Query 007480
Match_columns 602
No_of_seqs 414 out of 3271
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 11:10:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02263 GBP: Guanylate-bindin 100.0 6.6E-44 1.4E-48 365.4 13.3 242 41-291 2-259 (260)
2 cd01851 GBP Guanylate-binding 100.0 3.8E-30 8.3E-35 258.3 14.1 217 55-285 2-223 (224)
3 KOG2037 Guanylate-binding prot 100.0 2.3E-29 5.1E-34 276.6 10.5 353 32-439 5-384 (552)
4 PF02841 GBP_C: Guanylate-bind 99.9 8.2E-23 1.8E-27 213.5 19.4 157 293-450 1-167 (297)
5 PF05879 RHD3: Root hair defec 99.9 4.5E-20 9.8E-25 213.3 30.7 351 66-459 1-399 (742)
6 COG1126 GlnQ ABC-type polar am 99.9 1.5E-21 3.3E-26 191.3 11.2 215 33-330 2-226 (240)
7 COG3842 PotA ABC-type spermidi 99.8 3.8E-20 8.2E-25 195.7 13.5 218 32-331 4-228 (352)
8 KOG2203 GTP-binding protein [G 99.8 1.8E-18 3.9E-23 186.1 24.7 244 53-342 30-305 (772)
9 COG3839 MalK ABC-type sugar tr 99.8 1.6E-19 3.4E-24 190.1 10.5 201 52-331 18-225 (338)
10 COG1135 AbcC ABC-type metal io 99.8 3.5E-19 7.6E-24 182.6 11.4 217 35-329 3-231 (339)
11 COG1120 FepC ABC-type cobalami 99.8 3.9E-19 8.5E-24 180.8 9.6 220 43-337 8-236 (258)
12 COG1136 SalX ABC-type antimicr 99.8 7.4E-19 1.6E-23 175.5 11.0 198 43-317 11-219 (226)
13 COG1116 TauB ABC-type nitrate/ 99.8 1E-18 2.3E-23 175.3 12.1 185 50-315 16-206 (248)
14 KOG2037 Guanylate-binding prot 99.8 1.3E-17 2.8E-22 184.3 18.3 375 26-414 29-454 (552)
15 COG2884 FtsE Predicted ATPase 99.8 2.5E-18 5.3E-23 165.6 9.9 168 34-280 2-180 (223)
16 COG1118 CysA ABC-type sulfate/ 99.7 4.2E-18 9.2E-23 174.4 10.4 205 48-329 13-227 (345)
17 COG1127 Ttg2A ABC-type transpo 99.7 5.4E-18 1.2E-22 168.7 9.5 217 31-329 6-235 (263)
18 COG1124 DppF ABC-type dipeptid 99.7 5.3E-17 1.2E-21 162.1 13.5 219 33-328 3-230 (252)
19 COG1121 ZnuC ABC-type Mn/Zn tr 99.7 5.4E-17 1.2E-21 164.5 13.5 224 32-335 3-233 (254)
20 COG3840 ThiQ ABC-type thiamine 99.7 1.8E-17 3.8E-22 158.7 8.2 192 61-331 26-221 (231)
21 COG1131 CcmA ABC-type multidru 99.7 5.5E-17 1.2E-21 169.4 12.1 200 49-327 17-224 (293)
22 COG1122 CbiO ABC-type cobalt t 99.7 2.1E-17 4.5E-22 167.1 6.7 208 43-329 11-228 (235)
23 COG3638 ABC-type phosphate/pho 99.7 6.7E-17 1.5E-21 160.5 9.7 227 33-336 3-243 (258)
24 COG1117 PstB ABC-type phosphat 99.7 4.7E-16 1E-20 152.4 15.4 214 45-330 15-238 (253)
25 PRK09452 potA putrescine/sperm 99.7 1.1E-16 2.4E-21 172.4 11.8 216 31-329 12-234 (375)
26 PRK11650 ugpC glycerol-3-phosp 99.7 1.3E-16 2.8E-21 170.9 11.6 201 50-329 17-224 (356)
27 TIGR02314 ABC_MetN D-methionin 99.7 1E-16 2.2E-21 170.7 10.8 200 50-328 18-229 (343)
28 PRK11432 fbpC ferric transport 99.7 1.3E-16 2.9E-21 170.5 11.4 213 33-328 6-225 (351)
29 PRK11607 potG putrescine trans 99.7 2.1E-16 4.6E-21 170.3 12.3 218 29-329 15-239 (377)
30 PRK13537 nodulation ABC transp 99.7 2.5E-16 5.3E-21 165.4 12.2 212 31-327 5-225 (306)
31 TIGR03265 PhnT2 putative 2-ami 99.7 1.8E-16 3.9E-21 169.6 11.2 202 49-329 16-224 (353)
32 COG0411 LivG ABC-type branched 99.7 1.5E-16 3.3E-21 158.8 9.6 235 32-337 3-247 (250)
33 COG1125 OpuBA ABC-type proline 99.7 1.3E-16 2.9E-21 159.7 7.6 205 49-329 13-225 (309)
34 TIGR03258 PhnT 2-aminoethylpho 99.6 4.2E-16 9.2E-21 167.2 11.2 201 50-329 18-228 (362)
35 PRK13536 nodulation factor exp 99.6 5.9E-16 1.3E-20 164.8 11.9 213 31-328 39-260 (340)
36 PRK11000 maltose/maltodextrin 99.6 5.5E-16 1.2E-20 166.8 11.3 200 50-328 16-222 (369)
37 cd03261 ABC_Org_Solvent_Resist 99.6 8.6E-16 1.9E-20 154.6 11.2 200 50-327 13-224 (235)
38 cd03265 ABC_DrrA DrrA is the A 99.6 1.1E-15 2.4E-20 152.3 11.5 192 50-320 13-212 (220)
39 PRK11629 lolD lipoprotein tran 99.6 1.1E-15 2.3E-20 153.8 11.1 205 32-318 4-223 (233)
40 TIGR01188 drrA daunorubicin re 99.6 8.6E-16 1.9E-20 160.8 10.6 198 50-327 6-211 (302)
41 PRK10851 sulfate/thiosulfate t 99.6 1.1E-15 2.4E-20 163.5 11.4 205 50-329 15-226 (353)
42 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.6 1.7E-15 3.7E-20 150.5 11.6 171 50-299 17-199 (218)
43 cd03218 ABC_YhbG The ABC trans 99.6 2.4E-15 5.3E-20 150.8 12.6 198 50-327 13-220 (232)
44 PRK11153 metN DL-methionine tr 99.6 1.3E-15 2.8E-20 162.4 11.0 200 50-328 18-229 (343)
45 TIGR00960 3a0501s02 Type II (G 99.6 2.1E-15 4.6E-20 149.8 11.6 169 51-299 17-196 (216)
46 TIGR01288 nodI ATP-binding ABC 99.6 2.3E-15 5.1E-20 157.7 12.1 198 50-327 17-222 (303)
47 TIGR01186 proV glycine betaine 99.6 2E-15 4.2E-20 162.0 11.3 200 50-328 6-218 (363)
48 cd03259 ABC_Carb_Solutes_like 99.6 2.6E-15 5.7E-20 148.8 11.0 190 50-318 13-209 (213)
49 cd03293 ABC_NrtD_SsuB_transpor 99.6 3.7E-15 8E-20 148.6 11.7 156 50-286 17-177 (220)
50 cd03296 ABC_CysA_sulfate_impor 99.6 2.7E-15 5.8E-20 151.5 10.6 202 50-326 15-223 (239)
51 TIGR03522 GldA_ABC_ATP gliding 99.6 3.9E-15 8.3E-20 155.9 12.1 196 50-327 15-219 (301)
52 cd03269 ABC_putative_ATPase Th 99.6 4.9E-15 1.1E-19 146.5 12.0 188 50-318 13-206 (210)
53 cd03263 ABC_subfamily_A The AB 99.6 5.2E-15 1.1E-19 147.3 12.2 192 50-322 15-214 (220)
54 TIGR02211 LolD_lipo_ex lipopro 99.6 3.1E-15 6.7E-20 149.0 10.4 171 50-299 18-200 (221)
55 COG4181 Predicted ABC-type tra 99.6 5.8E-15 1.3E-19 140.3 11.6 206 33-318 6-224 (228)
56 cd03258 ABC_MetN_methionine_tr 99.6 4.2E-15 9.1E-20 149.3 11.4 195 51-324 19-225 (233)
57 PRK11831 putative ABC transpor 99.6 5.9E-15 1.3E-19 152.0 12.4 213 32-327 6-231 (269)
58 cd03301 ABC_MalK_N The N-termi 99.6 6E-15 1.3E-19 146.1 11.6 190 50-318 13-209 (213)
59 PRK09536 btuD corrinoid ABC tr 99.6 3.7E-15 8E-20 161.9 10.9 225 33-337 3-236 (402)
60 cd03226 ABC_cobalt_CbiO_domain 99.6 2.9E-15 6.2E-20 147.8 9.1 156 50-287 13-173 (205)
61 PRK10584 putative ABC transpor 99.6 5.3E-15 1.1E-19 148.1 11.0 175 32-287 5-193 (228)
62 cd03266 ABC_NatA_sodium_export 99.6 6.1E-15 1.3E-19 146.6 11.2 189 51-318 19-214 (218)
63 TIGR02673 FtsE cell division A 99.6 8E-15 1.7E-19 145.3 11.7 159 50-287 15-184 (214)
64 cd03219 ABC_Mj1267_LivG_branch 99.6 5.6E-15 1.2E-19 148.6 10.6 205 50-324 13-227 (236)
65 TIGR03864 PQQ_ABC_ATP ABC tran 99.6 9.6E-15 2.1E-19 147.2 12.1 198 50-327 14-219 (236)
66 cd03294 ABC_Pro_Gly_Bertaine T 99.6 6.6E-15 1.4E-19 151.7 11.1 200 49-327 36-248 (269)
67 cd03224 ABC_TM1139_LivF_branch 99.6 1.5E-14 3.2E-19 144.0 13.1 194 50-323 13-215 (222)
68 cd03268 ABC_BcrA_bacitracin_re 99.6 7.9E-15 1.7E-19 144.8 10.8 186 50-318 13-204 (208)
69 COG0410 LivF ABC-type branched 99.6 6.1E-15 1.3E-19 146.4 9.9 213 43-334 9-231 (237)
70 COG4555 NatA ABC-type Na+ tran 99.6 1.1E-14 2.4E-19 141.6 11.4 200 49-327 14-220 (245)
71 cd03225 ABC_cobalt_CbiO_domain 99.6 1.1E-14 2.5E-19 143.9 11.8 171 50-299 14-192 (211)
72 PRK13548 hmuV hemin importer A 99.6 1.3E-14 2.8E-19 148.6 12.5 202 50-329 15-230 (258)
73 PRK13637 cbiO cobalt transport 99.6 5.1E-15 1.1E-19 154.0 9.3 201 50-328 20-233 (287)
74 PRK10070 glycine betaine trans 99.6 7.2E-15 1.6E-19 159.5 10.8 199 51-328 42-253 (400)
75 PRK11248 tauB taurine transpor 99.6 1.1E-14 2.4E-19 148.9 11.6 188 50-318 14-209 (255)
76 TIGR02315 ABC_phnC phosphonate 99.6 9.4E-15 2E-19 147.6 10.9 205 50-326 15-232 (243)
77 PRK13650 cbiO cobalt transport 99.6 5.1E-15 1.1E-19 153.3 9.2 201 50-328 20-228 (279)
78 PRK13638 cbiO cobalt transport 99.6 2.7E-14 5.9E-19 147.1 14.4 200 50-328 14-224 (271)
79 cd03256 ABC_PhnC_transporter A 99.6 9.7E-15 2.1E-19 147.2 10.7 205 50-326 14-231 (241)
80 PRK13647 cbiO cobalt transport 99.6 1E-14 2.2E-19 150.8 11.1 196 50-324 18-222 (274)
81 TIGR03411 urea_trans_UrtD urea 99.6 2.3E-14 5E-19 144.8 13.3 220 32-328 1-230 (242)
82 PRK15079 oligopeptide ABC tran 99.6 1.3E-14 2.7E-19 154.2 11.6 220 32-327 7-249 (331)
83 PRK13635 cbiO cobalt transport 99.6 1.1E-14 2.4E-19 150.9 10.9 215 33-327 5-227 (279)
84 PRK13634 cbiO cobalt transport 99.6 6.2E-15 1.3E-19 153.6 8.8 200 50-328 20-234 (290)
85 TIGR03740 galliderm_ABC gallid 99.6 1.7E-14 3.7E-19 144.1 11.5 191 50-324 13-208 (223)
86 cd03292 ABC_FtsE_transporter F 99.6 1.6E-14 3.5E-19 143.0 11.1 158 50-286 14-182 (214)
87 PRK13648 cbiO cobalt transport 99.6 1.4E-14 3.1E-19 149.1 10.7 217 30-327 4-229 (269)
88 PRK13651 cobalt transporter AT 99.6 8.9E-15 1.9E-19 153.6 9.3 199 51-329 21-254 (305)
89 PRK13633 cobalt transporter AT 99.6 1E-14 2.2E-19 151.2 9.5 201 50-328 23-232 (280)
90 cd03295 ABC_OpuCA_Osmoprotecti 99.6 1.9E-14 4.1E-19 145.6 11.3 196 50-324 14-220 (242)
91 COG4525 TauB ABC-type taurine 99.6 3.3E-14 7E-19 137.8 12.2 158 50-285 18-180 (259)
92 cd03264 ABC_drug_resistance_li 99.6 1.9E-14 4.2E-19 142.4 11.0 188 50-318 13-207 (211)
93 PRK11264 putative amino-acid A 99.6 2.4E-14 5.2E-19 145.4 12.0 198 50-326 16-230 (250)
94 PRK13643 cbiO cobalt transport 99.5 1.1E-14 2.4E-19 151.6 9.6 198 51-328 20-232 (288)
95 PRK09493 glnQ glutamine ABC tr 99.5 2.7E-14 5.9E-19 144.2 12.1 199 50-327 14-223 (240)
96 COG4604 CeuD ABC-type enteroch 99.5 5.1E-15 1.1E-19 143.5 6.4 210 48-337 12-233 (252)
97 cd03235 ABC_Metallic_Cations A 99.5 1.1E-14 2.5E-19 144.2 9.1 174 50-299 12-190 (213)
98 PRK13646 cbiO cobalt transport 99.5 1E-14 2.2E-19 151.7 9.0 200 50-328 20-234 (286)
99 TIGR03410 urea_trans_UrtE urea 99.5 2.1E-14 4.4E-19 144.0 10.8 196 50-325 13-217 (230)
100 PRK14242 phosphate transporter 99.5 2.2E-14 4.8E-19 145.9 11.1 218 32-327 5-235 (253)
101 PRK10908 cell division protein 99.5 2.3E-14 5E-19 143.0 11.1 189 50-318 15-215 (222)
102 PRK11300 livG leucine/isoleuci 99.5 4.7E-14 1E-18 143.6 13.4 228 33-328 5-242 (255)
103 PRK13632 cbiO cobalt transport 99.5 2.4E-14 5.3E-19 147.5 11.4 214 32-326 6-228 (271)
104 cd03257 ABC_NikE_OppD_transpor 99.5 2.1E-14 4.6E-19 143.4 10.6 192 51-318 19-224 (228)
105 cd03260 ABC_PstB_phosphate_tra 99.5 1.4E-14 3E-19 145.0 9.0 193 50-318 13-218 (227)
106 PRK14273 phosphate ABC transpo 99.5 2.9E-14 6.4E-19 145.2 11.4 223 30-328 4-237 (254)
107 PRK13549 xylose transporter AT 99.5 2.4E-14 5.2E-19 160.1 11.7 211 32-323 4-226 (506)
108 cd03262 ABC_HisP_GlnQ_permease 99.5 3.1E-14 6.7E-19 140.9 11.2 160 50-287 13-182 (213)
109 PRK13636 cbiO cobalt transport 99.5 2.5E-14 5.3E-19 148.6 10.5 216 32-328 4-230 (283)
110 TIGR00972 3a0107s01c2 phosphat 99.5 2.6E-14 5.6E-19 145.0 10.4 201 50-327 14-230 (247)
111 TIGR03608 L_ocin_972_ABC putat 99.5 6.8E-14 1.5E-18 137.7 13.0 159 50-287 11-181 (206)
112 PRK13631 cbiO cobalt transport 99.5 3E-14 6.5E-19 150.6 11.1 215 32-328 20-264 (320)
113 TIGR01166 cbiO cobalt transpor 99.5 6.8E-14 1.5E-18 136.4 12.8 158 51-286 6-173 (190)
114 cd03267 ABC_NatA_like Similar 99.5 3.8E-14 8.2E-19 143.2 11.2 192 49-318 33-232 (236)
115 PRK11247 ssuB aliphatic sulfon 99.5 1.8E-14 3.9E-19 147.8 8.9 199 32-320 11-214 (257)
116 PRK11308 dppF dipeptide transp 99.5 3.4E-14 7.4E-19 150.6 11.3 219 32-328 4-243 (327)
117 PRK13640 cbiO cobalt transport 99.5 3.6E-14 7.9E-19 147.2 11.2 200 50-328 20-231 (282)
118 PRK10261 glutathione transport 99.5 3.3E-14 7.2E-19 162.8 11.9 220 32-328 312-552 (623)
119 PRK13652 cbiO cobalt transport 99.5 3.3E-14 7.2E-19 147.1 10.6 200 51-328 18-226 (277)
120 COG1123 ATPase components of v 99.5 4.4E-14 9.5E-19 156.1 12.1 224 30-328 277-518 (539)
121 PRK10762 D-ribose transporter 99.5 2.8E-14 6.1E-19 159.3 10.8 210 32-321 3-222 (501)
122 TIGR03415 ABC_choXWV_ATP choli 99.5 1E-14 2.2E-19 157.3 7.0 202 48-328 35-253 (382)
123 COG2274 SunT ABC-type bacterio 99.5 2.8E-14 6E-19 164.2 10.9 215 40-330 476-697 (709)
124 PRK13644 cbiO cobalt transport 99.5 4.3E-14 9.4E-19 146.0 11.3 198 50-328 15-223 (274)
125 PRK10895 lipopolysaccharide AB 99.5 4.9E-14 1.1E-18 142.4 11.4 198 50-327 16-224 (241)
126 PRK13543 cytochrome c biogenes 99.5 1.8E-13 3.9E-18 136.2 15.2 170 32-287 10-184 (214)
127 PRK15093 antimicrobial peptide 99.5 4.4E-14 9.5E-19 149.9 11.3 229 32-327 2-246 (330)
128 PRK14241 phosphate transporter 99.5 6.5E-14 1.4E-18 143.1 12.1 203 50-327 17-240 (258)
129 TIGR01184 ntrCD nitrate transp 99.5 5.9E-14 1.3E-18 141.2 11.4 193 53-324 1-199 (230)
130 PRK13649 cbiO cobalt transport 99.5 3.7E-14 8.1E-19 146.7 10.2 197 51-327 21-232 (280)
131 COG4136 ABC-type uncharacteriz 99.5 2.3E-14 5E-19 133.7 7.6 176 48-300 13-194 (213)
132 PRK09984 phosphonate/organopho 99.5 5.7E-14 1.2E-18 143.9 11.3 220 32-326 3-239 (262)
133 PRK11614 livF leucine/isoleuci 99.5 1.1E-13 2.4E-18 139.5 13.1 213 32-328 4-225 (237)
134 COG4619 ABC-type uncharacteriz 99.5 1.4E-14 3.1E-19 137.3 6.1 173 48-300 14-193 (223)
135 PRK11144 modC molybdate transp 99.5 3.4E-14 7.3E-19 152.1 9.8 192 55-330 16-219 (352)
136 TIGR02142 modC_ABC molybdenum 99.5 5.5E-14 1.2E-18 150.6 11.4 193 55-328 15-220 (354)
137 COG1137 YhbG ABC-type (unclass 99.5 7.3E-15 1.6E-19 142.8 4.1 208 48-335 15-234 (243)
138 PRK15112 antimicrobial peptide 99.5 7E-14 1.5E-18 143.8 11.6 201 50-326 26-236 (267)
139 PRK14247 phosphate ABC transpo 99.5 9.1E-14 2E-18 141.2 12.3 203 50-327 16-232 (250)
140 PRK13642 cbiO cobalt transport 99.5 4.3E-14 9.4E-19 146.2 10.0 201 50-328 20-228 (277)
141 PRK11022 dppD dipeptide transp 99.5 5.3E-14 1.1E-18 149.1 10.7 223 33-328 3-242 (326)
142 PRK09700 D-allose transporter 99.5 5.3E-14 1.2E-18 157.4 11.2 218 32-326 4-231 (510)
143 PRK10253 iron-enterobactin tra 99.5 6.5E-14 1.4E-18 143.8 11.0 203 50-327 20-231 (265)
144 PRK13645 cbiO cobalt transport 99.5 4.8E-14 1E-18 146.7 10.1 200 51-328 25-239 (289)
145 PRK15439 autoinducer 2 ABC tra 99.5 5.5E-14 1.2E-18 157.4 11.3 208 32-327 10-227 (510)
146 PRK11231 fecE iron-dicitrate t 99.5 7.8E-14 1.7E-18 142.3 11.2 203 50-328 15-226 (255)
147 cd03298 ABC_ThiQ_thiamine_tran 99.5 5.3E-14 1.2E-18 139.2 9.6 184 55-318 16-207 (211)
148 PRK10575 iron-hydroxamate tran 99.5 7.4E-14 1.6E-18 143.4 10.8 219 32-329 10-237 (265)
149 PRK13641 cbiO cobalt transport 99.5 5E-14 1.1E-18 146.5 9.6 200 50-328 20-233 (287)
150 COG4152 ABC-type uncharacteriz 99.5 1.6E-13 3.4E-18 137.1 12.3 211 34-329 3-219 (300)
151 PRK09473 oppD oligopeptide tra 99.5 1.1E-13 2.3E-18 147.1 11.7 219 32-328 11-250 (330)
152 COG4598 HisP ABC-type histidin 99.5 4.3E-14 9.3E-19 135.3 7.7 226 34-330 7-242 (256)
153 TIGR01978 sufC FeS assembly AT 99.5 1.5E-13 3.2E-18 138.8 12.0 204 50-324 13-229 (243)
154 PRK14239 phosphate transporter 99.5 1.1E-13 2.4E-18 140.6 11.1 218 32-328 4-235 (252)
155 TIGR02770 nickel_nikD nickel i 99.5 8.6E-14 1.9E-18 139.9 10.1 201 52-327 1-213 (230)
156 PRK10619 histidine/lysine/argi 99.5 8.5E-14 1.8E-18 142.2 10.2 197 50-325 18-237 (257)
157 PRK10261 glutathione transport 99.5 1.3E-13 2.8E-18 158.0 12.8 219 31-327 10-256 (623)
158 TIGR03269 met_CoM_red_A2 methy 99.5 1.2E-13 2.5E-18 155.0 12.2 198 50-324 13-253 (520)
159 PRK11124 artP arginine transpo 99.5 1.1E-13 2.5E-18 139.8 10.9 196 50-324 15-225 (242)
160 TIGR03005 ectoine_ehuA ectoine 99.5 1.2E-13 2.5E-18 140.7 11.1 199 50-326 13-233 (252)
161 PRK14248 phosphate ABC transpo 99.5 1.4E-13 3E-18 141.6 11.6 221 31-327 19-250 (268)
162 PRK10418 nikD nickel transport 99.5 2.1E-13 4.5E-18 139.2 12.8 210 33-327 4-228 (254)
163 PRK15134 microcin C ABC transp 99.5 1.2E-13 2.5E-18 155.4 12.0 217 32-327 274-513 (529)
164 PRK10771 thiQ thiamine transpo 99.5 1.1E-13 2.4E-18 139.1 10.7 196 55-329 17-219 (232)
165 PRK14251 phosphate ABC transpo 99.5 1.2E-13 2.6E-18 140.4 10.9 215 33-327 4-233 (251)
166 cd03300 ABC_PotA_N PotA is an 99.5 1.9E-13 4E-18 137.6 12.1 193 50-323 13-214 (232)
167 TIGR03873 F420-0_ABC_ATP propo 99.5 2.1E-13 4.6E-18 139.2 12.6 203 50-328 14-225 (256)
168 TIGR02769 nickel_nikE nickel i 99.5 1.5E-13 3.4E-18 141.1 11.5 201 50-327 24-238 (265)
169 PRK14269 phosphate ABC transpo 99.5 1.3E-13 2.9E-18 139.9 10.9 205 50-328 15-229 (246)
170 PRK14274 phosphate ABC transpo 99.5 9.8E-14 2.1E-18 141.9 9.9 220 29-328 8-242 (259)
171 PRK11701 phnK phosphonate C-P 99.5 2.2E-13 4.8E-18 139.2 12.5 214 32-326 5-238 (258)
172 PRK14267 phosphate ABC transpo 99.5 1.6E-13 3.5E-18 139.6 11.4 215 33-327 4-235 (253)
173 PRK14237 phosphate transporter 99.5 1.6E-13 3.4E-18 141.3 11.4 225 28-328 15-250 (267)
174 PRK14236 phosphate transporter 99.5 1.5E-13 3.1E-18 141.9 11.1 229 19-327 11-254 (272)
175 PRK14268 phosphate ABC transpo 99.5 1.9E-13 4.1E-18 139.8 11.7 217 31-327 10-240 (258)
176 TIGR01277 thiQ thiamine ABC tr 99.5 1.8E-13 3.9E-18 135.9 11.2 188 52-318 13-207 (213)
177 PRK13538 cytochrome c biogenes 99.5 3.8E-13 8.2E-18 132.8 13.2 156 50-286 14-175 (204)
178 cd03297 ABC_ModC_molybdenum_tr 99.5 1.9E-13 4.1E-18 135.7 11.2 183 55-318 16-210 (214)
179 PRK13639 cbiO cobalt transport 99.5 1.6E-13 3.6E-18 141.8 11.0 199 51-328 16-225 (275)
180 PRK14250 phosphate ABC transpo 99.5 1E-13 2.3E-18 140.3 9.3 196 50-327 16-219 (241)
181 PRK11288 araG L-arabinose tran 99.5 1.5E-13 3.2E-18 153.5 11.2 207 32-319 3-219 (501)
182 PRK10744 pstB phosphate transp 99.5 1.6E-13 3.5E-18 140.5 10.6 203 50-328 26-243 (260)
183 TIGR02323 CP_lyasePhnK phospho 99.5 2.5E-13 5.4E-18 138.3 11.8 212 33-324 3-233 (253)
184 PRK14245 phosphate ABC transpo 99.5 2E-13 4.3E-18 138.8 11.1 205 50-328 16-233 (250)
185 COG4559 ABC-type hemin transpo 99.5 2.1E-13 4.6E-18 133.7 10.7 217 43-336 7-237 (259)
186 TIGR02982 heterocyst_DevA ABC 99.5 9.4E-14 2E-18 138.6 8.3 173 50-300 18-201 (220)
187 PRK10247 putative ABC transpor 99.5 4.9E-13 1.1E-17 134.0 13.5 170 32-287 6-184 (225)
188 PRK14270 phosphate ABC transpo 99.5 2.3E-13 5E-18 138.4 11.3 216 32-327 3-233 (251)
189 cd03234 ABCG_White The White s 99.5 1.7E-13 3.7E-18 137.3 10.0 192 50-318 20-222 (226)
190 TIGR00968 3a0106s01 sulfate AB 99.5 3.2E-13 6.9E-18 136.5 11.9 199 50-327 13-218 (237)
191 PRK13547 hmuV hemin importer A 99.5 2.1E-13 4.6E-18 141.0 10.7 207 49-329 13-244 (272)
192 PRK10982 galactose/methyl gala 99.5 1.8E-13 3.9E-18 152.4 10.7 198 50-324 11-218 (491)
193 PRK14258 phosphate ABC transpo 99.5 3.5E-13 7.5E-18 138.2 12.0 216 30-328 4-244 (261)
194 TIGR03797 NHPM_micro_ABC2 NHPM 99.5 1.1E-13 2.4E-18 160.1 9.3 207 42-327 458-671 (686)
195 PRK11819 putative ABC transpor 99.5 1.8E-12 3.9E-17 146.7 18.8 234 31-326 4-247 (556)
196 PRK14238 phosphate transporter 99.5 1.8E-13 3.9E-18 141.2 9.8 218 31-328 22-254 (271)
197 PRK14255 phosphate ABC transpo 99.5 2.7E-13 5.8E-18 137.9 10.8 219 30-328 2-235 (252)
198 PRK14261 phosphate ABC transpo 99.5 3.6E-13 7.9E-18 137.1 11.8 218 32-327 5-235 (253)
199 TIGR01257 rim_protein retinal- 99.5 1.8E-13 3.9E-18 170.9 11.3 197 50-327 1952-2157(2272)
200 PRK15134 microcin C ABC transp 99.5 2.8E-13 6E-18 152.3 11.9 219 32-327 4-244 (529)
201 PRK14235 phosphate transporter 99.5 2.6E-13 5.6E-18 139.6 10.6 216 32-327 18-249 (267)
202 PRK14256 phosphate ABC transpo 99.5 4E-13 8.7E-18 136.7 11.7 203 50-327 17-234 (252)
203 cd03233 ABC_PDR_domain1 The pl 99.4 2.3E-13 4.9E-18 134.4 9.6 170 48-318 18-198 (202)
204 PRK11174 cysteine/glutathione 99.4 1.8E-13 3.9E-18 155.5 10.1 200 49-327 362-570 (588)
205 TIGR01189 ccmA heme ABC export 99.4 8.1E-13 1.8E-17 129.7 13.4 156 49-286 12-173 (198)
206 PRK11176 lipid transporter ATP 99.4 1.5E-13 3.3E-18 155.8 9.4 209 42-327 348-565 (582)
207 PRK10790 putative multidrug tr 99.4 1.8E-13 3.9E-18 155.7 9.8 202 50-328 354-562 (592)
208 TIGR02868 CydC thiol reductant 99.4 2.7E-13 5.9E-18 152.2 11.1 170 43-287 342-517 (529)
209 PRK14275 phosphate ABC transpo 99.4 4E-13 8.6E-18 139.8 11.5 220 30-327 36-268 (286)
210 PRK14262 phosphate ABC transpo 99.4 4.5E-13 9.7E-18 136.1 11.7 213 33-326 3-231 (250)
211 PRK14240 phosphate transporter 99.4 3E-13 6.4E-18 137.4 10.3 202 50-327 16-232 (250)
212 PRK14259 phosphate ABC transpo 99.4 3.3E-13 7.1E-18 139.1 10.7 207 32-319 12-232 (269)
213 COG1101 PhnK ABC-type uncharac 99.4 2.5E-13 5.4E-18 133.5 9.2 188 43-301 12-209 (263)
214 PRK14254 phosphate ABC transpo 99.4 5.4E-13 1.2E-17 138.8 12.3 214 30-326 36-266 (285)
215 PRK09700 D-allose transporter 99.4 2.5E-13 5.4E-18 152.0 10.2 212 32-319 264-488 (510)
216 TIGR03375 type_I_sec_LssB type 99.4 1.8E-13 3.9E-18 158.6 9.1 209 42-326 470-685 (694)
217 PRK14249 phosphate ABC transpo 99.4 5.3E-13 1.1E-17 135.8 11.4 201 50-327 17-233 (251)
218 TIGR01257 rim_protein retinal- 99.4 3.7E-13 8E-18 168.2 12.2 197 49-326 942-1146(2272)
219 PRK13539 cytochrome c biogenes 99.4 1.1E-12 2.3E-17 130.0 13.1 155 50-286 15-173 (207)
220 PRK13540 cytochrome c biogenes 99.4 1E-12 2.3E-17 129.2 13.0 154 50-286 14-173 (200)
221 TIGR03269 met_CoM_red_A2 methy 99.4 3.7E-13 8E-18 150.9 11.0 218 32-323 278-511 (520)
222 PRK14271 phosphate ABC transpo 99.4 9.9E-13 2.2E-17 136.1 13.0 218 30-327 18-249 (276)
223 TIGR03796 NHPM_micro_ABC1 NHPM 99.4 1.6E-13 3.6E-18 159.2 8.0 208 42-327 484-698 (710)
224 PRK13549 xylose transporter AT 99.4 4.2E-13 9.1E-18 150.1 10.9 218 32-322 258-487 (506)
225 cd03299 ABC_ModC_like Archeal 99.4 7.5E-13 1.6E-17 133.6 11.7 193 52-323 14-213 (235)
226 PRK10419 nikE nickel transport 99.4 6.1E-13 1.3E-17 137.0 11.2 200 50-326 25-238 (268)
227 COG1134 TagH ABC-type polysacc 99.4 1.2E-12 2.6E-17 131.2 12.9 203 47-346 37-244 (249)
228 PRK14272 phosphate ABC transpo 99.4 7.8E-13 1.7E-17 134.4 11.8 202 50-327 17-234 (252)
229 TIGR02324 CP_lyasePhnL phospho 99.4 1.9E-12 4.1E-17 129.3 14.3 158 50-286 21-195 (224)
230 PRK15056 manganese/iron transp 99.4 5.5E-13 1.2E-17 137.6 10.6 204 50-328 20-229 (272)
231 TIGR02203 MsbA_lipidA lipid A 99.4 3.5E-13 7.5E-18 152.4 9.8 207 43-327 338-554 (571)
232 PRK14253 phosphate ABC transpo 99.4 5.4E-13 1.2E-17 135.5 10.2 205 50-326 16-230 (249)
233 TIGR02633 xylG D-xylose ABC tr 99.4 5.8E-13 1.3E-17 148.6 11.3 196 50-321 14-222 (500)
234 cd03215 ABC_Carb_Monos_II This 99.4 7.7E-13 1.7E-17 128.4 10.8 62 52-125 15-84 (182)
235 TIGR01187 potA spermidine/putr 99.4 3.1E-13 6.7E-18 143.2 8.6 185 65-328 1-189 (325)
236 COG1123 ATPase components of v 99.4 7.4E-13 1.6E-17 146.5 11.8 225 32-329 4-244 (539)
237 COG4988 CydD ABC-type transpor 99.4 8.7E-13 1.9E-17 145.6 12.0 202 49-327 333-541 (559)
238 TIGR03719 ABC_ABC_ChvD ATP-bin 99.4 4.4E-12 9.6E-17 143.4 17.8 234 32-328 3-247 (552)
239 cd03231 ABC_CcmA_heme_exporter 99.4 1.6E-12 3.5E-17 128.1 12.4 153 50-286 13-171 (201)
240 PRK14257 phosphate ABC transpo 99.4 8.7E-13 1.9E-17 140.0 11.2 220 33-329 80-313 (329)
241 PRK14244 phosphate ABC transpo 99.4 1.1E-12 2.3E-17 133.5 11.4 199 50-327 18-235 (251)
242 COG0488 Uup ATPase components 99.4 2.8E-11 6.2E-16 135.4 23.4 203 48-320 14-230 (530)
243 PRK03695 vitamin B12-transport 99.4 7.4E-13 1.6E-17 134.9 9.9 196 52-328 11-221 (248)
244 PRK14246 phosphate ABC transpo 99.4 1.1E-12 2.4E-17 134.3 11.2 217 31-327 8-239 (257)
245 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.4 6.8E-13 1.5E-17 133.1 9.4 181 49-318 34-220 (224)
246 PRK14243 phosphate transporter 99.4 8.3E-13 1.8E-17 135.7 10.2 218 32-328 9-247 (264)
247 TIGR02633 xylG D-xylose ABC tr 99.4 8E-13 1.7E-17 147.5 10.8 216 32-320 256-483 (500)
248 PRK10762 D-ribose transporter 99.4 8.4E-13 1.8E-17 147.5 10.9 202 51-323 266-478 (501)
249 COG0444 DppD ABC-type dipeptid 99.4 1E-12 2.2E-17 136.6 10.5 226 34-329 2-243 (316)
250 PRK14265 phosphate ABC transpo 99.4 9.8E-13 2.1E-17 136.0 10.4 216 32-328 19-257 (274)
251 cd03251 ABCC_MsbA MsbA is an e 99.4 5.9E-13 1.3E-17 133.7 8.5 196 51-326 16-222 (234)
252 cd03245 ABCC_bacteriocin_expor 99.4 4.7E-13 1E-17 133.2 7.5 164 50-287 17-187 (220)
253 COG1129 MglA ABC-type sugar tr 99.4 2.2E-12 4.8E-17 141.8 13.5 206 31-317 6-222 (500)
254 PRK11288 araG L-arabinose tran 99.4 7.7E-13 1.7E-17 147.8 10.1 201 51-322 267-478 (501)
255 PRK13657 cyclic beta-1,2-gluca 99.4 7.8E-13 1.7E-17 150.4 10.2 201 50-326 348-555 (588)
256 TIGR01193 bacteriocin_ABC ABC- 99.4 4E-13 8.6E-18 156.0 7.9 209 42-327 480-695 (708)
257 PRK09544 znuC high-affinity zi 99.4 1.5E-12 3.4E-17 133.0 11.2 199 33-328 4-208 (251)
258 PRK15064 ABC transporter ATP-b 99.4 5.5E-12 1.2E-16 141.9 16.6 214 50-327 14-240 (530)
259 COG4175 ProV ABC-type proline/ 99.4 2.7E-13 5.9E-18 139.6 5.2 199 53-331 44-256 (386)
260 PRK10938 putative molybdenum t 99.4 7.8E-13 1.7E-17 147.2 9.2 193 50-327 16-222 (490)
261 PRK14260 phosphate ABC transpo 99.4 3.6E-12 7.8E-17 130.5 13.3 201 50-327 20-241 (259)
262 PRK15439 autoinducer 2 ABC tra 99.4 1E-12 2.3E-17 147.1 9.9 198 52-323 278-486 (510)
263 PRK11160 cysteine/glutathione 99.4 7.9E-13 1.7E-17 150.1 9.0 207 42-327 345-560 (574)
264 cd03253 ABCC_ATM1_transporter 99.4 1.3E-12 2.9E-17 131.4 9.2 200 50-326 14-221 (236)
265 PLN03211 ABC transporter G-25; 99.4 2.1E-12 4.5E-17 148.7 12.0 203 49-324 80-291 (659)
266 cd03252 ABCC_Hemolysin The ABC 99.4 1.5E-12 3.2E-17 131.2 9.0 198 50-327 15-223 (237)
267 COG4674 Uncharacterized ABC-ty 99.4 9.9E-13 2.2E-17 127.6 7.3 225 32-333 4-239 (249)
268 TIGR02857 CydD thiol reductant 99.4 2.3E-12 5E-17 144.6 11.5 176 50-301 335-517 (529)
269 cd03254 ABCC_Glucan_exporter_l 99.4 1.4E-12 3E-17 130.6 8.7 197 51-324 17-221 (229)
270 cd03248 ABCC_TAP TAP, the Tran 99.4 9E-13 1.9E-17 131.8 6.9 178 31-287 9-197 (226)
271 TIGR00958 3a01208 Conjugate Tr 99.4 8.1E-13 1.7E-17 153.6 7.2 200 50-327 494-700 (711)
272 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.3 1E-12 2.2E-17 132.5 6.8 197 51-324 17-221 (238)
273 TIGR01846 type_I_sec_HlyB type 99.3 1.4E-12 2.9E-17 151.3 8.8 210 42-327 462-678 (694)
274 PRK14266 phosphate ABC transpo 99.3 3E-12 6.6E-17 130.1 10.2 202 50-327 16-232 (250)
275 PRK14263 phosphate ABC transpo 99.3 4.2E-12 9.1E-17 130.4 11.3 202 50-328 21-244 (261)
276 TIGR02204 MsbA_rel ABC transpo 99.3 1.5E-12 3.3E-17 147.5 8.7 201 50-326 353-560 (576)
277 cd03230 ABC_DR_subfamily_A Thi 99.3 2.5E-12 5.4E-17 123.8 8.8 63 51-125 14-82 (173)
278 CHL00131 ycf16 sulfate ABC tra 99.3 4.3E-12 9.4E-17 129.0 11.0 204 50-324 20-236 (252)
279 PRK10938 putative molybdenum t 99.3 2.9E-12 6.3E-17 142.7 10.3 210 32-318 259-481 (490)
280 COG4172 ABC-type uncharacteriz 99.3 5.3E-12 1.1E-16 133.7 11.2 224 30-329 273-516 (534)
281 PRK13541 cytochrome c biogenes 99.3 1.2E-11 2.6E-16 121.2 13.2 149 53-285 16-168 (195)
282 COG4987 CydC ABC-type transpor 99.3 1.9E-12 4.1E-17 141.4 8.0 209 42-326 343-558 (573)
283 PRK10789 putative multidrug tr 99.3 2.1E-12 4.6E-17 146.4 8.8 208 42-327 320-536 (569)
284 cd03289 ABCC_CFTR2 The CFTR su 99.3 5.2E-12 1.1E-16 130.9 10.8 202 49-328 16-224 (275)
285 cd03244 ABCC_MRP_domain2 Domai 99.3 7.3E-12 1.6E-16 124.7 11.1 163 50-287 17-186 (221)
286 TIGR01842 type_I_sec_PrtD type 99.3 4.1E-12 8.8E-17 143.3 10.1 207 43-324 324-537 (544)
287 PRK14252 phosphate ABC transpo 99.3 6.9E-12 1.5E-16 128.8 10.5 215 32-326 15-246 (265)
288 PRK10982 galactose/methyl gala 99.3 3.4E-12 7.3E-17 142.2 8.9 211 32-319 249-470 (491)
289 PRK13546 teichoic acids export 99.3 8E-12 1.7E-16 128.7 11.0 187 50-326 37-229 (264)
290 cd03229 ABC_Class3 This class 99.3 2.6E-12 5.7E-17 124.2 6.9 64 50-125 13-85 (178)
291 cd03369 ABCC_NFT1 Domain 2 of 99.3 3.6E-12 7.9E-17 125.9 8.0 172 51-318 22-201 (207)
292 COG4148 ModC ABC-type molybdat 99.3 4E-12 8.7E-17 129.2 8.3 186 61-330 25-219 (352)
293 cd03290 ABCC_SUR1_N The SUR do 99.3 8.4E-12 1.8E-16 124.2 10.5 154 50-275 14-178 (218)
294 TIGR03771 anch_rpt_ABC anchore 99.3 8.2E-12 1.8E-16 125.1 10.4 190 61-327 7-199 (223)
295 PRK15177 Vi polysaccharide exp 99.3 9.8E-12 2.1E-16 123.9 10.5 183 52-327 2-190 (213)
296 COG1132 MdlB ABC-type multidru 99.3 3.4E-12 7.5E-17 144.6 7.8 203 49-328 341-551 (567)
297 TIGR01192 chvA glucan exporter 99.3 5.2E-12 1.1E-16 143.8 9.2 202 50-327 348-556 (585)
298 PRK09580 sufC cysteine desulfu 99.3 1.4E-11 2.9E-16 124.9 11.3 203 50-323 14-229 (248)
299 PRK14264 phosphate ABC transpo 99.3 1.3E-11 2.8E-16 129.6 11.4 221 33-327 45-287 (305)
300 cd03213 ABCG_EPDR ABCG transpo 99.3 5.8E-12 1.3E-16 123.6 7.8 77 50-141 22-104 (194)
301 TIGR00955 3a01204 The Eye Pigm 99.3 8.7E-12 1.9E-16 142.8 10.4 204 49-324 37-251 (617)
302 PLN03232 ABC transporter C fam 99.3 3.5E-12 7.7E-17 158.6 7.6 210 42-328 1241-1457(1495)
303 PRK15064 ABC transporter ATP-b 99.3 9.3E-12 2E-16 140.1 10.2 197 33-328 319-524 (530)
304 PRK13545 tagH teichoic acids e 99.3 1.2E-11 2.6E-16 137.3 10.2 188 50-327 37-230 (549)
305 cd03237 ABC_RNaseL_inhibitor_d 99.3 2.7E-11 5.8E-16 123.6 12.0 162 61-314 26-190 (246)
306 PLN03130 ABC transporter C fam 99.3 6.8E-12 1.5E-16 156.7 9.1 209 42-328 1244-1460(1622)
307 TIGR00956 3a01205 Pleiotropic 99.3 2.1E-11 4.4E-16 150.7 13.0 164 49-286 775-948 (1394)
308 KOG0055 Multidrug/pheromone ex 99.3 7.3E-12 1.6E-16 148.0 8.5 203 49-328 365-575 (1228)
309 PRK10535 macrolide transporter 99.3 1.5E-11 3.2E-16 141.7 10.8 175 33-286 4-190 (648)
310 PRK11147 ABC transporter ATPas 99.3 1.5E-11 3.3E-16 141.3 10.9 200 32-327 318-526 (635)
311 cd03246 ABCC_Protease_Secretio 99.3 8.2E-12 1.8E-16 120.2 7.2 64 50-125 15-85 (173)
312 TIGR03719 ABC_ABC_ChvD ATP-bin 99.3 2.9E-11 6.2E-16 136.8 12.7 191 32-318 321-519 (552)
313 cd03232 ABC_PDR_domain2 The pl 99.3 2.7E-11 5.8E-16 118.7 10.9 79 50-142 20-102 (192)
314 PRK10636 putative ABC transpor 99.3 1.1E-10 2.4E-15 134.3 17.6 212 48-325 12-232 (638)
315 PRK11147 ABC transporter ATPas 99.3 1.1E-10 2.3E-15 134.3 17.2 231 33-327 3-241 (635)
316 PRK11819 putative ABC transpor 99.3 2.9E-11 6.3E-16 136.9 12.3 191 32-318 323-521 (556)
317 KOG0058 Peptide exporter, ABC 99.2 1.1E-11 2.4E-16 139.6 8.1 201 49-327 480-689 (716)
318 cd03250 ABCC_MRP_domain1 Domai 99.2 5.3E-11 1.2E-15 117.3 11.9 142 51-274 19-164 (204)
319 KOG0061 Transporter, ABC super 99.2 7.6E-11 1.6E-15 134.8 14.7 173 49-288 42-218 (613)
320 cd03288 ABCC_SUR2 The SUR doma 99.2 3.4E-11 7.4E-16 123.2 10.5 217 31-326 17-240 (257)
321 TIGR01271 CFTR_protein cystic 99.2 3.6E-11 7.8E-16 149.6 12.8 209 42-328 1224-1439(1490)
322 COG4618 ArpD ABC-type protease 99.2 3.4E-11 7.3E-16 130.8 10.8 199 50-324 349-555 (580)
323 PTZ00243 ABC transporter; Prov 99.2 1.4E-11 3.1E-16 153.5 9.0 210 43-328 1316-1532(1560)
324 COG0396 sufC Cysteine desulfur 99.2 4.5E-11 9.7E-16 118.9 10.6 197 50-324 17-229 (251)
325 TIGR00956 3a01205 Pleiotropic 99.2 2E-11 4.3E-16 150.8 9.6 177 49-287 73-256 (1394)
326 PRK13409 putative ATPase RIL; 99.2 4.5E-11 9.8E-16 136.1 11.8 184 32-314 339-528 (590)
327 TIGR00957 MRP_assoc_pro multi 99.2 1.4E-11 3E-16 153.6 8.2 210 42-328 1291-1507(1522)
328 KOG0057 Mitochondrial Fe/S clu 99.2 3.2E-11 6.9E-16 132.0 9.9 201 49-328 364-573 (591)
329 COG3845 ABC-type uncharacteriz 99.2 4.8E-11 1E-15 129.4 10.6 204 33-317 4-217 (501)
330 cd03228 ABCC_MRP_Like The MRP 99.2 5.4E-11 1.2E-15 114.3 9.4 47 51-109 16-66 (171)
331 KOG0065 Pleiotropic drug resis 99.2 3.3E-10 7.1E-15 134.5 17.4 165 48-287 802-977 (1391)
332 PTZ00265 multidrug resistance 99.2 2.7E-11 5.9E-16 150.0 8.8 197 42-301 1172-1419(1466)
333 PRK10636 putative ABC transpor 99.2 6.1E-11 1.3E-15 136.4 10.8 196 32-327 311-515 (638)
334 PLN03140 ABC transporter G fam 99.2 7.9E-11 1.7E-15 145.6 12.3 193 49-287 177-383 (1470)
335 PLN03140 ABC transporter G fam 99.2 7.8E-11 1.7E-15 145.7 12.0 170 49-286 892-1065(1470)
336 cd03291 ABCC_CFTR1 The CFTR su 99.2 7.5E-11 1.6E-15 122.7 10.1 162 26-275 32-197 (282)
337 cd03214 ABC_Iron-Siderophores_ 99.2 1.7E-11 3.7E-16 118.8 5.0 48 50-109 12-63 (180)
338 cd03247 ABCC_cytochrome_bd The 99.2 4.6E-11 9.9E-16 115.5 7.9 47 51-109 16-66 (178)
339 TIGR01194 cyc_pep_trnsptr cycl 99.2 4.3E-11 9.3E-16 135.5 8.8 147 51-276 356-509 (555)
340 COG4608 AppF ABC-type oligopep 99.2 7E-11 1.5E-15 120.5 9.2 186 32-328 3-198 (268)
341 PRK10522 multidrug transporter 99.2 4E-11 8.7E-16 135.4 7.3 187 50-320 336-529 (547)
342 COG4161 ArtP ABC-type arginine 99.2 9.7E-11 2.1E-15 110.8 8.5 200 47-325 12-226 (242)
343 COG1119 ModF ABC-type molybden 99.1 1.6E-10 3.5E-15 116.0 10.0 192 31-299 29-231 (257)
344 PLN03073 ABC transporter F fam 99.1 1.4E-10 3E-15 134.8 11.0 189 32-318 507-702 (718)
345 cd03216 ABC_Carb_Monos_I This 99.1 8.2E-11 1.8E-15 112.4 7.5 48 50-109 13-64 (163)
346 COG4133 CcmA ABC-type transpor 99.1 1.4E-10 3.1E-15 112.2 9.1 164 43-287 8-177 (209)
347 PTZ00265 multidrug resistance 99.1 1.1E-10 2.4E-15 144.7 10.3 79 50-144 398-484 (1466)
348 cd03223 ABCD_peroxisomal_ALDP 99.1 1.4E-10 3.1E-15 111.1 8.7 68 50-141 14-85 (166)
349 cd03217 ABC_FeS_Assembly ABC-t 99.1 9.3E-11 2E-15 115.6 7.5 66 50-125 13-86 (200)
350 COG4586 ABC-type uncharacteriz 99.1 9E-11 2E-15 119.2 7.3 201 48-327 35-244 (325)
351 TIGR00954 3a01203 Peroxysomal 99.1 1.6E-10 3.6E-15 133.3 9.0 157 50-284 465-626 (659)
352 PRK13409 putative ATPase RIL; 99.1 2.7E-10 5.9E-15 129.8 10.0 79 225-315 207-286 (590)
353 PF00005 ABC_tran: ABC transpo 99.1 1.2E-10 2.6E-15 106.9 5.3 72 53-139 1-79 (137)
354 cd03236 ABC_RNaseL_inhibitor_d 99.0 7.9E-10 1.7E-14 113.5 10.6 53 225-287 134-186 (255)
355 KOG0056 Heavy metal exporter H 99.0 2.4E-10 5.3E-15 123.2 5.9 194 20-288 518-722 (790)
356 TIGR00957 MRP_assoc_pro multi 99.0 4.8E-10 1E-14 140.0 9.3 200 43-328 644-849 (1522)
357 COG4167 SapF ABC-type antimicr 99.0 6.4E-10 1.4E-14 107.2 7.5 203 49-328 25-238 (267)
358 PLN03232 ABC transporter C fam 99.0 7.3E-10 1.6E-14 138.2 10.1 200 42-327 621-826 (1495)
359 KOG0059 Lipid exporter ABCA1 a 99.0 1.6E-09 3.4E-14 129.0 12.2 195 52-327 580-785 (885)
360 COG0488 Uup ATPase components 99.0 1.8E-09 4E-14 121.0 11.9 161 31-285 319-484 (530)
361 COG4172 ABC-type uncharacteriz 99.0 3.5E-09 7.6E-14 112.6 12.1 227 30-328 3-246 (534)
362 PLN03130 ABC transporter C fam 99.0 1.1E-09 2.5E-14 137.0 9.6 205 34-327 615-826 (1622)
363 PTZ00243 ABC transporter; Prov 99.0 1.8E-09 3.9E-14 134.9 10.9 192 50-328 673-869 (1560)
364 KOG0055 Multidrug/pheromone ex 99.0 1.1E-09 2.4E-14 130.0 8.2 202 49-328 1002-1212(1228)
365 TIGR01271 CFTR_protein cystic 99.0 1.3E-09 2.7E-14 136.0 9.2 190 51-327 440-634 (1490)
366 PLN03073 ABC transporter F fam 98.9 2.2E-09 4.8E-14 124.8 9.5 98 207-318 319-419 (718)
367 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.9 2.8E-09 6.1E-14 99.9 8.5 44 51-106 14-61 (144)
368 cd03222 ABC_RNaseL_inhibitor T 98.9 3.6E-09 7.8E-14 102.9 9.1 44 50-106 13-60 (177)
369 cd03238 ABC_UvrA The excision 98.9 2.2E-09 4.7E-14 104.4 7.3 34 49-82 7-43 (176)
370 COG4778 PhnL ABC-type phosphon 98.9 4.5E-09 9.7E-14 100.5 7.4 59 36-106 7-72 (235)
371 cd00267 ABC_ATPase ABC (ATP-bi 98.8 5.9E-09 1.3E-13 98.6 6.9 47 51-109 13-63 (157)
372 cd03278 ABC_SMC_barmotin Barmo 98.7 3.7E-08 8.1E-13 97.3 8.5 64 61-127 23-87 (197)
373 KOG0054 Multidrug resistance-a 98.7 5.6E-08 1.2E-12 117.9 10.6 209 41-328 1144-1361(1381)
374 COG4107 PhnK ABC-type phosphon 98.7 2.6E-07 5.6E-12 88.8 12.8 210 30-322 3-234 (258)
375 KOG0927 Predicted transporter 98.7 3.8E-08 8.3E-13 108.0 7.8 163 30-285 386-554 (614)
376 KOG0054 Multidrug resistance-a 98.5 2.2E-07 4.7E-12 112.9 9.3 202 33-328 518-730 (1381)
377 cd03270 ABC_UvrA_I The excisio 98.5 4.8E-07 1.1E-11 91.1 9.4 65 225-300 132-198 (226)
378 KOG0060 Long-chain acyl-CoA tr 98.5 4.3E-07 9.3E-12 100.6 8.8 185 50-310 448-636 (659)
379 cd03273 ABC_SMC2_euk Eukaryoti 98.5 1.9E-07 4.1E-12 95.3 5.7 187 60-300 25-228 (251)
380 COG4615 PvdE ABC-type sideroph 98.4 3.4E-07 7.4E-12 97.4 7.4 47 53-111 339-389 (546)
381 cd03240 ABC_Rad50 The catalyti 98.4 4.4E-07 9.5E-12 90.1 6.7 25 57-81 19-43 (204)
382 KOG0064 Peroxisomal long-chain 98.4 1.9E-06 4.1E-11 94.6 11.3 168 53-300 498-668 (728)
383 cd03279 ABC_sbcCD SbcCD and ot 98.4 3.6E-07 7.9E-12 91.0 5.3 64 226-299 119-191 (213)
384 COG5265 ATM1 ABC-type transpor 98.3 4E-07 8.7E-12 97.7 3.5 160 42-274 269-436 (497)
385 COG4138 BtuD ABC-type cobalami 98.3 3E-06 6.5E-11 81.7 8.9 104 226-337 121-229 (248)
386 KOG0927 Predicted transporter 98.2 1E-05 2.2E-10 89.4 13.1 98 208-317 197-296 (614)
387 cd03271 ABC_UvrA_II The excisi 98.2 1.3E-06 2.7E-11 90.2 5.5 78 212-299 149-230 (261)
388 KOG0062 ATPase component of AB 98.1 4.6E-06 1E-10 91.5 7.7 79 226-318 194-273 (582)
389 cd03272 ABC_SMC3_euk Eukaryoti 98.1 6.3E-06 1.4E-10 83.3 7.7 54 225-287 153-209 (243)
390 cd03274 ABC_SMC4_euk Eukaryoti 98.1 1.8E-06 4E-11 86.3 3.5 64 226-300 123-189 (212)
391 COG4178 ABC-type uncharacteriz 98.1 1.3E-05 2.9E-10 90.6 9.7 181 47-314 403-588 (604)
392 cd00820 PEPCK_HprK Phosphoenol 97.9 1.1E-05 2.3E-10 72.4 4.9 68 51-142 3-77 (107)
393 KOG0066 eIF2-interacting prote 97.9 2.6E-05 5.6E-10 84.1 7.3 50 227-286 701-750 (807)
394 COG1129 MglA ABC-type sugar tr 97.9 5.9E-05 1.3E-09 83.8 10.2 194 52-318 274-479 (500)
395 cd03275 ABC_SMC1_euk Eukaryoti 97.9 2.7E-05 5.8E-10 79.4 6.9 65 226-300 151-218 (247)
396 KOG0062 ATPase component of AB 97.8 2.9E-05 6.2E-10 85.4 6.1 189 32-318 361-557 (582)
397 cd03276 ABC_SMC6_euk Eukaryoti 97.7 0.00015 3.2E-09 71.8 9.6 54 225-287 104-160 (198)
398 TIGR03238 dnd_assoc_3 dnd syst 97.7 3.2E-05 6.9E-10 85.4 4.2 50 49-111 18-71 (504)
399 COG1245 Predicted ATPase, RNas 97.6 0.0002 4.3E-09 78.1 8.4 95 225-329 450-550 (591)
400 PRK00635 excinuclease ABC subu 97.5 0.00041 9E-09 87.2 11.0 81 209-300 787-871 (1809)
401 KOG4181 Uncharacterized conser 97.5 0.00032 6.9E-09 73.9 8.1 50 28-83 162-211 (491)
402 PF01926 MMR_HSR1: 50S ribosom 97.4 0.00029 6.2E-09 62.8 6.1 58 63-130 2-59 (116)
403 COG2401 ABC-type ATPase fused 97.4 0.00019 4.2E-09 77.4 5.3 49 52-104 398-450 (593)
404 cd01130 VirB11-like_ATPase Typ 97.4 0.00033 7.2E-09 68.4 6.3 45 50-106 15-60 (186)
405 TIGR00630 uvra excinuclease AB 97.4 0.0003 6.5E-09 84.1 7.1 79 225-313 823-903 (924)
406 cd01852 AIG1 AIG1 (avrRpt2-ind 97.4 0.00027 5.8E-09 69.3 5.6 61 62-131 2-62 (196)
407 PRK00349 uvrA excinuclease ABC 97.3 0.0011 2.4E-08 79.6 11.4 104 214-328 812-926 (943)
408 PF04548 AIG1: AIG1 family; I 97.3 0.00068 1.5E-08 67.7 8.0 61 62-131 2-62 (212)
409 COG3845 ABC-type uncharacteriz 97.3 0.0017 3.7E-08 71.6 11.0 213 31-318 255-481 (501)
410 PF03193 DUF258: Protein of un 97.2 0.00011 2.4E-09 70.5 1.3 35 48-83 24-58 (161)
411 PTZ00132 GTP-binding nuclear p 97.2 0.0029 6.3E-08 62.7 10.9 57 62-128 11-68 (215)
412 cd03280 ABC_MutS2 MutS2 homolo 97.2 0.00099 2.1E-08 65.7 7.3 21 61-81 29-49 (200)
413 cd03283 ABC_MutS-like MutS-lik 97.1 0.00027 5.8E-09 70.1 3.0 32 52-83 16-48 (199)
414 TIGR03263 guanyl_kin guanylate 97.1 0.00048 1E-08 66.2 4.5 24 61-84 2-25 (180)
415 PRK00300 gmk guanylate kinase; 97.1 0.00042 9.2E-09 68.1 4.1 25 60-84 5-29 (205)
416 KOG0065 Pleiotropic drug resis 97.0 0.003 6.5E-08 76.7 10.7 87 48-146 126-216 (1391)
417 COG4170 SapD ABC-type antimicr 97.0 0.0015 3.2E-08 65.1 6.2 51 33-83 3-56 (330)
418 TIGR02858 spore_III_AA stage I 97.0 0.00044 9.6E-09 71.8 2.7 39 60-110 111-150 (270)
419 cd04104 p47_IIGP_like p47 (47- 96.9 0.0012 2.5E-08 65.0 4.8 21 63-83 4-24 (197)
420 cd01854 YjeQ_engC YjeQ/EngC. 96.9 0.0015 3.3E-08 68.4 5.9 23 61-83 162-184 (287)
421 cd01858 NGP_1 NGP-1. Autoanti 96.8 0.0015 3.3E-08 61.7 5.0 54 61-128 103-157 (157)
422 COG1245 Predicted ATPase, RNas 96.8 0.0054 1.2E-07 67.2 9.7 78 225-313 208-286 (591)
423 cd00071 GMPK Guanosine monopho 96.8 0.0012 2.7E-08 61.4 3.9 22 62-83 1-22 (137)
424 TIGR00436 era GTP-binding prot 96.7 0.0022 4.8E-08 66.3 5.9 56 62-130 2-60 (270)
425 TIGR01069 mutS2 MutS2 family p 96.7 0.058 1.3E-06 64.0 18.2 23 61-83 323-345 (771)
426 PRK00089 era GTPase Era; Revie 96.7 0.0026 5.6E-08 66.3 6.1 24 60-83 5-28 (292)
427 PF13555 AAA_29: P-loop contai 96.7 0.0015 3.3E-08 52.8 3.2 22 62-83 25-46 (62)
428 PRK12288 GTPase RsgA; Reviewed 96.7 0.0015 3.1E-08 70.4 4.0 63 61-131 206-270 (347)
429 cd01876 YihA_EngB The YihA (En 96.7 0.0017 3.7E-08 59.9 3.9 20 63-82 2-21 (170)
430 PRK12289 GTPase RsgA; Reviewed 96.7 0.0018 4E-08 69.8 4.6 23 61-83 173-195 (352)
431 COG1159 Era GTPase [General fu 96.6 0.0028 6.1E-08 66.0 5.7 57 59-129 5-65 (298)
432 cd01853 Toc34_like Toc34-like 96.6 0.0035 7.6E-08 64.4 5.9 60 61-130 32-91 (249)
433 cd01878 HflX HflX subfamily. 96.6 0.0036 7.9E-08 61.2 5.7 25 59-83 40-64 (204)
434 TIGR00235 udk uridine kinase. 96.5 0.0018 3.9E-08 64.2 3.4 25 60-84 6-30 (207)
435 PF00350 Dynamin_N: Dynamin fa 96.5 0.003 6.6E-08 59.6 4.8 37 63-104 1-38 (168)
436 cd04163 Era Era subfamily. Er 96.5 0.0048 1E-07 56.6 5.8 23 61-83 4-26 (168)
437 PRK14737 gmk guanylate kinase; 96.5 0.0033 7.2E-08 61.7 4.9 40 61-100 5-44 (186)
438 PRK00098 GTPase RsgA; Reviewed 96.5 0.0035 7.5E-08 66.0 5.3 23 61-83 165-187 (298)
439 KOG0066 eIF2-interacting prote 96.5 0.06 1.3E-06 58.9 14.5 41 43-83 270-313 (807)
440 PRK10078 ribose 1,5-bisphospho 96.5 0.0022 4.7E-08 62.5 3.3 23 61-83 3-25 (186)
441 TIGR00157 ribosome small subun 96.5 0.0027 5.8E-08 65.0 4.1 23 61-83 121-143 (245)
442 TIGR00554 panK_bact pantothena 96.4 0.0024 5.1E-08 67.1 3.7 24 61-84 63-86 (290)
443 cd01898 Obg Obg subfamily. Th 96.4 0.0055 1.2E-07 57.4 5.9 21 63-83 3-23 (170)
444 COG0194 Gmk Guanylate kinase [ 96.4 0.0026 5.6E-08 62.3 3.5 40 61-101 5-44 (191)
445 cd04155 Arl3 Arl3 subfamily. 96.4 0.0042 9E-08 58.7 4.9 22 62-83 16-37 (173)
446 PRK14738 gmk guanylate kinase; 96.4 0.0038 8.3E-08 62.0 4.9 37 61-97 14-50 (206)
447 cd01850 CDC_Septin CDC/Septin. 96.4 0.005 1.1E-07 64.2 5.7 64 62-130 6-75 (276)
448 PRK10751 molybdopterin-guanine 96.4 0.0021 4.6E-08 62.5 2.6 31 61-91 7-37 (173)
449 TIGR02322 phosphon_PhnN phosph 96.3 0.0035 7.6E-08 60.3 4.0 24 61-84 2-25 (179)
450 PF13207 AAA_17: AAA domain; P 96.3 0.0028 6.1E-08 56.6 3.0 22 62-83 1-22 (121)
451 cd02023 UMPK Uridine monophosp 96.3 0.0023 5.1E-08 62.7 2.7 22 62-83 1-22 (198)
452 cd02025 PanK Pantothenate kina 96.3 0.0022 4.8E-08 64.6 2.5 23 62-84 1-23 (220)
453 PRK09270 nucleoside triphospha 96.3 0.0029 6.3E-08 63.8 3.2 26 59-84 32-57 (229)
454 PRK01889 GTPase RsgA; Reviewed 96.3 0.004 8.6E-08 67.3 4.5 34 61-106 196-230 (356)
455 PRK06002 fliI flagellum-specif 96.3 0.0059 1.3E-07 67.6 5.8 44 50-106 153-200 (450)
456 cd04101 RabL4 RabL4 (Rab-like4 96.2 0.0087 1.9E-07 55.8 5.8 60 63-128 3-62 (164)
457 cd01131 PilT Pilus retraction 96.2 0.0051 1.1E-07 60.8 4.3 38 62-110 3-41 (198)
458 PRK09825 idnK D-gluconate kina 96.2 0.0035 7.5E-08 61.0 3.0 23 61-83 4-26 (176)
459 KOG2355 Predicted ABC-type tra 96.2 0.0062 1.4E-07 60.7 4.7 33 51-83 28-63 (291)
460 cd03277 ABC_SMC5_euk Eukaryoti 96.1 0.018 3.9E-07 57.7 7.8 52 227-287 123-177 (213)
461 COG1162 Predicted GTPases [Gen 96.1 0.0067 1.4E-07 63.7 4.8 23 61-83 165-187 (301)
462 cd01849 YlqF_related_GTPase Yl 96.1 0.011 2.3E-07 55.8 5.8 54 61-128 101-155 (155)
463 PF00735 Septin: Septin; Inte 96.1 0.0064 1.4E-07 63.6 4.6 65 63-130 7-75 (281)
464 TIGR02788 VirB11 P-type DNA tr 96.1 0.018 3.9E-07 60.9 8.0 33 61-105 145-178 (308)
465 cd01861 Rab6 Rab6 subfamily. 96.1 0.0096 2.1E-07 55.3 5.3 57 63-128 3-59 (161)
466 cd04159 Arl10_like Arl10-like 96.1 0.0043 9.4E-08 56.6 2.9 53 63-128 2-54 (159)
467 cd03243 ABC_MutS_homologs The 96.0 0.0044 9.5E-08 61.2 3.1 23 61-83 30-52 (202)
468 cd00154 Rab Rab family. Rab G 96.0 0.01 2.2E-07 54.0 5.2 57 63-128 3-59 (159)
469 PRK05480 uridine/cytidine kina 96.0 0.0051 1.1E-07 60.8 3.4 24 60-83 6-29 (209)
470 cd04119 RJL RJL (RabJ-Like) su 96.0 0.0093 2E-07 55.3 5.0 58 63-129 3-60 (168)
471 COG5019 CDC3 Septin family pro 95.9 0.013 2.7E-07 62.9 6.1 69 62-130 25-94 (373)
472 PRK06995 flhF flagellar biosyn 95.9 0.0087 1.9E-07 67.0 5.1 23 61-83 257-279 (484)
473 PRK00454 engB GTP-binding prot 95.9 0.013 2.9E-07 56.5 5.8 23 61-83 25-47 (196)
474 cd02026 PRK Phosphoribulokinas 95.9 0.0068 1.5E-07 63.1 4.0 23 62-84 1-23 (273)
475 TIGR00176 mobB molybdopterin-g 95.9 0.0038 8.3E-08 59.5 2.0 31 62-92 1-31 (155)
476 TIGR00231 small_GTP small GTP- 95.9 0.013 2.9E-07 52.7 5.4 59 62-129 3-61 (161)
477 cd03284 ABC_MutS1 MutS1 homolo 95.9 0.0086 1.9E-07 60.1 4.4 32 52-83 20-53 (216)
478 PLN02318 phosphoribulokinase/u 95.9 0.0069 1.5E-07 68.9 4.1 35 49-83 54-88 (656)
479 cd00879 Sar1 Sar1 subfamily. 95.9 0.014 3E-07 56.2 5.7 31 53-83 10-42 (190)
480 cd01866 Rab2 Rab2 subfamily. 95.9 0.013 2.8E-07 55.4 5.4 58 62-128 6-63 (168)
481 PF02421 FeoB_N: Ferrous iron 95.9 0.011 2.3E-07 56.7 4.7 60 62-135 2-64 (156)
482 cd04171 SelB SelB subfamily. 95.9 0.012 2.5E-07 54.6 4.9 22 62-83 2-23 (164)
483 PF00485 PRK: Phosphoribulokin 95.8 0.0058 1.2E-07 59.9 2.9 23 62-84 1-23 (194)
484 cd01868 Rab11_like Rab11-like. 95.8 0.015 3.2E-07 54.5 5.5 58 62-128 5-62 (165)
485 cd01897 NOG NOG1 is a nucleola 95.8 0.019 4.1E-07 53.8 6.2 57 62-129 2-58 (168)
486 TIGR00750 lao LAO/AO transport 95.8 0.0042 9E-08 65.4 1.7 43 49-91 20-65 (300)
487 cd04114 Rab30 Rab30 subfamily. 95.8 0.013 2.9E-07 54.8 5.0 23 60-82 7-29 (169)
488 cd04106 Rab23_lke Rab23-like s 95.7 0.017 3.7E-07 53.6 5.5 60 62-128 2-61 (162)
489 cd01865 Rab3 Rab3 subfamily. 95.7 0.016 3.5E-07 54.5 5.4 59 62-129 3-61 (165)
490 cd04160 Arfrp1 Arfrp1 subfamil 95.7 0.015 3.3E-07 54.4 5.1 21 63-83 2-22 (167)
491 TIGR03598 GTPase_YsxC ribosome 95.7 0.017 3.7E-07 55.5 5.5 58 61-130 19-76 (179)
492 cd01896 DRG The developmentall 95.7 0.014 3E-07 59.3 5.1 22 62-83 2-23 (233)
493 cd04164 trmE TrmE (MnmE, ThdF, 95.7 0.012 2.6E-07 53.9 4.2 22 62-83 3-24 (157)
494 cd01863 Rab18 Rab18 subfamily. 95.7 0.017 3.7E-07 53.7 5.2 58 62-128 2-59 (161)
495 PRK15494 era GTPase Era; Provi 95.7 0.02 4.3E-07 61.4 6.4 22 62-83 54-75 (339)
496 cd04113 Rab4 Rab4 subfamily. 95.7 0.017 3.7E-07 53.8 5.2 57 63-128 3-59 (161)
497 cd01864 Rab19 Rab19 subfamily. 95.7 0.018 3.9E-07 54.0 5.4 58 62-128 5-62 (165)
498 PLN02796 D-glycerate 3-kinase 95.6 0.0087 1.9E-07 64.2 3.4 24 61-84 101-124 (347)
499 cd04122 Rab14 Rab14 subfamily. 95.6 0.019 4.1E-07 54.0 5.4 57 63-128 5-61 (166)
500 smart00175 RAB Rab subfamily o 95.6 0.019 4.2E-07 53.2 5.3 57 63-128 3-59 (164)
No 1
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=100.00 E-value=6.6e-44 Score=365.36 Aligned_cols=242 Identities=39% Similarity=0.653 Sum_probs=202.8
Q ss_pred ceEEeccccccccccccccEEEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcceEEcCcccCccccCcceEE
Q 007480 41 TKLRLSREGLETIRRITNPIAAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSV 120 (602)
Q Consensus 41 ~~l~~~~eal~iL~~Is~~V~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkGIwi~~~~~~~~~~~~~~~v 120 (602)
++|.++++|++.|+.++.||.||+|+|++|+|||||||.|+|. .+||+||++.++||+|||||++|.+ .++++++
T Consensus 2 ~~~~~~~~al~~l~~~~~~v~vvsi~G~~rtGKSfLln~l~~~--~~gF~~~~~~~~~T~Giw~w~~~~~---~~~~~~v 76 (260)
T PF02263_consen 2 NKLELNEEALEILQQIDQPVAVVSIVGPYRTGKSFLLNQLLGP--QSGFSWGPTVEPCTKGIWMWSEPLP---DGEKVAV 76 (260)
T ss_dssp TEEEE-HHHHHHHCTTTSBEEEEEEEEETTSSHHHHHHHHCCB--SSSSESSSCSSST-SCEEEECCE-T---TSTCEEE
T ss_pred CeEEECHHHHHHHhcCCCCEEEEEeecCCccchHHHHHHHhcc--cccccccCCCCCCCcceeeeecccc---cccceeE
Confidence 5799999999999999999999999999999999999999985 6899999999999999999999943 3678999
Q ss_pred EeeccccccccCCCCc-hhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccC-----CcccccCcccc
Q 007480 121 FYLDTEGFESIGKSNV-YDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVK-----GQDVAFEPAKL 194 (602)
Q Consensus 121 vl~DteG~~~~~~~tv-~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~-----~e~~~f~P~~f 194 (602)
+++||||+++.+..+. +|..+|++++||||++|||+++.+++++++.|..++++++.+..+.. .+...++|. |
T Consensus 77 ~llDteG~~~~~~~~~~~d~~if~Ls~LLSS~~IyN~~~~i~~~~l~~L~~~~~l~~~i~~~~~~~~~~~~~~~~fp~-l 155 (260)
T PF02263_consen 77 VLLDTEGLGDVEQSDEKYDAKIFALSMLLSSVLIYNSMGNIDEDDLDQLELFTELAKHIRVKYGDSADSEDLGKPFPS-L 155 (260)
T ss_dssp EEEEEECBTTTTCCCCHHCHHHHHHHHHH-SEEEEEECSSSSHHHHHCCHHHHHHHHHHHHTHHHHHHHHCTTTTCEE-E
T ss_pred EEecchhccccccCcccccHHHHHHHHHHhCceeeCCCCccchhHHHHHHHHHHHHHHHHHhcccccchhhhcccchH-H
Confidence 9999999988655554 68999999999999999999999999999999999999998865421 223456774 9
Q ss_pred hhhhhhccCC-----c--ccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcc---cCCCC
Q 007480 195 VWLIQRDFLQ-----G--KSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTK---LCDMK 264 (602)
Q Consensus 195 lw~vvRDf~~-----g--~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~---L~d~p 264 (602)
.|++ |||+. | .++++||+++|+...+. ++.+.+.|.+|++|+.+|++++||+||+|+.+++. +.+++
T Consensus 156 ~wlv-RDf~~~~~~~~~~~t~~eyLe~~L~~~~~~--~~~~~~~N~iR~~I~~~F~~~~cf~Lp~P~~~~~~l~~l~~l~ 232 (260)
T PF02263_consen 156 VWLV-RDFSLELEDDGGKITPQEYLEQALKPESGQ--DEEIQERNKIRECIRSCFPSRDCFTLPHPGSDVDKLQNLDGLS 232 (260)
T ss_dssp EEEE-ECE-SCTCCTTECHHHHHHHHHHCCSSTSS--SCCCCCHHHHHHHHHHHECCEEEEEEE-SSCCCCC-TCGCCCB
T ss_pred HHHH-hhccchhhhccCCCCHHHHHHHHHhcccch--hHHHHHhhHHHHHHHHHCCCCeEEEecCCCchhhhccCcccCC
Confidence 9987 99982 2 37999999999865543 46778899999999999999999999999998765 44557
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhcCCCc
Q 007480 265 DEELDPIYVKRREQLKKLVASVTRPKI 291 (602)
Q Consensus 265 ~~~Ld~~F~e~~~~L~~~I~~~~~pK~ 291 (602)
.++|+|+|++++++|+++|++..++|+
T Consensus 233 ~~~L~~eF~~~l~~l~~~i~~~~~~k~ 259 (260)
T PF02263_consen 233 LDDLDPEFVEQLDELVKYIFSSAKVKT 259 (260)
T ss_dssp GGGS-HHHHHHHHHHHHHHHCCT---B
T ss_pred hhhCCHHHHHHHHHHHHHHhccCCccc
Confidence 899999999999999999998777775
No 2
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=99.97 E-value=3.8e-30 Score=258.27 Aligned_cols=217 Identities=34% Similarity=0.493 Sum_probs=173.8
Q ss_pred cccccEEEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcceEEcCcccCccccCcceEEEeeccccccccCCC
Q 007480 55 RITNPIAAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKS 134 (602)
Q Consensus 55 ~Is~~V~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~~~~~~~ 134 (602)
.++.++.+|+|+|++|+|||||||.|+|. .++|+++++..+||+|||+|..|+.. +.+..++++||||+++.+..
T Consensus 2 ~~~~~v~vvsv~G~~~sGKS~llN~l~~~--~~~f~~~~~~~~~T~gi~~~~~~~~~---~~~~~v~~lDteG~~~~~~~ 76 (224)
T cd01851 2 KAGFPVAVVSVFGPQSSGKSFLLNHLFGT--LSGFDVMDTSQQTTKGIWMWSVPFKL---GKEHAVLLLDTEGTDGRERG 76 (224)
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHhCC--CCCeEecCCCCCCccceEEEeccccC---CCcceEEEEecCCcCccccC
Confidence 46789999999999999999999999995 47999999999999999999998764 35678999999999987776
Q ss_pred C-chhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccC-CcccccCcccchhhhhhccCCcccHHHHH
Q 007480 135 N-VYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVK-GQDVAFEPAKLVWLIQRDFLQGKSVQEMV 212 (602)
Q Consensus 135 t-v~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~-~e~~~f~P~~flw~vvRDf~~g~t~~eyL 212 (602)
. .+|..+|+++.+|||++|||+++.+++.+++.|..+++.+........ .....++| .++|++ |||+.... .+..
T Consensus 77 ~~~~~~~~~~l~~llss~~i~n~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p-~ll~vv-RD~~~~~~-~~~~ 153 (224)
T cd01851 77 EFEDDARLFALATLLSSVLIYNSWETILGDDLAALMGLLKTTLEVLGLAGLTEFEKPKP-LLLFVV-RDFSLDTP-LENL 153 (224)
T ss_pred chhhhhHHHHHHHHHhCEEEEeccCcccHHHHHHHHHHHHHHHHhhhhhhhhhcccCCC-ceEEEE-ecCcCCcc-cccc
Confidence 6 788999999999999999999999999999999999887522111111 22334566 488877 99983211 1111
Q ss_pred HHHHHhCCCCCCCCCchhhhhHHHHHHhhc--CCCcEEEccCccchhcccC-CCCCCCCCHHHHHHHHHHHHHHhh
Q 007480 213 HDALQRVPNDKGDKNIDMVNQIRNSLAIMG--DNSTAFSLPQPHLLRTKLC-DMKDEELDPIYVKRREQLKKLVAS 285 (602)
Q Consensus 213 e~aL~~~~~~~~~~~i~~ln~~r~~i~~~f--~~~~cf~L~~P~~~~~~L~-d~p~~~Ld~~F~e~~~~L~~~I~~ 285 (602)
... .......+.++.+|++|+.+| ++++||++++|+.+++.+. +.+..+++++|.++++.|++.+.+
T Consensus 154 ~~~------~~~~~~~~~~~~ir~~l~~~f~~~~~~cf~l~~p~~~~~~~~~~~~~~~l~~eF~~~l~~L~~~~~~ 223 (224)
T cd01851 154 DIT------EGRETLIEDLNKIWSSIRKPFENPPIDCFFLPRPGLLHHLLQNEGRLKLLPPEFLEALKELRDRFFS 223 (224)
T ss_pred ccc------cccchhHHHHHHHHHHHHhhccCCcchheeccccccchhhcccccchhhCCHHHHHHHHHHHHHhcC
Confidence 100 112356778999999999999 9999999999999876554 667789999999999999988753
No 3
>KOG2037 consensus Guanylate-binding protein [General function prediction only]
Probab=99.96 E-value=2.3e-29 Score=276.56 Aligned_cols=353 Identities=25% Similarity=0.306 Sum_probs=296.5
Q ss_pred cEEeeCCCcceEEeccccccccccccccEEEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcceEEcCcccCc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPIAAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEM 111 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkGIwi~~~~~~~ 111 (602)
|++.+++.++++..++ |+.+|+-+..|+.|++|+|.+++||||+||.++|. +.||++++++.++|+|||+|+.|+..
T Consensus 5 p~~~~~~~~~~l~~~p-a~~~l~~~~~p~~Vv~i~g~~~~gksfiln~la~~--~~gf~~~s~~~~~~~~~w~w~~p~~k 81 (552)
T KOG2037|consen 5 PMLLYENENGQLKVNP-ALEILQAIKQPVAVVAIVGLYRTGKSFILNQLAGK--RIGFSVASTDKPVTKGIWMWCVPHGK 81 (552)
T ss_pred chhhhhccccccccCc-chhHHhhccCCceEEEEEEEEcCCCceehhhhHhh--hcCCCcccccccceeeEEEEEeecCC
Confidence 4556667788999999 99999999999999999999999999999999996 79999999999999999999999874
Q ss_pred cccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccC--------
Q 007480 112 EIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVK-------- 183 (602)
Q Consensus 112 ~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~-------- 183 (602)
+..+.+|++|++|... ....+.++|+++.|+||+++||+.+.++...+..+.+++++++.++..+.
T Consensus 82 ---~~~~~l~Lld~eg~~~---~~~~~~w~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~k~~~~l~~~~~a~ 155 (552)
T KOG2037|consen 82 ---SFLLNLVLLDTEGLKG---DNENDDWIFALAPLLSSTWVYGSEGTINGIAMWQLPFVTELTEGIKVASSLMDTQGAF 155 (552)
T ss_pred ---ccchhhhhhccccccC---CccchhhhhccchhhcceeeccCCcccchheecccceeeecCCcceeccccccccccc
Confidence 5788999999999732 23457899999999999999999999999999999999999988776554
Q ss_pred ---CcccccCcccchhhhhhccC-----Cc--ccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCc
Q 007480 184 ---GQDVAFEPAKLVWLIQRDFL-----QG--KSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQP 253 (602)
Q Consensus 184 ---~e~~~f~P~~flw~vvRDf~-----~g--~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P 253 (602)
+....++|. |.|+. |||+ ++ .++++|++..|... .+|+.+.
T Consensus 156 ~~~~~~~~~~p~-fa~tt-~~~slqi~~~~q~i~ed~l~~l~l~~~-------------~g~~~l~-------------- 206 (552)
T KOG2037|consen 156 DDQSTFRSCFPD-FALTT-MDSSLQIYNDSQNIQEDDLQHLSLFTE-------------YGRLALA-------------- 206 (552)
T ss_pred cccccHHHhcch-hhcee-eeeehhhhcccCcCCHHHHHHHHHHHH-------------HHHHHHH--------------
Confidence 122457785 99998 9998 22 46777777776432 2232222
Q ss_pred cchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccc-eEeeccHHHHHHHHHHHHHHcCC-CCCCCcc----hHHH
Q 007480 254 HLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQ-GKFLNGNEFVAFMEQILEALNKG-EIPSTGS----LVEV 327 (602)
Q Consensus 254 ~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~-g~~ltG~~l~~lv~~yv~aINsG-~vP~~~s----l~e~ 327 (602)
.+...|.++|++.++.+....|.++......|++. +..++|+.+.++...|..+++.+ ++||... +.++
T Consensus 207 -----~~~~kp~q~L~~~~~~~s~~~c~~~~~~~~~~~l~~~l~v~~~~~~el~~~r~~~~~~~~d~~c~~~~~~~l~~~ 281 (552)
T KOG2037|consen 207 -----HLFKKPFQDLKFLVRDQSFPFCSYIGEHGGTKNLDNRLKVNGPQLEELVQLRVHARSCFEDLPCFLNPHPGLAVA 281 (552)
T ss_pred -----HhccCcHHHHHHHHHHhhhhhhHHHHHhccccccccceeecccchHHHHHHHHHHHhhccCcchhhcCchhhhcc
Confidence 33456888999999999999999999988889888 57999999999999999999999 9999864 4567
Q ss_pred HhHHHHHHHHHHHHHHHhhc--cCCC-ChhHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007480 328 FNKGILERCLKLYNERMAKV--RLPL-PEQSLQDAHERSKKEAMDVFDVQHFGRQHAKKSVMQLDEEIQEAYKNVIMANE 404 (602)
Q Consensus 328 ~n~~av~~a~~~Y~~~M~~~--~lP~-~~eeL~~~H~~~~~eAl~~F~k~sfgd~~~~~~~~~L~~~i~~~~~~~~~~Ne 404 (602)
.|..+.+.+.++|...|.+. ..|. ..+++...|..+..++...+.++.|++. .+-+++++.+++..... ++++|.
T Consensus 282 ~n~~~~~~~~~~~~~~~~ql~~~~p~~~~q~~l~~~~~~~~~~t~~~~~e~fk~y-~~i~q~~~g~~lp~pks-~l~~~a 359 (552)
T KOG2037|consen 282 ENPAFDGKLEDHYNQFMGQLKVELPNLLLQELLDEKEISGREVTCREMKEYFKAY-DKIFQKKLGETLPGPKS-MLKANA 359 (552)
T ss_pred cCchhhhhHHHHHHHHHHHHhhhhhHHhhhhhccccccCccchhHHHHHHHHHHH-HHHhhHhhhhhCcCccc-HHHHHH
Confidence 88999999999999999975 4564 3689999999999999999999999875 35677889999998888 999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhcccchHHHHHHh
Q 007480 405 YQSSKICESLYTRCEDKMDQLQVLRLPSMAKFNAG 439 (602)
Q Consensus 405 ~~S~~~C~~~~~~~e~kl~~~~~~~~~~~~~~~~~ 439 (602)
+++...|.+. +++.+.+.++++..|
T Consensus 360 ea~~l~~va~----------ak~~~~~~~Eev~~G 384 (552)
T KOG2037|consen 360 EASSLAAVAA----------AKDIYGPLMEEVKGG 384 (552)
T ss_pred HHhhHHHHHH----------HHHHHhhhhhhhhcC
Confidence 9999999999 555666666666666
No 4
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=99.90 E-value=8.2e-23 Score=213.47 Aligned_cols=157 Identities=25% Similarity=0.424 Sum_probs=129.6
Q ss_pred ceEeeccHHHHHHHHHHHHHHcCCCCCCCcchH----HHHhHHHHHHHHHHHHHHHhhc-cCCCC-hhHHHHHHHHHHHH
Q 007480 293 QGKFLNGNEFVAFMEQILEALNKGEIPSTGSLV----EVFNKGILERCLKLYNERMAKV-RLPLP-EQSLQDAHERSKKE 366 (602)
Q Consensus 293 ~g~~ltG~~l~~lv~~yv~aINsG~vP~~~sl~----e~~n~~av~~a~~~Y~~~M~~~-~lP~~-~eeL~~~H~~~~~e 366 (602)
+|.+|||++|+.++++||+|||+|.|||++|.| +.+|.+|+++|+++|.+.|++. .+|++ .++|.+.|+.|.++
T Consensus 1 gG~~vtG~~L~~L~~~Yv~aIn~G~vP~iesa~~~~~e~e~~~A~~~A~~~Y~~~m~~~~~~P~~~~~eL~~~H~~~~~~ 80 (297)
T PF02841_consen 1 GGITVTGPMLAELVKSYVDAINSGSVPCIESAWQAVAEAENRAAVEKAVEHYEEQMEQRVKLPTETLEELLELHEQCEKE 80 (297)
T ss_dssp TSEB-BHHHHHHHHHHHHHHHHTTS--BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-SSHHHHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHH
Confidence 488999999999999999999999999999866 5669999999999999999976 99998 89999999999999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHhhhcccchHHHHHHhHhh
Q 007480 367 AMDVFDVQHFGRQHAKKSVMQLDEEIQEAYKNVIMANEYQSSKICESLYTR----CEDKMDQLQVLRLPSMAKFNAGFLQ 442 (602)
Q Consensus 367 Al~~F~k~sfgd~~~~~~~~~L~~~i~~~~~~~~~~Ne~~S~~~C~~~~~~----~e~kl~~~~~~~~~~~~~~~~~~~~ 442 (602)
|+++|++++|||. .++|+++|.+.|++++++|+++|+.+|...|++++.. ++++++.-..-.......|.+.+..
T Consensus 81 A~~~F~~~s~~d~-~~~~~~~L~~~i~~~~~~~~~~N~~~s~~~C~~~l~~l~~~le~~l~~~~~~~~gg~~~~~~~~~~ 159 (297)
T PF02841_consen 81 ALEVFMKRSFGDE-DQKYQKKLMEQIEKKFEEFCKQNEEASEKKCQALLQELFQPLEEKLKQGCYSKPGGYQLFLKELDE 159 (297)
T ss_dssp HHHHHHHH----G-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Confidence 9999999999994 5789999999999999999999999999999999877 4555554333323347778888888
Q ss_pred hhhhhchh
Q 007480 443 CNQSFAHE 450 (602)
Q Consensus 443 ~~~~f~~~ 450 (602)
+.++|.+.
T Consensus 160 ~~~~Y~~~ 167 (297)
T PF02841_consen 160 LEKEYEQE 167 (297)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhhc
Confidence 88899888
No 5
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=99.87 E-value=4.5e-20 Score=213.30 Aligned_cols=351 Identities=19% Similarity=0.288 Sum_probs=238.9
Q ss_pred ECCCCCCHHHHHHHHHcCCCCCCCcccc--cccCCCcceEEcCcccCccccCcceEEEeeccccccccCCCCc----hhH
Q 007480 66 IGPYRSGKSFLLNQLLSLSCDEGFGVGH--MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSNV----YDD 139 (602)
Q Consensus 66 vG~~gsGKStLLn~L~g~~~~~gF~vg~--t~~~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~~~~~~~tv----~d~ 139 (602)
+|+.+||||||||.|.|. .|.+.. ++.++|+||||...+... ...-.++++|.||.++.+++.. +..
T Consensus 1 ~g~qssgkstlln~lf~t----~f~~m~~~~r~qtt~gi~~~~~~~~~---~~~~~~~v~d~eg~d~~er~~~~~fe~~~ 73 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGT----QFDVMDESGRQQTTKGIWMAKAKEVE---SSESNILVLDVEGTDGRERGEDQDFERKS 73 (742)
T ss_pred CCCCCCcHHHHHHHHHCC----CccccccccccccchhhHHHhccccc---cCCCceEEEeCCCCCchhhccccchHHHH
Confidence 599999999999999995 699865 577899999997543321 1234677899999987665432 235
Q ss_pred HHHHHHhhhhhhhhcccc----hhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHH
Q 007480 140 RIFALATVMSSVLIYNLP----ETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDA 215 (602)
Q Consensus 140 ~ifaLa~LLSS~~IyN~~----~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~a 215 (602)
.+|++++ |+++|.|++ |..+.+....|..++++.-+++.+.+. -.+...+.||+|||+ |.||.+.|+..
T Consensus 74 alf~la~--s~~~iiN~w~~~iG~~~~an~~lLktvfevnl~lf~~~~~----~~~k~~llfviRD~~-~~tp~e~l~~~ 146 (742)
T PF05879_consen 74 ALFALAV--SDVLIINMWEHDIGRYQGANMGLLKTVFEVNLQLFGKSKS----NDRKTLLLFVIRDHT-GVTPLENLEET 146 (742)
T ss_pred HHHHHHh--hhheeeehhhhhhhhhcccchHHHHHHHHHHHHHHhhccc----CCCCceEEEEEeeCC-CCCcHHHHHHH
Confidence 6788877 999999987 556677788899999988777765331 122236677779998 45777777776
Q ss_pred HHhCCCCCCCCCchhhhhHHHH-----------HHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHh
Q 007480 216 LQRVPNDKGDKNIDMVNQIRNS-----------LAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVA 284 (602)
Q Consensus 216 L~~~~~~~~~~~i~~ln~~r~~-----------i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~ 284 (602)
|. +.++.++.. +..|| +...+.|||..++ ..+|.+++.+|++.+.
T Consensus 147 l~-----------~dl~~iW~~i~kP~~~~~~~~~d~F-d~~f~~LpH~~~~------------~e~F~~~v~~Lr~rf~ 202 (742)
T PF05879_consen 147 LR-----------EDLEKIWDSISKPEGFENSSLSDFF-DLEFTALPHKILQ------------PEKFNEDVAKLRQRFV 202 (742)
T ss_pred HH-----------HHHHHHHHhccCcccccCCChhhee-eeeeeccCchhhh------------HHHHHHHHHHHHHHHh
Confidence 64 223333333 34455 4445566665542 1379999999998887
Q ss_pred hh-------cCCCccceEeeccHHHHHHHHHHHHHHcCC---CCCCCcch-HHHHhHHHHHHHHHHHHHHHhhcc-----
Q 007480 285 SV-------TRPKIVQGKFLNGNEFVAFMEQILEALNKG---EIPSTGSL-VEVFNKGILERCLKLYNERMAKVR----- 348 (602)
Q Consensus 285 ~~-------~~pK~l~g~~ltG~~l~~lv~~yv~aINsG---~vP~~~sl-~e~~n~~av~~a~~~Y~~~M~~~~----- 348 (602)
+. .+|....++|+.| +..|++..|+.|.++ ++|+++-+ ++.-|.++.+++++.+...+....
T Consensus 203 ~~~~~~~~~~~~~y~~~iP~dG--~~~y~~~iW~~I~~nkDLDLPtqq~mlA~fRCdEI~~e~l~~f~~~~~~~~~~~~~ 280 (742)
T PF05879_consen 203 DSKNIEDGLFKPEYHRRIPADG--FSMYAENIWEQIKNNKDLDLPTQQEMLAQFRCDEIANEVLEEFDEDIKELIEKWSE 280 (742)
T ss_pred ccCcCCCCCCchhhcCCCChHH--hHHHHHHHHHHHHhCccCCCCcHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 64 3344344556666 788999999999665 79998764 567799999999999988865422
Q ss_pred -----CCCChhHHHHHHHHHHHHHHHHHHHhc--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007480 349 -----LPLPEQSLQDAHERSKKEAMDVFDVQH--FGRQHAKKSVMQLDEEIQEAYKNVIMANEYQSSKICESLYTRCEDK 421 (602)
Q Consensus 349 -----lP~~~eeL~~~H~~~~~eAl~~F~k~s--fgd~~~~~~~~~L~~~i~~~~~~~~~~Ne~~S~~~C~~~~~~~e~k 421 (602)
-....++|...-....++|++.|+..+ +......+.+++|++.|...++...... -...+..+++.+.+.
T Consensus 281 l~~~~~~~~~~~fg~~~~~l~~~~L~~YD~~AsrY~~~V~~~Kr~eL~~~i~~~l~~lf~~q---L~~L~~~~l~~Fk~~ 357 (742)
T PF05879_consen 281 LEEAVQGGVVEDFGKKLKSLRDKALEEYDEEASRYHKSVYQEKRQELESKIDSELQPLFQKQ---LKHLRKKLLESFKEA 357 (742)
T ss_pred hhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 234568999999999999999999875 4334455666788888888777766543 445556666666665
Q ss_pred hHHhhhcccchHHHHHHhHhhhhhhhchhcc----CCcchhH
Q 007480 422 MDQLQVLRLPSMAKFNAGFLQCNQSFAHECV----GPSKANY 459 (602)
Q Consensus 422 l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~----GP~~~~~ 459 (602)
+...-.....-.+........+...|++.|. .-..|.+
T Consensus 358 l~~~lk~~~~Fa~~v~~~~~~~~~~F~~~a~~~~i~~~~ws~ 399 (742)
T PF05879_consen 358 LSSALKSGEDFAEAVRECKQSALEEFEESAEDLVIEGADWSY 399 (742)
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcch
Confidence 5531111122233344455566677777662 2255655
No 6
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=1.5e-21 Score=191.27 Aligned_cols=215 Identities=20% Similarity=0.263 Sum_probs=157.6
Q ss_pred EEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcc
Q 007480 33 IVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNP 108 (602)
Q Consensus 33 lv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~ 108 (602)
+|.+.+.+..| ...++|++|++.| +|++|+|||||||||||++|.++ +++++| |++.|.+
T Consensus 2 mi~i~~l~K~f----g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~L------------E~~~~G~I~i~g~~ 65 (240)
T COG1126 2 MIEIKNLSKSF----GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL------------EEPDSGSITVDGED 65 (240)
T ss_pred eEEEEeeeEEe----CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCC------------cCCCCceEEECCEe
Confidence 45666554444 5778999999999 99999999999999999999999 799999 9999976
Q ss_pred cCc----cccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCC
Q 007480 109 VEM----EIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKG 184 (602)
Q Consensus 109 ~~~----~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~ 184 (602)
+.. ...++++++|||....| |+.|+.||+..+... +....+..
T Consensus 66 ~~~~~~~~~~R~~vGmVFQ~fnLF---PHlTvleNv~lap~~------v~~~~k~e------------------------ 112 (240)
T COG1126 66 VGDKKDILKLRRKVGMVFQQFNLF---PHLTVLENVTLAPVK------VKKLSKAE------------------------ 112 (240)
T ss_pred ccchhhHHHHHHhcCeeccccccc---ccchHHHHHHhhhHH------HcCCCHHH------------------------
Confidence 532 12467899999987665 588999999987643 12222222
Q ss_pred cccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCC
Q 007480 185 QDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDM 263 (602)
Q Consensus 185 e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~ 263 (602)
..+.-.+.|+.++. +..+.++.++|++++|+.+++ ++.+ .+|.+ .|+||
T Consensus 113 -----------------------A~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIA---RALa-M~P~v---mLFDE 162 (240)
T COG1126 113 -----------------------AREKALELLEKVGLADKADAYPAQLSGGQQQRVAIA---RALA-MDPKV---MLFDE 162 (240)
T ss_pred -----------------------HHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHH---HHHc-CCCCE---EeecC
Confidence 22333334444443 233567788999999999999 6776 56777 89999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHHhH
Q 007480 264 KDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVFNK 330 (602)
Q Consensus 264 p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~n~ 330 (602)
|++.|||+-+ .++.+.+.++++. .++-..+|+.+ |+.-+.+.|--++.|.+-..++..+.+.+
T Consensus 163 PTSALDPElv---~EVL~vm~~LA~e-GmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 163 PTSALDPELV---GEVLDVMKDLAEE-GMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred CcccCCHHHH---HHHHHHHHHHHHc-CCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 9999999994 5556666666543 35556788854 77777777777789987777776666643
No 7
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.83 E-value=3.8e-20 Score=195.70 Aligned_cols=218 Identities=18% Similarity=0.289 Sum_probs=168.9
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGN 107 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~ 107 (602)
+.+++++.+..| ....+++++|+.| ++++++|||||||||||++|+|+ ++||.| |++.|+
T Consensus 4 ~~l~i~~v~k~y----g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGf------------e~p~~G~I~l~G~ 67 (352)
T COG3842 4 PALEIRNVSKSF----GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF------------EQPSSGEILLDGE 67 (352)
T ss_pred ceEEEEeeeeec----CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCE
Confidence 345666544444 3667899999999 89999999999999999999998 699999 999999
Q ss_pred ccCc-cccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcc
Q 007480 108 PVEM-EIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQD 186 (602)
Q Consensus 108 ~~~~-~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~ 186 (602)
++.. ...++.+++||||...| |++||.||+.|+|.. ++.
T Consensus 68 ~i~~lpp~kR~ig~VFQ~YALF---PHltV~~NVafGLk~----------~~~--------------------------- 107 (352)
T COG3842 68 DITDVPPEKRPIGMVFQSYALF---PHMTVEENVAFGLKV----------RKK--------------------------- 107 (352)
T ss_pred ECCCCChhhcccceeecCcccC---CCCcHHHHhhhhhhh----------cCC---------------------------
Confidence 8865 34678899999998776 489999999999864 000
Q ss_pred cccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCC
Q 007480 187 VAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKD 265 (602)
Q Consensus 187 ~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~ 265 (602)
+ ...+..+.++++|+.+.. ...++.+.++|++++|+.+++ ++.+ +.|.. .|+|||.
T Consensus 108 ----~------------~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALA---RAL~-~~P~v---LLLDEPl 164 (352)
T COG3842 108 ----L------------KKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALA---RALV-PEPKV---LLLDEPL 164 (352)
T ss_pred ----C------------CHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHH---HHhh-cCcch---hhhcCcc
Confidence 0 112345667777777765 445788999999999999999 5555 88988 8999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHHHHHH-HHHHHHHHcCCCCCCCcchHHHHhHH
Q 007480 266 EELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNEFVAF-MEQILEALNKGEIPSTGSLVEVFNKG 331 (602)
Q Consensus 266 ~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~l~~l-v~~yv~aINsG~vP~~~sl~e~~n~~ 331 (602)
+.||..-+ .+++..+.++.+.-.++-..+|+.+...+ +.+.+-.+|+|.+-..++..+++..-
T Consensus 165 SaLD~kLR---~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 165 SALDAKLR---EQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred cchhHHHH---HHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999984 45555555554444566678999665554 77788888999999999988877543
No 8
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=99.82 E-value=1.8e-18 Score=186.13 Aligned_cols=244 Identities=25% Similarity=0.354 Sum_probs=171.4
Q ss_pred cccccccEEEEEEECCCCCCHHHHHHHHHcCCCCCCCccc---ccccCCCcceEEcCcccCccccCcceEEEeecccccc
Q 007480 53 IRRITNPIAAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVG---HMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 129 (602)
Q Consensus 53 L~~Is~~V~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg---~t~~~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~~ 129 (602)
|.+..++..||+|+||..||||||||.|.|. .|... -++.+.|+|||+.... +....++.+|.||.+
T Consensus 30 l~d~Gl~YhVVavmG~QSSGKSTLLN~LFgT----nF~~MDA~~gRqQTTKGIWlar~~------~i~p~i~vmDvEGTD 99 (772)
T KOG2203|consen 30 LRDCGLSYHVVAVMGSQSSGKSTLLNHLFGT----NFREMDAFKGRQQTTKGIWLARCA------GIEPCILVMDVEGTD 99 (772)
T ss_pred ccccCcceeEEEEecCcccchHHHHHHHhcc----ChHHHHhhhccccccchhhHHhhc------CCCCceEEEecccCC
Confidence 4666788899999999999999999999995 46653 3678899999986421 233467889999998
Q ss_pred ccCCCCc----hhHHHHHHHhhhhhhhhcccc----hhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhc
Q 007480 130 SIGKSNV----YDDRIFALATVMSSVLIYNLP----ETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRD 201 (602)
Q Consensus 130 ~~~~~tv----~d~~ifaLa~LLSS~~IyN~~----~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRD 201 (602)
+-+++.. +...+|++++ |.++|.|++ |..+.+....|..++++.-+++.+-+. ..++.||+||
T Consensus 100 GrERGEDqdFErksALFaiav--SevvivNMW~~qIG~~Q~aN~~LLKTVfeV~lrLF~~rk~-------k~~LlFVIRD 170 (772)
T KOG2203|consen 100 GRERGEDQDFERKSALFAIAV--SEVVIVNMWEHQIGLYQGANMALLKTVFEVNLRLFSPRKN-------KTLLLFVIRD 170 (772)
T ss_pred cccccccccHHHHhHHHHHhh--hheehhhHHHHHhhHhhccCcHHHHHHHHHHHHHhCCCCC-------ceEEEEEEec
Confidence 7655532 3368899988 999999988 445567778888998887776543211 1256667799
Q ss_pred cCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhh-----------cCCCcEEEccCccchhcccCCCCCCCCCH
Q 007480 202 FLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIM-----------GDNSTAFSLPQPHLLRTKLCDMKDEELDP 270 (602)
Q Consensus 202 f~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~-----------f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~ 270 (602)
++ |-||.+.|+..|. ++++.++..+.+. | +.....|+|-.. + ..
T Consensus 171 ~~-~~TplenLe~~l~-----------~dlqkIW~sl~KPe~~e~s~l~DfF-dv~~v~Ls~~~~-----k-------ed 225 (772)
T KOG2203|consen 171 KT-GVTPLENLEDVLR-----------EDLQKIWDSLSKPEGHENSPLNDFF-DVEFVGLSHKEL-----K-------ED 225 (772)
T ss_pred cc-CCCchHHhhHHHH-----------HHHHHHHHhcCCcccccCCchhhhh-ceeeeecchHHH-----H-------HH
Confidence 97 6688888888875 3455555544332 2 112222222111 1 24
Q ss_pred HHHHHHHHHHHHHhhh-cCCCccce-----EeeccHHHHHHHHHHHHHHcCC---CCCCCcchH-HHHhHHHHHHHHHHH
Q 007480 271 IYVKRREQLKKLVASV-TRPKIVQG-----KFLNGNEFVAFMEQILEALNKG---EIPSTGSLV-EVFNKGILERCLKLY 340 (602)
Q Consensus 271 ~F~e~~~~L~~~I~~~-~~pK~l~g-----~~ltG~~l~~lv~~yv~aINsG---~vP~~~sl~-e~~n~~av~~a~~~Y 340 (602)
.|.+++..|++.+.+. ..|..++| .|.+| ++-+.+..|+.|.++ ++|+.+-++ ..-|..+.++++..|
T Consensus 226 qF~e~V~~LrqrFv~s~~s~~~f~~d~~~~iPadG--fs~~a~qiWd~Ie~NKDLDLPtqqvlvAt~rceEIanE~~e~f 303 (772)
T KOG2203|consen 226 QFKEQVASLRQRFVHSGISPYGFAGDYHGVIPADG--FSFYAEQIWDVIEENKDLDLPTQQVLVATVRCEEIANEKLEEF 303 (772)
T ss_pred HHHHHHHHHHHHHHhcCCCCCccccccCCcccccc--hhhhHHHHHHHHHhCcCCCCchhhhHHhhhhHHHHHHHHHHHh
Confidence 7999999999887766 67766665 35555 666999999999554 789988654 566788777777766
Q ss_pred HH
Q 007480 341 NE 342 (602)
Q Consensus 341 ~~ 342 (602)
-.
T Consensus 304 it 305 (772)
T KOG2203|consen 304 IT 305 (772)
T ss_pred hh
Confidence 44
No 9
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.80 E-value=1.6e-19 Score=190.06 Aligned_cols=201 Identities=16% Similarity=0.254 Sum_probs=149.1
Q ss_pred ccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc-cccCcceEEEeeccc
Q 007480 52 TIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM-EIDGSRTSVFYLDTE 126 (602)
Q Consensus 52 iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~-~~~~~~~~vvl~Dte 126 (602)
+|+++++.| ++++++|||||||||||++|+|+ +.+|.| |.+.|.++.. .+.++++++|||+..
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGL------------e~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yA 85 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL------------EEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYA 85 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCEECCCCChhHCCEEEEeCCcc
Confidence 899999998 89999999999999999999999 699999 9999998875 345789999999886
Q ss_pred cccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCcc
Q 007480 127 GFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGK 206 (602)
Q Consensus 127 G~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~ 206 (602)
.+ |++||+||+.|+|.. ....+...+.+
T Consensus 86 Ly---PhmtV~~Niaf~Lk~-------~~~~k~ei~~r------------------------------------------ 113 (338)
T COG3839 86 LY---PHMTVYENIAFGLKL-------RGVPKAEIDKR------------------------------------------ 113 (338)
T ss_pred cc---CCCcHHHHhhhhhhh-------CCCchHHHHHH------------------------------------------
Confidence 65 589999999999976 22222222233
Q ss_pred cHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhh
Q 007480 207 SVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVAS 285 (602)
Q Consensus 207 t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~ 285 (602)
++++.+.... +.-++.+.++|++++|+.+++ ++.+ .+|.. .|.|||.+.||.... .+++..|.+
T Consensus 114 -----V~eva~~L~l~~lL~r~P~~LSGGQrQRVAla---RAlV-r~P~v---~L~DEPlSnLDa~lR---~~mr~ei~~ 178 (338)
T COG3839 114 -----VKEVAKLLGLEHLLNRKPLQLSGGQRQRVALA---RALV-RKPKV---FLLDEPLSNLDAKLR---VLMRSEIKK 178 (338)
T ss_pred -----HHHHHHHcCChhHHhcCcccCChhhHHHHHHH---HHHh-cCCCE---EEecCchhHhhHHHH---HHHHHHHHH
Confidence 3333333322 122566788999999999998 6665 77887 789999999999984 455555555
Q ss_pred hcCCCccceEeeccHHHHH-HHHHHHHHHcCCCCCCCcchHHHHhHH
Q 007480 286 VTRPKIVQGKFLNGNEFVA-FMEQILEALNKGEIPSTGSLVEVFNKG 331 (602)
Q Consensus 286 ~~~pK~l~g~~ltG~~l~~-lv~~yv~aINsG~vP~~~sl~e~~n~~ 331 (602)
+-+.-..+-..+|+.+... .+.+-+-.+|+|.+-..++..+.+++.
T Consensus 179 lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 179 LHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred HHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 4332234456788865543 355556666889999999888877543
No 10
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=3.5e-19 Score=182.60 Aligned_cols=217 Identities=18% Similarity=0.271 Sum_probs=163.0
Q ss_pred eeCCCcceEEe-ccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCccc
Q 007480 35 EPDPGHTKLRL-SREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPV 109 (602)
Q Consensus 35 ~~d~~~~~l~~-~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~ 109 (602)
..++.+..|.- ......+|+++++.| +++||+|.||+|||||++++.++ +.||+| |.+.|.++
T Consensus 3 ~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~L------------e~PtsG~v~v~G~di 70 (339)
T COG1135 3 ELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLL------------ERPTSGSVFVDGQDL 70 (339)
T ss_pred EEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhcc------------CCCCCceEEEcCEec
Confidence 34444444443 223467899999999 99999999999999999999999 699999 99999776
Q ss_pred Ccc------ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccC
Q 007480 110 EME------IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVK 183 (602)
Q Consensus 110 ~~~------~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~ 183 (602)
..- ..+++++++||....+. ..||++|+.|+|.. -+.++...++++.+|+.+++|+++
T Consensus 71 ~~l~~~~Lr~~R~~IGMIFQhFnLLs---srTV~~NvA~PLei-------ag~~k~ei~~RV~elLelVgL~dk------ 134 (339)
T COG1135 71 TALSEAELRQLRQKIGMIFQHFNLLS---SRTVFENVAFPLEL-------AGVPKAEIKQRVAELLELVGLSDK------ 134 (339)
T ss_pred ccCChHHHHHHHhhccEEeccccccc---cchHHhhhhhhHhh-------cCCCHHHHHHHHHHHHHHcCChhh------
Confidence 531 24688999999876664 56999999999976 444444445555555555554332
Q ss_pred CcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCC
Q 007480 184 GQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDM 263 (602)
Q Consensus 184 ~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~ 263 (602)
.+.++.++|++++|+..++ ++.+ ..|.+ .|+||
T Consensus 135 ----------------------------------------~~~yP~qLSGGQKQRVaIA---RALa-~~P~i---LL~DE 167 (339)
T COG1135 135 ----------------------------------------ADRYPAQLSGGQKQRVAIA---RALA-NNPKI---LLCDE 167 (339)
T ss_pred ----------------------------------------hccCchhcCcchhhHHHHH---HHHh-cCCCE---EEecC
Confidence 2456778999999999998 5655 78988 99999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHHh
Q 007480 264 KDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVFN 329 (602)
Q Consensus 264 p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~n 329 (602)
+++.|||+..+.+-++.+.|. +.-.++-..+|+.| ...-+++.|..|.+|.+-..+++.+++.
T Consensus 168 aTSALDP~TT~sIL~LL~~In---~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~ 231 (339)
T COG1135 168 ATSALDPETTQSILELLKDIN---RELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFA 231 (339)
T ss_pred ccccCChHHHHHHHHHHHHHH---HHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhc
Confidence 999999999665555544444 33455667889866 4456788888889999999999888774
No 11
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.78 E-value=3.9e-19 Score=180.78 Aligned_cols=220 Identities=20% Similarity=0.226 Sum_probs=165.4
Q ss_pred EEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccC
Q 007480 43 LRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDG 115 (602)
Q Consensus 43 l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~ 115 (602)
+.+..+...+|+++++.+ ++++|+|||||||||||+.|+|+ .+|.+| |++.|+++... ...
T Consensus 8 ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~------------l~p~~G~V~l~g~~i~~~~~kelA 75 (258)
T COG1120 8 LSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGL------------LKPKSGEVLLDGKDIASLSPKELA 75 (258)
T ss_pred EEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhcc------------CCCCCCEEEECCCchhhcCHHHHh
Confidence 344445677999999998 99999999999999999999998 488999 99999988642 245
Q ss_pred cceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccch
Q 007480 116 SRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLV 195 (602)
Q Consensus 116 ~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~fl 195 (602)
+.++++.|...... ..+|+|.+.++. .|. ..
T Consensus 76 k~ia~vpQ~~~~~~---~~tV~d~V~~GR---------------------------------------------~p~-~~ 106 (258)
T COG1120 76 KKLAYVPQSPSAPF---GLTVYELVLLGR---------------------------------------------YPH-LG 106 (258)
T ss_pred hhEEEeccCCCCCC---CcEEeehHhhcC---------------------------------------------Ccc-cc
Confidence 78999999864432 458888776533 232 12
Q ss_pred hhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHH
Q 007480 196 WLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVK 274 (602)
Q Consensus 196 w~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e 274 (602)
|+- . .+....+.++++|+.++. +..++.+.++|++++|+..++ ++++ .+|.+ .|.|||++.||...
T Consensus 107 ~~~--~--~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iA---rALa-Q~~~i---LLLDEPTs~LDi~~-- 173 (258)
T COG1120 107 LFG--R--PSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIA---RALA-QETPI---LLLDEPTSHLDIAH-- 173 (258)
T ss_pred ccc--C--CCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHH---HHHh-cCCCE---EEeCCCccccCHHH--
Confidence 221 1 123345578889988876 556788999999999999888 5555 77777 89999999999999
Q ss_pred HHHHHHHHHhhhcCCCccceE-eeccHHHHHHHHHHHHHHcCCCCCCCcchHHHHhHHHHHHHH
Q 007480 275 RREQLKKLVASVTRPKIVQGK-FLNGNEFVAFMEQILEALNKGEIPSTGSLVEVFNKGILERCL 337 (602)
Q Consensus 275 ~~~~L~~~I~~~~~pK~l~g~-~ltG~~l~~lv~~yv~aINsG~vP~~~sl~e~~n~~av~~a~ 337 (602)
..++.+.+.++.+.+..+.. .++...++....+++-++++|++-..++..++.+.+.+++.+
T Consensus 174 -Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~~Vy 236 (258)
T COG1120 174 -QIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVY 236 (258)
T ss_pred -HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHHHHHHh
Confidence 44666677777666666654 445566777777777799999999999888888776665544
No 12
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.78 E-value=7.4e-19 Score=175.55 Aligned_cols=198 Identities=18% Similarity=0.228 Sum_probs=137.3
Q ss_pred EEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc------
Q 007480 43 LRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME------ 112 (602)
Q Consensus 43 l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~------ 112 (602)
+........+|+++++.| ++|+|+||||||||||||+|.|+ ..||.| +++.+.++...
T Consensus 11 y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~l------------d~pt~G~v~i~g~d~~~l~~~~~~ 78 (226)
T COG1136 11 YGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGL------------DKPTSGEVLINGKDLTKLSEKELA 78 (226)
T ss_pred eccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc------------cCCCCceEEECCEEcCcCCHHHHH
Confidence 433434467999999999 99999999999999999999998 578999 89999776531
Q ss_pred -ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCc
Q 007480 113 -IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEP 191 (602)
Q Consensus 113 -~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P 191 (602)
..+.++++|||+...+ +..|+.||+.+++.. .+......+...+.|...+++.+.
T Consensus 79 ~~R~~~iGfvFQ~~nLl---~~ltv~ENv~lpl~~-------~~~~~~~~~~~~~~l~~~lgl~~~-------------- 134 (226)
T COG1136 79 KLRRKKIGFVFQNFNLL---PDLTVLENVELPLLI-------AGKSAGRRKRAAEELLEVLGLEDR-------------- 134 (226)
T ss_pred HHHHHhEEEECccCCCC---CCCCHHHHHHhHHHH-------cCCChhHHHHHHHHHHHhcCChhh--------------
Confidence 1357799999987554 578999999987643 111111222333333333333211
Q ss_pred ccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHH
Q 007480 192 AKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPI 271 (602)
Q Consensus 192 ~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~ 271 (602)
..++.+.++|++++|+.+++ ++++ ..|.+ .|.|||+..||++
T Consensus 135 -------------------------------~~~~~p~eLSGGqqQRVAIA---RAL~-~~P~i---ilADEPTgnLD~~ 176 (226)
T COG1136 135 -------------------------------LLKKKPSELSGGQQQRVAIA---RALI-NNPKI---ILADEPTGNLDSK 176 (226)
T ss_pred -------------------------------hccCCchhcCHHHHHHHHHH---HHHh-cCCCe---EEeeCccccCChH
Confidence 11255789999999999999 6665 77887 8999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCccceEeeccHHHHHHHHHHHHHHcCCC
Q 007480 272 YVKRREQLKKLVASVTRPKIVQGKFLNGNEFVAFMEQILEALNKGE 317 (602)
Q Consensus 272 F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aINsG~ 317 (602)
-. +++.+.+.+..+.+......+|+.....-..+.+-.+.+|.
T Consensus 177 t~---~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 177 TA---KEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGK 219 (226)
T ss_pred HH---HHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCe
Confidence 84 45566666665555555678888554333334444445554
No 13
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=1e-18 Score=175.25 Aligned_cols=185 Identities=19% Similarity=0.241 Sum_probs=139.3
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeecc
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLDT 125 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~Dt 125 (602)
..+|+++++.| ++|+|+||||||||||||+|+|+ .+++.| |.+.|.++. ..+++++++||+.
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL------------~~p~~G~V~~~g~~v~--~p~~~~~~vFQ~~ 81 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGL------------EKPTSGEVLLDGRPVT--GPGPDIGYVFQED 81 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCcccC--CCCCCEEEEeccC
Confidence 77999999999 99999999999999999999999 589999 999999883 2368899999998
Q ss_pred ccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCc
Q 007480 126 EGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQG 205 (602)
Q Consensus 126 eG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g 205 (602)
..+ |+.|+.||+.|++.. ++. ..
T Consensus 82 ~Ll---PW~Tv~~NV~l~l~~-----------------------------------------------------~~~-~~ 104 (248)
T COG1116 82 ALL---PWLTVLDNVALGLEL-----------------------------------------------------RGK-SK 104 (248)
T ss_pred ccc---chhhHHhhheehhhc-----------------------------------------------------ccc-ch
Confidence 755 599999999998754 000 11
Q ss_pred ccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHh
Q 007480 206 KSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVA 284 (602)
Q Consensus 206 ~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~ 284 (602)
.+..+..+++|+.++. ...++.+.++|+|++|+.+++ ++++ .+|.+ .|.|||.+.||....+. +.+.+.
T Consensus 105 ~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiA---RAL~-~~P~l---LLlDEPFgALDalTR~~---lq~~l~ 174 (248)
T COG1116 105 AEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIA---RALA-TRPKL---LLLDEPFGALDALTREE---LQDELL 174 (248)
T ss_pred HhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHH---HHHh-cCCCE---EEEcCCcchhhHHHHHH---HHHHHH
Confidence 2234456677777765 334788899999999999999 6665 67887 89999999999999554 444444
Q ss_pred hhcCCCccceEeeccH-HHHHHHHHHHHHHcC
Q 007480 285 SVTRPKIVQGKFLNGN-EFVAFMEQILEALNK 315 (602)
Q Consensus 285 ~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINs 315 (602)
++.+....+-..+|+. .-+-++.+.+-.+.+
T Consensus 175 ~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~ 206 (248)
T COG1116 175 RLWEETRKTVLLVTHDVDEAVYLADRVVVLSN 206 (248)
T ss_pred HHHHhhCCEEEEEeCCHHHHHhhhCEEEEecC
Confidence 4433333455677873 334455555555655
No 14
>KOG2037 consensus Guanylate-binding protein [General function prediction only]
Probab=99.76 E-value=1.3e-17 Score=184.26 Aligned_cols=375 Identities=18% Similarity=0.183 Sum_probs=273.7
Q ss_pred CCCCcccEEeeC-CCcceEEecccccc-ccccc---cccEEEEEEECCCCCCHHHHHHHHHcCCC---------------
Q 007480 26 NFHQAFPIVEPD-PGHTKLRLSREGLE-TIRRI---TNPIAAIAVIGPYRSGKSFLLNQLLSLSC--------------- 85 (602)
Q Consensus 26 ~~~~~iplv~~d-~~~~~l~~~~eal~-iL~~I---s~~V~vVsIvG~~gsGKStLLn~L~g~~~--------------- 85 (602)
..+.+++.|... ....+|.+|+.|.. ++.++ +.|+..++++|..+.||||++|.++....
T Consensus 29 ~~p~~Vv~i~g~~~~gksfiln~la~~~~gf~~~s~~~~~~~~~w~w~~p~~k~~~~~l~Lld~eg~~~~~~~~~w~~~~ 108 (552)
T KOG2037|consen 29 KQPVAVVAIVGLYRTGKSFILNQLAGKRIGFSVASTDKPVTKGIWMWCVPHGKSFLLNLVLLDTEGLKGDNENDDWIFAL 108 (552)
T ss_pred cCCceEEEEEEEEcCCCceehhhhHhhhcCCCcccccccceeeEEEEEeecCCccchhhhhhccccccCCccchhhhhcc
Confidence 345556655442 23457999987654 33333 46778999999999999999999986532
Q ss_pred --CCCCcccccccCCCcceEEcCcccCc-cccCcceEEEeeccccccccCCCCchh-HHHHHHHhhhhhhhhcccchhhh
Q 007480 86 --DEGFGVGHMRDTKTKGIWVWGNPVEM-EIDGSRTSVFYLDTEGFESIGKSNVYD-DRIFALATVMSSVLIYNLPETIR 161 (602)
Q Consensus 86 --~~gF~vg~t~~~~TkGIwi~~~~~~~-~~~~~~~~vvl~DteG~~~~~~~tv~d-~~ifaLa~LLSS~~IyN~~~~i~ 161 (602)
..||.+..+....+.|||||..++.. ..++.+++..+.|++|..+. ..+..+ .-.|+++++.||+.|||....++
T Consensus 109 ~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~k~~~~l~~~~~a~~~-~~~~~~~~p~fa~tt~~~slqi~~~~q~i~ 187 (552)
T KOG2037|consen 109 APLLSSTWVYGSEGTINGIAMWQLPFVTELTEGIKVASSLMDTQGAFDD-QSTFRSCFPDFALTTMDSSLQIYNDSQNIQ 187 (552)
T ss_pred chhhcceeeccCCcccchheecccceeeecCCcceeccccccccccccc-cccHHHhcchhhceeeeeehhhhcccCcCC
Confidence 24677766777889999999988543 34678899999999995432 444444 47899999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCcc-------cHHHHHHHHHHhCCCCCCCCCchhhhhH
Q 007480 162 EADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGK-------SVQEMVHDALQRVPNDKGDKNIDMVNQI 234 (602)
Q Consensus 162 e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~-------t~~eyLe~aL~~~~~~~~~~~i~~ln~~ 234 (602)
++++++|..+++-..... .+..-.|.+-+-+++||++... ..+..+.+.|+. .+...+++-..
T Consensus 188 ed~l~~l~l~~~~g~~~l-----~~~~~kp~q~L~~~~~~~s~~~c~~~~~~~~~~~l~~~l~v-----~~~~~~el~~~ 257 (552)
T KOG2037|consen 188 EDDLQHLSLFTEYGRLAL-----AHLFKKPFQDLKFLVRDQSFPFCSYIGEHGGTKNLDNRLKV-----NGPQLEELVQL 257 (552)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHhccCcHHHHHHHHHHhhhhhhHHHHHhccccccccceee-----cccchHHHHHH
Confidence 999999999988654332 2223346555666779987432 112223333321 24567888899
Q ss_pred HHHHHhhcCCCcEEEccCccchhcc--cCCCCCCCCCHHHHHHHHHHHHHHh-----hhcCCCccceEeeccHHHHHHHH
Q 007480 235 RNSLAIMGDNSTAFSLPQPHLLRTK--LCDMKDEELDPIYVKRREQLKKLVA-----SVTRPKIVQGKFLNGNEFVAFME 307 (602)
Q Consensus 235 r~~i~~~f~~~~cf~L~~P~~~~~~--L~d~p~~~Ld~~F~e~~~~L~~~I~-----~~~~pK~l~g~~ltG~~l~~lv~ 307 (602)
|+.++.+|-+..|+.+++|.+.... ..+-...++.+.|..+ +...+. +....|..+|...|+..+.++++
T Consensus 258 r~~~~~~~~d~~c~~~~~~~l~~~~n~~~~~~~~~~~~~~~~q---l~~~~p~~~~q~~l~~~~~~~~~~t~~~~~e~fk 334 (552)
T KOG2037|consen 258 RVHARSCFEDLPCFLNPHPGLAVAENPAFDGKLEDHYNQFMGQ---LKVELPNLLLQELLDEKEISGREVTCREMKEYFK 334 (552)
T ss_pred HHHHHhhccCcchhhcCchhhhcccCchhhhhHHHHHHHHHHH---HhhhhhHHhhhhhccccccCccchhHHHHHHHHH
Confidence 9999999999999999999984422 1222223455555443 323333 34456778888999999999999
Q ss_pred HHHHHHc---CCCCCCCcchH----HHHhHHHHHHHHHHHHHHHhhcc---CCCChhHHHHHHHHHHHHHHHHHHHh-c-
Q 007480 308 QILEALN---KGEIPSTGSLV----EVFNKGILERCLKLYNERMAKVR---LPLPEQSLQDAHERSKKEAMDVFDVQ-H- 375 (602)
Q Consensus 308 ~yv~aIN---sG~vP~~~sl~----e~~n~~av~~a~~~Y~~~M~~~~---lP~~~eeL~~~H~~~~~eAl~~F~k~-s- 375 (602)
+|...+. .-.+|.+.++. ++.+..++..|...|...|++++ ..+.+..|...|...++.|+..|+.. .
T Consensus 335 ~y~~i~q~~~g~~lp~pks~l~~~aea~~l~~va~ak~~~~~~~Eev~~G~~~~~~s~L~~~~d~~k~~a~~~~~e~rK~ 414 (552)
T KOG2037|consen 335 AYDKIFQKKLGETLPGPKSMLKANAEASSLAAVAAAKDIYGPLMEEVKGGDIYLSPSGLNLKHDKVKELALKYFTEPRKG 414 (552)
T ss_pred HHHHHhhHhhhhhCcCcccHHHHHHHHhhHHHHHHHHHHHhhhhhhhhcCceeecccHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999997 44788887754 45567788899999999999764 23678999999999999999999985 2
Q ss_pred cC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007480 376 FG-RQHAKKSVMQLDEEIQEAYKNVIMANEYQSSKICESL 414 (602)
Q Consensus 376 fg-d~~~~~~~~~L~~~i~~~~~~~~~~Ne~~S~~~C~~~ 414 (602)
+| ++..++++++|++.+++.+...+..|+....-.|-.+
T Consensus 415 ig~~e~~~~~lq~LE~v~~~l~~~~~~~~~s~~~~~~~r~ 454 (552)
T KOG2037|consen 415 IGAEEVCQRYLQSLESVEEELLQTDQALTESKKLFLAART 454 (552)
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHhcc
Confidence 54 4447788899999999999999999988777666653
No 15
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.75 E-value=2.5e-18 Score=165.60 Aligned_cols=168 Identities=21% Similarity=0.251 Sum_probs=125.3
Q ss_pred EeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCccc
Q 007480 34 VEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPV 109 (602)
Q Consensus 34 v~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~ 109 (602)
|..++...+| +.+.++|++++++| +.+-++||||+||||||+.|.+. +.||+| ||+.+.++
T Consensus 2 I~f~~V~k~Y---~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~------------e~pt~G~i~~~~~dl 66 (223)
T COG2884 2 IRFENVSKAY---PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGE------------ERPTRGKILVNGHDL 66 (223)
T ss_pred eeehhhhhhc---CCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhh------------hcCCCceEEECCeec
Confidence 3444444444 23356899999988 99999999999999999999997 689999 99999887
Q ss_pred Ccc------ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccC
Q 007480 110 EME------IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVK 183 (602)
Q Consensus 110 ~~~------~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~ 183 (602)
..- ..++++++||||...+. ..|++||+.|++.+ ......
T Consensus 67 ~~l~~~~iP~LRR~IGvVFQD~rLL~---~~tvyeNVA~pL~v-------~G~~~~------------------------ 112 (223)
T COG2884 67 SRLKGREIPFLRRQIGVVFQDFRLLP---DRTVYENVALPLRV-------IGKPPR------------------------ 112 (223)
T ss_pred ccccccccchhhheeeeEeeeccccc---cchHhhhhhhhhhc-------cCCCHH------------------------
Confidence 641 14688999999998765 67999999999866 222211
Q ss_pred CcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCC
Q 007480 184 GQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCD 262 (602)
Q Consensus 184 ~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d 262 (602)
+..+.+..+|+.++. +....-+.++|++++|..+++ ++++ .+|.+ .|.|
T Consensus 113 -----------------------~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIA---RAiV-~~P~v---LlAD 162 (223)
T COG2884 113 -----------------------EIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIA---RAIV-NQPAV---LLAD 162 (223)
T ss_pred -----------------------HHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHH---HHHc-cCCCe---Eeec
Confidence 234445555555554 223344678899999999998 6665 88988 8999
Q ss_pred CCCCCCCHHHHHHHHHHH
Q 007480 263 MKDEELDPIYVKRREQLK 280 (602)
Q Consensus 263 ~p~~~Ld~~F~e~~~~L~ 280 (602)
||+..|||+....+-++-
T Consensus 163 EPTGNLDp~~s~~im~lf 180 (223)
T COG2884 163 EPTGNLDPDLSWEIMRLF 180 (223)
T ss_pred CCCCCCChHHHHHHHHHH
Confidence 999999999954444433
No 16
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=4.2e-18 Score=174.38 Aligned_cols=205 Identities=21% Similarity=0.296 Sum_probs=154.8
Q ss_pred ccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCc---ccCc-cccCcceE
Q 007480 48 EGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGN---PVEM-EIDGSRTS 119 (602)
Q Consensus 48 eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~---~~~~-~~~~~~~~ 119 (602)
.+..++++|++.| +.+++.|||||||||||++|+|+ +.||.| |.+.+. +... ....++++
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGL------------e~p~~G~I~~~~~~l~D~~~~~~~~R~VG 80 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGL------------ETPDAGRIRLNGRVLFDVSNLAVRDRKVG 80 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCc------------CCCCCceEEECCEeccchhccchhhccee
Confidence 3455777899888 99999999999999999999999 699999 999998 4332 22467899
Q ss_pred EEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhh
Q 007480 120 VFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQ 199 (602)
Q Consensus 120 vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vv 199 (602)
+||||...|. ++||.||+.|++.+. . -.|
T Consensus 81 fvFQ~YALF~---HmtVa~NIAFGl~~~---------~-------------------------------~~p-------- 109 (345)
T COG1118 81 FVFQHYALFP---HMTVADNIAFGLKVR---------K-------------------------------ERP-------- 109 (345)
T ss_pred EEEechhhcc---cchHHhhhhhccccc---------c-------------------------------cCC--------
Confidence 9999998664 889999999998650 0 011
Q ss_pred hccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHH
Q 007480 200 RDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQ 278 (602)
Q Consensus 200 RDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~ 278 (602)
+..+.+..+++.|+.+.. ..+++++.++|++++++.+++ ++.. ..|.. .|+|||...||..- +.+
T Consensus 110 ----~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALA---RALA-~eP~v---LLLDEPf~ALDa~v---r~~ 175 (345)
T COG1118 110 ----SEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALA---RALA-VEPKV---LLLDEPFGALDAKV---RKE 175 (345)
T ss_pred ----ChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHH---HHhh-cCCCe---EeecCCchhhhHHH---HHH
Confidence 112344555666666654 445788999999999999998 4444 77877 89999999999998 567
Q ss_pred HHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHHh
Q 007480 279 LKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVFN 329 (602)
Q Consensus 279 L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~n 329 (602)
|++.+.+....-......+|+.+ .+.-+.+.|-.+|+|.|-.+++..+++.
T Consensus 176 lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 176 LRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 77777666544345556777744 4445677777889999988888877753
No 17
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.74 E-value=5.4e-18 Score=168.66 Aligned_cols=217 Identities=19% Similarity=0.227 Sum_probs=158.8
Q ss_pred ccEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcC
Q 007480 31 FPIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWG 106 (602)
Q Consensus 31 iplv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~ 106 (602)
-|+|++.+...+| +...+++++++.| ++++|+|||||||||||+.|.|+ .+|++| ||+.|
T Consensus 6 ~~~I~vr~v~~~f----G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gl------------l~P~~GeI~i~G 69 (263)
T COG1127 6 EPLIEVRGVTKSF----GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGL------------LRPDKGEILIDG 69 (263)
T ss_pred cceEEEeeeeeec----CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhcc------------CCCCCCeEEEcC
Confidence 4677777654433 6778999999999 99999999999999999999999 599999 99999
Q ss_pred cccCcc------ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhc
Q 007480 107 NPVEME------IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYG 180 (602)
Q Consensus 107 ~~~~~~------~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~ 180 (602)
+++..- ..+++++++||....|. .+|+.||+.|.+.- |. .
T Consensus 70 ~~i~~ls~~~~~~ir~r~GvlFQ~gALFs---sltV~eNVafplre-------~~---~--------------------- 115 (263)
T COG1127 70 EDIPQLSEEELYEIRKRMGVLFQQGALFS---SLTVFENVAFPLRE-------HT---K--------------------- 115 (263)
T ss_pred cchhccCHHHHHHHHhheeEEeecccccc---ccchhHhhheehHh-------hc---c---------------------
Confidence 988642 13567999999887776 46999999997743 10 0
Q ss_pred ccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhc
Q 007480 181 RVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRT 258 (602)
Q Consensus 181 ~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~ 258 (602)
-|. ...++.+...|+.++.. ..+..+.++|++.+.+.+++ ++.++ .|.+
T Consensus 116 ---------lp~-------------~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLA---RAial-dPel--- 166 (263)
T COG1127 116 ---------LPE-------------SLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALA---RAIAL-DPEL--- 166 (263)
T ss_pred ---------CCH-------------HHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHH---HHHhc-CCCE---
Confidence 111 12234444555556542 13677899999999999998 66664 4666
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHHHHH-HHHHHHHHHcCCCCCCCcchHHHHh
Q 007480 259 KLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNEFVA-FMEQILEALNKGEIPSTGSLVEVFN 329 (602)
Q Consensus 259 ~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~l~~-lv~~yv~aINsG~vP~~~sl~e~~n 329 (602)
.+.|||+++|||.-....++|...+. +.-..+...+|+..-.. -+.+++..+.+|+|...++..+...
T Consensus 167 l~~DEPtsGLDPI~a~~~~~LI~~L~---~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 167 LFLDEPTSGLDPISAGVIDELIRELN---DALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred EEecCCCCCCCcchHHHHHHHHHHHH---HhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 78999999999998555555544443 33344556788744332 3667888889999999998877653
No 18
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.72 E-value=5.3e-17 Score=162.05 Aligned_cols=219 Identities=17% Similarity=0.199 Sum_probs=154.2
Q ss_pred EEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcc
Q 007480 33 IVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNP 108 (602)
Q Consensus 33 lv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~ 108 (602)
++++++....|.-......+|++|++.+ +++||+|++|||||||.+.|+|+ ++++.| |.+.|++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl------------~~p~~G~I~~~G~~ 70 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGL------------EKPSSGSILLDGKP 70 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcc------------cCCCCceEEECCcc
Confidence 4555554443433333446999999998 99999999999999999999999 689999 9999987
Q ss_pred cCcc----ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCC
Q 007480 109 VEME----IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKG 184 (602)
Q Consensus 109 ~~~~----~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~ 184 (602)
.... .....+.+||||+++.- .|..++.+.+.-++.. .. ... .+..+.++...++|.+.+
T Consensus 71 ~~~~~~~~~~~~~VQmVFQDp~~SL-nP~~tv~~~l~Epl~~-------~~-~~~-~~~~i~~~L~~VgL~~~~------ 134 (252)
T COG1124 71 LAPKKRAKAFYRPVQMVFQDPYSSL-NPRRTVGRILSEPLRP-------HG-LSK-SQQRIAELLDQVGLPPSF------ 134 (252)
T ss_pred cCccccchhhccceeEEecCCcccc-CcchhHHHHHhhhhcc-------CC-ccH-HHHHHHHHHHHcCCCHHH------
Confidence 7542 13577899999998843 3577777766665533 11 111 112244444444332111
Q ss_pred cccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCC
Q 007480 185 QDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMK 264 (602)
Q Consensus 185 e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p 264 (602)
.++.+.++|+|++|+.+++ ++.. ++|.+ .++|||
T Consensus 135 ---------------------------------------l~R~P~eLSGGQ~QRiaIA---RAL~-~~Pkl---LIlDEp 168 (252)
T COG1124 135 ---------------------------------------LDRRPHELSGGQRQRIAIA---RALI-PEPKL---LILDEP 168 (252)
T ss_pred ---------------------------------------HhcCchhcChhHHHHHHHH---HHhc-cCCCE---EEecCc
Confidence 1355678999999999998 5655 88988 899999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhcCCCccceEeecc-HHHHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 265 DEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNG-NEFVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 265 ~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG-~~l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
++.||.--. .++.+++.++.+...+.=..+++ -.++.++++.+-.+.+|.+-......+..
T Consensus 169 tSaLD~siQ---a~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 169 TSALDVSVQ---AQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred hhhhcHHHH---HHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 999999884 45566666665555566567777 56778899999999999886665554443
No 19
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=5.4e-17 Score=164.53 Aligned_cols=224 Identities=22% Similarity=0.296 Sum_probs=152.3
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGN 107 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~ 107 (602)
++|++++. .+.++.+ .+|++|++.+ ++++|+||||+|||||++.|+|+ .+|++| |.+.+.
T Consensus 3 ~~i~v~nl--~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGl------------l~p~~G~i~~~g~ 66 (254)
T COG1121 3 PMIEVENL--TVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGL------------LKPSSGEIKIFGK 66 (254)
T ss_pred cEEEEeee--EEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CcCCcceEEEccc
Confidence 45666643 3444433 5999999988 89999999999999999999998 489999 999998
Q ss_pred ccCccccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCccc
Q 007480 108 PVEMEIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDV 187 (602)
Q Consensus 108 ~~~~~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~ 187 (602)
+......+..++||.|-..--.++ ..||+|.+..+.-
T Consensus 67 ~~~~~~~~~~IgYVPQ~~~~d~~f-P~tV~d~V~~g~~------------------------------------------ 103 (254)
T COG1121 67 PVRKRRKRLRIGYVPQKSSVDRSF-PITVKDVVLLGRY------------------------------------------ 103 (254)
T ss_pred cccccccCCeEEEcCcccccCCCC-CcCHHHHHHccCc------------------------------------------
Confidence 876544457899999965221111 3466665543210
Q ss_pred ccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCC
Q 007480 188 AFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDE 266 (602)
Q Consensus 188 ~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~ 266 (602)
+ ...|+ |- .+....+.++++|+.++. +..++.+.++|++++|+.-++ ++++ ..|.+ .++|||+.
T Consensus 104 ---~-~~g~~--~~--~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lA---RAL~-~~p~l---llLDEP~~ 168 (254)
T COG1121 104 ---G-KKGWF--RR--LNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLA---RALA-QNPDL---LLLDEPFT 168 (254)
T ss_pred ---c-ccccc--cc--ccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHH---HHhc-cCCCE---EEecCCcc
Confidence 1 12232 11 123446889999999987 556899999999999999998 6665 88988 89999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHHHHHHHHHHHHHH--cCCCCCCCcchHHHHhHHHHHH
Q 007480 267 ELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNEFVAFMEQILEAL--NKGEIPSTGSLVEVFNKGILER 335 (602)
Q Consensus 267 ~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aI--NsG~vP~~~sl~e~~n~~av~~ 335 (602)
++|+.... .+-+.+.++.+. ...-..+++ .+ ..+..|++.+ =++.+-+.++..+......+.+
T Consensus 169 gvD~~~~~---~i~~lL~~l~~e-g~tIl~vtH-DL-~~v~~~~D~vi~Ln~~~~~~G~~~~~~~~~~l~~ 233 (254)
T COG1121 169 GVDVAGQK---EIYDLLKELRQE-GKTVLMVTH-DL-GLVMAYFDRVICLNRHLIASGPPEEVLTEENLEK 233 (254)
T ss_pred cCCHHHHH---HHHHHHHHHHHC-CCEEEEEeC-Cc-HHhHhhCCEEEEEcCeeEeccChhhccCHHHHHH
Confidence 99999954 455555554332 323334444 32 3456676655 1345556666666655444433
No 20
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.71 E-value=1.8e-17 Score=158.72 Aligned_cols=192 Identities=22% Similarity=0.259 Sum_probs=146.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-ccCcceEEEeeccccccccCCCCchh
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-IDGSRTSVFYLDTEGFESIGKSNVYD 138 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-~~~~~~~vvl~DteG~~~~~~~tv~d 138 (602)
++|+|+||+|+|||||||.++|. +.|..| ||+.|+++... +..+-++++||+...|. +.||..
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF------------~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFa---HLtV~q 90 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGF------------ETPASGEILINGVDHTASPPAERPVSMLFQENNLFA---HLTVAQ 90 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhc------------cCCCCceEEEcCeecCcCCcccCChhhhhhccccch---hhhhhh
Confidence 89999999999999999999998 689999 99999998753 34567899999987664 678888
Q ss_pred HHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHh
Q 007480 139 DRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQR 218 (602)
Q Consensus 139 ~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~ 218 (602)
|+-++++ |. + - -....++.++.++..
T Consensus 91 NigLGl~---------------------------------------------P~-L-k-------L~a~~r~~v~~aa~~ 116 (231)
T COG3840 91 NIGLGLS---------------------------------------------PG-L-K-------LNAEQREKVEAAAAQ 116 (231)
T ss_pred hhcccCC---------------------------------------------cc-c-c-------cCHHHHHHHHHHHHH
Confidence 8776542 21 0 0 012345667777777
Q ss_pred CCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEee
Q 007480 219 VPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFL 297 (602)
Q Consensus 219 ~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~l 297 (602)
++. ...++.+.++|++++|+.+++ +|++=++|.. |.|||.+.|||.- +.+...+|..++..+.++-..+
T Consensus 117 vGl~~~~~RLP~~LSGGqRQRvALA---RclvR~~Pil----LLDEPFsALdP~L---R~eMl~Lv~~l~~E~~~TllmV 186 (231)
T COG3840 117 VGLAGFLKRLPGELSGGQRQRVALA---RCLVREQPIL----LLDEPFSALDPAL---RAEMLALVSQLCDERKMTLLMV 186 (231)
T ss_pred hChhhHhhhCccccCchHHHHHHHH---HHHhccCCeE----EecCchhhcCHHH---HHHHHHHHHHHHHhhCCEEEEE
Confidence 765 223567789999999999999 8999889984 8999999999999 5667777777777788887777
Q ss_pred cc-HHHHHHHHHHHHHHcCCCCCCCcchHHHHhHH
Q 007480 298 NG-NEFVAFMEQILEALNKGEIPSTGSLVEVFNKG 331 (602)
Q Consensus 298 tG-~~l~~lv~~yv~aINsG~vP~~~sl~e~~n~~ 331 (602)
|+ +.-+.-+...+-.+.+|.|-..++..+..+..
T Consensus 187 TH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 187 THHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred eCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 77 44444455556666889887777776666543
No 21
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.70 E-value=5.5e-17 Score=169.38 Aligned_cols=200 Identities=21% Similarity=0.244 Sum_probs=143.1
Q ss_pred cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc--ccCcceEEEe
Q 007480 49 GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME--IDGSRTSVFY 122 (602)
Q Consensus 49 al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~--~~~~~~~vvl 122 (602)
...+|+++++.+ +++|++||||||||||||+|+|+ ..+++| |.+.|.+.... ..++.++++.
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl------------~~p~~G~i~i~G~~~~~~~~~~~~~igy~~ 84 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL------------LKPTSGEILVLGYDVVKEPAKVRRRIGYVP 84 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCC------------cCCCceEEEEcCEeCccCHHHHHhheEEEc
Confidence 467999999998 89999999999999999999999 478999 99999876542 2356799999
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
+++..+ +..|++|++.|.... |......+++.++++...++|.+
T Consensus 85 ~~~~~~---~~lT~~e~l~~~~~l-------~~~~~~~~~~~~~~~l~~~~L~~-------------------------- 128 (293)
T COG1131 85 QEPSLY---PELTVRENLEFFARL-------YGLSKEEAEERIEELLELFGLED-------------------------- 128 (293)
T ss_pred cCCCCC---ccccHHHHHHHHHHH-------hCCChhHHHHHHHHHHHHcCCch--------------------------
Confidence 887643 478999999997765 43322222333444443333321
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~ 282 (602)
..++.+..+|+++++...++ +..+.+|.+ .+.|||+++|||.. +.++++.
T Consensus 129 --------------------~~~~~~~~lS~G~kqrl~ia----~aL~~~P~l---liLDEPt~GLDp~~---~~~~~~~ 178 (293)
T COG1131 129 --------------------KANKKVRTLSGGMKQRLSIA----LALLHDPEL---LILDEPTSGLDPES---RREIWEL 178 (293)
T ss_pred --------------------hhCcchhhcCHHHHHHHHHH----HHHhcCCCE---EEECCCCcCCCHHH---HHHHHHH
Confidence 11345778888988888887 555688988 88999999999999 5677888
Q ss_pred HhhhcCCCccceEeeccHHHHHH--HHHHHHHHcCCCCCCCcchHHH
Q 007480 283 VASVTRPKIVQGKFLNGNEFVAF--MEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 283 I~~~~~pK~l~g~~ltG~~l~~l--v~~yv~aINsG~vP~~~sl~e~ 327 (602)
|.++.+... ....++.+.+.+. +++++-.|++|.+-..+++.+.
T Consensus 179 l~~l~~~g~-~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l 224 (293)
T COG1131 179 LRELAKEGG-VTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEEL 224 (293)
T ss_pred HHHHHhCCC-cEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 877765433 2344555444433 3456667799988777765543
No 22
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=2.1e-17 Score=167.10 Aligned_cols=208 Identities=22% Similarity=0.245 Sum_probs=148.0
Q ss_pred EEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccC----cccc
Q 007480 43 LRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVE----MEID 114 (602)
Q Consensus 43 l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~----~~~~ 114 (602)
+.+.+. ..+|+++++.+ +.++|+|+||||||||++.|+|+ .+|+.| |++.+.+.. ....
T Consensus 11 ~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GL------------l~p~~G~v~~~g~~~~~~~~~~~~ 77 (235)
T COG1122 11 FRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGL------------LKPTSGEVLVDGLDTSSEKSLLEL 77 (235)
T ss_pred EEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCc------------CcCCCCEEEECCeeccchhhHHHh
Confidence 444444 67899999988 79999999999999999999999 489999 999998865 2235
Q ss_pred CcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccc
Q 007480 115 GSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKL 194 (602)
Q Consensus 115 ~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~f 194 (602)
++++++|||+++-..- ..||.|.+.|++.. +
T Consensus 78 ~~~vG~VfQnpd~q~~--~~tV~~evafg~~n-----------------------------------------------~ 108 (235)
T COG1122 78 RQKVGLVFQNPDDQLF--GPTVEDEVAFGLEN-----------------------------------------------L 108 (235)
T ss_pred hcceEEEEECcccccc--cCcHHHHHhhchhh-----------------------------------------------c
Confidence 6889999999854321 34677777765532 1
Q ss_pred hhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHH
Q 007480 195 VWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYV 273 (602)
Q Consensus 195 lw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~ 273 (602)
.. .....++.++++|+.++. ...++.+..+|++++++.+++ +.+..+|.+ .++|||++.|||.-
T Consensus 109 g~-------~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA----~vLa~~P~i---liLDEPta~LD~~~- 173 (235)
T COG1122 109 GL-------PREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIA----GVLAMGPEI---LLLDEPTAGLDPKG- 173 (235)
T ss_pred CC-------CHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhh----HHHHcCCCE---EEEcCCCCCCCHHH-
Confidence 00 112356677778877775 334678899999999999998 555578988 89999999999999
Q ss_pred HHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHHh
Q 007480 274 KRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVFN 329 (602)
Q Consensus 274 e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~n 329 (602)
..++.+.+.++......+-..+|+.+ +...+.+.+-.+++|.+-..++..++++
T Consensus 174 --~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 174 --RRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred --HHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 45666666666433233445666633 2223344455568888866666655554
No 23
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=6.7e-17 Score=160.51 Aligned_cols=227 Identities=19% Similarity=0.260 Sum_probs=152.3
Q ss_pred EEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcc
Q 007480 33 IVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNP 108 (602)
Q Consensus 33 lv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~ 108 (602)
++++++.+..| +...++|++|++.+ +.|+|+|++|+||||||+.|.|+ .++|.| |.+.+..
T Consensus 3 ~i~~~nl~k~y---p~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl------------~d~t~G~i~~~g~~ 67 (258)
T COG3638 3 MIEVKNLSKTY---PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL------------VDPTSGEILFNGVQ 67 (258)
T ss_pred eEEEeeeeeec---CCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcc------------cCCCcceEEecccc
Confidence 34555544333 36677999999988 99999999999999999999998 488999 9999976
Q ss_pred cCcc------ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhccc
Q 007480 109 VEME------IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRV 182 (602)
Q Consensus 109 ~~~~------~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~ 182 (602)
+... ..+.+++++||+. +.+++.++++|++.+..- |.+ .+..+
T Consensus 68 i~~~~~k~lr~~r~~iGmIfQ~~---nLv~r~sv~~NVl~grl~-------~~s----------~~~sl----------- 116 (258)
T COG3638 68 ITKLKGKELRKLRRDIGMIFQQF---NLVPRLSVLENVLLGRLG-------YTS----------TWRSL----------- 116 (258)
T ss_pred hhccchHHHHHHHHhceeEeccC---CcccccHHHHHHHhhhcc-------cch----------HHHHH-----------
Confidence 5431 1357899999876 445688999998876422 100 00000
Q ss_pred CCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccC
Q 007480 183 KGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLC 261 (602)
Q Consensus 183 ~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~ 261 (602)
|.|+ .+......-++|+.++. +.+-+....+|++++|+.+++ ++.+ ..|.+ .|.
T Consensus 117 -----------fglf-------sk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIA---RaL~-Q~pki---ILA 171 (258)
T COG3638 117 -----------FGLF-------SKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIA---RALV-QQPKI---ILA 171 (258)
T ss_pred -----------hCCC-------CHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHH---HHHh-cCCCE---Eec
Confidence 1111 12233334456666664 333455678999999999999 6655 88988 899
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHHHHHHHHHHHHHH---cCCCCCCCcchHHHHhHHHHHHH
Q 007480 262 DMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNEFVAFMEQILEAL---NKGEIPSTGSLVEVFNKGILERC 336 (602)
Q Consensus 262 d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aI---NsG~vP~~~sl~e~~n~~av~~a 336 (602)
|||.+.|||...+ +..+++.+..+...++ .+..-+..++++.|.+-| ..|.+---++..+ .+..++++.
T Consensus 172 DEPvasLDp~~a~---~Vm~~l~~in~~~g~T--vi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~e-l~~~~~~~i 243 (258)
T COG3638 172 DEPVASLDPESAK---KVMDILKDINQEDGIT--VIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASE-LTDEALDEI 243 (258)
T ss_pred CCcccccChhhHH---HHHHHHHHHHHHcCCE--EEEEechHHHHHHHHhhheEecCCcEEEeCChhh-hhHHHHHHH
Confidence 9999999999955 4555555544333333 344445567777777765 7788866666555 344444443
No 24
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=4.7e-16 Score=152.44 Aligned_cols=214 Identities=21% Similarity=0.279 Sum_probs=147.8
Q ss_pred eccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-----ccC
Q 007480 45 LSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-----IDG 115 (602)
Q Consensus 45 ~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-----~~~ 115 (602)
+-....++|++|++++ .|.|++||+||||||||+.+.+.. .+-+ .....| |++.|+++... ..+
T Consensus 15 ~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmn-----dl~~--~~r~~G~v~~~g~ni~~~~~d~~~lR 87 (253)
T COG1117 15 LYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN-----DLIP--GARVEGEVLLDGKNIYDPKVDVVELR 87 (253)
T ss_pred EEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhc-----ccCc--CceEEEEEEECCeeccCCCCCHHHHH
Confidence 3345678999999988 999999999999999999998763 0111 122468 99999887642 146
Q ss_pred cceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccch
Q 007480 116 SRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLV 195 (602)
Q Consensus 116 ~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~fl 195 (602)
+++++|||.+.-|. .+++||+.|++.. +.... +.+++ .++-+-+- --+
T Consensus 88 r~vGMVFQkPnPFp----~SIydNVayG~r~-------~g~~~----~~lde---iVe~sLk~--------------AaL 135 (253)
T COG1117 88 RRVGMVFQKPNPFP----MSIYDNVAYGLRL-------HGIKD----KELDE---IVESSLKK--------------AAL 135 (253)
T ss_pred HHheeeccCCCCCC----chHHHHHHHhHHh-------hccch----HHHHH---HHHHHHHH--------------hHh
Confidence 88999999986663 6999999999876 33322 22222 11110000 023
Q ss_pred hhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHH
Q 007480 196 WLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKR 275 (602)
Q Consensus 196 w~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~ 275 (602)
|= -+++.| ++....+|++++|+..++ ++.. ..|.. .|.|||++.|||.....
T Consensus 136 Wd-------------EVKDrL--------~~sa~~LSGGQQQRLcIA---RalA-v~PeV---lLmDEPtSALDPIsT~k 187 (253)
T COG1117 136 WD-------------EVKDRL--------HKSALGLSGGQQQRLCIA---RALA-VKPEV---LLMDEPTSALDPISTLK 187 (253)
T ss_pred HH-------------HhHHHh--------hCCccCCChhHHHHHHHH---HHHh-cCCcE---EEecCcccccCchhHHH
Confidence 41 112222 234556899999998888 6666 67877 89999999999999555
Q ss_pred HHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHHhH
Q 007480 276 REQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVFNK 330 (602)
Q Consensus 276 ~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~n~ 330 (602)
+++| |.++. +..+-..+|+.| -+..+.+|..-+..|++...+...+++.+
T Consensus 188 IEeL---i~eLk--~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~ 238 (253)
T COG1117 188 IEEL---ITELK--KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTN 238 (253)
T ss_pred HHHH---HHHHH--hccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcC
Confidence 5554 44543 556667888854 67789999999999998887776666643
No 25
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.68 E-value=1.1e-16 Score=172.39 Aligned_cols=216 Identities=19% Similarity=0.281 Sum_probs=148.6
Q ss_pred ccEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcC
Q 007480 31 FPIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWG 106 (602)
Q Consensus 31 iplv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~ 106 (602)
.|++.+++.+..+ ....+|+++++.+ ++++|+|||||||||||++|+|+ .+++.| |++.|
T Consensus 12 ~~~L~l~~l~~~~----~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl------------~~p~~G~I~~~g 75 (375)
T PRK09452 12 SPLVELRGISKSF----DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF------------ETPDSGRIMLDG 75 (375)
T ss_pred CceEEEEEEEEEE----CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC------------CCCCceEEEECC
Confidence 4556666543322 2345899999988 89999999999999999999998 588999 99999
Q ss_pred cccCc-cccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCc
Q 007480 107 NPVEM-EIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQ 185 (602)
Q Consensus 107 ~~~~~-~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e 185 (602)
.++.. ....+.+++++||...+ ++.++.||+.|++.. ++......
T Consensus 76 ~~i~~~~~~~r~ig~vfQ~~~lf---p~ltv~eNi~~~l~~-------~~~~~~~~------------------------ 121 (375)
T PRK09452 76 QDITHVPAENRHVNTVFQSYALF---PHMTVFENVAFGLRM-------QKTPAAEI------------------------ 121 (375)
T ss_pred EECCCCCHHHCCEEEEecCcccC---CCCCHHHHHHHHHhh-------cCCCHHHH------------------------
Confidence 87643 12346799999997544 477999999987643 21111111
Q ss_pred ccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCC
Q 007480 186 DVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMK 264 (602)
Q Consensus 186 ~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p 264 (602)
.+.++++++.++. ...++.+.++|++++++.+++ ++++ .+|.+ .|.|||
T Consensus 122 -----------------------~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLA---RaL~-~~P~l---lLLDEP 171 (375)
T PRK09452 122 -----------------------TPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIA---RAVV-NKPKV---LLLDES 171 (375)
T ss_pred -----------------------HHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH---HHHh-cCCCE---EEEeCC
Confidence 1122233333222 112456778999999999998 5554 67877 899999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHHh
Q 007480 265 DEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVFN 329 (602)
Q Consensus 265 ~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~n 329 (602)
++.||+.. ++++.+.+.+..+.....-..+|+.. .+..+.+.+-.+++|.+-..++..+.++
T Consensus 172 ~s~LD~~~---r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~ 234 (375)
T PRK09452 172 LSALDYKL---RKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYE 234 (375)
T ss_pred CCcCCHHH---HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999 45666666665543344456777743 3344566677778898877676666544
No 26
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.3e-16 Score=170.91 Aligned_cols=201 Identities=20% Similarity=0.288 Sum_probs=140.8
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc-cccCcceEEEeec
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM-EIDGSRTSVFYLD 124 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~-~~~~~~~~vvl~D 124 (602)
..+|+++++.+ ++++|+|||||||||||++|+|+ .++++| |++.|+++.. ....+.+++++||
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl------------~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~ 84 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL------------ERITSGEIWIGGRVVNELEPADRDIAMVFQN 84 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCC------------CCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 45899999988 89999999999999999999998 588999 9999987643 1234679999999
Q ss_pred cccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCC
Q 007480 125 TEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQ 204 (602)
Q Consensus 125 teG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~ 204 (602)
...+ ++.|++||+.|++.. ++......
T Consensus 85 ~~lf---p~~tv~eNi~~~~~~-------~~~~~~~~------------------------------------------- 111 (356)
T PRK11650 85 YALY---PHMSVRENMAYGLKI-------RGMPKAEI------------------------------------------- 111 (356)
T ss_pred cccc---CCCCHHHHHHhHHhh-------cCCCHHHH-------------------------------------------
Confidence 7544 478999999987643 11111111
Q ss_pred cccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHH
Q 007480 205 GKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLV 283 (602)
Q Consensus 205 g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I 283 (602)
.+.++++|+.++. +..++.+.++|++++++.+++ ++++ .+|.+ .|.|||++.||+... +++.+.+
T Consensus 112 ----~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalA---RAL~-~~P~l---lLLDEP~s~LD~~~r---~~l~~~l 177 (356)
T PRK11650 112 ----EERVAEAARILELEPLLDRKPRELSGGQRQRVAMG---RAIV-REPAV---FLFDEPLSNLDAKLR---VQMRLEI 177 (356)
T ss_pred ----HHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCcccCCHHHH---HHHHHHH
Confidence 1222333333332 112456778999999999998 5655 78888 899999999999994 4566666
Q ss_pred hhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHHh
Q 007480 284 ASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVFN 329 (602)
Q Consensus 284 ~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~n 329 (602)
.+..+.....-..+|+.. .+..+.+.+-.|++|.+-..++..+..+
T Consensus 178 ~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~ 224 (356)
T PRK11650 178 QRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYE 224 (356)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence 555433234445666643 3334455666678998877777666543
No 27
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.68 E-value=1e-16 Score=170.71 Aligned_cols=200 Identities=19% Similarity=0.287 Sum_probs=137.3
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc------cCcceE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI------DGSRTS 119 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~------~~~~~~ 119 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|+ .++++| |++.|.++.... .+.+++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl------------~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig 85 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL------------ERPTSGSVIVDGQDLTTLSNSELTKARRQIG 85 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCceEEEECCEECCcCCHHHHHHHhcCEE
Confidence 46899999988 89999999999999999999998 589999 999998775311 245799
Q ss_pred EEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhh
Q 007480 120 VFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQ 199 (602)
Q Consensus 120 vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vv 199 (602)
+++|+...+ +..|+.||+.+++.. .+......
T Consensus 86 ~v~Q~~~l~---~~~tv~eni~~~~~~-------~~~~~~~~-------------------------------------- 117 (343)
T TIGR02314 86 MIFQHFNLL---SSRTVFGNVALPLEL-------DNTPKDEI-------------------------------------- 117 (343)
T ss_pred EEECCcccc---ccCcHHHHHHHHHHH-------cCCCHHHH--------------------------------------
Confidence 999987544 357899999876532 11111111
Q ss_pred hccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHH
Q 007480 200 RDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQ 278 (602)
Q Consensus 200 RDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~ 278 (602)
.+.+.++|+.++. +..++.+.++|++++++..++ ++++ ..|.+ .++|||++.|||... ..
T Consensus 118 ---------~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IA---RAL~-~~P~i---LLlDEPts~LD~~t~---~~ 178 (343)
T TIGR02314 118 ---------KRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIA---RALA-SNPKV---LLCDEATSALDPATT---QS 178 (343)
T ss_pred ---------HHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH---HHHH-hCCCE---EEEeCCcccCCHHHH---HH
Confidence 1122233333332 112456778999999999998 5554 67877 899999999999994 55
Q ss_pred HHHHHhhhcCCCccceEeeccHHH-HHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 279 LKKLVASVTRPKIVQGKFLNGNEF-VAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 279 L~~~I~~~~~pK~l~g~~ltG~~l-~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
+.+++.+..+....+-..+|+.+- +..+++.+-.|++|.+-..++..+.+
T Consensus 179 i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 179 ILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 666666554332344456666432 22344555566889886666666654
No 28
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.3e-16 Score=170.47 Aligned_cols=213 Identities=18% Similarity=0.282 Sum_probs=147.6
Q ss_pred EEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcc
Q 007480 33 IVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNP 108 (602)
Q Consensus 33 lv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~ 108 (602)
++.+++.+.++ ....+|+++++.+ ++++|+|||||||||||++|+|+ .+++.| |.+.+.+
T Consensus 6 ~l~~~~l~~~~----~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl------------~~p~~G~I~~~g~~ 69 (351)
T PRK11432 6 FVVLKNITKRF----GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGL------------EKPTEGQIFIDGED 69 (351)
T ss_pred EEEEEeEEEEE----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCC------------CCCCceEEEECCEE
Confidence 45555543333 2345799999988 89999999999999999999998 589999 9999987
Q ss_pred cCcc-ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCccc
Q 007480 109 VEME-IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDV 187 (602)
Q Consensus 109 ~~~~-~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~ 187 (602)
+... ..++.+++++||...+ ++.|+.||+.|++.. ++.....
T Consensus 70 i~~~~~~~r~ig~vfQ~~~lf---p~~tv~eNi~~~l~~-------~~~~~~~--------------------------- 112 (351)
T PRK11432 70 VTHRSIQQRDICMVFQSYALF---PHMSLGENVGYGLKM-------LGVPKEE--------------------------- 112 (351)
T ss_pred CCCCCHHHCCEEEEeCCcccC---CCCCHHHHHHHHHhH-------cCCCHHH---------------------------
Confidence 6532 2346799999997544 478999999997643 2211111
Q ss_pred ccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCC
Q 007480 188 AFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDE 266 (602)
Q Consensus 188 ~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~ 266 (602)
..+.++++++.++. ...++.+.++|++++++.+++ ++++ .+|.+ .|.|||++
T Consensus 113 --------------------~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLA---RaL~-~~P~l---LLLDEP~s 165 (351)
T PRK11432 113 --------------------RKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALA---RALI-LKPKV---LLFDEPLS 165 (351)
T ss_pred --------------------HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH---HHHH-cCCCE---EEEcCCcc
Confidence 12223333333332 112456778999999999998 5554 67887 89999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 267 ELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 267 ~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
.||+.. ++++++.+.+..+....+-..+|+.. .+..+.+.+-.+++|.+-..++..+.+
T Consensus 166 ~LD~~~---r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 166 NLDANL---RRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred cCCHHH---HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999 45666666665443334445666643 333455677777999887777766554
No 29
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=2.1e-16 Score=170.35 Aligned_cols=218 Identities=17% Similarity=0.240 Sum_probs=150.2
Q ss_pred CcccEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEE
Q 007480 29 QAFPIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWV 104 (602)
Q Consensus 29 ~~iplv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi 104 (602)
..-+++..++.+.++ ....+|+++++.+ ++++|+|||||||||||++|+|+ .+++.| |++
T Consensus 15 ~~~~~l~l~~v~~~~----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl------------~~p~~G~I~i 78 (377)
T PRK11607 15 ALTPLLEIRNLTKSF----DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGF------------EQPTAGQIML 78 (377)
T ss_pred cCCceEEEEeEEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC------------CCCCceEEEE
Confidence 334567777654433 2345899999988 89999999999999999999998 588999 999
Q ss_pred cCcccCc-cccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccC
Q 007480 105 WGNPVEM-EIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVK 183 (602)
Q Consensus 105 ~~~~~~~-~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~ 183 (602)
.|+++.. ...++.+++++||...+ ++.|+.||+.|++.. .+....
T Consensus 79 ~g~~i~~~~~~~r~ig~vfQ~~~lf---p~ltv~eNi~~~l~~-------~~~~~~------------------------ 124 (377)
T PRK11607 79 DGVDLSHVPPYQRPINMMFQSYALF---PHMTVEQNIAFGLKQ-------DKLPKA------------------------ 124 (377)
T ss_pred CCEECCCCCHHHCCEEEEeCCCccC---CCCCHHHHHHHHHHH-------cCCCHH------------------------
Confidence 9987643 12356799999997654 478999999987643 111000
Q ss_pred CcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCC
Q 007480 184 GQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCD 262 (602)
Q Consensus 184 ~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d 262 (602)
...+.++++++.++. +..++.+.++|++++++.+++ ++++ .+|.+ .|.|
T Consensus 125 -----------------------~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLA---RAL~-~~P~l---LLLD 174 (377)
T PRK11607 125 -----------------------EIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALA---RSLA-KRPKL---LLLD 174 (377)
T ss_pred -----------------------HHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH---HHHh-cCCCE---EEEe
Confidence 112233344444332 222567788999999999998 5554 78887 8999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHHh
Q 007480 263 MKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVFN 329 (602)
Q Consensus 263 ~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~n 329 (602)
||++.||+...+ ++.+.+.+..+.....-..+|+.. .+..+.+.+-.|++|.+-..++..+...
T Consensus 175 EP~s~LD~~~r~---~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 175 EPMGALDKKLRD---RMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred CCcccCCHHHHH---HHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 999999999954 455555444332234445666643 3344566677778998877777666653
No 30
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.67 E-value=2.5e-16 Score=165.42 Aligned_cols=212 Identities=16% Similarity=0.162 Sum_probs=141.6
Q ss_pred ccEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcC
Q 007480 31 FPIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWG 106 (602)
Q Consensus 31 iplv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~ 106 (602)
.+++.+++.+.+| ....+|+++++.| ++++++||||||||||+++|+|+ .++++| |++.|
T Consensus 5 ~~~i~i~~l~k~~----~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl------------~~p~~G~v~i~G 68 (306)
T PRK13537 5 VAPIDFRNVEKRY----GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL------------THPDAGSISLCG 68 (306)
T ss_pred CceEEEEeEEEEE----CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC------------CCCCceEEEECC
Confidence 3567776654443 2356899999998 89999999999999999999998 488999 99999
Q ss_pred cccCcc--ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCC
Q 007480 107 NPVEME--IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKG 184 (602)
Q Consensus 107 ~~~~~~--~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~ 184 (602)
.++... ..+..+++++++...+ +..|+.|++.|.... |+.........+
T Consensus 69 ~~~~~~~~~~~~~ig~v~q~~~~~---~~~tv~e~l~~~~~~-------~~~~~~~~~~~~------------------- 119 (306)
T PRK13537 69 EPVPSRARHARQRVGVVPQFDNLD---PDFTVRENLLVFGRY-------FGLSAAAARALV------------------- 119 (306)
T ss_pred EecccchHHHHhcEEEEeccCcCC---CCCcHHHHHHHHHHH-------cCCCHHHHHHHH-------------------
Confidence 876432 1246789999986433 357899998764332 322111111112
Q ss_pred cccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCC
Q 007480 185 QDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDM 263 (602)
Q Consensus 185 e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~ 263 (602)
+.+++.++. ...++.+..+|++++++..++ .++ +..|.+ .+.||
T Consensus 120 ----------------------------~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la---~aL-~~~P~l---llLDE 164 (306)
T PRK13537 120 ----------------------------PPLLEFAKLENKADAKVGELSGGMKRRLTLA---RAL-VNDPDV---LVLDE 164 (306)
T ss_pred ----------------------------HHHHHHcCCchHhcCchhhCCHHHHHHHHHH---HHH-hCCCCE---EEEeC
Confidence 222222221 112455678899999998888 444 578888 89999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHHH--HHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 264 KDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNEF--VAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 264 p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~l--~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
|+++|||.. +..+.+.|.++.+ ... ...++.+.+ +..+++++-.|++|.+-..++..+.
T Consensus 165 Pt~gLD~~~---~~~l~~~l~~l~~-~g~-till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l 225 (306)
T PRK13537 165 PTTGLDPQA---RHLMWERLRSLLA-RGK-TILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHAL 225 (306)
T ss_pred CCcCCCHHH---HHHHHHHHHHHHh-CCC-EEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999 4567777766532 222 234444333 3345566777799988777766544
No 31
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.67 E-value=1.8e-16 Score=169.56 Aligned_cols=202 Identities=20% Similarity=0.281 Sum_probs=142.9
Q ss_pred cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc-cccCcceEEEee
Q 007480 49 GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM-EIDGSRTSVFYL 123 (602)
Q Consensus 49 al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~-~~~~~~~~vvl~ 123 (602)
...+|+++++.+ ++++|+|||||||||||++|+|+ .+++.| |.+.|+++.. ....+.+++++|
T Consensus 16 ~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl------------~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q 83 (353)
T TIGR03265 16 AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL------------ERQTAGTIYQGGRDITRLPPQKRDYGIVFQ 83 (353)
T ss_pred CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCC------------CCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 345899999888 89999999999999999999998 589999 9999987743 123467999999
Q ss_pred ccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccC
Q 007480 124 DTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFL 203 (602)
Q Consensus 124 DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~ 203 (602)
|...+ ++.|+.||+.|++.. ......
T Consensus 84 ~~~lf---p~~tv~eNi~~~~~~-------~~~~~~-------------------------------------------- 109 (353)
T TIGR03265 84 SYALF---PNLTVADNIAYGLKN-------RGMGRA-------------------------------------------- 109 (353)
T ss_pred CcccC---CCCcHHHHHHHHHHh-------cCCCHH--------------------------------------------
Confidence 97555 478999999987643 111111
Q ss_pred CcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 007480 204 QGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 204 ~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~ 282 (602)
...+.++++++.++. +..++.+.++|++++++.+++ ++++ .+|.+ .|.|||.+.||+.. +.++++.
T Consensus 110 ---~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLA---RaL~-~~P~l---lLLDEP~s~LD~~~---r~~l~~~ 176 (353)
T TIGR03265 110 ---EVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALA---RALA-TSPGL---LLLDEPLSALDARV---REHLRTE 176 (353)
T ss_pred ---HHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHH---HHHh-cCCCE---EEEcCCcccCCHHH---HHHHHHH
Confidence 112223344444332 222567788999999999998 5554 67887 89999999999999 4566666
Q ss_pred HhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHHh
Q 007480 283 VASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVFN 329 (602)
Q Consensus 283 I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~n 329 (602)
+.+..+....+-..+|+.. .+..+.+.+-.|++|.+-..++..+.++
T Consensus 177 L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 177 IRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 6655433334445666643 2334556677779999877777666654
No 32
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.67 E-value=1.5e-16 Score=158.83 Aligned_cols=235 Identities=18% Similarity=0.215 Sum_probs=168.8
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGN 107 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~ 107 (602)
|+...++.+.+| .++.+++++++.| ++++++||||+|||||+|.|.|. .+||.| |.+.|+
T Consensus 3 ~lL~v~~l~k~F----GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~------------~~P~~G~v~~~G~ 66 (250)
T COG0411 3 PLLEVRGLSKRF----GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGF------------YKPSSGTVIFRGR 66 (250)
T ss_pred ceeeeccceeec----CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccc------------ccCCCceEEECCc
Confidence 345555544444 7899999999999 89999999999999999999998 589999 999999
Q ss_pred ccCccc----cCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccC
Q 007480 108 PVEMEI----DGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVK 183 (602)
Q Consensus 108 ~~~~~~----~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~ 183 (602)
++.... .+..++--||.+.-|. .+|+.||++.+... ..+
T Consensus 67 ~it~l~p~~iar~Gi~RTFQ~~rlF~---~lTVlENv~va~~~---------~~~------------------------- 109 (250)
T COG0411 67 DITGLPPHRIARLGIARTFQITRLFP---GLTVLENVAVGAHA---------RLG------------------------- 109 (250)
T ss_pred ccCCCCHHHHHhccceeecccccccC---CCcHHHHHHHHhhh---------hhh-------------------------
Confidence 886422 3456677888887665 67999999887532 000
Q ss_pred CcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCC
Q 007480 184 GQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCD 262 (602)
Q Consensus 184 ~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d 262 (602)
+ ..++|.- |-........+.....|+.++. +..+....+++.+++.+..++ ++.. ..|.+ .|+|
T Consensus 110 -----~--~~~l~~~-~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIA---rALa-~~P~l---LLLD 174 (250)
T COG0411 110 -----L--SGLLGRP-RARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIA---RALA-TQPKL---LLLD 174 (250)
T ss_pred -----h--hhhhccc-cchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHH---HHHh-cCCCE---EEec
Confidence 0 0122210 0000112445666667777775 445677888999999999888 5655 78888 8999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHHhHHHHHHHH
Q 007480 263 MKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVFNKGILERCL 337 (602)
Q Consensus 263 ~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~n~~av~~a~ 337 (602)
||..+|+|.- .+++.+.|.+..+...+.-..+.+.| +.--+++++..++.|++-..++..++.++..|.+|+
T Consensus 175 EPaAGln~~e---~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~dp~VieAY 247 (250)
T COG0411 175 EPAAGLNPEE---TEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNPRVIEAY 247 (250)
T ss_pred CccCCCCHHH---HHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhcCHHhHHHh
Confidence 9999999998 56677777766443334445666644 444466677777999999999999999888777764
No 33
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.66 E-value=1.3e-16 Score=159.72 Aligned_cols=205 Identities=17% Similarity=0.135 Sum_probs=145.9
Q ss_pred cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEEE
Q 007480 49 GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSVF 121 (602)
Q Consensus 49 al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~vv 121 (602)
...+++++|+.| ++++++|||||||||+|++|.++ ..||+| |.+.|+++... .-+.+++|+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrL------------iept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRL------------IEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcc------------cCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 667899999998 99999999999999999999999 489999 99999988652 246789999
Q ss_pred eeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhc
Q 007480 122 YLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRD 201 (602)
Q Consensus 122 l~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRD 201 (602)
+|..- .+|+.|+.+|+.+...+ -...+.-.++++++|..+++|. |
T Consensus 81 iQqig---LFPh~Tv~eNIa~VP~L-------~~w~k~~i~~r~~ELl~lvgL~---------------p---------- 125 (309)
T COG1125 81 IQQIG---LFPHLTVAENIATVPKL-------LGWDKERIKKRADELLDLVGLD---------------P---------- 125 (309)
T ss_pred hhhcc---cCCCccHHHHHHhhhhh-------cCCCHHHHHHHHHHHHHHhCCC---------------H----------
Confidence 88653 34689999999886654 2333333344555555555542 1
Q ss_pred cCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHH
Q 007480 202 FLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKK 281 (602)
Q Consensus 202 f~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~ 281 (602)
.+ ..++++.++|++++|+.-.+ ++.+ ..|.+ .|.|||.+.|||-.+++..+...
T Consensus 126 -------~~------------~~~RyP~eLSGGQQQRVGv~---RALA-adP~i---lLMDEPFgALDpI~R~~lQ~e~~ 179 (309)
T COG1125 126 -------SE------------YADRYPHELSGGQQQRVGVA---RALA-ADPPI---LLMDEPFGALDPITRKQLQEEIK 179 (309)
T ss_pred -------HH------------HhhcCchhcCcchhhHHHHH---HHHh-cCCCe---EeecCCccccChhhHHHHHHHHH
Confidence 11 12467788999999988776 5555 45655 78999999999999655544433
Q ss_pred HHhhhcCCCccceEeeccHHH-HHHHHHHHHHHcCCCCCCCcchHHHHh
Q 007480 282 LVASVTRPKIVQGKFLNGNEF-VAFMEQILEALNKGEIPSTGSLVEVFN 329 (602)
Q Consensus 282 ~I~~~~~pK~l~g~~ltG~~l-~~lv~~yv~aINsG~vP~~~sl~e~~n 329 (602)
.+...+ ..+-..+|+.+- +-.+-+.+..+++|++-...+..++..
T Consensus 180 ~lq~~l---~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 180 ELQKEL---GKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred HHHHHh---CCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 333322 122356777443 334666777789999988888777764
No 34
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.65 E-value=4.2e-16 Score=167.19 Aligned_cols=201 Identities=16% Similarity=0.210 Sum_probs=142.6
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCc--c-eEEcCcccCcc-ccCcceEEEe
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTK--G-IWVWGNPVEME-IDGSRTSVFY 122 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~Tk--G-Iwi~~~~~~~~-~~~~~~~vvl 122 (602)
..+|+++++.+ ++++|+|||||||||||++|+|+ .+++. | |++.|.++... ...+.+++++
T Consensus 18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl------------~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vf 85 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGF------------VKAAGLTGRIAIADRDLTHAPPHKRGLALLF 85 (362)
T ss_pred eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCCCEEEEECCEECCCCCHHHCCEEEEE
Confidence 45899999988 89999999999999999999998 58889 9 99999876421 1246799999
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
||...+ ++.|++||+.|++.. +......
T Consensus 86 Q~~~l~---p~~tv~enl~~~l~~-------~~~~~~~------------------------------------------ 113 (362)
T TIGR03258 86 QNYALF---PHLKVEDNVAFGLRA-------QKMPKAD------------------------------------------ 113 (362)
T ss_pred CCcccC---CCCcHHHHHHHHHHH-------cCCCHHH------------------------------------------
Confidence 997644 478999999987643 1111111
Q ss_pred CCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKK 281 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~ 281 (602)
..+.++++++.++. +..++.+.++|++++++.+++ ++++ .+|.+ .|.|||++.||+.. +.++.+
T Consensus 114 -----~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLA---RAL~-~~P~l---lLLDEP~s~LD~~~---r~~l~~ 178 (362)
T TIGR03258 114 -----IAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIA---RAIA-IEPDV---LLLDEPLSALDANI---RANMRE 178 (362)
T ss_pred -----HHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHH---HHHh-cCCCE---EEEcCccccCCHHH---HHHHHH
Confidence 11223333433332 122566788999999999998 5554 78888 89999999999999 556666
Q ss_pred HHhhhcCCC-ccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHHh
Q 007480 282 LVASVTRPK-IVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVFN 329 (602)
Q Consensus 282 ~I~~~~~pK-~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~n 329 (602)
.+.++.+.. ..+-..+|+.. .+..+.+.+-.+++|.+-..++..+.++
T Consensus 179 ~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 179 EIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred HHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 666554322 33445666643 3344566777789999877777766654
No 35
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.65 E-value=5.9e-16 Score=164.82 Aligned_cols=213 Identities=16% Similarity=0.163 Sum_probs=140.8
Q ss_pred ccEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcC
Q 007480 31 FPIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWG 106 (602)
Q Consensus 31 iplv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~ 106 (602)
.+++.+++.+.+| ....+|+++++.| ++++++||||+|||||+++|+|+ .+|++| |.++|
T Consensus 39 ~~~i~i~nl~k~y----~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl------------~~p~~G~i~i~G 102 (340)
T PRK13536 39 TVAIDLAGVSKSY----GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM------------TSPDAGKITVLG 102 (340)
T ss_pred ceeEEEEEEEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC------------CCCCceEEEECC
Confidence 3567776654443 3446899999988 89999999999999999999998 488999 99999
Q ss_pred cccCcc--ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCC
Q 007480 107 NPVEME--IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKG 184 (602)
Q Consensus 107 ~~~~~~--~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~ 184 (602)
.++... ..+..+++++++...+ +..++.|++.+.... |........+
T Consensus 103 ~~~~~~~~~~~~~ig~v~q~~~~~---~~~tv~e~l~~~~~~-------~~~~~~~~~~--------------------- 151 (340)
T PRK13536 103 VPVPARARLARARIGVVPQFDNLD---LEFTVRENLLVFGRY-------FGMSTREIEA--------------------- 151 (340)
T ss_pred EECCcchHHHhccEEEEeCCccCC---CCCcHHHHHHHHHHH-------cCCCHHHHHH---------------------
Confidence 876432 1246789999886433 356888988763322 2211110111
Q ss_pred cccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCC
Q 007480 185 QDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDM 263 (602)
Q Consensus 185 e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~ 263 (602)
.++.+++.++. ...++.+.++|+++++...++ .+ ++..|.+ .++||
T Consensus 152 --------------------------~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA---~a-L~~~P~l---LiLDE 198 (340)
T PRK13536 152 --------------------------VIPSLLEFARLESKADARVSDLSGGMKRRLTLA---RA-LINDPQL---LILDE 198 (340)
T ss_pred --------------------------HHHHHHHHcCCchhhCCChhhCCHHHHHHHHHH---HH-HhcCCCE---EEEEC
Confidence 11222222221 112456778999999998888 34 4478887 89999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHHHH--HHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 264 KDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNEFV--AFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 264 p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~l~--~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
|+++|||.. +.++.+.|.+..+ .... ..++.+.+. .-+.+++-.|++|.+-..+++.+..
T Consensus 199 Pt~gLD~~~---r~~l~~~l~~l~~-~g~t-ilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~ 260 (340)
T PRK13536 199 PTTGLDPHA---RHLIWERLRSLLA-RGKT-ILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALI 260 (340)
T ss_pred CCCCCCHHH---HHHHHHHHHHHHh-CCCE-EEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999 5567777766543 2222 334433332 3345666677999987777765543
No 36
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.64 E-value=5.5e-16 Score=166.84 Aligned_cols=200 Identities=14% Similarity=0.210 Sum_probs=136.3
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-ccCcceEEEeec
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-IDGSRTSVFYLD 124 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-~~~~~~~vvl~D 124 (602)
..+|+++++.+ ++++|+|||||||||||++|+|+ .+++.| |++.++++... .....+++++|+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl------------~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~ 83 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL------------EDITSGDLFIGEKRMNDVPPAERGVGMVFQS 83 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC------------CCCCceEEEECCEECCCCCHhHCCEEEEeCC
Confidence 45899999988 89999999999999999999998 588999 99999876421 123568999998
Q ss_pred cccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCC
Q 007480 125 TEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQ 204 (602)
Q Consensus 125 teG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~ 204 (602)
...+ +..|+.||+.|.+.. ++.....
T Consensus 84 ~~l~---~~~tv~eni~~~~~~-------~~~~~~~-------------------------------------------- 109 (369)
T PRK11000 84 YALY---PHLSVAENMSFGLKL-------AGAKKEE-------------------------------------------- 109 (369)
T ss_pred cccC---CCCCHHHHHHhHHhh-------cCCCHHH--------------------------------------------
Confidence 7544 367999999886532 1111000
Q ss_pred cccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHH
Q 007480 205 GKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLV 283 (602)
Q Consensus 205 g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I 283 (602)
..+.++++++.++. ...++.+.++|++++++..++ +++ +..|.+ .|+|||++.||+... +.+.+.+
T Consensus 110 ---~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLA---raL-~~~P~l---LLLDEPts~LD~~~~---~~l~~~L 176 (369)
T PRK11000 110 ---INQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIG---RTL-VAEPSV---FLLDEPLSNLDAALR---VQMRIEI 176 (369)
T ss_pred ---HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHH---HHH-hcCCCE---EEEeCCcccCCHHHH---HHHHHHH
Confidence 11122333333332 112456778999999999998 444 477887 899999999999994 4555555
Q ss_pred hhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 284 ASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 284 ~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
.+..+.....-..+|+.. .+..+.+.+-.+++|.+-..++..+..
T Consensus 177 ~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 177 SRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred HHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 554332233345666643 333445566677889887666665554
No 37
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=8.6e-16 Score=154.62 Aligned_cols=200 Identities=20% Similarity=0.280 Sum_probs=128.2
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc------ccCcceE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME------IDGSRTS 119 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~------~~~~~~~ 119 (602)
..+|+++++.+ ++++|+||||||||||+++|+|. .+++.| |.+.+.++... ..+..++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~------------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL------------LRPDSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEEccccChhhHHHHhcceE
Confidence 45899999888 89999999999999999999998 478999 99998776421 1235689
Q ss_pred EEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhh
Q 007480 120 VFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQ 199 (602)
Q Consensus 120 vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vv 199 (602)
+++|+...+ +..++.|++.++... +.. .+.
T Consensus 81 ~v~q~~~~~---~~~tv~~~l~~~~~~-------~~~---~~~------------------------------------- 110 (235)
T cd03261 81 MLFQSGALF---DSLTVFENVAFPLRE-------HTR---LSE------------------------------------- 110 (235)
T ss_pred EEccCcccC---CCCcHHHHHHHHHhh-------ccC---CCH-------------------------------------
Confidence 999886543 256888888765321 100 000
Q ss_pred hccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHH
Q 007480 200 RDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQ 278 (602)
Q Consensus 200 RDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~ 278 (602)
....+.++++++..+. ...++.+.++|++++++..++ .+++ ..|.+ .+.|||+++||+... ..
T Consensus 111 ------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia---~al~-~~p~l---lllDEPt~~LD~~~~---~~ 174 (235)
T cd03261 111 ------EEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALA---RALA-LDPEL---LLYDEPTAGLDPIAS---GV 174 (235)
T ss_pred ------HHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH---HHHh-cCCCE---EEecCCcccCCHHHH---HH
Confidence 0011222333333322 112456778999999999988 4554 66777 799999999999994 55
Q ss_pred HHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 279 LKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 279 L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
+.+.+.+..+.....-..+++.. ....+.+.+-.+++|.+...++..+.
T Consensus 175 l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 175 IDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred HHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHH
Confidence 66666555332122233444432 22233344555688887655554433
No 38
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=1.1e-15 Score=152.28 Aligned_cols=192 Identities=16% Similarity=0.192 Sum_probs=123.0
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc--ccCcceEEEee
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME--IDGSRTSVFYL 123 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~--~~~~~~~vvl~ 123 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|. .+++.| |++.+.++... .....++++++
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL------------LKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEecCcChHHHhhcEEEecC
Confidence 45899999888 99999999999999999999998 478999 99988765321 12346889999
Q ss_pred ccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccC
Q 007480 124 DTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFL 203 (602)
Q Consensus 124 DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~ 203 (602)
+...+ +..++.|++.+.... ++.......+.+
T Consensus 81 ~~~~~---~~~tv~~~l~~~~~~-------~~~~~~~~~~~~-------------------------------------- 112 (220)
T cd03265 81 DLSVD---DELTGWENLYIHARL-------YGVPGAERRERI-------------------------------------- 112 (220)
T ss_pred Ccccc---ccCcHHHHHHHHHHH-------cCCCHHHHHHHH--------------------------------------
Confidence 87533 356888888765432 111111011112
Q ss_pred CcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 007480 204 QGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 204 ~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~ 282 (602)
+.+++.++. ...++.+.++|++++++..++ .++ +.+|.+ .+.|||++.||+... +.+.+.
T Consensus 113 ---------~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la---~al-~~~p~l---lllDEPt~~LD~~~~---~~l~~~ 173 (220)
T cd03265 113 ---------DELLDFVGLLEAADRLVKTYSGGMRRRLEIA---RSL-VHRPEV---LFLDEPTIGLDPQTR---AHVWEY 173 (220)
T ss_pred ---------HHHHHHcCCHHHhhCChhhCCHHHHHHHHHH---HHH-hcCCCE---EEEcCCccCCCHHHH---HHHHHH
Confidence 222222221 111345678899999998888 444 477877 899999999999994 566666
Q ss_pred HhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCC
Q 007480 283 VASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPS 320 (602)
Q Consensus 283 I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~ 320 (602)
+.+..+.....-..+++.. ....+.+.+-.+++|.+-.
T Consensus 174 l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~ 212 (220)
T cd03265 174 IEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA 212 (220)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence 6655432222334454422 2222334455557777643
No 39
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.1e-15 Score=153.81 Aligned_cols=205 Identities=17% Similarity=0.190 Sum_probs=127.4
Q ss_pred cEEeeCCCcceEEeccc--cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEc
Q 007480 32 PIVEPDPGHTKLRLSRE--GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVW 105 (602)
Q Consensus 32 plv~~d~~~~~l~~~~e--al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~ 105 (602)
|++.+++.+ +.+... ...+|+++++.+ ++++|+||||||||||+++|+|. .++++| |++.
T Consensus 4 ~~l~~~~l~--~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~ 69 (233)
T PRK11629 4 ILLQCDNLC--KRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL------------DTPTSGDVIFN 69 (233)
T ss_pred ceEEEEeEE--EEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC------------CCCCceEEEEC
Confidence 456666543 333221 145899999988 89999999999999999999998 488999 9999
Q ss_pred CcccCccc-------cCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhh
Q 007480 106 GNPVEMEI-------DGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEF 178 (602)
Q Consensus 106 ~~~~~~~~-------~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i 178 (602)
++++.... .+..++++++++..+ +..++.||+.+.+.. ++.....
T Consensus 70 g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~---~~~tv~e~l~~~~~~-------~~~~~~~------------------ 121 (233)
T PRK11629 70 GQPMSKLSSAAKAELRNQKLGFIYQFHHLL---PDFTALENVAMPLLI-------GKKKPAE------------------ 121 (233)
T ss_pred CEEcCcCCHHHHHHHHhccEEEEecCcccC---CCCCHHHHHHHHHHh-------cCCCHHH------------------
Confidence 98764311 024689999986433 346888988775421 1111000
Q ss_pred hcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchh
Q 007480 179 YGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLR 257 (602)
Q Consensus 179 ~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~ 257 (602)
..+.++++++.++. +..++.+.++|++++++..++ .+++ ..|.+
T Consensus 122 -----------------------------~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la---~al~-~~p~l-- 166 (233)
T PRK11629 122 -----------------------------INSRALEMLAAVGLEHRANHRPSELSGGERQRVAIA---RALV-NNPRL-- 166 (233)
T ss_pred -----------------------------HHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH---HHHh-cCCCE--
Confidence 11122233333322 111345678899999998888 4444 67777
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCC
Q 007480 258 TKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEI 318 (602)
Q Consensus 258 ~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~v 318 (602)
.+.|||+++||+... +.+.+.+.+..+.+...-..+++.. ....+. .+-.+++|.+
T Consensus 167 -llLDEPt~~LD~~~~---~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~-~~~~l~~G~i 223 (233)
T PRK11629 167 -VLADEPTGNLDARNA---DSIFQLLGELNRLQGTAFLVVTHDLQLAKRMS-RQLEMRDGRL 223 (233)
T ss_pred -EEEeCCCCCCCHHHH---HHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhC-EEEEEECCEE
Confidence 899999999999994 5566666655332222334455422 222222 3334466655
No 40
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.63 E-value=8.6e-16 Score=160.84 Aligned_cols=198 Identities=16% Similarity=0.163 Sum_probs=130.3
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc--cCcceEEEee
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI--DGSRTSVFYL 123 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~--~~~~~~vvl~ 123 (602)
..+|+++++.+ ++++|+||||||||||+++|+|+ .++++| |.+.|.++.... .+..++++++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl------------~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q 73 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTL------------LRPTSGTARVAGYDVVREPRKVRRSIGIVPQ 73 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEEcccCHHHHHhhcEEecC
Confidence 35799999888 89999999999999999999998 488999 999998764311 2356899988
Q ss_pred ccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccC
Q 007480 124 DTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFL 203 (602)
Q Consensus 124 DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~ 203 (602)
+...+ +..|+.|++.+.... ++.......
T Consensus 74 ~~~~~---~~~tv~e~l~~~~~~-------~~~~~~~~~----------------------------------------- 102 (302)
T TIGR01188 74 YASVD---EDLTGRENLEMMGRL-------YGLPKDEAE----------------------------------------- 102 (302)
T ss_pred CCCCC---CCCcHHHHHHHHHHH-------cCCCHHHHH-----------------------------------------
Confidence 86433 356889988764322 221111111
Q ss_pred CcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 007480 204 QGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 204 ~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~ 282 (602)
+.++++|+.++. ...++.+.++|++++++..++ .++ +..|.+ .++|||+++|||.. +..+.+.
T Consensus 103 ------~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la---~al-~~~p~l---llLDEPt~gLD~~~---~~~l~~~ 166 (302)
T TIGR01188 103 ------ERAEELLELFELGEAADRPVGTYSGGMRRRLDIA---ASL-IHQPDV---LFLDEPTTGLDPRT---RRAIWDY 166 (302)
T ss_pred ------HHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHH---HHH-hcCCCE---EEEeCCCcCCCHHH---HHHHHHH
Confidence 112223333322 112456778999999999888 444 477877 89999999999999 4566666
Q ss_pred HhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 283 VASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 283 I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
+.+..+ +...-..+++.. ....+.+.+-.|++|.+-..++..+.
T Consensus 167 l~~~~~-~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l 211 (302)
T TIGR01188 167 IRALKE-EGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211 (302)
T ss_pred HHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 666532 222223444422 22334555666788988666655443
No 41
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.63 E-value=1.1e-15 Score=163.55 Aligned_cols=205 Identities=19% Similarity=0.292 Sum_probs=141.3
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-ccCcceEEEeec
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-IDGSRTSVFYLD 124 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-~~~~~~~vvl~D 124 (602)
..+|+++++.+ ++++|+|||||||||||++|+|. .+++.| |++.|+++... ..++.+++++||
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl------------~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~ 82 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGL------------EHQTSGHIRFHGTDVSRLHARDRKVGFVFQH 82 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEECCEECCCCCHHHCCEEEEecC
Confidence 45899999988 89999999999999999999998 588999 99999876431 224579999999
Q ss_pred cccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCC
Q 007480 125 TEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQ 204 (602)
Q Consensus 125 teG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~ 204 (602)
...+ +..++.||+.|++.. +......+
T Consensus 83 ~~l~---p~~tv~eni~~~~~~-------~~~~~~~~------------------------------------------- 109 (353)
T PRK10851 83 YALF---RHMTVFDNIAFGLTV-------LPRRERPN------------------------------------------- 109 (353)
T ss_pred cccC---CCCcHHHHHHhhhhh-------cccccCCC-------------------------------------------
Confidence 6544 467999999886532 10000000
Q ss_pred cccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHH
Q 007480 205 GKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLV 283 (602)
Q Consensus 205 g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I 283 (602)
.....+.++++|+.++. ...++.+.++|++++++.+++ ++++ .+|.+ .+.|||++.||+.. ++++.+.+
T Consensus 110 ~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalA---rAL~-~~P~l---lLLDEP~s~LD~~~---r~~l~~~L 179 (353)
T PRK10851 110 AAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALA---RALA-VEPQI---LLLDEPFGALDAQV---RKELRRWL 179 (353)
T ss_pred HHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCCccCCHHH---HHHHHHHH
Confidence 01122334444444433 223567789999999999998 5554 77887 89999999999999 45666666
Q ss_pred hhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHHh
Q 007480 284 ASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVFN 329 (602)
Q Consensus 284 ~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~n 329 (602)
.++.+.....-..+|+.. .+..+.+.+-.+++|.+-..++..+.++
T Consensus 180 ~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 180 RQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 665432233445666633 3344556666778998876666666543
No 42
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.62 E-value=1.7e-15 Score=150.47 Aligned_cols=171 Identities=19% Similarity=0.243 Sum_probs=113.2
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc-------cCcce
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI-------DGSRT 118 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~-------~~~~~ 118 (602)
..+|+++++.+ ++++|+||||||||||+++|+|. .+++.| |++.+.++.... .+..+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl------------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 84 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL------------DRPTSGEVRVDGTDISKLSEKELAAFRRRHI 84 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC------------cCCCceeEEECCEehhhcchhHHHHHHhhcE
Confidence 45899999988 89999999999999999999998 488999 999988764211 13468
Q ss_pred EEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhh
Q 007480 119 SVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLI 198 (602)
Q Consensus 119 ~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~v 198 (602)
++++++...+ +..++.|++.++... +......
T Consensus 85 ~~~~q~~~~~---~~~tv~e~l~~~~~~-------~~~~~~~-------------------------------------- 116 (218)
T cd03255 85 GFVFQSFNLL---PDLTALENVELPLLL-------AGVPKKE-------------------------------------- 116 (218)
T ss_pred EEEeeccccC---CCCcHHHHHHHHHhh-------cCCCHHH--------------------------------------
Confidence 9999886543 245888888765421 1100000
Q ss_pred hhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHH
Q 007480 199 QRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRRE 277 (602)
Q Consensus 199 vRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~ 277 (602)
..+.++++++.++. ...++.+.++|+++++...++ .++. .+|.+ .+.|||+++||+... +
T Consensus 117 ---------~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la---~al~-~~p~l---llLDEP~~~LD~~~~---~ 177 (218)
T cd03255 117 ---------RRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIA---RALA-NDPKI---ILADEPTGNLDSETG---K 177 (218)
T ss_pred ---------HHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHH---HHHc-cCCCE---EEEcCCcccCCHHHH---H
Confidence 01122223333222 111345678899999999888 4444 67777 899999999999994 5
Q ss_pred HHHHHHhhhcCCCccceEeecc
Q 007480 278 QLKKLVASVTRPKIVQGKFLNG 299 (602)
Q Consensus 278 ~L~~~I~~~~~pK~l~g~~ltG 299 (602)
.+.+.+.+..+.....-..+++
T Consensus 178 ~l~~~l~~~~~~~~~tii~~sH 199 (218)
T cd03255 178 EVMELLRELNKEAGTTIVVVTH 199 (218)
T ss_pred HHHHHHHHHHHhcCCeEEEEEC
Confidence 5666666554322223334444
No 43
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.62 E-value=2.4e-15 Score=150.81 Aligned_cols=198 Identities=15% Similarity=0.201 Sum_probs=124.4
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc----cCcceEEE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI----DGSRTSVF 121 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~----~~~~~~vv 121 (602)
..+|+++++.+ ++++|+|+|||||||||++|+|. .+++.| |++.|.++.... .+..++++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL------------VKPDSGKILLDGQDITKLPMHKRARLGIGYL 80 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEECCEecccCCHhHHHhccEEEe
Confidence 45899999888 89999999999999999999998 488999 999998764211 12458899
Q ss_pred eeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhc
Q 007480 122 YLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRD 201 (602)
Q Consensus 122 l~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRD 201 (602)
+++...+ +..++.|++.+.... +.........
T Consensus 81 ~q~~~~~---~~~tv~~~l~~~~~~-------~~~~~~~~~~-------------------------------------- 112 (232)
T cd03218 81 PQEASIF---RKLTVEENILAVLEI-------RGLSKKEREE-------------------------------------- 112 (232)
T ss_pred cCCcccc---ccCcHHHHHHHHHHh-------cCCCHHHHHH--------------------------------------
Confidence 8886433 346888887764321 1110000011
Q ss_pred cCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHH
Q 007480 202 FLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLK 280 (602)
Q Consensus 202 f~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~ 280 (602)
.++..++..+. ...++.+.++|++++++..++ .+++ .+|.+ .+.|||++.||+...+ .+.
T Consensus 113 ---------~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la---~al~-~~p~l---lllDEPt~~LD~~~~~---~~~ 173 (232)
T cd03218 113 ---------KLEELLEEFHITHLRKSKASSLSGGERRRVEIA---RALA-TNPKF---LLLDEPFAGVDPIAVQ---DIQ 173 (232)
T ss_pred ---------HHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH---HHHh-cCCCE---EEecCCcccCCHHHHH---HHH
Confidence 11122222211 111345678899999998887 4444 67777 7899999999999954 555
Q ss_pred HHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 281 KLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 281 ~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
+.+.+..+ +...-..+++.. ...-+.+.+-.+++|.+-..++..+.
T Consensus 174 ~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 174 KIIKILKD-RGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred HHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 55554432 122223444432 23333445556688887555554443
No 44
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=1.3e-15 Score=162.44 Aligned_cols=200 Identities=20% Similarity=0.312 Sum_probs=131.1
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc------cCcceE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI------DGSRTS 119 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~------~~~~~~ 119 (602)
..+|+++++.+ ++++|+||||||||||+++|+|+ .++++| |++.|.++.... .+..++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl------------~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig 85 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLL------------ERPTSGRVLVDGQDLTALSEKELRKARRQIG 85 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC------------CCCCceEEEECCEECCcCCHHHHHHHhcCEE
Confidence 46899999988 89999999999999999999998 488999 999998764211 135789
Q ss_pred EEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhh
Q 007480 120 VFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQ 199 (602)
Q Consensus 120 vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vv 199 (602)
+++++...+ +..++.||+.+.+.. ++.......+
T Consensus 86 ~v~q~~~l~---~~~tv~eni~~~~~~-------~~~~~~~~~~------------------------------------ 119 (343)
T PRK11153 86 MIFQHFNLL---SSRTVFDNVALPLEL-------AGTPKAEIKA------------------------------------ 119 (343)
T ss_pred EEeCCCccC---CCCcHHHHHHHHHHH-------cCCCHHHHHH------------------------------------
Confidence 999987533 356899998876432 2111111111
Q ss_pred hccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHH
Q 007480 200 RDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQ 278 (602)
Q Consensus 200 RDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~ 278 (602)
.+++.++.++. ...++.+.++|++++++..++ .+++ ..|.+ .++|||++.||+... ..
T Consensus 120 -----------~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lA---raL~-~~p~i---LlLDEPts~LD~~~~---~~ 178 (343)
T PRK11153 120 -----------RVTELLELVGLSDKADRYPAQLSGGQKQRVAIA---RALA-SNPKV---LLCDEATSALDPATT---RS 178 (343)
T ss_pred -----------HHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH---HHHH-cCCCE---EEEeCCcccCCHHHH---HH
Confidence 12222222222 111355678999999999888 4444 67877 899999999999994 55
Q ss_pred HHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 279 LKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 279 L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
+.+.+.+..+.....-..+|+.. ...-+.+.+-.|++|.+-..++..+..
T Consensus 179 l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 179 ILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 66666655432223334555532 222234555566888875555555443
No 45
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.62 E-value=2.1e-15 Score=149.79 Aligned_cols=169 Identities=20% Similarity=0.255 Sum_probs=112.8
Q ss_pred cccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc------cCcceEE
Q 007480 51 ETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI------DGSRTSV 120 (602)
Q Consensus 51 ~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~------~~~~~~v 120 (602)
.+|+++++.+ ++++|+||||||||||+++|+|. .++++| |++.+.++.... .+..+++
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 84 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGI------------EKPTRGKIRFNGQDLTRLRGREIPFLRRHIGM 84 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEehhhcChhHHHHHHHhceE
Confidence 5899999888 89999999999999999999998 478999 999998764210 1346899
Q ss_pred EeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhh
Q 007480 121 FYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQR 200 (602)
Q Consensus 121 vl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvR 200 (602)
++++...+ +..++.|++.+++.. +......
T Consensus 85 ~~q~~~~~---~~~tv~e~l~~~~~~-------~~~~~~~---------------------------------------- 114 (216)
T TIGR00960 85 VFQDHRLL---SDRTVYDNVAFPLRI-------IGVPPRD---------------------------------------- 114 (216)
T ss_pred EecCcccc---ccccHHHHHHHHHHh-------cCCCHHH----------------------------------------
Confidence 99986433 356888988775422 1110000
Q ss_pred ccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHH
Q 007480 201 DFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQL 279 (602)
Q Consensus 201 Df~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L 279 (602)
..+.++++++.++. +..++.+.++|++++++..++ .+++ .+|.+ .+.|||++.||+... +.+
T Consensus 115 -------~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la---ral~-~~p~l---lllDEPt~~LD~~~~---~~l 177 (216)
T TIGR00960 115 -------ANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIA---RAIV-HKPPL---LLADEPTGNLDPELS---RDI 177 (216)
T ss_pred -------HHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCCCcCCHHHH---HHH
Confidence 11122223333222 111345678999999999888 4444 67877 899999999999994 455
Q ss_pred HHHHhhhcCCCccceEeecc
Q 007480 280 KKLVASVTRPKIVQGKFLNG 299 (602)
Q Consensus 280 ~~~I~~~~~pK~l~g~~ltG 299 (602)
.+.+.+..+. ...-..+++
T Consensus 178 ~~~l~~~~~~-~~tii~vsH 196 (216)
T TIGR00960 178 MRLFEEFNRR-GTTVLVATH 196 (216)
T ss_pred HHHHHHHHHC-CCEEEEEeC
Confidence 6666554322 222345555
No 46
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.62 E-value=2.3e-15 Score=157.66 Aligned_cols=198 Identities=18% Similarity=0.173 Sum_probs=128.1
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc--ccCcceEEEee
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME--IDGSRTSVFYL 123 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~--~~~~~~~vvl~ 123 (602)
..+|+++++.+ ++++|+|||||||||||++|+|+ .++++| |++.|.++... ..+..+++++|
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl------------~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q 84 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGM------------ISPDRGKITVLGEPVPSRARLARVAIGVVPQ 84 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEECcccHHHHhhcEEEEec
Confidence 45899999988 89999999999999999999998 478999 99999876421 12457899999
Q ss_pred ccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccC
Q 007480 124 DTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFL 203 (602)
Q Consensus 124 DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~ 203 (602)
+...+ +..|+.|++.+.... +........+.+
T Consensus 85 ~~~~~---~~~tv~e~l~~~~~~-------~~~~~~~~~~~~-------------------------------------- 116 (303)
T TIGR01288 85 FDNLD---PEFTVRENLLVFGRY-------FGMSTREIEAVI-------------------------------------- 116 (303)
T ss_pred cccCC---cCCcHHHHHHHHHHH-------cCCCHHHHHHHH--------------------------------------
Confidence 86433 356888887753221 211100001111
Q ss_pred CcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 007480 204 QGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 204 ~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~ 282 (602)
+..++..+. ...++.+.++|++++++..++ .++ +.+|.+ .++|||+++||+.. ++.+.+.
T Consensus 117 ---------~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la---~al-~~~p~l---llLDEPt~gLD~~~---~~~l~~~ 177 (303)
T TIGR01288 117 ---------PSLLEFARLESKADVRVALLSGGMKRRLTLA---RAL-INDPQL---LILDEPTTGLDPHA---RHLIWER 177 (303)
T ss_pred ---------HHHHHHCCChhHhcCchhhCCHHHHHHHHHH---HHH-hcCCCE---EEEeCCCcCCCHHH---HHHHHHH
Confidence 122222221 111456678999999999888 444 477877 89999999999999 4566666
Q ss_pred HhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 283 VASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 283 I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
+.+..+ +...-..+++. ....-+.+.+-.+++|.+-..++..+.
T Consensus 178 l~~~~~-~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 222 (303)
T TIGR01288 178 LRSLLA-RGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHAL 222 (303)
T ss_pred HHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 666533 22223344442 222234455556688887665554443
No 47
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.61 E-value=2e-15 Score=162.02 Aligned_cols=200 Identities=16% Similarity=0.189 Sum_probs=134.8
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc---c----Ccce
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI---D----GSRT 118 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~---~----~~~~ 118 (602)
..+|+++++.+ ++++|+|||||||||||++|+|+ .+++.| |++.|.++.... . +..+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl------------~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i 73 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRL------------IEPTAGQIFIDGENIMKQSPVELREVRRKKI 73 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCC------------CCCCceEEEECCEECCcCCHHHHHHHHhCcE
Confidence 34789999988 99999999999999999999999 589999 999998875321 1 4679
Q ss_pred EEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhh
Q 007480 119 SVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLI 198 (602)
Q Consensus 119 ~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~v 198 (602)
++++|+...+ +..|+.||+.|.+.. ++.......+.+
T Consensus 74 ~~v~Q~~~l~---~~~TV~eNi~~~~~~-------~~~~~~~~~~~~--------------------------------- 110 (363)
T TIGR01186 74 GMVFQQFALF---PHMTILQNTSLGPEL-------LGWPEQERKEKA--------------------------------- 110 (363)
T ss_pred EEEECCCcCC---CCCCHHHHHHHHHHH-------cCCCHHHHHHHH---------------------------------
Confidence 9999976433 467999999886543 111111111222
Q ss_pred hhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHH
Q 007480 199 QRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRRE 277 (602)
Q Consensus 199 vRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~ 277 (602)
.++|+.++. ...++.+.++|++++++..++ ++++ ..|.+ .|.|||++.|||...+
T Consensus 111 --------------~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lA---RAL~-~~p~i---LLlDEP~saLD~~~r~--- 166 (363)
T TIGR01186 111 --------------LELLKLVGLEEYEHRYPDELSGGMQQRVGLA---RALA-AEPDI---LLMDEAFSALDPLIRD--- 166 (363)
T ss_pred --------------HHHHHhcCCchhhhCChhhCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCcccCCHHHHH---
Confidence 223333222 112456778999999999888 5554 66766 7899999999999955
Q ss_pred HHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 278 QLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 278 ~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
++.+.+.++.+....+-..+|+.. .+..+.+.+-.+++|.+-..++..+..
T Consensus 167 ~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 167 SMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 455555444322223334566633 334445666677899886666655554
No 48
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=2.6e-15 Score=148.79 Aligned_cols=190 Identities=18% Similarity=0.262 Sum_probs=119.2
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-ccCcceEEEeec
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-IDGSRTSVFYLD 124 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-~~~~~~~vvl~D 124 (602)
..+|+++++.+ ++++|+||||||||||+++|+|. .+++.| |.+.+.++... .....+++++++
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 80 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGL------------ERPDSGEILIDGRDVTGVPPERRNIGMVFQD 80 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCCeEEEECCEEcCcCchhhccEEEEcCc
Confidence 45899999988 89999999999999999999998 478999 99988776421 123568999988
Q ss_pred cccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCC
Q 007480 125 TEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQ 204 (602)
Q Consensus 125 teG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~ 204 (602)
...+ +..++.|++.++... ++.......+
T Consensus 81 ~~~~---~~~tv~~~l~~~~~~-------~~~~~~~~~~----------------------------------------- 109 (213)
T cd03259 81 YALF---PHLTVAENIAFGLKL-------RGVPKAEIRA----------------------------------------- 109 (213)
T ss_pred hhhc---cCCcHHHHHHhHHHH-------cCCCHHHHHH-----------------------------------------
Confidence 6533 256888888765422 1111000111
Q ss_pred cccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHH
Q 007480 205 GKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLV 283 (602)
Q Consensus 205 g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I 283 (602)
.++++++..+. ...++.+.++|++++++..++ .+++ ..|.+ .+.|||+++||+... ..+.+.+
T Consensus 110 ------~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la---~al~-~~p~~---lllDEPt~~LD~~~~---~~l~~~l 173 (213)
T cd03259 110 ------RVRELLELVGLEGLLNRYPHELSGGQQQRVALA---RALA-REPSL---LLLDEPLSALDAKLR---EELREEL 173 (213)
T ss_pred ------HHHHHHHHcCChhhhhcChhhCCHHHHHHHHHH---HHHh-cCCCE---EEEcCCcccCCHHHH---HHHHHHH
Confidence 11222222221 111345678899999998888 4554 66777 789999999999984 4566666
Q ss_pred hhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCC
Q 007480 284 ASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEI 318 (602)
Q Consensus 284 ~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~v 318 (602)
.+..+.....-..+++.. +...+.+.+-.+.+|.+
T Consensus 174 ~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 174 KELQRELGITTIYVTHDQEEALALADRIAVMNEGRI 209 (213)
T ss_pred HHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 555321122223444432 22223334444455654
No 49
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=3.7e-15 Score=148.56 Aligned_cols=156 Identities=21% Similarity=0.272 Sum_probs=107.1
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeecc
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLDT 125 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~Dt 125 (602)
..+|+++++.+ ++++|+||||||||||++.|+|. .++++| |++.+.++.. ....+++++++.
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~~~~~--~~~~i~~v~q~~ 82 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL------------ERPTSGEVLVDGEPVTG--PGPDRGYVFQQD 82 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEECcc--ccCcEEEEeccc
Confidence 45899999888 89999999999999999999998 478999 9999877642 246789999886
Q ss_pred ccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCc
Q 007480 126 EGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQG 205 (602)
Q Consensus 126 eG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g 205 (602)
..+ +..++.|++.++... ++.......+
T Consensus 83 ~~~---~~~tv~e~l~~~~~~-------~~~~~~~~~~------------------------------------------ 110 (220)
T cd03293 83 ALL---PWLTVLDNVALGLEL-------QGVPKAEARE------------------------------------------ 110 (220)
T ss_pred ccc---cCCCHHHHHHHHHHH-------cCCCHHHHHH------------------------------------------
Confidence 533 356888888765432 1111000111
Q ss_pred ccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHh
Q 007480 206 KSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVA 284 (602)
Q Consensus 206 ~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~ 284 (602)
.++++++..+. ...++.+.++|+++++...++ .++. .+|.+ .+.|||+++||+... ..+.+.+.
T Consensus 111 -----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la---~al~-~~p~l---llLDEPt~~LD~~~~---~~~~~~l~ 175 (220)
T cd03293 111 -----RAEELLELVGLSGFENAYPHQLSGGMRQRVALA---RALA-VDPDV---LLLDEPFSALDALTR---EQLQEELL 175 (220)
T ss_pred -----HHHHHHHHcCChhhhhCCcccCCHHHHHHHHHH---HHHH-cCCCE---EEECCCCCCCCHHHH---HHHHHHHH
Confidence 12222222221 111345567899999998888 4444 67777 789999999999994 45555555
Q ss_pred hh
Q 007480 285 SV 286 (602)
Q Consensus 285 ~~ 286 (602)
+.
T Consensus 176 ~~ 177 (220)
T cd03293 176 DI 177 (220)
T ss_pred HH
Confidence 54
No 50
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=2.7e-15 Score=151.54 Aligned_cols=202 Identities=20% Similarity=0.265 Sum_probs=126.9
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-ccCcceEEEeec
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-IDGSRTSVFYLD 124 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-~~~~~~~vvl~D 124 (602)
..+|+++++.+ ++++|+||||||||||+++|+|. .+++.| |++.+.++... .....+++++++
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 82 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL------------ERPDSGTILFGGEDATDVPVQERNVGFVFQH 82 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEECCcCCccccceEEEecC
Confidence 45899999888 89999999999999999999998 478999 99999876421 123568999988
Q ss_pred cccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCC
Q 007480 125 TEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQ 204 (602)
Q Consensus 125 teG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~ 204 (602)
+.-+ +..++.|++.++... +......+.
T Consensus 83 ~~~~---~~~tv~e~l~~~~~~-------~~~~~~~~~------------------------------------------ 110 (239)
T cd03296 83 YALF---RHMTVFDNVAFGLRV-------KPRSERPPE------------------------------------------ 110 (239)
T ss_pred Cccc---CCCCHHHHHhhhhhh-------ccccccCCH------------------------------------------
Confidence 6433 356888988765422 110000000
Q ss_pred cccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHH
Q 007480 205 GKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLV 283 (602)
Q Consensus 205 g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I 283 (602)
....+.++.+++.++. ...++.+.++|++++++..++ .+++ ..|.+ .+.|||++.||+... ..+.+.+
T Consensus 111 -~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la---~al~-~~p~l---lllDEP~~~LD~~~~---~~l~~~l 179 (239)
T cd03296 111 -AEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALA---RALA-VEPKV---LLLDEPFGALDAKVR---KELRRWL 179 (239)
T ss_pred -HHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHH---HHHh-cCCCE---EEEcCCcccCCHHHH---HHHHHHH
Confidence 0011222333333322 111355678999999999888 4554 56776 789999999999994 4566666
Q ss_pred hhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHH
Q 007480 284 ASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVE 326 (602)
Q Consensus 284 ~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e 326 (602)
.+..+.....-..+++.. ...-+.+.+-.+++|.+-..++..+
T Consensus 180 ~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 223 (239)
T cd03296 180 RRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDE 223 (239)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHH
Confidence 555432122233444432 2222334455567887755554433
No 51
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.60 E-value=3.9e-15 Score=155.93 Aligned_cols=196 Identities=15% Similarity=0.193 Sum_probs=131.7
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc--ccCcceEEEee
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME--IDGSRTSVFYL 123 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~--~~~~~~~vvl~ 123 (602)
..+|+++++.+ ++++|+||||+||||||++|+|+ .+++.| |+++|.++... ..+..++++++
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl------------~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q 82 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY------------LPPDSGSVQVCGEDVLQNPKEVQRNIGYLPE 82 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEEcccChHHHHhceEEecC
Confidence 45899999988 89999999999999999999998 488999 99999876432 12456899988
Q ss_pred ccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccC
Q 007480 124 DTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFL 203 (602)
Q Consensus 124 DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~ 203 (602)
+...+ +..++.|++.+.... |+.....
T Consensus 83 ~~~l~---~~~tv~e~l~~~~~~-------~~~~~~~------------------------------------------- 109 (301)
T TIGR03522 83 HNPLY---LDMYVREYLQFIAGI-------YGMKGQL------------------------------------------- 109 (301)
T ss_pred CCCCC---CCCcHHHHHHHHHHH-------cCCCHHH-------------------------------------------
Confidence 86533 356888887764322 2211111
Q ss_pred CcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 007480 204 QGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 204 ~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~ 282 (602)
..+.++++|+.++. +..++.+..+|+++++...++ .+ .+..|.+ .+.|||+++||+.. ++.+.+.
T Consensus 110 ----~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la---~a-l~~~p~l---liLDEPt~gLD~~~---~~~l~~~ 175 (301)
T TIGR03522 110 ----LKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLA---QA-LIHDPKV---LILDEPTTGLDPNQ---LVEIRNV 175 (301)
T ss_pred ----HHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHH---HH-HhcCCCE---EEEcCCcccCCHHH---HHHHHHH
Confidence 11122333333322 112456778899999998888 34 4578888 89999999999999 4566666
Q ss_pred HhhhcCCCccceEeeccHHHH--HHHHHHHHHHcCCCCCCCcchHHH
Q 007480 283 VASVTRPKIVQGKFLNGNEFV--AFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 283 I~~~~~pK~l~g~~ltG~~l~--~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
+....+ . ....++.+.+. .-+.+.+-.|++|.+-..++..+.
T Consensus 176 l~~~~~--~-~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (301)
T TIGR03522 176 IKNIGK--D-KTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDEL 219 (301)
T ss_pred HHHhcC--C-CEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 666532 2 23444443332 334456666689988766665544
No 52
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=4.9e-15 Score=146.55 Aligned_cols=188 Identities=18% Similarity=0.267 Sum_probs=118.2
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeecc
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLDT 125 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~Dt 125 (602)
..+++++++.+ ++++|+|+|||||||||++|+|. .+++.| |++.+.++.. .....+++++++.
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~-~~~~~i~~~~q~~ 79 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI------------ILPDSGEVLFDGKPLDI-AARNRIGYLPEER 79 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCCchhH-HHHccEEEeccCC
Confidence 35889999888 89999999999999999999998 478999 9999877642 2235689999887
Q ss_pred ccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCc
Q 007480 126 EGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQG 205 (602)
Q Consensus 126 eG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g 205 (602)
..+ +..++.|++.+.... ++.....
T Consensus 80 ~~~---~~~tv~e~l~~~~~~-------~~~~~~~--------------------------------------------- 104 (210)
T cd03269 80 GLY---PKMKVIDQLVYLAQL-------KGLKKEE--------------------------------------------- 104 (210)
T ss_pred cCC---cCCcHHHHHHHHHHH-------cCCChHH---------------------------------------------
Confidence 433 245888887664321 1111000
Q ss_pred ccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHh
Q 007480 206 KSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVA 284 (602)
Q Consensus 206 ~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~ 284 (602)
..+.++++++..+. ...++.+.++|++++++..++ .+++ .+|.. .+.|||++.||+... +.+.+.+.
T Consensus 105 --~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la---~al~-~~p~~---lllDEP~~~LD~~~~---~~~~~~l~ 172 (210)
T cd03269 105 --ARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFI---AAVI-HDPEL---LILDEPFSGLDPVNV---ELLKDVIR 172 (210)
T ss_pred --HHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCCcCCCHHHH---HHHHHHHH
Confidence 01112222222221 111345678899999988887 4544 56766 789999999999994 45555565
Q ss_pred hhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCC
Q 007480 285 SVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEI 318 (602)
Q Consensus 285 ~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~v 318 (602)
+..+ +...-..+++.. ...-+.+.+-.+++|.+
T Consensus 173 ~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~g~i 206 (210)
T cd03269 173 ELAR-AGKTVILSTHQMELVEELCDRVLLLNKGRA 206 (210)
T ss_pred HHHH-CCCEEEEECCCHHHHHHhhhEEEEEeCCEE
Confidence 5432 222233444432 22223334444466654
No 53
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.60 E-value=5.2e-15 Score=147.25 Aligned_cols=192 Identities=15% Similarity=0.157 Sum_probs=121.6
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc--ccCcceEEEee
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME--IDGSRTSVFYL 123 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~--~~~~~~~vvl~ 123 (602)
..+|+++++.+ ++++|+||||||||||+++|+|. .+++.| |++.+.++... .....++++++
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q 82 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE------------LRPTSGTAYINGYSIRTDRKAARQSLGYCPQ 82 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEECCEecccchHHHhhhEEEecC
Confidence 45899999888 89999999999999999999998 478999 99998876421 12356889998
Q ss_pred ccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccC
Q 007480 124 DTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFL 203 (602)
Q Consensus 124 DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~ 203 (602)
+..-+ +..++.||+.+.... ++.......+.+.
T Consensus 83 ~~~~~---~~~tv~~~l~~~~~~-------~~~~~~~~~~~~~------------------------------------- 115 (220)
T cd03263 83 FDALF---DELTVREHLRFYARL-------KGLPKSEIKEEVE------------------------------------- 115 (220)
T ss_pred cCCcc---ccCCHHHHHHHHHHH-------cCCCHHHHHHHHH-------------------------------------
Confidence 86433 256888887764322 2111100111111
Q ss_pred CcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 007480 204 QGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 204 ~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~ 282 (602)
++++..+. ...++.+.++|+++++...++ .+++ ..|.+ .+.|||++.||+... +.+.+.
T Consensus 116 ----------~~l~~~~l~~~~~~~~~~LS~G~~qrv~la---~al~-~~p~l---lllDEP~~~LD~~~~---~~l~~~ 175 (220)
T cd03263 116 ----------LLLRVLGLTDKANKRARTLSGGMKRKLSLA---IALI-GGPSV---LLLDEPTSGLDPASR---RAIWDL 175 (220)
T ss_pred ----------HHHHHcCCHHHHhChhhhCCHHHHHHHHHH---HHHh-cCCCE---EEECCCCCCCCHHHH---HHHHHH
Confidence 12222111 011244567899999988887 4554 67777 789999999999994 455566
Q ss_pred HhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCc
Q 007480 283 VASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTG 322 (602)
Q Consensus 283 I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~ 322 (602)
+.+..+ ...-..+++. .....+.+.+-.+++|.+-..+
T Consensus 176 l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 214 (220)
T cd03263 176 ILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIG 214 (220)
T ss_pred HHHHhc--CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 655533 2223344442 2222234445555778764443
No 54
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.60 E-value=3.1e-15 Score=148.98 Aligned_cols=171 Identities=17% Similarity=0.172 Sum_probs=111.4
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc-------cCcce
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI-------DGSRT 118 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~-------~~~~~ 118 (602)
..+|+++++.+ ++++|+|||||||||||++|+|. .+++.| |++.+.++.... ....+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 85 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL------------DNPTSGEVLFNGQSLSKLSSNERAKLRNKKL 85 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEECCEEhhhcCHhHHHHHHHhcE
Confidence 45899999888 89999999999999999999998 478999 999988764211 01468
Q ss_pred EEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhh
Q 007480 119 SVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLI 198 (602)
Q Consensus 119 ~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~v 198 (602)
++++++...+ +..++.|++.+.... +........+.+
T Consensus 86 ~~v~q~~~~~---~~~tv~~~l~~~~~~-------~~~~~~~~~~~~--------------------------------- 122 (221)
T TIGR02211 86 GFIYQFHHLL---PDFTALENVAMPLLI-------GKKSVKEAKERA--------------------------------- 122 (221)
T ss_pred EEEecccccC---CCCcHHHHHHHHHHh-------cCCCHHHHHHHH---------------------------------
Confidence 9999986433 256888988764321 111000001111
Q ss_pred hhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHH
Q 007480 199 QRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRRE 277 (602)
Q Consensus 199 vRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~ 277 (602)
.++++..+. ...++.+.++|++++++..++ .+++ .+|.+ .+.|||++.||+... .
T Consensus 123 --------------~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la---ral~-~~p~i---lllDEPt~~LD~~~~---~ 178 (221)
T TIGR02211 123 --------------YEMLEKVGLEHRINHRPSELSGGERQRVAIA---RALV-NQPSL---VLADEPTGNLDNNNA---K 178 (221)
T ss_pred --------------HHHHHHcCChhhhhCChhhCCHHHHHHHHHH---HHHh-CCCCE---EEEeCCCCcCCHHHH---H
Confidence 122222211 111345678899999999888 4444 67777 799999999999994 4
Q ss_pred HHHHHHhhhcCCCccceEeecc
Q 007480 278 QLKKLVASVTRPKIVQGKFLNG 299 (602)
Q Consensus 278 ~L~~~I~~~~~pK~l~g~~ltG 299 (602)
.+.+.+.+..+.....-..+|+
T Consensus 179 ~l~~~l~~~~~~~~~tii~~tH 200 (221)
T TIGR02211 179 IIFDLMLELNRELNTSFLVVTH 200 (221)
T ss_pred HHHHHHHHHHHhcCCEEEEEeC
Confidence 5556665543322222345555
No 55
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.60 E-value=5.8e-15 Score=140.33 Aligned_cols=206 Identities=17% Similarity=0.250 Sum_probs=147.1
Q ss_pred EEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcc
Q 007480 33 IVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNP 108 (602)
Q Consensus 33 lv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~ 108 (602)
++..++.+..+.-....+.+|+++++.| +.|+||||+||||||||-.++|+ +.++.| |.+.|++
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGL------------d~~ssGeV~l~G~~ 73 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL------------DDPSSGEVRLLGQP 73 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcC------------CCCCCceEEEcCcc
Confidence 4555555555555566788999999988 99999999999999999999999 689999 9999998
Q ss_pred cCcc-------ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcc
Q 007480 109 VEME-------IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGR 181 (602)
Q Consensus 109 ~~~~-------~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~ 181 (602)
+... ..++.+++|||.... +|++|..+|+...+-. -+
T Consensus 74 L~~ldEd~rA~~R~~~vGfVFQSF~L---ip~ltAlENV~lPleL-------~g-------------------------- 117 (228)
T COG4181 74 LHKLDEDARAALRARHVGFVFQSFHL---IPNLTALENVALPLEL-------RG-------------------------- 117 (228)
T ss_pred hhhcCHHHHHHhhccceeEEEEeeec---cccchhhhhccchhhh-------cC--------------------------
Confidence 7641 136789999987654 4577888888776543 10
Q ss_pred cCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhccc
Q 007480 182 VKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKL 260 (602)
Q Consensus 182 ~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L 260 (602)
+ .. + .+.+.-...|+.++. ..-..++.+++++.+|+.+++ ++|. ++|.+ .+
T Consensus 118 ---e-~~-----------~------~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiA---RAfa-~~P~v---Lf 169 (228)
T COG4181 118 ---E-SS-----------A------DSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALA---RAFA-GRPDV---LF 169 (228)
T ss_pred ---C-cc-----------c------cHHHHHHHHHHHhCcccccccCccccCchHHHHHHHH---HHhc-CCCCE---Ee
Confidence 0 00 0 111222333444442 222456778999999999998 7776 89998 88
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeecc-HHHHHHHHHHHHHHcCCCC
Q 007480 261 CDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNG-NEFVAFMEQILEALNKGEI 318 (602)
Q Consensus 261 ~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG-~~l~~lv~~yv~aINsG~v 318 (602)
.|||+.+||.+. -+++.+++|.+.+....+-..+|+ +.++..+...+ .+.+|.+
T Consensus 170 ADEPTGNLD~~T---g~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~-r~~~G~l 224 (228)
T COG4181 170 ADEPTGNLDRAT---GDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQL-RLRSGRL 224 (228)
T ss_pred ccCCCCCcchhH---HHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhhee-eeeccee
Confidence 999999999998 567778889887776666567777 66666655433 3445554
No 56
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=4.2e-15 Score=149.31 Aligned_cols=195 Identities=19% Similarity=0.304 Sum_probs=125.0
Q ss_pred cccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc------cCcceEE
Q 007480 51 ETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI------DGSRTSV 120 (602)
Q Consensus 51 ~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~------~~~~~~v 120 (602)
.+|+++++.+ ++++|+||||||||||++.|+|. .+++.| |.+.+.++.... ....+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 86 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL------------ERPTSGSVLVDGTDLTLLSGKELRKARRRIGM 86 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCEEcccCCHHHHHHHHhheEE
Confidence 5899999888 89999999999999999999998 488999 999998764211 1356889
Q ss_pred EeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhh
Q 007480 121 FYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQR 200 (602)
Q Consensus 121 vl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvR 200 (602)
++++..-+ +..++.|++.+.... ++......
T Consensus 87 ~~q~~~~~---~~~t~~e~l~~~~~~-------~~~~~~~~--------------------------------------- 117 (233)
T cd03258 87 IFQHFNLL---SSRTVFENVALPLEI-------AGVPKAEI--------------------------------------- 117 (233)
T ss_pred EccCcccC---CCCcHHHHHHHHHHH-------cCCCHHHH---------------------------------------
Confidence 98886433 356888888765322 11100000
Q ss_pred ccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHH
Q 007480 201 DFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQL 279 (602)
Q Consensus 201 Df~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L 279 (602)
.+.++++++..+. ...++.+.++|+++++...++ .++. ..|.+ .+.|||+++||+.. ...+
T Consensus 118 --------~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la---~al~-~~p~l---llLDEP~~~LD~~~---~~~l 179 (233)
T cd03258 118 --------EERVLELLELVGLEDKADAYPAQLSGGQKQRVGIA---RALA-NNPKV---LLCDEATSALDPET---TQSI 179 (233)
T ss_pred --------HHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHH---HHHh-cCCCE---EEecCCCCcCCHHH---HHHH
Confidence 1112222222221 111345678899999998888 4554 67777 78999999999999 4566
Q ss_pred HHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcch
Q 007480 280 KKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSL 324 (602)
Q Consensus 280 ~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl 324 (602)
.+.+.+..+.....-..+++.. ...-+.+++-.+++|.+-..++.
T Consensus 180 ~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 225 (233)
T cd03258 180 LALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTV 225 (233)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 6666665432222334444432 22223345555688877544443
No 57
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.59 E-value=5.9e-15 Score=151.97 Aligned_cols=213 Identities=19% Similarity=0.172 Sum_probs=133.8
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGN 107 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~ 107 (602)
+++.+++.+.++ ....+|+++++.+ ++++|+||||||||||+++|+|. .+++.| |++.+.
T Consensus 6 ~~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~ 69 (269)
T PRK11831 6 NLVDMRGVSFTR----GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ------------IAPDHGEILFDGE 69 (269)
T ss_pred ceEEEeCeEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCE
Confidence 456666544333 2345899999988 89999999999999999999998 478999 999988
Q ss_pred ccCccc------cCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcc-cchhhhHHHHHHHHHHHhhhhhhhc
Q 007480 108 PVEMEI------DGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYN-LPETIREADISRLSFAVELAEEFYG 180 (602)
Q Consensus 108 ~~~~~~------~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN-~~~~i~e~~l~~L~~~~~L~~~i~~ 180 (602)
++.... ....+++++++...+ +..++.||+.+.+.. ++ ......++.
T Consensus 70 ~i~~~~~~~~~~~~~~i~~v~q~~~~~---~~~tv~enl~~~~~~-------~~~~~~~~~~~~---------------- 123 (269)
T PRK11831 70 NIPAMSRSRLYTVRKRMSMLFQSGALF---TDMNVFDNVAYPLRE-------HTQLPAPLLHST---------------- 123 (269)
T ss_pred EccccChhhHHHHhhcEEEEecccccC---CCCCHHHHHHHHHHH-------ccCCCHHHHHHH----------------
Confidence 764210 134688999886433 356888888765422 11 000000111
Q ss_pred ccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcc
Q 007480 181 RVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTK 259 (602)
Q Consensus 181 ~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~ 259 (602)
+...|+.++. ...++.+.++|+++++...++ .++ +..|.+ .
T Consensus 124 -------------------------------~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~la---ral-~~~p~l---l 165 (269)
T PRK11831 124 -------------------------------VMMKLEAVGLRGAAKLMPSELSGGMARRAALA---RAI-ALEPDL---I 165 (269)
T ss_pred -------------------------------HHHHHHHcCChhhhhCChhhCCHHHHHHHHHH---HHH-hcCCCE---E
Confidence 1222222221 111345678999999998888 444 467777 8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 260 LCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 260 L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
+.|||+++||+... ..+.+.+.+..+.....-..+++. .....+.+.+-.+++|.+-..++..+.
T Consensus 166 lLDEPt~~LD~~~~---~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 166 MFDEPFVGQDPITM---GVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred EEcCCCccCCHHHH---HHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 89999999999994 456666665543222233445553 223334455556688887555554444
No 58
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.59 E-value=6e-15 Score=146.11 Aligned_cols=190 Identities=17% Similarity=0.273 Sum_probs=118.6
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-ccCcceEEEeec
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-IDGSRTSVFYLD 124 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-~~~~~~~vvl~D 124 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|. .+++.| |++.+.++... .....+++++++
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~------------~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~ 80 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL------------EEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN 80 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEECCcCCcccceEEEEecC
Confidence 45899999888 89999999999999999999998 478999 99999876421 123468899888
Q ss_pred cccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCC
Q 007480 125 TEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQ 204 (602)
Q Consensus 125 teG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~ 204 (602)
...+ +..++.||+.+.... ++.....
T Consensus 81 ~~~~---~~~tv~~~l~~~~~~-------~~~~~~~-------------------------------------------- 106 (213)
T cd03301 81 YALY---PHMTVYDNIAFGLKL-------RKVPKDE-------------------------------------------- 106 (213)
T ss_pred hhhc---cCCCHHHHHHHHHHh-------cCCCHHH--------------------------------------------
Confidence 6433 256888887764321 1110000
Q ss_pred cccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHH
Q 007480 205 GKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLV 283 (602)
Q Consensus 205 g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I 283 (602)
..+.++++++..+. ...++.+.++|+++++...++ .++. ..|.+ .+.|||++.||+... ..+.+.+
T Consensus 107 ---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la---ral~-~~p~l---lllDEPt~~LD~~~~---~~l~~~l 173 (213)
T cd03301 107 ---IDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALG---RAIV-REPKV---FLMDEPLSNLDAKLR---VQMRAEL 173 (213)
T ss_pred ---HHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHH---HHHh-cCCCE---EEEcCCcccCCHHHH---HHHHHHH
Confidence 11112222222221 111345678899999988887 4554 56777 789999999999994 4555556
Q ss_pred hhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCC
Q 007480 284 ASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEI 318 (602)
Q Consensus 284 ~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~v 318 (602)
.+..+.....-..+++.. ....+.+.+-.+++|.+
T Consensus 174 ~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~ 209 (213)
T cd03301 174 KRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209 (213)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 554322222334455432 22222233334455544
No 59
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.59 E-value=3.7e-15 Score=161.85 Aligned_cols=225 Identities=16% Similarity=0.147 Sum_probs=147.8
Q ss_pred EEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcc
Q 007480 33 IVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNP 108 (602)
Q Consensus 33 lv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~ 108 (602)
++..++.+. .+ ....+|+++++.+ ++++|+|||||||||||++|+|+ .++++| |.+.|.+
T Consensus 3 ~L~~~nls~--~y--~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGl------------l~p~sG~I~l~G~~ 66 (402)
T PRK09536 3 MIDVSDLSV--EF--GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGT------------LTPTAGTVLVAGDD 66 (402)
T ss_pred eEEEeeEEE--EE--CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC------------CCCCCcEEEECCEE
Confidence 455554332 22 3456899999988 89999999999999999999998 488999 9999987
Q ss_pred cCcc---ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCc
Q 007480 109 VEME---IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQ 185 (602)
Q Consensus 109 ~~~~---~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e 185 (602)
+... ...+.++++++++..+. ..++.|++.++... |.
T Consensus 67 i~~~~~~~~~~~ig~v~q~~~l~~---~~tv~e~v~~~~~~-------~~------------------------------ 106 (402)
T PRK09536 67 VEALSARAASRRVASVPQDTSLSF---EFDVRQVVEMGRTP-------HR------------------------------ 106 (402)
T ss_pred cCcCCHHHHhcceEEEccCCCCCC---CCCHHHHHHhccch-------hc------------------------------
Confidence 6431 12457899999875433 46888887764311 00
Q ss_pred ccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCC
Q 007480 186 DVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMK 264 (602)
Q Consensus 186 ~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p 264 (602)
..+ .+ .+....+.++++|+.++. ...++.+.++|++++++..++ +++ +..|.+ .++|||
T Consensus 107 --------~~~---~~--~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IA---rAL-~~~P~i---LLLDEP 166 (402)
T PRK09536 107 --------SRF---DT--WTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLA---RAL-AQATPV---LLLDEP 166 (402)
T ss_pred --------ccc---cC--CCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH---HHH-HcCCCE---EEEECC
Confidence 000 00 011223445666666554 223567889999999999988 444 478887 899999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhcCCCccceEeecc-HHHHHHHHHHHHHHcCCCCCCCcchHHHHhHHHHHHHH
Q 007480 265 DEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNG-NEFVAFMEQILEALNKGEIPSTGSLVEVFNKGILERCL 337 (602)
Q Consensus 265 ~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG-~~l~~lv~~yv~aINsG~vP~~~sl~e~~n~~av~~a~ 337 (602)
++.||+... .++.+.+.++.+ +...-..+++ ..++..+.+.+-.|++|.+-..++..+..+...+++.+
T Consensus 167 tsgLD~~~~---~~l~~lL~~l~~-~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~~~l~~~~ 236 (402)
T PRK09536 167 TASLDINHQ---VRTLELVRRLVD-DGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRAAF 236 (402)
T ss_pred cccCCHHHH---HHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCcHHHHHHh
Confidence 999999984 466666666643 2222233333 23333344555566899887777777766554444443
No 60
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.59 E-value=2.9e-15 Score=147.77 Aligned_cols=156 Identities=15% Similarity=0.195 Sum_probs=106.6
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeecc
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLDT 125 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~Dt 125 (602)
..+|+++++.+ ++++|+|||||||||||++|+|. .++++| |++.+.++........++++++++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGL------------IKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 45899999888 89999999999999999999998 488999 999988764222235689999986
Q ss_pred ccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCc
Q 007480 126 EGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQG 205 (602)
Q Consensus 126 eG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g 205 (602)
.... ...++.||+.+.... +. ..++.+.+
T Consensus 81 ~~~~--~~~tv~e~l~~~~~~-------~~----~~~~~~~~-------------------------------------- 109 (205)
T cd03226 81 DYQL--FTDSVREELLLGLKE-------LD----AGNEQAET-------------------------------------- 109 (205)
T ss_pred hhhh--hhccHHHHHhhhhhh-------cC----ccHHHHHH--------------------------------------
Confidence 4211 134788887654321 00 00111222
Q ss_pred ccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHh
Q 007480 206 KSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVA 284 (602)
Q Consensus 206 ~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~ 284 (602)
+++.++. +..++.+.++|++++++..++ .+++ .+|.+ .+.|||+++||+... +.+.+.+.
T Consensus 110 ---------~l~~~~l~~~~~~~~~~LS~G~~qrv~la---ral~-~~p~l---lllDEPt~~LD~~~~---~~l~~~l~ 170 (205)
T cd03226 110 ---------VLKDLDLYALKERHPLSLSGGQKQRLAIA---AALL-SGKDL---LIFDEPTSGLDYKNM---ERVGELIR 170 (205)
T ss_pred ---------HHHHcCCchhcCCCchhCCHHHHHHHHHH---HHHH-hCCCE---EEEeCCCccCCHHHH---HHHHHHHH
Confidence 2222221 111345678899999998887 4444 67877 899999999999994 55666666
Q ss_pred hhc
Q 007480 285 SVT 287 (602)
Q Consensus 285 ~~~ 287 (602)
+..
T Consensus 171 ~~~ 173 (205)
T cd03226 171 ELA 173 (205)
T ss_pred HHH
Confidence 553
No 61
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.59 E-value=5.3e-15 Score=148.12 Aligned_cols=175 Identities=18% Similarity=0.193 Sum_probs=113.5
Q ss_pred cEEeeCCCcceEEeccc--cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEc
Q 007480 32 PIVEPDPGHTKLRLSRE--GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVW 105 (602)
Q Consensus 32 plv~~d~~~~~l~~~~e--al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~ 105 (602)
+++.+++.+ +.+... ...+|+++++.+ ++++|+||||||||||+++|+|. .+++.| |++.
T Consensus 5 ~~l~~~~l~--~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl------------~~p~~G~i~~~ 70 (228)
T PRK10584 5 NIVEVHHLK--KSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGL------------DDGSSGEVSLV 70 (228)
T ss_pred ceEEEeeeE--EEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcC------------CCCCCeeEEEC
Confidence 356665543 233221 135899999988 89999999999999999999998 488999 9999
Q ss_pred CcccCccc-------cCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhh
Q 007480 106 GNPVEMEI-------DGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEF 178 (602)
Q Consensus 106 ~~~~~~~~-------~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i 178 (602)
|.++.... ....+++++++...+ +..++.||+.+.... ++......++
T Consensus 71 g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~---~~~tv~~~l~~~~~~-------~~~~~~~~~~--------------- 125 (228)
T PRK10584 71 GQPLHQMDEEARAKLRAKHVGFVFQSFMLI---PTLNALENVELPALL-------RGESSRQSRN--------------- 125 (228)
T ss_pred CEEcccCCHHHHHHHHhheEEEEEcccccC---CCcCHHHHHHHHHHh-------cCCCHHHHHH---------------
Confidence 88764211 124688998876433 245788887764321 1111111111
Q ss_pred hcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchh
Q 007480 179 YGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLR 257 (602)
Q Consensus 179 ~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~ 257 (602)
.++++++..+. ...++.+.++|++++++..++ .+++ ..|.+
T Consensus 126 --------------------------------~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la---~al~-~~p~l-- 167 (228)
T PRK10584 126 --------------------------------GAKALLEQLGLGKRLDHLPAQLSGGEQQRVALA---RAFN-GRPDV-- 167 (228)
T ss_pred --------------------------------HHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHH---HHHh-cCCCE--
Confidence 12222222221 111345667899999998888 4554 56777
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 007480 258 TKLCDMKDEELDPIYVKRREQLKKLVASVT 287 (602)
Q Consensus 258 ~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~ 287 (602)
.+.|||+++||+.. .+.+.+.+.+..
T Consensus 168 -lllDEPt~~LD~~~---~~~l~~~l~~~~ 193 (228)
T PRK10584 168 -LFADEPTGNLDRQT---GDKIADLLFSLN 193 (228)
T ss_pred -EEEeCCCCCCCHHH---HHHHHHHHHHHH
Confidence 78999999999999 456666666553
No 62
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.59 E-value=6.1e-15 Score=146.57 Aligned_cols=189 Identities=16% Similarity=0.154 Sum_probs=119.4
Q ss_pred cccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc--ccCcceEEEeec
Q 007480 51 ETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME--IDGSRTSVFYLD 124 (602)
Q Consensus 51 ~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~--~~~~~~~vvl~D 124 (602)
.+|+++++.+ ++++|+|+||||||||++.|+|. .++++| |++.+.++... ..+..+++++++
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 86 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL------------LEPDAGFATVDGFDVVKEPAEARRRLGFVSDS 86 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------cCCCCceEEECCEEcccCHHHHHhhEEEecCC
Confidence 5899999888 89999999999999999999998 488999 99999876431 123568999998
Q ss_pred cccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCC
Q 007480 125 TEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQ 204 (602)
Q Consensus 125 teG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~ 204 (602)
..-+ +..++.|++.+.... ++.......+.+.++...+++.
T Consensus 87 ~~~~---~~~tv~e~l~~~~~~-------~~~~~~~~~~~~~~~l~~~~l~----------------------------- 127 (218)
T cd03266 87 TGLY---DRLTARENLEYFAGL-------YGLKGDELTARLEELADRLGME----------------------------- 127 (218)
T ss_pred cccC---cCCCHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHcCCH-----------------------------
Confidence 7433 245888887764322 2111111111122222211111
Q ss_pred cccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHh
Q 007480 205 GKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVA 284 (602)
Q Consensus 205 g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~ 284 (602)
...++.+.++|++++++..++ .+++ ..|.+ .+.|||++.||+.. .+.+.+.+.
T Consensus 128 -----------------~~~~~~~~~LS~G~~qrv~la---ral~-~~p~i---lllDEPt~~LD~~~---~~~l~~~l~ 180 (218)
T cd03266 128 -----------------ELLDRRVGGFSTGMRQKVAIA---RALV-HDPPV---LLLDEPTTGLDVMA---TRALREFIR 180 (218)
T ss_pred -----------------HHHhhhhhhcCHHHHHHHHHH---HHHh-cCCCE---EEEcCCCcCCCHHH---HHHHHHHHH
Confidence 001345667899999988888 4554 66777 78999999999999 456666666
Q ss_pred hhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCC
Q 007480 285 SVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEI 318 (602)
Q Consensus 285 ~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~v 318 (602)
+..+ +...-..+++.. ....+.+.+-.+++|++
T Consensus 181 ~~~~-~~~tii~~tH~~~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 181 QLRA-LGKCILFSTHIMQEVERLCDRVVVLHRGRV 214 (218)
T ss_pred HHHH-CCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 5532 222334555532 22222333444566654
No 63
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.58 E-value=8e-15 Score=145.31 Aligned_cols=159 Identities=23% Similarity=0.292 Sum_probs=107.9
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc------ccCcceE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME------IDGSRTS 119 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~------~~~~~~~ 119 (602)
..+|+++++.+ ++++|+||||||||||++.|+|. .++++| |++.+.++... .....++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl------------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 82 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA------------LTPSRGQVRIAGEDVNRLRGRQLPLLRRRIG 82 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCEEcccCCHHHHHHHHhheE
Confidence 45899999988 89999999999999999999998 478999 99998876421 1235689
Q ss_pred EEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhh
Q 007480 120 VFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQ 199 (602)
Q Consensus 120 vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vv 199 (602)
+++++...+ +..++.|++.++... ++......
T Consensus 83 ~~~q~~~~~---~~~tv~~~l~~~~~~-------~~~~~~~~-------------------------------------- 114 (214)
T TIGR02673 83 VVFQDFRLL---PDRTVYENVALPLEV-------RGKKEREI-------------------------------------- 114 (214)
T ss_pred EEecChhhc---cCCcHHHHHHHHHHH-------cCCCHHHH--------------------------------------
Confidence 999886543 246888888765422 11100001
Q ss_pred hccCCcccHHHHHHHHHHhCCCC-CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHH
Q 007480 200 RDFLQGKSVQEMVHDALQRVPND-KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQ 278 (602)
Q Consensus 200 RDf~~g~t~~eyLe~aL~~~~~~-~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~ 278 (602)
.+.++++++..+.. ..++.+.++|+++++...++ .++. ..|.+ .+.|||+++||+... ..
T Consensus 115 ---------~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la---~al~-~~p~l---llLDEPt~~LD~~~~---~~ 175 (214)
T TIGR02673 115 ---------QRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIA---RAIV-NSPPL---LLADEPTGNLDPDLS---ER 175 (214)
T ss_pred ---------HHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH---HHHh-CCCCE---EEEeCCcccCCHHHH---HH
Confidence 11222222222211 11345668899999998888 4444 66776 789999999999994 56
Q ss_pred HHHHHhhhc
Q 007480 279 LKKLVASVT 287 (602)
Q Consensus 279 L~~~I~~~~ 287 (602)
+.+.+.+..
T Consensus 176 l~~~l~~~~ 184 (214)
T TIGR02673 176 ILDLLKRLN 184 (214)
T ss_pred HHHHHHHHH
Confidence 666666543
No 64
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.58 E-value=5.6e-15 Score=148.55 Aligned_cols=205 Identities=17% Similarity=0.231 Sum_probs=128.1
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc----cCcceEEE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI----DGSRTSVF 121 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~----~~~~~~vv 121 (602)
..+|+++++.+ ++++|+|||||||||||++|+|. .++++| |++.+.++.... .+..++++
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF------------LRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCC------------CCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 35899999888 89999999999999999999998 478999 999998764311 12458899
Q ss_pred eeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhc
Q 007480 122 YLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRD 201 (602)
Q Consensus 122 l~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRD 201 (602)
+++..-+ +..|+.|++.+.... +... ... ..+ .+
T Consensus 81 ~q~~~l~---~~~tv~~~l~~~~~~-------~~~~-~~~--------------------------------~~~---~~ 114 (236)
T cd03219 81 FQIPRLF---PELTVLENVMVAAQA-------RTGS-GLL--------------------------------LAR---AR 114 (236)
T ss_pred ecccccc---cCCCHHHHHHHHHhh-------cccc-ccc--------------------------------ccc---cc
Confidence 9886533 356888888765422 0000 000 000 00
Q ss_pred cCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHH
Q 007480 202 FLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLK 280 (602)
Q Consensus 202 f~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~ 280 (602)
. ......+.++++++..+. ...++.+.++|+++++...++ .+++ .+|.+ .+.|||+++||+.. ...+.
T Consensus 115 ~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la---~al~-~~p~l---lllDEPt~~LD~~~---~~~l~ 183 (236)
T cd03219 115 R-EEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIA---RALA-TDPKL---LLLDEPAAGLNPEE---TEELA 183 (236)
T ss_pred c-cHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHH---HHHh-cCCCE---EEEcCCcccCCHHH---HHHHH
Confidence 0 000112234444444433 122466788999999999888 4554 66777 78999999999999 45666
Q ss_pred HHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcch
Q 007480 281 KLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSL 324 (602)
Q Consensus 281 ~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl 324 (602)
+.+.+..+ +...-..+++. .....+.+.+-.+++|.+-..++.
T Consensus 184 ~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 227 (236)
T cd03219 184 ELIRELRE-RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTP 227 (236)
T ss_pred HHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCH
Confidence 66665543 22222344442 222233445555678877544443
No 65
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.58 E-value=9.6e-15 Score=147.21 Aligned_cols=198 Identities=20% Similarity=0.235 Sum_probs=123.9
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc--ccCcceEEEee
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME--IDGSRTSVFYL 123 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~--~~~~~~~vvl~ 123 (602)
..+|+++++.+ ++++|+||||||||||+++|+|. .++++| |++.+.++... .....++++++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q 81 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRL------------YVAQEGQISVAGHDLRRAPRAALARLGVVFQ 81 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------cCCCceEEEECCEEcccCChhhhhhEEEeCC
Confidence 45899999888 89999999999999999999998 488999 99988765421 11246889988
Q ss_pred ccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccC
Q 007480 124 DTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFL 203 (602)
Q Consensus 124 DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~ 203 (602)
+...+ +..++.|++.+.... ++.....
T Consensus 82 ~~~~~---~~~t~~~~l~~~~~~-------~~~~~~~------------------------------------------- 108 (236)
T TIGR03864 82 QPTLD---LDLSVRQNLRYHAAL-------HGLSRAE------------------------------------------- 108 (236)
T ss_pred CCCCc---ccCcHHHHHHHHHHh-------cCCCHHH-------------------------------------------
Confidence 76433 246788887653321 1110000
Q ss_pred CcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 007480 204 QGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 204 ~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~ 282 (602)
..+.+++.++.++. ...++.+.++|+++++...++ .++ +.+|.+ .+.|||+++||+... +.+.+.
T Consensus 109 ----~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la---ral-~~~p~l---lllDEP~~~LD~~~~---~~l~~~ 174 (236)
T TIGR03864 109 ----ARERIAALLARLGLAERADDKVRELNGGHRRRVEIA---RAL-LHRPAL---LLLDEPTVGLDPASR---AAIVAH 174 (236)
T ss_pred ----HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHH---HHH-hcCCCE---EEEcCCccCCCHHHH---HHHHHH
Confidence 01111222222221 111355678999999998888 444 467777 789999999999994 456666
Q ss_pred HhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 283 VASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 283 I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
+.+..+.+...-..+++.. .... .+.+-.+++|.+-..++..+.
T Consensus 175 l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 219 (236)
T TIGR03864 175 VRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAEL 219 (236)
T ss_pred HHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHH
Confidence 6555432222233444422 2222 444445578877555554433
No 66
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=6.6e-15 Score=151.66 Aligned_cols=200 Identities=17% Similarity=0.201 Sum_probs=127.1
Q ss_pred cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc-------cCcc
Q 007480 49 GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI-------DGSR 117 (602)
Q Consensus 49 al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~-------~~~~ 117 (602)
...+|+++++.+ ++++|+||||||||||+++|+|. .+++.| |++.|.++.... ....
T Consensus 36 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl------------~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRL------------IEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 445799999888 89999999999999999999998 478999 999998764211 1246
Q ss_pred eEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhh
Q 007480 118 TSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWL 197 (602)
Q Consensus 118 ~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~ 197 (602)
+++++++..-+ +..++.|++.+.+.. .+.......+
T Consensus 104 i~~v~q~~~~~---~~~tv~e~l~~~~~~-------~~~~~~~~~~---------------------------------- 139 (269)
T cd03294 104 ISMVFQSFALL---PHRTVLENVAFGLEV-------QGVPRAEREE---------------------------------- 139 (269)
T ss_pred EEEEecCcccC---CCCcHHHHHHHHHHh-------cCCCHHHHHH----------------------------------
Confidence 89999886433 356888888765422 1110000111
Q ss_pred hhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHH
Q 007480 198 IQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRR 276 (602)
Q Consensus 198 vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~ 276 (602)
.++++++.++. ...++.+.++|++++++..++ .++ +..|.+ .+.|||+++||+...
T Consensus 140 -------------~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lA---ral-~~~p~i---llLDEPt~~LD~~~~--- 196 (269)
T cd03294 140 -------------RAAEALELVGLEGWEHKYPDELSGGMQQRVGLA---RAL-AVDPDI---LLMDEAFSALDPLIR--- 196 (269)
T ss_pred -------------HHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHH---HHH-hcCCCE---EEEcCCCccCCHHHH---
Confidence 12222222221 111345668899999999888 444 477877 899999999999994
Q ss_pred HHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 277 EQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 277 ~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
..+.+.+.+..+.+...-..+++.. ....+.+.+-.+++|.+-..++..+.
T Consensus 197 ~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 248 (269)
T cd03294 197 REMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEI 248 (269)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 4566666555432222223444432 22334455556688887555555444
No 67
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.58 E-value=1.5e-14 Score=144.02 Aligned_cols=194 Identities=15% Similarity=0.201 Sum_probs=121.7
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc----cCcceEEE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI----DGSRTSVF 121 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~----~~~~~~vv 121 (602)
..+|+++++.+ ++++|+||||||||||+++|+|. .++++| |++.+.++.... .+..++++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL------------LPPRSGSIRFDGRDITGLPPHERARAGIGYV 80 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCEEcCCCCHHHHHhcCeEEe
Confidence 35899999888 89999999999999999999998 488999 999997764211 13468999
Q ss_pred eeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhc
Q 007480 122 YLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRD 201 (602)
Q Consensus 122 l~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRD 201 (602)
+++..-+ +..++.||+.+.... +. .......+..+...++
T Consensus 81 ~q~~~~~---~~~t~~~~l~~~~~~-------~~--~~~~~~~~~~~l~~~~---------------------------- 120 (222)
T cd03224 81 PEGRRIF---PELTVEENLLLGAYA-------RR--RAKRKARLERVYELFP---------------------------- 120 (222)
T ss_pred ccccccC---CCCcHHHHHHHHhhh-------cC--chhHHHHHHHHHHHHH----------------------------
Confidence 9886433 356888888765422 11 0000111111111000
Q ss_pred cCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHH
Q 007480 202 FLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKK 281 (602)
Q Consensus 202 f~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~ 281 (602)
+ ++. ..++.+.++|++++++..++ .+++ .+|.+ .+.|||+++||+.. .+.+.+
T Consensus 121 ---~------l~~--------~~~~~~~~LS~G~~qrv~la---ral~-~~p~l---lllDEPt~~LD~~~---~~~l~~ 173 (222)
T cd03224 121 ---R------LKE--------RRKQLAGTLSGGEQQMLAIA---RALM-SRPKL---LLLDEPSEGLAPKI---VEEIFE 173 (222)
T ss_pred ---h------hhh--------hhhCchhhCCHHHHHHHHHH---HHHh-cCCCE---EEECCCcccCCHHH---HHHHHH
Confidence 0 000 01345678899999988887 4544 66777 78999999999999 456666
Q ss_pred HHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcc
Q 007480 282 LVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGS 323 (602)
Q Consensus 282 ~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~s 323 (602)
.+.+..+ ....-..+++. ....-+.+.+-.+++|.+-..++
T Consensus 174 ~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 215 (222)
T cd03224 174 AIRELRD-EGVTILLVEQNARFALEIADRAYVLERGRVVLEGT 215 (222)
T ss_pred HHHHHHH-CCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCC
Confidence 6665533 22222344442 22233344555557787754443
No 68
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.58 E-value=7.9e-15 Score=144.82 Aligned_cols=186 Identities=16% Similarity=0.183 Sum_probs=119.9
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-ccCcceEEEeec
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-IDGSRTSVFYLD 124 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-~~~~~~~vvl~D 124 (602)
..+|+++++.+ ++++|+||||||||||++.|+|. .++++| |++.+.++... .....++++++|
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGL------------IKPDSGEITFDGKSYQKNIEALRRIGALIEA 80 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------cCCCceEEEECCCcccchHHHHhhEEEecCC
Confidence 45899999888 99999999999999999999998 478999 99999876421 123568899888
Q ss_pred cccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCC
Q 007480 125 TEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQ 204 (602)
Q Consensus 125 teG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~ 204 (602)
...+ +..++.|++.+.... +. .+++.++.+...+++.+.
T Consensus 81 ~~~~---~~~tv~e~l~~~~~~-------~~----~~~~~~~~~l~~~~l~~~--------------------------- 119 (208)
T cd03268 81 PGFY---PNLTARENLRLLARL-------LG----IRKKRIDEVLDVVGLKDS--------------------------- 119 (208)
T ss_pred CccC---ccCcHHHHHHHHHHh-------cC----CcHHHHHHHHHHcCCHHH---------------------------
Confidence 6543 356888988765422 11 112223332222222110
Q ss_pred cccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHh
Q 007480 205 GKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVA 284 (602)
Q Consensus 205 g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~ 284 (602)
.++.+.++|++++++..++ .+++ .+|.+ .+.|||+++||+... +.+.+.+.
T Consensus 120 -------------------~~~~~~~LS~G~~qrv~la---~al~-~~p~l---lllDEPt~~LD~~~~---~~l~~~l~ 170 (208)
T cd03268 120 -------------------AKKKVKGFSLGMKQRLGIA---LALL-GNPDL---LILDEPTNGLDPDGI---KELRELIL 170 (208)
T ss_pred -------------------HhhhHhhCCHHHHHHHHHH---HHHh-cCCCE---EEECCCcccCCHHHH---HHHHHHHH
Confidence 0234567889999888887 4444 56766 789999999999994 56666666
Q ss_pred hhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCC
Q 007480 285 SVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEI 318 (602)
Q Consensus 285 ~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~v 318 (602)
+..+ ....-..+|+. .+...+.+.+-.+++|.+
T Consensus 171 ~~~~-~~~tii~~tH~~~~~~~~~d~v~~l~~g~i 204 (208)
T cd03268 171 SLRD-QGITVLISSHLLSEIQKVADRIGIINKGKL 204 (208)
T ss_pred HHHH-CCCEEEEEcCCHHHHHHhcCEEEEEECCEE
Confidence 5543 22223345542 222223344445566654
No 69
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.57 E-value=6.1e-15 Score=146.39 Aligned_cols=213 Identities=16% Similarity=0.231 Sum_probs=142.3
Q ss_pred EEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc----c
Q 007480 43 LRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI----D 114 (602)
Q Consensus 43 l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~----~ 114 (602)
+.......++|+++++.+ ++++++|+||+||||||+.|+|. .++++| |.+.|+++...+ .
T Consensus 9 l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl------------~~~~~G~I~~~G~dit~~p~~~r~ 76 (237)
T COG0410 9 LSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGL------------VRPRSGRIIFDGEDITGLPPHERA 76 (237)
T ss_pred EeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCeeEEECCeecCCCCHHHHH
Confidence 455567789999999999 99999999999999999999998 477899 999999887532 3
Q ss_pred CcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccch-hhhHHHHHHHHHHHhhhhhhhcccCCcccccCccc
Q 007480 115 GSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPE-TIREADISRLSFAVELAEEFYGRVKGQDVAFEPAK 193 (602)
Q Consensus 115 ~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~-~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~ 193 (602)
+..+++|. ||-.-++.+||+||+..+... ... ...+..+ ..+.+ .||.
T Consensus 77 r~Gi~~VP---egR~iF~~LTVeENL~~g~~~---------~~~~~~~~~~~---e~v~~---------------lFP~- 125 (237)
T COG0410 77 RLGIAYVP---EGRRIFPRLTVEENLLLGAYA---------RRDKEAQERDL---EEVYE---------------LFPR- 125 (237)
T ss_pred hCCeEeCc---ccccchhhCcHHHHHhhhhhc---------ccccccccccH---HHHHH---------------HChh-
Confidence 45677775 444445688999999987643 111 0000001 11111 1331
Q ss_pred chhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHH
Q 007480 194 LVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYV 273 (602)
Q Consensus 194 flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~ 273 (602)
|.+.. ++....+|++++|..+++ +++ +.+|.+ .|.|||+.+|.|..+
T Consensus 126 ------------------Lker~--------~~~aG~LSGGEQQMLAia---RAL-m~~Pkl---LLLDEPs~GLaP~iv 172 (237)
T COG0410 126 ------------------LKERR--------NQRAGTLSGGEQQMLAIA---RAL-MSRPKL---LLLDEPSEGLAPKIV 172 (237)
T ss_pred ------------------HHHHh--------cCcccCCChHHHHHHHHH---HHH-hcCCCE---EEecCCccCcCHHHH
Confidence 11122 244567899999999998 444 589998 899999999999996
Q ss_pred HHHHHHHHHHhhhcCCCccceEeecc-HHHHHHHHHHHHHHcCCCCCCCcchHHHHhHHHHH
Q 007480 274 KRREQLKKLVASVTRPKIVQGKFLNG-NEFVAFMEQILEALNKGEIPSTGSLVEVFNKGILE 334 (602)
Q Consensus 274 e~~~~L~~~I~~~~~pK~l~g~~ltG-~~l~~lv~~yv~aINsG~vP~~~sl~e~~n~~av~ 334 (602)
+ ++-+.|.++.+...+.-..+.- ..++--+.++...+.+|.+--.++..+..++..+.
T Consensus 173 ~---~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~v~ 231 (237)
T COG0410 173 E---EIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDVR 231 (237)
T ss_pred H---HHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHHHH
Confidence 5 4445555543332323222222 33444566777778889887777777766554433
No 70
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.57 E-value=1.1e-14 Score=141.63 Aligned_cols=200 Identities=16% Similarity=0.206 Sum_probs=141.4
Q ss_pred cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc--cCcceEEEe
Q 007480 49 GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI--DGSRTSVFY 122 (602)
Q Consensus 49 al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~--~~~~~~vvl 122 (602)
-.++++|+++.+ +|+||.|+||+||||+|++|+++ ..|++| |.+.+.+....+ .++++++++
T Consensus 14 ~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatl------------L~P~~G~v~idg~d~~~~p~~vrr~IGVl~ 81 (245)
T COG4555 14 KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATL------------LIPDSGKVTIDGVDTVRDPSFVRRKIGVLF 81 (245)
T ss_pred HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHh------------ccCCCceEEEeecccccChHHHhhhcceec
Confidence 445889999988 99999999999999999999999 489999 999998876543 467889998
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
+..|+. .++|+++|+.|...+ |.+.+...+.+++.|...+++.+.+.
T Consensus 82 -~e~glY--~RlT~rEnl~~Fa~L-------~~l~~~~~kari~~l~k~l~l~~~~~----------------------- 128 (245)
T COG4555 82 -GERGLY--ARLTARENLKYFARL-------NGLSRKEIKARIAELSKRLQLLEYLD----------------------- 128 (245)
T ss_pred -CCcChh--hhhhHHHHHHHHHHH-------hhhhhhHHHHHHHHHHHHhChHHHHH-----------------------
Confidence 555554 488999999987665 77766666777777777666544332
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~ 282 (602)
+...++|.+.++...++ ++. +..|.+ .++|||+++||--. ...|.+.
T Consensus 129 -----------------------rRv~~~S~G~kqkV~iA---RAl-vh~P~i---~vlDEP~sGLDi~~---~r~~~df 175 (245)
T COG4555 129 -----------------------RRVGEFSTGMKQKVAIA---RAL-VHDPSI---LVLDEPTSGLDIRT---RRKFHDF 175 (245)
T ss_pred -----------------------HHHhhhchhhHHHHHHH---HHH-hcCCCe---EEEcCCCCCccHHH---HHHHHHH
Confidence 22344556666666666 333 377887 88999999999988 5566666
Q ss_pred HhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 283 VASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 283 I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
|.....+. .....-++.+ -.+-+++.|-.|.+|++...+|..+.
T Consensus 176 i~q~k~eg-r~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l 220 (245)
T COG4555 176 IKQLKNEG-RAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEAL 220 (245)
T ss_pred HHHhhcCC-cEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHH
Confidence 66553221 1112222221 22335566667789998777776543
No 71
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.57 E-value=1.1e-14 Score=143.88 Aligned_cols=171 Identities=21% Similarity=0.226 Sum_probs=110.3
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEEEe
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSVFY 122 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~vvl 122 (602)
..+|+++++.+ ++++|+||||||||||+++|+|. .++++| |.+.+.++... .....+++++
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL------------LGPTSGEVLVDGKDLTKLSLKELRRKVGLVF 81 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcC------------CCCCCceEEECCEEcccCCHHHHHhhceEEe
Confidence 45899999888 89999999999999999999998 478999 99998766421 1235688999
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
++.... ....++.||+.++... +.......++
T Consensus 82 q~~~~~--~~~~t~~~~l~~~~~~-------~~~~~~~~~~--------------------------------------- 113 (211)
T cd03225 82 QNPDDQ--FFGPTVEEEVAFGLEN-------LGLPEEEIEE--------------------------------------- 113 (211)
T ss_pred cChhhh--cCCCcHHHHHHHHHHH-------cCCCHHHHHH---------------------------------------
Confidence 886421 1245888887664321 1100000011
Q ss_pred CCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKK 281 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~ 281 (602)
.+++.++..+. ...++.+.++|++++++..++ .++. .+|.+ .+.|||+++||+... +.+.+
T Consensus 114 --------~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la---ral~-~~p~l---lllDEPt~~LD~~~~---~~~~~ 175 (211)
T cd03225 114 --------RVEEALELVGLEGLRDRSPFTLSGGQKQRVAIA---GVLA-MDPDI---LLLDEPTAGLDPAGR---RELLE 175 (211)
T ss_pred --------HHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHH---HHHh-cCCCE---EEEcCCcccCCHHHH---HHHHH
Confidence 11122222111 011345678899999998888 4444 67777 889999999999994 45666
Q ss_pred HHhhhcCCCccceEeecc
Q 007480 282 LVASVTRPKIVQGKFLNG 299 (602)
Q Consensus 282 ~I~~~~~pK~l~g~~ltG 299 (602)
.+.+..+. ...-..+++
T Consensus 176 ~l~~~~~~-~~tvi~~sH 192 (211)
T cd03225 176 LLKKLKAE-GKTIIIVTH 192 (211)
T ss_pred HHHHHHHc-CCEEEEEeC
Confidence 66655432 223334444
No 72
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.57 E-value=1.3e-14 Score=148.59 Aligned_cols=202 Identities=16% Similarity=0.170 Sum_probs=127.4
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEEEe
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSVFY 122 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~vvl 122 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|. .+++.| |.+.+.++... .....+++++
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~------------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGE------------LSPDSGEVRLNGRPLADWSPAELARRRAVLP 82 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCCEEEECCEEcccCCHHHhhhheEEEc
Confidence 45899999988 89999999999999999999998 478999 99998765321 1234688998
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
++...+ ...++.|++.++... +......
T Consensus 83 q~~~~~---~~~tv~e~l~~~~~~-------~~~~~~~------------------------------------------ 110 (258)
T PRK13548 83 QHSSLS---FPFTVEEVVAMGRAP-------HGLSRAE------------------------------------------ 110 (258)
T ss_pred cCCcCC---CCCCHHHHHHhhhcc-------cCCCcHH------------------------------------------
Confidence 885432 245888887764321 0000000
Q ss_pred CCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEc-----cCccchhcccCCCCCCCCCHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSL-----PQPHLLRTKLCDMKDEELDPIYVKRR 276 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L-----~~P~~~~~~L~d~p~~~Ld~~F~e~~ 276 (602)
..+.++++|+.++. ...++.+.++|++++++..++ .+++. .+|.+ .+.|||+++||+...
T Consensus 111 -----~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la---~al~~~~~~~~~p~l---llLDEPt~~LD~~~~--- 176 (258)
T PRK13548 111 -----DDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLA---RVLAQLWEPDGPPRW---LLLDEPTSALDLAHQ--- 176 (258)
T ss_pred -----HHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHH---HHHhcccccCCCCCE---EEEeCCcccCCHHHH---
Confidence 01122233333222 112456778999999998887 45443 36666 789999999999994
Q ss_pred HHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHHHh
Q 007480 277 EQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEVFN 329 (602)
Q Consensus 277 ~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~~n 329 (602)
..+.+.+.+..+.+...-..+++. ....-+.+++-.+++|.+...++..+..+
T Consensus 177 ~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 177 HHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 456666655542222223344443 22223445555668888765555555443
No 73
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=5.1e-15 Score=153.99 Aligned_cols=201 Identities=20% Similarity=0.212 Sum_probs=133.5
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-----ccCcceEE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-----IDGSRTSV 120 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-----~~~~~~~v 120 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|. .++++| |++.|.++... .....+++
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl------------~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~ 87 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL------------LKPTSGKIIIDGVDITDKKVKLSDIRKKVGL 87 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC------------CCCCccEEEECCEECCCcCccHHHHhhceEE
Confidence 35899999988 89999999999999999999998 488999 99999876431 12457899
Q ss_pred EeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhh
Q 007480 121 FYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQR 200 (602)
Q Consensus 121 vl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvR 200 (602)
++||+.... ...++.|++.|.... ++....
T Consensus 88 v~q~~~~~~--~~~tv~e~l~~~~~~-------~~~~~~----------------------------------------- 117 (287)
T PRK13637 88 VFQYPEYQL--FEETIEKDIAFGPIN-------LGLSEE----------------------------------------- 117 (287)
T ss_pred EecCchhcc--ccccHHHHHHhHHHH-------CCCCHH-----------------------------------------
Confidence 999864221 135888888775422 111111
Q ss_pred ccCCcccHHHHHHHHHHhCCCC---CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHH
Q 007480 201 DFLQGKSVQEMVHDALQRVPND---KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRRE 277 (602)
Q Consensus 201 Df~~g~t~~eyLe~aL~~~~~~---~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~ 277 (602)
...+.+.++|+.++.. ..++.+.++|++++++..++ .+++ ..|.+ .+.|||+++||+.. ..
T Consensus 118 ------~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iA---raL~-~~P~l---lllDEPt~gLD~~~---~~ 181 (287)
T PRK13637 118 ------EIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIA---GVVA-MEPKI---LILDEPTAGLDPKG---RD 181 (287)
T ss_pred ------HHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHH---HHHH-cCCCE---EEEECCccCCCHHH---HH
Confidence 1112223333333321 12456778999999999888 4444 67777 78999999999999 45
Q ss_pred HHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 278 QLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 278 ~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
++.+.+.+..+.....-..+|+.. .+..+.+.+-.+++|.+-..++..+..
T Consensus 182 ~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 182 EILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 666666665432233344555542 233344556666889886666665554
No 74
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=7.2e-15 Score=159.50 Aligned_cols=199 Identities=16% Similarity=0.204 Sum_probs=130.6
Q ss_pred cccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc-------cCcceE
Q 007480 51 ETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI-------DGSRTS 119 (602)
Q Consensus 51 ~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~-------~~~~~~ 119 (602)
.+|+++++.+ ++++|+||||||||||+++|+|+ .+++.| |++.+.++.... .+..++
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl------------~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~ig 109 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRL------------IEPTRGQVLIDGVDIAKISDAELREVRRKKIA 109 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcC------------CCCCCCEEEECCEECCcCCHHHHHHHHhCCEE
Confidence 3689999888 89999999999999999999998 488999 999998764211 124689
Q ss_pred EEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhh
Q 007480 120 VFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQ 199 (602)
Q Consensus 120 vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vv 199 (602)
+++|+...+ +..|+.||+.+.+.. ++.......+
T Consensus 110 yv~Q~~~l~---~~~Tv~enl~~~~~~-------~~~~~~~~~~------------------------------------ 143 (400)
T PRK10070 110 MVFQSFALM---PHMTVLDNTAFGMEL-------AGINAEERRE------------------------------------ 143 (400)
T ss_pred EEECCCcCC---CCCCHHHHHHHHHHh-------cCCCHHHHHH------------------------------------
Confidence 999986543 367899998876532 1111111111
Q ss_pred hccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHH
Q 007480 200 RDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQ 278 (602)
Q Consensus 200 RDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~ 278 (602)
.+.++|+.++. ...++.+.++|++++++..++ .+++ ..|.+ .|.|||++.||+...+ +
T Consensus 144 -----------~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LA---rAL~-~~P~i---LLLDEPts~LD~~~r~---~ 202 (400)
T PRK10070 144 -----------KALDALRQVGLENYAHSYPDELSGGMRQRVGLA---RALA-INPDI---LLMDEAFSALDPLIRT---E 202 (400)
T ss_pred -----------HHHHHHHHcCCChhhhcCcccCCHHHHHHHHHH---HHHh-cCCCE---EEEECCCccCCHHHHH---H
Confidence 12223333322 112455678999999999888 4444 67777 7999999999999954 5
Q ss_pred HHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 279 LKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 279 L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
+.+.+.+..+.....-..+|+.. .+.-+.+.+-.+++|.+-..++..+..
T Consensus 203 l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 203 MQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 55555554322222234455532 223344566667889886666655544
No 75
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=1.1e-14 Score=148.90 Aligned_cols=188 Identities=24% Similarity=0.293 Sum_probs=119.0
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeecc
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLDT 125 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~Dt 125 (602)
..+|+++++.+ ++++|+|||||||||||++|+|+ .+++.| |++.|.++.. ....+++++++.
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~~~~--~~~~~~~v~q~~ 79 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGF------------VPYQHGSITLDGKPVEG--PGAERGVVFQNE 79 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEECCEECCC--CCCcEEEEeCCC
Confidence 45899999888 89999999999999999999998 478999 9998887642 124578998886
Q ss_pred ccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCc
Q 007480 126 EGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQG 205 (602)
Q Consensus 126 eG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g 205 (602)
..+ +..++.|++.+.... ++......
T Consensus 80 ~~~---~~~tv~e~l~~~~~~-------~~~~~~~~-------------------------------------------- 105 (255)
T PRK11248 80 GLL---PWRNVQDNVAFGLQL-------AGVEKMQR-------------------------------------------- 105 (255)
T ss_pred ccC---CCCcHHHHHHhHHHH-------cCCCHHHH--------------------------------------------
Confidence 433 356888887764321 11110000
Q ss_pred ccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHh
Q 007480 206 KSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVA 284 (602)
Q Consensus 206 ~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~ 284 (602)
.+.+++.++.++. ...++.+.++|++++++..++ .++ +..|.+ .+.|||+++||+... ..+.+.+.
T Consensus 106 ---~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~la---ral-~~~p~l---llLDEPt~~LD~~~~---~~l~~~L~ 172 (255)
T PRK11248 106 ---LEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIA---RAL-AANPQL---LLLDEPFGALDAFTR---EQMQTLLL 172 (255)
T ss_pred ---HHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHH---HHH-hcCCCE---EEEeCCCccCCHHHH---HHHHHHHH
Confidence 1112222222221 111345678899999998887 344 467877 899999999999994 45666665
Q ss_pred hhcCCCccceEeeccH-HHHHHHHHHHHHHc--CCCC
Q 007480 285 SVTRPKIVQGKFLNGN-EFVAFMEQILEALN--KGEI 318 (602)
Q Consensus 285 ~~~~pK~l~g~~ltG~-~l~~lv~~yv~aIN--sG~v 318 (602)
+..+.....-..+++. .....+.+.+-.++ +|.+
T Consensus 173 ~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i 209 (255)
T PRK11248 173 KLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRV 209 (255)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEE
Confidence 5432222223445542 22223334444555 3654
No 76
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.57 E-value=9.4e-15 Score=147.58 Aligned_cols=205 Identities=20% Similarity=0.218 Sum_probs=126.8
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc------ccCcceE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME------IDGSRTS 119 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~------~~~~~~~ 119 (602)
..+|+++++.+ ++++|+||||||||||+++|+|. .++++| |.+.|.++... ..+..++
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 82 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRL------------VEPSSGSILLEGTDITKLRGKKLRKLRRRIG 82 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------cCCCccEEEECCEEhhhCCHHHHHHHHhheE
Confidence 45899999888 89999999999999999999998 478999 99998775421 0135689
Q ss_pred EEeeccccccccCCCCchhHHHHHHHhhhhh-hhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhh
Q 007480 120 VFYLDTEGFESIGKSNVYDDRIFALATVMSS-VLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLI 198 (602)
Q Consensus 120 vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS-~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~v 198 (602)
+++++...+ +..++.||+.++....... ..+.+..
T Consensus 83 ~v~q~~~~~---~~~tv~~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 118 (243)
T TIGR02315 83 MIFQHYNLI---ERLTVLENVLHGRLGYKPTWRSLLGRF----------------------------------------- 118 (243)
T ss_pred EEcCCCccc---ccccHHHHHhhcccccccchhhhhccc-----------------------------------------
Confidence 999886543 2467888876532110000 0000000
Q ss_pred hhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHH
Q 007480 199 QRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRRE 277 (602)
Q Consensus 199 vRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~ 277 (602)
.....+.+.++++.++. ...++.+.++|++++++..++ .+++ ..|.+ .+.|||+++||+... .
T Consensus 119 ------~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la---~al~-~~p~l---lllDEPt~~LD~~~~---~ 182 (243)
T TIGR02315 119 ------SEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIA---RALA-QQPDL---ILADEPIASLDPKTS---K 182 (243)
T ss_pred ------cHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCcccCCHHHH---H
Confidence 00112233334443332 112456778999999999988 4444 67777 789999999999984 4
Q ss_pred HHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHH
Q 007480 278 QLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVE 326 (602)
Q Consensus 278 ~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e 326 (602)
.+.+.+.+..+.....-..+|+.. ...-+.+.+-.+++|.+-..++..+
T Consensus 183 ~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (243)
T TIGR02315 183 QVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSE 232 (243)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHH
Confidence 556666555332122233444422 2222344555568887755555444
No 77
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=5.1e-15 Score=153.34 Aligned_cols=201 Identities=19% Similarity=0.219 Sum_probs=130.1
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEEEe
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSVFY 122 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~vvl 122 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|+ .++++| |++.|.++... ..+..+++++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 87 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL------------LEAESGQIIIDGDLLTEENVWDIRHKIGMVF 87 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCcEEEECCEECCcCcHHHHHhhceEEE
Confidence 34899999988 99999999999999999999998 488999 99999877431 1235789999
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
+++.... ...++.||+.|+... ++....
T Consensus 88 q~~~~~~--~~~tv~eni~~~~~~-------~~~~~~------------------------------------------- 115 (279)
T PRK13650 88 QNPDNQF--VGATVEDDVAFGLEN-------KGIPHE------------------------------------------- 115 (279)
T ss_pred cChHHhc--ccccHHHHHHhhHHh-------CCCCHH-------------------------------------------
Confidence 9874321 245888888765422 111110
Q ss_pred CCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKK 281 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~ 281 (602)
...+.++.+|+.++. ...++.+.++|++++++..++ ++++ ..|.+ .+.|||++.||+.. ...+.+
T Consensus 116 ----~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lA---ral~-~~p~l---LlLDEPt~~LD~~~---~~~l~~ 181 (279)
T PRK13650 116 ----EMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIA---GAVA-MRPKI---IILDEATSMLDPEG---RLELIK 181 (279)
T ss_pred ----HHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHH---HHHH-cCCCE---EEEECCcccCCHHH---HHHHHH
Confidence 111222333333332 112455678999999999988 5555 67777 79999999999998 456666
Q ss_pred HHhhhcCCCccceEeeccHHHHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 282 LVASVTRPKIVQGKFLNGNEFVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 282 ~I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
.+.+..+.....-..+++..-.....+.+-.+++|.+-..++..+..
T Consensus 182 ~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 182 TIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred HHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 66655432222334555532111234455555888876555554443
No 78
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=2.7e-14 Score=147.11 Aligned_cols=200 Identities=19% Similarity=0.256 Sum_probs=124.0
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-----ccCcceEE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-----IDGSRTSV 120 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-----~~~~~~~v 120 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|. .++++| |++.+.++... ..+..+++
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~ 81 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGL------------LRPQKGAVLWQGKPLDYSKRGLLALRQQVAT 81 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC------------CCCCccEEEECCEEcccccCCHHHHHhheEE
Confidence 45899999988 89999999999999999999998 488999 99999876321 11356899
Q ss_pred EeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhh
Q 007480 121 FYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQR 200 (602)
Q Consensus 121 vl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvR 200 (602)
+++|+.... ...++.+++.+.+.. ++.....
T Consensus 82 v~q~~~~~~--~~~~~~~~l~~~~~~-------~~~~~~~---------------------------------------- 112 (271)
T PRK13638 82 VFQDPEQQI--FYTDIDSDIAFSLRN-------LGVPEAE---------------------------------------- 112 (271)
T ss_pred EeeChhhcc--ccccHHHHHHHHHHH-------cCCCHHH----------------------------------------
Confidence 999864221 123566666554321 1110000
Q ss_pred ccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHH
Q 007480 201 DFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQL 279 (602)
Q Consensus 201 Df~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L 279 (602)
..+.++++++.++. ...++.+.++|++++++..++ .++ +..|.+ .+.|||+++||+... ..+
T Consensus 113 -------~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la---raL-~~~p~l---llLDEPt~~LD~~~~---~~l 175 (271)
T PRK13638 113 -------ITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIA---GAL-VLQARY---LLLDEPTAGLDPAGR---TQM 175 (271)
T ss_pred -------HHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHH---HHH-HcCCCE---EEEeCCcccCCHHHH---HHH
Confidence 01111222222221 111345678899999998888 444 467777 789999999999994 456
Q ss_pred HHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 280 KKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 280 ~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
.+.+.+..+ +...-..+++. .....+.+.+-.+++|.+-..++..+..
T Consensus 176 ~~~l~~~~~-~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 176 IAIIRRIVA-QGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred HHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 666665532 22222344442 2222234444556888876656555543
No 79
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=9.7e-15 Score=147.17 Aligned_cols=205 Identities=21% Similarity=0.243 Sum_probs=128.4
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc------ccCcceE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME------IDGSRTS 119 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~------~~~~~~~ 119 (602)
..+|+++++.+ ++++|+||||||||||+++|+|. .++++| |++.|.++... ..+..++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 81 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGL------------VEPTSGSVLIDGTDINKLKGKALRQLRRQIG 81 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------cCCCCceEEECCEeccccCHhHHHHHHhccE
Confidence 45899999888 89999999999999999999998 478999 99999876421 1135689
Q ss_pred EEeeccccccccCCCCchhHHHHHHHhhhhhh-hhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhh
Q 007480 120 VFYLDTEGFESIGKSNVYDDRIFALATVMSSV-LIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLI 198 (602)
Q Consensus 120 vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~-~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~v 198 (602)
+++++...+ +..++.|++.++........ -+++...
T Consensus 82 ~~~q~~~~~---~~~tv~~~l~~~~~~~~~~~~~~~~~~~---------------------------------------- 118 (241)
T cd03256 82 MIFQQFNLI---ERLSVLENVLSGRLGRRSTWRSLFGLFP---------------------------------------- 118 (241)
T ss_pred EEcccCccc---ccCcHHHHHHhhhcccchhhhhhcccCc----------------------------------------
Confidence 999886443 24688888766432100000 0000000
Q ss_pred hhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHH
Q 007480 199 QRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRRE 277 (602)
Q Consensus 199 vRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~ 277 (602)
....+.+.++++..+. ...++.+.++|++++++..++ .+++ .+|.+ .+.|||+++||+... .
T Consensus 119 -------~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la---~al~-~~p~l---lllDEPt~~LD~~~~---~ 181 (241)
T cd03256 119 -------KEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIA---RALM-QQPKL---ILADEPVASLDPASS---R 181 (241)
T ss_pred -------HHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHH---HHHh-cCCCE---EEEeCccccCCHHHH---H
Confidence 0111223333443332 112456778999999999888 4544 67777 799999999999994 4
Q ss_pred HHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHH
Q 007480 278 QLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVE 326 (602)
Q Consensus 278 ~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e 326 (602)
.+.+.+.+..+.....-..+++. .....+.+++-.|++|.+-..++..+
T Consensus 182 ~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (241)
T cd03256 182 QVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAE 231 (241)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHH
Confidence 56666655543222233445543 23233445555668888755554443
No 80
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=1e-14 Score=150.76 Aligned_cols=196 Identities=21% Similarity=0.241 Sum_probs=126.0
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc---cCcceEEEe
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI---DGSRTSVFY 122 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~---~~~~~~vvl 122 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|. .++++| |++.|.++.... ....+++++
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 85 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI------------YLPQRGRVKVMGREVNAENEKWVRSKVGLVF 85 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC------------CCCCceEEEECCEECCCCCHHHHHhhEEEEe
Confidence 45899999988 99999999999999999999998 488999 999998764311 235689999
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
+++.... ...++.|++.|.... .+......+..
T Consensus 86 q~~~~~~--~~~tv~e~l~~~~~~-------~~~~~~~~~~~-------------------------------------- 118 (274)
T PRK13647 86 QDPDDQV--FSSTVWDDVAFGPVN-------MGLDKDEVERR-------------------------------------- 118 (274)
T ss_pred cChhhhh--ccCcHHHHHHhhHHH-------cCCCHHHHHHH--------------------------------------
Confidence 9874321 245888888765421 11111111111
Q ss_pred CCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKK 281 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~ 281 (602)
+..+++.++. ...++.+.++|++++++..++ .++ +..|.+ .+.|||++.||+... .++.+
T Consensus 119 ---------~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~la---raL-~~~p~l---lllDEPt~~LD~~~~---~~l~~ 179 (274)
T PRK13647 119 ---------VEEALKAVRMWDFRDKPPYHLSYGQKKRVAIA---GVL-AMDPDV---IVLDEPMAYLDPRGQ---ETLME 179 (274)
T ss_pred ---------HHHHHHHCCCHHHhcCChhhCCHHHHHHHHHH---HHH-HcCCCE---EEEECCCcCCCHHHH---HHHHH
Confidence 2222332222 112355678899999998888 444 467877 889999999999994 45566
Q ss_pred HHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcch
Q 007480 282 LVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSL 324 (602)
Q Consensus 282 ~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl 324 (602)
.+.+..+. ...-..+|+.. .+..+.+.+-.+++|.+-..++.
T Consensus 180 ~l~~~~~~-g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~ 222 (274)
T PRK13647 180 ILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK 222 (274)
T ss_pred HHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 66555321 22223445432 22223444555688887555554
No 81
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.57 E-value=2.3e-14 Score=144.78 Aligned_cols=220 Identities=15% Similarity=0.262 Sum_probs=135.2
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGN 107 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~ 107 (602)
|++.+++.+.++ . ...+|+++++.+ ++++|+|+||+||||||++|+|. .++++| |++.+.
T Consensus 1 ~~i~~~~l~~~~--~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~------------~~p~~G~i~~~g~ 64 (242)
T TIGR03411 1 PILYLEGLSVSF--D--GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGK------------TRPDEGSVLFGGT 64 (242)
T ss_pred CeEEEEeeEEEc--C--CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCCCeEEECCe
Confidence 345555443322 2 345899999988 89999999999999999999998 478999 999998
Q ss_pred ccCccc----cCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccC
Q 007480 108 PVEMEI----DGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVK 183 (602)
Q Consensus 108 ~~~~~~----~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~ 183 (602)
++.... .+..+++++++...+ +..++.||+.++... ... ++
T Consensus 65 ~~~~~~~~~~~~~~i~~~~q~~~~~---~~~tv~~nl~~~~~~--~~~-~~----------------------------- 109 (242)
T TIGR03411 65 DLTGLPEHQIARAGIGRKFQKPTVF---ENLTVFENLELALPR--DKS-VF----------------------------- 109 (242)
T ss_pred ecCCCCHHHHHhcCeeEeccccccC---CCCCHHHHHHHhhhc--ccc-cc-----------------------------
Confidence 764211 124588998876444 356888887764321 000 00
Q ss_pred CcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCC
Q 007480 184 GQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCD 262 (602)
Q Consensus 184 ~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d 262 (602)
+ .++-. ......+.++++++.++. +..++.+.++|+++++...++ .++. .+|.+ .+.|
T Consensus 110 -------~--~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~la---ral~-~~p~~---lllD 168 (242)
T TIGR03411 110 -------A--SLFFR-----LSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIG---MLLM-QDPKL---LLLD 168 (242)
T ss_pred -------c--ccccc-----cHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH---HHHh-cCCCE---EEec
Confidence 0 00000 000112334444544433 122456788999999998888 4554 67777 8999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 263 MKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 263 ~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
||+++||+... ..+.+.+.+..+ ...-..+++. ....-+.+.+-.+++|.+-..++..+..
T Consensus 169 EPt~~LD~~~~---~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 169 EPVAGMTDEET---EKTAELLKSLAG--KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred CCccCCCHHHH---HHHHHHHHHHhc--CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 99999999994 566666666543 2222344442 2222233445556788876655554443
No 82
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.56 E-value=1.3e-14 Score=154.16 Aligned_cols=220 Identities=16% Similarity=0.181 Sum_probs=142.3
Q ss_pred cEEeeCCCcceEEecc---------ccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCC
Q 007480 32 PIVEPDPGHTKLRLSR---------EGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKT 99 (602)
Q Consensus 32 plv~~d~~~~~l~~~~---------eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~T 99 (602)
|++.+++.+..|.... ....+++++++.+ ++++|+|+||||||||+++|+|+ .+++
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl------------~~p~ 74 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGL------------VKAT 74 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCC------------CCCC
Confidence 5677776555453211 1356899999998 89999999999999999999998 4789
Q ss_pred cc-eEEcCcccCcc------ccCcceEEEeeccc-cccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHH
Q 007480 100 KG-IWVWGNPVEME------IDGSRTSVFYLDTE-GFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFA 171 (602)
Q Consensus 100 kG-Iwi~~~~~~~~------~~~~~~~vvl~Dte-G~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~ 171 (602)
.| |++.|.++... ..+..+++++||+. .+ .+..++.|++.+.+.. +.. ..+.+
T Consensus 75 ~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l--~p~~tv~~~i~~~l~~-------~~~--~~~~~-------- 135 (331)
T PRK15079 75 DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASL--NPRMTIGEIIAEPLRT-------YHP--KLSRQ-------- 135 (331)
T ss_pred CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhc--CCCCCHHHHHHHHHHH-------hcc--CCCHH--------
Confidence 99 99999876431 12357999999974 23 2467899998876533 110 00000
Q ss_pred HhhhhhhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEE
Q 007480 172 VELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFS 249 (602)
Q Consensus 172 ~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~ 249 (602)
...+.+++.|+.++.. ..++.+.++|++++++..++ .+++
T Consensus 136 -----------------------------------~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iA---rAL~ 177 (331)
T PRK15079 136 -----------------------------------EVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIA---RALI 177 (331)
T ss_pred -----------------------------------HHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHH---HHHh
Confidence 0111222233332221 12456778999999999988 4444
Q ss_pred ccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 250 LPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 250 L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
..|.+ .+.|||++.||+.... ++.+.+.++.+.....-..+|+. .++..+.+.+-.|..|.+-..++..++
T Consensus 178 -~~P~l---lilDEPts~LD~~~~~---~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i 249 (331)
T PRK15079 178 -LEPKL---IICDEPVSALDVSIQA---QVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEV 249 (331)
T ss_pred -cCCCE---EEEeCCCccCCHHHHH---HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 67877 8999999999999955 45555554433223344566663 333344556666688887555554444
No 83
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=1.1e-14 Score=150.86 Aligned_cols=215 Identities=19% Similarity=0.202 Sum_probs=132.6
Q ss_pred EEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcc
Q 007480 33 IVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNP 108 (602)
Q Consensus 33 lv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~ 108 (602)
++..++.+ +.+......+|+++++.+ ++++|+|+||+|||||+++|+|. .+++.| |.+.|.+
T Consensus 5 ~l~~~~l~--~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~------------~~p~~G~i~~~g~~ 70 (279)
T PRK13635 5 IIRVEHIS--FRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL------------LLPEAGTITVGGMV 70 (279)
T ss_pred eEEEEEEE--EEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC------------CCCCCcEEEECCEE
Confidence 45555433 233222345899999988 89999999999999999999998 488999 9999987
Q ss_pred cCcc---ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCc
Q 007480 109 VEME---IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQ 185 (602)
Q Consensus 109 ~~~~---~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e 185 (602)
+... .....++++++++..+. ...++.||+.++... ++.......+.+.++...++|.
T Consensus 71 i~~~~~~~~~~~i~~~~q~~~~~~--~~~tv~enl~~~~~~-------~~~~~~~~~~~~~~~l~~~gL~---------- 131 (279)
T PRK13635 71 LSEETVWDVRRQVGMVFQNPDNQF--VGATVQDDVAFGLEN-------IGVPREEMVERVDQALRQVGME---------- 131 (279)
T ss_pred CCcCcHHHHhhheEEEEeCHHHhc--ccccHHHHHhhhHhh-------CCCCHHHHHHHHHHHHHHcCCh----------
Confidence 6431 12356899999974221 145888888765422 1111111111122222222211
Q ss_pred ccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCC
Q 007480 186 DVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKD 265 (602)
Q Consensus 186 ~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~ 265 (602)
...++.+..+|+++++...++ .++ +.+|.+ .+.|||+
T Consensus 132 ------------------------------------~~~~~~~~~LS~G~~qrv~la---ral-~~~p~l---llLDEPt 168 (279)
T PRK13635 132 ------------------------------------DFLNREPHRLSGGQKQRVAIA---GVL-ALQPDI---IILDEAT 168 (279)
T ss_pred ------------------------------------hhhhCCcccCCHHHHHHHHHH---HHH-HcCCCE---EEEeCCc
Confidence 111345567899999988887 444 477887 8999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 266 EELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 266 ~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
++||+.. ...+.+.+.+..+.....-..+++.. ... ..+.+-.+++|.+-..++..+.
T Consensus 169 ~gLD~~~---~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~ 227 (279)
T PRK13635 169 SMLDPRG---RREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEILEEGTPEEI 227 (279)
T ss_pred ccCCHHH---HHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHH
Confidence 9999998 45666666665432233334455432 222 1333444577877555554443
No 84
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=6.2e-15 Score=153.61 Aligned_cols=200 Identities=17% Similarity=0.191 Sum_probs=133.7
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-------ccCcce
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-------IDGSRT 118 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-------~~~~~~ 118 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|. .+++.| |++.|+++... ..+..+
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i 87 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGL------------LQPTSGTVTIGERVITAGKKNKKLKPLRKKV 87 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC------------CCCCCcEEEECCEECccccccchHHHHHhhE
Confidence 45899999998 89999999999999999999998 488999 99999876420 123568
Q ss_pred EEEeecccc-ccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhh
Q 007480 119 SVFYLDTEG-FESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWL 197 (602)
Q Consensus 119 ~vvl~DteG-~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~ 197 (602)
++++||+.. +. ..++.||+.|+... ++...
T Consensus 88 g~v~q~~~~~l~---~~tv~eni~~~~~~-------~~~~~--------------------------------------- 118 (290)
T PRK13634 88 GIVFQFPEHQLF---EETVEKDICFGPMN-------FGVSE--------------------------------------- 118 (290)
T ss_pred EEEeeCchhhhh---hhhHHHHHHHHHHH-------cCCCH---------------------------------------
Confidence 999998742 22 24788887765321 11000
Q ss_pred hhhccCCcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHH
Q 007480 198 IQRDFLQGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKR 275 (602)
Q Consensus 198 vvRDf~~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~ 275 (602)
.+..+.++++|+.++.. ..++.+.++|++++++..++ .++ +..|.+ .+.|||++.||+...
T Consensus 119 --------~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lA---raL-~~~P~l---lllDEPt~~LD~~~~-- 181 (290)
T PRK13634 119 --------EDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIA---GVL-AMEPEV---LVLDEPTAGLDPKGR-- 181 (290)
T ss_pred --------HHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHH---HHH-HcCCCE---EEEECCcccCCHHHH--
Confidence 01122334444444431 12456788999999999988 444 467877 899999999999994
Q ss_pred HHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 276 REQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 276 ~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
..+.+.+.+..+.....-..+|+. ..+..+.+.+-.|++|.+-..++..+..
T Consensus 182 -~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 182 -KEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred -HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 456666655533223333455553 2333345566677889886666655554
No 85
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.56 E-value=1.7e-14 Score=144.05 Aligned_cols=191 Identities=17% Similarity=0.247 Sum_probs=121.8
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeecc
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLDT 125 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~Dt 125 (602)
..+|+++++.+ ++++|+|+||+|||||+++|+|. .++++| |++.+.++... ....+++++++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~~~~~~~~-~~~~~~~~~q~~ 79 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGI------------LRPTSGEIIFDGHPWTRK-DLHKIGSLIESP 79 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEecccc-ccccEEEEcCCC
Confidence 45899999888 89999999999999999999998 488999 99998776422 124688888876
Q ss_pred ccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCc
Q 007480 126 EGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQG 205 (602)
Q Consensus 126 eG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g 205 (602)
.-+ +..++.|++.+.... +. .+++.+..+...+++.+
T Consensus 80 ~~~---~~~t~~~~~~~~~~~-------~~----~~~~~~~~~l~~~~l~~----------------------------- 116 (223)
T TIGR03740 80 PLY---ENLTARENLKVHTTL-------LG----LPDSRIDEVLNIVDLTN----------------------------- 116 (223)
T ss_pred Ccc---ccCCHHHHHHHHHHH-------cC----CCHHHHHHHHHHcCCcH-----------------------------
Confidence 433 245788887654321 11 01112222222111110
Q ss_pred ccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhh
Q 007480 206 KSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVAS 285 (602)
Q Consensus 206 ~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~ 285 (602)
..++.+.++|++++++..++ .+++ ..|.+ .+.|+|+++||+... +.+.+.+.+
T Consensus 117 -----------------~~~~~~~~LS~G~~~rv~la---ral~-~~p~l---lllDEP~~~LD~~~~---~~l~~~L~~ 169 (223)
T TIGR03740 117 -----------------TGKKKAKQFSLGMKQRLGIA---IALL-NHPKL---LILDEPTNGLDPIGI---QELRELIRS 169 (223)
T ss_pred -----------------HHhhhHhhCCHHHHHHHHHH---HHHh-cCCCE---EEECCCccCCCHHHH---HHHHHHHHH
Confidence 01234567888998888887 4444 67777 789999999999994 456666665
Q ss_pred hcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcch
Q 007480 286 VTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSL 324 (602)
Q Consensus 286 ~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl 324 (602)
..+ +...-..+++. .+..-+.+.+-.+++|.+-..+++
T Consensus 170 ~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~ 208 (223)
T TIGR03740 170 FPE-QGITVILSSHILSEVQQLADHIGIISEGVLGYQGKI 208 (223)
T ss_pred HHH-CCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecCh
Confidence 532 12222344442 222334455556678887555544
No 86
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.56 E-value=1.6e-14 Score=143.02 Aligned_cols=158 Identities=23% Similarity=0.266 Sum_probs=106.8
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc------ccCcceE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME------IDGSRTS 119 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~------~~~~~~~ 119 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|. .+++.| |++.+.++... ..+..++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~ 81 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE------------ELPTSGTIRVNGQDVSDLRGRAIPYLRRKIG 81 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCceEEEECCEEcccCCHHHHHHHHHheE
Confidence 35899999888 89999999999999999999998 478999 99988766421 1234689
Q ss_pred EEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhh
Q 007480 120 VFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQ 199 (602)
Q Consensus 120 vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vv 199 (602)
+++++...+ +..++.||+.+.... +.......
T Consensus 82 ~v~q~~~~~---~~~t~~~~l~~~~~~-------~~~~~~~~-------------------------------------- 113 (214)
T cd03292 82 VVFQDFRLL---PDRNVYENVAFALEV-------TGVPPREI-------------------------------------- 113 (214)
T ss_pred EEecCchhc---cCCcHHHHHHHHHHH-------cCCCHHHH--------------------------------------
Confidence 999886543 356888888765422 11100000
Q ss_pred hccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHH
Q 007480 200 RDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQ 278 (602)
Q Consensus 200 RDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~ 278 (602)
.+.++++++..+. ...++.+.++|++++++..++ .+++ ..|.+ .+.|||++.||+... +.
T Consensus 114 ---------~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la---ral~-~~p~l---lllDEPt~~LD~~~~---~~ 174 (214)
T cd03292 114 ---------RKRVPAALELVGLSHKHRALPAELSGGEQQRVAIA---RAIV-NSPTI---LIADEPTGNLDPDTT---WE 174 (214)
T ss_pred ---------HHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHH---HHHH-cCCCE---EEEeCCCCcCCHHHH---HH
Confidence 1111222222221 011345668899999998887 4544 67777 789999999999994 45
Q ss_pred HHHHHhhh
Q 007480 279 LKKLVASV 286 (602)
Q Consensus 279 L~~~I~~~ 286 (602)
+.+.+.+.
T Consensus 175 ~~~~l~~~ 182 (214)
T cd03292 175 IMNLLKKI 182 (214)
T ss_pred HHHHHHHH
Confidence 66666554
No 87
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=1.4e-14 Score=149.09 Aligned_cols=217 Identities=16% Similarity=0.181 Sum_probs=132.7
Q ss_pred cccEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEc
Q 007480 30 AFPIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVW 105 (602)
Q Consensus 30 ~iplv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~ 105 (602)
+.|++.+++.+. .+......+|+++++.+ ++++|+||||||||||+++|+|. .++++| |++.
T Consensus 4 ~~~~l~i~~l~~--~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl------------~~~~~G~i~~~ 69 (269)
T PRK13648 4 KNSIIVFKNVSF--QYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI------------EKVKSGEIFYN 69 (269)
T ss_pred CCceEEEEEEEE--EcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCceEEEEC
Confidence 345666665433 33222234899999888 89999999999999999999998 478999 9999
Q ss_pred CcccCcc---ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhccc
Q 007480 106 GNPVEME---IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRV 182 (602)
Q Consensus 106 ~~~~~~~---~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~ 182 (602)
|.++... ..+..++++++++..+. +..++.+++.+.+.. +.......
T Consensus 70 g~~~~~~~~~~~~~~i~~v~q~~~~~~--~~~~v~~~~~~~~~~-------~~~~~~~~--------------------- 119 (269)
T PRK13648 70 NQAITDDNFEKLRKHIGIVFQNPDNQF--VGSIVKYDVAFGLEN-------HAVPYDEM--------------------- 119 (269)
T ss_pred CEECCcCCHHHHHhheeEEEeChHHhc--ccccHHHHHHhhHHh-------cCCCHHHH---------------------
Confidence 9876421 12356899999874221 234667777664322 11000000
Q ss_pred CCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccC
Q 007480 183 KGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLC 261 (602)
Q Consensus 183 ~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~ 261 (602)
.+.++.+++..+. +..++.+.++|++++++..++ .++ +.+|.+ .+.
T Consensus 120 --------------------------~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la---ral-~~~p~l---llL 166 (269)
T PRK13648 120 --------------------------HRRVSEALKQVDMLERADYEPNALSGGQKQRVAIA---GVL-ALNPSV---IIL 166 (269)
T ss_pred --------------------------HHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHH---HHH-HcCCCE---EEE
Confidence 1112222222221 111345678899999998888 444 467777 899
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 262 DMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 262 d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
|||++.||+... ..+.+.+.+..+.....-..+++.. .... .+.+-.+++|.+-..++..+.
T Consensus 167 DEPt~~LD~~~~---~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~ 229 (269)
T PRK13648 167 DEATSMLDPDAR---QNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEI 229 (269)
T ss_pred eCCcccCCHHHH---HHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHH
Confidence 999999999994 4556666554332222233444432 2222 445555688887555554443
No 88
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=8.9e-15 Score=153.64 Aligned_cols=199 Identities=15% Similarity=0.137 Sum_probs=130.9
Q ss_pred cccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc---------------
Q 007480 51 ETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM--------------- 111 (602)
Q Consensus 51 ~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~--------------- 111 (602)
.+|+++++.+ ++++|+|+||||||||+++|+|. .+++.| |.+.+.+...
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl------------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 88 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL------------LLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLV 88 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC------------CCCCCcEEEEeceecccccccccccccccccc
Confidence 5899999998 89999999999999999999998 488999 8887654310
Q ss_pred ------------cccCcceEEEeecccc-ccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhh
Q 007480 112 ------------EIDGSRTSVFYLDTEG-FESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEF 178 (602)
Q Consensus 112 ------------~~~~~~~~vvl~DteG-~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i 178 (602)
...+..+++++|+++. +. ..+++|++.|++.. +......
T Consensus 89 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~---~~tv~e~i~~~~~~-------~~~~~~~------------------ 140 (305)
T PRK13651 89 IQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF---EQTIEKDIIFGPVS-------MGVSKEE------------------ 140 (305)
T ss_pred cccccccccchHHHHHhceEEEeeCcccccc---cccHHHHHHhhHHH-------cCCCHHH------------------
Confidence 0123568999998643 22 35888998876532 1111111
Q ss_pred hcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEccCccch
Q 007480 179 YGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLL 256 (602)
Q Consensus 179 ~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~ 256 (602)
..+.++++++.++.. ..++.+.++|++++++..++ .++ +..|.+
T Consensus 141 -----------------------------~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA---~aL-~~~P~l- 186 (305)
T PRK13651 141 -----------------------------AKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALA---GIL-AMEPDF- 186 (305)
T ss_pred -----------------------------HHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHH---HHH-HhCCCE-
Confidence 111223333333321 12456788999999999988 444 467877
Q ss_pred hcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHHh
Q 007480 257 RTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVFN 329 (602)
Q Consensus 257 ~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~n 329 (602)
.+.|||++.||+.. ...+.+.+.++.+ ....-..+++.. .+..+.+.+-.+++|.+-..++..+...
T Consensus 187 --LlLDEPt~~LD~~~---~~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 187 --LVFDEPTAGLDPQG---VKEILEIFDNLNK-QGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred --EEEeCCCCCCCHHH---HHHHHHHHHHHHH-CCCEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 89999999999998 4556666655532 233334566643 3334455666668898766666655543
No 89
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=1e-14 Score=151.19 Aligned_cols=201 Identities=14% Similarity=0.201 Sum_probs=128.5
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc----ccCcceEEE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME----IDGSRTSVF 121 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~----~~~~~~~vv 121 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|. .+++.| |.+.+.++... .....++++
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v 90 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL------------LIPSEGKVYVDGLDTSDEENLWDIRNKAGMV 90 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCEeccccccHHHHhhheEEE
Confidence 45899999988 89999999999999999999998 488999 99998876421 124568999
Q ss_pred eeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhc
Q 007480 122 YLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRD 201 (602)
Q Consensus 122 l~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRD 201 (602)
++++..... ..++.|++.|.... +......
T Consensus 91 ~q~~~~~~~--~~~v~~~l~~~~~~-------~~~~~~~----------------------------------------- 120 (280)
T PRK13633 91 FQNPDNQIV--ATIVEEDVAFGPEN-------LGIPPEE----------------------------------------- 120 (280)
T ss_pred ecChhhhhc--cccHHHHHHhhHhh-------cCCCHHH-----------------------------------------
Confidence 998743211 23677777664321 1111000
Q ss_pred cCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHH
Q 007480 202 FLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLK 280 (602)
Q Consensus 202 f~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~ 280 (602)
.++.++.+++.++. ...++.+.++|+++++...++ .++ +.+|.+ .+.|||+++||+... ..+.
T Consensus 121 ------~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~la---ral-~~~p~l---lllDEPt~gLD~~~~---~~l~ 184 (280)
T PRK13633 121 ------IRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIA---GIL-AMRPEC---IIFDEPTAMLDPSGR---REVV 184 (280)
T ss_pred ------HHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHH---HHH-HcCCCE---EEEeCCcccCCHHHH---HHHH
Confidence 11122333333322 111355678899999998888 444 477877 899999999999994 5666
Q ss_pred HHHhhhcCCCccceEeeccHHHHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 281 KLVASVTRPKIVQGKFLNGNEFVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 281 ~~I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
+.+.+..+.....-..+++..-.....+.+-.+++|.+-..++..+..
T Consensus 185 ~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 185 NTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 666655432233334555532211123445555788876666655543
No 90
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=1.9e-14 Score=145.62 Aligned_cols=196 Identities=18% Similarity=0.190 Sum_probs=124.7
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEEEe
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSVFY 122 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~vvl 122 (602)
..+|+++++.+ ++++|+|||||||||||++|+|. .+++.| |++.+.++... .....+++++
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRL------------IEPTSGEIFIDGEDIREQDPVELRRKIGYVI 81 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCceEEECCeEcCcCChHHhhcceEEEc
Confidence 45899999888 89999999999999999999998 478999 99998876421 1235688998
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
++..-+ +..|+.||+.+.... .+.......+.+
T Consensus 82 q~~~~~---~~~tv~e~l~~~~~~-------~~~~~~~~~~~~------------------------------------- 114 (242)
T cd03295 82 QQIGLF---PHMTVEENIALVPKL-------LKWPKEKIRERA------------------------------------- 114 (242)
T ss_pred cCcccc---CCCcHHHHHHHHHHH-------cCCCHHHHHHHH-------------------------------------
Confidence 876433 246888888764321 111101111112
Q ss_pred CCcccHHHHHHHHHHhCCCC---CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPND---KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQL 279 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~~---~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L 279 (602)
+++++.++.. ..++.+.++|+++++...++ .+++ .+|.+ .+.|||++.||+... +.+
T Consensus 115 ----------~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~la---ral~-~~p~l---lllDEPt~~LD~~~~---~~l 174 (242)
T cd03295 115 ----------DELLALVGLDPAEFADRYPHELSGGQQQRVGVA---RALA-ADPPL---LLMDEPFGALDPITR---DQL 174 (242)
T ss_pred ----------HHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHH---HHHh-cCCCE---EEecCCcccCCHHHH---HHH
Confidence 2222222211 11345678899999998888 4444 67777 789999999999984 456
Q ss_pred HHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcch
Q 007480 280 KKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSL 324 (602)
Q Consensus 280 ~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl 324 (602)
.+.+.+..+.....-..+++.. ....+.+++-.+++|.+-..++.
T Consensus 175 ~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 220 (242)
T cd03295 175 QEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTP 220 (242)
T ss_pred HHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 6666555332122233444422 22334455666788887544443
No 91
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.55 E-value=3.3e-14 Score=137.82 Aligned_cols=158 Identities=23% Similarity=0.274 Sum_probs=119.8
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeecc
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLDT 125 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~Dt 125 (602)
..+|+++|..| +.|.++||+|||||||||+++|. .+|..| |.+++.++.-. +.+.++|||+.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf------------~~P~~G~i~l~~r~i~gP--gaergvVFQ~~ 83 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGF------------VTPSRGSIQLNGRRIEGP--GAERGVVFQNE 83 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcC------------cCcccceEEECCEeccCC--CccceeEeccC
Confidence 44899999988 89999999999999999999998 589999 99999988643 56789999987
Q ss_pred ccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCc
Q 007480 126 EGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQG 205 (602)
Q Consensus 126 eG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g 205 (602)
..+ |+.++.||+.|+|.. -.+.+...
T Consensus 84 ~Ll---PWl~~~dNvafgL~l-------~Gi~k~~R-------------------------------------------- 109 (259)
T COG4525 84 ALL---PWLNVIDNVAFGLQL-------RGIEKAQR-------------------------------------------- 109 (259)
T ss_pred ccc---hhhHHHHHHHHHHHh-------cCCCHHHH--------------------------------------------
Confidence 554 589999999999976 22222221
Q ss_pred ccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHh
Q 007480 206 KSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVA 284 (602)
Q Consensus 206 ~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~ 284 (602)
.+...+.|+.++. ...++.+-++|++.+|..-++ ++.+ ..|.. .|.|||...||.-..+++.++.=.+.
T Consensus 110 ---~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiA---RALa-~eP~~---LlLDEPfgAlDa~tRe~mQelLldlw 179 (259)
T COG4525 110 ---REIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIA---RALA-VEPQL---LLLDEPFGALDALTREQMQELLLDLW 179 (259)
T ss_pred ---HHHHHHHHHHhCcccccccceEeecchHHHHHHHH---HHhh-cCcce---EeecCchhhHHHHHHHHHHHHHHHHH
Confidence 2333444444443 223567778899999988887 5555 67887 88999999999999777666544444
Q ss_pred h
Q 007480 285 S 285 (602)
Q Consensus 285 ~ 285 (602)
+
T Consensus 180 ~ 180 (259)
T COG4525 180 Q 180 (259)
T ss_pred H
Confidence 3
No 92
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=1.9e-14 Score=142.40 Aligned_cols=188 Identities=18% Similarity=0.193 Sum_probs=117.9
Q ss_pred ccccccccccE--EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc--ccCcceEEEeec
Q 007480 50 LETIRRITNPI--AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME--IDGSRTSVFYLD 124 (602)
Q Consensus 50 l~iL~~Is~~V--~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~--~~~~~~~vvl~D 124 (602)
..+|+++++.+ .+++|+||||||||||+++|+|. .+++.| |++.+.++... ..+..+++++++
T Consensus 13 ~~~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 80 (211)
T cd03264 13 KRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATL------------TPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQE 80 (211)
T ss_pred EEEEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCC------------CCCCccEEEECCCccccchHHHHhheEEecCC
Confidence 35889998877 59999999999999999999998 488999 99998776421 124568999998
Q ss_pred cccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCC
Q 007480 125 TEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQ 204 (602)
Q Consensus 125 teG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~ 204 (602)
...+. ..++.|++.+.... ++......++
T Consensus 81 ~~~~~---~~tv~~~l~~~~~~-------~~~~~~~~~~----------------------------------------- 109 (211)
T cd03264 81 FGVYP---NFTVREFLDYIAWL-------KGIPSKEVKA----------------------------------------- 109 (211)
T ss_pred Ccccc---cCCHHHHHHHHHHH-------hCCCHHHHHH-----------------------------------------
Confidence 75442 45888888764422 1110000011
Q ss_pred cccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHH
Q 007480 205 GKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLV 283 (602)
Q Consensus 205 g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I 283 (602)
.++.+++..+. ...++.+.++|++++++..++ .+++ .+|.+ .+.|||+++||+... +.+.+++
T Consensus 110 ------~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la---~al~-~~p~l---lllDEPt~~LD~~~~---~~l~~~l 173 (211)
T cd03264 110 ------RVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIA---QALV-GDPSI---LIVDEPTAGLDPEER---IRFRNLL 173 (211)
T ss_pred ------HHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHH---HHHh-cCCCE---EEEcCCcccCCHHHH---HHHHHHH
Confidence 11222222221 001345678899999998888 4554 67777 799999999999995 4555666
Q ss_pred hhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCC
Q 007480 284 ASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEI 318 (602)
Q Consensus 284 ~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~v 318 (602)
.+..+ + ..-..+++.. ...-+.+.+-.+++|++
T Consensus 174 ~~~~~-~-~tii~vsH~~~~~~~~~d~i~~l~~g~i 207 (211)
T cd03264 174 SELGE-D-RIVILSTHIVEDVESLCNQVAVLNKGKL 207 (211)
T ss_pred HHHhC-C-CEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 55543 2 2233444422 22222333444456654
No 93
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.55 E-value=2.4e-14 Score=145.35 Aligned_cols=198 Identities=17% Similarity=0.214 Sum_probs=124.5
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-----------cc
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-----------ID 114 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-----------~~ 114 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|. .+++.| |++.+.++... ..
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK11264 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLL------------EQPEAGTIRVGDITIDTARSLSQQKGLIRQL 83 (250)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCeEEEECCEEccccccccchhhHHHHh
Confidence 35899999988 89999999999999999999998 478999 99988765421 11
Q ss_pred CcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccc
Q 007480 115 GSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKL 194 (602)
Q Consensus 115 ~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~f 194 (602)
+..+++++++..-+ +..++.|++.++... ..+....
T Consensus 84 ~~~i~~v~q~~~~~---~~~tv~e~l~~~~~~------~~~~~~~----------------------------------- 119 (250)
T PRK11264 84 RQHVGFVFQNFNLF---PHRTVLENIIEGPVI------VKGEPKE----------------------------------- 119 (250)
T ss_pred hhhEEEEecCcccC---CCCCHHHHHHHHHHH------hcCCCHH-----------------------------------
Confidence 34688998886433 346888888764321 0110000
Q ss_pred hhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHH
Q 007480 195 VWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYV 273 (602)
Q Consensus 195 lw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~ 273 (602)
...+.++.+++.++. ...++.+.++|++++++..++ .+++ .+|.+ .+.|||+++||+...
T Consensus 120 ------------~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la---~al~-~~p~l---llLDEPt~~LD~~~~ 180 (250)
T PRK11264 120 ------------EATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIA---RALA-MRPEV---ILFDEPTSALDPELV 180 (250)
T ss_pred ------------HHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHH---HHHh-cCCCE---EEEeCCCccCCHHHH
Confidence 001112222322221 111355678999999998888 4444 67777 889999999999994
Q ss_pred HHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHH
Q 007480 274 KRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVE 326 (602)
Q Consensus 274 e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e 326 (602)
..+.+++.+..+ +...-..+++. ....-+.+.+-.+++|.+-..++..+
T Consensus 181 ---~~l~~~l~~~~~-~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 230 (250)
T PRK11264 181 ---GEVLNTIRQLAQ-EKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKA 230 (250)
T ss_pred ---HHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 566666665532 22223344442 22222344555568887755444433
No 94
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=1.1e-14 Score=151.61 Aligned_cols=198 Identities=21% Similarity=0.211 Sum_probs=130.1
Q ss_pred cccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-------ccCcceE
Q 007480 51 ETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-------IDGSRTS 119 (602)
Q Consensus 51 ~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-------~~~~~~~ 119 (602)
.+|+++++.+ ++++|+|+||||||||+++|+|. .++++| |++.|.++... ..+..++
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig 87 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGL------------LQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVG 87 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcC------------CCCCCcEEEECCEECccccccccHHHHHhhEE
Confidence 5899999999 89999999999999999999998 488999 99999886420 1245789
Q ss_pred EEeeccc-cccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhh
Q 007480 120 VFYLDTE-GFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLI 198 (602)
Q Consensus 120 vvl~Dte-G~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~v 198 (602)
+++|+++ .+. ..++.|++.|+... ++....
T Consensus 88 ~v~q~~~~~l~---~~tv~~~l~~~~~~-------~~~~~~--------------------------------------- 118 (288)
T PRK13643 88 VVFQFPESQLF---EETVLKDVAFGPQN-------FGIPKE--------------------------------------- 118 (288)
T ss_pred EEecCcchhcc---cchHHHHHHhHHHH-------cCCCHH---------------------------------------
Confidence 9999863 222 24888888776532 111110
Q ss_pred hhccCCcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHH
Q 007480 199 QRDFLQGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRR 276 (602)
Q Consensus 199 vRDf~~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~ 276 (602)
+..+.+.++|+.++.. ..++.+..+|++++++..++ .+++ ..|.+ .+.|||+++||+...
T Consensus 119 --------~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA---~aL~-~~p~i---llLDEPt~gLD~~~~--- 180 (288)
T PRK13643 119 --------KAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIA---GILA-MEPEV---LVLDEPTAGLDPKAR--- 180 (288)
T ss_pred --------HHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHH---HHHH-hCCCE---EEEECCccCCCHHHH---
Confidence 0111222333322221 12456678899999999988 4444 66776 789999999999984
Q ss_pred HHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 277 EQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 277 ~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
..+.+.+..+.+ +..+-..+|+. .++..+.+.+-.+++|.+-..++..+.+
T Consensus 181 ~~l~~~l~~l~~-~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 232 (288)
T PRK13643 181 IEMMQLFESIHQ-SGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVF 232 (288)
T ss_pred HHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 455555554432 22333455553 2233344556666889887777766554
No 95
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.55 E-value=2.7e-14 Score=144.17 Aligned_cols=199 Identities=18% Similarity=0.248 Sum_probs=125.1
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-----ccCcceEE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-----IDGSRTSV 120 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-----~~~~~~~v 120 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|. .++++| |++.|.++... ..+..+++
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 81 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL------------EEITSGDLIVDGLKVNDPKVDERLIRQEAGM 81 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEECCcCChhHHHHhhceEE
Confidence 45899999888 89999999999999999999998 478999 99999876421 12356899
Q ss_pred EeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhh
Q 007480 121 FYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQR 200 (602)
Q Consensus 121 vl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvR 200 (602)
++++..-+ +..++.|++.++... ..+.....
T Consensus 82 ~~q~~~~~---~~~tv~~~l~~~~~~------~~~~~~~~---------------------------------------- 112 (240)
T PRK09493 82 VFQQFYLF---PHLTALENVMFGPLR------VRGASKEE---------------------------------------- 112 (240)
T ss_pred EecccccC---CCCcHHHHHHhHHHH------hcCCCHHH----------------------------------------
Confidence 99886433 256888888764311 01100000
Q ss_pred ccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHH
Q 007480 201 DFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQL 279 (602)
Q Consensus 201 Df~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L 279 (602)
..+.+.++++..+. ...++.+.++|++++++..++ .+++ .+|.+ .+.|||+++||+... ..+
T Consensus 113 -------~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la---~al~-~~p~l---lllDEP~~~LD~~~~---~~l 175 (240)
T PRK09493 113 -------AEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIA---RALA-VKPKL---MLFDEPTSALDPELR---HEV 175 (240)
T ss_pred -------HHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHH---HHHh-cCCCE---EEEcCCcccCCHHHH---HHH
Confidence 01112222222221 111345678899999998888 4544 67777 789999999999994 456
Q ss_pred HHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 280 KKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 280 ~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
.+++.+..+. ...-..+++. .....+.+.+-.+++|.+-..++..+.
T Consensus 176 ~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 176 LKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred HHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 6666554321 2222344442 222223445555688877554544443
No 96
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.55 E-value=5.1e-15 Score=143.53 Aligned_cols=210 Identities=21% Similarity=0.264 Sum_probs=137.0
Q ss_pred ccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc---cCcceEE
Q 007480 48 EGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI---DGSRTSV 120 (602)
Q Consensus 48 eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~---~~~~~~v 120 (602)
....+|++++..+ .+.+++||||+||||||.++.++ .+.++| |++.|..+.... ..++.++
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL------------~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRL------------LKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHh------------ccccCceEEEeeeecccCChHHHHHHHHH
Confidence 4456889998877 89999999999999999999998 488999 999987664310 0111222
Q ss_pred EeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhh
Q 007480 121 FYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQR 200 (602)
Q Consensus 121 vl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvR 200 (602)
+-|+.. +.. +.||+|-+.| + -+|.
T Consensus 80 LkQ~N~-i~~--rlTV~dLv~F-------------------------------------G--------RfPY-------- 103 (252)
T COG4604 80 LKQENH-INS--RLTVRDLVGF-------------------------------------G--------RFPY-------- 103 (252)
T ss_pred HHhhch-hhh--eeEHHHHhhc-------------------------------------C--------CCcc--------
Confidence 222110 000 1122221111 1 1343
Q ss_pred ccCCcc---cHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHH
Q 007480 201 DFLQGK---SVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRR 276 (602)
Q Consensus 201 Df~~g~---t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~ 276 (602)
+.|+ +..+.+++|++-... +..++.+.++|++++|+.-++ .+++ .... ..|+|||.+.||....-++
T Consensus 104 --SqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIA---MVla-QdTd---yvlLDEPLNNLDmkHsv~i 174 (252)
T COG4604 104 --SQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIA---MVLA-QDTD---YVLLDEPLNNLDMKHSVQI 174 (252)
T ss_pred --cCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhh---eeee-ccCc---EEEecCcccccchHHHHHH
Confidence 2453 345667888877665 445788999999999976555 2222 2222 3688999999998875444
Q ss_pred HHH-HHHHhhhcCCCccceEeeccHHHHHHHHHHHHHHcCCCCCCCcchHHHHhHHHHHHHH
Q 007480 277 EQL-KKLVASVTRPKIVQGKFLNGNEFVAFMEQILEALNKGEIPSTGSLVEVFNKGILERCL 337 (602)
Q Consensus 277 ~~L-~~~I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aINsG~vP~~~sl~e~~n~~av~~a~ 337 (602)
-++ ++...++ .|++ ...++...|++-..+++-|+++|++...++..+++....+++.+
T Consensus 175 Mk~Lrrla~el--~Kti-viVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~~L~eiy 233 (252)
T COG4604 175 MKILRRLADEL--GKTI-VVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEILSEIY 233 (252)
T ss_pred HHHHHHHHHHh--CCeE-EEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHHHHHHHh
Confidence 333 3333333 1332 34677788998888899999999999999999998887776653
No 97
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.55 E-value=1.1e-14 Score=144.22 Aligned_cols=174 Identities=22% Similarity=0.289 Sum_probs=112.4
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeecc
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLDT 125 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~Dt 125 (602)
..+|+++++.+ ++++|+||||||||||+++|+|. .++++| |++.+.++. ..+..++++++|.
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~------------~~p~~G~i~~~g~~~~--~~~~~i~~v~q~~ 77 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGL------------LKPTSGSIRVFGKPLE--KERKRIGYVPQRR 77 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC------------CCCCCCEEEECCccHH--HHHhheEEecccc
Confidence 45899999888 89999999999999999999998 478999 999887653 1235689999986
Q ss_pred ccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCc
Q 007480 126 EGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQG 205 (602)
Q Consensus 126 eG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g 205 (602)
...... ..++.||+.++..... ..++....
T Consensus 78 ~~~~~~-~~tv~e~l~~~~~~~~---~~~~~~~~---------------------------------------------- 107 (213)
T cd03235 78 SIDRDF-PISVRDVVLMGLYGHK---GLFRRLSK---------------------------------------------- 107 (213)
T ss_pred ccccCC-CCcHHHHHHhcccccc---ccccCCCH----------------------------------------------
Confidence 432211 3588888776432100 00000000
Q ss_pred ccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHh
Q 007480 206 KSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVA 284 (602)
Q Consensus 206 ~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~ 284 (602)
...+.++++++.++. ...++.+.++|++++++..++ .+++ .+|.+ .+.|||+++||+.. ...+.+.+.
T Consensus 108 -~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la---~al~-~~p~l---lllDEPt~~LD~~~---~~~l~~~l~ 176 (213)
T cd03235 108 -ADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLA---RALV-QDPDL---LLLDEPFAGVDPKT---QEDIYELLR 176 (213)
T ss_pred -HHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHH---HHHH-cCCCE---EEEeCCcccCCHHH---HHHHHHHHH
Confidence 011222333333222 111345678999999999888 4444 67777 89999999999999 456666666
Q ss_pred hhcCCCccceEeecc
Q 007480 285 SVTRPKIVQGKFLNG 299 (602)
Q Consensus 285 ~~~~pK~l~g~~ltG 299 (602)
+..+ +...-..+++
T Consensus 177 ~~~~-~~~tvi~~sH 190 (213)
T cd03235 177 ELRR-EGMTILVVTH 190 (213)
T ss_pred HHHh-cCCEEEEEeC
Confidence 6543 2223344555
No 98
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=1e-14 Score=151.66 Aligned_cols=200 Identities=18% Similarity=0.193 Sum_probs=132.4
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-------ccCcce
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-------IDGSRT 118 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-------~~~~~~ 118 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|. .+++.| |++.|.++... ..+..+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl------------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i 87 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL------------LKPTTGTVTVDDITITHKTKDKYIRPVRKRI 87 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCcEEEECCEECccccccchHHHHHhhe
Confidence 45899999998 89999999999999999999998 488999 99999876421 124578
Q ss_pred EEEeecccc-ccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhh
Q 007480 119 SVFYLDTEG-FESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWL 197 (602)
Q Consensus 119 ~vvl~DteG-~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~ 197 (602)
++++|+++. +. ..++.|++.|+... .+...
T Consensus 88 g~v~q~~~~~l~---~~tv~e~i~~~~~~-------~~~~~--------------------------------------- 118 (286)
T PRK13646 88 GMVFQFPESQLF---EDTVEREIIFGPKN-------FKMNL--------------------------------------- 118 (286)
T ss_pred EEEecChHhccc---hhhHHHHHHhhHHH-------cCCCH---------------------------------------
Confidence 999998642 22 23778888765321 01000
Q ss_pred hhhccCCcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHH
Q 007480 198 IQRDFLQGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKR 275 (602)
Q Consensus 198 vvRDf~~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~ 275 (602)
....+.++++|+.++.. ..++.+.++|++++++..++ .+++ ..|.+ .+.|||+++||+...+
T Consensus 119 --------~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~la---raL~-~~p~i---lllDEPt~~LD~~~~~- 182 (286)
T PRK13646 119 --------DEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIV---SILA-MNPDI---IVLDEPTAGLDPQSKR- 182 (286)
T ss_pred --------HHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH---HHHH-hCCCE---EEEECCcccCCHHHHH-
Confidence 01122233444444331 12456788999999999888 4554 67777 7899999999999954
Q ss_pred HHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 276 REQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 276 ~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
.+.+.+.++.+....+-..+|+. ..+..+.+.+-.+++|.+-..++..+..
T Consensus 183 --~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 183 --QVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred --HHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 55555555432223333455553 2333344566667889887666655544
No 99
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.54 E-value=2.1e-14 Score=144.05 Aligned_cols=196 Identities=14% Similarity=0.162 Sum_probs=122.5
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc----cCcceEEE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI----DGSRTSVF 121 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~----~~~~~~vv 121 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|. .+++.| |++.+.++.... .+..++++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGL------------LPVKSGSIRLDGEDITKLPPHERARAGIAYV 80 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCCEEEECCEECCCCCHHHHHHhCeEEe
Confidence 35899999888 99999999999999999999998 478999 999987764211 13468899
Q ss_pred eeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhc
Q 007480 122 YLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRD 201 (602)
Q Consensus 122 l~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRD 201 (602)
+++...+ +..++.|++.++... +... .++....+...++
T Consensus 81 ~q~~~~~---~~~tv~~~l~~~~~~-------~~~~---~~~~~~~~l~~~~---------------------------- 119 (230)
T TIGR03410 81 PQGREIF---PRLTVEENLLTGLAA-------LPRR---SRKIPDEIYELFP---------------------------- 119 (230)
T ss_pred ccCCccc---CCCcHHHHHHHHHHh-------cCcc---hHHHHHHHHHHHH----------------------------
Confidence 8886433 355888887765422 1100 0000011100000
Q ss_pred cCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHH
Q 007480 202 FLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKK 281 (602)
Q Consensus 202 f~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~ 281 (602)
.+. ...++.+.++|+++++...++ .+++ .+|.+ .+.|||+++||+... ..+.+
T Consensus 120 ---------~l~--------~~~~~~~~~LS~G~~qrv~la---~al~-~~p~i---lllDEPt~~LD~~~~---~~l~~ 172 (230)
T TIGR03410 120 ---------VLK--------EMLGRRGGDLSGGQQQQLAIA---RALV-TRPKL---LLLDEPTEGIQPSII---KDIGR 172 (230)
T ss_pred ---------hHH--------HHhhCChhhCCHHHHHHHHHH---HHHh-cCCCE---EEecCCcccCCHHHH---HHHHH
Confidence 000 011355778899999988887 4444 67777 789999999999994 45666
Q ss_pred HHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchH
Q 007480 282 LVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLV 325 (602)
Q Consensus 282 ~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~ 325 (602)
.+.+..+.....-..+++.. ...-+.+.+-.+++|.+-..++..
T Consensus 173 ~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~ 217 (230)
T TIGR03410 173 VIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGD 217 (230)
T ss_pred HHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 66655432222223444432 222233455555778775544443
No 100
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.54 E-value=2.2e-14 Score=145.94 Aligned_cols=218 Identities=17% Similarity=0.231 Sum_probs=131.7
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccC--CCcc-eEEc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDT--KTKG-IWVW 105 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~--~TkG-Iwi~ 105 (602)
|++..++.+.++ . ...+|+++++.+ ++++|+|+||||||||+++|+|+.. ..+ ++.| |++.
T Consensus 5 ~~l~~~~l~~~~--~--~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---------~~~~~~~~G~i~~~ 71 (253)
T PRK14242 5 PKMEARGLSFFY--G--DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMND---------LIPGARVEGEILLD 71 (253)
T ss_pred cEEEEeeeEEEE--C--CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcc---------cCCCCCCceEEEEC
Confidence 456666544333 2 235899999988 8999999999999999999999720 002 5789 9999
Q ss_pred CcccCcc-----ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccc-hhhhHHHHHHHHHHHhhhhhhh
Q 007480 106 GNPVEME-----IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLP-ETIREADISRLSFAVELAEEFY 179 (602)
Q Consensus 106 ~~~~~~~-----~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~-~~i~e~~l~~L~~~~~L~~~i~ 179 (602)
++++... ..+..+++++++...+ + .++.||+.+.+.. ++.. ....++.+..+...+++.+.
T Consensus 72 g~~i~~~~~~~~~~~~~i~~v~q~~~~~---~-~tv~enl~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~~-- 138 (253)
T PRK14242 72 GENIYDPHVDVVELRRRVGMVFQKPNPF---P-KSIFENVAYGLRV-------NGVKDKAYLAERVERSLRHAALWDE-- 138 (253)
T ss_pred CEEccccccCHHHHhhcEEEEecCCCCC---c-CcHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHHcCCchh--
Confidence 9776421 1135689999986443 2 3888998776432 1110 01111222222221111000
Q ss_pred cccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcc
Q 007480 180 GRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTK 259 (602)
Q Consensus 180 ~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~ 259 (602)
+...+ ++.+.++|++++++..++ .+++ ..|.+ .
T Consensus 139 --------------------------------~~~~~--------~~~~~~LSgGq~qrv~la---ral~-~~p~l---l 171 (253)
T PRK14242 139 --------------------------------VKDRL--------HESALGLSGGQQQRLCIA---RALA-VEPEV---L 171 (253)
T ss_pred --------------------------------hhHHh--------hCCcccCCHHHHHHHHHH---HHHh-cCCCE---E
Confidence 00011 345678899999999888 4444 67777 8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 260 LCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 260 L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
+.|||+++||+.. ...+.+.+.+..+ ...-..+++.. ...-+.+.+-.+++|.+-..++..+.
T Consensus 172 llDEPt~~LD~~~---~~~l~~~l~~~~~--~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 172 LMDEPASALDPIA---TQKIEELIHELKA--RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred EEeCCcccCCHHH---HHHHHHHHHHHhc--CCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999998 4566666665532 22223444422 22233455556688887655554444
No 101
>PRK10908 cell division protein FtsE; Provisional
Probab=99.54 E-value=2.3e-14 Score=143.02 Aligned_cols=189 Identities=18% Similarity=0.207 Sum_probs=118.0
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc------cCcceE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI------DGSRTS 119 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~------~~~~~~ 119 (602)
..+|+++++.+ ++++|+||||||||||+++|+|. .+++.| |++.+.++.... .+..++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~ 82 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGI------------ERPSAGKIWFSGHDITRLKNREVPFLRRQIG 82 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEEcccCChhHHHHHHhheE
Confidence 45899999888 99999999999999999999998 488999 999987664210 135689
Q ss_pred EEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhh
Q 007480 120 VFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQ 199 (602)
Q Consensus 120 vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vv 199 (602)
+++++..-+ +..++.|++.+.... ++.......+
T Consensus 83 ~~~q~~~~~---~~~tv~~~l~~~~~~-------~~~~~~~~~~------------------------------------ 116 (222)
T PRK10908 83 MIFQDHHLL---MDRTVYDNVAIPLII-------AGASGDDIRR------------------------------------ 116 (222)
T ss_pred EEecCcccc---ccccHHHHHHhHHHh-------cCCCHHHHHH------------------------------------
Confidence 999986433 246888888764321 1110000001
Q ss_pred hccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHH
Q 007480 200 RDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQ 278 (602)
Q Consensus 200 RDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~ 278 (602)
.++++++..+. +..++.+.++|++++++..++ .++. .+|.+ .+.|||++.||+... +.
T Consensus 117 -----------~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la---ral~-~~p~l---lllDEPt~~LD~~~~---~~ 175 (222)
T PRK10908 117 -----------RVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIA---RAVV-NKPAV---LLADEPTGNLDDALS---EG 175 (222)
T ss_pred -----------HHHHHHHHcCChhhhhCCchhCCHHHHHHHHHH---HHHH-cCCCE---EEEeCCCCcCCHHHH---HH
Confidence 11122222211 111345678899999998888 4443 67777 899999999999984 45
Q ss_pred HHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCC
Q 007480 279 LKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEI 318 (602)
Q Consensus 279 L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~v 318 (602)
+.+.+.+..+ +...-..+++. .+...+.+.+-.+++|.+
T Consensus 176 l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 215 (222)
T PRK10908 176 ILRLFEEFNR-VGVTVLMATHDIGLISRRSYRMLTLSDGHL 215 (222)
T ss_pred HHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 5555555432 22222344442 222222333444566654
No 102
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=4.7e-14 Score=143.59 Aligned_cols=228 Identities=16% Similarity=0.235 Sum_probs=136.4
Q ss_pred EEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcc
Q 007480 33 IVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNP 108 (602)
Q Consensus 33 lv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~ 108 (602)
++.+++.+.++ ....+|+++++.+ ++++|+|+||||||||+++|+|. .++++| |++.+.+
T Consensus 5 ~l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~~ 68 (255)
T PRK11300 5 LLSVSGLMMRF----GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF------------YKPTGGTILLRGQH 68 (255)
T ss_pred eEEEeeEEEEE----CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC------------cCCCcceEEECCEE
Confidence 45555543322 2346899999888 99999999999999999999998 488999 9999987
Q ss_pred cCccc----cCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCC
Q 007480 109 VEMEI----DGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKG 184 (602)
Q Consensus 109 ~~~~~----~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~ 184 (602)
+.... .+..+++++++...+ +..++.||+.++..... ... + ..+ +
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~---~~~tv~enl~~~~~~~~--------~~~--------~--~~~----~------ 117 (255)
T PRK11300 69 IEGLPGHQIARMGVVRTFQHVRLF---REMTVIENLLVAQHQQL--------KTG--------L--FSG----L------ 117 (255)
T ss_pred CCCCCHHHHHhcCeEEeccCcccC---CCCcHHHHHHHhhhccc--------cch--------h--hhh----h------
Confidence 64311 123467788886543 35688999877532100 000 0 000 0
Q ss_pred cccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCC
Q 007480 185 QDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDM 263 (602)
Q Consensus 185 e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~ 263 (602)
+.+.. + ++ ......+..+.+++.++. ...++.+.++|+++++...++ .++ +.+|.+ .+.||
T Consensus 118 ----~~~~~--~---~~--~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la---~al-~~~p~l---lllDE 179 (255)
T PRK11300 118 ----LKTPA--F---RR--AESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIA---RCM-VTQPEI---LMLDE 179 (255)
T ss_pred ----ccccc--c---cc--chhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHH---HHH-hcCCCE---EEEcC
Confidence 00000 0 00 000112233344444332 122566788999999999888 344 477887 89999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 264 KDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 264 p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
|+++||+.. +..+.+.+.+..+.....-..+++. ....-+.+.+-.+++|.+-..++..+..
T Consensus 180 Pt~~LD~~~---~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 180 PAAGLNPKE---TKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIR 242 (255)
T ss_pred CccCCCHHH---HHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHHh
Confidence 999999999 4566666665543212233344442 2222334555566888876655554443
No 103
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=2.4e-14 Score=147.54 Aligned_cols=214 Identities=16% Similarity=0.242 Sum_probs=131.6
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGN 107 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~ 107 (602)
+++..++.+ +.+......+|+++++.+ ++++|+||||||||||+++|+|. .+++.| |++.+.
T Consensus 6 ~~l~~~nl~--~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~p~~G~I~~~g~ 71 (271)
T PRK13632 6 VMIKVENVS--FSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGL------------LKPQSGEIKIDGI 71 (271)
T ss_pred eEEEEEeEE--EEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCceEEECCE
Confidence 456665443 233222345899999988 89999999999999999999998 478999 999998
Q ss_pred ccCcc---ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCC
Q 007480 108 PVEME---IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKG 184 (602)
Q Consensus 108 ~~~~~---~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~ 184 (602)
++... ..+..++++++|+... +...|+.||+.+.... ........
T Consensus 72 ~i~~~~~~~~~~~i~~v~q~~~~~--~~~~tv~enl~~~~~~-------~~~~~~~~----------------------- 119 (271)
T PRK13632 72 TISKENLKEIRKKIGIIFQNPDNQ--FIGATVEDDIAFGLEN-------KKVPPKKM----------------------- 119 (271)
T ss_pred ecCcCCHHHHhcceEEEEeCHHHh--cCcccHHHHHHhHHHH-------cCCCHHHH-----------------------
Confidence 76421 1245689999986422 1245888888765321 11100000
Q ss_pred cccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCC
Q 007480 185 QDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDM 263 (602)
Q Consensus 185 e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~ 263 (602)
.+.++++++..+. +..++.+.++|++++++..++ .+++ .+|.+ .+.||
T Consensus 120 ------------------------~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la---ral~-~~p~l---llLDE 168 (271)
T PRK13632 120 ------------------------KDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIA---SVLA-LNPEI---IIFDE 168 (271)
T ss_pred ------------------------HHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHH---HHHH-cCCCE---EEEeC
Confidence 1112222222221 111345678899999988887 4544 66776 78999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHH
Q 007480 264 KDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVE 326 (602)
Q Consensus 264 p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e 326 (602)
|+++||+.. ...+.+.+.+..+.....-..+++.. ... ..+.+-.+++|.+-..++..+
T Consensus 169 P~~gLD~~~---~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~ 228 (271)
T PRK13632 169 STSMLDPKG---KREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKE 228 (271)
T ss_pred CcccCCHHH---HHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHH
Confidence 999999998 45666666655322112223444432 222 344555567887755444433
No 104
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.54 E-value=2.1e-14 Score=143.37 Aligned_cols=192 Identities=17% Similarity=0.170 Sum_probs=118.7
Q ss_pred cccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc------ccCcceEE
Q 007480 51 ETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME------IDGSRTSV 120 (602)
Q Consensus 51 ~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~------~~~~~~~v 120 (602)
.+|+++++.+ ++++|+|||||||||||++|+|. .+++.| |++.+.++... ..+..+++
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 86 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGL------------LKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQM 86 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCEEccccchhhHHHhhccEEE
Confidence 5899999888 89999999999999999999998 488999 99998876421 12356899
Q ss_pred Eeeccc-cccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhh
Q 007480 121 FYLDTE-GFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQ 199 (602)
Q Consensus 121 vl~Dte-G~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vv 199 (602)
+++++. .+ .+..++.||+.+.+.. +... ..+.....
T Consensus 87 ~~q~~~~~~--~~~~tv~~nl~~~~~~-------~~~~--~~~~~~~~-------------------------------- 123 (228)
T cd03257 87 VFQDPMSSL--NPRMTIGEQIAEPLRI-------HGKL--SKKEARKE-------------------------------- 123 (228)
T ss_pred EecCchhhc--CCcCCHHHHHHHHHHh-------ccCC--cHHHHHHH--------------------------------
Confidence 998863 12 2356888888765422 1100 00000000
Q ss_pred hccCCcccHHHHHHHHHHhCCC--CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHH
Q 007480 200 RDFLQGKSVQEMVHDALQRVPN--DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRRE 277 (602)
Q Consensus 200 RDf~~g~t~~eyLe~aL~~~~~--~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~ 277 (602)
..++.++..+. ...++.+.++|+++++...++ ++++ .+|.+ .+.|||+++||+.. .+
T Consensus 124 -----------~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la---ral~-~~p~l---llLDEPt~~LD~~~---~~ 182 (228)
T cd03257 124 -----------AVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIA---RALA-LNPKL---LIADEPTSALDVSV---QA 182 (228)
T ss_pred -----------HHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHH---HHHh-cCCCE---EEecCCCCCCCHHH---HH
Confidence 00112222211 011345678899999998888 4444 67777 79999999999998 45
Q ss_pred HHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCC
Q 007480 278 QLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEI 318 (602)
Q Consensus 278 ~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~v 318 (602)
.+.+.+.+..+.....-..+++.. ....+.+.+-.+++|.+
T Consensus 183 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 224 (228)
T cd03257 183 QILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224 (228)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEE
Confidence 666666655432122223444422 22223344444466654
No 105
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.54 E-value=1.4e-14 Score=145.04 Aligned_cols=193 Identities=20% Similarity=0.259 Sum_probs=118.3
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-----ccCcceEE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-----IDGSRTSV 120 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-----~~~~~~~v 120 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|.. .++ ..++++| |.+.+.++... ..+..+++
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~--~~~-----~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 85 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN--DLI-----PGAPDEGEVLLDGKDIYDLDVDVLELRRRVGM 85 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc--ccc-----cCCCCCeEEEECCEEhhhcchHHHHHHhhEEE
Confidence 45899999888 899999999999999999999981 000 0167899 99998875421 12356899
Q ss_pred EeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhh
Q 007480 121 FYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQR 200 (602)
Q Consensus 121 vl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvR 200 (602)
++++...+ ..|+.||+.++... +..... .
T Consensus 86 ~~q~~~~~----~~tv~e~l~~~~~~-------~~~~~~-~--------------------------------------- 114 (227)
T cd03260 86 VFQKPNPF----PGSIYDNVAYGLRL-------HGIKLK-E--------------------------------------- 114 (227)
T ss_pred EecCchhc----cccHHHHHHhHHHh-------cCCCcH-H---------------------------------------
Confidence 99986533 35888888765422 110000 0
Q ss_pred ccCCcccHHHHHHHHHHhCCCCC-CCCC--chhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHH
Q 007480 201 DFLQGKSVQEMVHDALQRVPNDK-GDKN--IDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRRE 277 (602)
Q Consensus 201 Df~~g~t~~eyLe~aL~~~~~~~-~~~~--i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~ 277 (602)
..++.++++++.++... .++. +.++|++++++..++ .+++ .+|.+ .+.|||++.||+.. ..
T Consensus 115 ------~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la---~al~-~~p~l---lllDEPt~~LD~~~---~~ 178 (227)
T cd03260 115 ------ELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLA---RALA-NEPEV---LLLDEPTSALDPIS---TA 178 (227)
T ss_pred ------HHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCCccCCHHH---HH
Confidence 00111222222222110 0122 467899999999888 4544 66777 78999999999999 45
Q ss_pred HHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCC
Q 007480 278 QLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEI 318 (602)
Q Consensus 278 ~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~v 318 (602)
.+.+.+.+..+. ..-..+++.. ...-+.+.+-.+++|.+
T Consensus 179 ~l~~~l~~~~~~--~tii~~sH~~~~~~~~~d~i~~l~~G~i 218 (227)
T cd03260 179 KIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLNGRL 218 (227)
T ss_pred HHHHHHHHHhhC--cEEEEEeccHHHHHHhCCEEEEEeCCEE
Confidence 666666665432 2233444422 22223344445567765
No 106
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=2.9e-14 Score=145.24 Aligned_cols=223 Identities=17% Similarity=0.207 Sum_probs=133.6
Q ss_pred cccEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEc
Q 007480 30 AFPIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVW 105 (602)
Q Consensus 30 ~iplv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~ 105 (602)
+-+++.+++.+..+ . ...+|+++++.+ ++++|+|+||||||||+++|+|... ++...+++| |++.
T Consensus 4 ~~~~l~~~~l~~~~--~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-------~~~~~~~~G~i~~~ 72 (254)
T PRK14273 4 NEAIIETENLNLFY--T--DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMND-------LVEGIKIEGNVIYE 72 (254)
T ss_pred CCceEEEeeeEEEe--C--CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc-------CCcCCCCceEEEEC
Confidence 33466776544333 2 245899999988 8999999999999999999999840 000013689 9999
Q ss_pred CcccCcc-----ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccch-hhhHHHHHHHHHHHhhhhhhh
Q 007480 106 GNPVEME-----IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPE-TIREADISRLSFAVELAEEFY 179 (602)
Q Consensus 106 ~~~~~~~-----~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~-~i~e~~l~~L~~~~~L~~~i~ 179 (602)
+.++... ..+..+++++||...+ ..++.||+.+.... ++... ...++.+..+...+++.+
T Consensus 73 g~~i~~~~~~~~~~~~~i~~v~q~~~~~----~~tv~eni~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~--- 138 (254)
T PRK14273 73 GKNIYSNNFDILELRRKIGMVFQTPNPF----LMSIYDNISYGPKI-------HGTKDKKKLDEIVEQSLKKSALWN--- 138 (254)
T ss_pred CEecccccccHHHHhhceEEEeeccccc----cCcHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHHhCCch---
Confidence 8775311 1245689999986543 25899998775432 11100 001111222211111100
Q ss_pred cccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcc
Q 007480 180 GRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTK 259 (602)
Q Consensus 180 ~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~ 259 (602)
.+...+ ++.+.++|++++++..++ .+++ ..|.+ .
T Consensus 139 -------------------------------~l~~~~--------~~~~~~LSgG~~qrv~la---ral~-~~p~l---l 172 (254)
T PRK14273 139 -------------------------------EVKDKL--------NTNALSLSGGQQQRLCIA---RTLA-IEPNV---I 172 (254)
T ss_pred -------------------------------hhHHHH--------hCCcccCCHHHHHHHHHH---HHHH-cCCCE---E
Confidence 000111 345678999999999888 4444 67777 8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 260 LCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 260 L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
+.|||+++||+... ..+.+.+.+..+ ...-..+++.. .+..+.+.+-.+++|.+-..++..+..
T Consensus 173 lLDEPt~~LD~~~~---~~l~~~l~~~~~--~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 173 LMDEPTSALDPIST---GKIEELIINLKE--SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEeCCCcccCHHHH---HHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 89999999999994 456666665532 22223444422 222333445556888886666655543
No 107
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=2.4e-14 Score=160.06 Aligned_cols=211 Identities=11% Similarity=0.126 Sum_probs=136.0
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCC--Ccc-eEEc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTK--TKG-IWVW 105 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~--TkG-Iwi~ 105 (602)
|++.+++.+.++ + ...+|+++++.+ ++++|+||||||||||+++|+|.. ++ ++| |++.
T Consensus 4 ~~l~~~nl~~~~--~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~~~G~i~~~ 67 (506)
T PRK13549 4 YLLEMKNITKTF--G--GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY------------PHGTYEGEIIFE 67 (506)
T ss_pred ceEEEeeeEEEe--C--CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC------------CCCCCCeEEEEC
Confidence 466776554333 2 346899999988 899999999999999999999983 43 899 9999
Q ss_pred CcccCccc----cCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcc
Q 007480 106 GNPVEMEI----DGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGR 181 (602)
Q Consensus 106 ~~~~~~~~----~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~ 181 (602)
|.++.... .+..+++++|+...+ +..++.|++.+++.. +.. +..+
T Consensus 68 g~~~~~~~~~~~~~~~i~~v~q~~~~~---~~~tv~e~l~~~~~~-------~~~-~~~~-------------------- 116 (506)
T PRK13549 68 GEELQASNIRDTERAGIAIIHQELALV---KELSVLENIFLGNEI-------TPG-GIMD-------------------- 116 (506)
T ss_pred CEECCCCCHHHHHHCCeEEEEeccccC---CCCcHHHHhhhcccc-------ccc-CCcC--------------------
Confidence 98764311 135689999987533 356888988764321 000 0000
Q ss_pred cCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhccc
Q 007480 182 VKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKL 260 (602)
Q Consensus 182 ~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L 260 (602)
.....+.++++|+.++. ...++.+.++|++++++..++ .++ +..|.+ .+
T Consensus 117 -----------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la---~al-~~~p~l---ll 166 (506)
T PRK13549 117 -----------------------YDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIA---KAL-NKQARL---LI 166 (506)
T ss_pred -----------------------HHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHH---HHH-hcCCCE---EE
Confidence 00112223444444443 223567789999999999998 444 477887 89
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcc
Q 007480 261 CDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGS 323 (602)
Q Consensus 261 ~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~s 323 (602)
.|||++.||+... ..+.+.+.+..+ +...-..+|+. ..+..+.+.+-.+++|.+-..++
T Consensus 167 LDEPt~~LD~~~~---~~l~~~l~~l~~-~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 226 (506)
T PRK13549 167 LDEPTASLTESET---AVLLDIIRDLKA-HGIACIYISHKLNEVKAISDTICVIRDGRHIGTRP 226 (506)
T ss_pred EeCCCCCCCHHHH---HHHHHHHHHHHH-CCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecc
Confidence 9999999999994 456666655532 22233455553 23333445555668887644433
No 108
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.54 E-value=3.1e-14 Score=140.87 Aligned_cols=160 Identities=19% Similarity=0.283 Sum_probs=107.4
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-----ccCcceEE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-----IDGSRTSV 120 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-----~~~~~~~v 120 (602)
..+|+++++.+ ++++|+||||||||||+++|+|. .+++.| |++.+.++... .....+++
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL------------EEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 45899999888 89999999999999999999998 478999 99998876321 12356899
Q ss_pred EeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhh
Q 007480 121 FYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQR 200 (602)
Q Consensus 121 vl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvR 200 (602)
+++|...+ +..++.|++.++... .++......
T Consensus 81 ~~q~~~~~---~~~t~~e~l~~~~~~------~~~~~~~~~--------------------------------------- 112 (213)
T cd03262 81 VFQQFNLF---PHLTVLENITLAPIK------VKGMSKAEA--------------------------------------- 112 (213)
T ss_pred EecccccC---CCCcHHHHHHhHHHH------hcCCCHHHH---------------------------------------
Confidence 99987543 246888887765321 011100000
Q ss_pred ccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHH
Q 007480 201 DFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQL 279 (602)
Q Consensus 201 Df~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L 279 (602)
.+.++++++..+. ...++.+.++|+++++...++ .++. .+|.+ .+.|||+++||+... +.+
T Consensus 113 --------~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la---~al~-~~p~l---lllDEP~~~LD~~~~---~~l 174 (213)
T cd03262 113 --------EERALELLEKVGLADKADAYPAQLSGGQQQRVAIA---RALA-MNPKV---MLFDEPTSALDPELV---GEV 174 (213)
T ss_pred --------HHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHH---HHHh-cCCCE---EEEeCCccCCCHHHH---HHH
Confidence 1111222222211 011345678899999988887 4554 56777 789999999999984 456
Q ss_pred HHHHhhhc
Q 007480 280 KKLVASVT 287 (602)
Q Consensus 280 ~~~I~~~~ 287 (602)
.+.+.+..
T Consensus 175 ~~~l~~~~ 182 (213)
T cd03262 175 LDVMKDLA 182 (213)
T ss_pred HHHHHHHH
Confidence 66665553
No 109
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.53 E-value=2.5e-14 Score=148.56 Aligned_cols=216 Identities=21% Similarity=0.299 Sum_probs=135.9
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGN 107 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~ 107 (602)
+++..++.+.++ . ....+|+++++.+ ++++|+|+||||||||+++|+|. .++++| |.+.|.
T Consensus 4 ~~l~~~~l~~~~--~-~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl------------~~p~~G~i~i~g~ 68 (283)
T PRK13636 4 YILKVEELNYNY--S-DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGI------------LKPSSGRILFDGK 68 (283)
T ss_pred ceEEEEeEEEEe--C-CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCccEEEECCE
Confidence 356666543333 2 2345899999988 89999999999999999999998 488999 999998
Q ss_pred ccCcc-----ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhccc
Q 007480 108 PVEME-----IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRV 182 (602)
Q Consensus 108 ~~~~~-----~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~ 182 (602)
++... ..+..++++++|+.... ...++.|++.+.... +.....
T Consensus 69 ~~~~~~~~~~~~~~~ig~v~q~~~~~~--~~~tv~e~l~~~~~~-------~~~~~~----------------------- 116 (283)
T PRK13636 69 PIDYSRKGLMKLRESVGMVFQDPDNQL--FSASVYQDVSFGAVN-------LKLPED----------------------- 116 (283)
T ss_pred ECCCCcchHHHHHhhEEEEecCcchhh--ccccHHHHHHhHHHH-------cCCCHH-----------------------
Confidence 76321 12356899999874321 135788887764321 111100
Q ss_pred CCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccC
Q 007480 183 KGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLC 261 (602)
Q Consensus 183 ~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~ 261 (602)
+..+.++.+++.++. ...++.+.++|+++++...++ .+++ .+|.+ .+.
T Consensus 117 ------------------------~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~la---raL~-~~p~l---Lil 165 (283)
T PRK13636 117 ------------------------EVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIA---GVLV-MEPKV---LVL 165 (283)
T ss_pred ------------------------HHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHH---HHHH-cCCCE---EEE
Confidence 111222333333332 112456778999999998888 4554 67777 789
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 262 DMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 262 d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
|||+++||+... ..+.+.+.+..+.....-..+++. .....+.+.+-.+++|.+...++..+..
T Consensus 166 DEPt~gLD~~~~---~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 166 DEPTAGLDPMGV---SEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred eCCccCCCHHHH---HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999994 455566655533222222344442 2222234455556889887766655544
No 110
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.53 E-value=2.6e-14 Score=145.04 Aligned_cols=201 Identities=18% Similarity=0.237 Sum_probs=126.1
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCC-----cc-eEEcCcccCcc-----ccC
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKT-----KG-IWVWGNPVEME-----IDG 115 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~T-----kG-Iwi~~~~~~~~-----~~~ 115 (602)
..+++++++.+ ++++|+|+|||||||||++|+|. .+++ +| |++.|.++... ..+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 81 (247)
T TIGR00972 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRM------------NDLVPGVRIEGKVLFDGQDIYDKKIDVVELR 81 (247)
T ss_pred eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhcc------------CCCCcCCCCceEEEECCEEccccccchHHHH
Confidence 35899999888 89999999999999999999998 3666 89 99999876421 123
Q ss_pred cceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhccc-chhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccc
Q 007480 116 SRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNL-PETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKL 194 (602)
Q Consensus 116 ~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~-~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~f 194 (602)
..+++++++...+ + .++.||+.+.... ... ......+.+..+...+++.+.+
T Consensus 82 ~~i~~v~q~~~~~---~-~tv~e~l~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~~~---------------- 134 (247)
T TIGR00972 82 RRVGMVFQKPNPF---P-MSIYDNIAYGPRL-------HGIKDKKELDEIVEESLKKAALWDEV---------------- 134 (247)
T ss_pred hheEEEecCcccC---C-CCHHHHHHhHHHh-------cCCCCHHHHHHHHHHHHHHcCCCcch----------------
Confidence 5689999886433 3 6888988765422 110 0011111222222222221000
Q ss_pred hhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHH
Q 007480 195 VWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVK 274 (602)
Q Consensus 195 lw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e 274 (602)
+. ..++.+.++|++++++..++ .+++ ..|.+ .+.|||+++||+...
T Consensus 135 ------------------~~--------~~~~~~~~LSgG~~qrv~la---ral~-~~p~l---lllDEPt~~LD~~~~- 180 (247)
T TIGR00972 135 ------------------KD--------RLHDSALGLSGGQQQRLCIA---RALA-VEPEV---LLLDEPTSALDPIAT- 180 (247)
T ss_pred ------------------hh--------HhhCCcccCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCcccCCHHHH-
Confidence 00 01345678899999998888 4444 67877 899999999999994
Q ss_pred HHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 275 RREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 275 ~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
..+.+.+.+..+ ...-..+++.. ....+.+.+-.+++|.+-..++..+.
T Consensus 181 --~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 181 --GKIEELIQELKK--KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred --HHHHHHHHHHHh--cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 456666665543 22223444422 22334455666688887555554443
No 111
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.53 E-value=6.8e-14 Score=137.71 Aligned_cols=159 Identities=20% Similarity=0.239 Sum_probs=107.4
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc-c------ccCcce
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM-E------IDGSRT 118 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~-~------~~~~~~ 118 (602)
..+|+++++.+ ++++|+||||||||||+++|+|. .+++.| |++.+.++.. . .....+
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLL------------EKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcC------------CCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 35899999888 89999999999999999999998 478999 9999887431 0 123568
Q ss_pred EEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhh
Q 007480 119 SVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLI 198 (602)
Q Consensus 119 ~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~v 198 (602)
++++++...+ +..++.||+.+.... ++.......+
T Consensus 79 ~~~~q~~~~~---~~~t~~e~~~~~~~~-------~~~~~~~~~~----------------------------------- 113 (206)
T TIGR03608 79 GYLFQNFALI---ENETVEENLDLGLKY-------KKLSKKEKRE----------------------------------- 113 (206)
T ss_pred eEEecchhhc---cCCcHHHHHHHHHHh-------cCCCHHHHHH-----------------------------------
Confidence 9998886433 256888888774321 1111111111
Q ss_pred hhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHH
Q 007480 199 QRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRRE 277 (602)
Q Consensus 199 vRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~ 277 (602)
.++++++..+. ...++.+.++|+++++...++ .+++ .+|.+ .+.|||++.||+.. .+
T Consensus 114 ------------~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~la---ral~-~~p~l---lllDEPt~~LD~~~---~~ 171 (206)
T TIGR03608 114 ------------KKKEALEKVGLNLKLKQKIYELSGGEQQRVALA---RAIL-KDPPL---ILADEPTGSLDPKN---RD 171 (206)
T ss_pred ------------HHHHHHHHcCchhhhcCChhhCCHHHHHHHHHH---HHHH-cCCCE---EEEeCCcCCCCHHH---HH
Confidence 11222222221 111345677889998888887 4544 67777 89999999999999 45
Q ss_pred HHHHHHhhhc
Q 007480 278 QLKKLVASVT 287 (602)
Q Consensus 278 ~L~~~I~~~~ 287 (602)
.+.+.+.+..
T Consensus 172 ~l~~~l~~~~ 181 (206)
T TIGR03608 172 EVLDLLLELN 181 (206)
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 112
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.53 E-value=3e-14 Score=150.60 Aligned_cols=215 Identities=17% Similarity=0.168 Sum_probs=138.7
Q ss_pred cEEeeCCCcceEEeccc---cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEE
Q 007480 32 PIVEPDPGHTKLRLSRE---GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWV 104 (602)
Q Consensus 32 plv~~d~~~~~l~~~~e---al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi 104 (602)
|++..++.+ +.++.. ...+|+++++.+ ++++|+|+||||||||+++|+|+ .++++| |++
T Consensus 20 ~~l~~~nl~--~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl------------~~p~~G~I~i 85 (320)
T PRK13631 20 IILRVKNLY--CVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL------------IKSKYGTIQV 85 (320)
T ss_pred ceEEEEeEE--EEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCCeEEE
Confidence 577777654 344321 245899999988 89999999999999999999998 488999 999
Q ss_pred cCcccCcc-------------------ccCcceEEEeeccc-cccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHH
Q 007480 105 WGNPVEME-------------------IDGSRTSVFYLDTE-GFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREAD 164 (602)
Q Consensus 105 ~~~~~~~~-------------------~~~~~~~vvl~Dte-G~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~ 164 (602)
.|.++... ..+..+++++|+++ .+. ..++.||+.|+... .+... +
T Consensus 86 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~---~~tv~eni~~~~~~-------~~~~~----~- 150 (320)
T PRK13631 86 GDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLF---KDTIEKDIMFGPVA-------LGVKK----S- 150 (320)
T ss_pred CCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccc---cchHHHHHHhhHHh-------cCCCH----H-
Confidence 98765321 12456899999874 222 24888888775421 01000 0
Q ss_pred HHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhc
Q 007480 165 ISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMG 242 (602)
Q Consensus 165 l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f 242 (602)
...+..+++++.++.. ..++.+.++|++++++..++
T Consensus 151 ------------------------------------------~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiA 188 (320)
T PRK13631 151 ------------------------------------------EAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIA 188 (320)
T ss_pred ------------------------------------------HHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHH
Confidence 0011122222222221 12455678999999999998
Q ss_pred CCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCC
Q 007480 243 DNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPST 321 (602)
Q Consensus 243 ~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~ 321 (602)
++++ .+|.+ .+.|||+++||+... ..+.+.+.+..+ +..+-..+++.. .+..+.+.+-.|+.|.+-..
T Consensus 189 ---raL~-~~p~i---LLLDEPtsgLD~~~~---~~l~~~L~~l~~-~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~ 257 (320)
T PRK13631 189 ---GILA-IQPEI---LIFDEPTAGLDPKGE---HEMMQLILDAKA-NNKTVFVITHTMEHVLEVADEVIVMDKGKILKT 257 (320)
T ss_pred ---HHHH-cCCCE---EEEECCccCCCHHHH---HHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 5554 67777 799999999999994 455555655432 222334555532 23334566677789988777
Q ss_pred cchHHHH
Q 007480 322 GSLVEVF 328 (602)
Q Consensus 322 ~sl~e~~ 328 (602)
++..+.+
T Consensus 258 g~~~~~~ 264 (320)
T PRK13631 258 GTPYEIF 264 (320)
T ss_pred CCHHHHh
Confidence 7766554
No 113
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.53 E-value=6.8e-14 Score=136.38 Aligned_cols=158 Identities=21% Similarity=0.303 Sum_probs=104.9
Q ss_pred cccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-----ccCcceEEE
Q 007480 51 ETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-----IDGSRTSVF 121 (602)
Q Consensus 51 ~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-----~~~~~~~vv 121 (602)
.+|+++++.+ ++++|+||||||||||+++|+|. .+++.| |++.+.++... .....++++
T Consensus 6 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 73 (190)
T TIGR01166 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGL------------LRPQSGAVLIDGEPLDYSRKGLLERRQRVGLV 73 (190)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceeEEECCEEccccccchHHHHhhEEEE
Confidence 4789999888 89999999999999999999998 478999 99998776321 113468999
Q ss_pred eeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhc
Q 007480 122 YLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRD 201 (602)
Q Consensus 122 l~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRD 201 (602)
++++.... . ..++.||+.+.... ++.....
T Consensus 74 ~q~~~~~~-~-~~tv~~nl~~~~~~-------~~~~~~~----------------------------------------- 103 (190)
T TIGR01166 74 FQDPDDQL-F-AADVDQDVAFGPLN-------LGLSEAE----------------------------------------- 103 (190)
T ss_pred ecChhhcc-c-cccHHHHHHHHHHH-------cCCCHHH-----------------------------------------
Confidence 99864211 1 24788888764321 1110000
Q ss_pred cCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHH
Q 007480 202 FLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLK 280 (602)
Q Consensus 202 f~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~ 280 (602)
..+.++++++.++. ...++.+.++|++++++..++ .+++ .+|.+ .+.|||+++||+...+ .+.
T Consensus 104 ------~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la---ral~-~~p~l---lllDEPt~~LD~~~~~---~~~ 167 (190)
T TIGR01166 104 ------VERRVREALTAVGASGLRERPTHCLSGGEKKRVAIA---GAVA-MRPDV---LLLDEPTAGLDPAGRE---QML 167 (190)
T ss_pred ------HHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHH---HHHh-cCCCE---EEEcCCcccCCHHHHH---HHH
Confidence 01112222222221 111345678899999988887 4544 67777 8999999999999954 555
Q ss_pred HHHhhh
Q 007480 281 KLVASV 286 (602)
Q Consensus 281 ~~I~~~ 286 (602)
+.+.+.
T Consensus 168 ~~l~~~ 173 (190)
T TIGR01166 168 AILRRL 173 (190)
T ss_pred HHHHHH
Confidence 555554
No 114
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.53 E-value=3.8e-14 Score=143.19 Aligned_cols=192 Identities=18% Similarity=0.188 Sum_probs=115.8
Q ss_pred cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc--ccCcceEEEe
Q 007480 49 GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME--IDGSRTSVFY 122 (602)
Q Consensus 49 al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~--~~~~~~~vvl 122 (602)
...+|+++++.+ ++++|+|+||||||||+++|+|. .++++| |++.+.+.... .....+++++
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl------------~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~ 100 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGL------------LQPTSGEVRVAGLVPWKRRKKFLRRIGVVF 100 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------cCCCceEEEECCEEccccchhhcccEEEEc
Confidence 356899999888 89999999999999999999998 478999 99988764321 1234677877
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
++...+. +..++.|++.+.... ++.......+.+
T Consensus 101 ~~~~~~~--~~~tv~e~l~~~~~~-------~~~~~~~~~~~~------------------------------------- 134 (236)
T cd03267 101 GQKTQLW--WDLPVIDSFYLLAAI-------YDLPPARFKKRL------------------------------------- 134 (236)
T ss_pred CCccccC--CCCcHHHHHHHHHHH-------cCCCHHHHHHHH-------------------------------------
Confidence 4433222 256788887664322 111110001111
Q ss_pred CCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKK 281 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~ 281 (602)
+.+++..+. +..++.+.++|++++++..++ .+++ ..|.+ .+.|||+++||+.. .+.+.+
T Consensus 135 ----------~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la---~al~-~~p~l---lllDEPt~~LD~~~---~~~l~~ 194 (236)
T cd03267 135 ----------DELSELLDLEELLDTPVRQLSLGQRMRAEIA---AALL-HEPEI---LFLDEPTIGLDVVA---QENIRN 194 (236)
T ss_pred ----------HHHHHHcCChhHhcCChhhCCHHHHHHHHHH---HHHh-cCCCE---EEEcCCCCCCCHHH---HHHHHH
Confidence 111221111 011345678899999988887 4444 67777 79999999999999 456666
Q ss_pred HHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCC
Q 007480 282 LVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEI 318 (602)
Q Consensus 282 ~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~v 318 (602)
.+.+..+.+...-..+++.. +..-+.+.+-.+++|.+
T Consensus 195 ~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i 232 (236)
T cd03267 195 FLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRL 232 (236)
T ss_pred HHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEE
Confidence 66655432222223444432 22222233333455544
No 115
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.53 E-value=1.8e-14 Score=147.78 Aligned_cols=199 Identities=18% Similarity=0.177 Sum_probs=125.8
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGN 107 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~ 107 (602)
+.+.+++.+.++ ....+|+++++.+ ++++|+||||||||||+++|+|. .++++| |++.+.
T Consensus 11 ~~l~i~~l~~~~----~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl------------~~p~~G~i~~~g~ 74 (257)
T PRK11247 11 TPLLLNAVSKRY----GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL------------ETPSAGELLAGTA 74 (257)
T ss_pred CcEEEEEEEEEE----CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCeEEEECCE
Confidence 445665543332 2346899999988 89999999999999999999998 488999 988776
Q ss_pred ccCccccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCccc
Q 007480 108 PVEMEIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDV 187 (602)
Q Consensus 108 ~~~~~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~ 187 (602)
++.. ....+++++++...+ +..++.||+.+.+ +. . ..+.+.++...+++.+
T Consensus 75 ~~~~--~~~~i~~v~q~~~l~---~~~tv~enl~~~~---------~~---~-~~~~~~~~l~~~gl~~----------- 125 (257)
T PRK11247 75 PLAE--AREDTRLMFQDARLL---PWKKVIDNVGLGL---------KG---Q-WRDAALQALAAVGLAD----------- 125 (257)
T ss_pred EHHH--hhCceEEEecCccCC---CCCcHHHHHHhcc---------cc---h-HHHHHHHHHHHcCChh-----------
Confidence 6531 245689999986433 3468888877632 10 0 0111222222111110
Q ss_pred ccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCC
Q 007480 188 AFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEE 267 (602)
Q Consensus 188 ~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~ 267 (602)
..++.+.++|++++++..++ .+++ ..|.+ .+.|||+++
T Consensus 126 -----------------------------------~~~~~~~~LSgGqkqrl~la---raL~-~~p~l---llLDEPt~~ 163 (257)
T PRK11247 126 -----------------------------------RANEWPAALSGGQKQRVALA---RALI-HRPGL---LLLDEPLGA 163 (257)
T ss_pred -----------------------------------HhcCChhhCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCCCC
Confidence 01345678899999998888 4444 67777 789999999
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCC
Q 007480 268 LDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPS 320 (602)
Q Consensus 268 Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~ 320 (602)
||+... ..+.+.+.+..+.....-..+++.. ....+.+.+-.+++|.+-.
T Consensus 164 LD~~~~---~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 164 LDALTR---IEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred CCHHHH---HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999994 4555555554322122234555532 2233345555567777644
No 116
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.53 E-value=3.4e-14 Score=150.62 Aligned_cols=219 Identities=16% Similarity=0.207 Sum_probs=140.3
Q ss_pred cEEeeCCCcceEEecc------ccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-
Q 007480 32 PIVEPDPGHTKLRLSR------EGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG- 101 (602)
Q Consensus 32 plv~~d~~~~~l~~~~------eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG- 101 (602)
+++.+++.+..|.... ....+|+++++.| ++++|+|+||||||||+++|+|+ .+++.|
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl------------~~p~~G~ 71 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMI------------ETPTGGE 71 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcC------------CCCCCcE
Confidence 4566666544443211 1356899999998 89999999999999999999998 478899
Q ss_pred eEEcCcccCcc------ccCcceEEEeecccc-ccccCCCCchhHHHHHHHhhhhhhhhc-ccchhhhHHHHHHHHHHHh
Q 007480 102 IWVWGNPVEME------IDGSRTSVFYLDTEG-FESIGKSNVYDDRIFALATVMSSVLIY-NLPETIREADISRLSFAVE 173 (602)
Q Consensus 102 Iwi~~~~~~~~------~~~~~~~vvl~DteG-~~~~~~~tv~d~~ifaLa~LLSS~~Iy-N~~~~i~e~~l~~L~~~~~ 173 (602)
|.+.+.++... ..+..+++++||+.. +. +..++.+++...+.. + .....
T Consensus 72 i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~--p~~~v~~~l~~~~~~-------~~~~~~~-------------- 128 (327)
T PRK11308 72 LYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLN--PRKKVGQILEEPLLI-------NTSLSAA-------------- 128 (327)
T ss_pred EEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcC--CccCHHHHHHHHHHH-------ccCCCHH--------------
Confidence 99999876421 124579999999743 32 345676666554322 1 00010
Q ss_pred hhhhhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEcc
Q 007480 174 LAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSLP 251 (602)
Q Consensus 174 L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L~ 251 (602)
...+.+.++|+.++.. ..++.+.++|++++++..++ .+++ .
T Consensus 129 ---------------------------------~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iA---rAL~-~ 171 (327)
T PRK11308 129 ---------------------------------ERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIA---RALM-L 171 (327)
T ss_pred ---------------------------------HHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHH---HHHH-c
Confidence 1112233333333321 12456778999999999888 4444 6
Q ss_pred CccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 252 QPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 252 ~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
+|.+ .+.|||++.||+...+ ++.+.+.++.+.....-..+|+. .++..+.+.+-.+..|.+-..++..+..
T Consensus 172 ~P~l---LilDEPts~LD~~~~~---~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 172 DPDV---VVADEPVSALDVSVQA---QVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred CCCE---EEEECCCccCCHHHHH---HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 7877 8999999999999954 45555555433223334456653 3444456667777889886666554443
No 117
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.53 E-value=3.6e-14 Score=147.22 Aligned_cols=200 Identities=21% Similarity=0.214 Sum_probs=126.6
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCc---c-eEEcCcccCcc---ccCcceE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTK---G-IWVWGNPVEME---IDGSRTS 119 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~Tk---G-Iwi~~~~~~~~---~~~~~~~ 119 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|.. +++. | |++.+.++... ..+..++
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~------------~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig 87 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLL------------LPDDNPNSKITVDGITLTAKTVWDIREKVG 87 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhccc------------CCCCCCCcEEEECCEECCcCCHHHHHhheE
Confidence 45899999988 899999999999999999999983 5665 8 99999876431 1235689
Q ss_pred EEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhh
Q 007480 120 VFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQ 199 (602)
Q Consensus 120 vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vv 199 (602)
++++|+..+. ...++.||+.|.... ++.......+.+
T Consensus 88 ~v~q~~~~~~--~~~tv~enl~~~~~~-------~~~~~~~~~~~~---------------------------------- 124 (282)
T PRK13640 88 IVFQNPDNQF--VGATVGDDVAFGLEN-------RAVPRPEMIKIV---------------------------------- 124 (282)
T ss_pred EEEECHHHhh--ccCCHHHHHHhhHHh-------CCCCHHHHHHHH----------------------------------
Confidence 9999975321 246888988765422 111111001112
Q ss_pred hccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHH
Q 007480 200 RDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQ 278 (602)
Q Consensus 200 RDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~ 278 (602)
..+++.++. +..++.+..+|+++++...++ .++ +.+|.+ .+.|||+++||+... ..
T Consensus 125 -------------~~~l~~~~L~~~~~~~~~~LS~G~~qrv~la---ral-~~~P~l---lllDEPt~gLD~~~~---~~ 181 (282)
T PRK13640 125 -------------RDVLADVGMLDYIDSEPANLSGGQKQRVAIA---GIL-AVEPKI---IILDESTSMLDPAGK---EQ 181 (282)
T ss_pred -------------HHHHHHCCChhHhcCCcccCCHHHHHHHHHH---HHH-HcCCCE---EEEECCcccCCHHHH---HH
Confidence 222222221 111345678889999888887 444 467777 889999999999994 45
Q ss_pred HHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 279 LKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 279 L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
+.+.+.+..+.....-..+++.. ... ..+.+-.|++|.+-..++..+..
T Consensus 182 l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 182 ILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 66666555332222333444432 222 34555556788776655554443
No 118
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.53 E-value=3.3e-14 Score=162.79 Aligned_cols=220 Identities=18% Similarity=0.198 Sum_probs=142.1
Q ss_pred cEEeeCCCcceEEecc-------ccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc
Q 007480 32 PIVEPDPGHTKLRLSR-------EGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG 101 (602)
Q Consensus 32 plv~~d~~~~~l~~~~-------eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG 101 (602)
|++.+++.+..|.... ....+|+++++.| ++++|+|+||||||||+++|+|+ .+++.|
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl------------~~p~~G 379 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRL------------VESQGG 379 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcC------------CCCCCc
Confidence 5777776544442110 1246899999998 89999999999999999999998 478999
Q ss_pred -eEEcCcccCcc------ccCcceEEEeeccc-cccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHh
Q 007480 102 -IWVWGNPVEME------IDGSRTSVFYLDTE-GFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVE 173 (602)
Q Consensus 102 -Iwi~~~~~~~~------~~~~~~~vvl~Dte-G~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~ 173 (602)
|++.|.++... ..+.++++++||+. .+. +..++.|++.+.+.. ++....
T Consensus 380 ~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~--~~~tv~~~l~~~~~~-------~~~~~~-------------- 436 (623)
T PRK10261 380 EIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLD--PRQTVGDSIMEPLRV-------HGLLPG-------------- 436 (623)
T ss_pred EEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcC--CCCCHHHHHHHHHHH-------cCCCCH--------------
Confidence 99998766421 12357899999863 332 356888888765432 111000
Q ss_pred hhhhhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEcc
Q 007480 174 LAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSLP 251 (602)
Q Consensus 174 L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L~ 251 (602)
....+.+++.|+.++.. ..++.+.++|++++++..++ .+++ .
T Consensus 437 --------------------------------~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iA---raL~-~ 480 (623)
T PRK10261 437 --------------------------------KAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIA---RALA-L 480 (623)
T ss_pred --------------------------------HHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHH---HHHh-c
Confidence 00111222333333221 12456788999999999998 4444 6
Q ss_pred CccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 252 QPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 252 ~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
.|.+ .++|||++.||+...+ ++.+.|.++.+.....-..+|+. ..+..+.+.+-.|.+|.+-..++..+++
T Consensus 481 ~p~l---lllDEPts~LD~~~~~---~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 481 NPKV---IIADEAVSALDVSIRG---QIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred CCCE---EEEeCCcccCCHHHHH---HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 7887 8999999999999954 45555555433223344566663 3444455666677888876555555543
No 119
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=3.3e-14 Score=147.06 Aligned_cols=200 Identities=22% Similarity=0.295 Sum_probs=127.5
Q ss_pred cccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEEEee
Q 007480 51 ETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSVFYL 123 (602)
Q Consensus 51 ~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~vvl~ 123 (602)
.+|+++++.+ ++++|+|+||||||||+++|+|. .++++| |.+.|.++... .....++++++
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 85 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGI------------LKPTSGSVLIRGEPITKENIREVRKFVGLVFQ 85 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCceEEEECCEECCcCCHHHHHhheEEEec
Confidence 4899999988 99999999999999999999998 488999 99998866421 12356899999
Q ss_pred ccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccC
Q 007480 124 DTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFL 203 (602)
Q Consensus 124 DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~ 203 (602)
|..... ...++.|++.+.... +.....
T Consensus 86 ~~~~~~--~~~tv~~~l~~~~~~-------~~~~~~-------------------------------------------- 112 (277)
T PRK13652 86 NPDDQI--FSPTVEQDIAFGPIN-------LGLDEE-------------------------------------------- 112 (277)
T ss_pred Cccccc--ccccHHHHHHhHHHH-------cCCCHH--------------------------------------------
Confidence 975321 134788887654321 111100
Q ss_pred CcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 007480 204 QGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 204 ~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~ 282 (602)
..++..+++++.++. +..++.+.++|+++++...++ .++. .+|.+ .+.|||+++||+... ..+.+.
T Consensus 113 ---~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~la---raL~-~~p~l---lilDEPt~gLD~~~~---~~l~~~ 179 (277)
T PRK13652 113 ---TVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIA---GVIA-MEPQV---LVLDEPTAGLDPQGV---KELIDF 179 (277)
T ss_pred ---HHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHH---HHHH-cCCCE---EEEeCCcccCCHHHH---HHHHHH
Confidence 011112223333222 111345678899999988887 4444 67777 889999999999994 456666
Q ss_pred HhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 283 VASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 283 I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
+.+..+.+...-..+|+. ....-+.+.+-.|++|.+-..++..+..
T Consensus 180 l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 180 LNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 665543222233344442 2222344555566888876656655543
No 120
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.52 E-value=4.4e-14 Score=156.06 Aligned_cols=224 Identities=18% Similarity=0.169 Sum_probs=160.7
Q ss_pred cccEEeeCCCcceEEecc-------ccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCC
Q 007480 30 AFPIVEPDPGHTKLRLSR-------EGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKT 99 (602)
Q Consensus 30 ~iplv~~d~~~~~l~~~~-------eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~T 99 (602)
+-|++.+++.+..|.... ....+++++|+.+ +++||||+||||||||.++|+|+ .+|+
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL------------~~P~ 344 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL------------LPPS 344 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCC------------CCCC
Confidence 457888888777776522 3467899999999 99999999999999999999999 4789
Q ss_pred cc-eEEcCcccCcc-----ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccch-hhhHHHHHHHHHHH
Q 007480 100 KG-IWVWGNPVEME-----IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPE-TIREADISRLSFAV 172 (602)
Q Consensus 100 kG-Iwi~~~~~~~~-----~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~-~i~e~~l~~L~~~~ 172 (602)
.| |.+.|.+.... ..+.++.++|||+...- .|+.|+.+++..++.. ++... ....+.+..|...+
T Consensus 345 ~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SL-nPr~tV~~~i~epL~~-------~~~~~~~~~~~rv~~ll~~V 416 (539)
T COG1123 345 SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSL-NPRMTVGDILAEPLRI-------HGGGSGAERRARVAELLELV 416 (539)
T ss_pred CceEEEeCcccccccchhhhhhhheEEEEeCccccc-CccccHHHHHHhHHhh-------hcccchHHHHHHHHHHHHHc
Confidence 99 88888773221 13467899999987642 3688999998888765 33221 22233455555555
Q ss_pred hhhhhhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccC
Q 007480 173 ELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQ 252 (602)
Q Consensus 173 ~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~ 252 (602)
+|... . .++++.++|++++|+.+++ +++. ..
T Consensus 417 gL~~~-------------------------------------~--------l~ryP~elSGGQrQRvaIA---RALa-~~ 447 (539)
T COG1123 417 GLPPE-------------------------------------F--------LDRYPHELSGGQRQRVAIA---RALA-LE 447 (539)
T ss_pred CCCHH-------------------------------------H--------HhcCchhcCcchhHHHHHH---HHHh-cC
Confidence 44211 1 1466788999999999998 5555 67
Q ss_pred ccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 253 PHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 253 P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
|.+ .++|||++.||+--..++-++..-+.+ .-.+.=..|++. .+...+++.+-.+..|.+-..++..+++
T Consensus 448 P~l---li~DEp~SaLDvsvqa~VlnLl~~lq~---e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 448 PKL---LILDEPVSALDVSVQAQVLNLLKDLQE---ELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred CCE---EEecCCccccCHHHHHHHHHHHHHHHH---HhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHh
Confidence 888 899999999999996655554443332 234444577774 4667788888888999998887655544
No 121
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.52 E-value=2.8e-14 Score=159.27 Aligned_cols=210 Identities=11% Similarity=0.147 Sum_probs=135.2
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGN 107 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~ 107 (602)
|++.+++.+.+| + ...+|+++++.+ ++++|+|||||||||||++|+|. .+++.| |++.|.
T Consensus 3 ~~i~~~~l~~~~--~--~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~------------~~p~~G~i~~~g~ 66 (501)
T PRK10762 3 ALLQLKGIDKAF--P--GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGI------------YTRDAGSILYLGK 66 (501)
T ss_pred ceEEEeeeEEEe--C--CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEECCE
Confidence 356666544333 2 346899999988 99999999999999999999998 478999 999987
Q ss_pred ccCccc----cCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccC
Q 007480 108 PVEMEI----DGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVK 183 (602)
Q Consensus 108 ~~~~~~----~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~ 183 (602)
++.... .+..+++++|+...+ +..++.|++.+++.. +...+..
T Consensus 67 ~~~~~~~~~~~~~~i~~v~q~~~~~---~~~tv~e~l~~~~~~-------~~~~~~~----------------------- 113 (501)
T PRK10762 67 EVTFNGPKSSQEAGIGIIHQELNLI---PQLTIAENIFLGREF-------VNRFGRI----------------------- 113 (501)
T ss_pred ECCCCCHHHHHhCCEEEEEcchhcc---CCCcHHHHhhhcccc-------ccccCcc-----------------------
Confidence 764211 134689999986433 356889988764321 0000000
Q ss_pred CcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCC
Q 007480 184 GQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCD 262 (602)
Q Consensus 184 ~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d 262 (602)
+.....+.++++|+.++. ...++.+.++|++++++..++ .+++ .+|.+ .+.|
T Consensus 114 --------------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la---~al~-~~p~l---llLD 166 (501)
T PRK10762 114 --------------------DWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIA---KVLS-FESKV---IIMD 166 (501)
T ss_pred --------------------CHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHH---HHHh-cCCCE---EEEe
Confidence 000112234445555443 223567889999999999998 4544 77887 8999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCC
Q 007480 263 MKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPST 321 (602)
Q Consensus 263 ~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~ 321 (602)
||++.||+...+ .+.+.+.+..+ +...-..+++. ....-+.+.+-.|++|.+-..
T Consensus 167 EPt~~LD~~~~~---~l~~~l~~l~~-~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~ 222 (501)
T PRK10762 167 EPTDALTDTETE---SLFRVIRELKS-QGRGIVYISHRLKEIFEICDDVTVFRDGQFIAE 222 (501)
T ss_pred CCcCCCCHHHHH---HHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 999999999954 55555555432 22223444543 233334455556688876443
No 122
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.52 E-value=1e-14 Score=157.33 Aligned_cols=202 Identities=19% Similarity=0.186 Sum_probs=133.5
Q ss_pred ccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcc----cCc-cc-----
Q 007480 48 EGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNP----VEM-EI----- 113 (602)
Q Consensus 48 eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~----~~~-~~----- 113 (602)
....+|+++++.+ ++++|+|+||||||||+++|+|+ .+++.| |.+.+++ +.. ..
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl------------~~p~~G~I~idG~~~~~~i~~~~~~~l~~ 102 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGL------------NPVSRGSVLVKDGDGSIDVANCDAATLRR 102 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC------------CCCCCcEEEECCEecccccccCCHHHHHH
Confidence 3455789999988 89999999999999999999998 488999 9998853 211 00
Q ss_pred -cCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcc
Q 007480 114 -DGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPA 192 (602)
Q Consensus 114 -~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~ 192 (602)
.+..+++++|+...+ +..|+.||+.+++.. .+.....
T Consensus 103 ~r~~~i~~vfQ~~~l~---p~~Tv~eNi~~~~~~-------~g~~~~~-------------------------------- 140 (382)
T TIGR03415 103 LRTHRVSMVFQKFALM---PWLTVEENVAFGLEM-------QGMPEAE-------------------------------- 140 (382)
T ss_pred HhcCCEEEEECCCcCC---CCCcHHHHHHHHHHh-------cCCCHHH--------------------------------
Confidence 125799999987544 367999999886532 1111111
Q ss_pred cchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHH
Q 007480 193 KLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPI 271 (602)
Q Consensus 193 ~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~ 271 (602)
..+..+++++.++. ...++.+.++|++++++..++ +++. ..|.+ .+.|||++.|||.
T Consensus 141 ---------------~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LA---RALa-~~P~I---LLlDEPts~LD~~ 198 (382)
T TIGR03415 141 ---------------RRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLA---RAFA-MDADI---LLMDEPFSALDPL 198 (382)
T ss_pred ---------------HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH---HHHh-cCCCE---EEEECCCccCCHH
Confidence 11222333333332 112456778999999999888 5554 67777 8899999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 272 YVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 272 F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
.. .++.+.+.++.+.....-..+|+.. .+..+.+.+-.|++|.+-..++..+..
T Consensus 199 ~r---~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 199 IR---TQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred HH---HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 94 4555555554332223334555532 223344555566889887777766554
No 123
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.52 E-value=2.8e-14 Score=164.19 Aligned_cols=215 Identities=16% Similarity=0.161 Sum_probs=148.5
Q ss_pred cceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc---c
Q 007480 40 HTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM---E 112 (602)
Q Consensus 40 ~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~---~ 112 (602)
+-.|+++++...+|+++++.+ +.|+|+|+||||||||++.|.|+ ..|+.| |.++|.++.. .
T Consensus 476 nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gl------------y~p~~G~I~~dg~dl~~i~~~ 543 (709)
T COG2274 476 NVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL------------YKPQQGRILLDGVDLNDIDLA 543 (709)
T ss_pred EEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCceEEECCEeHHhcCHH
Confidence 346788887778999999988 99999999999999999999999 589999 9999998764 2
Q ss_pred ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcc
Q 007480 113 IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPA 192 (602)
Q Consensus 113 ~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~ 192 (602)
.-++++++|.||+..+. +|+.||+.++-. ..+.+++-+.....++.+.+. -.|.
T Consensus 544 ~lR~~ig~V~Q~~~Lf~----gSI~eNi~l~~p-------------~~~~e~i~~A~~~ag~~~fI~---------~lP~ 597 (709)
T COG2274 544 SLRRQVGYVLQDPFLFS----GSIRENIALGNP-------------EATDEEIIEAAQLAGAHEFIE---------NLPM 597 (709)
T ss_pred HHHhheeEEcccchhhc----CcHHHHHhcCCC-------------CCCHHHHHHHHHHhCcHHHHH---------hccc
Confidence 35789999999998774 589999887421 222334444444444433332 1231
Q ss_pred cchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHH
Q 007480 193 KLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIY 272 (602)
Q Consensus 193 ~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F 272 (602)
..-- .+ .+.-..+|+|++|+.++| +++. ..|.+ .+.||+++.||++-
T Consensus 598 gy~t---------------------~v-----~E~G~~LSGGQrQrlalA---RaLl-~~P~I---LlLDEaTSaLD~~s 644 (709)
T COG2274 598 GYDT---------------------PV-----GEGGANLSGGQRQRLALA---RALL-SKPKI---LLLDEATSALDPET 644 (709)
T ss_pred cccc---------------------cc-----ccCCCCCCHHHHHHHHHH---HHhc-cCCCE---EEEeCcccccCHhH
Confidence 1100 01 112246899999999999 6766 67777 79999999999998
Q ss_pred HHHHHHHHHHHhhhcCCCccceEeeccHHHHHHHHHHHHHHcCCCCCCCcchHHHHhH
Q 007480 273 VKRREQLKKLVASVTRPKIVQGKFLNGNEFVAFMEQILEALNKGEIPSTGSLVEVFNK 330 (602)
Q Consensus 273 ~e~~~~L~~~I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aINsG~vP~~~sl~e~~n~ 330 (602)
.+ .+.+.+.+...-+ +-..++++.-.---.+.+-.+..|.+...++-.|..+.
T Consensus 645 E~---~I~~~L~~~~~~~--T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 645 EA---IILQNLLQILQGR--TVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred HH---HHHHHHHHHhcCC--eEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh
Confidence 44 4445554443222 23566665432223334445588999999987776543
No 124
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=4.3e-14 Score=146.05 Aligned_cols=198 Identities=19% Similarity=0.182 Sum_probs=126.7
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc----ccCcceEEE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME----IDGSRTSVF 121 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~----~~~~~~~vv 121 (602)
..+|+++++.+ ++++|+|+||+||||||++|+|. .+++.| |++.+.++... .....++++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 82 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGL------------LRPQKGKVLVSGIDTGDFSKLQGIRKLVGIV 82 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCceEEECCEECCccccHHHHHhheEEE
Confidence 34899999998 89999999999999999999998 478999 99999876421 123568999
Q ss_pred eecccc-ccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhh
Q 007480 122 YLDTEG-FESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQR 200 (602)
Q Consensus 122 l~DteG-~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvR 200 (602)
++++.. +. ..++.||+.+.... +.....
T Consensus 83 ~q~~~~~~~---~~tv~enl~~~~~~-------~~~~~~----------------------------------------- 111 (274)
T PRK13644 83 FQNPETQFV---GRTVEEDLAFGPEN-------LCLPPI----------------------------------------- 111 (274)
T ss_pred EEChhhhcc---cchHHHHHHhhHHH-------cCCCHH-----------------------------------------
Confidence 998642 22 34777887654321 111000
Q ss_pred ccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHH
Q 007480 201 DFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQL 279 (602)
Q Consensus 201 Df~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L 279 (602)
...+.++.+++.++. ...++.+.++|++++++..++ .+++ ..|.+ .+.|||+++||+... ..+
T Consensus 112 ------~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la---ral~-~~p~l---llLDEPt~gLD~~~~---~~l 175 (274)
T PRK13644 112 ------EIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALA---GILT-MEPEC---LIFDEVTSMLDPDSG---IAV 175 (274)
T ss_pred ------HHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHH---HHHH-cCCCE---EEEeCCcccCCHHHH---HHH
Confidence 111222333333322 112345678899999998888 4444 67777 899999999999984 456
Q ss_pred HHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 280 KKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 280 ~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
.+.+.++.. +...-..+|+.. ... ..+.+-.+++|.+-..++..+..
T Consensus 176 ~~~l~~l~~-~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 176 LERIKKLHE-KGKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred HHHHHHHHh-CCCEEEEEecCHHHHh-hCCEEEEEECCEEEEECCHHHHh
Confidence 666655432 222333444432 222 23444455888876666655544
No 125
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=4.9e-14 Score=142.44 Aligned_cols=198 Identities=14% Similarity=0.216 Sum_probs=123.2
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc----cCcceEEE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI----DGSRTSVF 121 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~----~~~~~~vv 121 (602)
..+|+++++.+ ++++|+||||||||||+++|+|. .+++.| |.+.+.++.... .+..++++
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 83 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI------------VPRDAGNIIIDDEDISLLPLHARARRGIGYL 83 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEECCEECCCCCHHHHHHhCeEEe
Confidence 45899999888 89999999999999999999998 478999 999988764211 13568999
Q ss_pred eeccccccccCCCCchhHHHHHHHhhhhhhhhcc-cchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhh
Q 007480 122 YLDTEGFESIGKSNVYDDRIFALATVMSSVLIYN-LPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQR 200 (602)
Q Consensus 122 l~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN-~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvR 200 (602)
+++...+. ..++.||+.+.... +. ......+
T Consensus 84 ~q~~~~~~---~~tv~enl~~~~~~-------~~~~~~~~~~-------------------------------------- 115 (241)
T PRK10895 84 PQEASIFR---RLSVYDNLMAVLQI-------RDDLSAEQRE-------------------------------------- 115 (241)
T ss_pred ccCCcccc---cCcHHHHHhhhhhc-------ccccCHHHHH--------------------------------------
Confidence 98864432 45888887654211 10 0000001
Q ss_pred ccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHH
Q 007480 201 DFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQL 279 (602)
Q Consensus 201 Df~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L 279 (602)
+.+++.++..+. ...++.+.++|++++++..++ .+++ .+|.+ .+.|||+++||+...+ .+
T Consensus 116 ---------~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la---ral~-~~p~l---lllDEPt~~LD~~~~~---~l 176 (241)
T PRK10895 116 ---------DRANELMEEFHIEHLRDSMGQSLSGGERRRVEIA---RALA-ANPKF---ILLDEPFAGVDPISVI---DI 176 (241)
T ss_pred ---------HHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHH---HHHh-cCCCE---EEEcCCcccCCHHHHH---HH
Confidence 111122222111 011345678899999988887 4544 67777 8899999999999854 44
Q ss_pred HHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 280 KKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 280 ~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
.+.+....+ +...-..+++.. ...-+.+.+-.+++|.+-..++..+.
T Consensus 177 ~~~l~~~~~-~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 177 KRIIEHLRD-SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred HHHHHHHHh-cCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 444544322 222223444432 23333344555678887555554443
No 126
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.52 E-value=1.8e-13 Score=136.16 Aligned_cols=170 Identities=14% Similarity=0.050 Sum_probs=111.0
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGN 107 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~ 107 (602)
|++.+++.+.+ + ....+++++++.+ ++++|+|+||||||||+++|+|. .+++.| |++.++
T Consensus 10 ~~l~~~~l~~~--~--~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~------------~~~~~G~i~~~g~ 73 (214)
T PRK13543 10 PLLAAHALAFS--R--NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGL------------LHVESGQIQIDGK 73 (214)
T ss_pred ceEEEeeEEEe--c--CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCC------------CCCCCeeEEECCE
Confidence 56777654332 2 2345899999988 89999999999999999999998 488999 999988
Q ss_pred ccCccccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCccc
Q 007480 108 PVEMEIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDV 187 (602)
Q Consensus 108 ~~~~~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~ 187 (602)
++........++++.++..-+ +..++.|++.+.... ++. ..++.
T Consensus 74 ~i~~~~~~~~i~~~~q~~~~~---~~~t~~e~l~~~~~~-------~~~---~~~~~----------------------- 117 (214)
T PRK13543 74 TATRGDRSRFMAYLGHLPGLK---ADLSTLENLHFLCGL-------HGR---RAKQM----------------------- 117 (214)
T ss_pred EccchhhhhceEEeecCcccc---cCCcHHHHHHHHHHh-------cCC---cHHHH-----------------------
Confidence 764321234577887764322 245788887653321 110 00111
Q ss_pred ccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCC
Q 007480 188 AFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDE 266 (602)
Q Consensus 188 ~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~ 266 (602)
.+.+++.++. ...++.+.+++++++++..++ .+++ ..|.+ .+.|||++
T Consensus 118 ------------------------~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la---ral~-~~p~l---lllDEPt~ 166 (214)
T PRK13543 118 ------------------------PGSALAIVGLAGYEDTLVRQLSAGQKKRLALA---RLWL-SPAPL---WLLDEPYA 166 (214)
T ss_pred ------------------------HHHHHHHcCChhhccCChhhCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCcc
Confidence 1112222211 111355678899999988887 4444 66777 78999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhc
Q 007480 267 ELDPIYVKRREQLKKLVASVT 287 (602)
Q Consensus 267 ~Ld~~F~e~~~~L~~~I~~~~ 287 (602)
+||++.. +.+.+.+.+..
T Consensus 167 ~LD~~~~---~~l~~~l~~~~ 184 (214)
T PRK13543 167 NLDLEGI---TLVNRMISAHL 184 (214)
T ss_pred cCCHHHH---HHHHHHHHHHH
Confidence 9999995 45555565543
No 127
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=4.4e-14 Score=149.92 Aligned_cols=229 Identities=12% Similarity=0.150 Sum_probs=140.2
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGN 107 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~ 107 (602)
+++.+++.+..|........+|+++++.| ++++|+|+||||||||+++|+|+.. + ...++.| |++.|.
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~-------~-~~~~~~G~i~~~g~ 73 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTK-------D-NWRVTADRMRFDDI 73 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCC-------C-CCCCcceEEEECCE
Confidence 35666665544432223456899999998 8999999999999999999999830 0 0025789 999998
Q ss_pred ccCccc-------cCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhc
Q 007480 108 PVEMEI-------DGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYG 180 (602)
Q Consensus 108 ~~~~~~-------~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~ 180 (602)
++.... .+..+++++||.... ..+..++.+++.+.+.. +...+.
T Consensus 74 ~i~~~~~~~~~~~~~~~i~~v~Q~~~~~-l~p~~tv~~~l~~~~~~-------~~~~~~--------------------- 124 (330)
T PRK15093 74 DLLRLSPRERRKLVGHNVSMIFQEPQSC-LDPSERVGRQLMQNIPG-------WTYKGR--------------------- 124 (330)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCcchh-cCccccHHHHHHHHHHh-------hhcccc---------------------
Confidence 764211 134799999997532 12355677776553321 000000
Q ss_pred ccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCC----CCCCchhhhhHHHHHHhhcCCCcEEEccCccch
Q 007480 181 RVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDK----GDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLL 256 (602)
Q Consensus 181 ~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~----~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~ 256 (602)
|. .......+.+.++|+.++... .++.+.++|++++++..++ .+++ ..|.+
T Consensus 125 ---------------~~-----~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iA---rAL~-~~P~l- 179 (330)
T PRK15093 125 ---------------WW-----QRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIA---IALA-NQPRL- 179 (330)
T ss_pred ---------------cc-----ccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHH---HHHH-CCCCE-
Confidence 00 000001122333344333211 1356778999999999888 4444 67877
Q ss_pred hcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 257 RTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 257 ~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
.+.|||++.||+... .++.+.+.++.+.....-..+|+. .++..+.+.+-.++.|.+-..++..+.
T Consensus 180 --lilDEPts~LD~~~~---~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~~~~i 246 (330)
T PRK15093 180 --LIADEPTNAMEPTTQ---AQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKEL 246 (330)
T ss_pred --EEEeCCCCcCCHHHH---HHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 899999999999984 455566655543234444566663 333345556666688988665555444
No 128
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.52 E-value=6.5e-14 Score=143.11 Aligned_cols=203 Identities=17% Similarity=0.203 Sum_probs=122.8
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccC----CCcc-eEEcCcccCc-----cccCc
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDT----KTKG-IWVWGNPVEM-----EIDGS 116 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~----~TkG-Iwi~~~~~~~-----~~~~~ 116 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|.. .+ +++| |++.+.++.. ...+.
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~-----------~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~ 85 (258)
T PRK14241 17 FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMH-----------EVIPGARVEGEVLLDGEDLYGPGVDPVAVRR 85 (258)
T ss_pred EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccC-----------CcccCCCcceEEEECCEeccccccChHHHhc
Confidence 45899999888 999999999999999999999983 22 3799 9999877531 11235
Q ss_pred ceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhccc-chhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccch
Q 007480 117 RTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNL-PETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLV 195 (602)
Q Consensus 117 ~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~-~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~fl 195 (602)
.+++++++...+ +..++.||+.++... ++. .....++.++++...+++.+.
T Consensus 86 ~i~~~~q~~~~~---~~~tv~~nl~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~~------------------ 137 (258)
T PRK14241 86 TIGMVFQRPNPF---PTMSIRDNVVAGLKL-------NGVRNKKDLDELVEKSLRGANLWNE------------------ 137 (258)
T ss_pred ceEEEccccccC---CCCcHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHHcCCchh------------------
Confidence 689999886544 356889998765422 111 000001111111111111000
Q ss_pred hhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHH
Q 007480 196 WLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKR 275 (602)
Q Consensus 196 w~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~ 275 (602)
++. ..++.+.++|++++++..++ .+++ ..|.+ .+.|||++.||+...
T Consensus 138 ----------------~~~--------~~~~~~~~LS~G~~qrv~la---ral~-~~p~l---lllDEPt~~LD~~~~-- 184 (258)
T PRK14241 138 ----------------VKD--------RLDKPGGGLSGGQQQRLCIA---RAIA-VEPDV---LLMDEPCSALDPIST-- 184 (258)
T ss_pred ----------------hhh--------HhhCCcccCCHHHHHHHHHH---HHHh-cCCCE---EEEcCCCccCCHHHH--
Confidence 000 01345678999999999888 4444 67777 899999999999994
Q ss_pred HHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHc------CCCCCCCcchHHH
Q 007480 276 REQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALN------KGEIPSTGSLVEV 327 (602)
Q Consensus 276 ~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aIN------sG~vP~~~sl~e~ 327 (602)
..+.+.+.+..+ ...-..+++.. ...-+.+.+-.++ +|.+-..++..+.
T Consensus 185 -~~l~~~l~~~~~--~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~ 240 (258)
T PRK14241 185 -LAIEDLINELKQ--DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKI 240 (258)
T ss_pred -HHHHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHH
Confidence 455666655532 22233444432 2222233444445 5766555555444
No 129
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.52 E-value=5.9e-14 Score=141.24 Aligned_cols=193 Identities=19% Similarity=0.248 Sum_probs=119.2
Q ss_pred cccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeeccccc
Q 007480 53 IRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLDTEGF 128 (602)
Q Consensus 53 L~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~DteG~ 128 (602)
|+++++.+ ++++|+|+||||||||+++|+|. .+++.| |.+.|.++... ....++++++...+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~~~~~--~~~~~~v~q~~~l~ 66 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGL------------AQPTSGGVILEGKQITEP--GPDRMVVFQNYSLL 66 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCEECCCC--ChhheEEecCcccC
Confidence 45677777 89999999999999999999998 478999 99998876431 12347888876433
Q ss_pred cccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCcccH
Q 007480 129 ESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSV 208 (602)
Q Consensus 129 ~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~ 208 (602)
+..++.|++.+..... ..+......
T Consensus 67 ---~~~tv~e~l~~~~~~~-----~~~~~~~~~----------------------------------------------- 91 (230)
T TIGR01184 67 ---PWLTVRENIALAVDRV-----LPDLSKSER----------------------------------------------- 91 (230)
T ss_pred ---CCCCHHHHHHHHHHhc-----ccCCCHHHH-----------------------------------------------
Confidence 2568889887653210 000000000
Q ss_pred HHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 007480 209 QEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVT 287 (602)
Q Consensus 209 ~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~ 287 (602)
.+.+++.++.++. ...++.+.++|++++++..++ .+++ ..|.+ .+.|||+++||+... ..+.+.+.+..
T Consensus 92 ~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la---~al~-~~p~l---llLDEPt~gLD~~~~---~~l~~~l~~~~ 161 (230)
T TIGR01184 92 RAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIA---RALS-IRPKV---LLLDEPFGALDALTR---GNLQEELMQIW 161 (230)
T ss_pred HHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHH---HHHH-cCCCE---EEEcCCCcCCCHHHH---HHHHHHHHHHH
Confidence 1112222222221 111345678899999998888 4444 67777 789999999999994 45666665554
Q ss_pred CCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcch
Q 007480 288 RPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSL 324 (602)
Q Consensus 288 ~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl 324 (602)
+.....-..+++.. ...-+.+.+-.+++|.+...+++
T Consensus 162 ~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~ 199 (230)
T TIGR01184 162 EEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQI 199 (230)
T ss_pred HhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCc
Confidence 32222234444432 22334455555678877555443
No 130
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=3.7e-14 Score=146.70 Aligned_cols=197 Identities=17% Similarity=0.188 Sum_probs=125.7
Q ss_pred cccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-------ccCcceE
Q 007480 51 ETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-------IDGSRTS 119 (602)
Q Consensus 51 ~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-------~~~~~~~ 119 (602)
.+|+++++.+ ++++|+||||||||||+++|+|+ .++++| |.+.+.++... ..+..++
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl------------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~ 88 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL------------HVPTQGSVRVDDTLITSTSKNKDIKQIRKKVG 88 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEEccccccccCHHHHHhheE
Confidence 5899999888 89999999999999999999998 488999 99998876421 1234689
Q ss_pred EEeeccc-cccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhh
Q 007480 120 VFYLDTE-GFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLI 198 (602)
Q Consensus 120 vvl~Dte-G~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~v 198 (602)
++++++. .+. ..++.||+.+.... ++.....
T Consensus 89 ~~~q~~~~~~~---~~tv~e~l~~~~~~-------~~~~~~~-------------------------------------- 120 (280)
T PRK13649 89 LVFQFPESQLF---EETVLKDVAFGPQN-------FGVSQEE-------------------------------------- 120 (280)
T ss_pred EEeeChhhhhc---cccHHHHHHHHHHH-------cCCCHHH--------------------------------------
Confidence 9999863 222 24788887764321 1110000
Q ss_pred hhccCCcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHH
Q 007480 199 QRDFLQGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRR 276 (602)
Q Consensus 199 vRDf~~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~ 276 (602)
..+.++.+++..+.. ..++.+.++|++++++..++ .+++ .+|.+ .+.|||++.||+...
T Consensus 121 ---------~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la---~al~-~~p~l---llLDEPt~~LD~~~~--- 181 (280)
T PRK13649 121 ---------AEALAREKLALVGISESLFEKNPFELSGGQMRRVAIA---GILA-MEPKI---LVLDEPTAGLDPKGR--- 181 (280)
T ss_pred ---------HHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH---HHHH-cCCCE---EEEeCCcccCCHHHH---
Confidence 011112222222211 11355678999999999888 4444 67777 899999999999994
Q ss_pred HHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 277 EQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 277 ~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
+.+.+.|.+..+. ...-..+++. ....-+.+++-.+++|.+-..++..+.
T Consensus 182 ~~l~~~l~~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 182 KELMTLFKKLHQS-GMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 5566666655322 2233445543 223334455666788887555554444
No 131
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.52 E-value=2.3e-14 Score=133.67 Aligned_cols=176 Identities=22% Similarity=0.289 Sum_probs=127.5
Q ss_pred ccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-ccCcceEEEe
Q 007480 48 EGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-IDGSRTSVFY 122 (602)
Q Consensus 48 eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-~~~~~~~vvl 122 (602)
...-.|.++|+.| +||.++||+|||||||+..+.|.+ ...|+ + +| +|+.++.+..- ..+++++++|
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~L-a~~F~-------~-~G~~~l~~~~l~~lPa~qRq~GiLF 83 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGAL-AGQFS-------C-TGELWLNEQRLDMLPAAQRQIGILF 83 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhc-ccCcc-------e-eeEEEECCeeccccchhhhheeeee
Confidence 3444678888888 999999999999999999999974 33342 3 56 99999887642 3578899999
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
||.-.|+ +.+|.+|+.|++.. .+++...
T Consensus 84 QD~lLFp---hlsVg~Nl~fAlp~--------~~KG~aR----------------------------------------- 111 (213)
T COG4136 84 QDALLFP---HLSVGQNLLFALPA--------TLKGNAR----------------------------------------- 111 (213)
T ss_pred ccccccc---ccccccceEEecCc--------ccccHHH-----------------------------------------
Confidence 9987664 77899999998743 1122211
Q ss_pred CCcccHHHHHHHHHHhCCCC-CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPND-KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKK 281 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~~-~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~ 281 (602)
+.....+|..++.. ..++.++.++++++.+.++- ++ .+..|.. .|.|||.+.||... ++++++
T Consensus 112 ------r~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~---R~-Lla~Pk~---lLLDEPFS~LD~AL---R~qfR~ 175 (213)
T COG4136 112 ------RNAANAALERSGLDGAFHQDPATLSGGQRARVALL---RA-LLAQPKA---LLLDEPFSRLDVAL---RDQFRQ 175 (213)
T ss_pred ------HhhHHHHHHHhccchhhhcChhhcCcchHHHHHHH---HH-HHhCcce---eeeCCchhHHHHHH---HHHHHH
Confidence 22233344444431 12456677888888777665 23 3467877 89999999999988 789999
Q ss_pred HHhhhcCCCccceEeeccH
Q 007480 282 LVASVTRPKIVQGKFLNGN 300 (602)
Q Consensus 282 ~I~~~~~pK~l~g~~ltG~ 300 (602)
.+++..+.-.+....+|+.
T Consensus 176 wVFs~~r~agiPtv~VTHD 194 (213)
T COG4136 176 WVFSEVRAAGIPTVQVTHD 194 (213)
T ss_pred HHHHHHHhcCCCeEEEecc
Confidence 9999888777777777763
No 132
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.51 E-value=5.7e-14 Score=143.86 Aligned_cols=220 Identities=17% Similarity=0.216 Sum_probs=135.1
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCC---cc-eEE
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKT---KG-IWV 104 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~T---kG-Iwi 104 (602)
|++.+++.+.++ ....+|+++++.+ ++++|+|+||||||||++.|+|.. +++ .| |++
T Consensus 3 ~~l~~~nl~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~p~~~~~G~i~~ 66 (262)
T PRK09984 3 TIIRVEKLAKTF----NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI------------TGDKSAGSHIEL 66 (262)
T ss_pred cEEEEeeEEEEe----CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccC------------CCCCCCceEEEE
Confidence 355665543322 2346899999988 899999999999999999999983 443 58 999
Q ss_pred cCcccCcc--------ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhh
Q 007480 105 WGNPVEME--------IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAE 176 (602)
Q Consensus 105 ~~~~~~~~--------~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~ 176 (602)
+|.++... .....+++++++...+ +..++.|++.+.... .
T Consensus 67 ~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~---~~~tv~e~l~~~~~~---------~-------------------- 114 (262)
T PRK09984 67 LGRTVQREGRLARDIRKSRANTGYIFQQFNLV---NRLSVLENVLIGALG---------S-------------------- 114 (262)
T ss_pred CCEecccccccchhHHHHHhheEEEccccccc---cCCcHHHHHHhhhcc---------c--------------------
Confidence 99876321 1134589999886433 356888888764311 0
Q ss_pred hhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccc
Q 007480 177 EFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHL 255 (602)
Q Consensus 177 ~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~ 255 (602)
.|. |.-..++. +....+.++++++..+. ...++.+.++|++++++..++ ++++ ..|.+
T Consensus 115 -------------~~~---~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la---ral~-~~p~l 173 (262)
T PRK09984 115 -------------TPF---WRTCFSWF-TREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIA---RALM-QQAKV 173 (262)
T ss_pred -------------ccc---hhhhcccc-cHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHH---HHHh-cCCCE
Confidence 000 00000000 01112233444444433 112456778999999998888 4444 67877
Q ss_pred hhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHH
Q 007480 256 LRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVE 326 (602)
Q Consensus 256 ~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e 326 (602)
.+.|||+++||+... +.+.+.|.+..+.....-..+++.. +..-+.+.+-.+++|.+...++..+
T Consensus 174 ---lllDEPt~~LD~~~~---~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~ 239 (262)
T PRK09984 174 ---ILADEPIASLDPESA---RIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQ 239 (262)
T ss_pred ---EEecCccccCCHHHH---HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 899999999999994 5666666655432222333444432 3334455666668888866665544
No 133
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=1.1e-13 Score=139.47 Aligned_cols=213 Identities=15% Similarity=0.149 Sum_probs=129.5
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGN 107 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~ 107 (602)
+++..++.+.++ ....+|+++++.+ ++++|+|+||||||||+++|+|. .+++.| |.+.|.
T Consensus 4 ~~l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~p~~G~i~~~g~ 67 (237)
T PRK11614 4 VMLSFDKVSAHY----GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD------------PRATSGRIVFDGK 67 (237)
T ss_pred cEEEEEeEEEee----CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCC------------CCCCCceEEECCE
Confidence 355555433222 2346899999988 89999999999999999999998 478999 999998
Q ss_pred ccCccc----cCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccC
Q 007480 108 PVEMEI----DGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVK 183 (602)
Q Consensus 108 ~~~~~~----~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~ 183 (602)
++.... .+..+++++++..-+ +..++.||+.++... .. ... .++.+..+...++
T Consensus 68 ~~~~~~~~~~~~~~i~~~~q~~~~~---~~~tv~~~l~~~~~~-------~~-~~~-~~~~~~~~l~~~~---------- 125 (237)
T PRK11614 68 DITDWQTAKIMREAVAIVPEGRRVF---SRMTVEENLAMGGFF-------AE-RDQ-FQERIKWVYELFP---------- 125 (237)
T ss_pred ecCCCCHHHHHHhCEEEeccCcccC---CCCcHHHHHHHhhhc-------cC-hhH-HHHHHHHHHHHHH----------
Confidence 764311 134688998886433 345788887664311 00 000 0011111100000
Q ss_pred CcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCC
Q 007480 184 GQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDM 263 (602)
Q Consensus 184 ~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~ 263 (602)
+ +.... +..+.++|+++++...++ .++ +.+|.+ .+.||
T Consensus 126 ---------------------~------l~~~~--------~~~~~~LS~G~~qrl~la---~al-~~~p~i---lllDE 163 (237)
T PRK11614 126 ---------------------R------LHERR--------IQRAGTMSGGEQQMLAIG---RAL-MSQPRL---LLLDE 163 (237)
T ss_pred ---------------------H------HHHHH--------hCchhhCCHHHHHHHHHH---HHH-HhCCCE---EEEcC
Confidence 0 00001 234567899999988887 444 467777 78999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 264 KDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 264 p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
|+++||++.. ..+.+.+.+..+ +...-..+++.. ...-+.+.+-.+++|.+-..++..+..
T Consensus 164 Pt~~LD~~~~---~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 164 PSLGLAPIII---QQIFDTIEQLRE-QGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred ccccCCHHHH---HHHHHHHHHHHH-CCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 9999999994 455555655432 222233444432 223334455556888875555555443
No 134
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.51 E-value=1.4e-14 Score=137.32 Aligned_cols=173 Identities=21% Similarity=0.192 Sum_probs=124.2
Q ss_pred ccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEE
Q 007480 48 EGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSV 120 (602)
Q Consensus 48 eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~v 120 (602)
....+|+++++.| +.++|.||+|||||||+++++.+ .++|.| +.+-|+++..- ..+.+++|
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~L------------isp~~G~l~f~Ge~vs~~~pea~Rq~VsY 81 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASL------------ISPTSGTLLFEGEDVSTLKPEAYRQQVSY 81 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhc------------cCCCCceEEEcCccccccChHHHHHHHHH
Confidence 3456899999988 99999999999999999999998 599999 88889988642 24678899
Q ss_pred EeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhh
Q 007480 121 FYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQR 200 (602)
Q Consensus 121 vl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvR 200 (602)
+.|-+..|++ |++||++|.-.. .|-. .+.++..++..-+++.+
T Consensus 82 ~~Q~paLfg~----tVeDNlifP~~~-------r~rr--~dr~aa~~llar~~l~~------------------------ 124 (223)
T COG4619 82 CAQTPALFGD----TVEDNLIFPWQI-------RNRR--PDRAAALDLLARFALPD------------------------ 124 (223)
T ss_pred HHcCcccccc----chhhccccchHH-------hccC--CChHHHHHHHHHcCCch------------------------
Confidence 9998877864 899999997543 3311 12222222211111100
Q ss_pred ccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHH
Q 007480 201 DFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLK 280 (602)
Q Consensus 201 Df~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~ 280 (602)
..-++.+.++|++.+++.++..+ .- --|.+ .|+||+++.||+.-. ..+.
T Consensus 125 ---------------------~~L~k~it~lSGGE~QriAliR~--Lq--~~P~I---LLLDE~TsALD~~nk---r~ie 173 (223)
T COG4619 125 ---------------------SILTKNITELSGGEKQRIALIRN--LQ--FMPKI---LLLDEITSALDESNK---RNIE 173 (223)
T ss_pred ---------------------hhhcchhhhccchHHHHHHHHHH--hh--cCCce---EEecCchhhcChhhH---HHHH
Confidence 11146788899999998887632 11 23777 889999999999984 4566
Q ss_pred HHHhhhcCCCccceEeeccH
Q 007480 281 KLVASVTRPKIVQGKFLNGN 300 (602)
Q Consensus 281 ~~I~~~~~pK~l~g~~ltG~ 300 (602)
++|++..+++.+.-.-+|+.
T Consensus 174 ~mi~~~v~~q~vAv~WiTHd 193 (223)
T COG4619 174 EMIHRYVREQNVAVLWITHD 193 (223)
T ss_pred HHHHHHhhhhceEEEEEecC
Confidence 67777777888777777773
No 135
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.51 E-value=3.4e-14 Score=152.11 Aligned_cols=192 Identities=18% Similarity=0.216 Sum_probs=129.4
Q ss_pred cccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc-------cccCcceEEEee
Q 007480 55 RITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM-------EIDGSRTSVFYL 123 (602)
Q Consensus 55 ~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~-------~~~~~~~~vvl~ 123 (602)
++++.+ ++++|+|||||||||||++|+|+ .++++| |++.+.++.. ...+..+++++|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl------------~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q 83 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGL------------TRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQ 83 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEEccccccccccchhhCCEEEEcC
Confidence 678777 89999999999999999999998 488999 9999877532 112457899999
Q ss_pred ccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccC
Q 007480 124 DTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFL 203 (602)
Q Consensus 124 DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~ 203 (602)
|...+ +..++.||+.|++.. ...+.++++...+++.
T Consensus 84 ~~~l~---~~~tv~enl~~~~~~-------------~~~~~~~~~l~~~gl~---------------------------- 119 (352)
T PRK11144 84 DARLF---PHYKVRGNLRYGMAK-------------SMVAQFDKIVALLGIE---------------------------- 119 (352)
T ss_pred CcccC---CCCcHHHHHHhhhhh-------------hhHHHHHHHHHHcCCc----------------------------
Confidence 87544 467899998775311 0112222222222211
Q ss_pred CcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHH
Q 007480 204 QGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLV 283 (602)
Q Consensus 204 ~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I 283 (602)
+..++.+.++|++++++..++ +++. ..|.+ .+.|||++.||+... +.+.+.+
T Consensus 120 ------------------~~~~~~~~~LSgGq~qRvala---raL~-~~p~l---lLLDEPts~LD~~~~---~~l~~~L 171 (352)
T PRK11144 120 ------------------PLLDRYPGSLSGGEKQRVAIG---RALL-TAPEL---LLMDEPLASLDLPRK---RELLPYL 171 (352)
T ss_pred ------------------hhhhCCcccCCHHHHHHHHHH---HHHH-cCCCE---EEEcCCcccCCHHHH---HHHHHHH
Confidence 011345678899999999888 4444 67877 899999999999994 4566666
Q ss_pred hhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHHhH
Q 007480 284 ASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVFNK 330 (602)
Q Consensus 284 ~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~n~ 330 (602)
.+..+.....-..+|+.. .+..+.+.+-.+++|.+-..++..+..+.
T Consensus 172 ~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~ 219 (352)
T PRK11144 172 ERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWAS 219 (352)
T ss_pred HHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhC
Confidence 555432233335566643 33344566667789998777777666543
No 136
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.51 E-value=5.5e-14 Score=150.55 Aligned_cols=193 Identities=15% Similarity=0.170 Sum_probs=126.4
Q ss_pred cccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-------ccCcceEEEee
Q 007480 55 RITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-------IDGSRTSVFYL 123 (602)
Q Consensus 55 ~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-------~~~~~~~vvl~ 123 (602)
++++.+ ++++|+|||||||||||++|+|+ .+++.| |.+.+.++... ..+..+++++|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl------------~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q 82 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGL------------TRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQ 82 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEECccCccccccchhhCCeEEEec
Confidence 788777 89999999999999999999998 478999 99998776321 12456899999
Q ss_pred ccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccC
Q 007480 124 DTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFL 203 (602)
Q Consensus 124 DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~ 203 (602)
+..-+ +..++.||+.|++.. +. ....++.+
T Consensus 83 ~~~l~---~~~tv~enl~~~~~~-------~~--~~~~~~~~-------------------------------------- 112 (354)
T TIGR02142 83 EARLF---PHLSVRGNLRYGMKR-------AR--PSERRISF-------------------------------------- 112 (354)
T ss_pred CCccC---CCCcHHHHHHHHhhc-------cC--hhHHHHHH--------------------------------------
Confidence 86443 356899998875421 00 00001112
Q ss_pred CcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 007480 204 QGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 204 ~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~ 282 (602)
++.++.++. ...++.+.++|++++++..++ .+++ .+|.+ .+.|||++.||+... +.+.+.
T Consensus 113 ---------~~~l~~~gL~~~~~~~~~~LSgGqkqRvalA---raL~-~~p~l---llLDEPts~LD~~~~---~~l~~~ 173 (354)
T TIGR02142 113 ---------ERVIELLGIGHLLGRLPGRLSGGEKQRVAIG---RALL-SSPRL---LLMDEPLAALDDPRK---YEILPY 173 (354)
T ss_pred ---------HHHHHHcCChhHhcCChhhCCHHHHHHHHHH---HHHH-cCCCE---EEEcCCCcCCCHHHH---HHHHHH
Confidence 222222221 112456678999999999988 4444 67877 899999999999994 566666
Q ss_pred HhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 283 VASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 283 I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
+.+..+.....-..+|+.. .+..+.+.+-.+++|.+-..++..+..
T Consensus 174 L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 174 LERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 6655432223334555532 233344566667888876666655543
No 137
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.51 E-value=7.3e-15 Score=142.81 Aligned_cols=208 Identities=14% Similarity=0.214 Sum_probs=145.7
Q ss_pred ccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc----cCcceE
Q 007480 48 EGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI----DGSRTS 119 (602)
Q Consensus 48 eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~----~~~~~~ 119 (602)
...++++++++.| ++|++.||||+||||..+++.|+ .+++.| |++.+.++...+ .+-.++
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Gl------------v~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGL------------VRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEE------------EecCCceEEECCcccccCChHHHhhcCcc
Confidence 3456889999988 99999999999999999999999 489999 999999886532 345689
Q ss_pred EEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccc--hhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhh
Q 007480 120 VFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLP--ETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWL 197 (602)
Q Consensus 120 vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~--~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~ 197 (602)
|+.|++.-|. .+||.||+...+-. .+.. ...++..++.|+.-++++.
T Consensus 83 YLpQE~SIFr---~LtV~dNi~~vlE~-------~~~d~~~~~~~~~l~~LL~ef~i~h--------------------- 131 (243)
T COG1137 83 YLPQEASIFR---KLTVEDNIMAVLEI-------REKDLKKAERKEELDALLEEFHITH--------------------- 131 (243)
T ss_pred cccccchHhh---cCcHHHHHHHHHhh-------hhcchhHHHHHHHHHHHHHHhchHH---------------------
Confidence 9999987775 67999999877654 2211 1122233444443333221
Q ss_pred hhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHH
Q 007480 198 IQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRRE 277 (602)
Q Consensus 198 vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~ 277 (602)
..+....++|++.+....++ ++.+ ..|.. .|+|||.++.||..+..
T Consensus 132 -------------------------lr~~~a~sLSGGERRR~EIA---RaLa-~~P~f---iLLDEPFAGVDPiaV~d-- 177 (243)
T COG1137 132 -------------------------LRDSKAYSLSGGERRRVEIA---RALA-ANPKF---ILLDEPFAGVDPIAVID-- 177 (243)
T ss_pred -------------------------HhcCcccccccchHHHHHHH---HHHh-cCCCE---EEecCCccCCCchhHHH--
Confidence 11233456788888877777 3333 57888 89999999999999554
Q ss_pred HHHHHHhhhcCCCccceEeeccHHHHHH--HHHHHHHHcCCCCCCCcchHHHHhHHHHHH
Q 007480 278 QLKKLVASVTRPKIVQGKFLNGNEFVAF--MEQILEALNKGEIPSTGSLVEVFNKGILER 335 (602)
Q Consensus 278 ~L~~~I~~~~~pK~l~g~~ltG~~l~~l--v~~yv~aINsG~vP~~~sl~e~~n~~av~~ 335 (602)
++++|..+. .+.+ |..+|.+..-+. +.+.+..|..|++-..++..++.++..+.+
T Consensus 178 -Iq~iI~~L~-~rgi-GvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~~Vr~ 234 (243)
T COG1137 178 -IQRIIKHLK-DRGI-GVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDVRR 234 (243)
T ss_pred -HHHHHHHHH-hCCc-eEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcChhhhh
Confidence 444454442 2222 677777544332 456677789999999999999887665544
No 138
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.51 E-value=7e-14 Score=143.84 Aligned_cols=201 Identities=16% Similarity=0.214 Sum_probs=122.3
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc---cCcceEEEe
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI---DGSRTSVFY 122 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~---~~~~~~vvl 122 (602)
..+|+++++.+ ++++|+|||||||||||++|+|. .+++.| |.+.+.++.... ....+++++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 93 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGM------------IEPTSGELLIDDHPLHFGDYSYRSQRIRMIF 93 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCC------------CCCCCCEEEECCEECCCCchhhHhccEEEEe
Confidence 45899999988 89999999999999999999998 488999 999988764211 124688998
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
+++..+. .+..++.+++.+.+.. +.....
T Consensus 94 q~~~~~~-~~~~tv~~~l~~~~~~-------~~~~~~------------------------------------------- 122 (267)
T PRK15112 94 QDPSTSL-NPRQRISQILDFPLRL-------NTDLEP------------------------------------------- 122 (267)
T ss_pred cCchhhc-CcchhHHHHHHHHHHh-------ccCCCH-------------------------------------------
Confidence 8864211 1234566665543321 000000
Q ss_pred CCcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLK 280 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~ 280 (602)
....+.++++++.++.. ..+..+.++|+++++...++ .+++ ..|.+ .+.|||++.||+... ..+.
T Consensus 123 ---~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la---ral~-~~p~l---llLDEPt~~LD~~~~---~~l~ 189 (267)
T PRK15112 123 ---EQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA---RALI-LRPKV---IIADEALASLDMSMR---SQLI 189 (267)
T ss_pred ---HHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH---HHHH-hCCCE---EEEcCCcccCCHHHH---HHHH
Confidence 00112223333333321 11345678899999998888 4544 67777 899999999999984 4566
Q ss_pred HHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHH
Q 007480 281 KLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVE 326 (602)
Q Consensus 281 ~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e 326 (602)
+.+.+..+.....-..+++.. ...-+.+.+-.|++|.+-..++..+
T Consensus 190 ~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 236 (267)
T PRK15112 190 NLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTAD 236 (267)
T ss_pred HHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 666655432222233444432 2222334444557787644444333
No 139
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=9.1e-14 Score=141.21 Aligned_cols=203 Identities=19% Similarity=0.236 Sum_probs=125.9
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccC----CCcc-eEEcCcccCcc---ccCcce
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDT----KTKG-IWVWGNPVEME---IDGSRT 118 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~----~TkG-Iwi~~~~~~~~---~~~~~~ 118 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|.. .+ +++| |++.|.++... ..+..+
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-----------~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 84 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLI-----------ELYPEARVSGEVYLDGQDIFKMDVIELRRRV 84 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccC-----------CCCCCCCCceEEEECCEECCcCCHHHHhccE
Confidence 45899999988 899999999999999999999983 22 4799 99999876421 123568
Q ss_pred EEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccc--hhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchh
Q 007480 119 SVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLP--ETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVW 196 (602)
Q Consensus 119 ~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~--~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw 196 (602)
++++|++..+ +..++.||+.++... +... .....+.+.++...+++.+.
T Consensus 85 ~~v~q~~~~~---~~~tv~enl~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~l~~~------------------- 135 (250)
T PRK14247 85 QMVFQIPNPI---PNLSIFENVALGLKL-------NRLVKSKKELQERVRWALEKAQLWDE------------------- 135 (250)
T ss_pred EEEeccCccC---CCCcHHHHHHHHHHh-------ccccCCHHHHHHHHHHHHHHcCCCcc-------------------
Confidence 9999986433 356889998775422 1110 00001112222221111000
Q ss_pred hhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHH
Q 007480 197 LIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRR 276 (602)
Q Consensus 197 ~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~ 276 (602)
++ ...++.+.++|++++++..++ .+++ ..|.+ .+.|||+++||+.. .
T Consensus 136 ---------------~~--------~~~~~~~~~LSgG~~qrv~la---ral~-~~p~l---llLDEP~~~LD~~~---~ 182 (250)
T PRK14247 136 ---------------VK--------DRLDAPAGKLSGGQQQRLCIA---RALA-FQPEV---LLADEPTANLDPEN---T 182 (250)
T ss_pred ---------------hh--------hhhcCCcccCCHHHHHHHHHH---HHHh-cCCCE---EEEcCCCccCCHHH---H
Confidence 00 011345678999999998888 4444 67777 78999999999999 4
Q ss_pred HHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 277 EQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 277 ~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
..+.+.+.+..+ ...-..+++.. ...-+.+.+-.+++|.+-..++..+.
T Consensus 183 ~~l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 183 AKIESLFLELKK--DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 566666666532 22223444432 22223455556688887555555444
No 140
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=4.3e-14 Score=146.22 Aligned_cols=201 Identities=16% Similarity=0.201 Sum_probs=126.9
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEEEe
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSVFY 122 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~vvl 122 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|. .++++| |.+.|+++... .....+++++
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 87 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL------------FEEFEGKVKIDGELLTAENVWNLRRKIGMVF 87 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC------------CCCCCCEEEECCEECCcCCHHHHhcceEEEE
Confidence 34899999888 89999999999999999999998 488999 99998876421 1245689999
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
+|+..+. ...++.||+.+.... .... ...
T Consensus 88 q~~~~~~--~~~tv~eni~~~~~~-------~~~~----~~~-------------------------------------- 116 (277)
T PRK13642 88 QNPDNQF--VGATVEDDVAFGMEN-------QGIP----REE-------------------------------------- 116 (277)
T ss_pred ECHHHhh--ccCCHHHHHHhhHHH-------cCCC----HHH--------------------------------------
Confidence 9875321 245788888664321 1100 000
Q ss_pred CCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKK 281 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~ 281 (602)
..+.++.+++.++. ...++.+.++|+++++...++ ++++ .+|.+ .+.|||+++||+... ..+.+
T Consensus 117 -----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lA---raL~-~~p~l---lllDEPt~~LD~~~~---~~l~~ 181 (277)
T PRK13642 117 -----MIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVA---GIIA-LRPEI---IILDESTSMLDPTGR---QEIMR 181 (277)
T ss_pred -----HHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHH---HHHH-cCCCE---EEEeCCcccCCHHHH---HHHHH
Confidence 01112222222221 111345678899999998888 4444 67777 789999999999994 56666
Q ss_pred HHhhhcCCCccceEeeccHHHHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 282 LVASVTRPKIVQGKFLNGNEFVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 282 ~I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
.+.+..+.....-..+++..-.....+.+-.+++|.+-..++..+..
T Consensus 182 ~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 182 VIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 66655432233334555532221124455555788775555554443
No 141
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=5.3e-14 Score=149.13 Aligned_cols=223 Identities=15% Similarity=0.152 Sum_probs=138.2
Q ss_pred EEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcc
Q 007480 33 IVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNP 108 (602)
Q Consensus 33 lv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~ 108 (602)
++.+++.+..|.-......+|+++|+.+ ++++|+|+||||||||++.|+|+.. + ...++.| |++.|++
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~-------~-~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLID-------Y-PGRVMAEKLEFNGQD 74 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-------C-CCCCcceEEEECCEE
Confidence 4555554433321111246899999999 8999999999999999999999841 0 0014789 9999987
Q ss_pred cCccc-------cCcceEEEeecccc-ccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhc
Q 007480 109 VEMEI-------DGSRTSVFYLDTEG-FESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYG 180 (602)
Q Consensus 109 ~~~~~-------~~~~~~vvl~DteG-~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~ 180 (602)
+.... .+..+++++||+.. + .+..++.+++...+... .+.......+.+
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l--~p~~~v~~~i~~~l~~~------~~~~~~~~~~~~--------------- 131 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSL--NPCYTVGFQIMEAIKVH------QGGNKKTRRQRA--------------- 131 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhc--CCcCCHHHHHHHHHHHh------cCCCHHHHHHHH---------------
Confidence 64311 12468999999742 3 23556666655543220 011111112222
Q ss_pred ccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCC----CCCCchhhhhHHHHHHhhcCCCcEEEccCccch
Q 007480 181 RVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDK----GDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLL 256 (602)
Q Consensus 181 ~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~----~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~ 256 (602)
.++|+.++... .++.+.++|++++++..++ .+++ ..|.+
T Consensus 132 --------------------------------~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iA---rAL~-~~P~l- 174 (326)
T PRK11022 132 --------------------------------IDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIA---MAIA-CRPKL- 174 (326)
T ss_pred --------------------------------HHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHH---HHHH-hCCCE-
Confidence 22333322210 1345678999999999888 4444 67887
Q ss_pred hcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 257 RTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 257 ~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
.+.|||++.||+.... ++.+.+.++.+.....-..+|+. ..+..+.+.+-.+..|.+-..++..+..
T Consensus 175 --lilDEPts~LD~~~~~---~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 175 --LIADEPTTALDVTIQA---QIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred --EEEeCCCCCCCHHHHH---HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 8999999999999954 55555555533233444566664 3444556667777889886666554443
No 142
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.51 E-value=5.3e-14 Score=157.36 Aligned_cols=218 Identities=11% Similarity=0.137 Sum_probs=138.6
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGN 107 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~ 107 (602)
|++.+++.+.+| + ...+|+++++.+ ++++|+||||||||||+++|+|. .+++.| |++.|.
T Consensus 4 ~~l~~~~l~~~~--~--~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl------------~~p~~G~i~~~g~ 67 (510)
T PRK09700 4 PYISMAGIGKSF--G--PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI------------HEPTKGTITINNI 67 (510)
T ss_pred ceEEEeeeEEEc--C--CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC------------cCCCccEEEECCE
Confidence 456666543333 2 345899999988 89999999999999999999998 478999 999998
Q ss_pred ccCccc----cCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccC
Q 007480 108 PVEMEI----DGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVK 183 (602)
Q Consensus 108 ~~~~~~----~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~ 183 (602)
++.... .+..+++++|+...+. ..++.|++.++.... ...++.
T Consensus 68 ~i~~~~~~~~~~~~i~~v~q~~~~~~---~~tv~e~l~~~~~~~---~~~~~~--------------------------- 114 (510)
T PRK09700 68 NYNKLDHKLAAQLGIGIIYQELSVID---ELTVLENLYIGRHLT---KKVCGV--------------------------- 114 (510)
T ss_pred ECCCCCHHHHHHCCeEEEeecccccC---CCcHHHHhhhccccc---cccccc---------------------------
Confidence 764311 1246899999865432 457888876532100 000000
Q ss_pred CcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCC
Q 007480 184 GQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCD 262 (602)
Q Consensus 184 ~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d 262 (602)
+ . + +.....+.++++|+.++. ...++.+.++|++++++..++ .+++ ..|.+ .+.|
T Consensus 115 -------~--~---~-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia---~al~-~~p~l---llLD 170 (510)
T PRK09700 115 -------N--I---I-----DWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIA---KTLM-LDAKV---IIMD 170 (510)
T ss_pred -------c--c---c-----CHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHH---HHHh-cCCCE---EEEe
Confidence 0 0 0 001122344555555543 223567889999999999998 4554 67777 8999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHH
Q 007480 263 MKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVE 326 (602)
Q Consensus 263 ~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e 326 (602)
||++.||+... ..+.+.|.+..+ +...-..+++. .+...+.+.+-.+++|.+...++..+
T Consensus 171 EPt~~LD~~~~---~~l~~~l~~l~~-~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 171 EPTSSLTNKEV---DYLFLIMNQLRK-EGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred CCCCCCCHHHH---HHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhh
Confidence 99999999994 455666655532 22233455553 33334455666668888755554443
No 143
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.51 E-value=6.5e-14 Score=143.85 Aligned_cols=203 Identities=21% Similarity=0.192 Sum_probs=126.1
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEEEe
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSVFY 122 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~vvl 122 (602)
..+|+++++.+ ++++|+|||||||||||++|+|. .+++.| |++.|.++... .....+++++
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 87 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL------------MTPAHGHVWLDGEHIQHYASKEVARRIGLLA 87 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCC------------CCCCCcEEEECCEEhhhCCHHHHhhheEEee
Confidence 45899999988 89999999999999999999998 478899 99998765421 1134689999
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
++...+. ..++.|++.+.... ..-..+...
T Consensus 88 q~~~~~~---~~tv~~~~~~~~~~---~~~~~~~~~-------------------------------------------- 117 (265)
T PRK10253 88 QNATTPG---DITVQELVARGRYP---HQPLFTRWR-------------------------------------------- 117 (265)
T ss_pred ccCcCCC---CCcHHHHHHhCccc---ccccccCCC--------------------------------------------
Confidence 9865442 45777776553210 000000000
Q ss_pred CCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKK 281 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~ 281 (602)
...++.++.+++.++. ...++.+.++|+++++...++ .+++ .+|.+ .+.|||+++||+... +.+.+
T Consensus 118 ---~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~la---ral~-~~p~l---lllDEPt~gLD~~~~---~~l~~ 184 (265)
T PRK10253 118 ---KEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIA---MVLA-QETAI---MLLDEPTTWLDISHQ---IDLLE 184 (265)
T ss_pred ---HHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHH---HHHh-cCCCE---EEEeCccccCCHHHH---HHHHH
Confidence 0111223333333322 112456778999999988887 4444 67777 889999999999994 45666
Q ss_pred HHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 282 LVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 282 ~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
.+.+..+.....-..+++.. ...-+.+.+-.+++|.+...++..+.
T Consensus 185 ~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 185 LLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 66555432222233444432 22223344445588887555554444
No 144
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=4.8e-14 Score=146.70 Aligned_cols=200 Identities=16% Similarity=0.113 Sum_probs=123.7
Q ss_pred cccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc--------cccCcce
Q 007480 51 ETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM--------EIDGSRT 118 (602)
Q Consensus 51 ~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~--------~~~~~~~ 118 (602)
.+|+++++.+ ++++|+|+||||||||+++|+|. .++++| |++.+.++.. ...+..+
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i 92 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL------------IISETGQTIVGDYAIPANLKKIKEVKRLRKEI 92 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCceEEECCEEccccccccccHHHHhccE
Confidence 4899999988 89999999999999999999998 488999 9999877531 1123468
Q ss_pred EEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhh
Q 007480 119 SVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLI 198 (602)
Q Consensus 119 ~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~v 198 (602)
+++++++.... . ..++.||+.|+... .+.......+
T Consensus 93 ~~v~q~~~~~~-~-~~tv~enl~~~~~~-------~~~~~~~~~~----------------------------------- 128 (289)
T PRK13645 93 GLVFQFPEYQL-F-QETIEKDIAFGPVN-------LGENKQEAYK----------------------------------- 128 (289)
T ss_pred EEEEeCcchhh-h-hhHHHHHHHHHHHH-------cCCCHHHHHH-----------------------------------
Confidence 99999863211 1 23777887664321 1100000001
Q ss_pred hhccCCcccHHHHHHHHHHhCCC--CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHH
Q 007480 199 QRDFLQGKSVQEMVHDALQRVPN--DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRR 276 (602)
Q Consensus 199 vRDf~~g~t~~eyLe~aL~~~~~--~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~ 276 (602)
.++..++..+. ...++.+.++|++++++..++ .+++ .+|.+ .+.|||++.||+...
T Consensus 129 ------------~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~la---ral~-~~p~l---LlLDEPt~~LD~~~~--- 186 (289)
T PRK13645 129 ------------KVPELLKLVQLPEDYVKRSPFELSGGQKRRVALA---GIIA-MDGNT---LVLDEPTGGLDPKGE--- 186 (289)
T ss_pred ------------HHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHH---HHHH-hCCCE---EEEeCCcccCCHHHH---
Confidence 11112222111 011355678999999998888 4544 67777 899999999999994
Q ss_pred HHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 277 EQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 277 ~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
+.+.+.+.+..+.....-..+++.. ...-+.+.+-.+++|.+-..++..+..
T Consensus 187 ~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 187 EDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 4566666555432222233444432 222233445556788875555554443
No 145
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.51 E-value=5.5e-14 Score=157.36 Aligned_cols=208 Identities=15% Similarity=0.211 Sum_probs=134.5
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGN 107 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~ 107 (602)
|++.+++.+.++ . ...+|+++++.+ ++++|+|||||||||||++|+|. .++++| |++.|.
T Consensus 10 ~~l~~~~l~~~~--~--~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~ 73 (510)
T PRK15439 10 PLLCARSISKQY--S--GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI------------VPPDSGTLEIGGN 73 (510)
T ss_pred ceEEEEeEEEEe--C--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCE
Confidence 466666543333 2 346899999988 89999999999999999999998 478999 999987
Q ss_pred ccCccc----cCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccC
Q 007480 108 PVEMEI----DGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVK 183 (602)
Q Consensus 108 ~~~~~~----~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~ 183 (602)
++.... ....+++++|+...+ +..++.|++.+.+.. ....++.+
T Consensus 74 ~~~~~~~~~~~~~~i~~v~q~~~~~---~~~tv~e~l~~~~~~-----------~~~~~~~~------------------ 121 (510)
T PRK15439 74 PCARLTPAKAHQLGIYLVPQEPLLF---PNLSVKENILFGLPK-----------RQASMQKM------------------ 121 (510)
T ss_pred ECCCCCHHHHHhCCEEEEeccCccC---CCCcHHHHhhccccc-----------chHHHHHH------------------
Confidence 764211 124588999987543 356888887663210 00001111
Q ss_pred CcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCC
Q 007480 184 GQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCD 262 (602)
Q Consensus 184 ~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d 262 (602)
+++|+.++. ...++.+.++|++++++..++ .++ +..|.+ .+.|
T Consensus 122 -----------------------------~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la---~aL-~~~p~l---llLD 165 (510)
T PRK15439 122 -----------------------------KQLLAALGCQLDLDSSAGSLEVADRQIVEIL---RGL-MRDSRI---LILD 165 (510)
T ss_pred -----------------------------HHHHHHcCCCccccCChhhCCHHHHHHHHHH---HHH-HcCCCE---EEEE
Confidence 222222221 111456778999999999988 444 467887 8999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 263 MKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 263 ~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
||++.||+... ..+.+++.+..+ +...-..+++. .....+.+.+-.+++|.+-..++..+.
T Consensus 166 EPt~~LD~~~~---~~l~~~l~~~~~-~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 166 EPTASLTPAET---ERLFSRIRELLA-QGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred CCCCCCCHHHH---HHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 99999999994 556666665532 22223345553 333344455666788887555554443
No 146
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.50 E-value=7.8e-14 Score=142.31 Aligned_cols=203 Identities=16% Similarity=0.152 Sum_probs=124.4
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEEEe
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSVFY 122 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~vvl 122 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|. .+++.| |++.+.++... .....+++++
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARL------------LTPQSGTVFLGDKPISMLSSRQLARRLALLP 82 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCC------------cCCCCcEEEECCEEhHHCCHHHHhhheEEec
Confidence 45899999888 89999999999999999999998 478999 99998765321 1134689999
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
++...+ +..++.|++.++..... -.++.....
T Consensus 83 q~~~~~---~~~tv~~~i~~~~~~~~---~~~~~~~~~------------------------------------------ 114 (255)
T PRK11231 83 QHHLTP---EGITVRELVAYGRSPWL---SLWGRLSAE------------------------------------------ 114 (255)
T ss_pred ccCCCC---CCccHHHHHHhccchhh---hhccCCCHH------------------------------------------
Confidence 986433 24578888766421100 000000000
Q ss_pred CCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKK 281 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~ 281 (602)
..+.++.+++.++. ...++.+.++|+++++...++ .+++ .+|.+ .+.|||+++||++.. +.+.+
T Consensus 115 -----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la---ral~-~~p~l---lllDEP~~~LD~~~~---~~l~~ 179 (255)
T PRK11231 115 -----DNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLA---MVLA-QDTPV---VLLDEPTTYLDINHQ---VELMR 179 (255)
T ss_pred -----HHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHH---HHHh-cCCCE---EEEcCCcccCCHHHH---HHHHH
Confidence 11112223332221 111345678899999888887 4443 67777 789999999999994 56666
Q ss_pred HHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 282 LVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 282 ~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
.+.+..+ +...-..+|+.. ...-+.+++-.+++|.+-..++..+..
T Consensus 180 ~l~~l~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 180 LMRELNT-QGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred HHHHHHH-CCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 6655432 222233444422 222234455556788775444444443
No 147
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.50 E-value=5.3e-14 Score=139.24 Aligned_cols=184 Identities=20% Similarity=0.226 Sum_probs=115.8
Q ss_pred cccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-ccCcceEEEeecccccc
Q 007480 55 RITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-IDGSRTSVFYLDTEGFE 129 (602)
Q Consensus 55 ~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-~~~~~~~vvl~DteG~~ 129 (602)
++++.+ ++++|+||||||||||+++|+|. .++++| |++.+.++... .....++++++|...+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl------------~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~- 82 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGF------------ETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLF- 82 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCEEcCcCCHhHccEEEEecccccC-
Confidence 777777 89999999999999999999998 478999 99998876421 1235689999987544
Q ss_pred ccCCCCchhHHHHHHHhhhhhhhhcccc-hhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCcccH
Q 007480 130 SIGKSNVYDDRIFALATVMSSVLIYNLP-ETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSV 208 (602)
Q Consensus 130 ~~~~~tv~d~~ifaLa~LLSS~~IyN~~-~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~ 208 (602)
+..++.||+.++... +.. ....++.+
T Consensus 83 --~~~tv~enl~~~~~~--------~~~~~~~~~~~~------------------------------------------- 109 (211)
T cd03298 83 --AHLTVEQNVGLGLSP--------GLKLTAEDRQAI------------------------------------------- 109 (211)
T ss_pred --CCCcHHHHHhccccc--------ccCccHHHHHHH-------------------------------------------
Confidence 345888887654311 000 00011112
Q ss_pred HHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 007480 209 QEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVT 287 (602)
Q Consensus 209 ~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~ 287 (602)
.++++..+. ...++.+.++|+++++...++ .++ +.+|.+ .+.|||++.||++. .+.+.+.+.+..
T Consensus 110 ----~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia---~al-~~~p~l---lllDEP~~~LD~~~---~~~l~~~l~~~~ 175 (211)
T cd03298 110 ----EVALARVGLAGLEKRLPGELSGGERQRVALA---RVL-VRDKPV---LLLDEPFAALDPAL---RAEMLDLVLDLH 175 (211)
T ss_pred ----HHHHHHcCCHHHHhCCcccCCHHHHHHHHHH---HHH-hcCCCE---EEEcCCcccCCHHH---HHHHHHHHHHHH
Confidence 222222221 011344567899999988887 444 367777 88999999999999 456666666554
Q ss_pred CCCccceEeeccHH-HHHHHHHHHHHHcCCCC
Q 007480 288 RPKIVQGKFLNGNE-FVAFMEQILEALNKGEI 318 (602)
Q Consensus 288 ~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~v 318 (602)
+.+...-..+++.. ...-+.+.+-.+++|.+
T Consensus 176 ~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 207 (211)
T cd03298 176 AETKMTVLMVTHQPEDAKRLAQRVVFLDNGRI 207 (211)
T ss_pred HhcCCEEEEEecCHHHHHhhhCEEEEEECCEE
Confidence 32222333455422 22233344545566654
No 148
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.50 E-value=7.4e-14 Score=143.44 Aligned_cols=219 Identities=16% Similarity=0.109 Sum_probs=132.5
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGN 107 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~ 107 (602)
+++.+++.+. .+. ...+|+++++.+ ++++|+|+||||||||+++|+|. .++++| |.+.+.
T Consensus 10 ~~l~i~~l~~--~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~ 73 (265)
T PRK10575 10 TTFALRNVSF--RVP--GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH------------QPPSEGEILLDAQ 73 (265)
T ss_pred ceEEEeeEEE--EEC--CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCC------------CCCCCCEEEECCE
Confidence 4566665433 222 346899999988 89999999999999999999998 478999 999887
Q ss_pred ccCcc---ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCC
Q 007480 108 PVEME---IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKG 184 (602)
Q Consensus 108 ~~~~~---~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~ 184 (602)
++... .....+++++++...+ +..++.|++.++.... ....+...
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~~~---~~~tv~e~l~~~~~~~------~~~~~~~~----------------------- 121 (265)
T PRK10575 74 PLESWSSKAFARKVAYLPQQLPAA---EGMTVRELVAIGRYPW------HGALGRFG----------------------- 121 (265)
T ss_pred ehhhCCHHHHhhheEEeccCCCCC---CCccHHHHHHhCcccc------cccccCCC-----------------------
Confidence 65321 1234688998875433 2457888876543110 00000000
Q ss_pred cccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCC
Q 007480 185 QDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDM 263 (602)
Q Consensus 185 e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~ 263 (602)
....+.++++++.++. ...++.+.++|+++++...++ .+++ ..|.+ .+.||
T Consensus 122 ---------------------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la---ral~-~~p~l---llLDE 173 (265)
T PRK10575 122 ---------------------AADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIA---MLVA-QDSRC---LLLDE 173 (265)
T ss_pred ---------------------HHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHH---HHHh-cCCCE---EEEcC
Confidence 0011122333333322 111345678899999988888 4444 67777 78999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHHh
Q 007480 264 KDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVFN 329 (602)
Q Consensus 264 p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~n 329 (602)
|+++||+... ..+.+.+.+..+.....-..+++.. ...-+.+.+-.+++|.+-..++..+...
T Consensus 174 Pt~~LD~~~~---~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 174 PTSALDIAHQ---VDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred CcccCCHHHH---HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 9999999994 4556666555332222223444432 2222334555668888755555544443
No 149
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.50 E-value=5e-14 Score=146.52 Aligned_cols=200 Identities=19% Similarity=0.175 Sum_probs=129.1
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-------ccCcce
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-------IDGSRT 118 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-------~~~~~~ 118 (602)
..+|+++++.+ ++++|+||||+|||||+++|+|. .++++| |.+.++++... ..+..+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl------------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i 87 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNAL------------LKPSSGTITIAGYHITPETGNKNLKKLRKKV 87 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCcEEEECCEECccccccchHHHHHhce
Confidence 35899999988 89999999999999999999998 488999 99999876321 123468
Q ss_pred EEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhh
Q 007480 119 SVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLI 198 (602)
Q Consensus 119 ~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~v 198 (602)
+++++++.... ...++.|++.|+... +.....
T Consensus 88 g~v~q~~~~~~--~~~tv~e~l~~~~~~-------~~~~~~--------------------------------------- 119 (287)
T PRK13641 88 SLVFQFPEAQL--FENTVLKDVEFGPKN-------FGFSED--------------------------------------- 119 (287)
T ss_pred EEEEeChhhhh--ccchHHHHHHHHHHH-------cCCCHH---------------------------------------
Confidence 99999874211 135788887664321 111000
Q ss_pred hhccCCcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHH
Q 007480 199 QRDFLQGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRR 276 (602)
Q Consensus 199 vRDf~~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~ 276 (602)
...+.++++++.++.. ..++.+.++|++++++..++ .+++ ..|.+ .+.|||+++||+...
T Consensus 120 --------~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~la---ral~-~~p~l---LlLDEPt~gLD~~~~--- 181 (287)
T PRK13641 120 --------EAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIA---GVMA-YEPEI---LCLDEPAAGLDPEGR--- 181 (287)
T ss_pred --------HHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHH---HHHH-cCCCE---EEEECCCCCCCHHHH---
Confidence 1112223333333321 12456778999999999888 5554 66777 799999999999984
Q ss_pred HHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 277 EQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 277 ~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
..+.+.+.+..+ +...-..+++. ..+..+.+.+-.++.|.+-..++..+..
T Consensus 182 ~~l~~~l~~l~~-~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 182 KEMMQLFKDYQK-AGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred HHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 566666665532 22223344542 2333344555566888876555555443
No 150
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.50 E-value=1.6e-13 Score=137.12 Aligned_cols=211 Identities=19% Similarity=0.211 Sum_probs=141.3
Q ss_pred EeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCccc
Q 007480 34 VEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPV 109 (602)
Q Consensus 34 v~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~ 109 (602)
+.+++.+.+| ....+++++++.| ++.|++|+||+||||++++|+|+ .++|.| |.+.|.|+
T Consensus 3 L~ie~vtK~F----g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgl------------le~~~G~I~~~g~~~ 66 (300)
T COG4152 3 LEIEGVTKSF----GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGL------------LEPTEGEITWNGGPL 66 (300)
T ss_pred eEEecchhcc----CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhcc------------CCccCceEEEcCcch
Confidence 3445544444 4567899999988 99999999999999999999999 489999 99999988
Q ss_pred CccccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCccccc
Q 007480 110 EMEIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAF 189 (602)
Q Consensus 110 ~~~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f 189 (602)
... ...+++|+.-. . +.++++++.|.+.|...+ .+++...-...++.
T Consensus 67 ~~~-~~~rIGyLPEE-R--GLy~k~tv~dql~yla~L-------kGm~~~e~~~~~~~---------------------- 113 (300)
T COG4152 67 SQE-IKNRIGYLPEE-R--GLYPKMTVEDQLKYLAEL-------KGMPKAEIQKKLQA---------------------- 113 (300)
T ss_pred hhh-hhhhcccChhh-h--ccCccCcHHHHHHHHHHh-------cCCcHHHHHHHHHH----------------------
Confidence 642 34677887433 3 345689999998885544 33333322222332
Q ss_pred CcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCC
Q 007480 190 EPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEEL 268 (602)
Q Consensus 190 ~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~L 268 (602)
.|+.... ....+.++++|++.+|-..|- ..++..|.+ .++|+|.++|
T Consensus 114 -------------------------wLer~~i~~~~~~kIk~LSKGnqQKIQfi----saviHePeL---lILDEPFSGL 161 (300)
T COG4152 114 -------------------------WLERLEIVGKKTKKIKELSKGNQQKIQFI----SAVIHEPEL---LILDEPFSGL 161 (300)
T ss_pred -------------------------HHHhccccccccchHHHhhhhhhHHHHHH----HHHhcCCCE---EEecCCccCC
Confidence 2332221 111466788888877766554 345688998 8999999999
Q ss_pred CHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHHh
Q 007480 269 DPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVFN 329 (602)
Q Consensus 269 d~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~n 329 (602)
||-- ++-|++.|+++.. ...+-..-++.| -++.+++-+-.+++|+..-.+++..+-+
T Consensus 162 DPVN---~elLk~~I~~lk~-~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 162 DPVN---VELLKDAIFELKE-EGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred Chhh---HHHHHHHHHHHHh-cCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 9998 5577888887632 222222223322 2344666666779998777777665543
No 151
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.49 E-value=1.1e-13 Score=147.08 Aligned_cols=219 Identities=14% Similarity=0.125 Sum_probs=139.1
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCC---Ccc-eEE
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTK---TKG-IWV 104 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~---TkG-Iwi 104 (602)
+++.+++.+..|........+++++++.| ++++|+|+||||||||++.|+|+. ++ +.| |.+
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~------------~p~~~~sG~I~~ 78 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLL------------AANGRIGGSATF 78 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCC------------CCCCCCCeEEEE
Confidence 46777766555533223456899999998 899999999999999999999984 44 489 999
Q ss_pred cCcccCccc-------cCcceEEEeecccc-ccccCCCCchhHHHHHHHhhhhhhhhcc-cchhhhHHHHHHHHHHHhhh
Q 007480 105 WGNPVEMEI-------DGSRTSVFYLDTEG-FESIGKSNVYDDRIFALATVMSSVLIYN-LPETIREADISRLSFAVELA 175 (602)
Q Consensus 105 ~~~~~~~~~-------~~~~~~vvl~DteG-~~~~~~~tv~d~~ifaLa~LLSS~~IyN-~~~~i~e~~l~~L~~~~~L~ 175 (602)
.|.++.... .+..+++++||+.. ++ +..++.+++.+.+.. +. .....
T Consensus 79 ~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~--p~~~v~~~i~~~~~~-------~~~~~~~~--------------- 134 (330)
T PRK09473 79 NGREILNLPEKELNKLRAEQISMIFQDPMTSLN--PYMRVGEQLMEVLML-------HKGMSKAE--------------- 134 (330)
T ss_pred CCEECCcCCHHHHHHHhcCCEEEEEcCchhhcC--CCCCHHHHHHHHHHH-------hcCCCHHH---------------
Confidence 998764311 13579999999742 32 356777776654432 11 10000
Q ss_pred hhhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCC----CCCCchhhhhHHHHHHhhcCCCcEEEcc
Q 007480 176 EEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDK----GDKNIDMVNQIRNSLAIMGDNSTAFSLP 251 (602)
Q Consensus 176 ~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~----~~~~i~~ln~~r~~i~~~f~~~~cf~L~ 251 (602)
..+.+.+.|+.++.+. .++.+.++|++++++..++ .+++ .
T Consensus 135 --------------------------------~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IA---rAL~-~ 178 (330)
T PRK09473 135 --------------------------------AFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIA---MALL-C 178 (330)
T ss_pred --------------------------------HHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHH---HHHH-c
Confidence 0111222222222110 1345678999999999888 4544 6
Q ss_pred CccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 252 QPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 252 ~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
+|.+ .+.|||++.||+.... ++.+.+.++.+.....-..+|+. ..+..+.+.+-.++.|.+-..++..+..
T Consensus 179 ~P~l---lilDEPts~LD~~~~~---~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 179 RPKL---LIADEPTTALDVTVQA---QIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred CCCE---EEEeCCCccCCHHHHH---HHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 7887 8999999999999955 45555544433223334456653 3333455666677889886666655543
No 152
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.49 E-value=4.3e-14 Score=135.34 Aligned_cols=226 Identities=21% Similarity=0.279 Sum_probs=139.6
Q ss_pred EeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCccc
Q 007480 34 VEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPV 109 (602)
Q Consensus 34 v~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~ 109 (602)
+.+++.|.+| ...++|+++++.- .||+|+|.+||||||+|++|.-+ +.|+.| |++.++.+
T Consensus 7 l~v~dlHK~~----G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~L------------E~P~~G~I~v~geei 70 (256)
T COG4598 7 LEVEDLHKRY----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL------------EKPSAGSIRVNGEEI 70 (256)
T ss_pred eehhHHHhhc----ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhh------------cCCCCceEEECCeEE
Confidence 3444444444 5667999998765 89999999999999999999877 689999 99999877
Q ss_pred CccccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhh-hhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccc
Q 007480 110 EMEIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSV-LIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVA 188 (602)
Q Consensus 110 ~~~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~-~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~ 188 (602)
....++ .-.++..|. ..+--+.+-|.=+ +=||.+...+ -|..+.+
T Consensus 71 ~~k~~~-~G~l~~ad~-------------~q~~r~Rs~L~mVFQ~FNLWsHmt-----vLeNViE--------------- 116 (256)
T COG4598 71 RLKRDK-DGQLKPADK-------------RQLQRLRTRLGMVFQHFNLWSHMT-----VLENVIE--------------- 116 (256)
T ss_pred EeeeCC-CCCeeeCCH-------------HHHHHHHHHhhHhhhhcchhHHHH-----HHHHHHh---------------
Confidence 543211 011111111 1111111111111 1134443221 0111111
Q ss_pred cCcccchhhhhhccCCcc---cHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCC
Q 007480 189 FEPAKLVWLIQRDFLQGK---SVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMK 264 (602)
Q Consensus 189 f~P~~flw~vvRDf~~g~---t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p 264 (602)
.|- -++ |. ...+..+..|..++. +..+.++..++++++++.+++ ++.. ..|.. .|.|+|
T Consensus 117 -aPv---hVL------g~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIA---RaLa-meP~v---mLFDEP 179 (256)
T COG4598 117 -APV---HVL------GVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIA---RALA-MEPEV---MLFDEP 179 (256)
T ss_pred -cch---Hhh------cCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHH---HHHh-cCCce---EeecCC
Confidence 121 111 22 334455566666665 334677889999999999998 6665 56776 899999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHHhH
Q 007480 265 DEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVFNK 330 (602)
Q Consensus 265 ~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~n~ 330 (602)
++.|||+.+ .+..+.+..++.. .-+-..+|+.| |+--+.+-|--+.+|.|-..+...+++.+
T Consensus 180 TSALDPElV---gEVLkv~~~LAeE-grTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf~n 242 (256)
T COG4598 180 TSALDPELV---GEVLKVMQDLAEE-GRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGN 242 (256)
T ss_pred cccCCHHHH---HHHHHHHHHHHHh-CCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHhcC
Confidence 999999994 5556666665533 11224677754 66677777777788988888888777643
No 153
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.49 E-value=1.5e-13 Score=138.78 Aligned_cols=204 Identities=14% Similarity=0.118 Sum_probs=124.7
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc----cCcceEEE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI----DGSRTSVF 121 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~----~~~~~~vv 121 (602)
..+|+++++.+ ++++|+||||||||||+++|+|... .++++| |++.+.++.... ....++++
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 82 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPS----------YEVTSGTILFKGQDLLELEPDERARAGLFLA 82 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCC----------CCCCcceEEECCEecCCCCHHHhhccceEee
Confidence 45899999888 8999999999999999999999720 157899 999998764211 12347888
Q ss_pred eeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhc
Q 007480 122 YLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRD 201 (602)
Q Consensus 122 l~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRD 201 (602)
+++...+ +..++.|++.+.+.. +.. +.+. ..
T Consensus 83 ~q~~~~~---~~~t~~~~~~~~~~~-------~~~--------------------------------~~~~-------~~ 113 (243)
T TIGR01978 83 FQYPEEI---PGVSNLEFLRSALNA-------RRS--------------------------------ARGE-------EP 113 (243)
T ss_pred ecccccc---CCcCHHHHHHHHHHH-------hhc--------------------------------cccc-------cc
Confidence 8886544 355777877664321 000 0000 00
Q ss_pred cCCcccHHHHHHHHHHhCCCC--CCCCCch-hhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHH
Q 007480 202 FLQGKSVQEMVHDALQRVPND--KGDKNID-MVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQ 278 (602)
Q Consensus 202 f~~g~t~~eyLe~aL~~~~~~--~~~~~i~-~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~ 278 (602)
+ ......+.++++++..+.. ..++.+. ++|++++++..++ .+ .+..|.+ .+.|||++.||+... +.
T Consensus 114 ~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la---~a-l~~~p~l---lllDEPt~~LD~~~~---~~ 182 (243)
T TIGR01978 114 L-DLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEIL---QM-ALLEPKL---AILDEIDSGLDIDAL---KI 182 (243)
T ss_pred c-cHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHH---HH-HhcCCCE---EEecCCcccCCHHHH---HH
Confidence 0 0001122334444444331 1134454 5999999999888 34 4467877 899999999999994 56
Q ss_pred HHHHHhhhcCCCccceEeeccH-HHHHHH-HHHHHHHcCCCCCCCcch
Q 007480 279 LKKLVASVTRPKIVQGKFLNGN-EFVAFM-EQILEALNKGEIPSTGSL 324 (602)
Q Consensus 279 L~~~I~~~~~pK~l~g~~ltG~-~l~~lv-~~yv~aINsG~vP~~~sl 324 (602)
+.+.+.+..+ +...-..+++. .+...+ .+.+-.+++|.+...++.
T Consensus 183 l~~~l~~~~~-~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (243)
T TIGR01978 183 VAEGINRLRE-PDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDV 229 (243)
T ss_pred HHHHHHHHHH-CCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCH
Confidence 6666665532 22223345542 222223 355556688887555444
No 154
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.49 E-value=1.1e-13 Score=140.61 Aligned_cols=218 Identities=13% Similarity=0.191 Sum_probs=129.3
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCC---Ccc-eEE
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTK---TKG-IWV 104 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~---TkG-Iwi 104 (602)
+++.+++.+. .+. ...+|+++++.+ ++++|+||||||||||+++|+|... .++ +.| |++
T Consensus 4 ~~l~~~~l~~--~~~--~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----------~~p~~~~~G~i~~ 69 (252)
T PRK14239 4 PILQVSDLSV--YYN--KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMND----------LNPEVTITGSIVY 69 (252)
T ss_pred ceEEEEeeEE--EEC--CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccc----------cCCCCCccceEEE
Confidence 3555655432 222 245899999888 8999999999999999999999620 123 589 999
Q ss_pred cCcccCcc-----ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccc-hhhhHHHHHHHHHHHhhhhhh
Q 007480 105 WGNPVEME-----IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLP-ETIREADISRLSFAVELAEEF 178 (602)
Q Consensus 105 ~~~~~~~~-----~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~-~~i~e~~l~~L~~~~~L~~~i 178 (602)
.|.++... ..+..+++++++...+ ..++.||+.+.... +... .....+.+..+...+++.+
T Consensus 70 ~g~~~~~~~~~~~~~~~~i~~v~q~~~~~----~~tv~enl~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~-- 136 (252)
T PRK14239 70 NGHNIYSPRTDTVDLRKEIGMVFQQPNPF----PMSIYENVVYGLRL-------KGIKDKQVLDEAVEKSLKGASIWD-- 136 (252)
T ss_pred CCEECcCcccchHhhhhcEEEEecCCccC----cCcHHHHHHHHHHH-------cCCCcHHHHHHHHHHHHHHcCCch--
Confidence 98876321 1235689999986543 25888988765422 1110 0000111111111111000
Q ss_pred hcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhc
Q 007480 179 YGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRT 258 (602)
Q Consensus 179 ~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~ 258 (602)
.+... .++.+.++|++++++..++ .+++ .+|.+
T Consensus 137 --------------------------------~~~~~--------~~~~~~~LS~G~~qrv~la---ral~-~~p~l--- 169 (252)
T PRK14239 137 --------------------------------EVKDR--------LHDSALGLSGGQQQRVCIA---RVLA-TSPKI--- 169 (252)
T ss_pred --------------------------------hHHHH--------HhcCcccCCHHHHHHHHHH---HHHh-cCCCE---
Confidence 00000 1345678899999998887 4443 67777
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 259 KLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 259 ~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
.+.|||+++||+...+ .+.+.+.+..+ ...-..+++.. ...-+.+.+-.+++|.+-..++..+..
T Consensus 170 lllDEPt~~LD~~~~~---~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 170 ILLDEPTSALDPISAG---KIEETLLGLKD--DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred EEEcCCccccCHHHHH---HHHHHHHHHhh--CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 7899999999999954 55555555432 22233444432 222233555566888876656555543
No 155
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.49 E-value=8.6e-14 Score=139.87 Aligned_cols=201 Identities=17% Similarity=0.181 Sum_probs=120.4
Q ss_pred ccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCC----Ccc-eEEcCcccCccc-cCcceEEEe
Q 007480 52 TIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTK----TKG-IWVWGNPVEMEI-DGSRTSVFY 122 (602)
Q Consensus 52 iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~----TkG-Iwi~~~~~~~~~-~~~~~~vvl 122 (602)
+|+++++.+ ++++|+||||||||||+++|+|.. ++ +.| |++.+.++.... ....+++++
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 68 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLL------------PPGLTQTSGEILLDGRPLLPLSIRGRHIATIM 68 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCccCccccEEEECCEechhhhhhhheeEEEe
Confidence 467888877 899999999999999999999983 55 899 999998764321 124689999
Q ss_pred eccc-cccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhc
Q 007480 123 LDTE-GFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRD 201 (602)
Q Consensus 123 ~Dte-G~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRD 201 (602)
+|.. .+. +..++.+++.+.... ++.......+.+.++...+++.+
T Consensus 69 q~~~~~~~--~~~t~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~l~~------------------------- 114 (230)
T TIGR02770 69 QNPRTAFN--PLFTMGNHAIETLRS-------LGKLSKQARALILEALEAVGLPD------------------------- 114 (230)
T ss_pred cCchhhcC--cccCHHHHHHHHHHH-------cCccHHHHHHHHHHHHHHcCCCc-------------------------
Confidence 9864 232 245677776554322 11111111111222222111100
Q ss_pred cCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHH
Q 007480 202 FLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKK 281 (602)
Q Consensus 202 f~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~ 281 (602)
+ . ...++.+.++|++++++..++ .+++ ..|.+ .+.|||+++||+... ..+.+
T Consensus 115 ---~-------~--------~~~~~~~~~LS~G~~qrv~la---ral~-~~p~v---llLDEPt~~LD~~~~---~~l~~ 166 (230)
T TIGR02770 115 ---P-------E--------EVLKKYPFQLSGGMLQRVMIA---LALL-LEPPF---LIADEPTTDLDVVNQ---ARVLK 166 (230)
T ss_pred ---h-------H--------HHHhCChhhcCHHHHHHHHHH---HHHh-cCCCE---EEEcCCccccCHHHH---HHHHH
Confidence 0 0 001345678899999998888 4444 67777 789999999999994 45566
Q ss_pred HHhhhcCCCccceEeeccHHHHH--HHHHHHHHHcCCCCCCCcchHHH
Q 007480 282 LVASVTRPKIVQGKFLNGNEFVA--FMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 282 ~I~~~~~pK~l~g~~ltG~~l~~--lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
.+.+..+.....-..+++ .+.. -+.+.+-.+++|.+-..++..+.
T Consensus 167 ~l~~~~~~~~~tiii~sH-~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 213 (230)
T TIGR02770 167 LLRELRQLFGTGILLITH-DLGVVARIADEVAVMDDGRIVERGTVKEI 213 (230)
T ss_pred HHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 665543221222234444 3322 23344555688887655554433
No 156
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.49 E-value=8.5e-14 Score=142.20 Aligned_cols=197 Identities=19% Similarity=0.257 Sum_probs=125.9
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc--------------
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM-------------- 111 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~-------------- 111 (602)
..+|+++++.+ ++++|+|+||+|||||+++|+|. .+++.| |++.+.++..
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 85 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL------------EKPSEGSIVVNGQTINLVRDKDGQLKVADKN 85 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCeEEEECCEEcccccccccccccccch
Confidence 45899999988 99999999999999999999998 478999 9999876531
Q ss_pred --cccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCccccc
Q 007480 112 --EIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAF 189 (602)
Q Consensus 112 --~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f 189 (602)
...+..++++.++...+ +..++.||+.++...+ ++.....
T Consensus 86 ~~~~~~~~i~~v~q~~~l~---~~~sv~enl~~~~~~~------~~~~~~~----------------------------- 127 (257)
T PRK10619 86 QLRLLRTRLTMVFQHFNLW---SHMTVLENVMEAPIQV------LGLSKQE----------------------------- 127 (257)
T ss_pred HHHHHhhceEEEecCcccC---CCCcHHHHHHHHHHHh------CCCCHHH-----------------------------
Confidence 01135689999886543 2468889987643210 1111111
Q ss_pred CcccchhhhhhccCCcccHHHHHHHHHHhCCCCC--CCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCC
Q 007480 190 EPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDK--GDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEE 267 (602)
Q Consensus 190 ~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~--~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~ 267 (602)
..+.+.++++..+... .++.+.++|++++++..++ .+++ .+|.+ .+.|||+++
T Consensus 128 ------------------~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~la---ral~-~~p~l---lllDEPt~~ 182 (257)
T PRK10619 128 ------------------ARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA---RALA-MEPEV---LLFDEPTSA 182 (257)
T ss_pred ------------------HHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCccc
Confidence 1112222333322211 1345678899999998887 4554 67777 789999999
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchH
Q 007480 268 LDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLV 325 (602)
Q Consensus 268 Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~ 325 (602)
||+... ..+.+++.+..+ +...-..+++. .....+.+.+-.|++|.+-..++..
T Consensus 183 LD~~~~---~~l~~~l~~l~~-~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (257)
T PRK10619 183 LDPELV---GEVLRIMQQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPE 237 (257)
T ss_pred CCHHHH---HHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999994 456666665533 22333455553 2223233445556888775544433
No 157
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.49 E-value=1.3e-13 Score=158.02 Aligned_cols=219 Identities=13% Similarity=0.151 Sum_probs=139.4
Q ss_pred ccEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcC
Q 007480 31 FPIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWG 106 (602)
Q Consensus 31 iplv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~ 106 (602)
-|++.+++.+..|.-......+|+++++.+ ++++|+|+||||||||+++|+|+ .+++.| |++.+
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gl------------l~p~~G~i~~~g 77 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRL------------LEQAGGLVQCDK 77 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcC------------CCCCCeEEEECC
Confidence 357888776544422122356899999998 99999999999999999999998 478889 88876
Q ss_pred cccC--------c---c------ccCcceEEEeeccc-cccccCCCCchhHHHHHHHhhhhhhhhc-ccchhhhHHHHHH
Q 007480 107 NPVE--------M---E------IDGSRTSVFYLDTE-GFESIGKSNVYDDRIFALATVMSSVLIY-NLPETIREADISR 167 (602)
Q Consensus 107 ~~~~--------~---~------~~~~~~~vvl~Dte-G~~~~~~~tv~d~~ifaLa~LLSS~~Iy-N~~~~i~e~~l~~ 167 (602)
..+. . . ..+..+++++|++. .+. +..++.|++.+++.. + +......
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~--~~~tv~e~l~~~~~~-------~~~~~~~~~------ 142 (623)
T PRK10261 78 MLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLN--PVFTVGEQIAESIRL-------HQGASREEA------ 142 (623)
T ss_pred EEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcC--CCCCHHHHHHHHHHH-------hcCCCHHHH------
Confidence 5321 0 0 01246899999863 232 356899999886532 1 1111111
Q ss_pred HHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCC----CCCCCchhhhhHHHHHHhhcC
Q 007480 168 LSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPND----KGDKNIDMVNQIRNSLAIMGD 243 (602)
Q Consensus 168 L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~----~~~~~i~~ln~~r~~i~~~f~ 243 (602)
.+.+.++|+.++.. ..++.+.++|++++++..++
T Consensus 143 -----------------------------------------~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA- 180 (623)
T PRK10261 143 -----------------------------------------MVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIA- 180 (623)
T ss_pred -----------------------------------------HHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHH-
Confidence 11222223322221 01456788999999999998
Q ss_pred CCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCc
Q 007480 244 NSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTG 322 (602)
Q Consensus 244 ~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~ 322 (602)
+.++..|.+ .+.|||++.||+...+ ++.+++.++.+.....-..+|+. ..+.-+.+.+-.+++|.+-..+
T Consensus 181 ---~AL~~~P~l---LllDEPt~~LD~~~~~---~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~g 251 (623)
T PRK10261 181 ---MALSCRPAV---LIADEPTTALDVTIQA---QILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETG 251 (623)
T ss_pred ---HHHhCCCCE---EEEeCCCCccCHHHHH---HHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecccC
Confidence 344478888 8999999999999955 45555555433223333566664 3334455666667888876555
Q ss_pred chHHH
Q 007480 323 SLVEV 327 (602)
Q Consensus 323 sl~e~ 327 (602)
+..+.
T Consensus 252 ~~~~~ 256 (623)
T PRK10261 252 SVEQI 256 (623)
T ss_pred CHHHh
Confidence 54444
No 158
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.49 E-value=1.2e-13 Score=154.98 Aligned_cols=198 Identities=18% Similarity=0.205 Sum_probs=122.9
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCccccccc-CCCcc-eEEcC------------------
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRD-TKTKG-IWVWG------------------ 106 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~-~~TkG-Iwi~~------------------ 106 (602)
..+|+++++.+ ++++|+|||||||||||++|+|.. . ++++| |++.+
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~-----------~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~ 81 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMD-----------QYEPTSGRIIYHVALCEKCGYVERPSKVGEP 81 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc-----------cCCCCceEEEEeccccccccccccccccccc
Confidence 46899999988 899999999999999999999972 1 57889 87752
Q ss_pred -----cccC-----c--------cccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHH
Q 007480 107 -----NPVE-----M--------EIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRL 168 (602)
Q Consensus 107 -----~~~~-----~--------~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L 168 (602)
.++. . ...+..+++++|++..+. +..++.|++.+++.. ++....
T Consensus 82 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~--~~~tv~~~l~~~~~~-------~~~~~~--------- 143 (520)
T TIGR03269 82 CPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALY--GDDTVLDNVLEALEE-------IGYEGK--------- 143 (520)
T ss_pred cccccccccccchhhhccCHHHHHHhhhcEEEEeccccccC--CCCCHHHHHHHHHHH-------cCCCHH---------
Confidence 1110 0 001245788888743221 245788888775422 111100
Q ss_pred HHHHhhhhhhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcE
Q 007480 169 SFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTA 247 (602)
Q Consensus 169 ~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~c 247 (602)
...+.+.++|+.++. ...++.+.++|++++++..++ +
T Consensus 144 --------------------------------------~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA----~ 181 (520)
T TIGR03269 144 --------------------------------------EAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLA----R 181 (520)
T ss_pred --------------------------------------HHHHHHHHHHHHcCChhhhhcCcccCCHHHHHHHHHH----H
Confidence 011222333333332 111456778999999999998 4
Q ss_pred EEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcch
Q 007480 248 FSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSL 324 (602)
Q Consensus 248 f~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl 324 (602)
..+.+|.+ .++|||++.||+... ..+.+.+.+..+.....-..+++. .+..-+.+.+-.|++|.+-..++.
T Consensus 182 al~~~p~l---llLDEPt~~LD~~~~---~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~ 253 (520)
T TIGR03269 182 QLAKEPFL---FLADEPTGTLDPQTA---KLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTP 253 (520)
T ss_pred HHhcCCCE---EEeeCCcccCCHHHH---HHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCH
Confidence 44578887 899999999999995 455555655543222333456653 333334455556678877544443
No 159
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=1.1e-13 Score=139.84 Aligned_cols=196 Identities=17% Similarity=0.209 Sum_probs=121.8
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc---------cccCc
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM---------EIDGS 116 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~---------~~~~~ 116 (602)
..+|+++++.+ ++++|+||||||||||+++|+|. .+++.| |++.+.++.. ...+.
T Consensus 15 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 82 (242)
T PRK11124 15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLL------------EMPRSGTLNIAGNHFDFSKTPSDKAIRELRR 82 (242)
T ss_pred eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEecccccccchhhHHHHHh
Confidence 46899999888 99999999999999999999998 478999 9999886521 01234
Q ss_pred ceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchh
Q 007480 117 RTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVW 196 (602)
Q Consensus 117 ~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw 196 (602)
.+++++++...+ +..++.||+.+....+ ++....
T Consensus 83 ~i~~~~q~~~~~---~~~tv~e~i~~~~~~~------~~~~~~------------------------------------- 116 (242)
T PRK11124 83 NVGMVFQQYNLW---PHLTVQQNLIEAPCRV------LGLSKD------------------------------------- 116 (242)
T ss_pred heEEEecCcccc---CCCcHHHHHHHHHHHH------cCCCHH-------------------------------------
Confidence 688999886543 2457888875422110 110000
Q ss_pred hhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHH
Q 007480 197 LIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKR 275 (602)
Q Consensus 197 ~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~ 275 (602)
...+.+..+++..+. ...++.+.++|++++++..++ .+++ ..|.+ .+.|||+++||++..
T Consensus 117 ----------~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la---ral~-~~p~l---lilDEPt~~LD~~~~-- 177 (242)
T PRK11124 117 ----------QALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIA---RALM-MEPQV---LLFDEPTAALDPEIT-- 177 (242)
T ss_pred ----------HHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH---HHHh-cCCCE---EEEcCCCCcCCHHHH--
Confidence 001112222322222 111345678899999998888 5555 56776 789999999999984
Q ss_pred HHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcch
Q 007480 276 REQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSL 324 (602)
Q Consensus 276 ~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl 324 (602)
+.+.+.+.+..+ ....-..+++. ....-+.+.+-.+++|.+-..++.
T Consensus 178 -~~l~~~l~~~~~-~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~ 225 (242)
T PRK11124 178 -AQIVSIIRELAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225 (242)
T ss_pred -HHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 456666655432 12222344442 222223344555677877544443
No 160
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.49 E-value=1.2e-13 Score=140.69 Aligned_cols=199 Identities=20% Similarity=0.263 Sum_probs=124.9
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-------------
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME------------- 112 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~------------- 112 (602)
..+|+++++.+ ++++|+||||||||||+++|+|. .+++.| |++.+.++...
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTL------------EPIDEGQIQVEGEQLYHMPGRNGPLVPADEK 80 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEEccccccccccccccchh
Confidence 45899999888 89999999999999999999998 478999 99998766310
Q ss_pred ---ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCccccc
Q 007480 113 ---IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAF 189 (602)
Q Consensus 113 ---~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f 189 (602)
..+..+++++++..-+ +..++.||+.++... .++....
T Consensus 81 ~~~~~~~~i~~v~q~~~~~---~~~tv~~nl~~~~~~------~~~~~~~------------------------------ 121 (252)
T TIGR03005 81 HLRQMRNKIGMVFQSFNLF---PHKTVLDNVTEAPVL------VLGMARA------------------------------ 121 (252)
T ss_pred HHHHHhhCeEEEecCcccC---CCCcHHHHHHHHHHH------hcCCCHH------------------------------
Confidence 1135688999886433 356888887764211 0010000
Q ss_pred CcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCC
Q 007480 190 EPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEEL 268 (602)
Q Consensus 190 ~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~L 268 (602)
..++.++++++.++. ...++.+.+++++++++..++ .+++ .+|.+ .+.|||+++|
T Consensus 122 -----------------~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la---ral~-~~p~l---lllDEP~~~L 177 (252)
T TIGR03005 122 -----------------EAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIA---RALA-MRPKV---MLFDEVTSAL 177 (252)
T ss_pred -----------------HHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHH---HHHH-cCCCE---EEEeCCcccC
Confidence 001122233333222 111345678899999988887 4544 67777 8899999999
Q ss_pred CHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHH
Q 007480 269 DPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVE 326 (602)
Q Consensus 269 d~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e 326 (602)
|+... ..+.+.+.+..+.....-..+++.. ...-+.+.+-.+++|.+-..++..+
T Consensus 178 D~~~~---~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T TIGR03005 178 DPELV---GEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDE 233 (252)
T ss_pred CHHHH---HHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99984 4566666655432222334455532 2222344555568887754444433
No 161
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=1.4e-13 Score=141.62 Aligned_cols=221 Identities=15% Similarity=0.168 Sum_probs=130.4
Q ss_pred ccEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcC
Q 007480 31 FPIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWG 106 (602)
Q Consensus 31 iplv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~ 106 (602)
-|++..++.+. .+. ...+|+++++.+ ++++|+|+||||||||+++|+|+... ...++++| |.+.|
T Consensus 19 ~~~l~~~~l~~--~~~--~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-------~~~~~~~G~i~~~g 87 (268)
T PRK14248 19 EHILEVKDLSI--YYG--EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDL-------IPSARSEGEILYEG 87 (268)
T ss_pred CceEEEEEEEE--EeC--CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccc-------cCCCCCceEEEECC
Confidence 34677665433 332 346899999988 89999999999999999999996200 00016889 99988
Q ss_pred cccCcc-----ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccc-hhhhHHHHHHHHHHHhhhhhhhc
Q 007480 107 NPVEME-----IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLP-ETIREADISRLSFAVELAEEFYG 180 (602)
Q Consensus 107 ~~~~~~-----~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~-~~i~e~~l~~L~~~~~L~~~i~~ 180 (602)
.++... .....+++++++...+. .++.||+.+.+.. +... ....++.+..+...+++.
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~----~tv~enl~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~----- 151 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFP----KSIYNNITHALKY-------AGERRKSVLDEIVEESLTKAALW----- 151 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCc----ccHHHHHHHHHHh-------cCCCcHHHHHHHHHHHHHHcCCC-----
Confidence 776421 12356899998865442 3788888765422 1110 000111111111111100
Q ss_pred ccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhccc
Q 007480 181 RVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKL 260 (602)
Q Consensus 181 ~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L 260 (602)
+ + +...+ ++.+.++|++++++..++ .+++ .+|.+ .+
T Consensus 152 ----------~-------------~------~~~~~--------~~~~~~LSgGq~qrl~la---ral~-~~p~l---ll 187 (268)
T PRK14248 152 ----------D-------------E------VKDRL--------HSSALSLSGGQQQRLCIA---RTLA-MKPAV---LL 187 (268)
T ss_pred ----------c-------------c------hHHHH--------hcCcccCCHHHHHHHHHH---HHHh-CCCCE---EE
Confidence 0 0 00011 345678999999998888 4444 67777 89
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 261 CDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 261 ~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
.|||+++||+... +.+.+.+.+..+ ...-..+++.. ...-+.+.+-.+++|.+-..++..+.
T Consensus 188 LDEPt~~LD~~~~---~~l~~~l~~~~~--~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 188 LDEPASALDPISN---AKIEELITELKE--EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred EcCCCcccCHHHH---HHHHHHHHHHhc--CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999994 556666666533 22223444432 22223344455688887555554444
No 162
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.49 E-value=2.1e-13 Score=139.23 Aligned_cols=210 Identities=15% Similarity=0.174 Sum_probs=125.7
Q ss_pred EEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCC----Ccc-eEE
Q 007480 33 IVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTK----TKG-IWV 104 (602)
Q Consensus 33 lv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~----TkG-Iwi 104 (602)
.+..++.+.++ ...+|+++++.+ ++++|+|+||||||||+++|+|.. ++ ++| |++
T Consensus 4 ~l~~~~l~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~~~~~G~i~~ 66 (254)
T PRK10418 4 QIELRNIALQA-----AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGIL------------PAGVRQTAGRVLL 66 (254)
T ss_pred EEEEeCeEEEe-----ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCCcCCEEEE
Confidence 34555544333 235899999988 899999999999999999999983 56 899 999
Q ss_pred cCcccCccc-cCcceEEEeeccc-cccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhccc
Q 007480 105 WGNPVEMEI-DGSRTSVFYLDTE-GFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRV 182 (602)
Q Consensus 105 ~~~~~~~~~-~~~~~~vvl~Dte-G~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~ 182 (602)
.|.++.... .+..++++++|.. .+. +..++.++..+.+.. +... ..++
T Consensus 67 ~g~~i~~~~~~~~~i~~v~q~~~~~~~--~~~~~~~~~~~~~~~-------~~~~--~~~~------------------- 116 (254)
T PRK10418 67 DGKPVAPCALRGRKIATIMQNPRSAFN--PLHTMHTHARETCLA-------LGKP--ADDA------------------- 116 (254)
T ss_pred CCeeccccccccceEEEEecCCccccC--ccccHHHHHHHHHHH-------cCCC--hHHH-------------------
Confidence 998764221 2356899999864 232 123444544332211 1100 0111
Q ss_pred CCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCC----CCCCchhhhhHHHHHHhhcCCCcEEEccCccchhc
Q 007480 183 KGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDK----GDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRT 258 (602)
Q Consensus 183 ~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~----~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~ 258 (602)
.+.++++.++... .++.+.++|+++++...++ ++++ .+|.+
T Consensus 117 ----------------------------~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~la---ral~-~~p~l--- 161 (254)
T PRK10418 117 ----------------------------TLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIA---LALL-CEAPF--- 161 (254)
T ss_pred ----------------------------HHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHH---HHHh-cCCCE---
Confidence 1222222222110 1345678899999998888 4444 67777
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 259 KLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 259 ~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
.+.|||+++||+... ..+.+.+.+..+.+...-..+++.. ...-+.+.+-.+++|.+-..++..+.
T Consensus 162 LlLDEPt~~LD~~~~---~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 228 (254)
T PRK10418 162 IIADEPTTDLDVVAQ---ARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETL 228 (254)
T ss_pred EEEeCCCcccCHHHH---HHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 899999999999984 4555555554332222223444422 22223344555678877555554444
No 163
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.49 E-value=1.2e-13 Score=155.38 Aligned_cols=217 Identities=19% Similarity=0.257 Sum_probs=137.3
Q ss_pred cEEeeCCCcceEEecc-------ccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc
Q 007480 32 PIVEPDPGHTKLRLSR-------EGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG 101 (602)
Q Consensus 32 plv~~d~~~~~l~~~~-------eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG 101 (602)
|++.+++.+.++.-.. ....+|+++++.+ ++++|+||||||||||+++|+|+ .+ ++|
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl------------~~-~~G 340 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRL------------IN-SQG 340 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCc------------CC-CCc
Confidence 4677776554442111 1246899999988 89999999999999999999998 34 789
Q ss_pred -eEEcCcccCccc------cCcceEEEeeccc-cccccCCCCchhHHHHHHHhhhhhhhhcc--cchhhhHHHHHHHHHH
Q 007480 102 -IWVWGNPVEMEI------DGSRTSVFYLDTE-GFESIGKSNVYDDRIFALATVMSSVLIYN--LPETIREADISRLSFA 171 (602)
Q Consensus 102 -Iwi~~~~~~~~~------~~~~~~vvl~Dte-G~~~~~~~tv~d~~ifaLa~LLSS~~IyN--~~~~i~e~~l~~L~~~ 171 (602)
|++.|.++.... .+..+++++|++. .+ .+..++.|++.+++.. +. ....
T Consensus 341 ~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l--~~~~tv~e~l~~~~~~-------~~~~~~~~------------ 399 (529)
T PRK15134 341 EIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSL--NPRLNVLQIIEEGLRV-------HQPTLSAA------------ 399 (529)
T ss_pred EEEECCEEccccchhhHHHhhhceEEEEeCchhhc--CCcccHHHHHHHHHHh-------ccccCChH------------
Confidence 999997764211 1346899999863 22 2356888988765421 10 0000
Q ss_pred HhhhhhhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEE
Q 007480 172 VELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFS 249 (602)
Q Consensus 172 ~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~ 249 (602)
...+.++++|+.++.. ..++.+.++|++++++..++ .++
T Consensus 400 -----------------------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la---~al- 440 (529)
T PRK15134 400 -----------------------------------QREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIA---RAL- 440 (529)
T ss_pred -----------------------------------HHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHH---HHH-
Confidence 0111222333333221 12456778999999999998 344
Q ss_pred ccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 250 LPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 250 L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
+..|.+ .+.|||++.||+... ..+.+.|.+..+.....-..+|+. .++..+.+++-.|++|.+-..++..+.
T Consensus 441 ~~~p~l---lllDEPt~~LD~~~~---~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 513 (529)
T PRK15134 441 ILKPSL---IILDEPTSSLDKTVQ---AQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERV 513 (529)
T ss_pred hCCCCE---EEeeCCccccCHHHH---HHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHH
Confidence 467877 899999999999995 455556655543223333456653 333444566666788887544444443
No 164
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=1.1e-13 Score=139.09 Aligned_cols=196 Identities=16% Similarity=0.213 Sum_probs=122.1
Q ss_pred cccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-ccCcceEEEeecccccc
Q 007480 55 RITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-IDGSRTSVFYLDTEGFE 129 (602)
Q Consensus 55 ~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-~~~~~~~vvl~DteG~~ 129 (602)
++++.+ ++++|+||||||||||+++|+|. .+++.| |++.+.++... .....+++++++..-+
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~- 83 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGF------------LTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLF- 83 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCeecCcCChhhccEEEEecccccc-
Confidence 677777 89999999999999999999998 488999 99998876421 1235688998886433
Q ss_pred ccCCCCchhHHHHHHHhhhhhhhhccc-chhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCcccH
Q 007480 130 SIGKSNVYDDRIFALATVMSSVLIYNL-PETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSV 208 (602)
Q Consensus 130 ~~~~~tv~d~~ifaLa~LLSS~~IyN~-~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~ 208 (602)
+..++.||+.+.... +. ....+++.+.++...+++.+
T Consensus 84 --~~~tv~e~l~~~~~~--------~~~~~~~~~~~~~~~l~~~~l~~-------------------------------- 121 (232)
T PRK10771 84 --SHLTVAQNIGLGLNP--------GLKLNAAQREKLHAIARQMGIED-------------------------------- 121 (232)
T ss_pred --cCCcHHHHHhccccc--------ccCCCHHHHHHHHHHHHHcCcHH--------------------------------
Confidence 245788887654211 00 00011112222222222211
Q ss_pred HHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 007480 209 QEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTR 288 (602)
Q Consensus 209 ~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~ 288 (602)
..++.+.++|+++++...++ .+++ ..|.+ .+.|||+++||++.. ..+.+.+.+..+
T Consensus 122 --------------~~~~~~~~LS~G~~qrv~la---ral~-~~p~l---llLDEP~~gLD~~~~---~~~~~~l~~~~~ 177 (232)
T PRK10771 122 --------------LLARLPGQLSGGQRQRVALA---RCLV-REQPI---LLLDEPFSALDPALR---QEMLTLVSQVCQ 177 (232)
T ss_pred --------------HHhCCcccCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCcccCCHHHH---HHHHHHHHHHHH
Confidence 11345667899999888887 4554 67776 789999999999994 566666665543
Q ss_pred CCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHHHh
Q 007480 289 PKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEVFN 329 (602)
Q Consensus 289 pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~~n 329 (602)
.+...-..+++. ....-+.+.+-.+++|.+-..++..+..+
T Consensus 178 ~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 178 ERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred hcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 222222344442 22333445566668888765555554443
No 165
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=1.2e-13 Score=140.40 Aligned_cols=215 Identities=19% Similarity=0.257 Sum_probs=128.5
Q ss_pred EEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCccccccc--C--CCcc-eEE
Q 007480 33 IVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRD--T--KTKG-IWV 104 (602)
Q Consensus 33 lv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~--~--~TkG-Iwi 104 (602)
++..++.+ +.+. ...+|+++++.+ ++++|+|+||||||||+++|+|.. . + ++.| |++
T Consensus 4 ~l~~~~l~--~~~~--~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~~~p~~~~~G~v~i 68 (251)
T PRK14251 4 IISAKDVH--LSYG--NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMN-----------DDIENIKITGEIKF 68 (251)
T ss_pred eEEEEeeE--EEEC--CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc-----------ccccCCCcceEEEE
Confidence 45555433 3332 346899999988 899999999999999999999983 1 1 4789 999
Q ss_pred cCcccCcc-----ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccc-hhhhHHHHHHHHHHHhhhhhh
Q 007480 105 WGNPVEME-----IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLP-ETIREADISRLSFAVELAEEF 178 (602)
Q Consensus 105 ~~~~~~~~-----~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~-~~i~e~~l~~L~~~~~L~~~i 178 (602)
.+.++... ..+..+++++++..-+ ..++.||+.++... +... ....++.+..+...+++..
T Consensus 69 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~----~~tv~enl~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~-- 135 (251)
T PRK14251 69 EGQNIYGSKMDLVELRKEVGMVFQQPTPF----PFSVYDNVAYGLKI-------AGVKDKELIDQRVEESLKQAAIWK-- 135 (251)
T ss_pred CCEEcccccchHHHhhccEEEEecCCccC----CCcHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHHcCCCc--
Confidence 98875321 1235688999886433 24888998765432 1111 0001111111111111100
Q ss_pred hcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhc
Q 007480 179 YGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRT 258 (602)
Q Consensus 179 ~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~ 258 (602)
+ +.. ..++.+.++|+++++...++ +++. ..|.+
T Consensus 136 ----------------------~----------~~~--------~~~~~~~~LS~Gq~qr~~la---ral~-~~p~l--- 168 (251)
T PRK14251 136 ----------------------E----------TKD--------NLDRNAQAFSGGQQQRICIA---RALA-VRPKV--- 168 (251)
T ss_pred ----------------------c----------hHH--------HhccChhhCCHHHHHHHHHH---HHHh-cCCCE---
Confidence 0 000 01345678899999988887 4544 67777
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 259 KLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 259 ~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
.+.|||+++||++.. +.+.+.+.+..+ ...-..+++.. ....+.+.+-.+++|.+-..++..+.
T Consensus 169 lllDEP~~~LD~~~~---~~l~~~l~~~~~--~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 169 VLLDEPTSALDPISS---SEIEETLMELKH--QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred EEecCCCccCCHHHH---HHHHHHHHHHHc--CCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 899999999999984 556666665532 22334555532 22223344455688887555554443
No 166
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.48 E-value=1.9e-13 Score=137.62 Aligned_cols=193 Identities=17% Similarity=0.256 Sum_probs=120.2
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-ccCcceEEEeec
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-IDGSRTSVFYLD 124 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-~~~~~~~vvl~D 124 (602)
..+++++++.+ ++++|+|+||+|||||+++|+|. .+++.| |.+.|.++... .....++++++|
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~------------~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF------------ETPTSGEILLDGKDITNLPPHKRPVNTVFQN 80 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCceEEEECCEEcCcCChhhcceEEEecc
Confidence 46899999888 89999999999999999999998 478899 99988766421 124578999998
Q ss_pred cccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCC
Q 007480 125 TEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQ 204 (602)
Q Consensus 125 teG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~ 204 (602)
..-+. ..++.||+.+.... ++......++.+
T Consensus 81 ~~~~~---~~t~~~nl~~~~~~-------~~~~~~~~~~~~--------------------------------------- 111 (232)
T cd03300 81 YALFP---HLTVFENIAFGLRL-------KKLPKAEIKERV--------------------------------------- 111 (232)
T ss_pred cccCC---CCcHHHHHHHHHHh-------cCCCHHHHHHHH---------------------------------------
Confidence 65443 45788887765422 111111111111
Q ss_pred cccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHH
Q 007480 205 GKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLV 283 (602)
Q Consensus 205 g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I 283 (602)
+.+++.++. +..++.+.++|+++++...++ .++ +.+|.+ .+.|+|+.+||+... ..+.+.+
T Consensus 112 --------~~~l~~~~l~~~~~~~~~~lS~G~~qrl~la---ral-~~~p~l---lllDEP~~gLD~~~~---~~l~~~l 173 (232)
T cd03300 112 --------AEALDLVQLEGYANRKPSQLSGGQQQRVAIA---RAL-VNEPKV---LLLDEPLGALDLKLR---KDMQLEL 173 (232)
T ss_pred --------HHHHHHcCCchhhcCChhhCCHHHHHHHHHH---HHH-hcCCCE---EEEcCCcccCCHHHH---HHHHHHH
Confidence 222222221 111344567888888888877 444 367777 789999999999994 4565556
Q ss_pred hhhcCCCccceEeeccHHHHHHHHHH---HHHHcCCCCCCCcc
Q 007480 284 ASVTRPKIVQGKFLNGNEFVAFMEQI---LEALNKGEIPSTGS 323 (602)
Q Consensus 284 ~~~~~pK~l~g~~ltG~~l~~lv~~y---v~aINsG~vP~~~s 323 (602)
.+..+.....-..+++ ... .+..+ +-.+++|.+-..++
T Consensus 174 ~~~~~~~~~tiii~sh-~~~-~~~~~~d~i~~l~~G~~~~~~~ 214 (232)
T cd03300 174 KRLQKELGITFVFVTH-DQE-EALTMSDRIAVMNKGKIQQIGT 214 (232)
T ss_pred HHHHHHcCCEEEEEeC-CHH-HHHHhcCEEEEEECCEEEecCC
Confidence 5543211112233333 332 23333 44447787644443
No 167
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.48 E-value=2.1e-13 Score=139.19 Aligned_cols=203 Identities=18% Similarity=0.145 Sum_probs=126.5
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEEEe
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSVFY 122 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~vvl 122 (602)
..+|+++++.+ ++++|+|+||+|||||+++|+|. .+++.| |++.+.++... .....++++.
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA------------LRPDAGTVDLAGVDLHGLSRRARARRVALVE 81 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC------------CCCCCCEEEECCEEcccCCHHHHhhheEEec
Confidence 45899999888 89999999999999999999998 488999 99998776421 1134588888
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
++...+ ...++.||+.++..... + ++....
T Consensus 82 q~~~~~---~~~tv~e~l~~~~~~~~-~--~~~~~~-------------------------------------------- 111 (256)
T TIGR03873 82 QDSDTA---VPLTVRDVVALGRIPHR-S--LWAGDS-------------------------------------------- 111 (256)
T ss_pred ccCccC---CCCCHHHHHHhcchhhh-h--hccCCC--------------------------------------------
Confidence 876433 24688888776421100 0 000000
Q ss_pred CCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKK 281 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~ 281 (602)
....+.+.++++.++. ...++.+.++|++++++..++ .++ +.+|.+ .+.|||+++||+... +.+.+
T Consensus 112 ---~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la---~al-~~~p~l---lllDEPt~~LD~~~~---~~l~~ 178 (256)
T TIGR03873 112 ---PHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVA---RAL-AQEPKL---LLLDEPTNHLDVRAQ---LETLA 178 (256)
T ss_pred ---HHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHH---HHH-hcCCCE---EEEcCccccCCHHHH---HHHHH
Confidence 0011223333333332 112456778899999988887 344 367777 789999999999994 45666
Q ss_pred HHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 282 LVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 282 ~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
.+.+..+ +...-..+++. ....-+.+.+-.+++|.+-..++..+..
T Consensus 179 ~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 179 LVRELAA-TGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred HHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 6655432 12222344442 2222234455556888876555555443
No 168
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.48 E-value=1.5e-13 Score=141.07 Aligned_cols=201 Identities=16% Similarity=0.189 Sum_probs=126.8
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc------cCcceE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI------DGSRTS 119 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~------~~~~~~ 119 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|+ .+++.| |++.+.++.... .+..++
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~ 91 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL------------EKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQ 91 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEECCEEccccCHHHHHHHhhceE
Confidence 45899999988 89999999999999999999998 488999 999988764211 134689
Q ss_pred EEeeccc-cccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhh
Q 007480 120 VFYLDTE-GFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLI 198 (602)
Q Consensus 120 vvl~Dte-G~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~v 198 (602)
+++++.. .+. +..++.|++.+.+... .+......
T Consensus 92 ~v~q~~~~~~~--~~~tv~~~l~~~~~~~------~~~~~~~~------------------------------------- 126 (265)
T TIGR02769 92 LVFQDSPSAVN--PRMTVRQIIGEPLRHL------TSLDESEQ------------------------------------- 126 (265)
T ss_pred EEecChhhhcC--CCCCHHHHHHHHHHHh------cCCCHHHH-------------------------------------
Confidence 9999863 232 2467888876543210 01100011
Q ss_pred hhccCCcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHH
Q 007480 199 QRDFLQGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRR 276 (602)
Q Consensus 199 vRDf~~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~ 276 (602)
.+.++++++.++.. ..++.+.++|++++++..++ ++++ .+|.+ .+.|||++.||+...
T Consensus 127 ----------~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~la---ral~-~~p~i---llLDEPt~~LD~~~~--- 186 (265)
T TIGR02769 127 ----------KARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIA---RALA-VKPKL---IVLDEAVSNLDMVLQ--- 186 (265)
T ss_pred ----------HHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCcccCCHHHH---
Confidence 11122233332221 11355678899999998887 4444 57777 789999999999984
Q ss_pred HHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 277 EQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 277 ~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
..+.+.+.+..+.....-..+++. ..+.-+.+.+-.+++|.+-..++..+.
T Consensus 187 ~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (265)
T TIGR02769 187 AVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQL 238 (265)
T ss_pred HHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHH
Confidence 455566655543212222344443 222234455556688877555554444
No 169
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=1.3e-13 Score=139.85 Aligned_cols=205 Identities=20% Similarity=0.227 Sum_probs=126.9
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEEEe
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSVFY 122 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~vvl 122 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|... ..+++.| |.+.|+++... ..+..+++++
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---------~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~ 85 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMND---------KIAKIDGLVEIEGKDVKNQDVVALRKNVGMVF 85 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---------CCCCCceEEEECCEecccCCHHHHhhhEEEEe
Confidence 45899999888 8999999999999999999999730 0136899 99999876431 1245689999
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccc--hhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhh
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLP--ETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQR 200 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~--~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvR 200 (602)
++..-+. .++.||+.++... +... ....++.+.++...+++.+.
T Consensus 86 q~~~l~~----~tv~eni~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~l~~~----------------------- 131 (246)
T PRK14269 86 QQPNVFV----KSIYENISYAPKL-------HGMIKNKDEEEALVVDCLQKVGLFEE----------------------- 131 (246)
T ss_pred cCCcccc----ccHHHHhhhHHhh-------cCcccChHHHHHHHHHHHHHcCCChh-----------------------
Confidence 9875442 4888998765322 1110 01111122222222222100
Q ss_pred ccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHH
Q 007480 201 DFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLK 280 (602)
Q Consensus 201 Df~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~ 280 (602)
++.. .++...++|++++++..++ ++++ .+|.+ .+.|||++.||+.. ...+.
T Consensus 132 -----------~~~~--------~~~~~~~LS~G~~qrv~la---ral~-~~p~l---llLDEP~~~LD~~~---~~~l~ 182 (246)
T PRK14269 132 -----------VKDK--------LKQNALALSGGQQQRLCIA---RALA-IKPKL---LLLDEPTSALDPIS---SGVIE 182 (246)
T ss_pred -----------hhHH--------hcCCcccCCHHHHHHHHHH---HHHh-cCCCE---EEEcCCcccCCHHH---HHHHH
Confidence 0000 1244567899999998888 4444 67777 78999999999998 45666
Q ss_pred HHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 281 KLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 281 ~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
+.+.+... ...-..+++. ....-+.+.+-.+++|.+-..++..+..
T Consensus 183 ~~l~~~~~--~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 183 ELLKELSH--NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred HHHHHHhC--CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 66666533 2222344442 2222334555566888876555555443
No 170
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=9.8e-14 Score=141.89 Aligned_cols=220 Identities=15% Similarity=0.190 Sum_probs=132.2
Q ss_pred CcccEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccC-C---Ccc
Q 007480 29 QAFPIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDT-K---TKG 101 (602)
Q Consensus 29 ~~iplv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~-~---TkG 101 (602)
++-+++.+++.+.++ . ...+|+++++.+ ++++|+|+||||||||+++|+|.. .+ + +.|
T Consensus 8 ~~~~~l~i~~l~~~~--~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-----------~~~p~~~~~G 72 (259)
T PRK14274 8 MKQEVYQINGMNLWY--G--QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMI-----------QMVPNVKLTG 72 (259)
T ss_pred cCCceEEEeeEEEEE--C--CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc-----------cCCCCCCCce
Confidence 445577777654333 2 346899999988 899999999999999999999973 11 2 689
Q ss_pred -eEEcCcccCc---c--ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccc-hhhhHHHHHHHHHHHhh
Q 007480 102 -IWVWGNPVEM---E--IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLP-ETIREADISRLSFAVEL 174 (602)
Q Consensus 102 -Iwi~~~~~~~---~--~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~-~~i~e~~l~~L~~~~~L 174 (602)
|++.|.++.. . ..+..+++++++...+. .++.||+.+.... ++.. .....+.++.+...+++
T Consensus 73 ~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~----~tv~enl~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l 141 (259)
T PRK14274 73 EMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFP----QSIFDNVAYGPRI-------HGTKNKKKLQEIVEKSLKDVAL 141 (259)
T ss_pred EEEECCEEccccccCHHHHhhceEEEecCCcccc----cCHHHHHHhHHHh-------cCCCCHHHHHHHHHHHHHHcCC
Confidence 9999987642 1 12356899999865442 3788888765321 1110 00001111111111111
Q ss_pred hhhhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCcc
Q 007480 175 AEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPH 254 (602)
Q Consensus 175 ~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~ 254 (602)
.+. +...+ ++.+.++|++++++..++ .+++ ..|.
T Consensus 142 ~~~----------------------------------~~~~l--------~~~~~~LS~Gq~qrv~la---ral~-~~p~ 175 (259)
T PRK14274 142 WDE----------------------------------VKDRL--------HTQALSLSGGQQQRLCIA---RALA-TNPD 175 (259)
T ss_pred chh----------------------------------hhhhh--------hCCcccCCHHHHHHHHHH---HHHh-cCCC
Confidence 000 00001 245678899999998887 4444 6777
Q ss_pred chhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 255 LLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 255 ~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
+ .+.|||+++||+.. ...+.+.+.+..+ ...-..+++.. ...-+.+.+-.+++|.+-..++..+..
T Consensus 176 l---lllDEPt~~LD~~~---~~~l~~~l~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 176 V---LLMDEPTSALDPVS---TRKIEELILKLKE--KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred E---EEEcCCcccCCHHH---HHHHHHHHHHHhc--CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 7 78999999999998 4566666666532 22223444422 222233444456888886666655544
No 171
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.48 E-value=2.2e-13 Score=139.21 Aligned_cols=214 Identities=15% Similarity=0.127 Sum_probs=129.3
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGN 107 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~ 107 (602)
+++..++.+.++ + ...+|+++++.+ ++++|+|+||||||||+++|+|. .+++.| |++.+.
T Consensus 5 ~~l~~~~l~~~~--~--~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~ 68 (258)
T PRK11701 5 PLLSVRGLTKLY--G--PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSAR------------LAPDAGEVHYRMR 68 (258)
T ss_pred ceEEEeeeEEEc--C--CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCCEEEECCc
Confidence 356666543322 2 245899999988 89999999999999999999998 488999 999998
Q ss_pred c-----cCccc-------cCcceEEEeeccc-cccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhh
Q 007480 108 P-----VEMEI-------DGSRTSVFYLDTE-GFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVEL 174 (602)
Q Consensus 108 ~-----~~~~~-------~~~~~~vvl~Dte-G~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L 174 (602)
+ +.... ....+++++++.. .+. +..++.+++.+.+.. ++.. +...+
T Consensus 69 ~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~--~~~~~~~~i~~~~~~-------~~~~---~~~~~--------- 127 (258)
T PRK11701 69 DGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLR--MQVSAGGNIGERLMA-------VGAR---HYGDI--------- 127 (258)
T ss_pred cccccccccCCHHHHHHHhhcceEEEeeCcccccC--ccccHHHHHHHHHHH-------hccC---cHHHH---------
Confidence 6 43211 1345899999863 221 234666776553321 1100 00000
Q ss_pred hhhhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEccC
Q 007480 175 AEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQ 252 (602)
Q Consensus 175 ~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~ 252 (602)
.+...++++..+.. ..++.+.++|++++++..++ ++++ ..
T Consensus 128 ----------------------------------~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~la---ral~-~~ 169 (258)
T PRK11701 128 ----------------------------------RATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIA---RNLV-TH 169 (258)
T ss_pred ----------------------------------HHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHH---HHHh-cC
Confidence 00111122222210 11355678999999999888 5554 66
Q ss_pred ccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHH
Q 007480 253 PHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVE 326 (602)
Q Consensus 253 P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e 326 (602)
|.+ .+.|||++.||+... ..+.+.+.+..+.+...-..+++. .+...+.+.+-.+++|.+-..++..+
T Consensus 170 p~l---lllDEPt~~LD~~~~---~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 238 (258)
T PRK11701 170 PRL---VFMDEPTGGLDVSVQ---ARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQ 238 (258)
T ss_pred CCE---EEEcCCcccCCHHHH---HHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 777 899999999999994 456666655443223333455553 23333445566668887744444433
No 172
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=1.6e-13 Score=139.62 Aligned_cols=215 Identities=16% Similarity=0.226 Sum_probs=129.4
Q ss_pred EEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCC-----Ccc-eE
Q 007480 33 IVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTK-----TKG-IW 103 (602)
Q Consensus 33 lv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~-----TkG-Iw 103 (602)
++.+++.+.++ ....+|+++++.+ ++++|+|+||||||||+++|+|.. ++ +.| |+
T Consensus 4 ~l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~~~~~~G~i~ 67 (253)
T PRK14267 4 AIETVNLRVYY----GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLL------------ELNEEARVEGEVR 67 (253)
T ss_pred eEEEEeEEEEe----CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccC------------CcccCCCCceEEE
Confidence 45555433222 2345899999988 899999999999999999999983 43 589 99
Q ss_pred EcCcccCc---c--ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhccc--chhhhHHHHHHHHHHHhhhh
Q 007480 104 VWGNPVEM---E--IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNL--PETIREADISRLSFAVELAE 176 (602)
Q Consensus 104 i~~~~~~~---~--~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~--~~~i~e~~l~~L~~~~~L~~ 176 (602)
+.|.++.. . ..+..+++++++...+ +..++.||+.++... .+. ........+.++...+++.+
T Consensus 68 ~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~---~~~tv~enl~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~l~~ 137 (253)
T PRK14267 68 LFGRNIYSPDVDPIEVRREVGMVFQYPNPF---PHLTIYDNVAIGVKL-------NGLVKSKKELDERVEWALKKAALWD 137 (253)
T ss_pred ECCEEccccccChHHHhhceeEEecCCccC---CCCcHHHHHHHHHHh-------cCccCCHHHHHHHHHHHHHHcCCcc
Confidence 99987641 1 1235689999886433 356888888765421 111 00001111222221111100
Q ss_pred hhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccch
Q 007480 177 EFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLL 256 (602)
Q Consensus 177 ~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~ 256 (602)
. ++. ..++.+.++|+++++...++ .+++ .+|.+
T Consensus 138 ~----------------------------------~~~--------~~~~~~~~LS~G~~qrv~la---ral~-~~p~l- 170 (253)
T PRK14267 138 E----------------------------------VKD--------RLNDYPSNLSGGQRQRLVIA---RALA-MKPKI- 170 (253)
T ss_pred c----------------------------------hhh--------hhccChhhCCHHHHHHHHHH---HHHh-cCCCE-
Confidence 0 000 01345678999999998888 4444 67777
Q ss_pred hcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 257 RTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 257 ~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
.+.|||+++||+... ..+.+.+.+..+ ...-..+++.. ....+.+.+-.+++|.+-..++..+.
T Consensus 171 --lllDEP~~~LD~~~~---~~l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (253)
T PRK14267 171 --LLMDEPTANIDPVGT---AKIEELLFELKK--EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKV 235 (253)
T ss_pred --EEEcCCCccCCHHHH---HHHHHHHHHHhh--CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 789999999999984 456666665532 22223444422 22223344555688887655554443
No 173
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.48 E-value=1.6e-13 Score=141.26 Aligned_cols=225 Identities=18% Similarity=0.215 Sum_probs=134.4
Q ss_pred CCcccEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eE
Q 007480 28 HQAFPIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IW 103 (602)
Q Consensus 28 ~~~iplv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iw 103 (602)
+++-+++..++.+.++ . ...+|+++++.+ ++++|+|+|||||||||++|+|... +...+++.| |+
T Consensus 15 ~~~~~~l~~~nl~~~~--~--~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-------~~~~~~~~G~i~ 83 (267)
T PRK14237 15 PEEEIALSTKDLHVYY--G--KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMND-------TIDIARVTGQIL 83 (267)
T ss_pred CCCCeEEEEeeEEEEE--C--CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccC-------ccCCCCcceEEE
Confidence 3444567777654333 2 356899999988 8999999999999999999999830 000025899 99
Q ss_pred EcCcccCcc-----ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccc-hhhhHHHHHHHHHHHhhhhh
Q 007480 104 VWGNPVEME-----IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLP-ETIREADISRLSFAVELAEE 177 (602)
Q Consensus 104 i~~~~~~~~-----~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~-~~i~e~~l~~L~~~~~L~~~ 177 (602)
+.+.++... ..+..+++++++...+ ..++.||+.++... .... ....++.+.++...+++.+.
T Consensus 84 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~----~~tv~eni~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~~ 152 (267)
T PRK14237 84 YRGIDINRKEINVYEMRKHIGMVFQRPNPF----AKSIYENITFALER-------AGVKDKKVLDEIVETSLKQAALWDQ 152 (267)
T ss_pred ECCEEcccccCChHHHhcceEEEecCCccc----cccHHHHHHhHHHh-------cCCCCHHHHHHHHHHHHHHcCCCch
Confidence 999876421 1245689999886443 24888998775422 1100 00001111111111111000
Q ss_pred hhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchh
Q 007480 178 FYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLR 257 (602)
Q Consensus 178 i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~ 257 (602)
++..+ ++.+.++|+++++...++ ++++ ..|.+
T Consensus 153 ----------------------------------i~~~~--------~~~~~~LS~G~~qrl~la---ral~-~~p~l-- 184 (267)
T PRK14237 153 ----------------------------------VKDDL--------HKSALTLSGGQQQRLCIA---RAIA-VKPDI-- 184 (267)
T ss_pred ----------------------------------hhhhh--------cCCcccCCHHHHHHHHHH---HHHh-cCCCE--
Confidence 00011 345678899999988887 4444 67777
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 258 TKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 258 ~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
.+.|||+++||+... ..+.+.+.+..+ ...-..+++.. ...-+.+.+-.++.|.+...++..+..
T Consensus 185 -llLDEPt~~LD~~~~---~~l~~~l~~~~~--~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 185 -LLMDEPASALDPIST---MQLEETMFELKK--NYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred -EEEeCCcccCCHHHH---HHHHHHHHHHhc--CCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 789999999999984 456666665532 22233444422 222233445556888886666655543
No 174
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.48 E-value=1.5e-13 Score=141.88 Aligned_cols=229 Identities=18% Similarity=0.231 Sum_probs=140.0
Q ss_pred CCcccccCCCCcccEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccc
Q 007480 19 SGLLAIENFHQAFPIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMR 95 (602)
Q Consensus 19 ~~~~~~~~~~~~iplv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~ 95 (602)
-|-+..++++.+-+++..++.+.++ . ...+|+++++.+ ++++|+|+||||||||+++|+|..
T Consensus 11 ~~~~~~~~~~~~~~~l~~~nl~~~~--~--~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~----------- 75 (272)
T PRK14236 11 LPLLDVLNLSDEQTALEVRNLNLFY--G--DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMN----------- 75 (272)
T ss_pred cccccccccCCCCcEEEEEEEEEEE--C--CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcC-----------
Confidence 3445555666666777777654333 2 235899999988 899999999999999999999983
Q ss_pred cC----CCcc-eEEcCcccCcc-----ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccc-hhhhHHH
Q 007480 96 DT----KTKG-IWVWGNPVEME-----IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLP-ETIREAD 164 (602)
Q Consensus 96 ~~----~TkG-Iwi~~~~~~~~-----~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~-~~i~e~~ 164 (602)
.+ ++.| |++.+.++... ..+..+++++++...+. .++.||+.+.... +... ....++.
T Consensus 76 ~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~----~tv~enl~~~~~~-------~~~~~~~~~~~~ 144 (272)
T PRK14236 76 DLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFP----KSIYENVVYGLRL-------QGINNRRVLDEA 144 (272)
T ss_pred CCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCc----ccHHHHHHHHHHh-------cCCCcHHHHHHH
Confidence 22 4789 99998876421 12457899999865442 2888888765321 1110 0001111
Q ss_pred HHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCC
Q 007480 165 ISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDN 244 (602)
Q Consensus 165 l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~ 244 (602)
++++...+++.+. +... .++...++|++++++..++
T Consensus 145 ~~~~l~~~~l~~~----------------------------------~~~~--------~~~~~~~LS~Gq~qrv~la-- 180 (272)
T PRK14236 145 VERSLRGAALWDE----------------------------------VKDR--------LHENAFGLSGGQQQRLVIA-- 180 (272)
T ss_pred HHHHHHHcCCChh----------------------------------HHHH--------hhCCcccCCHHHHHHHHHH--
Confidence 2222111111000 0000 1345678899999998888
Q ss_pred CcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcc
Q 007480 245 STAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGS 323 (602)
Q Consensus 245 ~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~s 323 (602)
.+++ .+|.+ .+.|||+++||+.. ...+.+.+.+..+ ...-..+|+.. ...-+.+.+-.+++|.+-..++
T Consensus 181 -ral~-~~p~l---llLDEPt~gLD~~~---~~~l~~~L~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~ 250 (272)
T PRK14236 181 -RAIA-IEPEV---LLLDEPTSALDPIS---TLKIEELITELKS--KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGD 250 (272)
T ss_pred -HHHH-CCCCE---EEEeCCcccCCHHH---HHHHHHHHHHHHh--CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCC
Confidence 4444 67877 88999999999998 4566666666543 22233444432 2223445556668888755554
Q ss_pred hHHH
Q 007480 324 LVEV 327 (602)
Q Consensus 324 l~e~ 327 (602)
..+.
T Consensus 251 ~~~~ 254 (272)
T PRK14236 251 TDTL 254 (272)
T ss_pred HHHH
Confidence 4443
No 175
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=1.9e-13 Score=139.82 Aligned_cols=217 Identities=14% Similarity=0.189 Sum_probs=131.1
Q ss_pred ccEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccC----CCcc-e
Q 007480 31 FPIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDT----KTKG-I 102 (602)
Q Consensus 31 iplv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~----~TkG-I 102 (602)
.|++.+++.+. .+ +...+|+++++.+ ++++|+|+||||||||+++|+|.. .+ ++.| |
T Consensus 10 ~~~l~~~~l~~--~~--~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~-----------~~~~~~~~~G~i 74 (258)
T PRK14268 10 QPQIKVENLNL--WY--GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMN-----------DLIKNCRIEGKV 74 (258)
T ss_pred ceeEEEeeeEE--Ee--CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-----------CcccCCCcceEE
Confidence 34666665433 22 2345899999988 899999999999999999999983 12 3799 9
Q ss_pred EEcCcccCcc-----ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhh
Q 007480 103 WVWGNPVEME-----IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEE 177 (602)
Q Consensus 103 wi~~~~~~~~-----~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~ 177 (602)
++.+.++... ..+..+++++++...+ + .++.||+.|.... ++.......+.+.++...+++..
T Consensus 75 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~---~-~tv~enl~~~~~~-------~~~~~~~~~~~~~~~l~~~~l~~- 142 (258)
T PRK14268 75 SIEGEDIYEPDVDVVELRKNVGMVFQKPNPF---P-MSIYDNVAYGPRI-------HGANKKDLDGVVENALRSAALWD- 142 (258)
T ss_pred EECCEEcccccchHHHHhhhEEEEecCCccC---c-ccHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHcCCCc-
Confidence 9988775321 1235689999886433 2 5888998775422 11111100111122211111100
Q ss_pred hhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchh
Q 007480 178 FYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLR 257 (602)
Q Consensus 178 i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~ 257 (602)
+ +... .++.+.++|++++++..++ .+++ .+|.+
T Consensus 143 ------------------~---------------~~~~--------~~~~~~~LSgG~~qrv~la---ral~-~~p~l-- 175 (258)
T PRK14268 143 ------------------E---------------TSDR--------LKSPALSLSGGQQQRLCIA---RTLA-VKPKI-- 175 (258)
T ss_pred ------------------c---------------hhhh--------hcCChhhCCHHHHHHHHHH---HHHH-cCCCE--
Confidence 0 0000 1345678999999999888 4444 67777
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 258 TKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 258 ~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
.+.|||+++||+... ..+.+.+.+..+ ...-..+++.. ...-+.+.+-.|++|.+-..++..+.
T Consensus 176 -lllDEPt~~LD~~~~---~~l~~~l~~l~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 176 -ILFDEPTSALDPIST---ARIEDLIMNLKK--DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred -EEEeCCCcccCHHHH---HHHHHHHHHHhh--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 899999999999994 456666665532 22233455432 22223445556688887555554443
No 176
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.48 E-value=1.8e-13 Score=135.90 Aligned_cols=188 Identities=18% Similarity=0.185 Sum_probs=116.3
Q ss_pred ccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-ccCcceEEEeeccc
Q 007480 52 TIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-IDGSRTSVFYLDTE 126 (602)
Q Consensus 52 iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-~~~~~~~vvl~Dte 126 (602)
.+.++++.+ ++++|+||||||||||+++|+|. .++++| |++.+.++... .....++++++++.
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~ 80 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGF------------IEPASGSIKVNDQSHTGLAPYQRPVSMLFQENN 80 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcC------------CCCCCcEEEECCEEcccCChhccceEEEeccCc
Confidence 356788777 99999999999999999999998 488999 99998876421 12356899999875
Q ss_pred cccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCcc
Q 007480 127 GFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGK 206 (602)
Q Consensus 127 G~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~ 206 (602)
.+ +..++.||+.+.+... +.. ....++.+
T Consensus 81 ~~---~~~t~~en~~~~~~~~------~~~-~~~~~~~~----------------------------------------- 109 (213)
T TIGR01277 81 LF---AHLTVRQNIGLGLHPG------LKL-NAEQQEKV----------------------------------------- 109 (213)
T ss_pred cC---CCCcHHHHHHhHhhcc------CCc-cHHHHHHH-----------------------------------------
Confidence 44 2468888887643110 000 00011122
Q ss_pred cHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhh
Q 007480 207 SVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVAS 285 (602)
Q Consensus 207 t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~ 285 (602)
+++++..+. ...++.+.++|+++++...++ .++. .+|.+ .+.|||++.||++.. ..+.+.+.+
T Consensus 110 ------~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la---ral~-~~p~l---lllDEPt~~LD~~~~---~~~~~~l~~ 173 (213)
T TIGR01277 110 ------VDAAQQVGIADYLDRLPEQLSGGQRQRVALA---RCLV-RPNPI---LLLDEPFSALDPLLR---EEMLALVKQ 173 (213)
T ss_pred ------HHHHHHcCcHHHhhCCcccCCHHHHHHHHHH---HHHh-cCCCE---EEEcCCCccCCHHHH---HHHHHHHHH
Confidence 222222221 111344567888998888887 4444 56776 789999999999994 456666655
Q ss_pred hcCCCccceEeeccH-HHHHHHHHHHHHHcCCCC
Q 007480 286 VTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEI 318 (602)
Q Consensus 286 ~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~v 318 (602)
..+.....-..+++. ....-+.+.+-.+++|.+
T Consensus 174 ~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i 207 (213)
T TIGR01277 174 LCSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207 (213)
T ss_pred HHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeE
Confidence 543222222344442 222223344444566665
No 177
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.47 E-value=3.8e-13 Score=132.80 Aligned_cols=156 Identities=15% Similarity=0.119 Sum_probs=105.1
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc--ccCcceEEEee
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME--IDGSRTSVFYL 123 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~--~~~~~~~vvl~ 123 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|. .+++.| |++.+.++... .....++++.+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~------------~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~ 81 (204)
T PRK13538 14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL------------ARPDAGEVLWQGEPIRRQRDEYHQDLLYLGH 81 (204)
T ss_pred EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEECCEEcccchHHhhhheEEeCC
Confidence 45899999988 89999999999999999999998 488999 99998776421 12346778877
Q ss_pred ccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccC
Q 007480 124 DTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFL 203 (602)
Q Consensus 124 DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~ 203 (602)
+...+ +..++.|++.+.... +. ..+++.++.+...+++.+
T Consensus 82 ~~~~~---~~~tv~e~l~~~~~~-------~~---~~~~~~~~~~l~~~gl~~--------------------------- 121 (204)
T PRK13538 82 QPGIK---TELTALENLRFYQRL-------HG---PGDDEALWEALAQVGLAG--------------------------- 121 (204)
T ss_pred ccccC---cCCcHHHHHHHHHHh-------cC---ccHHHHHHHHHHHcCCHH---------------------------
Confidence 65322 356888887764322 11 011222222222222110
Q ss_pred CcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHH
Q 007480 204 QGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLV 283 (602)
Q Consensus 204 ~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I 283 (602)
..++.+.++|+++++...++ .++ +.+|.+ .+.|||++.||+... +.+.+.+
T Consensus 122 -------------------~~~~~~~~LS~G~~qrl~la---~al-~~~p~l---lllDEPt~~LD~~~~---~~l~~~l 172 (204)
T PRK13538 122 -------------------FEDVPVRQLSAGQQRRVALA---RLW-LTRAPL---WILDEPFTAIDKQGV---ARLEALL 172 (204)
T ss_pred -------------------HhhCChhhcCHHHHHHHHHH---HHH-hcCCCE---EEEeCCCccCCHHHH---HHHHHHH
Confidence 01344567888988888887 344 467877 889999999999995 4555655
Q ss_pred hhh
Q 007480 284 ASV 286 (602)
Q Consensus 284 ~~~ 286 (602)
.+.
T Consensus 173 ~~~ 175 (204)
T PRK13538 173 AQH 175 (204)
T ss_pred HHH
Confidence 554
No 178
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.47 E-value=1.9e-13 Score=135.68 Aligned_cols=183 Identities=16% Similarity=0.186 Sum_probs=112.4
Q ss_pred cccccE--EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc-------cccCcceEEEeec
Q 007480 55 RITNPI--AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM-------EIDGSRTSVFYLD 124 (602)
Q Consensus 55 ~Is~~V--~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~-------~~~~~~~~vvl~D 124 (602)
++++.+ ++++|+||||||||||+++|+|. .+++.| |++.+.++.. ......+++++++
T Consensus 16 ~vsl~i~~e~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 83 (214)
T cd03297 16 KIDFDLNEEVTGIFGASGAGKSTLLRCIAGL------------EKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQ 83 (214)
T ss_pred CceEEEcceeEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCEecccccchhhhhhHhhcEEEEecC
Confidence 777555 99999999999999999999998 478999 9998876531 0123468899887
Q ss_pred cccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCC
Q 007480 125 TEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQ 204 (602)
Q Consensus 125 teG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~ 204 (602)
..-+ +..++.|++.+.... + .....++.+.+
T Consensus 84 ~~~~---~~~t~~~~l~~~~~~-------~--~~~~~~~~~~~------------------------------------- 114 (214)
T cd03297 84 YALF---PHLNVRENLAFGLKR-------K--RNREDRISVDE------------------------------------- 114 (214)
T ss_pred CccC---CCCCHHHHHHHHHhh-------C--CHHHHHHHHHH-------------------------------------
Confidence 6433 246888887664321 1 00001111111
Q ss_pred cccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHH
Q 007480 205 GKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLV 283 (602)
Q Consensus 205 g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I 283 (602)
+++.++. ...++.+.++|+++++...++ .++. .+|.+ .+.|||+++||+... +.+.+.+
T Consensus 115 ----------~l~~~~l~~~~~~~~~~LS~G~~qrv~la---~al~-~~p~l---lllDEPt~~LD~~~~---~~l~~~l 174 (214)
T cd03297 115 ----------LLDLLGLDHLLNRYPAQLSGGEKQRVALA---RALA-AQPEL---LLLDEPFSALDRALR---LQLLPEL 174 (214)
T ss_pred ----------HHHHcCCHhHhhcCcccCCHHHHHHHHHH---HHHh-cCCCE---EEEcCCcccCCHHHH---HHHHHHH
Confidence 1211111 001345667899999988887 4444 67877 889999999999984 4566666
Q ss_pred hhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCC
Q 007480 284 ASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEI 318 (602)
Q Consensus 284 ~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~v 318 (602)
.+..+.....-..+++.. ....+.+.+-.+++|.+
T Consensus 175 ~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 210 (214)
T cd03297 175 KQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRL 210 (214)
T ss_pred HHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 555432222233444422 22223344444566654
No 179
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.47 E-value=1.6e-13 Score=141.77 Aligned_cols=199 Identities=19% Similarity=0.293 Sum_probs=126.8
Q ss_pred cccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-----ccCcceEEE
Q 007480 51 ETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-----IDGSRTSVF 121 (602)
Q Consensus 51 ~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-----~~~~~~~vv 121 (602)
.+++++++.+ ++++|+|+||||||||+++|+|. .+++.| |.+.+.++... .....++++
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl------------~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v 83 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGI------------LKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIV 83 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCccEEEECCEECccccchHHHHHhheEEE
Confidence 5899999988 89999999999999999999998 488999 99999876421 124568999
Q ss_pred eeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhc
Q 007480 122 YLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRD 201 (602)
Q Consensus 122 l~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRD 201 (602)
++|+.... ...++.|++.+.... ++....
T Consensus 84 ~q~~~~~~--~~~tv~e~i~~~~~~-------~~~~~~------------------------------------------ 112 (275)
T PRK13639 84 FQNPDDQL--FAPTVEEDVAFGPLN-------LGLSKE------------------------------------------ 112 (275)
T ss_pred eeChhhhh--ccccHHHHHHHHHHH-------cCCCHH------------------------------------------
Confidence 99964211 134788887654321 110000
Q ss_pred cCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHH
Q 007480 202 FLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLK 280 (602)
Q Consensus 202 f~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~ 280 (602)
...+.+..+++.++. ...++.+.++|+++++...++ .+++ .+|.+ .+.|||+++||+... ..+.
T Consensus 113 -----~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~la---ral~-~~p~l---lllDEPt~gLD~~~~---~~l~ 177 (275)
T PRK13639 113 -----EVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIA---GILA-MKPEI---IVLDEPTSGLDPMGA---SQIM 177 (275)
T ss_pred -----HHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCCcCCCHHHH---HHHH
Confidence 001112223333222 112456778999999998888 4554 67777 789999999999994 4566
Q ss_pred HHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 281 KLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 281 ~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
+.+.+..+. ...-..+++. ..+.-+.+.+-.+++|.+...++..+..
T Consensus 178 ~~l~~l~~~-~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 178 KLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred HHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 666655321 2222344443 2222234455556888876666655443
No 180
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=1e-13 Score=140.32 Aligned_cols=196 Identities=17% Similarity=0.229 Sum_probs=121.6
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEEEe
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSVFY 122 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~vvl 122 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|. .++++| |++.+.++... ..+..+++++
T Consensus 16 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~ 83 (241)
T PRK14250 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRL------------IDPTEGSILIDGVDIKTIDVIDLRRKIGMVF 83 (241)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEECCEEhhhcChHHhhhcEEEEe
Confidence 35899999988 89999999999999999999998 478999 99999775321 1235689999
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
+|...+ ..++.|++.+.... .+ .....+..+...+++.+
T Consensus 84 q~~~~~----~~tv~e~l~~~~~~-------~~----~~~~~~~~~l~~~~l~~-------------------------- 122 (241)
T PRK14250 84 QQPHLF----EGTVKDNIEYGPML-------KG----EKNVDVEYYLSIVGLNK-------------------------- 122 (241)
T ss_pred cCchhc----hhhHHHHHhcchhh-------cC----cHHHHHHHHHHHcCCCH--------------------------
Confidence 986433 13777776543211 00 01111111111111100
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~ 282 (602)
...++.+.++|++++++..++ .+++ ..|.+ .+.|||+++||+... +.+.+.
T Consensus 123 -------------------~~~~~~~~~LS~G~~qrl~la---~al~-~~p~l---lllDEPt~~LD~~~~---~~l~~~ 173 (241)
T PRK14250 123 -------------------EYATRDVKNLSGGEAQRVSIA---RTLA-NNPEV---LLLDEPTSALDPTST---EIIEEL 173 (241)
T ss_pred -------------------HHhhCCcccCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCcccCCHHHH---HHHHHH
Confidence 001245667899999988887 4444 67777 899999999999984 456666
Q ss_pred HhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 283 VASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 283 I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
+.+..+.....-..+++.. ...-+.+.+-.+++|.+...+...+.
T Consensus 174 l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (241)
T PRK14250 174 IVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDF 219 (241)
T ss_pred HHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 6554332122233444422 22223344555678877555554444
No 181
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.47 E-value=1.5e-13 Score=153.52 Aligned_cols=207 Identities=13% Similarity=0.160 Sum_probs=132.7
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGN 107 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~ 107 (602)
|++.+++.+..+ + ...+|+++++.+ ++++|+||||||||||+++|+|. .++++| |++.+.
T Consensus 3 ~~l~~~~l~~~~--~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~p~~G~I~~~g~ 66 (501)
T PRK11288 3 PYLSFDGIGKTF--P--GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGN------------YQPDAGSILIDGQ 66 (501)
T ss_pred ceEEEeeeEEEE--C--CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCCCEEEECCE
Confidence 456666543333 2 345899999988 89999999999999999999998 478999 999887
Q ss_pred ccCcc----ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccC
Q 007480 108 PVEME----IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVK 183 (602)
Q Consensus 108 ~~~~~----~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~ 183 (602)
++... ..+..+++++|+...+ +..++.||+.++... .. .+..
T Consensus 67 ~i~~~~~~~~~~~~i~~v~q~~~~~---~~~tv~~~l~~~~~~-------~~-~~~~----------------------- 112 (501)
T PRK11288 67 EMRFASTTAALAAGVAIIYQELHLV---PEMTVAENLYLGQLP-------HK-GGIV----------------------- 112 (501)
T ss_pred ECCCCCHHHHHhCCEEEEEechhcc---CCCCHHHHHHhcccc-------cc-cCCC-----------------------
Confidence 76421 1235689999986433 356888887764211 00 0000
Q ss_pred CcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCC
Q 007480 184 GQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCD 262 (602)
Q Consensus 184 ~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d 262 (602)
+.....+.++++|+.++. ...++.+.++|++++++..++ .+++ ..|.+ .+.|
T Consensus 113 --------------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~la---ral~-~~p~l---llLD 165 (501)
T PRK11288 113 --------------------NRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIA---KALA-RNARV---IAFD 165 (501)
T ss_pred --------------------CHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHH---HHHH-hCCCE---EEEc
Confidence 000112234445554443 122466788999999999988 4444 67777 8999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCC
Q 007480 263 MKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIP 319 (602)
Q Consensus 263 ~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP 319 (602)
||++.||+... +.+.+++.+..+ +...-..+++. .....+.+.+-.+++|.+-
T Consensus 166 EPt~~LD~~~~---~~l~~~l~~~~~-~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~ 219 (501)
T PRK11288 166 EPTSSLSAREI---EQLFRVIRELRA-EGRVILYVSHRMEEIFALCDAITVFKDGRYV 219 (501)
T ss_pred CCCCCCCHHHH---HHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999994 455666655532 22233455553 2333334455566778763
No 182
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.47 E-value=1.6e-13 Score=140.45 Aligned_cols=203 Identities=19% Similarity=0.280 Sum_probs=124.2
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCccccccc--C--CCcc-eEEcCcccCcc-----ccCc
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRD--T--KTKG-IWVWGNPVEME-----IDGS 116 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~--~--~TkG-Iwi~~~~~~~~-----~~~~ 116 (602)
..+|+++++.+ ++++|+||||||||||+++|+|.. . + ++.| |++.+.++... ..+.
T Consensus 26 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~ 94 (260)
T PRK10744 26 FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMY-----------ELYPEQRAEGEILLDGENILTPKQDIALLRA 94 (260)
T ss_pred eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc-----------ccCCCCCcceEEEECCEEccccccchHHHhc
Confidence 35899999988 999999999999999999999983 1 1 4789 99999776321 1245
Q ss_pred ceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcc-cchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccch
Q 007480 117 RTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYN-LPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLV 195 (602)
Q Consensus 117 ~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN-~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~fl 195 (602)
.+++++++...+ + .++.||+.+.... ++ .......+.+.++...+++.+.
T Consensus 95 ~i~~~~q~~~~~---~-~tv~~nl~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~~------------------ 145 (260)
T PRK10744 95 KVGMVFQKPTPF---P-MSIYDNIAFGVRL-------FEKLSRAEMDERVEWALTKAALWNE------------------ 145 (260)
T ss_pred ceEEEecCCccC---c-CcHHHHHhhhHhh-------cCCCCHHHHHHHHHHHHHHcCCChh------------------
Confidence 689999986433 2 5888888765321 11 0000001112222211111000
Q ss_pred hhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHH
Q 007480 196 WLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKR 275 (602)
Q Consensus 196 w~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~ 275 (602)
+...+ ++.+.++|++++++..++ .+++ ..|.+ .+.|||+++||+...
T Consensus 146 ----------------~~~~~--------~~~~~~LS~Gq~qrv~la---ral~-~~p~l---llLDEPt~~LD~~~~-- 192 (260)
T PRK10744 146 ----------------VKDKL--------HQSGYSLSGGQQQRLCIA---RGIA-IRPEV---LLLDEPCSALDPIST-- 192 (260)
T ss_pred ----------------hHHHH--------hcCCCCCCHHHHHHHHHH---HHHH-CCCCE---EEEcCCCccCCHHHH--
Confidence 00011 244668899999998888 4444 67777 899999999999984
Q ss_pred HHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 276 REQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 276 ~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
+.+.+.+.+..+ ...-..+++.. ....+.+.+-.+++|.+-..++..+..
T Consensus 193 -~~l~~~L~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 193 -GRIEELITELKQ--DYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred -HHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 456666665532 22234455432 222233445556788875555554443
No 183
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.47 E-value=2.5e-13 Score=138.26 Aligned_cols=212 Identities=14% Similarity=0.096 Sum_probs=125.6
Q ss_pred EEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcc
Q 007480 33 IVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNP 108 (602)
Q Consensus 33 lv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~ 108 (602)
++..++.+..+ . ...+|+++++.+ ++++|+|+||||||||+++|+|. .+++.| |++.+.+
T Consensus 3 ~l~~~~l~~~~--~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~ 66 (253)
T TIGR02323 3 LLQVSGLSKSY--G--GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR------------LAPDHGTATYIMRS 66 (253)
T ss_pred eEEEeeeEEEe--C--CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEEeccc
Confidence 45555443322 2 245799999988 89999999999999999999998 478999 9998876
Q ss_pred -----cCc-cc------cCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhh
Q 007480 109 -----VEM-EI------DGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAE 176 (602)
Q Consensus 109 -----~~~-~~------~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~ 176 (602)
+.. .. ....++++++|+... .....++.+++.+.+.. +.... ..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~~~~~~~~~i~~~~~~-------~~~~~--~~-------------- 122 (253)
T TIGR02323 67 GAELELYQLSEAERRRLMRTEWGFVHQNPRDG-LRMRVSAGANIGERLMA-------IGARH--YG-------------- 122 (253)
T ss_pred ccccccccCCHHHHHHhhhcceEEEEeCcccc-cCccccHHHHHHHHHHH-------hcccc--hH--------------
Confidence 321 10 124578999886321 11233555665443211 00000 00
Q ss_pred hhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEccCcc
Q 007480 177 EFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPH 254 (602)
Q Consensus 177 ~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~ 254 (602)
...+.+.+.++..+.. ..++.+.++|++++++..++ .+++ ..|.
T Consensus 123 ------------------------------~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~la---ral~-~~p~ 168 (253)
T TIGR02323 123 ------------------------------NIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIA---RNLV-TRPR 168 (253)
T ss_pred ------------------------------HHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHH---HHHh-cCCC
Confidence 0011222333333221 12456778999999999888 4444 6777
Q ss_pred chhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcch
Q 007480 255 LLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSL 324 (602)
Q Consensus 255 ~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl 324 (602)
+ .+.|||++.||+... ..+.+.+.+..+.....-..+++. .....+.+.+-.+++|.+-..+..
T Consensus 169 v---lllDEP~~~LD~~~~---~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~ 233 (253)
T TIGR02323 169 L---VFMDEPTGGLDVSVQ---ARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLT 233 (253)
T ss_pred E---EEEcCCCccCCHHHH---HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCH
Confidence 7 789999999999994 456666655433223333455553 222223344445577877444433
No 184
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=2e-13 Score=138.83 Aligned_cols=205 Identities=17% Similarity=0.236 Sum_probs=124.8
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCC--Ccc-eEEcCcccCcc-----ccCcce
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTK--TKG-IWVWGNPVEME-----IDGSRT 118 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~--TkG-Iwi~~~~~~~~-----~~~~~~ 118 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|.. | ..++ +.| |++.|.++... ..+..+
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~---~------~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 86 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMN---D------LIPATRLEGEIRIDGRNIYDKGVQVDELRKNV 86 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhh---c------ccCCCCCceEEEECCEecccccccHHHHhhhe
Confidence 45899999888 999999999999999999999851 0 0133 589 99999876421 123468
Q ss_pred EEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccc-hhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhh
Q 007480 119 SVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLP-ETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWL 197 (602)
Q Consensus 119 ~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~-~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~ 197 (602)
++++++..-+ ..++.||+.+.... ++.. ....++.++++...+++.+.
T Consensus 87 ~~v~q~~~~~----~~tv~~nl~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~~-------------------- 135 (250)
T PRK14245 87 GMVFQRPNPF----PKSIFENVAYGLRV-------NGVKDNAFIRQRVEETLKGAALWDE-------------------- 135 (250)
T ss_pred EEEecCCccC----cccHHHHHHHHHHH-------cCCCcHHHHHHHHHHHHHHcCCCcc--------------------
Confidence 9999986433 24788888765422 1110 00011111111111111000
Q ss_pred hhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHH
Q 007480 198 IQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRRE 277 (602)
Q Consensus 198 vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~ 277 (602)
++. ..++.+.++|++++++..++ .++. .+|.+ .+.|||+++||+... .
T Consensus 136 --------------~~~--------~~~~~~~~LS~G~~qrv~la---ral~-~~p~l---llLDEPt~~LD~~~~---~ 183 (250)
T PRK14245 136 --------------VKD--------KLKESAFALSGGQQQRLCIA---RAMA-VSPSV---LLMDEPASALDPIST---A 183 (250)
T ss_pred --------------hhh--------hhhCCcccCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCCccCCHHHH---H
Confidence 000 01345678899999998888 4554 67777 899999999999994 4
Q ss_pred HHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 278 QLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 278 ~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
.+.+.+.+..+ ...-..+++.. ....+.+.+-.+++|.+-..++..+..
T Consensus 184 ~l~~~l~~~~~--~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 184 KVEELIHELKK--DYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHHHHhc--CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 56666666532 22233444422 222334555566888876666555543
No 185
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.47 E-value=2.1e-13 Score=133.75 Aligned_cols=217 Identities=17% Similarity=0.168 Sum_probs=146.4
Q ss_pred EEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc---cC
Q 007480 43 LRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI---DG 115 (602)
Q Consensus 43 l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~---~~ 115 (602)
+.+.-+..++|++++++. ++++|+||||+||||||+.|.|. ..|+.| +.+.+.+...-. ..
T Consensus 7 ls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGe------------l~p~~G~v~~~g~~l~~~~~~~lA 74 (259)
T COG4559 7 LSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGE------------LSPDSGEVTLNGVPLNSWPPEELA 74 (259)
T ss_pred eEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCc------------cCCCCCeEeeCCcChhhCCHHHHH
Confidence 455567788999999877 99999999999999999999998 478999 999998876421 23
Q ss_pred cceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccch
Q 007480 116 SRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLV 195 (602)
Q Consensus 116 ~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~fl 195 (602)
...+++.|++..-.. -++.|.+.++..- ++
T Consensus 75 ~~raVlpQ~s~laFp---Ftv~eVV~mGr~p-------~~---------------------------------------- 104 (259)
T COG4559 75 RHRAVLPQNSSLAFP---FTVQEVVQMGRIP-------HR---------------------------------------- 104 (259)
T ss_pred HHhhhcccCcccccc---eEHHHHHHhcccc-------cc----------------------------------------
Confidence 456888888865332 2455555543321 11
Q ss_pred hhhhhccCCcc---cHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEE-ccCccchh-cccCCCCCCCCC
Q 007480 196 WLIQRDFLQGK---SVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFS-LPQPHLLR-TKLCDMKDEELD 269 (602)
Q Consensus 196 w~vvRDf~~g~---t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~-L~~P~~~~-~~L~d~p~~~Ld 269 (602)
.|. ...+..+++|..... ....+...++|++.+++..++ +..+ +..|..+. -.++|||++.||
T Consensus 105 --------~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlA---RvLaQl~~~v~~~r~L~LDEPtsaLD 173 (259)
T COG4559 105 --------SGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLA---RVLAQLWPPVPSGRWLFLDEPTSALD 173 (259)
T ss_pred --------cCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHH---HHHHHccCCCCCCceEEecCCccccc
Confidence 111 123346677776654 334567788999999999887 3332 23444332 468999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCccce-EeeccHHHHHHHHHHHHHHcCCCCCCCcchHHHHhHHHHHHH
Q 007480 270 PIYVKRREQLKKLVASVTRPKIVQG-KFLNGNEFVAFMEQILEALNKGEIPSTGSLVEVFNKGILERC 336 (602)
Q Consensus 270 ~~F~e~~~~L~~~I~~~~~pK~l~g-~~ltG~~l~~lv~~yv~aINsG~vP~~~sl~e~~n~~av~~a 336 (602)
......+-++ ...+++.. ... ..++.-.++....+.+-.+..|.+-+.++..++.+.+.++..
T Consensus 174 i~HQ~~tl~l---aR~la~~g-~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~Etl~~v 237 (259)
T COG4559 174 IAHQHHTLRL---ARQLAREG-GAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDETLERV 237 (259)
T ss_pred hHHHHHHHHH---HHHHHhcC-CcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCHHHHHHH
Confidence 9996655444 33443332 222 355655565555555556689999999999999887766554
No 186
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.47 E-value=9.4e-14 Score=138.58 Aligned_cols=173 Identities=17% Similarity=0.148 Sum_probs=113.3
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc------ccCcceE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME------IDGSRTS 119 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~------~~~~~~~ 119 (602)
..+|+++++.+ ++++|+|+||+|||||++.|+|. .+++.| |++.+.++... .....++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 85 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGL------------RSVQEGSLKVLGQELYGASEKELVQLRRNIG 85 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCeEEEECCEEhHhcCHhHHHHHHhheE
Confidence 45899999888 89999999999999999999998 488999 99998876421 1235689
Q ss_pred EEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhh
Q 007480 120 VFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQ 199 (602)
Q Consensus 120 vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vv 199 (602)
++++|..-+. ..++.||+.++... +.. ...
T Consensus 86 ~~~q~~~~~~---~~t~~~n~~~~~~~-------~~~---~~~------------------------------------- 115 (220)
T TIGR02982 86 YIFQAHNLLG---FLTARQNVQMALEL-------QPN---LSY------------------------------------- 115 (220)
T ss_pred EEcCChhhcC---CCCHHHHHHHHHHh-------ccC---CCH-------------------------------------
Confidence 9988865432 46788887764321 100 000
Q ss_pred hccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHH
Q 007480 200 RDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQ 278 (602)
Q Consensus 200 RDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~ 278 (602)
....+.++++++.++. ...++.+.++|.+++++..++ .++. ..|.+ .+.|||+..||++.. ..
T Consensus 116 ------~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~la---ral~-~~p~i---lllDEP~~~LD~~~~---~~ 179 (220)
T TIGR02982 116 ------QEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIA---RALV-HRPKL---VLADEPTAALDSKSG---RD 179 (220)
T ss_pred ------HHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCCCcCCHHHH---HH
Confidence 0011223333333332 112345678889999888887 4444 67777 789999999999994 45
Q ss_pred HHHHHhhhcCCCccceEeeccH
Q 007480 279 LKKLVASVTRPKIVQGKFLNGN 300 (602)
Q Consensus 279 L~~~I~~~~~pK~l~g~~ltG~ 300 (602)
+.+.+.+..+.+...-..+++.
T Consensus 180 l~~~l~~~~~~~~~tii~~sh~ 201 (220)
T TIGR02982 180 VVELMQKLAREQGCTILIVTHD 201 (220)
T ss_pred HHHHHHHHHHHcCCEEEEEeCC
Confidence 6666655543222333455554
No 187
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.47 E-value=4.9e-13 Score=134.04 Aligned_cols=170 Identities=21% Similarity=0.199 Sum_probs=111.8
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGN 107 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~ 107 (602)
+++..++.+.++ + ...+++++++.+ ++++|+||||||||||+++|+|. .++++| |++.+.
T Consensus 6 ~~i~~~~l~~~~--~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~ 69 (225)
T PRK10247 6 PLLQLQNVGYLA--G--DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASL------------ISPTSGTLLFEGE 69 (225)
T ss_pred ceEEEeccEEee--C--CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcc------------cCCCCCeEEECCE
Confidence 456666554333 2 345899999988 89999999999999999999998 478999 999987
Q ss_pred ccCcc---ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCC
Q 007480 108 PVEME---IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKG 184 (602)
Q Consensus 108 ~~~~~---~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~ 184 (602)
++... ..+..++++++++..+ ..++.||+.+.... +... ..+..+
T Consensus 70 ~~~~~~~~~~~~~i~~~~q~~~l~----~~tv~enl~~~~~~-------~~~~--~~~~~~------------------- 117 (225)
T PRK10247 70 DISTLKPEIYRQQVSYCAQTPTLF----GDTVYDNLIFPWQI-------RNQQ--PDPAIF------------------- 117 (225)
T ss_pred EcCcCCHHHHHhccEEEecccccc----cccHHHHHHhHHhh-------cCCC--hHHHHH-------------------
Confidence 65421 1235688999886433 23888887764321 1100 011111
Q ss_pred cccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCC
Q 007480 185 QDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCD 262 (602)
Q Consensus 185 e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d 262 (602)
+++++.++.. ..++.+.++|+++++...++ .++. ..|.+ .+.|
T Consensus 118 ----------------------------~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la---ral~-~~p~l---lllD 162 (225)
T PRK10247 118 ----------------------------LDDLERFALPDTILTKNIAELSGGEKQRISLI---RNLQ-FMPKV---LLLD 162 (225)
T ss_pred ----------------------------HHHHHHcCCChHHhcCCcccCCHHHHHHHHHH---HHHh-cCCCE---EEEe
Confidence 1222222110 11345677889998888887 4443 67777 7899
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhc
Q 007480 263 MKDEELDPIYVKRREQLKKLVASVT 287 (602)
Q Consensus 263 ~p~~~Ld~~F~e~~~~L~~~I~~~~ 287 (602)
||+++||+... +.+.+.+.+..
T Consensus 163 EPt~~LD~~~~---~~l~~~l~~~~ 184 (225)
T PRK10247 163 EITSALDESNK---HNVNEIIHRYV 184 (225)
T ss_pred CCcccCCHHHH---HHHHHHHHHHH
Confidence 99999999994 45555565543
No 188
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=2.3e-13 Score=138.43 Aligned_cols=216 Identities=16% Similarity=0.191 Sum_probs=130.9
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccC----CCcc-eE
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDT----KTKG-IW 103 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~----~TkG-Iw 103 (602)
|++..++.+.++ . ...+|+++++.+ ++++|+|+||+|||||+++|+|.. .+ ++.| |.
T Consensus 3 ~~l~~~~l~~~~--~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----------~~~~~~~~~G~i~ 67 (251)
T PRK14270 3 IKMESKNLNLWY--G--EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMN-----------DLISNVKIEGEVL 67 (251)
T ss_pred cEEEEEEeEEEE--C--CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhcc-----------CcccCCCCccEEE
Confidence 566666543333 2 345899999888 999999999999999999999973 12 3789 99
Q ss_pred EcCcccCcc-----ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccc-hhhhHHHHHHHHHHHhhhhh
Q 007480 104 VWGNPVEME-----IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLP-ETIREADISRLSFAVELAEE 177 (602)
Q Consensus 104 i~~~~~~~~-----~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~-~~i~e~~l~~L~~~~~L~~~ 177 (602)
+.+.++... ..+..++++++|...+ + .++.||+.|.... +... ....+..+..+...+++.+.
T Consensus 68 ~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~---~-~tv~enl~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~~ 136 (251)
T PRK14270 68 LDGKNIYDKDVDVVELRKRVGMVFQKPNPF---P-MSIYDNVAYGPRI-------HGIKDKKELDKIVEWALKKAALWDE 136 (251)
T ss_pred ECCEecccccccHHHHHhheEEEecCCCcC---C-CcHHHHHHhHHHh-------cCCCcHHHHHHHHHHHHHHcCCchh
Confidence 998876421 1235689999987543 2 5888988765422 1110 00001111111111111000
Q ss_pred hhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchh
Q 007480 178 FYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLR 257 (602)
Q Consensus 178 i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~ 257 (602)
+ +.. .++.+.++|+++++...++ .++. .+|.+
T Consensus 137 ~----------------------------------~~~--------~~~~~~~LS~G~~qrv~la---ral~-~~p~l-- 168 (251)
T PRK14270 137 V----------------------------------KDD--------LKKSALKLSGGQQQRLCIA---RTIA-VKPDV-- 168 (251)
T ss_pred h----------------------------------hhH--------hhCCcccCCHHHHHHHHHH---HHHh-cCCCE--
Confidence 0 000 1345678899999988887 4544 56777
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 258 TKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 258 ~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
.+.|||+++||+... ..+.+.+.+..+ ...-..+++.. ....+.+.+-.+++|.+-..++..+.
T Consensus 169 -lllDEP~~~LD~~~~---~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 169 -ILMDEPTSALDPIST---LKIEDLMVELKK--EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred -EEEeCCcccCCHHHH---HHHHHHHHHHHh--CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 789999999999984 456666665543 22223444422 22334455666688887555555444
No 189
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.46 E-value=1.7e-13 Score=137.27 Aligned_cols=192 Identities=16% Similarity=0.145 Sum_probs=119.9
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccC---CCcc-eEEcCcccCccccCcceEEEe
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDT---KTKG-IWVWGNPVEMEIDGSRTSVFY 122 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~---~TkG-Iwi~~~~~~~~~~~~~~~vvl 122 (602)
..+|+++++.+ ++++|+||||||||||++.|+|. .+ ++.| |++.+.++.....+..+++++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~------------~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~ 87 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGR------------VEGGGTTSGQILFNGQPRKPDQFQKCVAYVR 87 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCc------------cCCCCCCceEEEECCEECChHHhcccEEEeC
Confidence 56899999888 89999999999999999999998 36 7899 999987764322345688998
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
++..-+ +..|+.||+.++... . ......+..
T Consensus 88 q~~~~~---~~~tv~enl~~~~~~-------~-~~~~~~~~~-------------------------------------- 118 (226)
T cd03234 88 QDDILL---PGLTVRETLTYTAIL-------R-LPRKSSDAI-------------------------------------- 118 (226)
T ss_pred CCCccC---cCCcHHHHHHHHHHh-------h-cccccchHH--------------------------------------
Confidence 886433 356888988775422 0 000000000
Q ss_pred CCcccHHHHHHH-HHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHD-ALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLK 280 (602)
Q Consensus 203 ~~g~t~~eyLe~-aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~ 280 (602)
.....+. .|+.... ...++.+.++|+++++...++ .++. .+|.+ .+.|||+++||+... ..+.
T Consensus 119 -----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la---ral~-~~p~i---lllDEP~~gLD~~~~---~~~~ 183 (226)
T cd03234 119 -----RKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIA---VQLL-WDPKV---LILDEPTSGLDSFTA---LNLV 183 (226)
T ss_pred -----HHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHH---HHHH-hCCCE---EEEeCCCcCCCHHHH---HHHH
Confidence 0000011 2222111 111345678999999988887 4443 67777 889999999999984 4566
Q ss_pred HHHhhhcCCCccceEeeccHH--HHHHHHHHHHHHcCCCC
Q 007480 281 KLVASVTRPKIVQGKFLNGNE--FVAFMEQILEALNKGEI 318 (602)
Q Consensus 281 ~~I~~~~~pK~l~g~~ltG~~--l~~lv~~yv~aINsG~v 318 (602)
+.+.+..+. ...-..+++.. ...-+.+++-.+++|.+
T Consensus 184 ~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~~G~i 222 (226)
T cd03234 184 STLSQLARR-NRIVILTIHQPRSDLFRLFDRILLLSSGEI 222 (226)
T ss_pred HHHHHHHHC-CCEEEEEecCCCHHHHHhCCEEEEEeCCEE
Confidence 666654322 22223444432 33334445555566655
No 190
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.46 E-value=3.2e-13 Score=136.45 Aligned_cols=199 Identities=20% Similarity=0.294 Sum_probs=124.5
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-ccCcceEEEeec
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-IDGSRTSVFYLD 124 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-~~~~~~~vvl~D 124 (602)
..+|+++++.+ ++++|+|+||||||||++.|+|. .+++.| |.+.+.++... .....+++++++
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~------------~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~ 80 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGL------------EQPDSGRIRLNGQDATRVHARDRKIGFVFQH 80 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCceEEEECCEEcCcCChhhcCEEEEecC
Confidence 45899999888 89999999999999999999998 478999 99999876431 123568889887
Q ss_pred cccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCC
Q 007480 125 TEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQ 204 (602)
Q Consensus 125 teG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~ 204 (602)
..-+ +..++.||+.+.... +......
T Consensus 81 ~~~~---~~~t~~enl~~~~~~-------~~~~~~~-------------------------------------------- 106 (237)
T TIGR00968 81 YALF---KHLTVRDNIAFGLEI-------RKHPKAK-------------------------------------------- 106 (237)
T ss_pred hhhc---cCCcHHHHHHhHHHh-------cCCCHHH--------------------------------------------
Confidence 6433 245778887664322 1110000
Q ss_pred cccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHH
Q 007480 205 GKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLV 283 (602)
Q Consensus 205 g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I 283 (602)
..+.++++++..+. ...++.+.++|+++++...++ .++. .+|.+ .+.|||+++||++. .+.+.+.+
T Consensus 107 ---~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~la---ral~-~~p~l---lllDEP~~~LD~~~---~~~~~~~l 173 (237)
T TIGR00968 107 ---IKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALA---RALA-VEPQV---LLLDEPFGALDAKV---RKELRSWL 173 (237)
T ss_pred ---HHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHH---HHHh-cCCCE---EEEcCCcccCCHHH---HHHHHHHH
Confidence 01122223332221 111345567888988888877 4544 56776 78999999999998 45566666
Q ss_pred hhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 284 ASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 284 ~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
.+..+.....-..+++.. ...-+.+.+-.+++|.+-..++..+.
T Consensus 174 ~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 218 (237)
T TIGR00968 174 RKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218 (237)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHH
Confidence 654332122223444422 22333455555688887555544433
No 191
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.46 E-value=2.1e-13 Score=140.98 Aligned_cols=207 Identities=15% Similarity=0.120 Sum_probs=124.8
Q ss_pred cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCC--------cc-eEEcCcccCcc---c
Q 007480 49 GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKT--------KG-IWVWGNPVEME---I 113 (602)
Q Consensus 49 al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~T--------kG-Iwi~~~~~~~~---~ 113 (602)
...+|+++++.+ ++++|+||||||||||+++|+|.. +++ .| |.+.|.++... .
T Consensus 13 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~------------~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDL------------TGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCcccccccCCceEEEECCEEcccCCHHH
Confidence 346899999888 899999999999999999999983 555 89 99998876421 1
Q ss_pred cCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCccc
Q 007480 114 DGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAK 193 (602)
Q Consensus 114 ~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~ 193 (602)
....+++++++...+. ..++.||+.++.... ....+...
T Consensus 81 ~~~~~~~v~q~~~~~~---~~tv~e~l~~~~~~~------~~~~~~~~-------------------------------- 119 (272)
T PRK13547 81 LARLRAVLPQAAQPAF---AFSAREIVLLGRYPH------ARRAGALT-------------------------------- 119 (272)
T ss_pred HHhhcEEecccCCCCC---CCcHHHHHhhccccc------ccccccCC--------------------------------
Confidence 1235788988865432 357888876632100 00000000
Q ss_pred chhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEc--------cCccchhcccCCCC
Q 007480 194 LVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSL--------PQPHLLRTKLCDMK 264 (602)
Q Consensus 194 flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L--------~~P~~~~~~L~d~p 264 (602)
....+..+++|+..+. ...++.+.++|++++++..++ .++.. ..|.+ .+.|||
T Consensus 120 ------------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la---ral~~~~~~~~~~~~p~l---llLDEP 181 (272)
T PRK13547 120 ------------HRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFA---RVLAQLWPPHDAAQPPRY---LLLDEP 181 (272)
T ss_pred ------------HHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHH---HHHhccccccccCCCCCE---EEEcCc
Confidence 0011223333433332 112456778999999988887 44442 36666 789999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHHHh
Q 007480 265 DEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEVFN 329 (602)
Q Consensus 265 ~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~~n 329 (602)
++.||+... +.+.+.+.+..+.....-..+++. ....-+.+.+-.+++|.+-..++..+..+
T Consensus 182 t~~LD~~~~---~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 182 TAALDLAHQ---HRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLT 244 (272)
T ss_pred cccCCHHHH---HHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCHHHHcC
Confidence 999999994 456666655433222223344443 22222334444557888755555544433
No 192
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.46 E-value=1.8e-13 Score=152.45 Aligned_cols=198 Identities=13% Similarity=0.163 Sum_probs=128.4
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc----cCcceEEE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI----DGSRTSVF 121 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~----~~~~~~vv 121 (602)
..+|+++++.+ ++++|+||||||||||+++|+|+ .+++.| |++.|+++.... .+..++++
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGI------------YQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC------------CCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 45899999988 89999999999999999999998 478999 999998764211 13568999
Q ss_pred eeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhc
Q 007480 122 YLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRD 201 (602)
Q Consensus 122 l~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRD 201 (602)
+|+..-+ +..++.|++.++...+ .+.. .
T Consensus 79 ~q~~~~~---~~~tv~~~l~~~~~~~------~~~~--~----------------------------------------- 106 (491)
T PRK10982 79 HQELNLV---LQRSVMDNMWLGRYPT------KGMF--V----------------------------------------- 106 (491)
T ss_pred ecccccc---cCCCHHHHhhcccccc------cccc--c-----------------------------------------
Confidence 9986433 3568888876542110 0000 0
Q ss_pred cCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHH
Q 007480 202 FLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLK 280 (602)
Q Consensus 202 f~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~ 280 (602)
......+.++++++.++. ...++.+.++|++++++..++ .++ +.+|.+ .+.|||+++||+...+ .+.
T Consensus 107 --~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA---~al-~~~p~l---llLDEPt~~LD~~~~~---~l~ 174 (491)
T PRK10982 107 --DQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIA---KAF-SYNAKI---VIMDEPTSSLTEKEVN---HLF 174 (491)
T ss_pred --CHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHH---HHH-HhCCCE---EEEeCCCCCCCHHHHH---HHH
Confidence 000112233444444433 122566789999999999998 444 467877 8999999999999954 555
Q ss_pred HHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcch
Q 007480 281 KLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSL 324 (602)
Q Consensus 281 ~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl 324 (602)
+.+.+..+ +...-..+++. .....+.+.+-.+++|.+-..++.
T Consensus 175 ~~l~~l~~-~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 218 (491)
T PRK10982 175 TIIRKLKE-RGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPL 218 (491)
T ss_pred HHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecCh
Confidence 55555432 22223445553 233334455666788877544443
No 193
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=3.5e-13 Score=138.18 Aligned_cols=216 Identities=17% Similarity=0.222 Sum_probs=130.4
Q ss_pred cccEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCC-----Ccc
Q 007480 30 AFPIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTK-----TKG 101 (602)
Q Consensus 30 ~iplv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~-----TkG 101 (602)
-++++..++.+.++ . ...+|+++++.+ ++++|+|+||||||||+++|+|.. ++ ..|
T Consensus 4 ~~~~l~~~nl~~~~--~--~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~------------~~~g~i~~~G 67 (261)
T PRK14258 4 LIPAIKVNNLSFYY--D--TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN------------ELESEVRVEG 67 (261)
T ss_pred ccceEEEeeEEEEe--C--CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhccc------------CCCCCccccc
Confidence 35567776544333 2 235899999988 899999999999999999999984 44 378
Q ss_pred -eEEcCcccCcc-----ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhh
Q 007480 102 -IWVWGNPVEME-----IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELA 175 (602)
Q Consensus 102 -Iwi~~~~~~~~-----~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~ 175 (602)
|.+.+.++... .....+++++++...+ + .++.||+.+.... ++.....+
T Consensus 68 ~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~---~-~tv~enl~~~~~~-------~~~~~~~~-------------- 122 (261)
T PRK14258 68 RVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLF---P-MSVYDNVAYGVKI-------VGWRPKLE-------------- 122 (261)
T ss_pred eEEECCEEhhccccchHHhhccEEEEecCCccC---c-ccHHHHHHHHHHh-------cCCCcHHH--------------
Confidence 88888765311 1235688888876433 2 5788887664321 11100000
Q ss_pred hhhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-----CCCCCCchhhhhHHHHHHhhcCCCcEEEc
Q 007480 176 EEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-----DKGDKNIDMVNQIRNSLAIMGDNSTAFSL 250 (602)
Q Consensus 176 ~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-----~~~~~~i~~ln~~r~~i~~~f~~~~cf~L 250 (602)
..+.+.++++..+. +..++.+.++|++++++..++ .+++
T Consensus 123 --------------------------------~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la---ral~- 166 (261)
T PRK14258 123 --------------------------------IDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIA---RALA- 166 (261)
T ss_pred --------------------------------HHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH---HHHh-
Confidence 01111122221110 001345678899999998888 4444
Q ss_pred cCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcC-----CCCCCCcch
Q 007480 251 PQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNK-----GEIPSTGSL 324 (602)
Q Consensus 251 ~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINs-----G~vP~~~sl 324 (602)
.+|.+ .+.|||+++||++.. ..+.+.+.+..+.....-..+++. ....-+.+.+-.+++ |.+...++.
T Consensus 167 ~~p~v---llLDEP~~~LD~~~~---~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~ 240 (261)
T PRK14258 167 VKPKV---LLMDEPCFGLDPIAS---MKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLT 240 (261)
T ss_pred cCCCE---EEEeCCCccCCHHHH---HHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCH
Confidence 67777 789999999999994 466666665432212222344442 222333445556677 777555555
Q ss_pred HHHH
Q 007480 325 VEVF 328 (602)
Q Consensus 325 ~e~~ 328 (602)
.+..
T Consensus 241 ~~~~ 244 (261)
T PRK14258 241 KKIF 244 (261)
T ss_pred HHHH
Confidence 5443
No 194
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.46 E-value=1.1e-13 Score=160.09 Aligned_cols=207 Identities=16% Similarity=0.229 Sum_probs=140.0
Q ss_pred eEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc---ccc
Q 007480 42 KLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM---EID 114 (602)
Q Consensus 42 ~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~---~~~ 114 (602)
.|.+.++...+|+++++.+ +.++|+|++|||||||+|.|+|. .+|++| |.++|.++.. ...
T Consensus 458 sf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl------------~~p~~G~I~idg~~i~~~~~~~l 525 (686)
T TIGR03797 458 TFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF------------ETPESGSVFYDGQDLAGLDVQAV 525 (686)
T ss_pred EEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCCEEEECCEEcCcCCHHHH
Confidence 3555444456899999988 99999999999999999999998 489999 9999998763 124
Q ss_pred CcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccc
Q 007480 115 GSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKL 194 (602)
Q Consensus 115 ~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~f 194 (602)
++.++++.||+.-|. +|++||+.++ + . .+++++.+....+++.+.+.. .|.
T Consensus 526 r~~i~~v~Q~~~lf~----gTI~eNi~~~-----------~--~-~~~e~i~~al~~a~l~~~i~~---------lp~-- 576 (686)
T TIGR03797 526 RRQLGVVLQNGRLMS----GSIFENIAGG-----------A--P-LTLDEAWEAARMAGLAEDIRA---------MPM-- 576 (686)
T ss_pred HhccEEEccCCccCc----ccHHHHHhcC-----------C--C-CCHHHHHHHHHHcCcHHHHHh---------ccc--
Confidence 678999999998774 4899998752 1 1 455666666666666544321 121
Q ss_pred hhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHH
Q 007480 195 VWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVK 274 (602)
Q Consensus 195 lw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e 274 (602)
|. +.. + .+.-..+|+|++|+.+++ +++. ..|.+ .+.|||++.||++..+
T Consensus 577 ----------G~------dt~---i-----ge~G~~LSGGQrQRialA---RAll-~~p~i---LiLDEpTS~LD~~te~ 625 (686)
T TIGR03797 577 ----------GM------HTV---I-----SEGGGTLSGGQRQRLLIA---RALV-RKPRI---LLFDEATSALDNRTQA 625 (686)
T ss_pred ----------cc------ccc---c-----cCCCCCCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCccCCCHHHHH
Confidence 10 000 0 011246899999999998 6665 66766 7899999999999844
Q ss_pred HHHHHHHHHhhhcCCCccceEeeccHHHHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 275 RREQLKKLVASVTRPKIVQGKFLNGNEFVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 275 ~~~~L~~~I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
++.+.+.+. .++ -..++++.-.--..+.+-.+++|.+-..++-.+.
T Consensus 626 ---~i~~~L~~~--~~T--~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~L 671 (686)
T TIGR03797 626 ---IVSESLERL--KVT--RIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDEL 671 (686)
T ss_pred ---HHHHHHHHh--CCe--EEEEecChHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 455555544 232 3566664311111223334577888766664443
No 195
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.46 E-value=1.8e-12 Score=146.70 Aligned_cols=234 Identities=16% Similarity=0.135 Sum_probs=139.0
Q ss_pred ccEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcC
Q 007480 31 FPIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWG 106 (602)
Q Consensus 31 iplv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~ 106 (602)
-|++.+++.+..| .. ...+|+++++.| ++++|+|||||||||||++|+|. .+++.| |.+.+
T Consensus 4 ~~~l~i~~l~~~y--~~-~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~------------~~p~~G~i~~~~ 68 (556)
T PRK11819 4 QYIYTMNRVSKVV--PP-KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV------------DKEFEGEARPAP 68 (556)
T ss_pred cEEEEEeeEEEEe--CC-CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEecC
Confidence 4577777644333 21 356899999998 89999999999999999999998 478999 76643
Q ss_pred cccCccccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhccc-ch--hhhHHHHHHHH-HHHhhhhhhhccc
Q 007480 107 NPVEMEIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNL-PE--TIREADISRLS-FAVELAEEFYGRV 182 (602)
Q Consensus 107 ~~~~~~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~-~~--~i~e~~l~~L~-~~~~L~~~i~~~~ 182 (602)
+..+++++|++..+ +..++.|++.+++..+....-.++. .. .........+. ..-++.+.+.
T Consensus 69 --------~~~i~~v~Q~~~~~---~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 134 (556)
T PRK11819 69 --------GIKVGYLPQEPQLD---PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIID--- 134 (556)
T ss_pred --------CCEEEEEecCCCCC---CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHH---
Confidence 24689999987543 3568999988764321000000000 00 00000000000 0000000000
Q ss_pred CCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCC
Q 007480 183 KGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCD 262 (602)
Q Consensus 183 ~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d 262 (602)
..++.+..+.++.+|+.++....++.+.++|++++++..++ .++ +..|.+ .+.|
T Consensus 135 -------------------~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la---~al-~~~p~v---lLLD 188 (556)
T PRK11819 135 -------------------AADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALC---RLL-LEKPDM---LLLD 188 (556)
T ss_pred -------------------hcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHH---HHH-hCCCCE---EEEc
Confidence 00111234456677777665334678899999999999998 444 477877 8999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCC-CCcchHH
Q 007480 263 MKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIP-STGSLVE 326 (602)
Q Consensus 263 ~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP-~~~sl~e 326 (602)
||++.||+...+ .+.+++.+.. . .-..+++. .+..-+.+.+-.|++|.+- ..++..+
T Consensus 189 EPt~~LD~~~~~---~l~~~L~~~~--~--tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~ 247 (556)
T PRK11819 189 EPTNHLDAESVA---WLEQFLHDYP--G--TVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSS 247 (556)
T ss_pred CCCCcCChHHHH---HHHHHHHhCC--C--eEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCCHHH
Confidence 999999999954 4555555441 1 22345552 2333344555666888753 4454433
No 196
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.46 E-value=1.8e-13 Score=141.18 Aligned_cols=218 Identities=16% Similarity=0.228 Sum_probs=131.2
Q ss_pred ccEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCccccccc--C--CCcc-e
Q 007480 31 FPIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRD--T--KTKG-I 102 (602)
Q Consensus 31 iplv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~--~--~TkG-I 102 (602)
-|++..++.+.++ . ...+|+++++.+ ++++|+|+||||||||+++|+|.. . + ++.| |
T Consensus 22 ~~~l~~~~l~~~~--~--~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~-----------~~~~~~~~~G~i 86 (271)
T PRK14238 22 KVVFDTQNLNLWY--G--EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMV-----------ELVPSVKTTGKI 86 (271)
T ss_pred ceEEEEeeeEEEE--C--CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc-----------cCCCCCCCceeE
Confidence 4567777654333 2 345899999988 899999999999999999999983 1 1 5899 9
Q ss_pred EEcCcccCcc-----ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHH-HHHHHhhhh
Q 007480 103 WVWGNPVEME-----IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISR-LSFAVELAE 176 (602)
Q Consensus 103 wi~~~~~~~~-----~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~-L~~~~~L~~ 176 (602)
.+.|.++... .....++++++|+..+. .++.||+.++... +... ++...+. +....+
T Consensus 87 ~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~----~tv~eni~~~~~~-------~~~~---~~~~~~~~~~~~l~--- 149 (271)
T PRK14238 87 LYRDQNIFDKSYSVEELRTNVGMVFQKPNPFP----KSIYDNVTYGPKI-------HGIK---DKKTLDEIVEKSLR--- 149 (271)
T ss_pred EECCEEcccccccHHHHhhhEEEEecCCcccc----ccHHHHHHHHHHh-------cCCC---cHHHHHHHHHHHHH---
Confidence 9998876321 12456899999875442 3888988765421 1100 0111110 010000
Q ss_pred hhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccch
Q 007480 177 EFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLL 256 (602)
Q Consensus 177 ~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~ 256 (602)
.+ -++ .+ +...+ ++.+.++|++++++..++ .+++ .+|.+
T Consensus 150 ~~---------------~~~-------~~------l~~~~--------~~~~~~LSgGe~qrv~la---raL~-~~p~l- 188 (271)
T PRK14238 150 GA---------------AIW-------DE------LKDRL--------HDNAYGLSGGQQQRLCIA---RCLA-IEPDV- 188 (271)
T ss_pred Hc---------------CCc-------ch------HHHHH--------hcCcccCCHHHHHHHHHH---HHHH-cCCCE-
Confidence 00 000 00 00111 245678899999998888 4444 67777
Q ss_pred hcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 257 RTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 257 ~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
.+.|||+++||+... ..+.+.+.+..+ ...-..+++.. ....+.+.+-.|++|.+-..++..+..
T Consensus 189 --llLDEPt~~LD~~~~---~~l~~~l~~~~~--~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 189 --ILMDEPTSALDPIST---LKVEELVQELKK--DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred --EEEeCCCCcCCHHHH---HHHHHHHHHHHc--CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 789999999999995 456666655533 22233444422 222233455556888875555554443
No 197
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=2.7e-13 Score=137.95 Aligned_cols=219 Identities=16% Similarity=0.228 Sum_probs=128.7
Q ss_pred cccEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCccccccc-CC---Ccc-
Q 007480 30 AFPIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRD-TK---TKG- 101 (602)
Q Consensus 30 ~iplv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~-~~---TkG- 101 (602)
|.+++..++.+.++ . ...+|+++++.+ ++++|+|+||||||||+++|+|.. . .+ +.|
T Consensus 2 ~~~~l~~~~l~~~~--~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----------~~~~~~~~~G~ 66 (252)
T PRK14255 2 AKKIITSSDVHLFY--G--KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMN-----------DLIPGVTITGN 66 (252)
T ss_pred CcceEEEEeEEEEE--C--CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhccc-----------ccCCCCCcccE
Confidence 44566666544333 2 246899999888 899999999999999999999972 1 12 589
Q ss_pred eEEcCcccCcc-----ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccch-hhhHHHHHHHHHHHhhh
Q 007480 102 IWVWGNPVEME-----IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPE-TIREADISRLSFAVELA 175 (602)
Q Consensus 102 Iwi~~~~~~~~-----~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~-~i~e~~l~~L~~~~~L~ 175 (602)
|++.|.++... .....+++++++...+ + .++.||+.+.... +.... ...++.+......+++.
T Consensus 67 i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~---~-~tv~~nl~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~ 135 (252)
T PRK14255 67 VSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPF---P-FSIYENVIYGLRL-------AGVKDKAVLDEAVETSLKQAAIW 135 (252)
T ss_pred EEEcCEEcccccccHHHhcCeEEEEECCCccC---C-CcHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHHcCCc
Confidence 99999876320 1235688998876433 2 4888888765321 11100 00001111111111100
Q ss_pred hhhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccc
Q 007480 176 EEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHL 255 (602)
Q Consensus 176 ~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~ 255 (602)
.+ +...+ ++.+.++|++++++..++ .++. ..|.+
T Consensus 136 ----------------------------~~------i~~~~--------~~~~~~LS~Gq~qrv~la---ral~-~~p~l 169 (252)
T PRK14255 136 ----------------------------DE------VKDHL--------HESALSLSGGQQQRVCIA---RVLA-VKPDV 169 (252)
T ss_pred ----------------------------cc------hhhHH--------hcCcccCCHHHHHHHHHH---HHHh-cCCCE
Confidence 00 00011 345678899999998887 4444 57777
Q ss_pred hhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 256 LRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 256 ~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
.+.|||++.||+... ..+.+.+.+..+ ...-..+++.. ...-+.+.+-.+++|.+-..+...+..
T Consensus 170 ---lllDEPt~~LD~~~~---~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 170 ---ILLDEPTSALDPISS---TQIENMLLELRD--QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred ---EEEcCCCccCCHHHH---HHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 789999999999984 456666655532 22334455532 222223344445888875555554443
No 198
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=3.6e-13 Score=137.15 Aligned_cols=218 Identities=15% Similarity=0.161 Sum_probs=129.3
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccC--CCcc-eEEc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDT--KTKG-IWVW 105 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~--~TkG-Iwi~ 105 (602)
|++..++.+.++ ....+|+++++.+ ++++|+|+||||||||+++|+|+.. . .+ ++.| |.+.
T Consensus 5 ~~i~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-------~--~~~~~~~G~i~~~ 71 (253)
T PRK14261 5 IILSTKNLNLWY----GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMND-------L--IPGCRITGDILYN 71 (253)
T ss_pred ceEEEeeeEEEE----CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhcccc-------C--CCCCCcceEEEEC
Confidence 356665543322 2345899999888 8999999999999999999999730 0 01 2589 9999
Q ss_pred CcccCcc-----ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccch-hhhHHHHHHHHHHHhhhhhhh
Q 007480 106 GNPVEME-----IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPE-TIREADISRLSFAVELAEEFY 179 (602)
Q Consensus 106 ~~~~~~~-----~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~-~i~e~~l~~L~~~~~L~~~i~ 179 (602)
+.++... .....+++++++...+. .++.||+.+.... ++... ...++.+..+...+++.+
T Consensus 72 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~----~tv~eni~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~--- 137 (253)
T PRK14261 72 GENIMDSGADVVALRRKIGMVFQRPNPFP----KSIYENVAYGPRI-------HGEKNKKTLDTIVEKSLKGAALWD--- 137 (253)
T ss_pred CEEccccccchhhhhceEEEEecCCccCc----ccHHHHHHhhHHh-------cCCCCHHHHHHHHHHHHHHhcCch---
Confidence 8876421 12356899999875442 3889998875432 11100 000111111111111100
Q ss_pred cccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcc
Q 007480 180 GRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTK 259 (602)
Q Consensus 180 ~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~ 259 (602)
+ +... .++...++|+++++...++ .++. .+|.+ .
T Consensus 138 -------------------------~------l~~~--------~~~~~~~LS~G~~qrv~la---ral~-~~p~l---l 171 (253)
T PRK14261 138 -------------------------E------VKDR--------LHDSALSLSGGQQQRLCIA---RTLA-VNPEV---I 171 (253)
T ss_pred -------------------------h------hHHH--------hhcChhhCCHHHHHHHHHH---HHHh-cCCCE---E
Confidence 0 0000 1345678899999998888 4444 67777 7
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 260 LCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 260 L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
+.|||+++||+..++ .+.+.+.+..+. ..-..+++.. ...-+.+.+-.+++|.+-..++..+.
T Consensus 172 lLDEP~~gLD~~~~~---~l~~~l~~~~~~--~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 172 LMDEPCSALDPIATA---KIEDLIEDLKKE--YTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred EEeCCcccCCHHHHH---HHHHHHHHHhhC--ceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 899999999999954 555555554332 2223444422 22223345556688887665555444
No 199
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.45 E-value=1.8e-13 Score=170.91 Aligned_cols=197 Identities=14% Similarity=0.054 Sum_probs=134.2
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc--ccCcceEEEee
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME--IDGSRTSVFYL 123 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~--~~~~~~~vvl~ 123 (602)
..+|+++++.| +++||+||||||||||+++|+|. .++++| |++.|.++... ..+..++++.|
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gl------------l~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ 2019 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGD------------TTVTSGDATVAGKSILTNISDVHQNMGYCPQ 2019 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCC------------CCCCccEEEECCEECcchHHHHhhhEEEEec
Confidence 45899999988 99999999999999999999998 488999 99999877421 12456899998
Q ss_pred ccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccC
Q 007480 124 DTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFL 203 (602)
Q Consensus 124 DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~ 203 (602)
+...+ +..|++|++.+.... ++......++.+
T Consensus 2020 ~~~L~---~~LTv~E~L~l~a~l-------~g~~~~~~~~~v-------------------------------------- 2051 (2272)
T TIGR01257 2020 FDAID---DLLTGREHLYLYARL-------RGVPAEEIEKVA-------------------------------------- 2051 (2272)
T ss_pred cccCC---CCCCHHHHHHHHHHh-------cCCCHHHHHHHH--------------------------------------
Confidence 76444 357899998764332 222111111112
Q ss_pred CcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 007480 204 QGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 204 ~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~ 282 (602)
+..|+.++. ...++.+.++|+|++++..++ +..+..|.+ .++|||+++|||..+ ..+.+.
T Consensus 2052 ---------~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA----~ALi~~P~V---LLLDEPTsGLDp~sr---~~l~~l 2112 (2272)
T TIGR01257 2052 ---------NWSIQSLGLSLYADRLAGTYSGGNKRKLSTA----IALIGCPPL---VLLDEPTTGMDPQAR---RMLWNT 2112 (2272)
T ss_pred ---------HHHHHHcCCHHHhcCChhhCCHHHHHHHHHH----HHHhcCCCE---EEEECCCCCCCHHHH---HHHHHH
Confidence 222222222 112456778999999998888 444577887 899999999999994 566666
Q ss_pred HhhhcCCCccceEeeccHH--HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 283 VASVTRPKIVQGKFLNGNE--FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 283 I~~~~~pK~l~g~~ltG~~--l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
|.+..+. .. ...++.+. .++.+++.+-.|++|++-+.++..+.
T Consensus 2113 L~~l~~~-g~-TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~L 2157 (2272)
T TIGR01257 2113 IVSIIRE-GR-AVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHL 2157 (2272)
T ss_pred HHHHHhC-CC-EEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 6655332 22 23444433 33445566667789999888887554
No 200
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.45 E-value=2.8e-13 Score=152.29 Aligned_cols=219 Identities=15% Similarity=0.200 Sum_probs=134.0
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCC-----Ccc-e
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTK-----TKG-I 102 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~-----TkG-I 102 (602)
|++.+++.+..|.-......+|+++++.+ ++++|+||||||||||+++|+|.. ++ +.| |
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~------------~~~~~~~~~G~i 71 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLL------------PSPPVVYPSGDI 71 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCcCCccceEE
Confidence 46777665433311111346899999998 899999999999999999999984 43 789 9
Q ss_pred EEcCcccCccc-------cCcceEEEeecccc-ccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhh
Q 007480 103 WVWGNPVEMEI-------DGSRTSVFYLDTEG-FESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVEL 174 (602)
Q Consensus 103 wi~~~~~~~~~-------~~~~~~vvl~DteG-~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L 174 (602)
++.|.++.... .+..+++++|++.. +. +..++.+++.+.+.. ..+...
T Consensus 72 ~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~---------------- 127 (529)
T PRK15134 72 RFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLN--PLHTLEKQLYEVLSL------HRGMRR---------------- 127 (529)
T ss_pred EECCEecccCCHHHHHHHhcCceEEEecCchhhcC--chhhHHHHHHHHHHH------hcCCCH----------------
Confidence 99988764211 12468999998631 21 234566665443211 000000
Q ss_pred hhhhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCC----CCCCchhhhhHHHHHHhhcCCCcEEEc
Q 007480 175 AEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDK----GDKNIDMVNQIRNSLAIMGDNSTAFSL 250 (602)
Q Consensus 175 ~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~----~~~~i~~ln~~r~~i~~~f~~~~cf~L 250 (602)
....+.++++|+.++... .++.+.++|++++++..++ .++ +
T Consensus 128 -------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iA---raL-~ 172 (529)
T PRK15134 128 -------------------------------EAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIA---MAL-L 172 (529)
T ss_pred -------------------------------HHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHH---HHH-h
Confidence 011223344444443311 1456789999999999998 444 4
Q ss_pred cCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 251 PQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 251 ~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
..|.+ .+.|||++.||+... ..+.+.+.++.+.....-..+|+.. .+..+.+.+-.+.+|.+-..++..+.
T Consensus 173 ~~p~l---lllDEPt~~LD~~~~---~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 244 (529)
T PRK15134 173 TRPEL---LIADEPTTALDVSVQ---AQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATL 244 (529)
T ss_pred cCCCE---EEEcCCCCccCHHHH---HHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 67887 899999999999994 4555566554332233345566632 33334445555678876544444333
No 201
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.45 E-value=2.6e-13 Score=139.64 Aligned_cols=216 Identities=17% Similarity=0.187 Sum_probs=129.1
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccC----CCcc-eE
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDT----KTKG-IW 103 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~----~TkG-Iw 103 (602)
+.+.+++.+.++ . ...+|+++++.+ ++++|+|+||||||||+++|+|.. .+ ++.| |+
T Consensus 18 ~~l~~~nl~~~~--~--~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~~~~~~~~~G~I~ 82 (267)
T PRK14235 18 IKMRARDVSVFY--G--EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMN-----------DTIDGCRVTGKIT 82 (267)
T ss_pred ceEEEEeEEEEE--C--CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc-----------ccccCCCCceEEE
Confidence 356666543333 2 245899999988 999999999999999999999983 22 4889 99
Q ss_pred EcCcccCcc-----ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccc--hhhhHHHHHHHHHHHhhhh
Q 007480 104 VWGNPVEME-----IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLP--ETIREADISRLSFAVELAE 176 (602)
Q Consensus 104 i~~~~~~~~-----~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~--~~i~e~~l~~L~~~~~L~~ 176 (602)
+.+.++... ..+..++++++++..+. .++.||+.++... +... .....+.+..+...+++.+
T Consensus 83 ~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~----~tv~enl~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~l~~ 151 (267)
T PRK14235 83 LDGEDIYDPRLDVVELRARVGMVFQKPNPFP----KSIYENVAYGPRI-------HGLARSKAELDEIVETSLRKAGLWE 151 (267)
T ss_pred ECCEECcccccchHHHhhceEEEecCCCCCC----CcHHHHHHHHHHh-------cccccchHHHHHHHHHHHHHcCCch
Confidence 999876421 12356899998864332 3788988775421 1110 0000111122222212110
Q ss_pred hhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccch
Q 007480 177 EFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLL 256 (602)
Q Consensus 177 ~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~ 256 (602)
. +... .++.+.++|++++++..++ .+++ .+|.+
T Consensus 152 ~----------------------------------~~~~--------~~~~~~~LSgGq~qrv~la---ral~-~~p~l- 184 (267)
T PRK14235 152 E----------------------------------VKDR--------LHEPGTGLSGGQQQRLCIA---RAIA-VSPEV- 184 (267)
T ss_pred h----------------------------------hhHH--------hhCCcccCCHHHHHHHHHH---HHHH-cCCCE-
Confidence 0 0000 1245678899999999888 4444 67777
Q ss_pred hcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 257 RTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 257 ~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
.+.|||++.||+... ..+.+.+.+..+ ...-..+++. ....-+.+.+-.+++|.+-..++..+.
T Consensus 185 --llLDEPt~~LD~~~~---~~l~~~L~~l~~--~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 185 --ILMDEPCSALDPIAT---AKVEELIDELRQ--NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKM 249 (267)
T ss_pred --EEEeCCCcCCCHHHH---HHHHHHHHHHhc--CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 789999999999994 456666655532 2222344442 222223344555678877555554443
No 202
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=4e-13 Score=136.75 Aligned_cols=203 Identities=17% Similarity=0.237 Sum_probs=123.6
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCccccccc--C--CCcc-eEEcCcccCcc-----ccCc
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRD--T--KTKG-IWVWGNPVEME-----IDGS 116 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~--~--~TkG-Iwi~~~~~~~~-----~~~~ 116 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|.. . + ++.| |++.+.++... ..+.
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~ 85 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMH-----------DLVPSARVTGKILLDDTDIYDRGVDPVSIRR 85 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc-----------cCCCCCCCceEEEECCEEcccccCChHHhhc
Confidence 45899999888 899999999999999999999983 1 1 2689 99999876421 1245
Q ss_pred ceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccc-hhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccch
Q 007480 117 RTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLP-ETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLV 195 (602)
Q Consensus 117 ~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~-~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~fl 195 (602)
.+++++++..-+ +..++.||+.+.... +... ....++.+..+...+++...
T Consensus 86 ~i~~~~q~~~~~---~~~tv~enl~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~~------------------ 137 (252)
T PRK14256 86 RVGMVFQKPNPF---PAMSIYDNVIAGYKL-------NGRVNRSEADEIVESSLKRVALWDE------------------ 137 (252)
T ss_pred cEEEEecCCCCC---CcCcHHHHHHhHHHh-------cCCCCHHHHHHHHHHHHHHcCCchh------------------
Confidence 689999986533 356888888764321 1100 00001111111111111000
Q ss_pred hhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHH
Q 007480 196 WLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKR 275 (602)
Q Consensus 196 w~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~ 275 (602)
++..+ ++.+.++|+++++...++ .+++ .+|.+ .+.|||+++||+...
T Consensus 138 ----------------~~~~~--------~~~~~~LS~G~~qrl~la---ral~-~~p~l---lllDEP~~gLD~~~~-- 184 (252)
T PRK14256 138 ----------------VKDRL--------KSNAMELSGGQQQRLCIA---RTIA-VKPEV---ILMDEPASALDPIST-- 184 (252)
T ss_pred ----------------hhHHh--------hCCcCcCCHHHHHHHHHH---HHHh-cCCCE---EEEcCCcccCCHHHH--
Confidence 00001 234678899999998888 5554 67777 789999999999984
Q ss_pred HHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 276 REQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 276 ~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
..+.+.+.+..+. ..-..+++.. ...-+.+.+-.|++|.+-..++..+.
T Consensus 185 -~~l~~~l~~~~~~--~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 185 -LKIEELIEELKEK--YTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred -HHHHHHHHHHHhC--CcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 4556666555432 2233444432 22223445555688887555555444
No 203
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=2.3e-13 Score=134.42 Aligned_cols=170 Identities=15% Similarity=0.107 Sum_probs=110.8
Q ss_pred ccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccC---CCcc-eEEcCcccCcc--ccCcce
Q 007480 48 EGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDT---KTKG-IWVWGNPVEME--IDGSRT 118 (602)
Q Consensus 48 eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~---~TkG-Iwi~~~~~~~~--~~~~~~ 118 (602)
+...+|+++++.+ ++++|+|+||||||||+++|+|.. + ++.| |++.+.++... .....+
T Consensus 18 ~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~~~~G~i~i~g~~~~~~~~~~~~~i 85 (202)
T cd03233 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRT------------EGNVSVEGDIHYNGIPYKEFAEKYPGEI 85 (202)
T ss_pred CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccC------------CCCCCcceEEEECCEECccchhhhcceE
Confidence 3456899999888 899999999999999999999983 5 7899 99998876421 124568
Q ss_pred EEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhh
Q 007480 119 SVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLI 198 (602)
Q Consensus 119 ~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~v 198 (602)
++++++...+ +..++.|++.++... .
T Consensus 86 ~~~~q~~~~~---~~~tv~~~l~~~~~~-------~-------------------------------------------- 111 (202)
T cd03233 86 IYVSEEDVHF---PTLTVRETLDFALRC-------K-------------------------------------------- 111 (202)
T ss_pred EEEecccccC---CCCcHHHHHhhhhhh-------c--------------------------------------------
Confidence 8888875433 245788877653211 0
Q ss_pred hhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHH
Q 007480 199 QRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQ 278 (602)
Q Consensus 199 vRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~ 278 (602)
.++.+..+|++++++..++ .++ +.+|.+ .+.|||++.||++.. +.
T Consensus 112 -------------------------~~~~~~~LS~Ge~qrl~la---ral-~~~p~l---lllDEPt~~LD~~~~---~~ 156 (202)
T cd03233 112 -------------------------GNEFVRGISGGERKRVSIA---EAL-VSRASV---LCWDNSTRGLDSSTA---LE 156 (202)
T ss_pred -------------------------cccchhhCCHHHHHHHHHH---HHH-hhCCCE---EEEcCCCccCCHHHH---HH
Confidence 0123345677777777776 333 367777 889999999999994 45
Q ss_pred HHHHHhhhcCCCccceEeeccH--HHHHHHHHHHHHHcCCCC
Q 007480 279 LKKLVASVTRPKIVQGKFLNGN--EFVAFMEQILEALNKGEI 318 (602)
Q Consensus 279 L~~~I~~~~~pK~l~g~~ltG~--~l~~lv~~yv~aINsG~v 318 (602)
+.+.+.+..+.....-..++.. .....+.+.+-.+++|++
T Consensus 157 ~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i 198 (202)
T cd03233 157 ILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQ 198 (202)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEE
Confidence 6666665543212121223332 222333444445566654
No 204
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.45 E-value=1.8e-13 Score=155.46 Aligned_cols=200 Identities=16% Similarity=0.147 Sum_probs=137.5
Q ss_pred cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEEE
Q 007480 49 GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSVF 121 (602)
Q Consensus 49 al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~vv 121 (602)
...+|+++++.+ +.++|+|++|||||||++.|+|. . |++| |.++|.++..- ..++.++++
T Consensus 362 ~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~------------~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v 428 (588)
T PRK11174 362 GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF------------L-PYQGSLKINGIELRELDPESWRKHLSWV 428 (588)
T ss_pred CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------C-CCCcEEEECCEecccCCHHHHHhheEEe
Confidence 356899999988 99999999999999999999998 5 7899 99999887531 235689999
Q ss_pred eeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhc
Q 007480 122 YLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRD 201 (602)
Q Consensus 122 l~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRD 201 (602)
.||+.-|+ +|++||+.++- ...+++++.+.....++.+.+.. .|
T Consensus 429 ~Q~~~LF~----~TI~eNI~~g~-------------~~~~~eei~~al~~a~l~~~i~~---------lp---------- 472 (588)
T PRK11174 429 GQNPQLPH----GTLRDNVLLGN-------------PDASDEQLQQALENAWVSEFLPL---------LP---------- 472 (588)
T ss_pred cCCCcCCC----cCHHHHhhcCC-------------CCCCHHHHHHHHHHhCHHHHHHh---------cc----------
Confidence 99998774 59999987631 23556777777777666554321 12
Q ss_pred cCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHH
Q 007480 202 FLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKK 281 (602)
Q Consensus 202 f~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~ 281 (602)
+|. +.. ++ +.-..+|+|++|+.+++ +++. ..|.+ .+.|||++.||++..+ .+.+
T Consensus 473 --~G~------dT~---vg-----e~G~~LSGGQrQRialA---RAll-~~~~I---liLDE~TSaLD~~te~---~i~~ 526 (588)
T PRK11174 473 --QGL------DTP---IG-----DQAAGLSVGQAQRLALA---RALL-QPCQL---LLLDEPTASLDAHSEQ---LVMQ 526 (588)
T ss_pred --ccc------ccc---cc-----cCCCCCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCccCCCHHHHH---HHHH
Confidence 121 000 11 11246899999999998 6665 56666 7899999999999844 4555
Q ss_pred HHhhhcCCCccceEeeccHHHHHHHH--HHHHHHcCCCCCCCcchHHH
Q 007480 282 LVASVTRPKIVQGKFLNGNEFVAFME--QILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 282 ~I~~~~~pK~l~g~~ltG~~l~~lv~--~yv~aINsG~vP~~~sl~e~ 327 (602)
.+.+..+.++ -..++++. +.++ +.+-.+++|.+-..++-.+.
T Consensus 527 ~l~~~~~~~T--vIiItHrl--~~i~~aD~Iivl~~G~i~e~G~~~eL 570 (588)
T PRK11174 527 ALNAASRRQT--TLMVTHQL--EDLAQWDQIWVMQDGQIVQQGDYAEL 570 (588)
T ss_pred HHHHHhCCCE--EEEEecCh--HHHHhCCEEEEEeCCeEeecCCHHHH
Confidence 5655543333 45677754 2222 22223477887766665444
No 205
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.45 E-value=8.1e-13 Score=129.73 Aligned_cols=156 Identities=17% Similarity=0.079 Sum_probs=103.8
Q ss_pred cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc--cCcceEEEe
Q 007480 49 GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI--DGSRTSVFY 122 (602)
Q Consensus 49 al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~--~~~~~~vvl 122 (602)
...+|+++++.+ ++++|+||||||||||++.|+|. .+++.| |++.+.++.... ....++++.
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL------------LRPDSGEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCccEEEECCEEcccchHHhhhheEEec
Confidence 345899999888 99999999999999999999998 478999 999987754211 234677887
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
++...+ +..++.|++.+.... ++ ..++.+..+...+++.+
T Consensus 80 q~~~~~---~~~tv~~~l~~~~~~-------~~----~~~~~~~~~l~~~~l~~-------------------------- 119 (198)
T TIGR01189 80 HLPGLK---PELSALENLHFWAAI-------HG----GAQRTIEDALAAVGLTG-------------------------- 119 (198)
T ss_pred cCcccc---cCCcHHHHHHHHHHH-------cC----CcHHHHHHHHHHcCCHH--------------------------
Confidence 764332 246888887654321 11 00112222222222110
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~ 282 (602)
..++.+.++|++++++..++ .+++ ..|.+ .+.|||+++||+... ..+.+.
T Consensus 120 --------------------~~~~~~~~LS~G~~qrv~la---~al~-~~p~l---lllDEPt~~LD~~~~---~~l~~~ 169 (198)
T TIGR01189 120 --------------------FEDLPAAQLSAGQQRRLALA---RLWL-SRAPL---WILDEPTTALDKAGV---ALLAGL 169 (198)
T ss_pred --------------------HhcCChhhcCHHHHHHHHHH---HHHh-cCCCE---EEEeCCCcCCCHHHH---HHHHHH
Confidence 01244567889998888887 4444 67777 789999999999984 455555
Q ss_pred Hhhh
Q 007480 283 VASV 286 (602)
Q Consensus 283 I~~~ 286 (602)
+.+.
T Consensus 170 l~~~ 173 (198)
T TIGR01189 170 LRAH 173 (198)
T ss_pred HHHH
Confidence 6554
No 206
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.45 E-value=1.5e-13 Score=155.79 Aligned_cols=209 Identities=15% Similarity=0.179 Sum_probs=140.8
Q ss_pred eEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---cc
Q 007480 42 KLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---ID 114 (602)
Q Consensus 42 ~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~ 114 (602)
.|.+++....+|+++++.+ +.++|+|++|||||||++.|+|+ .+|++| |.++|.++..- ..
T Consensus 348 sf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl------------~~p~~G~I~i~g~~i~~~~~~~~ 415 (582)
T PRK11176 348 TFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRF------------YDIDEGEILLDGHDLRDYTLASL 415 (582)
T ss_pred EEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhc------------cCCCCceEEECCEEhhhcCHHHH
Confidence 3444444466999999988 99999999999999999999998 488999 99999887531 23
Q ss_pred CcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccc
Q 007480 115 GSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKL 194 (602)
Q Consensus 115 ~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~f 194 (602)
+..++++.||+.-|+ +|++||+.++ + ....+++++.+....+++.+.+.. .|
T Consensus 416 ~~~i~~v~Q~~~lf~----~Ti~~Ni~~~-----------~-~~~~~~~~i~~al~~~~l~~~i~~---------lp--- 467 (582)
T PRK11176 416 RNQVALVSQNVHLFN----DTIANNIAYA-----------R-TEQYSREQIEEAARMAYAMDFINK---------MD--- 467 (582)
T ss_pred HhhceEEccCceeec----chHHHHHhcC-----------C-CCCCCHHHHHHHHHHhCcHHHHHh---------cc---
Confidence 567999999987774 5899998752 1 123456677777776666544321 12
Q ss_pred hhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHH
Q 007480 195 VWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVK 274 (602)
Q Consensus 195 lw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e 274 (602)
+|. ...- .+.-.++|+|++|+..++ +++. ..|.+ .+.|||++.||++..
T Consensus 468 ---------~Gl----------dt~i----g~~g~~LSGGqrQRi~LA---Rall-~~~~i---lilDEptsaLD~~t~- 516 (582)
T PRK11176 468 ---------NGL----------DTVI----GENGVLLSGGQRQRIAIA---RALL-RDSPI---LILDEATSALDTESE- 516 (582)
T ss_pred ---------ccc----------Ccee----CCCCCcCCHHHHHHHHHH---HHHH-hCCCE---EEEECccccCCHHHH-
Confidence 111 0000 011246899999999888 6665 56666 789999999999984
Q ss_pred HHHHHHHHHhhhcCCCccceEeeccHHHHHHHH--HHHHHHcCCCCCCCcchHHH
Q 007480 275 RREQLKKLVASVTRPKIVQGKFLNGNEFVAFME--QILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 275 ~~~~L~~~I~~~~~pK~l~g~~ltG~~l~~lv~--~yv~aINsG~vP~~~sl~e~ 327 (602)
..+.+.+.+..+. .....++++. +.++ +.+-.+++|++...++-.+.
T Consensus 517 --~~i~~~l~~~~~~--~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e~g~~~~l 565 (582)
T PRK11176 517 --RAIQAALDELQKN--RTSLVIAHRL--STIEKADEILVVEDGEIVERGTHAEL 565 (582)
T ss_pred --HHHHHHHHHHhCC--CEEEEEecch--HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 4566666655332 2345677654 2232 22333478888776664443
No 207
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.45 E-value=1.8e-13 Score=155.71 Aligned_cols=202 Identities=16% Similarity=0.205 Sum_probs=137.5
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc---cccCcceEEEe
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM---EIDGSRTSVFY 122 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~---~~~~~~~~vvl 122 (602)
..+|+++++.+ +.++|+|++|||||||++.|+|. .+|++| |.++|.++.. ...++.++++.
T Consensus 354 ~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl------------~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~ 421 (592)
T PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY------------YPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQ 421 (592)
T ss_pred CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc------------cCCCCceEEECCEEhhhCCHHHHHhheEEEc
Confidence 46899999988 99999999999999999999998 488999 9999988753 12367899999
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
||+..|+ +|++||+.++ + ..+++++.++...+++.+.+.. .|
T Consensus 422 Q~~~lF~----~Ti~~NI~~~-----------~---~~~d~~i~~a~~~~gl~~~i~~---------lp----------- 463 (592)
T PRK10790 422 QDPVVLA----DTFLANVTLG-----------R---DISEEQVWQALETVQLAELARS---------LP----------- 463 (592)
T ss_pred cCCcccc----chHHHHHHhC-----------C---CCCHHHHHHHHHHcCcHHHHHh---------cc-----------
Confidence 9998885 4899998762 2 2455667777776666554421 12
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~ 282 (602)
+|. +..+ .+.-..+|+|++|+..++ +++. ..|.+ .+.|||++.||++..+ .+.+.
T Consensus 464 -~Gl------dt~i--------~e~g~~LSGGqrQRialA---RaLl-~~~~i---lllDEpts~LD~~t~~---~i~~~ 518 (592)
T PRK10790 464 -DGL------YTPL--------GEQGNNLSVGQKQLLALA---RVLV-QTPQI---LILDEATANIDSGTEQ---AIQQA 518 (592)
T ss_pred -ccc------cccc--------cCCCCCCCHHHHHHHHHH---HHHH-hCCCE---EEEeCCcccCCHHHHH---HHHHH
Confidence 111 0000 012246899999999888 6665 45555 6899999999999844 55555
Q ss_pred HhhhcCCCccceEeeccHHHHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 283 VASVTRPKIVQGKFLNGNEFVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 283 I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
+.+..+.+ .-..++++.-.--..+.+-.+++|++-..++-.+..
T Consensus 519 l~~~~~~~--tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 519 LAAVREHT--TLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred HHHHhCCC--EEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 65554333 335666654211112233335778887777665543
No 208
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.45 E-value=2.7e-13 Score=152.16 Aligned_cols=170 Identities=21% Similarity=0.201 Sum_probs=121.1
Q ss_pred EEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc--cccCc
Q 007480 43 LRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM--EIDGS 116 (602)
Q Consensus 43 l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~--~~~~~ 116 (602)
|.+++ ...+|+++|+.+ +.++|+||+|||||||+|.|+|. .+|++| |.++|.++.. ...++
T Consensus 342 f~Y~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~------------~~p~~G~I~i~g~~i~~~~~~lr~ 408 (529)
T TIGR02868 342 FGYPG-SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGL------------LDPLQGEVTLDGVSVSSLQDELRR 408 (529)
T ss_pred EecCC-CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCcEEEECCEEhhhHHHHHHh
Confidence 44433 235899999988 99999999999999999999998 489999 9999987652 22356
Q ss_pred ceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchh
Q 007480 117 RTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVW 196 (602)
Q Consensus 117 ~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw 196 (602)
.+++|.||+.-|. +|++||+.++- ...+++++.+....+++.+.+.. .|
T Consensus 409 ~i~~V~Q~~~lF~----~TI~eNI~~g~-------------~~~~~e~i~~al~~a~l~~~i~~---------lp----- 457 (529)
T TIGR02868 409 RISVFAQDAHLFD----TTVRDNLRLGR-------------PDATDEELWAALERVGLADWLRS---------LP----- 457 (529)
T ss_pred heEEEccCccccc----ccHHHHHhccC-------------CCCCHHHHHHHHHHcCCHHHHHh---------Cc-----
Confidence 7999999998774 48999988631 23456667777776666554321 12
Q ss_pred hhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHH
Q 007480 197 LIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRR 276 (602)
Q Consensus 197 ~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~ 276 (602)
+|. +..+ + +.-..+|+|++|+.+++ +++. ..|.+ .+.|||++.||++..
T Consensus 458 -------~Gl------dT~i---g-----e~G~~LSGGQrQRiaiA---Rall-~~~~i---liLDE~TSaLD~~te--- 506 (529)
T TIGR02868 458 -------DGL------DTVL---G-----EGGARLSGGERQRLALA---RALL-ADAPI---LLLDEPTEHLDAGTE--- 506 (529)
T ss_pred -------ccc------cchh---c-----cccCcCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCcccCCHHHH---
Confidence 111 0001 1 11246899999999998 6665 56666 789999999999984
Q ss_pred HHHHHHHhhhc
Q 007480 277 EQLKKLVASVT 287 (602)
Q Consensus 277 ~~L~~~I~~~~ 287 (602)
..+.+.+.+..
T Consensus 507 ~~I~~~l~~~~ 517 (529)
T TIGR02868 507 SELLEDLLAAL 517 (529)
T ss_pred HHHHHHHHHhc
Confidence 34555555543
No 209
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=4e-13 Score=139.81 Aligned_cols=220 Identities=15% Similarity=0.196 Sum_probs=129.8
Q ss_pred cccEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccC--CCcc-eE
Q 007480 30 AFPIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDT--KTKG-IW 103 (602)
Q Consensus 30 ~iplv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~--~TkG-Iw 103 (602)
+-|++.+++.+. .+. ...+|+++++.+ ++++|+|+||||||||+++|+|+.. ..+ ++.| |+
T Consensus 36 ~~~~l~~~~l~~--~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~---------~~p~~~~~G~I~ 102 (286)
T PRK14275 36 GKPHVVAKNFSI--YYG--EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMND---------LIPSCHTTGALM 102 (286)
T ss_pred CceEEEEeeeEE--EEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccc---------cCCCCCCceEEE
Confidence 345666665433 222 345899999888 8999999999999999999999620 012 4899 99
Q ss_pred EcCcccCcc-----ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccch-hhhHHHHHHHHHHHhhhhh
Q 007480 104 VWGNPVEME-----IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPE-TIREADISRLSFAVELAEE 177 (602)
Q Consensus 104 i~~~~~~~~-----~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~-~i~e~~l~~L~~~~~L~~~ 177 (602)
+.|.++... ..+..+++++++...+ + .++.||+.+.... +.... ...++.+..+...+++.+
T Consensus 103 ~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~---~-~tv~enl~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~- 170 (286)
T PRK14275 103 FDGEDIYGKFTDEVLLRKKIGMVFQKPNPF---P-KSIFDNIAYGPRL-------HGINDKKQLEEIVEKSLRKAALWD- 170 (286)
T ss_pred ECCEEhhhcccchHHhhhcEEEECCCCCCC---c-cCHHHHHHhHHHh-------cCCCcHHHHHHHHHHHHHHhCCcc-
Confidence 988765321 1245689999986433 2 3899998875422 11100 000111112111111100
Q ss_pred hhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchh
Q 007480 178 FYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLR 257 (602)
Q Consensus 178 i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~ 257 (602)
+ +... .++.+.++|++++++..++ ++++ ..|.+
T Consensus 171 ---------------------------~------l~~~--------~~~~~~~LSgGq~qrv~LA---raL~-~~p~l-- 203 (286)
T PRK14275 171 ---------------------------E------VSDR--------LDKNALGLSGGQQQRLCVA---RTLA-VEPEI-- 203 (286)
T ss_pred ---------------------------c------hhhH--------hhCChhhCCHHHHHHHHHH---HHHh-cCCCE--
Confidence 0 0000 1345678999999999888 4444 67777
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 258 TKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 258 ~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
.+.|||+++||+...+ .+.+.+.+..+ ...-..+++. ....-+.+.+-.+++|.+-..++..+.
T Consensus 204 -llLDEPt~gLD~~~~~---~l~~~L~~~~~--~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 204 -LLLDEPTSALDPKATA---KIEDLIQELRG--SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred -EEEeCCCccCCHHHHH---HHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 8899999999999954 55555555432 2222344442 222223344455578877555554443
No 210
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=4.5e-13 Score=136.13 Aligned_cols=213 Identities=17% Similarity=0.236 Sum_probs=127.8
Q ss_pred EEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccC-----CCcc-eE
Q 007480 33 IVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDT-----KTKG-IW 103 (602)
Q Consensus 33 lv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~-----~TkG-Iw 103 (602)
++.+++.+..+ ....+|+++++.+ ++++|+|+|||||||||++|+|.. + ++.| |.
T Consensus 3 ~l~~~~l~~~~----~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~------------~~~~~~~~~G~i~ 66 (250)
T PRK14262 3 IIEIENFSAYY----GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMN------------DHIPGFRVEGKIY 66 (250)
T ss_pred eEEEEeeEEEe----CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccc------------cCCCCCCcceEEE
Confidence 45555443322 2345899999988 899999999999999999999973 3 3789 99
Q ss_pred EcCcccCcc-----ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccch-hhhHHHHHHHHHHHhhhhh
Q 007480 104 VWGNPVEME-----IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPE-TIREADISRLSFAVELAEE 177 (602)
Q Consensus 104 i~~~~~~~~-----~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~-~i~e~~l~~L~~~~~L~~~ 177 (602)
+.+.++... .....+++++++..-+ + .++.||+.+.... ++... ...++.+..+...+++.+
T Consensus 67 i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~---~-~tv~e~l~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~- 134 (250)
T PRK14262 67 FKGQDIYDPQLDVTEYRKKVGMVFQKPTPF---P-MSIYDNVAFGPRI-------HGVKSKHKLDRIVEESLKKAALWD- 134 (250)
T ss_pred ECCEEcccchhhHHHhhhhEEEEecCCccC---c-ccHHHHHHHHHHH-------cCCCcHHHHHHHHHHHHHHcCCCc-
Confidence 998776421 1235689999886433 2 5888888765421 11110 001111111111111100
Q ss_pred hhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchh
Q 007480 178 FYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLR 257 (602)
Q Consensus 178 i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~ 257 (602)
.++.. .++.+.++|++++++..++ .+++ .+|.+
T Consensus 135 ---------------------------------~~~~~--------~~~~~~~LS~Gq~qr~~la---~al~-~~p~l-- 167 (250)
T PRK14262 135 ---------------------------------EVKSE--------LNKPGTRLSGGQQQRLCIA---RALA-VEPEV-- 167 (250)
T ss_pred ---------------------------------hhHHH--------HhCChhhcCHHHHHHHHHH---HHHh-CCCCE--
Confidence 00000 1345678899999998888 4444 67777
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHH
Q 007480 258 TKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVE 326 (602)
Q Consensus 258 ~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e 326 (602)
.+.|||+++||+... ..+.+.+.+..+ ...-..+++.. ....+.+.+-.+++|.+-..++..+
T Consensus 168 -lllDEP~~~LD~~~~---~~l~~~l~~~~~--~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14262 168 -ILLDEPTSALDPIAT---QRIEKLLEELSE--NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTRE 231 (250)
T ss_pred -EEEeCCccccCHHHH---HHHHHHHHHHhc--CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 789999999999994 566666666533 22223444432 2222334444557787754444433
No 211
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.44 E-value=3e-13 Score=137.45 Aligned_cols=202 Identities=20% Similarity=0.290 Sum_probs=121.3
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccC----CCcc-eEEcCcccCcc-----ccCc
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDT----KTKG-IWVWGNPVEME-----IDGS 116 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~----~TkG-Iwi~~~~~~~~-----~~~~ 116 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|.. .+ ++.| |++.|+++... ..+.
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-----------~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 84 (250)
T PRK14240 16 FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMN-----------DLIPSVKIEGEVLLDGQDIYKSDIDVNQLRK 84 (250)
T ss_pred ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccc-----------cccCCCCCceEEEECCEEccccccchHHHhc
Confidence 35899999888 899999999999999999999973 11 2689 99999876421 1245
Q ss_pred ceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccc-hhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccch
Q 007480 117 RTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLP-ETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLV 195 (602)
Q Consensus 117 ~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~-~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~fl 195 (602)
.+++++++...+ + .++.||+.+.... +... ....++.++++...+++.+.
T Consensus 85 ~i~~~~q~~~~~---~-~t~~~ni~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~~------------------ 135 (250)
T PRK14240 85 RVGMVFQQPNPF---P-MSIYDNVAYGPRT-------HGIKDKKKLDEIVEKSLKGAALWDE------------------ 135 (250)
T ss_pred cEEEEecCCccC---c-ccHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHHcCCchh------------------
Confidence 688998876433 2 5888888765321 1110 00011112221111111000
Q ss_pred hhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHH
Q 007480 196 WLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKR 275 (602)
Q Consensus 196 w~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~ 275 (602)
+...+ ++.+.++|++++++..++ .++. ..|.+ .+.|||++.||+...
T Consensus 136 ----------------l~~~~--------~~~~~~LS~G~~qrv~la---ral~-~~p~l---lllDEP~~~LD~~~~-- 182 (250)
T PRK14240 136 ----------------VKDRL--------KKSALGLSGGQQQRLCIA---RALA-VEPEV---LLMDEPTSALDPIST-- 182 (250)
T ss_pred ----------------hHHHH--------hcCCCCCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCCccCCHHHH--
Confidence 00001 245678899999998888 4444 67777 789999999999994
Q ss_pred HHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 276 REQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 276 ~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
..+.+.+.+..+ ...-..+++.. ...-+.+.+-.+++|.+-..++..+.
T Consensus 183 -~~l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 183 -LKIEELIQELKK--DYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred -HHHHHHHHHHhc--CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 456666665532 22223444432 12222334444577877555554443
No 212
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=3.3e-13 Score=139.13 Aligned_cols=207 Identities=16% Similarity=0.208 Sum_probs=126.5
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccC----CCcc-eE
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDT----KTKG-IW 103 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~----~TkG-Iw 103 (602)
+++.+++.+.+ +. ...+|+++++.+ ++++|+|+||||||||+++|+|.. .+ +++| |.
T Consensus 12 ~~l~i~nl~~~--~~--~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----------~~~~~~p~~G~v~ 76 (269)
T PRK14259 12 IIISLQNVTIS--YG--TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMN-----------DLIEGCSLKGRVL 76 (269)
T ss_pred ceEEEEeEEEE--EC--CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-----------cccCCCCCceEEE
Confidence 45666654332 22 346899999988 899999999999999999999973 11 5899 99
Q ss_pred EcCcccCc-----cccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhh
Q 007480 104 VWGNPVEM-----EIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEF 178 (602)
Q Consensus 104 i~~~~~~~-----~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i 178 (602)
+.+.++.. ...+..+++++++...+ + .++.||+.+.... ...... .++.+.++...+++..
T Consensus 77 ~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~---~-~tv~enl~~~~~~-------~~~~~~-~~~~~~~~l~~~~l~~-- 142 (269)
T PRK14259 77 FDGTDLYDPRVDPVEVRRRIGMVFQQPNPF---P-KSIYENIAFGARI-------NGYTGD-MDELVERSLRKAAVWD-- 142 (269)
T ss_pred ECCEEcccccCCHHHHhhceEEEccCCccc---h-hhHHHHHhhhhhh-------cCCcHH-HHHHHHHHHHHhCCcc--
Confidence 98877531 11235689999987533 2 3888888765421 111100 1111121111111100
Q ss_pred hcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhc
Q 007480 179 YGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRT 258 (602)
Q Consensus 179 ~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~ 258 (602)
+ ++..+ ++.+.++|++++++..++ .++ +.+|.+
T Consensus 143 --------------------------~------l~~~~--------~~~~~~LS~G~~qrl~la---ral-~~~p~l--- 175 (269)
T PRK14259 143 --------------------------E------CKDKL--------NESGYSLSGGQQQRLCIA---RTI-AIEPEV--- 175 (269)
T ss_pred --------------------------h------hhhhh--------CCCcccCCHHHHHHHHHH---HHH-hcCCCE---
Confidence 0 00111 345678999999998888 444 467777
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCC
Q 007480 259 KLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIP 319 (602)
Q Consensus 259 ~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP 319 (602)
.+.|||+++||+... ..+.+.+.+..+ ...-..+|+. .....+.+++-.++.|.+|
T Consensus 176 llLDEPt~gLD~~~~---~~l~~~l~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~~~~~ 232 (269)
T PRK14259 176 ILMDEPCSALDPIST---LKIEETMHELKK--NFTIVIVTHNMQQAVRVSDMTAFFNAEEVE 232 (269)
T ss_pred EEEcCCCccCCHHHH---HHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCEEEEEeccccc
Confidence 899999999999984 456666665532 2223445553 2334455556666765554
No 213
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.44 E-value=2.5e-13 Score=133.53 Aligned_cols=188 Identities=16% Similarity=0.186 Sum_probs=129.2
Q ss_pred EEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc---cC
Q 007480 43 LRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI---DG 115 (602)
Q Consensus 43 l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~---~~ 115 (602)
+...+....+|+++++.+ ++|.|+|.||+|||||+|.|+|. .++|.| |.+.+.++...+ ..
T Consensus 12 ~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~------------l~~t~G~I~Idg~dVtk~~~~~RA 79 (263)
T COG1101 12 FKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGD------------LKPTSGQILIDGVDVTKKSVAKRA 79 (263)
T ss_pred cCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCc------------cccCCceEEECceecccCCHHHHh
Confidence 333456778999999998 89999999999999999999998 489999 999999887533 23
Q ss_pred cceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccch
Q 007480 116 SRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLV 195 (602)
Q Consensus 116 ~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~fl 195 (602)
..++-||||+.- +..+.+|+.||++.+..- ++--.+.+.
T Consensus 80 ~~larVfQdp~~-gt~~~lTieENl~la~~R-------------------------------------g~~rgl~~~--- 118 (263)
T COG1101 80 NLLARVFQDPLA-GTAPELTIEENLALAESR-------------------------------------GKKRGLSSA--- 118 (263)
T ss_pred hHHHHHhcchhh-CCcccccHHHHHHHHHhc-------------------------------------Ccccccchh---
Confidence 446789999853 344688999998876532 111111110
Q ss_pred hhhhhccCCcccHHHHHHHHHHhCCC---CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHH
Q 007480 196 WLIQRDFLQGKSVQEMVHDALQRVPN---DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIY 272 (602)
Q Consensus 196 w~vvRDf~~g~t~~eyLe~aL~~~~~---~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F 272 (602)
-+.+-.++..+.|+..+. +.-++.+.-+|++++|-.++. ..++.+|.+ .|+||.+..|||..
T Consensus 119 --------ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~----MAtl~~pki---LLLDEHTAALDPkt 183 (263)
T COG1101 119 --------LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLL----MATLHPPKI---LLLDEHTAALDPKT 183 (263)
T ss_pred --------hhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHH----HHhcCCCcE---EEecchhhcCCcch
Confidence 001112222223333221 112466788999998877765 556788988 89999999999998
Q ss_pred HHHHHHHHHHHhhhcCCCccceEeeccHH
Q 007480 273 VKRREQLKKLVASVTRPKIVQGKFLNGNE 301 (602)
Q Consensus 273 ~e~~~~L~~~I~~~~~pK~l~g~~ltG~~ 301 (602)
.+.+-++...|-+ ...++-..+|+.+
T Consensus 184 a~~vm~lT~kiV~---~~klTtlMVTHnm 209 (263)
T COG1101 184 AEFVMELTAKIVE---EHKLTTLMVTHNM 209 (263)
T ss_pred HHHHHHHHHHHHH---hcCCceEEEeccH
Confidence 7767666554443 3456667788754
No 214
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=5.4e-13 Score=138.75 Aligned_cols=214 Identities=18% Similarity=0.257 Sum_probs=129.9
Q ss_pred cccEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccC----CCcc-
Q 007480 30 AFPIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDT----KTKG- 101 (602)
Q Consensus 30 ~iplv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~----~TkG- 101 (602)
+-|++.+++.+.++ . ...+|+++++.+ ++++|+|+||||||||+++|+|.. .+ ++.|
T Consensus 36 ~~~~l~i~~l~~~~--~--~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~-----------~~~~~~p~~G~ 100 (285)
T PRK14254 36 GETVIEARDLNVFY--G--DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMN-----------DLIDAARVEGE 100 (285)
T ss_pred CCceEEEEEEEEEE--C--CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC-----------CcccCCCCceE
Confidence 44567776543333 2 346899999988 899999999999999999999983 11 5899
Q ss_pred eEEcCcccCcc-----ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhh
Q 007480 102 IWVWGNPVEME-----IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAE 176 (602)
Q Consensus 102 Iwi~~~~~~~~-----~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~ 176 (602)
|++.|.++... ..+..+++++++...+. .++.||+.+.+.. ..... ...+.+..+...+++..
T Consensus 101 I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~----~tv~enl~~~~~~-------~~~~~-~~~~~~~~~l~~~~l~~ 168 (285)
T PRK14254 101 LTFRGKNVYDADVDPVALRRRIGMVFQKPNPFP----KSIYDNVAYGLKI-------QGYDG-DIDERVEESLRRAALWD 168 (285)
T ss_pred EEECCEEccccccchHhhhccEEEEecCCccCc----CCHHHHHHHHHHH-------cCCcH-HHHHHHHHHHHHcCCCc
Confidence 99988775321 12456899999875332 3788888765432 11110 01111222221111100
Q ss_pred hhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccch
Q 007480 177 EFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLL 256 (602)
Q Consensus 177 ~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~ 256 (602)
. ++..+ ++.+.++|++++++..++ .++ +..|.+
T Consensus 169 ~----------------------------------i~~~~--------~~~~~~LSgGe~qrv~LA---raL-~~~p~l- 201 (285)
T PRK14254 169 E----------------------------------VKDQL--------DSSGLDLSGGQQQRLCIA---RAI-APDPEV- 201 (285)
T ss_pred h----------------------------------hHHHH--------hCCcccCCHHHHHHHHHH---HHH-HcCCCE-
Confidence 0 00011 345678999999999888 444 477877
Q ss_pred hcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHHHHHHHHHHHH----HHcCCCCCCCcchHH
Q 007480 257 RTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNEFVAFMEQILE----ALNKGEIPSTGSLVE 326 (602)
Q Consensus 257 ~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~l~~lv~~yv~----aINsG~vP~~~sl~e 326 (602)
.+.|||+++||+... ..+.+.|.+..+ + ..-..+++. . ..+..+.+ .+++|.+-..+...+
T Consensus 202 --LLLDEPts~LD~~~~---~~l~~~L~~~~~-~-~tiii~tH~-~-~~i~~~~dri~v~l~~G~i~~~g~~~~ 266 (285)
T PRK14254 202 --ILMDEPASALDPVAT---SKIEDLIEELAE-E-YTVVIVTHN-M-QQAARISDKTAVFLTGGELVEFDDTDK 266 (285)
T ss_pred --EEEeCCCCCCCHHHH---HHHHHHHHHHhc-C-CEEEEEeCC-H-HHHHhhcCEEEEEeeCCEEEEeCCHHH
Confidence 899999999999984 456666666543 2 223344442 2 23333333 247787755444433
No 215
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.44 E-value=2.5e-13 Score=151.95 Aligned_cols=212 Identities=11% Similarity=0.147 Sum_probs=132.9
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGN 107 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~ 107 (602)
+++.+++.+..+ ..+|+++++.+ ++++|+||||||||||+++|+|+ .+++.| |++.++
T Consensus 264 ~~l~~~~l~~~~------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl------------~~p~~G~I~~~g~ 325 (510)
T PRK09700 264 TVFEVRNVTSRD------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGV------------DKRAGGEIRLNGK 325 (510)
T ss_pred cEEEEeCccccC------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CcCCCCeEEECCE
Confidence 466666544321 13799999888 89999999999999999999998 478999 999987
Q ss_pred ccCcc----ccCcceEEEeecc--ccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcc
Q 007480 108 PVEME----IDGSRTSVFYLDT--EGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGR 181 (602)
Q Consensus 108 ~~~~~----~~~~~~~vvl~Dt--eG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~ 181 (602)
++... ..+..+++++|+. .++ .+..++.|++.+.... +..
T Consensus 326 ~~~~~~~~~~~~~~i~~v~q~~~~~~~--~~~~tv~e~l~~~~~~-------~~~------------------------- 371 (510)
T PRK09700 326 DISPRSPLDAVKKGMAYITESRRDNGF--FPNFSIAQNMAISRSL-------KDG------------------------- 371 (510)
T ss_pred ECCCCCHHHHHHCCcEEccCccccCCC--cCCCcHHHHhcccccc-------ccc-------------------------
Confidence 66321 1134689999974 233 2356888887653211 000
Q ss_pred cCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcc
Q 007480 182 VKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTK 259 (602)
Q Consensus 182 ~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~ 259 (602)
.+... +.+ .......+.++++|+.++.. ..++.+.++|+|++++..++ .++. ..|.+ .
T Consensus 372 ------~~~~~-~~~------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lA---ral~-~~p~l---L 431 (510)
T PRK09700 372 ------GYKGA-MGL------FHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLIS---KWLC-CCPEV---I 431 (510)
T ss_pred ------ccccc-ccc------cChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHH---HHHh-cCCCE---E
Confidence 00000 000 00001122344455554432 23577889999999999998 4444 67877 8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCC
Q 007480 260 LCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIP 319 (602)
Q Consensus 260 L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP 319 (602)
+.|||++.||+... +.+.+.+.+..+ +...-..+++. .++..+.+++-.+++|.+-
T Consensus 432 lLDEPt~~LD~~~~---~~l~~~l~~l~~-~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 488 (510)
T PRK09700 432 IFDEPTRGIDVGAK---AEIYKVMRQLAD-DGKVILMVSSELPEIITVCDRIAVFCEGRLT 488 (510)
T ss_pred EECCCCCCcCHHHH---HHHHHHHHHHHH-CCCEEEEEcCCHHHHHhhCCEEEEEECCEEE
Confidence 99999999999995 455555655432 23334456664 3334444555566788763
No 216
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.44 E-value=1.8e-13 Score=158.58 Aligned_cols=209 Identities=17% Similarity=0.167 Sum_probs=139.3
Q ss_pred eEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---cc
Q 007480 42 KLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---ID 114 (602)
Q Consensus 42 ~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~ 114 (602)
.|.+..+...+|+++++.+ +.++|+|++|||||||++.|+|. .+|++| |.++|.++..- ..
T Consensus 470 sf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl------------~~p~~G~I~idg~~l~~~~~~~l 537 (694)
T TIGR03375 470 SFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL------------YQPTEGSVLLDGVDIRQIDPADL 537 (694)
T ss_pred EEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCceEEECCEEhhhCCHHHH
Confidence 4555444456899999988 99999999999999999999998 489999 99999887531 23
Q ss_pred CcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccc
Q 007480 115 GSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKL 194 (602)
Q Consensus 115 ~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~f 194 (602)
++.++++.||+..|. +|++||+.++- ...+++++.+....+++.+.+.. .|.
T Consensus 538 r~~i~~v~Q~~~lf~----~TI~eNi~~~~-------------~~~~~~~i~~a~~~~~l~~~i~~---------lp~-- 589 (694)
T TIGR03375 538 RRNIGYVPQDPRLFY----GTLRDNIALGA-------------PYADDEEILRAAELAGVTEFVRR---------HPD-- 589 (694)
T ss_pred HhccEEECCChhhhh----hhHHHHHhCCC-------------CCCCHHHHHHHHHHcChHHHHHh---------Ccc--
Confidence 578999999998774 58999987521 12456666666666665544321 121
Q ss_pred hhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHH
Q 007480 195 VWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVK 274 (602)
Q Consensus 195 lw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e 274 (602)
|. +.. + .+.-..+|+|++|+.+++ +++. ..|.+ .+.|||++.||++..
T Consensus 590 ----------gl------~T~---i-----~e~G~~LSgGQrQRlalA---Rall-~~p~i---liLDE~Ts~LD~~te- 637 (694)
T TIGR03375 590 ----------GL------DMQ---I-----GERGRSLSGGQRQAVALA---RALL-RDPPI---LLLDEPTSAMDNRSE- 637 (694)
T ss_pred ----------cc------cce---e-----cCCCCCCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCCCCCCHHHH-
Confidence 11 000 0 112246899999999998 6655 67777 789999999999984
Q ss_pred HHHHHHHHHhhhcCCCccceEeeccHHHHHHHHHHHHHHcCCCCCCCcchHH
Q 007480 275 RREQLKKLVASVTRPKIVQGKFLNGNEFVAFMEQILEALNKGEIPSTGSLVE 326 (602)
Q Consensus 275 ~~~~L~~~I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aINsG~vP~~~sl~e 326 (602)
..+.+.+.+..+.++ -..++++.-.--..+.+-.+++|.+-..++-.+
T Consensus 638 --~~i~~~l~~~~~~~T--~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~e 685 (694)
T TIGR03375 638 --ERFKDRLKRWLAGKT--LVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQ 685 (694)
T ss_pred --HHHHHHHHHHhCCCE--EEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHH
Confidence 455556665543333 345666432111112233347787766665443
No 217
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=5.3e-13 Score=135.81 Aligned_cols=201 Identities=17% Similarity=0.223 Sum_probs=123.0
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCC-----Ccc-eEEcCcccCcc-----ccC
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTK-----TKG-IWVWGNPVEME-----IDG 115 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~-----TkG-Iwi~~~~~~~~-----~~~ 115 (602)
..+|+++++.+ ++++|+|+||||||||++.|+|.. ++ +.| |++.+.++... ..+
T Consensus 17 ~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~ 84 (251)
T PRK14249 17 HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMN------------DIVSGARLEGAVLLDNENIYSPNLDVVNLR 84 (251)
T ss_pred eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhccc------------CccccCCcccEEEECCEEccccccChHHhh
Confidence 45899999888 899999999999999999999984 33 369 99998776321 124
Q ss_pred cceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccc-hhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccc
Q 007480 116 SRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLP-ETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKL 194 (602)
Q Consensus 116 ~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~-~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~f 194 (602)
..+++++++...+. .++.||+.+.... ++.. ....++.++.+...+++.+
T Consensus 85 ~~i~~v~q~~~~~~----~tv~enl~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~------------------ 135 (251)
T PRK14249 85 KRVGMVFQQPNPFP----KSIFDNVAFGPRM-------LGTTAQSRLDEVVEKSLRQAALWD------------------ 135 (251)
T ss_pred ceEEEEecCCccCc----CcHHHHHhhHHHh-------cCCChhhHHHHHHHHHHHHhCCch------------------
Confidence 56899999875442 3888998765422 1111 0001111221111111100
Q ss_pred hhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHH
Q 007480 195 VWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVK 274 (602)
Q Consensus 195 lw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e 274 (602)
.++..+ ++.+.++|++++++..++ .+++ ..|.+ .+.|||++.||+...+
T Consensus 136 ----------------~l~~~~--------~~~~~~LS~Gq~qrv~la---ral~-~~p~l---llLDEPt~~LD~~~~~ 184 (251)
T PRK14249 136 ----------------EVKDNL--------HKSGLALSGGQQQRLCIA---RVLA-IEPEV---ILMDEPCSALDPVSTM 184 (251)
T ss_pred ----------------hhhhHh--------hCCcccCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCCccCCHHHHH
Confidence 001111 345678899999998887 4444 67777 8899999999999954
Q ss_pred HHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 275 RREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 275 ~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
.+.+.+.+.. +...-..+++. ....-+.+.+-.+++|++-..++..+.
T Consensus 185 ---~l~~~l~~~~--~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 185 ---RIEELMQELK--QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred ---HHHHHHHHHh--cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 5555555542 22222344442 222233345556678877555544443
No 218
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.44 E-value=3.7e-13 Score=168.21 Aligned_cols=197 Identities=15% Similarity=0.138 Sum_probs=133.5
Q ss_pred cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc--ccCcceEEEe
Q 007480 49 GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME--IDGSRTSVFY 122 (602)
Q Consensus 49 al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~--~~~~~~~vvl 122 (602)
...+++++++.+ ++++|+|+|||||||||++|+|+ .+|+.| |++.|.++... ..++.+++++
T Consensus 942 ~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGL------------l~PtsG~I~i~G~dI~~~~~~~r~~IG~~p 1009 (2272)
T TIGR01257 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGL------------LPPTSGTVLVGGKDIETNLDAVRQSLGMCP 1009 (2272)
T ss_pred CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcC------------CCCCceEEEECCEECcchHHHHhhcEEEEe
Confidence 356899999988 99999999999999999999998 489999 99999877432 1245689999
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
|+...+ +..|+.|++.|.... ++......
T Consensus 1010 Q~~~L~---~~LTV~E~L~f~~~l-------kg~~~~~~----------------------------------------- 1038 (2272)
T TIGR01257 1010 QHNILF---HHLTVAEHILFYAQL-------KGRSWEEA----------------------------------------- 1038 (2272)
T ss_pred cCCcCC---CCCCHHHHHHHHHHh-------cCCCHHHH-----------------------------------------
Confidence 987544 367999998875433 21111111
Q ss_pred CCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKK 281 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~ 281 (602)
++.+++.|+.++. +..++.+.++|+|++++..++ .++ +.+|.+ .++|||+++|||.. +..+.+
T Consensus 1039 ------~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLA---rAL-i~~PkV---LLLDEPTSGLDp~s---r~~l~~ 1102 (2272)
T TIGR01257 1039 ------QLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVA---IAF-VGDAKV---VVLDEPTSGVDPYS---RRSIWD 1102 (2272)
T ss_pred ------HHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH---HHH-HcCCCE---EEEECCCcCCCHHH---HHHHHH
Confidence 1222333333332 112466788999999999988 344 467877 89999999999999 455666
Q ss_pred HHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHH
Q 007480 282 LVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVE 326 (602)
Q Consensus 282 ~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e 326 (602)
.+.+.. +...-..+|+. ..+..+.+.+-.+++|++-+.++..+
T Consensus 1103 lL~~l~--~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~ 1146 (2272)
T TIGR01257 1103 LLLKYR--SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLF 1146 (2272)
T ss_pred HHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 666552 22222344442 23334555666678898877776543
No 219
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.43 E-value=1.1e-12 Score=129.98 Aligned_cols=155 Identities=17% Similarity=0.123 Sum_probs=102.5
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeecc
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLDT 125 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~Dt 125 (602)
..+|+++++.+ ++++|+|+||||||||++.|+|. .++++| |++.+.+......+..++++.++.
T Consensus 15 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 82 (207)
T PRK13539 15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL------------LPPAAGTIKLDGGDIDDPDVAEACHYLGHRN 82 (207)
T ss_pred eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCEeCcchhhHhhcEEecCCC
Confidence 45899999988 99999999999999999999998 478999 999887643211234567777654
Q ss_pred ccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCc
Q 007480 126 EGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQG 205 (602)
Q Consensus 126 eG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g 205 (602)
..+ +..++.|++.+.... ++ ..++.+.++...+++.+
T Consensus 83 ~~~---~~~tv~~~l~~~~~~-------~~----~~~~~~~~~l~~~~l~~----------------------------- 119 (207)
T PRK13539 83 AMK---PALTVAENLEFWAAF-------LG----GEELDIAAALEAVGLAP----------------------------- 119 (207)
T ss_pred cCC---CCCcHHHHHHHHHHh-------cC----CcHHHHHHHHHHcCCHH-----------------------------
Confidence 332 246788887653211 11 01111222222222211
Q ss_pred ccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhh
Q 007480 206 KSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVAS 285 (602)
Q Consensus 206 ~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~ 285 (602)
..+..+.++|++++++..++ .++. .+|.+ .+.|||+++||+... +++.+.+.+
T Consensus 120 -----------------~~~~~~~~LS~G~~qrl~la---~al~-~~p~l---lllDEPt~~LD~~~~---~~l~~~l~~ 172 (207)
T PRK13539 120 -----------------LAHLPFGYLSAGQKRRVALA---RLLV-SNRPI---WILDEPTAALDAAAV---ALFAELIRA 172 (207)
T ss_pred -----------------HHcCChhhcCHHHHHHHHHH---HHHh-cCCCE---EEEeCCcccCCHHHH---HHHHHHHHH
Confidence 01234567888988888887 4544 56777 789999999999994 455666655
Q ss_pred h
Q 007480 286 V 286 (602)
Q Consensus 286 ~ 286 (602)
.
T Consensus 173 ~ 173 (207)
T PRK13539 173 H 173 (207)
T ss_pred H
Confidence 4
No 220
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.43 E-value=1e-12 Score=129.24 Aligned_cols=154 Identities=12% Similarity=0.099 Sum_probs=104.4
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc--ccCcceEEEee
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME--IDGSRTSVFYL 123 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~--~~~~~~~vvl~ 123 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|. .++++| |++.+.++... .....++++.+
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~------------~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q 81 (200)
T PRK13540 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL------------LNPEKGEILFERQSIKKDLCTYQKQLCFVGH 81 (200)
T ss_pred eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCeeEEECCCccccCHHHHHhheEEecc
Confidence 45899999888 99999999999999999999998 488999 99999876421 12356888887
Q ss_pred ccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccC
Q 007480 124 DTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFL 203 (602)
Q Consensus 124 DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~ 203 (602)
+...+ +..++.|++.+.... .+ ++..++++...+++.
T Consensus 82 ~~~~~---~~~tv~~~~~~~~~~-------~~-----~~~~~~~~l~~~~l~---------------------------- 118 (200)
T PRK13540 82 RSGIN---PYLTLRENCLYDIHF-------SP-----GAVGITELCRLFSLE---------------------------- 118 (200)
T ss_pred ccccC---cCCCHHHHHHHHHhc-------Cc-----chHHHHHHHHHcCCc----------------------------
Confidence 75432 356888887764311 00 011111111111110
Q ss_pred CcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHH
Q 007480 204 QGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLV 283 (602)
Q Consensus 204 ~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I 283 (602)
...++.+.++++++++...++ ++++ .+|.+ .+.|||+++||+... +.+.+.+
T Consensus 119 ------------------~~~~~~~~~LS~G~~~rv~la---ral~-~~p~~---lilDEP~~~LD~~~~---~~l~~~l 170 (200)
T PRK13540 119 ------------------HLIDYPCGLLSSGQKRQVALL---RLWM-SKAKL---WLLDEPLVALDELSL---LTIITKI 170 (200)
T ss_pred ------------------hhhhCChhhcCHHHHHHHHHH---HHHh-cCCCE---EEEeCCCcccCHHHH---HHHHHHH
Confidence 001234567888988888887 4554 56776 789999999999994 5666666
Q ss_pred hhh
Q 007480 284 ASV 286 (602)
Q Consensus 284 ~~~ 286 (602)
.+.
T Consensus 171 ~~~ 173 (200)
T PRK13540 171 QEH 173 (200)
T ss_pred HHH
Confidence 654
No 221
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.43 E-value=3.7e-13 Score=150.95 Aligned_cols=218 Identities=15% Similarity=0.205 Sum_probs=131.4
Q ss_pred cEEeeCCCcceEEe-ccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEc-
Q 007480 32 PIVEPDPGHTKLRL-SREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVW- 105 (602)
Q Consensus 32 plv~~d~~~~~l~~-~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~- 105 (602)
+++.+++.+.++.- +.....+|+++++.+ ++++|+||||||||||+++|+|+ .++++| |.+.
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl------------~~p~~G~i~~~~ 345 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGV------------LEPTSGEVNVRV 345 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCeEEEEec
Confidence 46777765443311 112245899999988 89999999999999999999998 478999 8885
Q ss_pred Cccc---Ccc------ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhh
Q 007480 106 GNPV---EME------IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAE 176 (602)
Q Consensus 106 ~~~~---~~~------~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~ 176 (602)
+.+. ... ..+..+++++|+...+ +..++.|++.+.+.. +......++.+.++...+++.+
T Consensus 346 g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~---~~~tv~e~l~~~~~~--------~~~~~~~~~~~~~~l~~~~l~~ 414 (520)
T TIGR03269 346 GDEWVDMTKPGPDGRGRAKRYIGILHQEYDLY---PHRTVLDNLTEAIGL--------ELPDELARMKAVITLKMVGFDE 414 (520)
T ss_pred CCccccccccchhhHHHHhhhEEEEccCcccC---CCCcHHHHHHHHHHc--------CCCHHHHHHHHHHHHHhCCCCC
Confidence 5321 110 1134589999986433 356889988764321 1111111111222222111100
Q ss_pred hhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccch
Q 007480 177 EFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLL 256 (602)
Q Consensus 177 ~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~ 256 (602)
. ... . ..++.+.++|++++++..++ .++ +..|.+
T Consensus 415 ~-----------------------------~~~----~--------~~~~~~~~LSgGq~qrv~la---ral-~~~p~l- 448 (520)
T TIGR03269 415 E-----------------------------KAE----E--------ILDKYPDELSEGERHRVALA---QVL-IKEPRI- 448 (520)
T ss_pred c-----------------------------cch----h--------hhhCChhhCCHHHHHHHHHH---HHH-hcCCCE-
Confidence 0 000 0 01356788999999999998 444 467877
Q ss_pred hcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcc
Q 007480 257 RTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGS 323 (602)
Q Consensus 257 ~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~s 323 (602)
.+.|||++.||+... ..+.+.|.+..+.....-..+|+. .++.-+.+++-.+++|.+-..++
T Consensus 449 --LllDEPt~~LD~~~~---~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~ 511 (520)
T TIGR03269 449 --VILDEPTGTMDPITK---VDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511 (520)
T ss_pred --EEEeCCcccCCHHHH---HHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 899999999999994 556666655543223333456653 23333444555567787644343
No 222
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.43 E-value=9.9e-13 Score=136.14 Aligned_cols=218 Identities=17% Similarity=0.230 Sum_probs=130.7
Q ss_pred cccEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccC----CCcc-
Q 007480 30 AFPIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDT----KTKG- 101 (602)
Q Consensus 30 ~iplv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~----~TkG- 101 (602)
+-|++.+++.+.++ . ...+|+++++.+ ++++|+|+||+|||||+++|+|.. .+ ++.|
T Consensus 18 ~~~~l~i~nl~~~~--~--~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~-----------~p~~~~~~~G~ 82 (276)
T PRK14271 18 AAPAMAAVNLTLGF--A--GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMN-----------DKVSGYRYSGD 82 (276)
T ss_pred cCcEEEEeeEEEEE--C--CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccC-----------CcCCCCCCceE
Confidence 34577777654333 3 346899999988 999999999999999999999984 12 4689
Q ss_pred eEEcCcccCcc----ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhccc-chhhhHHHHHHHHHHHhhhh
Q 007480 102 IWVWGNPVEME----IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNL-PETIREADISRLSFAVELAE 176 (602)
Q Consensus 102 Iwi~~~~~~~~----~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~-~~~i~e~~l~~L~~~~~L~~ 176 (602)
|++.+.++... .....++++++++..+ + .++.+|+.++... ... ........+.++...+++.+
T Consensus 83 i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~---~-~tv~eni~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~ 151 (276)
T PRK14271 83 VLLGGRSIFNYRDVLEFRRRVGMLFQRPNPF---P-MSIMDNVLAGVRA-------HKLVPRKEFRGVAQARLTEVGLWD 151 (276)
T ss_pred EEECCEEccccchhHHHhhheEEeccCCccC---C-ccHHHHHHHHHHh-------ccCCCHHHHHHHHHHHHHHcCCCc
Confidence 99998776421 1245689999886433 2 5888888765321 100 00000000111111111100
Q ss_pred hhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccch
Q 007480 177 EFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLL 256 (602)
Q Consensus 177 ~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~ 256 (602)
.+...+ ++.+.++|++++++..++ .+++ ..|.+
T Consensus 152 ----------------------------------~~~~~l--------~~~~~~LSgGq~qrl~LA---ral~-~~p~l- 184 (276)
T PRK14271 152 ----------------------------------AVKDRL--------SDSPFRLSGGQQQLLCLA---RTLA-VNPEV- 184 (276)
T ss_pred ----------------------------------hhhhHh--------hCCcccCCHHHHHHHHHH---HHHh-cCCCE-
Confidence 000001 245678899999998888 5554 56776
Q ss_pred hcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 257 RTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 257 ~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
.+.|||++.||+... ..+.+.+.+..+ ...-..+++.. ...-+.+.+-.|++|.+-..++..+.
T Consensus 185 --llLDEPt~~LD~~~~---~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~ 249 (276)
T PRK14271 185 --LLLDEPTSALDPTTT---EKIEEFIRSLAD--RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249 (276)
T ss_pred --EEEcCCcccCCHHHH---HHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 789999999999984 455666655533 22233444422 22223345556688877555554443
No 223
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.43 E-value=1.6e-13 Score=159.21 Aligned_cols=208 Identities=19% Similarity=0.180 Sum_probs=139.5
Q ss_pred eEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc---ccc
Q 007480 42 KLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM---EID 114 (602)
Q Consensus 42 ~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~---~~~ 114 (602)
.|.+.+....+|+++++.+ +.|+|+|++|||||||++.|+|. .+|++| |.++|.++.. ...
T Consensus 484 sf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl------------~~p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 484 TFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL------------YQPWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred EEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCcEEEECCEeHHHCCHHHH
Confidence 4555444456899999988 99999999999999999999998 489999 9999988753 123
Q ss_pred CcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccc
Q 007480 115 GSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKL 194 (602)
Q Consensus 115 ~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~f 194 (602)
++.++++.||+.-|. +|++||+.++ ....+++++.+....+++.+.+.. .|
T Consensus 552 r~~i~~v~Q~~~lf~----gTi~eNi~l~-------------~~~~~~~~i~~al~~~~l~~~i~~---------lp--- 602 (710)
T TIGR03796 552 ANSVAMVDQDIFLFE----GTVRDNLTLW-------------DPTIPDADLVRACKDAAIHDVITS---------RP--- 602 (710)
T ss_pred HhheeEEecCChhhh----ccHHHHhhCC-------------CCCCCHHHHHHHHHHhCCHHHHHh---------Cc---
Confidence 678999999998774 5899998642 123456666666666666544321 12
Q ss_pred hhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHH
Q 007480 195 VWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVK 274 (602)
Q Consensus 195 lw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e 274 (602)
+|. +.. ++ +.-..+|+|++|+.+++ +++. ..|.+ .+.|||++.||++..+
T Consensus 603 ---------~gl------~t~---i~-----e~G~~LSGGQrQRiaLA---Rall-~~p~i---liLDEptS~LD~~te~ 652 (710)
T TIGR03796 603 ---------GGY------DAE---LA-----EGGANLSGGQRQRLEIA---RALV-RNPSI---LILDEATSALDPETEK 652 (710)
T ss_pred ---------Ccc------cce---ec-----cCCCCCCHHHHHHHHHH---HHHh-hCCCE---EEEECccccCCHHHHH
Confidence 111 000 00 11246899999999998 6765 67777 7899999999999843
Q ss_pred HHHHHHHHHhhhcCCCccceEeeccHHHHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 275 RREQLKKLVASVTRPKIVQGKFLNGNEFVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 275 ~~~~L~~~I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
++.+.+.+ ..+ +-..++++.-.--..+.+-.+++|.+-..++-.+.
T Consensus 653 ---~i~~~l~~--~~~--T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~L 698 (710)
T TIGR03796 653 ---IIDDNLRR--RGC--TCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEEL 698 (710)
T ss_pred ---HHHHHHHh--cCC--EEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHH
Confidence 45555543 122 33566765321111233344577887666664443
No 224
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=4.2e-13 Score=150.05 Aligned_cols=218 Identities=13% Similarity=0.149 Sum_probs=135.4
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccC-CCcc-eEEcC
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDT-KTKG-IWVWG 106 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~-~TkG-Iwi~~ 106 (602)
+++.+++.+..+.-+ +...+|+++++.+ ++++|+|+||||||||+++|+|+. + +++| |++.+
T Consensus 258 ~~l~~~~l~~~~~~~-~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~------------~~~~~G~i~~~g 324 (506)
T PRK13549 258 VILEVRNLTAWDPVN-PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAY------------PGRWEGEIFIDG 324 (506)
T ss_pred ceEEEecCccccccc-cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCC------------CCCCCcEEEECC
Confidence 356666654433111 2345899999988 899999999999999999999983 5 5899 99988
Q ss_pred cccCccc----cCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhccc
Q 007480 107 NPVEMEI----DGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRV 182 (602)
Q Consensus 107 ~~~~~~~----~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~ 182 (602)
.++.... .+..+++++|+.......+..++.|++.+..... .++. +..
T Consensus 325 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~-----~~~~-~~~---------------------- 376 (506)
T PRK13549 325 KPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDR-----FTGG-SRI---------------------- 376 (506)
T ss_pred EECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhh-----hccC-ccc----------------------
Confidence 7654211 1345899999863111123568888876543110 0000 000
Q ss_pred CCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhccc
Q 007480 183 KGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKL 260 (602)
Q Consensus 183 ~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L 260 (602)
+.....+.++++|+.++.. ..++.+.++|++++++..++ .++ +..|.+ .+
T Consensus 377 ---------------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA---~al-~~~p~l---ll 428 (506)
T PRK13549 377 ---------------------DDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLA---KCL-LLNPKI---LI 428 (506)
T ss_pred ---------------------ChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHH---HHH-hhCCCE---EE
Confidence 0001122334445544431 23567889999999999998 444 467887 89
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCc
Q 007480 261 CDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTG 322 (602)
Q Consensus 261 ~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~ 322 (602)
.|||+++||+...+ .+.+++.++.+ +...-..+|+. ..+.-+.+++-.+++|.+-..+
T Consensus 429 LDEPt~~LD~~~~~---~l~~~l~~l~~-~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 429 LDEPTRGIDVGAKY---EIYKLINQLVQ-QGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDL 487 (506)
T ss_pred EcCCCCCcCHhHHH---HHHHHHHHHHH-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEe
Confidence 99999999999954 55555555432 23333456663 2333444556667888774433
No 225
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=7.5e-13 Score=133.56 Aligned_cols=193 Identities=14% Similarity=0.165 Sum_probs=119.5
Q ss_pred ccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-ccCcceEEEeeccc
Q 007480 52 TIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-IDGSRTSVFYLDTE 126 (602)
Q Consensus 52 iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-~~~~~~~vvl~Dte 126 (602)
+|+++++.+ ++++|+|+||+|||||+++|+|. .+++.| |.+.|.++... .....+++++++..
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~------------~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~ 81 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGF------------IKPDSGKILLNGKDITNLPPEKRDISYVPQNYA 81 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------cCCCceEEEECCEEcCcCChhHcCEEEEeecCc
Confidence 699999888 89999999999999999999998 488999 99999776431 12357899998864
Q ss_pred cccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCcc
Q 007480 127 GFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGK 206 (602)
Q Consensus 127 G~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~ 206 (602)
-+ +..++.|++.++... +.......
T Consensus 82 ~~---~~~t~~e~l~~~~~~-------~~~~~~~~--------------------------------------------- 106 (235)
T cd03299 82 LF---PHMTVYKNIAYGLKK-------RKVDKKEI--------------------------------------------- 106 (235)
T ss_pred cC---CCccHHHHHHHHHHH-------cCCCHHHH---------------------------------------------
Confidence 33 356888887765322 11100000
Q ss_pred cHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhh
Q 007480 207 SVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVAS 285 (602)
Q Consensus 207 t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~ 285 (602)
.+.+.++++.++. ...++.+.++++++++...++ .+ ++.+|.+ .+.|+|+++||+...+ .+.+.+.+
T Consensus 107 --~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la---ra-l~~~p~l---lllDEPt~gLD~~~~~---~l~~~l~~ 174 (235)
T cd03299 107 --ERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIA---RA-LVVNPKI---LLLDEPFSALDVRTKE---KLREELKK 174 (235)
T ss_pred --HHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHH---HH-HHcCCCE---EEECCCcccCCHHHHH---HHHHHHHH
Confidence 1111122222221 111344567888998888887 33 3467777 7899999999999954 55555555
Q ss_pred hcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcc
Q 007480 286 VTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGS 323 (602)
Q Consensus 286 ~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~s 323 (602)
....+...-..+++.. ...-+.+.+-.+..|.+-..++
T Consensus 175 ~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 213 (235)
T cd03299 175 IRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGK 213 (235)
T ss_pred HHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecC
Confidence 4322222223444422 2222334444557777644433
No 226
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.43 E-value=6.1e-13 Score=137.03 Aligned_cols=200 Identities=17% Similarity=0.207 Sum_probs=124.5
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc------ccCcceE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME------IDGSRTS 119 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~------~~~~~~~ 119 (602)
..+++++++.+ ++++|+|+||||||||+++|+|. .+++.| |++.+.++... .....++
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~ 92 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL------------ESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQ 92 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEECCEeccccChhHHHHHHhcEE
Confidence 45899999988 89999999999999999999998 478999 99999865421 1235689
Q ss_pred EEeeccc-cccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhh
Q 007480 120 VFYLDTE-GFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLI 198 (602)
Q Consensus 120 vvl~Dte-G~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~v 198 (602)
+++++.. .+. +..++.|++.+.+..+ ++.....
T Consensus 93 ~v~q~~~~~~~--~~~t~~~~l~~~~~~~------~~~~~~~-------------------------------------- 126 (268)
T PRK10419 93 MVFQDSISAVN--PRKTVREIIREPLRHL------LSLDKAE-------------------------------------- 126 (268)
T ss_pred EEEcChhhccC--CCCCHHHHHHHHHHhh------ccCCHHH--------------------------------------
Confidence 9999863 332 2456777765533210 0100000
Q ss_pred hhccCCcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHH
Q 007480 199 QRDFLQGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRR 276 (602)
Q Consensus 199 vRDf~~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~ 276 (602)
..+.+++.+...+.. ..++.+..+|++++++..++ .+++ .+|.+ .+.|||+++||+...
T Consensus 127 ---------~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~la---ral~-~~p~l---llLDEPt~~LD~~~~--- 187 (268)
T PRK10419 127 ---------RLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLA---RALA-VEPKL---LILDEAVSNLDLVLQ--- 187 (268)
T ss_pred ---------HHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHH---HHHh-cCCCE---EEEeCCCcccCHHHH---
Confidence 111122223222211 11345677899999988887 4444 67877 899999999999984
Q ss_pred HHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHH
Q 007480 277 EQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVE 326 (602)
Q Consensus 277 ~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e 326 (602)
..+.+.+.+..+.....-..+++. .+..-+.+.+-.|++|.+-..++..+
T Consensus 188 ~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~ 238 (268)
T PRK10419 188 AGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGD 238 (268)
T ss_pred HHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhh
Confidence 455555555432222223445543 22222345555667887755555444
No 227
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.43 E-value=1.2e-12 Score=131.21 Aligned_cols=203 Identities=16% Similarity=0.144 Sum_probs=137.6
Q ss_pred cccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEe
Q 007480 47 REGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFY 122 (602)
Q Consensus 47 ~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl 122 (602)
.....+|+||++.+ +.+||+|+|||||||||++|+|. .+||+| +.+.|+... ++
T Consensus 37 ~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi------------~~Pt~G~v~v~G~v~~----------li 94 (249)
T COG1134 37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGI------------YKPTSGKVKVTGKVAP----------LI 94 (249)
T ss_pred cceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCc------------cCCCCceEEEcceEeh----------hh
Confidence 34456899999999 99999999999999999999998 599999 888775332 22
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
-=..||. +..|.+||+.+-... ++......++..++...+.+|.+.+.
T Consensus 95 ~lg~Gf~--pelTGreNi~l~~~~-------~G~~~~ei~~~~~eIieFaELG~fi~----------------------- 142 (249)
T COG1134 95 ELGAGFD--PELTGRENIYLRGLI-------LGLTRKEIDEKVDEIIEFAELGDFID----------------------- 142 (249)
T ss_pred hcccCCC--cccchHHHHHHHHHH-------hCccHHHHHHHHHHHHHHHHHHHHhh-----------------------
Confidence 2134454 478999999986655 67777777777777777777765442
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~ 282 (602)
.++..+|.+...+.+|. +.+-..|.+ .+.||-.+--|+.|.+.. .+.
T Consensus 143 -----------------------~PvktYSSGM~aRLaFs----ia~~~~pdI---LllDEvlavGD~~F~~K~---~~r 189 (249)
T COG1134 143 -----------------------QPVKTYSSGMYARLAFS----VATHVEPDI---LLLDEVLAVGDAAFQEKC---LER 189 (249)
T ss_pred -----------------------CchhhccHHHHHHHHHh----hhhhcCCCE---EEEehhhhcCCHHHHHHH---HHH
Confidence 23344455555555655 555567887 788988889999996543 333
Q ss_pred HhhhcCCCccceEeecc-HHHHHHHHHHHHHHcCCCCCCCcchHHHHhHHHHHHHHHHHHHHHhh
Q 007480 283 VASVTRPKIVQGKFLNG-NEFVAFMEQILEALNKGEIPSTGSLVEVFNKGILERCLKLYNERMAK 346 (602)
Q Consensus 283 I~~~~~pK~l~g~~ltG-~~l~~lv~~yv~aINsG~vP~~~sl~e~~n~~av~~a~~~Y~~~M~~ 346 (602)
+.+..+ |...-..+++ .....-+++++-.++.|++-..+++ +++++.|++.+..
T Consensus 190 l~e~~~-~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~---------~~vi~~Y~~~~~~ 244 (249)
T COG1134 190 LNELVE-KNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSP---------EEVIPAYEEDLAD 244 (249)
T ss_pred HHHHHH-cCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCH---------HHHHHHHHHhhhh
Confidence 444422 2222244555 3344445555555689998777765 4456777777653
No 228
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.43 E-value=7.8e-13 Score=134.43 Aligned_cols=202 Identities=16% Similarity=0.258 Sum_probs=121.9
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCC-----Ccc-eEEcCcccCcc-----ccC
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTK-----TKG-IWVWGNPVEME-----IDG 115 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~-----TkG-Iwi~~~~~~~~-----~~~ 115 (602)
..+|+++++.+ ++++|+|+||+|||||+++|+|.. ++ ++| |++.+.++... ..+
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMH------------DLTPGARVTGRILLDGQDIYGPRVDPVAMR 84 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC------------CCCcCCCCceeEEECCEEcccCccCHHHhh
Confidence 46899999888 899999999999999999999983 33 379 99999776421 123
Q ss_pred cceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchh-hhHHHHHHHHHHHhhhhhhhcccCCcccccCcccc
Q 007480 116 SRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPET-IREADISRLSFAVELAEEFYGRVKGQDVAFEPAKL 194 (602)
Q Consensus 116 ~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~-i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~f 194 (602)
..++++++++.-+ +..++.||+.++... ...... ...+.+..+...+++
T Consensus 85 ~~i~~~~q~~~~~---~~~t~~enl~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l-------------------- 134 (252)
T PRK14272 85 RRVGMVFQKPNPF---PTMSVFDNVVAGLKL-------AGIRDRDHLMEVAERSLRGAAL-------------------- 134 (252)
T ss_pred ceeEEEeccCccC---cCCCHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHHcCc--------------------
Confidence 4688999986433 346888888664321 111000 000001111000000
Q ss_pred hhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHH
Q 007480 195 VWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVK 274 (602)
Q Consensus 195 lw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e 274 (602)
| .+ +...+ ++.+.++|+++++...++ .+++ ..|.+ .+.|||+++||+...
T Consensus 135 -~-------~~------l~~~~--------~~~~~~LS~G~~qrv~la---ral~-~~p~l---lllDEP~~~LD~~~~- 184 (252)
T PRK14272 135 -W-------DE------VKDRL--------KTPATGLSGGQQQRLCIA---RALA-VEPEI---LLMDEPTSALDPAST- 184 (252)
T ss_pred -c-------hh------hhhhh--------cCCcccCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCCccCCHHHH-
Confidence 0 00 00111 345678999999998888 4444 67777 789999999999984
Q ss_pred HHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 275 RREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 275 ~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
..+.+.+.+..+ ...-..+++. ....-+.+.+-.|++|.+-..++..+.
T Consensus 185 --~~l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 185 --ARIEDLMTDLKK--VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred --HHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 455566655432 2222344442 222223344556688887665555444
No 229
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.42 E-value=1.9e-12 Score=129.34 Aligned_cols=158 Identities=16% Similarity=0.150 Sum_probs=102.9
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEc--Cc--ccCccc-------c
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVW--GN--PVEMEI-------D 114 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~--~~--~~~~~~-------~ 114 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|. .+++.| |++. +. ++.... .
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~------------~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~ 88 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYAN------------YLPDSGRILVRHEGAWVDLAQASPREVLEVR 88 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCCeEEEecCCCccchhhcCHHHHHHHH
Confidence 45899999988 89999999999999999999998 478899 8886 32 221100 1
Q ss_pred CcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccc
Q 007480 115 GSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKL 194 (602)
Q Consensus 115 ~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~f 194 (602)
...+++++++..-+ +..++.|++.+.+.. ++......
T Consensus 89 ~~~i~~~~q~~~~~---~~~tv~e~l~~~~~~-------~~~~~~~~--------------------------------- 125 (224)
T TIGR02324 89 RKTIGYVSQFLRVI---PRVSALEVVAEPLLE-------RGVPREAA--------------------------------- 125 (224)
T ss_pred hcceEEEecccccC---CCccHHHHHHHHHHH-------cCCCHHHH---------------------------------
Confidence 24689999886433 356788887764321 11100000
Q ss_pred hhhhhhccCCcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHH
Q 007480 195 VWLIQRDFLQGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIY 272 (602)
Q Consensus 195 lw~vvRDf~~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F 272 (602)
.+.+.++++.++.. ..++.+.++|+++++...++ .+++ ..|.+ .+.|||++.||+..
T Consensus 126 --------------~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la---ral~-~~p~l---lllDEPt~~LD~~~ 184 (224)
T TIGR02324 126 --------------RARARELLARLNIPERLWHLPPATFSGGEQQRVNIA---RGFI-ADYPI---LLLDEPTASLDAAN 184 (224)
T ss_pred --------------HHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHH---HHHh-cCCCE---EEEcCCcccCCHHH
Confidence 11112222222211 01345678899999988887 4444 67777 78999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 007480 273 VKRREQLKKLVASV 286 (602)
Q Consensus 273 ~e~~~~L~~~I~~~ 286 (602)
.+ .+.+.+.+.
T Consensus 185 ~~---~l~~~l~~~ 195 (224)
T TIGR02324 185 RQ---VVVELIAEA 195 (224)
T ss_pred HH---HHHHHHHHH
Confidence 54 555555554
No 230
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.42 E-value=5.5e-13 Score=137.60 Aligned_cols=204 Identities=18% Similarity=0.172 Sum_probs=120.6
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeecc
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLDT 125 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~Dt 125 (602)
..+|+++++.+ ++++|+||||||||||+++|+|. .++++| |.+.|.++........+++++++.
T Consensus 20 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~ 87 (272)
T PRK15056 20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGF------------VRLASGKISILGQPTRQALQKNLVAYVPQSE 87 (272)
T ss_pred cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEEhHHhhccceEEEecccc
Confidence 45899999888 89999999999999999999998 478999 999998764221123588888876
Q ss_pred ccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCc
Q 007480 126 EGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQG 205 (602)
Q Consensus 126 eG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g 205 (602)
...... ..++.+++.++... +. + + .+. ..
T Consensus 88 ~~~~~~-~~~~~~~i~~~~~~--------~~-~-------------------------------------~---~~~-~~ 116 (272)
T PRK15056 88 EVDWSF-PVLVEDVVMMGRYG--------HM-G-------------------------------------W---LRR-AK 116 (272)
T ss_pred ccccCC-Ccchhhheeccccc--------cc-c-------------------------------------c---ccC-CC
Confidence 431111 12334443221100 00 0 0 000 00
Q ss_pred ccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHh
Q 007480 206 KSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVA 284 (602)
Q Consensus 206 ~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~ 284 (602)
....+..+.+++..+. ...++.+.++|++++++..++ .+++ ..|.+ .+.|||+++||+...+ .+.+.+.
T Consensus 117 ~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~la---raL~-~~p~l---lllDEPt~~LD~~~~~---~l~~~L~ 186 (272)
T PRK15056 117 KRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLA---RAIA-QQGQV---ILLDEPFTGVDVKTEA---RIISLLR 186 (272)
T ss_pred HHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCCccCCHHHHH---HHHHHHH
Confidence 0112223334444332 112456778999999999888 5554 56777 7899999999999954 5556665
Q ss_pred hhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 285 SVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 285 ~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
+..+ +...-..+++.. ...-+.+.+- +-+|.+-..++..+..
T Consensus 187 ~~~~-~g~tviivsH~~~~~~~~~d~v~-~~~G~i~~~g~~~~~~ 229 (272)
T PRK15056 187 ELRD-EGKTMLVSTHNLGSVTEFCDYTV-MVKGTVLASGPTETTF 229 (272)
T ss_pred HHHh-CCCEEEEEeCCHHHHHHhCCEEE-EECCEEEeecCHHhcc
Confidence 5432 222334555532 2223333442 2367765555554443
No 231
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.42 E-value=3.5e-13 Score=152.43 Aligned_cols=207 Identities=15% Similarity=0.179 Sum_probs=138.9
Q ss_pred EEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc---cccC
Q 007480 43 LRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM---EIDG 115 (602)
Q Consensus 43 l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~---~~~~ 115 (602)
|.+.+....+|+++++.+ +.++|+|++|||||||++.|+|. .++++| |.+.+.++.. ...+
T Consensus 338 f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl------------~~~~~G~I~i~g~~i~~~~~~~~~ 405 (571)
T TIGR02203 338 FRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRF------------YEPDSGQILLDGHDLADYTLASLR 405 (571)
T ss_pred EEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhc------------cCCCCCeEEECCEeHHhcCHHHHH
Confidence 444333346899999888 99999999999999999999998 488999 9999987653 1235
Q ss_pred cceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccch
Q 007480 116 SRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLV 195 (602)
Q Consensus 116 ~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~fl 195 (602)
..++++.||+.-+. +|++||+.++ + .+..+++++.+....+++.+.+.. .|
T Consensus 406 ~~i~~v~Q~~~lf~----~Ti~~Ni~~~-----------~-~~~~~~~~i~~~l~~~~l~~~i~~---------lp---- 456 (571)
T TIGR02203 406 RQVALVSQDVVLFN----DTIANNIAYG-----------R-TEQADRAEIERALAAAYAQDFVDK---------LP---- 456 (571)
T ss_pred hhceEEccCccccc----ccHHHHHhcC-----------C-CCCCCHHHHHHHHHHcChHHHHHh---------Cc----
Confidence 67999999987764 5889998752 1 124556777777777666554421 11
Q ss_pred hhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHH
Q 007480 196 WLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKR 275 (602)
Q Consensus 196 w~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~ 275 (602)
+|. +.. ++ +.-..+|+|++|+..++ +++. ..|.+ .+.|||+++||++..
T Consensus 457 --------~gl------dt~---i~-----~~g~~LSgGqrQRiaLA---Rall-~~~~i---llLDEpts~LD~~~~-- 505 (571)
T TIGR02203 457 --------LGL------DTP---IG-----ENGVLLSGGQRQRLAIA---RALL-KDAPI---LILDEATSALDNESE-- 505 (571)
T ss_pred --------Ccc------cce---ec-----CCCCcCCHHHHHHHHHH---HHHh-cCCCE---EEEeCccccCCHHHH--
Confidence 111 000 00 11246899999999998 6776 45555 689999999999994
Q ss_pred HHHHHHHHhhhcCCCccceEeeccHHHHHHHHHHHHH---HcCCCCCCCcchHHH
Q 007480 276 REQLKKLVASVTRPKIVQGKFLNGNEFVAFMEQILEA---LNKGEIPSTGSLVEV 327 (602)
Q Consensus 276 ~~~L~~~I~~~~~pK~l~g~~ltG~~l~~lv~~yv~a---INsG~vP~~~sl~e~ 327 (602)
+.+.+.+.+..+.+ .-..+|+..- .+ .+.+. +++|.+-..++-.+.
T Consensus 506 -~~i~~~L~~~~~~~--tiIiitH~~~--~~-~~~D~ii~l~~g~i~~~g~~~~l 554 (571)
T TIGR02203 506 -RLVQAALERLMQGR--TTLVIAHRLS--TI-EKADRIVVMDDGRIVERGTHNEL 554 (571)
T ss_pred -HHHHHHHHHHhCCC--EEEEEehhhH--HH-HhCCEEEEEeCCEEEeeCCHHHH
Confidence 45666666654333 3456777542 22 22333 467777665654443
No 232
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=5.4e-13 Score=135.47 Aligned_cols=205 Identities=17% Similarity=0.220 Sum_probs=122.4
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc----cccCcceEEE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM----EIDGSRTSVF 121 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~----~~~~~~~~vv 121 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|... +...+++.| |++.+.++.. ...+..++++
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-------~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~ 88 (249)
T PRK14253 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMND-------LIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMV 88 (249)
T ss_pred eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcc-------cccCCCCceEEEECCEEcccccchHHHHhheeEE
Confidence 45899999988 8999999999999999999999830 000013689 9998876531 1123568999
Q ss_pred eeccccccccCCCCchhHHHHHHHhhhhhhhhcccc-hhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhh
Q 007480 122 YLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLP-ETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQR 200 (602)
Q Consensus 122 l~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~-~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvR 200 (602)
+++...+ + .++.||+.++... +... ....++.+..+...+++.+
T Consensus 89 ~q~~~~~---~-~tv~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~------------------------ 133 (249)
T PRK14253 89 FQKPNPF---P-MSIYENVAYGLRA-------QGIKDKKVLDEVVERSLRGAALWD------------------------ 133 (249)
T ss_pred ecCCCcC---c-ccHHHHHHhHHHh-------cCCCchHHHHHHHHHHHHHcCCch------------------------
Confidence 9886533 2 4888888765321 1100 0000111111111111100
Q ss_pred ccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHH
Q 007480 201 DFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLK 280 (602)
Q Consensus 201 Df~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~ 280 (602)
.+...+ ++.+.++|+++++...++ .+++ .+|.+ .+.|||+++||+... ..+.
T Consensus 134 ----------~~~~~~--------~~~~~~LS~G~~qrv~la---ral~-~~p~l---lllDEP~~~LD~~~~---~~l~ 185 (249)
T PRK14253 134 ----------EVKDRL--------KSHAFGLSGGQQQRLCIA---RTIA-MEPDV---ILMDEPTSALDPIAT---HKIE 185 (249)
T ss_pred ----------hhhHHh--------hcCcccCCHHHHHHHHHH---HHHH-cCCCE---EEEeCCCccCCHHHH---HHHH
Confidence 000011 244567899999988887 4443 67777 889999999999994 4566
Q ss_pred HHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHH
Q 007480 281 KLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVE 326 (602)
Q Consensus 281 ~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e 326 (602)
+.+.+..+ ...-..+++.. ...-+.+.+-.+++|.+-..++..+
T Consensus 186 ~~l~~~~~--~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (249)
T PRK14253 186 ELMEELKK--NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQV 230 (249)
T ss_pred HHHHHHhc--CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 66666543 22234444432 2233345555668888765555433
No 233
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.42 E-value=5.8e-13 Score=148.64 Aligned_cols=196 Identities=13% Similarity=0.152 Sum_probs=126.0
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCC--Ccc-eEEcCcccCccc----cCcceE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTK--TKG-IWVWGNPVEMEI----DGSRTS 119 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~--TkG-Iwi~~~~~~~~~----~~~~~~ 119 (602)
..+|+++++.+ ++++|+||||||||||+++|+|.. ++ ++| |.+.+.++.... .+..++
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~------------~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY------------PHGTWDGEIYWSGSPLKASNIRDTERAGIV 81 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCCCeEEEECCEECCCCCHHHHHhCCEE
Confidence 45899999988 899999999999999999999983 44 789 999887764311 134689
Q ss_pred EEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhh
Q 007480 120 VFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQ 199 (602)
Q Consensus 120 vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vv 199 (602)
+++|+...+ +..++.|++.++... +...+...
T Consensus 82 ~v~q~~~~~---~~~tv~~~l~~~~~~-------~~~~~~~~-------------------------------------- 113 (500)
T TIGR02633 82 IIHQELTLV---PELSVAENIFLGNEI-------TLPGGRMA-------------------------------------- 113 (500)
T ss_pred EEeeccccC---CCCcHHHHHHhhccc-------cccccccC--------------------------------------
Confidence 999987533 356888887764311 00000000
Q ss_pred hccCCcccHHHHHHHHHHhCCCCC--CCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHH
Q 007480 200 RDFLQGKSVQEMVHDALQRVPNDK--GDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRRE 277 (602)
Q Consensus 200 RDf~~g~t~~eyLe~aL~~~~~~~--~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~ 277 (602)
.....+.++++|+..+... .++.+.++|++++++..++ .++. .+|.+ .+.|||+++||+... .
T Consensus 114 -----~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA---~al~-~~p~l---llLDEPt~~LD~~~~---~ 178 (500)
T TIGR02633 114 -----YNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIA---KALN-KQARL---LILDEPSSSLTEKET---E 178 (500)
T ss_pred -----HHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHH---HHHh-hCCCE---EEEeCCCCCCCHHHH---H
Confidence 0011223344444444321 1345788999999999998 4444 67887 899999999999995 4
Q ss_pred HHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCC
Q 007480 278 QLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPST 321 (602)
Q Consensus 278 ~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~ 321 (602)
.+.+.+.+..+ +...-..+|+. .+...+.+.+-.+++|.+-..
T Consensus 179 ~l~~~l~~l~~-~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 179 ILLDIIRDLKA-HGVACVYISHKLNEVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred HHHHHHHHHHh-CCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeee
Confidence 55555555432 22233455553 333334455556678876443
No 234
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.42 E-value=7.7e-13 Score=128.38 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=50.6
Q ss_pred ccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc----cCcceEEEee
Q 007480 52 TIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI----DGSRTSVFYL 123 (602)
Q Consensus 52 iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~----~~~~~~vvl~ 123 (602)
+|+++++.+ ++++|+|+||||||||+++|+|. .+++.| |++.+.++.... .+..++++++
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q 82 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGL------------RPPASGEITLDGKPVTRRSPRDAIRAGIAYVPE 82 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCEECCccCHHHHHhCCeEEecC
Confidence 789999888 89999999999999999999998 488999 999987664211 1345777777
Q ss_pred cc
Q 007480 124 DT 125 (602)
Q Consensus 124 Dt 125 (602)
+.
T Consensus 83 ~~ 84 (182)
T cd03215 83 DR 84 (182)
T ss_pred Cc
Confidence 64
No 235
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.42 E-value=3.1e-13 Score=143.18 Aligned_cols=185 Identities=19% Similarity=0.265 Sum_probs=120.6
Q ss_pred EECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-ccCcceEEEeeccccccccCCCCchhHHHH
Q 007480 65 VIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-IDGSRTSVFYLDTEGFESIGKSNVYDDRIF 142 (602)
Q Consensus 65 IvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-~~~~~~~vvl~DteG~~~~~~~tv~d~~if 142 (602)
|+|||||||||||++|+|+ .++++| |++.|.++... .....+++++|+...+ +..++.||+.|
T Consensus 1 l~G~nGsGKSTLl~~iaGl------------~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~---~~~tv~enl~~ 65 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGF------------EQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALF---PHMTVEENVAF 65 (325)
T ss_pred CcCCCCCCHHHHHHHHHCC------------CCCCceEEEECCEECCCCCHHHCCEEEEecCcccc---CCCcHHHHHHH
Confidence 5899999999999999998 588999 99999876421 2245789999986543 36789999988
Q ss_pred HHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-
Q 007480 143 ALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN- 221 (602)
Q Consensus 143 aLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~- 221 (602)
++.. ++..... ..+.++++++.++.
T Consensus 66 ~~~~-------~~~~~~~-----------------------------------------------~~~~~~~~l~~~~l~ 91 (325)
T TIGR01187 66 GLKM-------RKVPRAE-----------------------------------------------IKPRVLEALRLVQLE 91 (325)
T ss_pred HHhh-------cCCCHHH-----------------------------------------------HHHHHHHHHHHcCCc
Confidence 6532 1111000 11122233333222
Q ss_pred CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH
Q 007480 222 DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE 301 (602)
Q Consensus 222 ~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~ 301 (602)
...++.+.++|++++++..++ ++++ ..|.+ .+.|||++.||+... ..+.+.+.+..+....+-..+|+..
T Consensus 92 ~~~~~~~~~LSgGq~qRvala---raL~-~~p~l---llLDEP~s~LD~~~~---~~l~~~l~~l~~~~g~tiiivTHd~ 161 (325)
T TIGR01187 92 EFADRKPHQLSGGQQQRVALA---RALV-FKPKI---LLLDEPLSALDKKLR---DQMQLELKTIQEQLGITFVFVTHDQ 161 (325)
T ss_pred chhcCChhhCCHHHHHHHHHH---HHHH-hCCCE---EEEeCCCccCCHHHH---HHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 112456778999999999988 4544 67777 899999999999984 4566666555432223334556533
Q ss_pred -HHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 302 -FVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 302 -l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
.+..+.+.+-.+++|.+-..++..+..
T Consensus 162 ~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 162 EEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 223345566677889886666655554
No 236
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.42 E-value=7.4e-13 Score=146.45 Aligned_cols=225 Identities=19% Similarity=0.208 Sum_probs=153.2
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGN 107 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~ 107 (602)
|++.+++.+..|....+...+++++|+.| +++||+|.+||||||+.+.|.|+....+ ..+.| |.+.|.
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~--------~~~~G~I~~~g~ 75 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGG--------RITSGEVILDGR 75 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCC--------cccceEEEECCc
Confidence 47888887777776655667999999999 9999999999999999999999851100 22478 988887
Q ss_pred ccCc-------cccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcc-cchhhhHHHHHHHHHHHhhhhhhh
Q 007480 108 PVEM-------EIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYN-LPETIREADISRLSFAVELAEEFY 179 (602)
Q Consensus 108 ~~~~-------~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN-~~~~i~e~~l~~L~~~~~L~~~i~ 179 (602)
++.. ...++++++++||+-..- .|-.++.+.+.-++.. +. ..+.
T Consensus 76 dl~~l~~~~~r~~rg~~Ia~i~Q~p~~sl-nP~~tIg~Qi~E~~~~-------h~~~~~~-------------------- 127 (539)
T COG1123 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSL-NPVMTIGDQIREALRL-------HGKGSRA-------------------- 127 (539)
T ss_pred chhcCCHHHHHHhccccEEEEecCchhhc-CchhhHHHHHHHHHHH-------hccccHH--------------------
Confidence 5532 124688999999975421 1234454544443322 11 1111
Q ss_pred cccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCC---CCCchhhhhHHHHHHhhcCCCcEEEccCccch
Q 007480 180 GRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKG---DKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLL 256 (602)
Q Consensus 180 ~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~---~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~ 256 (602)
+..+...+.|+.++.+.. ++.+.++|+|++|+..++ +.+...|.+
T Consensus 128 ---------------------------ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iA----mALa~~P~L- 175 (539)
T COG1123 128 ---------------------------EARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIA----MALALKPKL- 175 (539)
T ss_pred ---------------------------HHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHH----HHHhCCCCE-
Confidence 222333334444433111 246788999999998887 445578988
Q ss_pred hcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeecc-HHHHHHHHHHHHHHcCCCCCCCcchHHHHh
Q 007480 257 RTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNG-NEFVAFMEQILEALNKGEIPSTGSLVEVFN 329 (602)
Q Consensus 257 ~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG-~~l~~lv~~yv~aINsG~vP~~~sl~e~~n 329 (602)
.+.|||+..||+.-.. ++.+.|.++.+...+....+|+ ......+.+.+-.+.+|++-..+...++++
T Consensus 176 --LIaDEPTTaLDvt~q~---qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 176 --LIADEPTTALDVTTQA---QILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILS 244 (539)
T ss_pred --EEECCCccccCHHHHH---HHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence 8999999999999854 5555566665556666677877 456677777788889998877776666553
No 237
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=8.7e-13 Score=145.58 Aligned_cols=202 Identities=19% Similarity=0.182 Sum_probs=143.9
Q ss_pred cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc---cccCcceEEE
Q 007480 49 GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM---EIDGSRTSVF 121 (602)
Q Consensus 49 al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~---~~~~~~~~vv 121 (602)
+...++++++.+ +.++|+|+||||||||+|.|+|. .+++.| |.++|.+... ...++++++|
T Consensus 333 g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~------------~~~~~G~I~vng~~l~~l~~~~~~k~i~~v 400 (559)
T COG4988 333 GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGF------------LAPTQGEIRVNGIDLRDLSPEAWRKQISWV 400 (559)
T ss_pred CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCc------------CCCCCceEEECCccccccCHHHHHhHeeee
Confidence 337899999888 99999999999999999999998 488999 9999988753 2246789999
Q ss_pred eeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhc
Q 007480 122 YLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRD 201 (602)
Q Consensus 122 l~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRD 201 (602)
-|++--+ ..|++||+.++ + ...+++++.+....+++.+.+.. |
T Consensus 401 ~Q~p~lf----~gTireNi~l~-----------~--~~~s~e~i~~al~~a~l~~~v~~----------p---------- 443 (559)
T COG4988 401 SQNPYLF----AGTIRENILLA-----------R--PDASDEEIIAALDQAGLLEFVPK----------P---------- 443 (559)
T ss_pred CCCCccc----cccHHHHhhcc-----------C--CcCCHHHHHHHHHHhcHHHhhcC----------C----------
Confidence 9998776 45899999873 2 22456677777777776554311 2
Q ss_pred cCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHH
Q 007480 202 FLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKK 281 (602)
Q Consensus 202 f~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~ 281 (602)
+|. +..+ .+.-..+|+|+.++.+++ +++.-+ +.+ .+.|||++.||.+.-+ .+.+
T Consensus 444 --~GL------dt~i--------ge~G~~LSgGQ~QRlaLA---RAll~~-~~l---~llDEpTA~LD~etE~---~i~~ 497 (559)
T COG4988 444 --DGL------DTVI--------GEGGAGLSGGQAQRLALA---RALLSP-ASL---LLLDEPTAHLDAETEQ---IILQ 497 (559)
T ss_pred --Ccc------cchh--------ccCCCCCCHHHHHHHHHH---HHhcCC-CCE---EEecCCccCCCHhHHH---HHHH
Confidence 121 0011 112246899999999998 777755 444 6899999999999833 4566
Q ss_pred HHhhhcCCCccceEeeccHHHHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 282 LVASVTRPKIVQGKFLNGNEFVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 282 ~I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
.+.++.+.|+ ...+|++...-.-.+.+-.+++|.+-+.++-.+.
T Consensus 498 ~l~~l~~~kt--vl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L 541 (559)
T COG4988 498 ALQELAKQKT--VLVITHRLEDAADADRIVVLDNGRLVEQGTHEEL 541 (559)
T ss_pred HHHHHHhCCe--EEEEEcChHHHhcCCEEEEecCCceeccCCHHHH
Confidence 6677766554 3567776554444455666689999888775554
No 238
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.41 E-value=4.4e-12 Score=143.39 Aligned_cols=234 Identities=17% Similarity=0.149 Sum_probs=136.2
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGN 107 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~ 107 (602)
+++.+++.+.+| . ....+|+++++.+ ++++|+|+|||||||||++|+|. .+++.| |.+.+
T Consensus 3 ~~i~~~nls~~~--~-~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~------------~~p~~G~i~~~~- 66 (552)
T TIGR03719 3 YIYTMNRVSKVV--P-PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV------------DKEFNGEARPAP- 66 (552)
T ss_pred EEEEEeeEEEec--C-CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEecC-
Confidence 356666543333 2 1346899999988 89999999999999999999998 478999 87653
Q ss_pred ccCccccCcceEEEeeccccccccCCCCchhHHHHHHHhhhh--hhh--hcccchhhhHHHHHHH-HHHHhhhhhhhccc
Q 007480 108 PVEMEIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMS--SVL--IYNLPETIREADISRL-SFAVELAEEFYGRV 182 (602)
Q Consensus 108 ~~~~~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLS--S~~--IyN~~~~i~e~~l~~L-~~~~~L~~~i~~~~ 182 (602)
...+++++|++..+ +..|+.|++.+++...-. ..+ +........ .+.+.+ ....++.+.+.
T Consensus 67 -------~~~i~~v~Q~~~~~---~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--- 132 (552)
T TIGR03719 67 -------GIKVGYLPQEPQLD---PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPD-ADMDALLAEQAELQEIID--- 132 (552)
T ss_pred -------CCEEEEEeccCCCC---CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCc-hhhHHHHHHHHHHHHHHH---
Confidence 24689999986433 356899998876432000 000 000000000 000000 00001111100
Q ss_pred CCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCC
Q 007480 183 KGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCD 262 (602)
Q Consensus 183 ~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d 262 (602)
..+.....+.++++++..+.+..++.+.++|+|++++..++ .++ +..|.+ .|.|
T Consensus 133 -------------------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la---~al-~~~p~l---LLLD 186 (552)
T TIGR03719 133 -------------------AADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALC---RLL-LSKPDM---LLLD 186 (552)
T ss_pred -------------------hcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHH---HHH-hcCCCE---EEEc
Confidence 00001122345556665554323567889999999999998 444 467777 8999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCC-CCCcchHHHH
Q 007480 263 MKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEI-PSTGSLVEVF 328 (602)
Q Consensus 263 ~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~v-P~~~sl~e~~ 328 (602)
||++.||+...+ .+.+.+.+.. . .-..+++. .+..-+.+.+-.+++|.+ +..++..+..
T Consensus 187 EPt~~LD~~~~~---~l~~~L~~~~--~--tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 187 EPTNHLDAESVA---WLEQHLQEYP--G--TVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred CCCCCCChHHHH---HHHHHHHhCC--C--eEEEEeCCHHHHHhhcCeEEEEECCEEEEecCCHHHHH
Confidence 999999999954 5555555431 1 23345542 233334445556688875 4555555443
No 239
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.41 E-value=1.6e-12 Score=128.13 Aligned_cols=153 Identities=17% Similarity=0.165 Sum_probs=103.0
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc--ccCcceEEEee
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME--IDGSRTSVFYL 123 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~--~~~~~~~vvl~ 123 (602)
..+|+++++.+ ++++|+|+||+|||||+++|+|. .+++.| |++.+.+.... ..+..++++.+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (201)
T cd03231 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGL------------SPPLAGRVLLNGGPLDFQRDSIARGLLYLGH 80 (201)
T ss_pred ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEECCEecccccHHhhhheEEecc
Confidence 45799999888 99999999999999999999998 488999 99888765321 12356788887
Q ss_pred ccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccC
Q 007480 124 DTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFL 203 (602)
Q Consensus 124 DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~ 203 (602)
+..-+ +..++.|++.+.... ..++.++.+...+++.+
T Consensus 81 ~~~~~---~~~tv~e~l~~~~~~-------------~~~~~~~~~l~~~~l~~--------------------------- 117 (201)
T cd03231 81 APGIK---TTLSVLENLRFWHAD-------------HSDEQVEEALARVGLNG--------------------------- 117 (201)
T ss_pred ccccC---CCcCHHHHHHhhccc-------------ccHHHHHHHHHHcCChh---------------------------
Confidence 65322 356788887653100 01222222222222110
Q ss_pred CcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHH
Q 007480 204 QGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLV 283 (602)
Q Consensus 204 ~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I 283 (602)
..++.+.++|++++++..++ .+++ .+|.+ .+.|||++.||+...+ .+.+.+
T Consensus 118 -------------------~~~~~~~~LS~G~~qrl~la---ral~-~~p~l---lllDEPt~~LD~~~~~---~l~~~l 168 (201)
T cd03231 118 -------------------FEDRPVAQLSAGQQRRVALA---RLLL-SGRPL---WILDEPTTALDKAGVA---RFAEAM 168 (201)
T ss_pred -------------------hhcCchhhCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCCCCCCHHHHH---HHHHHH
Confidence 01234567888988888887 4444 56776 7899999999999954 555555
Q ss_pred hhh
Q 007480 284 ASV 286 (602)
Q Consensus 284 ~~~ 286 (602)
.+.
T Consensus 169 ~~~ 171 (201)
T cd03231 169 AGH 171 (201)
T ss_pred HHH
Confidence 544
No 240
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.41 E-value=8.7e-13 Score=140.04 Aligned_cols=220 Identities=18% Similarity=0.263 Sum_probs=136.9
Q ss_pred EEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcc
Q 007480 33 IVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNP 108 (602)
Q Consensus 33 lv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~ 108 (602)
++..++.+ +.+..+...+|+++++.| ++++|+|++||||||||+.|+|... .....++.| |.++|.+
T Consensus 80 ~i~~~nls--~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~-------~~~~~p~~G~I~idG~~ 150 (329)
T PRK14257 80 VFEIRNFN--FWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLND-------LIEGTSHEGEIYFLGTN 150 (329)
T ss_pred eEEEEeeE--EEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccc-------ccCCCCCceEEEECCEE
Confidence 45555433 333323345899999998 8999999999999999999999730 000015689 9999988
Q ss_pred cCcc-----ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHH----HHHHHHHHhhhhhhh
Q 007480 109 VEME-----IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREAD----ISRLSFAVELAEEFY 179 (602)
Q Consensus 109 ~~~~-----~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~----l~~L~~~~~L~~~i~ 179 (602)
+... ..+..++++++++..+ ..|++||+.|+... . +..+++. +......+++
T Consensus 151 i~~~~~~~~~lr~~i~~v~q~~~~~----~~ti~eNi~~~~~~--------~--~~~~~~~~~~~~~~~l~~~~L----- 211 (329)
T PRK14257 151 TRSKKISSLELRTRIGMVFQKPTPF----EMSIFDNVAYGPRN--------N--GINDRKILEKIVEKSLKSAAL----- 211 (329)
T ss_pred ccccccchHhhhccEEEEecCCccC----CCcHHHHHHhHHHh--------c--CCChHHHHHHHHHHHHHHcCC-----
Confidence 7421 1246799999997654 35899998875321 0 0001111 1111111110
Q ss_pred cccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcc
Q 007480 180 GRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTK 259 (602)
Q Consensus 180 ~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~ 259 (602)
| .+ ++..+ ++....+|++++++..++ +++. ..|.+ .
T Consensus 212 ----------------~-------~~------l~~~~--------~~~~~~LSgGqkqRl~LA---RAl~-~~p~I---l 247 (329)
T PRK14257 212 ----------------W-------DE------VKDDL--------DKAGNALSGGQQQRLCIA---RAIA-LEPEV---L 247 (329)
T ss_pred ----------------c-------ch------hhhhh--------hCCcccCCHHHHHHHHHH---HHHH-hCCCE---E
Confidence 0 00 00111 245678999999999888 5655 67777 7
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHHh
Q 007480 260 LCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVFN 329 (602)
Q Consensus 260 L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~n 329 (602)
+.|+|++.||+... ..+.+.|....+. ..-..+|+.. ...-+.+.+-.+++|.+-..++..+.+.
T Consensus 248 LLDEPts~LD~~~~---~~i~~~i~~l~~~--~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~ 313 (329)
T PRK14257 248 LMDEPTSALDPIAT---AKIEELILELKKK--YSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFI 313 (329)
T ss_pred EEeCCcccCCHHHH---HHHHHHHHHHhcC--CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 89999999999984 4466666655432 2334555532 2233356666678898877777777654
No 241
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.41 E-value=1.1e-12 Score=133.55 Aligned_cols=199 Identities=18% Similarity=0.233 Sum_probs=120.8
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCccccccc--C--CCcc-eEEcCcccCcc-----ccCc
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRD--T--KTKG-IWVWGNPVEME-----IDGS 116 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~--~--~TkG-Iwi~~~~~~~~-----~~~~ 116 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|.. . + ++.| |++.+.++... ..+.
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~-----------~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 86 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMN-----------DFVPNCKVKGELDIDGIDVYSVDTNVVLLRA 86 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc-----------ccCCCCCcceEEEECCEehHhcccchHHHhh
Confidence 45899999988 899999999999999999999973 1 1 4689 99988775321 1245
Q ss_pred ceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchh
Q 007480 117 RTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVW 196 (602)
Q Consensus 117 ~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw 196 (602)
.+++++++..-+. .++.||+.+.... ++... +....
T Consensus 87 ~i~~v~q~~~~~~----~tv~~ni~~~~~~-------~~~~~--~~~~~------------------------------- 122 (251)
T PRK14244 87 KVGMVFQKPNPFP----KSIYDNVAYGPKL-------HGLAK--NKKKL------------------------------- 122 (251)
T ss_pred hEEEEecCccccc----CCHHHHHHHHHHh-------cCCCC--CHHHH-------------------------------
Confidence 6899999864332 3788887765321 11100 00000
Q ss_pred hhhhccCCcccHHHHHHHHHHhCCCC-----CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHH
Q 007480 197 LIQRDFLQGKSVQEMVHDALQRVPND-----KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPI 271 (602)
Q Consensus 197 ~vvRDf~~g~t~~eyLe~aL~~~~~~-----~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~ 271 (602)
++.++++++.++.. ..++.+.++|+++++...++ .+++ ..|.+ .+.|||+++||+.
T Consensus 123 ------------~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la---ral~-~~p~l---lllDEPt~~LD~~ 183 (251)
T PRK14244 123 ------------DEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIA---RAIA-VKPTM---LLMDEPCSALDPV 183 (251)
T ss_pred ------------HHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCCccCCHH
Confidence 11111222221110 01244667899999988887 4544 56776 7899999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 272 YVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 272 F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
.. ..+.+.+.+..+ ...-..+++.. ...-+.+.+-.|++|.+-..++..+.
T Consensus 184 ~~---~~l~~~l~~~~~--~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 184 AT---NVIENLIQELKK--NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HH---HHHHHHHHHHhc--CCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 84 455666665532 23334455432 22223344455578877544444333
No 242
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.40 E-value=2.8e-11 Score=135.43 Aligned_cols=203 Identities=16% Similarity=0.175 Sum_probs=136.3
Q ss_pred ccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEee
Q 007480 48 EGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYL 123 (602)
Q Consensus 48 eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~ 123 (602)
....+++++++.+ +.||+||+||+||||||++|+|. ..++.| |...+ +.+++++-|
T Consensus 14 g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~------------~~~~~G~i~~~~--------~~~v~~l~Q 73 (530)
T COG0488 14 GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGE------------LEPDSGEVTRPK--------GLRVGYLSQ 73 (530)
T ss_pred CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCC------------CcCCCCeEeecC--------CceEEEeCC
Confidence 5667899999888 89999999999999999999998 578999 76543 246899999
Q ss_pred ccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHH---------HHhhhhhhhcccCCcccccCcccc
Q 007480 124 DTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSF---------AVELAEEFYGRVKGQDVAFEPAKL 194 (602)
Q Consensus 124 DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~---------~~~L~~~i~~~~~~e~~~f~P~~f 194 (602)
++.... ..++.|.++-+..-+ +... .+.+.+.. .-++....
T Consensus 74 ~~~~~~---~~tv~~~v~~~~~~~------~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~---------------- 123 (530)
T COG0488 74 EPPLDP---EKTVLDYVIEGFGEL------RELL-----AELEEAYALLADPDDELLAELEALL---------------- 123 (530)
T ss_pred CCCcCC---CccHHHHHHhhhHHH------HHHH-----HHHHHHHHhcccchhHHHHHHHHHH----------------
Confidence 986653 347777666544221 0000 01111110 00010000
Q ss_pred hhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHH
Q 007480 195 VWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVK 274 (602)
Q Consensus 195 lw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e 274 (602)
.+. +|-+.+...+.+|...+-+..++.+.++|++++.+..++ ...+..|.+ .|+|||++.||-+.++
T Consensus 124 -----~~~-~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA----~aL~~~pDl---LLLDEPTNHLD~~~i~ 190 (530)
T COG0488 124 -----EEL-DGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALA----RALLEEPDL---LLLDEPTNHLDLESIE 190 (530)
T ss_pred -----Hhh-cccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHH----HHHhcCCCE---EEEcCCCcccCHHHHH
Confidence 000 122445667777776665433788999999999999988 445688998 8999999999999954
Q ss_pred HHHHHHHHHhhhcCCCccceEeecc-HHHHHHHHHHHHHHcCCCCCC
Q 007480 275 RREQLKKLVASVTRPKIVQGKFLNG-NEFVAFMEQILEALNKGEIPS 320 (602)
Q Consensus 275 ~~~~L~~~I~~~~~pK~l~g~~ltG-~~l~~lv~~yv~aINsG~vP~ 320 (602)
-|.+++.+. +. .-..|++ +.|.+-+++.+-.+..|++..
T Consensus 191 ---WLe~~L~~~---~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~ 230 (530)
T COG0488 191 ---WLEDYLKRY---PG-TVIVVSHDRYFLDNVATHILELDRGKLTP 230 (530)
T ss_pred ---HHHHHHHhC---CC-cEEEEeCCHHHHHHHhhheEEecCCceeE
Confidence 455555533 22 3456776 677777777777778887644
No 243
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.40 E-value=7.4e-13 Score=134.85 Aligned_cols=196 Identities=15% Similarity=0.171 Sum_probs=119.2
Q ss_pred ccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc---cCcceEEEeec
Q 007480 52 TIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI---DGSRTSVFYLD 124 (602)
Q Consensus 52 iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~---~~~~~~vvl~D 124 (602)
+|+++++.+ ++++|+|+||||||||+++|+|. .+ .+| |.+.|+++.... ....+++++++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl------------~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~ 77 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGL------------LP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQ 77 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC------------CC-CCeEEEECCEecCcCCHHHHhhheEEeccc
Confidence 689999888 89999999999999999999997 34 489 999998764211 12457888887
Q ss_pred cccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCC
Q 007480 125 TEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQ 204 (602)
Q Consensus 125 teG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~ 204 (602)
...+. ..++.+|+.+.... .....
T Consensus 78 ~~~~~---~~tv~~nl~~~~~~--------~~~~~--------------------------------------------- 101 (248)
T PRK03695 78 QTPPF---AMPVFQYLTLHQPD--------KTRTE--------------------------------------------- 101 (248)
T ss_pred CccCC---CccHHHHHHhcCcc--------CCCcH---------------------------------------------
Confidence 64432 45777776543100 00000
Q ss_pred cccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEc------cCccchhcccCCCCCCCCCHHHHHHHH
Q 007480 205 GKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSL------PQPHLLRTKLCDMKDEELDPIYVKRRE 277 (602)
Q Consensus 205 g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L------~~P~~~~~~L~d~p~~~Ld~~F~e~~~ 277 (602)
...+.++++++..+. ...++.+.++|++++++..++ .+++. |.|.+ .+.|||++.||+...+
T Consensus 102 --~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la---~al~~~~~~~~p~p~l---lllDEPt~~LD~~~~~--- 170 (248)
T PRK03695 102 --AVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLA---AVVLQVWPDINPAGQL---LLLDEPMNSLDVAQQA--- 170 (248)
T ss_pred --HHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHH---HHHhccccccCCCCCE---EEEcCCcccCCHHHHH---
Confidence 001122223332222 111345678899999988887 45543 25566 7899999999999854
Q ss_pred HHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 278 QLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 278 ~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
.+.+.+.+..+ +...-..+++.. ...-+.+.+-.+++|.+-..++..+..
T Consensus 171 ~l~~~L~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 171 ALDRLLSELCQ-QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred HHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 55555555432 122233444432 233344455556888875555554443
No 244
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.40 E-value=1.1e-12 Score=134.33 Aligned_cols=217 Identities=19% Similarity=0.209 Sum_probs=126.3
Q ss_pred ccEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcC
Q 007480 31 FPIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWG 106 (602)
Q Consensus 31 iplv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~ 106 (602)
-|++.+++.+..+ ....+|+++++.+ ++++|+|+||||||||+++|+|. .+++.| |++.|
T Consensus 8 ~~~i~~~~~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~------------~~~~~G~v~~~G 71 (257)
T PRK14246 8 EDVFNISRLYLYI----NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRL------------IEIYDSKIKVDG 71 (257)
T ss_pred hhheeeeeEEEec----CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCcCceeEcC
Confidence 3456666543222 3345899999988 89999999999999999999998 467776 66554
Q ss_pred ------cccCc---cccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchh-hhHHHHHHHHHHHhhhh
Q 007480 107 ------NPVEM---EIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPET-IREADISRLSFAVELAE 176 (602)
Q Consensus 107 ------~~~~~---~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~-i~e~~l~~L~~~~~L~~ 176 (602)
.+... ...+..+++++++...+ +..++.||+.++... .+.... ...+.+..+...+++.+
T Consensus 72 ~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~---~~~tv~~nl~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~ 141 (257)
T PRK14246 72 KVLYFGKDIFQIDAIKLRKEVGMVFQQPNPF---PHLSIYDNIAYPLKS-------HGIKEKREIKKIVEECLRKVGLWK 141 (257)
T ss_pred EEEECCcccccCCHHHHhcceEEEccCCccC---CCCcHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHHcCCCc
Confidence 33321 11245689998876543 245888988765422 110000 00011111111111100
Q ss_pred hhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccch
Q 007480 177 EFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLL 256 (602)
Q Consensus 177 ~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~ 256 (602)
. +.. ..+..+..+|+++++...++ .++. .+|.+
T Consensus 142 ~----------------------------------~~~--------~~~~~~~~LS~G~~qrl~la---ral~-~~P~l- 174 (257)
T PRK14246 142 E----------------------------------VYD--------RLNSPASQLSGGQQQRLTIA---RALA-LKPKV- 174 (257)
T ss_pred c----------------------------------chh--------hhcCCcccCCHHHHHHHHHH---HHHH-cCCCE-
Confidence 0 000 01234567889998888887 4444 67777
Q ss_pred hcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 257 RTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 257 ~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
.+.|+|+.+||+... +.+.+.+.+... ...-..+++. .....+.+.+-.+++|.+-..++..+.
T Consensus 175 --lllDEPt~~LD~~~~---~~l~~~l~~~~~--~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 175 --LLMDEPTSMIDIVNS---QAIEKLITELKN--EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred --EEEcCCCccCCHHHH---HHHHHHHHHHhc--CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 789999999999984 566666655532 2222344442 222223344555578877555554444
No 245
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.40 E-value=6.8e-13 Score=133.11 Aligned_cols=181 Identities=15% Similarity=0.128 Sum_probs=108.3
Q ss_pred cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeec
Q 007480 49 GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLD 124 (602)
Q Consensus 49 al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~D 124 (602)
...+|+++++.+ ++++|+|+||||||||+++|+|. .+++.| |++.+.+.... ..
T Consensus 34 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~p~~G~i~~~g~~~~~~----------~~ 91 (224)
T cd03220 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI------------YPPDSGTVTVRGRVSSLL----------GL 91 (224)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEEchhh----------cc
Confidence 356899999988 89999999999999999999998 478999 99888654210 00
Q ss_pred cccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCC
Q 007480 125 TEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQ 204 (602)
Q Consensus 125 teG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~ 204 (602)
..++ .+..++.||+.+.... ++......
T Consensus 92 ~~~~--~~~~tv~enl~~~~~~-------~~~~~~~~------------------------------------------- 119 (224)
T cd03220 92 GGGF--NPELTGRENIYLNGRL-------LGLSRKEI------------------------------------------- 119 (224)
T ss_pred cccC--CCCCcHHHHHHHHHHH-------cCCCHHHH-------------------------------------------
Confidence 1122 2345788887654321 11100000
Q ss_pred cccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHH
Q 007480 205 GKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLV 283 (602)
Q Consensus 205 g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I 283 (602)
.+.++++++.++. +..++.+.++|+++++...++ .+++ ..|.+ .+.|||++.||+... ..+.+.+
T Consensus 120 ----~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la---ral~-~~p~l---lllDEP~~gLD~~~~---~~~~~~l 185 (224)
T cd03220 120 ----DEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFA---IATA-LEPDI---LLIDEVLAVGDAAFQ---EKCQRRL 185 (224)
T ss_pred ----HHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCcccCCHHHH---HHHHHHH
Confidence 0111222222211 111345678899999988887 4544 56776 789999999999984 4566666
Q ss_pred hhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCC
Q 007480 284 ASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEI 318 (602)
Q Consensus 284 ~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~v 318 (602)
.+..+. ...-..+++.. ....+.+.+-.+++|.+
T Consensus 186 ~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i 220 (224)
T cd03220 186 RELLKQ-GKTVILVSHDPSSIKRLCDRALVLEKGKI 220 (224)
T ss_pred HHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 555332 22223444422 22222333334455654
No 246
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.40 E-value=8.3e-13 Score=135.69 Aligned_cols=218 Identities=17% Similarity=0.195 Sum_probs=129.5
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccC--CCcc-eEEc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDT--KTKG-IWVW 105 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~--~TkG-Iwi~ 105 (602)
|++.+++.+.. +. ...+|+++++.+ ++++|+|+||||||||+++|+|+.. + .+ ++.| |++.
T Consensus 9 ~~l~i~~v~~~--~~--~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-------~--~~~~~~~G~i~~~ 75 (264)
T PRK14243 9 TVLRTENLNVY--YG--SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLND-------L--IPGFRVEGKVTFH 75 (264)
T ss_pred eEEEEeeeEEE--EC--CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhc-------c--cCCCCCceEEEEC
Confidence 35666654332 22 246899999988 8999999999999999999999730 0 01 3789 9999
Q ss_pred CcccCc-----cccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhc
Q 007480 106 GNPVEM-----EIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYG 180 (602)
Q Consensus 106 ~~~~~~-----~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~ 180 (602)
+.++.. ...+..+++++++...+. .++.||+.+.... .... ....+.+..+...+++.+
T Consensus 76 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~----~tv~enl~~~~~~-------~~~~-~~~~~~~~~~l~~~~l~~---- 139 (264)
T PRK14243 76 GKNLYAPDVDPVEVRRRIGMVFQKPNPFP----KSIYDNIAYGARI-------NGYK-GDMDELVERSLRQAALWD---- 139 (264)
T ss_pred CEEccccccChHHHhhhEEEEccCCcccc----ccHHHHHHhhhhh-------cCcc-hHHHHHHHHHHHHhCchh----
Confidence 877631 112456899998864332 3788888765321 0000 000111111111111100
Q ss_pred ccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhccc
Q 007480 181 RVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKL 260 (602)
Q Consensus 181 ~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L 260 (602)
.+...+ ++.+.++|++++++..++ ++++ .+|.+ .+
T Consensus 140 ------------------------------~l~~~~--------~~~~~~LSgGq~qrv~la---ral~-~~p~l---ll 174 (264)
T PRK14243 140 ------------------------------EVKDKL--------KQSGLSLSGGQQQRLCIA---RAIA-VQPEV---IL 174 (264)
T ss_pred ------------------------------hHHHHh--------cCCcccCCHHHHHHHHHH---HHHh-cCCCE---EE
Confidence 001111 345678899999999888 5554 67877 89
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHc---------CCCCCCCcchHHHH
Q 007480 261 CDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALN---------KGEIPSTGSLVEVF 328 (602)
Q Consensus 261 ~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aIN---------sG~vP~~~sl~e~~ 328 (602)
.|||+++||+...+ .+.+.+.+..+ ...-..+++. .....+.+.+-.|+ .|.+-..++..+..
T Consensus 175 LDEPt~~LD~~~~~---~l~~~L~~~~~--~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 175 MDEPCSALDPISTL---RIEELMHELKE--QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred EeCCCccCCHHHHH---HHHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 99999999999954 56666655533 2223344442 22233334455556 57776666665554
No 247
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.40 E-value=8e-13 Score=147.51 Aligned_cols=216 Identities=14% Similarity=0.165 Sum_probs=132.4
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccC-CCcc-eEEcC
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDT-KTKG-IWVWG 106 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~-~TkG-Iwi~~ 106 (602)
+++.+++.+.++.-+ ....+|+++++.+ ++++|+|||||||||||++|+|.. + ++.| |++.+
T Consensus 256 ~~l~~~~l~~~~~~~-~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~------------~p~~~G~i~~~g 322 (500)
T TIGR02633 256 VILEARNLTCWDVIN-PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAY------------PGKFEGNVFING 322 (500)
T ss_pred ceEEEeCCccccccc-ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCC------------CCCCCeEEEECC
Confidence 356666544322101 1245899999988 899999999999999999999983 5 4799 99988
Q ss_pred cccCcc----ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhccc
Q 007480 107 NPVEME----IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRV 182 (602)
Q Consensus 107 ~~~~~~----~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~ 182 (602)
+++... ..+..+++++|+......++..++.|++.++... . .... ...
T Consensus 323 ~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~---~--~~~~-~~~---------------------- 374 (500)
T TIGR02633 323 KPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLK---S--FCFK-MRI---------------------- 374 (500)
T ss_pred EECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhh---h--hccC-CcC----------------------
Confidence 776321 1135689999986411123456888887664311 0 0000 000
Q ss_pred CCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhccc
Q 007480 183 KGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKL 260 (602)
Q Consensus 183 ~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L 260 (602)
......+.++++|+.++.. ..++.+.++|++++++..++ .++ +..|.+ .+
T Consensus 375 ---------------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la---~al-~~~p~l---ll 426 (500)
T TIGR02633 375 ---------------------DAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLA---KML-LTNPRV---LI 426 (500)
T ss_pred ---------------------CHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHH---HHH-hhCCCE---EE
Confidence 0001123344455554432 23567789999999999998 444 467877 89
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCC
Q 007480 261 CDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPS 320 (602)
Q Consensus 261 ~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~ 320 (602)
.|||+++||+...+ .+.+.+.++.+ +...-..+++. .+..-+.+++-.+.+|.+-.
T Consensus 427 LDEPt~~LD~~~~~---~l~~~l~~l~~-~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 483 (500)
T TIGR02633 427 LDEPTRGVDVGAKY---EIYKLINQLAQ-EGVAIIVVSSELAEVLGLSDRVLVIGEGKLKG 483 (500)
T ss_pred EcCCCCCcCHhHHH---HHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999954 55555555432 22233455553 23333344555567787643
No 248
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.40 E-value=8.4e-13 Score=147.48 Aligned_cols=202 Identities=12% Similarity=0.117 Sum_probs=128.2
Q ss_pred cccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc----cCcceEEEe
Q 007480 51 ETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI----DGSRTSVFY 122 (602)
Q Consensus 51 ~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~----~~~~~~vvl 122 (602)
.+|+++++.+ ++++|+|||||||||||+.|+|. .+++.| |.+.|.++.... .+..+++++
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~------------~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~ 333 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGA------------LPRTSGYVTLDGHEVVTRSPQDGLANGIVYIS 333 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCC------------CCCCceEEEECCEECCCCCHHHHHHCCCEEec
Confidence 4689999888 89999999999999999999998 478899 999987664211 134689999
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
|+.......+..++.|++.+...... .+..+..
T Consensus 334 q~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~------------------------------------------ 366 (501)
T PRK10762 334 EDRKRDGLVLGMSVKENMSLTALRYF-----SRAGGSL------------------------------------------ 366 (501)
T ss_pred CccccCCCcCCCcHHHHhhhhhhhhh-----ccccccc------------------------------------------
Confidence 98631112235678888765421100 0000000
Q ss_pred CCcccHHHHHHHHHHhCCC--CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPN--DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLK 280 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~--~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~ 280 (602)
......+.++++|+.++. ...++.+.++|++++++..++ .+++ ..|.+ .+.|||++.||+...+ .+.
T Consensus 367 -~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA---~al~-~~p~l---llLDEPt~~LD~~~~~---~l~ 435 (501)
T PRK10762 367 -KHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIA---RGLM-TRPKV---LILDEPTRGVDVGAKK---EIY 435 (501)
T ss_pred -CHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHH---HHHh-hCCCE---EEEcCCCCCCCHhHHH---HHH
Confidence 001112334445555443 123567889999999999998 4444 67777 8999999999999954 555
Q ss_pred HHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcc
Q 007480 281 KLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGS 323 (602)
Q Consensus 281 ~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~s 323 (602)
+.+.+..+ +...-..+|+. .++.-+.+.+-.+++|.+-..++
T Consensus 436 ~~l~~~~~-~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~ 478 (501)
T PRK10762 436 QLINQFKA-EGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFT 478 (501)
T ss_pred HHHHHHHH-CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 55555432 22233455553 33333445556668887754433
No 249
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.40 E-value=1e-12 Score=136.58 Aligned_cols=226 Identities=15% Similarity=0.142 Sum_probs=147.1
Q ss_pred EeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCccc
Q 007480 34 VEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPV 109 (602)
Q Consensus 34 v~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~ 109 (602)
+++++.+-.|........+++++|+.+ +++||||.|||||||+.+.|+|++.. .....+.| |.+.|+++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~-------~~~~i~~G~i~f~g~~l 74 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPK-------PNARIVGGEILFDGKDL 74 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCC-------CCCeEeeeEEEECCccc
Confidence 344555555555555678999999999 99999999999999999999998510 00012567 88998865
Q ss_pred Cc-------cccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhccc
Q 007480 110 EM-------EIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRV 182 (602)
Q Consensus 110 ~~-------~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~ 182 (602)
.. +..++++++++||+...- .|-.++.+.+.-.+.. ++... -.+
T Consensus 75 ~~l~~~~~~~iRG~~I~mIfQ~p~~sL-nPv~~Ig~Qi~E~l~~-------h~~~~-~~~-------------------- 125 (316)
T COG0444 75 LSLSEKELRKIRGKEIAMIFQDPMTSL-NPVMTIGDQIAEVLRL-------HGKGL-SKK-------------------- 125 (316)
T ss_pred ccCCHHHHHhhcCceEEEEEcCchhhc-CChhhHHHHHHHHHHH-------hhcch-hhH--------------------
Confidence 42 124789999999986532 1344555555554432 11100 000
Q ss_pred CCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCC----CCCchhhhhHHHHHHhhcCCCcEEEccCccchhc
Q 007480 183 KGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKG----DKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRT 258 (602)
Q Consensus 183 ~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~----~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~ 258 (602)
+..+...+.|+.++.+.. +.++.++|++.+|+..++ ..+..+|.+
T Consensus 126 ------------------------ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IA----mala~~P~L--- 174 (316)
T COG0444 126 ------------------------EAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIA----MALALNPKL--- 174 (316)
T ss_pred ------------------------HHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHH----HHHhCCCCE---
Confidence 112222333333332211 456778999999998887 445578988
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHHHh
Q 007480 259 KLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEVFN 329 (602)
Q Consensus 259 ~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~~n 329 (602)
.+.|||+..||..-+.|+-+ ++.++.+.+...-..+|+. .++..+.++|..+..|.+-..++..+.+.
T Consensus 175 lIADEPTTALDvt~QaqIl~---Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~ 243 (316)
T COG0444 175 LIADEPTTALDVTVQAQILD---LLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK 243 (316)
T ss_pred EEeCCCcchhhHHHHHHHHH---HHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhc
Confidence 89999999999998655544 4444444444555678874 35666777788888999988887766653
No 250
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.40 E-value=9.8e-13 Score=135.98 Aligned_cols=216 Identities=18% Similarity=0.210 Sum_probs=130.1
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccC----CCcc-eE
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDT----KTKG-IW 103 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~----~TkG-Iw 103 (602)
|++.+++.+.++ +...+|+++++.+ ++++|+|+||||||||+++|+|+. .+ ++.| |+
T Consensus 19 ~~l~~~nl~~~~----~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~-----------~~~~~~~~~G~i~ 83 (274)
T PRK14265 19 SVFEVEGVKVFY----GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMN-----------DLIPGAKVEGRLL 83 (274)
T ss_pred ceEEEeeEEEEe----CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhccc-----------ccccCCCcCceEE
Confidence 356666543322 2345899999988 899999999999999999999973 11 2689 99
Q ss_pred EcCcccCc-----cccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhh
Q 007480 104 VWGNPVEM-----EIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEF 178 (602)
Q Consensus 104 i~~~~~~~-----~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i 178 (602)
+.+.++.. ...+..+++++++...+. .++.||+.++... ..... ..++.+..+...+++.+
T Consensus 84 ~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~----~tv~~nl~~~~~~-------~~~~~-~~~~~~~~~l~~~~l~~-- 149 (274)
T PRK14265 84 YRDRNIYDSQINSVKLRRQVGMVFQRPNPFP----KSIYENIAFAPRA-------NGYKG-NLDELVEDSLRRAAIWE-- 149 (274)
T ss_pred ECCEecccccchhHHHhhcEEEEccCCcccc----ccHHHHHHhHHHh-------cCchH-HHHHHHHHHHHHcccch--
Confidence 99877632 112457899999865332 3788888765321 11100 01111111111111100
Q ss_pred hcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhc
Q 007480 179 YGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRT 258 (602)
Q Consensus 179 ~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~ 258 (602)
.+...+ ++.+.++|++++++..++ .++ +.+|.+
T Consensus 150 --------------------------------~l~~~~--------~~~~~~LSgGq~qrv~LA---raL-~~~p~l--- 182 (274)
T PRK14265 150 --------------------------------EVKDKL--------KEKGTALSGGQQQRLCIA---RAI-AMKPDV--- 182 (274)
T ss_pred --------------------------------hhHHHh--------cCCcccCCHHHHHHHHHH---HHH-hhCCCE---
Confidence 001111 245678899999998888 444 477877
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHc---------CCCCCCCcchHHHH
Q 007480 259 KLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALN---------KGEIPSTGSLVEVF 328 (602)
Q Consensus 259 ~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aIN---------sG~vP~~~sl~e~~ 328 (602)
.+.|||+++||+... +.+.+.+.+..+ ...-..+++. .....+.+.+-.++ .|.+-..+...+..
T Consensus 183 llLDEPt~~LD~~~~---~~l~~~L~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 183 LLMDEPCSALDPIST---RQVEELCLELKE--QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred EEEeCCcccCCHHHH---HHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 899999999999994 566666665532 2223344442 23333445565666 57665555555544
No 251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.40 E-value=5.9e-13 Score=133.75 Aligned_cols=196 Identities=16% Similarity=0.190 Sum_probs=121.9
Q ss_pred cccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEEEee
Q 007480 51 ETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSVFYL 123 (602)
Q Consensus 51 ~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~vvl~ 123 (602)
.+++++++.+ ++++|+||||||||||++.|+|. .++++| |++.|.++... .....++++++
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 83 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRF------------YDVDSGRILIDGHDVRDYTLASLRRQIGLVSQ 83 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcc------------ccCCCCEEEECCEEhhhCCHHHHHhhEEEeCC
Confidence 5899999888 89999999999999999999998 488999 99998765321 12356889988
Q ss_pred ccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccC
Q 007480 124 DTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFL 203 (602)
Q Consensus 124 DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~ 203 (602)
|...+ ..+++||+.+... + .....+.......++.
T Consensus 84 ~~~~~----~~tv~enl~~~~~---------~----~~~~~~~~~~~~~~~~---------------------------- 118 (234)
T cd03251 84 DVFLF----NDTVAENIAYGRP---------G----ATREEVEEAARAANAH---------------------------- 118 (234)
T ss_pred CCeec----cccHHHHhhccCC---------C----CCHHHHHHHHHHcCcH----------------------------
Confidence 86433 2488888765321 0 0111122111111111
Q ss_pred CcccHHHHHHHHHHhCC---CCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHH
Q 007480 204 QGKSVQEMVHDALQRVP---NDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLK 280 (602)
Q Consensus 204 ~g~t~~eyLe~aL~~~~---~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~ 280 (602)
+.++..+ ....++.+.++|+++++...++ .+++ ..|.+ .+.|||+++||+.. .+.+.
T Consensus 119 ----------~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la---~al~-~~p~l---llLDEP~~~LD~~~---~~~l~ 178 (234)
T cd03251 119 ----------EFIMELPEGYDTVIGERGVKLSGGQRQRIAIA---RALL-KDPPI---LILDEATSALDTES---ERLVQ 178 (234)
T ss_pred ----------HHHHhcccCcceeeccCCCcCCHHHHHHHHHH---HHHh-cCCCE---EEEeCccccCCHHH---HHHHH
Confidence 1111110 0011345678999999998888 4544 66777 78999999999999 45666
Q ss_pred HHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHH
Q 007480 281 KLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVE 326 (602)
Q Consensus 281 ~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e 326 (602)
+.+.+..+ ...-..+++. ..... .+.+-.|++|.+...++..+
T Consensus 179 ~~l~~~~~--~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~~~ 222 (234)
T cd03251 179 AALERLMK--NRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEE 222 (234)
T ss_pred HHHHHhcC--CCEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCHHH
Confidence 66665532 2222344442 22222 44455568888765555433
No 252
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.39 E-value=4.7e-13 Score=133.22 Aligned_cols=164 Identities=18% Similarity=0.179 Sum_probs=106.8
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEEEe
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSVFY 122 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~vvl 122 (602)
..+++++++.+ ++++|+||||||||||+++|+|. .+++.| |++.+.++... ..+..+++++
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 84 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL------------YKPTSGSVLLDGTDIRQLDPADLRRNIGYVP 84 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------cCCCCCeEEECCEEhHHCCHHHHHhhEEEeC
Confidence 45899999888 89999999999999999999998 478999 99988765321 1234688998
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
++..-+. .++.|++.+... ...++.+..+...+++.+.... .|.
T Consensus 85 q~~~~~~----~tv~e~l~~~~~-------------~~~~~~~~~~l~~~~l~~~~~~---------~~~---------- 128 (220)
T cd03245 85 QDVTLFY----GTLRDNITLGAP-------------LADDERILRAAELAGVTDFVNK---------HPN---------- 128 (220)
T ss_pred CCCcccc----chHHHHhhcCCC-------------CCCHHHHHHHHHHcCcHHHHHh---------ccc----------
Confidence 8875332 377777654210 0112233333333333322210 010
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~ 282 (602)
|. ... ..+.+.++|++++++..++ .+++ .+|.+ .+.|||+++||+.. ...+.+.
T Consensus 129 --~~-------------~~~-~~~~~~~LSgG~~qrl~la---~al~-~~p~l---lllDEPt~~LD~~~---~~~l~~~ 182 (220)
T cd03245 129 --GL-------------DLQ-IGERGRGLSGGQRQAVALA---RALL-NDPPI---LLLDEPTSAMDMNS---EERLKER 182 (220)
T ss_pred --cc-------------cce-ecCCCccCCHHHHHHHHHH---HHHh-cCCCE---EEEeCccccCCHHH---HHHHHHH
Confidence 00 000 0234568899999988887 4444 56777 78999999999999 4566666
Q ss_pred Hhhhc
Q 007480 283 VASVT 287 (602)
Q Consensus 283 I~~~~ 287 (602)
+.+..
T Consensus 183 l~~~~ 187 (220)
T cd03245 183 LRQLL 187 (220)
T ss_pred HHHhc
Confidence 66654
No 253
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.39 E-value=2.2e-12 Score=141.76 Aligned_cols=206 Identities=17% Similarity=0.222 Sum_probs=146.6
Q ss_pred ccEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcC
Q 007480 31 FPIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWG 106 (602)
Q Consensus 31 iplv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~ 106 (602)
-|+++..+.+.+| .+.++|+++++.+ +|.+++|.||+|||||||+|+|. .++|.| |++.|
T Consensus 6 ~~ll~~~~i~K~F----ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv------------~~p~~G~I~~~G 69 (500)
T COG1129 6 PPLLELRGISKSF----GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGV------------YPPDSGEILIDG 69 (500)
T ss_pred cceeeeecceEEc----CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCc------------ccCCCceEEECC
Confidence 4577777655555 6778999999988 99999999999999999999998 589999 99999
Q ss_pred cccCcc----ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhccc
Q 007480 107 NPVEME----IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRV 182 (602)
Q Consensus 107 ~~~~~~----~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~ 182 (602)
++.... .....+.+|+|+... +|++|+.+|+.++-
T Consensus 70 ~~~~~~sp~~A~~~GI~~V~QEl~L---~p~LsVaeNifLgr-------------------------------------- 108 (500)
T COG1129 70 KPVAFSSPRDALAAGIATVHQELSL---VPNLSVAENIFLGR-------------------------------------- 108 (500)
T ss_pred EEccCCCHHHHHhCCcEEEeechhc---cCCccHHHHhhccc--------------------------------------
Confidence 988642 235678999998754 45789999876421
Q ss_pred CCcccccCccc-chhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhccc
Q 007480 183 KGQDVAFEPAK-LVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKL 260 (602)
Q Consensus 183 ~~e~~~f~P~~-flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L 260 (602)
.|.. +.| + +-+...+...++|+..+. ...+..+.+++..++|+..++ +++.. .+.+ .+
T Consensus 109 -------e~~~~~g~-i-----d~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIA---rAl~~-~arl---lI 168 (500)
T COG1129 109 -------EPTRRFGL-I-----DRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIA---RALSF-DARV---LI 168 (500)
T ss_pred -------ccccCCCc-c-----CHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHH---HHHhc-CCCE---EE
Confidence 1211 122 1 223445555666665543 223677889999999999998 66654 4444 68
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHHH-HHHHHHHHHHHcCCC
Q 007480 261 CDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNEF-VAFMEQILEALNKGE 317 (602)
Q Consensus 261 ~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~l-~~lv~~yv~aINsG~ 317 (602)
.|||++.|++.- .+.|-+.|..+. .+.+.-..+++.+- .--+++.+..+.+|.
T Consensus 169 lDEPTaaLt~~E---~~~Lf~~ir~Lk-~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~ 222 (500)
T COG1129 169 LDEPTAALTVKE---TERLFDLIRRLK-AQGVAIIYISHRLDEVFEIADRITVLRDGR 222 (500)
T ss_pred EcCCcccCCHHH---HHHHHHHHHHHH-hCCCEEEEEcCcHHHHHHhcCEEEEEeCCE
Confidence 999999999886 566777776653 45666678888432 223556666677775
No 254
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.39 E-value=7.7e-13 Score=147.76 Aligned_cols=201 Identities=14% Similarity=0.125 Sum_probs=128.2
Q ss_pred cccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc----ccCcceEEEe
Q 007480 51 ETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME----IDGSRTSVFY 122 (602)
Q Consensus 51 ~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~----~~~~~~~vvl 122 (602)
.+++++++.+ ++++|+||||||||||++.|+|. .+++.| |++.++++... ..+..++++.
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~------------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 334 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGA------------TRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCP 334 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCC------------CcCCCceEEECCEECCCCCHHHHHhCCCEEcC
Confidence 4789999888 89999999999999999999998 478899 99988765321 1135688999
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
|+.......+..++.|++.+.... +. .+..+ | .
T Consensus 335 q~~~~~~~~~~~tv~e~l~~~~~~-------~~----------------------------------~~~~~-~---~-- 367 (501)
T PRK11288 335 EDRKAEGIIPVHSVADNINISARR-------HH----------------------------------LRAGC-L---I-- 367 (501)
T ss_pred cCHhhCCCcCCCCHHHHhccccch-------hh----------------------------------ccccc-c---c--
Confidence 986411122356788876653210 00 00000 0 0
Q ss_pred CCcccHHHHHHHHHHhCCC--CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPN--DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLK 280 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~--~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~ 280 (602)
......+.+++.|+..+. ...++.+.++|++++++..++ .++ +..|.+ .++|||+++||+... .++.
T Consensus 368 -~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la---~al-~~~p~l---llLDEPt~~LD~~~~---~~l~ 436 (501)
T PRK11288 368 -NNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILG---RWL-SEDMKV---ILLDEPTRGIDVGAK---HEIY 436 (501)
T ss_pred -ChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHH---HHH-ccCCCE---EEEcCCCCCCCHhHH---HHHH
Confidence 000112334455555443 223677889999999999998 444 477887 899999999999994 5566
Q ss_pred HHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCc
Q 007480 281 KLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTG 322 (602)
Q Consensus 281 ~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~ 322 (602)
+.|.++.+. ...-..+++. .+..-+.+++-.|++|.+-..+
T Consensus 437 ~~l~~l~~~-g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~ 478 (501)
T PRK11288 437 NVIYELAAQ-GVAVLFVSSDLPEVLGVADRIVVMREGRIAGEL 478 (501)
T ss_pred HHHHHHHhC-CCEEEEECCCHHHHHhhCCEEEEEECCEEEEEE
Confidence 666555332 2233455553 3333445555567788764443
No 255
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.39 E-value=7.8e-13 Score=150.40 Aligned_cols=201 Identities=14% Similarity=0.180 Sum_probs=133.9
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEEEe
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSVFY 122 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~vvl 122 (602)
..+|+++++.+ +.++|+|++|||||||++.|+|. .+|++| |.++|.++..- ..++.++++.
T Consensus 348 ~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl------------~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 415 (588)
T PRK13657 348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRV------------FDPQSGRILIDGTDIRTVTRASLRRNIAVVF 415 (588)
T ss_pred CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcC------------cCCCCCEEEECCEEhhhCCHHHHHhheEEEe
Confidence 45899999988 99999999999999999999998 488999 99999887531 2357899999
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
||+.-+. +|++||+.++ ....+++++......+++.+.+.. .|
T Consensus 416 Q~~~lf~----~Ti~~Ni~~~-------------~~~~~d~~i~~al~~~~l~~~i~~---------lp----------- 458 (588)
T PRK13657 416 QDAGLFN----RSIEDNIRVG-------------RPDATDEEMRAAAERAQAHDFIER---------KP----------- 458 (588)
T ss_pred cCccccc----ccHHHHHhcC-------------CCCCCHHHHHHHHHHhCHHHHHHh---------Cc-----------
Confidence 9987774 5899998652 123445666666666666554321 12
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~ 282 (602)
+|. +..+ .+.-..+|+|++|+..++ +++. ..|.+ .+.|||++.||++.. ..+.+.
T Consensus 459 -~gl------dt~i--------~~~g~~LSgGq~QRialA---Rall-~~~~i---liLDEpts~LD~~t~---~~i~~~ 513 (588)
T PRK13657 459 -DGY------DTVV--------GERGRQLSGGERQRLAIA---RALL-KDPPI---LILDEATSALDVETE---AKVKAA 513 (588)
T ss_pred -ccc------cchh--------cCCCCCCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCccCCCHHHH---HHHHHH
Confidence 111 0011 112246899999998888 5655 55655 789999999999984 455555
Q ss_pred HhhhcCCCccceEeeccHHHHHHHHHHHHHHcCCCCCCCcchHH
Q 007480 283 VASVTRPKIVQGKFLNGNEFVAFMEQILEALNKGEIPSTGSLVE 326 (602)
Q Consensus 283 I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aINsG~vP~~~sl~e 326 (602)
+.+..+ ...-..+|+..-.--..+.+-.+++|.+...++-.+
T Consensus 514 l~~~~~--~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~ 555 (588)
T PRK13657 514 LDELMK--GRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDE 555 (588)
T ss_pred HHHHhc--CCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 655432 333456777542111122233357788766665433
No 256
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.39 E-value=4e-13 Score=156.02 Aligned_cols=209 Identities=17% Similarity=0.191 Sum_probs=137.4
Q ss_pred eEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc---ccc
Q 007480 42 KLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM---EID 114 (602)
Q Consensus 42 ~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~---~~~ 114 (602)
.|.+. +...+|+++++.+ +.|+|+|++|||||||++.|+|+ .+|++| |.++|.++.. ...
T Consensus 480 sf~y~-~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl------------~~p~~G~I~idg~~i~~~~~~~l 546 (708)
T TIGR01193 480 SYSYG-YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF------------FQARSGEILLNGFSLKDIDRHTL 546 (708)
T ss_pred EEEcC-CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhcc------------CCCCCcEEEECCEEHHHcCHHHH
Confidence 34443 2356899999988 89999999999999999999998 489999 9999988753 123
Q ss_pred CcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccc
Q 007480 115 GSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKL 194 (602)
Q Consensus 115 ~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~f 194 (602)
++.++++.||+..|. +|++||+.++. ....+++++.+.....++.+.+.. .|.
T Consensus 547 r~~i~~v~Q~~~lf~----gTI~eNi~l~~------------~~~~~~~~i~~a~~~a~l~~~i~~---------lp~-- 599 (708)
T TIGR01193 547 RQFINYLPQEPYIFS----GSILENLLLGA------------KENVSQDEIWAACEIAEIKDDIEN---------MPL-- 599 (708)
T ss_pred HHheEEEecCceehh----HHHHHHHhccC------------CCCCCHHHHHHHHHHhCCHHHHHh---------ccc--
Confidence 578999999998774 58999987631 123445556666555555443311 121
Q ss_pred hhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHH
Q 007480 195 VWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVK 274 (602)
Q Consensus 195 lw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e 274 (602)
|. +..- .+.-..+|+|++|+..++ +++. ..|.+ .+.|||++.||++..
T Consensus 600 ----------gl----------dt~i----~e~G~~LSgGQrQRialA---Rall-~~p~i---liLDE~Ts~LD~~te- 647 (708)
T TIGR01193 600 ----------GY----------QTEL----SEEGSSISGGQKQRIALA---RALL-TDSKV---LILDESTSNLDTITE- 647 (708)
T ss_pred ----------cc----------CcEe----cCCCCCCCHHHHHHHHHH---HHHh-hCCCE---EEEeCccccCCHHHH-
Confidence 10 0000 112246899999999998 6765 66776 789999999999984
Q ss_pred HHHHHHHHHhhhcCCCccceEeeccHHHHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 275 RREQLKKLVASVTRPKIVQGKFLNGNEFVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 275 ~~~~L~~~I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
+.+.+.+.+. +.++ -..++++.-.--..+.+-.+++|.+...++-.+.
T Consensus 648 --~~i~~~L~~~-~~~T--~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L 695 (708)
T TIGR01193 648 --KKIVNNLLNL-QDKT--IIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDEL 695 (708)
T ss_pred --HHHHHHHHHh-cCCE--EEEEecchHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 3555556543 3333 3566664321111223333477887666664433
No 257
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.39 E-value=1.5e-12 Score=132.96 Aligned_cols=199 Identities=18% Similarity=0.174 Sum_probs=114.8
Q ss_pred EEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcc
Q 007480 33 IVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNP 108 (602)
Q Consensus 33 lv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~ 108 (602)
++..++.+..+ . ...+|+++++.+ ++++|+|+||||||||+++|+|. .++++| |.+.+
T Consensus 4 ~l~~~~l~~~~--~--~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl------------~~p~~G~i~~~~-- 65 (251)
T PRK09544 4 LVSLENVSVSF--G--QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGL------------VAPDEGVIKRNG-- 65 (251)
T ss_pred EEEEeceEEEE--C--CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECC--
Confidence 55665543322 2 245899999888 99999999999999999999998 478999 87654
Q ss_pred cCccccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccc
Q 007480 109 VEMEIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVA 188 (602)
Q Consensus 109 ~~~~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~ 188 (602)
...++++++|...+... ..++.++..+ + . ....+.+
T Consensus 66 ------~~~i~~v~q~~~~~~~l-~~~~~~~~~~-----------~--~-~~~~~~~----------------------- 101 (251)
T PRK09544 66 ------KLRIGYVPQKLYLDTTL-PLTVNRFLRL-----------R--P-GTKKEDI----------------------- 101 (251)
T ss_pred ------ccCEEEecccccccccc-ChhHHHHHhc-----------c--c-cccHHHH-----------------------
Confidence 23588998886332211 0122222110 0 0 0001111
Q ss_pred cCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCC
Q 007480 189 FEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEE 267 (602)
Q Consensus 189 f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~ 267 (602)
..+++.++. ...++.+.++|+++++...++ .+++ ..|.+ .+.|||+++
T Consensus 102 ------------------------~~~l~~~gl~~~~~~~~~~LSgGq~qrv~la---ral~-~~p~l---llLDEPt~~ 150 (251)
T PRK09544 102 ------------------------LPALKRVQAGHLIDAPMQKLSGGETQRVLLA---RALL-NRPQL---LVLDEPTQG 150 (251)
T ss_pred ------------------------HHHHHHcCChHHHhCChhhCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCCcC
Confidence 122222221 111345678899999988887 4443 67777 799999999
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 268 LDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 268 Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
||+... ..+.+.+.+..+.....-..+++. ....-+.+.+-.+++ .+...++..+..
T Consensus 151 LD~~~~---~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~ 208 (251)
T PRK09544 151 VDVNGQ---VALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVS 208 (251)
T ss_pred CCHHHH---HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHh
Confidence 999994 456666655432212222344442 222223344444443 454444444443
No 258
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.39 E-value=5.5e-12 Score=141.89 Aligned_cols=214 Identities=19% Similarity=0.207 Sum_probs=129.5
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeecc
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLDT 125 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~Dt 125 (602)
..+|+++++.+ ++++|+|||||||||||++|+|. .++++| |.+.+. ..+++++|+.
T Consensus 14 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl------------~~p~~G~i~~~~~--------~~i~~~~q~~ 73 (530)
T PRK15064 14 KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGD------------LEPSAGNVSLDPN--------ERLGKLRQDQ 73 (530)
T ss_pred cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEecCC--------CEEEEEeccC
Confidence 45899999988 89999999999999999999998 478899 887652 3578898876
Q ss_pred ccccccCCCCchhHHHHHHHhhhhhh-----hhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhh
Q 007480 126 EGFESIGKSNVYDDRIFALATVMSSV-----LIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQR 200 (602)
Q Consensus 126 eG~~~~~~~tv~d~~ifaLa~LLSS~-----~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvR 200 (602)
..+ +..++.|++.++...+ ... .++.... .... ....+.+..+.+ .
T Consensus 74 ~~~---~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~---------------------~ 124 (530)
T PRK15064 74 FAF---EEFTVLDTVIMGHTEL-WEVKQERDRIYALPE-MSEE---DGMKVADLEVKF---------------------A 124 (530)
T ss_pred CcC---CCCcHHHHHHHhhHHH-HHHHHHHHHHhcccc-cccc---hHHHHHHHHHHH---------------------H
Confidence 433 3568899987754210 000 0000000 0000 000000000000 0
Q ss_pred ccCCcccHHHHHHHHHHhCCCCC--CCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHH
Q 007480 201 DFLQGKSVQEMVHDALQRVPNDK--GDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQ 278 (602)
Q Consensus 201 Df~~g~t~~eyLe~aL~~~~~~~--~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~ 278 (602)
.. .+....+.++++|+.++... .++.+.++|++++++..++ +.++..|.+ .+.|||++.||++..+ .
T Consensus 125 ~~-~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA----~aL~~~p~l---LlLDEPt~~LD~~~~~---~ 193 (530)
T PRK15064 125 EM-DGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLA----QALFSNPDI---LLLDEPTNNLDINTIR---W 193 (530)
T ss_pred hc-CchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHH----HHHhcCCCE---EEEcCCCcccCHHHHH---H
Confidence 00 11122345667777776532 2356789999999999998 444577887 8999999999999954 5
Q ss_pred HHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCC-CCCcchHHH
Q 007480 279 LKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEI-PSTGSLVEV 327 (602)
Q Consensus 279 L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~v-P~~~sl~e~ 327 (602)
+.+.+.+ ....-..+++. .+..-+.+.+-.+++|.+ ...++..+.
T Consensus 194 l~~~l~~----~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~ 240 (530)
T PRK15064 194 LEDVLNE----RNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEY 240 (530)
T ss_pred HHHHHHh----CCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCHHHH
Confidence 5555542 12222345553 333344455666688887 345554444
No 259
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.38 E-value=2.7e-13 Score=139.65 Aligned_cols=199 Identities=21% Similarity=0.270 Sum_probs=142.4
Q ss_pred cccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-------ccCcceEEE
Q 007480 53 IRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-------IDGSRTSVF 121 (602)
Q Consensus 53 L~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-------~~~~~~~vv 121 (602)
++++++.| +|..|+|.+|||||||++++.++ ..||.| |++.|.++..- ..++++++|
T Consensus 44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrL------------iept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMV 111 (386)
T COG4175 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRL------------IEPTRGEILVDGKDIAKLSAAELRELRRKKISMV 111 (386)
T ss_pred eccceeeecCCeEEEEEecCCCCHHHHHHHHhcc------------CCCCCceEEECCcchhcCCHHHHHHHHhhhhhhh
Confidence 57788888 99999999999999999999999 589999 99999887531 136789999
Q ss_pred eeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhc
Q 007480 122 YLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRD 201 (602)
Q Consensus 122 l~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRD 201 (602)
||.. ..+|+.|+.||..|+|.+ -+++..
T Consensus 112 FQ~F---aLlPhrtVl~Nv~fGLev-------~Gv~~~------------------------------------------ 139 (386)
T COG4175 112 FQSF---ALLPHRTVLENVAFGLEV-------QGVPKA------------------------------------------ 139 (386)
T ss_pred hhhh---ccccchhHhhhhhcceee-------cCCCHH------------------------------------------
Confidence 9875 445689999999998865 222211
Q ss_pred cCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHH-HH
Q 007480 202 FLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRRE-QL 279 (602)
Q Consensus 202 f~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~-~L 279 (602)
+-.+...++|+.++. .-.++++.++|++.+|+.-++ ++++ ..|.+ .|.||+.+.|||--..++. +|
T Consensus 140 -----er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLA---RAla-~~~~I---lLMDEaFSALDPLIR~~mQdeL 207 (386)
T COG4175 140 -----EREERALEALELVGLEGYADKYPNELSGGMQQRVGLA---RALA-NDPDI---LLMDEAFSALDPLIRTEMQDEL 207 (386)
T ss_pred -----HHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHH---HHHc-cCCCE---EEecCchhhcChHHHHHHHHHH
Confidence 233444555666654 223677889999999999888 6776 56666 7899999999998754332 34
Q ss_pred HHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHHhHH
Q 007480 280 KKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVFNKG 331 (602)
Q Consensus 280 ~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~n~~ 331 (602)
.++-.++ .|++ ..+|+.- -+--+-+.+..+..|.+..+++..|+..+.
T Consensus 208 l~Lq~~l--~KTI--vFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~P 256 (386)
T COG4175 208 LELQAKL--KKTI--VFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNP 256 (386)
T ss_pred HHHHHHh--CCeE--EEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCc
Confidence 4433333 2332 4566532 223456667777889999999988887543
No 260
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.38 E-value=7.8e-13 Score=147.24 Aligned_cols=193 Identities=15% Similarity=0.031 Sum_probs=116.4
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc---cCcceEEEe
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI---DGSRTSVFY 122 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~---~~~~~~vvl 122 (602)
..+|+++++.+ ++++|+|||||||||||++|+|. .+++.| |++.+.++.... ....+++++
T Consensus 16 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~------------~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 83 (490)
T PRK10938 16 TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGE------------LPLLSGERQSQFSHITRLSFEQLQKLVSDEW 83 (490)
T ss_pred eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc------------CCCCCceEEECCcccccCCHHHHHHHhceec
Confidence 45899999988 89999999999999999999998 478999 888776543110 123467777
Q ss_pred eccccccccC-----CCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhh
Q 007480 123 LDTEGFESIG-----KSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWL 197 (602)
Q Consensus 123 ~DteG~~~~~-----~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~ 197 (602)
|+.......+ ..++.++..+
T Consensus 84 q~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------- 108 (490)
T PRK10938 84 QRNNTDMLSPGEDDTGRTTAEIIQD------------------------------------------------------- 108 (490)
T ss_pred cCcchhhcccchhhccccHHHhccc-------------------------------------------------------
Confidence 7642100000 0011111000
Q ss_pred hhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHH
Q 007480 198 IQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRR 276 (602)
Q Consensus 198 vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~ 276 (602)
+....+.++++++.++. ...++.+.++|++++++..++ +..+.+|.+ .+.|||+++||++..
T Consensus 109 -------~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la----~al~~~p~l---llLDEPt~~LD~~~~--- 171 (490)
T PRK10938 109 -------EVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLC----QALMSEPDL---LILDEPFDGLDVASR--- 171 (490)
T ss_pred -------chhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHH----HHHHcCCCE---EEEcCCcccCCHHHH---
Confidence 00112233444444433 122567789999999999998 444467877 899999999999995
Q ss_pred HHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 277 EQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 277 ~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
..+.+.+.+..+ +...-..+++. ....-+.+.+-.+++|.+-..++..+.
T Consensus 172 ~~l~~~l~~~~~-~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 222 (490)
T PRK10938 172 QQLAELLASLHQ-SGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEI 222 (490)
T ss_pred HHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 455555655432 22222344443 222223344445688877544444333
No 261
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.38 E-value=3.6e-12 Score=130.46 Aligned_cols=201 Identities=17% Similarity=0.243 Sum_probs=121.3
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCC-----Ccc-eEEcCcccCc-----cccC
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTK-----TKG-IWVWGNPVEM-----EIDG 115 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~-----TkG-Iwi~~~~~~~-----~~~~ 115 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|.. ++ ++| |.+.+.++.. ...+
T Consensus 20 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~------------~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 87 (259)
T PRK14260 20 SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRIS------------ELEGPVKVEGVVDFFGQNIYDPRININRLR 87 (259)
T ss_pred eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc------------CcccCCccceEEEECCEeccccccchHhhh
Confidence 45899999988 899999999999999999999973 32 589 9998876632 1123
Q ss_pred cceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhccc-chhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccc
Q 007480 116 SRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNL-PETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKL 194 (602)
Q Consensus 116 ~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~-~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~f 194 (602)
..+++++++...+ + .++.||+.++... ++. .....++.+.++...+++.+.
T Consensus 88 ~~i~~v~q~~~l~---~-~tv~enl~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~~----------------- 139 (259)
T PRK14260 88 RQIGMVFQRPNPF---P-MSIYENVAYGVRI-------SAKLPQADLDEIVESALKGAALWQE----------------- 139 (259)
T ss_pred hheEEEecccccC---C-ccHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHcCCcch-----------------
Confidence 5689999886543 2 5888888765422 111 000001111111111111000
Q ss_pred hhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHH
Q 007480 195 VWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVK 274 (602)
Q Consensus 195 lw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e 274 (602)
++.. .++.+.++|++++++..++ ++++ ..|.+ .+.|||+++||+...
T Consensus 140 -----------------l~~~--------~~~~~~~LS~G~~qrv~la---ral~-~~p~l---llLDEPt~~LD~~~~- 186 (259)
T PRK14260 140 -----------------VKDK--------LNKSALGLSGGQQQRLCIA---RALA-IKPKV---LLMDEPCSALDPIAT- 186 (259)
T ss_pred -----------------hhhH--------hcCCcccCCHHHHHHHHHH---HHHh-cCCCE---EEEcCCCccCCHHHH-
Confidence 0001 1345678999999998888 5554 67777 789999999999984
Q ss_pred HHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHc-----CCCCCCCcchHHH
Q 007480 275 RREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALN-----KGEIPSTGSLVEV 327 (602)
Q Consensus 275 ~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aIN-----sG~vP~~~sl~e~ 327 (602)
..+.+.+.+..+ ...-..+++. ....-+.+.+-.++ .|.+...++..+.
T Consensus 187 --~~l~~~l~~~~~--~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~ 241 (259)
T PRK14260 187 --MKVEELIHSLRS--ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQI 241 (259)
T ss_pred --HHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHH
Confidence 456666665532 2222344442 12222233344555 3777665555544
No 262
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.38 E-value=1e-12 Score=147.12 Aligned_cols=198 Identities=13% Similarity=0.156 Sum_probs=124.0
Q ss_pred ccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc----cCcceEEEee
Q 007480 52 TIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI----DGSRTSVFYL 123 (602)
Q Consensus 52 iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~----~~~~~~vvl~ 123 (602)
+|+++++.+ ++++|+||||||||||++.|+|. .+++.| |++.+.++.... .+..+++++|
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl------------~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q 345 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGL------------RPARGGRIMLNGKEINALSTAQRLARGLVYLPE 345 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCC------------CCCCCcEEEECCEECCCCCHHHHHhCCcEECCC
Confidence 589999888 89999999999999999999998 488899 999887664211 1245788888
Q ss_pred ccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccC
Q 007480 124 DTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFL 203 (602)
Q Consensus 124 DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~ 203 (602)
+.......+..++.+++...... . + + + + .
T Consensus 346 ~~~~~~l~~~~t~~~~l~~~~~~----~--~------------------------------------~--~-~---~--- 374 (510)
T PRK15439 346 DRQSSGLYLDAPLAWNVCALTHN----R--R------------------------------------G--F-W---I--- 374 (510)
T ss_pred ChhhCCccCCCcHHHHHHhhhhh----h--h------------------------------------c--c-c---c---
Confidence 75321112345666665431100 0 0 0 0 0 0
Q ss_pred CcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHH
Q 007480 204 QGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKK 281 (602)
Q Consensus 204 ~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~ 281 (602)
.....++.++++|+.++.. ..++.+.++|+|++++..++ .++ +.+|.+ .+.|||+++||+...+ .+.+
T Consensus 375 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la---~al-~~~p~l---LlLDEPt~gLD~~~~~---~l~~ 444 (510)
T PRK15439 375 KPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIA---KCL-EASPQL---LIVDEPTRGVDVSARN---DIYQ 444 (510)
T ss_pred ChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHH---HHH-hhCCCE---EEECCCCcCcChhHHH---HHHH
Confidence 0001122344455554432 23567889999999999998 444 467887 8999999999999954 5555
Q ss_pred HHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcc
Q 007480 282 LVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGS 323 (602)
Q Consensus 282 ~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~s 323 (602)
.|.++.+ +...-..+++. .++.-+.+.+-.+.+|.+-...+
T Consensus 445 ~l~~l~~-~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~ 486 (510)
T PRK15439 445 LIRSIAA-QNVAVLFISSDLEEIEQMADRVLVMHQGEISGALT 486 (510)
T ss_pred HHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 5555543 22333455553 33333445555667787654433
No 263
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.38 E-value=7.9e-13 Score=150.13 Aligned_cols=207 Identities=18% Similarity=0.182 Sum_probs=136.2
Q ss_pred eEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---cc
Q 007480 42 KLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---ID 114 (602)
Q Consensus 42 ~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~ 114 (602)
.|.+.++...+|+++++.+ +.++|+||+|||||||++.|+|. .+|++| |.++|.++..- ..
T Consensus 345 ~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~------------~~p~~G~I~i~g~~i~~~~~~~~ 412 (574)
T PRK11160 345 SFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRA------------WDPQQGEILLNGQPIADYSEAAL 412 (574)
T ss_pred EEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCceEEECCEEhhhCCHHHH
Confidence 3444333346899999988 89999999999999999999998 488999 99999887531 23
Q ss_pred CcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccc
Q 007480 115 GSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKL 194 (602)
Q Consensus 115 ~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~f 194 (602)
+..++++.||+.-|. +|++||+.++- ...+++++.+....+++.+.+. . |
T Consensus 413 r~~i~~v~Q~~~lf~----~ti~~Ni~~~~-------------~~~~~~~i~~al~~~~l~~~i~---------~-p--- 462 (574)
T PRK11160 413 RQAISVVSQRVHLFS----ATLRDNLLLAA-------------PNASDEALIEVLQQVGLEKLLE---------D-D--- 462 (574)
T ss_pred HhheeEEcccchhhc----ccHHHHhhcCC-------------CccCHHHHHHHHHHcCCHHHHc---------C-c---
Confidence 567899999987664 48899987631 1234556666666666544331 1 2
Q ss_pred hhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHH
Q 007480 195 VWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVK 274 (602)
Q Consensus 195 lw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e 274 (602)
+|. +..+ .+.-..+|++++++..++ +++. ..|.+ .+.|||++.||++..
T Consensus 463 ---------~Gl------dT~v--------ge~g~~LSgGqrqRialA---Rall-~~~~i---lilDE~ts~lD~~t~- 511 (574)
T PRK11160 463 ---------KGL------NAWL--------GEGGRQLSGGEQRRLGIA---RALL-HDAPL---LLLDEPTEGLDAETE- 511 (574)
T ss_pred ---------ccc------Cchh--------cCCCCCCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCcccCCHHHH-
Confidence 111 0000 122346899999999988 5655 56666 789999999999984
Q ss_pred HHHHHHHHHhhhcCCCccceEeeccHHHHHHHH--HHHHHHcCCCCCCCcchHHH
Q 007480 275 RREQLKKLVASVTRPKIVQGKFLNGNEFVAFME--QILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 275 ~~~~L~~~I~~~~~pK~l~g~~ltG~~l~~lv~--~yv~aINsG~vP~~~sl~e~ 327 (602)
+.+.+.+.+..+.+ .-..+++.. . .+. +.+-.+++|++-..++-.+.
T Consensus 512 --~~i~~~l~~~~~~~--tviiitHr~-~-~~~~~d~i~~l~~G~i~~~g~~~~l 560 (574)
T PRK11160 512 --RQILELLAEHAQNK--TVLMITHRL-T-GLEQFDRICVMDNGQIIEQGTHQEL 560 (574)
T ss_pred --HHHHHHHHHHcCCC--EEEEEecCh-h-HHHhCCEEEEEeCCeEEEeCCHHHH
Confidence 45555665553322 234555543 2 222 22223467877666664443
No 264
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.37 E-value=1.3e-12 Score=131.35 Aligned_cols=200 Identities=16% Similarity=0.198 Sum_probs=121.2
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEEEe
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSVFY 122 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~vvl 122 (602)
..+|+++++.+ ++++|+||||||||||+++|+|. .++++| |++.+.++... .....+++++
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl------------~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~ 81 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRF------------YDVSSGSILIDGQDIREVTLDSLRRAIGVVP 81 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc------------cCCCCCEEEECCEEhhhCCHHHHHhhEEEEC
Confidence 34889999888 89999999999999999999998 488999 99988765421 1234588898
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
+++.-+ ..++.||+.+... + .....+.......++.+.+.. .|
T Consensus 82 q~~~~~----~~tv~~nl~~~~~---------~----~~~~~~~~~~~~~~l~~~~~~---------l~----------- 124 (236)
T cd03253 82 QDTVLF----NDTIGYNIRYGRP---------D----ATDEEVIEAAKAAQIHDKIMR---------FP----------- 124 (236)
T ss_pred CCChhh----cchHHHHHhhcCC---------C----CCHHHHHHHHHHcCcHHHHHh---------cc-----------
Confidence 886433 2477888765321 0 011112222221222111100 00
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~ 282 (602)
.| +. ...++.+..+|++++++..++ .+++ ..|.+ .+.|||++.||+.. .+.+.+.
T Consensus 125 -~~----------~~----~~~~~~~~~LS~G~~~rl~la---~aL~-~~p~l---lllDEP~~~LD~~~---~~~l~~~ 179 (236)
T cd03253 125 -DG----------YD----TIVGERGLKLSGGEKQRVAIA---RAIL-KNPPI---LLLDEATSALDTHT---EREIQAA 179 (236)
T ss_pred -cc----------cc----chhhcCCCcCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCcccCCHHH---HHHHHHH
Confidence 00 00 001234567899999998888 4444 67777 89999999999999 4566666
Q ss_pred HhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHH
Q 007480 283 VASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVE 326 (602)
Q Consensus 283 I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e 326 (602)
+.+..+ ...-..+++.. .... .+.+-.+++|.+...++..+
T Consensus 180 l~~~~~--~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~~~~~~~ 221 (236)
T cd03253 180 LRDVSK--GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEE 221 (236)
T ss_pred HHHhcC--CCEEEEEcCCHHHHHh-CCEEEEEECCEEEeeCCHHH
Confidence 765533 22223444422 2222 34444457787755555433
No 265
>PLN03211 ABC transporter G-25; Provisional
Probab=99.37 E-value=2.1e-12 Score=148.69 Aligned_cols=203 Identities=18% Similarity=0.082 Sum_probs=122.5
Q ss_pred cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCC--Ccc-eEEcCcccCccccCcceEEEe
Q 007480 49 GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTK--TKG-IWVWGNPVEMEIDGSRTSVFY 122 (602)
Q Consensus 49 al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~--TkG-Iwi~~~~~~~~~~~~~~~vvl 122 (602)
...+|+++++.+ ++++|+||||||||||||+|+|.. ++ ++| |.+.|++.... ....++++.
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~------------~~~~~sG~I~inG~~~~~~-~~~~i~yv~ 146 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRI------------QGNNFTGTILANNRKPTKQ-ILKRTGFVT 146 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCC------------CCCceeEEEEECCEECchh-hccceEEEC
Confidence 456899999888 899999999999999999999973 44 489 99999876432 235689999
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
||...+. ..|++|++.|+....+.. .......++.++++...++|.+...
T Consensus 147 Q~~~l~~---~lTV~E~l~~~a~~~~~~----~~~~~~~~~~v~~~l~~lgL~~~~~----------------------- 196 (659)
T PLN03211 147 QDDILYP---HLTVRETLVFCSLLRLPK----SLTKQEKILVAESVISELGLTKCEN----------------------- 196 (659)
T ss_pred cccccCC---cCCHHHHHHHHHHhCCCC----CCCHHHHHHHHHHHHHHcCChhhcC-----------------------
Confidence 9875443 569999998864321000 0000111122222222222211000
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~ 282 (602)
..-+++....+|++++++..++ +..+..|.+ .+.|||+++||+... .++.+.
T Consensus 197 ------------------t~vg~~~~~~LSgGerqRv~ia----~aL~~~P~i---LlLDEPtsgLD~~~~---~~l~~~ 248 (659)
T PLN03211 197 ------------------TIIGNSFIRGISGGERKRVSIA----HEMLINPSL---LILDEPTSGLDATAA---YRLVLT 248 (659)
T ss_pred ------------------ceeCCCCCCCcChhhhhHHHHH----HHHHhCCCE---EEEeCCCCCcCHHHH---HHHHHH
Confidence 0001234567899999988888 334467777 899999999999994 455555
Q ss_pred HhhhcCCCccceEeeccHHHH---HHHHHHHHHHcCCCCCCCcch
Q 007480 283 VASVTRPKIVQGKFLNGNEFV---AFMEQILEALNKGEIPSTGSL 324 (602)
Q Consensus 283 I~~~~~pK~l~g~~ltG~~l~---~lv~~yv~aINsG~vP~~~sl 324 (602)
+.++.+ +...-..+++ +.. .-+.+.+-.+++|++-..++.
T Consensus 249 L~~l~~-~g~TvI~~sH-~~~~~i~~~~D~iilL~~G~iv~~G~~ 291 (659)
T PLN03211 249 LGSLAQ-KGKTIVTSMH-QPSSRVYQMFDSVLVLSEGRCLFFGKG 291 (659)
T ss_pred HHHHHh-CCCEEEEEec-CCCHHHHHhhceEEEecCCcEEEECCH
Confidence 555433 2222223333 221 122334444567766554443
No 266
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.36 E-value=1.5e-12 Score=131.23 Aligned_cols=198 Identities=14% Similarity=0.145 Sum_probs=121.5
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEEEe
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSVFY 122 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~vvl 122 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|. .++++| |++.+.++... ..+..+++++
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF------------YVPENGRVLVDGHDLALADPAWLRRQVGVVL 82 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------cCCCCCEEEECCeehHhcCHHHHhhcEEEEc
Confidence 45889999888 89999999999999999999998 478999 99998765421 1235689999
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
++..-+ ..++.||+.+... + .....+.......++.+
T Consensus 83 q~~~~~----~~tv~~nl~~~~~---------~----~~~~~~~~~~~~~~~~~-------------------------- 119 (237)
T cd03252 83 QENVLF----NRSIRDNIALADP---------G----MSMERVIEAAKLAGAHD-------------------------- 119 (237)
T ss_pred CCchhc----cchHHHHhhccCC---------C----CCHHHHHHHHHHcCcHH--------------------------
Confidence 886433 2478888755210 0 01111111111111111
Q ss_pred CCcccHHHHHHHHHHhCCC---CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPN---DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQL 279 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~---~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L 279 (602)
.+...+. ...++.+.++|+++++...++ .+++ ..|.+ .+.|||++.||+... +.+
T Consensus 120 ------------~l~~l~~~~~~~~~~~~~~LSgG~~qrv~la---ral~-~~p~l---lllDEP~~~LD~~~~---~~l 177 (237)
T cd03252 120 ------------FISELPEGYDTIVGEQGAGLSGGQRQRIAIA---RALI-HNPRI---LIFDEATSALDYESE---HAI 177 (237)
T ss_pred ------------HHHhCcccccchhhcCCCcCCHHHHHHHHHH---HHHh-hCCCE---EEEeCCcccCCHHHH---HHH
Confidence 1111100 001345678999999999888 4444 67777 899999999999994 456
Q ss_pred HHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 280 KKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 280 ~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
.+.+.+..+ ...-..+++. ..... .+.+-.+++|.+-..++..+.
T Consensus 178 ~~~l~~~~~--~~tiii~sH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~ 223 (237)
T cd03252 178 MRNMHDICA--GRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDEL 223 (237)
T ss_pred HHHHHHhcC--CCEEEEEeCCHHHHHh-CCEEEEEECCEEEEEcCHHHH
Confidence 666665532 2222344442 22222 344455577877544444443
No 267
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.36 E-value=9.9e-13 Score=127.60 Aligned_cols=225 Identities=17% Similarity=0.211 Sum_probs=156.5
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcC-
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWG- 106 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~- 106 (602)
++++.++ +++.-+...+|+++++.+ +.-+|+||||+||||+|..|.|. -+|+.| +.+.+
T Consensus 4 ~iL~~~~----vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGK------------trp~~G~v~f~g~ 67 (249)
T COG4674 4 IILYLDG----VSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGK------------TRPQEGEVLFDGD 67 (249)
T ss_pred ceEEEec----eEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeeccc------------CCCCcceEEEcCc
Confidence 4566665 455557888999999887 89999999999999999999998 488999 88888
Q ss_pred cccCccc----cCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhccc
Q 007480 107 NPVEMEI----DGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRV 182 (602)
Q Consensus 107 ~~~~~~~----~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~ 182 (602)
.++.... .+..++-=||-+.-|. ..++.||+..+...
T Consensus 68 ~dl~~~~e~~IAr~GIGRKFQ~PtVfe---~ltV~eNLelA~~~------------------------------------ 108 (249)
T COG4674 68 TDLTKLPEHRIARAGIGRKFQKPTVFE---NLTVRENLELALNR------------------------------------ 108 (249)
T ss_pred hhhccCCHHHHHHhccCccccCCeehh---hccHHHHHHHHhcC------------------------------------
Confidence 5554311 2334555666655453 56888888765422
Q ss_pred CCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccC
Q 007480 183 KGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLC 261 (602)
Q Consensus 183 ~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~ 261 (602)
+. -+|-..+-= ...++...+++.|...+. +..+.....+|.+++|...+. ..+...|.+ .|.
T Consensus 109 ---~k------~v~a~L~~r-~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIG----Mll~Q~P~l---LLl 171 (249)
T COG4674 109 ---DK------SVFASLFAR-LRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIG----MLLAQDPKL---LLL 171 (249)
T ss_pred ---Cc------chHHHhhhh-cChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhh----eeeccCCcE---EEe
Confidence 11 122111100 012455678888888775 334566778999999998887 777799998 899
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeecc-HHHHHHHHHHHHHHcCCCCCCCcchHHHHhHHHH
Q 007480 262 DMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNG-NEFVAFMEQILEALNKGEIPSTGSLVEVFNKGIL 333 (602)
Q Consensus 262 d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG-~~l~~lv~~yv~aINsG~vP~~~sl~e~~n~~av 333 (602)
|+|..++..+-.++..+| +.+++.... -..+.+ -.|...+..+|..++.|++-|.+|+.++.++.-|
T Consensus 172 DEPvAGMTd~Et~~taeL---l~~la~~hs--ilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~dp~V 239 (249)
T COG4674 172 DEPVAGMTDAETEKTAEL---LKSLAGKHS--ILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDPKV 239 (249)
T ss_pred cCccCCCcHHHHHHHHHH---HHHHhcCce--EEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcCcce
Confidence 999999988775444444 444433222 234555 4477777788889999999999999998765433
No 268
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.36 E-value=2.3e-12 Score=144.65 Aligned_cols=176 Identities=20% Similarity=0.181 Sum_probs=121.1
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEEEe
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSVFY 122 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~vvl 122 (602)
..+|+++++.+ +.++|+|++|||||||+|.|+|. .++++| |.+.+.++..- ..++.++++.
T Consensus 335 ~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~------------~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~ 402 (529)
T TIGR02857 335 APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGF------------VDPTEGSIAVNGVPLADADADSWRDQIAWVP 402 (529)
T ss_pred cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCcEEEECCEehhhCCHHHHHhheEEEc
Confidence 46899999988 99999999999999999999998 589999 99999887531 2356799999
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
||+..+. +|++||+.++. ...+++++.+....+++.+.+.. .|
T Consensus 403 Q~~~lf~----~ti~~Ni~~~~-------------~~~~~~~i~~a~~~~~l~~~i~~---------lp----------- 445 (529)
T TIGR02857 403 QHPFLFA----GTIAENIRLAR-------------PDASDAEIRRALERAGLDEFVAA---------LP----------- 445 (529)
T ss_pred CCCcccC----cCHHHHHhccC-------------CCCCHHHHHHHHHHcCcHHHHHh---------Cc-----------
Confidence 9987764 58999987632 12234555555555555443311 12
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~ 282 (602)
+|. +..+ .+.-..+|+|++|+..++ +++. ..|.+ .+.|||++.||++..+ .+.+.
T Consensus 446 -~Gl------dt~v--------~e~g~~LSgGq~qri~la---Ral~-~~~~i---lilDE~ts~lD~~~~~---~i~~~ 500 (529)
T TIGR02857 446 -QGL------DTLI--------GEGGAGLSGGQAQRLALA---RAFL-RDAPL---LLLDEPTAHLDAETEA---LVTEA 500 (529)
T ss_pred -ccc------cchh--------ccccccCCHHHHHHHHHH---HHHh-cCCCE---EEEeCcccccCHHHHH---HHHHH
Confidence 121 0011 112346899999999998 6665 56666 7899999999999854 45555
Q ss_pred HhhhcCCCccceEeeccHH
Q 007480 283 VASVTRPKIVQGKFLNGNE 301 (602)
Q Consensus 283 I~~~~~pK~l~g~~ltG~~ 301 (602)
+.+..+ ...-..+++..
T Consensus 501 l~~~~~--~~t~i~itH~~ 517 (529)
T TIGR02857 501 LRALAQ--GRTVLLVTHRL 517 (529)
T ss_pred HHHhcC--CCEEEEEecCH
Confidence 555432 22335666643
No 269
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.36 E-value=1.4e-12 Score=130.59 Aligned_cols=197 Identities=17% Similarity=0.217 Sum_probs=119.5
Q ss_pred cccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEEEee
Q 007480 51 ETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSVFYL 123 (602)
Q Consensus 51 ~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~vvl~ 123 (602)
.+|+++++.+ ++++|+|||||||||||++|+|. .++++| |++.+.++... ..+..++++++
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 84 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRF------------YDPQKGQILIDGIDIRDISRKSLRSMIGVVLQ 84 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------cCCCCCEEEECCEeHHHcCHHHHhhhEEEecC
Confidence 4899999888 89999999999999999999998 488999 99998765321 12356889988
Q ss_pred ccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccC
Q 007480 124 DTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFL 203 (602)
Q Consensus 124 DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~ 203 (602)
+..-+. .++.|++.+... + .....+......+++.+.+.. .|
T Consensus 85 ~~~~~~----~tv~~~~~~~~~---------~----~~~~~~~~~~~~~~l~~~~~~---------~~------------ 126 (229)
T cd03254 85 DTFLFS----GTIMENIRLGRP---------N----ATDEEVIEAAKEAGAHDFIMK---------LP------------ 126 (229)
T ss_pred Cchhhh----hHHHHHHhccCC---------C----CCHHHHHHHHHHhChHHHHHh---------Cc------------
Confidence 864332 367777654210 0 011122222222222111100 00
Q ss_pred CcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHH
Q 007480 204 QGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLV 283 (602)
Q Consensus 204 ~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I 283 (602)
.|. + ...++.+.++|++++++..++ .+++ ..|.+ .+.|||+++||+.. .+.+.+.+
T Consensus 127 ~~~------~--------~~~~~~~~~LS~G~~~rv~la---~al~-~~p~l---lllDEP~~~LD~~~---~~~l~~~l 182 (229)
T cd03254 127 NGY------D--------TVLGENGGNLSQGERQLLAIA---RAML-RDPKI---LILDEATSNIDTET---EKLIQEAL 182 (229)
T ss_pred ccc------c--------CHhhcCCCcCCHHHHHHHHHH---HHHh-cCCCE---EEEeCccccCCHHH---HHHHHHHH
Confidence 000 0 001234678999999998888 4444 67777 89999999999998 45666666
Q ss_pred hhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcch
Q 007480 284 ASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSL 324 (602)
Q Consensus 284 ~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl 324 (602)
.+.. +...-..+++.. .... .+.+-.+++|.+...++.
T Consensus 183 ~~~~--~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~~ 221 (229)
T cd03254 183 EKLM--KGRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTH 221 (229)
T ss_pred HHhc--CCCEEEEEecCHHHHhh-CCEEEEEeCCeEEEeCCH
Confidence 6553 222233444432 2222 344445577877554443
No 270
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.36 E-value=9e-13 Score=131.84 Aligned_cols=178 Identities=14% Similarity=0.171 Sum_probs=111.3
Q ss_pred ccEEeeCCCcceEEeccc-cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEc
Q 007480 31 FPIVEPDPGHTKLRLSRE-GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVW 105 (602)
Q Consensus 31 iplv~~d~~~~~l~~~~e-al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~ 105 (602)
-+++..++.+ +.+... ...+|+++++.+ ++++|+||||||||||+++|+|. .+++.| |.+.
T Consensus 9 ~~~l~~~~l~--~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~ 74 (226)
T cd03248 9 KGIVKFQNVT--FAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF------------YQPQGGQVLLD 74 (226)
T ss_pred CceEEEEEEE--EEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------cCCCCcEEEEC
Confidence 3456665443 333221 235899999988 89999999999999999999998 488999 9999
Q ss_pred CcccCcc---ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhccc
Q 007480 106 GNPVEME---IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRV 182 (602)
Q Consensus 106 ~~~~~~~---~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~ 182 (602)
+.++... ..+..+++++++..-+ ..++.||+.++... . ....+.....
T Consensus 75 g~~~~~~~~~~~~~~i~~~~q~~~l~----~~tv~~nl~~~~~~---------~----~~~~~~~~~~------------ 125 (226)
T cd03248 75 GKPISQYEHKYLHSKVSLVGQEPVLF----ARSLQDNIAYGLQS---------C----SFECVKEAAQ------------ 125 (226)
T ss_pred CCchHHcCHHHHHhhEEEEecccHHH----hhhHHHHhccccCC---------C----CHHHHHHHHH------------
Confidence 8765321 1235688998876432 23677776543210 0 0000000000
Q ss_pred CCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCC--C-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcc
Q 007480 183 KGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVP--N-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTK 259 (602)
Q Consensus 183 ~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~--~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~ 259 (602)
...+++.++..+ . ...++.+.++|+++++...++ .+++ .+|.+ .
T Consensus 126 --------------------------~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~la---ral~-~~p~l---l 172 (226)
T cd03248 126 --------------------------KAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIA---RALI-RNPQV---L 172 (226)
T ss_pred --------------------------HcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHH---HHHh-cCCCE---E
Confidence 000111111111 0 111345678999999998888 5554 67777 7
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 007480 260 LCDMKDEELDPIYVKRREQLKKLVASVT 287 (602)
Q Consensus 260 L~d~p~~~Ld~~F~e~~~~L~~~I~~~~ 287 (602)
+.|||++.||+.. .+.+.+.+.+..
T Consensus 173 llDEPt~~LD~~~---~~~l~~~l~~~~ 197 (226)
T cd03248 173 ILDEATSALDAES---EQQVQQALYDWP 197 (226)
T ss_pred EEeCCcccCCHHH---HHHHHHHHHHHc
Confidence 9999999999999 456666666653
No 271
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.35 E-value=8.1e-13 Score=153.62 Aligned_cols=200 Identities=15% Similarity=0.175 Sum_probs=131.4
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc---cccCcceEEEe
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM---EIDGSRTSVFY 122 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~---~~~~~~~~vvl 122 (602)
..+|+++|+.+ +.++|+||+|||||||+|.|+|. .+|++| |.++|.|+.. ...++.++++.
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl------------~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 561 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL------------YQPTGGQVLLDGVPLVQYDHHYLHRQVALVG 561 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhc------------cCCCCCEEEECCEEHHhcCHHHHHhhceEEe
Confidence 56899999988 99999999999999999999998 489999 9999998753 12356899999
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
||+.-|. +|++||+.++. ...+++++.+....+++.+.+.. .|
T Consensus 562 Q~~~lF~----gTIreNI~~g~-------------~~~~~e~i~~al~~a~l~~~i~~---------lp----------- 604 (711)
T TIGR00958 562 QEPVLFS----GSVRENIAYGL-------------TDTPDEEIMAAAKAANAHDFIME---------FP----------- 604 (711)
T ss_pred cCccccc----cCHHHHHhcCC-------------CCCCHHHHHHHHHHcCCHHHHHh---------CC-----------
Confidence 9998774 58999997632 12334556665555555443311 12
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~ 282 (602)
+|. +..- ++.-..+|+|++|+.+++ +++. ..|.+ .+.|||++.||++..+.+.+
T Consensus 605 -~Gl----------dT~i----ge~G~~LSGGQkQRlalA---RALl-~~p~I---LILDEpTSaLD~~te~~i~~---- 658 (711)
T TIGR00958 605 -NGY----------DTEV----GEKGSQLSGGQKQRIAIA---RALV-RKPRV---LILDEATSALDAECEQLLQE---- 658 (711)
T ss_pred -Ccc----------CCcc----cCCCCcCCHHHHHHHHHH---HHHh-cCCCE---EEEEccccccCHHHHHHHHH----
Confidence 110 0000 112246899999999998 6665 66666 78999999999987443333
Q ss_pred HhhhcCCCccceEeeccHHHHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 283 VASVTRPKIVQGKFLNGNEFVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 283 I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
. ... +...-..++++.-.--..+.+-.+++|.+-..++-.+.
T Consensus 659 ~-~~~--~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL 700 (711)
T TIGR00958 659 S-RSR--ASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQL 700 (711)
T ss_pred h-hcc--CCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHH
Confidence 1 111 22234566665311111223334577887666664443
No 272
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.35 E-value=1e-12 Score=132.50 Aligned_cols=197 Identities=12% Similarity=0.152 Sum_probs=119.5
Q ss_pred cccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEEEee
Q 007480 51 ETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSVFYL 123 (602)
Q Consensus 51 ~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~vvl~ 123 (602)
.+|+++++.+ ++++|+|+||||||||+++|+|. .++++| |.+.+.++... .....++++++
T Consensus 17 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 84 (238)
T cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERF------------YDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQ 84 (238)
T ss_pred cceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhcc------------CCCCCCEEEECCEehhhcCHHHHHhhEEEECC
Confidence 4889999888 99999999999999999999998 488999 99998765321 11346889988
Q ss_pred ccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccC
Q 007480 124 DTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFL 203 (602)
Q Consensus 124 DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~ 203 (602)
+...+ ..++.|++.+.... . ....+.......++.+..
T Consensus 85 ~~~~~----~~tv~e~l~~~~~~-----------~--~~~~~~~~~~~~~~~~~~------------------------- 122 (238)
T cd03249 85 EPVLF----DGTIAENIRYGKPD-----------A--TDEEVEEAAKKANIHDFI------------------------- 122 (238)
T ss_pred chhhh----hhhHHHHhhccCCC-----------C--CHHHHHHHHHHcChHHHH-------------------------
Confidence 86433 23777776543210 0 011111111111111100
Q ss_pred CcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHH
Q 007480 204 QGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLV 283 (602)
Q Consensus 204 ~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I 283 (602)
+..-.... ...++.+.++|++++++..++ .+.+ ..|.+ .+.|||+++||+.. .+.+.+.+
T Consensus 123 ---------~~l~~~~~-~~~~~~~~~LS~G~~qrv~la---~al~-~~p~l---lllDEP~~gLD~~~---~~~l~~~l 182 (238)
T cd03249 123 ---------MSLPDGYD-TLVGERGSQLSGGQKQRIAIA---RALL-RNPKI---LLLDEATSALDAES---EKLVQEAL 182 (238)
T ss_pred ---------Hhhccccc-eeeccCCccCCHHHHHHHHHH---HHHh-cCCCE---EEEeCccccCCHHH---HHHHHHHH
Confidence 00000000 001345678999999998887 4444 67777 78999999999999 45666666
Q ss_pred hhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcch
Q 007480 284 ASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSL 324 (602)
Q Consensus 284 ~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl 324 (602)
.+.. +...-..+++. .... ..+.+-.+++|.+-..++.
T Consensus 183 ~~~~--~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~~~ 221 (238)
T cd03249 183 DRAM--KGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGTH 221 (238)
T ss_pred HHhc--CCCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeCCH
Confidence 6553 22222344442 2333 3445555588877544443
No 273
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.35 E-value=1.4e-12 Score=151.31 Aligned_cols=210 Identities=17% Similarity=0.180 Sum_probs=138.1
Q ss_pred eEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---cc
Q 007480 42 KLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---ID 114 (602)
Q Consensus 42 ~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~ 114 (602)
.|.+.++...+|+++++.+ +.++|+|++|||||||++.|+|. .+|++| |.++|.++..- ..
T Consensus 462 sf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~------------~~p~~G~I~idg~~i~~~~~~~~ 529 (694)
T TIGR01846 462 RFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRL------------YTPQHGQVLVDGVDLAIADPAWL 529 (694)
T ss_pred EEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCceEEECCEehhhCCHHHH
Confidence 3554444456899999888 89999999999999999999998 488999 99999887531 23
Q ss_pred CcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccc
Q 007480 115 GSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKL 194 (602)
Q Consensus 115 ~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~f 194 (602)
+..++++.||+.-+. +|++||+.++ + ...+++++.+.....++.+.+.. .|
T Consensus 530 r~~i~~v~q~~~lf~----~ti~eNi~~~-----------~--~~~~~~~i~~a~~~~~l~~~i~~---------lp--- 580 (694)
T TIGR01846 530 RRQMGVVLQENVLFS----RSIRDNIALC-----------N--PGAPFEHVIHAAKLAGAHDFISE---------LP--- 580 (694)
T ss_pred HHhCeEEccCCeehh----hhHHHHHhcC-----------C--CCCCHHHHHHHHHHcChHHHHHh---------Cc---
Confidence 567899999987764 4889998652 1 12345556655555555443321 12
Q ss_pred hhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHH
Q 007480 195 VWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVK 274 (602)
Q Consensus 195 lw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e 274 (602)
+|. +..- ++.-..+|+|++++..++ +++. ..|.+ .+.|||++.||++..
T Consensus 581 ---------~gl----------~t~i----~~~g~~LSgGq~qri~lA---Rall-~~~~i---lilDEpts~LD~~~~- 629 (694)
T TIGR01846 581 ---------QGY----------NTEV----GEKGANLSGGQRQRIAIA---RALV-GNPRI---LIFDEATSALDYESE- 629 (694)
T ss_pred ---------Ccc----------CcEe----cCCCCCCCHHHHHHHHHH---HHHH-hCCCE---EEEECCCcCCCHHHH-
Confidence 111 0000 122356899999999988 6664 67777 789999999999984
Q ss_pred HHHHHHHHHhhhcCCCccceEeeccHHHHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 275 RREQLKKLVASVTRPKIVQGKFLNGNEFVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 275 ~~~~L~~~I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
+++.+.+.+..+.+ .-..++++.-.--..+.+-.+++|.+-..++-.+.
T Consensus 630 --~~i~~~l~~~~~~~--t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l 678 (694)
T TIGR01846 630 --ALIMRNMREICRGR--TVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEEL 678 (694)
T ss_pred --HHHHHHHHHHhCCC--EEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 45666665553222 33566664311111233444577877666654443
No 274
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=3e-12 Score=130.07 Aligned_cols=202 Identities=18% Similarity=0.252 Sum_probs=121.3
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccC--CCcc-eEEcCcccCcc-----ccCcce
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDT--KTKG-IWVWGNPVEME-----IDGSRT 118 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~--~TkG-Iwi~~~~~~~~-----~~~~~~ 118 (602)
..+|+++++.+ ++++|+|+||+||||||++|+|... ..+ +++| |++.+.++... .....+
T Consensus 16 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---------~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i 86 (250)
T PRK14266 16 AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMND---------LIPGFRHEGHIYLDGVDIYDPAVDVVELRKKV 86 (250)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhc---------cCCCCCCccEEEECCEEcccccccHHHHhhhe
Confidence 45899999888 8999999999999999999999720 002 4789 99999876421 123568
Q ss_pred EEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccc-hhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhh
Q 007480 119 SVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLP-ETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWL 197 (602)
Q Consensus 119 ~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~-~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~ 197 (602)
++++++..-+. .++.||+.++... ++.. ....++.+.++...+++.+.
T Consensus 87 ~~~~q~~~~~~----~t~~~nl~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~~-------------------- 135 (250)
T PRK14266 87 GMVFQKPNPFP----KSIFDNVAYGLRI-------HGEDDEDFIEERVEESLKAAALWDE-------------------- 135 (250)
T ss_pred EEEecCCccCc----chHHHHHHhHHhh-------cCCCCHHHHHHHHHHHHHHcCCchh--------------------
Confidence 99998864332 3788887765321 1110 01111122222222111100
Q ss_pred hhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHH
Q 007480 198 IQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRRE 277 (602)
Q Consensus 198 vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~ 277 (602)
++..+ ++.+.++|+++++...++ .+++ .+|.+ .+.|+|+++||+... .
T Consensus 136 --------------l~~~~--------~~~~~~LS~Gq~qrv~la---ral~-~~p~l---lllDEP~~gLD~~~~---~ 183 (250)
T PRK14266 136 --------------VKDKL--------DKSALGLSGGQQQRLCIA---RTIA-VSPEV---ILMDEPCSALDPIST---T 183 (250)
T ss_pred --------------HHHHH--------hCCcccCCHHHHHHHHHH---HHHH-cCCCE---EEEcCCCccCCHHHH---H
Confidence 01111 244668899999988887 4444 67777 899999999999984 4
Q ss_pred HHHHHHhhhcCCCccceEeeccHHHHHHHHHHHH---HHcCCCCCCCcchHHH
Q 007480 278 QLKKLVASVTRPKIVQGKFLNGNEFVAFMEQILE---ALNKGEIPSTGSLVEV 327 (602)
Q Consensus 278 ~L~~~I~~~~~pK~l~g~~ltG~~l~~lv~~yv~---aINsG~vP~~~sl~e~ 327 (602)
.+.+.+.+..+ ...-..+++ .+. .+..+.+ .+++|.+-..++..+.
T Consensus 184 ~l~~~l~~~~~--~~tiii~sh-~~~-~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 184 KIEDLIHKLKE--DYTIVIVTH-NMQ-QATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHhc--CCeEEEEEC-CHH-HHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 56666665532 222234444 332 2233333 4578877555554443
No 275
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=4.2e-12 Score=130.40 Aligned_cols=202 Identities=18% Similarity=0.254 Sum_probs=123.5
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccC----CCcc-eEEcCcccCc---c--ccCc
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDT----KTKG-IWVWGNPVEM---E--IDGS 116 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~----~TkG-Iwi~~~~~~~---~--~~~~ 116 (602)
..+|+++++.+ ++++|+|+||+|||||+++|+|.. .+ +++| |++.+.++.. . ....
T Consensus 21 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 89 (261)
T PRK14263 21 FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMN-----------DLVKGFRFEGHVHFLGQDVYGKGVDPVVVRR 89 (261)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHccc-----------ccccCCCCceEEEECCEeccccccchHhhhh
Confidence 45899999988 899999999999999999999984 12 3789 9999987642 1 1235
Q ss_pred ceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchh
Q 007480 117 RTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVW 196 (602)
Q Consensus 117 ~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw 196 (602)
.+++++++...+ ..++.||+.++... +... ....+.+.++...+++.+.+
T Consensus 90 ~i~~v~q~~~~~----~~tv~enl~~~~~~-------~~~~-~~~~~~~~~~l~~~~l~~~i------------------ 139 (261)
T PRK14263 90 YIGMVFQQPNPF----SMSIFDNVAFGLRL-------NRYK-GDLGDRVKHALQGAALWDEV------------------ 139 (261)
T ss_pred ceEEEecCCccc----cccHHHHHHHHHhh-------cCch-HHHHHHHHHHHHHcCCchhh------------------
Confidence 689999986433 36888998776432 1110 01111222222222211000
Q ss_pred hhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHH
Q 007480 197 LIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRR 276 (602)
Q Consensus 197 ~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~ 276 (602)
...+ ++...++++++++...++ +++ +.+|.+ .+.|||+++||+.. .
T Consensus 140 ----------------~~~~--------~~~~~~LS~G~~qrv~la---ral-~~~p~l---lllDEPtsgLD~~~---~ 185 (261)
T PRK14263 140 ----------------KDKL--------KVSGLSLSGGQQQRLCIA---RAI-ATEPEV---LLLDEPCSALDPIA---T 185 (261)
T ss_pred ----------------hhhh--------hCCcccCCHHHHHHHHHH---HHH-HcCCCE---EEEeCCCccCCHHH---H
Confidence 0000 234567889999888887 444 467877 88999999999999 4
Q ss_pred HHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHc--------CCCCCCCcchHHHH
Q 007480 277 EQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALN--------KGEIPSTGSLVEVF 328 (602)
Q Consensus 277 ~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aIN--------sG~vP~~~sl~e~~ 328 (602)
.++.+.+.+..+ ...-..+++.. ...-+.+.+-.++ .|++-..++..+.+
T Consensus 186 ~~l~~~l~~~~~--~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 186 RRVEELMVELKK--DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred HHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHHHH
Confidence 566666666532 22223444422 2222334444554 67776655554443
No 276
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.34 E-value=1.5e-12 Score=147.46 Aligned_cols=201 Identities=14% Similarity=0.185 Sum_probs=131.9
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEEEe
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSVFY 122 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~vvl 122 (602)
..+|+++++.+ +.++|+|++|||||||++.|+|. .++++| |.+++.++..- ..++.++++.
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl------------~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~ 420 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRF------------YDPQSGRILLDGVDLRQLDPAELRARMALVP 420 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhc------------cCCCCCEEEECCEEHHhcCHHHHHHhceEEc
Confidence 46899999888 99999999999999999999998 488999 99999876531 1246799999
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
||+.-+ .+|++||+.++ + ...+++++.+....+++.+.+.. .|
T Consensus 421 Q~~~lf----~~Ti~~Ni~~~-----------~--~~~~~~~~~~~l~~~~l~~~i~~---------l~----------- 463 (576)
T TIGR02204 421 QDPVLF----AASVMENIRYG-----------R--PDATDEEVEAAARAAHAHEFISA---------LP----------- 463 (576)
T ss_pred cCCccc----cccHHHHHhcC-----------C--CCCCHHHHHHHHHHcCcHHHHHh---------CC-----------
Confidence 998776 45899998652 1 12234556666555555443321 12
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~ 282 (602)
+|.. . .+ .+.-..+|+|++++..++ +++. ..|.+ .+.|||++.||++.. +.+.+.
T Consensus 464 -~gl~------t---~i-----~~~g~~LSgGq~Qrl~la---Ral~-~~~~i---lilDEpts~lD~~~~---~~i~~~ 518 (576)
T TIGR02204 464 -EGYD------T---YL-----GERGVTLSGGQRQRIAIA---RAIL-KDAPI---LLLDEATSALDAESE---QLVQQA 518 (576)
T ss_pred -CCCC------c---ee-----CCCCCcCCHHHHHHHHHH---HHHH-hCCCe---EEEeCcccccCHHHH---HHHHHH
Confidence 1110 0 00 112346899999999888 6655 56666 789999999999984 455555
Q ss_pred HhhhcCCCccceEeeccHHHHHHHHHHHHHHcCCCCCCCcchHH
Q 007480 283 VASVTRPKIVQGKFLNGNEFVAFMEQILEALNKGEIPSTGSLVE 326 (602)
Q Consensus 283 I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aINsG~vP~~~sl~e 326 (602)
+.+..+ ...-..+|+..-.-...+.+-.+++|++-..++..+
T Consensus 519 l~~~~~--~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~ 560 (576)
T TIGR02204 519 LETLMK--GRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAE 560 (576)
T ss_pred HHHHhC--CCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHH
Confidence 655532 223456777542111122233347787766655433
No 277
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=2.5e-12 Score=123.83 Aligned_cols=63 Identities=22% Similarity=0.345 Sum_probs=50.1
Q ss_pred cccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc--ccCcceEEEeec
Q 007480 51 ETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME--IDGSRTSVFYLD 124 (602)
Q Consensus 51 ~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~--~~~~~~~vvl~D 124 (602)
.+|+++++.+ ++++|+|+||||||||++.|+|. .+++.| |++.+.++... ..+..++++++|
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 81 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL------------LKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEE 81 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCCeEEEECCEEcccchHhhhccEEEEecC
Confidence 5899999888 89999999999999999999998 478899 99988765321 113456777766
Q ss_pred c
Q 007480 125 T 125 (602)
Q Consensus 125 t 125 (602)
.
T Consensus 82 ~ 82 (173)
T cd03230 82 P 82 (173)
T ss_pred C
Confidence 4
No 278
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.34 E-value=4.3e-12 Score=128.97 Aligned_cols=204 Identities=15% Similarity=0.121 Sum_probs=120.6
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc--cC--cceEEE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI--DG--SRTSVF 121 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~--~~--~~~~vv 121 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|.. ..+++.| |++.+.++.... .. ..++++
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~----------~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 89 (252)
T CHL00131 20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHP----------AYKILEGDILFKGESILDLEPEERAHLGIFLA 89 (252)
T ss_pred EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCC----------cCcCCCceEEECCEEcccCChhhhheeeEEEE
Confidence 45899999888 899999999999999999999961 0267899 999887764211 11 135677
Q ss_pred eeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhc
Q 007480 122 YLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRD 201 (602)
Q Consensus 122 l~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRD 201 (602)
+++...+. ..++.+++.+.... +... ... .+
T Consensus 90 ~q~~~~~~---~~~~~~~l~~~~~~-------~~~~-------------------------------~~~--------~~ 120 (252)
T CHL00131 90 FQYPIEIP---GVSNADFLRLAYNS-------KRKF-------------------------------QGL--------PE 120 (252)
T ss_pred eccccccc---cccHHHHHHHhhhh-------hhcc-------------------------------ccc--------cc
Confidence 77765432 33555554432210 0000 000 00
Q ss_pred cCCcccHHHHHHHHHHhCCCC--CCCCCch-hhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHH
Q 007480 202 FLQGKSVQEMVHDALQRVPND--KGDKNID-MVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQ 278 (602)
Q Consensus 202 f~~g~t~~eyLe~aL~~~~~~--~~~~~i~-~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~ 278 (602)
. ......+.++++|+.++.. ..++.+. .+|++++++..++ .+ .+.+|.+ .+.|||+++||+... +.
T Consensus 121 ~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la---~a-l~~~p~l---lllDEPt~~LD~~~~---~~ 189 (252)
T CHL00131 121 L-DPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEIL---QM-ALLDSEL---AILDETDSGLDIDAL---KI 189 (252)
T ss_pred c-cHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHH---HH-HHcCCCE---EEEcCCcccCCHHHH---HH
Confidence 0 0001122334445444332 1234454 4999999998887 33 4467877 889999999999994 56
Q ss_pred HHHHHhhhcCCCccceEeeccH-HHHHHH-HHHHHHHcCCCCCCCcch
Q 007480 279 LKKLVASVTRPKIVQGKFLNGN-EFVAFM-EQILEALNKGEIPSTGSL 324 (602)
Q Consensus 279 L~~~I~~~~~pK~l~g~~ltG~-~l~~lv-~~yv~aINsG~vP~~~sl 324 (602)
+.+.+.+..+ +...-..+|+. .+...+ .+.+-.+++|.+...++.
T Consensus 190 l~~~l~~~~~-~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~ 236 (252)
T CHL00131 190 IAEGINKLMT-SENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDA 236 (252)
T ss_pred HHHHHHHHHh-CCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecCh
Confidence 6666665542 22222445553 233222 455556688887554443
No 279
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.34 E-value=2.9e-12 Score=142.69 Aligned_cols=210 Identities=17% Similarity=0.203 Sum_probs=125.2
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCC-Ccc-eEEcC
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTK-TKG-IWVWG 106 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~-TkG-Iwi~~ 106 (602)
|++.+++.+.+| + ...+|+++++.+ ++++|+||||||||||+++|+|. .++ ++| |++.|
T Consensus 259 ~~l~~~~l~~~~--~--~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~------------~~~~~~G~i~~~g 322 (490)
T PRK10938 259 PRIVLNNGVVSY--N--DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGD------------HPQGYSNDLTLFG 322 (490)
T ss_pred ceEEEeceEEEE--C--CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCC------------CCcccCCeEEEec
Confidence 467776654333 2 345899999988 99999999999999999999997 354 689 99988
Q ss_pred cccCcc----ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhccc
Q 007480 107 NPVEME----IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRV 182 (602)
Q Consensus 107 ~~~~~~----~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~ 182 (602)
++.... ..+..+++++++...+.. ...++.++..++... ..-.+
T Consensus 323 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~-~~~~~~~~~~~~~~~---~~~~~---------------------------- 370 (490)
T PRK10938 323 RRRGSGETIWDIKKHIGYVSSSLHLDYR-VSTSVRNVILSGFFD---SIGIY---------------------------- 370 (490)
T ss_pred ccCCCCCCHHHHHhhceEECHHHHhhcc-cCCcHHHHHHhcccc---ccccc----------------------------
Confidence 764211 113467888876422110 012233332221100 00000
Q ss_pred CCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhccc
Q 007480 183 KGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKL 260 (602)
Q Consensus 183 ~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L 260 (602)
+.+ .....+.++++++.++.. ..++.+.++|++++++..++ .++ +..|.+ .+
T Consensus 371 -----------------~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la---~al-~~~p~l---ll 424 (490)
T PRK10938 371 -----------------QAV--SDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIV---RAL-VKHPTL---LI 424 (490)
T ss_pred -----------------cCC--CHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHH---HHH-hcCCCE---EE
Confidence 000 001123344555554432 23567889999999999998 444 477887 89
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHH-HHHHHHHHHcCCCC
Q 007480 261 CDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVA-FMEQILEALNKGEI 318 (602)
Q Consensus 261 ~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~-lv~~yv~aINsG~v 318 (602)
.|||+++||+.. ...+.+.+.+..+.....-..+++.. ++. .+.+.+..+.+|.+
T Consensus 425 LDEPt~gLD~~~---~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i 481 (490)
T PRK10938 425 LDEPLQGLDPLN---RQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDI 481 (490)
T ss_pred EcCccccCCHHH---HHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCce
Confidence 999999999999 45666666665432222234555532 222 23455666677765
No 280
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.33 E-value=5.3e-12 Score=133.67 Aligned_cols=224 Identities=21% Similarity=0.192 Sum_probs=158.8
Q ss_pred cccEEeeCCCcceEEecc-------ccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCC
Q 007480 30 AFPIVEPDPGHTKLRLSR-------EGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKT 99 (602)
Q Consensus 30 ~iplv~~d~~~~~l~~~~-------eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~T 99 (602)
+-+++..++.+-.|.+.. +-..+.+++++.+ +.+||||.+|||||||-..|+++. + .
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~------------~-s 339 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI------------P-S 339 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc------------C-c
Confidence 345666666554555443 2345678888877 999999999999999999999983 4 4
Q ss_pred cc-eEEcCcccCcc------ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHH
Q 007480 100 KG-IWVWGNPVEME------IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAV 172 (602)
Q Consensus 100 kG-Iwi~~~~~~~~------~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~ 172 (602)
+| |++.|+++... ..+.++.+||||+-|.-+ |++++.+.+.-+|.+ +
T Consensus 340 ~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLs-PRmtV~qII~EGL~v-------h------------------ 393 (534)
T COG4172 340 QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLS-PRMTVGQIIEEGLRV-------H------------------ 393 (534)
T ss_pred CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCC-cccCHHHHhhhhhhh-------c------------------
Confidence 58 99999998742 246789999999988543 588887777766654 1
Q ss_pred hhhhhhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEc
Q 007480 173 ELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSL 250 (602)
Q Consensus 173 ~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L 250 (602)
.|. . ...+-++.+..+|+.++.+ ..++++.++|+++++..+++ ++.+
T Consensus 394 -----------------~~~-l---------s~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIA---RAli- 442 (534)
T COG4172 394 -----------------EPK-L---------SAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIA---RALI- 442 (534)
T ss_pred -----------------CCC-C---------CHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHH---HHHh-
Confidence 111 0 1234567788888888762 33688999999999999998 5555
Q ss_pred cCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHHh
Q 007480 251 PQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVFN 329 (602)
Q Consensus 251 ~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~n 329 (602)
-.|.. .++|||++.||-.-..|+-.|.+.+. +...+.=..+++.. ...-++.+|-.+.+|+|...+...+++.
T Consensus 443 LkP~~---i~LDEPTSALD~SVQaQvv~LLr~LQ---~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~ 516 (534)
T COG4172 443 LKPEL---ILLDEPTSALDRSVQAQVLDLLRDLQ---QKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFA 516 (534)
T ss_pred cCCcE---EEecCCchHhhHHHHHHHHHHHHHHH---HHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhc
Confidence 46777 78999999999988666555544443 33444445566532 3344667777788999988887766653
No 281
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.33 E-value=1.2e-11 Score=121.21 Aligned_cols=149 Identities=15% Similarity=0.151 Sum_probs=96.9
Q ss_pred cccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeeccccc
Q 007480 53 IRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLDTEGF 128 (602)
Q Consensus 53 L~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~DteG~ 128 (602)
+.++++.+ ++++|+|+||||||||+++|+|. .++++| |++.+.++... ....++++.++. ++
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~i~~~-~~~~~~~~~~~~-~~ 81 (195)
T PRK13541 16 LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGI------------MQPSSGNIYYKNCNINNI-AKPYCTYIGHNL-GL 81 (195)
T ss_pred EEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcC------------CCCCCcEEEECCcccChh-hhhhEEeccCCc-CC
Confidence 33488877 89999999999999999999998 488999 99998876421 123466776553 22
Q ss_pred cccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCcccH
Q 007480 129 ESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSV 208 (602)
Q Consensus 129 ~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~ 208 (602)
....++.||+.+.... +. .++.+..+...+++.+
T Consensus 82 --~~~~tv~~~l~~~~~~-------~~-----~~~~~~~~l~~~~l~~-------------------------------- 115 (195)
T PRK13541 82 --KLEMTVFENLKFWSEI-------YN-----SAETLYAAIHYFKLHD-------------------------------- 115 (195)
T ss_pred --CccCCHHHHHHHHHHh-------cc-----cHHHHHHHHHHcCCHh--------------------------------
Confidence 2356888887664321 11 1111222211111100
Q ss_pred HHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhh
Q 007480 209 QEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVAS 285 (602)
Q Consensus 209 ~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~ 285 (602)
. .++.+.++|++++++..++ .++ +.+|.+ .+.|||++.||+... +.+.+.+..
T Consensus 116 ------~--------~~~~~~~LS~G~~~rl~la---~al-~~~p~~---lllDEP~~~LD~~~~---~~l~~~l~~ 168 (195)
T PRK13541 116 ------L--------LDEKCYSLSSGMQKIVAIA---RLI-ACQSDL---WLLDEVETNLSKENR---DLLNNLIVM 168 (195)
T ss_pred ------h--------hccChhhCCHHHHHHHHHH---HHH-hcCCCE---EEEeCCcccCCHHHH---HHHHHHHHH
Confidence 0 1234567888888888877 344 367777 889999999999995 455555543
No 282
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.9e-12 Score=141.36 Aligned_cols=209 Identities=19% Similarity=0.167 Sum_probs=145.7
Q ss_pred eEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc---c
Q 007480 42 KLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI---D 114 (602)
Q Consensus 42 ~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~---~ 114 (602)
+|++..+..++|+++|+.+ +-|+|+|++|||||||++.|.|.. ++++| |.+.|.|+..-. .
T Consensus 343 sF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~------------~~~~G~i~~~g~~~~~l~~~~~ 410 (573)
T COG4987 343 SFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW------------DPQQGSITLNGVEIASLDEQAL 410 (573)
T ss_pred eeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc------------CCCCCeeeECCcChhhCChhhH
Confidence 4666666678999999988 999999999999999999999984 89999 999998876421 2
Q ss_pred CcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccc
Q 007480 115 GSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKL 194 (602)
Q Consensus 115 ~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~f 194 (602)
++.++++.|+...|. +|.+||+..+- ...+.+++......++|.+.+... |.
T Consensus 411 ~e~i~vl~Qr~hlF~----~Tlr~NL~lA~-------------~~AsDEel~~aL~qvgL~~l~~~~---------p~-- 462 (573)
T COG4987 411 RETISVLTQRVHLFS----GTLRDNLRLAN-------------PDASDEELWAALQQVGLEKLLESA---------PD-- 462 (573)
T ss_pred HHHHhhhccchHHHH----HHHHHHHhhcC-------------CCCCHHHHHHHHHHcCHHHHHHhC---------hh--
Confidence 457889999888774 48888887632 335566777777778887765321 21
Q ss_pred hhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHH
Q 007480 195 VWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVK 274 (602)
Q Consensus 195 lw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e 274 (602)
| ++..+ ++.=..+|++++++.+++ +.+.=..|. .+.|||+.+|||+.-
T Consensus 463 ----------g------l~t~l--------ge~G~~LSGGE~rRLAlA---R~LL~dapl----~lLDEPTegLD~~TE- 510 (573)
T COG4987 463 ----------G------LNTWL--------GEGGRRLSGGERRRLALA---RALLHDAPL----WLLDEPTEGLDPITE- 510 (573)
T ss_pred ----------h------hhchh--------ccCCCcCCchHHHHHHHH---HHHHcCCCe----EEecCCcccCChhhH-
Confidence 1 11111 112246788998888888 555434555 588999999999984
Q ss_pred HHHHHHHHHhhhcCCCccceEeeccHHHHHHHHHHHHHHcCCCCCCCcchHH
Q 007480 275 RREQLKKLVASVTRPKIVQGKFLNGNEFVAFMEQILEALNKGEIPSTGSLVE 326 (602)
Q Consensus 275 ~~~~L~~~I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aINsG~vP~~~sl~e 326 (602)
.++.+.+++.++-|++ ..+|++.-.--..+.+-.+++|++-..++-.+
T Consensus 511 --~~vL~ll~~~~~~kTl--l~vTHrL~~le~~drIivl~~Gkiie~G~~~~ 558 (573)
T COG4987 511 --RQVLALLFEHAEGKTL--LMVTHRLRGLERMDRIIVLDNGKIIEEGTHAE 558 (573)
T ss_pred --HHHHHHHHHHhcCCeE--EEEecccccHhhcCEEEEEECCeeeecCCHHh
Confidence 4677788888877764 35555433222223334457888766665433
No 283
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.33 E-value=2.1e-12 Score=146.42 Aligned_cols=208 Identities=13% Similarity=0.132 Sum_probs=132.1
Q ss_pred eEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---cc
Q 007480 42 KLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---ID 114 (602)
Q Consensus 42 ~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~ 114 (602)
.|.+..+...+|+++++.+ +.++|+||||||||||++.|+|. .+|++| |.+.+.++... ..
T Consensus 320 ~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~------------~~p~~G~i~~~g~~~~~~~~~~~ 387 (569)
T PRK10789 320 QFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRH------------FDVSEGDIRFHDIPLTKLQLDSW 387 (569)
T ss_pred EEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcc------------cCCCCCEEEECCEEHhhCCHHHH
Confidence 3444433356899999888 99999999999999999999998 488999 99999876431 13
Q ss_pred CcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccc
Q 007480 115 GSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKL 194 (602)
Q Consensus 115 ~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~f 194 (602)
+..++++.||+.-+. +|++||+.++. ...+++++......+++.+.+.. .|
T Consensus 388 ~~~i~~v~q~~~lf~----~ti~~Ni~~~~-------------~~~~~~~~~~~~~~~~l~~~i~~---------lp--- 438 (569)
T PRK10789 388 RSRLAVVSQTPFLFS----DTVANNIALGR-------------PDATQQEIEHVARLASVHDDILR---------LP--- 438 (569)
T ss_pred HhheEEEccCCeecc----ccHHHHHhcCC-------------CCCCHHHHHHHHHHcCCHHHHHh---------Cc---
Confidence 467899999986663 48899986531 11234445544444444332210 11
Q ss_pred hhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHH
Q 007480 195 VWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVK 274 (602)
Q Consensus 195 lw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e 274 (602)
+|. ...- ++....+|+|++++..++ +++. ..|.+ .+.|||++.||++..
T Consensus 439 ---------~gl----------~t~~----~~~g~~LSgGq~qRi~lA---Rall-~~~~i---lllDEpts~LD~~~~- 487 (569)
T PRK10789 439 ---------QGY----------DTEV----GERGVMLSGGQKQRISIA---RALL-LNAEI---LILDDALSAVDGRTE- 487 (569)
T ss_pred ---------Ccc----------ccee----cCCCCcCCHHHHHHHHHH---HHHh-cCCCE---EEEECccccCCHHHH-
Confidence 111 0000 122356899999999888 5555 66766 789999999999984
Q ss_pred HHHHHHHHHhhhcCCCccceEeeccHHHHHHHH--HHHHHHcCCCCCCCcchHHH
Q 007480 275 RREQLKKLVASVTRPKIVQGKFLNGNEFVAFME--QILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 275 ~~~~L~~~I~~~~~pK~l~g~~ltG~~l~~lv~--~yv~aINsG~vP~~~sl~e~ 327 (602)
+.+.+.+.+..+.+ .-..++++. +.++ +.+-.+++|.+-..++..+.
T Consensus 488 --~~i~~~l~~~~~~~--tii~itH~~--~~~~~~d~i~~l~~G~i~~~g~~~~l 536 (569)
T PRK10789 488 --HQILHNLRQWGEGR--TVIISAHRL--SALTEASEILVMQHGHIAQRGNHDQL 536 (569)
T ss_pred --HHHHHHHHHHhCCC--EEEEEecch--hHHHcCCEEEEEeCCEEEEecCHHHH
Confidence 45555665543322 234556543 1222 22233467777665654433
No 284
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.33 E-value=5.2e-12 Score=130.93 Aligned_cols=202 Identities=18% Similarity=0.182 Sum_probs=127.6
Q ss_pred cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEEE
Q 007480 49 GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSVF 121 (602)
Q Consensus 49 al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~vv 121 (602)
...+|+++++.| ++++|+|++|+|||||+++|+|.. + +.| |++.+.++... ..+..++++
T Consensus 16 ~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~------------~-~~G~I~i~g~~i~~~~~~~lr~~i~~v 82 (275)
T cd03289 16 GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL------------N-TEGDIQIDGVSWNSVPLQKWRKAFGVI 82 (275)
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc------------C-CCcEEEECCEEhhhCCHHHHhhhEEEE
Confidence 345899999988 899999999999999999999983 4 789 99999876421 124578999
Q ss_pred eeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhc
Q 007480 122 YLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRD 201 (602)
Q Consensus 122 l~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRD 201 (602)
++++..+. .++.||+.. +. ....+.+.++...+++.+.+.. .|..+ |
T Consensus 83 ~q~~~lf~----~tv~~nl~~-----------~~---~~~~~~~~~~l~~~gL~~~~~~---------~p~~l------~ 129 (275)
T cd03289 83 PQKVFIFS----GTFRKNLDP-----------YG---KWSDEEIWKVAEEVGLKSVIEQ---------FPGQL------D 129 (275)
T ss_pred CCCcccch----hhHHHHhhh-----------cc---CCCHHHHHHHHHHcCCHHHHHh---------Ccccc------c
Confidence 99875542 377887742 11 1123344444444555433211 12100 0
Q ss_pred cCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHH
Q 007480 202 FLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKK 281 (602)
Q Consensus 202 f~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~ 281 (602)
+. + ...-..++++++++..++ ++++ .+|.+ .+.|+|++.||+... ..+.+
T Consensus 130 ~~---------------~-----~~~g~~LS~G~~qrl~La---Rall-~~p~i---lllDEpts~LD~~~~---~~l~~ 179 (275)
T cd03289 130 FV---------------L-----VDGGCVLSHGHKQLMCLA---RSVL-SKAKI---LLLDEPSAHLDPITY---QVIRK 179 (275)
T ss_pred ce---------------e-----cCCCCCCCHHHHHHHHHH---HHHh-cCCCE---EEEECccccCCHHHH---HHHHH
Confidence 00 0 012346888999888887 4544 67777 789999999999984 45566
Q ss_pred HHhhhcCCCccceEeeccHHHHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 282 LVASVTRPKIVQGKFLNGNEFVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 282 ~I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
.|.+... ...-..+++..-.-...+.+-.+++|.+-..+++.+..
T Consensus 180 ~l~~~~~--~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~ 224 (275)
T cd03289 180 TLKQAFA--DCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLL 224 (275)
T ss_pred HHHHhcC--CCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHh
Confidence 6655432 22234555543211224455555788887777766654
No 285
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.32 E-value=7.3e-12 Score=124.72 Aligned_cols=163 Identities=20% Similarity=0.210 Sum_probs=106.4
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEEEe
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSVFY 122 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~vvl 122 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|. .++++| |++.+.++... ..+..+++++
T Consensus 17 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 84 (221)
T cd03244 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRL------------VELSSGSILIDGVDISKIGLHDLRSRISIIP 84 (221)
T ss_pred cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcC------------CCCCCCEEEECCEEhHhCCHHHHhhhEEEEC
Confidence 35899999988 89999999999999999999998 488999 99998765321 1245689999
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
++...+ ..++.||+.+ ++. ...+++......+++.+.+... |
T Consensus 85 q~~~l~----~~tv~enl~~-----------~~~---~~~~~~~~~~~~~~l~~~~~~l---------~----------- 126 (221)
T cd03244 85 QDPVLF----SGTIRSNLDP-----------FGE---YSDEELWQALERVGLKEFVESL---------P----------- 126 (221)
T ss_pred CCCccc----cchHHHHhCc-----------CCC---CCHHHHHHHHHHhCcHHHHHhc---------c-----------
Confidence 887532 2477777542 110 1122233333323332211100 0
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~ 282 (602)
.| ++ ...++.+..+|+++++...++ +++ +..|.+ .+.|||++.||+.. .+.+.+.
T Consensus 127 -~~----------l~----~~~~~~~~~LS~G~~qr~~la---ral-~~~p~l---lllDEP~~~LD~~~---~~~l~~~ 181 (221)
T cd03244 127 -GG----------LD----TVVEEGGENLSVGQRQLLCLA---RAL-LRKSKI---LVLDEATASVDPET---DALIQKT 181 (221)
T ss_pred -cc----------cc----cccccCCCcCCHHHHHHHHHH---HHH-hcCCCE---EEEeCccccCCHHH---HHHHHHH
Confidence 00 00 001235678899999988887 344 467777 88999999999998 4566666
Q ss_pred Hhhhc
Q 007480 283 VASVT 287 (602)
Q Consensus 283 I~~~~ 287 (602)
+.+..
T Consensus 182 l~~~~ 186 (221)
T cd03244 182 IREAF 186 (221)
T ss_pred HHHhc
Confidence 66553
No 286
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.32 E-value=4.1e-12 Score=143.35 Aligned_cols=207 Identities=18% Similarity=0.185 Sum_probs=129.2
Q ss_pred EEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccC
Q 007480 43 LRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDG 115 (602)
Q Consensus 43 l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~ 115 (602)
+.+..+...+|+++++.+ +.++|+||+|||||||++.|+|. .+|++| |.+.|.++..- ..+
T Consensus 324 ~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~------------~~~~~G~i~~~g~~i~~~~~~~~~ 391 (544)
T TIGR01842 324 IVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGI------------WPPTSGSVRLDGADLKQWDRETFG 391 (544)
T ss_pred EEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCEehhhCCHHHHh
Confidence 444333456899999888 89999999999999999999998 489999 99999876531 235
Q ss_pred cceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccch
Q 007480 116 SRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLV 195 (602)
Q Consensus 116 ~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~fl 195 (602)
+.++++.||+.-+. .|++||+.+ ++ ...+++++.+.....++.+.+.. .|
T Consensus 392 ~~i~~v~q~~~lf~----~ti~~Ni~~-----------~~--~~~~~~~~~~~~~~~~~~~~i~~---------l~---- 441 (544)
T TIGR01842 392 KHIGYLPQDVELFP----GTVAENIAR-----------FG--ENADPEKIIEAAKLAGVHELILR---------LP---- 441 (544)
T ss_pred hheEEecCCccccc----ccHHHHHhc-----------cC--CCCCHHHHHHHHHHhChHHHHHh---------Cc----
Confidence 67899999976653 488888863 11 12333444444333333322210 11
Q ss_pred hhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHH
Q 007480 196 WLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKR 275 (602)
Q Consensus 196 w~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~ 275 (602)
+|. ... -++....+|+|++++..++ +++. ..|.+ .+.|||++.||++.
T Consensus 442 --------~gl----------~t~----~~~~g~~LSgGq~qrl~lA---Rall-~~~~i---lilDEpts~LD~~~--- 489 (544)
T TIGR01842 442 --------DGY----------DTV----IGPGGATLSGGQRQRIALA---RALY-GDPKL---VVLDEPNSNLDEEG--- 489 (544)
T ss_pred --------ccc----------ccc----cCCCcCCCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCccccCHHH---
Confidence 110 000 0123457899999999998 5554 66777 78999999999998
Q ss_pred HHHHHHHHhhhcCCCccceEeeccHHHHHHHHHHHHHHcCCCCCCCcch
Q 007480 276 REQLKKLVASVTRPKIVQGKFLNGNEFVAFMEQILEALNKGEIPSTGSL 324 (602)
Q Consensus 276 ~~~L~~~I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aINsG~vP~~~sl 324 (602)
.+.+.+.+.+... +...-..+++..-.--..+.+-.+++|.+-..++.
T Consensus 490 ~~~i~~~l~~~~~-~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~ 537 (544)
T TIGR01842 490 EQALANAIKALKA-RGITVVVITHRPSLLGCVDKILVLQDGRIARFGER 537 (544)
T ss_pred HHHHHHHHHHHhh-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCH
Confidence 4456666655431 12223455554321111222333467776555543
No 287
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=6.9e-12 Score=128.80 Aligned_cols=215 Identities=19% Similarity=0.254 Sum_probs=126.6
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccC----CCcc-eE
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDT----KTKG-IW 103 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~----~TkG-Iw 103 (602)
+.+..++.+.+ +. ...+|+++++.+ ++++|+|+||||||||+++|+|.. .+ ++.| |.
T Consensus 15 ~~l~~~~l~~~--~~--~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~~~~~~~~sG~i~ 79 (265)
T PRK14252 15 QKSEVNKLNFY--YG--GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMH-----------DLYPGNHYEGEII 79 (265)
T ss_pred ceEEEEEEEEE--EC--CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccc-----------CCCCCCCcccEEE
Confidence 45556544332 32 236899999988 899999999999999999999973 11 2789 98
Q ss_pred EcCcccCc---c----ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccch-hhhHHHHHHHHHHHhhh
Q 007480 104 VWGNPVEM---E----IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPE-TIREADISRLSFAVELA 175 (602)
Q Consensus 104 i~~~~~~~---~----~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~-~i~e~~l~~L~~~~~L~ 175 (602)
+.+.++.. . .....+++++++...+. .++.||+.++... +.... ...++.+..+...+++.
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~----~tv~eni~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~ 148 (265)
T PRK14252 80 LHPDNVNILSPEVDPIEVRMRISMVFQKPNPFP----KSIFENVAYGLRI-------RGVKRRSILEERVENALRNAALW 148 (265)
T ss_pred EcCccccccccccCHHHHhccEEEEccCCcCCc----chHHHHHHhHHHH-------cCCChHHHHHHHHHHHHHHcCCc
Confidence 88765431 0 12346889988764332 3788888765421 11100 00111122221111110
Q ss_pred hhhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccc
Q 007480 176 EEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHL 255 (602)
Q Consensus 176 ~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~ 255 (602)
+ .+...+ ++.+.++|+++++...++ +++. .+|.+
T Consensus 149 ~----------------------------------~l~~~~--------~~~~~~LS~G~~qrv~la---ral~-~~p~l 182 (265)
T PRK14252 149 D----------------------------------EVKDRL--------GDLAFNLSGGQQQRLCIA---RALA-TDPEI 182 (265)
T ss_pred h----------------------------------hhhHHH--------hCCcccCCHHHHHHHHHH---HHHH-cCCCE
Confidence 0 000111 244567889998888887 4444 57777
Q ss_pred hhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHH
Q 007480 256 LRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVE 326 (602)
Q Consensus 256 ~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e 326 (602)
.+.|||+++||+... +.+.+.+.+..+ ...-..+++.. ...-+.+.+-.+++|.+-..++..+
T Consensus 183 ---lllDEPt~gLD~~~~---~~l~~~l~~l~~--~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 246 (265)
T PRK14252 183 ---LLFDEPTSALDPIAT---ASIEELISDLKN--KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDT 246 (265)
T ss_pred ---EEEeCCCccCCHHHH---HHHHHHHHHHHh--CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 789999999999984 456666665532 22233454432 2222344555568888755554433
No 288
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.31 E-value=3.4e-12 Score=142.24 Aligned_cols=211 Identities=11% Similarity=0.114 Sum_probs=127.4
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGN 107 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~ 107 (602)
+++.+++.+.+ ...+|+++++.+ ++++|+||||||||||++.|+|. .++++| |++.+.
T Consensus 249 ~~i~~~~l~~~------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~ 310 (491)
T PRK10982 249 VILEVRNLTSL------RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGI------------REKSAGTITLHGK 310 (491)
T ss_pred cEEEEeCcccc------cCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCC------------CcCCccEEEECCE
Confidence 35666554322 124899999888 89999999999999999999998 478999 999887
Q ss_pred ccCccc----cCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccC
Q 007480 108 PVEMEI----DGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVK 183 (602)
Q Consensus 108 ~~~~~~----~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~ 183 (602)
++.... ....++++.++....+.++..++.++..+..... ..+.
T Consensus 311 ~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--------------------------- 358 (491)
T PRK10982 311 KINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRN-----YKNK--------------------------- 358 (491)
T ss_pred ECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhh-----hccc---------------------------
Confidence 664211 1234788888753222223445544432210000 0000
Q ss_pred CcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC--CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccC
Q 007480 184 GQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN--DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLC 261 (602)
Q Consensus 184 ~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~--~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~ 261 (602)
+.+ .......+.+++.++.++. ...++.+.++|++++++..++ .++ +..|.+ .++
T Consensus 359 ----------~~~------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la---~al-~~~p~i---llL 415 (491)
T PRK10982 359 ----------VGL------LDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIG---RWL-LTQPEI---LML 415 (491)
T ss_pred ----------ccc------cCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHH---HHH-hcCCCE---EEE
Confidence 000 0000112233344444332 123677889999999999998 444 478887 899
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCC
Q 007480 262 DMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIP 319 (602)
Q Consensus 262 d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP 319 (602)
|||+++||+... +.+.+.+.++.+ +...-..+++. .++.-+.+++-.+.+|.+-
T Consensus 416 DEPt~gLD~~~~---~~~~~~l~~l~~-~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 416 DEPTRGIDVGAK---FEIYQLIAELAK-KDKGIIIISSEMPELLGITDRILVMSNGLVA 470 (491)
T ss_pred cCCCcccChhHH---HHHHHHHHHHHH-CCCEEEEECCChHHHHhhCCEEEEEECCEEE
Confidence 999999999995 455556655432 23333456663 3333444556666777653
No 289
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.31 E-value=8e-12 Score=128.73 Aligned_cols=187 Identities=15% Similarity=0.127 Sum_probs=110.4
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeecc
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLDT 125 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~Dt 125 (602)
..+|+++++.+ ++++|+||||||||||+++|+|. .+++.| |.+.+.. +++.++
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl------------~~p~~G~I~~~g~~----------~~~~~~- 93 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGS------------LSPTVGKVDRNGEV----------SVIAIS- 93 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------cCCCceEEEECCEE----------eEEecc-
Confidence 35788999888 99999999999999999999998 488999 8877641 223332
Q ss_pred ccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCc
Q 007480 126 EGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQG 205 (602)
Q Consensus 126 eG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g 205 (602)
.++. +..++.|++.+.... ++.. .....
T Consensus 94 ~~~~--~~~tv~enl~~~~~~-------~~~~----~~~~~--------------------------------------- 121 (264)
T PRK13546 94 AGLS--GQLTGIENIEFKMLC-------MGFK----RKEIK--------------------------------------- 121 (264)
T ss_pred cCCC--CCCcHHHHHHHHHHH-------cCCC----HHHHH---------------------------------------
Confidence 2222 245677776553211 1110 00000
Q ss_pred ccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHh
Q 007480 206 KSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVA 284 (602)
Q Consensus 206 ~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~ 284 (602)
+..+.+++..+. ...++.+.++|+++++...++ .++ +..|.+ .+.|+|++.||+... ..+.+.+.
T Consensus 122 ----~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~La---ral-~~~p~i---LlLDEPt~gLD~~~~---~~l~~~L~ 187 (264)
T PRK13546 122 ----AMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFS---INI-TVNPDI---LVIDEALSVGDQTFA---QKCLDKIY 187 (264)
T ss_pred ----HHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHH---HHH-hhCCCE---EEEeCccccCCHHHH---HHHHHHHH
Confidence 011111111110 001345667899998888877 344 367777 789999999999984 45555555
Q ss_pred hhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHH
Q 007480 285 SVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVE 326 (602)
Q Consensus 285 ~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e 326 (602)
+..+ ....-..+++. ....-+.+.+-.+++|.+...++..+
T Consensus 188 ~~~~-~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~ 229 (264)
T PRK13546 188 EFKE-QNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDD 229 (264)
T ss_pred HHHH-CCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHH
Confidence 4422 12222344443 22233445555668888866555443
No 290
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.31 E-value=2.6e-12 Score=124.21 Aligned_cols=64 Identities=25% Similarity=0.349 Sum_probs=49.9
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-----ccCcceEE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-----IDGSRTSV 120 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-----~~~~~~~v 120 (602)
..+++++++.+ ++++|+||||||||||+++|+|. .++++| |.+.+.++... .....+++
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGL------------EEPDSGSILIDGEDLTDLEDELPPLRRRIGM 80 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEEccccchhHHHHhhcEEE
Confidence 45899999888 89999999999999999999998 488999 99988765321 11244566
Q ss_pred Eeecc
Q 007480 121 FYLDT 125 (602)
Q Consensus 121 vl~Dt 125 (602)
++++.
T Consensus 81 ~~q~~ 85 (178)
T cd03229 81 VFQDF 85 (178)
T ss_pred EecCC
Confidence 66553
No 291
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.31 E-value=3.6e-12 Score=125.87 Aligned_cols=172 Identities=15% Similarity=0.147 Sum_probs=110.8
Q ss_pred cccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEEEee
Q 007480 51 ETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSVFYL 123 (602)
Q Consensus 51 ~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~vvl~ 123 (602)
.+|+++++.+ ++++|+|+||||||||+++|+|. .++++| |++.+.++... ..+..++++++
T Consensus 22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 89 (207)
T cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRF------------LEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQ 89 (207)
T ss_pred ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcc------------cCCCCCeEEECCEEhHHCCHHHHHhhEEEEec
Confidence 5899999988 89999999999999999999998 488999 99998875321 12457899999
Q ss_pred ccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccC
Q 007480 124 DTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFL 203 (602)
Q Consensus 124 DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~ 203 (602)
|+.-+ ..++.||+.+ ++. ...
T Consensus 90 ~~~~~----~~tv~~~l~~-----------~~~---~~~----------------------------------------- 110 (207)
T cd03369 90 DPTLF----SGTIRSNLDP-----------FDE---YSD----------------------------------------- 110 (207)
T ss_pred CCccc----CccHHHHhcc-----------cCC---CCH-----------------------------------------
Confidence 87432 2366666532 000 000
Q ss_pred CcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHH
Q 007480 204 QGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLV 283 (602)
Q Consensus 204 ~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I 283 (602)
+.+.++++ . ++.+..+++++++...++ ++++ ..|.+ .+.|+|++.||+... +.+.+.+
T Consensus 111 ------~~~~~~l~-~-----~~~~~~LS~G~~qrv~la---ral~-~~p~l---lllDEP~~~LD~~~~---~~l~~~l 168 (207)
T cd03369 111 ------EEIYGALR-V-----SEGGLNLSQGQRQLLCLA---RALL-KRPRV---LVLDEATASIDYATD---ALIQKTI 168 (207)
T ss_pred ------HHHHHHhh-c-----cCCCCcCCHHHHHHHHHH---HHHh-hCCCE---EEEeCCcccCCHHHH---HHHHHHH
Confidence 00111221 0 234567888888888887 4444 67777 789999999999984 5666666
Q ss_pred hhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCC
Q 007480 284 ASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEI 318 (602)
Q Consensus 284 ~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~v 318 (602)
.+..+ ......+++.. .... .+.+-.+++|.+
T Consensus 169 ~~~~~--~~tiii~th~~~~~~~-~d~v~~l~~g~i 201 (207)
T cd03369 169 REEFT--NSTILTIAHRLRTIID-YDKILVMDAGEV 201 (207)
T ss_pred HHhcC--CCEEEEEeCCHHHHhh-CCEEEEEECCEE
Confidence 66532 22334445432 2222 234444456654
No 292
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.31 E-value=4e-12 Score=129.22 Aligned_cols=186 Identities=19% Similarity=0.250 Sum_probs=135.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc-------cccCcceEEEeeccccccccC
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM-------EIDGSRTSVFYLDTEGFESIG 132 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~-------~~~~~~~~vvl~DteG~~~~~ 132 (602)
.|.++.|++|||||||+|+|+|+ ..|++| |.++|..+.. ...+++++|||||...|.
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL------------~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFp--- 89 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGL------------TRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFP--- 89 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhcc------------CCccccEEEECCEEeecccCCcccChhhheeeeEeecccccc---
Confidence 79999999999999999999999 488999 9888865432 124678999999998875
Q ss_pred CCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCcccHHHHH
Q 007480 133 KSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMV 212 (602)
Q Consensus 133 ~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyL 212 (602)
+.+|+-|+.|+... .+....+++..++++.
T Consensus 90 H~tVrgNL~YG~~~-------------~~~~~fd~iv~lLGI~------------------------------------- 119 (352)
T COG4148 90 HYTVRGNLRYGMWK-------------SMRAQFDQLVALLGIE------------------------------------- 119 (352)
T ss_pred ceEEecchhhhhcc-------------cchHhHHHHHHHhCcH-------------------------------------
Confidence 78999999886532 1222333333333321
Q ss_pred HHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCcc
Q 007480 213 HDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIV 292 (602)
Q Consensus 213 e~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l 292 (602)
..| ++.+..+|++.+|..++. ++ ++..|.+ .|.|||.+.||..- ..++..|+..+.+.-.+
T Consensus 120 -hLL--------~R~P~~LSGGEkQRVAIG---RA-LLt~P~L---LLmDEPLaSLD~~R---K~EilpylERL~~e~~I 180 (352)
T COG4148 120 -HLL--------DRYPGTLSGGEKQRVAIG---RA-LLTAPEL---LLMDEPLASLDLPR---KREILPYLERLRDEINI 180 (352)
T ss_pred -HHH--------hhCCCccCcchhhHHHHH---HH-HhcCCCe---eeecCchhhcccch---hhHHHHHHHHHHHhcCC
Confidence 122 345667899999999988 44 3478988 89999999999775 46788888777665556
Q ss_pred ceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHHhH
Q 007480 293 QGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVFNK 330 (602)
Q Consensus 293 ~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~n~ 330 (602)
.-..+++.. -..-+.++|-.+.+|+|-..+.+.+++++
T Consensus 181 PIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 181 PILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred CEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 666777743 33345667778889999888777776654
No 293
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.31 E-value=8.4e-12 Score=124.25 Aligned_cols=154 Identities=14% Similarity=0.089 Sum_probs=99.2
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc-------ccCcce
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-------IDGSRT 118 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~-------~~~~~~ 118 (602)
..+++++++.+ ++++|+|+|||||||||++|+|. .+++.| |++.++++... ..+..+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGE------------MQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc------------CCCCCCeEEECCcccccccccccchhhcceE
Confidence 45899999888 89999999999999999999998 478999 99988765321 012458
Q ss_pred EEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhh
Q 007480 119 SVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLI 198 (602)
Q Consensus 119 ~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~v 198 (602)
+++++++..+ ..++.||+.+... + +..........+++.+.+.. .|.
T Consensus 82 ~~~~q~~~~~----~~t~~~nl~~~~~--------~------~~~~~~~~~~~~~l~~~~~~---------~~~------ 128 (218)
T cd03290 82 AYAAQKPWLL----NATVEENITFGSP--------F------NKQRYKAVTDACSLQPDIDL---------LPF------ 128 (218)
T ss_pred EEEcCCCccc----cccHHHHHhhcCc--------C------CHHHHHHHHHHhCcHHHHHh---------CcC------
Confidence 8888887433 3478888755210 1 11111222222222211100 000
Q ss_pred hhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHH
Q 007480 199 QRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKR 275 (602)
Q Consensus 199 vRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~ 275 (602)
|. + ...+..+..+|+++++...++ .++. ..|.+ .+.|||++.||+...+.
T Consensus 129 ------~~------~--------~~~~~~~~~LS~G~~qrv~la---ral~-~~p~i---lllDEPt~~LD~~~~~~ 178 (218)
T cd03290 129 ------GD------Q--------TEIGERGINLSGGQRQRICVA---RALY-QNTNI---VFLDDPFSALDIHLSDH 178 (218)
T ss_pred ------cc------c--------cCcccCCCcCCHHHHHHHHHH---HHHh-hCCCE---EEEeCCccccCHHHHHH
Confidence 00 0 001234678899999998887 4444 67777 89999999999998543
No 294
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.30 E-value=8.2e-12 Score=125.12 Aligned_cols=190 Identities=18% Similarity=0.132 Sum_probs=111.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeeccccccccCCCCchhH
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSNVYDD 139 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~DteG~~~~~~~tv~d~ 139 (602)
++++|+|+||||||||+++|+|. .+++.| |++.+++... ....+++++++...... ...++.|+
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~-~~~tv~~~ 71 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGL------------IPPAKGTVKVAGASPGK--GWRHIGYVPQRHEFAWD-FPISVAHT 71 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCccchH--hhCcEEEecccccccCC-CCccHHHH
Confidence 79999999999999999999998 478999 9999986532 23568999888643221 13467777
Q ss_pred HHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhC
Q 007480 140 RIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRV 219 (602)
Q Consensus 140 ~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~ 219 (602)
+.++.... .. .++.... ...+.++++++.+
T Consensus 72 l~~~~~~~-~~--~~~~~~~-----------------------------------------------~~~~~~~~~l~~~ 101 (223)
T TIGR03771 72 VMSGRTGH-IG--WLRRPCV-----------------------------------------------ADFAAVRDALRRV 101 (223)
T ss_pred HHhccccc-cc--cccCCcH-----------------------------------------------HHHHHHHHHHHHh
Confidence 65532110 00 0000000 0112233334333
Q ss_pred CC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeec
Q 007480 220 PN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLN 298 (602)
Q Consensus 220 ~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~lt 298 (602)
+. ...++.+.++|+++++...++ +++. ..|.+ .+.|||++.||+... ..+.+.+.+..+ +...-..++
T Consensus 102 ~l~~~~~~~~~~LS~G~~qrv~la---ral~-~~p~l---lilDEP~~~LD~~~~---~~l~~~l~~~~~-~~~tvii~s 170 (223)
T TIGR03771 102 GLTELADRPVGELSGGQRQRVLVA---RALA-TRPSV---LLLDEPFTGLDMPTQ---ELLTELFIELAG-AGTAILMTT 170 (223)
T ss_pred CCchhhcCChhhCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCcccCCHHHH---HHHHHHHHHHHH-cCCEEEEEe
Confidence 32 112345678899999988887 4444 67777 789999999999995 455555655432 222223444
Q ss_pred cHH-HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 299 GNE-FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 299 G~~-l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
+.. ...-+.+.+-.+ +|.+-..++..+.
T Consensus 171 H~~~~~~~~~d~i~~l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 171 HDLAQAMATCDRVVLL-NGRVIADGTPQQL 199 (223)
T ss_pred CCHHHHHHhCCEEEEE-CCEEEeecCHHHh
Confidence 422 222222333344 4766555544443
No 295
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.30 E-value=9.8e-12 Score=123.94 Aligned_cols=183 Identities=14% Similarity=0.099 Sum_probs=108.5
Q ss_pred ccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eE-EcCcccCccccCcceEEEeeccc
Q 007480 52 TIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IW-VWGNPVEMEIDGSRTSVFYLDTE 126 (602)
Q Consensus 52 iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iw-i~~~~~~~~~~~~~~~vvl~Dte 126 (602)
+|+++++.+ ++++|+||||||||||+++|+|. .++++| |+ +.+..... + ++.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl------------~~~~sG~i~~~~~~~~~~-------~---~~~- 58 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGL------------DAPDEGDFIGLRGDALPL-------G---ANS- 58 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------ccCCCCCEEEecCceecc-------c---ccc-
Confidence 578899888 89999999999999999999998 478999 86 55432211 0 111
Q ss_pred cccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCcc
Q 007480 127 GFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGK 206 (602)
Q Consensus 127 G~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~ 206 (602)
. ..+..++.||+.+.... |.... ++..+.+....++
T Consensus 59 ~--l~~~ltv~enl~~~~~~-------~~~~~---~~~~~~~~~~~~l-------------------------------- 94 (213)
T PRK15177 59 F--ILPGLTGEENARMMASL-------YGLDG---DEFSHFCYQLTQL-------------------------------- 94 (213)
T ss_pred c--cCCcCcHHHHHHHHHHH-------cCCCH---HHHHHHHHHHhCh--------------------------------
Confidence 1 12356888888765432 22110 0000000000010
Q ss_pred cHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 007480 207 SVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASV 286 (602)
Q Consensus 207 t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~ 286 (602)
+.. .++.+.+++++++++..++ .+++ .+|.. .+.|||+..+|+...+ .+.+.+...
T Consensus 95 ------~~~--------~~~~~~~lS~G~~qrv~la---~al~-~~p~l---lllDEP~~~lD~~~~~---~~~~~l~~~ 150 (213)
T PRK15177 95 ------EQC--------YTDRVSEYSVTMKTHLAFA---INLL-LPCRL---YIADGKLYTGDNATQL---RMQAALACQ 150 (213)
T ss_pred ------hHH--------hhchHhhcCHHHHHHHHHH---HHHh-cCCCE---EEECCCCccCCHHHHH---HHHHHHHHH
Confidence 000 1244567788888888887 4444 56776 7899999999999844 455544433
Q ss_pred cCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 287 TRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 287 ~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
.+.++ -..+++.. ....+.+.+-.+++|.+-..+++.+.
T Consensus 151 ~~~~~--ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 190 (213)
T PRK15177 151 LQQKG--LIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQA 190 (213)
T ss_pred hhCCc--EEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHH
Confidence 33222 23444432 22223445556688988766666554
No 296
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.29 E-value=3.4e-12 Score=144.56 Aligned_cols=203 Identities=17% Similarity=0.208 Sum_probs=135.6
Q ss_pred cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc---cccCcceEEE
Q 007480 49 GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM---EIDGSRTSVF 121 (602)
Q Consensus 49 al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~---~~~~~~~~vv 121 (602)
...+|+++++.+ +.+||+||+|||||||+|.|+|+ .++++| |.++|.++.. ...++.+++|
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~------------~~~~~G~I~idg~dI~~i~~~~lr~~I~~V 408 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRL------------YDPTSGEILIDGIDIRDISLDSLRKRIGIV 408 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhcc------------CCCCCCeEEECCEehhhcCHHHHHHhccEE
Confidence 457899999888 99999999999999999999999 478999 9998888764 2246789999
Q ss_pred eeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhc
Q 007480 122 YLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRD 201 (602)
Q Consensus 122 l~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRD 201 (602)
.||+..|. +|++||+.++.. ..+++++.+.....++.+.+.. .|.
T Consensus 409 ~Qd~~LF~----~TI~~NI~~g~~-------------~at~eei~~a~k~a~~~d~I~~---------lp~--------- 453 (567)
T COG1132 409 SQDPLLFS----GTIRENIALGRP-------------DATDEEIEEALKLANAHEFIAN---------LPD--------- 453 (567)
T ss_pred cccceeec----ccHHHHHhcCCC-------------CCCHHHHHHHHHHhChHHHHHh---------Ccc---------
Confidence 99998884 589999987531 1344555555554444333211 121
Q ss_pred cCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHH
Q 007480 202 FLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKK 281 (602)
Q Consensus 202 f~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~ 281 (602)
|- ...- .+.-..+|+|++|+.+++ +++. ..|.+ .+.||+++.||++.-+ .+.+
T Consensus 454 ---g~----------dt~v----ge~G~~LSgGQrQrlaiA---Rall-~~~~I---LILDEaTSalD~~tE~---~I~~ 506 (567)
T COG1132 454 ---GY----------DTIV----GERGVNLSGGQRQRLAIA---RALL-RNPPI---LILDEATSALDTETEA---LIQD 506 (567)
T ss_pred ---cc----------ccee----cCCCccCCHHHHHHHHHH---HHHh-cCCCE---EEEeccccccCHHhHH---HHHH
Confidence 10 0000 112246899999999999 6776 45555 6899999999999843 3444
Q ss_pred HHhhhcCCCccceEeeccHHHHHHH-HHHHHHHcCCCCCCCcchHHHH
Q 007480 282 LVASVTRPKIVQGKFLNGNEFVAFM-EQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 282 ~I~~~~~pK~l~g~~ltG~~l~~lv-~~yv~aINsG~vP~~~sl~e~~ 328 (602)
.+.+..+-| +...+.++. .+.- .+.+-.+++|.+-..++-.|..
T Consensus 507 ~l~~l~~~r--T~iiIaHRl-sti~~aD~IiVl~~G~i~e~G~h~eLl 551 (567)
T COG1132 507 ALKKLLKGR--TTLIIAHRL-STIKNADRIIVLDNGRIVERGTHEELL 551 (567)
T ss_pred HHHHHhcCC--EEEEEeccH-hHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 454443333 334456543 2221 2234455889887878766654
No 297
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.29 E-value=5.2e-12 Score=143.77 Aligned_cols=202 Identities=14% Similarity=0.186 Sum_probs=129.1
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc---cccCcceEEEe
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM---EIDGSRTSVFY 122 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~---~~~~~~~~vvl 122 (602)
..+|+++++.+ +.++|+||+|||||||++.|+|. .++++| |.+.|.++.. ...+..++++.
T Consensus 348 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~------------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 415 (585)
T TIGR01192 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRV------------YDPTVGQILIDGIDINTVTRESLRKSIATVF 415 (585)
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccC------------CCCCCCEEEECCEEhhhCCHHHHHhheEEEc
Confidence 35899999888 99999999999999999999998 488999 9999987643 12346789999
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
||+.-+ ..|++||+.++. ...+++++.......++.+.+.. .|
T Consensus 416 q~~~lf----~~ti~~Ni~~~~-------------~~~~~~~~~~a~~~~~~~~~i~~---------l~----------- 458 (585)
T TIGR01192 416 QDAGLF----NRSIRENIRLGR-------------EGATDEEVYEAAKAAAAHDFILK---------RS----------- 458 (585)
T ss_pred cCCccC----cccHHHHHhcCC-------------CCCCHHHHHHHHHHhCcHHHHHh---------cc-----------
Confidence 998655 358899986531 11233444444333333322210 01
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~ 282 (602)
+|. +..+ ++....+|+|++++..++ +++. ..|.+ .+.|||+++||++.. +.+.+.
T Consensus 459 -~g~------~t~~--------~~~~~~LSgGq~qrl~lA---Rall-~~p~i---lilDEpts~LD~~~~---~~i~~~ 513 (585)
T TIGR01192 459 -NGY------DTLV--------GERGNRLSGGERQRLAIA---RAIL-KNAPI---LVLDEATSALDVETE---ARVKNA 513 (585)
T ss_pred -ccc------cchh--------cCCCCCCCHHHHHHHHHH---HHHh-cCCCE---EEEECCccCCCHHHH---HHHHHH
Confidence 110 0000 123456899999999888 5554 67777 789999999999984 455555
Q ss_pred HhhhcCCCccceEeeccHHHHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 283 VASVTRPKIVQGKFLNGNEFVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 283 I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
+.+..+.+ .-..+++..-.--..+.+-.+++|++...++..+.
T Consensus 514 l~~~~~~~--tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 556 (585)
T TIGR01192 514 IDALRKNR--TTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQEL 556 (585)
T ss_pred HHHHhCCC--EEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 65543322 23455654311111233334578887666665444
No 298
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.29 E-value=1.4e-11 Score=124.93 Aligned_cols=203 Identities=15% Similarity=0.157 Sum_probs=117.0
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc----cCcceEEE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI----DGSRTSVF 121 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~----~~~~~~vv 121 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|... .++++| |.+.+.++.... .+..++++
T Consensus 14 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 83 (248)
T PRK09580 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRED----------YEVTGGTVEFKGKDLLELSPEDRAGEGIFMA 83 (248)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCcc----------CCCCceEEEECCCccccCCHHHHhhcceEEE
Confidence 45899999888 8999999999999999999999720 158899 999987664211 12457888
Q ss_pred eeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhc
Q 007480 122 YLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRD 201 (602)
Q Consensus 122 l~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRD 201 (602)
++++..+.. .+ +..+.... + .+.. . +... +
T Consensus 84 ~q~~~~~~~---~~---~~~~~~~~-~-----~~~~------------------~------------~~~~--------~ 113 (248)
T PRK09580 84 FQYPVEIPG---VS---NQFFLQTA-L-----NAVR------------------S------------YRGQ--------E 113 (248)
T ss_pred ecCchhccc---hh---HHHHHHHh-h-----hhhh------------------c------------cccc--------c
Confidence 887644321 11 11111000 0 0000 0 0000 0
Q ss_pred cCCcccHHHHHHHHHHhCCCC--CCCCCch-hhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHH
Q 007480 202 FLQGKSVQEMVHDALQRVPND--KGDKNID-MVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQ 278 (602)
Q Consensus 202 f~~g~t~~eyLe~aL~~~~~~--~~~~~i~-~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~ 278 (602)
..+.....+.++..++.++.+ ..++.+. ++|+++++...++ +++ +..|.+ .+.|||++.||++..+ .
T Consensus 114 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~la---ral-~~~p~i---llLDEPt~~LD~~~~~---~ 183 (248)
T PRK09580 114 PLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL---QMA-VLEPEL---CILDESDSGLDIDALK---I 183 (248)
T ss_pred cchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHH---HHH-HcCCCE---EEEeCCCccCCHHHHH---H
Confidence 000001233445555544331 1123343 6999999998888 444 467777 8899999999999954 5
Q ss_pred HHHHHhhhcCCCccceEeeccH-HHHHHH-HHHHHHHcCCCCCCCcc
Q 007480 279 LKKLVASVTRPKIVQGKFLNGN-EFVAFM-EQILEALNKGEIPSTGS 323 (602)
Q Consensus 279 L~~~I~~~~~pK~l~g~~ltG~-~l~~lv-~~yv~aINsG~vP~~~s 323 (602)
+.+.+.+..+ ....-..+++. .+...+ .+.+-.+++|.+...++
T Consensus 184 l~~~l~~l~~-~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~ 229 (248)
T PRK09580 184 VADGVNSLRD-GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 229 (248)
T ss_pred HHHHHHHHHh-CCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCC
Confidence 5555554432 12223345553 333332 34455668888755444
No 299
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=1.3e-11 Score=129.62 Aligned_cols=221 Identities=16% Similarity=0.216 Sum_probs=128.5
Q ss_pred EEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccC----CCcc-eEE
Q 007480 33 IVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDT----KTKG-IWV 104 (602)
Q Consensus 33 lv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~----~TkG-Iwi 104 (602)
++.+++.+ +.+ ....+|+++++.+ ++++|+|+|||||||||++|+|.. .+ ++.| |.+
T Consensus 45 ~l~i~nl~--~~~--~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~-----------~~~~~~p~~G~I~i 109 (305)
T PRK14264 45 KLSVEDLD--VYY--GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMN-----------DRIKAARIDGSVEL 109 (305)
T ss_pred eEEEEEEE--EEe--CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-----------cccCCCCCceEEEE
Confidence 45565433 222 2346899999988 899999999999999999999983 22 5899 999
Q ss_pred cCcccCcc-----ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhh--hhhhcccchhhhHHHHHHHHHHHhhhhh
Q 007480 105 WGNPVEME-----IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMS--SVLIYNLPETIREADISRLSFAVELAEE 177 (602)
Q Consensus 105 ~~~~~~~~-----~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLS--S~~IyN~~~~i~e~~l~~L~~~~~L~~~ 177 (602)
.|.++... ..+..+++++++...+. .++.||+.++....-. .-+.....+. .
T Consensus 110 ~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~----~tv~enl~~~~~~~~~~~~~~~~~~~~~-~---------------- 168 (305)
T PRK14264 110 DGQDIYQDGVNLVELRKRVGMVFQSPNPFP----KSIRENISYGPRKHGDINTGLLARLLGR-D---------------- 168 (305)
T ss_pred CCEEcccccccHHHHhhceEEEccCCcccc----ccHHHHHHhHHhhccccccccccccccc-C----------------
Confidence 98765321 12356899998864332 4888988775421000 0000000000 0
Q ss_pred hhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-----CCCCCCchhhhhHHHHHHhhcCCCcEEEccC
Q 007480 178 FYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-----DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQ 252 (602)
Q Consensus 178 i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-----~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~ 252 (602)
.....++.++.+++..+. ...++.+.++|++++++..++ .+++ .+
T Consensus 169 --------------------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LA---raL~-~~ 218 (305)
T PRK14264 169 --------------------------DKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIA---RCLA-VD 218 (305)
T ss_pred --------------------------chHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHH---HHHh-cC
Confidence 000011222223322211 011345678999999999888 4544 67
Q ss_pred ccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHH-HHHcCCCCCCCcchHHH
Q 007480 253 PHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQIL-EALNKGEIPSTGSLVEV 327 (602)
Q Consensus 253 P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv-~aINsG~vP~~~sl~e~ 327 (602)
|.+ .+.|+|+++||+... ..+.+.|.+..+. ..-..+++.. ....+.+.+ -.+++|.+-..+...+.
T Consensus 219 p~l---LLLDEPtsgLD~~~~---~~l~~~L~~~~~~--~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~~g~~~~~ 287 (305)
T PRK14264 219 PEV---ILMDEPASALDPIAT---SKIEDLIEELAEE--YTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKI 287 (305)
T ss_pred CCE---EEEeCCcccCCHHHH---HHHHHHHHHHhcC--CEEEEEEcCHHHHHHhcCEEEEEecCCEEEEeCCHHHH
Confidence 777 899999999999984 4566666665442 2223444422 222222332 23478877555444333
No 300
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.28 E-value=5.8e-12 Score=123.62 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=57.9
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCccccccc--CCCcc-eEEcCcccCccccCcceEEEee
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRD--TKTKG-IWVWGNPVEMEIDGSRTSVFYL 123 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~--~~TkG-Iwi~~~~~~~~~~~~~~~vvl~ 123 (602)
..+|+++++.+ ++++|+||||||||||++.|+|. . ++++| |.+.++++........++++++
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl------------~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q 89 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGR------------RTGLGVSGEVLINGRPLDKRSFRKIIGYVPQ 89 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCCCceEEEECCEeCchHhhhheEEEccC
Confidence 45899999988 89999999999999999999998 5 78899 9999887643222345777777
Q ss_pred ccccccccCCCCchhHHH
Q 007480 124 DTEGFESIGKSNVYDDRI 141 (602)
Q Consensus 124 DteG~~~~~~~tv~d~~i 141 (602)
+..-+ +..++.|++.
T Consensus 90 ~~~~~---~~~t~~~~i~ 104 (194)
T cd03213 90 DDILH---PTLTVRETLM 104 (194)
T ss_pred cccCC---CCCcHHHHHH
Confidence 65322 2345555554
No 301
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.28 E-value=8.7e-12 Score=142.85 Aligned_cols=204 Identities=15% Similarity=0.168 Sum_probs=123.2
Q ss_pred cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCC---Ccc-eEEcCcccCccccCcceEEE
Q 007480 49 GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTK---TKG-IWVWGNPVEMEIDGSRTSVF 121 (602)
Q Consensus 49 al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~---TkG-Iwi~~~~~~~~~~~~~~~vv 121 (602)
...+|+++++.+ ++++|+||+||||||||+.|+|.. ++ .+| |++.|.+......++.++++
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~------------~~~~~~~G~i~~~g~~~~~~~~~~~i~yv 104 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRS------------PKGVKGSGSVLLNGMPIDAKEMRAISAYV 104 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC------------CCCCcceeEEEECCEECCHHHHhhhceee
Confidence 466899999888 899999999999999999999973 33 478 99999887533334678999
Q ss_pred eeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhc
Q 007480 122 YLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRD 201 (602)
Q Consensus 122 l~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRD 201 (602)
.||..-+ +..|++||+.|+...-+. .+......+..++++...+++.+.. |
T Consensus 105 ~Q~~~~~---~~lTV~e~l~f~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~~~~----------------------~ 155 (617)
T TIGR00955 105 QQDDLFI---PTLTVREHLMFQAHLRMP----RRVTKKEKRERVDEVLQALGLRKCA----------------------N 155 (617)
T ss_pred ccccccC---ccCcHHHHHHHHHhcCCC----CCCCHHHHHHHHHHHHHHcCchhcC----------------------c
Confidence 9987544 367999999997643000 0000111111222222222221100 0
Q ss_pred cCCcccHHHHHHHHHHhCCCCCCCC-CchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHH
Q 007480 202 FLQGKSVQEMVHDALQRVPNDKGDK-NIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLK 280 (602)
Q Consensus 202 f~~g~t~~eyLe~aL~~~~~~~~~~-~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~ 280 (602)
..- ++. ....+|++++++..++ +..+..|.+ .+.|||+++||+... .++.
T Consensus 156 ----------------t~v---g~~~~~~~LSgGqrkRvsia----~aL~~~p~v---lllDEPtsgLD~~~~---~~l~ 206 (617)
T TIGR00955 156 ----------------TRI---GVPGRVKGLSGGERKRLAFA----SELLTDPPL---LFCDEPTSGLDSFMA---YSVV 206 (617)
T ss_pred ----------------Ccc---CCCCCCCCcCcchhhHHHHH----HHHHcCCCE---EEeeCCCcchhHHHH---HHHH
Confidence 000 000 1245888998888887 334477877 889999999999984 4555
Q ss_pred HHHhhhcCCCccceEeeccHHHH---HHHHHHHHHHcCCCCCCCcch
Q 007480 281 KLVASVTRPKIVQGKFLNGNEFV---AFMEQILEALNKGEIPSTGSL 324 (602)
Q Consensus 281 ~~I~~~~~pK~l~g~~ltG~~l~---~lv~~yv~aINsG~vP~~~sl 324 (602)
+.+.+..+ +... ..++.++.. .-..+.+-.+++|.+-..++.
T Consensus 207 ~~L~~l~~-~g~t-vi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~ 251 (617)
T TIGR00955 207 QVLKGLAQ-KGKT-IICTIHQPSSELFELFDKIILMAEGRVAYLGSP 251 (617)
T ss_pred HHHHHHHh-CCCE-EEEEeCCCCHHHHHHhceEEEeeCCeEEEECCH
Confidence 55555432 2222 222222221 123344445577776555554
No 302
>PLN03232 ABC transporter C family member; Provisional
Probab=99.28 E-value=3.5e-12 Score=158.60 Aligned_cols=210 Identities=14% Similarity=0.097 Sum_probs=140.7
Q ss_pred eEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc---ccc
Q 007480 42 KLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM---EID 114 (602)
Q Consensus 42 ~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~---~~~ 114 (602)
.+++.++...+|+++++.+ +.|||+|++|||||||++.|+|. .++++| |.++|.++.. ...
T Consensus 1241 sf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl------------~~p~~G~I~IdG~di~~i~~~~l 1308 (1495)
T PLN03232 1241 HLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRI------------VELEKGRIMIDDCDVAKFGLTDL 1308 (1495)
T ss_pred EEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CcCCCceEEECCEEhhhCCHHHH
Confidence 4555554456999999988 99999999999999999999998 488999 9999998753 224
Q ss_pred CcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccc
Q 007480 115 GSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKL 194 (602)
Q Consensus 115 ~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~f 194 (602)
++.++++.||+..|. +|++||+.. ++ ..+++++.+....+++.+.+.. .|
T Consensus 1309 R~~i~iVpQdp~LF~----gTIr~NL~~-----------~~---~~sdeei~~al~~a~l~~~I~~---------lp--- 1358 (1495)
T PLN03232 1309 RRVLSIIPQSPVLFS----GTVRFNIDP-----------FS---EHNDADLWEALERAHIKDVIDR---------NP--- 1358 (1495)
T ss_pred HhhcEEECCCCeeeC----ccHHHHcCC-----------CC---CCCHHHHHHHHHHcCCHHHHHh---------Cc---
Confidence 678999999998774 489998753 11 2445566666666666544321 12
Q ss_pred hhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHH
Q 007480 195 VWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVK 274 (602)
Q Consensus 195 lw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e 274 (602)
+|. +.. + .+.-..+|+|++|+..++ +++. .+|.+ .+.||+++.||++.-+
T Consensus 1359 ---------~GL------dt~---v-----~e~G~~LSgGQrQrlaLA---RALL-r~~~I---LILDEATSaLD~~Te~ 1408 (1495)
T PLN03232 1359 ---------FGL------DAE---V-----SEGGENFSVGQRQLLSLA---RALL-RRSKI---LVLDEATASVDVRTDS 1408 (1495)
T ss_pred ---------CCC------Cce---e-----cCCCCCCCHHHHHHHHHH---HHHH-hCCCE---EEEECCcccCCHHHHH
Confidence 110 000 0 112246899999999998 5654 66776 7899999999999843
Q ss_pred HHHHHHHHHhhhcCCCccceEeeccHHHHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 275 RREQLKKLVASVTRPKIVQGKFLNGNEFVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 275 ~~~~L~~~I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
.+.+.|.+..+.++ -..++++.-.-.-.+.+-.+++|++-..++..+..
T Consensus 1409 ---~Iq~~L~~~~~~~T--vI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl 1457 (1495)
T PLN03232 1409 ---LIQRTIREEFKSCT--MLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELL 1457 (1495)
T ss_pred ---HHHHHHHHHcCCCE--EEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 44555555543333 35666643111112233344788887777766554
No 303
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=9.3e-12 Score=140.06 Aligned_cols=197 Identities=16% Similarity=0.228 Sum_probs=122.9
Q ss_pred EEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcc
Q 007480 33 IVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNP 108 (602)
Q Consensus 33 lv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~ 108 (602)
++.+++.+..+ +...+|+++++.+ ++++|+||||||||||+++|+|. .+++.| |.+.+.
T Consensus 319 ~l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~------------~~p~~G~i~~~~~- 381 (530)
T PRK15064 319 ALEVENLTKGF----DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGE------------LEPDSGTVKWSEN- 381 (530)
T ss_pred eEEEEeeEEee----CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCeEEEECCc-
Confidence 55555443222 2345899999988 89999999999999999999998 478999 876542
Q ss_pred cCccccCcceEEEeeccc-cccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCccc
Q 007480 109 VEMEIDGSRTSVFYLDTE-GFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDV 187 (602)
Q Consensus 109 ~~~~~~~~~~~vvl~Dte-G~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~ 187 (602)
..++++.|+.. .+. +..++.|++.+ +... ...+
T Consensus 382 -------~~i~~~~q~~~~~~~--~~~t~~~~~~~-----------~~~~-~~~~------------------------- 415 (530)
T PRK15064 382 -------ANIGYYAQDHAYDFE--NDLTLFDWMSQ-----------WRQE-GDDE------------------------- 415 (530)
T ss_pred -------eEEEEEcccccccCC--CCCcHHHHHHH-----------hccC-CccH-------------------------
Confidence 45889988763 222 23456665321 0000 0001
Q ss_pred ccCcccchhhhhhccCCcccHHHHHHHHHHhCCC--CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCC
Q 007480 188 AFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN--DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKD 265 (602)
Q Consensus 188 ~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~--~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~ 265 (602)
+.++++|+.++. ...++.+.++|+|++++..++ .++ +..|.+ .+.|||+
T Consensus 416 ----------------------~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la---~al-~~~p~l---llLDEPt 466 (530)
T PRK15064 416 ----------------------QAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFG---KLM-MQKPNV---LVMDEPT 466 (530)
T ss_pred ----------------------HHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHH---HHH-hcCCCE---EEEcCCC
Confidence 112222222221 112456788999999999988 444 467877 8999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCC-CCcchHHHH
Q 007480 266 EELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIP-STGSLVEVF 328 (602)
Q Consensus 266 ~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP-~~~sl~e~~ 328 (602)
+.||+...+ .+.+.+.+. .. .-..+|+. .+...+.+++-.+++|.+- ..++..+..
T Consensus 467 ~~LD~~~~~---~l~~~l~~~--~~--tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 467 NHMDMESIE---SLNMALEKY--EG--TLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred CCCCHHHHH---HHHHHHHHC--CC--EEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 999999954 555555543 11 23455553 3344445566667788764 445554443
No 304
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.27 E-value=1.2e-11 Score=137.34 Aligned_cols=188 Identities=15% Similarity=0.137 Sum_probs=113.0
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeecc
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLDT 125 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~Dt 125 (602)
..+|+++++.+ ++++|+|||||||||||++|+|. .++++| |++.+.+.. +..+
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGL------------l~P~sGeI~I~G~~~~----------i~~~- 93 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGV------------TMPNKGTVDIKGSAAL----------IAIS- 93 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCC------------CCCCceEEEECCEeee----------EEec-
Confidence 35899999888 89999999999999999999998 488999 998875421 1111
Q ss_pred ccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCc
Q 007480 126 EGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQG 205 (602)
Q Consensus 126 eG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g 205 (602)
.++ .+..++.|++.+.... ++... +..
T Consensus 94 ~~l--~~~lTV~EnL~l~~~~-------~~~~~----~e~---------------------------------------- 120 (549)
T PRK13545 94 SGL--NGQLTGIENIELKGLM-------MGLTK----EKI---------------------------------------- 120 (549)
T ss_pred ccc--CCCCcHHHHHHhhhhh-------cCCCH----HHH----------------------------------------
Confidence 122 2345788887653321 11110 000
Q ss_pred ccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHh
Q 007480 206 KSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVA 284 (602)
Q Consensus 206 ~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~ 284 (602)
.+.++.+++..+. ...++.+.++|+|++++..++ .++ +..|.+ .+.|||+++||+... +.+.+.+.
T Consensus 121 ---~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLA---rAL-~~~P~L---LLLDEPTsgLD~~sr---~~LlelL~ 187 (549)
T PRK13545 121 ---KEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFA---ISV-HINPDI---LVIDEALSVGDQTFT---KKCLDKMN 187 (549)
T ss_pred ---HHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHH---HHH-HhCCCE---EEEECCcccCCHHHH---HHHHHHHH
Confidence 0111112221111 011345678899999998888 444 467777 899999999999984 45666665
Q ss_pred hhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 285 SVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 285 ~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
+... ....-..+++. ....-+.+.+-.+++|.+...++..+.
T Consensus 188 el~~-~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el 230 (549)
T PRK13545 188 EFKE-QGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEV 230 (549)
T ss_pred HHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 5432 12222344443 222223334445578887666655444
No 305
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.27 E-value=2.7e-11 Score=123.61 Aligned_cols=162 Identities=12% Similarity=0.072 Sum_probs=98.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeeccccccccCCCCchhH
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSNVYDD 139 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~DteG~~~~~~~tv~d~ 139 (602)
++++|+||||||||||+++|+|. .+++.| |.+.+. .++++.++.... ...++.|+
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~------------~~p~~G~i~~~g~---------~i~~~~q~~~~~---~~~tv~e~ 81 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGV------------LKPDEGDIEIELD---------TVSYKPQYIKAD---YEGTVRDL 81 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC------------CcCCCCeEEECCc---------eEEEecccccCC---CCCCHHHH
Confidence 69999999999999999999998 488999 876653 567777765432 24577776
Q ss_pred HHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhC
Q 007480 140 RIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRV 219 (602)
Q Consensus 140 ~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~ 219 (602)
+.+.... +. . ..... +++++.+
T Consensus 82 l~~~~~~-------~~---~-~~~~~-----------------------------------------------~~~l~~l 103 (246)
T cd03237 82 LSSITKD-------FY---T-HPYFK-----------------------------------------------TEIAKPL 103 (246)
T ss_pred HHHHhhh-------cc---c-cHHHH-----------------------------------------------HHHHHHc
Confidence 5442211 00 0 00001 1111111
Q ss_pred CC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeec
Q 007480 220 PN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLN 298 (602)
Q Consensus 220 ~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~lt 298 (602)
+. ...++.+.++|++++++..++ .++. ..|.+ .+.|||++.||+... ..+.+.|.+..+.+...-..++
T Consensus 104 ~l~~~~~~~~~~LSgGe~qrv~ia---raL~-~~p~l---lllDEPt~~LD~~~~---~~l~~~l~~~~~~~~~tiiivs 173 (246)
T cd03237 104 QIEQILDREVPELSGGELQRVAIA---ACLS-KDADI---YLLDEPSAYLDVEQR---LMASKVIRRFAENNEKTAFVVE 173 (246)
T ss_pred CCHHHhhCChhhCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCcccCCHHHH---HHHHHHHHHHHHhcCCEEEEEe
Confidence 11 011355678999999999888 4544 67777 889999999999994 4555666555432223334555
Q ss_pred cH-HHHHHHHHHHHHHc
Q 007480 299 GN-EFVAFMEQILEALN 314 (602)
Q Consensus 299 G~-~l~~lv~~yv~aIN 314 (602)
+. .+...+.+.+-.++
T Consensus 174 Hd~~~~~~~~d~i~~l~ 190 (246)
T cd03237 174 HDIIMIDYLADRLIVFE 190 (246)
T ss_pred CCHHHHHHhCCEEEEEc
Confidence 53 22333334444443
No 306
>PLN03130 ABC transporter C family member; Provisional
Probab=99.27 E-value=6.8e-12 Score=156.68 Aligned_cols=209 Identities=14% Similarity=0.092 Sum_probs=141.5
Q ss_pred eEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc---ccc
Q 007480 42 KLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM---EID 114 (602)
Q Consensus 42 ~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~---~~~ 114 (602)
.+++.++...+|+++++.| +.|||+|++|||||||++.|+|+ ..+++| |.++|.++.. ...
T Consensus 1244 sf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl------------~~p~~G~I~IDG~dI~~i~l~~L 1311 (1622)
T PLN03130 1244 VLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRI------------VELERGRILIDGCDISKFGLMDL 1311 (1622)
T ss_pred EEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCc------------CCCCCceEEECCEecccCCHHHH
Confidence 4555544446999999988 99999999999999999999998 488999 9999998764 224
Q ss_pred CcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccc
Q 007480 115 GSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKL 194 (602)
Q Consensus 115 ~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~f 194 (602)
++.++++.||+..|. +|++||+... + ..+++++.+....+++.+.+.. .|
T Consensus 1312 R~~IsiVpQdp~LF~----GTIreNLd~~-----------~---~~tdeei~~Al~~a~l~~~I~~---------lp--- 1361 (1622)
T PLN03130 1312 RKVLGIIPQAPVLFS----GTVRFNLDPF-----------N---EHNDADLWESLERAHLKDVIRR---------NS--- 1361 (1622)
T ss_pred HhccEEECCCCcccc----ccHHHHhCcC-----------C---CCCHHHHHHHHHHcCcHHHHHh---------Cc---
Confidence 678999999998874 4899998541 1 2345666666666666554421 12
Q ss_pred hhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHH
Q 007480 195 VWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVK 274 (602)
Q Consensus 195 lw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e 274 (602)
+|. +.. + .+.-..+|+|++|+..++ ++++ ..|.+ .+.||+++.||++.-+
T Consensus 1362 ---------~GL------dt~---V-----ge~G~nLSgGQrQrlaLA---RALL-r~p~I---LILDEATSaLD~~Te~ 1411 (1622)
T PLN03130 1362 ---------LGL------DAE---V-----SEAGENFSVGQRQLLSLA---RALL-RRSKI---LVLDEATAAVDVRTDA 1411 (1622)
T ss_pred ---------ccc------Ccc---c-----cCCCCCCCHHHHHHHHHH---HHHH-cCCCE---EEEECCCCCCCHHHHH
Confidence 111 000 1 112246899999999998 5554 67777 7899999999999843
Q ss_pred HHHHHHHHHhhhcCCCccceEeeccHHHHHH-HHHHHHHHcCCCCCCCcchHHHH
Q 007480 275 RREQLKKLVASVTRPKIVQGKFLNGNEFVAF-MEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 275 ~~~~L~~~I~~~~~pK~l~g~~ltG~~l~~l-v~~yv~aINsG~vP~~~sl~e~~ 328 (602)
.+.+.|.+..+.++ -..++++. .+. -.+.+-.+.+|.+-..++..+..
T Consensus 1412 ---~Iq~~I~~~~~~~T--vI~IAHRL-~tI~~~DrIlVLd~G~IvE~Gt~~eLl 1460 (1622)
T PLN03130 1412 ---LIQKTIREEFKSCT--MLIIAHRL-NTIIDCDRILVLDAGRVVEFDTPENLL 1460 (1622)
T ss_pred ---HHHHHHHHHCCCCE--EEEEeCCh-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 45555655543333 34555532 222 12334445788887777665543
No 307
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.27 E-value=2.1e-11 Score=150.74 Aligned_cols=164 Identities=17% Similarity=0.171 Sum_probs=108.0
Q ss_pred cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeec
Q 007480 49 GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLD 124 (602)
Q Consensus 49 al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~D 124 (602)
...+|+++++.+ ++++|+||||||||||||+|+|... . ..+++| |+++|.+... ..++.++++.||
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~-~--------g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~ 844 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVT-T--------GVITGGDRLVNGRPLDS-SFQRSIGYVQQQ 844 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC-C--------CCcceeEEEECCEECCh-hhhcceeeeccc
Confidence 456899999888 8999999999999999999999830 0 026789 9999988742 234678999998
Q ss_pred cccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCC
Q 007480 125 TEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQ 204 (602)
Q Consensus 125 teG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~ 204 (602)
...+ +..|++|++.|+...-+.. .....
T Consensus 845 ~~~~---~~~Tv~E~L~~~a~l~~~~----~~~~~--------------------------------------------- 872 (1394)
T TIGR00956 845 DLHL---PTSTVRESLRFSAYLRQPK----SVSKS--------------------------------------------- 872 (1394)
T ss_pred ccCC---CCCCHHHHHHHHHHhCCCC----CCCHH---------------------------------------------
Confidence 6433 3679999998865431000 00000
Q ss_pred cccHHHHHHHHHHhCCC-CCCCCCch----hhhhHHHHHHhhcCCCcEEEccCcc-chhcccCCCCCCCCCHHHHHHHHH
Q 007480 205 GKSVQEMVHDALQRVPN-DKGDKNID----MVNQIRNSLAIMGDNSTAFSLPQPH-LLRTKLCDMKDEELDPIYVKRREQ 278 (602)
Q Consensus 205 g~t~~eyLe~aL~~~~~-~~~~~~i~----~ln~~r~~i~~~f~~~~cf~L~~P~-~~~~~L~d~p~~~Ld~~F~e~~~~ 278 (602)
...++++++++..+. +..++.+. .+|++++++..++ +.++.+|. + .+.|||+++||+.... .
T Consensus 873 --~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia----~aL~~~P~~i---LlLDEPTsgLD~~~~~---~ 940 (1394)
T TIGR00956 873 --EKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIG----VELVAKPKLL---LFLDEPTSGLDSQTAW---S 940 (1394)
T ss_pred --HHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHH----HHHHcCCCeE---EEEcCCCCCCCHHHHH---H
Confidence 112223333333222 11122222 6899999998887 34446774 6 7899999999999844 4
Q ss_pred HHHHHhhh
Q 007480 279 LKKLVASV 286 (602)
Q Consensus 279 L~~~I~~~ 286 (602)
+.+.+.++
T Consensus 941 i~~~L~~l 948 (1394)
T TIGR00956 941 ICKLMRKL 948 (1394)
T ss_pred HHHHHHHH
Confidence 55555544
No 308
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.26 E-value=7.3e-12 Score=148.01 Aligned_cols=203 Identities=14% Similarity=0.245 Sum_probs=136.0
Q ss_pred cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc---cccCcceEEE
Q 007480 49 GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM---EIDGSRTSVF 121 (602)
Q Consensus 49 al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~---~~~~~~~~vv 121 (602)
...+|+++++.| +.|++|||+||||||+++.|.++ ..|++| |.++|.++.. +..+.++++|
T Consensus 365 dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rf------------ydP~~G~V~idG~di~~~~~~~lr~~iglV 432 (1228)
T KOG0055|consen 365 DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARF------------YDPTSGEVLIDGEDIRNLNLKWLRSQIGLV 432 (1228)
T ss_pred cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHh------------cCCCCceEEEcCccchhcchHHHHhhcCee
Confidence 467899999988 99999999999999999999999 489999 9999998864 2246789999
Q ss_pred eeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhc
Q 007480 122 YLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRD 201 (602)
Q Consensus 122 l~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRD 201 (602)
.|++-.|. +|++||+.|+. ...+++++.+.....+..+.+ .+.|.
T Consensus 433 ~QePvlF~----~tI~eNI~~G~-------------~dat~~~i~~a~k~ana~~fi---------~~lp~--------- 477 (1228)
T KOG0055|consen 433 SQEPVLFA----TTIRENIRYGK-------------PDATREEIEEAAKAANAHDFI---------LKLPD--------- 477 (1228)
T ss_pred eechhhhc----ccHHHHHhcCC-------------CcccHHHHHHHHHHccHHHHH---------HhhHH---------
Confidence 99997764 58999998743 224456666666555543322 11221
Q ss_pred cCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHH
Q 007480 202 FLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKK 281 (602)
Q Consensus 202 f~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~ 281 (602)
| ++...+ ++.+ +++++++|+.+++ ++++ ..|.+ +|+||+++.||++-.+.+.+.
T Consensus 478 ---g----------~~T~vg---e~g~-qLSGGQKQRIAIA---Ralv-~~P~I---LLLDEaTSaLD~~se~~Vq~A-- 531 (1228)
T KOG0055|consen 478 ---G----------YDTLVG---ERGV-QLSGGQKQRIAIA---RALV-RNPKI---LLLDEATSALDAESERVVQEA-- 531 (1228)
T ss_pred ---h----------hccccc---CCCC-CCChHHHHHHHHH---HHHH-hCCCE---EEecCcccccCHHHHHHHHHH--
Confidence 1 111112 2233 3899999999998 5554 67888 899999999999985544443
Q ss_pred HHhhhcCCCccceEeeccHHHHHHH-HHHHHHHcCCCCCCCcchHHHH
Q 007480 282 LVASVTRPKIVQGKFLNGNEFVAFM-EQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 282 ~I~~~~~pK~l~g~~ltG~~l~~lv-~~yv~aINsG~vP~~~sl~e~~ 328 (602)
+.+..+-+ +-..+++ +|.++= .+++-.+.+|++...++-.|..
T Consensus 532 -Ld~~~~gr--TTivVaH-RLStIrnaD~I~v~~~G~IvE~G~h~ELi 575 (1228)
T KOG0055|consen 532 -LDKASKGR--TTIVVAH-RLSTIRNADKIAVMEEGKIVEQGTHDELI 575 (1228)
T ss_pred -HHHhhcCC--eEEEEee-ehhhhhccCEEEEEECCEEEEecCHHHHH
Confidence 33332222 3334444 333321 2223334678887777655443
No 309
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.26 E-value=1.5e-11 Score=141.75 Aligned_cols=175 Identities=18% Similarity=0.160 Sum_probs=112.3
Q ss_pred EEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcc
Q 007480 33 IVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNP 108 (602)
Q Consensus 33 lv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~ 108 (602)
++..++.+.++.-..+...+|+++++.+ ++++|+|+||||||||++.|+|. .+++.| |.+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl------------~~~~~G~i~~~g~~ 71 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCL------------DKPTSGTYRVAGQD 71 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCeEEEECCEE
Confidence 4555554333321111245899999888 89999999999999999999998 488999 9999987
Q ss_pred cCccc-------cCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcc
Q 007480 109 VEMEI-------DGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGR 181 (602)
Q Consensus 109 ~~~~~-------~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~ 181 (602)
+.... .+..++++++|..-+ +..++.||+.+.... .......
T Consensus 72 i~~~~~~~~~~~~~~~i~~v~q~~~l~---~~~tv~enl~~~~~~-------~~~~~~~--------------------- 120 (648)
T PRK10535 72 VATLDADALAQLRREHFGFIFQRYHLL---SHLTAAQNVEVPAVY-------AGLERKQ--------------------- 120 (648)
T ss_pred cCcCCHHHHHHHHhccEEEEeCCcccC---CCCCHHHHHHHHHHH-------cCCCHHH---------------------
Confidence 65311 135689999987433 345788887763311 0100000
Q ss_pred cCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhccc
Q 007480 182 VKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKL 260 (602)
Q Consensus 182 ~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L 260 (602)
.++...+.++.++. +..++.+..+|+++++...++ .+++ .+|.+ .+
T Consensus 121 --------------------------~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LA---raL~-~~P~l---Ll 167 (648)
T PRK10535 121 --------------------------RLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIA---RALM-NGGQV---IL 167 (648)
T ss_pred --------------------------HHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHH---HHHh-cCCCE---EE
Confidence 01111222222221 111345667889998888887 5555 56777 78
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhhh
Q 007480 261 CDMKDEELDPIYVKRREQLKKLVASV 286 (602)
Q Consensus 261 ~d~p~~~Ld~~F~e~~~~L~~~I~~~ 286 (602)
.|||+.+||+...+ .+.+++.+.
T Consensus 168 lDEP~~gLD~~s~~---~l~~ll~~l 190 (648)
T PRK10535 168 ADEPTGALDSHSGE---EVMAILHQL 190 (648)
T ss_pred EECCCCCCCHHHHH---HHHHHHHHH
Confidence 99999999999955 555555544
No 310
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.26 E-value=1.5e-11 Score=141.29 Aligned_cols=200 Identities=18% Similarity=0.226 Sum_probs=124.0
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGN 107 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~ 107 (602)
+++.+++.+..+ +...+|+++++.| ++++|+|||||||||||++|+|. .+|+.| |++ +.
T Consensus 318 ~~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~------------~~p~~G~i~~-~~ 380 (635)
T PRK11147 318 IVFEMENVNYQI----DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQ------------LQADSGRIHC-GT 380 (635)
T ss_pred ceEEEeeeEEEE----CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCC------------CCCCCcEEEE-CC
Confidence 356666543222 2346899999988 89999999999999999999998 488999 876 43
Q ss_pred ccCccccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCccc
Q 007480 108 PVEMEIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDV 187 (602)
Q Consensus 108 ~~~~~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~ 187 (602)
+ ..++++.|+...+. +..++.|++.++... +...+ ...
T Consensus 381 ~-------~~i~y~~q~~~~l~--~~~tv~e~l~~~~~~-------~~~~~--~~~------------------------ 418 (635)
T PRK11147 381 K-------LEVAYFDQHRAELD--PEKTVMDNLAEGKQE-------VMVNG--RPR------------------------ 418 (635)
T ss_pred C-------cEEEEEeCcccccC--CCCCHHHHHHhhccc-------ccccc--hHH------------------------
Confidence 2 25788888764443 356788887653210 00000 000
Q ss_pred ccCcccchhhhhhccCCcccHHHHHHHHHHhCCC--CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCC
Q 007480 188 AFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN--DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKD 265 (602)
Q Consensus 188 ~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~--~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~ 265 (602)
.+.+.|..... ...++.+.++|+|++++..++ .+ .+.+|.+ .+.|||+
T Consensus 419 -----------------------~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la---~a-l~~~p~l---LlLDEPt 468 (635)
T PRK11147 419 -----------------------HVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLA---RL-FLKPSNL---LILDEPT 468 (635)
T ss_pred -----------------------HHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHH---HH-HhcCCCE---EEEcCCC
Confidence 01111211111 011456788999999999988 34 4467877 8999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHc-CCCC-CCCcchHHH
Q 007480 266 EELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALN-KGEI-PSTGSLVEV 327 (602)
Q Consensus 266 ~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aIN-sG~v-P~~~sl~e~ 327 (602)
++||+... +.|.+.+.+. .. .-..+++. .+..-+.+.+-.+. +|.+ +..++..+.
T Consensus 469 ~~LD~~~~---~~l~~~l~~~--~~--tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 469 NDLDVETL---ELLEELLDSY--QG--TVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred CCCCHHHH---HHHHHHHHhC--CC--eEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 99999994 4566666543 11 23456653 34444444555555 6765 334554443
No 311
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.26 E-value=8.2e-12 Score=120.21 Aligned_cols=64 Identities=28% Similarity=0.359 Sum_probs=48.8
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEEEe
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSVFY 122 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~vvl 122 (602)
..+++++++.+ ++++|+||||||||||++.|+|. .+++.| |.+.+.++... ..+..+++++
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~------------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGL------------LRPTSGRVRLDGADISQWDPNELGDHVGYLP 82 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhc------------cCCCCCeEEECCEEcccCCHHHHHhheEEEC
Confidence 34889999888 89999999999999999999998 478899 98888665321 1123455555
Q ss_pred ecc
Q 007480 123 LDT 125 (602)
Q Consensus 123 ~Dt 125 (602)
++.
T Consensus 83 q~~ 85 (173)
T cd03246 83 QDD 85 (173)
T ss_pred CCC
Confidence 543
No 312
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.26 E-value=2.9e-11 Score=136.82 Aligned_cols=191 Identities=14% Similarity=0.184 Sum_probs=120.5
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGN 107 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~ 107 (602)
+++.+++.+.++ ....+|+++++.+ ++++|+||||||||||+++|+|. .+++.| |++.+
T Consensus 321 ~~l~~~~l~~~~----~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~------------~~p~~G~i~~~~- 383 (552)
T TIGR03719 321 KVIEAENLSKGF----GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQ------------EQPDSGTIKIGE- 383 (552)
T ss_pred eEEEEeeEEEEE----CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCC------------CCCCCeEEEECC-
Confidence 456666543222 2346899999988 89999999999999999999998 478899 88732
Q ss_pred ccCccccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCccc
Q 007480 108 PVEMEIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDV 187 (602)
Q Consensus 108 ~~~~~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~ 187 (602)
+ ..+++++|+..++. +..++.|++.++... +.... .+
T Consensus 384 ~-------~~i~~v~q~~~~~~--~~~tv~e~l~~~~~~-------~~~~~--~~------------------------- 420 (552)
T TIGR03719 384 T-------VKLAYVDQSRDALD--PNKTVWEEISGGLDI-------IQLGK--RE------------------------- 420 (552)
T ss_pred c-------eEEEEEeCCccccC--CCCcHHHHHHhhccc-------cccCc--ch-------------------------
Confidence 2 25899999864332 356888887764311 00000 00
Q ss_pred ccCcccchhhhhhccCCcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCC
Q 007480 188 AFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKD 265 (602)
Q Consensus 188 ~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~ 265 (602)
...+.+|+.++.. ..++.+.++|+|++++..++ .++ +..|.+ .+.|||+
T Consensus 421 ----------------------~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la---~al-~~~p~l---llLDEPt 471 (552)
T TIGR03719 421 ----------------------VPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLA---KTL-KSGGNV---LLLDEPT 471 (552)
T ss_pred ----------------------HHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHH---HHH-hhCCCE---EEEeCCC
Confidence 0011223322221 12456788999999999998 444 467877 8999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcC-CCC
Q 007480 266 EELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNK-GEI 318 (602)
Q Consensus 266 ~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINs-G~v 318 (602)
+.||+... +.+.+.|.+.. . .-..+|+. .+...+.+.+-.++. |.+
T Consensus 472 ~~LD~~~~---~~l~~~l~~~~--~--~viivsHd~~~~~~~~d~i~~l~~~~~~ 519 (552)
T TIGR03719 472 NDLDVETL---RALEEALLEFA--G--CAVVISHDRWFLDRIATHILAFEGDSHV 519 (552)
T ss_pred CCCCHHHH---HHHHHHHHHCC--C--eEEEEeCCHHHHHHhCCEEEEEECCCeE
Confidence 99999994 55666665542 1 23455553 233333344444564 444
No 313
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.26 E-value=2.7e-11 Score=118.66 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=57.6
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeecc
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLDT 125 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~Dt 125 (602)
..+|+++++.+ ++++|+||||||||||+++|+|.. ..+++.| |.+.++++. ......+++++++.
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~----------~~~~~~G~i~~~g~~~~-~~~~~~i~~~~q~~ 88 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRK----------TAGVITGEILINGRPLD-KNFQRSTGYVEQQD 88 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCC----------cCCCcceEEEECCEehH-HHhhhceEEecccC
Confidence 45899999888 899999999999999999999962 0147899 999887754 22234577787765
Q ss_pred ccccccCCCCchhHHHH
Q 007480 126 EGFESIGKSNVYDDRIF 142 (602)
Q Consensus 126 eG~~~~~~~tv~d~~if 142 (602)
.-+ +..++.|++.+
T Consensus 89 ~~~---~~~tv~~~l~~ 102 (192)
T cd03232 89 VHS---PNLTVREALRF 102 (192)
T ss_pred ccc---cCCcHHHHHHH
Confidence 322 23466666554
No 314
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=1.1e-10 Score=134.27 Aligned_cols=212 Identities=14% Similarity=0.085 Sum_probs=122.1
Q ss_pred ccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEee
Q 007480 48 EGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYL 123 (602)
Q Consensus 48 eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~ 123 (602)
....+|+++++.| ++++|+|||||||||||++|+|. .+|+.| |++.+. ..++++.+
T Consensus 12 g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~------------~~pd~G~I~~~~~--------~~i~~~~q 71 (638)
T PRK10636 12 GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNE------------ISADGGSYTFPGN--------WQLAWVNQ 71 (638)
T ss_pred CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEecCC--------CEEEEEec
Confidence 4456899999998 89999999999999999999998 488999 887653 23566666
Q ss_pred ccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHH-HHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 124 DTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADI-SRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 124 DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l-~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
+.... ..++.+.+.-.... +............ .....+..+... .+-
T Consensus 72 ~~~~~----~~~~~~~v~~~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~----------------------~~~ 119 (638)
T PRK10636 72 ETPAL----PQPALEYVIDGDRE------YRQLEAQLHDANERNDGHAIATIHGK----------------------LDA 119 (638)
T ss_pred CCCCC----CCCHHHHHHHhhHH------HHHHHHHHHHHhccCCHHHHHHHHHH----------------------HHh
Confidence 53221 11222222111100 0000000000000 000000000000 000
Q ss_pred CCcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLK 280 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~ 280 (602)
.++....+.++.+|+.++.. ..++.+.++|+|++++..++ ..++..|.+ .|+|||++.||++.++ .|.
T Consensus 120 ~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA----~aL~~~P~l---LLLDEPtn~LD~~~~~---~L~ 189 (638)
T PRK10636 120 IDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLA----QALICRSDL---LLLDEPTNHLDLDAVI---WLE 189 (638)
T ss_pred cCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHH----HHHccCCCE---EEEcCCCCcCCHHHHH---HHH
Confidence 01223345567777777652 34678899999999999998 444578888 8999999999999954 455
Q ss_pred HHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCC-CCcchH
Q 007480 281 KLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIP-STGSLV 325 (602)
Q Consensus 281 ~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP-~~~sl~ 325 (602)
+++.+. . ..-..+++. .+..-+.+.+-.+++|.+- ..++..
T Consensus 190 ~~L~~~--~--~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~ 232 (638)
T PRK10636 190 KWLKSY--Q--GTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYS 232 (638)
T ss_pred HHHHhC--C--CeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHH
Confidence 555543 1 123455553 3444455555566888763 234433
No 315
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.25 E-value=1.1e-10 Score=134.33 Aligned_cols=231 Identities=16% Similarity=0.191 Sum_probs=127.9
Q ss_pred EEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcc
Q 007480 33 IVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNP 108 (602)
Q Consensus 33 lv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~ 108 (602)
++.+++.+..| +...+|+++++.+ ++++|+|||||||||||++|+|. .+++.| |++.+..
T Consensus 3 ~l~i~~ls~~~----~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~------------~~p~~G~I~~~~~~ 66 (635)
T PRK11147 3 LISIHGAWLSF----SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGE------------VLLDDGRIIYEQDL 66 (635)
T ss_pred EEEEeeEEEEe----CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCC------------CCCCCeEEEeCCCC
Confidence 45565543333 2356899999988 89999999999999999999998 488999 8876421
Q ss_pred cCccccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcc-cchhhh-HHHHHHHHHHHhhhhhhhcccCCcc
Q 007480 109 VEMEIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYN-LPETIR-EADISRLSFAVELAEEFYGRVKGQD 186 (602)
Q Consensus 109 ~~~~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN-~~~~i~-e~~l~~L~~~~~L~~~i~~~~~~e~ 186 (602)
.++++.+++.. . ...++.+....+...+....-.+. ...... ....+.+.....+...+
T Consensus 67 --------~~~~l~q~~~~-~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------- 127 (635)
T PRK11147 67 --------IVARLQQDPPR-N--VEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQL-------- 127 (635)
T ss_pred --------EEEEeccCCCC-C--CCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHH--------
Confidence 23444443211 0 112344443222111000000000 000000 00000000000000000
Q ss_pred cccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCC
Q 007480 187 VAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDE 266 (602)
Q Consensus 187 ~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~ 266 (602)
+..++....+.++.+|+.++.. .++.+.++|+|++++..++ +.++..|.+ .|+|||++
T Consensus 128 --------------~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~LSgGekqRv~LA----raL~~~P~l---LLLDEPt~ 185 (635)
T PRK11147 128 --------------DHHNLWQLENRINEVLAQLGLD-PDAALSSLSGGWLRKAALG----RALVSNPDV---LLLDEPTN 185 (635)
T ss_pred --------------HhcCcccHHHHHHHHHHhCCCC-CCCchhhcCHHHHHHHHHH----HHHhcCCCE---EEEcCCCC
Confidence 0001223345567777776653 3678899999999999998 444577887 89999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCC-CCcchHHH
Q 007480 267 ELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIP-STGSLVEV 327 (602)
Q Consensus 267 ~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP-~~~sl~e~ 327 (602)
.||++.+ +.|.+++.+. +. .-..+++. .+..-+.+.+-.|++|.+- ..++..+.
T Consensus 186 ~LD~~~~---~~L~~~L~~~--~~--tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 186 HLDIETI---EWLEGFLKTF--QG--SIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred ccCHHHH---HHHHHHHHhC--CC--EEEEEeCCHHHHHHhcCeEEEEECCEEEEecCCHHHH
Confidence 9999994 4566666554 11 23455553 3444444555566888763 34554443
No 316
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.25 E-value=2.9e-11 Score=136.93 Aligned_cols=191 Identities=13% Similarity=0.203 Sum_probs=120.0
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGN 107 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~ 107 (602)
+++.+++.+.++ +...+|+++++.+ ++++|+||||||||||+++|+|. .+++.| |++ +.
T Consensus 323 ~~l~~~~l~~~~----~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~------------~~p~~G~i~~-~~ 385 (556)
T PRK11819 323 KVIEAENLSKSF----GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQ------------EQPDSGTIKI-GE 385 (556)
T ss_pred eEEEEEeEEEEE----CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCeEEEE-CC
Confidence 356666543222 2346899999988 89999999999999999999998 488999 887 32
Q ss_pred ccCccccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCccc
Q 007480 108 PVEMEIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDV 187 (602)
Q Consensus 108 ~~~~~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~ 187 (602)
+ ..+++++++...+. +..++.|++.+.... +.... .+.
T Consensus 386 ~-------~~i~~v~q~~~~~~--~~~tv~e~l~~~~~~-------~~~~~--~~~------------------------ 423 (556)
T PRK11819 386 T-------VKLAYVDQSRDALD--PNKTVWEEISGGLDI-------IKVGN--REI------------------------ 423 (556)
T ss_pred c-------eEEEEEeCchhhcC--CCCCHHHHHHhhccc-------ccccc--cHH------------------------
Confidence 2 25899998863332 356888887764311 00000 000
Q ss_pred ccCcccchhhhhhccCCcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCC
Q 007480 188 AFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKD 265 (602)
Q Consensus 188 ~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~ 265 (602)
..+.+|+.++.. ..++.+.++|+|++++..++ .+ .+..|.+ .+.|||+
T Consensus 424 -----------------------~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la---~a-l~~~p~l---llLDEPt 473 (556)
T PRK11819 424 -----------------------PSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLA---KT-LKQGGNV---LLLDEPT 473 (556)
T ss_pred -----------------------HHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHH---HH-HhcCCCE---EEEcCCC
Confidence 011222222221 12456788999999999888 33 4477887 8999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcC-CCC
Q 007480 266 EELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNK-GEI 318 (602)
Q Consensus 266 ~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINs-G~v 318 (602)
++||+... +.+.+.|.+.. . .-..+|+. .+..-+.+.+-.+++ |.+
T Consensus 474 ~~LD~~~~---~~l~~~l~~~~--~--tvi~vtHd~~~~~~~~d~i~~l~~~g~~ 521 (556)
T PRK11819 474 NDLDVETL---RALEEALLEFP--G--CAVVISHDRWFLDRIATHILAFEGDSQV 521 (556)
T ss_pred CCCCHHHH---HHHHHHHHhCC--C--eEEEEECCHHHHHHhCCEEEEEECCCeE
Confidence 99999994 55666665541 2 22445553 233333344444554 544
No 317
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1.1e-11 Score=139.56 Aligned_cols=201 Identities=15% Similarity=0.227 Sum_probs=138.2
Q ss_pred cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEEE
Q 007480 49 GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSVF 121 (602)
Q Consensus 49 al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~vv 121 (602)
...+|+|+++.| ++||+|||+|+||||+.+.|.++ ..||.| |.++|.|+..- ..++++++|
T Consensus 480 ~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rf------------Y~PtsG~IllDG~~i~~~~~~~lr~~Ig~V 547 (716)
T KOG0058|consen 480 DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRF------------YDPTSGRILLDGVPISDINHKYLRRKIGLV 547 (716)
T ss_pred CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHh------------cCCCCCeEEECCeehhhcCHHHHHHHeeee
Confidence 467999999988 99999999999999999999998 489999 99999998642 246889999
Q ss_pred eeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhc
Q 007480 122 YLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRD 201 (602)
Q Consensus 122 l~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRD 201 (602)
=|++..|. .|+.||+.|++ . ..+++++.......+.-+- +.-+|
T Consensus 548 ~QEPvLFs----~sI~eNI~YG~------------~-~~t~e~i~~AAk~ANah~F---------I~~~p---------- 591 (716)
T KOG0058|consen 548 GQEPVLFS----GSIRENIAYGL------------D-NATDEEIEAAAKMANAHEF---------ITNFP---------- 591 (716)
T ss_pred eccceeec----ccHHHHHhcCC------------C-CCCHHHHHHHHHHhChHHH---------HHhCc----------
Confidence 99998885 48999999754 2 4566666665555443222 22233
Q ss_pred cCCcc-cHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHH
Q 007480 202 FLQGK-SVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLK 280 (602)
Q Consensus 202 f~~g~-t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~ 280 (602)
+|- | .++ ++=..++++++|+.+++ ++++ ..|.+ .++||.++.||.+--.. +.
T Consensus 592 --~gY~T----------~VG-----EkG~qLSGGQKQRIAIA---RALl-r~P~V---LILDEATSALDaeSE~l---Vq 644 (716)
T KOG0058|consen 592 --DGYNT----------VVG-----EKGSQLSGGQKQRIAIA---RALL-RNPRV---LILDEATSALDAESEYL---VQ 644 (716)
T ss_pred --ccccc----------ccC-----CccccccchHHHHHHHH---HHHh-cCCCE---EEEechhhhcchhhHHH---HH
Confidence 221 1 011 12246899999999999 6655 78888 89999999999987332 33
Q ss_pred HHHhhhcCCCccceEeeccHHHHHH-HHHHHHHHcCCCCCCCcchHHH
Q 007480 281 KLVASVTRPKIVQGKFLNGNEFVAF-MEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 281 ~~I~~~~~pK~l~g~~ltG~~l~~l-v~~yv~aINsG~vP~~~sl~e~ 327 (602)
+.+.+..+.++ ...+. +.|.+. -.+.+-.+++|.|-..++=.|.
T Consensus 645 ~aL~~~~~~rT--VlvIA-HRLSTV~~Ad~Ivvi~~G~V~E~G~h~eL 689 (716)
T KOG0058|consen 645 EALDRLMQGRT--VLVIA-HRLSTVRHADQIVVIDKGRVVEMGTHDEL 689 (716)
T ss_pred HHHHHhhcCCe--EEEEe-hhhhHhhhccEEEEEcCCeEEecccHHHH
Confidence 44444433322 23333 334332 1224455688888777754443
No 318
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.24 E-value=5.3e-11 Score=117.31 Aligned_cols=142 Identities=19% Similarity=0.174 Sum_probs=94.5
Q ss_pred cccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeeccc
Q 007480 51 ETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLDTE 126 (602)
Q Consensus 51 ~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~Dte 126 (602)
.+|+++++.+ ++++|+||||||||||++.|+|. .++++| |.+.| .++++++++.
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~------------~~~~~G~i~~~g----------~i~~~~q~~~ 76 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGE------------LEKLSGSVSVPG----------SIAYVSQEPW 76 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCc------------CCCCCCeEEEcC----------EEEEEecCch
Confidence 4899999888 89999999999999999999998 478999 88876 5789988875
Q ss_pred cccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCcc
Q 007480 127 GFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGK 206 (602)
Q Consensus 127 G~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~ 206 (602)
.+ ..++.||+.+.... +.+........+++.+.+.. .| .|.
T Consensus 77 l~----~~t~~enl~~~~~~--------------~~~~~~~~~~~~~l~~~~~~---------~~------------~~~ 117 (204)
T cd03250 77 IQ----NGTIRENILFGKPF--------------DEERYEKVIKACALEPDLEI---------LP------------DGD 117 (204)
T ss_pred hc----cCcHHHHhccCCCc--------------CHHHHHHHHHHcCcHHHHHh---------cc------------Ccc
Confidence 43 34888888763211 11122222222222211100 01 000
Q ss_pred cHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHH
Q 007480 207 SVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVK 274 (602)
Q Consensus 207 t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e 274 (602)
. ...++...++++++++...++ ++++ .+|.+ .+.|||++.||++..+
T Consensus 118 ----------~----~~~~~~~~~lS~G~~qrv~la---ral~-~~p~l---lllDEP~~~LD~~~~~ 164 (204)
T cd03250 118 ----------L----TEIGEKGINLSGGQKQRISLA---RAVY-SDADI---YLLDDPLSAVDAHVGR 164 (204)
T ss_pred ----------c----ceecCCCCcCCHHHHHHHHHH---HHHh-cCCCE---EEEeCccccCCHHHHH
Confidence 0 001233567888988888887 4444 67777 8899999999999844
No 319
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.24 E-value=7.6e-11 Score=134.75 Aligned_cols=173 Identities=18% Similarity=0.198 Sum_probs=119.5
Q ss_pred cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeec
Q 007480 49 GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLD 124 (602)
Q Consensus 49 al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~D 124 (602)
..++|++|+... ++.||+||+|||||||||+|+|... + ...++| |.++|++......++..++|-||
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~-~--------~~~~~G~ilvNG~~~~~~~~~~~s~yV~Qd 112 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLN-G--------GLKLSGEILLNGRPRDSRSFRKISGYVQQD 112 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhcccc-C--------CCcceEEEEECCccCchhhhhheeEEEccc
Confidence 467899999776 9999999999999999999999730 0 035889 99999777655566788999999
Q ss_pred cccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCC
Q 007480 125 TEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQ 204 (602)
Q Consensus 125 teG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~ 204 (602)
..-++ .+||+|++.|+...-|.+. ......++.++++...++|.+- +|=
T Consensus 113 D~l~~---~LTV~EtL~f~A~lrlp~~----~~~~~k~~~V~~vi~~LgL~~~----------------------~~t-- 161 (613)
T KOG0061|consen 113 DVLLP---TLTVRETLRFSALLRLPSS----LSKEEKRERVEEVISELGLEKC----------------------ADT-- 161 (613)
T ss_pred ccccc---cccHHHHHHHHHHhcCCCC----CCHHHHHHHHHHHHHHcCChhh----------------------ccc--
Confidence 87664 7899999999876633322 1223333444444444443311 000
Q ss_pred cccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHh
Q 007480 205 GKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVA 284 (602)
Q Consensus 205 g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~ 284 (602)
.++ +.....+|++++.+.+++ |=.+..|.+ .++|||+++||.--.. ++.+.+.
T Consensus 162 -------------~ig----~~~~rgiSGGErkRvsia----~Ell~~P~i---LflDEPTSGLDS~sA~---~vv~~Lk 214 (613)
T KOG0061|consen 162 -------------LIG----NPGIRGLSGGERKRVSIA----LELLTDPSI---LFLDEPTSGLDSFSAL---QVVQLLK 214 (613)
T ss_pred -------------eec----CCCCCccccchhhHHHHH----HHHHcCCCE---EEecCCCCCcchhhHH---HHHHHHH
Confidence 001 111246788888888887 556678888 8999999999998743 4555555
Q ss_pred hhcC
Q 007480 285 SVTR 288 (602)
Q Consensus 285 ~~~~ 288 (602)
++++
T Consensus 215 ~lA~ 218 (613)
T KOG0061|consen 215 RLAR 218 (613)
T ss_pred HHHh
Confidence 5543
No 320
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.23 E-value=3.4e-11 Score=123.20 Aligned_cols=217 Identities=13% Similarity=0.059 Sum_probs=125.0
Q ss_pred ccEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcC
Q 007480 31 FPIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWG 106 (602)
Q Consensus 31 iplv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~ 106 (602)
.+.+..++.+ +.+......+|+++++.+ ++++|+|+||||||||+++|+|. .+++.| |.+.+
T Consensus 17 ~~~i~~~~l~--~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~i~g 82 (257)
T cd03288 17 GGEIKIHDLC--VRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRM------------VDIFDGKIVIDG 82 (257)
T ss_pred CceEEEEEEE--EEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcc------------cCCCCCeEEECC
Confidence 3455565433 333322245899999988 89999999999999999999998 488999 99998
Q ss_pred cccCcc---ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccC
Q 007480 107 NPVEME---IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVK 183 (602)
Q Consensus 107 ~~~~~~---~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~ 183 (602)
.++... ..+..+++++++...+. .++.|++.. .+ ......+..+....++.+.+..
T Consensus 83 ~~i~~~~~~~~~~~i~~v~q~~~l~~----~tv~~nl~~-----------~~---~~~~~~~~~~l~~~~l~~~~~~--- 141 (257)
T cd03288 83 IDISKLPLHTLRSRLSIILQDPILFS----GSIRFNLDP-----------EC---KCTDDRLWEALEIAQLKNMVKS--- 141 (257)
T ss_pred EEhhhCCHHHHhhhEEEECCCCcccc----cHHHHhcCc-----------CC---CCCHHHHHHHHHHhCcHHHHhh---
Confidence 876421 12456899988864332 255554321 00 0011122222222222111100
Q ss_pred CcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCC
Q 007480 184 GQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDM 263 (602)
Q Consensus 184 ~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~ 263 (602)
.| .|. + ...+.....+++++++...++ .+++ .+|.+ .+.|+
T Consensus 142 ------~~------------~~l----------~----~~~~~~~~~LS~G~~qrl~la---ral~-~~p~l---lllDE 182 (257)
T cd03288 142 ------LP------------GGL----------D----AVVTEGGENFSVGQRQLFCLA---RAFV-RKSSI---LIMDE 182 (257)
T ss_pred ------cc------------ccc----------C----cEeccCCCcCCHHHHHHHHHH---HHHh-cCCCE---EEEeC
Confidence 00 000 0 001234567889999888887 4444 67777 88999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHHHHHHHHHHHHHHcCCCCCCCcchHH
Q 007480 264 KDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNEFVAFMEQILEALNKGEIPSTGSLVE 326 (602)
Q Consensus 264 p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aINsG~vP~~~sl~e 326 (602)
|++.||+... +.+.+.+.+... ...-..+++..-.....+.+-.+++|.+-..++..+
T Consensus 183 Pt~gLD~~~~---~~l~~~l~~~~~--~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~ 240 (257)
T cd03288 183 ATASIDMATE---NILQKVVMTAFA--DRTVVTIAHRVSTILDADLVLVLSRGILVECDTPEN 240 (257)
T ss_pred CccCCCHHHH---HHHHHHHHHhcC--CCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999984 456666655422 222234444322111233444457787755555443
No 321
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.23 E-value=3.6e-11 Score=149.58 Aligned_cols=209 Identities=16% Similarity=0.162 Sum_probs=141.4
Q ss_pred eEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc---ccc
Q 007480 42 KLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM---EID 114 (602)
Q Consensus 42 ~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~---~~~ 114 (602)
.+++.++...+|+++++.| +.|||+|++|||||||++.|+|+. + ++| |.++|.++.. ...
T Consensus 1224 s~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~------------~-~~G~I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271 1224 TAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL------------S-TEGEIQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred EEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc------------C-CCcEEEECCEEcccCCHHHH
Confidence 4555555567999999988 999999999999999999999983 4 789 9999998763 224
Q ss_pred CcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccc
Q 007480 115 GSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKL 194 (602)
Q Consensus 115 ~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~f 194 (602)
+..++++.||+..|. +|+++|+.. + +..+++++.+.+..+++.+.+... |
T Consensus 1291 R~~is~IpQdp~LF~----GTIR~NLdp-----------~---~~~tdeei~~aL~~~~L~~~i~~l---------p--- 1340 (1490)
T TIGR01271 1291 RKAFGVIPQKVFIFS----GTFRKNLDP-----------Y---EQWSDEEIWKVAEEVGLKSVIEQF---------P--- 1340 (1490)
T ss_pred HhceEEEeCCCccCc----cCHHHHhCc-----------c---cCCCHHHHHHHHHHCCCHHHHHhC---------c---
Confidence 678999999998874 489998842 1 234566677777777765544211 1
Q ss_pred hhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHH
Q 007480 195 VWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVK 274 (602)
Q Consensus 195 lw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e 274 (602)
+|. +..+ . +.-..+|+|++|+..++ ++++ .+|.+ .+.||+++.||++.-
T Consensus 1341 ---------~GL------dt~v---~-----e~G~nLSgGQrQrL~LA---RALL-r~~~I---LlLDEaTS~lD~~Te- 1389 (1490)
T TIGR01271 1341 ---------DKL------DFVL---V-----DGGYVLSNGHKQLMCLA---RSIL-SKAKI---LLLDEPSAHLDPVTL- 1389 (1490)
T ss_pred ---------ccc------cccc---c-----cCCCcCCHHHHHHHHHH---HHHh-CCCCE---EEEeCCcccCCHHHH-
Confidence 110 0011 1 11235899999999988 5554 66666 789999999999983
Q ss_pred HHHHHHHHHhhhcCCCccceEeeccHHHHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 275 RREQLKKLVASVTRPKIVQGKFLNGNEFVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 275 ~~~~L~~~I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
..+.+.|.+..+.++ -..++++.-.-.-.+.+-.+.+|.+-..++..+..
T Consensus 1390 --~~I~~~L~~~~~~~T--vI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1390 --QIIRKTLKQSFSNCT--VILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred --HHHHHHHHHHcCCCE--EEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 345556655543333 35666643211122334455788887777766554
No 322
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.23 E-value=3.4e-11 Score=130.77 Aligned_cols=199 Identities=18% Similarity=0.202 Sum_probs=135.1
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc---cccCcceEEEe
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM---EIDGSRTSVFY 122 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~---~~~~~~~~vvl 122 (602)
..+|+++++.+ +.++|+||+|||||||.+.|.|.. +|+.| +.+++.++.. +..++.++|+.
T Consensus 349 ~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w------------~p~~G~VRLDga~l~qWd~e~lG~hiGYLP 416 (580)
T COG4618 349 KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW------------PPTSGSVRLDGADLRQWDREQLGRHIGYLP 416 (580)
T ss_pred CcceecceeEecCCceEEEECCCCccHHHHHHHHHccc------------ccCCCcEEecchhhhcCCHHHhccccCcCc
Confidence 46899999988 999999999999999999999984 89999 9999988764 23578999999
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
||.|.|+ +|+.+|+.- .....+.+.+-+.....+.-|.|- -.|
T Consensus 417 QdVeLF~----GTIaeNIaR-------------f~~~~d~~kIieAA~lAgvHelIl---------~lP----------- 459 (580)
T COG4618 417 QDVELFD----GTIAENIAR-------------FGEEADPEKVIEAARLAGVHELIL---------RLP----------- 459 (580)
T ss_pred ccceecC----CcHHHHHHh-------------ccccCCHHHHHHHHHHcChHHHHH---------hCc-----------
Confidence 9999995 488888753 111233332322222222222211 112
Q ss_pred CCcc-cHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHH
Q 007480 203 LQGK-SVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKK 281 (602)
Q Consensus 203 ~~g~-t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~ 281 (602)
+|- | .+ .+.-..+|++++|+..++ +|+- -.|.+ ..+|||.+.||.+-- ..|.+
T Consensus 460 -~GYdT----------~i-----G~~G~~LSgGQRQRIaLA---RAlY-G~P~l---vVLDEPNsNLD~~GE---~AL~~ 513 (580)
T COG4618 460 -QGYDT----------RI-----GEGGATLSGGQRQRIALA---RALY-GDPFL---VVLDEPNSNLDSEGE---AALAA 513 (580)
T ss_pred -CCccC----------cc-----CCCCCCCCchHHHHHHHH---HHHc-CCCcE---EEecCCCCCcchhHH---HHHHH
Confidence 110 0 00 122246899999998887 5554 67877 789999999999873 34555
Q ss_pred HHhhhcCCCccceEeeccHHHHHHHHHHHHHHcCCCCCCCcch
Q 007480 282 LVASVTRPKIVQGKFLNGNEFVAFMEQILEALNKGEIPSTGSL 324 (602)
Q Consensus 282 ~I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aINsG~vP~~~sl 324 (602)
-|.+. |.+......++++--+--..+++-.+++|.+-..+.=
T Consensus 514 Ai~~~-k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r 555 (580)
T COG4618 514 AILAA-KARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPR 555 (580)
T ss_pred HHHHH-HHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCH
Confidence 55543 2334445678886555556678888899988665543
No 323
>PTZ00243 ABC transporter; Provisional
Probab=99.23 E-value=1.4e-11 Score=153.49 Aligned_cols=210 Identities=19% Similarity=0.160 Sum_probs=139.3
Q ss_pred EEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc---cccC
Q 007480 43 LRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM---EIDG 115 (602)
Q Consensus 43 l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~---~~~~ 115 (602)
|++.++...+|+++++.| +.|||+|++|||||||++.|+|+ ..+++| |.++|.++.. ...+
T Consensus 1316 f~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl------------~~p~~G~I~IDG~di~~i~l~~LR 1383 (1560)
T PTZ00243 1316 MRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRM------------VEVCGGEIRVNGREIGAYGLRELR 1383 (1560)
T ss_pred EEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEECCEEcccCCHHHHH
Confidence 444443345899999988 99999999999999999999998 478899 9999998763 2246
Q ss_pred cceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccch
Q 007480 116 SRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLV 195 (602)
Q Consensus 116 ~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~fl 195 (602)
+.++++.||+..|. +|++||+.. + +..+++++.+....+++.+.+.. .|
T Consensus 1384 ~~I~iVpQdp~LF~----gTIreNIdp-----------~---~~~sdeeI~~Al~~a~l~~~I~~---------lp---- 1432 (1560)
T PTZ00243 1384 RQFSMIPQDPVLFD----GTVRQNVDP-----------F---LEASSAEVWAALELVGLRERVAS---------ES---- 1432 (1560)
T ss_pred hcceEECCCCcccc----ccHHHHhCc-----------c---cCCCHHHHHHHHHHCCChHHHhh---------Cc----
Confidence 78999999998774 489999842 1 13455667777776666554321 12
Q ss_pred hhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHH
Q 007480 196 WLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKR 275 (602)
Q Consensus 196 w~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~ 275 (602)
+|. +.. ++ ..-..+|+|++|+..++ ++++-..|.+ .+.||+++.||++.-+
T Consensus 1433 --------~Gl------dt~---vg-----e~G~nLSgGQrQrLaLA---RALL~~~~~I---LlLDEATSaLD~~te~- 1483 (1560)
T PTZ00243 1433 --------EGI------DSR---VL-----EGGSNYSVGQRQLMCMA---RALLKKGSGF---ILMDEATANIDPALDR- 1483 (1560)
T ss_pred --------ccc------ccc---cc-----CCcCcCCHHHHHHHHHH---HHHhcCCCCE---EEEeCCCccCCHHHHH-
Confidence 111 000 11 11246899999999998 5655223566 7899999999999854
Q ss_pred HHHHHHHHhhhcCCCccceEeeccHHHHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 276 REQLKKLVASVTRPKIVQGKFLNGNEFVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 276 ~~~L~~~I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
.+.+.|.+..+.++ -..++++.-.-.-.+.+-.+++|.+-..++..+..
T Consensus 1484 --~Iq~~L~~~~~~~T--vI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1484 --QIQATVMSAFSAYT--VITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred --HHHHHHHHHCCCCE--EEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 34555555443333 34566543111112333345788887777766554
No 324
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=4.5e-11 Score=118.93 Aligned_cols=197 Identities=15% Similarity=0.144 Sum_probs=118.4
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc----cCcceEEE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI----DGSRTSVF 121 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~----~~~~~~vv 121 (602)
.++|+++|+.| ++.+|+||||||||||.+.|+|.. ....|+| |.+.|+++..-. .+..+.+-
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p----------~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLa 86 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP----------KYEVTEGEILFDGEDILELSPDERARAGIFLA 86 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCC----------CceEecceEEECCcccccCCHhHHHhcCCEEe
Confidence 58999999999 999999999999999999999962 2357999 999999886421 34567778
Q ss_pred eeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhh---h---HHHHHHHHHHHhhhhhhhcccCCcccccCcccch
Q 007480 122 YLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETI---R---EADISRLSFAVELAEEFYGRVKGQDVAFEPAKLV 195 (602)
Q Consensus 122 l~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i---~---e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~fl 195 (602)
+|.+.-+..+ ++.|-+..+ +|..... . .+.+......+++ .|
T Consensus 87 fQ~P~ei~GV---~~~~fLr~a----------~n~~~~~~~~~~~~~~~~~e~~~~l~~---------------~~---- 134 (251)
T COG0396 87 FQYPVEIPGV---TNSDFLRAA----------MNARRGARGILPEFIKELKEKAELLGL---------------DE---- 134 (251)
T ss_pred ecCCccCCCe---eHHHHHHHH----------HHhhhccccccHHHHHHHHHHHHHcCC---------------CH----
Confidence 8887665433 333322222 2221111 0 1111111111111 11
Q ss_pred hhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHH
Q 007480 196 WLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKR 275 (602)
Q Consensus 196 w~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~ 275 (602)
+|++..+ -..+|++.+.+..+. -..+-.|.+ .++|||+++||-+-.+.
T Consensus 135 --------------~~l~R~v-----------N~GFSGGEkKR~Eil----Q~~~lePkl---~ILDE~DSGLDIdalk~ 182 (251)
T COG0396 135 --------------EFLERYV-----------NEGFSGGEKKRNEIL----QLLLLEPKL---AILDEPDSGLDIDALKI 182 (251)
T ss_pred --------------HHhhccc-----------CCCcCcchHHHHHHH----HHHhcCCCE---EEecCCCcCccHHHHHH
Confidence 1111111 112444544444443 222457887 78999999999998554
Q ss_pred HHHHHHHHhhhcCCCccceEeecc-HHHHHHHH-HHHHHHcCCCCCCCcch
Q 007480 276 REQLKKLVASVTRPKIVQGKFLNG-NEFVAFME-QILEALNKGEIPSTGSL 324 (602)
Q Consensus 276 ~~~L~~~I~~~~~pK~l~g~~ltG-~~l~~lv~-~yv~aINsG~vP~~~sl 324 (602)
+ .+-|..+..+ ...-..+|+ ..+.++++ ++|..+-+|.|.+.+..
T Consensus 183 V---~~~i~~lr~~-~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~ 229 (251)
T COG0396 183 V---AEGINALREE-GRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP 229 (251)
T ss_pred H---HHHHHHHhcC-CCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH
Confidence 4 4444444333 334467887 55666665 77788888988777643
No 325
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.22 E-value=2e-11 Score=150.84 Aligned_cols=177 Identities=15% Similarity=0.074 Sum_probs=110.0
Q ss_pred cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc--ccCcceEEEe
Q 007480 49 GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME--IDGSRTSVFY 122 (602)
Q Consensus 49 al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~--~~~~~~~vvl 122 (602)
...+|+++++.+ ++++|+||||||||||||.|+|.. .++ .++++| |.+.|.++... ..+..++++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~--~~~------~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~ 144 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNT--DGF------HIGVEGVITYDGITPEEIKKHYRGDVVYNA 144 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCC--CCC------CCCceeEEEECCEehHHHHhhcCceeEEec
Confidence 356899999888 999999999999999999999972 111 246889 99999876421 1235689999
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhh-hHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETI-READISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRD 201 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i-~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRD 201 (602)
|+...+ +..|++|++.|++...+......+..... .+...+.+...++|.+...
T Consensus 145 Q~d~~~---~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~---------------------- 199 (1394)
T TIGR00956 145 ETDVHF---PHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRN---------------------- 199 (1394)
T ss_pred cccccC---CCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccC----------------------
Confidence 986444 46799999999764310000000000000 0000111222222211000
Q ss_pred cCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHH
Q 007480 202 FLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKK 281 (602)
Q Consensus 202 f~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~ 281 (602)
..-+++.+..+|+|++++..++ +.++..|.+ .+.|||+++||+... .++.+
T Consensus 200 -------------------t~vg~~~~~~LSGGerkRvsIA----~aL~~~p~v---lllDEPTsgLD~~~~---~~i~~ 250 (1394)
T TIGR00956 200 -------------------TKVGNDFVRGVSGGERKRVSIA----EASLGGAKI---QCWDNATRGLDSATA---LEFIR 250 (1394)
T ss_pred -------------------ceeCCCcCCCCCcccchHHHHH----HHHHhCCCE---EEEeCCCCCcCHHHH---HHHHH
Confidence 0001234567899999998888 444467777 889999999999984 45556
Q ss_pred HHhhhc
Q 007480 282 LVASVT 287 (602)
Q Consensus 282 ~I~~~~ 287 (602)
.+.++.
T Consensus 251 ~L~~la 256 (1394)
T TIGR00956 251 ALKTSA 256 (1394)
T ss_pred HHHHHH
Confidence 665554
No 326
>PRK13409 putative ATPase RIL; Provisional
Probab=99.22 E-value=4.5e-11 Score=136.14 Aligned_cols=184 Identities=14% Similarity=0.083 Sum_probs=116.3
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGN 107 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~ 107 (602)
+++.+++.+.+ ++. ..|+++++.+ ++++|+||||||||||+++|+|. .+++.| |++.
T Consensus 339 ~~l~~~~ls~~--~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl------------~~p~~G~I~~~-- 399 (590)
T PRK13409 339 TLVEYPDLTKK--LGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGV------------LKPDEGEVDPE-- 399 (590)
T ss_pred eEEEEcceEEE--ECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEEe--
Confidence 46666654432 322 2378888777 89999999999999999999998 488999 7653
Q ss_pred ccCccccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCccc
Q 007480 108 PVEMEIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDV 187 (602)
Q Consensus 108 ~~~~~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~ 187 (602)
..++++.|+.... ...|+.|++.+.... +. .+...
T Consensus 400 --------~~i~y~~Q~~~~~---~~~tv~e~l~~~~~~-------~~-----~~~~~---------------------- 434 (590)
T PRK13409 400 --------LKISYKPQYIKPD---YDGTVEDLLRSITDD-------LG-----SSYYK---------------------- 434 (590)
T ss_pred --------eeEEEecccccCC---CCCcHHHHHHHHhhh-------cC-----hHHHH----------------------
Confidence 1478888875432 356888876653211 00 00011
Q ss_pred ccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCC
Q 007480 188 AFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDE 266 (602)
Q Consensus 188 ~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~ 266 (602)
+++|+.++. ...++.+.++|++++++..++ .++. ..|.+ .+.|||++
T Consensus 435 -------------------------~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiA---raL~-~~p~l---lLLDEPt~ 482 (590)
T PRK13409 435 -------------------------SEIIKPLQLERLLDKNVKDLSGGELQRVAIA---ACLS-RDADL---YLLDEPSA 482 (590)
T ss_pred -------------------------HHHHHHCCCHHHHhCCcccCCHHHHHHHHHH---HHHh-cCCCE---EEEeCCcc
Confidence 112222211 111456788999999999998 5554 67777 88999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHc
Q 007480 267 ELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALN 314 (602)
Q Consensus 267 ~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aIN 314 (602)
.||++.. ..+.+.|.+..+.....-..+++. .++..+.+.+-.++
T Consensus 483 ~LD~~~~---~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~ 528 (590)
T PRK13409 483 HLDVEQR---LAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE 528 (590)
T ss_pred CCCHHHH---HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc
Confidence 9999994 455555655543323333456663 34444444444454
No 327
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.22 E-value=1.4e-11 Score=153.62 Aligned_cols=210 Identities=13% Similarity=0.101 Sum_probs=139.9
Q ss_pred eEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc---ccc
Q 007480 42 KLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM---EID 114 (602)
Q Consensus 42 ~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~---~~~ 114 (602)
.+++.++...+|+++++.| +.|||+|++|||||||++.|+|+ ..+++| |.++|.++.. ..-
T Consensus 1291 sf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl------------~~~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957 1291 CLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRI------------NESAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred EEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------ccCCCCeEEECCEEccccCHHHH
Confidence 4555444446999999988 99999999999999999999998 478999 9999998864 224
Q ss_pred CcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccc
Q 007480 115 GSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKL 194 (602)
Q Consensus 115 ~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~f 194 (602)
+..++++.||+..|. +|++||+.. + +..+++++.+....+++.+.+.. .|
T Consensus 1359 R~~i~iVpQdp~LF~----gTIr~NLdp-----------~---~~~sdeei~~al~~a~l~~~I~~---------lp--- 1408 (1522)
T TIGR00957 1359 RFKITIIPQDPVLFS----GSLRMNLDP-----------F---SQYSDEEVWWALELAHLKTFVSA---------LP--- 1408 (1522)
T ss_pred HhcCeEECCCCcccC----ccHHHHcCc-----------c---cCCCHHHHHHHHHHcCcHHHHhh---------Cc---
Confidence 678999999998884 488888742 1 13455666666666665443321 12
Q ss_pred hhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHH
Q 007480 195 VWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVK 274 (602)
Q Consensus 195 lw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e 274 (602)
+|. +.. ++ +.-..+|+|++|+..++ ++++ ..|.+ .+.||+++.||++.-+
T Consensus 1409 ---------~GL------dt~---v~-----e~G~~LSgGQrQrl~LA---RALL-r~~~I---LiLDEaTSalD~~Te~ 1458 (1522)
T TIGR00957 1409 ---------DKL------DHE---CA-----EGGENLSVGQRQLVCLA---RALL-RKTKI---LVLDEATAAVDLETDN 1458 (1522)
T ss_pred ---------cCC------Cce---ec-----CCCCcCCHHHHHHHHHH---HHHH-cCCCE---EEEECCcccCCHHHHH
Confidence 110 000 11 11246899999999998 5554 66776 7899999999999743
Q ss_pred HHHHHHHHHhhhcCCCccceEeeccHHHHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 275 RREQLKKLVASVTRPKIVQGKFLNGNEFVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 275 ~~~~L~~~I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
.+.+.|.+..+.++ -..++++.-.-.-.+.+-.+.+|.+-..++..+..
T Consensus 1459 ---~Iq~~l~~~~~~~T--vI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl 1507 (1522)
T TIGR00957 1459 ---LIQSTIRTQFEDCT--VLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLL 1507 (1522)
T ss_pred ---HHHHHHHHHcCCCE--EEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 44555555443333 34566543111112233345788887777766554
No 328
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=3.2e-11 Score=132.01 Aligned_cols=201 Identities=17% Similarity=0.240 Sum_probs=126.4
Q ss_pred cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc---cccCcceEEE
Q 007480 49 GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM---EIDGSRTSVF 121 (602)
Q Consensus 49 al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~---~~~~~~~~vv 121 (602)
..++|+++++.| +-|||+|+|||||||++|.|++.. . .+| |.++|.++.. ...+.-+++|
T Consensus 364 k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~------------d-~sG~I~IdG~dik~~~~~SlR~~Ig~V 430 (591)
T KOG0057|consen 364 KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF------------D-YSGSILIDGQDIKEVSLESLRQSIGVV 430 (591)
T ss_pred CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh------------c-cCCcEEECCeeHhhhChHHhhhheeEe
Confidence 455999999999 999999999999999999999983 4 899 9999998864 2356789999
Q ss_pred eeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhc
Q 007480 122 YLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRD 201 (602)
Q Consensus 122 l~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRD 201 (602)
+||+..|++ |+..|+.++ .. ....+++-+.....++.+.+. -.|.
T Consensus 431 PQd~~LFnd----TIl~NI~YG------------n~-sas~eeV~e~~k~a~~hd~i~---------~l~~--------- 475 (591)
T KOG0057|consen 431 PQDSVLFND----TILYNIKYG------------NP-SASDEEVVEACKRAGLHDVIS---------RLPD--------- 475 (591)
T ss_pred CCcccccch----hHHHHhhcC------------CC-CcCHHHHHHHHHHcCcHHHHH---------hccc---------
Confidence 999998863 555454431 11 122344444444444433321 1221
Q ss_pred cCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHH
Q 007480 202 FLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKK 281 (602)
Q Consensus 202 f~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~ 281 (602)
| |-. .++ +.-..+|+|++|..+++ +|++ ..|.+ .++||+++.||.+.- .++.+
T Consensus 476 ---G-----Y~T----~VG-----erG~~LSGGekQrvsla---Ra~l-Kda~I---l~~DEaTS~LD~~TE---~~i~~ 528 (591)
T KOG0057|consen 476 ---G-----YQT----LVG-----ERGLMLSGGEKQRVSLA---RAFL-KDAPI---LLLDEATSALDSETE---REILD 528 (591)
T ss_pred ---c-----chh----hHh-----hcccccccchHHHHHHH---HHHh-cCCCe---EEecCcccccchhhH---HHHHH
Confidence 1 000 011 11246789999999998 7876 55555 689999999999873 35566
Q ss_pred HHhhhcCCCccceEeeccHHHHHHHHHH--HHHHcCCCCCCCcchHHHH
Q 007480 282 LVASVTRPKIVQGKFLNGNEFVAFMEQI--LEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 282 ~I~~~~~pK~l~g~~ltG~~l~~lv~~y--v~aINsG~vP~~~sl~e~~ 328 (602)
.|.+....||.- .+-+.. .+++.+ +-.+.+|.+-..++-.|..
T Consensus 529 ~i~~~~~~rTvI--~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~ell 573 (591)
T KOG0057|consen 529 MIMDVMSGRTVI--MIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSELL 573 (591)
T ss_pred HHHHhcCCCeEE--EEEecc--hhHhcCCEEEEEECCeeEEeccHHHHh
Confidence 666554445432 222211 122222 1122567776666655443
No 329
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.21 E-value=4.8e-11 Score=129.44 Aligned_cols=204 Identities=15% Similarity=0.129 Sum_probs=128.4
Q ss_pred EEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcc
Q 007480 33 IVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNP 108 (602)
Q Consensus 33 lv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~ 108 (602)
.+...+-+..| .+..+++++|+.| +|-+++|.||+|||||||+|.|. ..||+| |.++|++
T Consensus 4 ~l~~~~itK~f----~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~------------~~P~~GeI~v~G~~ 67 (501)
T COG3845 4 ALEMRGITKRF----PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGL------------YQPDSGEIRVDGKE 67 (501)
T ss_pred eEEEeccEEEc----CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCc------------ccCCcceEEECCEE
Confidence 34455544444 2666889999988 99999999999999999999998 589999 9999998
Q ss_pred cCccc----cCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCC
Q 007480 109 VEMEI----DGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKG 184 (602)
Q Consensus 109 ~~~~~----~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~ 184 (602)
+.... .+..+++|+|....+ |..|+.||++.+.... .. -.....
T Consensus 68 v~~~sP~dA~~~GIGMVhQHF~Lv---~~lTV~ENiiLg~e~~--~~--~~~~~~------------------------- 115 (501)
T COG3845 68 VRIKSPRDAIRLGIGMVHQHFMLV---PTLTVAENIILGLEPS--KG--GLIDRR------------------------- 115 (501)
T ss_pred eccCCHHHHHHcCCcEEeeccccc---cccchhhhhhhcCccc--cc--cccCHH-------------------------
Confidence 87532 356789999886544 5789999998765320 00 000011
Q ss_pred cccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCC-CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCC
Q 007480 185 QDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPND-KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDM 263 (602)
Q Consensus 185 e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~-~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~ 263 (602)
...+.++..-+..+.+ +-+..+.+++-+.+|...+- +|. +..|.+ .++||
T Consensus 116 ----------------------~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIl---KaL-yr~a~i---LILDE 166 (501)
T COG3845 116 ----------------------QARARIKELSERYGLPVDPDAKVADLSVGEQQRVEIL---KAL-YRGARL---LILDE 166 (501)
T ss_pred ----------------------HHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHH---HHH-hcCCCE---EEEcC
Confidence 1122222222222210 11345566666666665544 222 245555 67899
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCC
Q 007480 264 KDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGE 317 (602)
Q Consensus 264 p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~ 317 (602)
|++-|.|.- +++|-+.+.++. .....-..+|+.- -+.-+.+.+..+..|+
T Consensus 167 PTaVLTP~E---~~~lf~~l~~l~-~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gk 217 (501)
T COG3845 167 PTAVLTPQE---ADELFEILRRLA-AEGKTIIFITHKLKEVMAIADRVTVLRRGK 217 (501)
T ss_pred CcccCCHHH---HHHHHHHHHHHH-HCCCEEEEEeccHHHHHHhhCeeEEEeCCe
Confidence 999999987 567777776553 2333445677642 1223455566667775
No 330
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.20 E-value=5.4e-11 Score=114.34 Aligned_cols=47 Identities=36% Similarity=0.543 Sum_probs=42.2
Q ss_pred cccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCccc
Q 007480 51 ETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPV 109 (602)
Q Consensus 51 ~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~ 109 (602)
.+++++++.+ ++++|+||||+|||||++.|+|. .+++.| |++.+.++
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~------------~~~~~G~i~~~g~~~ 66 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL------------YDPTSGEILIDGVDL 66 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcC------------CCCCCCEEEECCEEh
Confidence 5899999888 89999999999999999999998 478899 98888654
No 331
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.19 E-value=3.3e-10 Score=134.46 Aligned_cols=165 Identities=14% Similarity=0.155 Sum_probs=110.4
Q ss_pred ccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEee
Q 007480 48 EGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYL 123 (602)
Q Consensus 48 eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~ 123 (602)
+-+++|++++.-+ ...|++|++|+|||||||.|+|.. + .-..+| |.+.|.|.......+..+++-|
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~--t--------~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ 871 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRK--T--------GGYIEGDILISGFPKDQETFARVSGYVEQ 871 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCc--c--------cceEEeEEEECCeeCchhhhccccceeec
Confidence 5678899998655 789999999999999999999962 1 123567 9999999875556677899988
Q ss_pred ccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccC
Q 007480 124 DTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFL 203 (602)
Q Consensus 124 DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~ 203 (602)
+.--. +..||+|.+.|+..+-++. ...
T Consensus 872 ~DiH~---~~~TVrESL~fSA~LRlp~-------~v~------------------------------------------- 898 (1391)
T KOG0065|consen 872 QDIHS---PELTVRESLRFSAALRLPK-------EVS------------------------------------------- 898 (1391)
T ss_pred ccccC---cccchHHHHHHHHHHcCCC-------cCC-------------------------------------------
Confidence 76433 5789999999987662110 000
Q ss_pred CcccHHHHHHHHHHhCCCC-CC-----CCCchhhhhHHHHHHhhcCCCcEEEccCc-cchhcccCCCCCCCCCHHHHHHH
Q 007480 204 QGKSVQEMVHDALQRVPND-KG-----DKNIDMVNQIRNSLAIMGDNSTAFSLPQP-HLLRTKLCDMKDEELDPIYVKRR 276 (602)
Q Consensus 204 ~g~t~~eyLe~aL~~~~~~-~~-----~~~i~~ln~~r~~i~~~f~~~~cf~L~~P-~~~~~~L~d~p~~~Ld~~F~e~~ 276 (602)
..+-.+|+|+.++.++.. .. ... ..+|.-++.+..++ +=+...| .+ .+.|||+++||.+..
T Consensus 899 -~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIg----VELvA~P~~i---lFLDEPTSGLDsqaA--- 966 (1391)
T KOG0065|consen 899 -DEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIG----VELVANPSSI---LFLDEPTSGLDSQAA--- 966 (1391)
T ss_pred -HHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEE----EEEecCCcee---EEecCCCCCccHHHH---
Confidence 112235555555544431 01 111 34677777776766 5556788 55 678999999999873
Q ss_pred HHHHHHHhhhc
Q 007480 277 EQLKKLVASVT 287 (602)
Q Consensus 277 ~~L~~~I~~~~ 287 (602)
.-+++.+.+++
T Consensus 967 ~~i~~~lrkla 977 (1391)
T KOG0065|consen 967 AIVMRFLRKLA 977 (1391)
T ss_pred HHHHHHHHHHH
Confidence 34444454443
No 332
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.19 E-value=2.7e-11 Score=150.02 Aligned_cols=197 Identities=17% Similarity=0.137 Sum_probs=129.5
Q ss_pred eEEecc-ccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCC------------------------------
Q 007480 42 KLRLSR-EGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDE------------------------------ 87 (602)
Q Consensus 42 ~l~~~~-eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~------------------------------ 87 (602)
.|.+.. ....+|+++++.+ +.++|+|++|||||||++.|+|+..-.
T Consensus 1172 sF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1251 (1466)
T PTZ00265 1172 NFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVG 1251 (1466)
T ss_pred EEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccc
Confidence 455532 2346999999988 899999999999999999999985210
Q ss_pred -----------CCcccc-cccCCCcc-eEEcCcccCc---cccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhh
Q 007480 88 -----------GFGVGH-MRDTKTKG-IWVWGNPVEM---EIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSV 151 (602)
Q Consensus 88 -----------gF~vg~-t~~~~TkG-Iwi~~~~~~~---~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~ 151 (602)
++..++ ++..+++| |.++|.++.. ...+..+++|.||+..|. +|++||+.++.
T Consensus 1252 ~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~----gTIreNI~~g~------- 1320 (1466)
T PTZ00265 1252 MKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN----MSIYENIKFGK------- 1320 (1466)
T ss_pred cccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc----ccHHHHHhcCC-------
Confidence 111111 12235799 9999998753 224678999999998874 59999998742
Q ss_pred hhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCcc-cHHHHHHHHHHhCCCCCCCCCchh
Q 007480 152 LIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGK-SVQEMVHDALQRVPNDKGDKNIDM 230 (602)
Q Consensus 152 ~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~-t~~eyLe~aL~~~~~~~~~~~i~~ 230 (602)
...+++++.+.....++.+.+. -.|. |- | .++ +.-..
T Consensus 1321 ------~~at~eeI~~A~k~A~l~~fI~---------~LP~------------GydT----------~VG-----e~G~~ 1358 (1466)
T PTZ00265 1321 ------EDATREDVKRACKFAAIDEFIE---------SLPN------------KYDT----------NVG-----PYGKS 1358 (1466)
T ss_pred ------CCCCHHHHHHHHHHcCCHHHHH---------hCcc------------ccCC----------ccC-----CCCCc
Confidence 1234556666666665544331 1231 11 0 011 12246
Q ss_pred hhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH
Q 007480 231 VNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE 301 (602)
Q Consensus 231 ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~ 301 (602)
+|+|++|+.+++ ++++ ..|.+ .++||+++.||++.-+ .+.+.|.+....+..+-..++++.
T Consensus 1359 LSGGQkQRIaIA---RALl-r~p~I---LLLDEaTSaLD~~sE~---~I~~~L~~~~~~~~~TvIiIaHRl 1419 (1466)
T PTZ00265 1359 LSGGQKQRIAIA---RALL-REPKI---LLLDEATSSLDSNSEK---LIEKTIVDIKDKADKTIITIAHRI 1419 (1466)
T ss_pred CCHHHHHHHHHH---HHHh-cCCCE---EEEeCcccccCHHHHH---HHHHHHHHHhccCCCEEEEEechH
Confidence 899999999999 6665 67777 8999999999999844 344445444211233345677654
No 333
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=6.1e-11 Score=136.40 Aligned_cols=196 Identities=15% Similarity=0.176 Sum_probs=119.7
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGN 107 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~ 107 (602)
+++.+++.+..| ....+|+++++.| ++++|+|||||||||||++|+|. .++++| |++.+
T Consensus 311 ~~l~~~~l~~~y----~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~------------~~p~~G~i~~~~- 373 (638)
T PRK10636 311 PLLKMEKVSAGY----GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGE------------LAPVSGEIGLAK- 373 (638)
T ss_pred ceEEEEeeEEEe----CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCCeEEECC-
Confidence 356665543322 2346899999988 89999999999999999999998 488999 88753
Q ss_pred ccCccccCcceEEEeeccc-cccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcc
Q 007480 108 PVEMEIDGSRTSVFYLDTE-GFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQD 186 (602)
Q Consensus 108 ~~~~~~~~~~~~vvl~Dte-G~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~ 186 (602)
+..++++.|+.. .+. +..++.+++ .. + .
T Consensus 374 -------~~~igy~~Q~~~~~l~--~~~~~~~~~----~~-------~--~----------------------------- 402 (638)
T PRK10636 374 -------GIKLGYFAQHQLEFLR--ADESPLQHL----AR-------L--A----------------------------- 402 (638)
T ss_pred -------CEEEEEecCcchhhCC--ccchHHHHH----HH-------h--C-----------------------------
Confidence 135788887641 111 111111110 00 0 0
Q ss_pred cccCcccchhhhhhccCCcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCC
Q 007480 187 VAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMK 264 (602)
Q Consensus 187 ~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p 264 (602)
| ....+.+...|...... ..++.+..+|+|++++..++ .++ +..|.+ .++|||
T Consensus 403 ----~--------------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La---~~l-~~~p~l---LlLDEP 457 (638)
T PRK10636 403 ----P--------------QELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLA---LIV-WQRPNL---LLLDEP 457 (638)
T ss_pred ----c--------------hhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHH---HHH-hcCCCE---EEEcCC
Confidence 0 00011222333333221 12466789999999999988 444 467777 899999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCC-CCCcchHHH
Q 007480 265 DEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEI-PSTGSLVEV 327 (602)
Q Consensus 265 ~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~v-P~~~sl~e~ 327 (602)
+++||+... +.+.+.+.+. . . .-..+++. .+..-+.+.+-.+++|.+ +..++..+.
T Consensus 458 t~~LD~~~~---~~l~~~L~~~--~-g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 458 TNHLDLDMR---QALTEALIDF--E-G-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred CCCCCHHHH---HHHHHHHHHc--C-C-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 999999994 4556666554 1 1 23455553 333334445555678876 356665554
No 334
>PLN03140 ABC transporter G family member; Provisional
Probab=99.18 E-value=7.9e-11 Score=145.63 Aligned_cols=193 Identities=19% Similarity=0.175 Sum_probs=115.8
Q ss_pred cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCC---cc-eEEcCcccCccccCcceEEE
Q 007480 49 GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKT---KG-IWVWGNPVEMEIDGSRTSVF 121 (602)
Q Consensus 49 al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~T---kG-Iwi~~~~~~~~~~~~~~~vv 121 (602)
...+|+++++.+ ++++|+||||||||||||+|+|.. +++ +| |.+.|.++.....+..++++
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l------------~~~~~~~G~I~~nG~~~~~~~~~~~i~yv 244 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKL------------DPSLKVSGEITYNGYRLNEFVPRKTSAYI 244 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC------------CCCCcceeEEEECCEechhhcccceeEEe
Confidence 456899999887 999999999999999999999983 444 89 99999876432224678999
Q ss_pred eeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhc
Q 007480 122 YLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRD 201 (602)
Q Consensus 122 l~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRD 201 (602)
.|+..-+ +.+|++|++.|+... .......+ .+. ++...- ......|..-+-.....
T Consensus 245 ~Q~d~~~---~~lTV~EtL~f~a~~-------~~~~~~~~-----~~~---~~~~~e------k~~~~~~~~~i~~~~~~ 300 (1470)
T PLN03140 245 SQNDVHV---GVMTVKETLDFSARC-------QGVGTRYD-----LLS---ELARRE------KDAGIFPEAEVDLFMKA 300 (1470)
T ss_pred cccccCC---CcCcHHHHHHHHHHh-------cCCCCccc-----chh---hcCHHH------HhccCCCchhhHHHHHH
Confidence 9986443 467999999997643 11000000 000 000000 00000010000000000
Q ss_pred cC-CcccHHHHHHHHHHhCCCC------CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHH
Q 007480 202 FL-QGKSVQEMVHDALQRVPND------KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVK 274 (602)
Q Consensus 202 f~-~g~t~~eyLe~aL~~~~~~------~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e 274 (602)
-. .|.......+..|+..+.. -+++.+..+|+|++++..++ +.++..|.+ .+.|||+++||+...
T Consensus 301 ~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia----~aL~~~p~v---lllDEPTsGLDs~t~- 372 (1470)
T PLN03140 301 TAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTG----EMIVGPTKT---LFMDEISTGLDSSTT- 372 (1470)
T ss_pred hhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeeh----hhhcCCCcE---EEEeCCCcCccHHHH-
Confidence 00 1111223345555555432 12456778999999999888 334467777 789999999999984
Q ss_pred HHHHHHHHHhhhc
Q 007480 275 RREQLKKLVASVT 287 (602)
Q Consensus 275 ~~~~L~~~I~~~~ 287 (602)
.++.+.+.+..
T Consensus 373 --~~i~~~Lr~la 383 (1470)
T PLN03140 373 --YQIVKCLQQIV 383 (1470)
T ss_pred --HHHHHHHHHHH
Confidence 45555555553
No 335
>PLN03140 ABC transporter G family member; Provisional
Probab=99.18 E-value=7.8e-11 Score=145.70 Aligned_cols=170 Identities=15% Similarity=0.162 Sum_probs=108.9
Q ss_pred cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeec
Q 007480 49 GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLD 124 (602)
Q Consensus 49 al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~D 124 (602)
..++|+++++.+ ++++|+||||||||||||+|+|.. . ..+++| |.+.|.+......+..++++.|+
T Consensus 892 ~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~-~---------~g~~~G~I~inG~~~~~~~~~~~igyv~Q~ 961 (1470)
T PLN03140 892 RLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-T---------GGYIEGDIRISGFPKKQETFARISGYCEQN 961 (1470)
T ss_pred CceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCC-C---------CCcccceEEECCccCChHHhhhheEEEccc
Confidence 346899999888 899999999999999999999973 0 013579 99999876432224568999998
Q ss_pred cccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCC
Q 007480 125 TEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQ 204 (602)
Q Consensus 125 teG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~ 204 (602)
...+ +..|++|++.|+...-+.. +.......+.++++...++|.+.. |
T Consensus 962 d~~~---~~lTV~E~L~~~a~lr~~~----~~~~~~~~~~v~~vl~~lgL~~~~----------------------~--- 1009 (1470)
T PLN03140 962 DIHS---PQVTVRESLIYSAFLRLPK----EVSKEEKMMFVDEVMELVELDNLK----------------------D--- 1009 (1470)
T ss_pred cccC---CCCcHHHHHHHHHHhCCCC----CCCHHHHHHHHHHHHHHCCChhHh----------------------C---
Confidence 6543 4679999999875321000 000011112233333333322110 0
Q ss_pred cccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHh
Q 007480 205 GKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVA 284 (602)
Q Consensus 205 g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~ 284 (602)
... +...+..+|++++++..++ +.++..|.+ .+.|||+++||+.... .+.+.+.
T Consensus 1010 -------------~~v---g~~~~~~LSgGerkRvsIa----~aL~~~P~l---L~LDEPTsgLD~~~a~---~v~~~L~ 1063 (1470)
T PLN03140 1010 -------------AIV---GLPGVTGLSTEQRKRLTIA----VELVANPSI---IFMDEPTSGLDARAAA---IVMRTVR 1063 (1470)
T ss_pred -------------Ccc---CCCCCCCcCHHHHHHHHHH----HHHhhCCCE---EEEeCCCCCCCHHHHH---HHHHHHH
Confidence 000 0112357899999999988 445578888 8999999999999844 4555554
Q ss_pred hh
Q 007480 285 SV 286 (602)
Q Consensus 285 ~~ 286 (602)
++
T Consensus 1064 ~l 1065 (1470)
T PLN03140 1064 NT 1065 (1470)
T ss_pred HH
Confidence 44
No 336
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.18 E-value=7.5e-11 Score=122.74 Aligned_cols=162 Identities=20% Similarity=0.105 Sum_probs=101.6
Q ss_pred CCCCcccEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-
Q 007480 26 NFHQAFPIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG- 101 (602)
Q Consensus 26 ~~~~~iplv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG- 101 (602)
+.+...+.+.+++.+ + . ...+|+++++.+ ++++|+|+||||||||+++|+|. .+++.|
T Consensus 32 ~~~~~~~~l~i~nls--~--~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl------------~~p~~G~ 93 (282)
T cd03291 32 KHSSDDNNLFFSNLC--L--V--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE------------LEPSEGK 93 (282)
T ss_pred ccCCCCCeEEEEEEE--E--e--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCcE
Confidence 344556667776542 2 1 245899999988 89999999999999999999998 488999
Q ss_pred eEEcCcccCccccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcc
Q 007480 102 IWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGR 181 (602)
Q Consensus 102 Iwi~~~~~~~~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~ 181 (602)
|.+.+ .++++.++...+ ..++.||+.+.... .+..+..+...+++.+.+.
T Consensus 94 I~i~g----------~i~yv~q~~~l~----~~tv~enl~~~~~~--------------~~~~~~~~l~~~~l~~~l~-- 143 (282)
T cd03291 94 IKHSG----------RISFSSQFSWIM----PGTIKENIIFGVSY--------------DEYRYKSVVKACQLEEDIT-- 143 (282)
T ss_pred EEECC----------EEEEEeCccccc----ccCHHHHhhccccc--------------CHHHHHHHHHHhCCHHHHH--
Confidence 88765 378888876433 23788887653210 0111111111122211110
Q ss_pred cCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccC
Q 007480 182 VKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLC 261 (602)
Q Consensus 182 ~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~ 261 (602)
..|. +. ....++...++|+++++...++ .+++ ..|.+ .+.
T Consensus 144 -------~~~~------------~~--------------~~~~~~~~~~LSgGq~qrv~lA---raL~-~~p~i---LiL 183 (282)
T cd03291 144 -------KFPE------------KD--------------NTVLGEGGITLSGGQRARISLA---RAVY-KDADL---YLL 183 (282)
T ss_pred -------hccc------------cc--------------cceecCCCCcCCHHHHHHHHHH---HHHh-cCCCE---EEE
Confidence 0010 00 0000223567899999988887 4444 56776 789
Q ss_pred CCCCCCCCHHHHHH
Q 007480 262 DMKDEELDPIYVKR 275 (602)
Q Consensus 262 d~p~~~Ld~~F~e~ 275 (602)
|+|++.||+...+.
T Consensus 184 DEPt~gLD~~~~~~ 197 (282)
T cd03291 184 DSPFGYLDVFTEKE 197 (282)
T ss_pred ECCCccCCHHHHHH
Confidence 99999999998543
No 337
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.18 E-value=1.7e-11 Score=118.78 Aligned_cols=48 Identities=27% Similarity=0.453 Sum_probs=42.1
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCccc
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPV 109 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~ 109 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|. .+++.| |.+.+.++
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~------------~~~~~G~v~~~g~~~ 63 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGL------------LKPSSGEILLDGKDL 63 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEECCEEC
Confidence 45899999888 89999999999999999999998 488999 88877544
No 338
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.18 E-value=4.6e-11 Score=115.49 Aligned_cols=47 Identities=32% Similarity=0.418 Sum_probs=42.1
Q ss_pred cccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCccc
Q 007480 51 ETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPV 109 (602)
Q Consensus 51 ~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~ 109 (602)
.+++++++.+ ++++|+|+||||||||++.|+|. .+++.| |++.+.++
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~------------~~~~~G~i~~~g~~~ 66 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGD------------LKPQQGEITLDGVPV 66 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhcc------------CCCCCCEEEECCEEH
Confidence 4899999988 89999999999999999999998 478999 98887654
No 339
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.18 E-value=4.3e-11 Score=135.48 Aligned_cols=147 Identities=18% Similarity=0.163 Sum_probs=99.6
Q ss_pred cccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEEEee
Q 007480 51 ETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSVFYL 123 (602)
Q Consensus 51 ~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~vvl~ 123 (602)
.+|+++++.+ ++++|+||+|||||||++.|+|. .+|++| |.+.|.++... ..+..++++.|
T Consensus 356 ~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~------------~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 423 (555)
T TIGR01194 356 FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL------------YIPQEGEILLDGAAVSADSRDDYRDLFSAIFA 423 (555)
T ss_pred ceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEECCEECCCCCHHHHHhhCcEEcc
Confidence 4899999888 99999999999999999999998 488999 99999887532 12466889998
Q ss_pred ccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccC
Q 007480 124 DTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFL 203 (602)
Q Consensus 124 DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~ 203 (602)
|+.-+.+ ++.+| .....+++++.+....+++.+.+ .-.|
T Consensus 424 ~~~lf~~----ti~~n----------------~~~~~~~~~~~~~~~~~~l~~~~---------~~lp------------ 462 (555)
T TIGR01194 424 DFHLFDD----LIGPD----------------EGEHASLDNAQQYLQRLEIADKV---------KIED------------ 462 (555)
T ss_pred Chhhhhh----hhhcc----------------cccchhHHHHHHHHHHcCCchhh---------cccc------------
Confidence 8765532 33333 11122334444444333332211 0011
Q ss_pred CcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHH
Q 007480 204 QGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRR 276 (602)
Q Consensus 204 ~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~ 276 (602)
+| .+....+|+|++++.+++ +++. ..|.+ .+.|||+++||++..+.+
T Consensus 463 ~g-------------------~~t~~~LSgGq~qRlala---Rall-~~~~i---lilDE~ts~LD~~~~~~i 509 (555)
T TIGR01194 463 GG-------------------FSTTTALSTGQQKRLALI---CAWL-EDRPI---LLFDEWAADQDPAFKRFF 509 (555)
T ss_pred cc-------------------cCCcccCCHHHHHHHHHH---HHHH-cCCCE---EEEeCCccCCCHHHHHHH
Confidence 11 111257899999999988 5655 56666 789999999999985433
No 340
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.17 E-value=7e-11 Score=120.53 Aligned_cols=186 Identities=20% Similarity=0.223 Sum_probs=123.9
Q ss_pred cEEeeCCCcceEEeccc-----cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-e
Q 007480 32 PIVEPDPGHTKLRLSRE-----GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-I 102 (602)
Q Consensus 32 plv~~d~~~~~l~~~~e-----al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-I 102 (602)
+++.+.+....|.+... ...++++||+.+ +++|+||.||||||||-+.|+|+ .+||.| |
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L------------~~pt~G~i 70 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL------------EEPTSGEI 70 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcC------------cCCCCceE
Confidence 34555555444544321 467899999999 99999999999999999999999 589999 9
Q ss_pred EEcCcccCccccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhccc
Q 007480 103 WVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRV 182 (602)
Q Consensus 103 wi~~~~~~~~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~ 182 (602)
++.|+++..-. .....+.+.++...+++.+..
T Consensus 71 ~f~g~~i~~~~--------------------------------------------~~~~~~~v~elL~~Vgl~~~~---- 102 (268)
T COG4608 71 LFEGKDITKLS--------------------------------------------KEERRERVLELLEKVGLPEEF---- 102 (268)
T ss_pred EEcCcchhhcc--------------------------------------------hhHHHHHHHHHHHHhCCCHHH----
Confidence 99887653210 111122233333333332211
Q ss_pred CCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCC
Q 007480 183 KGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCD 262 (602)
Q Consensus 183 ~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d 262 (602)
..+.+.++|++++|+..++ +++. -.|.. ..+|
T Consensus 103 -----------------------------------------~~ryPhelSGGQrQRi~IA---RALa-l~P~l---iV~D 134 (268)
T COG4608 103 -----------------------------------------LYRYPHELSGGQRQRIGIA---RALA-LNPKL---IVAD 134 (268)
T ss_pred -----------------------------------------hhcCCcccCchhhhhHHHH---HHHh-hCCcE---EEec
Confidence 1345667888988888887 5655 57877 7899
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeecc-HHHHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 263 MKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNG-NEFVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 263 ~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG-~~l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
||++.||---..|+.+|...+.+. ..+.-..+++ -..+.++.+.+..+..|.+-..+...+.+
T Consensus 135 EpvSaLDvSiqaqIlnLL~dlq~~---~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~ 198 (268)
T COG4608 135 EPVSALDVSVQAQILNLLKDLQEE---LGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVF 198 (268)
T ss_pred CchhhcchhHHHHHHHHHHHHHHH---hCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHh
Confidence 999999998866666665555432 3444455665 34555666677777778887777655554
No 341
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.16 E-value=4e-11 Score=135.43 Aligned_cols=187 Identities=16% Similarity=0.145 Sum_probs=112.1
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEEEe
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSVFY 122 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~vvl 122 (602)
..+|+++++.+ +.++|+||+|||||||++.|+|. .+|++| |.+.|.++... ..+..++++.
T Consensus 336 ~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~------------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 403 (547)
T PRK10522 336 GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGL------------YQPQSGEILLDGKPVTAEQPEDYRKLFSAVF 403 (547)
T ss_pred CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCeEEEECCEECCCCCHHHHhhheEEEe
Confidence 35899999888 89999999999999999999998 488999 99999887531 2346789999
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
||+.-+++ ++.+| ....+++.+.+....+++.+..
T Consensus 404 q~~~lf~~----ti~~n-----------------~~~~~~~~~~~~~~~~~l~~~~------------------------ 438 (547)
T PRK10522 404 TDFHLFDQ----LLGPE-----------------GKPANPALVEKWLERLKMAHKL------------------------ 438 (547)
T ss_pred cChhHHHH----hhccc-----------------cCchHHHHHHHHHHHcCCchhh------------------------
Confidence 98765532 22222 0111222222221111111000
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~ 282 (602)
+ .+.. ...-..+|+|++++..++ +++. ..|.+ .+.|||++.||++..+ .+.+.
T Consensus 439 ----------~-----~~~~--~~~G~~LSgGq~qRl~lA---Ral~-~~~~i---lilDE~ts~LD~~~~~---~i~~~ 491 (547)
T PRK10522 439 ----------E-----LEDG--RISNLKLSKGQKKRLALL---LALA-EERDI---LLLDEWAADQDPHFRR---EFYQV 491 (547)
T ss_pred ----------h-----cccc--CCCCCCCCHHHHHHHHHH---HHHh-cCCCE---EEEECCCCCCCHHHHH---HHHHH
Confidence 0 0000 000136889999999888 6665 67776 7899999999999844 44444
Q ss_pred HhhhcCCCccceEeeccHHHHHHHHHHHHHHcCCCCCC
Q 007480 283 VASVTRPKIVQGKFLNGNEFVAFMEQILEALNKGEIPS 320 (602)
Q Consensus 283 I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aINsG~vP~ 320 (602)
+.+..+.+..+-..+++..-.-...+.+-.+++|++..
T Consensus 492 l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e 529 (547)
T PRK10522 492 LLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529 (547)
T ss_pred HHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEE
Confidence 44332212223456666431111222333346676643
No 342
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.15 E-value=9.7e-11 Score=110.78 Aligned_cols=200 Identities=17% Similarity=0.198 Sum_probs=131.5
Q ss_pred cccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---------c
Q 007480 47 REGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---------I 113 (602)
Q Consensus 47 ~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---------~ 113 (602)
..+.++|.||++.- +.+.++||+|+|||+|++.|.-+ +-+..| ..+.+..+... .
T Consensus 12 yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnll------------e~p~sg~l~ia~~~fd~s~~~~~k~i~~ 79 (242)
T COG4161 12 YGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLL------------EMPRSGTLNIAGNHFDFSKTPSDKAIRD 79 (242)
T ss_pred cccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHH------------hCCCCCeEEecccccccccCccHHHHHH
Confidence 46678899998766 89999999999999999998866 577888 77776655431 1
Q ss_pred cCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCccc
Q 007480 114 DGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAK 193 (602)
Q Consensus 114 ~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~ 193 (602)
.+.++++|||... ..|++++.+|++-+-.- +..+.+. ++
T Consensus 80 lr~~vgmvfqqy~---lwphltv~enlieap~k------v~gl~~~---qa----------------------------- 118 (242)
T COG4161 80 LRRNVGMVFQQYN---LWPHLTVQENLIEAPCR------VLGLSKD---QA----------------------------- 118 (242)
T ss_pred HHHhhhhhhhhhc---cCchhHHHHHHHhhhHH------HhCCCHH---HH-----------------------------
Confidence 2567888887653 44678888887765422 1111111 11
Q ss_pred chhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHH
Q 007480 194 LVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIY 272 (602)
Q Consensus 194 flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F 272 (602)
.....+.|+.... +.+|+.+-.++++++++.+++ ++. |..|.. .|.|+|+..|||+-
T Consensus 119 ---------------~~~a~ellkrlrl~~~adr~plhlsggqqqrvaia---ral-mmkpqv---llfdeptaaldpei 176 (242)
T COG4161 119 ---------------LARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIA---RAL-MMEPQV---LLFDEPTAALDPEI 176 (242)
T ss_pred ---------------HHHHHHHHHHhccccccccCceecccchhhhHHHH---HHH-hcCCcE---EeecCcccccCHHH
Confidence 1111122222222 223555667889999999888 444 467777 89999999999998
Q ss_pred HHHHHHHHHHHhhhcCCCccceEeecc-HHHHHHHHHHHHHHcCCCCCCCcchH
Q 007480 273 VKRREQLKKLVASVTRPKIVQGKFLNG-NEFVAFMEQILEALNKGEIPSTGSLV 325 (602)
Q Consensus 273 ~e~~~~L~~~I~~~~~pK~l~g~~ltG-~~l~~lv~~yv~aINsG~vP~~~sl~ 325 (602)
..++-++|.++.. -.+.-..+|+ -..+.-+.+.|--+.+|.+...++..
T Consensus 177 ---taqvv~iikel~~-tgitqvivthev~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 177 ---TAQIVSIIKELAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred ---HHHHHHHHHHHHh-cCceEEEEEeehhHHHhhhhheEeeecCeeEeecchh
Confidence 5566777777643 2444456666 34555566666666788887776543
No 343
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.14 E-value=1.6e-10 Score=116.03 Aligned_cols=192 Identities=20% Similarity=0.237 Sum_probs=117.7
Q ss_pred ccEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcC
Q 007480 31 FPIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWG 106 (602)
Q Consensus 31 iplv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~ 106 (602)
-+++..++. .+..+...+|++|+-.| +-.+|+|||||||||||++++|. .+++.| +.+.|
T Consensus 29 ~~li~l~~v----~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~------------~~pssg~~~~~G 92 (257)
T COG1119 29 EPLIELKNV----SVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGE------------HPPSSGDVTLLG 92 (257)
T ss_pred cceEEecce----EEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcc------------cCCCCCceeeee
Confidence 356777653 44556788999999888 88999999999999999999998 588888 88888
Q ss_pred cccCccc----cCcceEEEeeccccccc-cCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcc
Q 007480 107 NPVEMEI----DGSRTSVFYLDTEGFES-IGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGR 181 (602)
Q Consensus 107 ~~~~~~~----~~~~~~vvl~DteG~~~-~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~ 181 (602)
+++-... .++.++++- .+.-.. .+..+++|.++-+... |.=+|-
T Consensus 93 ~~~G~~~~~~elrk~IG~vS--~~L~~~~~~~~~v~dvVlSg~~~---siG~y~-------------------------- 141 (257)
T COG1119 93 RRFGKGETIFELRKRIGLVS--SELHERFRVRETVRDVVLSGFFA---SIGIYQ-------------------------- 141 (257)
T ss_pred eeccCCcchHHHHHHhCccC--HHHHhhcccccccceeeeecccc---cccccc--------------------------
Confidence 7664321 123344331 111000 0112233332221110 111110
Q ss_pred cCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhccc
Q 007480 182 VKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKL 260 (602)
Q Consensus 182 ~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L 260 (602)
+|.+ ....+.....|+.++. ...++....+|.+++++.-++ ++. +.+|.+ .+
T Consensus 142 ------------------~~~~--~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLia---RAL-v~~P~L---Li 194 (257)
T COG1119 142 ------------------EDLT--AEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIA---RAL-VKDPEL---LI 194 (257)
T ss_pred ------------------cCCC--HHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHH---HHH-hcCCCE---EE
Confidence 0111 1122233344444443 344677889999999998887 454 478988 89
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccc-eEeecc
Q 007480 261 CDMKDEELDPIYVKRREQLKKLVASVTRPKIVQ-GKFLNG 299 (602)
Q Consensus 261 ~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~-g~~ltG 299 (602)
+|||.++||... ++.|.+++.+....+.-. -..||+
T Consensus 195 LDEP~~GLDl~~---re~ll~~l~~~~~~~~~~~ll~VtH 231 (257)
T COG1119 195 LDEPAQGLDLIA---REQLLNRLEELAASPGAPALLFVTH 231 (257)
T ss_pred ecCccccCChHH---HHHHHHHHHHHhcCCCCceEEEEEc
Confidence 999999999998 567777777765443322 345555
No 344
>PLN03073 ABC transporter F family; Provisional
Probab=99.14 E-value=1.4e-10 Score=134.79 Aligned_cols=189 Identities=15% Similarity=0.193 Sum_probs=113.7
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGN 107 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~ 107 (602)
+++.+++.+. .+. +...+|+++++.+ ++++|+|||||||||||++|+|. .+|+.| |++.+
T Consensus 507 ~~L~~~~ls~--~y~-~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gl------------l~p~~G~I~~~~- 570 (718)
T PLN03073 507 PIISFSDASF--GYP-GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGE------------LQPSSGTVFRSA- 570 (718)
T ss_pred ceEEEEeeEE--EeC-CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCC------------CCCCCceEEECC-
Confidence 4566655432 222 1234899999988 89999999999999999999998 488999 87643
Q ss_pred ccCccccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCccc
Q 007480 108 PVEMEIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDV 187 (602)
Q Consensus 108 ~~~~~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~ 187 (602)
+..++++.|+.. +..++.++..+.+... +. ...+
T Consensus 571 -------~~~igyv~Q~~~-----~~l~~~~~~~~~~~~~------~~---~~~~------------------------- 604 (718)
T PLN03073 571 -------KVRMAVFSQHHV-----DGLDLSSNPLLYMMRC------FP---GVPE------------------------- 604 (718)
T ss_pred -------ceeEEEEecccc-----ccCCcchhHHHHHHHh------cC---CCCH-------------------------
Confidence 245888888751 1123333322211100 00 0001
Q ss_pred ccCcccchhhhhhccCCcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCC
Q 007480 188 AFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKD 265 (602)
Q Consensus 188 ~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~ 265 (602)
+.++.+|...+.. ..++.+.++|+|++++..++ .+ ++..|.+ .++|||+
T Consensus 605 ----------------------~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLA---ra-L~~~p~l---LLLDEPT 655 (718)
T PLN03073 605 ----------------------QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFA---KI-TFKKPHI---LLLDEPS 655 (718)
T ss_pred ----------------------HHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHH---HH-HhcCCCE---EEEcCCC
Confidence 1122333333221 12456788999999999988 34 4477887 8999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCC
Q 007480 266 EELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEI 318 (602)
Q Consensus 266 ~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~v 318 (602)
+.||+...+ .+.+.+.+. +. .-..+++. .+...+.+.+-.+.+|.+
T Consensus 656 ~~LD~~s~~---~l~~~L~~~---~g-tvIivSHd~~~i~~~~drv~~l~~G~i 702 (718)
T PLN03073 656 NHLDLDAVE---ALIQGLVLF---QG-GVLMVSHDEHLISGSVDELWVVSEGKV 702 (718)
T ss_pred CCCCHHHHH---HHHHHHHHc---CC-EEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 999999854 455555433 11 22355553 333333344445567766
No 345
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.14 E-value=8.2e-11 Score=112.44 Aligned_cols=48 Identities=27% Similarity=0.396 Sum_probs=42.0
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCccc
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPV 109 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~ 109 (602)
..+++++++.+ ++++|+|+||+|||||+++|+|. .+++.| |.+.+.++
T Consensus 13 ~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~------------~~~~~G~v~~~g~~~ 64 (163)
T cd03216 13 VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL------------YKPDSGEILVDGKEV 64 (163)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCeEEEECCEEC
Confidence 35899999888 99999999999999999999998 488999 88877543
No 346
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.4e-10 Score=112.22 Aligned_cols=164 Identities=18% Similarity=0.226 Sum_probs=108.3
Q ss_pred EEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCc-c
Q 007480 43 LRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGS-R 117 (602)
Q Consensus 43 l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~-~ 117 (602)
+....+...++.++++.+ +.+-|.||||+||||||++|+|+. +|+.| |.+.+.++....... .
T Consensus 8 L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl------------~p~~G~v~~~~~~i~~~~~~~~~ 75 (209)
T COG4133 8 LSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLL------------RPDAGEVYWQGEPIQNVRESYHQ 75 (209)
T ss_pred hhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHccc------------CCCCCeEEecCCCCccchhhHHH
Confidence 444555667889999888 999999999999999999999994 89999 988888776431100 1
Q ss_pred eEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhh
Q 007480 118 TSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWL 197 (602)
Q Consensus 118 ~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~ 197 (602)
....+-.-.|+.. .+|+.||+.|--..
T Consensus 76 ~l~yLGH~~giK~--eLTa~ENL~F~~~~--------------------------------------------------- 102 (209)
T COG4133 76 ALLYLGHQPGIKT--ELTALENLHFWQRF--------------------------------------------------- 102 (209)
T ss_pred HHHHhhccccccc--hhhHHHHHHHHHHH---------------------------------------------------
Confidence 1111112233321 45666666663222
Q ss_pred hhhccCCcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHH
Q 007480 198 IQRDFLQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRR 276 (602)
Q Consensus 198 vvRDf~~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~ 276 (602)
.++ ...+-+.++|..++. ...+.....+|.+++.+.+++ +..+-++|. -+.|||+..||.+-+
T Consensus 103 -----~~~-~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlA---rL~ls~~pL----WiLDEP~taLDk~g~--- 166 (209)
T COG4133 103 -----HGS-GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALA---RLWLSPAPL----WILDEPFTALDKEGV--- 166 (209)
T ss_pred -----hCC-CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHH---HHHcCCCCc----eeecCcccccCHHHH---
Confidence 111 123334566666664 223566778999999999998 666656675 589999999999984
Q ss_pred HHHHHHHhhhc
Q 007480 277 EQLKKLVASVT 287 (602)
Q Consensus 277 ~~L~~~I~~~~ 287 (602)
..|-..+...+
T Consensus 167 a~l~~l~~~H~ 177 (209)
T COG4133 167 ALLTALMAAHA 177 (209)
T ss_pred HHHHHHHHHHh
Confidence 45555555443
No 347
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.13 E-value=1.1e-10 Score=144.74 Aligned_cols=79 Identities=20% Similarity=0.265 Sum_probs=64.6
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEc-CcccCc---cccCcceEEE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVW-GNPVEM---EIDGSRTSVF 121 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~-~~~~~~---~~~~~~~~vv 121 (602)
..+|+++++.+ ++++|+||||||||||++.|+|+ .+|++| |++. +.++.. ...+..+++|
T Consensus 398 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl------------~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V 465 (1466)
T PTZ00265 398 VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERL------------YDPTEGDIIINDSHNLKDINLKWWRSKIGVV 465 (1466)
T ss_pred CceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHh------------ccCCCCeEEEeCCcchhhCCHHHHHHhccEe
Confidence 45899999988 99999999999999999999998 489999 9994 566532 1134679999
Q ss_pred eeccccccccCCCCchhHHHHHH
Q 007480 122 YLDTEGFESIGKSNVYDDRIFAL 144 (602)
Q Consensus 122 l~DteG~~~~~~~tv~d~~ifaL 144 (602)
.||+..|. .|++||+.++.
T Consensus 466 ~Q~~~LF~----~TI~eNI~~g~ 484 (1466)
T PTZ00265 466 SQDPLLFS----NSIKNNIKYSL 484 (1466)
T ss_pred cccccchh----ccHHHHHHhcC
Confidence 99987663 48999998853
No 348
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.13 E-value=1.4e-10 Score=111.10 Aligned_cols=68 Identities=18% Similarity=0.116 Sum_probs=53.3
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeecc
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLDT 125 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~Dt 125 (602)
..+|+++++.+ ++++|+|+||||||||+++|+|. .+++.| |.+.+. ..++++.+|.
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~~~--------~~i~~~~q~~ 73 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGL------------WPWGSGRIGMPEG--------EDLLFLPQRP 73 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCceEEECCC--------ceEEEECCCC
Confidence 35899999888 89999999999999999999998 478999 877542 4688888876
Q ss_pred ccccccCCCCchhHHH
Q 007480 126 EGFESIGKSNVYDDRI 141 (602)
Q Consensus 126 eG~~~~~~~tv~d~~i 141 (602)
.-+ ..++.||+.
T Consensus 74 ~~~----~~tv~~nl~ 85 (166)
T cd03223 74 YLP----LGTLREQLI 85 (166)
T ss_pred ccc----cccHHHHhh
Confidence 421 346666644
No 349
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.13 E-value=9.3e-11 Score=115.60 Aligned_cols=66 Identities=21% Similarity=0.248 Sum_probs=49.7
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc----cCcceEEE
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI----DGSRTSVF 121 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~----~~~~~~vv 121 (602)
..+|+++++.+ ++++|+|+||+|||||++.|+|.. ..+++.| |.+.+.++.... .+..++++
T Consensus 13 ~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~----------~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 82 (200)
T cd03217 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHP----------KYEVTEGEILFKGEDITDLPPEERARLGIFLA 82 (200)
T ss_pred EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCC----------cCCCCccEEEECCEECCcCCHHHHhhCcEEEe
Confidence 35899999888 899999999999999999999972 0157899 999987764311 12236666
Q ss_pred eecc
Q 007480 122 YLDT 125 (602)
Q Consensus 122 l~Dt 125 (602)
+++.
T Consensus 83 ~q~~ 86 (200)
T cd03217 83 FQYP 86 (200)
T ss_pred ecCh
Confidence 6653
No 350
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.12 E-value=9e-11 Score=119.21 Aligned_cols=201 Identities=17% Similarity=0.225 Sum_probs=126.9
Q ss_pred ccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCccc-Cccc-cCcceEEE
Q 007480 48 EGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPV-EMEI-DGSRTSVF 121 (602)
Q Consensus 48 eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~-~~~~-~~~~~~vv 121 (602)
...++.+|||+.| ++++++|+||+||||+|++|.|+ ..|+.| |.+.|... ..+. .-+.++++
T Consensus 35 ~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGl------------l~p~~G~v~V~G~~Pf~~~~~~~~~~~~v 102 (325)
T COG4586 35 RSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGL------------LLPTSGKVRVNGKDPFRRREEYLRSIGLV 102 (325)
T ss_pred hhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCc------------cccCCCeEEecCcCcchhHHHHHHHHHHH
Confidence 3456789999888 99999999999999999999999 489999 99988643 2211 11223333
Q ss_pred eecccc-ccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhh
Q 007480 122 YLDTEG-FESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQR 200 (602)
Q Consensus 122 l~DteG-~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvR 200 (602)
+-...+ .-+. ...|..... -.||.++...-+++++.|..++++...++ |
T Consensus 103 ~gqk~ql~Wdl---p~~ds~~v~-------~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk----------------~---- 152 (325)
T COG4586 103 MGQKLQLWWDL---PALDSLEVL-------KLIYEIPDDEFAERLDFLTEILDLEGFLK----------------W---- 152 (325)
T ss_pred hhhhheeeeec---hhhhhHHHH-------HHHHhCCHHHHHHHHHHHHHHhcchhhhh----------------h----
Confidence 322222 2222 133332221 13466666666666666666666543321 1
Q ss_pred ccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHH
Q 007480 201 DFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLK 280 (602)
Q Consensus 201 Df~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~ 280 (602)
.+..+|.+++....++ +-+|.+|.. .++|||+-+||-.. .+.++
T Consensus 153 --------------------------~vr~LSlGqRmraeLa----aaLLh~p~V---LfLDEpTvgLDV~a---q~~ir 196 (325)
T COG4586 153 --------------------------PVRKLSLGQRMRAELA----AALLHPPKV---LFLDEPTVGLDVNA---QANIR 196 (325)
T ss_pred --------------------------hhhhccchHHHHHHHH----HHhcCCCcE---EEecCCccCcchhH---HHHHH
Confidence 2334455555555554 456688888 88999999999887 45666
Q ss_pred HHHhhhcCCCccceEeeccHHHHHH--HHHHHHHHcCCCCCCCcchHHH
Q 007480 281 KLVASVTRPKIVQGKFLNGNEFVAF--MEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 281 ~~I~~~~~pK~l~g~~ltG~~l~~l--v~~yv~aINsG~vP~~~sl~e~ 327 (602)
+.+.+...... .-+.+|.+.|.++ +++.+-.|++|++-.-+++.+.
T Consensus 197 ~Flke~n~~~~-aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l 244 (325)
T COG4586 197 EFLKEYNEERQ-ATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQL 244 (325)
T ss_pred HHHHHHHHhhC-ceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHH
Confidence 66665543222 2345666666654 4566677799998777776543
No 351
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.10 E-value=1.6e-10 Score=133.33 Aligned_cols=157 Identities=14% Similarity=0.112 Sum_probs=103.7
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeecc
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLDT 125 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~Dt 125 (602)
..+|+++++.+ ++++|+||||||||||++.|+|. .+++.| |.+.+ +..++++.|++
T Consensus 465 ~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl------------~~~~~G~i~~~~--------~~~i~~v~Q~~ 524 (659)
T TIGR00954 465 DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGEL------------WPVYGGRLTKPA--------KGKLFYVPQRP 524 (659)
T ss_pred CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCCeEeecC--------CCcEEEECCCC
Confidence 46899999888 89999999999999999999998 478889 76532 35689999988
Q ss_pred ccccccCCCCchhHHHHHHHhhhhhhhhccc-chhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCC
Q 007480 126 EGFESIGKSNVYDDRIFALATVMSSVLIYNL-PETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQ 204 (602)
Q Consensus 126 eG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~-~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~ 204 (602)
..+. .|++||+.++... ... .....++++.++...+++.+.+.. | .
T Consensus 525 ~l~~----~tv~eni~~~~~~-------~~~~~~~~~~~~i~~~l~~~~l~~~~~~----------~------------~ 571 (659)
T TIGR00954 525 YMTL----GTLRDQIIYPDSS-------EDMKRRGLSDKDLEQILDNVQLTHILER----------E------------G 571 (659)
T ss_pred CCCC----cCHHHHHhcCCCh-------hhhhccCCCHHHHHHHHHHcCCHHHHhh----------c------------C
Confidence 5442 3899998764311 000 011223444444444444332210 1 0
Q ss_pred cccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHh
Q 007480 205 GKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVA 284 (602)
Q Consensus 205 g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~ 284 (602)
|. +........+|+|++++..++ +++ +.+|.+ .+.|||++.||++..+ .+.+.+.
T Consensus 572 g~---------------~~~~~~~~~LSgGqkQRl~iA---Ral-~~~p~i---llLDEpts~LD~~~~~---~l~~~l~ 626 (659)
T TIGR00954 572 GW---------------SAVQDWMDVLSGGEKQRIAMA---RLF-YHKPQF---AILDECTSAVSVDVEG---YMYRLCR 626 (659)
T ss_pred Cc---------------ccccccccCCCHHHHHHHHHH---HHH-HcCCCE---EEEeCCccCCCHHHHH---HHHHHHH
Confidence 10 000112357899999999988 444 477887 8999999999999854 4444443
No 352
>PRK13409 putative ATPase RIL; Provisional
Probab=99.09 E-value=2.7e-10 Score=129.81 Aligned_cols=79 Identities=11% Similarity=0.134 Sum_probs=52.6
Q ss_pred CCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHH
Q 007480 225 DKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFV 303 (602)
Q Consensus 225 ~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~ 303 (602)
++.+.++|++++++..++ .++ +..|.+ .+.|||++.||+.. +..+.+.|.++.+ ...-..+++. ...
T Consensus 207 ~~~~~~LSgGe~qrv~ia---~al-~~~p~l---llLDEPts~LD~~~---~~~l~~~i~~l~~--g~tvIivsHd~~~l 274 (590)
T PRK13409 207 DRDISELSGGELQRVAIA---AAL-LRDADF---YFFDEPTSYLDIRQ---RLNVARLIRELAE--GKYVLVVEHDLAVL 274 (590)
T ss_pred cCChhhCCHHHHHHHHHH---HHH-hcCCCE---EEEECCCCCCCHHH---HHHHHHHHHHHHC--CCEEEEEeCCHHHH
Confidence 567889999999999988 444 467877 89999999999998 4566666666543 2223455552 233
Q ss_pred HHHHHHHHHHcC
Q 007480 304 AFMEQILEALNK 315 (602)
Q Consensus 304 ~lv~~yv~aINs 315 (602)
..+.+.+..+.+
T Consensus 275 ~~~~D~v~vl~~ 286 (590)
T PRK13409 275 DYLADNVHIAYG 286 (590)
T ss_pred HHhCCEEEEEeC
Confidence 334444444443
No 353
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.07 E-value=1.2e-10 Score=106.90 Aligned_cols=72 Identities=28% Similarity=0.373 Sum_probs=56.7
Q ss_pred cccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc---cccCcceEEEeecc
Q 007480 53 IRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM---EIDGSRTSVFYLDT 125 (602)
Q Consensus 53 L~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~---~~~~~~~~vvl~Dt 125 (602)
|+++++.+ ++++|+|+||||||||++.|+|. .++++| |++.+.++.. ...+..++++.++.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~------------~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 68 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGL------------LPPDSGSILINGKDISDIDIEELRRRIGYVPQDP 68 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTS------------SHESEEEEEETTEEGTTSHHHHHHHTEEEEESSH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccc------------cccccccccccccccccccccccccccccccccc
Confidence 56788777 89999999999999999999998 477999 9999988765 12456789998885
Q ss_pred ccccccCCCCchhH
Q 007480 126 EGFESIGKSNVYDD 139 (602)
Q Consensus 126 eG~~~~~~~tv~d~ 139 (602)
..+. ..++.|+
T Consensus 69 ~~~~---~~tv~~~ 79 (137)
T PF00005_consen 69 QLFP---GLTVREN 79 (137)
T ss_dssp CHHT---TSBHHHH
T ss_pred cccc---ccccccc
Confidence 4443 3456666
No 354
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.05 E-value=7.9e-10 Score=113.46 Aligned_cols=53 Identities=17% Similarity=0.192 Sum_probs=39.2
Q ss_pred CCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 007480 225 DKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVT 287 (602)
Q Consensus 225 ~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~ 287 (602)
++.+.+++++++++..++ .++. ..|.+ .+.|||++.||+... ..+.+.+.+..
T Consensus 134 ~~~~~~LS~G~~qrv~la---ral~-~~p~i---lllDEPts~LD~~~~---~~l~~~l~~l~ 186 (255)
T cd03236 134 DRNIDQLSGGELQRVAIA---AALA-RDADF---YFFDEPSSYLDIKQR---LNAARLIRELA 186 (255)
T ss_pred cCChhhCCHHHHHHHHHH---HHHH-hCCCE---EEEECCCCCCCHHHH---HHHHHHHHHHH
Confidence 456678899999988887 4554 56766 789999999999984 45555555543
No 355
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.03 E-value=2.4e-10 Score=123.24 Aligned_cols=194 Identities=16% Similarity=0.199 Sum_probs=123.0
Q ss_pred CcccccCCCCcccEEeeCCC----cceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCccc
Q 007480 20 GLLAIENFHQAFPIVEPDPG----HTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVG 92 (602)
Q Consensus 20 ~~~~~~~~~~~iplv~~d~~----~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg 92 (602)
.++.....+.+-|+-...+. +-.|.+++ ...+|+||++.+ .+|+++||+|+||||+|+.|.+.
T Consensus 518 ee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p-~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRf--------- 587 (790)
T KOG0056|consen 518 EEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDP-GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRF--------- 587 (790)
T ss_pred cCchhhcCCCCCCccccCCeEEEEEeEEecCC-CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHH---------
Confidence 44555556666666444321 23455554 577999999877 99999999999999999999998
Q ss_pred ccccCCCcc-eEEcCcccCc---cccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHH
Q 007480 93 HMRDTKTKG-IWVWGNPVEM---EIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRL 168 (602)
Q Consensus 93 ~t~~~~TkG-Iwi~~~~~~~---~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L 168 (602)
-..++| |.++|+++.. ..-+..+++|.|||..|++ |+.+|+.++- .....+++...
T Consensus 588 ---fdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd----TI~yNIryak-------------~~AsneevyaA 647 (790)
T KOG0056|consen 588 ---FDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND----TILYNIRYAK-------------PSASNEEVYAA 647 (790)
T ss_pred ---hhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc----eeeeheeecC-------------CCCChHHHHHH
Confidence 367889 9999998864 2356789999999988864 5555555431 11222333333
Q ss_pred HHHHhhhhhhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEE
Q 007480 169 SFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAF 248 (602)
Q Consensus 169 ~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf 248 (602)
....++-+.|. -+|+ |- - ..++. + --.++++++|+.+++ +.
T Consensus 648 AkAA~IHdrIl---------~fPe------------gY-----~----t~VGE----R-GLkLSGGEKQRVAiA---Rt- 688 (790)
T KOG0056|consen 648 AKAAQIHDRIL---------QFPE------------GY-----N----TRVGE----R-GLKLSGGEKQRVAIA---RT- 688 (790)
T ss_pred HHHhhHHHHHh---------cCch------------hh-----h----hhhhh----c-ccccCCcchhhHHHH---HH-
Confidence 33333333321 1342 10 0 01111 1 124678888888887 33
Q ss_pred EccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 007480 249 SLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTR 288 (602)
Q Consensus 249 ~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~ 288 (602)
.|..|.+ .+.||.++.||...-+ ++...+.+.+.
T Consensus 689 iLK~P~i---IlLDEATSALDT~tER---~IQaaL~rlca 722 (790)
T KOG0056|consen 689 ILKAPSI---ILLDEATSALDTNTER---AIQAALARLCA 722 (790)
T ss_pred HhcCCcE---EEEcchhhhcCCccHH---HHHHHHHHHhc
Confidence 3578888 8999999999987643 33344444443
No 356
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.02 E-value=4.8e-10 Score=140.01 Aligned_cols=200 Identities=19% Similarity=0.202 Sum_probs=124.4
Q ss_pred EEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcce
Q 007480 43 LRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRT 118 (602)
Q Consensus 43 l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~ 118 (602)
+..+.+...+|+++++.+ +.++|+||+|||||||++.|+|. .++++| |.+.+ .+
T Consensus 644 ~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~------------~~~~~G~i~~~g----------~i 701 (1522)
T TIGR00957 644 FTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE------------MDKVEGHVHMKG----------SV 701 (1522)
T ss_pred EEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CccCCcEEEECC----------EE
Confidence 444333346899999888 89999999999999999999998 488999 88764 48
Q ss_pred EEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhh
Q 007480 119 SVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLI 198 (602)
Q Consensus 119 ~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~v 198 (602)
+++.|++.-+ ..|++||+.|+.. .+++..++.....++.+.+. ..|.
T Consensus 702 ~yv~Q~~~l~----~~Ti~eNI~~g~~--------------~~~~~~~~~~~~~~l~~~l~---------~~~~------ 748 (1522)
T TIGR00957 702 AYVPQQAWIQ----NDSLRENILFGKA--------------LNEKYYQQVLEACALLPDLE---------ILPS------ 748 (1522)
T ss_pred EEEcCCcccc----CCcHHHHhhcCCc--------------cCHHHHHHHHHHhCCHHHHH---------hcCC------
Confidence 8999987543 4699999987521 12333333333333322221 1111
Q ss_pred hhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHH
Q 007480 199 QRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQ 278 (602)
Q Consensus 199 vRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~ 278 (602)
|. + ..-++...++|+|++++..++ +++. .+|.+ .+.|+|++.||+...+ .
T Consensus 749 ------g~----------~----t~ig~~g~~LSGGQkqRiaLA---RAl~-~~~~i---llLDEp~saLD~~~~~---~ 798 (1522)
T TIGR00957 749 ------GD----------R----TEIGEKGVNLSGGQKQRVSLA---RAVY-SNADI---YLFDDPLSAVDAHVGK---H 798 (1522)
T ss_pred ------CC----------C----ceecCCCCCCCHHHHHHHHHH---HHHh-cCCCE---EEEcCCccccCHHHHH---H
Confidence 10 0 000123457899999999998 5554 56666 7899999999999844 4
Q ss_pred HHHHHhhhcC-CCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 279 LKKLVASVTR-PKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 279 L~~~I~~~~~-pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
+.+.+..... -+...-..+|+.. +... .+++-.+++|.+-..++..+..
T Consensus 799 i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 799 IFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKISEMGSYQELL 849 (1522)
T ss_pred HHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEEeeCCHHHHH
Confidence 4444432100 1122334566532 2222 3444455788877666655443
No 357
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.01 E-value=6.4e-10 Score=107.21 Aligned_cols=203 Identities=17% Similarity=0.251 Sum_probs=126.6
Q ss_pred cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc---cCcceEEE
Q 007480 49 GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI---DGSRTSVF 121 (602)
Q Consensus 49 al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~---~~~~~~vv 121 (602)
..++.+.+++.+ ..++|+|.||||||||.++|+|. .+||.| |.+++.++.... ..+.+-++
T Consensus 25 ~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGm------------i~PTsG~il~n~~~L~~~Dy~~R~k~IRMi 92 (267)
T COG4167 25 TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM------------IEPTSGEILINDHPLHFGDYSFRSKRIRMI 92 (267)
T ss_pred hhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcc------------cCCCCceEEECCccccccchHhhhhheeee
Confidence 345677788877 89999999999999999999998 599999 999999886432 34668899
Q ss_pred eeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhc
Q 007480 122 YLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRD 201 (602)
Q Consensus 122 l~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRD 201 (602)
|||+.-.. .|+..+...+-+.|.. ..|
T Consensus 93 FQDpnts~-NPRl~iGqiLd~PL~l----------------------------------------------------~T~ 119 (267)
T COG4167 93 FQDPNTSL-NPRLRIGQILDFPLRL----------------------------------------------------NTD 119 (267)
T ss_pred ecCCcccc-ChhhhhhhHhcchhhh----------------------------------------------------ccc
Confidence 99985321 1222222222222211 012
Q ss_pred cCCcccHHHHHHHHHHhCCC-C-CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHH
Q 007480 202 FLQGKSVQEMVHDALQRVPN-D-KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQL 279 (602)
Q Consensus 202 f~~g~t~~eyLe~aL~~~~~-~-~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L 279 (602)
+. ...-.+.+-+.|+.++. + .+.-++..++-+++++.+++ ++.. -+|.+ .+.|+....||..... ++
T Consensus 120 ~~-~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLA---RALI-L~P~i---IIaDeAl~~LD~smrs---Ql 188 (267)
T COG4167 120 LE-PEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALA---RALI-LRPKI---IIADEALASLDMSMRS---QL 188 (267)
T ss_pred CC-hHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHH---HHHh-cCCcE---EEehhhhhhccHHHHH---HH
Confidence 21 11124456667777765 2 22456777888899998888 5555 46777 7889999999998854 44
Q ss_pred HHHHhhhcCCCccceEeeccHHH--HHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 280 KKLVASVTRPKIVQGKFLNGNEF--VAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 280 ~~~I~~~~~pK~l~g~~ltG~~l--~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
.++..++-..-.+.=+.++ .++ ..-+.+-+-.+..|++..-++..+.+
T Consensus 189 ~NL~LeLQek~GiSyiYV~-QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 189 INLMLELQEKQGISYIYVT-QHIGMIKHISDQVLVMHEGEVVERGSTADVL 238 (267)
T ss_pred HHHHHHHHHHhCceEEEEe-chhhHhhhhcccEEEEecCceeecCChhhhh
Confidence 4444444322233222332 222 22233334444778887777766655
No 358
>PLN03232 ABC transporter C family member; Provisional
Probab=99.01 E-value=7.3e-10 Score=138.21 Aligned_cols=200 Identities=13% Similarity=0.139 Sum_probs=127.3
Q ss_pred eEEeccc-cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCc
Q 007480 42 KLRLSRE-GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGS 116 (602)
Q Consensus 42 ~l~~~~e-al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~ 116 (602)
.|..+.. ...+|+++|+.+ +.++|+||+|||||||++.|+|. .++++| +... +.
T Consensus 621 sF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~------------~~~~~G~i~~~---------~~ 679 (1495)
T PLN03232 621 YFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGE------------LSHAETSSVVI---------RG 679 (1495)
T ss_pred EEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC------------CcccCCCEEEe---------cC
Confidence 3555432 346899999988 89999999999999999999998 477887 5421 35
Q ss_pred ceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchh
Q 007480 117 RTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVW 196 (602)
Q Consensus 117 ~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw 196 (602)
.++++.|++--++ +|++||+.|+- ..+++.+.+....+++.+.+. -.|.
T Consensus 680 ~Iayv~Q~p~Lf~----gTIreNI~fg~--------------~~~~e~~~~vl~~~~L~~di~---------~Lp~---- 728 (1495)
T PLN03232 680 SVAYVPQVSWIFN----ATVRENILFGS--------------DFESERYWRAIDVTALQHDLD---------LLPG---- 728 (1495)
T ss_pred cEEEEcCcccccc----ccHHHHhhcCC--------------ccCHHHHHHHHHHhCCHHHHH---------hCCC----
Confidence 7899999987774 59999999852 234566666666666554331 1221
Q ss_pred hhhhccCCcc-cHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHH
Q 007480 197 LIQRDFLQGK-SVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKR 275 (602)
Q Consensus 197 ~vvRDf~~g~-t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~ 275 (602)
|. | .++ +.-..+|+|++++.+++ +++. .+|.+ .++|+|++.||+.-.+.
T Consensus 729 --------Gd~T----------~IG-----e~G~~LSGGQkQRIaLA---RAly-~~~~I---lLLDEptSaLD~~t~~~ 778 (1495)
T PLN03232 729 --------RDLT----------EIG-----ERGVNISGGQKQRVSMA---RAVY-SNSDI---YIFDDPLSALDAHVAHQ 778 (1495)
T ss_pred --------CCCc----------eec-----CCCcccCHHHHHHHHHH---HHHh-cCCCE---EEEcCCccccCHHHHHH
Confidence 11 0 011 11236899999999998 5554 56666 78999999999987432
Q ss_pred HHHHHHHHhhhcCCCccceEeeccHHHHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 276 REQLKKLVASVTRPKIVQGKFLNGNEFVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 276 ~~~L~~~I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
+ +.+.+....+.| +...+|+..-.--..+.+-.+++|.+-..++..+.
T Consensus 779 I--~~~~l~~~l~~k--T~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL 826 (1495)
T PLN03232 779 V--FDSCMKDELKGK--TRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAEL 826 (1495)
T ss_pred H--HHHHhhhhhcCC--EEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHH
Confidence 2 122233222222 34566664311111223334477887766665444
No 359
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.00 E-value=1.6e-09 Score=128.95 Aligned_cols=195 Identities=15% Similarity=0.163 Sum_probs=133.7
Q ss_pred ccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc----cCcceEEEee
Q 007480 52 TIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI----DGSRTSVFYL 123 (602)
Q Consensus 52 iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~----~~~~~~vvl~ 123 (602)
+.++++..| ++.|+.|+||+||||++|+|.|. .++|.| +++.|..+.... ..+.+++..|
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~------------~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ 647 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGE------------TKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQ 647 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCC------------ccCCcceEEEecCccccccchhhhhhhcccCCc
Confidence 778888777 99999999999999999999998 599999 999887775421 2455788877
Q ss_pred ccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccC
Q 007480 124 DTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFL 203 (602)
Q Consensus 124 DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~ 203 (602)
+.... +..|.+|++.+.... .++...-
T Consensus 648 ~d~l~---~~lT~rEhL~~~arl-------rG~~~~d------------------------------------------- 674 (885)
T KOG0059|consen 648 FDALW---EELTGREHLEFYARL-------RGLPRSD------------------------------------------- 674 (885)
T ss_pred hhhhh---hhccHHHHHHHHHHH-------cCCChhH-------------------------------------------
Confidence 65433 356888887775544 3322211
Q ss_pred CcccHHHHHHHHHHhCCC-CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 007480 204 QGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 204 ~g~t~~eyLe~aL~~~~~-~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~ 282 (602)
..+-++..|+.++. +..++.+..+++|.+....++ ...+-.|.. .+.|||+.++||.- +..+.+.
T Consensus 675 ----i~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~a----ialig~p~v---i~LDEPstGmDP~a---rr~lW~i 740 (885)
T KOG0059|consen 675 ----IGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFA----IALIGDPSV---ILLDEPSTGLDPKA---RRHLWDI 740 (885)
T ss_pred ----HHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHH----HHHhcCCCE---EEecCCCCCCCHHH---HHHHHHH
Confidence 12223333333332 222444566677766665555 344567777 78999999999987 5567777
Q ss_pred HhhhcCCCccceEeeccH--HHHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 283 VASVTRPKIVQGKFLNGN--EFVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 283 I~~~~~pK~l~g~~ltG~--~l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
|.+..+... +..+|.+ .-++.+++.+..+.+|.+-|++|..+.
T Consensus 741 i~~~~k~g~--aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~L 785 (885)
T KOG0059|consen 741 IARLRKNGK--AIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQEL 785 (885)
T ss_pred HHHHHhcCC--EEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHH
Confidence 776654322 4555553 345678999999999999999986543
No 360
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.00 E-value=1.8e-09 Score=121.01 Aligned_cols=161 Identities=19% Similarity=0.237 Sum_probs=103.0
Q ss_pred ccEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcceEEcCc
Q 007480 31 FPIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGN 107 (602)
Q Consensus 31 iplv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkGIwi~~~ 107 (602)
-+++..++.+.. ++. ...+++++++.| +.|+|+||||+||||||+.|+|. ..++.|...++.
T Consensus 319 ~~vl~~~~~~~~--y~~-~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~------------~~~~~G~v~~g~ 383 (530)
T COG0488 319 KLVLEFENVSKG--YDG-GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGE------------LGPLSGTVKVGE 383 (530)
T ss_pred CeeEEEeccccc--cCC-CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhh------------cccCCceEEeCC
Confidence 456666654322 222 256889999888 89999999999999999999997 366789444443
Q ss_pred ccCccccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCccc
Q 007480 108 PVEMEIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDV 187 (602)
Q Consensus 108 ~~~~~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~ 187 (602)
. -+++|+-|+..... +..++.|.+.
T Consensus 384 ~-------v~igyf~Q~~~~l~--~~~t~~d~l~---------------------------------------------- 408 (530)
T COG0488 384 T-------VKIGYFDQHRDELD--PDKTVLEELS---------------------------------------------- 408 (530)
T ss_pred c-------eEEEEEEehhhhcC--ccCcHHHHHH----------------------------------------------
Confidence 2 35788888775442 1222222111
Q ss_pred ccCcccchhhhhhccCCcccHHHHHHHHHHhCC--CCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCC
Q 007480 188 AFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVP--NDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKD 265 (602)
Q Consensus 188 ~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~--~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~ 265 (602)
+...+. ..+.+...|.... +....+.+..+|+|++.+..++ +..+.+|.. .++|||+
T Consensus 409 -------------~~~~~~-~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La----~ll~~~pNv---LiLDEPT 467 (530)
T COG0488 409 -------------EGFPDG-DEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLA----KLLLQPPNL---LLLDEPT 467 (530)
T ss_pred -------------hhCccc-cHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHH----HHhccCCCE---EEEcCCC
Confidence 100000 0222222333222 2223567889999999999888 556688888 8999999
Q ss_pred CCCCHHHHHHHHHHHHHHhh
Q 007480 266 EELDPIYVKRREQLKKLVAS 285 (602)
Q Consensus 266 ~~Ld~~F~e~~~~L~~~I~~ 285 (602)
++||.+.+ +.|.+.+.+
T Consensus 468 NhLDi~s~---~aLe~aL~~ 484 (530)
T COG0488 468 NHLDIESL---EALEEALLD 484 (530)
T ss_pred ccCCHHHH---HHHHHHHHh
Confidence 99999994 455555543
No 361
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.98 E-value=3.5e-09 Score=112.59 Aligned_cols=227 Identities=16% Similarity=0.177 Sum_probs=147.1
Q ss_pred cccEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEc
Q 007480 30 AFPIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVW 105 (602)
Q Consensus 30 ~iplv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~ 105 (602)
.-|++.+++.+-.|....+..+++++|++.+ +++++||.+|||||-..+.++|+++..+ ...-+| |.+.
T Consensus 3 ~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~-------~~~~sg~i~f~ 75 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPA-------AAHPSGSILFD 75 (534)
T ss_pred CCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCc-------ccCccceeEEc
Confidence 3467888887777888888899999999999 9999999999999999999999863211 123467 9999
Q ss_pred CcccCcc-------ccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhc-ccchhhhHHHHHHHHHHHhhhhh
Q 007480 106 GNPVEME-------IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIY-NLPETIREADISRLSFAVELAEE 177 (602)
Q Consensus 106 ~~~~~~~-------~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~Iy-N~~~~i~e~~l~~L~~~~~L~~~ 177 (602)
|.++-.. ..+.+++++||++--. ..|-.++...+.-++.. + ++.+...+
T Consensus 76 G~dll~~se~~lr~iRG~~I~MIFQEPMtS-LNPl~tIg~Qi~E~l~~-------Hrg~~~~~Ar--------------- 132 (534)
T COG4172 76 GEDLLAASERQLRGVRGNKIGMIFQEPMTS-LNPLHTIGKQLAEVLRL-------HRGLSRAAAR--------------- 132 (534)
T ss_pred ChhhhcCCHHHHhhhcccceEEEecccccc-cCcHhHHHHHHHHHHHH-------HhcccHHHHH---------------
Confidence 9876431 2477899999987321 11122333333333322 1 11222222
Q ss_pred hhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCC----CCCCchhhhhHHHHHHhhcCCCcEEEccCc
Q 007480 178 FYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDK----GDKNIDMVNQIRNSLAIMGDNSTAFSLPQP 253 (602)
Q Consensus 178 i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~----~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P 253 (602)
+..-+.|+.++.+. -++.+.++|+++++..-++ ..+...|
T Consensus 133 --------------------------------~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIA----MALan~P 176 (534)
T COG4172 133 --------------------------------ARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIA----MALANEP 176 (534)
T ss_pred --------------------------------HHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHH----HHHcCCC
Confidence 22333333333211 1456678899999988776 3344789
Q ss_pred cchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 254 HLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 254 ~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
.+ .+.|||+..||-.-.. ++.+++.++.+...+.-..+|+. .....+.++|..+.+|++-..++..+.+
T Consensus 177 ~l---LIADEPTTALDVtvQa---QIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF 246 (534)
T COG4172 177 DL---LIADEPTTALDVTVQA---QILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLF 246 (534)
T ss_pred Ce---EeecCCcchhhhhhHH---HHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHh
Confidence 88 8899999999988754 44455555544445555567763 3455667777788889887666544433
No 362
>PLN03130 ABC transporter C family member; Provisional
Probab=98.97 E-value=1.1e-09 Score=137.04 Aligned_cols=205 Identities=14% Similarity=0.168 Sum_probs=131.1
Q ss_pred EeeCCCcceEEeccc-cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCc-c-eEEcCc
Q 007480 34 VEPDPGHTKLRLSRE-GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTK-G-IWVWGN 107 (602)
Q Consensus 34 v~~d~~~~~l~~~~e-al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~Tk-G-Iwi~~~ 107 (602)
|..++. .|..+.+ ...+|+++++.+ +.++|+||+|||||||++.|+|. .++++ | |.+
T Consensus 615 I~~~nv--sf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~------------~~~~~GG~I~l--- 677 (1622)
T PLN03130 615 ISIKNG--YFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGE------------LPPRSDASVVI--- 677 (1622)
T ss_pred eEEEee--EEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHh------------hccCCCceEEE---
Confidence 444433 3555432 345899999988 89999999999999999999998 47888 8 753
Q ss_pred ccCccccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCccc
Q 007480 108 PVEMEIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDV 187 (602)
Q Consensus 108 ~~~~~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~ 187 (602)
+..++++.|++--++ +|++||+.|+. ..+++.+++....++|.+.+.
T Consensus 678 -------~~~Iayv~Q~p~Lfn----gTIreNI~fg~--------------~~d~e~y~~vl~a~~L~~di~-------- 724 (1622)
T PLN03130 678 -------RGTVAYVPQVSWIFN----ATVRDNILFGS--------------PFDPERYERAIDVTALQHDLD-------- 724 (1622)
T ss_pred -------cCeEEEEcCccccCC----CCHHHHHhCCC--------------cccHHHHHHHHHHhCcHHHHH--------
Confidence 256899999987774 59999999852 234666777766666655432
Q ss_pred ccCcccchhhhhhccCCcc-cHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCC
Q 007480 188 AFEPAKLVWLIQRDFLQGK-SVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDE 266 (602)
Q Consensus 188 ~f~P~~flw~vvRDf~~g~-t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~ 266 (602)
-.|. |. | .++ +.-..+|+|++++.+++ +++. .+|.+ .++|+|++
T Consensus 725 -~LP~------------Gd~T----------~IG-----e~G~~LSGGQKQRIaLA---RAly-~~~~I---lLLDEptS 769 (1622)
T PLN03130 725 -LLPG------------GDLT----------EIG-----ERGVNISGGQKQRVSMA---RAVY-SNSDV---YIFDDPLS 769 (1622)
T ss_pred -hCCC------------cccc----------ccc-----CCCCCCCHHHHHHHHHH---HHHh-CCCCE---EEECCCcc
Confidence 1231 21 1 011 11246899999999998 5554 55666 78999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHHHHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 267 ELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNEFVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 267 ~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
.||+.-.+.+ +.+.+....+.| ....+|+..-.---.+++-.+++|.+-..++..+.
T Consensus 770 ALD~~~~~~I--~~~~l~~~l~~k--TvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL 826 (1622)
T PLN03130 770 ALDAHVGRQV--FDKCIKDELRGK--TRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEEL 826 (1622)
T ss_pred ccCHHHHHHH--HHHHhhHHhcCC--EEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 9999874322 222333222222 34566664311111223334477887766665544
No 363
>PTZ00243 ABC transporter; Provisional
Probab=98.96 E-value=1.8e-09 Score=134.94 Aligned_cols=192 Identities=16% Similarity=0.135 Sum_probs=118.8
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeecc
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLDT 125 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~Dt 125 (602)
..+|+++++.+ ++++|+|||||||||||+.|+|. .++++| |++. ..++++.|++
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~------------~~~~~G~i~~~----------~~i~yv~Q~~ 730 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQ------------FEISEGRVWAE----------RSIAYVPQQA 730 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcC------------CCCCCcEEEEC----------CeEEEEeCCC
Confidence 45899999888 89999999999999999999998 478999 8742 4689999987
Q ss_pred ccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCc
Q 007480 126 EGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQG 205 (602)
Q Consensus 126 eG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g 205 (602)
..+ ..|++||+.|.. ..+++.+++.....++.+.+. ..| +|
T Consensus 731 ~l~----~~Tv~enI~~~~--------------~~~~~~~~~~~~~~~l~~~l~---------~l~------------~g 771 (1560)
T PTZ00243 731 WIM----NATVRGNILFFD--------------EEDAARLADAVRVSQLEADLA---------QLG------------GG 771 (1560)
T ss_pred ccC----CCcHHHHHHcCC--------------hhhHHHHHHHHHHhhhHHHHH---------Hhh------------cc
Confidence 644 458999998731 112222333222222222110 011 11
Q ss_pred ccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhh
Q 007480 206 KSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVAS 285 (602)
Q Consensus 206 ~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~ 285 (602)
. +..+ ++...++|+|++++..++ +++. .+|.+ .++|+|++.||+...+.+-+ ..+..
T Consensus 772 ~------~t~i--------~~~g~~LSGGQkqRvaLA---RAl~-~~p~i---llLDEP~saLD~~~~~~i~~--~~~~~ 828 (1560)
T PTZ00243 772 L------ETEI--------GEKGVNLSGGQKARVSLA---RAVY-ANRDV---YLLDDPLSALDAHVGERVVE--ECFLG 828 (1560)
T ss_pred c------hHHh--------cCCCCCCCHHHHHHHHHH---HHHh-cCCCE---EEEcCccccCCHHHHHHHHH--HHHHH
Confidence 1 0001 234567999999999988 4544 56776 78999999999987443221 12222
Q ss_pred hcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHHH
Q 007480 286 VTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 286 ~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
..+ ......+|+.. +.. ..+++-.+++|.+-..++..+..
T Consensus 829 ~~~--~~TvIlvTH~~~~~~-~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 829 ALA--GKTRVLATHQVHVVP-RADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred hhC--CCEEEEEeCCHHHHH-hCCEEEEEECCEEEEecCHHHHH
Confidence 222 22334566632 222 23444455788876666655544
No 364
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.96 E-value=1.1e-09 Score=129.96 Aligned_cols=202 Identities=15% Similarity=0.220 Sum_probs=136.6
Q ss_pred cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc---cccCcceEEE
Q 007480 49 GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM---EIDGSRTSVF 121 (602)
Q Consensus 49 al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~---~~~~~~~~vv 121 (602)
...+|+++++.+ +.||+|||+||||||.+..|-+. ..|+.| |.++|.++.. ...++++++|
T Consensus 1002 ~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRf------------Ydp~~G~V~IDg~dik~lnl~~LR~~i~lV 1069 (1228)
T KOG0055|consen 1002 DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERF------------YDPDAGKVKIDGVDIKDLNLKWLRKQIGLV 1069 (1228)
T ss_pred CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHh------------cCCCCCeEEECCcccccCCHHHHHHhccee
Confidence 467899999988 89999999999999999999998 489999 9999998864 2357899999
Q ss_pred eeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhc
Q 007480 122 YLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRD 201 (602)
Q Consensus 122 l~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRD 201 (602)
-|.+..|+ .|++||+.++ ..+ ++++++.+.....+.-+-+ .-.|
T Consensus 1070 sQEP~LF~----~TIrENI~YG------------~~~-vs~~eIi~Aak~ANaH~FI---------~sLP---------- 1113 (1228)
T KOG0055|consen 1070 SQEPVLFN----GTIRENIAYG------------SEE-VSEEEIIEAAKLANAHNFI---------SSLP---------- 1113 (1228)
T ss_pred ccCchhhc----ccHHHHHhcc------------CCC-CCHHHHHHHHHHhhhHHHH---------hcCc----------
Confidence 99998885 4999999875 122 5666666666655543322 2223
Q ss_pred cCCcc-cHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHH
Q 007480 202 FLQGK-SVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLK 280 (602)
Q Consensus 202 f~~g~-t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~ 280 (602)
+|- | .++ +.-.++++|++|+.+++ ++. +..|.+ +|+||-++.||.+--+.+.+-
T Consensus 1114 --~GyDT----------~vG-----erG~QLSGGQKQRIAIA---RAi-lRnPkI---LLLDEATSALDseSErvVQeA- 1168 (1228)
T KOG0055|consen 1114 --QGYDT----------RVG-----ERGVQLSGGQKQRIAIA---RAI-LRNPKI---LLLDEATSALDSESERVVQEA- 1168 (1228)
T ss_pred --CcccC----------ccC-----cccCcCCchHHHHHHHH---HHH-HcCCCe---eeeeccchhhhhhhHHHHHHH-
Confidence 121 1 011 22347899999999999 554 488998 899999999999985444333
Q ss_pred HHHhhhcCCCccceEeeccHHHHHHH-HHHHHHHcCCCCCCCcchHHHH
Q 007480 281 KLVASVTRPKIVQGKFLNGNEFVAFM-EQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 281 ~~I~~~~~pK~l~g~~ltG~~l~~lv-~~yv~aINsG~vP~~~sl~e~~ 328 (602)
+.+... .-+-..+.+ ++.+.- .+.+..+++|.|-..++=.+..
T Consensus 1169 --Ld~a~~--gRT~IvIAH-RLSTIqnaD~I~Vi~~G~VvE~GtH~~L~ 1212 (1228)
T KOG0055|consen 1169 --LDRAME--GRTTIVIAH-RLSTIQNADVIAVLKNGKVVEQGTHDELL 1212 (1228)
T ss_pred --HHHhhc--CCcEEEEec-chhhhhcCCEEEEEECCEEEecccHHHHH
Confidence 222211 111233443 333321 1223344778887777654444
No 365
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.95 E-value=1.3e-09 Score=136.02 Aligned_cols=190 Identities=19% Similarity=0.163 Sum_probs=119.8
Q ss_pred cccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeeccc
Q 007480 51 ETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLDTE 126 (602)
Q Consensus 51 ~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~Dte 126 (602)
.+|+++++.+ ++++|+||+||||||||+.|+|. .++++| |.+.| .++++.|++.
T Consensus 440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~------------~~~~~G~i~~~g----------~iayv~Q~~~ 497 (1490)
T TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE------------LEPSEGKIKHSG----------RISFSPQTSW 497 (1490)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECC----------EEEEEeCCCc
Confidence 4799999888 89999999999999999999998 488999 88764 4899999876
Q ss_pred cccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCcc
Q 007480 127 GFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGK 206 (602)
Q Consensus 127 G~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~ 206 (602)
.++ .|++||+.|+.. | ++....+.....+|.+.+. ..|. |.
T Consensus 498 l~~----~Ti~eNI~~g~~--------~------~~~~~~~~~~~~~L~~~l~---------~l~~------------g~ 538 (1490)
T TIGR01271 498 IMP----GTIKDNIIFGLS--------Y------DEYRYTSVIKACQLEEDIA---------LFPE------------KD 538 (1490)
T ss_pred cCC----ccHHHHHHhccc--------c------chHHHHHHHHHHhHHHHHH---------hccc------------cc
Confidence 553 499999998631 1 1112222222223322211 0110 10
Q ss_pred cHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 007480 207 SVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASV 286 (602)
Q Consensus 207 t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~ 286 (602)
...+ .+....+++|++++..++ +++. .+|.+ .+.|+|++.||+...+.+-+. .+...
T Consensus 539 ---------~t~v-----g~~g~~LSgGqkqRi~lA---RAl~-~~~~i---llLDep~saLD~~~~~~i~~~--~l~~~ 595 (1490)
T TIGR01271 539 ---------KTVL-----GEGGITLSGGQRARISLA---RAVY-KDADL---YLLDSPFTHLDVVTEKEIFES--CLCKL 595 (1490)
T ss_pred ---------cccc-----cCcCCCcCHHHHHHHHHH---HHHH-cCCCE---EEEeCCcccCCHHHHHHHHHH--HHHHH
Confidence 0000 123467999999999988 4544 56766 789999999999985544331 22333
Q ss_pred cCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCcchHHH
Q 007480 287 TRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTGSLVEV 327 (602)
Q Consensus 287 ~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~sl~e~ 327 (602)
.+ ..+...+|+.. .... .+++-.+++|.+-..++..+.
T Consensus 596 ~~--~~tvilvtH~~~~~~~-ad~ii~l~~g~i~~~g~~~~l 634 (1490)
T TIGR01271 596 MS--NKTRILVTSKLEHLKK-ADKILLLHEGVCYFYGTFSEL 634 (1490)
T ss_pred hc--CCeEEEEeCChHHHHh-CCEEEEEECCEEEEEcCHHHH
Confidence 22 22345566543 2222 345555677877666655444
No 366
>PLN03073 ABC transporter F family; Provisional
Probab=98.93 E-value=2.2e-09 Score=124.84 Aligned_cols=98 Identities=15% Similarity=0.083 Sum_probs=65.1
Q ss_pred cHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHh
Q 007480 207 SVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVA 284 (602)
Q Consensus 207 t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~ 284 (602)
...+.+..+|..++.. ..++.+.++|++++++..++ +.++..|.+ .+.|||++.||+..+ ..|.+++.
T Consensus 319 ~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA----~aL~~~p~l---LlLDEPt~~LD~~~~---~~l~~~L~ 388 (718)
T PLN03073 319 TAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALA----RALFIEPDL---LLLDEPTNHLDLHAV---LWLETYLL 388 (718)
T ss_pred hHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHH----HHHhcCCCE---EEEECCCCCCCHHHH---HHHHHHHH
Confidence 3445566677666542 12567889999999999998 444578887 899999999999994 45666665
Q ss_pred hhcCCCccceEeeccH-HHHHHHHHHHHHHcCCCC
Q 007480 285 SVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEI 318 (602)
Q Consensus 285 ~~~~pK~l~g~~ltG~-~l~~lv~~yv~aINsG~v 318 (602)
+. .+ .-..+++. .+...+.+.+-.|++|.+
T Consensus 389 ~~--~~--tviivsHd~~~l~~~~d~i~~l~~g~i 419 (718)
T PLN03073 389 KW--PK--TFIVVSHAREFLNTVVTDILHLHGQKL 419 (718)
T ss_pred Hc--CC--EEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 53 11 23455553 333444455556677876
No 367
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.93 E-value=2.8e-09 Score=99.92 Aligned_cols=44 Identities=23% Similarity=0.254 Sum_probs=39.9
Q ss_pred cccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcC
Q 007480 51 ETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWG 106 (602)
Q Consensus 51 ~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~ 106 (602)
.+|+++++.+ ++++|+|+||+|||||++.|+|. .++++| |++.+
T Consensus 14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~------------~~~~~G~i~~~~ 61 (144)
T cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGE------------LEPDEGIVTWGS 61 (144)
T ss_pred eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCC------------CCCCceEEEECC
Confidence 5889999888 99999999999999999999998 478999 88865
No 368
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.92 E-value=3.6e-09 Score=102.93 Aligned_cols=44 Identities=16% Similarity=0.167 Sum_probs=36.0
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcC
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWG 106 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~ 106 (602)
..++.+. +.+ ++++|+||||||||||+++|+|+ .+++.| |.+.+
T Consensus 13 ~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g 60 (177)
T cd03222 13 FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQ------------LIPNGDNDEWDG 60 (177)
T ss_pred EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcC------------CCCCCcEEEECC
Confidence 3455553 455 89999999999999999999998 488999 88765
No 369
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.91 E-value=2.2e-09 Score=104.37 Aligned_cols=34 Identities=29% Similarity=0.398 Sum_probs=30.1
Q ss_pred cccccccccccE---EEEEEECCCCCCHHHHHHHHHc
Q 007480 49 GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLS 82 (602)
Q Consensus 49 al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g 82 (602)
...+|+++++.+ ++++|+||||||||||||.+++
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 345789999988 8999999999999999999853
No 370
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.87 E-value=4.5e-09 Score=100.46 Aligned_cols=59 Identities=25% Similarity=0.356 Sum_probs=48.8
Q ss_pred eCCCcceEEeccc---cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcC
Q 007480 36 PDPGHTKLRLSRE---GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWG 106 (602)
Q Consensus 36 ~d~~~~~l~~~~e---al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~ 106 (602)
+.+...+|.++.. .+.+++++++.| ++|++-||+|+||||||+.|.+. ..++.| ||+-.
T Consensus 7 v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaN------------Y~~d~G~I~v~H 72 (235)
T COG4778 7 VSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYAN------------YLPDEGQILVRH 72 (235)
T ss_pred eecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhc------------cCCCCceEEEEe
Confidence 4455667777754 367889999998 99999999999999999999987 478999 99854
No 371
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.83 E-value=5.9e-09 Score=98.56 Aligned_cols=47 Identities=30% Similarity=0.504 Sum_probs=41.0
Q ss_pred cccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCccc
Q 007480 51 ETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPV 109 (602)
Q Consensus 51 ~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~ 109 (602)
.+++++++.+ ++++|+|+||+|||||++.|+|. .++++| |.+.+.++
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~------------~~~~~G~i~~~~~~~ 63 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL------------LKPTSGEILIDGKDI 63 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCccEEEECCEEc
Confidence 5888998888 79999999999999999999998 477899 88877544
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.71 E-value=3.7e-08 Score=97.27 Aligned_cols=64 Identities=14% Similarity=0.256 Sum_probs=40.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeecccc
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLDTEG 127 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~DteG 127 (602)
.+++|+||||+|||||++.|.|+.... -+........| +.+++...........+++++||+..
T Consensus 23 g~~~i~G~nGsGKStll~al~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~ 87 (197)
T cd03278 23 GLTAIVGPNGSGKSNIIDAIRWVLGEQ---SAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDG 87 (197)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhccc---cchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCC
Confidence 488999999999999999999873100 01111122345 55566554322234678999998744
No 373
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.69 E-value=5.6e-08 Score=117.89 Aligned_cols=209 Identities=18% Similarity=0.183 Sum_probs=135.1
Q ss_pred ceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc---cc
Q 007480 41 TKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM---EI 113 (602)
Q Consensus 41 ~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~---~~ 113 (602)
-++++.++.-.+|++|++.| +-|||||..|||||||++.|.++. .++.| |+++|.++.. ..
T Consensus 1144 ~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~------------e~~~G~I~IDgvdI~~igL~d 1211 (1381)
T KOG0054|consen 1144 LSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLV------------EPAEGEILIDGVDISKIGLHD 1211 (1381)
T ss_pred eEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhc------------CccCCeEEEcCeecccccHHH
Confidence 35667777778999999988 999999999999999999999984 56889 9999998764 23
Q ss_pred cCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCccc
Q 007480 114 DGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAK 193 (602)
Q Consensus 114 ~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~ 193 (602)
-+.+++++.||+..|. +|++.|+- -.+..+++++=+.++.++|.+.+.. .|.+
T Consensus 1212 LRsrlsIIPQdPvLFs----GTvR~NLD--------------Pf~e~sD~~IW~ALe~~~Lk~~v~~---------~p~~ 1264 (1381)
T KOG0054|consen 1212 LRSRLSIIPQDPVLFS----GTVRFNLD--------------PFDEYSDDEIWEALERCQLKDVVSS---------LPGG 1264 (1381)
T ss_pred HHhcCeeeCCCCceec----CccccccC--------------cccccCHHHHHHHHHHhChHHHHhh---------CCcC
Confidence 4788999999998874 35553321 0123344555555556666554431 1210
Q ss_pred chhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHH
Q 007480 194 LVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYV 273 (602)
Q Consensus 194 flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~ 273 (602)
+ +..+ .+.=+++|.|++|+..++ ++. |.+..+ .+.||.++..|++.
T Consensus 1265 L------------------d~~v--------~egG~N~SvGQRQLlCLA---RAL-Lr~skI---LvLDEATAsVD~~T- 1310 (1381)
T KOG0054|consen 1265 L------------------DSEV--------SEGGENFSVGQRQLLCLA---RAL-LRKSKI---LVLDEATASVDPET- 1310 (1381)
T ss_pred C------------------Ccee--------cCCCccCChHHHHHHHHH---HHH-hccCCE---EEEecccccCChHH-
Confidence 0 0000 112246788999998777 443 355555 67899999999996
Q ss_pred HHHHHH-HHHHhhhcCCCccceEeeccHHHHH-HHHHHHHHHcCCCCCCCcchHHHH
Q 007480 274 KRREQL-KKLVASVTRPKIVQGKFLNGNEFVA-FMEQILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 274 e~~~~L-~~~I~~~~~pK~l~g~~ltG~~l~~-lv~~yv~aINsG~vP~~~sl~e~~ 328 (602)
+.+ .+.|.+..+..|+ .++-++ +-+ +=.+.|-.+.+|.+-..+++.+..
T Consensus 1311 ---D~lIQ~tIR~~F~dcTV--ltIAHR-l~TVmd~DrVlVld~G~v~EfdsP~~Ll 1361 (1381)
T KOG0054|consen 1311 ---DALIQKTIREEFKDCTV--LTIAHR-LNTVMDSDRVLVLDAGRVVEFDSPAELL 1361 (1381)
T ss_pred ---HHHHHHHHHHHhcCCeE--EEEeec-cchhhhcCeEEEeeCCeEeecCChHHHH
Confidence 444 4556665554442 122221 111 112344556889888877776654
No 374
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.68 E-value=2.6e-07 Score=88.85 Aligned_cols=210 Identities=16% Similarity=0.190 Sum_probs=120.4
Q ss_pred cccEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEc
Q 007480 30 AFPIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVW 105 (602)
Q Consensus 30 ~iplv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~ 105 (602)
+.|++.+.+.+..+ ....-.+++++.+ +|++|+|.+||||||||++|.+. .+|+.| |.+.
T Consensus 3 ~~PLL~V~~lsk~Y----g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~r------------l~p~~G~v~Y~ 66 (258)
T COG4107 3 DKPLLSVSGLSKLY----GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR------------LTPDAGTVTYR 66 (258)
T ss_pred CCcceeehhhhhhh----CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcc------------cCCCCCeEEEE
Confidence 34566666543322 3344568888877 99999999999999999999997 488999 6553
Q ss_pred C---cccCc----c-----ccCcceEEEeeccc-cccccCCCCc--hhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHH
Q 007480 106 G---NPVEM----E-----IDGSRTSVFYLDTE-GFESIGKSNV--YDDRIFALATVMSSVLIYNLPETIREADISRLSF 170 (602)
Q Consensus 106 ~---~~~~~----~-----~~~~~~~vvl~Dte-G~~~~~~~tv--~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~ 170 (602)
. .+... + ..+.+.++|-|++. |+ ++++ -.|+---+
T Consensus 67 ~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGL----Rm~VSAG~NiGERl-------------------------- 116 (258)
T COG4107 67 MRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGL----RMQVSAGGNIGERL-------------------------- 116 (258)
T ss_pred cCCCCchhHhhhchHHHHHHhhhccceeecCccccc----eeeeccCCccchhH--------------------------
Confidence 3 22211 0 01234456655542 11 0110 00110000
Q ss_pred HHhhhhhhhcccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC--CCCCCCchhhhhHHHHHHhhcCCCcEE
Q 007480 171 AVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN--DKGDKNIDMVNQIRNSLAIMGDNSTAF 248 (602)
Q Consensus 171 ~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~--~~~~~~i~~ln~~r~~i~~~f~~~~cf 248 (602)
+-+=.|-+ | ...+-..+.|+.+.. ..-++.+..++++.++...++. -.
T Consensus 117 ------------------------ma~G~RHY--G-~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiAR---nL 166 (258)
T COG4107 117 ------------------------MAIGARHY--G-NIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIAR---NL 166 (258)
T ss_pred ------------------------Hhhhhhhh--h-hHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHH---Hh
Confidence 00000111 1 011112223333332 2235667788888888888873 22
Q ss_pred EccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HHHHHHHHHHHHcCCCCCCCc
Q 007480 249 SLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FVAFMEQILEALNKGEIPSTG 322 (602)
Q Consensus 249 ~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~~lv~~yv~aINsG~vP~~~ 322 (602)
..+|.+ .+.|||+.+||-.- ...|.+.+..+...-.+....+|+.. .+.++....-.+..|.+...+
T Consensus 167 -Vt~PrL---vfMDEPTGGLDVSV---QARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~G 234 (258)
T COG4107 167 -VTRPRL---VFMDEPTGGLDVSV---QARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234 (258)
T ss_pred -ccCCce---EEecCCCCCcchhh---HHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccc
Confidence 267877 78999999999776 34566666666555566677777743 345566666667777764443
No 375
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.67 E-value=3.8e-08 Score=107.97 Aligned_cols=163 Identities=17% Similarity=0.218 Sum_probs=99.5
Q ss_pred cccEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEc
Q 007480 30 AFPIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVW 105 (602)
Q Consensus 30 ~iplv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~ 105 (602)
|-|++...+.. |.++.+. -+++++++-+ .-|++|||||+||||||+.+.|. ..|+.| +--.
T Consensus 386 p~pvi~~~nv~--F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gd------------l~p~~G~vs~~ 450 (614)
T KOG0927|consen 386 PPPVIMVQNVS--FGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGD------------LQPTIGMVSRH 450 (614)
T ss_pred CCCeEEEeccc--cCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhc------------ccccccccccc
Confidence 34566666543 4444333 5778888776 88999999999999999999998 478888 4311
Q ss_pred CcccCccccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCc
Q 007480 106 GNPVEMEIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQ 185 (602)
Q Consensus 106 ~~~~~~~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e 185 (602)
.. ..++.+-|.. .+.+-. +.
T Consensus 451 ~H--------~~~~~y~Qh~---------------~e~ldl--------------~~----------------------- 470 (614)
T KOG0927|consen 451 SH--------NKLPRYNQHL---------------AEQLDL--------------DK----------------------- 470 (614)
T ss_pred cc--------ccchhhhhhh---------------HhhcCc--------------ch-----------------------
Confidence 10 1111111110 000000 00
Q ss_pred ccccCcccchhhhhhccCCcccHHHHHHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCC
Q 007480 186 DVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDM 263 (602)
Q Consensus 186 ~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~ 263 (602)
.| .-|++ +-|.+ .+..+-+...|...+.. ..+..+..+|.+++++..|+ .+.+.+|++ .++||
T Consensus 471 ----s~--le~~~-~~~~~-~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa----~l~~kqP~l---LlLDE 535 (614)
T KOG0927|consen 471 ----SS--LEFMM-PKFPD-EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFA----RLAVKQPHL---LLLDE 535 (614)
T ss_pred ----hH--HHHHH-Hhccc-cchHHHHHHHHHHhCCCccccccchhhcccccchhHHHH----HHHhcCCcE---EEecC
Confidence 00 11111 22221 23445555566655532 22566788999999988876 566789999 89999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhh
Q 007480 264 KDEELDPIYVKRREQLKKLVAS 285 (602)
Q Consensus 264 p~~~Ld~~F~e~~~~L~~~I~~ 285 (602)
|++.||-+. ++.+.+.|.+
T Consensus 536 PtnhLDi~t---id~laeaiNe 554 (614)
T KOG0927|consen 536 PTNHLDIET---IDALAEAINE 554 (614)
T ss_pred CCcCCCchh---HHHHHHHHhc
Confidence 999999999 5667767654
No 376
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.52 E-value=2.2e-07 Score=112.92 Aligned_cols=202 Identities=19% Similarity=0.253 Sum_probs=128.9
Q ss_pred EEeeCCCcceEEeccccc-cccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCc
Q 007480 33 IVEPDPGHTKLRLSREGL-ETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGN 107 (602)
Q Consensus 33 lv~~d~~~~~l~~~~eal-~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~ 107 (602)
-+.+++ ..+..+++.. ..|+||++.| +.++|+|+-|||||+||..|+|. .++++| +.+.|.
T Consensus 518 ~i~i~~--~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGE------------m~~~sG~v~v~gs 583 (1381)
T KOG0054|consen 518 AIEIKN--GSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGE------------MPKLSGSVAVNGS 583 (1381)
T ss_pred eEEEee--eeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcC------------cccccceEEEcCe
Confidence 455543 3466665433 3899999988 89999999999999999999998 488999 887753
Q ss_pred ccCccccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCccc
Q 007480 108 PVEMEIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDV 187 (602)
Q Consensus 108 ~~~~~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~ 187 (602)
++|+.|.+=-+ ++|++||++|+- ..+++.-++....+.|.+.+
T Consensus 584 ----------iaYv~Q~pWI~----ngTvreNILFG~--------------~~d~~rY~~Vi~aC~L~~Dl--------- 626 (1381)
T KOG0054|consen 584 ----------VAYVPQQPWIQ----NGTVRENILFGS--------------PYDEERYDKVIKACALKKDL--------- 626 (1381)
T ss_pred ----------EEEeccccHhh----CCcHHHhhhcCc--------------cccHHHHHHHHHHccCHhHH---------
Confidence 78888876555 569999999964 34666677776666665433
Q ss_pred ccCcccchhhhhhccCCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhc----CCCcEEEccCccchhcccCCC
Q 007480 188 AFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMG----DNSTAFSLPQPHLLRTKLCDM 263 (602)
Q Consensus 188 ~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f----~~~~cf~L~~P~~~~~~L~d~ 263 (602)
...|. .|-+ .++ ++. -++|+||+++.+++ .+.+.+.| |-
T Consensus 627 e~Lp~-------GD~T--------------eIG----ErG-inLSGGQKqRIsLARAVY~~adIYLL-----------DD 669 (1381)
T KOG0054|consen 627 EILPF-------GDLT--------------EIG----ERG-INLSGGQKQRISLARAVYQDADIYLL-----------DD 669 (1381)
T ss_pred hhcCC-------CCcc--------------eec----CCc-cCCcHhHHHHHHHHHHHhccCCEEEE-----------cC
Confidence 22332 1211 111 122 36899999987765 34444444 44
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHHHHHHHH--HHHHHHcCCCCCCCcchHHHH
Q 007480 264 KDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNEFVAFME--QILEALNKGEIPSTGSLVEVF 328 (602)
Q Consensus 264 p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~l~~lv~--~yv~aINsG~vP~~~sl~e~~ 328 (602)
|.+.+|..-- ..-+.+.|....+.|+ .+.+|+.. ++++ +.+-.+++|++-..|+..|..
T Consensus 670 plSAVDahvg--~~if~~ci~~~L~~KT--~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 670 PLSAVDAHVG--KHIFEECIRGLLRGKT--VILVTHQL--QFLPHADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred cchhhhHhhh--HHHHHHHHHhhhcCCE--EEEEeCch--hhhhhCCEEEEecCCeEecccCHHHHH
Confidence 5666666542 2234445544444444 35667622 2222 233344789998888876655
No 377
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.49 E-value=4.8e-07 Score=91.11 Aligned_cols=65 Identities=9% Similarity=0.002 Sum_probs=44.0
Q ss_pred CCCchhhhhHHHHHHhhcCCCcEEEccCc--cchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH
Q 007480 225 DKNIDMVNQIRNSLAIMGDNSTAFSLPQP--HLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN 300 (602)
Q Consensus 225 ~~~i~~ln~~r~~i~~~f~~~~cf~L~~P--~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~ 300 (602)
++.+.++|+++++...++ .+++ ..| .+ .+.|||++.||+... ..+.+.+.+..+ +...-..+++.
T Consensus 132 ~~~~~~LSgG~~qrv~la---ral~-~~p~~~l---lllDEPt~gLD~~~~---~~l~~~l~~~~~-~g~tii~itH~ 198 (226)
T cd03270 132 SRSAPTLSGGEAQRIRLA---TQIG-SGLTGVL---YVLDEPSIGLHPRDN---DRLIETLKRLRD-LGNTVLVVEHD 198 (226)
T ss_pred cCccCcCCHHHHHHHHHH---HHHH-hCCCCCE---EEEeCCccCCCHHHH---HHHHHHHHHHHh-CCCEEEEEEeC
Confidence 567788999999998887 4444 344 45 789999999999994 455555555432 22333455553
No 378
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.46 E-value=4.3e-07 Score=100.56 Aligned_cols=185 Identities=14% Similarity=0.082 Sum_probs=118.1
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeecc
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLDT 125 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~Dt 125 (602)
.-+++++++.| .-+-|+||+|||||.||+.|+|+. |+++| +..-...-+ .++-++.|-+
T Consensus 448 ~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLW------------p~~~G~l~k~~~~~~-----~~lfflPQrP 510 (659)
T KOG0060|consen 448 DLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLW------------PSTGGKLTKPTDGGP-----KDLFFLPQRP 510 (659)
T ss_pred ceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccc------------ccCCCeEEecccCCC-----CceEEecCCC
Confidence 33567789888 789999999999999999999996 78888 554322211 3456666654
Q ss_pred ccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCc
Q 007480 126 EGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQG 205 (602)
Q Consensus 126 eG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g 205 (602)
-- .-+|.+|.+++++.. .++..+..+.++|.+.++.++|....... ....|. -. -||.
T Consensus 511 Ym----t~GTLRdQvIYP~~~------~~~~~~~~~d~~i~r~Le~v~L~hl~~r~-----ggld~~-~~----~dW~-- 568 (659)
T KOG0060|consen 511 YM----TLGTLRDQVIYPLKA------EDMDSKSASDEDILRILENVQLGHLLERE-----GGLDQQ-VD----WDWM-- 568 (659)
T ss_pred Cc----cccchhheeeccCcc------ccccccCCCHHHHHHHHHHhhhhhHHHHh-----CCCCch-hh----ccHH--
Confidence 22 134889999998765 25666777788888877777765543211 111111 11 1332
Q ss_pred ccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhh
Q 007480 206 KSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVAS 285 (602)
Q Consensus 206 ~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~ 285 (602)
+.+|.+++|+.+++ +.|- ..|.. -++||.++.++.+--. .+.+
T Consensus 569 -----------------------dvLS~GEqQRLa~A---RLfy-~kPk~---AiLDE~TSAv~~dvE~-------~~Yr 611 (659)
T KOG0060|consen 569 -----------------------DVLSPGEQQRLAFA---RLFY-HKPKF---AILDECTSAVTEDVEG-------ALYR 611 (659)
T ss_pred -----------------------hhcCHHHHHHHHHH---HHHh-cCCce---EEeechhhhccHHHHH-------HHHH
Confidence 35677888888887 5554 77887 7889999999877522 2333
Q ss_pred hcCCCccceEeeccHHHHHHHHHHH
Q 007480 286 VTRPKIVQGKFLNGNEFVAFMEQIL 310 (602)
Q Consensus 286 ~~~pK~l~g~~ltG~~l~~lv~~yv 310 (602)
.++...++=..|.++.-..-..+|+
T Consensus 612 ~~r~~giT~iSVgHRkSL~kfHd~~ 636 (659)
T KOG0060|consen 612 KCREMGITFISVGHRKSLWKFHDYV 636 (659)
T ss_pred HHHHcCCeEEEeccHHHHHhhhhEE
Confidence 3344455545566654333333433
No 379
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.46 E-value=1.9e-07 Score=95.33 Aligned_cols=187 Identities=16% Similarity=0.150 Sum_probs=97.8
Q ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCC-cc-eEEcCc-ccC-----ccccCcceEEEeecccc----
Q 007480 60 IAAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKT-KG-IWVWGN-PVE-----MEIDGSRTSVFYLDTEG---- 127 (602)
Q Consensus 60 V~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~T-kG-Iwi~~~-~~~-----~~~~~~~~~vvl~DteG---- 127 (602)
-.+++|+||||||||||+..|.+.+ .++ .| +...+. ++. .......+.+++++..+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll------------~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~ 92 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVL------------GITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSP 92 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh------------cccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCc
Confidence 3688999999999999999999874 222 12 222222 110 01124578899988532
Q ss_pred --ccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCc
Q 007480 128 --FESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQG 205 (602)
Q Consensus 128 --~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g 205 (602)
....+..++.+++.... .+....|-. ....+++..+...+++. +.+..++| + +|
T Consensus 93 ~~~~~~~~ltV~r~I~~~~----~~~~~in~~-~~~~~~v~~~L~~vgL~---------------~~~~~~~i-~---Qg 148 (251)
T cd03273 93 IGFENYPEITVTRQIVLGG----TNKYLINGH-RAQQQRVQDLFQSVQLN---------------VNNPHFLI-M---QG 148 (251)
T ss_pred ccccCCceEEEEEEEEcCC----ceEEEECCE-EeeHHHHHHHHHHcCCC---------------CCCceEEE-e---eh
Confidence 12223455655544322 111111211 12234444444444431 10011111 1 33
Q ss_pred ccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEE---ccCccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 007480 206 KSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFS---LPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 206 ~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~---L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~ 282 (602)
. +++.+.... ..+..+.+++++++++..++ .++. +..|.+ .+.|||++.||+... +.+.+.
T Consensus 149 ~-----v~~~~~~~~--~~~~~~~~lS~G~~qr~~la---~al~~~~~~~~~i---lllDEPt~~ld~~~~---~~~~~~ 212 (251)
T cd03273 149 R-----ITKVLNMGG--VWKESLTELSGGQRSLVALS---LILALLLFKPAPM---YILDEVDAALDLSHT---QNIGRM 212 (251)
T ss_pred H-----HHHHHHhHH--hhcccccccCHHHHHHHHHH---HHHHHhhccCCCE---EEEeCCCcCCCHHHH---HHHHHH
Confidence 2 222222111 11345678999999988887 3332 134555 789999999999994 456566
Q ss_pred HhhhcCCCccceEeeccH
Q 007480 283 VASVTRPKIVQGKFLNGN 300 (602)
Q Consensus 283 I~~~~~pK~l~g~~ltG~ 300 (602)
+.+.. +...-..+++.
T Consensus 213 l~~~~--~g~~ii~iSH~ 228 (251)
T cd03273 213 IKTHF--KGSQFIVVSLK 228 (251)
T ss_pred HHHHc--CCCEEEEEECC
Confidence 65542 23334566664
No 380
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.45 E-value=3.4e-07 Score=97.44 Aligned_cols=47 Identities=34% Similarity=0.384 Sum_probs=41.5
Q ss_pred cccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc
Q 007480 53 IRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM 111 (602)
Q Consensus 53 L~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~ 111 (602)
+..||..+ ++|-|+|.||||||||+..|.|+ ..|.+| |.++|+|+..
T Consensus 339 vgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL------------~~PqsG~I~ldg~pV~~ 389 (546)
T COG4615 339 VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGL------------YQPQSGEILLDGKPVSA 389 (546)
T ss_pred ecceeeEEecCcEEEEECCCCCcHHHHHHHHhcc------------cCCCCCceeECCccCCC
Confidence 55677777 99999999999999999999999 488899 9999999864
No 381
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.41 E-value=4.4e-07 Score=90.12 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=21.3
Q ss_pred cccEEEEEEECCCCCCHHHHHHHHH
Q 007480 57 TNPIAAIAVIGPYRSGKSFLLNQLL 81 (602)
Q Consensus 57 s~~V~vVsIvG~~gsGKStLLn~L~ 81 (602)
+++..+++|+||||+|||||++.|.
T Consensus 19 ~~~~g~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 19 EFFSPLTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHH
Confidence 3333599999999999999999995
No 382
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.38 E-value=1.9e-06 Score=94.57 Aligned_cols=168 Identities=15% Similarity=0.120 Sum_probs=105.9
Q ss_pred cccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcceEEcCcccCccccCcceEEEeecccccc
Q 007480 53 IRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 129 (602)
Q Consensus 53 L~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~~ 129 (602)
...+++.| .-+-|.||||||||.|.++|.|+. |...|...-. - ...+-++.|-+--
T Consensus 498 v~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLW------------Pvy~g~L~~P--~-----~~~mFYIPQRPYm-- 556 (728)
T KOG0064|consen 498 VPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLW------------PVYNGLLSIP--R-----PNNIFYIPQRPYM-- 556 (728)
T ss_pred ecceeEEecCCceEEEECCCCccHHHHHHHHhccC------------cccCCeeecC--C-----CcceEeccCCCcc--
Confidence 34455555 567899999999999999999995 5566643221 1 1336666665422
Q ss_pred ccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccCCcccHH
Q 007480 130 SIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQ 209 (602)
Q Consensus 130 ~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~~g~t~~ 209 (602)
+ .+|.+|.+|+.-+. -... .+.+.++++..++..+.|..-. .+- -.|=.+|||.+
T Consensus 557 s--~gtlRDQIIYPdS~----e~~~--~kg~~d~dL~~iL~~v~L~~i~-qr~-----------~g~da~~dWkd----- 611 (728)
T KOG0064|consen 557 S--GGTLRDQIIYPDSS----EQMK--RKGYTDQDLEAILDIVHLEHIL-QRE-----------GGWDAVRDWKD----- 611 (728)
T ss_pred C--cCcccceeecCCcH----HHHH--hcCCCHHHHHHHHHHhhHHHHH-Hhc-----------cChhhhccHHh-----
Confidence 2 45778888876433 1111 2356678888888887775332 221 12555688862
Q ss_pred HHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCC
Q 007480 210 EMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRP 289 (602)
Q Consensus 210 eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~p 289 (602)
.++++.+|+..++ +.|- .+|.. -++||-++...++- ...|++.++.
T Consensus 612 --------------------~LsgGekQR~~mA---Rm~y-HrPky---alLDEcTsAvsidv-------E~~i~~~ak~ 657 (728)
T KOG0064|consen 612 --------------------VLSGGEKQRMGMA---RMFY-HRPKY---ALLDECTSAVSIDV-------EGKIFQAAKD 657 (728)
T ss_pred --------------------hccchHHHHHHHH---HHHh-cCcch---hhhhhhhcccccch-------HHHHHHHHHh
Confidence 3456666666666 4443 78877 77888888776664 3467777666
Q ss_pred CccceEeeccH
Q 007480 290 KIVQGKFLNGN 300 (602)
Q Consensus 290 K~l~g~~ltG~ 300 (602)
-.++-..+|++
T Consensus 658 ~gi~llsithr 668 (728)
T KOG0064|consen 658 AGISLLSITHR 668 (728)
T ss_pred cCceEEEeecC
Confidence 66666677773
No 383
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.38 E-value=3.6e-07 Score=91.02 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=40.5
Q ss_pred CCchhhhhHHHHHHhhcCCCcEEEc---------cCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEe
Q 007480 226 KNIDMVNQIRNSLAIMGDNSTAFSL---------PQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKF 296 (602)
Q Consensus 226 ~~i~~ln~~r~~i~~~f~~~~cf~L---------~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ 296 (602)
+.+..+++++++...++ .+++. ..|.. .+.|||++.||+... +.+.+.+.+..+ +...-..
T Consensus 119 ~~~~~lS~G~~~r~~la---~al~~~p~~~~~~~~~~~~---lllDEp~~~lD~~~~---~~~~~~l~~~~~-~~~tii~ 188 (213)
T cd03279 119 RPVSTLSGGETFLASLS---LALALSEVLQNRGGARLEA---LFIDEGFGTLDPEAL---EAVATALELIRT-ENRMVGV 188 (213)
T ss_pred CCccccCHHHHHHHHHH---HHHHhHHHhhhccCCCCCE---EEEeCCcccCCHHHH---HHHHHHHHHHHh-CCCEEEE
Confidence 44567888888887776 44432 13444 788999999999995 455555655432 2233445
Q ss_pred ecc
Q 007480 297 LNG 299 (602)
Q Consensus 297 ltG 299 (602)
+|+
T Consensus 189 itH 191 (213)
T cd03279 189 ISH 191 (213)
T ss_pred EEC
Confidence 665
No 384
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=4e-07 Score=97.66 Aligned_cols=160 Identities=15% Similarity=0.171 Sum_probs=102.9
Q ss_pred eEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc---ccc
Q 007480 42 KLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM---EID 114 (602)
Q Consensus 42 ~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~---~~~ 114 (602)
.|.+++ ...+|+++++.+ +.++|+|++|+||||+++.|.+. ...+.| |.+.++++.. ..-
T Consensus 269 ~F~y~~-~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRF------------yD~~sG~I~id~qdir~vtq~sl 335 (497)
T COG5265 269 SFAYDP-RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRF------------YDVNSGSITIDGQDIRDVTQQSL 335 (497)
T ss_pred Eeeccc-cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHH------------hCCcCceEEEcchhHHHhHHHHH
Confidence 344444 456899999877 99999999999999999999998 478999 9999988753 224
Q ss_pred CcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccc
Q 007480 115 GSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKL 194 (602)
Q Consensus 115 ~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~f 194 (602)
++-++++.||+..|+| |..-|+.++- ....++++.......++.+.+ ...|.
T Consensus 336 R~aIg~VPQDtvLFND----ti~yni~ygr-------------~~at~eev~aaa~~aqi~~fi---------~~lP~-- 387 (497)
T COG5265 336 RRAIGIVPQDTVLFND----TIAYNIKYGR-------------PDATAEEVGAAAEAAQIHDFI---------QSLPE-- 387 (497)
T ss_pred HHHhCcCcccceehhh----hHHHHHhccC-------------ccccHHHHHHHHHHhhhhHHH---------HhCch--
Confidence 6778999999988864 3333333221 112223333333333332222 12232
Q ss_pred hhhhhhccCCcc-cHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHH
Q 007480 195 VWLIQRDFLQGK-SVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYV 273 (602)
Q Consensus 195 lw~vvRDf~~g~-t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~ 273 (602)
|- | .++ ++ --.++++++|+.+++ +. .|..|.+ .+.||.++.||...-
T Consensus 388 ----------gy~t----------~Vg----er-glklSggekqrvaia---r~-ilk~p~i---l~~deatsaldt~te 435 (497)
T COG5265 388 ----------GYDT----------GVG----ER-GLKLSGGEKQRVAIA---RT-ILKNPPI---LILDEATSALDTHTE 435 (497)
T ss_pred ----------hhhc----------ccc----hh-eeeccCchHHHHHHH---HH-HhcCCCE---EEEehhhhHhhhhHH
Confidence 21 0 011 01 124677888888887 33 3477877 789999999998874
Q ss_pred H
Q 007480 274 K 274 (602)
Q Consensus 274 e 274 (602)
+
T Consensus 436 ~ 436 (497)
T COG5265 436 Q 436 (497)
T ss_pred H
Confidence 3
No 385
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.28 E-value=3e-06 Score=81.72 Aligned_cols=104 Identities=13% Similarity=0.171 Sum_probs=59.7
Q ss_pred CCchhhhhHHHHHHhhcCCCcEEEccCccchhc---ccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHHH
Q 007480 226 KNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRT---KLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNEF 302 (602)
Q Consensus 226 ~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~---~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~l 302 (602)
+.+..++++.=++..++ ..+.-..|..+.. .+.|||.+.||-.-.. .|-..+.+.+..- + .+.+.+..+
T Consensus 121 Rs~~qLSGGEWQRVRLA---av~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~---aLdrll~~~c~~G-~-~vims~HDL 192 (248)
T COG4138 121 RSTNQLSGGEWQRVRLA---AVVLQITPDANPAGQLLLLDEPMNSLDVAQQS---ALDRLLSALCQQG-L-AIVMSSHDL 192 (248)
T ss_pred hhhhhcCcccceeeEEe---EEEEEecCCCCccceeEEecCCCcchhHHHHH---HHHHHHHHHHhCC-c-EEEEeccch
Confidence 34555666665555555 3555567877652 4679999999977533 3444444444321 1 134444443
Q ss_pred HHHHH--HHHHHHcCCCCCCCcchHHHHhHHHHHHHH
Q 007480 303 VAFME--QILEALNKGEIPSTGSLVEVFNKGILERCL 337 (602)
Q Consensus 303 ~~lv~--~yv~aINsG~vP~~~sl~e~~n~~av~~a~ 337 (602)
-.-+. .-+=.+..|.+-..++-.|+.....+..++
T Consensus 193 NhTLrhA~~~wLL~rG~l~~~G~~~eVlt~~vL~q~f 229 (248)
T COG4138 193 NHTLRHAHRAWLLKRGKLLASGRREEVLTPPVLAQAY 229 (248)
T ss_pred hhHHHHHHHHHHHhcCeEEeecchhhhcChHHHHHHh
Confidence 33222 223445788888888877777666665543
No 386
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.25 E-value=1e-05 Score=89.40 Aligned_cols=98 Identities=15% Similarity=0.132 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhCCC--CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhh
Q 007480 208 VQEMVHDALQRVPN--DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVAS 285 (602)
Q Consensus 208 ~~eyLe~aL~~~~~--~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~ 285 (602)
.+..+-++|...+- ...++.+.++|+|++.+.+++ +. ++..|.+ .|.|+|++.||++.+..+ -+++.+
T Consensus 197 ~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLA---r~-Lf~kP~L---LLLDEPtnhLDleA~~wL---ee~L~k 266 (614)
T KOG0927|consen 197 FEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALA---RA-LFQKPDL---LLLDEPTNHLDLEAIVWL---EEYLAK 266 (614)
T ss_pred HHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHH---HH-HhcCCCE---EEecCCccCCCHHHHHHH---HHHHHh
Confidence 33344445544332 222566778999999988887 33 3478998 899999999999996544 444444
Q ss_pred hcCCCccceEeeccHHHHHHHHHHHHHHcCCC
Q 007480 286 VTRPKIVQGKFLNGNEFVAFMEQILEALNKGE 317 (602)
Q Consensus 286 ~~~pK~l~g~~ltG~~l~~lv~~yv~aINsG~ 317 (602)
.-++ .-........+..-+++-+-.+.++.
T Consensus 267 ~d~~--~lVi~sh~QDfln~vCT~Ii~l~~kk 296 (614)
T KOG0927|consen 267 YDRI--ILVIVSHSQDFLNGVCTNIIHLDNKK 296 (614)
T ss_pred ccCc--eEEEEecchhhhhhHhhhhheecccc
Confidence 3332 11223333455444444444444444
No 387
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.23 E-value=1.3e-06 Score=90.24 Aligned_cols=78 Identities=13% Similarity=-0.001 Sum_probs=49.6
Q ss_pred HHHHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEcc--CccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 007480 212 VHDALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSLP--QPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVT 287 (602)
Q Consensus 212 Le~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L~--~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~ 287 (602)
..++|+.++.. ..++.+.++|++++++.+++ .++... .|.+ .+.|||+.+||+..+ ..+.+.+.++.
T Consensus 149 ~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LA---raL~~~~~~p~l---llLDEPtsgLD~~~~---~~l~~~L~~l~ 219 (261)
T cd03271 149 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLA---KELSKRSTGKTL---YILDEPTTGLHFHDV---KKLLEVLQRLV 219 (261)
T ss_pred HHHHHHHcCCchhhhcCccccCCHHHHHHHHHH---HHHhcCCCCCcE---EEEECCCCCCCHHHH---HHHHHHHHHHH
Confidence 34566666542 23567889999999998887 444322 2555 789999999999995 45555555543
Q ss_pred CCCccceEeecc
Q 007480 288 RPKIVQGKFLNG 299 (602)
Q Consensus 288 ~pK~l~g~~ltG 299 (602)
+ +...-..+++
T Consensus 220 ~-~g~tvIiitH 230 (261)
T cd03271 220 D-KGNTVVVIEH 230 (261)
T ss_pred h-CCCEEEEEeC
Confidence 2 2223344555
No 388
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=4.6e-06 Score=91.52 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=56.3
Q ss_pred CCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeecc-HHHHH
Q 007480 226 KNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNG-NEFVA 304 (602)
Q Consensus 226 ~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG-~~l~~ 304 (602)
+.+.++|++++...+++ ++ ++..|.+ +|+|||++.||-.- +.=|-.|+.+. + .+-.+|.+ ..|.+
T Consensus 194 ~pt~slSGGWrMrlaLA---RA-lf~~pDl---LLLDEPTNhLDv~a---v~WLe~yL~t~---~-~T~liVSHDr~FLn 259 (582)
T KOG0062|consen 194 QPTKSLSGGWRMRLALA---RA-LFAKPDL---LLLDEPTNHLDVVA---VAWLENYLQTW---K-ITSLIVSHDRNFLN 259 (582)
T ss_pred ccccccCcchhhHHHHH---HH-HhcCCCE---EeecCCcccchhHH---HHHHHHHHhhC---C-ceEEEEeccHHHHH
Confidence 45678899999888887 33 3478998 89999999999887 44556666543 2 34455555 67888
Q ss_pred HHHHHHHHHcCCCC
Q 007480 305 FMEQILEALNKGEI 318 (602)
Q Consensus 305 lv~~yv~aINsG~v 318 (602)
-+++++-..++-.+
T Consensus 260 ~V~tdIIH~~~~kL 273 (582)
T KOG0062|consen 260 TVCTDIIHLENLKL 273 (582)
T ss_pred HHHHHHHHHhhhhh
Confidence 88887777766444
No 389
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.11 E-value=6.3e-06 Score=83.30 Aligned_cols=54 Identities=17% Similarity=0.330 Sum_probs=39.8
Q ss_pred CCCchhhhhHHHHHHhhcCCCcEEEc---cCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 007480 225 DKNIDMVNQIRNSLAIMGDNSTAFSL---PQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVT 287 (602)
Q Consensus 225 ~~~i~~ln~~r~~i~~~f~~~~cf~L---~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~ 287 (602)
++.+..+++++++...++ .+++. ..|.+ .+.|||++.|||... ..+.+.+.+..
T Consensus 153 ~~~~~~lS~G~~~r~~la---~~l~~~~~~~~~i---lllDEp~~~ld~~~~---~~~~~~l~~~~ 209 (243)
T cd03272 153 QQEMQQLSGGQKSLVALA---LIFAIQKCDPAPF---YLFDEIDAALDAQYR---TAVANMIKELS 209 (243)
T ss_pred cccccccCHHHHHHHHHH---HHHHHhccCCCCE---EEEECCccCCCHHHH---HHHHHHHHHHh
Confidence 356778999999998887 55542 34566 789999999999994 45566665553
No 390
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.10 E-value=1.8e-06 Score=86.27 Aligned_cols=64 Identities=22% Similarity=0.189 Sum_probs=41.6
Q ss_pred CCchhhhhHHHHHHhhcCCCcEEEcc---CccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH
Q 007480 226 KNIDMVNQIRNSLAIMGDNSTAFSLP---QPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN 300 (602)
Q Consensus 226 ~~i~~ln~~r~~i~~~f~~~~cf~L~---~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~ 300 (602)
+.+..+++++++...++ .++.+. .|.. .+.|||+.+|||... ..+.+.+.+..+ ...-..+++.
T Consensus 123 ~~~~~lS~G~~~r~~la---~al~~~~~~~p~i---lilDEPt~gLD~~~~---~~l~~~l~~~~~--~~~~iivs~~ 189 (212)
T cd03274 123 KNISNLSGGEKTLSSLA---LVFALHHYKPTPL---YVMDEIDAALDFRNV---SIVANYIKERTK--NAQFIVISLR 189 (212)
T ss_pred cchhhcCHHHHHHHHHH---HHHHhcccCCCCE---EEEcCCCcCCCHHHH---HHHHHHHHHHcC--CCEEEEEECc
Confidence 44667888888887776 444332 3555 789999999999994 566666665532 2223455543
No 391
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.06 E-value=1.3e-05 Score=90.59 Aligned_cols=181 Identities=15% Similarity=0.135 Sum_probs=110.5
Q ss_pred cccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEe
Q 007480 47 REGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFY 122 (602)
Q Consensus 47 ~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl 122 (602)
+++...|++.++.+ +-+-|.|++|||||||++.|+|+. |-.+| |-+- .+.+.-++.
T Consensus 403 p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW------------P~g~G~I~~P--------~~~~~lflp 462 (604)
T COG4178 403 PDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW------------PWGSGRISMP--------ADSALLFLP 462 (604)
T ss_pred CCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC------------ccCCCceecC--------CCCceEEec
Confidence 34456778888777 889999999999999999999985 44556 4322 123344554
Q ss_pred eccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhcc
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 ~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf 202 (602)
|-+- ++.+|-+|.+.++- ......++++.+.+..++|.+....
T Consensus 463 Q~PY----~p~GtLre~l~YP~-----------~~~~~~d~~l~~vL~~vgL~~L~~r---------------------- 505 (604)
T COG4178 463 QRPY----LPQGTLREALCYPN-----------AAPDFSDAELVAVLHKVGLGDLAER---------------------- 505 (604)
T ss_pred CCCC----CCCccHHHHHhCCC-----------CCCCCChHHHHHHHHHcCcHHHHHH----------------------
Confidence 4432 23556677666533 2223666667666666666544321
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 007480 203 LQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~ 282 (602)
|+.. ++--..++.+++|+.+|+ +. .+..|.. ...||.++.||++-. +.+-+.
T Consensus 506 -------------l~~~-----~~W~~vLS~GEqQRlafA---Ri-lL~kP~~---v~LDEATsALDe~~e---~~l~q~ 557 (604)
T COG4178 506 -------------LDEE-----DRWDRVLSGGEQQRLAFA---RL-LLHKPKW---VFLDEATSALDEETE---DRLYQL 557 (604)
T ss_pred -------------Hhcc-----CcHhhhcChhHHHHHHHH---HH-HHcCCCE---EEEecchhccChHHH---HHHHHH
Confidence 1000 111235678889999988 44 4588988 889999999999983 445555
Q ss_pred HhhhcCCCccceEeecc-HHHHHHHHHHHHHHc
Q 007480 283 VASVTRPKIVQGKFLNG-NEFVAFMEQILEALN 314 (602)
Q Consensus 283 I~~~~~pK~l~g~~ltG-~~l~~lv~~yv~aIN 314 (602)
+.+.+ .+..-+.+.+ +.+..+-...++...
T Consensus 558 l~~~l--p~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 558 LKEEL--PDATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred HHhhC--CCCEEEEeccchhhHHHHhhheeecc
Confidence 55433 2333333444 344444444444443
No 392
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.94 E-value=1.1e-05 Score=72.36 Aligned_cols=68 Identities=13% Similarity=0.079 Sum_probs=46.6
Q ss_pred cccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCcc---ccCcceEEEee
Q 007480 51 ETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME---IDGSRTSVFYL 123 (602)
Q Consensus 51 ~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~---~~~~~~~vvl~ 123 (602)
.+|+++++.+ ++++|+||+|||||||++++. +| +++.+.++..- ..++..+++.+
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------------------~G~i~~~g~di~~~~~~~~~~~~~~~~q 64 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------------------KRKHRLVGDDNVEIREDSKDELIGRNPE 64 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------------------CCeEEEeeEeHHHhhhhhcCCEEEEech
Confidence 4678888877 899999999999999999974 34 77777665421 12233444444
Q ss_pred ccccccccCCCCchhHHHH
Q 007480 124 DTEGFESIGKSNVYDDRIF 142 (602)
Q Consensus 124 DteG~~~~~~~tv~d~~if 142 (602)
+ ++. .+++||+.+
T Consensus 65 ~--lf~----~ti~~Ni~~ 77 (107)
T cd00820 65 L--GLE----IRLRLNIFL 77 (107)
T ss_pred h--cch----hhHHhhcee
Confidence 3 553 477787765
No 393
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=2.6e-05 Score=84.07 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=38.5
Q ss_pred CchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 007480 227 NIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASV 286 (602)
Q Consensus 227 ~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~ 286 (602)
.+..++++++.+.+++ -+.+..|.. .++|+|++.||.+. ++.|...|.+.
T Consensus 701 kikdLSGGQKaRVala----eLal~~PDv---lILDEPTNNLDIES---IDALaEAIney 750 (807)
T KOG0066|consen 701 KIKDLSGGQKARVALA----ELALGGPDV---LILDEPTNNLDIES---IDALAEAINEY 750 (807)
T ss_pred eeeecCCcchHHHHHH----HHhcCCCCE---EEecCCCCCcchhh---HHHHHHHHHhc
Confidence 4667888998888877 334577887 88999999999988 66777666543
No 394
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=97.87 E-value=5.9e-05 Score=83.83 Aligned_cols=194 Identities=12% Similarity=0.207 Sum_probs=129.9
Q ss_pred ccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccc----cCcceEEEee
Q 007480 52 TIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEI----DGSRTSVFYL 123 (602)
Q Consensus 52 iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~----~~~~~~vvl~ 123 (602)
.++++++.+ +|+||.|.-|+|+|=|++.|+|. .+...| |.+.|+++.... ....++++.-
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~------------~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~E 341 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGA------------RPASSGEILLDGKPVRIRSPRDAIKAGIAYVPE 341 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCC------------CcCCCceEEECCEEccCCCHHHHHHcCCEeCCc
Confidence 478899888 99999999999999999999997 477889 999999887532 2456788888
Q ss_pred ccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccccCcccchhhhhhccC
Q 007480 124 DTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFL 203 (602)
Q Consensus 124 DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~f~P~~flw~vvRDf~ 203 (602)
|-..-+.+...++.+|+.++ .. . .+.+. + ++
T Consensus 342 DRk~~Gl~l~~sI~~Ni~l~-~l--~--------------------------------------~~~~~-~--~i----- 372 (500)
T COG1129 342 DRKSEGLVLDMSIAENITLA-SL--R--------------------------------------RFSRR-G--LI----- 372 (500)
T ss_pred ccccCcCcCCCcHHHheehH-hh--h--------------------------------------hhccc-c--cc-----
Confidence 86555555677888888775 11 0 00000 1 11
Q ss_pred CcccHHHHHHHHHHhCCC--CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHH
Q 007480 204 QGKSVQEMVHDALQRVPN--DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKK 281 (602)
Q Consensus 204 ~g~t~~eyLe~aL~~~~~--~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~ 281 (602)
+.....+..+.+.+.... +..+..+..+|++-+|...++ +++. ..|.+ .++|+|+.++|-.-.. ++-+
T Consensus 373 ~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvla---rwL~-~~p~v---LilDEPTRGIDVGAK~---eIy~ 442 (500)
T COG1129 373 DRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLA---RWLA-TDPKV---LILDEPTRGIDVGAKA---EIYR 442 (500)
T ss_pred ChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHH---HHHh-cCCCE---EEECCCCcCcccchHH---HHHH
Confidence 222333444444444332 333577889999999988888 7776 56777 8999999999998854 4444
Q ss_pred HHhhhcCCCccceEeeccHHHHHH--HHHHHHHHcCCCC
Q 007480 282 LVASVTRPKIVQGKFLNGNEFVAF--MEQILEALNKGEI 318 (602)
Q Consensus 282 ~I~~~~~pK~l~g~~ltG~~l~~l--v~~yv~aINsG~v 318 (602)
.|.++++. ...-..++. .+.++ +++.+-.++.|.+
T Consensus 443 li~~lA~~-G~ail~iSS-ElpEll~~~DRIlVm~~Gri 479 (500)
T COG1129 443 LIRELAAE-GKAILMISS-ELPELLGLSDRILVMREGRI 479 (500)
T ss_pred HHHHHHHC-CCEEEEEeC-ChHHHHhhCCEEEEEECCEE
Confidence 55555432 333334443 44443 4566667788765
No 395
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.86 E-value=2.7e-05 Score=79.43 Aligned_cols=65 Identities=14% Similarity=0.185 Sum_probs=43.5
Q ss_pred CCchhhhhHHHHHHhhcCCCcEEEcc---CccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccH
Q 007480 226 KNIDMVNQIRNSLAIMGDNSTAFSLP---QPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN 300 (602)
Q Consensus 226 ~~i~~ln~~r~~i~~~f~~~~cf~L~---~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~ 300 (602)
+.+.+++.++++...++ .+++.. .|.. .+.|||++.||+.. ...+.+.+.+..+. ...-..+++.
T Consensus 151 ~~~~~LS~G~k~rl~la---~al~~~~~~~p~~---lllDEPt~~LD~~~---~~~l~~~i~~~~~~-g~~vi~isH~ 218 (247)
T cd03275 151 RDMDNLSGGEKTMAALA---LLFAIHSYQPAPF---FVLDEVDAALDNTN---VGKVASYIREQAGP-NFQFIVISLK 218 (247)
T ss_pred hhHHHcCHHHHHHHHHH---HHHHHhccCCCCE---EEEecccccCCHHH---HHHHHHHHHHhccC-CcEEEEEECC
Confidence 45677889988888777 444432 3555 78999999999999 45566666665432 3334566664
No 396
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=2.9e-05 Score=85.44 Aligned_cols=189 Identities=20% Similarity=0.225 Sum_probs=111.8
Q ss_pred cEEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcceEEcCcc
Q 007480 32 PIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNP 108 (602)
Q Consensus 32 plv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkGIwi~~~~ 108 (602)
|++.+.+.. |..+++.-+.+.+.+..+ .-++++|++|.||||+++++.+. ..+++||..-.
T Consensus 361 p~l~i~~V~--f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~------------l~~~rgi~~~~-- 424 (582)
T KOG0062|consen 361 PNLRISYVA--FEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGD------------LTPTRGIVGRH-- 424 (582)
T ss_pred CeeEEEeee--ccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhcc------------CCcccceeeec--
Confidence 344444332 555554445777777766 67899999999999999999996 36788944221
Q ss_pred cCccccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhcccCCcccc
Q 007480 109 VEMEIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVA 188 (602)
Q Consensus 109 ~~~~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~~~~~e~~~ 188 (602)
.+.++++..|...-+ +.+.+ ++++.+ +
T Consensus 425 -----~r~ri~~f~Qhhvd~-------------l~~~v----------------~~vd~~-------~------------ 451 (582)
T KOG0062|consen 425 -----PRLRIKYFAQHHVDF-------------LDKNV----------------NAVDFM-------E------------ 451 (582)
T ss_pred -----ccceecchhHhhhhH-------------HHHHh----------------HHHHHH-------H------------
Confidence 134566665533211 00000 001100 0
Q ss_pred cCcccchhhhhhccCCcccHHHHHHHHHHhCCC--CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCC
Q 007480 189 FEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN--DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDE 266 (602)
Q Consensus 189 f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~--~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~ 266 (602)
+-| .|.++.+| +..|...+. +.+...+..+|++++....|+ +.++.+|++ .++|||++
T Consensus 452 -----------~~~-pG~~~ee~-r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA----~~~~~~Phl---LVLDEPTN 511 (582)
T KOG0062|consen 452 -----------KSF-PGKTEEEI-RRHLGSFGLSGELALQSIASLSGGQKSRVAFA----ACTWNNPHL---LVLDEPTN 511 (582)
T ss_pred -----------HhC-CCCCHHHH-HHHHHhcCCCchhhhccccccCCcchhHHHHH----HHhcCCCcE---EEecCCCc
Confidence 011 34443333 344444443 333445788999999999998 777899999 89999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCCccce--Eeecc-HHHHHHHHHHHHHHcCCCC
Q 007480 267 ELDPIYVKRREQLKKLVASVTRPKIVQG--KFLNG-NEFVAFMEQILEALNKGEI 318 (602)
Q Consensus 267 ~Ld~~F~e~~~~L~~~I~~~~~pK~l~g--~~ltG-~~l~~lv~~yv~aINsG~v 318 (602)
.||.+. ++.|.+-+. .++| ..|++ ..|...++.=+=+.++|.+
T Consensus 512 hLD~ds---l~AL~~Al~------~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~v 557 (582)
T KOG0062|consen 512 HLDRDS---LGALAKALK------NFNGGVVLVSHDEEFISSLCKELWVVEDGKV 557 (582)
T ss_pred cccHHH---HHHHHHHHH------hcCCcEEEEECcHHHHhhcCceeEEEcCCcE
Confidence 999998 566665553 3454 34555 3343332222223356665
No 397
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.73 E-value=0.00015 Score=71.76 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=38.4
Q ss_pred CCCchhhhhHHHHHHhhcCCCcEEE---ccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 007480 225 DKNIDMVNQIRNSLAIMGDNSTAFS---LPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVT 287 (602)
Q Consensus 225 ~~~i~~ln~~r~~i~~~f~~~~cf~---L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~ 287 (602)
++.+.+++++++++..++ .++. +..|.. .+.|||+..||+... ..+.+.+.+..
T Consensus 104 ~~~~~~lS~G~k~r~~ia---~al~~~~~~~p~i---lllDEP~~glD~~~~---~~~~~~l~~~~ 160 (198)
T cd03276 104 VRDVKTLSGGERSFSTVC---LLLSLWEVMESPF---RCLDEFDVFMDMVNR---KISTDLLVKEA 160 (198)
T ss_pred CCcccccChhHHHHHHHH---HHHHHhcccCCCE---EEecCcccccCHHHH---HHHHHHHHHHH
Confidence 456677888888877776 3332 467777 789999999999984 45555555543
No 398
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=97.68 E-value=3.2e-05 Score=85.39 Aligned_cols=50 Identities=10% Similarity=0.034 Sum_probs=39.6
Q ss_pred cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCc
Q 007480 49 GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM 111 (602)
Q Consensus 49 al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~ 111 (602)
-..+|+++++.+ ++++|+||+||||||||+ .|.. .+++.| |++.|.++..
T Consensus 18 l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~-----------~~~sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 18 LERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKR-----------KFSEGYEFFLDATHSFS 71 (504)
T ss_pred HHHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCC-----------CCCCCCEEEECCEECCC
Confidence 346789999888 999999999999999999 5552 344444 9999987753
No 399
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.58 E-value=0.0002 Score=78.11 Aligned_cols=95 Identities=13% Similarity=0.099 Sum_probs=51.1
Q ss_pred CCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeecc-HHHH
Q 007480 225 DKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNG-NEFV 303 (602)
Q Consensus 225 ~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG-~~l~ 303 (602)
++.+.++|++.-|..+++ -|. .++.. . -|.|||.+-||.+.+-. ..+.|...+.........+.+ -.+.
T Consensus 450 e~~v~~LSGGELQRvaIa---a~L--~reAD-l-YllDEPSA~LDvEqR~~---vakvIRR~~e~~~kta~vVdHDi~~~ 519 (591)
T COG1245 450 ERPVDELSGGELQRVAIA---AAL--SREAD-L-YLLDEPSAYLDVEQRII---VAKVIRRFIENNEKTALVVDHDIYMI 519 (591)
T ss_pred hcccccCCchhHHHHHHH---HHh--ccccC-E-EEecCchhhccHHHHHH---HHHHHHHHHhhcCceEEEEecceehh
Confidence 456778899988888776 232 33321 0 35789999999887443 344444433333333345555 3455
Q ss_pred HHHHHHHHHHc-----CCCCCCCcchHHHHh
Q 007480 304 AFMEQILEALN-----KGEIPSTGSLVEVFN 329 (602)
Q Consensus 304 ~lv~~yv~aIN-----sG~vP~~~sl~e~~n 329 (602)
+|+.+.+-.+. .|....+.++.+.+|
T Consensus 520 dyvsDr~ivF~GePg~~g~a~~P~~mr~GMN 550 (591)
T COG1245 520 DYVSDRLIVFEGEPGKHGHASPPMSMREGMN 550 (591)
T ss_pred hhhhceEEEEecCCCccCcCCCCccHHHHHH
Confidence 55555444442 233334445544443
No 400
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.50 E-value=0.00041 Score=87.23 Aligned_cols=81 Identities=15% Similarity=0.089 Sum_probs=52.9
Q ss_pred HHHHHHHHHhCCCCC--CCCCchhhhhHHHHHHhhcCCCcEEE--ccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHh
Q 007480 209 QEMVHDALQRVPNDK--GDKNIDMVNQIRNSLAIMGDNSTAFS--LPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVA 284 (602)
Q Consensus 209 ~eyLe~aL~~~~~~~--~~~~i~~ln~~r~~i~~~f~~~~cf~--L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~ 284 (602)
.+.+ ++|+.++... .++.+.++|++++++.+++ .++. ...|.+ .+.|||+++||+..+ +.+.+.+.
T Consensus 787 ~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LA---raL~~~~~~P~L---LILDEPTsGLD~~~~---~~Ll~lL~ 856 (1809)
T PRK00635 787 HEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLA---YELLAPSKKPTL---YVLDEPTTGLHTHDI---KALIYVLQ 856 (1809)
T ss_pred HHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHH---HHHhhcCCCCCE---EEEeCCCCCCCHHHH---HHHHHHHH
Confidence 3444 3666665422 3577889999999999887 3433 146776 789999999999994 45666665
Q ss_pred hhcCCCccceEeeccH
Q 007480 285 SVTRPKIVQGKFLNGN 300 (602)
Q Consensus 285 ~~~~pK~l~g~~ltG~ 300 (602)
++.+ +...-..+++.
T Consensus 857 ~L~~-~G~TVIiIsHd 871 (1809)
T PRK00635 857 SLTH-QGHTVVIIEHN 871 (1809)
T ss_pred HHHh-cCCEEEEEeCC
Confidence 5532 22233455554
No 401
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.00032 Score=73.94 Aligned_cols=50 Identities=22% Similarity=0.348 Sum_probs=37.2
Q ss_pred CCcccEEeeCCCcceEEeccccccccccccccEEEEEEECCCCCCHHHHHHHHHcC
Q 007480 28 HQAFPIVEPDPGHTKLRLSREGLETIRRITNPIAAIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 28 ~~~iplv~~d~~~~~l~~~~eal~iL~~Is~~V~vVsIvG~~gsGKStLLn~L~g~ 83 (602)
.+++|+|.-++ .++..+.+.|.+- .++.|||++|+.|+||||||+.|++.
T Consensus 162 k~s~~li~d~g-----~~~d~a~~ll~~~-tdf~VIgvlG~QgsGKStllslLaan 211 (491)
T KOG4181|consen 162 KRSTPLIVDNG-----IFNDNARKLLHKT-TDFTVIGVLGGQGSGKSTLLSLLAAN 211 (491)
T ss_pred cCCcceeeccc-----chhhHHHHHhhcC-CCeeEEEeecCCCccHHHHHHHHhcc
Confidence 34566664332 2456667766655 67889999999999999999999986
No 402
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.42 E-value=0.00029 Score=62.83 Aligned_cols=58 Identities=24% Similarity=0.256 Sum_probs=37.1
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcceEEcCcccCccccCcceEEEeeccccccc
Q 007480 63 IAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 130 (602)
Q Consensus 63 VsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~~~ 130 (602)
|+|+|+.|+|||||+|.|+|. +...+++. ..+|........+. ....+.+.||+|+.+
T Consensus 2 V~iiG~~~~GKSTlin~l~~~---~~~~~~~~-~~~T~~~~~~~~~~------~~~~~~~vDtpG~~~ 59 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK---KLAKVSNI-PGTTRDPVYGQFEY------NNKKFILVDTPGIND 59 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS---TSSEESSS-TTSSSSEEEEEEEE------TTEEEEEEESSSCSS
T ss_pred EEEECCCCCCHHHHHHHHhcc---cccccccc-ccceeeeeeeeeee------ceeeEEEEeCCCCcc
Confidence 789999999999999999984 23334433 23444432211111 234557899999864
No 403
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=97.39 E-value=0.00019 Score=77.36 Aligned_cols=49 Identities=29% Similarity=0.443 Sum_probs=38.5
Q ss_pred ccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEE
Q 007480 52 TIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWV 104 (602)
Q Consensus 52 iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi 104 (602)
+|+++|+.+ ++++|+|+||+||||+|++|+|.. |..+.....|++| +-+
T Consensus 398 vlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~----~~~~ee~y~p~sg~v~v 450 (593)
T COG2401 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQ----KGRGEEKYRPDSGKVEV 450 (593)
T ss_pred eeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHh----hcccccccCCCCCceec
Confidence 567788777 999999999999999999999962 3344455678888 543
No 404
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.37 E-value=0.00033 Score=68.36 Aligned_cols=45 Identities=24% Similarity=0.229 Sum_probs=32.8
Q ss_pred ccccccccccEEEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcC
Q 007480 50 LETIRRITNPIAAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWG 106 (602)
Q Consensus 50 l~iL~~Is~~V~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~ 106 (602)
.+.|...-..-+.++|+||+|||||||++.|+|.. +++.| |.+.+
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i------------~~~~~~i~ied 60 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFI------------PPDERIITIED 60 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhc------------CCCCCEEEECC
Confidence 33443332233789999999999999999999983 67788 55543
No 405
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.36 E-value=0.0003 Score=84.14 Aligned_cols=79 Identities=10% Similarity=-0.008 Sum_probs=48.3
Q ss_pred CCCchhhhhHHHHHHhhcCCCcEEEcc--CccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHHH
Q 007480 225 DKNIDMVNQIRNSLAIMGDNSTAFSLP--QPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNEF 302 (602)
Q Consensus 225 ~~~i~~ln~~r~~i~~~f~~~~cf~L~--~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~l 302 (602)
++.+.++|+++++...++ ..+... .|.+ .+.|||+.+||+..+ ..+.+.+.++.+ +...-..+++..-
T Consensus 823 ~~~~~tLSgGe~QRl~LA---~aL~~~~~~p~l---lILDEPtsgLD~~~~---~~L~~~L~~l~~-~G~TVIvi~H~~~ 892 (924)
T TIGR00630 823 GQPATTLSGGEAQRIKLA---KELSKRSTGRTL---YILDEPTTGLHFDDI---KKLLEVLQRLVD-QGNTVVVIEHNLD 892 (924)
T ss_pred cCccccCCHHHHHHHHHH---HHHhhcCCCCCE---EEEECCCCCCCHHHH---HHHHHHHHHHHh-CCCEEEEEeCCHH
Confidence 567889999999998887 333322 4666 789999999999995 455555555432 2223345555332
Q ss_pred HHHHHHHHHHH
Q 007480 303 VAFMEQILEAL 313 (602)
Q Consensus 303 ~~lv~~yv~aI 313 (602)
.-...+++-.+
T Consensus 893 ~i~~aD~ii~L 903 (924)
T TIGR00630 893 VIKTADYIIDL 903 (924)
T ss_pred HHHhCCEEEEe
Confidence 11223444445
No 406
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.36 E-value=0.00027 Score=69.27 Aligned_cols=61 Identities=23% Similarity=0.155 Sum_probs=40.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcceEEcCcccCccccCcceEEEeecccccccc
Q 007480 62 AIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESI 131 (602)
Q Consensus 62 vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~~~~ 131 (602)
-|+++|.+|+|||||+|.|+|. ..|..+....+.|+..-.....+ ....+.+.||+|+.+.
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~---~~~~~~~~~~~~T~~~~~~~~~~------~~~~i~viDTPG~~d~ 62 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGR---EVFESKLSASSVTKTCQKESAVW------DGRRVNVIDTPGLFDT 62 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCC---CccccccCCCCcccccceeeEEE------CCeEEEEEECcCCCCc
Confidence 3789999999999999999995 56766643333343321111001 2235778899999753
No 407
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.33 E-value=0.0011 Score=79.58 Aligned_cols=104 Identities=17% Similarity=0.068 Sum_probs=62.9
Q ss_pred HHHHhCCCC--CCCCCchhhhhHHHHHHhhcCCCcEEEccCc---cchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 007480 214 DALQRVPND--KGDKNIDMVNQIRNSLAIMGDNSTAFSLPQP---HLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTR 288 (602)
Q Consensus 214 ~aL~~~~~~--~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P---~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~ 288 (602)
+.|+.++.. ..++.+..+|++++++..++ ..+ +..| .+ .+.|||+.+||+.. +..|.+.+.++.+
T Consensus 812 ~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LA---raL-~~~p~~~~l---lILDEPtsGLD~~~---~~~L~~~L~~l~~ 881 (943)
T PRK00349 812 QTLVDVGLGYIKLGQPATTLSGGEAQRVKLA---KEL-SKRSTGKTL---YILDEPTTGLHFED---IRKLLEVLHRLVD 881 (943)
T ss_pred HHHHHCCCCcccccCCcccCCHHHHHHHHHH---HHH-hcCCCCCeE---EEEECCCCCCCHHH---HHHHHHHHHHHHh
Confidence 345555542 13567889999999999887 333 3455 44 68999999999998 4556666655532
Q ss_pred CCccceEeeccHHHHHHHHHHHHHH------cCCCCCCCcchHHHH
Q 007480 289 PKIVQGKFLNGNEFVAFMEQILEAL------NKGEIPSTGSLVEVF 328 (602)
Q Consensus 289 pK~l~g~~ltG~~l~~lv~~yv~aI------NsG~vP~~~sl~e~~ 328 (602)
+...-..+++..-.-...+++-.+ ++|.+-..++..+..
T Consensus 882 -~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 882 -KGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred -CCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 233334555533211234455555 466665556655543
No 408
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.31 E-value=0.00068 Score=67.65 Aligned_cols=61 Identities=28% Similarity=0.281 Sum_probs=37.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcceEEcCcccCccccCcceEEEeecccccccc
Q 007480 62 AIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESI 131 (602)
Q Consensus 62 vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~~~~ 131 (602)
-|.++|+.|||||++.|.|+|. +.|..+++..++|+..-..... -....+.+.||+|+.+.
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~---~~f~~~~~~~~~t~~~~~~~~~------~~g~~v~VIDTPGl~d~ 62 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGK---EVFKSGSSAKSVTQECQKYSGE------VDGRQVTVIDTPGLFDS 62 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS---S-SS--TTTSS--SS-EEEEEE------ETTEEEEEEE--SSEET
T ss_pred EEEEECCCCCCHHHHHHHHhcc---cceeeccccCCcccccceeeee------ecceEEEEEeCCCCCCC
Confidence 3679999999999999999995 6788887666667653221111 12355678899999764
No 409
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.27 E-value=0.0017 Score=71.61 Aligned_cols=213 Identities=13% Similarity=0.211 Sum_probs=135.0
Q ss_pred ccEEeeCCCcceEEeccc-cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEc
Q 007480 31 FPIVEPDPGHTKLRLSRE-GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVW 105 (602)
Q Consensus 31 iplv~~d~~~~~l~~~~e-al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~ 105 (602)
-+++.+++ +.+.++ ....++++|+.| +|++|+|-.|-|-|-|+..|+|+ .++.+| |.+.
T Consensus 255 ~~vL~V~~----L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGl------------r~~~~G~I~l~ 318 (501)
T COG3845 255 EVVLEVED----LSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGL------------RKPASGRILLN 318 (501)
T ss_pred CeEEEEee----eEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCC------------CccCCceEEEC
Confidence 34666664 444443 367899999999 99999999999999999999998 356669 9999
Q ss_pred Cccc-Cc----cccCcceEEEeeccccccccCCCCchhHHHHHHHhhhhhhhhcccchhhhHHHHHHHHHHHhhhhhhhc
Q 007480 106 GNPV-EM----EIDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYG 180 (602)
Q Consensus 106 ~~~~-~~----~~~~~~~~vvl~DteG~~~~~~~tv~d~~ifaLa~LLSS~~IyN~~~~i~e~~l~~L~~~~~L~~~i~~ 180 (602)
|+++ .. ......++++.-|.-+.+.+...++.||.++.-..
T Consensus 319 G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~---------------------------------- 364 (501)
T COG3845 319 GKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHD---------------------------------- 364 (501)
T ss_pred CEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhcc----------------------------------
Confidence 9986 21 11345789999998888878888899998763311
Q ss_pred ccCCcccccCcccchhhhhhccCCcccHHHHHHHHHHhCCC--CCCCCCchhhhhHHHHHHhhcCCCcEEEccCccchhc
Q 007480 181 RVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPN--DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRT 258 (602)
Q Consensus 181 ~~~~e~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~--~~~~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~ 258 (602)
. .|+ .-|- |.+-.....+.++.++...- .+....+..+|++.+|..-.+.... ..|.+
T Consensus 365 -----~---~~~-~~~g----~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~----~~p~l--- 424 (501)
T COG3845 365 -----K---KPF-SRGG----FLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELA----RRPDL--- 424 (501)
T ss_pred -----c---ccc-cccc----ccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhc----cCCCE---
Confidence 0 011 0110 11122344445555554332 2224557788888777655552211 45665
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHHHHHH--HHHHHHHHcCCCC
Q 007480 259 KLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNEFVAF--MEQILEALNKGEI 318 (602)
Q Consensus 259 ~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~l~~l--v~~yv~aINsG~v 318 (602)
.+...|+.+||-.-. +.+.+.+.+..+. =.+..+-...+-++ +.+.+..|.+|.+
T Consensus 425 LI~~qPTrGLDvgA~---~~I~~~l~e~r~~--G~AVLLiS~dLDEil~lsDrIaVi~~Gri 481 (501)
T COG3845 425 LIAAQPTRGLDVGAI---EFIHERLLELRDA--GKAVLLISEDLDEILELSDRIAVIYEGRI 481 (501)
T ss_pred EEEcCCCccccHHHH---HHHHHHHHHHHhc--CCEEEEEehhHHHHHHhhheeeeeeCCce
Confidence 666778889998873 4455555544321 11345555555544 5667777888876
No 410
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.23 E-value=0.00011 Score=70.49 Aligned_cols=35 Identities=31% Similarity=0.514 Sum_probs=26.4
Q ss_pred ccccccccccccEEEEEEECCCCCCHHHHHHHHHcC
Q 007480 48 EGLETIRRITNPIAAIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 48 eal~iL~~Is~~V~vVsIvG~~gsGKStLLn~L~g~ 83 (602)
+.++.|...=.+ .+++++|++|+|||||+|.|.+.
T Consensus 24 ~g~~~l~~~l~~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC-CEEEEECCCCCCHHHHHHHHHhh
Confidence 444444433222 68899999999999999999986
No 411
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.18 E-value=0.0029 Score=62.66 Aligned_cols=57 Identities=19% Similarity=0.182 Sum_probs=35.4
Q ss_pred EEEEECCCCCCHHHHHH-HHHcCCCCCCCcccccccCCCcceEEcCcccCccccCcceEEEeeccccc
Q 007480 62 AIAVIGPYRSGKSFLLN-QLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 128 (602)
Q Consensus 62 vVsIvG~~gsGKStLLn-~L~g~~~~~gF~vg~t~~~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~ 128 (602)
-|+++|++|+|||||++ .+.|. |. ....+|.|+-+....+. .++..+.+-+.|+.|.
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~-----~~---~~~~~t~~~~~~~~~~~--~~~~~i~i~~~Dt~g~ 68 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGE-----FE---KKYIPTLGVEVHPLKFY--TNCGPICFNVWDTAGQ 68 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCC-----CC---CCCCCccceEEEEEEEE--ECCeEEEEEEEECCCc
Confidence 57999999999999996 55553 21 11245666443332221 1245577778888775
No 412
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.16 E-value=0.00099 Score=65.73 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q 007480 61 AAIAVIGPYRSGKSFLLNQLL 81 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~ 81 (602)
++++|.||||+||||||+.|.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 489999999999999999987
No 413
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.14 E-value=0.00027 Score=70.09 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=27.8
Q ss_pred ccccccccE-EEEEEECCCCCCHHHHHHHHHcC
Q 007480 52 TIRRITNPI-AAIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 52 iL~~Is~~V-~vVsIvG~~gsGKStLLn~L~g~ 83 (602)
++++++++. ++++|+||||+||||||+.|+|.
T Consensus 16 v~n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 16 VANDIDMEKKNGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred ecceEEEcCCcEEEEECCCCCChHHHHHHHHHH
Confidence 567776655 79999999999999999999885
No 414
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.12 E-value=0.00048 Score=66.16 Aligned_cols=24 Identities=38% Similarity=0.493 Sum_probs=21.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSLS 84 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~~ 84 (602)
.+++|+||+|||||||++.|++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 478999999999999999999863
No 415
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.12 E-value=0.00042 Score=68.07 Aligned_cols=25 Identities=36% Similarity=0.432 Sum_probs=22.7
Q ss_pred EEEEEEECCCCCCHHHHHHHHHcCC
Q 007480 60 IAAIAVIGPYRSGKSFLLNQLLSLS 84 (602)
Q Consensus 60 V~vVsIvG~~gsGKStLLn~L~g~~ 84 (602)
-.+++|+||+|||||||++.|++..
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999999974
No 416
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.02 E-value=0.003 Score=76.68 Aligned_cols=87 Identities=22% Similarity=0.243 Sum_probs=63.3
Q ss_pred ccccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEee
Q 007480 48 EGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYL 123 (602)
Q Consensus 48 eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~ 123 (602)
...++|++++.-+ +.+-+.||.||||||||+.|+|.. ++|. ...| |.++|.+++....+..+++.-+
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~--~~~~-------~~~~~isy~G~~~~e~~~~~~~aY~~e 196 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKL--DNFL-------KSSGEITYNGHDLKEFVPKKTVAYNSE 196 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCC--cccc-------cCCCceeECCCcccccccCceEEeccc
Confidence 3456888888644 999999999999999999999963 2222 2234 9999988764323455666654
Q ss_pred ccccccccCCCCchhHHHHHHHh
Q 007480 124 DTEGFESIGKSNVYDDRIFALAT 146 (602)
Q Consensus 124 DteG~~~~~~~tv~d~~ifaLa~ 146 (602)
+. -.++.+||++.+-|+.+.
T Consensus 197 ~D---vH~p~lTVreTldFa~rc 216 (1391)
T KOG0065|consen 197 QD---VHFPELTVRETLDFAARC 216 (1391)
T ss_pred cc---cccceeEEeehhhHHHhc
Confidence 43 245688999999999876
No 417
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.97 E-value=0.0015 Score=65.10 Aligned_cols=51 Identities=14% Similarity=0.298 Sum_probs=38.9
Q ss_pred EEeeCCCcceEEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcC
Q 007480 33 IVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 33 lv~~d~~~~~l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~ 83 (602)
++.+.+.+..+.-.++-.++.++++..+ ++-|+||.+|||||-..+.|.|.
T Consensus 3 LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v 56 (330)
T COG4170 3 LLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGV 56 (330)
T ss_pred cccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcc
Confidence 3333333344444556677888888776 99999999999999999999997
No 418
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.96 E-value=0.00044 Score=71.84 Aligned_cols=39 Identities=23% Similarity=0.346 Sum_probs=34.7
Q ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccC
Q 007480 60 IAAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVE 110 (602)
Q Consensus 60 V~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~ 110 (602)
..-++|+||+|||||||++.|+|. .+++.| |++.+.++.
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~------------~~~~~G~i~~~g~~v~ 150 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARI------------LSTGISQLGLRGKKVG 150 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCc------------cCCCCceEEECCEEee
Confidence 467899999999999999999998 478899 999998774
No 419
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=96.88 E-value=0.0012 Score=65.02 Aligned_cols=21 Identities=43% Similarity=0.558 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 007480 63 IAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 63 VsIvG~~gsGKStLLn~L~g~ 83 (602)
++|+|++|+|||||+|.|+|.
T Consensus 4 I~i~G~~g~GKSSLin~L~g~ 24 (197)
T cd04104 4 IAVTGESGAGKSSFINALRGV 24 (197)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 689999999999999999996
No 420
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.88 E-value=0.0015 Score=68.36 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHcC
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~ 83 (602)
.+++++|++|+|||||+|.|+|.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~ 184 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPD 184 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhch
Confidence 68999999999999999999996
No 421
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.83 E-value=0.0015 Score=61.68 Aligned_cols=54 Identities=24% Similarity=0.350 Sum_probs=34.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeeccccc
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLDTEGF 128 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~DteG~ 128 (602)
..++++|++|+|||||+|.|.|. ....++++.. .|++ .++. . .-.+.+.||+|.
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~---~~~~~~~~~g-~T~~~~~~~-----~-----~~~~~liDtPGi 157 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSK---KVCKVAPIPG-ETKVWQYIT-----L-----MKRIYLIDCPGV 157 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcC---CceeeCCCCC-eeEeEEEEE-----c-----CCCEEEEECcCC
Confidence 35789999999999999999985 3344444322 2333 2221 1 123678899884
No 422
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=96.83 E-value=0.0054 Score=67.22 Aligned_cols=78 Identities=9% Similarity=0.133 Sum_probs=46.5
Q ss_pred CCCchhhhhHHHHHHhhcCCCcEEEccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCccceEeeccHH-HH
Q 007480 225 DKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNE-FV 303 (602)
Q Consensus 225 ~~~i~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~~pK~l~g~~ltG~~-l~ 303 (602)
++.+.++|++.-|..+++ .|.+ ..... -+.|||.+-||-. |+-...+.|.+++++ +.....+.+.. ..
T Consensus 208 ~r~v~~LSGGELQr~aIa---a~l~-rdADv---Y~FDEpsSyLDi~---qRl~~ar~Irel~~~-~k~ViVVEHDLavL 276 (591)
T COG1245 208 DRDVSELSGGELQRVAIA---AALL-RDADV---YFFDEPSSYLDIR---QRLNAARVIRELAED-GKYVIVVEHDLAVL 276 (591)
T ss_pred hhhhhhcCchHHHHHHHH---HHHh-ccCCE---EEEcCCcccccHH---HHHHHHHHHHHHhcc-CCeEEEEechHHHH
Confidence 578899999998887775 2221 22222 3567777777754 366777888888775 22233444422 23
Q ss_pred HHHHHHHHHH
Q 007480 304 AFMEQILEAL 313 (602)
Q Consensus 304 ~lv~~yv~aI 313 (602)
+++.+++..+
T Consensus 277 D~lsD~vhI~ 286 (591)
T COG1245 277 DYLSDFVHIL 286 (591)
T ss_pred HHhhheeEEE
Confidence 4555555444
No 423
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.78 E-value=0.0012 Score=61.35 Aligned_cols=22 Identities=45% Similarity=0.587 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 007480 62 AIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 62 vVsIvG~~gsGKStLLn~L~g~ 83 (602)
+++|+||+|||||||++.|++.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999986
No 424
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=96.75 E-value=0.0022 Score=66.27 Aligned_cols=56 Identities=29% Similarity=0.395 Sum_probs=35.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCcccc---cccCCCcceEEcCcccCccccCcceEEEeeccccccc
Q 007480 62 AIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGH---MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 130 (602)
Q Consensus 62 vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~---t~~~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~~~ 130 (602)
.|+|+|+.++|||||+|.|.|.. .-.+++ |.....+|++.. ....+++.||.|+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~---~~~vs~~~~TTr~~i~~i~~~----------~~~qii~vDTPG~~~ 60 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQK---ISITSPKAQTTRNRISGIHTT----------GASQIIFIDTPGFHE 60 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc---EeecCCCCCcccCcEEEEEEc----------CCcEEEEEECcCCCC
Confidence 58999999999999999999851 111221 111222343322 123478899999853
No 425
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.74 E-value=0.058 Score=64.00 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=21.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHcC
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~ 83 (602)
.+++|.||||+||||||+.++|.
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 68999999999999999999885
No 426
>PRK00089 era GTPase Era; Reviewed
Probab=96.71 E-value=0.0026 Score=66.29 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=22.0
Q ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Q 007480 60 IAAIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 60 V~vVsIvG~~gsGKStLLn~L~g~ 83 (602)
-.+|+|+|+.|+|||||+|.|.|.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~ 28 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQ 28 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999985
No 427
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.68 E-value=0.0015 Score=52.85 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 007480 62 AIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 62 vVsIvG~~gsGKStLLn~L~g~ 83 (602)
+..|.|+|||||||||..+.-.
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999887643
No 428
>PRK12288 GTPase RsgA; Reviewed
Probab=96.67 E-value=0.0015 Score=70.40 Aligned_cols=63 Identities=22% Similarity=0.232 Sum_probs=37.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc--eEEcCcccCccccCcceEEEeecccccccc
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG--IWVWGNPVEMEIDGSRTSVFYLDTEGFESI 131 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG--Iwi~~~~~~~~~~~~~~~vvl~DteG~~~~ 131 (602)
.+++++|++|+|||||+|.|+|. ....+|.-+....+| ..-...-+... -+..+.||+|+..+
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~---~~~~t~~is~~~~rGrHTT~~~~l~~l~-----~~~~liDTPGir~~ 270 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPE---AEILVGDVSDNSGLGQHTTTAARLYHFP-----HGGDLIDSPGVREF 270 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccc---cceeeccccCcCCCCcCceeeEEEEEec-----CCCEEEECCCCCcc
Confidence 46789999999999999999985 344444433332333 11111101100 12357899998654
No 429
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.66 E-value=0.0017 Score=59.87 Aligned_cols=20 Identities=45% Similarity=0.534 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHc
Q 007480 63 IAVIGPYRSGKSFLLNQLLS 82 (602)
Q Consensus 63 VsIvG~~gsGKStLLn~L~g 82 (602)
|+++|++|+|||||+|.|.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 68999999999999999994
No 430
>PRK12289 GTPase RsgA; Reviewed
Probab=96.66 E-value=0.0018 Score=69.76 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHcC
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~ 83 (602)
.+++|+|++|+|||||+|.|.+.
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcCc
Confidence 46899999999999999999975
No 431
>COG1159 Era GTPase [General function prediction only]
Probab=96.65 E-value=0.0028 Score=66.04 Aligned_cols=57 Identities=26% Similarity=0.431 Sum_probs=38.2
Q ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccC----CCcceEEcCcccCccccCcceEEEeecccccc
Q 007480 59 PIAAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDT----KTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 129 (602)
Q Consensus 59 ~V~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~----~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~~ 129 (602)
....|||+|+.-+|||||+|.|.|.- -+.-+...+ .-+||... .+..++|.||+|+.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~K----isIvS~k~QTTR~~I~GI~t~----------~~~QiIfvDTPGih 65 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQK----ISIVSPKPQTTRNRIRGIVTT----------DNAQIIFVDTPGIH 65 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCc----eEeecCCcchhhhheeEEEEc----------CCceEEEEeCCCCC
Confidence 44789999999999999999999961 111111111 12344432 24568999999985
No 432
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=96.58 E-value=0.0035 Score=64.40 Aligned_cols=60 Identities=18% Similarity=0.169 Sum_probs=38.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcceEEcCcccCccccCcceEEEeeccccccc
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 130 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~~~ 130 (602)
-.|+++|+.|+|||||+|.|+|. ..+.++. ..+.|..+...... .....+.+.||.|+++
T Consensus 32 ~~IllvG~tGvGKSSliNaLlg~---~~~~v~~-~~~~T~~~~~~~~~------~~g~~i~vIDTPGl~~ 91 (249)
T cd01853 32 LTILVLGKTGVGKSSTINSIFGE---RKAATSA-FQSETLRVREVSGT------VDGFKLNIIDTPGLLE 91 (249)
T ss_pred eEEEEECCCCCcHHHHHHHHhCC---CCcccCC-CCCceEEEEEEEEE------ECCeEEEEEECCCcCc
Confidence 57789999999999999999995 3444432 12334442221111 1234577899999874
No 433
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.56 E-value=0.0036 Score=61.24 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=22.4
Q ss_pred cEEEEEEECCCCCCHHHHHHHHHcC
Q 007480 59 PIAAIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 59 ~V~vVsIvG~~gsGKStLLn~L~g~ 83 (602)
++..|+|+|++|+|||||+|.+.+.
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999999985
No 434
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.55 E-value=0.0018 Score=64.21 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=22.9
Q ss_pred EEEEEEECCCCCCHHHHHHHHHcCC
Q 007480 60 IAAIAVIGPYRSGKSFLLNQLLSLS 84 (602)
Q Consensus 60 V~vVsIvG~~gsGKStLLn~L~g~~ 84 (602)
-.+++|+|++|||||||++.|.+..
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4799999999999999999999973
No 435
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=96.53 E-value=0.003 Score=59.56 Aligned_cols=37 Identities=35% Similarity=0.409 Sum_probs=27.3
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEE
Q 007480 63 IAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWV 104 (602)
Q Consensus 63 VsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi 104 (602)
|+|+|+.++|||||+|.|+|. .-++.+. .++|.. +++
T Consensus 1 V~v~G~~ssGKSTliNaLlG~---~ilp~~~--~~~T~~~~~i 38 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGR---PILPSGV--GPCTAVPTEI 38 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTS---S-SSSSS--SSTTSSEEEE
T ss_pred CEEEcCCCCCHHHHHHHHHhc---ccCcccc--cccccceeEE
Confidence 689999999999999999995 3344333 366766 444
No 436
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.51 E-value=0.0048 Score=56.63 Aligned_cols=23 Identities=39% Similarity=0.548 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHcC
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~ 83 (602)
..++++|+.|+|||||+|.++|.
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999985
No 437
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.49 E-value=0.0033 Score=61.69 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=28.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCc
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTK 100 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~Tk 100 (602)
.++.|+||+|+|||||++.|....+.-.|.+.+|..++-.
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~ 44 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRP 44 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCC
Confidence 4789999999999999999987533334455555544433
No 438
>PRK00098 GTPase RsgA; Reviewed
Probab=96.49 E-value=0.0035 Score=66.03 Aligned_cols=23 Identities=35% Similarity=0.339 Sum_probs=21.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHcC
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~ 83 (602)
.+++++|++|+|||||+|.|+|.
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 58899999999999999999986
No 439
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.48 E-value=0.06 Score=58.91 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=31.1
Q ss_pred EEeccccccccccccccE---EEEEEECCCCCCHHHHHHHHHcC
Q 007480 43 LRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 43 l~~~~eal~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~ 83 (602)
|.++..+..++-+-++.| ..+++|||||-||||||+.|+..
T Consensus 270 F~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~R 313 (807)
T KOG0066|consen 270 FDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAAR 313 (807)
T ss_pred eeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhh
Confidence 455545555555556655 78999999999999999999864
No 440
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.46 E-value=0.0022 Score=62.54 Aligned_cols=23 Identities=39% Similarity=0.456 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHcC
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~ 83 (602)
.+++|+||+|||||||++.|++.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999986
No 441
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.45 E-value=0.0027 Score=65.04 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHcC
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~ 83 (602)
.+++++|++|+|||||+|.|.+.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhh
Confidence 58899999999999999999985
No 442
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.44 E-value=0.0024 Score=67.11 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=22.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSLS 84 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~~ 84 (602)
.+|||+|++|||||||++.|.++.
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 699999999999999999998873
No 443
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=96.44 E-value=0.0055 Score=57.42 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 007480 63 IAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 63 VsIvG~~gsGKStLLn~L~g~ 83 (602)
|+|+|++|+|||||+|.|.+.
T Consensus 3 v~ivG~~~~GKStl~~~l~~~ 23 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNA 23 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999975
No 444
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.42 E-value=0.0026 Score=62.33 Aligned_cols=40 Identities=30% Similarity=0.370 Sum_probs=31.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG 101 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG 101 (602)
.++.|.||+|+|||||++.|.... +-.|++++|+.+|-.|
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~g 44 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPG 44 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCC
Confidence 478899999999999999998763 4556677777666555
No 445
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.42 E-value=0.0042 Score=58.65 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 007480 62 AIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 62 vVsIvG~~gsGKStLLn~L~g~ 83 (602)
.++|+|++|+|||||++.|.|.
T Consensus 16 ~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 16 RILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred EEEEEccCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
No 446
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.41 E-value=0.0038 Score=62.03 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=26.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccC
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDT 97 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~ 97 (602)
.++.|+||+|||||||++.|......-+|.+.+|..+
T Consensus 14 ~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~ 50 (206)
T PRK14738 14 LLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRP 50 (206)
T ss_pred eEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCC
Confidence 6788999999999999999976422233444444433
No 447
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=96.38 E-value=0.005 Score=64.17 Aligned_cols=64 Identities=27% Similarity=0.284 Sum_probs=39.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCccccc------ccCCCcceEEcCcccCccccCcceEEEeeccccccc
Q 007480 62 AIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHM------RDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 130 (602)
Q Consensus 62 vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t------~~~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~~~ 130 (602)
.+.++|++|+|||||+|.|.+. .-+..... ..++|.++......+. .++..+.+.+.||.|+++
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~---~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~--~~g~~~~l~iiDTpGfgd 75 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNT---KLIPSDYPPDPAEEHIDKTVEIKSSKAEIE--ENGVKLKLTVIDTPGFGD 75 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcC---CCccccCCCCccccccCCceEEEEEEEEEE--ECCEEEEEEEEecCCccc
Confidence 4689999999999999999874 11221111 1123333332222221 234556788999999975
No 448
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.37 E-value=0.0021 Score=62.50 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=24.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCcc
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGV 91 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~~~~~gF~v 91 (602)
.+++|+|++|||||||++.|.+.....|+.+
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~~~g~~v 37 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALCARGIRP 37 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHhhcCCeE
Confidence 4899999999999999999998753334443
No 449
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.34 E-value=0.0035 Score=60.28 Aligned_cols=24 Identities=33% Similarity=0.402 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSLS 84 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~~ 84 (602)
.+++|+||+|||||||++.|++..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998863
No 450
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.33 E-value=0.0028 Score=56.61 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 007480 62 AIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 62 vVsIvG~~gsGKStLLn~L~g~ 83 (602)
+|+|.|++||||||+.+.|+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 451
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.32 E-value=0.0023 Score=62.66 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 007480 62 AIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 62 vVsIvG~~gsGKStLLn~L~g~ 83 (602)
+|+|+|++|||||||++.|.+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999986
No 452
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.32 E-value=0.0022 Score=64.57 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 007480 62 AIAVIGPYRSGKSFLLNQLLSLS 84 (602)
Q Consensus 62 vVsIvG~~gsGKStLLn~L~g~~ 84 (602)
+|||+|++|||||||++.|.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999873
No 453
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.29 E-value=0.0029 Score=63.81 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=23.6
Q ss_pred cEEEEEEECCCCCCHHHHHHHHHcCC
Q 007480 59 PIAAIAVIGPYRSGKSFLLNQLLSLS 84 (602)
Q Consensus 59 ~V~vVsIvG~~gsGKStLLn~L~g~~ 84 (602)
+-.+++|+|++|||||||++.|.+..
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999973
No 454
>PRK01889 GTPase RsgA; Reviewed
Probab=96.29 E-value=0.004 Score=67.28 Aligned_cols=34 Identities=29% Similarity=0.430 Sum_probs=29.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcC
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWG 106 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~ 106 (602)
++++++|++|+|||||+|.|+|. ..++.| |...+
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~------------~~~~~G~i~~~~ 230 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGE------------EVQKTGAVREDD 230 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHh------------cccceeeEEECC
Confidence 68999999999999999999997 356777 77654
No 455
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.29 E-value=0.0059 Score=67.63 Aligned_cols=44 Identities=30% Similarity=0.328 Sum_probs=33.8
Q ss_pred ccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcC
Q 007480 50 LETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWG 106 (602)
Q Consensus 50 l~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~ 106 (602)
..+++.+. ++ +.++|+|++|+||||||++|++. ..++.| |++-|
T Consensus 153 i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l------------~~pd~gvv~liG 200 (450)
T PRK06002 153 VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARA------------DAFDTVVIALVG 200 (450)
T ss_pred cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCeeeeeecc
Confidence 44454443 45 89999999999999999999997 367788 66543
No 456
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=96.21 E-value=0.0087 Score=55.84 Aligned_cols=60 Identities=22% Similarity=0.237 Sum_probs=38.6
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcceEEcCcccCccccCcceEEEeeccccc
Q 007480 63 IAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 128 (602)
Q Consensus 63 VsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~ 128 (602)
++++|+.|+|||+|++.+.+. ...|. ....+|.|+.+....+... .+..+.+.+.|+.|.
T Consensus 3 i~vvG~~~~GKtsl~~~l~~~--~~~~~---~~~~~t~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~ 62 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHSN--GAVFP---KNYLMTTGCDFVVKEVPVD-TDNTVELFIFDSAGQ 62 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC--CCCcC---ccCCCceEEEEEEEEEEeC-CCCEEEEEEEECCCH
Confidence 689999999999999999752 01221 2245677754433322211 245678888999874
No 457
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.19 E-value=0.0051 Score=60.77 Aligned_cols=38 Identities=29% Similarity=0.461 Sum_probs=28.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccC
Q 007480 62 AIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVE 110 (602)
Q Consensus 62 vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~ 110 (602)
++.|+||+||||||+++.|++.. .+...| |+....|+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~-----------~~~~~~~i~t~e~~~E 41 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI-----------NKNKTHHILTIEDPIE 41 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----------hhcCCcEEEEEcCCcc
Confidence 68899999999999999998863 223355 676666654
No 458
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.18 E-value=0.0035 Score=60.96 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHcC
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~ 83 (602)
++++|+|++|||||||++.|++.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 58899999999999999999997
No 459
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=96.17 E-value=0.0062 Score=60.65 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=27.7
Q ss_pred cccccccccE---EEEEEECCCCCCHHHHHHHHHcC
Q 007480 51 ETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 51 ~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~ 83 (602)
.++.++|..+ .---++|.||+||||||++|.|.
T Consensus 28 P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGK 63 (291)
T KOG2355|consen 28 PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGK 63 (291)
T ss_pred ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCc
Confidence 5677776655 56678999999999999999997
No 460
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=96.11 E-value=0.018 Score=57.67 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=32.7
Q ss_pred CchhhhhHHHHHHhhcCCCcEE---EccCccchhcccCCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 007480 227 NIDMVNQIRNSLAIMGDNSTAF---SLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVT 287 (602)
Q Consensus 227 ~i~~ln~~r~~i~~~f~~~~cf---~L~~P~~~~~~L~d~p~~~Ld~~F~e~~~~L~~~I~~~~ 287 (602)
.+.+++++++++...+ .++ .+..|.. .+.|||+..||+... ..+.+.+.+..
T Consensus 123 ~~~~LS~G~~q~~~i~---~~la~~~~~~p~l---lllDEP~~~LD~~~~---~~i~~~l~~~~ 177 (213)
T cd03277 123 DPHHQSGGERSVSTML---YLLSLQELTRCPF---RVVDEINQGMDPTNE---RKVFDMLVETA 177 (213)
T ss_pred chhhccccHHHHHHHH---HHHHHHhccCCCE---EEEecccccCCHHHH---HHHHHHHHHHh
Confidence 4556777777754332 111 1245665 789999999999994 45555565543
No 461
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.10 E-value=0.0067 Score=63.67 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHcC
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~ 83 (602)
.+.+++|+||.|||||+|.|.+-
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCch
Confidence 58889999999999999999974
No 462
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=96.10 E-value=0.011 Score=55.82 Aligned_cols=54 Identities=31% Similarity=0.369 Sum_probs=35.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEcCcccCccccCcceEEEeeccccc
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLDTEGF 128 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~~~~~~~~~~~~~~~vvl~DteG~ 128 (602)
..++++|.+++|||||+|.|.+. ..+.++... ..|.. .++. . ...+.+.||.|+
T Consensus 101 ~~~~~~G~~~~GKstlin~l~~~---~~~~~~~~~-~~t~~~~~~~---~-------~~~~~liDtPG~ 155 (155)
T cd01849 101 ITVGVIGYPNVGKSSVINALLNK---LKLKVGNVP-GTTTSQQEVK---L-------DNKIKLLDTPGI 155 (155)
T ss_pred cEEEEEccCCCCHHHHHHHHHcc---ccccccCCC-CcccceEEEE---e-------cCCEEEEECCCC
Confidence 56889999999999999999985 344444432 23333 3321 1 124677899885
No 463
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=96.08 E-value=0.0064 Score=63.60 Aligned_cols=65 Identities=23% Similarity=0.341 Sum_probs=35.5
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCccccccc----CCCcceEEcCcccCccccCcceEEEeeccccccc
Q 007480 63 IAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRD----TKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 130 (602)
Q Consensus 63 VsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~----~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~~~ 130 (602)
+-|+|.+|+|||||+|.|++.. .+....... +..+..-+.........++..+.+-+.||+|+++
T Consensus 7 ImVvG~sG~GKTTFIntL~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd 75 (281)
T PF00735_consen 7 IMVVGESGLGKTTFINTLFNSD---IISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGD 75 (281)
T ss_dssp EEEEECTTSSHHHHHHHHHTSS------------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSS
T ss_pred EEEECCCCCCHHHHHHHHHhcc---cccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccc
Confidence 5689999999999999999852 222211111 1112222222222222345667788899999985
No 464
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.07 E-value=0.018 Score=60.91 Aligned_cols=33 Identities=27% Similarity=0.271 Sum_probs=28.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcc-eEEc
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVW 105 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkG-Iwi~ 105 (602)
..+.|+|++|||||||++.|++. .++..| +.+.
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~------------~~~~~~iv~ie 178 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDE------------IPKDERIITIE 178 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHcc------------CCccccEEEEc
Confidence 68999999999999999999998 367778 5554
No 465
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=96.07 E-value=0.0096 Score=55.27 Aligned_cols=57 Identities=18% Similarity=0.272 Sum_probs=34.9
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcceEEcCcccCccccCcceEEEeeccccc
Q 007480 63 IAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 128 (602)
Q Consensus 63 VsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~ 128 (602)
++++|+.|+|||||+|.+.+. .|.. ...++.|.-+....+. ..+..+.+.+.|+.|.
T Consensus 3 i~liG~~~~GKSsli~~l~~~----~~~~---~~~~~~~~~~~~~~~~--~~~~~~~l~~~D~~G~ 59 (161)
T cd01861 3 LVFLGDQSVGKTSIITRFMYD----TFDN---QYQATIGIDFLSKTMY--LEDKTVRLQLWDTAGQ 59 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcC----CCCc---cCCCceeeeEEEEEEE--ECCEEEEEEEEECCCc
Confidence 789999999999999999874 2322 1234444322111111 1133456778899874
No 466
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.05 E-value=0.0043 Score=56.61 Aligned_cols=53 Identities=25% Similarity=0.277 Sum_probs=33.8
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcceEEcCcccCccccCcceEEEeeccccc
Q 007480 63 IAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 128 (602)
Q Consensus 63 VsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~ 128 (602)
|+|+|++|+|||||+|.|.+. -|.. ...+|.|+-... +. ...+.+.+.|+.|.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~----~~~~---~~~~t~~~~~~~--~~----~~~~~~~~~D~~g~ 54 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG----QFSE---DTIPTVGFNMRK--VT----KGNVTLKVWDLGGQ 54 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC----CCCc---CccCCCCcceEE--EE----ECCEEEEEEECCCC
Confidence 689999999999999999885 2321 124455632221 11 12356777888775
No 467
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.05 E-value=0.0044 Score=61.17 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=21.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHcC
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~ 83 (602)
++++|+||||+||||||+.|++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 79999999999999999999954
No 468
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=96.03 E-value=0.01 Score=54.05 Aligned_cols=57 Identities=28% Similarity=0.365 Sum_probs=34.7
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcceEEcCcccCccccCcceEEEeeccccc
Q 007480 63 IAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 128 (602)
Q Consensus 63 VsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~ 128 (602)
|+++|+.|+|||||+|.+.+.. |.-. ..+|.|.......+.. .+..+.+.+.|+.|.
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~----~~~~---~~~t~~~~~~~~~~~~--~~~~~~~~l~D~~g~ 59 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGK----FDEN---YKSTIGVDFKSKTIEI--DGKTVKLQIWDTAGQ 59 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCc----CCCc---cCCceeeeeEEEEEEE--CCEEEEEEEEecCCh
Confidence 7899999999999999998752 1111 2344453322221111 134466777888775
No 469
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.02 E-value=0.0051 Score=60.84 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=22.2
Q ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Q 007480 60 IAAIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 60 V~vVsIvG~~gsGKStLLn~L~g~ 83 (602)
-.+|+|+|++|||||||.+.|.+.
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999986
No 470
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.02 E-value=0.0093 Score=55.35 Aligned_cols=58 Identities=21% Similarity=0.230 Sum_probs=37.3
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcceEEcCcccCccccCcceEEEeecccccc
Q 007480 63 IAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 129 (602)
Q Consensus 63 VsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~~ 129 (602)
|+++|+.|+|||+|+|.+.+.. |.- ...+|.|+-+....+.. .+..+.+-+.|+.|..
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~----~~~---~~~~t~~~~~~~~~~~~--~~~~~~l~i~Dt~G~~ 60 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR----FVS---KYLPTIGIDYGVKKVSV--RNKEVRVNFFDLSGHP 60 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC----CCC---CCCCccceeEEEEEEEE--CCeEEEEEEEECCccH
Confidence 6899999999999999998752 221 13455664333222221 2455677788998853
No 471
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=95.95 E-value=0.013 Score=62.86 Aligned_cols=69 Identities=25% Similarity=0.360 Sum_probs=41.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCcccccc-cCCCcceEEcCcccCccccCcceEEEeeccccccc
Q 007480 62 AIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMR-DTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 130 (602)
Q Consensus 62 vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~-~~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~~~ 130 (602)
.|-++|++|+||||++|.|++..-.+.+..-+-. .+..+++-+-........++-.+.+-+.||+||++
T Consensus 25 ~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD 94 (373)
T COG5019 25 TIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGD 94 (373)
T ss_pred EEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccc
Confidence 4578999999999999999986322222110000 01123332222222222346778888999999986
No 472
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.94 E-value=0.0087 Score=66.99 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=21.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHcC
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~ 83 (602)
.|++++||||+||||++..|++.
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHH
Confidence 79999999999999999999986
No 473
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=95.94 E-value=0.013 Score=56.48 Aligned_cols=23 Identities=39% Similarity=0.437 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHcC
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~ 83 (602)
--|+|+|.+|+|||||+|.|.+.
T Consensus 25 ~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 25 PEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 46899999999999999999984
No 474
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.93 E-value=0.0068 Score=63.15 Aligned_cols=23 Identities=43% Similarity=0.481 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 007480 62 AIAVIGPYRSGKSFLLNQLLSLS 84 (602)
Q Consensus 62 vVsIvG~~gsGKStLLn~L~g~~ 84 (602)
++||+|++|||||||++.|.+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhh
Confidence 58999999999999999999973
No 475
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.93 E-value=0.0038 Score=59.49 Aligned_cols=31 Identities=29% Similarity=0.606 Sum_probs=25.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCccc
Q 007480 62 AIAVIGPYRSGKSFLLNQLLSLSCDEGFGVG 92 (602)
Q Consensus 62 vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg 92 (602)
|++|+|++|||||||++.|.......|++++
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~ 31 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVA 31 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 5899999999999999999987555566664
No 476
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=95.92 E-value=0.013 Score=52.73 Aligned_cols=59 Identities=32% Similarity=0.316 Sum_probs=35.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcceEEcCcccCccccCcceEEEeecccccc
Q 007480 62 AIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 129 (602)
Q Consensus 62 vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~~ 129 (602)
-|+++|+.|+|||||+|.+.+. . |.... .++.|.-.+...+. ..+....+.+.|+.|..
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~---~-~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~D~~G~~ 61 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGN---K-FITEY---KPGTTRNYVTTVIE--EDGKTYKFNLLDTAGQE 61 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCC---C-CcCcC---CCCceeeeeEEEEE--ECCEEEEEEEEECCCcc
Confidence 4789999999999999999985 2 33322 22333222221111 11223567788998853
No 477
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.89 E-value=0.0086 Score=60.13 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=25.7
Q ss_pred ccccccccE--EEEEEECCCCCCHHHHHHHHHcC
Q 007480 52 TIRRITNPI--AAIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 52 iL~~Is~~V--~vVsIvG~~gsGKStLLn~L~g~ 83 (602)
+.++++... ++++|+||||+||||+|+.+++.
T Consensus 20 v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~~ 53 (216)
T cd03284 20 VPNDTELDPERQILLITGPNMAGKSTYLRQVALI 53 (216)
T ss_pred EeeeEEecCCceEEEEECCCCCChHHHHHHHHHH
Confidence 345555444 79999999999999999999864
No 478
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.89 E-value=0.0069 Score=68.94 Aligned_cols=35 Identities=20% Similarity=0.438 Sum_probs=26.9
Q ss_pred cccccccccccEEEEEEECCCCCCHHHHHHHHHcC
Q 007480 49 GLETIRRITNPIAAIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 49 al~iL~~Is~~V~vVsIvG~~gsGKStLLn~L~g~ 83 (602)
+.+.+..-+....+|+|.||+|||||||++.|++.
T Consensus 54 a~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 54 ACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred HHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 33444332334579999999999999999999986
No 479
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=95.89 E-value=0.014 Score=56.17 Aligned_cols=31 Identities=26% Similarity=0.233 Sum_probs=23.6
Q ss_pred cccccccE--EEEEEECCCCCCHHHHHHHHHcC
Q 007480 53 IRRITNPI--AAIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 53 L~~Is~~V--~vVsIvG~~gsGKStLLn~L~g~ 83 (602)
|++++... ..|+|+|++|+|||||++.+.+.
T Consensus 10 ~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 10 LSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred HHHhhcccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44444322 34599999999999999999874
No 480
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=95.88 E-value=0.013 Score=55.41 Aligned_cols=58 Identities=29% Similarity=0.308 Sum_probs=36.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcceEEcCcccCccccCcceEEEeeccccc
Q 007480 62 AIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 128 (602)
Q Consensus 62 vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~ 128 (602)
-++|+|+.|+|||+|++.+.+. .|.. ..++|.|.-.....+. ..+..+.+.+.|+.|.
T Consensus 6 ki~vvG~~~vGKSsLl~~l~~~----~~~~---~~~~t~~~~~~~~~~~--~~~~~~~~~i~Dt~G~ 63 (168)
T cd01866 6 KYIIIGDTGVGKSCLLLQFTDK----RFQP---VHDLTIGVEFGARMIT--IDGKQIKLQIWDTAGQ 63 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHcC----CCCC---CCCCccceeEEEEEEE--ECCEEEEEEEEECCCc
Confidence 5789999999999999999874 2221 1245566433222221 1234566778898774
No 481
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=95.87 E-value=0.011 Score=56.66 Aligned_cols=60 Identities=30% Similarity=0.387 Sum_probs=34.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCccccc---ccCCCcceEEcCcccCccccCcceEEEeeccccccccCCCC
Q 007480 62 AIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHM---RDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSN 135 (602)
Q Consensus 62 vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t---~~~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~~~~~~~t 135 (602)
.|+++|...+|||||+|.|.|.. ..+|+. ...+..|.+-. ....+.+.|++|..+....+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~----~~v~n~pG~Tv~~~~g~~~~----------~~~~~~lvDlPG~ysl~~~s 64 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK----QKVGNWPGTTVEKKEGIFKL----------GDQQVELVDLPGIYSLSSKS 64 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS----EEEEESTTSSSEEEEEEEEE----------TTEEEEEEE----SSSSSSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC----ceecCCCCCCeeeeeEEEEe----------cCceEEEEECCCcccCCCCC
Confidence 47999999999999999999962 333321 11223442211 12467889999976653333
No 482
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=95.87 E-value=0.012 Score=54.57 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 007480 62 AIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 62 vVsIvG~~gsGKStLLn~L~g~ 83 (602)
+++|+|..++|||||+|.|.|.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~ 23 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGI 23 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCc
Confidence 6899999999999999999874
No 483
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.85 E-value=0.0058 Score=59.95 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 007480 62 AIAVIGPYRSGKSFLLNQLLSLS 84 (602)
Q Consensus 62 vVsIvG~~gsGKStLLn~L~g~~ 84 (602)
||||.|++|||||||.+.|...+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L 23 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL 23 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999998764
No 484
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=95.84 E-value=0.015 Score=54.45 Aligned_cols=58 Identities=28% Similarity=0.373 Sum_probs=36.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcceEEcCcccCccccCcceEEEeeccccc
Q 007480 62 AIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 128 (602)
Q Consensus 62 vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~ 128 (602)
-|+++|+.|+|||||++.+.+. .|... ..+|.|.-+....+.. .+..+.+-+.|+.|.
T Consensus 5 ki~vvG~~~~GKSsli~~l~~~----~~~~~---~~~t~~~~~~~~~~~~--~~~~~~~~l~D~~g~ 62 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFTRN----EFNLD---SKSTIGVEFATRSIQI--DGKTIKAQIWDTAGQ 62 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcC----CCCCC---CCCccceEEEEEEEEE--CCEEEEEEEEeCCCh
Confidence 4789999999999999999874 23221 2355564333222221 233456677888774
No 485
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=95.83 E-value=0.019 Score=53.77 Aligned_cols=57 Identities=25% Similarity=0.183 Sum_probs=36.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcceEEcCcccCccccCcceEEEeecccccc
Q 007480 62 AIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 129 (602)
Q Consensus 62 vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~~ 129 (602)
.|+++|..|+|||||+|.|.+.. |.+++. ...|.++...... ...+.+.+.||.|..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~----~~~~~~-~~~t~~~~~~~~~------~~~~~~~i~Dt~G~~ 58 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAK----PEVAPY-PFTTKSLFVGHFD------YKYLRWQVIDTPGLL 58 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCC----CccCCC-CCcccceeEEEEc------cCceEEEEEECCCcC
Confidence 57899999999999999999852 322211 1123443332211 134678889999974
No 486
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.79 E-value=0.0042 Score=65.42 Aligned_cols=43 Identities=26% Similarity=0.264 Sum_probs=32.6
Q ss_pred cccccccccccE---EEEEEECCCCCCHHHHHHHHHcCCCCCCCcc
Q 007480 49 GLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGV 91 (602)
Q Consensus 49 al~iL~~Is~~V---~vVsIvG~~gsGKStLLn~L~g~~~~~gF~v 91 (602)
+..+|++++... .+++|+|++|+|||||++.+.+.....|+.+
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v 65 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKV 65 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 455677776543 8999999999999999999998643344444
No 487
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.79 E-value=0.013 Score=54.83 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.7
Q ss_pred EEEEEEECCCCCCHHHHHHHHHc
Q 007480 60 IAAIAVIGPYRSGKSFLLNQLLS 82 (602)
Q Consensus 60 V~vVsIvG~~gsGKStLLn~L~g 82 (602)
...++++|++|+|||||++.+.+
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~ 29 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQ 29 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999999985
No 488
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=95.75 E-value=0.017 Score=53.63 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=36.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcceEEcCcccCccccCcceEEEeeccccc
Q 007480 62 AIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 128 (602)
Q Consensus 62 vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~ 128 (602)
-|+++|+.|+|||+|++.+.+- .|. ....+|-|..+....+.....+..+.+.+.|+.|.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~----~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 61 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKG----IFT---KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcC----CCC---CCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch
Confidence 3789999999999999999863 232 11234555332211221111134567888899875
No 489
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=95.75 E-value=0.016 Score=54.52 Aligned_cols=59 Identities=25% Similarity=0.207 Sum_probs=37.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcceEEcCcccCccccCcceEEEeecccccc
Q 007480 62 AIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 129 (602)
Q Consensus 62 vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~~ 129 (602)
-++++|+.|+|||||++.+.+. .|. ....+|.|+-+....+. .++..+.+.+.|+.|..
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~----~~~---~~~~~t~~~~~~~~~~~--~~~~~~~~~l~Dt~g~~ 61 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADD----SFT---SAFVSTVGIDFKVKTVF--RNDKRVKLQIWDTAGQE 61 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcC----CCC---CCCCCceeeEEEEEEEE--ECCEEEEEEEEECCChH
Confidence 3789999999999999999874 232 11245666433322221 12345677788998753
No 490
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=95.72 E-value=0.015 Score=54.39 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 007480 63 IAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 63 VsIvG~~gsGKStLLn~L~g~ 83 (602)
|+++|+.|+|||||+|.|.+.
T Consensus 2 i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhh
Confidence 689999999999999999874
No 491
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=95.71 E-value=0.017 Score=55.47 Aligned_cols=58 Identities=22% Similarity=0.210 Sum_probs=35.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcceEEcCcccCccccCcceEEEeeccccccc
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 130 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~~~ 130 (602)
..|+|+|+.|+|||||+|.|.+.. ....++++ ..+|..+-++..+ . .+.+.|+.|++.
T Consensus 19 ~~i~ivG~~~~GKStlin~l~~~~--~~~~~~~~-~~~t~~~~~~~~~-------~--~~~liDtpG~~~ 76 (179)
T TIGR03598 19 PEIAFAGRSNVGKSSLINALTNRK--KLARTSKT-PGRTQLINFFEVN-------D--GFRLVDLPGYGY 76 (179)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC--CcccccCC-CCcceEEEEEEeC-------C--cEEEEeCCCCcc
Confidence 467999999999999999999841 11122222 1234443222110 1 477889999753
No 492
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=95.71 E-value=0.014 Score=59.27 Aligned_cols=22 Identities=36% Similarity=0.467 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 007480 62 AIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 62 vVsIvG~~gsGKStLLn~L~g~ 83 (602)
.|+|+|++|+|||||+|.|.|.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~ 23 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNT 23 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999986
No 493
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=95.69 E-value=0.012 Score=53.87 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 007480 62 AIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 62 vVsIvG~~gsGKStLLn~L~g~ 83 (602)
.++++|+.|+|||||+|.+.+.
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~ 24 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGR 24 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4799999999999999999875
No 494
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=95.68 E-value=0.017 Score=53.70 Aligned_cols=58 Identities=28% Similarity=0.292 Sum_probs=35.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcceEEcCcccCccccCcceEEEeeccccc
Q 007480 62 AIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 128 (602)
Q Consensus 62 vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~ 128 (602)
-++|+|+.|+|||||+|.+.+. -|.. ...+|.|.-.....+. ..+..+.+.+.|+.|.
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~----~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~l~D~~g~ 59 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDD----TFDP---DLAATIGVDFKVKTLT--VDGKKVKLAIWDTAGQ 59 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcC----CCCc---ccCCcccceEEEEEEE--ECCEEEEEEEEECCCc
Confidence 3789999999999999999874 2221 1344555222111111 1134466788898875
No 495
>PRK15494 era GTPase Era; Provisional
Probab=95.66 E-value=0.02 Score=61.41 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 007480 62 AIAVIGPYRSGKSFLLNQLLSL 83 (602)
Q Consensus 62 vVsIvG~~gsGKStLLn~L~g~ 83 (602)
.|+|+|..++|||||+|.|.|.
T Consensus 54 kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 7899999999999999999984
No 496
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=95.66 E-value=0.017 Score=53.77 Aligned_cols=57 Identities=26% Similarity=0.397 Sum_probs=35.0
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcceEEcCcccCccccCcceEEEeeccccc
Q 007480 63 IAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 128 (602)
Q Consensus 63 VsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~ 128 (602)
++|+|+.|+|||||++.+.+. .|... .++|-|+.+....+. .++....+.+.|+.|.
T Consensus 3 i~v~G~~~vGKTsli~~l~~~----~~~~~---~~~~~~~~~~~~~~~--~~~~~~~l~l~D~~G~ 59 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVEN----KFKED---SQHTIGVEFGSKIIR--VGGKRVKLQIWDTAGQ 59 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC----CCCCC---CCCceeeeEEEEEEE--ECCEEEEEEEEECcch
Confidence 689999999999999999864 22211 234444322222221 1234466778888775
No 497
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.66 E-value=0.018 Score=53.98 Aligned_cols=58 Identities=29% Similarity=0.386 Sum_probs=35.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcceEEcCcccCccccCcceEEEeeccccc
Q 007480 62 AIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 128 (602)
Q Consensus 62 vVsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~ 128 (602)
-|+|+|+.|+|||||++.+.+- .|. ....+|.|+-.....+. ..+..+.+.+.|+.|.
T Consensus 5 kv~vvG~~~~GKTsli~~l~~~----~~~---~~~~~t~~~~~~~~~~~--~~~~~~~l~i~D~~G~ 62 (165)
T cd01864 5 KIILIGDSNVGKTCVVQRFKSG----TFS---ERQGNTIGVDFTMKTLE--IEGKRVKLQIWDTAGQ 62 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhhC----CCc---ccCCCccceEEEEEEEE--ECCEEEEEEEEECCCh
Confidence 4789999999999999998752 121 11234555322111111 1233456778899885
No 498
>PLN02796 D-glycerate 3-kinase
Probab=95.64 E-value=0.0087 Score=64.18 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=22.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Q 007480 61 AAIAVIGPYRSGKSFLLNQLLSLS 84 (602)
Q Consensus 61 ~vVsIvG~~gsGKStLLn~L~g~~ 84 (602)
-+|+|+|++|||||||++.|.+..
T Consensus 101 liIGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 101 LVIGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHh
Confidence 479999999999999999999874
No 499
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=95.63 E-value=0.019 Score=54.02 Aligned_cols=57 Identities=28% Similarity=0.344 Sum_probs=36.0
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcceEEcCcccCccccCcceEEEeeccccc
Q 007480 63 IAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 128 (602)
Q Consensus 63 VsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~ 128 (602)
++++|+.|+|||+|++.+.+. .|. ...++|.|.-+....+. ..+..+.+.+.|+.|.
T Consensus 5 i~iiG~~~vGKTsli~~~~~~----~~~---~~~~~t~~~~~~~~~~~--~~~~~~~l~i~Dt~G~ 61 (166)
T cd04122 5 YIIIGDMGVGKSCLLHQFTEK----KFM---ADCPHTIGVEFGTRIIE--VNGQKIKLQIWDTAGQ 61 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcC----CCC---CCCCcccceeEEEEEEE--ECCEEEEEEEEECCCc
Confidence 679999999999999999763 342 12345556333222221 1234566778898774
No 500
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=95.62 E-value=0.019 Score=53.21 Aligned_cols=57 Identities=32% Similarity=0.400 Sum_probs=33.7
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCcccccccCCCcceEEcCcccCccccCcceEEEeeccccc
Q 007480 63 IAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 128 (602)
Q Consensus 63 VsIvG~~gsGKStLLn~L~g~~~~~gF~vg~t~~~~TkGIwi~~~~~~~~~~~~~~~vvl~DteG~ 128 (602)
|+++|+.|+|||||++.+.+.. |. ....+|.|.-.....+. ..+..+.+.+.|+.|.
T Consensus 3 v~v~G~~~~GKTtli~~l~~~~----~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~l~D~~G~ 59 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDGK----FS---EQYKSTIGVDFKTKTIE--VDGKRVKLQIWDTAGQ 59 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC----CC---CCCCCceeeEEEEEEEE--ECCEEEEEEEEECCCh
Confidence 7899999999999999998742 21 11223444322211111 1234456667788774
Done!