BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007480
(602 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 114/452 (25%), Positives = 201/452 (44%), Gaps = 68/452 (15%)
Query: 27 FHQAFPIVEPDPGHTKLRLSREGLETIRRITNPIAAIAVIGPYRSGKSFLLNQLLSLSCD 86
H P+ + + +L + E L+ + IT P+ +A++G YR+GKS+L+N+L
Sbjct: 5 IHMTGPMCLIENTNGRLMANPEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKK-- 62
Query: 87 EGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSNVYDDR-IFALA 145
+GF +G + TKGIW+W P + LDTEG + K + +D IFALA
Sbjct: 63 KGFSLGSTVQSHTKGIWMWCVP---HPKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALA 119
Query: 146 TVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQD-----------VAFEPAKL 194
++SS +YN TI + + +L + EL + + V+F P
Sbjct: 120 VLLSSTFVYNSIGTINQQAMDQLYYVTELTHRIRSKSSPDENENEVEDSADFVSFFP-DF 178
Query: 195 VWLIQRDFLQGKSVQEMVHDALQRVPND---------KGDKNIDMV-NQIRNSLAIMGDN 244
VW + RDF ++ D P++ KG D N R +
Sbjct: 179 VWTL-RDF-----SLDLEADGQPLTPDEYLTYSLKLKKGTSQKDETFNLPRLCIRKFFPK 232
Query: 245 STAFSLPQPHLLR--TKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKF-LNGNE 301
F +P R +L ++DEELDP +V++ + S ++ K + G +NG
Sbjct: 233 KKCFVFDRPVHRRKLAQLEKLQDEELDPEFVQQVADFCSYIFSNSKTKTLSGGIQVNGPR 292
Query: 302 FVAFMEQILEALNKGEIP----STGSLVEVFNKGILERCLKLYNERMAKVRLPLPEQSLQ 357
+ + + A++ G++P + +L ++ N +++ + Y ++M + ++ LP +SLQ
Sbjct: 293 LESLVLTYVNAISSGDLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQ-KVQLPTESLQ 351
Query: 358 ---DAHERSKKEAMDVF------DVQHFGRQHAKKSVMQLDEEIQEAYKNVIMANEYQSS 408
D H S++EA++VF DV H ++ +L ++++ + N+ SS
Sbjct: 352 ELLDLHRDSEREAIEVFIRSSFKDVDHLFQK-------ELAAQLEKKRDDFCKQNQEASS 404
Query: 409 KICESLYTRCEDKMDQLQVLRLPSMAKFNAGF 440
C L LQV+ P + AG
Sbjct: 405 DRCSGL----------LQVIFSPLEEEVKAGI 426
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 145/325 (44%), Gaps = 38/325 (11%)
Query: 20 GLLAIENFHQAFPIVEPDPGHTKLRLSREGLETIRRITNPIAAIAVIGPYRSGKSFLLNQ 79
G +A E H P+ + + +L + E L+ + IT P+ +A++G YR+GKS+L+N+
Sbjct: 10 GSMASE-IHMTGPMCLIENTNGRLMANPEALKILSAITQPMVVVAIVGLYRTGKSYLMNK 68
Query: 80 LLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGK-SNVYD 138
L +GF +G + TKGIW+W P + + LDTEG + K N D
Sbjct: 69 LAGKK--KGFSLGSTVQSHTKGIWMWCVPHPKK---PGHILVLLDTEGLGDVEKGDNQND 123
Query: 139 DRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQD-----------V 187
IFALA ++SS +YN TI + + +L + EL + + V
Sbjct: 124 SWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTELTHRIRSKSSPDENENEVEDSADFV 183
Query: 188 AFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPND---------KGDKNID-MVNQIRNS 237
+F P VW + RDF ++ D P++ KG D N R
Sbjct: 184 SFFP-DFVWTL-RDF-----SLDLEADGQPLTPDEYLTYSLKLKKGTSQKDETFNLPRLC 236
Query: 238 LAIMGDNSTAFSLPQPHLLR--TKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGK 295
+ F +P R +L ++DEELDP +V++ + S ++ K + G
Sbjct: 237 IRKFFPKKKCFVFDRPVHRRKLAQLEKLQDEELDPEFVQQVADFCSYIFSNSKTKTLSGG 296
Query: 296 F-LNGNEFVAFMEQILEALNKGEIP 319
+NG + + + A++ G++P
Sbjct: 297 IQVNGPRLESLVLTYVNAISSGDLP 321
>pdb|4IDQ|A Chain A, Human Atlastin-1 1-446, N440t, Gdpalf4-
pdb|4IDQ|B Chain B, Human Atlastin-1 1-446, N440t, Gdpalf4-
pdb|4IDQ|C Chain C, Human Atlastin-1 1-446, N440t, Gdpalf4-
pdb|4IDQ|D Chain D, Human Atlastin-1 1-446, N440t, Gdpalf4-
Length = 447
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 95/388 (24%), Positives = 183/388 (47%), Gaps = 54/388 (13%)
Query: 60 IAAIAVIGPYRSGKSFLLNQLLSLSCDE--------------GFGVGHMRDTKTKGIWVW 105
+ A++V G +R GKSFL++ +L ++ GF + +T GI +W
Sbjct: 68 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIW 127
Query: 106 GNPVEM-EIDGSRTSVFYLDTEG-FESIGKSNVYDD-RIFALATVMSSVLIYNLPETIRE 162
+ + DG + +V +DT+G F+S +S + D +FAL+T++SS+ +YNL + ++E
Sbjct: 128 SEIFLINKPDGKKVAVLLMDTQGTFDS--QSTLRDSATVFALSTMISSIQVYNLSQNVQE 185
Query: 163 ADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDA------L 216
D+ L E YGR+ ++ +P + + + RD+ E + A L
Sbjct: 186 DDLQHLQLFTE-----YGRLAMEETFLKPFQSLIFLVRDW---SFPYEFSYGADGGAKFL 237
Query: 217 QRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHL--LRTKLCDMKDEELDPIYVK 274
++ G+++ ++ N +R + N + F LP P L D K +E+D ++K
Sbjct: 238 EKRLKVSGNQHEELQN-VRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIK 296
Query: 275 RREQLKKLVASVTRPKIVQGKFLNGNE-----FVAFMEQILEALNKGEIPSTGSLV---- 325
LK L+ + P+ + K +NGN+ V + + ++ E+P S++
Sbjct: 297 ---NLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATA 353
Query: 326 EVFNKGILERCLKLYNERMAKV----RLPLPEQSLQDAHERSKKEAMDVFD--VQHFGRQ 379
E N + YN++M ++ + L LQ H + K+E++ +F + G +
Sbjct: 354 EANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEE 413
Query: 380 HAKKSVMQLDEEIQEAYKNVIMANEYQS 407
+++ + QL+ EI E Y I N+ ++
Sbjct: 414 FSRRYLQQLESEIDELYIQYIKHNDSKT 441
>pdb|3Q5E|A Chain A, Crystal Structure Of Human Atlastin-1 (Residues 1-447)
Bound To Gdp, Crystal Form 2
pdb|3Q5E|C Chain C, Crystal Structure Of Human Atlastin-1 (Residues 1-447)
Bound To Gdp, Crystal Form 2
pdb|3Q5E|E Chain E, Crystal Structure Of Human Atlastin-1 (Residues 1-447)
Bound To Gdp, Crystal Form 2
pdb|3Q5E|G Chain G, Crystal Structure Of Human Atlastin-1 (Residues 1-447)
Bound To Gdp, Crystal Form 2
Length = 447
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 95/385 (24%), Positives = 181/385 (47%), Gaps = 54/385 (14%)
Query: 60 IAAIAVIGPYRSGKSFLLNQLLSLSCDE--------------GFGVGHMRDTKTKGIWVW 105
+ A++V G +R GKSFL++ +L ++ GF + +T GI +W
Sbjct: 67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIW 126
Query: 106 GNPVEM-EIDGSRTSVFYLDTEG-FESIGKSNVYDD-RIFALATVMSSVLIYNLPETIRE 162
+ + DG + +V +DT+G F+S +S + D +FAL+T++SS+ +YNL + ++E
Sbjct: 127 SEIFLINKPDGKKVAVLLMDTQGTFDS--QSTLRDSATVFALSTMISSIQVYNLSQNVQE 184
Query: 163 ADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDA------L 216
D+ L E YGR+ ++ +P + + + RD+ E + A L
Sbjct: 185 DDLQHLQLFTE-----YGRLAMEETFLKPFQSLIFLVRDW---SFPYEFSYGADGGAKFL 236
Query: 217 QRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHL--LRTKLCDMKDEELDPIYVK 274
++ G+++ ++ N +R + N + F LP P L D K +E+D ++K
Sbjct: 237 EKRLKVSGNQHEELQN-VRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIK 295
Query: 275 RREQLKKLVASVTRPKIVQGKFLNGNE-----FVAFMEQILEALNKGEIPSTGSLV---- 325
LK L+ + P+ + K +NGN+ V + + ++ E+P S++
Sbjct: 296 ---NLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATA 352
Query: 326 EVFNKGILERCLKLYNERMAKV----RLPLPEQSLQDAHERSKKEAMDVFD--VQHFGRQ 379
E N + YN++M ++ + L LQ H + K+E++ +F + G +
Sbjct: 353 EANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEE 412
Query: 380 HAKKSVMQLDEEIQEAYKNVIMANE 404
+++ + QL+ EI E Y I N+
Sbjct: 413 FSRRYLQQLESEIDELYIQYIKHND 437
>pdb|3QNU|A Chain A, Crystal Structure Of The Cytosolic Domain Of Human
Atlastin-1 In Complex With Gdp, Hexagonal Form
pdb|3QOF|A Chain A, Crystal Structure Of The Cytosolic Domain Of Human
Atlastin-1 In Complex With Gdp, Orthorhombic Form
pdb|3QOF|B Chain B, Crystal Structure Of The Cytosolic Domain Of Human
Atlastin-1 In Complex With Gdp, Orthorhombic Form
pdb|3QOF|C Chain C, Crystal Structure Of The Cytosolic Domain Of Human
Atlastin-1 In Complex With Gdp, Orthorhombic Form
pdb|3QOF|D Chain D, Crystal Structure Of The Cytosolic Domain Of Human
Atlastin-1 In Complex With Gdp, Orthorhombic Form
Length = 459
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 95/385 (24%), Positives = 181/385 (47%), Gaps = 54/385 (14%)
Query: 60 IAAIAVIGPYRSGKSFLLNQLLSLSCDE--------------GFGVGHMRDTKTKGIWVW 105
+ A++V G +R GKSFL++ +L ++ GF + +T GI +W
Sbjct: 79 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIW 138
Query: 106 GNPVEM-EIDGSRTSVFYLDTEG-FESIGKSNVYDD-RIFALATVMSSVLIYNLPETIRE 162
+ + DG + +V +DT+G F+S +S + D +FAL+T++SS+ +YNL + ++E
Sbjct: 139 SEIFLINKPDGKKVAVLLMDTQGTFDS--QSTLRDSATVFALSTMISSIQVYNLSQNVQE 196
Query: 163 ADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDA------L 216
D+ L E YGR+ ++ +P + + + RD+ E + A L
Sbjct: 197 DDLQHLQLFTE-----YGRLAMEETFLKPFQSLIFLVRDW---SFPYEFSYGADGGAKFL 248
Query: 217 QRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHL--LRTKLCDMKDEELDPIYVK 274
++ G+++ ++ N +R + N + F LP P L D K +E+D ++K
Sbjct: 249 EKRLKVSGNQHEELQN-VRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIK 307
Query: 275 RREQLKKLVASVTRPKIVQGKFLNGNE-----FVAFMEQILEALNKGEIPSTGSLV---- 325
LK L+ + P+ + K +NGN+ V + + ++ E+P S++
Sbjct: 308 ---NLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATA 364
Query: 326 EVFNKGILERCLKLYNERMAKV----RLPLPEQSLQDAHERSKKEAMDVFD--VQHFGRQ 379
E N + YN++M ++ + L LQ H + K+E++ +F + G +
Sbjct: 365 EANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEE 424
Query: 380 HAKKSVMQLDEEIQEAYKNVIMANE 404
+++ + QL+ EI E Y I N+
Sbjct: 425 FSRRYLQQLESEIDELYIQYIKHND 449
>pdb|4IDN|A Chain A, Human Atlastin-1 1-446, C-his6, Gppnhp
pdb|4IDN|B Chain B, Human Atlastin-1 1-446, C-his6, Gppnhp
pdb|4IDO|A Chain A, Human Atlastin-1 1-446, C-his6, Gdpalf4-
pdb|4IDO|B Chain B, Human Atlastin-1 1-446, C-his6, Gdpalf4-
Length = 457
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 95/385 (24%), Positives = 181/385 (47%), Gaps = 54/385 (14%)
Query: 60 IAAIAVIGPYRSGKSFLLNQLLSLSCDE--------------GFGVGHMRDTKTKGIWVW 105
+ A++V G +R GKSFL++ +L ++ GF + +T GI +W
Sbjct: 67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIW 126
Query: 106 GNPVEM-EIDGSRTSVFYLDTEG-FESIGKSNVYDD-RIFALATVMSSVLIYNLPETIRE 162
+ + DG + +V +DT+G F+S +S + D +FAL+T++SS+ +YNL + ++E
Sbjct: 127 SEIFLINKPDGKKVAVLLMDTQGTFDS--QSTLRDSATVFALSTMISSIQVYNLSQNVQE 184
Query: 163 ADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDA------L 216
D+ L E YGR+ ++ +P + + + RD+ E + A L
Sbjct: 185 DDLQHLQLFTE-----YGRLAMEETFLKPFQSLIFLVRDW---SFPYEFSYGADGGAKFL 236
Query: 217 QRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHL--LRTKLCDMKDEELDPIYVK 274
++ G+++ ++ N +R + N + F LP P L D K +E+D ++K
Sbjct: 237 EKRLKVSGNQHEELQN-VRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIK 295
Query: 275 RREQLKKLVASVTRPKIVQGKFLNGNE-----FVAFMEQILEALNKGEIPSTGSLV---- 325
LK L+ + P+ + K +NGN+ V + + ++ E+P S++
Sbjct: 296 ---NLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATA 352
Query: 326 EVFNKGILERCLKLYNERMAKV----RLPLPEQSLQDAHERSKKEAMDVFD--VQHFGRQ 379
E N + YN++M ++ + L LQ H + K+E++ +F + G +
Sbjct: 353 EANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEE 412
Query: 380 HAKKSVMQLDEEIQEAYKNVIMANE 404
+++ + QL+ EI E Y I N+
Sbjct: 413 FSRRYLQQLESEIDELYIQYIKHND 437
>pdb|4IDP|A Chain A, Human Atlastin-1 1-446, N440t, Gppnhp
pdb|4IDP|B Chain B, Human Atlastin-1 1-446, N440t, Gppnhp
pdb|4IDP|C Chain C, Human Atlastin-1 1-446, N440t, Gppnhp
pdb|4IDP|D Chain D, Human Atlastin-1 1-446, N440t, Gppnhp
Length = 447
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 94/388 (24%), Positives = 177/388 (45%), Gaps = 54/388 (13%)
Query: 60 IAAIAVIGPYRSGKSFLLNQLLSLSCDE--------------GFGVGHMRDTKTKGIWVW 105
+ A++V G +R GKSFL + L ++ GF + +T GI +W
Sbjct: 68 VVAVSVAGAFRKGKSFLXDFXLRYXYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIW 127
Query: 106 GNPVEM-EIDGSRTSVFYLDTEG-FESIGKSNVYDD-RIFALATVMSSVLIYNLPETIRE 162
+ + DG + +V DT+G F+S +S + D +FAL+T +SS+ +YNL + ++E
Sbjct: 128 SEIFLINKPDGKKVAVLLXDTQGTFDS--QSTLRDSATVFALSTXISSIQVYNLSQNVQE 185
Query: 163 ADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDA------L 216
D+ L E YGR+ ++ +P + + + RD+ E + A L
Sbjct: 186 DDLQHLQLFTE-----YGRLAXEETFLKPFQSLIFLVRDW---SFPYEFSYGADGGAKFL 237
Query: 217 QRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHL--LRTKLCDMKDEELDPIYVK 274
++ G+++ ++ N +R + N + F LP P L D K +E+D ++K
Sbjct: 238 EKRLKVSGNQHEELQN-VRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIK 296
Query: 275 RREQLKKLVASVTRPKIVQGKFLNGNE-----FVAFMEQILEALNKGEIPSTGSLV---- 325
LK L+ + P+ + K +NGN+ V + + ++ E+P S +
Sbjct: 297 ---NLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSXLQATA 353
Query: 326 EVFNKGILERCLKLYNERMAKV----RLPLPEQSLQDAHERSKKEAMDVFD--VQHFGRQ 379
E N + YN++ ++ + L LQ H + K+E++ +F + G +
Sbjct: 354 EANNLAAVATAKDTYNKKXEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKXGGEE 413
Query: 380 HAKKSVMQLDEEIQEAYKNVIMANEYQS 407
+++ + QL+ EI E Y I N+ ++
Sbjct: 414 FSRRYLQQLESEIDELYIQYIKHNDSKT 441
>pdb|3Q5D|A Chain A, Crystal Structure Of Human Atlastin-1 (Residues 1-447)
Bound To Gdp, Crystal Form 1
Length = 447
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 94/385 (24%), Positives = 175/385 (45%), Gaps = 54/385 (14%)
Query: 60 IAAIAVIGPYRSGKSFLLNQLLSLSCDE--------------GFGVGHMRDTKTKGIWVW 105
+ A++V G +R GKSFL + L ++ GF + +T GI +W
Sbjct: 67 VVAVSVAGAFRKGKSFLXDFXLRYXYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIW 126
Query: 106 GNPVEM-EIDGSRTSVFYLDTEG-FESIGKSNVYDD-RIFALATVMSSVLIYNLPETIRE 162
+ + DG + +V DT+G F+S +S + D +FAL+T +SS+ +YNL + ++E
Sbjct: 127 SEIFLINKPDGKKVAVLLXDTQGTFDS--QSTLRDSATVFALSTXISSIQVYNLSQNVQE 184
Query: 163 ADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDA------L 216
D+ L E YGR+ ++ +P + + + RD+ E + A L
Sbjct: 185 DDLQHLQLFTE-----YGRLAXEETFLKPFQSLIFLVRDW---SFPYEFSYGADGGAKFL 236
Query: 217 QRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHL--LRTKLCDMKDEELDPIYVK 274
++ G+++ ++ N +R + N + F LP P L D K +E+D ++K
Sbjct: 237 EKRLKVSGNQHEELQN-VRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIK 295
Query: 275 RREQLKKLVASVTRPKIVQGKFLNGNE-----FVAFMEQILEALNKGEIPSTGSLV---- 325
LK L+ + P+ + K +NGN+ V + + ++ E+P S +
Sbjct: 296 ---NLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSXLQATA 352
Query: 326 EVFNKGILERCLKLYNERMAKV----RLPLPEQSLQDAHERSKKEAMDVFD--VQHFGRQ 379
E N + YN++ ++ + L LQ H + K+E++ +F + G +
Sbjct: 353 EANNLAAVATAKDTYNKKXEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKXGGEE 412
Query: 380 HAKKSVMQLDEEIQEAYKNVIMANE 404
+++ + QL+ EI E Y I N+
Sbjct: 413 FSRRYLQQLESEIDELYIQYIKHND 437
>pdb|3E0S|A Chain A, Crystal Structure Of An Uncharacterized Protein From
Chlorobium Tepidum
pdb|3E0S|B Chain B, Crystal Structure Of An Uncharacterized Protein From
Chlorobium Tepidum
Length = 326
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 19/97 (19%)
Query: 239 AIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQ----- 293
+ TA+ L L + D++D + +Y+ RRE+ L+ RP +
Sbjct: 67 GVFDPEKTAWMLAGLRELGKRTNDLRDSD---VYLLRREEYTSLLPPSLRPALDPFFSDL 123
Query: 294 -----------GKFLNGNEFVAFMEQILEALNKGEIP 319
++L G E+ FM + E + +GE+P
Sbjct: 124 EADKRLHHRQFCRYLTGREYSGFMTSLKEFIAEGELP 160
>pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53
Peptide
pdb|1S7G|A Chain A, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|B Chain B, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|C Chain C, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|D Chain D, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|E Chain E, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1YC2|A Chain A, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|B Chain B, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|C Chain C, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|D Chain D, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|E Chain E, Sir2af2-Nad-Adpribose-Nicotinamide
Length = 253
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 310 LEALNKGEIPSTGSLVEVFNKGILERCLKL----YNERMAKVRLPLPEQSLQDAHERSK 364
L+ L+ E VE FNKG + RC K R+ PLP+++L +A E +K
Sbjct: 124 LDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAK 182
>pdb|1NG5|A Chain A, 2.0 A Crystal Structure Of Staphylococcus Aureus Sortase B
pdb|1NG5|B Chain B, 2.0 A Crystal Structure Of Staphylococcus Aureus Sortase B
Length = 215
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 13/153 (8%)
Query: 203 LQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIR--NSLAIM-----GDNSTAFSLPQPHL 255
LQGK+ + ++ +R KG +D N+++ N I+ GDN T F + + +L
Sbjct: 58 LQGKTNHDYLNLDFEREHRRKGSIFMDFRNELKNLNHNTILYGHHVGDN-TMFDVLEDYL 116
Query: 256 LRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNEFVAFMEQILEALNK 315
++ K E D Y K + Q+ + T+ ++ F N ++ +Q L+ +
Sbjct: 117 KQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDNYIRTDFENDQDY----QQFLDETKR 172
Query: 316 GEIPSTGSLVEVFNKGI-LERCLKLYNERMAKV 347
+ ++ V V +K + L C Y+E ++
Sbjct: 173 KSVINSDVNVTVKDKIMTLSTCEDAYSETTKRI 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,452,024
Number of Sequences: 62578
Number of extensions: 707645
Number of successful extensions: 2139
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2110
Number of HSP's gapped (non-prelim): 17
length of query: 602
length of database: 14,973,337
effective HSP length: 104
effective length of query: 498
effective length of database: 8,465,225
effective search space: 4215682050
effective search space used: 4215682050
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)