + ...|+.|+.|.|+-|.|+. +..+.+|+.|++|.|..|.|.+
T Consensus 18 l~~vkKLNcwg~~L~DIs---i----c~kMp~lEVLsLSvNkIss-------------L~pl~rCtrLkElYLRkN~I~s 77 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS---I----CEKMPLLEVLSLSVNKISS-------------LAPLQRCTRLKELYLRKNCIES 77 (388)
T ss_pred HHHhhhhcccCCCccHHH---H----HHhcccceeEEeecccccc-------------chhHHHHHHHHHHHHHhccccc
Confidence 456777888888877532 2 3447888888888888754 3334577888888888888776
Q ss_pred hhHHHHHHHhccCCCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEE
Q 007479 368 ADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELY 419 (602)
Q Consensus 368 ~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~ 419 (602)
-. =...+.++++|+.|.|..|.-..++....-- ..+..+++|+.|+
T Consensus 78 ld---EL~YLknlpsLr~LWL~ENPCc~~ag~nYR~---~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 78 LD---ELEYLKNLPSLRTLWLDENPCCGEAGQNYRR---KVLRVLPNLKKLD 123 (388)
T ss_pred HH---HHHHHhcCchhhhHhhccCCcccccchhHHH---HHHHHcccchhcc
Confidence 31 2345677888888888887655443222111 2334446777664
No 71
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=96.55 E-value=0.0037 Score=37.42 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=14.2
Q ss_pred CCccEEEccCCCCCHHHHHHHHHHH
Q 007479 524 PELVEVNAGYNLMPLESLTIICSAL 548 (602)
Q Consensus 524 ~~L~~L~Ls~n~l~~~~~~~l~~~l 548 (602)
++|++|+|++|.|++.|+..+++++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHh
Confidence 4555555555555555555555554
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.0016 Score=58.63 Aligned_cols=82 Identities=12% Similarity=0.029 Sum_probs=54.5
Q ss_pred CcEEEccCCCCChHHHHHHHHHhcCCccEEEeecc-CCChhHHHHHHHHhhcCCCccEEeCcCCC-CChHHHHHHHHhCc
Q 007479 444 PTSLSIADNNLGSHIAASLGKFFGTSVQVLNIGAI-GLGSSGFRVLQDGVTKELKLVNINISKNR-GGVETAKFLSKLMP 521 (602)
Q Consensus 444 L~~L~Ls~n~l~~~~~~~l~~~l~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~ 521 (602)
++.+|-++..|..++.+.+..+ +.++.|.+.+| .+.+.|++.+.+ -.++|+.|+|++|. |++.|...|..
T Consensus 103 IeaVDAsds~I~~eGle~L~~l--~~i~~l~l~~ck~~dD~~L~~l~~---~~~~L~~L~lsgC~rIT~~GL~~L~~--- 174 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDL--RSIKSLSLANCKYFDDWCLERLGG---LAPSLQDLDLSGCPRITDGGLACLLK--- 174 (221)
T ss_pred EEEEecCCchHHHHHHHHHhcc--chhhhheeccccchhhHHHHHhcc---cccchheeeccCCCeechhHHHHHHH---
Confidence 6677777777776777777666 77777777777 456666666655 23467777777776 77777655544
Q ss_pred cCCCccEEEccCC
Q 007479 522 LAPELVEVNAGYN 534 (602)
Q Consensus 522 ~~~~L~~L~Ls~n 534 (602)
.++|+.|.+.+=
T Consensus 175 -lknLr~L~l~~l 186 (221)
T KOG3864|consen 175 -LKNLRRLHLYDL 186 (221)
T ss_pred -hhhhHHHHhcCc
Confidence 666766666543
No 73
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=96.35 E-value=0.0056 Score=36.64 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=16.4
Q ss_pred CCccEEeCcCCCCChHHHHHHHHhC
Q 007479 496 LKLVNINISKNRGGVETAKFLSKLM 520 (602)
Q Consensus 496 ~~L~~L~Ls~N~l~~~~~~~l~~~l 520 (602)
++|++|||++|.+++.|+..+++++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHh
Confidence 4566777777777777766666543
No 74
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=96.25 E-value=0.0074 Score=61.13 Aligned_cols=317 Identities=15% Similarity=0.069 Sum_probs=202.1
Q ss_pred cCCccEEEeccccchHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHhhcccccCCceeEEEecCCCCccCCcc
Q 007479 196 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (602)
Q Consensus 196 ~~~L~~L~Ls~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~L~~~~~~~~~L~~L~l~~~~l~~~~~~ 275 (602)
-+.+++++++.|.+....... +.. .---+.+..|..+..+...++.. + --..+.+++++.|...+
T Consensus 164 npr~r~~dls~npi~dkvpih----l~~--p~~pl~lr~c~lsskfis~l~~q--s---g~~~lteldls~n~~Kd---- 228 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIH----LPQ--PGNPLSLRVCELSSKFISKLLIQ--S---GRLWLTELDLSTNGGKD---- 228 (553)
T ss_pred cchhhhhccCCCcccccCCcc----ccC--CCCccchhhhhhhhhHHHHhhhh--h---ccccccccccccCCCCc----
Confidence 456788899988654433211 111 11127788888888887776521 1 13347778888887665
Q ss_pred hHHHHHHHHhhcCCCccEEEcCCCCCChhHHHHHHHHHHhcCCCcCEEEccCCCCCC----cccccCCCChhhhhhcCCC
Q 007479 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG----WLSKYDRSGPLFSLGAGKS 351 (602)
Q Consensus 276 ~l~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~----~~~~~~~~~l~~~l~~l~~ 351 (602)
.++.. ........-+++++.+...+.-+. .....+....+.++..+++.|.... +++.. .=..++.
T Consensus 229 dip~~-~n~~a~~~vl~~ld~s~tgirlD~--l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~-------~k~~fS~ 298 (553)
T KOG4242|consen 229 DIPRT-LNKKAGTLVLFKLDRSTTGIRLDL--LTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGA-------EKDTFSP 298 (553)
T ss_pred cchhH-HHHhhhhhhhhcccccccccchhh--cccccccccccccchhhhccCCCCcccccccccc-------cccccCc
Confidence 34432 222234456888888887655211 1112223445688888999887542 11110 0112233
Q ss_pred CCCccEEEecCCCCChhhHHHHHHHhccCCCcc--EEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCCCChHH
Q 007479 352 LQSLRLLNLRGNNLCKADARDLGSALVHIPNLE--ILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG 429 (602)
Q Consensus 352 l~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~L~--~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~ 429 (602)
-.++ +|++.++...++.++.+.-.++...... .+|+..|...+..+ . .+-..-..++.|..+.|.+.+.+
T Consensus 299 ~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~v---l----eaci~g~R~q~l~~rdnnldgeg 370 (553)
T KOG4242|consen 299 DPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEV---L----EACIFGQRVQVLLQRDNNLDGEG 370 (553)
T ss_pred Cccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccch---h----hccccceeeeEeecccccccccc
Confidence 4567 8999999999988777766555554333 56777777765322 1 11122246999999999988765
Q ss_pred HHHHHHHHhcCCCCCcEEEccCCC---CCh--HHHHHHHHHhc--CCccEEEeeccCCChhHHHHHHHHhhcCCCccEEe
Q 007479 430 VSQLLDTLSTLRRPPTSLSIADNN---LGS--HIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNIN 502 (602)
Q Consensus 430 ~~~l~~~l~~~~~~L~~L~Ls~n~---l~~--~~~~~l~~~l~--~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 502 (602)
.... .+.+. ...+.+++..-. +.+ .......+.-. .-+..+.++.|.+.. +...+...+...+++.+|+
T Consensus 371 ~~vg--k~~~s-~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka-~l~s~in~l~stqtl~kld 446 (553)
T KOG4242|consen 371 GAVG--KRKQS-KSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKA-GLESAINKLLSTQTLAKLD 446 (553)
T ss_pred cccc--ceeec-cccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccc-cHHHHHHhhccCccccccc
Confidence 5444 33332 358888887642 221 22222222211 348899999998754 3466677777788999999
Q ss_pred CcCCCCChHHHHHHHHhCccCCCccEEEccCCCCCHHHHHHHHHHHh
Q 007479 503 ISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALK 549 (602)
Q Consensus 503 Ls~N~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 549 (602)
+++|..++.++..+++++..+..+..+..+.|.+++.++..+.....
T Consensus 447 isgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~~~gl~p~~~~~p 493 (553)
T KOG4242|consen 447 ISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPEDPGLGPRNEERP 493 (553)
T ss_pred ccCCCcccCCCCcCccccCCCCccCCCCCCCCCccccccchhhhhcc
Confidence 99999999999999999999999999999999999888777766544
No 75
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.18 E-value=0.0018 Score=60.69 Aligned_cols=86 Identities=24% Similarity=0.288 Sum_probs=47.7
Q ss_pred CCceeEEEecCCCCccCCcchHHHHHHHHhhcCCCccEEEcCCC--CCChhHHHHHHHHHHhcCCCcCEEEccCCCCCCc
Q 007479 256 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC--HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 333 (602)
Q Consensus 256 ~~~L~~L~l~~~~l~~~~~~~l~~~l~~~l~~~~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~ 333 (602)
...|+.|++.++.++. ...++.+++|+.|.+|.| ++.+.... +...+++|++|++++|.|..
T Consensus 42 ~~~le~ls~~n~gltt----------~~~~P~Lp~LkkL~lsdn~~~~~~~l~v-----l~e~~P~l~~l~ls~Nki~~- 105 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT----------LTNFPKLPKLKKLELSDNYRRVSGGLEV-----LAEKAPNLKVLNLSGNKIKD- 105 (260)
T ss_pred ccchhhhhhhccceee----------cccCCCcchhhhhcccCCccccccccee-----hhhhCCceeEEeecCCcccc-
Confidence 3446666666666654 122456677788888777 43332221 12335777777777777654
Q ss_pred ccccCCCChhhhhhcCCCCCCccEEEecCCCCC
Q 007479 334 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLC 366 (602)
Q Consensus 334 ~~~~~~~~l~~~l~~l~~l~~L~~L~L~~n~l~ 366 (602)
+ ..+..+..+.+|.+|++.+|..+
T Consensus 106 -l--------stl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 106 -L--------STLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred -c--------cccchhhhhcchhhhhcccCCcc
Confidence 1 33333444555666666665444
No 76
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.92 E-value=0.0024 Score=59.97 Aligned_cols=88 Identities=26% Similarity=0.362 Sum_probs=48.3
Q ss_pred CCcCEEEccCCCCCCcccccCCCChhhhhhcCCCCCCccEEEecCCCCChhhHHHHHHHhccCCCccEEEecCCCCChhh
Q 007479 318 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDG 397 (602)
Q Consensus 318 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g 397 (602)
..|+.|.+.+++++. +..+..+++|+.|.++.|.....+ .+.......++|+++++++|+|.+
T Consensus 43 ~~le~ls~~n~gltt-------------~~~~P~Lp~LkkL~lsdn~~~~~~--~l~vl~e~~P~l~~l~ls~Nki~~-- 105 (260)
T KOG2739|consen 43 VELELLSVINVGLTT-------------LTNFPKLPKLKKLELSDNYRRVSG--GLEVLAEKAPNLKVLNLSGNKIKD-- 105 (260)
T ss_pred cchhhhhhhccceee-------------cccCCCcchhhhhcccCCcccccc--cceehhhhCCceeEEeecCCcccc--
Confidence 455555566665543 223335667777777777322211 122223444777777777777765
Q ss_pred HHhHHHHHHHhhcCCCCccEEEcccCCCCh
Q 007479 398 IRSLIPYFVQASERCNPLVELYLENCELSG 427 (602)
Q Consensus 398 ~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~ 427 (602)
+..+ ..+..+.+|..|++.+|..+.
T Consensus 106 lstl-----~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 106 LSTL-----RPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred cccc-----chhhhhcchhhhhcccCCccc
Confidence 2222 234444667777777776443
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.85 E-value=0.0058 Score=35.06 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=11.5
Q ss_pred CCccEEEccCCCCCHHHHHHHH
Q 007479 524 PELVEVNAGYNLMPLESLTIIC 545 (602)
Q Consensus 524 ~~L~~L~Ls~n~l~~~~~~~l~ 545 (602)
++|++|+|++|.|++++++.++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 4555666666666666555554
No 78
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=95.75 E-value=0.022 Score=55.38 Aligned_cols=92 Identities=14% Similarity=0.236 Sum_probs=76.1
Q ss_pred CCccEEEeecc-CCChhHHHHHHHHhhcCCCccEEeCcCCCCChHHHHHHHHhCccCCCccEEEccCCCCCHHHHHHHHH
Q 007479 468 TSVQVLNIGAI-GLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICS 546 (602)
Q Consensus 468 ~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 546 (602)
+.++..++.++ .|...-...+..++..+...+...+.+.+.++.-+.+++..+..+++|++|++++|.|++.|+-.+..
T Consensus 198 ~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~~ 277 (353)
T KOG3735|consen 198 TGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALLR 277 (353)
T ss_pred CCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHHH
Confidence 66788888776 46666667788888888888888888888888888888888888999999999999999999988888
Q ss_pred HHhhcCCCccEEEe
Q 007479 547 ALKVAKGHLQRLDL 560 (602)
Q Consensus 547 ~l~~~~~~L~~L~L 560 (602)
+++.+. +|..+..
T Consensus 278 al~~n~-tl~el~~ 290 (353)
T KOG3735|consen 278 ALQSNK-SLTELKN 290 (353)
T ss_pred HHhccc-hhhHhhh
Confidence 888877 6776654
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.15 E-value=0.014 Score=33.45 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=11.5
Q ss_pred CCccEEeCcCCCCChHHHHHHH
Q 007479 496 LKLVNINISKNRGGVETAKFLS 517 (602)
Q Consensus 496 ~~L~~L~Ls~N~l~~~~~~~l~ 517 (602)
++|++|+|++|++++.++..++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 4556666666666666555543
No 80
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=93.04 E-value=0.43 Score=46.71 Aligned_cols=119 Identities=15% Similarity=0.187 Sum_probs=76.5
Q ss_pred CCccEEEcccCC-CChHHHHHHHHHHhcCCCCCcEEEccCCCCChHHHHHHHHHhc--CCccEEEeeccCCChhHHHHHH
Q 007479 413 NPLVELYLENCE-LSGRGVSQLLDTLSTLRRPPTSLSIADNNLGSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQ 489 (602)
Q Consensus 413 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~--~~L~~L~L~~n~l~~~~~~~l~ 489 (602)
+.++..+++++. +.......+..++.... ..+.+.+.+-+.++..+-.++.++. ..|++|++.+|.||..|+-.+.
T Consensus 198 ~~l~evnlnn~~~ip~e~lk~~~eal~~nt-~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~ 276 (353)
T KOG3735|consen 198 TGLTEVNLNNIRRIPIETLKQFSEALKNNT-HVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALL 276 (353)
T ss_pred CCceeeeccccccCCHHHHHHHHHHHhcCc-hhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHH
Confidence 677888887765 55555566666776643 5777777777777777777776664 5678888888888888887777
Q ss_pred HHhhcCCCccEEeCcCCC--CChHHHHHHHHhCccCCCccEEEcc
Q 007479 490 DGVTKELKLVNINISKNR--GGVETAKFLSKLMPLAPELVEVNAG 532 (602)
Q Consensus 490 ~~l~~~~~L~~L~Ls~N~--l~~~~~~~l~~~l~~~~~L~~L~Ls 532 (602)
.++..+.+|.++-+.+-+ +|....--++..+..+.+|-.....
T Consensus 277 ~al~~n~tl~el~~dnqrq~lg~~vemeia~~leen~sllk~gy~ 321 (353)
T KOG3735|consen 277 RALQSNKSLTELKNDNQRQVLGNAVEMEIALELEENASLLKFGYH 321 (353)
T ss_pred HHHhccchhhHhhhhhHHhhcccHHHHHHHHHHHhcccccccccc
Confidence 777777777776654332 3333333333334444444444433
No 81
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=91.49 E-value=0.22 Score=29.01 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=13.1
Q ss_pred CCCccEEEccCCC-CCHHHHHHHH
Q 007479 523 APELVEVNAGYNL-MPLESLTIIC 545 (602)
Q Consensus 523 ~~~L~~L~Ls~n~-l~~~~~~~l~ 545 (602)
+++|++|++++|. |+|.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 3556666666654 6666655554
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=88.42 E-value=0.62 Score=27.10 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=13.0
Q ss_pred CCccEEeCcCCC-CChHHHHHHH
Q 007479 496 LKLVNINISKNR-GGVETAKFLS 517 (602)
Q Consensus 496 ~~L~~L~Ls~N~-l~~~~~~~l~ 517 (602)
++|++|+|++|. ++|.+...++
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHHh
Confidence 456666666665 6666655443
No 83
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=83.83 E-value=0.79 Score=23.67 Aligned_cols=12 Identities=42% Similarity=0.681 Sum_probs=4.6
Q ss_pred CccEEEecCCCC
Q 007479 554 HLQRLDLTGNNW 565 (602)
Q Consensus 554 ~L~~L~L~~N~l 565 (602)
+|+.|+|++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 345555555544
No 84
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=81.90 E-value=0.23 Score=27.62 Aligned_cols=12 Identities=58% Similarity=0.872 Sum_probs=6.6
Q ss_pred cCEEEccCCCCC
Q 007479 320 LSILDLSGNSIG 331 (602)
Q Consensus 320 L~~L~Ls~n~i~ 331 (602)
|++|||++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 455555555554
No 85
>PF07525 SOCS_box: SOCS box; InterPro: IPR001496 The SOCS box was first identified in SH2-domain-containing proteins of the suppressor of cytokines signalling (SOCS) family [] but was later also found in: the WSB (WD-40-repeat-containing proteins with a SOCS box) family, the SSB (SPRY domain-containing proteins with a SOCS box) family, the ASB (ankyrin-repeat-containing proteins with a SOCS box) family, and ras and ras-like GTPases []. The SOCS box found in these proteins is an about 50 amino acid carboxy-terminal domain composed of two blocks of well-conserved residues separated by between 2 and 10 non-conserved residues []. The C-terminal conserved region is an L/P-rich sequence of unknown function, whereas the N-terminal conserved region is a consensus BC box [], which binds to the Elongin BC complex [, ]. It has been proposed that this association could couple bound proteins to the ubiquitination or proteasomal compartments [].; GO: 0035556 intracellular signal transduction; PDB: 2XAI_A 2JZ3_A 2C9W_A 2FNJ_A 2IZV_A.
Probab=81.66 E-value=1.2 Score=29.07 Aligned_cols=18 Identities=44% Similarity=0.565 Sum_probs=12.8
Q ss_pred CccHHHHHHHHHHHHHcc
Q 007479 4 APSLISLAALAVKRELLL 21 (602)
Q Consensus 4 ~p~l~~l~~~~~~~~l~~ 21 (602)
||||++||-.+|.+++-.
T Consensus 1 p~sLq~LCR~~Ir~~l~~ 18 (40)
T PF07525_consen 1 PPSLQHLCRLAIRRSLGK 18 (40)
T ss_dssp ---HHHHHHHHHHHHSSC
T ss_pred CccHHHHHHHHHHHHhCh
Confidence 799999999999988643
No 86
>cd03716 SOCS_ASB_like SOCS (suppressors of cytokine signaling) box of ASB (ankyrin repeat and SOCS box) and SSB (SPRY domain-containing SOCS box proteins) protein families. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence of a variable number of repeats. SSB proteins contain a central SPRY domain and a C-terminal SOCS. Recently, it has been shown that all four SSB proteins interact with the MET, the receptor protein-tyrosine kinase for hepatocyte growth factor (HGF), and that SSB-1, SSB-2, and SSB-4 interact with prostate apoptosis response protein-4. Both types of interactions are mediated through the SPRY domain.
Probab=80.64 E-value=2.9 Score=27.63 Aligned_cols=34 Identities=32% Similarity=0.320 Sum_probs=23.1
Q ss_pred CCCccHHHHHHHHHHHHHccCCC-CccccccCchHH
Q 007479 2 VKAPSLISLAALAVKRELLLGDD-VIPYVYELPADL 36 (602)
Q Consensus 2 ~~~p~l~~l~~~~~~~~l~~~~~-~~~~l~~lp~~l 36 (602)
+.||||++||-.+|.+++-.+.. .|..| .||..+
T Consensus 1 ~~P~sLq~LCR~~Ir~~lg~~~~~~i~~L-plP~~L 35 (42)
T cd03716 1 STPRSLQHLCRLAIRRCLGRRRLELIKKL-PLPPRL 35 (42)
T ss_pred CCCCCHHHHHHHHHHHHhCccccccCccC-CCCHHH
Confidence 36899999999999988754433 44443 444444
No 87
>cd03718 SOCS_SSB1_4 SOCS (suppressors of cytokine signaling) box of SSB1 and SSB4 (SPRY domain-containing SOCS box proteins)-like proteins. SSB proteins contain a central SPRY domain and a C-terminal SOCS. SSB1 and SSB4 has been shown to bind to MET, the receptor protein-tyrosine kinase for hepatocyte growth factor (HGF) and also interacts with prostate apoptosis response protein-4. Both types of interactions are mediated through the SPRY domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=75.72 E-value=4.7 Score=26.69 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=22.4
Q ss_pred CCccHHHHHHHHHHHHHccCCC-CccccccCchHH
Q 007479 3 KAPSLISLAALAVKRELLLGDD-VIPYVYELPADL 36 (602)
Q Consensus 3 ~~p~l~~l~~~~~~~~l~~~~~-~~~~l~~lp~~l 36 (602)
.|+||++||-.+|.+++-.... +|..|. ||..|
T Consensus 2 ~P~sLq~LCR~~Ir~~lg~~~~~~I~~Lp-LP~~L 35 (42)
T cd03718 2 EPLPLMDLCRRRVRVALGRDRLEEIEQLP-LPPSL 35 (42)
T ss_pred CCCCHHHHHHHHHHHHhCcccccccccCC-CCHHH
Confidence 6899999999999888754432 554442 44443
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=75.65 E-value=4 Score=43.06 Aligned_cols=68 Identities=25% Similarity=0.282 Sum_probs=34.6
Q ss_pred hccCCCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccC--CCChHHHHHHHHHHhcCCCCCcEEEccCCCC
Q 007479 377 LVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENC--ELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 454 (602)
Q Consensus 377 l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 454 (602)
-.+.+.+..++|++|++-. +..+..--..-++|+.|+|++| .+... . -...++.++ |++|-+.+|.+
T Consensus 214 ~~n~p~i~sl~lsnNrL~~------Ld~~sslsq~apklk~L~LS~N~~~~~~~--~-el~K~k~l~--Leel~l~GNPl 282 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYH------LDALSSLSQIAPKLKTLDLSHNHSKISSE--S-ELDKLKGLP--LEELVLEGNPL 282 (585)
T ss_pred hcCCcceeeeecccchhhc------hhhhhHHHHhcchhheeecccchhhhcch--h-hhhhhcCCC--HHHeeecCCcc
Confidence 3456678888888887764 2211111122266777777777 22221 0 112222222 66666666665
Q ss_pred C
Q 007479 455 G 455 (602)
Q Consensus 455 ~ 455 (602)
.
T Consensus 283 c 283 (585)
T KOG3763|consen 283 C 283 (585)
T ss_pred c
Confidence 4
No 89
>cd03587 SOCS SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins with a SOCS box), and WSBs (WD40 repeat-containing proteins with a SOCS box), as well as, other miscellaneous proteins. The function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=75.56 E-value=4.9 Score=26.41 Aligned_cols=19 Identities=37% Similarity=0.345 Sum_probs=16.1
Q ss_pred CCccHHHHHHHHHHHHHcc
Q 007479 3 KAPSLISLAALAVKRELLL 21 (602)
Q Consensus 3 ~~p~l~~l~~~~~~~~l~~ 21 (602)
.||||++||.-+|.+++-.
T Consensus 1 ~p~sLq~LCR~~Ir~~lg~ 19 (41)
T cd03587 1 NPRSLQHLCRLAIRRCLGK 19 (41)
T ss_pred CCcCHHHHHHHHHHHHHCc
Confidence 3799999999999988743
No 90
>cd03717 SOCS_SOCS_like SOCS (suppressors of cytokine signaling) box of SOCS-like proteins. The CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. These intracellular proteins regulate the responses of immune cells to cytokines. Identified as negative regulators of the cytokine-JAK-STAT pathway, they seem to play a role in many immunological and pathological processes. The function of the SOCS box is the recruitment of the ubiquitin-transferase system. Related SOCS boxes are also present in Rab40-like proteins and insect proteins of unknown function that also contain a NEUZ (domain in neuralized proteins) domain.
Probab=71.90 E-value=10 Score=24.62 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=15.7
Q ss_pred CCCccHHHHHHHHHHHHH
Q 007479 2 VKAPSLISLAALAVKREL 19 (602)
Q Consensus 2 ~~~p~l~~l~~~~~~~~l 19 (602)
+.||||++||..+|.+++
T Consensus 1 ~~~~sLq~LCR~~Ir~~~ 18 (39)
T cd03717 1 TSVRSLQHLCRFVIRQCT 18 (39)
T ss_pred CCCCCHHHHHHHHHHHHc
Confidence 358999999999988886
No 91
>cd03743 SOCS_SSB4 SOCS (suppressors of cytokine signaling) box of SSB4 (SPRY domain-containing SOCS box proteins)-like proteins. SSB proteins contain a central SPRY domain and a C-terminal SOCS. SSB4 has been shown to bind to MET, the receptor protein-tyrosine kinase for hepatocyte growth factor (HGF). SSB4, like SSB2 and SSB1, also interacts with prostate apoptosis response protein-4. Both types of interactions are mediated through the SPRY domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=71.52 E-value=5.5 Score=26.34 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=24.1
Q ss_pred CCccHHHHHHHHHHHHHccCCC-CccccccCchHHH
Q 007479 3 KAPSLISLAALAVKRELLLGDD-VIPYVYELPADLF 37 (602)
Q Consensus 3 ~~p~l~~l~~~~~~~~l~~~~~-~~~~l~~lp~~l~ 37 (602)
+|++|.+||-.+|.+.+=++.- .|..|. ||..+-
T Consensus 2 ~P~sL~~lCRl~IR~~lg~~~l~~I~~L~-LP~~Lk 36 (42)
T cd03743 2 EPLPLMDLCRRSARQALGRHRLHHIQSLP-LPQTLK 36 (42)
T ss_pred CCcCHHHHHHHHHHHHHhHhhhccCccCC-CCHHHH
Confidence 5899999999999888866443 565554 555443
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=70.26 E-value=8.8 Score=40.61 Aligned_cols=65 Identities=18% Similarity=0.137 Sum_probs=34.5
Q ss_pred CCccEEEeeccCCChh-HHHHHHHHhhcCCCccEEeCcCCCCChHHHHHHHHhCccCCCccEEEccCCCCC
Q 007479 468 TSVQVLNIGAIGLGSS-GFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMP 537 (602)
Q Consensus 468 ~~L~~L~L~~n~l~~~-~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 537 (602)
+.+..++|++|.+-+. ++..++ ...++|..|+||+|.........+.. -+...|++|.+.||.+.
T Consensus 218 p~i~sl~lsnNrL~~Ld~~ssls---q~apklk~L~LS~N~~~~~~~~el~K--~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLS---QIAPKLKTLDLSHNHSKISSESELDK--LKGLPLEELVLEGNPLC 283 (585)
T ss_pred cceeeeecccchhhchhhhhHHH---Hhcchhheeecccchhhhcchhhhhh--hcCCCHHHeeecCCccc
Confidence 5577777777776432 223333 33456777777777321111111221 12455777777777754
No 93
>cd03742 SOCS_Rab40 SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as membrane-associated molecular switches. Rab40 is characterized by a SOCS box c-terminal to the GTPase domain. The SOCS boxes interact with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=67.61 E-value=12 Score=24.80 Aligned_cols=34 Identities=24% Similarity=0.141 Sum_probs=21.6
Q ss_pred CCccHHHHHHHHHHHHHccCCCCccccccCchHHHHH
Q 007479 3 KAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDI 39 (602)
Q Consensus 3 ~~p~l~~l~~~~~~~~l~~~~~~~~~l~~lp~~l~~~ 39 (602)
+.|||++||...|.++.- .++|..| .||.-|-+-
T Consensus 2 k~~SLQ~LCR~~I~~~t~--~~~I~~L-PLP~~Lk~y 35 (43)
T cd03742 2 KVLSLQDLCCRAIVSCTP--VYLIDKL-PLPVSIKSH 35 (43)
T ss_pred ccccHHHHHHHHHHHhCC--cchhhhC-CCCHHHHHH
Confidence 568999999999886642 2244444 455555533
No 94
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=66.42 E-value=2.4 Score=35.81 Aligned_cols=36 Identities=17% Similarity=0.370 Sum_probs=13.8
Q ss_pred CCCCCccEEEecCCCCChhhHHHHH-HHhccCCCccEEEecCC
Q 007479 350 KSLQSLRLLNLRGNNLCKADARDLG-SALVHIPNLEILDISDN 391 (602)
Q Consensus 350 ~~l~~L~~L~L~~n~l~~~~~~~l~-~~l~~l~~L~~L~Ls~n 391 (602)
..+.+|+.+.+.. .+.. +. ..+.+.++|+.+.+.++
T Consensus 9 ~~~~~l~~i~~~~-~~~~-----I~~~~F~~~~~l~~i~~~~~ 45 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKK-----IGENAFSNCTSLKSINFPNN 45 (129)
T ss_dssp TT-TT--EEEETS-T--E-----E-TTTTTT-TT-SEEEESST
T ss_pred hCCCCCCEEEECC-CeeE-----eChhhccccccccccccccc
Confidence 3555666666653 2222 11 12444445666666553
No 95
>cd03723 SOCS_ASB4_ASB18 SOCS (suppressors of cytokine signaling) box of ASB4 and ASB18 proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. Asb4 was identified as imprinted gene in mice. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=64.77 E-value=10 Score=25.89 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=21.8
Q ss_pred CCccHHHHHHHHHHHHHccCCC-CccccccCchHHH
Q 007479 3 KAPSLISLAALAVKRELLLGDD-VIPYVYELPADLF 37 (602)
Q Consensus 3 ~~p~l~~l~~~~~~~~l~~~~~-~~~~l~~lp~~l~ 37 (602)
.|+||+.||-.+|.+++-.... +|..| .||.-|-
T Consensus 2 ~P~SLqhLCR~~IR~~lg~~~~~~I~~L-pLP~~Lk 36 (48)
T cd03723 2 TPRSLQHLCRCAIRKLLGSRCHKLVPQL-SLPTSLK 36 (48)
T ss_pred CCCCHHHHHHHHHHHHhcccccccCccC-CCCHHHH
Confidence 4799999999998888754332 34333 4444443
No 96
>cd03727 SOCS_ASB8 SOCS (suppressors of cytokine signaling) box of ASB8-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. Human ASB8 is highly transcribed in skeletal muscle and in lung carcinoma cell lines. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=64.01 E-value=6.9 Score=25.95 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=17.3
Q ss_pred CCCccHHHHHHHHHHHHHccC
Q 007479 2 VKAPSLISLAALAVKRELLLG 22 (602)
Q Consensus 2 ~~~p~l~~l~~~~~~~~l~~~ 22 (602)
+.|++|++||-.+|.+++-++
T Consensus 1 ~~P~~Lq~LcR~aiR~~lg~~ 21 (43)
T cd03727 1 SAPGTLKALARYAVRRSLGVQ 21 (43)
T ss_pred CCCcCHHHHHHHHHHHHHhhh
Confidence 468999999999988887544
No 97
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=63.26 E-value=6.6 Score=22.92 Aligned_cols=13 Identities=23% Similarity=0.411 Sum_probs=8.0
Q ss_pred CCccEEeCcCCCC
Q 007479 496 LKLVNINISKNRG 508 (602)
Q Consensus 496 ~~L~~L~Ls~N~l 508 (602)
.+|+.|++++|+|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 3566666666665
No 98
>cd03726 SOCS_ASB7 SOCS (suppressors of cytokine signaling) box of ASB7-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=62.63 E-value=11 Score=25.35 Aligned_cols=34 Identities=9% Similarity=0.134 Sum_probs=22.7
Q ss_pred CCccHHHHHHHHHHHHHccCCC-CccccccCchHHH
Q 007479 3 KAPSLISLAALAVKRELLLGDD-VIPYVYELPADLF 37 (602)
Q Consensus 3 ~~p~l~~l~~~~~~~~l~~~~~-~~~~l~~lp~~l~ 37 (602)
.|++|++||--+|.+.+=++.- .|+.|. ||..+-
T Consensus 2 ~P~sL~~LCRl~IR~~lG~~~l~~I~~L~-lP~~Lk 36 (45)
T cd03726 2 QPRTLQDLCRIKIRHCIGLQNLKLLDELP-IAKVMK 36 (45)
T ss_pred CCcCHHHHHHHHHHHHHhhhhcccCccCC-CCHHHH
Confidence 4789999999998888755433 554444 444443
No 99
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=59.96 E-value=9.1 Score=32.19 Aligned_cols=13 Identities=31% Similarity=0.457 Sum_probs=6.0
Q ss_pred ccCCCccEEEecC
Q 007479 378 VHIPNLEILDISD 390 (602)
Q Consensus 378 ~~l~~L~~L~Ls~ 390 (602)
...++|+.+++..
T Consensus 78 ~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 78 SNCTNLKNIDIPS 90 (129)
T ss_dssp TT-TTECEEEETT
T ss_pred cccccccccccCc
Confidence 3345555555544
No 100
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=59.86 E-value=7.5 Score=22.30 Aligned_cols=13 Identities=38% Similarity=0.659 Sum_probs=7.3
Q ss_pred CccEEEecCCCCC
Q 007479 554 HLQRLDLTGNNWE 566 (602)
Q Consensus 554 ~L~~L~L~~N~l~ 566 (602)
+|++|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4555566555554
No 101
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=59.86 E-value=7.5 Score=22.30 Aligned_cols=13 Identities=38% Similarity=0.659 Sum_probs=7.3
Q ss_pred CccEEEecCCCCC
Q 007479 554 HLQRLDLTGNNWE 566 (602)
Q Consensus 554 ~L~~L~L~~N~l~ 566 (602)
+|++|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4555566555554
No 102
>cd03729 SOCS_ASB13 SOCS (suppressors of cytokine signaling) box of ASB13-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=57.34 E-value=16 Score=24.18 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=21.7
Q ss_pred CCccHHHHHHHHHHHHHccCCC-CccccccCchHHH
Q 007479 3 KAPSLISLAALAVKRELLLGDD-VIPYVYELPADLF 37 (602)
Q Consensus 3 ~~p~l~~l~~~~~~~~l~~~~~-~~~~l~~lp~~l~ 37 (602)
.|.||++||-.+|.+.+-.... .|..| .||..|-
T Consensus 2 ~P~sLqhLCR~~Ir~~lg~~~~~~i~~L-~LP~~Lk 36 (42)
T cd03729 2 TPLSLQQLCRINLRKALGTRALEKIAKL-NIPNRII 36 (42)
T ss_pred CCCCHHHHHHHHHHHHhchhhhccCccC-CCCHHHH
Confidence 5899999999998888644322 33333 4555443
No 103
>cd03722 SOCS_ASB3 SOCS (suppressors of cytokine signaling) box of ASB3-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ABS3 has been shown to be negative regulator of TNF-R2-mediated cellular responses to TNF-alpha by direct targeting of tumor necrosis factor receptor II (TNF-R2) for ubiquitination and proteasome-mediated degradation. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=55.92 E-value=13 Score=25.74 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=15.9
Q ss_pred CCCccHHHHHHHHHHHHHc
Q 007479 2 VKAPSLISLAALAVKRELL 20 (602)
Q Consensus 2 ~~~p~l~~l~~~~~~~~l~ 20 (602)
+.+|||+.||-.+|.+++=
T Consensus 1 ~~~~sLqhLCRl~IR~~lg 19 (51)
T cd03722 1 ASVPSLTHLCRLEIRSSLK 19 (51)
T ss_pred CCCccHHHHHHHHHHHHcc
Confidence 4689999999999887763
No 104
>cd03721 SOCS_ASB2 SOCS (suppressors of cytokine signaling) box of ASB2-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ASB2 targets specific proteins to destruction by the proteasome in leukemia cells that have been induced to differentiate. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=54.98 E-value=15 Score=24.70 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=22.4
Q ss_pred CCccHHHHHHHHHHHHHccCCC-CccccccCchHHH
Q 007479 3 KAPSLISLAALAVKRELLLGDD-VIPYVYELPADLF 37 (602)
Q Consensus 3 ~~p~l~~l~~~~~~~~l~~~~~-~~~~l~~lp~~l~ 37 (602)
.|++|++||-.+|.+.+-++.- .|+.| .||..|-
T Consensus 2 ~P~sLq~LCRl~IR~~lg~~~l~~I~~L-~LP~~Lk 36 (45)
T cd03721 2 PPRPLAHLCRLKVRTLIGINRIKLIDTL-PLPPRLI 36 (45)
T ss_pred CCCCHHHHHHHHHHHHHhHHhhccCccC-CCCHHHH
Confidence 5899999999998888754322 44444 4444443
No 105
>smart00253 SOCS suppressors of cytokine signalling. suppressors of cytokine signalling
Probab=48.08 E-value=46 Score=22.08 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=15.4
Q ss_pred CCccHHHHHHHHHHHHHc
Q 007479 3 KAPSLISLAALAVKRELL 20 (602)
Q Consensus 3 ~~p~l~~l~~~~~~~~l~ 20 (602)
.||||++||.-+|.+++-
T Consensus 6 ~~~sLqhLCR~~I~~~~~ 23 (43)
T smart00253 6 NVPSLQHLCRFTIRRCTR 23 (43)
T ss_pred CCCCHHHHHHHHHHHHcC
Confidence 579999999999887753
No 106
>cd03724 SOCS_ASB5 SOCS (suppressors of cytokine signaling) box of ASB5-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ASB5 has been implicated in the initiation of arteriogenesis. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=45.71 E-value=23 Score=23.45 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=19.7
Q ss_pred CCCccHHHHHHHHHHHHHccCCC-Ccc
Q 007479 2 VKAPSLISLAALAVKRELLLGDD-VIP 27 (602)
Q Consensus 2 ~~~p~l~~l~~~~~~~~l~~~~~-~~~ 27 (602)
|.|++|.+||--+|.+.+=++.. .|+
T Consensus 1 ~~P~sL~~lCRl~iR~~lg~~~~~~I~ 27 (42)
T cd03724 1 ATPSSLCQLCRLCIRNYIGRSRLHLIP 27 (42)
T ss_pred CCCcCHHHHHHHHHHHHHhHhhhccCc
Confidence 67999999999998888765433 443
No 107
>cd03730 SOCS_ASB14 SOCS (suppressors of cytokine signaling) box of ASB14-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=42.28 E-value=29 Score=24.74 Aligned_cols=19 Identities=21% Similarity=0.177 Sum_probs=15.8
Q ss_pred CCccHHHHHHHHHHHHHcc
Q 007479 3 KAPSLISLAALAVKRELLL 21 (602)
Q Consensus 3 ~~p~l~~l~~~~~~~~l~~ 21 (602)
.||||+.||-.+|.+++-+
T Consensus 2 ~P~sLQHLCRl~IR~~lg~ 20 (57)
T cd03730 2 NPRSLKHLCRLKIRACMGR 20 (57)
T ss_pred CCCCHHHHHHHHHHHHcCc
Confidence 4899999999998888643
No 108
>cd03719 SOCS_SSB2 SOCS (suppressors of cytokine signaling) box of SSB2 (SPRY domain-containing SOCS box proteins)-like proteins. SSB proteins contain a central SPRY domain and a C-terminal SOCS. SSB2 has been shown to bind to MET, the receptor protein-tyrosine kinase for hepatocyte growth factor (HGF). SSB2, like SSB4 and SSB1, also interacts with prostate apoptosis response protein-4. Both types of interactions are mediated through the SPRY domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=42.04 E-value=24 Score=23.35 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=20.6
Q ss_pred CCCccHHHHHHHHHHHHHccCCC-Ccccc
Q 007479 2 VKAPSLISLAALAVKRELLLGDD-VIPYV 29 (602)
Q Consensus 2 ~~~p~l~~l~~~~~~~~l~~~~~-~~~~l 29 (602)
+.|.+|.+||--+|.+.+-++.. .|+.|
T Consensus 1 ~~P~sL~~LcRl~IR~~lg~~~l~~i~~L 29 (42)
T cd03719 1 AEPHSLLHLSRLCVRHALGDTRLGQVSAL 29 (42)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHhccCccC
Confidence 57899999999998888766433 44443
No 109
>COG4572 ChaB Putative cation transport regulator [General function prediction only]
Probab=41.11 E-value=11 Score=27.58 Aligned_cols=31 Identities=10% Similarity=0.088 Sum_probs=27.1
Q ss_pred cccccCchHHHHHHHhcCChhhhhhhcccCC
Q 007479 27 PYVYELPADLFDILLTCLPPLALQKLQTKMP 57 (602)
Q Consensus 27 ~~l~~lp~~l~~~~~~~~p~l~~~~~~~~~p 57 (602)
.+-++||.++.++|...+..++.+||-.||-
T Consensus 4 k~~sdlp~~vr~~lp~haqdiy~~afnsA~e 34 (76)
T COG4572 4 KTKSDLPEEVRHQLPSHAQDIYKAAFNSAWE 34 (76)
T ss_pred cccccccHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4568999999999999999999999988775
No 110
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=40.86 E-value=2.3 Score=39.78 Aligned_cols=17 Identities=6% Similarity=-0.128 Sum_probs=7.9
Q ss_pred ccCCCccEEEccCCCCC
Q 007479 521 PLAPELVEVNAGYNLMP 537 (602)
Q Consensus 521 ~~~~~L~~L~Ls~n~l~ 537 (602)
+..|.++.+++..|.+.
T Consensus 108 ~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cccCCcchhhhccCcch
Confidence 33444444444444433
No 111
>cd03733 SOCS_WSB_SWIP SOCS (suppressors of cytokine signaling) box of WSB/SWiP-like proteins. This subfamily contains WSB-1 (SOCS-box-containing WD-40 protein), part of an E3 ubiquitin ligase for the thyroid-hormone-activating type 2 iodothyronine deiodinase (D2), and SWiP-1 (SOCS box and WD-repeats in Protein), a WD40-containing protein that is expressed in embryonic structures of chickens and regulated by Sonic Hedgehog (Shh), as well as, their isoforms WSB-2 and SWiP-2. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=39.95 E-value=44 Score=21.70 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=14.4
Q ss_pred CccHHHHHHHHHHHHHc
Q 007479 4 APSLISLAALAVKRELL 20 (602)
Q Consensus 4 ~p~l~~l~~~~~~~~l~ 20 (602)
+|||+.||-.+|.+++-
T Consensus 3 v~sLqhLCR~~Ir~~~~ 19 (39)
T cd03733 3 VSSLQHLCRMALRRVMT 19 (39)
T ss_pred CCCHHHHHHHHHHHHcc
Confidence 59999999999887764
No 112
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=39.45 E-value=18 Score=21.11 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=5.9
Q ss_pred ccEEEecCCCCC
Q 007479 555 LQRLDLTGNNWE 566 (602)
Q Consensus 555 L~~L~L~~N~l~ 566 (602)
|+.|++++|+++
T Consensus 4 L~~L~vs~N~Lt 15 (26)
T smart00364 4 LKELNVSNNQLT 15 (26)
T ss_pred cceeecCCCccc
Confidence 444555555443
No 113
>cd03720 SOCS_ASB1 SOCS (suppressors of cytokine signaling) box of ASB1-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=38.26 E-value=31 Score=22.81 Aligned_cols=21 Identities=38% Similarity=0.390 Sum_probs=17.1
Q ss_pred CCCccHHHHHHHHHHHHHccC
Q 007479 2 VKAPSLISLAALAVKRELLLG 22 (602)
Q Consensus 2 ~~~p~l~~l~~~~~~~~l~~~ 22 (602)
+.|++|++||--+|.+.|=+.
T Consensus 1 ~~P~sL~~LcR~~iR~~lG~~ 21 (42)
T cd03720 1 GNPRSLLSLCRIAVRRALGKQ 21 (42)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 468999999999988887553
No 114
>cd03740 SOCS_SOCS6 SOCS (suppressors of cytokine signaling) box of SOCS6-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=35.91 E-value=81 Score=20.73 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=14.1
Q ss_pred CCccHHHHHHHHHHHHH
Q 007479 3 KAPSLISLAALAVKREL 19 (602)
Q Consensus 3 ~~p~l~~l~~~~~~~~l 19 (602)
.++||++||...|.+..
T Consensus 2 ~v~sLqhLCR~~Ir~~~ 18 (41)
T cd03740 2 QVRSLQYLCRFVIRQYT 18 (41)
T ss_pred CcccHHHHHHHHHHHHc
Confidence 35899999999988774
No 115
>cd03744 SOCS_SSB1 SOCS (suppressors of cytokine signaling) box of SSB1 (SPRY domain-containing SOCS box proteins)-like proteins. SSB proteins contain a central SPRY domain and a C-terminal SOCS. SSB1 has been shown to bind to MET, the receptor protein-tyrosine kinase for hepatocyte growth factor (HGF), both the absence and the presence of HGF and enhances the HGF-MET-induced mitogen-activated protein kinases Erk-transcription factor Elk-1-serum response elements (SRE) pathway. SSB1, like SSB2 and SSB4, also interacts with prostate apoptosis response protein-4. Both types of interactions are mediated through the SPRY domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=34.88 E-value=38 Score=22.39 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=16.8
Q ss_pred CCccHHHHHHHHHHHHHccC
Q 007479 3 KAPSLISLAALAVKRELLLG 22 (602)
Q Consensus 3 ~~p~l~~l~~~~~~~~l~~~ 22 (602)
+|++|.+||--+|.+.+=++
T Consensus 2 ~P~sL~~LCRl~iR~~lg~~ 21 (42)
T cd03744 2 EPLPLMDLCRRSVRLALGRE 21 (42)
T ss_pred CCCCHHHHHHHHHHHHHhHh
Confidence 58999999999988887653
No 116
>cd03731 SOCS_ASB15 SOCS (suppressors of cytokine signaling) box of ASB15-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. Human ASB15 is expressed predominantly in skeletal muscle and participates in the regulation of protein turnover and muscle cell development by stimulating protein synthesis and regulating differentiation of muscle cells. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=33.56 E-value=42 Score=23.84 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=15.7
Q ss_pred CCccHHHHHHHHHHHHHcc
Q 007479 3 KAPSLISLAALAVKRELLL 21 (602)
Q Consensus 3 ~~p~l~~l~~~~~~~~l~~ 21 (602)
.|++|++||--+|.+.+-+
T Consensus 2 ~P~sL~~LCRl~IR~~lG~ 20 (56)
T cd03731 2 NPRPLKHLCRLKIRKLMGL 20 (56)
T ss_pred CCCCHHHHHHHHHHHHHhH
Confidence 4899999999998887743
No 117
>cd03746 SOCS_WSB1_SWIP1 SOCS (suppressors of cytokine signaling) box of WSB1/SWiP1-like proteins. This subfamily contains WSB-1 (SOCS-box-containing WD-40 protein), part of an E3 ubiquitin ligase for the thyroid-hormone-activating type 2 iodothyronine deiodinase (D2) and SWiP-1 (SOCS box and WD-repeats in Protein), a WD40-containing protein that is expressed in embryonic structures of chickens and regulated by Sonic Hedgehog (Shh). The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=33.01 E-value=75 Score=20.76 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=14.2
Q ss_pred CccHHHHHHHHHHHHHc
Q 007479 4 APSLISLAALAVKRELL 20 (602)
Q Consensus 4 ~p~l~~l~~~~~~~~l~ 20 (602)
.|||+.||-..|.+++-
T Consensus 3 v~sLQhLCR~~Ir~~~~ 19 (40)
T cd03746 3 VASLQHLCRMAIRRVMP 19 (40)
T ss_pred CcCHHHHHHHHHHHHcc
Confidence 48999999999887763
No 118
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=31.16 E-value=1.4 Score=41.11 Aligned_cols=60 Identities=13% Similarity=0.020 Sum_probs=27.6
Q ss_pred CccEEEecCCCCChhhHHHHHHHhccCCCccEEEecCCCCChhhHHhHHHHHHHhhcCCCCccEEEcccCCCCh
Q 007479 354 SLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 427 (602)
Q Consensus 354 ~L~~L~L~~n~l~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~ 427 (602)
.|..|+++.|++.. +|..++....+..+++..|..+. .| .+.+..++++++++-+|.+..
T Consensus 66 ~~~rl~~sknq~~~-----~~~d~~q~~e~~~~~~~~n~~~~------~p---~s~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 66 RLVRLDLSKNQIKF-----LPKDAKQQRETVNAASHKNNHSQ------QP---KSQKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred HHHHHhccHhhHhh-----ChhhHHHHHHHHHHHhhccchhh------CC---ccccccCCcchhhhccCcchH
Confidence 44444555444432 44444444444445555544443 33 334444555555555555443
No 119
>cd03725 SOCS_ASB6 SOCS (suppressors of cytokine signaling) box of ASB6-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ASB6 interacts with the adaptor protein APS and recruits elongin B/C to the insulin receptor signaling complex. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=30.12 E-value=82 Score=21.10 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.3
Q ss_pred CCccHHHHHHHHHHHHHc
Q 007479 3 KAPSLISLAALAVKRELL 20 (602)
Q Consensus 3 ~~p~l~~l~~~~~~~~l~ 20 (602)
.|++|+.||-..|.+++-
T Consensus 2 ~P~sLqhLCR~~Ir~~lg 19 (44)
T cd03725 2 YPPPLKHLCRVFIRLCLR 19 (44)
T ss_pred CCcCHHHHHHHHHHHhcC
Confidence 589999999999887763
No 120
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=29.25 E-value=39 Score=22.56 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=17.0
Q ss_pred ccCchHHHHHHHhcCChhhhhhh
Q 007479 30 YELPADLFDILLTCLPPLALQKL 52 (602)
Q Consensus 30 ~~lp~~l~~~~~~~~p~l~~~~~ 52 (602)
+.||.|+..+|...||+-.+..+
T Consensus 2 ~~LP~Eil~~If~~L~~~dl~~~ 24 (47)
T PF12937_consen 2 SSLPDEILLEIFSYLDPRDLLRL 24 (47)
T ss_dssp CCS-HHHHHHHHTTS-HHHHHHH
T ss_pred hHhHHHHHHHHHhcCCHHHHHHH
Confidence 57999999999999997655554
No 121
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=26.29 E-value=32 Score=32.90 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=54.3
Q ss_pred HHHHHHHHHH-ccCCC-CccccccCchHHHHHHHhcCChh-hhhhhcccCCCCCCCCCCCCCcccccccccccCCCchHH
Q 007479 10 LAALAVKREL-LLGDD-VIPYVYELPADLFDILLTCLPPL-ALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGNFNTV 86 (602)
Q Consensus 10 l~~~~~~~~l-~~~~~-~~~~l~~lp~~l~~~~~~~~p~l-~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 86 (602)
++.|.++.++ .++++ +=+.+-|||.|+.--|..+||.- .++...||||--. .+.. +. .-
T Consensus 181 l~~qqv~~~iqi~~~~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~--~l~~-e~---------------~i 242 (332)
T KOG3926|consen 181 LRWQQVLSQIQITEPDPAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLA--KLSE-ER---------------RI 242 (332)
T ss_pred HHHHHHHHhhcccCCCcCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHH--HHHH-HH---------------HH
Confidence 3445544443 23455 66789999999999999999943 5666667776433 2211 21 35
Q ss_pred HHHHHhcccCCCCCCCC-------CCchhHHHHHHHHHH
Q 007479 87 WKKLFKTRWSGFTDQIE-------PVDWQQRYWEAHVQG 118 (602)
Q Consensus 87 W~~~~~~~w~~~~~~~~-------~~~~~~~~~e~~~~~ 118 (602)
|+.+|.-.......... ..+|+++|+..--.+
T Consensus 243 WkkLcqfHF~erQi~~~l~l~k~~q~dWkqmyf~L~r~y 281 (332)
T KOG3926|consen 243 WKKLCQFHFNERQIHTILILSKKGQKDWKQMYFQLRRTY 281 (332)
T ss_pred HHHHHHHHhhHHHHHHhhhhccccchhHHHHHHHHHHhc
Confidence 88777554444221111 257999998654433
No 122
>cd03741 SOCS_SOCS7 SOCS (suppressors of cytokine signaling) box of SOCS7-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS7 is important in the functioning of neuronal cells. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=25.00 E-value=1.1e+02 Score=21.06 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=14.3
Q ss_pred CCccHHHHHHHHHHHHH
Q 007479 3 KAPSLISLAALAVKREL 19 (602)
Q Consensus 3 ~~p~l~~l~~~~~~~~l 19 (602)
.||||+.||-..|.++.
T Consensus 2 ~v~SLQhLCR~~Ir~~~ 18 (49)
T cd03741 2 NVQSLQHLCRFVIRKLV 18 (49)
T ss_pred CCccHHHHHHHHHHHHc
Confidence 47999999999988774
No 123
>cd03728 SOCS_ASB_9_11 SOCS (suppressors of cytokine signaling) box of ASB9 and 11 proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=22.13 E-value=67 Score=21.27 Aligned_cols=19 Identities=26% Similarity=0.439 Sum_probs=15.9
Q ss_pred CccHHHHHHHHHHHHHccC
Q 007479 4 APSLISLAALAVKRELLLG 22 (602)
Q Consensus 4 ~p~l~~l~~~~~~~~l~~~ 22 (602)
|++|.+||--+|.+.+=+.
T Consensus 3 P~sL~~LCRl~iR~~lg~~ 21 (42)
T cd03728 3 PPSLMQLCRLCIRKCFGRK 21 (42)
T ss_pred CcCHHHHHHHHHHHHHhHH
Confidence 8999999999988877544
No 124
>cd03737 SOCS_SOCS3 SOCS (suppressors of cytokine signaling) box of SOCS3-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS3, like CIS1 and SOCS1, is involved in the down-regulation of the JAK/STAT pathway. SOCS3 inhibits JAK activity indirectly through recruitment to the cytokine receptors. SOCS3 has been shown to play an essential role in placental development and a non-essential role in embryo development. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=22.00 E-value=1.3e+02 Score=19.89 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=19.0
Q ss_pred CccHHHHHHHHHHHHHccCCCCccccccCchHH
Q 007479 4 APSLISLAALAVKRELLLGDDVIPYVYELPADL 36 (602)
Q Consensus 4 ~p~l~~l~~~~~~~~l~~~~~~~~~l~~lp~~l 36 (602)
-|||+.||...|-++. .....++.||.-|
T Consensus 3 v~SLQHLCR~~In~~~----~~~~~~~~LP~~L 31 (42)
T cd03737 3 VSTLQHLCRKTVNGHL----DSYEKRTQLPLPI 31 (42)
T ss_pred cccHHHHHHHHHHHhc----CcccchhhccHHH
Confidence 4899999999966553 1223456777643
No 125
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=20.52 E-value=67 Score=21.37 Aligned_cols=27 Identities=26% Similarity=0.504 Sum_probs=20.4
Q ss_pred ccccCchHHHHHHHhcCChhhhhhhcc
Q 007479 28 YVYELPADLFDILLTCLPPLALQKLQT 54 (602)
Q Consensus 28 ~l~~lp~~l~~~~~~~~p~l~~~~~~~ 54 (602)
.+.+||.|+...|..++|+..+.++..
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~ 28 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSL 28 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCT
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHH
Confidence 467899999999999999877666644
Done!