Query 007480
Match_columns 602
No_of_seqs 324 out of 3271
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 18:51:22 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/007480.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2187-2191//hhsearch_pdb/007480hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ido_A Atlastin-1; GTPase, GTP 1.0 1 1 531.3 32.7 371 26-407 30-440 (457)
2 1f5n_A Interferon-induced guan 1.0 1 1 490.9 36.6 427 26-464 6-465 (592)
3 3q5d_A Atlastin-1; G protein, 1.0 1 1 478.3 27.9 374 24-408 28-441 (447)
4 3tui_C Methionine import ATP-b 1.0 1 1 155.0 9.4 221 31-329 22-253 (366)
5 3rlf_A Maltose/maltodextrin im 1.0 1 1 151.7 8.8 204 48-329 14-223 (381)
6 3fvq_A Fe(3+) IONS import ATP- 1.0 1 1 151.6 7.3 205 48-330 15-229 (359)
7 1g29_1 MALK, maltose transport 1.0 1 1 147.5 9.1 204 48-329 14-229 (372)
8 2yyz_A Sugar ABC transporter, 1.0 1 1 146.7 7.1 203 48-329 14-223 (359)
9 1z47_A CYSA, putative ABC-tran 1.0 1 1 146.6 10.0 204 48-329 26-235 (355)
10 2it1_A 362AA long hypothetical 1.0 1 1 146.4 8.3 203 48-329 14-223 (362)
No 1
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=1.00 E-value=1 Score=531.30 Aligned_cols=371 Identities=23% Similarity=0.369 Sum_probs=321.5
Q ss_pred CCCCCCCEEEECCCCCEEEECCCCCC-CCCC---CCCCEEEEEEECCCCCCHHHHHHHHHCCC--------------CCC
Q ss_conf 87885247830899524884543221-2223---23228999998799999889999997277--------------888
Q 007480 26 NFHQAFPIVEPDPGHTKLRLSREGLE-TIRR---ITNPIAAIAVIGPYRSGKSFLLNQLLSLS--------------CDE 87 (602)
Q Consensus 26 ~~~~~~plv~~~~~~~~l~v~~eal~-iL~~---I~~~V~VVsIiG~~gsGKStLLN~L~g~~--------------~~~ 87 (602)
..++|+|+|.+++. ++|.+|++|++ +|.. ++.||.||+|+|++|+|||||||.|+++. ..+
T Consensus 30 ~~~~pvqlV~~~~~-~~l~ln~eAl~~iL~~~~i~~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~ 108 (457)
T 4ido_A 30 KKAGPVQVLIVKDD-HSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLT 108 (457)
T ss_dssp -CCCEEEEEEECTT-SCEEECHHHHHHHHSSTTTTTSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCC
T ss_pred CCCCCEEEEEECCC-CCEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 78986048898799-98898899999998366557885699998778988646999999988640455432345566789
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCC-CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 9854445557886669809446754-457622798514655444588871247999998631133431561112377898
Q 007480 88 GFGVGHMRDTKTKGIWVWGNPVEME-IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADIS 166 (602)
Q Consensus 88 GF~vg~t~~~~TkGIwi~~~p~~~~-~~~~~~~ivllDteG~~~~~~~t~~d~~ifaLa~LLSS~lIyN~~~~i~e~~i~ 166 (602)
||+||+|+.+||+|||||+.|+... ..+.+++++++||||+++.+....+|.+||+|++||||++|||+++.|++++++
T Consensus 109 gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDTEG~~d~~~~~~~d~~ifaLa~LLSS~~IyN~~~~i~~~~L~ 188 (457)
T 4ido_A 109 GFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQ 188 (457)
T ss_dssp SSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEECCBTCTTCCHHHHHHHHHHHHHHCSEEEEEEESSCCHHHHH
T ss_pred CCEECCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHEEECCCCCCCHHHHH
T ss_conf 81258998986762899657413217999716899982267778665743158999999998324423665667888999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCC------C-CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999724566313467865556742102343203688------0-0099999999971999989998111336999997
Q 007480 167 RLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQ------G-KSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLA 239 (602)
Q Consensus 167 ~L~~v~~L~~~i~~~~~~~~~~f~P~~flw~vvRDf~~------g-~t~~eyLe~aL~~~~~~~~~~~~~~ln~~r~~i~ 239 (602)
+|++++++++.+... ....++| .|+|+| |||+. | .++++||+++|+..++. ..+.|.+|++|+
T Consensus 189 ~L~~~tel~~~i~~~---~~~~~Fp-~f~wlv-RDf~l~l~~~~g~~t~~eyLe~~L~~~~g~-----~~~~~~iR~~I~ 258 (457)
T 4ido_A 189 HLQLFTEYGRLAMEE---TFLKPFQ-SLIFLV-RDWSFPYEFSYGADGGAKFLEKRLKVSGNQ-----HEELQNVRKHIH 258 (457)
T ss_dssp HHHHHHHHHHHHSCC---CSSCSEE-EEEEEE-ETCCCTTTSCSBHHHHHHHHHHHHCCCTTS-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---CCCCCCC-CEEEEE-ECCCCCCCCCCCCCCHHHHHHHHHCCCCCC-----CHHHHHHHHHHH
T ss_conf 999999999987640---2446688-269998-127750002687777899999985137897-----778889999999
Q ss_pred HHCCCCCEEECCCCCCHHCCCC--CCCCCCCCHHHHHHHHHHHHHHHHH--CCCCCCCEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 3158874787169510010048--9998888988999999999999632--08873140850507899999999999729
Q 007480 240 IMGDNSTAFSLPQPHLLRTKLC--DMKDEELDPIYVKRREQLKKLVASV--TRPKIVQGKFLNGNEFVAFMEQILEALNK 315 (602)
Q Consensus 240 ~~f~~~~cf~L~~P~~~~~~L~--d~~~~~Ldp~F~e~~~~L~~~I~~~--~~pK~l~g~~itG~~l~~li~~yv~aIN~ 315 (602)
+|||+++||+||+|+.+..... +...++|+|+|++++++|+++|++. .++|+++|.++||++|+.+++.||++||+
T Consensus 259 ~~F~~~~Cf~lp~P~~~~~~~~~~~~~l~dL~peF~~ql~~l~~~I~~~~~l~~K~i~G~~vtg~~L~~lv~~Yv~ain~ 338 (457)
T 4ido_A 259 SCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQG 338 (457)
T ss_dssp HHEEEEEEEECCCCCHHHHHCTTCCCCGGGSCHHHHHHHHHHHHHHHSTTTCCCCEETTEECBHHHHHHHHHHHHHHHHS
T ss_pred HHCCCCCEEECCCCCHHHHHCHHHHCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHCC
T ss_conf 86777837983798610222434315965489999999999999983511026534199761599999999999999669
Q ss_pred CCCCCCCCHHH----HHHHHHHHHHHHHHHHHHHHC---CCC-CCHHHHHHHHHHHHHHHHHHHHHHC-CCC-HHHHHHH
Q ss_conf 99778742689----983999999999999997312---699-9966899999999999999998852-270-4689999
Q 007480 316 GEIPSTGSLVE----VFNKGILERCLKLYNERMAKV---RLP-LPEQSLQDAHERSKKEAMDVFDVQH-FGR-QHAKKSV 385 (602)
Q Consensus 316 G~iP~~~sl~e----~~n~~av~~a~~~Y~~~M~~~---~lP-~~~eeL~~~H~~~~~eAl~~F~k~~-fgd-~~~~~~~ 385 (602)
|++|+++++++ ++|.+|+++|+++|++.|++. .+| +++++|++.|+.|+++|+++|++.+ +|. +..++|+
T Consensus 339 g~vP~~esa~~a~ae~en~~Av~~A~~~Y~~~M~~~~~~~~P~~~~~eL~~~H~~~~~~Al~~F~~~~~~g~~d~~~~~~ 418 (457)
T 4ido_A 339 EELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSRRYL 418 (457)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHHHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 99999799999999999999999999999999999837889989999999999999999999998744456477789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999
Q 007480 386 MQLDEEIQEAYKNVIMANEYQS 407 (602)
Q Consensus 386 ~~L~~~i~~~~~~~~~~Ne~~S 407 (602)
++|+++|++++++|+++|+.+.
T Consensus 419 ~~L~~~l~~~~~~~~~~Ne~k~ 440 (457)
T 4ido_A 419 QQLESEIDELYIQYIKHNDSKN 440 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999999831646
No 2
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=1.00 E-value=1 Score=490.90 Aligned_cols=427 Identities=25% Similarity=0.450 Sum_probs=366.3
Q ss_pred CCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 87885247830899524884543221222323228999998799999889999997277888985444555788666980
Q 007480 26 NFHQAFPIVEPDPGHTKLRLSREGLETIRRITNPIAAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVW 105 (602)
Q Consensus 26 ~~~~~~plv~~~~~~~~l~v~~eal~iL~~I~~~V~VVsIiG~~gsGKStLLN~L~g~~~~~GF~vg~t~~~~TkGIwi~ 105 (602)
..+.|+++|..+ ++++.++++|+++|..++.++.+|+|+|+.++|||||+|.|+|. ..+|++++|..++|+|+|+|
T Consensus 6 ~m~~pv~li~~~--~~~l~~~~eal~~L~~i~~~~~~VaivG~pnvGKStLiN~L~g~--~~~~~~~~tt~~~T~gi~~~ 81 (592)
T 1f5n_A 6 HMTGPMCLIENT--NGRLMANPEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGK--KKGFSLGSTVQSHTKGIWMW 81 (592)
T ss_dssp -CCSCEEEEEEE--TTEEEECHHHHHHHHTCCSBEEEEEEEEBTTSSHHHHHHHHTTC--SSCSCCCCSSSCCCCSEEEE
T ss_pred CCCCCEEEEEEC--CCCEEECHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHCCC--CCCCCCCCCCCCCEEEEEEE
T ss_conf 888984899818--98188889999999833589857999899999799999867488--77666489878752479986
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 944675445762279851465544458887-1247999998631133431561112377898999997245663134678
Q 007480 106 GNPVEMEIDGSRTSVFYLDTEGFESIGKSN-VYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKG 184 (602)
Q Consensus 106 ~~p~~~~~~~~~~~ivllDteG~~~~~~~t-~~d~~ifaLa~LLSS~lIyN~~~~i~e~~i~~L~~v~~L~~~i~~~~~~ 184 (602)
+.|++. .....++++||+|+.+.+..+ ..+..+|+++.++||++|||..+.+++++++.+..+.++.+.+..+++.
T Consensus 82 ~~~~~~---~~~~~i~LiDTpGi~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e~~~~l~~k~~~ 158 (592)
T 1f5n_A 82 CVPHPK---KPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTELTHRIRSKSSP 158 (592)
T ss_dssp EEECSS---STTCEEEEEEECCBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHTHHHHCBSCCC-
T ss_pred ECCCCC---CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 135445---78864999628986765333046789999999995684999789875098999999999986321023576
Q ss_pred -----------CCCCCCCCCCHHHHHHCCC-----CC--CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf -----------6555674210234320368-----80--00999999999719999899981113369999973158874
Q 007480 185 -----------QDVAFEPAKLVWLIQRDFL-----QG--KSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNST 246 (602)
Q Consensus 185 -----------~~~~f~P~~flw~vvRDf~-----~g--~t~~eyLe~aL~~~~~~~~~~~~~~ln~~r~~i~~~f~~~~ 246 (602)
+...++| +|+|++ |||+ +| .|+++||+++|+..++. ++.+...|.+|++|..||++++
T Consensus 159 ~~~~~~~~~~~~~~~~fP-~~~wvv-RD~~l~~~~~g~~~t~~eyLe~~L~~~~~~--~~~~~~~n~~R~~I~~~F~~~~ 234 (592)
T 1f5n_A 159 DENENEVEDSADFVSFFP-DFVWTL-RDFSLDLEADGQPLTPDEYLTYSLKLKKGT--SQKDETFNLPRLCIRKFFPKKK 234 (592)
T ss_dssp ------CCGGGGHHHHCC-EEEEEE-ETCCCCCCCSSSCCCHHHHHHHHTCCCCCC--SHHHHHHHHHHHHHHHHCSCEE
T ss_pred CCCCCCCCCHHHHHCCCC-CEEEEE-ECCCCHHCCCCCCCCHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHCCCCC
T ss_conf 555443222344531388-449998-525301101787788899999998644588--7666753568999999678883
Q ss_pred EEECCCCCCHH--CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEECCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 78716951001--004899988889889999999999996320887314-085050789999999999972999778742
Q 007480 247 AFSLPQPHLLR--TKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQ-GKFLNGNEFVAFMEQILEALNKGEIPSTGS 323 (602)
Q Consensus 247 cf~L~~P~~~~--~~L~d~~~~~Ldp~F~e~~~~L~~~I~~~~~pK~l~-g~~itG~~l~~li~~yv~aIN~G~iP~~~s 323 (602)
||+||+|+.++ .+|.+.+.++|+|+|+++++.|+++|++..+||++. |.++||++|+.+++.||++||+|.+|++++
T Consensus 235 cf~lp~P~~~~~l~~L~~~~~~~L~peF~~~l~~l~~~i~~~~~~K~~~gg~~vtG~~L~~l~~~yv~ain~g~vP~~~s 314 (592)
T 1f5n_A 235 CFVFDRPVHRRKLAQLEKLQDEELDPEFVQQVADFCSYIFSNSKTKTLSGGIQVNGPRLESLVLTYVNAISSGDLPCMEN 314 (592)
T ss_dssp EEECCCCSCGGGGGGGGGSCGGGSCHHHHHHHHHHHHHHHHHCCCCEETTTEECBHHHHHHHHHHHHHHHHHTSCCBHHH
T ss_pred EEEECCCCCHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 89807978378876650398122799899999999999971044412069952359999999999999984799999654
Q ss_pred HH----HHHHHHHHHHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 68----998399999999999999731-2699996-68999999999999999988522704689999999999999999
Q 007480 324 LV----EVFNKGILERCLKLYNERMAK-VRLPLPE-QSLQDAHERSKKEAMDVFDVQHFGRQHAKKSVMQLDEEIQEAYK 397 (602)
Q Consensus 324 l~----e~~n~~av~~a~~~Y~~~M~~-~~lP~~~-eeL~~~H~~~~~eAl~~F~k~~fgd~~~~~~~~~L~~~i~~~~~ 397 (602)
+| +.+|..|+++|+++|++.|.+ +.+|++. ++|.+.|..|+++|+++|++++|+|.. ++|+++|++.|++.++
T Consensus 315 ~~~a~a~~e~~~av~~A~~~Y~~~M~~~~~~P~~~~~eL~~~H~~~~~~Al~~F~~~~~~d~~-~~~~~~L~~~i~~~~~ 393 (592)
T 1f5n_A 315 AVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFKDVD-HLFQKELAAQLEKKRD 393 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCSSHHHHHHHHHHHHHHHHHHHHHHCCCCGG-GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999876348998779999999999999999999985011458-9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HCCCCH-HHHHHHHHHHHHHHHCHHC-CCCCCHHHHHHHH
Q ss_conf 999999999999999999887875587-66--403303-8898876854054100121-3785015999999
Q 007480 398 NVIMANEYQSSKICESLYTRCEDKMDQ-LQ--VLRLPS-MAKFNAGFLQCNQSFAHEC-VGPSKANYEQRMM 464 (602)
Q Consensus 398 ~~~~~Ne~~S~~~C~~~~~~~e~kl~~-~~--~~~~~~-~~~~~~~~~~~~~~f~~~~-~GP~~~~~~~~~~ 464 (602)
+|+++|+.+|..+|+++++++.++|.+ +. ..+.|. ...|.+....+...|.+.. .||.++...+.+.
T Consensus 394 ~~~~~N~~~s~~~C~~ll~~l~~~l~~~i~~g~~~~p~g~~~~~~~~~~~~~~Y~~~~~kg~~~~~vl~~fl 465 (592)
T 1f5n_A 394 DFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYL 465 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 999999999899999999999999999985677678983999999999999999871477644899999999
No 3
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=1.00 E-value=1 Score=478.29 Aligned_cols=374 Identities=22% Similarity=0.361 Sum_probs=319.6
Q ss_pred CCCCCCCCCEEEECCCCCEEEECCCCCC-CCCC---CCCCEEEEEEECCCCCCHHHHHHHHHCCC--------------C
Q ss_conf 1487885247830899524884543221-2223---23228999998799999889999997277--------------8
Q 007480 24 IENFHQAFPIVEPDPGHTKLRLSREGLE-TIRR---ITNPIAAIAVIGPYRSGKSFLLNQLLSLS--------------C 85 (602)
Q Consensus 24 ~~~~~~~~plv~~~~~~~~l~v~~eal~-iL~~---I~~~V~VVsIiG~~gsGKStLLN~L~g~~--------------~ 85 (602)
....++|+|+|.+++ +++|.++++|++ +|.. ++.++.||+|+|++++|||||||.|+|.. +
T Consensus 28 ~~~~~~piqlv~~~~-~~~l~v~~eal~~iL~~~~~~~~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~ 106 (447)
T 3q5d_A 28 PVKKAGPVQVLIVKD-DHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEP 106 (447)
T ss_dssp -CCCCCEEEEEEECT-TSCEEECHHHHHHHHCCTTTTTSBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSB
T ss_pred CCCCCCCEEEEEECC-CCCEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 346898614888889-9988988999999984234578726999988999986999999996230135542112454454
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 889854445557886669809446754-4576227985146554445888712479999986311334315611123778
Q 007480 86 DEGFGVGHMRDTKTKGIWVWGNPVEME-IDGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREAD 164 (602)
Q Consensus 86 ~~GF~vg~t~~~~TkGIwi~~~p~~~~-~~~~~~~ivllDteG~~~~~~~t~~d~~ifaLa~LLSS~lIyN~~~~i~e~~ 164 (602)
..||+|++|+.++|+|||+|+.|+... ..+.+..++++||||+.+.+....+|+.+|+|++||||++|||+.+.+++++
T Consensus 107 ~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDTeG~~~~~~~~~~d~~ifal~~lLSs~~IyN~~~~i~~~~ 186 (447)
T 3q5d_A 107 LTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDD 186 (447)
T ss_dssp CCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHCSEEEEEESSSCCHHH
T ss_pred CCEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 66135798877750589971475334567887616999747765564310124379999999975488876213311778
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCC------C-CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 9899999724566313467865556742102343203688------0-00999999999719999899981113369999
Q 007480 165 ISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQ------G-KSVQEMVHDALQRVPNDKGDKNIDMVNQIRNS 237 (602)
Q Consensus 165 i~~L~~v~~L~~~i~~~~~~~~~~f~P~~flw~vvRDf~~------g-~t~~eyLe~aL~~~~~~~~~~~~~~ln~~r~~ 237 (602)
++.|..++++++.+..+ ....++| .|+|+| |||+. | .|+++||+++|+..++ ...+.+.+|++
T Consensus 187 l~~L~~~~e~~~~~~~~---~~~~~fp-~l~wvv-RD~~~~l~~~~g~~t~~eyLe~~L~~~~~-----~~~~~~~~r~~ 256 (447)
T 3q5d_A 187 LQHLQLFTEYGRLAMEE---TFLKPFQ-SLIFLV-RDWSFPYEFSYGADGGAKFLEKRLKVSGN-----QHEELQNVRKH 256 (447)
T ss_dssp HHHHHHHHHHHHHTSCC---CSSCSEE-EEEEEE-EEECCTTTSCSBHHHHHHHHHHHHHSSTT-----CSSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HCCCCCC-CEEEEE-EECCCCCCCCCCCCCHHHHHHHHHHHCCC-----CCHHHHHHHHH
T ss_conf 99989999999999875---0566788-248997-30454333357877889999999863657-----53778889999
Q ss_pred HHHHCCCCCEEECCCCCCHHCCC--CCCCCCCCCHHHHHHHHHHHHHHHH--HCCCCCCCEEEECCHHHHHHHHHHHHHH
Q ss_conf 97315887478716951001004--8999888898899999999999963--2088731408505078999999999997
Q 007480 238 LAIMGDNSTAFSLPQPHLLRTKL--CDMKDEELDPIYVKRREQLKKLVAS--VTRPKIVQGKFLNGNEFVAFMEQILEAL 313 (602)
Q Consensus 238 i~~~f~~~~cf~L~~P~~~~~~L--~d~~~~~Ldp~F~e~~~~L~~~I~~--~~~pK~l~g~~itG~~l~~li~~yv~aI 313 (602)
|..||++++||+||||+.+.... .+.+.++|+|+|++++++|+.+|++ ..++|..+|.++||++|+.+++.||++|
T Consensus 257 i~~~F~~~~cf~lp~P~~~v~~~~~~~~~l~~L~~~F~~~l~~l~~~i~~~~~~~~K~~~G~~vtg~~L~~~~~~yv~ai 336 (447)
T 3q5d_A 257 IHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIY 336 (447)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHCTTCCSBGGGSCHHHHHHHHHHHHHHHSTTTCCCCEETTEECBHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCEEEECCCCCCCHHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHH
T ss_conf 99867785499646755102211655034443067789999999888617220364455997605999999999999997
Q ss_pred CCCCCCCCCCHHH----HHHHHHHHHHHHHHHHHHHHC---CCCC-CHHHHHHHHHHHHHHHHHHHHHHC-CCCH-HHHH
Q ss_conf 2999778742689----983999999999999997312---6999-966899999999999999998852-2704-6899
Q 007480 314 NKGEIPSTGSLVE----VFNKGILERCLKLYNERMAKV---RLPL-PEQSLQDAHERSKKEAMDVFDVQH-FGRQ-HAKK 383 (602)
Q Consensus 314 N~G~iP~~~sl~e----~~n~~av~~a~~~Y~~~M~~~---~lP~-~~eeL~~~H~~~~~eAl~~F~k~~-fgd~-~~~~ 383 (602)
|+|.+|+++++++ .+|..++++|++.|++.|++. .+|+ ..++|.+.|+.++++|++.|++.+ +|.. ..++
T Consensus 337 n~~~~P~~~s~~~~~a~~~~~~a~~~A~~~Y~~~m~~~~~~~~p~~~~~~L~~~h~~~~~~al~~F~~~~~~g~~~~~~~ 416 (447)
T 3q5d_A 337 QGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSRR 416 (447)
T ss_dssp HHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCCHHHHHHHHHHHHHHHHHHHTTSCCSSCHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 27999994139999999999999999999999999997357889889999999999999999999998741264778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999
Q 007480 384 SVMQLDEEIQEAYKNVIMANEYQSS 408 (602)
Q Consensus 384 ~~~~L~~~i~~~~~~~~~~Ne~~S~ 408 (602)
++++|+++|++++++|+++|+.+..
T Consensus 417 ~~~~L~~~l~~~~~~~~~~Ne~k~~ 441 (447)
T 3q5d_A 417 YLQQLESEIDELYIQYIKHNDSKNI 441 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 9999999999999999998505575
No 4
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=1.00 E-value=1 Score=154.95 Aligned_cols=221 Identities=17% Similarity=0.265 Sum_probs=153.5
Q ss_pred CCEEEECCCCCEEEECCCCCCCCCCCCCCE---EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-EEECC
Q ss_conf 247830899524884543221222323228---99999879999988999999727788898544455578866-69809
Q 007480 31 FPIVEPDPGHTKLRLSREGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWG 106 (602)
Q Consensus 31 ~plv~~~~~~~~l~v~~eal~iL~~I~~~V---~VVsIiG~~gsGKStLLN~L~g~~~~~GF~vg~t~~~~TkG-Iwi~~ 106 (602)
-|++..++.+..|.-......+|+++++.+ ++++|+||||+|||||+++|+|+ .++++| |++.|
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL------------~~p~~G~I~i~G 89 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL------------ERPTEGSVLVDG 89 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS------------SCCSEEEEEETT
T ss_pred CCEEEEEEEEEEECCCCCCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCC------------CCCCCEEEEECC
T ss_conf 86599984899938988773788746999848989999958995599999999669------------999962999999
Q ss_pred CCCCCCC------CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 4467544------5762279851465544458887124799999863113343156111237789899999724566313
Q 007480 107 NPVEMEI------DGSRTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYG 180 (602)
Q Consensus 107 ~p~~~~~------~~~~~~ivllDteG~~~~~~~t~~d~~ifaLa~LLSS~lIyN~~~~i~e~~i~~L~~v~~L~~~i~~ 180 (602)
.++.... .+..+++++|+...+. ..|+.|++.|++.. ++.......+.+..+...++|.+
T Consensus 90 ~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~---~~TV~env~~~~~~-------~~~~~~~~~~~v~~lL~~vgL~~---- 155 (366)
T 3tui_C 90 QELTTLSESELTKARRQIGMIFQHFNLLS---SRTVFGNVALPLEL-------DNTPKDEVKRRVTELLSLVGLGD---- 155 (366)
T ss_dssp EECSSCCHHHHHHHHTTEEEECSSCCCCT---TSCHHHHHHHHHHH-------SCCCHHHHHHHHHHHHHHHTCGG----
T ss_pred EECCCCCHHHHHHHHCCEEEEECCCCCCC---CCCHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHCCCCH----
T ss_conf 99875898799987386899927875688---88999999999986-------59987899999999999769934----
Q ss_pred CCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHCCC
Q ss_conf 46786555674210234320368800099999999971999989998111336999997315887478716951001004
Q 007480 181 RVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKL 260 (602)
Q Consensus 181 ~~~~~~~~f~P~~flw~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~~~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L 260 (602)
..++.+.++|+++++...++ ++++ ..|.+ .+
T Consensus 156 ------------------------------------------~~~~~~~~LSGGqkQRVaIA---rAL~-~~P~l---LL 186 (366)
T 3tui_C 156 ------------------------------------------KHDSYPSNLSGGQKQRVAIA---RALA-SNPKV---LL 186 (366)
T ss_dssp ------------------------------------------GTTCCTTTSCHHHHHHHHHH---HHTT-TCCSE---EE
T ss_pred ------------------------------------------HHCCCHHHCCHHHHHHHHHH---HHHH-CCCCE---EE
T ss_conf ------------------------------------------76199455899999999999---9996-69999---99
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCH-HHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 8999888898899999999999963208873140850507-89999999999972999778742689983
Q 007480 261 CDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEVFN 329 (602)
Q Consensus 261 ~d~~~~~Ldp~F~e~~~~L~~~I~~~~~pK~l~g~~itG~-~l~~li~~yv~aIN~G~iP~~~sl~e~~n 329 (602)
+|||++.|||... .++.+.+.++.+....+-..+|+. ..+..+++.+-.+++|.+-..++..+.+.
T Consensus 187 lDEPTs~LD~~~~---~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~ 253 (366)
T 3tui_C 187 CDQATSALDPATT---RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 253 (366)
T ss_dssp EESTTTTSCHHHH---HHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHS
T ss_pred EECCCCCCCHHHH---HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9798756899999---999999999997379999999568999999699999998998999758999971
No 5
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=1.00 E-value=1 Score=151.74 Aligned_cols=204 Identities=15% Similarity=0.224 Sum_probs=145.0
Q ss_pred CCCCCCCCCCCCE---EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-EEECCCCCCCC-CCCCCEEEEE
Q ss_conf 3221222323228---99999879999988999999727788898544455578866-69809446754-4576227985
Q 007480 48 EGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-IDGSRTSVFY 122 (602)
Q Consensus 48 eal~iL~~I~~~V---~VVsIiG~~gsGKStLLN~L~g~~~~~GF~vg~t~~~~TkG-Iwi~~~p~~~~-~~~~~~~ivl 122 (602)
....+|+++++.+ ++++|+||||+||||||++|+|+ .++++| |++.|.++... .....+++++
T Consensus 14 g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl------------~~p~~G~I~i~G~~~~~~~~~~r~ig~Vf 81 (381)
T 3rlf_A 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL------------ETITSGDLFIGEKRMNDTPPAERGVGMVF 81 (381)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS------------SCCSEEEEEETTEECTTCCGGGSCEEEEC
T ss_pred CCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCC------------CCCCCEEEEECCEECCCCCHHHCCEEEEE
T ss_conf 999999656899879989999968995599999999769------------98897199999999987997788889990
Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 14655444588871247999998631133431561112377898999997245663134678655567421023432036
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 lDteG~~~~~~~t~~d~~ifaLa~LLSS~lIyN~~~~i~e~~i~~L~~v~~L~~~i~~~~~~~~~~f~P~~flw~vvRDf 202 (602)
|+...+. ..++.||+.|++.. +.......++++..+...+++.
T Consensus 82 Q~~~l~p---~ltV~eni~~~~~~-------~~~~~~~~~~~v~~~l~~~~L~--------------------------- 124 (381)
T 3rlf_A 82 QSYALYP---HLSVAENMSFGLKL-------AGAKKEVINQRVNQVAEVLQLA--------------------------- 124 (381)
T ss_dssp TTCCCCT---TSCHHHHHTHHHHH-------TTCCHHHHHHHHHHHHHHTTCG---------------------------
T ss_pred CCCCCCC---CCCHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHCCCC---------------------------
T ss_conf 6875789---99999999999977-------5999899999999999885994---------------------------
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 88000999999999719999899981113369999973158874787169510010048999888898899999999999
Q 007480 203 LQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~~~~~~~~~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~~~~~Ldp~F~e~~~~L~~~ 282 (602)
...++.+.+++++++|..+++ ++++ ..|.+ .+.|||++.||+... .++.+.
T Consensus 125 -------------------~~~~r~p~~LSGGqrQRVaiA---rAL~-~~P~l---LLLDEPts~LD~~~~---~~l~~~ 175 (381)
T 3rlf_A 125 -------------------HLLDRKPKALSGGQRQRVAIG---RTLV-AEPSV---FLLDEPLSNLDAALR---VQMRIE 175 (381)
T ss_dssp -------------------GGTTCCGGGSCHHHHHHHHHH---HHHH-HCCSE---EEEESTTTTSCHHHH---HHHHHH
T ss_pred -------------------HHHCCCHHHCCHHHHHHHHHH---HHHH-CCCCE---EEEECCCCCCCHHHH---HHHHHH
T ss_conf -------------------165399257999999999999---9998-19999---999898767999999---999999
Q ss_pred HHHHCCCCCCCEEEECCH-HHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 963208873140850507-89999999999972999778742689983
Q 007480 283 VASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEVFN 329 (602)
Q Consensus 283 I~~~~~pK~l~g~~itG~-~l~~li~~yv~aIN~G~iP~~~sl~e~~n 329 (602)
+..+.+.....-+.+|+. ..+..+.+.+-.+++|.+-..++..+.++
T Consensus 176 l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 176 ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp HHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHH
T ss_conf 999998679889999889999998699999998998999838999971
No 6
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=1.00 E-value=1 Score=151.60 Aligned_cols=205 Identities=17% Similarity=0.231 Sum_probs=142.3
Q ss_pred CCCCCCCCCCCCE---EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-EEECCCCCC----C-CCCCCCE
Q ss_conf 3221222323228---99999879999988999999727788898544455578866-698094467----5-4457622
Q 007480 48 EGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVE----M-EIDGSRT 118 (602)
Q Consensus 48 eal~iL~~I~~~V---~VVsIiG~~gsGKStLLN~L~g~~~~~GF~vg~t~~~~TkG-Iwi~~~p~~----~-~~~~~~~ 118 (602)
....+|+++++.+ ++++|+||||+||||||++|+|+ .++++| |++.|.++. . ...+..+
T Consensus 15 ~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl------------~~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 15 QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGF------------EQPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS------------SCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred CCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCC------------CCCCCCEEEECCEECCCCCCCCCHHHCCE
T ss_conf 998889753899959989999999980599999999669------------98997389999999754556655410888
Q ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 79851465544458887124799999863113343156111237789899999724566313467865556742102343
Q 007480 119 SVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLI 198 (602)
Q Consensus 119 ~ivllDteG~~~~~~~t~~d~~ifaLa~LLSS~lIyN~~~~i~e~~i~~L~~v~~L~~~i~~~~~~~~~~f~P~~flw~v 198 (602)
++++|+...+. ..++.||+.|++.. .........+++..+...+++.
T Consensus 83 g~vfQ~~~l~p---~ltV~eni~~~l~~-------~~~~~~~~~~~v~~~l~~~gL~----------------------- 129 (359)
T 3fvq_A 83 GYLVQEGVLFP---HLTVYRNIAYGLGN-------GKGRTAQERQRIEAMLELTGIS----------------------- 129 (359)
T ss_dssp EEECTTCCCCT---TSCHHHHHHTTSTT-------SSCCSHHHHHHHHHHHHHHTCG-----------------------
T ss_pred EEEECCCCCCC---CCCHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHCCCC-----------------------
T ss_conf 99907875789---99999999999987-------6998689999999999886990-----------------------
Q ss_pred HHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 20368800099999999971999989998111336999997315887478716951001004899988889889999999
Q 007480 199 QRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQ 278 (602)
Q Consensus 199 vRDf~~g~t~~eyLe~aL~~~~~~~~~~~~~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~~~~~Ldp~F~e~~~~ 278 (602)
...++.+.++|+++++..+++ ++++ ..|.+ .|.|||++.||+..++ +
T Consensus 130 -----------------------~~~~r~~~~LSGGq~QRValA---rAL~-~~P~l---LLLDEPts~LD~~~r~---~ 176 (359)
T 3fvq_A 130 -----------------------ELAGRYPHELSGGQQQRAALA---RALA-PDPEL---ILLDEPFSALDEQLRR---Q 176 (359)
T ss_dssp -----------------------GGTTSCGGGSCHHHHHHHHHH---HHHT-TCCSE---EEEESTTTTSCHHHHH---H
T ss_pred -----------------------HHHCCCHHHCCHHHHHHHHHH---HHHH-CCCCE---EEEECCCCCCCHHHHH---H
T ss_conf -----------------------375589245799999999999---9997-39999---9996974367999999---9
Q ss_pred HHHHHHHHCCCCCCCEEEECCH-HHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 9999963208873140850507-899999999999729997787426899839
Q 007480 279 LKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEVFNK 330 (602)
Q Consensus 279 L~~~I~~~~~pK~l~g~~itG~-~l~~li~~yv~aIN~G~iP~~~sl~e~~n~ 330 (602)
+.+.+....+....+-..+|+. ..+..+.+.+-.+++|.+-..++..+..+.
T Consensus 177 l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 177 IREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHC
T ss_conf 99999999985799899994999999987999999989989998189999749
No 7
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=1.00 E-value=1 Score=147.52 Aligned_cols=204 Identities=16% Similarity=0.271 Sum_probs=140.7
Q ss_pred CCCCCCCCCCCCE---EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-EEECCCCCCC-------CCCCC
Q ss_conf 3221222323228---99999879999988999999727788898544455578866-6980944675-------44576
Q 007480 48 EGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM-------EIDGS 116 (602)
Q Consensus 48 eal~iL~~I~~~V---~VVsIiG~~gsGKStLLN~L~g~~~~~GF~vg~t~~~~TkG-Iwi~~~p~~~-------~~~~~ 116 (602)
....+|+++++.+ ++++|+||||+||||||++|+|+ .++++| |++.|.++.. ...+.
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl------------~~p~~G~I~i~g~~~~~~~~~~~~~~~~r 81 (372)
T 1g29_1 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL------------EEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (372)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS------------SCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred CCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCC------------CCCCCCEEEECCEECCCCCCCCCCCHHHC
T ss_conf 998888313899969989999999993799999999769------------98996389999999865444345887679
Q ss_pred CEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf 22798514655444588871247999998631133431561112377898999997245663134678655567421023
Q 007480 117 RTSVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVW 196 (602)
Q Consensus 117 ~~~ivllDteG~~~~~~~t~~d~~ifaLa~LLSS~lIyN~~~~i~e~~i~~L~~v~~L~~~i~~~~~~~~~~f~P~~flw 196 (602)
.+++++|+...+. ..++.|++.|++.. ++......++.+..+...+++.
T Consensus 82 ~ig~v~Q~~~l~~---~ltv~eni~~~~~~-------~~~~~~~~~~~v~~~l~~~~L~--------------------- 130 (372)
T 1g29_1 82 DIAMVFQSYALYP---HMTVYDNIAFPLKL-------RKVPRQEIDQRVREVAELLGLT--------------------- 130 (372)
T ss_dssp SEEEECSCCCCCT---TSCHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHTCG---------------------
T ss_pred CEEEEECCCCCCC---CCCHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHCCCC---------------------
T ss_conf 8899927875689---98899999999977-------5999799999999999987991---------------------
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 43203688000999999999719999899981113369999973158874787169510010048999888898899999
Q 007480 197 LIQRDFLQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRR 276 (602)
Q Consensus 197 ~vvRDf~~g~t~~eyLe~aL~~~~~~~~~~~~~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~~~~~Ldp~F~e~~ 276 (602)
...++.+.++|+++++..+++ .+++ ..|.+ .|.|||++.||+..+
T Consensus 131 -------------------------~~~~r~~~~LSGGq~QRvalA---rAL~-~~P~l---LLLDEP~s~LD~~~r--- 175 (372)
T 1g29_1 131 -------------------------ELLNRKPRELSGGQRQRVALG---RAIV-RKPQV---FLMDEPLSNLDAKLR--- 175 (372)
T ss_dssp -------------------------GGTTCCGGGSCHHHHHHHHHH---HHHH-TCCSE---EEEECTTTTSCHHHH---
T ss_pred -------------------------HHHCCCCCCCCHHHHHHHHHH---HHHH-CCCCE---EEECCCCCCCCHHHH---
T ss_conf -------------------------376089112999999999999---9986-58999---998798756899999---
Q ss_pred HHHHHHHHHHCCCCCCCEEEECCH-HHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 999999963208873140850507-89999999999972999778742689983
Q 007480 277 EQLKKLVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEVFN 329 (602)
Q Consensus 277 ~~L~~~I~~~~~pK~l~g~~itG~-~l~~li~~yv~aIN~G~iP~~~sl~e~~n 329 (602)
.++.+.+.++.+.....-..+|+. ..+..+.+.+-.+++|.+-..++..+.++
T Consensus 176 ~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 176 VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 999999999998659899998899899998699999995998998489999973
No 8
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=146.73 Aligned_cols=203 Identities=14% Similarity=0.210 Sum_probs=138.7
Q ss_pred CCCCCCCCCCCCE---EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-EEECCCCCCCC-CCCCCEEEEE
Q ss_conf 3221222323228---99999879999988999999727788898544455578866-69809446754-4576227985
Q 007480 48 EGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-IDGSRTSVFY 122 (602)
Q Consensus 48 eal~iL~~I~~~V---~VVsIiG~~gsGKStLLN~L~g~~~~~GF~vg~t~~~~TkG-Iwi~~~p~~~~-~~~~~~~ivl 122 (602)
....+|+++++.+ ++++|+||||+||||||++|+|+ .++++| |++.|.++... ..+..+++++
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl------------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (359)
T 2yyz_A 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI------------YKPTSGEIYFDDVLVNDIPPKYREVGMVF 81 (359)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTS------------SCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred CCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCC------------CCCCCCEEEECCEECCCCCHHHCCEEEEE
T ss_conf 998889655899869989999968982399999999779------------98896299999999987986458489990
Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 14655444588871247999998631133431561112377898999997245663134678655567421023432036
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 lDteG~~~~~~~t~~d~~ifaLa~LLSS~lIyN~~~~i~e~~i~~L~~v~~L~~~i~~~~~~~~~~f~P~~flw~vvRDf 202 (602)
++...+. ..++.|++.|++.. ++......++.+.
T Consensus 82 Q~~~l~~---~ltv~eni~~~~~~-------~~~~~~~~~~~v~------------------------------------ 115 (359)
T 2yyz_A 82 QNYALYP---HMTVFENIAFPLRA-------RRISKDEVEKRVV------------------------------------ 115 (359)
T ss_dssp SSCCCCT---TSCHHHHHHGGGSS-------SCSHHHHTTHHHH------------------------------------
T ss_pred CCCCCCC---CCCHHHHHHHHHHH-------CCCCHHHHHHHHH------------------------------------
T ss_conf 6864579---98899999999976-------5998799999999------------------------------------
Q ss_pred CCCCCHHHHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 8800099999999971999-989998111336999997315887478716951001004899988889889999999999
Q 007480 203 LQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKK 281 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~-~~~~~~~~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~~~~~Ldp~F~e~~~~L~~ 281 (602)
++|+.+.. ...++.+.++|+++++..+++ .+++ ..|.+ .|.|||++.||+..+ .++.+
T Consensus 116 -----------~~l~~~~L~~~~~r~~~~LSgGq~QRvalA---rAL~-~~P~l---LLLDEP~s~LD~~~r---~~l~~ 174 (359)
T 2yyz_A 116 -----------EIARKLLIDNLLDRKPTQLSGGQQQRVALA---RALV-KQPKV---LLFDEPLSNLDANLR---MIMRA 174 (359)
T ss_dssp -----------HHHHHTTCGGGTTSCGGGSCHHHHHHHHHH---HHHT-TCCSE---EEEESTTTTSCHHHH---HHHHH
T ss_pred -----------HHHHHCCCCHHHCCCHHHCCHHHHHHHHHH---HHHH-CCCCE---EEEECCCCCCCHHHH---HHHHH
T ss_conf -----------999886995376289346999999999999---9997-19998---999897536899999---99999
Q ss_pred HHHHHCCCCCCCEEEECCH-HHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 9963208873140850507-89999999999972999778742689983
Q 007480 282 LVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEVFN 329 (602)
Q Consensus 282 ~I~~~~~pK~l~g~~itG~-~l~~li~~yv~aIN~G~iP~~~sl~e~~n 329 (602)
.+.++.+.....-..+|+. ..+..+.+.+-.+++|.+-..++..+..+
T Consensus 175 ~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 175 EIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp HHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9999998569989999189999998699999998998999679999973
No 9
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=1.00 E-value=1 Score=146.65 Aligned_cols=204 Identities=21% Similarity=0.350 Sum_probs=140.4
Q ss_pred CCCCCCCCCCCCE---EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-EEECCCCCCCC-CCCCCEEEEE
Q ss_conf 3221222323228---99999879999988999999727788898544455578866-69809446754-4576227985
Q 007480 48 EGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-IDGSRTSVFY 122 (602)
Q Consensus 48 eal~iL~~I~~~V---~VVsIiG~~gsGKStLLN~L~g~~~~~GF~vg~t~~~~TkG-Iwi~~~p~~~~-~~~~~~~ivl 122 (602)
....+|+++++.+ ++++|+||||+||||||++|+|+ .++++| |.+.|.++... ..+..+++++
T Consensus 26 g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl------------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 93 (355)
T 1z47_A 26 GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGL------------ERPTKGDVWIGGKRVTDLPPQKRNVGLVF 93 (355)
T ss_dssp TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS------------SCCSEEEEEETTEECTTCCGGGSSEEEEC
T ss_pred CCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCC------------CCCCCCEEEECCEECCCCCHHHCCEEEEE
T ss_conf 997899634899979979999989997099999999679------------98896199999999986876457489992
Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 14655444588871247999998631133431561112377898999997245663134678655567421023432036
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 lDteG~~~~~~~t~~d~~ifaLa~LLSS~lIyN~~~~i~e~~i~~L~~v~~L~~~i~~~~~~~~~~f~P~~flw~vvRDf 202 (602)
++...+. ..++.|++.|++.. ++......++.+..+...+++.
T Consensus 94 Q~~~l~~---~ltv~eni~~~l~~-------~~~~~~~~~~~v~~~l~~~gL~--------------------------- 136 (355)
T 1z47_A 94 QNYALFQ---HMTVYDNVSFGLRE-------KRVPKDEMDARVRELLRFMRLE--------------------------- 136 (355)
T ss_dssp GGGCCCT---TSCHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHTTCG---------------------------
T ss_pred CCCCCCC---CCCHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHCCCH---------------------------
T ss_conf 6863578---98899999999977-------4998789999999999876994---------------------------
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 88000999999999719999899981113369999973158874787169510010048999888898899999999999
Q 007480 203 LQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKL 282 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~~~~~~~~~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~~~~~Ldp~F~e~~~~L~~~ 282 (602)
...++.+.++|+++++..+++ .+++ ..|.+ .|.|||++.||+..+ .++.+.
T Consensus 137 -------------------~~~~r~~~~LSGGq~QRvalA---rAL~-~~P~l---LLLDEP~s~LD~~~r---~~l~~~ 187 (355)
T 1z47_A 137 -------------------SYANRFPHELSGGQQQRVALA---RALA-PRPQV---LLFDEPFAAIDTQIR---RELRTF 187 (355)
T ss_dssp -------------------GGTTSCGGGSCHHHHHHHHHH---HHHT-TCCSE---EEEESTTCCSSHHHH---HHHHHH
T ss_pred -------------------HHHCCCCCCCCHHHHHHHHHH---HHHH-CCCCE---EEEECCCCCCCHHHH---HHHHHH
T ss_conf -------------------586099201899999999999---9997-39998---999697436899999---999999
Q ss_pred HHHHCCCCCCCEEEECCH-HHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 963208873140850507-89999999999972999778742689983
Q 007480 283 VASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEVFN 329 (602)
Q Consensus 283 I~~~~~pK~l~g~~itG~-~l~~li~~yv~aIN~G~iP~~~sl~e~~n 329 (602)
+.++.+.....-..+|+. ..+..+.+.+-.+++|.+-..++..+..+
T Consensus 188 l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 188 VRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp HHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 999998669999999799999998699999998999999859999974
No 10
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=1.00 E-value=1 Score=146.40 Aligned_cols=203 Identities=17% Similarity=0.222 Sum_probs=140.7
Q ss_pred CCCCCCCCCCCCE---EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-EEECCCCCCCC-CCCCCEEEEE
Q ss_conf 3221222323228---99999879999988999999727788898544455578866-69809446754-4576227985
Q 007480 48 EGLETIRRITNPI---AAIAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEME-IDGSRTSVFY 122 (602)
Q Consensus 48 eal~iL~~I~~~V---~VVsIiG~~gsGKStLLN~L~g~~~~~GF~vg~t~~~~TkG-Iwi~~~p~~~~-~~~~~~~ivl 122 (602)
....+|+++++.+ ++++|+||||+||||||++|+|+ .++++| |++.|.++... ..+..+++++
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl------------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (362)
T 2it1_A 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI------------YKPTSGKIYFDEKDVTELPPKDRNVGLVF 81 (362)
T ss_dssp SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS------------SCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred CCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCC------------CCCCCEEEEECCEECCCCCHHHCCEEEEE
T ss_conf 997889755899979989999999993599999999669------------98885099999999986997578489994
Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 14655444588871247999998631133431561112377898999997245663134678655567421023432036
Q 007480 123 LDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDF 202 (602)
Q Consensus 123 lDteG~~~~~~~t~~d~~ifaLa~LLSS~lIyN~~~~i~e~~i~~L~~v~~L~~~i~~~~~~~~~~f~P~~flw~vvRDf 202 (602)
++...+. ..++.|++.|++.. ++......
T Consensus 82 Q~~~l~~---~ltv~eni~~~~~~-------~~~~~~~~----------------------------------------- 110 (362)
T 2it1_A 82 QNWALYP---HMTVYKNIAFPLEL-------RKAPREEI----------------------------------------- 110 (362)
T ss_dssp TTCCCCT---TSCHHHHHHHHHHH-------TTCCHHHH-----------------------------------------
T ss_pred CCCCCCC---CCCHHHHHHHHHHH-------CCCCHHHH-----------------------------------------
T ss_conf 6764578---98799999999876-------48987999-----------------------------------------
Q ss_pred CCCCCHHHHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 8800099999999971999-989998111336999997315887478716951001004899988889889999999999
Q 007480 203 LQGKSVQEMVHDALQRVPN-DKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKK 281 (602)
Q Consensus 203 ~~g~t~~eyLe~aL~~~~~-~~~~~~~~~ln~~r~~i~~~f~~~~cf~L~~P~~~~~~L~d~~~~~Ldp~F~e~~~~L~~ 281 (602)
.+.++++|+.+.. ...++.+.++|+++++..+++ .+++ ..|.+ .+.|||++.||+..+ .++.+
T Consensus 111 ------~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalA---rAL~-~~P~l---LLLDEP~s~LD~~~r---~~l~~ 174 (362)
T 2it1_A 111 ------DKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIA---RALV-KEPEV---LLLDEPLSNLDALLR---LEVRA 174 (362)
T ss_dssp ------HHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHH---HHHT-TCCSE---EEEESGGGGSCHHHH---HHHHH
T ss_pred ------HHHHHHHHHHCCCCHHHHCCHHHCCHHHHHHHHHH---HHHH-CCCCE---EEEECCCCCCCHHHH---HHHHH
T ss_conf ------99999999885990476089303899999999999---9997-29999---999895436899999---99999
Q ss_pred HHHHHCCCCCCCEEEECCH-HHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 9963208873140850507-89999999999972999778742689983
Q 007480 282 LVASVTRPKIVQGKFLNGN-EFVAFMEQILEALNKGEIPSTGSLVEVFN 329 (602)
Q Consensus 282 ~I~~~~~pK~l~g~~itG~-~l~~li~~yv~aIN~G~iP~~~sl~e~~n 329 (602)
.+.++.+.....-..+|+. ..+..+.+.+-.+++|.+-..++..+..+
T Consensus 175 ~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 175 ELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9999997579899998888899998699999998998999769999973
Done!