Query 007479
Match_columns 602
No_of_seqs 368 out of 4015
Neff 9.7
Searched_HMMs 29240
Date Tue Mar 26 18:39:45 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/007479.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2187-2191//hhsearch_pdb/007479hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z7x_W Ribonuclease inhibitor; 1.0 1 1 271.1 40.6 370 198-588 86-459 (461)
2 1z7x_W Ribonuclease inhibitor; 1.0 1 1 268.6 36.1 374 192-590 51-436 (461)
3 3rgz_A Protein brassinosteroid 1.0 1 1 231.5 -6.5 64 409-479 486-549 (768)
4 4eco_A Uncharacterized protein 1.0 1 1 222.6 -7.0 280 189-531 239-543 (636)
5 4ecn_A Leucine-rich repeat pro 1.0 1 1 222.4 -4.7 285 189-533 481-785 (876)
6 3rgz_A Protein brassinosteroid 1.0 1 1 222.2 -6.9 110 352-480 417-526 (768)
7 2ca6_A RAN GTPase-activating p 1.0 1 1 219.3 25.7 290 281-580 24-330 (386)
8 3goz_A Leucine-rich repeat-con 1.0 1 1 212.3 20.0 277 259-550 24-310 (362)
9 3v47_A TOLL-like receptor 5B a 1.0 1 1 212.3 6.1 364 174-582 30-424 (455)
10 2ca6_A RAN GTPase-activating p 1.0 1 1 211.1 24.7 205 351-564 120-341 (386)
No 1
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=1.00 E-value=1 Score=271.08 Aligned_cols=370 Identities=19% Similarity=0.183 Sum_probs=213.8
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHH
Q ss_conf 73189900434338999999999752999549981589999358999999961123367850199905787766785217
Q 007479 198 KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV 277 (602)
Q Consensus 198 ~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~L~~~~~~~~~L~~L~l~~~~l~~~~~~~l 277 (602)
+|++|++++|.+.......+...+..+++|++|++++|.+.+.++..+...+..+ .++|++|++++|.+++ ..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~---~~~L~~L~L~~n~l~~----~~ 158 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDP---QCRLEKLQLEYCSLSA----AS 158 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTST---TCCCCEEECTTSCCBG----GG
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCC---CCCCEEEECCCCCCCH----HH
T ss_conf 6317980289787799999999972489645998979857637899999998407---8821599877998878----99
Q ss_pred HHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCE
Q ss_conf 99999973069984599817999994379999999973389858897238977886554687873565315889998448
Q 007479 278 VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRL 357 (602)
Q Consensus 278 ~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~l~~~~~~~~~~~l~~~l~~l~~~~~L~~ 357 (602)
...++..+..+++|++|++++|.+++.++..+...+....++|++|++++|.+++... ..+... +..+++|++
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~----~~l~~~---l~~~~~L~~ 231 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC----RDLCGI---VASKASLRE 231 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH----HHHHHH---HHHCTTCCE
T ss_pred HHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHH----HHHHHH---HHHCCCCCE
T ss_conf 9999999954999888977688766079999999985179981498723999968999----999999---970899667
Q ss_pred EEECCCCCCHHHHHHHHHHHC-CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHH
Q ss_conf 992299999445999999950-5999459970289999156984899989721389993189900699994789999999
Q 007479 358 LNLRGNNLCKADARDLGSALV-HIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDT 436 (602)
Q Consensus 358 L~l~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 436 (602)
|++++|.+++.++..+...+. ..++|+.|++++|.+++.|+..+. ..+..+++|++|++++|.+++.+...+...
T Consensus 232 L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~----~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 307 (461)
T 1z7x_W 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC----RVLRAKESLKELSLAGNELGDEGARLLCET 307 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH----HHHHHCTTCCEEECTTCCCHHHHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHH----HHHHHCCCCCEEECCCCCCCHHHHHHHHHH
T ss_conf 9645886871899999999716787712898737978889999999----998318984558788987766899999998
Q ss_pred HHCCCCCCCEEECCCCCCCHHHHHHHHHHHC--CCCCEEEEECCCCCHHHHHHHHHHHHC-CCCCCEEECCCCCCCHHHH
Q ss_conf 8309999869984699999589999998845--995399930668992579999998324-9995399676999996889
Q 007479 437 LSTLRRPPTSLSIADNNLGSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTK-ELKLVNINISKNRGGVETA 513 (602)
Q Consensus 437 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~--~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~~~~ 513 (602)
+.....+|+.|++++|.+++.+...+...+. ++|++|++++|.+++.+...+...+.. +++|++|++++|.+++.++
T Consensus 308 l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 387 (461)
T 1z7x_W 308 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSC 387 (461)
T ss_dssp HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH
T ss_pred HCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCHHHH
T ss_conf 60699620166867899966779999999852798667981588566336999999973799861798787789873669
Q ss_pred HHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 999982866998528981489999789999999996137981099812987999810899999988839995980
Q 007479 514 KFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNGLPILIL 588 (602)
Q Consensus 514 ~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~N~l~~~~~~~~~l~~~~~~~~p~~~~ 588 (602)
..++..+..+++|++|++++|.+++.++..+.++++...+.|+.|++.++.+. ......+..+.+.. |.+.+
T Consensus 388 ~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~--~~~~~~l~~l~~~~-p~l~i 459 (461)
T 1z7x_W 388 SSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS--EEMEDRLQALEKDK-PSLRV 459 (461)
T ss_dssp HHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC--HHHHHHHHHHHHHC-TTSEE
T ss_pred HHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHEEECCCCCC--HHHHHHHHHHHCCC-CCCEE
T ss_conf 99999998499945898989978879999999986568852555030335567--89999999975339-97276
No 2
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=1.00 E-value=1 Score=268.58 Aligned_cols=374 Identities=20% Similarity=0.190 Sum_probs=267.4
Q ss_pred HHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCC----CCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 5520697318990043433899999999975299----954998158999935899999996112336785019990578
Q 007479 192 QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSE----TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDIS 267 (602)
Q Consensus 192 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~l~----~L~~L~L~~~~~~~~~~~~l~~~L~~~~~~~~~L~~L~l~~~ 267 (602)
.+..+++|++|+++++.+.......+ ...+. +|++|++++|.+.+.+...+...+.. +++|+.|++++|
T Consensus 51 ~l~~~~~L~~L~Ls~n~l~~~~~~~l---~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~----~~~L~~L~Ls~n 123 (461)
T 1z7x_W 51 ALRVNPALAELNLRSNELGDVGVHCV---LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT----LPTLQELHLSDN 123 (461)
T ss_dssp HHHTCTTCCEEECTTCCCHHHHHHHH---HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTS----CTTCCEEECCSS
T ss_pred HHHHCCCCCEEECCCCCCCHHHHHHH---HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCC----CCCEEEEECCCC
T ss_conf 99748985778687886774899999---99874078763179802897877999999999724----896459989798
Q ss_pred CCCCCCCCHHHHHHHHHHH-CCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 7766785217999999730-699845998179999943799999999733898588972389778865546878735653
Q 007479 268 SFIENCPSSVVVELVSFLS-SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSL 346 (602)
Q Consensus 268 ~l~~~~~~~l~~~l~~~l~-~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~l~~~~~~~~~~~l~~~l 346 (602)
.+.+ ..+..+...+. ...+|++|++++|.+++..+..+...+ ..+++|++|++++|.+.+..+ ..+...+
T Consensus 124 ~i~~----~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~i~~~~~----~~l~~~l 194 (461)
T 1z7x_W 124 LLGD----AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL-RAKPDFKELTVSNNDINEAGV----RVLCQGL 194 (461)
T ss_dssp BCHH----HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH-HHCTTCCEEECCSSBCHHHHH----HHHHHHH
T ss_pred CCCH----HHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHH-HHCCCCCEEECCCCCCCHHHH----HHHHHHH
T ss_conf 5763----789999999840788215998779988789999999999-549998889776887660799----9999998
Q ss_pred HCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCC
Q ss_conf 15889998448992299999445999999950599945997028999915698489998972138999318990069999
Q 007479 347 GAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELS 426 (602)
Q Consensus 347 ~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~ 426 (602)
.. ..++|++|++++|.++..++..++..+..+++|+.|++++|.+++.|+..+.+. ....+++|++|++++|.++
T Consensus 195 ~~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~---~~~~~~~L~~L~L~~n~l~ 269 (461)
T 1z7x_W 195 KD--SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPG---LLHPSSRLRTLWIWECGIT 269 (461)
T ss_dssp HH--SCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH---HTSTTCCCCEEECTTSCCC
T ss_pred HC--CCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHH---HHCCCCCCEEEECCCCCCC
T ss_conf 51--799814987239999689999999999708996679645886871899999999---7167877128987379788
Q ss_pred HHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHC---CCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEC
Q ss_conf 47899999998309999869984699999589999998845---995399930668992579999998324999539967
Q 007479 427 GRGVSQLLDTLSTLRRPPTSLSIADNNLGSHIAASLGKFFG---TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINI 503 (602)
Q Consensus 427 ~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~---~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 503 (602)
..++..++..+..++ +|++|++++|.+++.++..+...+. ++|++|++++|.++..++..++..+..+++|++|++
T Consensus 270 ~~~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 348 (461)
T 1z7x_W 270 AKGCGDLCRVLRAKE-SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI 348 (461)
T ss_dssp HHHHHHHHHHHHHCT-TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEEC
T ss_pred HHHHHHHHHHHHHCC-CCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_conf 899999999983189-8455878898776689999999860699620166867899966779999999852798667981
Q ss_pred CCCCCCHHHHHHHHHHCCC-CCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHC-
Q ss_conf 6999996889999982866-99852898148999978999999999613798109981298799981089999998883-
Q 007479 504 SKNRGGVETAKFLSKLMPL-APELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHN- 581 (602)
Q Consensus 504 s~n~l~~~~~~~l~~~l~~-~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~N~l~~~~~~~~~l~~~~~~- 581 (602)
++|.+++.+...+...+.. +++|+.|++++|.+++.++..+...+.... +|+.|++++|+++ ..++..+.+....
T Consensus 349 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~L~~L~l~~N~i~--~~~~~~l~~~l~~~ 425 (461)
T 1z7x_W 349 SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH-SLRELDLSNNCLG--DAGILQLVESVRQP 425 (461)
T ss_dssp CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC-CCCEEECCSSSCC--HHHHHHHHHHHTST
T ss_pred CCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC-CCCEEECCCCCCC--HHHHHHHHHHHCCC
T ss_conf 58856633699999997379986179878778987366999999998499-9458989899788--79999999986568
Q ss_pred --CCCEEEECC
Q ss_conf --999598079
Q 007479 582 --GLPILILPT 590 (602)
Q Consensus 582 --~~p~~~~~~ 590 (602)
....+.+..
T Consensus 426 ~~~L~~L~~~~ 436 (461)
T 1z7x_W 426 GCLLEQLVLYD 436 (461)
T ss_dssp TCCCCEEECTT
T ss_pred CCCHHHEEECC
T ss_conf 85255503033
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=231.47 Aligned_cols=64 Identities=23% Similarity=0.344 Sum_probs=24.9
Q ss_pred HCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 13899931899006999947899999998309999869984699999589999998845995399930668
Q 007479 409 SERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGSHIAASLGKFFGTSVQVLNIGAIG 479 (602)
Q Consensus 409 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~L~~L~L~~n~ 479 (602)
+..+++|+.|++++|.++.. ++..+..+. +|+.|++++|.+.+..+..+..+ ++|+.|++++|.
T Consensus 486 l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l--~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 486 LSNCTNLNWISLSNNRLTGE----IPKWIGRLE-NLAILKLSNNSFSGNIPAELGDC--RSLIWLDLNTNL 549 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSC----CCGGGGGCT-TCCEEECCSSCCEEECCGGGGGC--TTCCEEECCSSE
T ss_pred HHCCCCCCEEECCCCCCCCC----CCHHHHCCC-CCCEEECCCCCCCCCCCHHHCCC--CCCCEEECCCCC
T ss_conf 81699899897539951896----876885689-99989897894337488777088--989989898884
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=222.56 Aligned_cols=280 Identities=16% Similarity=0.088 Sum_probs=134.2
Q ss_pred HHHHHH--CCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCCC-CCH-HHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 667552--069731899004343389999999997529995499815899-993-5899999996112336785019990
Q 007479 189 ETCQLL--RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK-LSP-SFVEGICRSLCSKRKRIHKIENLSI 264 (602)
Q Consensus 189 ~~~~l~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~~~-~~~~~l~~~L~~~~~~~~~L~~L~l 264 (602)
.+..+. ++.+|++|++++|...+.++.. +.++++|+.|++++|. +.. ..+..+..--. ...+.+|+.|++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~--~~~l~~L~~L~L 312 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTF----LKALPEMQLINVACNRGISGEQLKDDWQALAD--APVGEKIQIIYI 312 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTT----TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHH--SGGGGTCCEEEC
T ss_pred CCHHHHHCCCCCCCEEEECCCCCCCCCHHH----HHCCCCCCEEECCCCCCCCCCCCHHHHHHHHC--CCCCCCCCEEEC
T ss_conf 863220044687888980488577628388----83499978897847988766533578875430--465788888989
Q ss_pred CCCCCCCCCCCHHHHHHHH--HHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCH
Q ss_conf 5787766785217999999--73069984599817999994379999999973389858897238977886554687873
Q 007479 265 DISSFIENCPSSVVVELVS--FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGP 342 (602)
Q Consensus 265 ~~~~l~~~~~~~l~~~l~~--~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~l~~~~~~~~~~~l 342 (602)
++|.++. ++. .+..+++|++|++++|.+.+..| . +..+++|++|++++|.+. .+|
T Consensus 313 ~~n~l~~---------ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-----~~~l~~L~~L~L~~N~l~-~lp------- 369 (636)
T 4eco_A 313 GYNNLKT---------FPVETSLQKMKKLGMLECLYNQLEGKLP-A-----FGSEIKLASLNLAYNQIT-EIP------- 369 (636)
T ss_dssp CSSCCSS---------CCCHHHHTTCTTCCEEECCSCCCEEECC-C-----CEEEEEESEEECCSSEEE-ECC-------
T ss_pred CCCCCCC---------CCCHHHHCCCCCCCEEECCCCCCCCCHH-H-----HCCCCCCCEEECCCCCCC-CCC-------
T ss_conf 7993776---------6765554257888989690880705166-6-----478898898989899403-033-------
Q ss_pred HHHHHCCCCCCC-CCEEEECCCCCCHHHHHHHHHHHCCCC--CCCEEEECCCCCCHHHHHHHHHHHHHHHC-------CC
Q ss_conf 565315889998-448992299999445999999950599--94599702899991569848999897213-------89
Q 007479 343 LFSLGAGKSLQS-LRLLNLRGNNLCKADARDLGSALVHIP--NLEILDISDNTIEDDGIRSLIPYFVQASE-------RC 412 (602)
Q Consensus 343 ~~~l~~l~~~~~-L~~L~l~~n~l~~~~~~~l~~~l~~~~--~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~-------~~ 412 (602)
. .+..+++ |++|++++|.++. ++..+.... +|+.|++++|.+... .| ..+. .+
T Consensus 370 -~---~l~~l~~~L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls~N~l~~~-----~p---~~l~~~~~~~~~~ 432 (636)
T 4eco_A 370 -A---NFCGFTEQVENLSFAHNKLKY-----IPNIFDAKSVSVMSAIDFSYNEIGSV-----DG---KNFDPLDPTPFKG 432 (636)
T ss_dssp -T---TSEEECTTCCEEECCSSCCSS-----CCSCCCTTCSSCEEEEECCSSCTTTT-----TT---CSSCTTCSSCCCC
T ss_pred -H---HHHHHCCCCCEEECCCCCCCC-----CCHHHHHCCCCCCCEEECCCCCCCCC-----CH---HHHCCCCCCCCCC
T ss_conf -7---565102368689852982754-----46655333457668897748857886-----52---4420022011258
Q ss_pred CCCCEEECCCCCCCHHHHHHHHHHH-HCCCCCCCEEECCCCCCCHHHHHHHHHHHC------CCCCEEEEECCCCCHHHH
Q ss_conf 9931899006999947899999998-309999869984699999589999998845------995399930668992579
Q 007479 413 NPLVELYLENCELSGRGVSQLLDTL-STLRRPPTSLSIADNNLGSHIAASLGKFFG------TSVQVLNIGAIGLGSSGF 485 (602)
Q Consensus 413 ~~L~~L~L~~n~l~~~~~~~l~~~l-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~------~~L~~L~L~~n~l~~~~~ 485 (602)
.+|+.|++++|.++. ++..+ ..+. +|+.|++++|.+. ..+........ ++|+.|++++|.++.
T Consensus 433 ~~L~~L~Ls~N~l~~-----lp~~~~~~l~-~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--- 502 (636)
T 4eco_A 433 INVSSINLSNNQISK-----FPKELFSTGS-PLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTK--- 502 (636)
T ss_dssp CCEEEEECCSSCCCS-----CCTHHHHTTC-CCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCB---
T ss_pred CCCCEEECCCCCCCC-----CCHHHHCCCC-CCCEEECCCCCCC-CCCHHHHCCCCCCCCCCCCCCEEECCCCCCCC---
T ss_conf 988889772796686-----7878871589-8898989799788-73978840440012214773389896993881---
Q ss_pred HHHHHHHH--CCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCEEEC
Q ss_conf 99999832--49995399676999996889999982866998528981
Q 007479 486 RVLQDGVT--KELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNA 531 (602)
Q Consensus 486 ~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~l 531 (602)
++..+. ..++|++|++++|+++. ++..+..+++|+.|++
T Consensus 503 --lp~~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 503 --LSDDFRATTLPYLVGIDLSYNSFSK-----FPTQPLNSSTLKGFGI 543 (636)
T ss_dssp --CCGGGSTTTCTTCCEEECCSSCCSS-----CCCGGGGCSSCCEEEC
T ss_pred --CCHHHHHCCCCCCCEEECCCCCCCC-----CCHHHHCCCCCCEEEC
T ss_conf --6854534458876989898998877-----6823530888787889
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=222.37 Aligned_cols=285 Identities=16% Similarity=0.100 Sum_probs=125.5
Q ss_pred HHHHHH--CCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCCC-CCH-HHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 667552--069731899004343389999999997529995499815899-993-5899999996112336785019990
Q 007479 189 ETCQLL--RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK-LSP-SFVEGICRSLCSKRKRIHKIENLSI 264 (602)
Q Consensus 189 ~~~~l~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~~~-~~~~~l~~~L~~~~~~~~~L~~L~l 264 (602)
.+..+. ++.+|+.|++++|...+.++.. +.++++|+.|++++|. +.. ..+..+.. +......+++|+.|++
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~----l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~-L~~~~~~l~~L~~L~L 555 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDF----LYDLPELQSLNIACNRGISAAQLKADWTR-LADDEDTGPKIQIFYM 555 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGG----GGGCSSCCEEECTTCTTSCHHHHHHHHHH-HHHCTTTTTTCCEEEC
T ss_pred CCHHHHHCCCCCCCEEECCCCCCCCCCHHH----HHCCCCCCEEECCCCCCCCCCCCHHHHHH-HHHCCCCCCCCCEEEE
T ss_conf 874440255999778987189887527387----73799989998968987656646177875-2330155688319982
Q ss_pred CCCCCCCCCCCHHHHHHHH--HHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCH
Q ss_conf 5787766785217999999--73069984599817999994379999999973389858897238977886554687873
Q 007479 265 DISSFIENCPSSVVVELVS--FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGP 342 (602)
Q Consensus 265 ~~~~l~~~~~~~l~~~l~~--~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~l~~~~~~~~~~~l 342 (602)
++|.+.. ++. .+..+++|+.|++++|.+. ..| . +..+++|+.|++++|.+. .+|
T Consensus 556 s~N~L~~---------ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~-----~~~L~~L~~L~Ls~N~l~-~lp------- 611 (876)
T 4ecn_A 556 GYNNLEE---------FPASASLQKMVKLGLLDCVHNKVR-HLE-A-----FGTNVKLTDLKLDYNQIE-EIP------- 611 (876)
T ss_dssp CSSCCCB---------CCCHHHHTTCTTCCEEECTTSCCC-BCC-C-----CCTTSEESEEECCSSCCS-CCC-------
T ss_pred ECCCCCC---------CCCHHHHHCCCCCCEEECCCCCCC-CCH-H-----HCCCCCCEEEECCCCCCC-CCH-------
T ss_conf 2894776---------187235515898898989799825-621-2-----247985007987187125-035-------
Q ss_pred HHHHHCCCCCCC-CCEEEECCCCCCHHHHHHHHHHHCCCC--CCCEEEECCCCCCHHHHHHHHHHHHHHHC--CCCCCCE
Q ss_conf 565315889998-448992299999445999999950599--94599702899991569848999897213--8999318
Q 007479 343 LFSLGAGKSLQS-LRLLNLRGNNLCKADARDLGSALVHIP--NLEILDISDNTIEDDGIRSLIPYFVQASE--RCNPLVE 417 (602)
Q Consensus 343 ~~~l~~l~~~~~-L~~L~l~~n~l~~~~~~~l~~~l~~~~--~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~--~~~~L~~ 417 (602)
. .+..+++ |+.|++++|.++. ++..+...+ +|+.|++++|.+.+. .|.+...+. ...+|+.
T Consensus 612 -~---~l~~l~~~L~~L~Ls~N~L~~-----lp~~~~~~~~~~L~~L~Ls~N~l~g~-----ip~l~~~l~~~~~~~L~~ 677 (876)
T 4ecn_A 612 -E---DFCAFTDQVEGLGFSHNKLKY-----IPNIFNAKSVYVMGSVDFSYNKIGSE-----GRNISCSMDDYKGINAST 677 (876)
T ss_dssp -T---TSCEECTTCCEEECCSSCCCS-----CCSCCCTTCSSCEEEEECCSSCTTTT-----SSSCSSCTTTCCCCCEEE
T ss_pred -H---HHHHCCCCCCEEECCCCCCCC-----CCHHHHCCCCCCCCEEECCCCCCCCC-----CCCCHHHHCCCCCCCCCE
T ss_conf -8---775251149899984997874-----76445225567778897708847886-----432000000135797688
Q ss_pred EECCCCCCCHHHHHHHHHHHH-CCCCCCCEEECCCCCCCHHHHHHHHHHHC------CCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 990069999478999999983-09999869984699999589999998845------99539993066899257999999
Q 007479 418 LYLENCELSGRGVSQLLDTLS-TLRRPPTSLSIADNNLGSHIAASLGKFFG------TSVQVLNIGAIGLGSSGFRVLQD 490 (602)
Q Consensus 418 L~L~~n~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~------~~L~~L~L~~n~l~~~~~~~l~~ 490 (602)
|++++|.++. ++..+. .+. +|+.|++++|.+. ..+..+..... ++|+.|++++|.++. ++.
T Consensus 678 L~Ls~N~L~~-----lp~~~~~~l~-~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-----lp~ 745 (876)
T 4ecn_A 678 VTLSYNEIQK-----FPTELFATGS-PISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-----LSD 745 (876)
T ss_dssp EECCSSCCCS-----CCHHHHHTTC-CCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-----CCG
T ss_pred EECCCCCCCC-----CCHHHHCCCC-CCCEEECCCCCCC-CCCHHHHCCCCCCCCCCCCCCEEECCCCCCCC-----CHH
T ss_conf 9831996886-----5978871389-8899989899688-54967845553343214871589888997866-----527
Q ss_pred HHH--CCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCEEECCC
Q ss_conf 832--4999539967699999688999998286699852898148
Q 007479 491 GVT--KELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGY 533 (602)
Q Consensus 491 ~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~ls~ 533 (602)
.+. .+++|+.|+|++|.+.. ++..+..+++|+.|++++
T Consensus 746 ~l~~~~l~~L~~L~Ls~N~L~~-----lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 746 DFRATTLPYLSNMDVSYNCFSS-----FPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp GGSTTTCTTCCEEECCSSCCSS-----CCCGGGGCTTCCEEECCC
T ss_pred HHHHCCCCCCCEEEECCCCCCC-----CCHHHHCCCCCCEEECCC
T ss_conf 7624427986989908997876-----105661599988998879
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=222.21 Aligned_cols=110 Identities=25% Similarity=0.327 Sum_probs=43.2
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHH
Q ss_conf 99844899229999944599999995059994599702899991569848999897213899931899006999947899
Q 007479 352 LQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVS 431 (602)
Q Consensus 352 ~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 431 (602)
+++|++|++++|.++.. ++..+..+++|+.|++++|.+.+. .| ..+..+++|+.|++++|.++..
T Consensus 417 l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~-----~p---~~~~~l~~L~~L~L~~N~l~~~--- 481 (768)
T 3rgz_A 417 CSELVSLHLSFNYLSGT----IPSSLGSLSKLRDLKLWLNMLEGE-----IP---QELMYVKTLETLILDFNDLTGE--- 481 (768)
T ss_dssp CTTCCEEECCSSEEESC----CCGGGGGCTTCCEEECCSSCCCSC-----CC---GGGGGCTTCCEEECCSSCCCSC---
T ss_pred CCCCCEEECCCCCCCCC----CCHHHHCCCCCCEEECCCCCCCCC-----CC---HHHCCCCCCEEEEECCCCCCCC---
T ss_conf 89879898958846685----467774499889898978815471-----89---7882877732999019951375---
Q ss_pred HHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 9999983099998699846999995899999988459953999306689
Q 007479 432 QLLDTLSTLRRPPTSLSIADNNLGSHIAASLGKFFGTSVQVLNIGAIGL 480 (602)
Q Consensus 432 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~L~~L~L~~n~l 480 (602)
++..+..+. +|+.|++++|.+.+..+.++..+ ++|+.|++++|.+
T Consensus 482 -~p~~l~~l~-~L~~L~L~~N~l~~~~p~~~~~l--~~L~~L~L~~N~l 526 (768)
T 3rgz_A 482 -IPSGLSNCT-NLNWISLSNNRLTGEIPKWIGRL--ENLAILKLSNNSF 526 (768)
T ss_dssp -CCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGC--TTCCEEECCSSCC
T ss_pred -CCHHHHCCC-CCCEEECCCCCCCCCCCHHHHCC--CCCCEEECCCCCC
T ss_conf -887881699-89989753995189687688568--9999898978943
No 7
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=1.00 E-value=1 Score=219.26 Aligned_cols=290 Identities=15% Similarity=0.148 Sum_probs=199.3
Q ss_pred HHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCC---CCCCCCCCCCHHHHHHCCCCCCCCCE
Q ss_conf 999730699845998179999943799999999733898588972389778---86554687873565315889998448
Q 007479 281 LVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG---GWLSKYDRSGPLFSLGAGKSLQSLRL 357 (602)
Q Consensus 281 l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~l~---~~~~~~~~~~l~~~l~~l~~~~~L~~ 357 (602)
++..+..+++|++|++++|.+++..+..+... +..+++|++|++++|.+. +.+| ..+.....++..+++|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~Ls~~~~~~l~~~~~----~~~~~l~~~l~~~~~L~~ 98 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN-IASKKDLEIAEFSDIFTGRVKDEIP----EALRLLLQALLKCPKLHT 98 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHT-TTTCTTCCEEECCSCCTTSCGGGSH----HHHHHHHHHHTTCTTCCE
T ss_pred HHHHHHCCCCCCEEECCCCCCCHHHHHHHHHH-HHHCCCCCEEECCCCCCCCCCCCHH----HHHHHHHHHHHHCCCCCE
T ss_conf 99998368995379787997889999999999-9747996688673122476421016----999999999964896157
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCC---------CCCCEEECCCCCCCHH
Q ss_conf 9922999994459999999505999459970289999156984899989721389---------9931899006999947
Q 007479 358 LNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERC---------NPLVELYLENCELSGR 428 (602)
Q Consensus 358 L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~---------~~L~~L~L~~n~l~~~ 428 (602)
|++++|.++..++..++..+..+++|+.|++++|.+++.+...+.. .+..+ ++|++|++++|.++..
T Consensus 99 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~----~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~ 174 (386)
T 2ca6_A 99 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR----ALQELAVNKKAKNAPPLRSIICGRNRLENG 174 (386)
T ss_dssp EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH----HHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred EECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHH----HHHHHHHHHHCCCCCCCCEEECCCCCCCCH
T ss_conf 9897886788999999999985899788978699998899999999----999876502002489876898989999857
Q ss_pred HHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHH-HHC--CCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCC
Q ss_conf 899999998309999869984699999589999998-845--99539993066899257999999832499953996769
Q 007479 429 GVSQLLDTLSTLRRPPTSLSIADNNLGSHIAASLGK-FFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISK 505 (602)
Q Consensus 429 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~--~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 505 (602)
++..+...+..+. +|++|++++|.+++.+...+.. .+. ++|+.|++++|.+++.|+..++..+..+++|++|+|++
T Consensus 175 ~~~~l~~~l~~~~-~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 175 SMKEWAKTFQSHR-LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp GHHHHHHHHHHCT-TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred HHHHHHHHHHHCC-CCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCEEECCC
T ss_conf 9999999998389-958897969988876999999998525998637979689897389999999970399867897999
Q ss_pred CCCCHHHHHHHHHHCCC--CCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 99996889999982866--9985289814899997899999999961379810998129879998108999999888
Q 007479 506 NRGGVETAKFLSKLMPL--APELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRH 580 (602)
Q Consensus 506 n~l~~~~~~~l~~~l~~--~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~N~l~~~~~~~~~l~~~~~ 580 (602)
|.+++.++..++..+.. +++|+.|++++|.+++.++..+...+..+.++|+.|++++|.++.....+..+.....
T Consensus 254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~ 330 (386)
T 2ca6_A 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFS 330 (386)
T ss_dssp CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 97853369999999842658874799775776887999999999983589755998237867862458999999853
No 8
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=1.00 E-value=1 Score=212.33 Aligned_cols=277 Identities=18% Similarity=0.217 Sum_probs=159.6
Q ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHHHCCC-CCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 0199905787766785217999999730699-845998179999943799999999733898588972389778865546
Q 007479 259 IENLSIDISSFIENCPSSVVVELVSFLSSGR-SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 337 (602)
Q Consensus 259 L~~L~l~~~~l~~~~~~~l~~~l~~~l~~~~-~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~l~~~~~~~ 337 (602)
|+.|++++|.+++.+ +..+...+..++ +|++|++++|.+++.++..+...+....++|++|++++|.+++..+
T Consensus 24 L~~L~Ls~n~l~~~~----~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~-- 97 (362)
T 3goz_A 24 VTSLDLSLNNLYSIS----TVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS-- 97 (362)
T ss_dssp CCEEECTTSCGGGSC----HHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH--
T ss_pred CEEEECCCCCCCHHH----HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHH--
T ss_conf 519976389888078----99999999728886559987499777889999999986068986389896886872899--
Q ss_pred CCCCHHHHHHCCCCC-CCCCEEEECCCCCCHHHHHHHHHHHCCC-CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCC-C
Q ss_conf 878735653158899-9844899229999944599999995059-994599702899991569848999897213899-9
Q 007479 338 DRSGPLFSLGAGKSL-QSLRLLNLRGNNLCKADARDLGSALVHI-PNLEILDISDNTIEDDGIRSLIPYFVQASERCN-P 414 (602)
Q Consensus 338 ~~~~l~~~l~~l~~~-~~L~~L~l~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~-~ 414 (602)
..+...+ ..+ ++|++|++++|.++..+...+...+... ++|+.|++++|.+++.|...+.. .+.... +
T Consensus 98 --~~l~~~l---~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~----~l~~~~~~ 168 (362)
T 3goz_A 98 --DELVKTL---AAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ----ILAAIPAN 168 (362)
T ss_dssp --HHHHHHH---HTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH----HHHTSCTT
T ss_pred --HHHHHHH---HHCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH----HHHCCCCC
T ss_conf --9999999---84777764898959968707899999999847995349976188498799999999----98627766
Q ss_pred CCEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHH---CCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 3189900699994789999999830999986998469999958999999884---5995399930668992579999998
Q 007479 415 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGSHIAASLGKFF---GTSVQVLNIGAIGLGSSGFRVLQDG 491 (602)
Q Consensus 415 L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l---~~~L~~L~L~~n~l~~~~~~~l~~~ 491 (602)
|++|++++|.+++.+...+...+...+++|++|++++|.+++.+...+...+ +++|++|++++|.+++.+...+...
T Consensus 169 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 248 (362)
T 3goz_A 169 VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLL 248 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 54765227888515699999999857787878989799897667999999983289985399772898981789999999
Q ss_pred HHCCCCCCEEECCCCC---CCHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 3249995399676999---9968899999828669985289814899997899999999961
Q 007479 492 VTKELKLVNINISKNR---GGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKV 550 (602)
Q Consensus 492 l~~~~~L~~L~Ls~n~---l~~~~~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~ 550 (602)
+..+++|++|++++|. ++..+...+...+..+++|+.|++++|.+.+.....++..++.
T Consensus 249 ~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~~l~~ 310 (362)
T 3goz_A 249 KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRE 310 (362)
T ss_dssp TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHHHHHH
T ss_pred HHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 73378855898015876566989999999974037844899668986788423888899997
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=1.00 E-value=1 Score=212.25 Aligned_cols=364 Identities=16% Similarity=0.092 Sum_probs=219.8
Q ss_pred CCHHHHCCCCCCHHH-HHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHCC
Q ss_conf 100122014652078-6675520697318990043433899999999975299954998158999935899999996112
Q 007479 174 HYARCLRLQNALCVE-ETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 252 (602)
Q Consensus 174 ~~l~~L~l~~~~~~~-~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~L~~~ 252 (602)
..++.|++.+..... .+..+.++.+|++|+++++.....+. ...+.++++|++|++++|.+....+..+..
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----- 101 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR---NNTFRGLSSLIILKLDYNQFLQLETGAFNG----- 101 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEEC---TTTTTTCTTCCEEECTTCTTCEECTTTTTT-----
T ss_pred CCCCEEEECCCCCCCCCHHHHCCCCCCCEEECCCCCCCCEEC---CCCCCCCCCCCEEECCCCCCCCCCHHHCCC-----
T ss_conf 756779806883574786575047655578876885442678---451336655787728988537658645257-----
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCHHHHHHHHH--HHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 33678501999057877667852179999997--3069984599817999994379999999973389858897238977
Q 007479 253 RKRIHKIENLSIDISSFIENCPSSVVVELVSF--LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSI 330 (602)
Q Consensus 253 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~--l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~l 330 (602)
+.+|++|++++|.+++ . .+.. +..+++|++|++++|.+.+..+..+ +..+++|++|++++|.+
T Consensus 102 ---l~~L~~L~L~~n~l~~----~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 102 ---LANLEVLTLTQCNLDG----A----VLSGNFFKPLTSLEMLVLRDNNIKKIQPASF----FLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp ---CTTCCEEECTTSCCBT----H----HHHSSTTTTCTTCCEEECCSSBCCSCCCCGG----GGGCTTCCEEECTTCCB
T ss_pred ---CCCCCEEECCCCCCCC----C----CCCCCCCCCCCCCCEEECCCCCCCCCCCCCC----CCCCCCCCEEECCCCCC
T ss_conf ---5348897687888775----5----4470212681208998799996675480020----07777466786777865
Q ss_pred CCCCCCCCC----------------------CCHH-HHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 886554687----------------------8735-65315889998448992299999445999999950599945997
Q 007479 331 GGWLSKYDR----------------------SGPL-FSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILD 387 (602)
Q Consensus 331 ~~~~~~~~~----------------------~~l~-~~l~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~ 387 (602)
.+..+.... ..+. ........+++|++|++++|.++......+...+ ...+|+.|+
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~-~~~~L~~L~ 245 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI-AGTKIQSLI 245 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT-TTCCEEEEE
T ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHCCC-CCCCEEEEE
T ss_conf 6557556310142000102455672422531104632134313465012685678866532303342123-556355675
Q ss_pred ECCCCCCHHHHHHH-----HHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHH
Q ss_conf 02899991569848-----9998972138999318990069999478999999983099998699846999995899999
Q 007479 388 ISDNTIEDDGIRSL-----IPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGSHIAASL 462 (602)
Q Consensus 388 Ls~n~l~~~g~~~l-----~p~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 462 (602)
+++|.......... .+..... ....+|+.|++++|.++.. .+..+..+. +|+.|++++|.+.+..+..+
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~----~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~ 319 (455)
T 3v47_A 246 LSNSYNMGSSFGHTNFKDPDNFTFKG-LEASGVKTCDLSKSKIFAL----LKSVFSHFT-DLEQLTLAQNEINKIDDNAF 319 (455)
T ss_dssp CTTCTTTSCCTTCCSSCCCCTTTTGG-GTTSCCCEEECCSSCCCEE----CTTTTTTCT-TCCEEECTTSCCCEECTTTT
T ss_pred ECCCCCCCCCCCHHHHCCCCCCCCCC-CCCCCCEEEEECCCCCCCC----CHHHCCCCC-CCCEEECCCCCCCCCCHHHH
T ss_conf 03443432322102203675233344-3456732898437620134----654505477-77888899883045686675
Q ss_pred HHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHH
Q ss_conf 98845995399930668992579999998324999539967699999688999998286699852898148999978999
Q 007479 463 GKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLT 542 (602)
Q Consensus 463 ~~~l~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~ 542 (602)
..+ ++|++|++++|.++... ...+...++|++|++++|+++... +..+..+++|+.|++++|.++.....
T Consensus 320 ~~l--~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~ 389 (455)
T 3v47_A 320 WGL--THLLKLNLSQNFLGSID----SRMFENLDKLEVLDLSYNHIRALG----DQSFLGLPNLKELALDTNQLKSVPDG 389 (455)
T ss_dssp TTC--TTCCEEECCSSCCCEEC----GGGGTTCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CCC--CCCCEEECCCCCCCCCC----HHHHCCCCCCCEEECCCCCCCCCC----HHHCCCCCCCCEEECCCCCCCCCCHH
T ss_conf 486--56878989898668749----667267335878989899635259----65624665664898999936647976
Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 9999996137981099812987999810899999988839
Q 007479 543 IICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNG 582 (602)
Q Consensus 543 ~l~~~l~~~~~~L~~L~L~~N~l~~~~~~~~~l~~~~~~~ 582 (602)
.+. ..++|+.|++++|+++.....+..+......+
T Consensus 390 ~~~-----~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~ 424 (455)
T 3v47_A 390 IFD-----RLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 424 (455)
T ss_dssp TTT-----TCTTCCEEECCSSCBCCCTTTTHHHHHHHHHT
T ss_pred HHC-----CCCCCCEEECCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 733-----57765589806998046777026899999747
No 10
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=1.00 E-value=1 Score=211.10 Aligned_cols=205 Identities=17% Similarity=0.233 Sum_probs=111.7
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHCCC---------CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECC
Q ss_conf 999844899229999944599999995059---------99459970289999156984899989721389993189900
Q 007479 351 SLQSLRLLNLRGNNLCKADARDLGSALVHI---------PNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLE 421 (602)
Q Consensus 351 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~---------~~L~~L~Ls~n~l~~~g~~~l~p~l~~~l~~~~~L~~L~L~ 421 (602)
.+++|++|++++|.++..+...++..+..+ ++|+.|++++|.+++.++..+. ..+..+++|+.|+++
T Consensus 120 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~----~~l~~~~~L~~L~L~ 195 (386)
T 2ca6_A 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA----KTFQSHRLLHTVKMV 195 (386)
T ss_dssp HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH----HHHHHCTTCCEEECC
T ss_pred HCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHH----HHHHHCCCCCEEECC
T ss_conf 5899788978699998899999999999876502002489876898989999857999999----999838995889796
Q ss_pred CCCCCHHHHHHHHH-HHHCCCCCCCEEECCCCCCCHHHHHHHHHHHC--CCCCEEEEECCCCCHHHHHHHHHHHHC--CC
Q ss_conf 69999478999999-98309999869984699999589999998845--995399930668992579999998324--99
Q 007479 422 NCELSGRGVSQLLD-TLSTLRRPPTSLSIADNNLGSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTK--EL 496 (602)
Q Consensus 422 ~n~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~--~~L~~L~L~~n~l~~~~~~~l~~~l~~--~~ 496 (602)
+|.++..++..+.. .+..++ +|+.|++++|.+++.+...+...+. ++|++|++++|.+++.+...++..+.. ++
T Consensus 196 ~n~l~~~g~~~l~~~~l~~~~-~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~ 274 (386)
T 2ca6_A 196 QNGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI 274 (386)
T ss_dssp SSCCCHHHHHHHHHTTGGGCT-TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSC
T ss_pred CCCCCHHHHHHHHHHHHHCCC-CCCEEECCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 998887699999999852599-8637979689897389999999970399867897999978533699999998426588
Q ss_pred CCCEEECCCCCCCHHHHHHHHHHC-CCCCCCCEEECCCCCCCHHH--HHHHHHHHHHCCCCCCEEEECCCC
Q ss_conf 953996769999968899999828-66998528981489999789--999999996137981099812987
Q 007479 497 KLVNINISKNRGGVETAKFLSKLM-PLAPELVEVNAGYNLMPLES--LTIICSALKVAKGHLQRLDLTGNN 564 (602)
Q Consensus 497 ~L~~L~Ls~n~l~~~~~~~l~~~l-~~~~~L~~L~ls~n~l~~~~--~~~l~~~l~~~~~~L~~L~L~~N~ 564 (602)
+|++|+|++|.++..++..++..+ ..+++|+.|++++|.+++.+ ...+...++.. +.+++..+.
T Consensus 275 ~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~----~~~~l~~~d 341 (386)
T 2ca6_A 275 GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR----GRGELDELD 341 (386)
T ss_dssp CCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHH----TCCEECCCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHC----CCCHHHHCC
T ss_conf 7479977577688799999999998358975599823786786245899999985314----822244146
Done!