Your job contains 1 sequence.
>007481
MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL
LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP
DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML
FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK
TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT
DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK
RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK
EEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREK
NLPRKERRKLEAAREMLEDEDQVDKLQGSGKDKKEKAGISMVDLAYRRAKAVKAKQKALD
AGKIVKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHSFKSKSRYK
RR
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007481
(602 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2130918 - symbol:AT4G16630 species:3702 "Arabi... 1857 1.2e-191 1
UNIPROTKB|A4QYM6 - symbol:DRS1 "ATP-dependent RNA helicas... 1142 7.1e-116 1
DICTYBASE|DDB_G0281711 - symbol:ddx27 "DEAD/DEAH box heli... 1091 6.1e-114 2
ASPGD|ASPL0000062195 - symbol:AN10125 species:162425 "Eme... 1101 7.8e-114 2
UNIPROTKB|Q96GQ7 - symbol:DDX27 "Probable ATP-dependent R... 1061 1.3e-113 2
UNIPROTKB|A1A4H6 - symbol:DDX27 "Probable ATP-dependent R... 1055 2.3e-112 2
MGI|MGI:2385884 - symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) bo... 1045 4.3e-111 2
UNIPROTKB|F1Q073 - symbol:DDX27 "Uncharacterized protein"... 1051 5.5e-111 2
UNIPROTKB|J9P9C6 - symbol:DDX27 "Uncharacterized protein"... 1051 5.5e-111 2
UNIPROTKB|F1NQV5 - symbol:DDX27 "Uncharacterized protein"... 1035 3.9e-110 2
POMBASE|SPAC30D11.03 - symbol:ddx27 "ATP-dependent RNA he... 1059 3.4e-109 2
UNIPROTKB|E1C187 - symbol:DDX27 "Uncharacterized protein"... 1026 3.4e-109 2
ZFIN|ZDB-GENE-031001-8 - symbol:ddx27 "DEAD (Asp-Glu-Ala-... 1013 1.3e-107 2
FB|FBgn0021995 - symbol:Rs1 "Rs1" species:7227 "Drosophil... 978 1.6e-100 2
WB|WBGene00022148 - symbol:Y71G12B.8 species:6239 "Caenor... 968 3.2e-100 2
UNIPROTKB|I3LQ10 - symbol:LOC100626268 "Uncharacterized p... 957 2.9e-96 1
SGD|S000003931 - symbol:DRS1 "Nucleolar DEAD-box protein ... 949 2.0e-95 1
CGD|CAL0000864 - symbol:DRS1 species:5476 "Candida albica... 908 4.5e-91 1
UNIPROTKB|Q5ACK7 - symbol:DRS1 "ATP-dependent RNA helicas... 908 4.5e-91 1
GENEDB_PFALCIPARUM|PFL2475w - symbol:PFL2475w "DEAD/DEAH ... 440 3.6e-75 2
UNIPROTKB|Q8I4R9 - symbol:PFL2475w "DEAD/DEAH box helicas... 440 3.6e-75 2
ASPGD|ASPL0000013201 - symbol:AN4233 species:162425 "Emer... 675 2.2e-66 1
WB|WBGene00012059 - symbol:T26G10.1 species:6239 "Caenorh... 642 4.8e-66 2
UNIPROTKB|Q29S22 - symbol:DDX47 "Probable ATP-dependent R... 650 9.7e-64 1
MGI|MGI:1915005 - symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) bo... 650 9.7e-64 1
UNIPROTKB|G3V727 - symbol:Ddx47 "Protein Ddx47" species:1... 650 9.7e-64 1
SGD|S000001107 - symbol:RRP3 "Protein involved in rRNA pr... 650 9.7e-64 1
UNIPROTKB|I3LIB1 - symbol:LOC100625841 "Uncharacterized p... 595 1.6e-63 2
POMBASE|SPAC823.08c - symbol:SPAC823.08c "ATP-dependent R... 641 8.8e-63 1
UNIPROTKB|E2RN03 - symbol:DDX47 "Uncharacterized protein"... 640 1.1e-62 1
UNIPROTKB|Q9H0S4 - symbol:DDX47 "Probable ATP-dependent R... 639 1.4e-62 1
ZFIN|ZDB-GENE-050522-359 - symbol:zgc:112350 "zgc:112350"... 638 1.8e-62 1
FB|FBgn0032919 - symbol:CG9253 species:7227 "Drosophila m... 615 2.9e-62 2
UNIPROTKB|Q5ZLB0 - symbol:DDX47 "Uncharacterized protein"... 629 1.6e-61 1
TIGR_CMR|SO_3783 - symbol:SO_3783 "ATP-dependent RNA heli... 603 3.3e-61 2
UNIPROTKB|F1NYX0 - symbol:DDX49 "Uncharacterized protein"... 599 5.4e-61 2
TIGR_CMR|CPS_1125 - symbol:CPS_1125 "ATP-dependent RNA he... 586 6.9e-61 2
CGD|CAL0000056 - symbol:orf19.7546 species:5476 "Candida ... 620 1.5e-60 1
TAIR|locus:2173517 - symbol:AT5G60990 species:3702 "Arabi... 589 2.0e-59 2
UNIPROTKB|E2RBM7 - symbol:DDX49 "Uncharacterized protein"... 582 3.3e-59 2
TAIR|locus:2032910 - symbol:RH36 "RNA helicase 36" specie... 607 3.5e-59 1
UNIPROTKB|I3L976 - symbol:DDX47 "Uncharacterized protein"... 604 7.3e-59 1
UNIPROTKB|F1NA53 - symbol:DDX49 "Uncharacterized protein"... 599 2.5e-58 1
UNIPROTKB|Q48AV0 - symbol:CPS_0042 "ATP-dependent RNA hel... 599 2.5e-58 1
TIGR_CMR|CPS_0042 - symbol:CPS_0042 "ATP-dependent RNA he... 599 2.5e-58 1
UNIPROTKB|Q83DM8 - symbol:rhlE "ATP-dependent RNA helicas... 597 4.0e-58 1
TIGR_CMR|CBU_0670 - symbol:CBU_0670 "ATP-dependent RNA he... 597 4.0e-58 1
UNIPROTKB|P21507 - symbol:srmB "SrmB, DEAD-box RNA helica... 576 6.1e-58 2
RGD|1311124 - symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box po... 594 8.4e-58 1
UNIPROTKB|P96614 - symbol:cshA "DEAD-box ATP-dependent RN... 593 1.1e-57 1
MGI|MGI:2136689 - symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) bo... 592 1.4e-57 1
UNIPROTKB|Q9Y6V7 - symbol:DDX49 "Probable ATP-dependent R... 590 2.2e-57 1
UNIPROTKB|Q9KMW4 - symbol:VC_A0204 "ATP-dependent RNA hel... 590 2.2e-57 1
TIGR_CMR|VC_A0204 - symbol:VC_A0204 "ATP-dependent RNA he... 590 2.2e-57 1
UNIPROTKB|F1S7D9 - symbol:DDX49 "Uncharacterized protein"... 586 5.9e-57 1
TIGR_CMR|SO_1383 - symbol:SO_1383 "ATP-dependent RNA heli... 586 5.9e-57 1
UNIPROTKB|Q8EBV7 - symbol:SO_3388 "ATP-dependent RNA heli... 582 1.6e-56 1
TIGR_CMR|SO_3388 - symbol:SO_3388 "ATP-dependent RNA heli... 582 1.6e-56 1
UNIPROTKB|Q3AFI3 - symbol:CHY_0229 "ATP-dependent RNA hel... 581 2.0e-56 1
UNIPROTKB|Q5L3G9 - symbol:cshA "DEAD-box ATP-dependent RN... 581 2.0e-56 1
UNIPROTKB|Q65N62 - symbol:cshA "DEAD-box ATP-dependent RN... 581 2.0e-56 1
TIGR_CMR|CHY_0229 - symbol:CHY_0229 "ATP-dependent RNA he... 581 2.0e-56 1
UNIPROTKB|Q63GX5 - symbol:cshA "DEAD-box ATP-dependent RN... 580 2.5e-56 1
DICTYBASE|DDB_G0270396 - symbol:ddx49 "DEAD/DEAH box heli... 579 3.3e-56 1
ZFIN|ZDB-GENE-031030-3 - symbol:ddx49 "DEAD (Asp-Glu-Ala-... 579 3.3e-56 1
UNIPROTKB|A0R8U6 - symbol:cshA "DEAD-box ATP-dependent RN... 578 4.2e-56 1
UNIPROTKB|Q6HPE6 - symbol:cshA "DEAD-box ATP-dependent RN... 578 4.2e-56 1
UNIPROTKB|Q73EU1 - symbol:cshA "DEAD-box ATP-dependent RN... 578 4.2e-56 1
UNIPROTKB|Q81IT9 - symbol:cshA "DEAD-box ATP-dependent RN... 578 4.2e-56 1
UNIPROTKB|Q81VG0 - symbol:cshA "DEAD-box ATP-dependent RN... 578 4.2e-56 1
TIGR_CMR|BA_0247 - symbol:BA_0247 "ATP-dependent RNA heli... 578 4.2e-56 1
TIGR_CMR|GSU_0914 - symbol:GSU_0914 "ATP-dependent RNA he... 578 4.2e-56 1
UNIPROTKB|P0A9P6 - symbol:deaD "DeaD, DEAD-box RNA helica... 577 5.3e-56 1
UNIPROTKB|Q8EGU0 - symbol:SO_1501 "ATP-dependent RNA heli... 576 6.8e-56 1
TIGR_CMR|SO_1501 - symbol:SO_1501 "ATP-dependent RNA heli... 576 6.8e-56 1
DICTYBASE|DDB_G0280147 - symbol:ddx47 "DEAD/DEAH box heli... 575 8.6e-56 1
TIGR_CMR|CPS_4097 - symbol:CPS_4097 "ATP-dependent RNA he... 574 1.1e-55 1
UNIPROTKB|Q8EE19 - symbol:SO_2571 "ATP-dependent RNA heli... 543 2.0e-55 2
TIGR_CMR|SO_2571 - symbol:SO_2571 "ATP-dependent RNA heli... 543 2.0e-55 2
UNIPROTKB|Q81QF0 - symbol:BAS2301 "ATP-dependent RNA heli... 568 4.8e-55 1
TIGR_CMR|BA_2475 - symbol:BA_2475 "ATP-dependent RNA heli... 568 4.8e-55 1
TIGR_CMR|SO_4034 - symbol:SO_4034 "ATP-dependent RNA heli... 568 4.8e-55 1
UNIPROTKB|Q48PB7 - symbol:PSPPH_0449 "ATP-dependent RNA h... 566 7.8e-55 1
TIGR_CMR|SPO_1443 - symbol:SPO_1443 "ATP-dependent RNA he... 545 8.8e-55 2
POMBASE|SPAC31A2.07c - symbol:dbp10 "ATP-dependent RNA he... 382 9.4e-55 3
UNIPROTKB|P25888 - symbol:rhlE "ATP-dependent RNA helicas... 565 9.9e-55 1
TIGR_CMR|CPS_1418 - symbol:CPS_1418 "ATP-dependent RNA he... 565 9.9e-55 1
UNIPROTKB|Q9KU63 - symbol:VC_0660 "ATP-dependent RNA heli... 540 1.1e-54 2
TIGR_CMR|VC_0660 - symbol:VC_0660 "ATP-dependent RNA heli... 540 1.1e-54 2
WB|WBGene00019219 - symbol:H20J04.4 species:6239 "Caenorh... 542 1.8e-54 2
TIGR_CMR|CPS_2658 - symbol:CPS_2658 "ATP-dependent RNA he... 561 2.6e-54 1
UNIPROTKB|Q4K4H4 - symbol:rhlE_2 "Putative ATP-dependent ... 560 3.4e-54 1
POMBASE|SPBC543.06c - symbol:dbp8 "ATP-dependent RNA heli... 538 4.8e-54 2
GENEDB_PFALCIPARUM|PFB0860c - symbol:PFB0860c "RNA helica... 555 1.1e-53 1
UNIPROTKB|O96264 - symbol:PFB0860c "DEAD/DEAH box helicas... 555 1.1e-53 1
TIGR_CMR|DET_0183 - symbol:DET_0183 "ATP-dependent RNA he... 555 1.1e-53 1
TIGR_CMR|GSU_0491 - symbol:GSU_0491 "ATP-dependent RNA he... 555 1.1e-53 1
UNIPROTKB|Q4K8U0 - symbol:deaD "Cold-shock DEAD box prote... 551 3.0e-53 1
UNIPROTKB|Q0C4B9 - symbol:HNE_0695 "Putative ATP-dependen... 528 6.9e-53 2
UNIPROTKB|Q8ECL2 - symbol:SO_3125 "ATP-dependent RNA heli... 547 8.0e-53 1
WARNING: Descriptions of 806 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 1857 (658.8 bits), Expect = 1.2e-191, P = 1.2e-191
Identities = 390/617 (63%), Positives = 449/617 (72%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
MELNLSRPLLRACE LGY KPTPIQAACIPLALTGRD+C SAITGSGKTAAFALPTLERL
Sbjct: 170 MELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERL 229
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
L+RPKR+ A RVLILTPTRELAVQ+HSMI+ +AQFTDI+C L+VGGLS + QE LRSMP
Sbjct: 230 LFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMP 289
Query: 121 DIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTML 180
DIVVATPGRMIDHLRNSMS RLL+ GF+ EI ELVRLCPKRRQTML
Sbjct: 290 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTML 349
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSK 240
FSAT+TE+V EL+KLSL KPLRLSADPSA+RP LT NQEAVLLSLC++
Sbjct: 350 FSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLCTR 409
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF SKVIIFSGTKQAAHRLKILFGLA LKAAELHGNLTQAQRL++LELFRKQ VDFLIAT
Sbjct: 410 TFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIAT 469
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDIIGVQTVINYACPR++ SYVHRVGRTARAGREGYAVTFVTD+DRSLLK IAK
Sbjct: 470 DVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAK 529
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHK 420
+ GSKLKSR++ EQSI KWS+II++MEDQ +A++ LRKAEME KAENM+ H+
Sbjct: 530 KVGSKLKSRVIPEQSIVKWSQIIDEMEDQYSAVISAERDERALRKAEMEFAKAENMLEHR 589
Query: 421 EEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAXXXXXXXXXXXXXXX 480
+EI+ARPKRTWF+TEKEKKL +A+K S G +G E+ SA +A
Sbjct: 590 DEIYARPKRTWFMTEKEKKLVAQAEKDSA--GNPAGGELVSADRAEDLKMKEKRKREREK 647
Query: 481 XXXXXXXXXXXXXXXXXXD-------EDQV-DKLQGS--GKDKK----EKAGISMVDLAY 526
D ED+ D+ +G GKDKK +K G+++ DL Y
Sbjct: 648 NLPRKKRRKLEAAREMLEDNEGEEEEEDEEGDEKRGRSRGKDKKKQETDKKGLTLKDLGY 707
Query: 527 RRXXXXXXXXXXLDAGKIVKSN-GKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGI 585
R +D+GK+ + KK S + R +EM++LF SDM EKKQ R GG
Sbjct: 708 MRAKAVKAKQRAIDSGKMERPKPDKKQSRSKPRNQPRGEEMKDLFKSDMGEKKQGR-GGA 766
Query: 586 GKKPKHSFKSKSRYKRR 602
K KSK+ +K +
Sbjct: 767 AAAAKPRTKSKNSFKSK 783
Score = 185 (70.2 bits), Expect = 8.1e-11, P = 8.1e-11
Identities = 46/116 (39%), Positives = 66/116 (56%)
Query: 499 DEDQVDKLQGS--GKDKK----EKAGISMVDLAYRRXXXXXXXXXXLDAGKIVKSN-GKK 551
++++ D+ +G GKDKK +K G+++ DL Y R +D+GK+ + KK
Sbjct: 674 EDEEGDEKRGRSRGKDKKKQETDKKGLTLKDLGYMRAKAVKAKQRAIDSGKMERPKPDKK 733
Query: 552 SKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGK-KP----KHSFKSKSRYKRR 602
S + R +EM++LF SDM EKKQ R G KP K+SFKSK+RYKRR
Sbjct: 734 QSRSKPRNQPRGEEMKDLFKSDMGEKKQGRGGAAAAAKPRTKSKNSFKSKARYKRR 789
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 1142 (407.1 bits), Expect = 7.1e-116, P = 7.1e-116
Identities = 223/450 (49%), Positives = 304/450 (67%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRP+LR ++G++KPTPIQ+ IP+AL G+D+ G A+TGSGKTAAF +P LERLLY
Sbjct: 260 MSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLY 319
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK++P RV+IL PTRELA+Q H++ K+A TDI+ CL VGGLS K+QE+ LR PD+
Sbjct: 320 RPKKVPTSRVVILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQESELRLRPDV 379
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S R+LE GF+ E++E++ PK RQTMLFS
Sbjct: 380 IIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFS 439
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTF 242
AT+T VD LI++ L KP+RL D K TLT + L+ LC +
Sbjct: 440 ATMTSSVDNLIRVGLNKPVRLMVDSQKKTVVTLTQEFVRLRPGREEKRMGYLVYLCKNLY 499
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T +VIIF K+ AH +I+FGL L AELHG+++Q QR++++E FR V FL+ATD+
Sbjct: 500 TERVIIFFRQKKIAHHARIIFGLLGLSCAELHGSMSQIQRIQSVEAFRDGKVSFLLATDL 559
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV TVINY P+ L YVHRVGRTARAGR G A+T + DR ++KA K
Sbjct: 560 ASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAG 619
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAH 419
G+K+ SRI+ W I+++ED+V A+++ +L +A+ME K ENMI +
Sbjct: 620 KAQGAKISSRIIDAADADSWQAKIDELEDEVEAVMREEKEEKVLAQADMEMRKGENMIRY 679
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKADKASI 449
+++I ARPKRTWF TEK+KK A +A +A++
Sbjct: 680 EDDIKARPKRTWFETEKDKKAAREAGRAAL 709
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 1091 (389.1 bits), Expect = 6.1e-114, Sum P(2) = 6.1e-114
Identities = 222/438 (50%), Positives = 300/438 (68%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL+LSRPLL+A + LG+S+PTPIQA IPLAL G+DI SA TGSGKTAAF LP LERLL
Sbjct: 194 ELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLERLL 253
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+R AIRVLIL PTRELA+Q S++E +AQF++I CL+VGGLS K QE LR PD
Sbjct: 254 FRDSEYRAIRVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELRKSPD 313
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
+V+ATPGR+IDHL N+ RLL++GF EI+++V CP RQTMLF
Sbjct: 314 VVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTNRQTMLF 373
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SATL ++V L KLSL +P+R+ D + STL ++ A+LLSLC++
Sbjct: 374 SATLNDEVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQHLSDRPAILLSLCTRV 433
Query: 242 FTSK-VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
F IIF +K+ HRL+I+FGL+ LKAAELHGNL+Q QR ++L+ FR V++L+A+
Sbjct: 434 FNQGGTIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGQVNYLLAS 493
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDIIGV+TVINY P ++ +Y+HRVGRTARAG +G + +F+TDNDR LLK I
Sbjct: 494 DVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKDIVT 553
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHK 420
+A +K KSR V++ ++ W IE++ + + +I++ LRKAE KAE +I++
Sbjct: 554 KARNKAKSRSVSQDNVNFWRNRIEELTEDIKSIVREEMKEADLRKAEKTLDKAEKIISNA 613
Query: 421 EEIFARPKRTWFVTEKEK 438
+ PK W+ T++E+
Sbjct: 614 DANVETPK-VWYKTKQEE 630
Score = 53 (23.7 bits), Expect = 6.1e-114, Sum P(2) = 6.1e-114
Identities = 16/67 (23%), Positives = 33/67 (49%)
Query: 539 LDAGKIVKSNGKKSKHSSQESNSRAKEMRELFHSD---MSEKKQKRTGGIGKKPKHSFKS 595
+D+GK+ + + + K S +E+ R + +R + + ++KQ+ KK K +
Sbjct: 714 IDSGKMFERSQRAQKSSGKETK-RIESLRRNYMAGGALTDQEKQRVDNKKSKKNKRMIVN 772
Query: 596 KSRYKRR 602
K K+R
Sbjct: 773 KKEKKQR 779
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 1101 (392.6 bits), Expect = 7.8e-114, Sum P(2) = 7.8e-114
Identities = 218/451 (48%), Positives = 300/451 (66%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E NLSRP+LR A+ ++ PTPIQ IP+AL G+DI GSA+TGSGKTAAF +P LERLL
Sbjct: 302 EFNLSRPILRGLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLL 361
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+RP+++P RV IL PTRELAVQ +++ K+A +TDI C +VGG S + QE L+ PD
Sbjct: 362 FRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKKRPD 421
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR IDH+RNS S R+LE GF+ E++E++ PK RQTMLF
Sbjct: 422 VIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLF 481
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+T+ VD+LI++ L +P+RL D TL + LL LC +
Sbjct: 482 SATMTDSVDKLIRVGLNRPVRLMVDTKKNTAVTLVQEFVRLRPGREDKRLGYLLHLCKEV 541
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+T +VI+F K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR +V+FL+ATD
Sbjct: 542 YTGRVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFRDGNVNFLLATD 601
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+A+RGLDI GV+TVINY P+ YVHRVGRTARAGR G A T + DR ++KA K
Sbjct: 602 LASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKA 661
Query: 362 A---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIA 418
G+K+ SR+V W+ + ME+++ A+L+ L +AEM+ TK EN+I
Sbjct: 662 GKAQGAKIVSRVVDPSVADDWASKAKDMEEEIDAVLEEEKLEKQLAQAEMQVTKGENLIK 721
Query: 419 HKEEIFARPKRTWFVTEKEKKLAVKADKASI 449
H+ EI +RPKRTWF TE+EK++A K A +
Sbjct: 722 HEAEIKSRPKRTWFETEREKRVAKKIGAAEL 752
Score = 42 (19.8 bits), Expect = 7.8e-114, Sum P(2) = 7.8e-114
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 443 KADKASIEKGKGSG 456
+A KA + KGKG G
Sbjct: 795 RAGKAKLGKGKGKG 808
>UNIPROTKB|Q96GQ7 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
Length = 796
Score = 1061 (378.5 bits), Expect = 1.3e-113, Sum P(2) = 1.3e-113
Identities = 207/439 (47%), Positives = 295/439 (67%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 222 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 281
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR+ PD
Sbjct: 282 YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPD 341
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S R+L+ F ++ E++R+C RQTMLF
Sbjct: 342 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 401
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L ++EA++ +L ++T
Sbjct: 402 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT 461
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 462 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 521
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK I K
Sbjct: 522 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKA 581
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+LQ ++++E + A+ ++ K
Sbjct: 582 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGK 641
Query: 421 EEIFARPKRTWFVTEKEKK 439
E + P+R+WF T++E+K
Sbjct: 642 EAVVQEPERSWFQTKEERK 660
Score = 80 (33.2 bits), Expect = 1.3e-113, Sum P(2) = 1.3e-113
Identities = 19/57 (33%), Positives = 35/57 (61%)
Query: 546 KSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHSFKSKSRYKRR 602
+ GKKS + +N+ K +++ + + S +++K+ G ++ +FKSKSRYKRR
Sbjct: 740 QKQGKKSVFDEELTNTSKKALKQ-YRAGPSFEERKQLGLPHQRRGGNFKSKSRYKRR 795
>UNIPROTKB|A1A4H6 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
GeneID:514567 KEGG:bta:514567 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
Uniprot:A1A4H6
Length = 765
Score = 1055 (376.4 bits), Expect = 2.3e-112, Sum P(2) = 2.3e-112
Identities = 208/439 (47%), Positives = 292/439 (66%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 191 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 250
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ +++AQF I CL VGGL K QE ALR+ PD
Sbjct: 251 YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPD 310
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S R+L+ F ++ E++R+C RQTMLF
Sbjct: 311 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 370
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L ++EA++ +L +T
Sbjct: 371 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMRT 430
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 431 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 490
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K
Sbjct: 491 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKA 550
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+LQ ++K+E + A+ ++ K
Sbjct: 551 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQINTAQRLLEKGK 610
Query: 421 EEIFARPKRTWFVTEKEKK 439
E P+R+WF T++E+K
Sbjct: 611 EAPNPEPERSWFQTKEERK 629
Score = 74 (31.1 bits), Expect = 2.3e-112, Sum P(2) = 2.3e-112
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 550 KKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHSFKSKSRYKRR 602
KKS + +N+ K +++ + + S +++K+ G ++ +FKSKSRYKRR
Sbjct: 713 KKSVFDEELTNTSKKALKQ-YRAGPSFEERKKLGLPHQRRGGNFKSKSRYKRR 764
>MGI|MGI:2385884 [details] [associations]
symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
Length = 760
Score = 1045 (372.9 bits), Expect = 4.3e-111, Sum P(2) = 4.3e-111
Identities = 206/439 (46%), Positives = 292/439 (66%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 188 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 247
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ RVL+L PTREL +QVHS+ +++AQF I CL VGGL K QE ALR+ PD
Sbjct: 248 YKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPD 307
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S R+L+ F ++ E++R+C RQTMLF
Sbjct: 308 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 367
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L ++EA++ +L +T
Sbjct: 368 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMRT 427
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 428 FTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 487
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K
Sbjct: 488 VAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKA 547
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE++E V A+LQ ++++E + A+ ++A K
Sbjct: 548 AKAPVKARILPQDVILKFRDKIEKLEKDVYAVLQLEAEEKEMQQSEAQIDTAQRLLAKGK 607
Query: 421 EEIFARPKRTWFVTEKEKK 439
E P+R+WF T++E+K
Sbjct: 608 ETADQEPERSWFQTKEERK 626
Score = 72 (30.4 bits), Expect = 4.3e-111, Sum P(2) = 4.3e-111
Identities = 16/53 (30%), Positives = 36/53 (67%)
Query: 550 KKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHSFKSKSRYKRR 602
+KS + +N+ K +++ + + S +++K++G + ++ + +FKSKSRYKR+
Sbjct: 709 QKSVFDEELTNTSKKALKQ-YRAGPSFEERKQSG-LPRQRRGNFKSKSRYKRK 759
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 1051 (375.0 bits), Expect = 5.5e-111, Sum P(2) = 5.5e-111
Identities = 208/441 (47%), Positives = 294/441 (66%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 191 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 250
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ +++AQF +I CL VGGL K QE ALR+ PD
Sbjct: 251 YKPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAAPD 310
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S R+L+ F ++ E++R+C RQTMLF
Sbjct: 311 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 370
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L ++EA++ +L ++T
Sbjct: 371 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAALLTRT 430
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 431 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 490
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K
Sbjct: 491 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKA 550
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAH-- 419
A + +K+RI+ + I K+ IE+ME V A+LQ L+++E + A+ ++
Sbjct: 551 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKELQQSEAQINTAKRLLEREK 610
Query: 420 -KEEIFARPKRTWFVTEKEKK 439
KE P+R+WF T++E+K
Sbjct: 611 GKEASNHEPERSWFQTKEERK 631
Score = 65 (27.9 bits), Expect = 5.5e-111, Sum P(2) = 5.5e-111
Identities = 16/52 (30%), Positives = 32/52 (61%)
Query: 551 KSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHSFKSKSRYKRR 602
KS + +N+ K +++ + + S +++K+ G ++ +FKSKSRYKR+
Sbjct: 716 KSVFDEELTNTSRKALKQ-YRAGPSFEERKQLGLPHQRRGGNFKSKSRYKRK 766
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 1051 (375.0 bits), Expect = 5.5e-111, Sum P(2) = 5.5e-111
Identities = 208/441 (47%), Positives = 294/441 (66%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 212 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 271
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ +++AQF +I CL VGGL K QE ALR+ PD
Sbjct: 272 YKPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAAPD 331
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S R+L+ F ++ E++R+C RQTMLF
Sbjct: 332 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 391
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L ++EA++ +L ++T
Sbjct: 392 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAALLTRT 451
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 452 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 511
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K
Sbjct: 512 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKA 571
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAH-- 419
A + +K+RI+ + I K+ IE+ME V A+LQ L+++E + A+ ++
Sbjct: 572 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKELQQSEAQINTAKRLLEREK 631
Query: 420 -KEEIFARPKRTWFVTEKEKK 439
KE P+R+WF T++E+K
Sbjct: 632 GKEASNHEPERSWFQTKEERK 652
Score = 65 (27.9 bits), Expect = 5.5e-111, Sum P(2) = 5.5e-111
Identities = 16/52 (30%), Positives = 32/52 (61%)
Query: 551 KSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHSFKSKSRYKRR 602
KS + +N+ K +++ + + S +++K+ G ++ +FKSKSRYKR+
Sbjct: 737 KSVFDEELTNTSRKALKQ-YRAGPSFEERKQLGLPHQRRGGNFKSKSRYKRK 787
>UNIPROTKB|F1NQV5 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
Length = 758
Score = 1035 (369.4 bits), Expect = 3.9e-110, Sum P(2) = 3.9e-110
Identities = 207/440 (47%), Positives = 291/440 (66%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A ALG+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAF LP LERL+
Sbjct: 184 DMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVLERLI 243
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ +++AQF+ + CL VGGL K QE ALRS PD
Sbjct: 244 YKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDVKTQEAALRSGPD 303
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S R+L+ F ++ E++RLC + RQTMLF
Sbjct: 304 ILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSRHRQTMLF 363
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+TE+V +L +SL P R+ + + L ++EA++ +L ++T
Sbjct: 364 SATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALLTRT 423
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F V++F+ TK+ AHR+ IL GL L+ ELHGNL+QAQRLEAL F+ + +D L+ATD
Sbjct: 424 FPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQIDILVATD 483
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P YVHRVGRTARAGR G +V+ V + +R +LK I K
Sbjct: 484 VAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKA 543
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ + IE +E V A+L ++++E + KA+ + K
Sbjct: 544 AKTPVKARILPQDVILKFREKIENLEKDVYAVLCLEREEREMQQSEAQINKAKKQLEEGK 603
Query: 421 EEIFARP-KRTWFVTEKEKK 439
+E + +R+WF T +E+K
Sbjct: 604 QEAATKGVERSWFQTREERK 623
Score = 73 (30.8 bits), Expect = 3.9e-110, Sum P(2) = 3.9e-110
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 541 AGKIVKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHSFKSKSRYK 600
A K K K S + +N+ K +++ + + S + +KR G ++ +FKSKSRYK
Sbjct: 698 APKGPKRKKKVSVFDEELTNTSRKALKQ-YRAGPSFEDRKRLGMAQRRKGGNFKSKSRYK 756
Query: 601 RR 602
R+
Sbjct: 757 RK 758
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 1059 (377.8 bits), Expect = 3.4e-109, Sum P(2) = 3.4e-109
Identities = 217/452 (48%), Positives = 296/452 (65%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+NLSRP+L+ LG+ PT IQ IPLAL G+DI G+A+TGSGKTAAF +P LERLLY
Sbjct: 264 MNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLY 323
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK++P RVLIL PTRELA+Q HS+ KIA FTDI CL +GGLS K+QE LR PDI
Sbjct: 324 RPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDI 383
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V+ATPGR IDH+RNS R+LE GF+ E++E+++ CPK RQTMLFS
Sbjct: 384 VIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFS 443
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTF 242
AT+T+ VD+LI+LSL +P+R+ D LT + A+L+ LC + F
Sbjct: 444 ATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYLCKELF 503
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+ IIF +K AH+++++FGL +L A E+HG+L+Q QR+ ALE FR ++L+ATDV
Sbjct: 504 HRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDV 563
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RG+DI G++ VINY P Y+HRVGRTARAGR G A+T + DR +LK + K +
Sbjct: 564 ASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVLKGVFKNS 623
Query: 363 GS---KLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAH 419
+ KL +R + + K+ K IE++E V +L L+ AE + K EN++ +
Sbjct: 624 SAQNTKLVNRNLDFNKVEKFGKEIEELEPVVQKVLDEEKQERELKIAERDLKKGENIMKY 683
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKADKASIEK 451
+EI +RP RTWF +EK+K+ A KA +A +K
Sbjct: 684 GDEIRSRPARTWFQSEKDKQ-ASKASEAKDKK 714
Score = 40 (19.1 bits), Expect = 3.4e-109, Sum P(2) = 3.4e-109
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 546 KSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHSFKSKSR 598
K K S+ ++S ++ K+ E + KK K KK KSK +
Sbjct: 702 KQASKASEAKDKKSLAKRKKQMEKEEVPRAYKKTKNDRLSNKKSTKKSKSKRK 754
>UNIPROTKB|E1C187 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AADN02019007
IPI:IPI00822640 Ensembl:ENSGALT00000011297 ArrayExpress:E1C187
Uniprot:E1C187
Length = 759
Score = 1026 (366.2 bits), Expect = 3.4e-109, Sum P(2) = 3.4e-109
Identities = 207/441 (46%), Positives = 291/441 (65%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGS-GKTAAFALPTLERL 60
++NLSRPLL+A ALG+ +PTPIQ ACIP+ L G+DIC A TG+ GKTAAF LP LERL
Sbjct: 184 DMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTVGKTAAFILPVLERL 243
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+Y+P++ P RVL+L PTREL +QVHS+ +++AQF+ + CL VGGL K QE ALRS P
Sbjct: 244 IYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDVKTQEAALRSGP 303
Query: 121 DIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTML 180
DI++ATPGR+IDHL N S R+L+ F ++ E++RLC + RQTML
Sbjct: 304 DILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSRHRQTML 363
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSK 240
FSAT+TE+V +L +SL P R+ + + L ++EA++ +L ++
Sbjct: 364 FSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALLTR 423
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF V++F+ TK+ AHR+ IL GL L+ ELHGNL+QAQRLEAL F+ + +D L+AT
Sbjct: 424 TFPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQIDILVAT 483
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI GV+TVIN+ P YVHRVGRTARAGR G +V+ V + +R +LK I K
Sbjct: 484 DVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVK 543
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAH- 419
A + +K+RI+ + I K+ + IE +E V A+L ++++E + KA+ +
Sbjct: 544 AAKTPVKARILPQDVILKFREKIENLEKDVYAVLCLEREEREMQQSEAQINKAKKQLEEG 603
Query: 420 KEEIFARP-KRTWFVTEKEKK 439
K+E + +R+WF T +E+K
Sbjct: 604 KQEAATKGVERSWFQTREERK 624
Score = 73 (30.8 bits), Expect = 3.4e-109, Sum P(2) = 3.4e-109
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 541 AGKIVKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHSFKSKSRYK 600
A K K K S + +N+ K +++ + + S + +KR G ++ +FKSKSRYK
Sbjct: 699 APKGPKRKKKVSVFDEELTNTSRKALKQ-YRAGPSFEDRKRLGMAQRRKGGNFKSKSRYK 757
Query: 601 RR 602
R+
Sbjct: 758 RK 759
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 1013 (361.7 bits), Expect = 1.3e-107, Sum P(2) = 1.3e-107
Identities = 197/438 (44%), Positives = 288/438 (65%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A +G+ +PTPIQ AC+P+ L G+DIC A TG+GKTAAF LP LERL+
Sbjct: 205 DMNLSRPLLKAISTMGFKQPTPIQKACVPVGLLGKDICACAATGTGKTAAFMLPVLERLI 264
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P+ RVL+L PTREL +QVH++ ++AQFT I CL VGGL K QE ALR+ PD
Sbjct: 265 YKPRETQVTRVLVLVPTRELGIQVHTVARQLAQFTTISTCLAVGGLDLKSQEAALRAGPD 324
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR+IDHL N+ S R+L+ F ++ E++R+C +RQTMLF
Sbjct: 325 VLIATPGRLIDHLHNTPSFELSQIEILILDEADRMLDEYFEEQMKEIIRMCAYQRQTMLF 384
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT++E+V +L +SL +P+R+ + + L ++EA++ +L ++T
Sbjct: 385 SATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQEFVRIRPNKEGDREAIVAALLTRT 444
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F V++F+ TK+ AHR+ IL GL LK ELHGNL+Q QRLE+L F+ + +D L+ATD
Sbjct: 445 FQDHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLESLRRFKDEQIDILVATD 504
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAG+ G +V+ V + +R +LK I K+
Sbjct: 505 VAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVSLVGETERKMLKEIVKK 564
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHKE 421
A +K+R++ ++ I K+ +IE++E V A+L + +E + + A+ + E
Sbjct: 565 AKFPVKARVIPQEVILKFRDLIEKLEKDVYAVLCLEKEEKEMAHSEAQISSAQKRLTKSE 624
Query: 422 EIFARPKRTWFVTEKEKK 439
+ P RTWF T +E+K
Sbjct: 625 DEKQLP-RTWFQTNEERK 641
Score = 71 (30.1 bits), Expect = 1.3e-107, Sum P(2) = 1.3e-107
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 543 KIVKSN----GKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHSFKSKSR 598
K +K N GKKS + +N+ K +++ + + S + +KR G KK FKSK++
Sbjct: 715 KALKKNAGKAGKKSVFDKELTNTSKKNLKQ-YRAGPSFEDRKRLGLPNKKGGR-FKSKAK 772
Query: 599 YKRR 602
+KR+
Sbjct: 773 FKRK 776
>FB|FBgn0021995 [details] [associations]
symbol:Rs1 "Rs1" species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0042254
"ribosome biogenesis" evidence=NAS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0016779 HSSP:P10081 GeneTree:ENSGT00550000074997 KO:K13181
CTD:6247 EMBL:BT004908 RefSeq:NP_651970.1 UniGene:Dm.11481
SMR:Q7JQN4 STRING:Q7JQN4 EnsemblMetazoa:FBtr0088788 GeneID:44087
KEGG:dme:Dmel_CG2173 UCSC:CG2173-RA FlyBase:FBgn0021995
InParanoid:Q7JQN4 OMA:EHYIHRV OrthoDB:EOG42NGFQ GenomeRNAi:44087
NextBio:836725 Uniprot:Q7JQN4
Length = 782
Score = 978 (349.3 bits), Expect = 1.6e-100, Sum P(2) = 1.6e-100
Identities = 212/462 (45%), Positives = 289/462 (62%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPL+RA LGY PTPIQA+ IP+AL GRDICG A TG+GKTAA+ LPTLERLL
Sbjct: 161 QMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLL 220
Query: 62 YRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
YRP AI RVL+L PTREL QV+ + +++ QFT I L +GGL K QE LR P
Sbjct: 221 YRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLRQNP 280
Query: 121 DIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ATPGR+IDH++N+ S R+L+ F+ ++ E++ C K RQTML
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSK 240
FSAT++E V +L +SL KP+++ + + + L ++E +L SL +
Sbjct: 341 FSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICR 400
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF ++F TK+ AHRL IL GL ++A ELHGNLTQ QRLE+L+ F+++ +D LIAT
Sbjct: 401 TFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIAT 460
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI+GV+TVIN+ P Y+HRVGRTARAGR G +V+ + +R ++K I K
Sbjct: 461 DVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIK 520
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHK 420
A S +K+RI+ + I K+ + +E ++ IL L K E + +K E + +
Sbjct: 521 NAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNILDEEQAERQLAKTEQQLSKTERKLLGQ 580
Query: 421 EEIFARPKRTWFVT----EKEK-KLAVKA---DKASIEKGKG 454
+R WF T E EK +LA+ DKAS KGKG
Sbjct: 581 ----TNERRGWFQTKQQREAEKDRLALTTGDEDKASGGKGKG 618
Score = 39 (18.8 bits), Expect = 1.6e-100, Sum P(2) = 1.6e-100
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 426 RPKRTWFVTEKEK----KLAVKADKASIEKGKGSG 456
R K+ + K+K KL KA K KGK G
Sbjct: 737 RHKKMTKIAAKKKASSVKLTNKAGKNKFNKGKNFG 771
>WB|WBGene00022148 [details] [associations]
symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
Length = 739
Score = 968 (345.8 bits), Expect = 3.2e-100, Sum P(2) = 3.2e-100
Identities = 195/452 (43%), Positives = 283/452 (62%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSR +L+AC GYS PTPIQ ACIP+ALTG+DIC A TG+GKTAAF LP LER++
Sbjct: 152 QMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILERMI 211
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
YRPK RVL+L PTRELA+QV + K++ F + CL GGL K QE ALRS PD
Sbjct: 212 YRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALRSGPD 271
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
+VVATPGR+IDHL NS S R+LE F +++EL+RLC + RQT+LF
Sbjct: 272 VVVATPGRLIDHLHNSPSFNLSNIEVLVLDEADRMLEEAFRDQMNELIRLCAQNRQTLLF 331
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+TE++DEL +SL KP+++ + + L ++EA++ +L ++T
Sbjct: 332 SATMTEEIDELASMSLQKPVKIFINENTDTALKLRQEFIRIRAGRETDREAMVAALVTRT 391
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F + I+F TK+ R++IL GL +K ++ +LTQ QR+E+L F+K +D L++TD
Sbjct: 392 FQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESLSKFKKAEIDVLVSTD 451
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK- 360
+A+RGLDI GVQTVIN P+ + Y+HRVGRTARAG+ G +++ V +++R LLK I
Sbjct: 452 LASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEDERKLLKEIVNS 511
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHK 420
A LK R+VA + + + + I+++E+ + I + LR AE K +N +
Sbjct: 512 NADRTLKQRLVAPEVVEAYRRRIDELEETIQQIDEEDRAEKELRIAEASMAKTQNALEVG 571
Query: 421 EEIFA-RPKRTWFVTEKE-KKLAVKADKASIE 450
E A +R W + E + +K + +K ++
Sbjct: 572 ENGGAPAERRVWMMKESQIEKQRKREEKRQMK 603
Score = 46 (21.3 bits), Expect = 3.2e-100, Sum P(2) = 3.2e-100
Identities = 20/65 (30%), Positives = 26/65 (40%)
Query: 404 RKAEMEATKAENMIAHKEEIFARP-KRTWFVTEKEKKLAVK------ADKASIEKGKGSG 456
+KAE T + I H+ R KR K + V+ A KA+ K K S
Sbjct: 608 KKAEAAKTPEDIQIEHEAAFHVRAAKRARHSKNKRIRAVVESAGTKGAGKAAQNKKKASS 667
Query: 457 NEVTS 461
N TS
Sbjct: 668 NSKTS 672
>UNIPROTKB|I3LQ10 [details] [associations]
symbol:LOC100626268 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 Ensembl:ENSSSCT00000028964 OMA:RYLVALC
Uniprot:I3LQ10
Length = 684
Score = 957 (341.9 bits), Expect = 2.9e-96, P = 2.9e-96
Identities = 205/446 (45%), Positives = 285/446 (63%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A +G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 215 DMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 274
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ-----FTDIRCCLVVGGLSTKMQETAL 116
Y+P++ P RVL+L PTREL +QVHS+ +++AQ T I L GGL K QE AL
Sbjct: 275 YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQSSLCVITTISG-LFAGGLDVKSQEAAL 333
Query: 117 RSM-PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKR 175
R+ PDI++ATPGR+IDHL N S R+L+ F ++ E++R+C
Sbjct: 334 RAAXPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSLH 393
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLL 235
RQTMLFSAT+T++V +L +SL P+R+ + + L ++EA++
Sbjct: 394 RQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVA 453
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQR-LEALELFRKQHV 294
+L +TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QR LEAL F+ + +
Sbjct: 454 ALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRXLEALWRFKDEQI 513
Query: 295 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 354
D L+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V SL
Sbjct: 514 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSV--------SL 565
Query: 355 LKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAE 414
LK I K A + +K+RI+ + I K+ IE+ME V A+LQ ++K+E + A+
Sbjct: 566 LKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQINTAQ 625
Query: 415 NMIAH-KEEIFARPKRTWFVTEKEKK 439
++ KE P+R+WF T++E+K
Sbjct: 626 RLLEKGKEAPNPEPERSWFQTKEERK 651
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 949 (339.1 bits), Expect = 2.0e-95, P = 2.0e-95
Identities = 203/450 (45%), Positives = 282/450 (62%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRP+L+ +LGY KP+PIQ+A IP+AL G+DI A+TGSGKTAAF +P +ERLLY
Sbjct: 236 LSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 295
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD-IRCCLVVGGLSTKMQETALRSMPD 121
+P +I + RV++L PTRELA+QV + ++IA+F I L VGGL+ + QE L+S PD
Sbjct: 296 KPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPD 355
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR IDH+RNS S R+LE GF E++E++ L P RQ +LF
Sbjct: 356 IVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLLF 415
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSK- 240
SAT+ + L+ LSL KP+R+ DP K + LT + A+L +L K
Sbjct: 416 SATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHL-KPALLFNLIRKL 474
Query: 241 --TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
T ++++F K+ AHRL+I+ GL + ELHG+LTQ QRL+++ F+ V LI
Sbjct: 475 DPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLI 534
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN--DRSLLK 356
TD+A+RGLDI ++ VINY P+ Y+HRVGRTARAGREG +VTFV ++ DRS+++
Sbjct: 535 CTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVR 594
Query: 357 AIAKRAGS-------KLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEME 409
A K K R V I + +K++E M D + IL + +AEM+
Sbjct: 595 AAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMNDTIEDILVEEKEEKEILRAEMQ 654
Query: 410 ATKAENMIAHKEEIFARPKRTWFVTEKEKK 439
K ENM+ HK+EI ARP+RTWF +E +KK
Sbjct: 655 LRKGENMLKHKKEIQARPRRTWFQSESDKK 684
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
Identities = 202/461 (43%), Positives = 287/461 (62%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LSRP+L+ L ++KPTPIQ+A IP+AL G+DI A TGSGKT A+ +P +ERLLY
Sbjct: 135 LQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLLY 194
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD-IRCCLVVGGLSTKMQETALRSMPD 121
+P + +V+ILTPTRELA+QV+ +K++ + + L VGGL+ + QE L++ PD
Sbjct: 195 KPST--STKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRPD 252
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPK-RRQTML 180
IV+ATPGR+IDH+RNS S R+LE GF E+ E++ L PK +RQT+L
Sbjct: 253 IVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPKHKRQTLL 312
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSK 240
FSAT+ + +LI+LSL KP+R+ DP S L + A+L L K
Sbjct: 313 FSATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKLLQQFVRIRKRDQL-KPALLYQLL-K 370
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+S+V++F K+ AHRL+I+ GL LK +ELHG LTQ QRL+ ++ F+ V LI T
Sbjct: 371 GVSSRVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKSLEVPVLICT 430
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARGLDI ++ VINY P+ Y+HRVGRTARAGR+G ++TFV ++ + +AI K
Sbjct: 431 DLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFVGESSQE--RAIVK 488
Query: 361 RA--GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIA 418
A K ++ V + + +K++E E + +L+ L +AEME TKA N+I
Sbjct: 489 SAIVNGKGVAKTVDWKQAEETNKLLESKESVIDEVLEEEKEAKELLRAEMELTKASNLIK 548
Query: 419 HKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEV 459
H++EI +RPKRTWF E ++L K + +K K NEV
Sbjct: 549 HEQEIHSRPKRTWFKGEVMEQLTKHGKKVNSKKRKA--NEV 587
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
Identities = 202/461 (43%), Positives = 287/461 (62%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LSRP+L+ L ++KPTPIQ+A IP+AL G+DI A TGSGKT A+ +P +ERLLY
Sbjct: 135 LQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLLY 194
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD-IRCCLVVGGLSTKMQETALRSMPD 121
+P + +V+ILTPTRELA+QV+ +K++ + + L VGGL+ + QE L++ PD
Sbjct: 195 KPST--STKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRPD 252
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPK-RRQTML 180
IV+ATPGR+IDH+RNS S R+LE GF E+ E++ L PK +RQT+L
Sbjct: 253 IVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPKHKRQTLL 312
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSK 240
FSAT+ + +LI+LSL KP+R+ DP S L + A+L L K
Sbjct: 313 FSATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKLLQQFVRIRKRDQL-KPALLYQLL-K 370
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+S+V++F K+ AHRL+I+ GL LK +ELHG LTQ QRL+ ++ F+ V LI T
Sbjct: 371 GVSSRVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKSLEVPVLICT 430
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARGLDI ++ VINY P+ Y+HRVGRTARAGR+G ++TFV ++ + +AI K
Sbjct: 431 DLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFVGESSQE--RAIVK 488
Query: 361 RA--GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIA 418
A K ++ V + + +K++E E + +L+ L +AEME TKA N+I
Sbjct: 489 SAIVNGKGVAKTVDWKQAEETNKLLESKESVIDEVLEEEKEAKELLRAEMELTKASNLIK 548
Query: 419 HKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEV 459
H++EI +RPKRTWF E ++L K + +K K NEV
Sbjct: 549 HEQEIHSRPKRTWFKGEVMEQLTKHGKKVNSKKRKA--NEV 587
>GENEDB_PFALCIPARUM|PFL2475w [details] [associations]
symbol:PFL2475w "DEAD/DEAH box helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
Uniprot:Q8I4R9
Length = 717
Score = 440 (159.9 bits), Expect = 3.6e-75, Sum P(2) = 3.6e-75
Identities = 91/232 (39%), Positives = 141/232 (60%)
Query: 230 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 289
++A LL LC+ + + IIF TK+ H + +LF L L+ AELHG+++Q +R+E++ F
Sbjct: 373 RKASLLYLCNNIYKNHCIIFFKTKRETHLMYLLFDLLNLRCAELHGSMSQKKRIESIMKF 432
Query: 290 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 349
+K VDFL+ T++A+RG+DI V VINY P ++ YVHR+GRTAR G+EG A T
Sbjct: 433 KKAEVDFLLTTELASRGIDIDHVLYVINYNVPSNVIKYVHRIGRTARIGKEGIASTLYLQ 492
Query: 350 NDR----SLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRK 405
++ ++K + K K+ R +AE ++ W KII++ + ++ I+Q +
Sbjct: 493 KEKIEVKKIVKGLKKSKNLKILKRTIAENNVLVWYKIIKENKQKLNDIIQQEKIDKEIEM 552
Query: 406 AEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGN 457
+ K +NMI K+EI +RP RTWF+TEKEKK K K + +K K + N
Sbjct: 553 SNKSIDKIKNMITFKDEIMSRPARTWFLTEKEKKNLKKESKKN-DKDKNNNN 603
Score = 347 (127.2 bits), Expect = 3.6e-75, Sum P(2) = 3.6e-75
Identities = 89/255 (34%), Positives = 128/255 (50%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L +SRP L+ +S PT IQ IPLAL G+ I ++ TGSGKT AF LP LERLL
Sbjct: 91 DLYISRPFLKVLYEQKFSNPTYIQRDVIPLALEGKSILANSETGSGKTLAFVLPILERLL 150
Query: 62 Y----RPKR------IPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM 111
+ +R + LIL PTREL++Q + +I + ++ I L GG+ K
Sbjct: 151 QSVNIKMRRNNMKGSYNITKALILLPTRELSLQCYDVIRSLTKYVTITYSLFCGGIDIKQ 210
Query: 112 QETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRL 171
QE + DI V TPGR++D L NS S +LLELGF E +++ +
Sbjct: 211 QEYEFKKRNDIFVCTPGRILDLLLNSSSDFINYLEIVVFDEADKLLELGFKEECLKILDV 270
Query: 172 CPKRRQTMLFSATLTEDVDELIKLSLTKPL----RLSADPSAKRPSTLTXXXXXXXXXXX 227
C ++Q + FSATLT D+ +L SL P+ +S D + +T
Sbjct: 271 CKFKKQILFFSATLTSDIKQLANFSLKNPVFIQSGMSFDKNVDGKNTYNAYNTCNTYNDN 330
Query: 228 XNQEAVLLSLCSKTF 242
N V+ ++ S +F
Sbjct: 331 DNNNIVVNNIISNSF 345
>UNIPROTKB|Q8I4R9 [details] [associations]
symbol:PFL2475w "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
Uniprot:Q8I4R9
Length = 717
Score = 440 (159.9 bits), Expect = 3.6e-75, Sum P(2) = 3.6e-75
Identities = 91/232 (39%), Positives = 141/232 (60%)
Query: 230 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 289
++A LL LC+ + + IIF TK+ H + +LF L L+ AELHG+++Q +R+E++ F
Sbjct: 373 RKASLLYLCNNIYKNHCIIFFKTKRETHLMYLLFDLLNLRCAELHGSMSQKKRIESIMKF 432
Query: 290 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 349
+K VDFL+ T++A+RG+DI V VINY P ++ YVHR+GRTAR G+EG A T
Sbjct: 433 KKAEVDFLLTTELASRGIDIDHVLYVINYNVPSNVIKYVHRIGRTARIGKEGIASTLYLQ 492
Query: 350 NDR----SLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRK 405
++ ++K + K K+ R +AE ++ W KII++ + ++ I+Q +
Sbjct: 493 KEKIEVKKIVKGLKKSKNLKILKRTIAENNVLVWYKIIKENKQKLNDIIQQEKIDKEIEM 552
Query: 406 AEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGN 457
+ K +NMI K+EI +RP RTWF+TEKEKK K K + +K K + N
Sbjct: 553 SNKSIDKIKNMITFKDEIMSRPARTWFLTEKEKKNLKKESKKN-DKDKNNNN 603
Score = 347 (127.2 bits), Expect = 3.6e-75, Sum P(2) = 3.6e-75
Identities = 89/255 (34%), Positives = 128/255 (50%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L +SRP L+ +S PT IQ IPLAL G+ I ++ TGSGKT AF LP LERLL
Sbjct: 91 DLYISRPFLKVLYEQKFSNPTYIQRDVIPLALEGKSILANSETGSGKTLAFVLPILERLL 150
Query: 62 Y----RPKR------IPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM 111
+ +R + LIL PTREL++Q + +I + ++ I L GG+ K
Sbjct: 151 QSVNIKMRRNNMKGSYNITKALILLPTRELSLQCYDVIRSLTKYVTITYSLFCGGIDIKQ 210
Query: 112 QETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRL 171
QE + DI V TPGR++D L NS S +LLELGF E +++ +
Sbjct: 211 QEYEFKKRNDIFVCTPGRILDLLLNSSSDFINYLEIVVFDEADKLLELGFKEECLKILDV 270
Query: 172 CPKRRQTMLFSATLTEDVDELIKLSLTKPL----RLSADPSAKRPSTLTXXXXXXXXXXX 227
C ++Q + FSATLT D+ +L SL P+ +S D + +T
Sbjct: 271 CKFKKQILFFSATLTSDIKQLANFSLKNPVFIQSGMSFDKNVDGKNTYNAYNTCNTYNDN 330
Query: 228 XNQEAVLLSLCSKTF 242
N V+ ++ S +F
Sbjct: 331 DNNNIVVNNIISNSF 345
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 151/388 (38%), Positives = 210/388 (54%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL + L ACE +GY PTPIQ+ IPLAL GRD+ G A TGSGKTAAFALP L+ L+
Sbjct: 50 ELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALM 109
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ + L+L PTRELA Q+ E + +RC ++VGG+ Q AL P
Sbjct: 110 EAPQTLFG---LVLAPTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGKKPH 166
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ RLL++ F + +++R+ P+ R T LF
Sbjct: 167 IIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPRTRHTYLF 226
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT++ V+ L + SL+ P+R+S + STL ++ L+ L ++
Sbjct: 227 SATMSTKVESLQRASLSNPVRVSVSSKYQTVSTLQSSYICIPHK---HKNLYLVYLLNEF 283
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
IIF+ T R+ + A LHG L+Q+ RL AL FR + D L+ATD
Sbjct: 284 AGQSAIIFTTTVHETQRVAFMLRALGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATD 343
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V V N+ P D +Y+HRVGRTARAG+ G A++FVT D + I
Sbjct: 344 VAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQYDVEVWLRIEHA 403
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQ 389
KL V + + S+ + + Q
Sbjct: 404 LSKKLPEYQVEKDEVMVMSERVAEASRQ 431
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 642 (231.1 bits), Expect = 4.8e-66, Sum P(2) = 4.8e-66
Identities = 143/375 (38%), Positives = 205/375 (54%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL +S+PL AC+ LG+ KP+ IQ A +P AL G+D+ G A TGSGKT AFA+P L+ LL
Sbjct: 48 ELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLL 107
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ A L+LTPTRELA Q+ E + + ++VGG+ Q AL P
Sbjct: 108 DHPQ---AFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPH 164
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ R+L + F E+ +++++ P+ R+T LF
Sbjct: 165 IIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRTYLF 224
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+T+ V +L + SL P R+S + R T+ +E L+ L ++
Sbjct: 225 SATMTKKVSKLERASLRDPARVSV---SSRYKTVDNLKQHYIFVPNKYKETYLVYLLNEH 281
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ I+F T ++ ++ ++A LHG ++Q +RL +L F+ + + L+ TD
Sbjct: 282 AGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTD 341
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V VINY P YVHRVGRTARAGR G A+T VT D + I
Sbjct: 342 VAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKIEAN 401
Query: 362 AGSKLKSRIVAEQSI 376
G KL E +
Sbjct: 402 LGKKLDEYKCVENEV 416
Score = 48 (22.0 bits), Expect = 4.8e-66, Sum P(2) = 4.8e-66
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 539 LDAGKIVKSNGKKSKHSSQESNSRAK-EMRELFHSDMSEKKQKRTGGIG 586
LD K V++ +QE+ A+ EM+E+ S KK+++ G
Sbjct: 406 LDEYKCVENEVMVLVERTQEATENARIEMKEMDEKKKSGKKRRQNDDFG 454
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 144/365 (39%), Positives = 207/365 (56%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 30 DLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 89
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++C ++VGG+ + Q AL P
Sbjct: 90 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH 146
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR+IDHL N+ R+L + F E+ +++++ P+ R+T LF
Sbjct: 147 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 206
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+T+ V +L + +L P++ + S+K T+ ++ L+ + ++
Sbjct: 207 SATMTKKVQKLQRAALKNPVKCAV--SSKY-QTVEKLQQYYLFIPSKFKDTYLVYILNEL 263
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ +IF T R +L A LHG ++Q++RL +L F+ + L+ATD
Sbjct: 264 AGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATD 323
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 324 VASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHL 383
Query: 362 AGSKL 366
G KL
Sbjct: 384 IGKKL 388
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 144/365 (39%), Positives = 207/365 (56%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 28 DLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 87
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++C ++VGG+ + Q AL P
Sbjct: 88 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH 144
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR+IDHL N+ R+L + F E+ +++++ P+ R+T LF
Sbjct: 145 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+T+ V +L + +L P++ + S+K T+ ++ L+ + ++
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAV--SSKY-QTVEKLQQYYLFIPSKFKDTYLVYILNEL 261
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ +IF T R +L A LHG ++Q++RL +L F+ + L+ATD
Sbjct: 262 AGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATD 321
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 322 VASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHL 381
Query: 362 AGSKL 366
G KL
Sbjct: 382 IGKKL 386
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 144/365 (39%), Positives = 207/365 (56%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 28 DLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 87
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++C ++VGG+ + Q AL P
Sbjct: 88 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH 144
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR+IDHL N+ R+L + F E+ +++++ P+ R+T LF
Sbjct: 145 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+T+ V +L + +L P++ + S+K T+ ++ L+ + ++
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAV--SSKY-QTVEKLQQYYLFIPSKFKDTYLVYILNEL 261
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ +IF T R +L A LHG ++Q++RL +L F+ + L+ATD
Sbjct: 262 AGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATD 321
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 322 VASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHL 381
Query: 362 AGSKL 366
G KL
Sbjct: 382 IGKKL 386
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 152/390 (38%), Positives = 212/390 (54%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNL L++AC+ L YSKPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L RL
Sbjct: 85 ELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLW 144
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + A IL PTRELA Q+ + + +R +VGG++ Q L P
Sbjct: 145 HDQEPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 201
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP-KRRQTML 180
I++ATPGR++DHL N+ RLL++ F + ++++ P + R T L
Sbjct: 202 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 261
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSK 240
FSAT+T +D+L + SLT P++ + + TL + L+ L ++
Sbjct: 262 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL---KNTYLIYLLNE 318
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+IIF+ TK A RL L L A LHG+L Q QR+ +L+LF+ L+AT
Sbjct: 319 FIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVAT 378
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V V+NY P D SY+HRVGRTARAGR G +++ V+ D L+ I +
Sbjct: 379 DVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 438
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQV 390
G KL V + I +++ +V
Sbjct: 439 VLGKKLPKESVDKNIILTLRDSVDKANGEV 468
>UNIPROTKB|I3LIB1 [details] [associations]
symbol:LOC100625841 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 GeneTree:ENSGT00550000074997 EMBL:CU407277
Ensembl:ENSSSCT00000025578 OMA:VIAHYRE Uniprot:I3LIB1
Length = 442
Score = 595 (214.5 bits), Expect = 1.6e-63, Sum P(2) = 1.6e-63
Identities = 122/286 (42%), Positives = 183/286 (63%)
Query: 155 RLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPST 214
R+L+ F ++ E++R+C RQTMLFSAT+T++V +L +SL P+R+ + +
Sbjct: 21 RMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPF 80
Query: 215 LTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELH 274
L ++EA++ +L +TFT V++F+ TK+ AHR+ IL GL L+ ELH
Sbjct: 81 LRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELH 140
Query: 275 GNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRT 334
GNL+Q QRLEAL F+ + +D L+ATDVAARGLDI GV+TVIN+ P + YVHRVGRT
Sbjct: 141 GNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRT 200
Query: 335 ARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAIL 394
ARAGR G +V+ V + +R +LK I K A + +K+RI+ + I K+ IE+ME V A+L
Sbjct: 201 ARAGRAGRSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVL 260
Query: 395 QXXXXXXILRKAEMEATKAENMIAH-KEEIFARPKRTWFVTEKEKK 439
Q ++K+E + A+ ++ KE P+R+WF T++E+K
Sbjct: 261 QLEAEEKEMQKSEAQINTAQRLLEKGKEAPNPEPERSWFQTKEERK 306
Score = 71 (30.1 bits), Expect = 1.6e-63, Sum P(2) = 1.6e-63
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 550 KKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHSFKSKSRYKRR 602
KKS + +N+ K +++ + + S ++K+ G ++ +FKSKSRYKRR
Sbjct: 390 KKSVFDEELTNTSKKALKQ-YRAGPSFDERKQLGLPHQRRGGNFKSKSRYKRR 441
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
Identities = 154/424 (36%), Positives = 226/424 (53%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL + L ACE LG+ PTPIQ IP+ L RD+ G A TGSGKTAAFALP ++ L
Sbjct: 50 ELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELW 109
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P A+ +L PTRELA Q+ E I +R ++VGG+ Q AL P
Sbjct: 110 NNPSPFFAV---VLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPH 166
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
++V TPGR++DHL N+ RLL++ F I +++++ P R+T+LF
Sbjct: 167 VLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLF 226
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+T V++L + SL +P+R++ S+K ST+ +++ L+ L ++
Sbjct: 227 SATMTSKVEKLQRASLHQPVRVAV--SSKF-STVDTLIQRYLFFPFKHKDTYLVYLVNEL 283
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ +IIF+ T RL IL A LHG L+Q+ RL AL F+ L+ATD
Sbjct: 284 AGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATD 343
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V VINY P D +Y+HRVGRTARAGR G ++ VT D I
Sbjct: 344 VAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLEPFLRIEAT 403
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILR-KAEMEATKAENMIAHK 420
G K++ + ++ + S+ + E Q AI+Q + K ++ + + + +
Sbjct: 404 IGKKMQEYEIDKEGVFLLSERVG--EAQREAIIQMKEIHDRRKSKGKLHTKRKRDDLDRE 461
Query: 421 EEIF 424
E+I+
Sbjct: 462 EQIY 465
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
Identities = 143/365 (39%), Positives = 206/365 (56%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 54 DLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 113
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL P
Sbjct: 114 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 170
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR+IDHL N+ R+L + F E+ +++++ P+ R+T LF
Sbjct: 171 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 230
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+T+ V +L + +L P++ + S+K T+ ++ L+ + ++
Sbjct: 231 SATMTKKVQKLQRAALKNPVKCAV--SSKY-QTVEKLQQYYLFIPSKFKDTYLVYILNEL 287
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ +IF T R +L A LHG ++Q++RL +L F+ + L+ATD
Sbjct: 288 AGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATD 347
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 348 VASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHL 407
Query: 362 AGSKL 366
G KL
Sbjct: 408 IGKKL 412
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 142/365 (38%), Positives = 206/365 (56%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 28 DLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 87
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL P
Sbjct: 88 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N+ R+L + F E+ +++++ P+ R+T LF
Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+T+ V +L + +L P++ + S+K T+ ++ L+ + ++
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAV--SSKY-QTVEKLQQYYIFIPSKFKDTYLVYILNEL 261
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ +IF T R +L A LHG ++Q++RL +L F+ + L+ATD
Sbjct: 262 AGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATD 321
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 322 VASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHL 381
Query: 362 AGSKL 366
G KL
Sbjct: 382 IGKKL 386
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 139/375 (37%), Positives = 211/375 (56%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL ++ L AC+ LG+ KPT IQ IP+AL GRD+ G A TGSGKT AFA+P L+ LL
Sbjct: 83 ELGVTEVLCEACDQLGWKKPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFAVPVLQSLL 142
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+R+ L+LTPTRELA Q+ + + ++ ++VGG+ Q L P
Sbjct: 143 ACAQRL---HTLVLTPTRELAFQIAEQFDALGSSIGVKTAVIVGGIDMMSQALVLAKKPH 199
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
+V+ATPGR+IDH+ N+ R+L + F +E+ +++++ P+ R+T LF
Sbjct: 200 VVIATPGRLIDHMENTKGFNLRALKYLVMDEADRILNMDFESEVDKILKVIPRDRRTFLF 259
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+T+ V +L + +L P++ S S+K +T+ ++ L+S+ ++
Sbjct: 260 SATMTKKVQKLQRAALQDPVKCSV--SSKY-ATVDKLQQFYIFIPSKYKDCYLVSILNEL 316
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ ++F GT R+ +L + A LHG ++Q +RL AL F+ + L+ATD
Sbjct: 317 AGNSFMVFCGTCNNTQRVALLLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLLATD 376
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++TFVT D L + I
Sbjct: 377 VASRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEAL 436
Query: 362 AGSKLKSRIVAEQSI 376
G KL + E+ +
Sbjct: 437 IGKKLPAFPTQEEEV 451
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 615 (221.5 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
Identities = 135/365 (36%), Positives = 201/365 (55%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ L +AC+ L + P+ IQ IP+AL G+D+ G A TGSGKT AFALP L LL
Sbjct: 65 DLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALL 124
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A L+LTPTRELA Q+ E + I+CC+VVGG+ Q L P
Sbjct: 125 ENPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 181
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++DHL N R+L + F E+ +++++ P+ R+T LF
Sbjct: 182 IIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 241
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+T+ V +L + SL P+++ + + T+ ++ L+ + ++
Sbjct: 242 SATMTKKVKKLQRASLKDPVKVEV---SNKYQTVEQLQQSYLFIPVKYKDVYLVHILNEL 298
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ +IF T + ++ L A LHG ++Q +RL AL F+ ++ LI+TD
Sbjct: 299 AGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTD 358
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+T V+ D L + I
Sbjct: 359 VASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHL 418
Query: 362 AGSKL 366
G +L
Sbjct: 419 LGKQL 423
Score = 39 (18.8 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 575 SEKKQKRTGGIGKKPKHSFKSKS 597
+ K+ K+ GG G + SF K+
Sbjct: 477 ARKRMKQMGGTGGGGRKSFGKKN 499
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
Identities = 140/375 (37%), Positives = 209/375 (55%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG+ PT IQ IP+AL GRDI G A TGSGKT AFALP L+ LL
Sbjct: 29 DLGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPILQALL 88
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + + ++VGG+ + Q AL P
Sbjct: 89 DAPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPH 145
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++DHL N+ R+L + F E+ +++++ P+ R+T LF
Sbjct: 146 IIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 205
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+T+ V +L + +L P++ + S+K T+ +++ L+ + ++
Sbjct: 206 SATMTKQVQKLQRAALKNPVKCAV--SSKY-QTVEKLQQYYIFIPSKFKDSYLVYILNEL 262
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ +IF T R +L A LHG ++Q +RL +L F+ + L+ATD
Sbjct: 263 AGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLATD 322
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++TFVT D L + I
Sbjct: 323 VASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEHL 382
Query: 362 AGSKLKSRIVAEQSI 376
G KL + + E+ +
Sbjct: 383 IGKKLPAFPMQEEEV 397
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 603 (217.3 bits), Expect = 3.3e-61, Sum P(2) = 3.3e-61
Identities = 141/381 (37%), Positives = 210/381 (55%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS PL +A GY P+PIQA IP LTG+D+ +A TG+GKTA F LP LE L
Sbjct: 6 LGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLELLAK 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K + R L+LTPTRELA QV +E ++ +R +V GG+ Q LR D
Sbjct: 66 GHKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKLRHGVD 125
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++D ++ + + R+L++GF +I +++ L P +RQ ++F
Sbjct: 126 VLVATPGRLLDLVQQN-AVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQNLMF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT ++++ EL K + P+ +S P R + T + A+L+ L +
Sbjct: 185 SATFSDEIRELAKGLVNHPVEISVTP---RNAAATTVKQWICPVDKTQKSALLIQLIKQE 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++FS TK A+RL A + AA +HGN +Q R +AL F+ V L+ATD
Sbjct: 242 NWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V+ + LLK I
Sbjct: 302 IAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKDI--- 358
Query: 362 AGSKLKSRIVAEQSITKWSKI 382
+L +R++ Q + +S +
Sbjct: 359 --ERLINRVLERQEVEGFSPV 377
Score = 41 (19.5 bits), Expect = 3.3e-61, Sum P(2) = 3.3e-61
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 547 SNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHSFKSKSRYKR 601
+N K HS + S A E E ++D ++Q + G+ P+ + + ++ K+
Sbjct: 472 NNAKAKPHSGAQQRSHA-ERSEKSNNDGRRQEQPK----GRNPQSAKPASNQPKQ 521
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 599 (215.9 bits), Expect = 5.4e-61, Sum P(2) = 5.4e-61
Identities = 152/383 (39%), Positives = 207/383 (54%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L+ L+ +G S+PTP+QA+CIP L GRD G A TGSGKTAAF LP L+ L
Sbjct: 9 ELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQVLS 68
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P I L+LTPTRELA Q+ + + ++ C+VVGGL Q L P
Sbjct: 69 EDPY---GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKPH 125
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELG---FSAEIHELVRLCPKRRQT 178
+V+ATPGR+ DHLR+S + RLLE G F+A++ ++ P RRQT
Sbjct: 126 VVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVPARRQT 185
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 238
+LFSATLT+ ++EL L++ +P A A T+ ++A L+ L
Sbjct: 186 LLFSATLTDTLNELKSLAMNRPFFWEA---ASEVRTVDELDQRYLLVPEAVKDAYLVHLI 242
Query: 239 SKTFTSK-----VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 293
+TF + +IIF+ T + L ++ + + LH + Q QR AL F+
Sbjct: 243 -QTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSSI 301
Query: 294 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 353
LIATDVAARGLDI VQ VIN+ P Y+HRVGRTARAGR G ++T VT D
Sbjct: 302 FKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDIH 361
Query: 354 LLKAIAKRAGSKLKSRIVAEQSI 376
L+ AI + KL+ V E+ +
Sbjct: 362 LVHAIEEEIKLKLQEFSVEEKLV 384
Score = 43 (20.2 bits), Expect = 5.4e-61, Sum P(2) = 5.4e-61
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 557 QESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHSFKSK 596
+E N R + + E D+ EK++ I KK + F+ K
Sbjct: 411 KEINKRKQMILEGKDPDLEEKRKAELAKI-KKKNNKFREK 449
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 586 (211.3 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
Identities = 137/373 (36%), Positives = 204/373 (54%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L LS LL+A GY P+PIQA IP ++GRD+ +A TG+GKTA F LP L+RL
Sbjct: 10 DLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQRLS 69
Query: 62 Y-RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
+ ++ + +R LILTPTRELA Q+ IE ++ ++ +V GG+ Q LR
Sbjct: 70 SSKGNKVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQIARLRQ 129
Query: 119 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 178
D++VATPGR++D L N + R+L++GF +I +L+ PK RQ
Sbjct: 130 GVDVLVATPGRLLD-LYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTALPKDRQN 188
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 238
+LFSAT + ++ L K + PL +S D A+ ST + AVL L
Sbjct: 189 LLFSATFSPEIRALAKGMVNNPLEISVD--AEN-STAEKVTQWLTAVDKKRKPAVLTHLI 245
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+ +V++F+ TK A++L L AA +HGN +Q R +AL F+ V L+
Sbjct: 246 KENNWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSVKILV 305
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+AARG+DI + V+N+ P YVHR+GRTARAG G A++ V ++ LL I
Sbjct: 306 ATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADELDLLWGI 365
Query: 359 AKRAGSKLKSRIV 371
++ +++
Sbjct: 366 EHVIQQHIERKVI 378
Score = 55 (24.4 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
Identities = 11/53 (20%), Positives = 28/53 (52%)
Query: 542 GKIVKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHSFK 594
G++ +G++S ++ +N+ + + +D S +K+ G G KP+ + +
Sbjct: 413 GRVEHKDGQRSGRNANGNNAGGNKAKP--GNDSSRRKKPEYDGTGPKPRRAIR 463
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 136/365 (37%), Positives = 201/365 (55%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNL LL + E++ ++KPTPIQ+ IP AL G+DI G A TGSGKTAAFA+P L+ L
Sbjct: 127 ELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLW 186
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + P L+L PTREL Q+ + + +R +VGG+ Q L P
Sbjct: 187 HAQQ--PYF-ALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPH 243
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++DHL ++ RLL++ F + +++++ P +R T LF
Sbjct: 244 VIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTTYLF 303
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+T +++L + SL P+R++ + L + +L+ L ++
Sbjct: 304 SATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGY---KNTILIHLLNEF 360
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+I+F+ T A R +L + A LHG L+Q+QRL +L F+ + L+ATD
Sbjct: 361 MGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATD 420
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V VINY P D +Y+HRVGRTARAGR G +++ +T D + I
Sbjct: 421 VAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRIESV 480
Query: 362 AGSKL 366
G KL
Sbjct: 481 LGKKL 485
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 589 (212.4 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
Identities = 136/384 (35%), Positives = 201/384 (52%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL + L++ACE LG+ P+ IQA +P AL G+D+ G A TGSGKT AFA+P L+ LL
Sbjct: 13 ELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALL 72
Query: 62 -Y----RPKR----IPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 112
Y PK+ PA +L+PTRELA+Q+ E + +RC ++VGG+ Q
Sbjct: 73 EYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQ 132
Query: 113 ETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLC 172
AL P ++VATPGR+ DH+ ++ RLL F +++++
Sbjct: 133 TIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEI 192
Query: 173 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEA 232
P R+T LFSAT+T+ V +L + L P+++ A A + ST+ ++
Sbjct: 193 PLERKTFLFSATMTKKVRKLQRACLRNPVKIEA---ASKYSTVDTLKQQYRFVAAKYKDC 249
Query: 233 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 292
L+ + S+ S +IF+ T L ++ +A + G +TQ++RL AL F+
Sbjct: 250 YLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAG 309
Query: 293 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 352
+ L+ TDVA+RGLDI V VINY P + Y+HRVGRTARAGR G ++ V +
Sbjct: 310 ECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYEL 369
Query: 353 SLLKAIAKRAGSKLKSRIVAEQSI 376
I K G KL E +
Sbjct: 370 EWYIQIEKLIGKKLPEYPAEEDEV 393
Score = 38 (18.4 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 499 DEDQVDKLQGSGKDK--KEKAG 518
D+++ ++ G KD+ KE+ G
Sbjct: 423 DDEESERFLGGNKDRGNKERGG 444
Score = 37 (18.1 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 499 DEDQVDKLQGSGKDKK 514
++D+ +K +G KDKK
Sbjct: 434 NKDRGNKERGGNKDKK 449
>UNIPROTKB|E2RBM7 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
NextBio:20858886 Uniprot:E2RBM7
Length = 488
Score = 582 (209.9 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 146/383 (38%), Positives = 201/383 (52%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL LS L+ C LG +PTP+Q CIP L GRD G A TGSGKTAAF LP L++L
Sbjct: 6 ELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLS 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P I L+LTPTRELA Q+ + + ++ C++VGG+ Q L P
Sbjct: 66 EDPY---GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPH 122
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELG---FSAEIHELVRLCPKRRQT 178
+V+ATPGR+ DHLR+S + RLLE G F+ ++ ++ P RRQT
Sbjct: 123 VVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTRRQT 182
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 238
+LFSATLT+ + EL L+ +P A + T+ ++A L+ L
Sbjct: 183 LLFSATLTDTLKELQGLATNQPFFWEAQAPVR---TVEQLDQRYLLVPEKVKDAYLVHLI 239
Query: 239 SKTFTSK-----VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 293
+ F + +IIF+ T + L ++ LH + Q +R AL F+
Sbjct: 240 -QNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSI 298
Query: 294 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 353
LIATDVA+RGLDI VQ VIN+ P Y+HRVGRTARAGR+G A+T VT D
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358
Query: 354 LLKAIAKRAGSKLKSRIVAEQSI 376
L+ AI ++ +L+ V E +
Sbjct: 359 LVHAIEEQIKKQLEELSVEEAKV 381
Score = 43 (20.2 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 21/74 (28%), Positives = 33/74 (44%)
Query: 381 KIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHKEEIFARPKRTWFVTE-KEKK 439
K +E++ + A +LQ ++R+ E E K+EI KR + E K+
Sbjct: 369 KQLEELSVEEAKVLQILTQVNVVRR-ECEIKLEAANFDEKKEI---NKRKQLILEGKDPD 424
Query: 440 LAVKADKASIEKGK 453
L K KA + K K
Sbjct: 425 LEAKR-KAELAKIK 437
>TAIR|locus:2032910 [details] [associations]
symbol:RH36 "RNA helicase 36" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] [GO:0009791 "post-embryonic development"
evidence=IMP] [GO:0090406 "pollen tube" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0009561 "megagametogenesis"
evidence=IMP] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
GO:GO:0009791 GO:GO:0009561 EMBL:AC006341 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
HOGENOM:HOG000268802 OMA:EVRTVEQ GO:GO:0090406 IPI:IPI00521131
PIR:G86297 RefSeq:NP_173078.1 UniGene:At.51634
ProteinModelPortal:Q9SA27 SMR:Q9SA27 PaxDb:Q9SA27 PRIDE:Q9SA27
EnsemblPlants:AT1G16280.1 GeneID:838197 KEGG:ath:AT1G16280
KEGG:dosa:Os07t0633500-00 GeneFarm:1012 TAIR:At1g16280
InParanoid:Q9SA27 PhylomeDB:Q9SA27 ProtClustDB:CLSN2679781
Genevestigator:Q9SA27 GermOnline:AT1G16280 Uniprot:Q9SA27
Length = 491
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 145/385 (37%), Positives = 204/385 (52%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L+ + C+ LG KPTP+Q C+P L GRD+ G A TGSGKTAAFALP L RL
Sbjct: 63 LGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAE 122
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P + A L++TPTRELA Q+ + + ++RC ++VGG+ Q +L S P I
Sbjct: 123 DPYGVFA---LVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHI 179
Query: 123 VVATPGRMIDHLRNS--MSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTML 180
V+ TPGR+ L N+ + R+L++GF E+ + + PK RQT+L
Sbjct: 180 VITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTLL 239
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSK 240
FSAT+T ++ L++ S K A K TLT +LS
Sbjct: 240 FSATMTSNLQALLEHSSNKAYFYEAYEGLKTVDTLTQQFIFEDKDAKELYLVHILSQMED 299
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+IF T + RL ++ ++ +H +Q+ RL AL F+ V L+AT
Sbjct: 300 KGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVPILLAT 359
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V VINY PRD YVHRVGRTARAGR G AV+ +T+ D L+ I +
Sbjct: 360 DVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEE 419
Query: 361 RAGSKLK---SRIVAEQ-SITKWSK 381
G K++ +++ + +TK SK
Sbjct: 420 EVGKKMEPYNKKVITDSLEVTKVSK 444
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 136/347 (39%), Positives = 197/347 (56%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 27 DLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 86
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++C ++VGG+ + Q AL P
Sbjct: 87 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH 143
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR+IDHL N+ R+L + F E+ +++++ P+ R+T LF
Sbjct: 144 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 203
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+T+ V +L + +L P++ + S+K T+ ++ L+ + ++
Sbjct: 204 SATMTKKVQKLQRAALKNPVKCAV--SSKY-QTVEKLQQYYLFIPSKFKDTYLVYILNEL 260
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ +IF T R +L A LHG ++Q++RL +L F+ + L+ATD
Sbjct: 261 AGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATD 320
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR--EGYAVTF 346
VA+RGLDI V V+N+ P Y+HRVGRTARAGR AVTF
Sbjct: 321 VASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRCWSQRAVTF 367
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 152/383 (39%), Positives = 207/383 (54%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L+ L+ +G S+PTP+QA+CIP L GRD G A TGSGKTAAF LP L+ L
Sbjct: 6 ELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQVLS 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P I L+LTPTRELA Q+ + + ++ C+VVGGL Q L P
Sbjct: 66 EDPY---GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKPH 122
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELG---FSAEIHELVRLCPKRRQT 178
+V+ATPGR+ DHLR+S + RLLE G F+A++ ++ P RRQT
Sbjct: 123 VVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVPARRQT 182
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 238
+LFSATLT+ ++EL L++ +P A A T+ ++A L+ L
Sbjct: 183 LLFSATLTDTLNELKSLAMNRPFFWEA---ASEVRTVDELDQRYLLVPEAVKDAYLVHLI 239
Query: 239 SKTFTSK-----VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 293
+TF + +IIF+ T + L ++ + + LH + Q QR AL F+
Sbjct: 240 -QTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSSI 298
Query: 294 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 353
LIATDVAARGLDI VQ VIN+ P Y+HRVGRTARAGR G ++T VT D
Sbjct: 299 FKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDIH 358
Query: 354 LLKAIAKRAGSKLKSRIVAEQSI 376
L+ AI + KL+ V E+ +
Sbjct: 359 LVHAIEEEIKLKLQEFSVEEKLV 381
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 141/356 (39%), Positives = 200/356 (56%)
Query: 4 NLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL-Y 62
+L LL+A Y +PT IQ IPL L D+ A TG+GKTAAFALP L++L+
Sbjct: 11 SLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLISV 70
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+P + P +R L+LTPTRELA QVH QFTD+ + GG+STK Q + L+ DI
Sbjct: 71 QPCK-PELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDI 129
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR++D LR S R+L++GF EI ++ + PK +QT+LFS
Sbjct: 130 LIATPGRLLDLLRTE-SVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQTLLFS 188
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTF 242
AT +D+ ++ K L +P + D K + + L+ S+ +
Sbjct: 189 ATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVDADRKRELTSFLIG--SRNW 246
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+V++F+ TKQ A L +K+ +HG+ +Q R +AL F++ V LIATDV
Sbjct: 247 -KQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALIATDV 305
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
AARG+DI G+ VINY P + YVHR+GRTARAG G AV+ V+ + LL AI
Sbjct: 306 AARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEWLLTAI 361
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 141/356 (39%), Positives = 200/356 (56%)
Query: 4 NLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL-Y 62
+L LL+A Y +PT IQ IPL L D+ A TG+GKTAAFALP L++L+
Sbjct: 11 SLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLISV 70
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+P + P +R L+LTPTRELA QVH QFTD+ + GG+STK Q + L+ DI
Sbjct: 71 QPCK-PELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDI 129
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR++D LR S R+L++GF EI ++ + PK +QT+LFS
Sbjct: 130 LIATPGRLLDLLRTE-SVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQTLLFS 188
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTF 242
AT +D+ ++ K L +P + D K + + L+ S+ +
Sbjct: 189 ATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVDADRKRELTSFLIG--SRNW 246
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+V++F+ TKQ A L +K+ +HG+ +Q R +AL F++ V LIATDV
Sbjct: 247 -KQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALIATDV 305
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
AARG+DI G+ VINY P + YVHR+GRTARAG G AV+ V+ + LL AI
Sbjct: 306 AARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEWLLTAI 361
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
Identities = 148/376 (39%), Positives = 210/376 (55%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS LLRA GY +PTP+Q IP+ L RD+ +A TG+GKTA F LP L+RL
Sbjct: 15 LGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFV 74
Query: 63 -RP--KRI--PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 117
RP +R P IR LILTPTRELAVQV + ++ ++ +V GG+S K Q LR
Sbjct: 75 SRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINHLR 134
Query: 118 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQ 177
DI+VATPGR++D L N R+L++GF +I +++L P+ RQ
Sbjct: 135 RGVDILVATPGRLLD-LVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQ 193
Query: 178 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 237
+LFSAT ++++ EL L P + A+R +T ++ LLS
Sbjct: 194 NLLFSATFSKEIKELTDKLLHSPALIEV---ARR-NTAAARITHVVHPVDRQRKRELLSF 249
Query: 238 C--SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
SK + +V++F+ TK A+RL L +A +HGN +QA R+ AL F++ +
Sbjct: 250 MIGSKNWR-QVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIR 308
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARGLDI + VIN+ P YVHRVGRT RA +G A++ V+ ++ LL
Sbjct: 309 VLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLL 368
Query: 356 KAIAKRAGSKLKSRIV 371
+ I K SK+ ++
Sbjct: 369 RDIEKLLQSKMPQEVI 384
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
Identities = 148/376 (39%), Positives = 210/376 (55%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS LLRA GY +PTP+Q IP+ L RD+ +A TG+GKTA F LP L+RL
Sbjct: 15 LGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFV 74
Query: 63 -RP--KRI--PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 117
RP +R P IR LILTPTRELAVQV + ++ ++ +V GG+S K Q LR
Sbjct: 75 SRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINHLR 134
Query: 118 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQ 177
DI+VATPGR++D L N R+L++GF +I +++L P+ RQ
Sbjct: 135 RGVDILVATPGRLLD-LVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQ 193
Query: 178 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 237
+LFSAT ++++ EL L P + A+R +T ++ LLS
Sbjct: 194 NLLFSATFSKEIKELTDKLLHSPALIEV---ARR-NTAAARITHVVHPVDRQRKRELLSF 249
Query: 238 C--SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
SK + +V++F+ TK A+RL L +A +HGN +QA R+ AL F++ +
Sbjct: 250 MIGSKNWR-QVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIR 308
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARGLDI + VIN+ P YVHRVGRT RA +G A++ V+ ++ LL
Sbjct: 309 VLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLL 368
Query: 356 KAIAKRAGSKLKSRIV 371
+ I K SK+ ++
Sbjct: 369 RDIEKLLQSKMPQEVI 384
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 576 (207.8 bits), Expect = 6.1e-58, Sum P(2) = 6.1e-58
Identities = 134/374 (35%), Positives = 207/374 (55%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L LL A + G+++PT IQAA IP AL GRD+ GSA TG+GKTAA+ LP L+ LL
Sbjct: 8 ELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLL 67
Query: 62 YRP-KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
P K+ R+LILTPTRELA+QV ++A+ T + + GG++
Sbjct: 68 DFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQ 127
Query: 121 DIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTML 180
DIVVAT GR++ +++ + R+L++GF+ +I + R+QT+L
Sbjct: 128 DIVVATTGRLLQYIKEE-NFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLL 186
Query: 181 FSATLTED-VDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCS 239
FSATL D + + + L P+ +SA+PS + + ++ A+L+ L
Sbjct: 187 FSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKI--HQWYYRADDLEHKTALLVHLLK 244
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+ ++ I+F ++ H L A + L G + Q +R EA++ + V+ L+A
Sbjct: 245 QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 304
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVAARG+DI V V N+ PR +Y+HR+GRTARAGR+G A++ V +D LL +
Sbjct: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364
Query: 360 KRAGSKLKSRIVAE 373
+ +K+R++ E
Sbjct: 365 RYIEEPIKARVIDE 378
Score = 37 (18.1 bits), Expect = 6.1e-58, Sum P(2) = 6.1e-58
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 418 AHKEEIFARPKRTWFVTEKEKKLAVKADKASIEK 451
A E+ +P + EKK A + +K ++K
Sbjct: 385 APSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKK 418
>RGD|1311124 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1311124 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 IPI:IPI00362462 PRIDE:E9PTF0
Ensembl:ENSRNOT00000004891 UCSC:RGD:1311124 Uniprot:E9PTF0
Length = 480
Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
Identities = 149/383 (38%), Positives = 202/383 (52%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL LS L+ C LG +PTP+Q CIP L GRD G A TGSGKTAAF LP L++L
Sbjct: 6 ELRLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLS 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P I L+LTPTRELA Q+ + + ++ C++VGG+ Q L P
Sbjct: 66 EDPY---GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSRKPH 122
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELG---FSAEIHELVRLCPKRRQT 178
+V+ATPGR+ DHLR+S + RLLE G F+A++ ++ P RRQT
Sbjct: 123 VVIATPGRLADHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETILSAVPARRQT 182
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 238
+LFSATLT+ + EL L+ +P A + + T+ ++A L+ L
Sbjct: 183 LLFSATLTDTLKELQGLATNQPFFWEAQATVR---TVEQLDQRYLLVPEKVKDAYLVHLV 239
Query: 239 SKTFTSK-----VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 293
+TF + +IIF+ T + L ++ LH + Q +R AL F+
Sbjct: 240 -QTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALARFKSST 298
Query: 294 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 353
LIATDVA+RGLDI VQ VIN+ P Y+HRVGRTARAGR+G A+T VT D
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358
Query: 354 LLKAIAKRAGSKLKSRIVAEQSI 376
LL AI + +L V E +
Sbjct: 359 LLHAIEEEIKQQLAELAVEEAQV 381
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 135/393 (34%), Positives = 211/393 (53%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ NLS L++A +G+ + TPIQA IPL L+ +D+ G A TG+GKTAAF +P +E++
Sbjct: 7 DFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKI- 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ P I+ +++ PTRELA+QV + KI Q + + GG Q AL+ P+
Sbjct: 66 -NPES-PNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPN 123
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+V TPGR++DH+ N + +L +GF +I ++ P QT+LF
Sbjct: 124 IIVGTPGRLLDHI-NRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLF 182
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+ + + + +T+P + S + + LL + S
Sbjct: 183 SATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPE 242
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
I+F TK+ L L A +HG+LTQA+R+ AL F++ ++ L+ATD
Sbjct: 243 LA---IVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATD 299
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI--- 358
VAARGLDI GV V N+ P+D SYVHR+GRT RAG+ G A+TF+T ++S+L+AI
Sbjct: 300 VAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQT 359
Query: 359 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVA 391
KR ++K + E + +E++ ++
Sbjct: 360 TKRKMDRMKEPTLDEALEGQQQVTVERLRTTIS 392
>MGI|MGI:2136689 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2136689 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 HOVERGEN:HBG100512 CTD:54555
OrthoDB:EOG4C87SC EMBL:BC099554 IPI:IPI00354271
RefSeq:NP_001020093.2 UniGene:Mm.388127 UniGene:Mm.440659
ProteinModelPortal:Q4FZF3 SMR:Q4FZF3 PhosphoSite:Q4FZF3
PRIDE:Q4FZF3 Ensembl:ENSMUST00000008004 GeneID:234374
KEGG:mmu:234374 UCSC:uc009lzu.1 InParanoid:Q4FZF3 NextBio:382139
Bgee:Q4FZF3 CleanEx:MM_DDX49 Genevestigator:Q4FZF3
GermOnline:ENSMUSG00000057788 Uniprot:Q4FZF3
Length = 480
Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
Identities = 147/383 (38%), Positives = 203/383 (53%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E+ LS L+ C LG +PTP+Q CIP L GRD G A TGSGKTAAF LP L++L
Sbjct: 6 EIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLS 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P I L+LTPTRELA Q+ + + ++ C++VGG+ Q L P
Sbjct: 66 EDPY---GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPH 122
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELG---FSAEIHELVRLCPKRRQT 178
+V+ATPGR+ DHLR+S + RLLE G F+ ++ ++ P RRQT
Sbjct: 123 VVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVPARRQT 182
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 238
+LFSATLT+ + EL L+ +P A + + T+ ++A L+ L
Sbjct: 183 LLFSATLTDTLKELQGLATNEPFFWEAQATVR---TVEQLDQRYLLVPEKVKDAYLVHLV 239
Query: 239 SKTFTSK-----VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 293
+TF + +IIF+ T + L ++ LH + Q +R AL F+
Sbjct: 240 -QTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSI 298
Query: 294 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 353
LIATDVA+RGLDI VQ VIN+ P Y+HRVGRTARAGR+G A+T VT D
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358
Query: 354 LLKAIAKRAGSKLKSRIVAEQSI 376
LL AI ++ +L +V E +
Sbjct: 359 LLHAIEEQIKQQLAELVVEEAEV 381
>UNIPROTKB|Q9Y6V7 [details] [associations]
symbol:DDX49 "Probable ATP-dependent RNA helicase DDX49"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC002985 KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
HOVERGEN:HBG100512 EMBL:AK223294 EMBL:BC002674 IPI:IPI00003739
RefSeq:NP_061943.2 UniGene:Hs.143187 ProteinModelPortal:Q9Y6V7
SMR:Q9Y6V7 IntAct:Q9Y6V7 STRING:Q9Y6V7 PhosphoSite:Q9Y6V7
DMDM:74753527 PaxDb:Q9Y6V7 PRIDE:Q9Y6V7 DNASU:54555
Ensembl:ENST00000247003 GeneID:54555 KEGG:hsa:54555 UCSC:uc002nkq.2
CTD:54555 GeneCards:GC19P019030 HGNC:HGNC:18684 neXtProt:NX_Q9Y6V7
PharmGKB:PA134956171 InParanoid:Q9Y6V7 OrthoDB:EOG4C87SC
PhylomeDB:Q9Y6V7 GenomeRNAi:54555 NextBio:57032 ArrayExpress:Q9Y6V7
Bgee:Q9Y6V7 CleanEx:HS_DDX49 Genevestigator:Q9Y6V7
GermOnline:ENSG00000105671 Uniprot:Q9Y6V7
Length = 483
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 148/383 (38%), Positives = 202/383 (52%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL LS L+ C LG +PTP+Q CIP L GRD G A TGSGKTAAF LP L++L
Sbjct: 6 ELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLS 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P I L+LTPTRELA Q+ + + ++ C++VGG+ Q L P
Sbjct: 66 EDPY---GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPH 122
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELG---FSAEIHELVRLCPKRRQT 178
+V+ATPGR+ DHLR+S + RLLE G F+ ++ ++ P RRQT
Sbjct: 123 VVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQT 182
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 238
+LFSATLT+ + EL L+ +P A ST+ ++A L+ L
Sbjct: 183 LLFSATLTDTLRELQGLATNQPFFWEAQAPV---STVEQLDQRYLLVPEKVKDAYLVHLI 239
Query: 239 SKTFTSK-----VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 293
+ F + +IIF+ T + L ++ + LH + Q +R AL F+
Sbjct: 240 QR-FQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSI 298
Query: 294 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 353
LIATDVA+RGLDI VQ VIN+ P Y+HRVGRTARAGR+G A+T VT D
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358
Query: 354 LLKAIAKRAGSKLKSRIVAEQSI 376
L+ AI ++ KL+ V E +
Sbjct: 359 LVHAIEEQIKKKLEEFSVEEAEV 381
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 137/369 (37%), Positives = 201/369 (54%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A E GY+ P+PIQ IP L G+D+ +A TG+GKTA F LP LE L
Sbjct: 6 LGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAK 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
PK R +R LILTPTRELA Q+ + + ++ +V GG+ Q + D
Sbjct: 66 GPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGAD 125
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++D L N + R+L++GF +IH++++L P++RQ +LF
Sbjct: 126 ILVATPGRLMD-LYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNLLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT + ++ EL K + P+ +S P+ ST + +L+ L +
Sbjct: 185 SATFSTEIRELAKGLVNNPVEISVSPAN---STARTVEQCIYPADVKKKPDMLVKLVKEG 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++F TK A+RL L AA +HGN +Q R AL F+ V L+ATD
Sbjct: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARG+DI + V+N+ P+ YVHR+GRT RAG G A++ V+ + L AI +R
Sbjct: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAI-ER 360
Query: 362 AGSKLKSRI 370
L R+
Sbjct: 361 LTQALLPRV 369
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 137/369 (37%), Positives = 201/369 (54%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A E GY+ P+PIQ IP L G+D+ +A TG+GKTA F LP LE L
Sbjct: 6 LGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAK 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
PK R +R LILTPTRELA Q+ + + ++ +V GG+ Q + D
Sbjct: 66 GPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGAD 125
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++D L N + R+L++GF +IH++++L P++RQ +LF
Sbjct: 126 ILVATPGRLMD-LYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNLLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT + ++ EL K + P+ +S P+ ST + +L+ L +
Sbjct: 185 SATFSTEIRELAKGLVNNPVEISVSPAN---STARTVEQCIYPADVKKKPDMLVKLVKEG 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++F TK A+RL L AA +HGN +Q R AL F+ V L+ATD
Sbjct: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARG+DI + V+N+ P+ YVHR+GRT RAG G A++ V+ + L AI +R
Sbjct: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAI-ER 360
Query: 362 AGSKLKSRI 370
L R+
Sbjct: 361 LTQALLPRV 369
>UNIPROTKB|F1S7D9 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
Length = 483
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 147/383 (38%), Positives = 201/383 (52%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL LS L+ C LG +PTP+Q CIP L GRD G A TGSGKTAAF LP L++L
Sbjct: 6 ELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLS 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P I L+LTPTRELA Q+ + + ++ C++VGG+ Q L P
Sbjct: 66 EDPY---GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPH 122
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELG---FSAEIHELVRLCPKRRQT 178
+V+ATPGR+ DHLR+S + RLLE G F+ ++ ++ P RRQT
Sbjct: 123 VVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQT 182
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 238
+LFSATLT+ + EL L+ +P A + T+ ++A L+ L
Sbjct: 183 LLFSATLTDTLRELQSLATNQPFFWEAQAPVR---TVEQLDQRYLLVPEKVKDAYLVHLI 239
Query: 239 SKTFTSK-----VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 293
+ F + +IIF+ T + L ++ LH + Q +R AL F+
Sbjct: 240 -QNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSI 298
Query: 294 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 353
LIATDVA+RGLDI VQ VIN+ P Y+HRVGRTARAGR+G A+T VT D
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358
Query: 354 LLKAIAKRAGSKLKSRIVAEQSI 376
L+ AI ++ KL+ V E +
Sbjct: 359 LVHAIEEQIKKKLEEFSVEEAEV 381
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 147/435 (33%), Positives = 222/435 (51%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRI- 67
+LRA GY K TPIQ IP G+D+ SA TG+GKTAAFALP L++++ P
Sbjct: 12 ILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMVENPSETL 71
Query: 68 -PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVAT 126
RVLILTPTRELA QV +E +++ + + GG+ + Q L+ DI+VAT
Sbjct: 72 KSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQKLKRGADIIVAT 131
Query: 127 PGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 186
PGR+++HL + + R+L++GFSA+I ++++ K+RQ +LFSAT +
Sbjct: 132 PGRLLEHL-TACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQNLLFSATFS 190
Query: 187 EDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKV 246
V +L + KP +SAD K+ +T + +L L K +V
Sbjct: 191 SAVKKLANEMMIKPQVISAD---KQNTTADTVSQVVYPVEQRRKRELLSELIGKKNWQQV 247
Query: 247 IIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 306
++F+ T+ AA L L + + +HG Q R AL F V L+AT+VAARG
Sbjct: 248 LVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLVATEVAARG 307
Query: 307 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 366
LDI ++ V+N+ P YVHR+GRT RAG+ G A++FV+ + L I K G K+
Sbjct: 308 LDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADIEKLIGQKI 367
Query: 367 KSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHKEEIFAR 426
+ V + +++Q++ + +K + + +E MIA K R
Sbjct: 368 RRITVPGYEVGSRDLLLKQLQTR----------RSFAKKQQRQDNVSEQMIAEKSMQGRR 417
Query: 427 PK-RTWFVTEKEKKL 440
K + K KKL
Sbjct: 418 VKMKVGQAPSKAKKL 432
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 138/361 (38%), Positives = 198/361 (54%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL- 61
L+L+ L+ LGY +PTPIQ IP LT +D+ A TG+GKTAAFALP L+ L+
Sbjct: 6 LSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMA 65
Query: 62 --YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
AIR L+L PTRELA+QV K A+ TDIR + GG+S + Q+ +
Sbjct: 66 DNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAVFNAG 125
Query: 120 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTM 179
D+++ATPGR++DHLR + R+L++GF EI +++ P +RQT+
Sbjct: 126 IDVLIATPGRLLDHLRQG-ALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTL 184
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS--L 237
LFSATL + + K L P R+ AK P+T +++ +S +
Sbjct: 185 LFSATLDDSIFSFSKNLLRDPKRIEV---AK-PNTTAAQIEQRVYAIDSDRKTEFVSHLV 240
Query: 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
SK + +V+IFS TKQ +L + HG+L+Q R + L+ F++ V L
Sbjct: 241 RSKNW-QQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVL 299
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATDVAARGLDI +Q VIN+ P Y+HR+GRT RAG G A+T + D LL+
Sbjct: 300 VATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEE 359
Query: 358 I 358
+
Sbjct: 360 V 360
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 138/361 (38%), Positives = 198/361 (54%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL- 61
L+L+ L+ LGY +PTPIQ IP LT +D+ A TG+GKTAAFALP L+ L+
Sbjct: 6 LSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMA 65
Query: 62 --YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
AIR L+L PTRELA+QV K A+ TDIR + GG+S + Q+ +
Sbjct: 66 DNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAVFNAG 125
Query: 120 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTM 179
D+++ATPGR++DHLR + R+L++GF EI +++ P +RQT+
Sbjct: 126 IDVLIATPGRLLDHLRQG-ALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTL 184
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS--L 237
LFSATL + + K L P R+ AK P+T +++ +S +
Sbjct: 185 LFSATLDDSIFSFSKNLLRDPKRIEV---AK-PNTTAAQIEQRVYAIDSDRKTEFVSHLV 240
Query: 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
SK + +V+IFS TKQ +L + HG+L+Q R + L+ F++ V L
Sbjct: 241 RSKNW-QQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVL 299
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATDVAARGLDI +Q VIN+ P Y+HR+GRT RAG G A+T + D LL+
Sbjct: 300 VATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEE 359
Query: 358 I 358
+
Sbjct: 360 V 360
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 138/394 (35%), Positives = 213/394 (54%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L PLL+A LG+ PTPIQ IPL L G ++ G A TG+GKTAA+ LP L+R+
Sbjct: 6 KLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRI- 64
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
R K+ +VLI+TPTRELA+QV + K+ ++ +R V GG + + Q LR +
Sbjct: 65 QRGKKA---QVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVE 121
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
++V TPGR++DH+ + +L++GF +I ++ R+QT+LF
Sbjct: 122 VIVGTPGRILDHIGRK-TFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLF 180
Query: 182 SATLTEDVDELIKLSLT--KPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCS 239
SATL + +IK L K ++L R T+ + L+S+ +
Sbjct: 181 SATLPAPIKTIIKKFLGGYKTVKLVG-----REKTVPAIRQVYYELPETEKIEGLVSILN 235
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+ I+F TK+ + A LHG+++Q +R + ++ F+ + L+A
Sbjct: 236 SELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVA 295
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVAARGLDI V VIN+ P++ SY+HR+GRT RAGREG A+T + +R LLKAI
Sbjct: 296 TDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAIE 355
Query: 360 KRAGSKLKSRIVAEQ---SITKWSKIIEQMEDQV 390
+ +LK I+ E ++ KI +++ D +
Sbjct: 356 EAINKRLKREILPEPVDLEEARFKKIAKKILDTI 389
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 152/470 (32%), Positives = 242/470 (51%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL LS+ +++A E +G+ + TPIQA IPL+L +D+ G A TG+GKTAAF +P +E++
Sbjct: 6 ELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKVN 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ A++ L++ PTRELA+QV + KI +R + GG + Q AL+ P
Sbjct: 66 VKNS---AVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKHPH 122
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
++V TPGR+IDH+ N + +L +GF +I ++ P RQT+LF
Sbjct: 123 VIVGTPGRIIDHI-NRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLLF 181
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+ + + + + + +P + AK T+ + +L L
Sbjct: 182 SATMPDPIRRIAERFMNEPELVKV--KAKE-MTVPNIQQYYLEVHEKKKFDILTRLLDIQ 238
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
I+F TK+ L L A +HG+L+QA+RL L F++ ++ L+ATD
Sbjct: 239 APELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATD 298
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI--- 358
VAARGLDI GV V N+ P+D SYVHR+GRT RAG+ G A+TFVT + L I
Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERT 358
Query: 359 AKRAGSKLKSRIVAEQSITKWSKI-IEQMEDQVAAILQXXXXXXILRKAE--MEATKAEN 415
KR ++K + ++++ +I IE++ + +++ R AE +E +
Sbjct: 359 TKRKMERMKPPTL-DEALEGQQRIAIEKLLN----VVETENLSFYKRAAEELLEEHDSVT 413
Query: 416 MIAHKEEIFAR-PKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQ 464
++A ++ R P T +E LAVK +K + GS T ++
Sbjct: 414 IVAACLKMLTREPDTTPVQLTEEPPLAVKREKKRGGRPDGSARSRTKKRR 463
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 133/375 (35%), Positives = 200/375 (53%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ LS L +A + +G+ + TPIQA IPL L +D+ G A TG+GKTAAF +P +E++
Sbjct: 7 DFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKI- 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ P I+ +++ PTRELA+QV + KI Q R + GG Q AL+ P
Sbjct: 66 -NPES-PNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKKNPH 123
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+V TPGR++DH+ N + +L +GF +I ++ P QT+LF
Sbjct: 124 IIVGTPGRLLDHI-NRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLLF 182
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+ + + + +T P + S + + LL + S
Sbjct: 183 SATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLLDIQSPE 242
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
I+F TK+ L L A +HG+LTQA+R+ AL F++ ++ L+ATD
Sbjct: 243 LA---IVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATD 299
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI--- 358
VAARGLDI GV V N+ P+D SYVHR+GRT RAG+ G A+TF+T ++ +L+AI
Sbjct: 300 VAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQT 359
Query: 359 AKRAGSKLKSRIVAE 373
KR ++K+ + E
Sbjct: 360 TKRKMDRMKAPTLDE 374
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 138/394 (35%), Positives = 213/394 (54%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L PLL+A LG+ PTPIQ IPL L G ++ G A TG+GKTAA+ LP L+R+
Sbjct: 6 KLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRI- 64
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
R K+ +VLI+TPTRELA+QV + K+ ++ +R V GG + + Q LR +
Sbjct: 65 QRGKKA---QVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVE 121
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
++V TPGR++DH+ + +L++GF +I ++ R+QT+LF
Sbjct: 122 VIVGTPGRILDHIGRK-TFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLF 180
Query: 182 SATLTEDVDELIKLSLT--KPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCS 239
SATL + +IK L K ++L R T+ + L+S+ +
Sbjct: 181 SATLPAPIKTIIKKFLGGYKTVKLVG-----REKTVPAIRQVYYELPETEKIEGLVSILN 235
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+ I+F TK+ + A LHG+++Q +R + ++ F+ + L+A
Sbjct: 236 SELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVA 295
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVAARGLDI V VIN+ P++ SY+HR+GRT RAGREG A+T + +R LLKAI
Sbjct: 296 TDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAIE 355
Query: 360 KRAGSKLKSRIVAEQ---SITKWSKIIEQMEDQV 390
+ +LK I+ E ++ KI +++ D +
Sbjct: 356 EAINKRLKREILPEPVDLEEARFKKIAKKILDTI 389
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
Identities = 148/461 (32%), Positives = 234/461 (50%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL LS LL++ E++G+ + TPIQA IP AL G+DI G A TG+GKTAAF LP L+++
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + I ++ PTRELA+QV + KI + +R + GG Q AL+ P
Sbjct: 66 THKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPH 122
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+V TPGR++DH+ N + +L +GF +I ++ P+ QT+LF
Sbjct: 123 IIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLF 181
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+ + + + + +T+P + AK T+ + VL L
Sbjct: 182 SATMPDPIRRIAERFMTEPQHIKV--KAKEV-TMPNIQQFYLEVQEKKKFDVLTRLLDIQ 238
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
I+F TK+ L L A +HG+LTQA+R+ L F++ ++ L+ATD
Sbjct: 239 SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATD 298
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV V N+ P+D SYVHR+GRT RAG++G A+ FVT + LK I +
Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERT 358
Query: 362 AGSKLKSRIVA---EQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAE--MEATKAENM 416
K+ R+ A ++++ ++I + ++ + ++ R AE +E + +
Sbjct: 359 TKRKM-DRMDAPTLDEALEGQQRLIAE---KLQSTIENENLAYYKRIAEEMLEENDSVTV 414
Query: 417 IAHKEEIFAR-PKRTWFVTEKEKKLAVKADKASIEKGKGSG 456
+A ++ + P T E + + + G G G
Sbjct: 415 VAAALKMMTKEPDTTPIALTSEPPVVARGGGSKKRGGNGGG 455
>DICTYBASE|DDB_G0270396 [details] [associations]
symbol:ddx49 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
Length = 508
Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
Identities = 140/359 (38%), Positives = 193/359 (53%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L+ L+ C+ LG+ P+ IQA IP L GRDI SA TGSGKTA+FA+P L +L
Sbjct: 8 ELGLTTWLVANCKQLGFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPILNQLS 67
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P + A+ ILTPTRELAVQ+ I ++ C +V+GG+ Q L P
Sbjct: 68 EDPYGVFAV---ILTPTRELAVQIGEQFNAIGAPMNVNCSVVIGGIDNVTQALILDKRPH 124
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP--KRRQTM 179
I+VATPGR+ HL N + RLL F EI ++ P ++RQT+
Sbjct: 125 IIVATPGRLASHLNNGLKIALKFCKFLVLDEADRLLGEDFELEIASILEHLPPPEKRQTL 184
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCS 239
LFSAT+T+++ +L ++L KP + D S + T+ ++ L+ +
Sbjct: 185 LFSATMTKNLTKLDSIALNKPF-IFEDNS--KYDTVDTLKQEYIYMPAPTKDCYLVYILK 241
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
K S I+F A +K + + + LH L Q RL AL+ F+ V L+A
Sbjct: 242 KHEGSSAIVFVNNCYAVEAVKGMLNKLDIPSVSLHSFLDQKSRLAALKTFKSGKVKVLVA 301
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
TDVA+RGLDI VQ VINY Y+HRVGRTAR GR G A++F+T +D SL+K I
Sbjct: 302 TDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARFGRSGRAISFITPHDVSLIKGI 360
>ZFIN|ZDB-GENE-031030-3 [details] [associations]
symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
Length = 468
Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
Identities = 142/384 (36%), Positives = 205/384 (53%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS L++ C+ +G S+PT +Q CIP L GRD G A TGSGKTAAF LP L++L
Sbjct: 7 LGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVLQKLSE 66
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P + L+LTPTRELA Q+ + + ++ C++VGG+ Q L P +
Sbjct: 67 DPY---GVFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELSKKPHV 123
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELG---FSAEIHELVRLCPKRRQTM 179
VVATPGR+ DH+R+S + RLLE G F+ ++ ++ P +RQT+
Sbjct: 124 VVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQGCTDFTKDLEVILSAVPAKRQTL 183
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCS 239
LFSATLT+ + +L +++ +P + T+ ++A L+ L
Sbjct: 184 LFSATLTDTLQQLQSIAMNRPFFWEHKSDVQ---TVEELDQRFILTPEKVKDAYLVHLI- 239
Query: 240 KTFTSK-----VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 294
+TF + +IIF+ T ++ L ++ LH + Q QR L F+
Sbjct: 240 QTFQDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLAKFKSNVF 299
Query: 295 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 354
LIATDVAARGLDI VQ VIN+ P Y+HRVGRTARAGR G ++T VT D L
Sbjct: 300 KILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIHL 359
Query: 355 LKAIAKRAGSKLKSRIVAEQSITK 378
+ AI ++ +KLK + E+ + K
Sbjct: 360 INAIEEQNQTKLKEFPIEEKEVLK 383
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 134/365 (36%), Positives = 197/365 (53%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL LS LL++ E++G+ + TPIQA IP AL G+DI G A TG+GKTAAF LP L+++
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + I ++ PTRELA+QV + KI + +R + GG Q AL+ P
Sbjct: 66 THKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPH 122
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+V TPGR++DH+ N + +L +GF +I ++ P+ QT+LF
Sbjct: 123 IIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLF 181
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+ + + + + +T+P + AK T+ + VL L
Sbjct: 182 SATMPDPIRRIAERFMTEPQHIKV--KAKEV-TMPNIQQFYLEVQEKKKFDVLTRLLDIQ 238
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
I+F TK+ L L A +HG+LTQA+R+ L F++ ++ L+ATD
Sbjct: 239 SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATD 298
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV V N+ P+D SYVHR+GRT RAG++G A+ FVT + LK I +
Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERT 358
Query: 362 AGSKL 366
K+
Sbjct: 359 TKRKM 363
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 134/365 (36%), Positives = 197/365 (53%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL LS LL++ E++G+ + TPIQA IP AL G+DI G A TG+GKTAAF LP L+++
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + I ++ PTRELA+QV + KI + +R + GG Q AL+ P
Sbjct: 66 THKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPH 122
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+V TPGR++DH+ N + +L +GF +I ++ P+ QT+LF
Sbjct: 123 IIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLF 181
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+ + + + + +T+P + AK T+ + VL L
Sbjct: 182 SATMPDPIRRIAERFMTEPQHIKV--KAKEV-TMPNIQQFYLEVQEKKKFDVLTRLLDIQ 238
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
I+F TK+ L L A +HG+LTQA+R+ L F++ ++ L+ATD
Sbjct: 239 SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATD 298
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV V N+ P+D SYVHR+GRT RAG++G A+ FVT + LK I +
Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERT 358
Query: 362 AGSKL 366
K+
Sbjct: 359 TKRKM 363
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 134/365 (36%), Positives = 197/365 (53%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL LS LL++ E++G+ + TPIQA IP AL G+DI G A TG+GKTAAF LP L+++
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + I ++ PTRELA+QV + KI + +R + GG Q AL+ P
Sbjct: 66 THKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPH 122
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+V TPGR++DH+ N + +L +GF +I ++ P+ QT+LF
Sbjct: 123 IIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLF 181
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+ + + + + +T+P + AK T+ + VL L
Sbjct: 182 SATMPDPIRRIAERFMTEPQHIKV--KAKEV-TMPNIQQFYLEVQEKKKFDVLTRLLDIQ 238
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
I+F TK+ L L A +HG+LTQA+R+ L F++ ++ L+ATD
Sbjct: 239 SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATD 298
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV V N+ P+D SYVHR+GRT RAG++G A+ FVT + LK I +
Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERT 358
Query: 362 AGSKL 366
K+
Sbjct: 359 TKRKM 363
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 134/365 (36%), Positives = 197/365 (53%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL LS LL++ E++G+ + TPIQA IP AL G+DI G A TG+GKTAAF LP L+++
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + I ++ PTRELA+QV + KI + +R + GG Q AL+ P
Sbjct: 66 THKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPH 122
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+V TPGR++DH+ N + +L +GF +I ++ P+ QT+LF
Sbjct: 123 IIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLF 181
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+ + + + + +T+P + AK T+ + VL L
Sbjct: 182 SATMPDPIRRIAERFMTEPQHIKV--KAKEV-TMPNIQQFYLEVQEKKKFDVLTRLLDIQ 238
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
I+F TK+ L L A +HG+LTQA+R+ L F++ ++ L+ATD
Sbjct: 239 SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATD 298
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV V N+ P+D SYVHR+GRT RAG++G A+ FVT + LK I +
Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERT 358
Query: 362 AGSKL 366
K+
Sbjct: 359 TKRKM 363
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 134/365 (36%), Positives = 197/365 (53%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL LS LL++ E++G+ + TPIQA IP AL G+DI G A TG+GKTAAF LP L+++
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + I ++ PTRELA+QV + KI + +R + GG Q AL+ P
Sbjct: 66 THKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPH 122
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+V TPGR++DH+ N + +L +GF +I ++ P+ QT+LF
Sbjct: 123 IIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLF 181
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+ + + + + +T+P + AK T+ + VL L
Sbjct: 182 SATMPDPIRRIAERFMTEPQHIKV--KAKEV-TMPNIQQFYLEVQEKKKFDVLTRLLDIQ 238
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
I+F TK+ L L A +HG+LTQA+R+ L F++ ++ L+ATD
Sbjct: 239 SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATD 298
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV V N+ P+D SYVHR+GRT RAG++G A+ FVT + LK I +
Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERT 358
Query: 362 AGSKL 366
K+
Sbjct: 359 TKRKM 363
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 134/365 (36%), Positives = 197/365 (53%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL LS LL++ E++G+ + TPIQA IP AL G+DI G A TG+GKTAAF LP L+++
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + I ++ PTRELA+QV + KI + +R + GG Q AL+ P
Sbjct: 66 THKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPH 122
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+V TPGR++DH+ N + +L +GF +I ++ P+ QT+LF
Sbjct: 123 IIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLF 181
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+ + + + + +T+P + AK T+ + VL L
Sbjct: 182 SATMPDPIRRIAERFMTEPQHIKV--KAKEV-TMPNIQQFYLEVQEKKKFDVLTRLLDIQ 238
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
I+F TK+ L L A +HG+LTQA+R+ L F++ ++ L+ATD
Sbjct: 239 SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATD 298
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV V N+ P+D SYVHR+GRT RAG++G A+ FVT + LK I +
Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERT 358
Query: 362 AGSKL 366
K+
Sbjct: 359 TKRKM 363
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 135/357 (37%), Positives = 196/357 (54%)
Query: 15 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLI 74
A GY PTPIQA IP + GRD+ G A TG+GKTAAFALP L RL + +R +R L+
Sbjct: 18 AAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPILHRL-QQGER-GRVRALV 75
Query: 75 LTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHL 134
+ PTRELA Q++ + + T +R V GG+ Q L++ ++VVA PGR++DH+
Sbjct: 76 IAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKLKAGAEVVVACPGRLLDHI 135
Query: 135 RNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIK 194
+ ++ ++GF +I +++ P RRQT+LFSAT+ D+ L +
Sbjct: 136 AQG-TIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPRRQTLLFSATMPIDIRTLAQ 194
Query: 195 LSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQ 254
L P+ + A P+ + +LL L T T V+IF+ TK
Sbjct: 195 DILVDPVTVQVGTVA--PAVTVAHALYPVEQHL--KTPLLLELLRHTDTESVLIFTRTKH 250
Query: 255 AAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT 314
A RL A +AA L GNL+Q +R AL+ FR L+ATD+AARG+D+ V
Sbjct: 251 RAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILVATDIAARGIDVSQVSH 310
Query: 315 VINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIV 371
VINY P +Y+HR+GRT RA R G A T VT +D ++++AI + G+ ++ R V
Sbjct: 311 VINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDDGAMVRAIERSLGAPIERRTV 367
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
Identities = 147/406 (36%), Positives = 216/406 (53%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L P+L A LGY KP+PIQA CIP L GRD+ G A TGSGKTAAF+LP L+ L
Sbjct: 10 DLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNL- 68
Query: 62 YRPKRIPAIRVLILTPTRELAVQV-HSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
P+ + A ++L+L PTRELAVQV +M + + + GG +Q ALR P
Sbjct: 69 -DPE-LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126
Query: 121 DIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTML 180
IVV TPGR++DHL+ + +L +GF ++ ++ P+ QT L
Sbjct: 127 QIVVGTPGRLLDHLKRG-TLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAK-RPSTLTXXXXXXXXXXXXNQEAVLLSLCS 239
FSAT+ E + + + + +P + S RP EA++ L +
Sbjct: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDI---SQSYWTVWGMRKNEALVRFLEA 242
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+ F + IIF TK A + +A L+G++ QA R + LE + +D LIA
Sbjct: 243 EDFDA-AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVAARGLD+ + V+NY P D SYVHR+GRT RAGR G A+ FV + +R LL+ I
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361
Query: 360 KRAGSKL------KSRIVAEQSITKWS-KIIEQME----DQVAAIL 394
+ + + ++ ++ + K++ K+ +Q+E DQ A+L
Sbjct: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALL 407
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 141/365 (38%), Positives = 194/365 (53%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS PLL A GY + T +Q IPLAL G+DI A TG+GKTAAFALP LE+L
Sbjct: 6 LGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQLAA 65
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+P P +R L++TPTRELA+QV + I+K +QF ++ V GG + Q + DI
Sbjct: 66 KPADKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVEQGVDI 125
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+VATPGR+ D + + R+L+LGF +I ++ RL QTMLFS
Sbjct: 126 LVATPGRLFDII-GQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQTMLFS 184
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS-LCSKT 241
AT ++ V +L L +P ++ +T ++A LLS L +
Sbjct: 185 ATYSDAVKQLSHKMLNQPQWVNV-----AENTTASTVEQLVYRVDKRRKAELLSELVGRN 239
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++F+ TK+ A L L + A HG+ TQ R L+ F+ + L+ATD
Sbjct: 240 NWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVATD 299
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI + VIN P YVHR+GRT RAG G A++FV+ D +L I
Sbjct: 300 VAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIEAL 359
Query: 362 AGSKL 366
G KL
Sbjct: 360 IGEKL 364
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 141/365 (38%), Positives = 194/365 (53%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS PLL A GY + T +Q IPLAL G+DI A TG+GKTAAFALP LE+L
Sbjct: 6 LGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQLAA 65
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+P P +R L++TPTRELA+QV + I+K +QF ++ V GG + Q + DI
Sbjct: 66 KPADKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVEQGVDI 125
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+VATPGR+ D + + R+L+LGF +I ++ RL QTMLFS
Sbjct: 126 LVATPGRLFDII-GQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQTMLFS 184
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS-LCSKT 241
AT ++ V +L L +P ++ +T ++A LLS L +
Sbjct: 185 ATYSDAVKQLSHKMLNQPQWVNV-----AENTTASTVEQLVYRVDKRRKAELLSELVGRN 239
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++F+ TK+ A L L + A HG+ TQ R L+ F+ + L+ATD
Sbjct: 240 NWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVATD 299
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI + VIN P YVHR+GRT RAG G A++FV+ D +L I
Sbjct: 300 VAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIEAL 359
Query: 362 AGSKL 366
G KL
Sbjct: 360 IGEKL 364
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
Identities = 132/374 (35%), Positives = 198/374 (52%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L + ++ AC LG++KP IQ IP AL GRDI G A TGSGKTAAF +P L++LL
Sbjct: 124 LGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVLQKLLE 183
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P+ + L L PTRELA Q+ I ++ C++VGG+ + Q AL P +
Sbjct: 184 APQ---GLFCLALAPTRELAYQIADQFNAIGSTIGVKTCVLVGGIDSMSQSLALAKKPHV 240
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFS 182
VV +PGR++ HL ++ RL F E++ ++++ PK R T LFS
Sbjct: 241 VVGSPGRVLHHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEVNNILKVIPKERNTYLFS 300
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTF 242
AT+T V +L + SL P+++ A + T+ ++ L + ++
Sbjct: 301 ATMTSKVAKLQRASLVNPVKVQV---ASKYQTVDTLLQQYLFVPFKYKDCYLAYILNELA 357
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+ IIF+ T ++ ++ ++ A ++G++ Q +RL +L F++ L+ATDV
Sbjct: 358 GNLTIIFTSTCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFKQGTKSILVATDV 417
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
AARGLDI V VINY P + YVHRVGRTARAG G A+T VT D + + I
Sbjct: 418 AARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQYDVEMYQRIEFVL 477
Query: 363 GSKLKSRIVAEQSI 376
KL S E+++
Sbjct: 478 KKKLDSFPCQEETV 491
>TIGR_CMR|CPS_4097 [details] [associations]
symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
Uniprot:Q47WS0
Length = 430
Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
Identities = 134/387 (34%), Positives = 211/387 (54%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ +L LL + +GY+KPT IQ IP A+ G+D+ SA TG+GKTAAF LP + LL
Sbjct: 17 QFDLDSELLASINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQHLL 76
Query: 62 YRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
P+ P RVLILTPTRELA+Q+ E++ + T I+ ++ GG++ L S
Sbjct: 77 DYPRTKPGFPRVLILTPTRELAIQIGEDSEQLTELTKIKTGVITGGVNYGSHADILTSTT 136
Query: 121 DIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTML 180
DI+VATPGR+++++ N R+L+LGFS I+ +V R+QTML
Sbjct: 137 DILVATPGRLLEYIENEQ-FDAREIEILVLDEADRMLDLGFSETINRIVAEARWRKQTML 195
Query: 181 FSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCS 239
FSATL + V + L +P+ L + PS K + + ++ +L++
Sbjct: 196 FSATLESPGVQLFAEEVLNEPVFLESKPSRKEKAVI--HQWLHLADDANHKLNLLVNTLK 253
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+ + ++F+ ++ L L L G + Q +R +A+E F+K V L+A
Sbjct: 254 QEGVERTVVFANKRETVQYLSGKLYAEELPCVWLEGKMPQDKRNKAIERFKKGEVKVLVA 313
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVAARGLDI + VIN+ PR + Y+HR+GRT RAG++G A++ V +D ++ I
Sbjct: 314 TDVAARGLDIDDISHVINFDMPRKVDIYIHRIGRTGRAGKKGTAISLVEAHDMGVIGKIE 373
Query: 360 KRAGSKLKSRIVAE-QSITKWSKIIEQ 385
+ +L R + E + K S+++ +
Sbjct: 374 RYTKERLSRRFIQELRPKNKESRVVNK 400
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 543 (196.2 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 128/363 (35%), Positives = 196/363 (53%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L L++A LGY PTPIQ IP L G+++ +A TG+GKTA+F LP L R
Sbjct: 5 QLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHRFA 64
Query: 62 YRPKRIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
PK P +R +ILTPTRELA+QV I + A++ + + GG+ Q+ L
Sbjct: 65 DAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKRLIEGV 124
Query: 121 DIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTML 180
D++VATPGR++D + + R+L++GF +I+ ++ P++RQ +L
Sbjct: 125 DLLVATPGRLLD-MYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQNLL 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSK 240
FSATL++ V L K ++ P + + S K ++ T + A+L L +
Sbjct: 184 FSATLSKQVKALAKTAI--PDAIEIEISRKNAAS-TQIDQWLTTVDKDRKSALLSHLIKE 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
++ +IF TK A +L + A H +QA R + L F+ V FL+AT
Sbjct: 241 NNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
V +RG+DI ++ VINY P + Y+HR+GRT RAG +G A++FV+ +D L AI +
Sbjct: 301 GVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAIER 360
Query: 361 RAG 363
R G
Sbjct: 361 RLG 363
Score = 46 (21.3 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 553 KHSSQESNSRAKEMRELFHSDMSEKKQ-KRTGGIGKKPKHSFKSKSRYK 600
KH S ++ ++K++ L ++E+ + +RT G +P + + S + K
Sbjct: 427 KHRSAKAKPQSKQVARLTPPPVNERSEAQRTQGETSQPFNPWHSGPKTK 475
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 543 (196.2 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 128/363 (35%), Positives = 196/363 (53%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L L++A LGY PTPIQ IP L G+++ +A TG+GKTA+F LP L R
Sbjct: 5 QLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHRFA 64
Query: 62 YRPKRIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
PK P +R +ILTPTRELA+QV I + A++ + + GG+ Q+ L
Sbjct: 65 DAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKRLIEGV 124
Query: 121 DIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTML 180
D++VATPGR++D + + R+L++GF +I+ ++ P++RQ +L
Sbjct: 125 DLLVATPGRLLD-MYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQNLL 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSK 240
FSATL++ V L K ++ P + + S K ++ T + A+L L +
Sbjct: 184 FSATLSKQVKALAKTAI--PDAIEIEISRKNAAS-TQIDQWLTTVDKDRKSALLSHLIKE 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
++ +IF TK A +L + A H +QA R + L F+ V FL+AT
Sbjct: 241 NNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
V +RG+DI ++ VINY P + Y+HR+GRT RAG +G A++FV+ +D L AI +
Sbjct: 301 GVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAIER 360
Query: 361 RAG 363
R G
Sbjct: 361 RLG 363
Score = 46 (21.3 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 553 KHSSQESNSRAKEMRELFHSDMSEKKQ-KRTGGIGKKPKHSFKSKSRYK 600
KH S ++ ++K++ L ++E+ + +RT G +P + + S + K
Sbjct: 427 KHRSAKAKPQSKQVARLTPPPVNERSEAQRTQGETSQPFNPWHSGPKTK 475
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 136/380 (35%), Positives = 203/380 (53%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+EL +S G ++ TPIQ IP+ L+G+DI G A TG+GKT AF LP LE++
Sbjct: 8 LELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKI 67
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEK-IAQFTDIRCCLVVGGLSTKMQETALRSM 119
P+ ++ LI+ PTRELA+Q+ + I+K + Q DI + GG Q L+
Sbjct: 68 --DPESSD-VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124
Query: 120 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTM 179
IVVATPGR++DH+R + ++L GF +I +++ P +QTM
Sbjct: 125 THIVVATPGRLLDHIRRE-TIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTM 183
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCS 239
LFSAT+ +D+ +L K + +P + T+ + ++
Sbjct: 184 LFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDR-D 242
Query: 240 KTFTSKVIIFSGTKQAAHRL-KILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+ F + +IF TK A +L L GL AELHG++ QA+R ++ FR+ + +LI
Sbjct: 243 QPFLA--VIFCRTKVRASKLYDNLKGLG-YNCAELHGDIPQAKRERVMKSFREAKIQYLI 299
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATDVAARGLD+ GV V NY P D+ SY+HR+GRT RAG G A+TFV D L+ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359
Query: 359 AKRAGSKLKSRIVAEQSITK 378
K G+ ++ I+ + I +
Sbjct: 360 EKTLGAPIQREIIEQPKIKR 379
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 136/380 (35%), Positives = 203/380 (53%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+EL +S G ++ TPIQ IP+ L+G+DI G A TG+GKT AF LP LE++
Sbjct: 8 LELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKI 67
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEK-IAQFTDIRCCLVVGGLSTKMQETALRSM 119
P+ ++ LI+ PTRELA+Q+ + I+K + Q DI + GG Q L+
Sbjct: 68 --DPESSD-VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124
Query: 120 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTM 179
IVVATPGR++DH+R + ++L GF +I +++ P +QTM
Sbjct: 125 THIVVATPGRLLDHIRRE-TIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTM 183
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCS 239
LFSAT+ +D+ +L K + +P + T+ + ++
Sbjct: 184 LFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDR-D 242
Query: 240 KTFTSKVIIFSGTKQAAHRL-KILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+ F + +IF TK A +L L GL AELHG++ QA+R ++ FR+ + +LI
Sbjct: 243 QPFLA--VIFCRTKVRASKLYDNLKGLG-YNCAELHGDIPQAKRERVMKSFREAKIQYLI 299
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATDVAARGLD+ GV V NY P D+ SY+HR+GRT RAG G A+TFV D L+ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359
Query: 359 AKRAGSKLKSRIVAEQSITK 378
K G+ ++ I+ + I +
Sbjct: 360 EKTLGAPIQREIIEQPKIKR 379
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 136/389 (34%), Positives = 206/389 (52%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL LS LLRA + LGY KPTPIQ+A I + G+DI G A TG+GKT AFALP L ++
Sbjct: 10 ELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVT 69
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMP 120
+ P ++L+L PTRELAVQV A+F + + GG S + Q AL+ P
Sbjct: 70 --SQTTP--QILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKRGP 125
Query: 121 DIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTML 180
++V TPGR++DH+R + +L++GF +I ++ P +RQ L
Sbjct: 126 QVIVGTPGRVMDHMRRG-TLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPPQRQLAL 184
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSK 240
FSAT+ E + + L +S A +T+ N+ L+ +
Sbjct: 185 FSATMPEQIKRVANKHLKNATNISI---AASHTTVDSIEQRFVQVSQHNKLEALVRVLEV 241
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
T +IIF T+ + L ++ LHG++ Q R A+E + +D LIAT
Sbjct: 242 ENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIAT 301
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ + V+NY P D +YVHR+GRT RAGR G A+ FVT + +L+ I +
Sbjct: 302 DVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIER 361
Query: 361 RAGSKLKS-RIVAEQSIT--KWSKIIEQM 386
S++ ++ + +++ + S++ EQ+
Sbjct: 362 ATNSRISPMKVPSPETVAERRLSRLGEQL 390
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 138/374 (36%), Positives = 196/374 (52%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS L+RA EA GY++PTP+Q IP L GRD+ +A TG+GKT FALP LERL
Sbjct: 6 LGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLF- 64
Query: 63 RPKRIP---------AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 113
P +P RVL+LTPTRELA QVH + A+ + GG+ Q
Sbjct: 65 -PNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQV 123
Query: 114 TALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP 173
A+ D++VA PGR++D L S R+L++GF ++ +++ P
Sbjct: 124 QAMSRGVDVLVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLP 182
Query: 174 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAV 233
+RQ +LFSAT + D+ L L P R+ P P+T N +
Sbjct: 183 AKRQNLLFSATFSNDITSLAGKLLHNPERIEVTP----PNTTVERIEQRVFRLAANHKRS 238
Query: 234 LLS-LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 292
LL+ L + +V++F+ TK A+RL L A +HGN +Q R +AL F+
Sbjct: 239 LLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAG 298
Query: 293 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 352
V ++ATD+AARGLDI + V+N+ P YVHR+GRT RAGR G A++ V ++
Sbjct: 299 DVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEE 358
Query: 353 SLLKAIAKRAGSKL 366
LLK+I + K+
Sbjct: 359 KLLKSIERMTKQKI 372
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 545 (196.9 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
Identities = 131/365 (35%), Positives = 183/365 (50%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNL+ +L+A E GY PTPIQA IP AL GRD+ G A TG+GKTA+F LP + L
Sbjct: 6 ELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITLLA 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
R R L+L PTRELA QV + + + L++GG+S K Q+ + D
Sbjct: 66 RGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDRGVD 125
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR++DH R+L++GF +I + L P RQT+ F
Sbjct: 126 VLIATPGRLLDHFERG-KLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTL----TXXXXXXXXXXXXNQEAVLLSL 237
SAT+ +++ + L+ P R+ A T+ + AVL +L
Sbjct: 185 SATMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRDREASEKRAVLRAL 244
Query: 238 CSKTFT--SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
+ IIF K + AA +HG+L Q+QR L+ FR+ +
Sbjct: 245 IDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTRTLDGFREGKLR 304
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+A+DVAARGLD+ V V N+ P YVHR+GRT RAGR+G A+T D L
Sbjct: 305 LLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAITLCIPRDEKAL 364
Query: 356 KAIAK 360
AI K
Sbjct: 365 DAIEK 369
Score = 38 (18.4 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 499 DEDQVDKLQGSGKDKKEKAGISMVDL 524
+ D+ D+ G +D+K+ G +V +
Sbjct: 428 EADKRDRKGGERRDRKDDRGARVVGM 453
>POMBASE|SPAC31A2.07c [details] [associations]
symbol:dbp10 "ATP-dependent RNA helicase Dbp10
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC31A2.07c
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OrthoDB:EOG4JWZP1
EMBL:AB027882 PIR:S59645 RefSeq:NP_592919.1
ProteinModelPortal:Q09719 STRING:Q09719 EnsemblFungi:SPAC31A2.07c.1
GeneID:2543197 KEGG:spo:SPAC31A2.07c OMA:FYIPYRP NextBio:20804220
Uniprot:Q09719
Length = 848
Score = 382 (139.5 bits), Expect = 9.4e-55, Sum P(3) = 9.4e-55
Identities = 91/235 (38%), Positives = 127/235 (54%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+ L++ LLRA G+ PTPIQ IPL L GRD+ G A TGSGKTAAF +P +E L
Sbjct: 74 MGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKS 133
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
R LIL+P RELA+Q +++ ++ TD+R +VGG+S + Q + L PDI
Sbjct: 134 TLANSNT-RALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDI 192
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFS 182
VVATPGR + HL+ M RL E+GF+A++ E++ P RQT+LFS
Sbjct: 193 VVATPGRFL-HLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFS 251
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 237
ATL + + K L P+ + D +K + L +EA LL +
Sbjct: 252 ATLPRTLVDFAKAGLQDPVLVRLDVESKVSADLQSAFFSVKTA---EREAALLCI 303
Score = 205 (77.2 bits), Expect = 9.4e-55, Sum P(3) = 9.4e-55
Identities = 64/215 (29%), Positives = 100/215 (46%)
Query: 247 IIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 306
++F TK + L A ++++G+L Q RL + FR + L+ TDVA+RG
Sbjct: 350 LVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRG 409
Query: 307 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 366
+DI + VINY P +VHRVGRTARAGR G+A + V D L + L
Sbjct: 410 IDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAEDAGYLLDLQLFLNRPL 469
Query: 367 --KSRIVAEQSITKWSK--IIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHKEE 422
S+ V S ++K ++ + ++ A L + R E++ + N+ A E+
Sbjct: 470 VTSSKQVKTDSDCDFTKQIVLGSLPQELVAELLEWVQRIVSRDVELQ--QLSNVAARGEK 527
Query: 423 IFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGN 457
++ R + T E K+ D KG S N
Sbjct: 528 LYFRTRATCSA-ESAKRAKELVDS----KGWSSNN 557
Score = 61 (26.5 bits), Expect = 9.4e-55, Sum P(3) = 9.4e-55
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 545 VKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHSFKS 595
++ N K+ KH+ ++ A + R+ +H ++ + GIG K KS
Sbjct: 773 IREN-KRYKHNKLQTPKPADKFRDNYHKQNKRNREAKERGIGIKVNSELKS 822
Score = 52 (23.4 bits), Expect = 8.2e-54, Sum P(3) = 8.2e-54
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 545 VKSNGKKSKHSSQE-SNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHSFKSKSRY 599
VK G KS+ +S + ++S M E S++ E+ K + KK FK K Y
Sbjct: 612 VKPKGIKSEVASDKITDSSPGNMSEASESEL-EEVFKNPKELSKKKTTDFKDKEYY 666
Score = 49 (22.3 bits), Expect = 1.7e-53, Sum P(3) = 1.7e-53
Identities = 13/58 (22%), Positives = 26/58 (44%)
Query: 540 DAGKIVKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHSFKSKS 597
+A +I++ K K +S + ++ + +MSE + + K PK K K+
Sbjct: 600 EAAEIMRKRRNKVKPKGIKSEVASDKITDSSPGNMSEASESELEEVFKNPKELSKKKT 657
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
Identities = 137/363 (37%), Positives = 199/363 (54%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS +LRA GY +PTPIQ IP L GRD+ SA TG+GKTA F LP L+ L+
Sbjct: 6 LGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLIT 65
Query: 63 R-PK---RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
R P R P +R LILTPTRELA Q+ + +++ +IR +V GG+S Q LR
Sbjct: 66 RQPHAKGRRP-VRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRG 124
Query: 119 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 178
D++VATPGR++D L + + R+L++GF +I ++ P +RQ
Sbjct: 125 GVDVLVATPGRLLD-LEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQN 183
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS-L 237
+LFSAT ++D+ L + L PL + A+R +T + ++ LLS +
Sbjct: 184 LLFSATFSDDIKALAEKLLHNPLEIEV---ARR-NTASDQVTQHVHFVDKKRKRELLSHM 239
Query: 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
K +V++F+ TK A+ L +++A +HGN +Q R AL F+ + L
Sbjct: 240 IGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATD+AARGLDI + V+NY P YVHR+GRT RA G A++ V ++ LL+
Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359
Query: 358 IAK 360
I K
Sbjct: 360 IEK 362
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
Identities = 144/385 (37%), Positives = 212/385 (55%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL-- 60
L LS P+L A LGY+KPT IQ IP+ L G+DI +A TG+GKTA+F LP LE+L
Sbjct: 6 LKLSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLEQLNS 65
Query: 61 LYRP--KRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 116
Y+ K++ A IR LIL PTRELAVQV + I + A++ DI + GG+ + Q+ L
Sbjct: 66 QYKETGKKLRAKRIRALILVPTRELAVQVEASISQYAKYLDISSMAMYGGVDAQEQKQRL 125
Query: 117 RSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRR 176
DI+VATPGR++D + + R+L++GF +I++++ P+ R
Sbjct: 126 IWGVDILVATPGRLLD-MTHQRVLHFDELDMLVLDEADRMLDMGFIDDINKIIERLPEHR 184
Query: 177 QTMLFSATLTEDVDELIKLSLTKPLRLS--ADPSAKRPSTLTXXXXXXXXXXXXNQEAVL 234
Q +LFSAT++E+V L K ++ KP+ +S AD ++K P N+ A+L
Sbjct: 185 QNLLFSATMSEEVRGLAKRTIHKPVEISIGADKASK-PKI----EQWLVTVDKANKSALL 239
Query: 235 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 294
+ + + +IF TK A +L + A +H Q R + L F+ +
Sbjct: 240 SHIITTQNWQQALIFIETKHGAAKLVSQLEKRGIVAESIHSGRAQDIREKILNDFKSGKI 299
Query: 295 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT-DNDRS 353
FL+AT +AARGLDI + VINY P + Y+HR+GRT RAG G A++ V+ DN R
Sbjct: 300 KFLVATAIAARGLDIGELSRVINYDLPAQVDDYIHRIGRTGRAGASGEAISLVSKDNFRE 359
Query: 354 LLKAIAKRAGSKLKSRIVAEQSITK 378
L AI R G ++ + E + K
Sbjct: 360 LC-AIESRLGHIIERKEFEEFPVKK 383
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 540 (195.1 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 130/373 (34%), Positives = 201/373 (53%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L LL A E +G+S+PT +QA IP AL GRD+ SA TG+GKTAAF +P L+ LL
Sbjct: 7 DLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQYLL 66
Query: 62 YRPKRI--PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
P+R PA R+LILTPTRELA+QV + +A+ T + + GG+ + L +
Sbjct: 67 DFPRRKAGPA-RILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILATT 125
Query: 120 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTM 179
DIVVATPGR+++++ ++ R+L++GF + L C R+QT+
Sbjct: 126 QDIVVATPGRLLEYI-DAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTL 184
Query: 180 LFSATLTEDVDELIKLSLTK-PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 238
LFSATL E L K P + A+P + ++ + LL
Sbjct: 185 LFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMP---HKVELLKKI 241
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+ I+F T++ L+ A + A + G + Q +R A+ FR+ V+ L+
Sbjct: 242 LTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILL 301
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATDVAARG+D+ + VIN+ PR Y+HR+GRT RAG++G A++ V +D+ ++ +
Sbjct: 302 ATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARV 361
Query: 359 AKRAGSKLKSRIV 371
+ ++K R +
Sbjct: 362 ERYIKEEVKERFI 374
Score = 42 (19.8 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 426 RPKRTWFVTEKEKKLAVK-ADKASIEK 451
RPK V +K+KK K ADK +++K
Sbjct: 378 RPKHKKPVFKKKKKDIKKTADKGAVKK 404
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 540 (195.1 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 130/373 (34%), Positives = 201/373 (53%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L LL A E +G+S+PT +QA IP AL GRD+ SA TG+GKTAAF +P L+ LL
Sbjct: 7 DLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQYLL 66
Query: 62 YRPKRI--PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
P+R PA R+LILTPTRELA+QV + +A+ T + + GG+ + L +
Sbjct: 67 DFPRRKAGPA-RILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILATT 125
Query: 120 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTM 179
DIVVATPGR+++++ ++ R+L++GF + L C R+QT+
Sbjct: 126 QDIVVATPGRLLEYI-DAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTL 184
Query: 180 LFSATLTEDVDELIKLSLTK-PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 238
LFSATL E L K P + A+P + ++ + LL
Sbjct: 185 LFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMP---HKVELLKKI 241
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+ I+F T++ L+ A + A + G + Q +R A+ FR+ V+ L+
Sbjct: 242 LTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILL 301
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATDVAARG+D+ + VIN+ PR Y+HR+GRT RAG++G A++ V +D+ ++ +
Sbjct: 302 ATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARV 361
Query: 359 AKRAGSKLKSRIV 371
+ ++K R +
Sbjct: 362 ERYIKEEVKERFI 374
Score = 42 (19.8 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 426 RPKRTWFVTEKEKKLAVK-ADKASIEK 451
RPK V +K+KK K ADK +++K
Sbjct: 378 RPKHKKPVFKKKKKDIKKTADKGAVKK 404
>WB|WBGene00019219 [details] [associations]
symbol:H20J04.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0002009 GO:GO:0040010
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:FO080156
RefSeq:NP_001040789.1 ProteinModelPortal:Q2WF63 SMR:Q2WF63
PaxDb:Q2WF63 EnsemblMetazoa:H20J04.4b GeneID:186756
KEGG:cel:CELE_H20J04.4 UCSC:H20J04.4a CTD:186756 WormBase:H20J04.4b
InParanoid:Q2WF63 NextBio:932876 ArrayExpress:Q2WF63 Uniprot:Q2WF63
Length = 561
Score = 542 (195.9 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
Identities = 148/437 (33%), Positives = 225/437 (51%)
Query: 22 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81
TP+QAACIP L G DI G A TG+GKT AFA+P L++L P I A LILTPTREL
Sbjct: 113 TPVQAACIPKILEGSDILGCARTGTGKTLAFAIPILQKLSVDPYGIYA---LILTPTREL 169
Query: 82 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRN---SM 138
A Q+ + + ++C ++VGG S Q L P +VVATPGR+ D + + ++
Sbjct: 170 AFQIAEQFTALGKPITLKCSVIVGGRSLIHQARELSERPHVVVATPGRLADLIESDPDTI 229
Query: 139 SXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLT 198
+ R+LE ++ ++ + ++RQT+L SAT+T +++ L ++S
Sbjct: 230 AKVFKKIQFFVLDEADRMLEGQYNDQLKPIFESISEKRQTLLLSATITNNINMLHRVSTR 289
Query: 199 KPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLL----SLCSKTFTSKVIIFSGTKQ 254
KP D ST+ ++A L+ + K S V+IF+ T +
Sbjct: 290 KPYFFE-DKGKDDESTVDRLEQKYVVCPVAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCR 348
Query: 255 AAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT 314
L +F + LH + Q QRL AL FR + + +I TDVA+RGLDI V
Sbjct: 349 ECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDL 408
Query: 315 VINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQ 374
V+N+ P+ +Y+HRVGR+ARAGR G A++FVT D LL+A+ + G KL V+ +
Sbjct: 409 VVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQVIGKKLDELKVSPK 468
Query: 375 SITKW--SKIIEQMEDQVAAILQXXXXXX-ILRKAE--MEATKAENMIAHKEEIFARPKR 429
+TK+ ++ + E ++ Q I R+ E M + H EE+ R +R
Sbjct: 469 HVTKYVTQVLVAKKEAELKLENQKFGEKKEINRRKELLMSGMDEDEADRHLEEM--RTRR 526
Query: 430 TWFVTEKEKKLAVKADK 446
K +K++ + DK
Sbjct: 527 MTNSKRKLEKISGQLDK 543
Score = 38 (18.4 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 558 ESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHSFKSKSRYKR 601
E++ +EMR ++ K +K +G + K+ + F+ K K+
Sbjct: 514 EADRHLEEMRTRRMTNSKRKLEKISGQLDKRDR--FQKKLAAKK 555
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 136/379 (35%), Positives = 202/379 (53%)
Query: 17 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPA--IRVLI 74
GY +PTPIQ CIP + G D+ G A TG+GKTAAF+LP + + I A R LI
Sbjct: 21 GYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINKFGRNKIDIKAKSTRSLI 80
Query: 75 LTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHL 134
LTPTRELA Q+ I+ + ++ +V GG+ + Q ++ DI+VATPGR++D +
Sbjct: 81 LTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDSIELGLDILVATPGRLLDLI 140
Query: 135 RNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIK 194
+L++GF ++ ++ PK RQT+LFSAT+ +++ L +
Sbjct: 141 ETG-DINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKSRQTLLFSATMPAEIEILAE 199
Query: 195 LSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQ 254
LT P ++ T+ N+ +L ++ +K KV+IF TK
Sbjct: 200 AILTDPTKIQITAETV---TIDLVNQSVYHLDKSNKVPLLFNILTKADYEKVLIFCKTKY 256
Query: 255 AAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT 314
A + A++ AA LH TQA R EAL+ F+ + L+ATDVAARG+D+ +
Sbjct: 257 GADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRVLVATDVAARGIDVDNITL 316
Query: 315 VINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQ 374
VINY P D +Y+HR+GRTARAG+ G A++F +ND L I G + +V EQ
Sbjct: 317 VINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVENDIRQLTNIENSIGQVIP--VVTEQ 374
Query: 375 SITK-WSK--IIEQMEDQV 390
K +SK I ++ + QV
Sbjct: 375 PFHKEFSKAPIQDKKKKQV 393
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 136/371 (36%), Positives = 197/371 (53%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS L+ A EA GY++PTP+Q IP L GRD+ +A TG+GKT FALP LERL
Sbjct: 6 LGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFP 65
Query: 63 R--PKRI----PAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
P + P RVL+LTPTRELA QVH + A+ + GG+ Q A
Sbjct: 66 NGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMNPQVQA 125
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKR 175
+ D++VA PGR++D L S R+L++GF ++ +++ P +
Sbjct: 126 MARGVDVLVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAK 184
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLL 235
RQ +LFSAT ++D+ +L L P R+ P +T+ ++ A+L
Sbjct: 185 RQNLLFSATFSKDITDLAGKLLHNPERIEVTPPN---TTVERIEQRVFRLPASHKRALLA 241
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
L + +V++F+ TK A+RL L A +HGN +Q R +AL F+ V
Sbjct: 242 HLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGEVR 301
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATD+AARGLDI + V+N+ P YVHR+GRT RAGR G A++ V ++ LL
Sbjct: 302 ILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLL 361
Query: 356 KAIAKRAGSKL 366
K+I + K+
Sbjct: 362 KSIERMTKQKI 372
>POMBASE|SPBC543.06c [details] [associations]
symbol:dbp8 "ATP-dependent RNA helicase Dbp8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC543.06c GO:GO:0005524 GO:GO:0005730
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW
RefSeq:NP_596794.1 ProteinModelPortal:Q9HGM5 STRING:Q9HGM5
EnsemblFungi:SPBC543.06c.1 GeneID:2541069 KEGG:spo:SPBC543.06c
NextBio:20802183 Uniprot:Q9HGM5
Length = 453
Score = 538 (194.4 bits), Expect = 4.8e-54, Sum P(2) = 4.8e-54
Identities = 156/451 (34%), Positives = 226/451 (50%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L +S L+ +AL +PT IQ I L GR+ G A TGSGKTAAFALP +E+
Sbjct: 11 DLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWS 70
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P I A LILTPTRELA+Q+ + +++ L+VGG+ Q L P
Sbjct: 71 KDPSGIFA---LILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPH 127
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXX---XXRLLELGFSAEIHELVRLCP--KRR 176
+VVATPGR+ D +R++ RLL F+ ++ + + P + R
Sbjct: 128 VVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDR 187
Query: 177 QTMLFSATLTEDVDELIKLSLTK----PLRLSA--DPSAKRPSTLTXXXXXXXXXXXXNQ 230
QT+LF+AT+T+ + +L K K PL L + PSTL +
Sbjct: 188 QTLLFTATVTDAIRQL-KYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQV---R 243
Query: 231 EAVLLSLCSKTFTSK--VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALEL 288
EA L+ L + +K IIF + A + + L L+ ELH + Q +R+ +L
Sbjct: 244 EAYLVHLLTIPENAKKSAIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGR 303
Query: 289 FRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 348
FR + L+ATDVA+RGLDI VQ VIN+ PRD Y+HRVGRTARAGR G +++ VT
Sbjct: 304 FRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVT 363
Query: 349 DNDRSLLKAIAKRAGSKLKS-RIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAE 407
+ D L+ AI R G+KL V+E + ++ K + + Q A++ R+
Sbjct: 364 ERDVDLVHAIEDRVGTKLSEYEHVSENKMLEYIKEVTDAKRQ-ASLEMIDRGFGERRQKR 422
Query: 408 MEATKAENMIAHKEEIFARPKRTWFVTEKEK 438
E N I++K + R K+ EK
Sbjct: 423 NEKRLMANGISNKLKNSGRKKKAKNTLSTEK 453
Score = 38 (18.4 bits), Expect = 4.8e-54, Sum P(2) = 4.8e-54
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 504 DKLQGSGKDKKEKAGIS 520
+KL+ SG+ KK K +S
Sbjct: 434 NKLKNSGRKKKAKNTLS 450
>GENEDB_PFALCIPARUM|PFB0860c [details] [associations]
symbol:PFB0860c "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AE001362
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802 HSSP:P10081
KO:K14777 PIR:C71604 RefSeq:XP_001349688.1
ProteinModelPortal:O96264 EnsemblProtists:PFB0860c:mRNA
GeneID:812770 KEGG:pfa:PFB0860c EuPathDB:PlasmoDB:PF3D7_0218400
OMA:KHRAKRV ProtClustDB:CLSZ2432676 Uniprot:O96264
Length = 562
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 130/366 (35%), Positives = 193/366 (52%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+LN+ +L + + LG+ KPT IQ +P A +DI G + TGSGKTA F +P L+ L
Sbjct: 160 DLNICEEILESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPILQDLK 219
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ A L+++PTREL +Q+ + + I C + GG+ Q L P+
Sbjct: 220 VNKQSFYA---LVISPTRELCIQISQNFQALGMNLLINICTIYGGVDIVTQSLNLAKKPN 276
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
++V+TPGR++DHL N+ +LL F + I++L+ + P R T LF
Sbjct: 277 VIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSQDFESSINKLLLILPPNRITFLF 336
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+T++V +L K L P+++ + + ST++ + L SLC
Sbjct: 337 SATMTKNVAKLKKACLKNPVKVEV---SNKYSTVSTLIETYIFLPLKYKYTYLSSLCFHY 393
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
T +IIF+ T A +L LK+ LHG LTQ QRL +L F+ + LI+T
Sbjct: 394 QTRNIIIFTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNSFKVNKYNILISTQ 453
Query: 302 VAARGLDIIGVQTVINY-ACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
V ARGLD+ ++ VIN+ C Y+HRVGRTARAGR G ++TFVT D AI K
Sbjct: 454 VGARGLDLQDIKIVINFDIC--SCKEYIHRVGRTARAGRSGKSITFVTQYDVENFLAIEK 511
Query: 361 RAGSKL 366
+ K+
Sbjct: 512 QLNKKI 517
>UNIPROTKB|O96264 [details] [associations]
symbol:PFB0860c "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AE001362 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 HSSP:P10081 KO:K14777 PIR:C71604
RefSeq:XP_001349688.1 ProteinModelPortal:O96264
EnsemblProtists:PFB0860c:mRNA GeneID:812770 KEGG:pfa:PFB0860c
EuPathDB:PlasmoDB:PF3D7_0218400 OMA:KHRAKRV ProtClustDB:CLSZ2432676
Uniprot:O96264
Length = 562
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 130/366 (35%), Positives = 193/366 (52%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+LN+ +L + + LG+ KPT IQ +P A +DI G + TGSGKTA F +P L+ L
Sbjct: 160 DLNICEEILESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPILQDLK 219
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ A L+++PTREL +Q+ + + I C + GG+ Q L P+
Sbjct: 220 VNKQSFYA---LVISPTRELCIQISQNFQALGMNLLINICTIYGGVDIVTQSLNLAKKPN 276
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
++V+TPGR++DHL N+ +LL F + I++L+ + P R T LF
Sbjct: 277 VIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSQDFESSINKLLLILPPNRITFLF 336
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+T++V +L K L P+++ + + ST++ + L SLC
Sbjct: 337 SATMTKNVAKLKKACLKNPVKVEV---SNKYSTVSTLIETYIFLPLKYKYTYLSSLCFHY 393
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
T +IIF+ T A +L LK+ LHG LTQ QRL +L F+ + LI+T
Sbjct: 394 QTRNIIIFTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNSFKVNKYNILISTQ 453
Query: 302 VAARGLDIIGVQTVINY-ACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
V ARGLD+ ++ VIN+ C Y+HRVGRTARAGR G ++TFVT D AI K
Sbjct: 454 VGARGLDLQDIKIVINFDIC--SCKEYIHRVGRTARAGRSGKSITFVTQYDVENFLAIEK 511
Query: 361 RAGSKL 366
+ K+
Sbjct: 512 QLNKKI 517
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 128/364 (35%), Positives = 189/364 (51%)
Query: 4 NLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYR 63
N + ++ A GY +PTPIQA IP L G D+ G A TG+GKTAA+ALP ++++L
Sbjct: 7 NFAPAVMAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQKMLST 66
Query: 64 PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIV 123
P+ +R L+L PTRELA Q+ + Q IR C + GG++ Q LRS D+V
Sbjct: 67 PRG--RVRTLVLAPTRELACQIAESFRSLGQRARIRECSIYGGVNMDQQIRRLRSGVDVV 124
Query: 124 VATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSA 183
VA PGR++DH+ + R+ ++GF +I +++ + QT+LFSA
Sbjct: 125 VACPGRLLDHIWRG-TIDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQTLLFSA 183
Query: 184 TLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFT 243
T+ +V +L + T P+ + A S + +L+ + T T
Sbjct: 184 TMPPEVRKLTLETQTNPVTIQIGTQAPASSV----SHSVYPVKNHQKTPLLIEILKTTET 239
Query: 244 SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA 303
V+IF+ TK A L A A L GNL+Q +R +E FR+ + L+ATD+A
Sbjct: 240 KSVLIFARTKYGAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVATDIA 299
Query: 304 ARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAG 363
ARGLDI + VINY P Y HR+GRT R R G A++ VT D +++ I K
Sbjct: 300 ARGLDIDHISHVINYDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGRDGDMVRDIQKLIN 359
Query: 364 SKLK 367
S ++
Sbjct: 360 SPIQ 363
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 133/368 (36%), Positives = 196/368 (53%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L+ +L+A A GY++PTP+QAA +P AL D+ +A TG+GKTAAF LP L+RL
Sbjct: 5 ELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQRLS 64
Query: 62 YRPK---RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
P+ R P RVL+LTPTRELA QV + F +R ++GG+ Q L +
Sbjct: 65 SPPQGPGRGP--RVLVLTPTRELAQQVTDAVRTYGAFMRVRSGAILGGMPYHAQLRLLSA 122
Query: 119 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 178
D +VATPGR++D L + S R+L++GFS ++ + P RQT
Sbjct: 123 PVDFIVATPGRLVD-LLDRRSLDLSRLELLVLDEADRMLDMGFSDDVDRIAAASPATRQT 181
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 238
+LF+AT+ + L L +P R+ D + + + ++ +L L
Sbjct: 182 LLFTATMDSAMARLAGRLLREPERI--DIAGTKTTHEHIEQRLHVADDLHHKNRLLRHLI 239
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+ + IIFS TK+ A L + AA LHG++ Q R + ++ + L+
Sbjct: 240 TDESLRRAIIFSATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIRLLV 299
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATDVAARGLD+ G+ VIN+ P+ YVHR+GRT RAG G A++F + N+ + L I
Sbjct: 300 ATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVNYLARI 359
Query: 359 AKRAGSKL 366
+ G L
Sbjct: 360 ERYIGQTL 367
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 143/394 (36%), Positives = 202/394 (51%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L ++ A A GY +P+ IQ IP+ L G D+ G A TG+GKTAAFALP L R+
Sbjct: 11 LELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRI-- 68
Query: 63 RP-KRIPAIRVLILTPTRELAVQVHSMIEKIA-QFTDIRCCLVVGGLSTKMQETALRSMP 120
P KR P + LIL PTRELA+QV + E A Q + V GG Q A+R+
Sbjct: 69 DPSKREP--QALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGA 126
Query: 121 DIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTML 180
IVVATPGR+ DHLR +L+LGF ++ + + P+ RQT+L
Sbjct: 127 QIVVATPGRLCDHLRRD-EKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTVL 185
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSK 240
FSATL + + + + L P + + T+T + + +LSL
Sbjct: 186 FSATLPQSIRAIAERHLKDPKHVKIQ---SKTQTVTAIEQAHLLVHADQKTSAVLSLLEV 242
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+I+F TKQA L KAA L+G++ Q QR ++ + +D ++AT
Sbjct: 243 EDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVAT 302
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ + V N P D SYVHR+GRT RAGREG A+ VT +R +L+ I +
Sbjct: 303 DVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIER 362
Query: 361 RAGSKLKS-RIVAEQSI--TKWSKIIEQMEDQVA 391
G K+ R+ Q++ + K+ + VA
Sbjct: 363 VTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVA 396
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 528 (190.9 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
Identities = 131/363 (36%), Positives = 183/363 (50%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L+ +L+A GY+ PTPIQ IP L G D+ G A TG+GKTAAF LP ++RL
Sbjct: 8 DFGLAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQRLS 67
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
R R LIL PTRELA QV EK ++ + L++GG+S K QET L+ D
Sbjct: 68 TGRARARMPRCLILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQETLLQRGVD 127
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR++D R+L++GF +I ++ P RQT+LF
Sbjct: 128 VLIATPGRLMDQFDRG-KLLMMGVETLIIDEADRMLDMGFIPDIEKICAKLPANRQTLLF 186
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT D+ L K P ++ A+ T++ + L + T
Sbjct: 187 SATFPTDIQRLAKTFQKDPKKIEVTRPAQTAETISQFVVKLPTNDGKARRTALRRVIEAT 246
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
I+F K + AA +HG+L Q+ R E L+ FR + L+A+D
Sbjct: 247 NVKNGIVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRFRDGKLKLLVASD 306
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD-NDRS---LLKA 357
VAARGLDI V V N+ P YVHR+GRT RAGR G + T VT +D+S ++K
Sbjct: 307 VAARGLDIPDVGHVFNFGPPPKDEDYVHRIGRTGRAGRTGESYTVVTPADDKSWGFVVKM 366
Query: 358 IAK 360
I K
Sbjct: 367 IKK 369
Score = 37 (18.1 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 566 MRELFHSDMSEKKQKRTGGIG 586
+ EL EK+ ++TGG G
Sbjct: 380 LEELETLPPEEKRDRKTGGRG 400
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 136/378 (35%), Positives = 199/378 (52%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL + PL LGY PTP+QAA IP L+GRD+ A TGSGKTAAFALP L+RL
Sbjct: 13 ELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLS 72
Query: 62 YRP---KRIPAIRVLILTPTRELAVQV-HSMIEKIAQFT-DIRCCLVVGGLSTKMQETAL 116
K +R L+L PTRELA QV S + + F ++ GG+S +Q +L
Sbjct: 73 EAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSL 132
Query: 117 RSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRR 176
R+ D++VATPGR++D L ++ + R+L LGF+ E+ +++ P+++
Sbjct: 133 RAGADVLVATPGRLLDLLASN-ALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPRQK 191
Query: 177 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS 236
QT+LFSAT E+V L L +PL +++ ST+ + A+L
Sbjct: 192 QTLLFSATFPEEVRALTTKLLHQPLEYHLQ--SEQESTIEQRVITVNRE---QKTALLAH 246
Query: 237 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 296
L + S+ +IF K + L + A HG+ Q R L+ F+ +
Sbjct: 247 LIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISV 306
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 356
LIATD+AARG+DI + VIN+ PR Y+HR+GR+ RAG G AVT ++ +
Sbjct: 307 LIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFG 366
Query: 357 AIAKRAGSKLKSRIVAEQ 374
I K+ +K+K +V EQ
Sbjct: 367 VIEKK--NKIK--LVREQ 380
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 136/378 (35%), Positives = 199/378 (52%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL + PL LGY PTP+QAA IP L+GRD+ A TGSGKTAAFALP L+RL
Sbjct: 13 ELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLS 72
Query: 62 YRP---KRIPAIRVLILTPTRELAVQV-HSMIEKIAQFT-DIRCCLVVGGLSTKMQETAL 116
K +R L+L PTRELA QV S + + F ++ GG+S +Q +L
Sbjct: 73 EAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSL 132
Query: 117 RSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRR 176
R+ D++VATPGR++D L ++ + R+L LGF+ E+ +++ P+++
Sbjct: 133 RAGADVLVATPGRLLDLLASN-ALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPRQK 191
Query: 177 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS 236
QT+LFSAT E+V L L +PL +++ ST+ + A+L
Sbjct: 192 QTLLFSATFPEEVRALTTKLLHQPLEYHLQ--SEQESTIEQRVITVNRE---QKTALLAH 246
Query: 237 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 296
L + S+ +IF K + L + A HG+ Q R L+ F+ +
Sbjct: 247 LIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISV 306
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 356
LIATD+AARG+DI + VIN+ PR Y+HR+GR+ RAG G AVT ++ +
Sbjct: 307 LIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFG 366
Query: 357 AIAKRAGSKLKSRIVAEQ 374
I K+ +K+K +V EQ
Sbjct: 367 VIEKK--NKIK--LVREQ 380
>DICTYBASE|DDB_G0282741 [details] [associations]
symbol:ddx18 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282741 GO:GO:0005524
GO:GO:0005730 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 InterPro:IPR025313 Pfam:PF13959
RefSeq:XP_640236.1 ProteinModelPortal:Q54S03 STRING:Q54S03
EnsemblProtists:DDB0234194 GeneID:8623775 KEGG:ddi:DDB_G0282741
KO:K13179 OMA:KDGYRSY Uniprot:Q54S03
Length = 602
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 135/389 (34%), Positives = 206/389 (52%)
Query: 11 RACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL---YRPKRI 67
++ E +G+ K TPIQA I L G+D+ G+A TGSGKT AF +P +E L+ ++P+
Sbjct: 132 KSIEEMGFKKMTPIQAKSILPLLEGKDLLGAARTGSGKTLAFLIPAIEVLVKSNFKPRN- 190
Query: 68 PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATP 127
V+I++PTRELA+Q++ + ++ ++ +V+GG S K +E L +++VATP
Sbjct: 191 -GTGVIIISPTRELALQIYGVARELMKYHTQTHGIVIGGASKKPEEERLEKGVNLLVATP 249
Query: 128 GRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 187
GR++DHL+N+ R+LE+GF E+H++++ PK RQTMLFSAT T
Sbjct: 250 GRLLDHLQNTKGFITKNLKCLIIDEADRILEVGFEEEMHQIIKKVPKTRQTMLFSATQTR 309
Query: 188 DVDELIKLSLTK-PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKV 246
VD++ K+SL P+ + D + ST+ + +L + K + K+
Sbjct: 310 KVDDIAKVSLNNSPVYVGVDDE-REISTVEGLEQGYVVCPSERRFLLLYTFLKKNLSKKI 368
Query: 247 IIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 306
I+F + A L + ELHG Q +R F LI TDVAARG
Sbjct: 369 IVFLSSCNAVKYTAELLNYIDIPVLELHGRQKQQKRTNTFYEFVNAEKGILICTDVAARG 428
Query: 307 LDIIGVQTVINYACPRDLTSYVHRVGRTARA-GREGYAVTFVTDNDRSLLKAIAKRAGSK 365
LDI V +I Y P D Y+HRVGRTAR G++G A+ F+ + LK + K
Sbjct: 429 LDIPSVDWIIQYDPPDDPKEYIHRVGRTARGVGKKGRALLFLLPKELGFLKYL------K 482
Query: 366 LKSRIVAEQSITKWSKIIEQMEDQVAAIL 394
L + E K SKI ++DQ+ ++
Sbjct: 483 LAKVPLNEYEFPK-SKIAN-VQDQLEKVV 509
>ZFIN|ZDB-GENE-021220-2 [details] [associations]
symbol:ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
54" species:7955 "Danio rerio" [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021220-2 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14808
HOGENOM:HOG000246455 GeneTree:ENSGT00550000075100 CTD:79039
HOVERGEN:HBG051333 OrthoDB:EOG469QTB EMBL:CU929062 EMBL:FP236447
EMBL:AY099535 IPI:IPI00481864 RefSeq:NP_775375.1 UniGene:Dr.18320
STRING:Q8JGR2 Ensembl:ENSDART00000026416 Ensembl:ENSDART00000128587
GeneID:286777 KEGG:dre:286777 NextBio:20806437 Uniprot:Q8JGR2
Length = 862
Score = 527 (190.6 bits), Expect = 1.2e-52, Sum P(2) = 1.2e-52
Identities = 127/351 (36%), Positives = 184/351 (52%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+ LS P+ + GY PTPIQ IP+ L G+D+ A TGSGKTAAF +P E+L
Sbjct: 83 MGLSYPVYKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAAFLVPLFEKLK- 141
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P+ R LILTPTRELA+Q +++ +FT +R L++GG S Q AL PDI
Sbjct: 142 APQAQTGARALILTPTRELALQTMKFTKELGKFTGLRTALILGGDSMDDQFAALHENPDI 201
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ TPGR++ H+ M+ RL E+GF+ ++ E++R P RQT+LFS
Sbjct: 202 IIGTPGRLM-HVIQEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIRRLPDARQTLLFS 260
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTF 242
ATL + + E + LT+P+ + D K L ++ A+LL L
Sbjct: 261 ATLPKLIVEFARAGLTEPVLIRLDVDTKLSEQLKLSFFSLRLD---DKPALLLHLLRNVV 317
Query: 243 T--SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+ ++F TK LK L + + ++ L Q R ++ F + V L+ T
Sbjct: 318 KPQEQTVVFVATKHHVEYLKELLSAEGVDCSCIYSALDQTARKISIGRFVHRKVMLLLVT 377
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
DVAARG+DI + VINY P ++HRVGR ARAGR G A + V ++
Sbjct: 378 DVAARGIDIPLLDNVINYNFPCKPKLFLHRVGRVARAGRGGTAYSLVCPDE 428
Score = 48 (22.0 bits), Expect = 1.2e-52, Sum P(2) = 1.2e-52
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 543 KIVKSNGKKSKHSSQESNS----RAKEMRELFHSDMSEKKQKRTGG 584
+ V+ GK+ KH + S R + ++ F+ + +KK K GG
Sbjct: 712 RFVRDTGKEDKHKKIRTESGQLIRGHKKKKSFYEEW-KKKYKVEGG 756
>FB|FBgn0052344 [details] [associations]
symbol:CG32344 species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:AE014296
GO:GO:0022008 GO:GO:0006200 GO:GO:0003723 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14808
GeneTree:ENSGT00550000075100 HSSP:P10081 EMBL:AY075397
RefSeq:NP_612028.4 UniGene:Dm.796 SMR:Q8SY39 IntAct:Q8SY39
STRING:Q8SY39 EnsemblMetazoa:FBtr0072576 GeneID:326208
KEGG:dme:Dmel_CG32344 UCSC:CG32344-RA FlyBase:FBgn0052344
InParanoid:Q8SY39 OMA:NANDEMS OrthoDB:EOG40CFZ4 GenomeRNAi:326208
NextBio:847633 Uniprot:Q8SY39
Length = 827
Score = 531 (192.0 bits), Expect = 2.1e-52, Sum P(2) = 2.1e-52
Identities = 127/353 (35%), Positives = 183/353 (51%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+ L L++ GY PTPIQ IPL L GRD+ A TGSGKTA F +P E+L
Sbjct: 44 MGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKL-Q 102
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
R + R LIL+PTRELAVQ + I+++ +F +++ LV+GG S Q +A+ + PD+
Sbjct: 103 RREPTKGARALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTCPDV 162
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+VATPGR + HL M RL E+GF +++E + P RQT++FS
Sbjct: 163 IVATPGRFL-HLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQTVMFS 221
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTF 242
ATL + + E + L P+ + D +K P L VLL
Sbjct: 222 ATLPKLLVEFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDDRYTALVVLLKYVIPV- 280
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
S+ ++F+GT+ + + A + A ++ +L A R F + V LI TDV
Sbjct: 281 QSQTVVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLIVTDV 340
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
AARG+DI + V+N P +VHRVGR ARAGR G A + V+ +D + L
Sbjct: 341 AARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHL 393
Score = 39 (18.8 bits), Expect = 2.1e-52, Sum P(2) = 2.1e-52
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 543 KIVKSNGKKS--KHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPK 590
+IVKS + K ++E+ R E R+ K + TGG K+ K
Sbjct: 779 QIVKSRMRLEFIKKRNEENAERKSENRKRSMRKTQRPKAQSTGG-SKRRK 827
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 130/369 (35%), Positives = 199/369 (53%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L LL LG + PTPIQ IP L G+D+ A TG+GKTAAF LP ++R +
Sbjct: 10 QLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFI 69
Query: 62 YRPKRIPA----IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 117
+P + A IR L+L PTRELA QV ++ A+ T+++ V GG S K+Q LR
Sbjct: 70 EQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLR 129
Query: 118 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQ 177
DI++ATPGR++DH + S R+L++GF ++ ++R RQ
Sbjct: 130 GGVDILIATPGRLLDHA-HVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQ 188
Query: 178 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 237
T+ FSAT + + + P+ + PS T+ +E + +
Sbjct: 189 TLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKR--KRELLSYLI 246
Query: 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
SK + +V++F+ T+Q + L L +KA ++G+ +Q R +AL+ F+ V L
Sbjct: 247 GSKNW-QQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRAL 305
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
IATDVAARGLDI ++ V+NY P YVHR+GRT RAG G AV+ ++ +++ L+A
Sbjct: 306 IATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEA 365
Query: 358 IAKRAGSKL 366
I + ++L
Sbjct: 366 IERLLNTRL 374
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 130/369 (35%), Positives = 199/369 (53%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L LL LG + PTPIQ IP L G+D+ A TG+GKTAAF LP ++R +
Sbjct: 10 QLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFI 69
Query: 62 YRPKRIPA----IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 117
+P + A IR L+L PTRELA QV ++ A+ T+++ V GG S K+Q LR
Sbjct: 70 EQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLR 129
Query: 118 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQ 177
DI++ATPGR++DH + S R+L++GF ++ ++R RQ
Sbjct: 130 GGVDILIATPGRLLDHA-HVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQ 188
Query: 178 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 237
T+ FSAT + + + P+ + PS T+ +E + +
Sbjct: 189 TLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKR--KRELLSYLI 246
Query: 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
SK + +V++F+ T+Q + L L +KA ++G+ +Q R +AL+ F+ V L
Sbjct: 247 GSKNW-QQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRAL 305
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
IATDVAARGLDI ++ V+NY P YVHR+GRT RAG G AV+ ++ +++ L+A
Sbjct: 306 IATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEA 365
Query: 358 IAKRAGSKL 366
I + ++L
Sbjct: 366 IERLLNTRL 374
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 135/362 (37%), Positives = 189/362 (52%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L L+ E +G+++PT IQ IP A+ G D+ S+ TGSGKT AF +P L+RL
Sbjct: 5 DFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRLS 64
Query: 62 YR---PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
KR P RV+ILTPTRELA QV S + T + L++GG + Q L+
Sbjct: 65 KNRALSKRDP--RVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQK 122
Query: 119 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKR-RQ 177
P+ +VATPGR+ DHL R+L+LGFS E+ ++ + R RQ
Sbjct: 123 EPEFIVATPGRLADHLTQG-HFHLNGLELLILDEADRMLDLGFSKELTQINKAADHRKRQ 181
Query: 178 TMLFSATLTE-DVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS 236
T+LFSATL V+E LTKP R++ + A + +EA+L
Sbjct: 182 TLLFSATLDHAQVNEFATELLTKPKRIAIN--AGHSEHVDIAKRFYLADNLTQKEALLQH 239
Query: 237 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 296
+ ++IIF+ T+ RL L L A L G L Q QR + +E F K
Sbjct: 240 FLVTEKSQQIIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQHKI 299
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 356
L+ TD+A+RGLD+I V VIN+ P+ +VHR+GRT RAG +G A++ V ND LK
Sbjct: 300 LVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWLSLK 359
Query: 357 AI 358
+
Sbjct: 360 NV 361
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 135/362 (37%), Positives = 189/362 (52%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L L+ E +G+++PT IQ IP A+ G D+ S+ TGSGKT AF +P L+RL
Sbjct: 5 DFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRLS 64
Query: 62 YR---PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
KR P RV+ILTPTRELA QV S + T + L++GG + Q L+
Sbjct: 65 KNRALSKRDP--RVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQK 122
Query: 119 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKR-RQ 177
P+ +VATPGR+ DHL R+L+LGFS E+ ++ + R RQ
Sbjct: 123 EPEFIVATPGRLADHLTQG-HFHLNGLELLILDEADRMLDLGFSKELTQINKAADHRKRQ 181
Query: 178 TMLFSATLTE-DVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS 236
T+LFSATL V+E LTKP R++ + A + +EA+L
Sbjct: 182 TLLFSATLDHAQVNEFATELLTKPKRIAIN--AGHSEHVDIAKRFYLADNLTQKEALLQH 239
Query: 237 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 296
+ ++IIF+ T+ RL L L A L G L Q QR + +E F K
Sbjct: 240 FLVTEKSQQIIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQHKI 299
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 356
L+ TD+A+RGLD+I V VIN+ P+ +VHR+GRT RAG +G A++ V ND LK
Sbjct: 300 LVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWLSLK 359
Query: 357 AI 358
+
Sbjct: 360 NV 361
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
Identities = 139/424 (32%), Positives = 216/424 (50%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL + +A+G+ PT IQ +P AL RDI A TG+GKTA+F LP L+ L+
Sbjct: 5 DFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQHLI 64
Query: 62 YRPKRIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
P+R RVLILTPTRELA Q+H +A + ++ GG+ QE AL+
Sbjct: 65 DFPRRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEALKGNI 124
Query: 121 DIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTML 180
DI+VATPGR++++L R+L++GFSA + + R+Q ML
Sbjct: 125 DILVATPGRLMEYLDKG-KFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQNML 183
Query: 181 FSATLT-EDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCS 239
FSATL V + L P+ + D K + + ++ A+L L
Sbjct: 184 FSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKI--HQWIHLADDKDHKFALLCHLLK 241
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+ + I+F T+ L+ A + A + G++ Q +R +AL F K V+ L+A
Sbjct: 242 QEDVKRAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLLA 301
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVAARG+DI + VIN+ PR +Y+HR+GRT RAG +G A++ +D ++ I
Sbjct: 302 TDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGKIE 361
Query: 360 KRAGSKLKSRIVAE-QSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIA 418
+ LK RI+ E + K +++ + + +V A + ++ EA K + IA
Sbjct: 362 RYIEQPLKRRIIEELRPKHKEARVPTKKKAKVKA------KEAAKKTSKKEAAKKASKIA 415
Query: 419 HKEE 422
K++
Sbjct: 416 RKKQ 419
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
Identities = 139/424 (32%), Positives = 216/424 (50%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL + +A+G+ PT IQ +P AL RDI A TG+GKTA+F LP L+ L+
Sbjct: 5 DFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQHLI 64
Query: 62 YRPKRIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
P+R RVLILTPTRELA Q+H +A + ++ GG+ QE AL+
Sbjct: 65 DFPRRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEALKGNI 124
Query: 121 DIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTML 180
DI+VATPGR++++L R+L++GFSA + + R+Q ML
Sbjct: 125 DILVATPGRLMEYLDKG-KFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQNML 183
Query: 181 FSATLT-EDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCS 239
FSATL V + L P+ + D K + + ++ A+L L
Sbjct: 184 FSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKI--HQWIHLADDKDHKFALLCHLLK 241
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+ + I+F T+ L+ A + A + G++ Q +R +AL F K V+ L+A
Sbjct: 242 QEDVKRAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLLA 301
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVAARG+DI + VIN+ PR +Y+HR+GRT RAG +G A++ +D ++ I
Sbjct: 302 TDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGKIE 361
Query: 360 KRAGSKLKSRIVAE-QSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIA 418
+ LK RI+ E + K +++ + + +V A + ++ EA K + IA
Sbjct: 362 RYIEQPLKRRIIEELRPKHKEARVPTKKKAKVKA------KEAAKKTSKKEAAKKASKIA 415
Query: 419 HKEE 422
K++
Sbjct: 416 RKKQ 419
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
Identities = 141/374 (37%), Positives = 193/374 (51%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L PLL L Y +PTPIQA IP GRD+ A TGSGKTA FALP L++L
Sbjct: 12 ELGLITPLLARLAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQKLR 71
Query: 62 Y------RPKRIPAIRVLILTPTRELAVQVHSMIEKIA-QFT-DIRCCLVVGGLSTKMQE 113
+ + + L+L PTRELA QV I+ A F +I+ V GG+S +Q
Sbjct: 72 EDISSGSKNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSVNIQM 131
Query: 114 TALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP 173
ALR DI+VATPGR++D L +S + R+L LGF+ E+ L+ L P
Sbjct: 132 LALRGGVDILVATPGRLLD-LISSNAIKLDKVKTLVLDEADRMLSLGFTEELTALLALTP 190
Query: 174 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAV 233
K++QT+LFSAT E V L + L P+ + SA STL + AV
Sbjct: 191 KKKQTLLFSATFPEQVTTLTQELLNNPIEIQLQ-SADA-STLVQRVFTVNKG---EKTAV 245
Query: 234 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 293
L L + + +IF K L + AA HG+ Q++R L+ F+
Sbjct: 246 LAHLIQQEQWRQALIFVNAKHHCEHLAEKLAKRGITAAVFHGDKGQSERSRVLDGFKAGD 305
Query: 294 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 353
++ LIATD+AARGLDI + VIN+ PR + Y+HR+GR+ RAG G A++ + D
Sbjct: 306 IEVLIATDIAARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGLAISLIDHEDYH 365
Query: 354 LLKAIAKRAGSKLK 367
I K+ +LK
Sbjct: 366 HFSVIEKKNKFRLK 379
>CGD|CAL0003050 [details] [associations]
symbol:HAS1 species:5476 "Candida albicans" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IGI;ISS] [GO:0042274
"ribosomal small subunit biogenesis" evidence=IGI;ISS] [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 GO:GO:0042274
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000012
InterPro:IPR025313 Pfam:PF13959 KO:K13179 EMBL:AACQ01000011
RefSeq:XP_721871.1 RefSeq:XP_722031.1 STRING:Q5AK59 GeneID:3636361
GeneID:3636443 KEGG:cal:CaO19.11444 KEGG:cal:CaO19.3962
Uniprot:Q5AK59
Length = 565
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 125/358 (34%), Positives = 193/358 (53%)
Query: 4 NLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYR 63
+ S P ++A + +G++K T +QA IP L GRD+ G+A TGSGKT AF +P +E LLY
Sbjct: 114 DFSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE-LLYS 172
Query: 64 PKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K P V+I+TPTRELA+Q+ + ++ QF C +V+GG + + T L +
Sbjct: 173 LKIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATKLAKGVN 232
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP-KRRQTML 180
++VATPGR++DHL+N+ R+LE+GF E+ +++++ P + RQ+ML
Sbjct: 233 LLVATPGRLLDHLKNTQ-FVFSNLKALVIDEADRILEIGFEDEMKQIIKVLPNENRQSML 291
Query: 181 FSATLTEDVDELIKLSLTK-PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCS 239
FSAT T V++L ++SL PL ++ P K ST + +L S
Sbjct: 292 FSATQTTKVEDLARISLRPGPLYINVVPE-KDVSTADGLEQGYVVCDSDKRFLLLFSFLK 350
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+ K+I+F + + L L +LHG Q +R F L+
Sbjct: 351 RNVKKKIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGILVC 410
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR-EGYAVTFVTDNDRSLLK 356
TDVAARGLDI V ++ + P D Y+HRVGRTAR + +G ++ F+T ++ L+
Sbjct: 411 TDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELGFLR 468
>UNIPROTKB|Q5AK59 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase HAS1"
species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IGI] [GO:0042274 "ribosomal small
subunit biogenesis" evidence=IGI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0042274 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACQ01000012 InterPro:IPR025313 Pfam:PF13959 KO:K13179
EMBL:AACQ01000011 RefSeq:XP_721871.1 RefSeq:XP_722031.1
STRING:Q5AK59 GeneID:3636361 GeneID:3636443 KEGG:cal:CaO19.11444
KEGG:cal:CaO19.3962 Uniprot:Q5AK59
Length = 565
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 125/358 (34%), Positives = 193/358 (53%)
Query: 4 NLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYR 63
+ S P ++A + +G++K T +QA IP L GRD+ G+A TGSGKT AF +P +E LLY
Sbjct: 114 DFSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE-LLYS 172
Query: 64 PKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K P V+I+TPTRELA+Q+ + ++ QF C +V+GG + + T L +
Sbjct: 173 LKIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATKLAKGVN 232
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP-KRRQTML 180
++VATPGR++DHL+N+ R+LE+GF E+ +++++ P + RQ+ML
Sbjct: 233 LLVATPGRLLDHLKNTQ-FVFSNLKALVIDEADRILEIGFEDEMKQIIKVLPNENRQSML 291
Query: 181 FSATLTEDVDELIKLSLTK-PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCS 239
FSAT T V++L ++SL PL ++ P K ST + +L S
Sbjct: 292 FSATQTTKVEDLARISLRPGPLYINVVPE-KDVSTADGLEQGYVVCDSDKRFLLLFSFLK 350
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+ K+I+F + + L L +LHG Q +R F L+
Sbjct: 351 RNVKKKIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGILVC 410
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR-EGYAVTFVTDNDRSLLK 356
TDVAARGLDI V ++ + P D Y+HRVGRTAR + +G ++ F+T ++ L+
Sbjct: 411 TDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELGFLR 468
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
Identities = 131/366 (35%), Positives = 188/366 (51%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L+ +L + GY+ PTPIQ IPL + GRDI G A TG+GKT AFA P L+RL
Sbjct: 12 LGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILDRLSR 71
Query: 63 R--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
P + RVL+L PTRELA Q+ + ++R +V GG Q L
Sbjct: 72 NASPAPVRGTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQLERGA 131
Query: 121 DIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTML 180
I+VATPGR+ID L + ++L+LGF + + + P +RQT+
Sbjct: 132 HILVATPGRLID-LMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVPSKRQTLF 190
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSK 240
FSAT+ + V+ L L P +S P A +T + ++L+
Sbjct: 191 FSATMPKAVESLAATFLRNPAEVSVAPPA---TTAGRIEQRVCFVEQPEKASLLIEKIRD 247
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
I+F+ TK A + A + + +HGN +Q+QR +ALE F+ V L+AT
Sbjct: 248 PELRSAIVFTRTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVPILVAT 307
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARG+ + + VINY P +VHR+GRTARAG G A++F + ++R L+AI K
Sbjct: 308 DIAARGIHVDALTHVINYDLPDVPEQFVHRIGRTARAGNSGVAISFCSRDERPTLRAIEK 367
Query: 361 RAGSKL 366
G KL
Sbjct: 368 LTGLKL 373
>UNIPROTKB|F1NTK9 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003714 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00550000075100
EMBL:AADN02043183 IPI:IPI00582285 ProteinModelPortal:F1NTK9
Ensembl:ENSGALT00000012108 Uniprot:F1NTK9
Length = 822
Score = 521 (188.5 bits), Expect = 2.7e-51, Sum P(2) = 2.7e-51
Identities = 129/351 (36%), Positives = 182/351 (51%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+ LS P+ + GY PTPIQ IP+ L GRD+ A TGSGKTA F LP ERL
Sbjct: 41 MGLSYPVFKGVMKKGYKVPTPIQRKTIPVILRGRDVVAMARTGSGKTACFLLPMFERLK- 99
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P A R LIL+PTRELA+Q +++ +FT ++ LV+GG + Q AL PDI
Sbjct: 100 APSPSGA-RALILSPTRELALQTLKFTKELGKFTGLKTALVLGGDKMEDQFAALHENPDI 158
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR++ H+ M+ RL E+GF+ ++ E++ P QT+LFS
Sbjct: 159 IIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEILARLPGSHQTVLFS 217
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL--CSK 240
ATL + + E + LT+P+ + D +K L ++ AVLL L C
Sbjct: 218 ATLPKLLVEFARAGLTEPMLIRLDVESKLSEQLKLAFFHVRGD---DKPAVLLHLLRCVV 274
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+ ++F TK LK L + ++ +L Q R + F L+ T
Sbjct: 275 KPQDQTVVFVATKHHTEYLKELLTSQGICCTHIYSSLDQTARKINIAKFAHGKCQVLLVT 334
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
DVAARGLDI + VINY+ P ++HRVGR ARAGR G A + V ++
Sbjct: 335 DVAARGLDIPMLDNVINYSFPAKSKLFLHRVGRVARAGRSGTAYSLVAPDE 385
Score = 39 (18.8 bits), Expect = 2.7e-51, Sum P(2) = 2.7e-51
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 555 SSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHSFKS 595
SS N+ ++ ++ D ++ + GG + KH F S
Sbjct: 700 SSSYKNNLYEKWKQKNKVDERDEDEDNQGGREQTSKHGFTS 740
>DICTYBASE|DDB_G0284017 [details] [associations]
symbol:ddx10 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0284017 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000153_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AAFI02000059 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HSSP:P26196 RefSeq:XP_638786.1 ProteinModelPortal:Q54Q94
STRING:Q54Q94 PRIDE:Q54Q94 EnsemblProtists:DDB0234197
GeneID:8624375 KEGG:ddi:DDB_G0284017 OMA:AMNILIA Uniprot:Q54Q94
Length = 878
Score = 521 (188.5 bits), Expect = 2.9e-51, Sum P(2) = 2.9e-51
Identities = 132/378 (34%), Positives = 205/378 (54%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L +S+ L+A + K T IQ A +P L GRDI G+A TGSGKT +F LP LE L
Sbjct: 145 DLPISQLTLKALTESKFLKLTDIQRASLPHTLCGRDILGAAKTGSGKTLSFILPILETL- 203
Query: 62 YRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
+R + R I ++L+PTRELA+Q+ +++ + ++ L++GG + + ++ + +M
Sbjct: 204 WRNRWGRDDGIGAIVLSPTRELAIQIFDVLKAVGKYHTFSAGLIIGGRNVQQEKDKINAM 263
Query: 120 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTM 179
+I++ATPGR++ H+ + R+L+LGFS ++ +V P+ RQT+
Sbjct: 264 -NILIATPGRLLQHMDETYGFDCSNLKILVLDEADRILDLGFSKCLNSIVENLPRERQTL 322
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPS--AKRPSTLTXXXXXXXXXXXXNQEAVLLSL 237
LFSAT T+ + +L +LSL +P +S P LT N +L S
Sbjct: 323 LFSATQTKSIRDLARLSLQEPEYISVYEKDITTTPQNLTQTLCVIPLEMKLN---MLFSF 379
Query: 238 CSKTFTSKVIIF-SGTKQA--AHR-LKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 293
TSK+I+F + KQ AH K+L L LHG + Q RLE E F K+
Sbjct: 380 IKTHLTSKIIVFFASCKQVRFAHETFKLLNPGTTL--FPLHGKMKQWTRLEVFEDFCKKK 437
Query: 294 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 353
L ATD+AARGLD V+ VI CP D+ +Y+HRVGRTAR G ++T + +++
Sbjct: 438 AGTLFATDIAARGLDFPAVEWVIQVDCPDDIETYIHRVGRTARNDAPGQSITILLPSEKD 497
Query: 354 LLKAIAKRAGSKLKSRIV 371
+ + ++ K+K I+
Sbjct: 498 GMVNLMEK--QKMKFEIL 513
Score = 42 (19.8 bits), Expect = 2.9e-51, Sum P(2) = 2.9e-51
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 351 DRSLLKAIAKRAGSKLKSRIVAEQS 375
D+ LLK KR KL+S+ + +QS
Sbjct: 766 DKILLKERLKRKKLKLQSKELRKQS 790
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 132/372 (35%), Positives = 199/372 (53%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L LS L++ LGY KPT IQ IP+ L GRD+ +A TG+GKTA+F LP LE+L
Sbjct: 5 QLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKLR 64
Query: 62 Y-RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+ +R +R LIL PTRELA+QV +E+ + T ++ V GG+ + Q+ L
Sbjct: 65 QGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGV 124
Query: 121 DIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTML 180
D++VATPGR++D L + R+L++GF I++++ P Q +L
Sbjct: 125 DVLVATPGRLMD-LYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLL 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSK 240
FSATL+ V EL K ++ P +S + S ++ + A+L L ++
Sbjct: 184 FSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDT---KSALLSHLINE 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+ +IF TK A +L + A H +QA R + LE F+ + +L+AT
Sbjct: 241 QQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT-DNDRSLLKAIA 359
VAARG+DI + V+NY P YVHR+GRT RA G A++FV+ DN ++L I
Sbjct: 301 GVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM-IE 359
Query: 360 KRAGSKLKSRIV 371
R G ++ R+V
Sbjct: 360 SRLGHLIERRVV 371
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 132/372 (35%), Positives = 199/372 (53%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L LS L++ LGY KPT IQ IP+ L GRD+ +A TG+GKTA+F LP LE+L
Sbjct: 5 QLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKLR 64
Query: 62 Y-RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+ +R +R LIL PTRELA+QV +E+ + T ++ V GG+ + Q+ L
Sbjct: 65 QGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGV 124
Query: 121 DIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTML 180
D++VATPGR++D L + R+L++GF I++++ P Q +L
Sbjct: 125 DVLVATPGRLMD-LYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLL 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSK 240
FSATL+ V EL K ++ P +S + S ++ + A+L L ++
Sbjct: 184 FSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDT---KSALLSHLINE 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+ +IF TK A +L + A H +QA R + LE F+ + +L+AT
Sbjct: 241 QQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT-DNDRSLLKAIA 359
VAARG+DI + V+NY P YVHR+GRT RA G A++FV+ DN ++L I
Sbjct: 301 GVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM-IE 359
Query: 360 KRAGSKLKSRIV 371
R G ++ R+V
Sbjct: 360 SRLGHLIERRVV 371
>SGD|S000004903 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0008186 "RNA-dependent ATPase
activity" evidence=IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004903 GO:GO:0005524
GO:GO:0005635 GO:GO:0005730 GO:GO:0003723 EMBL:BK006946
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030686 GO:GO:0006364 GO:GO:0004004 EMBL:X80836
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 OrthoDB:EOG4ZKNVS
PIR:S47451 RefSeq:NP_014017.1 ProteinModelPortal:Q03532 SMR:Q03532
DIP:DIP-4396N IntAct:Q03532 MINT:MINT-482816 STRING:Q03532
PaxDb:Q03532 PeptideAtlas:Q03532 EnsemblFungi:YMR290C GeneID:855335
KEGG:sce:YMR290C CYGD:YMR290c NextBio:979064 Genevestigator:Q03532
GermOnline:YMR290C Uniprot:Q03532
Length = 505
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 130/390 (33%), Positives = 202/390 (51%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL LS+P L+A E +G++ T +QA IP L GRD+ G+A TGSGKT AF +P +E LL
Sbjct: 46 ELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE-LL 104
Query: 62 YRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
+ K P ++++TPTRELA+Q+ + ++ +F +V+GG + + + L
Sbjct: 105 HSLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLMKG 164
Query: 120 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKR-RQT 178
++++ATPGR++DHL+N+ R+LE+GF E+ +++++ P RQ+
Sbjct: 165 VNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNEDRQS 224
Query: 179 MLFSATLTEDVDELIKLSLTK-PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 237
MLFSAT T V++L ++SL PL ++ P ST + +L S
Sbjct: 225 MLFSATQTTKVEDLARISLRPGPLFINVVPETDN-STADGLEQGYVVCDSDKRFLLLFSF 283
Query: 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
+ K+I+F + + L L ELHG Q +R F L
Sbjct: 284 LKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGIL 343
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR-EGYAVTFVTDNDRSLLK 356
I TDVAARGLDI V +I + P D Y+HRVGRTAR + +G ++ F+T N+ L+
Sbjct: 344 ICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNELGFLR 403
Query: 357 AIAKRAGSKLKSRIVAEQSITKWSKIIEQM 386
+ K + L E I +E++
Sbjct: 404 YL-KASKVPLNEYEFPENKIANVQSQLEKL 432
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 134/386 (34%), Positives = 206/386 (53%)
Query: 17 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVL--I 74
G++ PT IQ+A PL GRD+ G A TGSGKT AF LP L+++L + + R L +
Sbjct: 92 GFASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVLDLKTKQKSCRPLAVV 151
Query: 75 LTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHL 134
++PTRELA+Q++ + K A+ DI+ + GG+ Q AL+S +VVATPGR+ D L
Sbjct: 152 ISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQREALKSAA-VVVATPGRLKD-L 209
Query: 135 RNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP-KRRQTMLFSATLTEDVDELI 193
+N S R+L+ GF +I +++ P +RQT++F+AT V L
Sbjct: 210 QNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVSKRQTVMFTATWPPIVRNLA 269
Query: 194 KLSLTKPLRLS--ADPSAK-RPSTLTXXXXXXXXXXXXNQEAV-LLSLCSKTFTSKVIIF 249
+T P+ ++ DPSA R ++ Q V +L+ + KV+ F
Sbjct: 270 STFMTSPVTVTIGGDPSADPRANSRIKQVVEVVKPHEKEQRLVQILNRHQRGTPDKVLAF 329
Query: 250 SGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI 309
K+ A R++ L K A +HG+L+Q +R +LE F+ L+ATDVAARGLDI
Sbjct: 330 CLYKKEAMRVERLLRTKGFKVAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAARGLDI 389
Query: 310 IGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSR 369
V+ V+N P + YVHR+GRT RAG +G+A+T T+ D++ A+ K ++
Sbjct: 390 PHVKLVVNVTFPLTVEDYVHRIGRTGRAGADGHAITLFTETDKAQSGALINVL--KAANQ 447
Query: 370 IVAEQSITKWSKIIEQMEDQVAAILQ 395
V E + S + ++ D A +
Sbjct: 448 EVPEALLKFGSTVKKKQHDAYGAFFK 473
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 129/360 (35%), Positives = 187/360 (51%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + +LRA +GY PT IQAA IP + G D+ G A TG+GKTAAFA+P L ++
Sbjct: 17 DLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKID 76
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKI-AQFTDIRCCLVVGGLSTKMQETALRSMP 120
K +P + L+L PTRELA+QV + A + + + GG S +Q LR
Sbjct: 77 ITSK-VP--QALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGA 133
Query: 121 DIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTML 180
+VV TPGRMIDHL + + +L +GF+ ++ ++ P+ +Q L
Sbjct: 134 QVVVGTPGRMIDHLERA-TLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVAL 192
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSK 240
FSAT+ + +L L P ++ K + + +A+ L +
Sbjct: 193 FSATMPPAIRKLSAKYLHDPFEVTC----KAKTAVAENISQSYIQVARKMDALTRVLEVE 248
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
F + +I+F TKQA + AA + G++ QAQR + R +D L+AT
Sbjct: 249 PFEA-MIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVAT 307
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ + V+NY P D SYVHR+GRT RAGR G A+ FV+ + LLKAI K
Sbjct: 308 DVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEK 367
>UNIPROTKB|E1BGI6 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030331 "estrogen receptor binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:DAAA02045421
IPI:IPI00690851 Ensembl:ENSBTAT00000029525 Uniprot:E1BGI6
Length = 877
Score = 517 (187.1 bits), Expect = 2.1e-50, Sum P(2) = 2.1e-50
Identities = 126/351 (35%), Positives = 180/351 (51%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+ LS P+ + GY PTPIQ IP+ L G+D+ A TGSGKTA F +P ERL
Sbjct: 101 MGLSYPVFKGIMKKGYKVPTPIQRKTIPMILDGKDVVAMARTGSGKTACFLIPMFERLKT 160
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+ A R LIL+PTRELA+Q +++ +FT ++ L++GG + Q AL PDI
Sbjct: 161 HSAQTGA-RALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDI 219
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR++ H+ M+ RL E+GF+ ++ E++ P QT+LFS
Sbjct: 220 IIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVLFS 278
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTF 242
ATL + + E + LT+P+ + D +K L + AVLL L
Sbjct: 279 ATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFFLVREDA---KAAVLLHLLRNVV 335
Query: 243 T--SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+ ++F TK A L L + A ++ L Q R L F LI T
Sbjct: 336 RPQDQTVVFVATKHHAEYLSELLATQGVSCAHIYSALDQTARKINLARFTHGKCSALIVT 395
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
D+AARGLDI + VINY+ P ++HRVGR ARAGR G A + V ++
Sbjct: 396 DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDE 446
Score = 38 (18.4 bits), Expect = 2.1e-50, Sum P(2) = 2.1e-50
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 576 EKKQKR-TGGIGKKPKHSFKSKS-RY 599
++K+KR G G++ K K++S RY
Sbjct: 728 DRKKKRFVGQSGQEDKKKIKTESGRY 753
Score = 37 (18.1 bits), Expect = 2.7e-50, Sum P(2) = 2.7e-50
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 544 IVKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKP 589
I + N SSQ ++ ++ R+ S +++++ G G P
Sbjct: 575 IFEINASSRDLSSQVMRAKREKDRKAIASFQQGRQERQEGPAGPTP 620
>ASPGD|ASPL0000072637 [details] [associations]
symbol:AN4903 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:BN001303 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000084 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 RefSeq:XP_662507.1 ProteinModelPortal:Q5B3H7
EnsemblFungi:CADANIAT00005498 GeneID:2872706 KEGG:ani:AN4903.2
HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW Uniprot:Q5B3H7
Length = 525
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 142/378 (37%), Positives = 194/378 (51%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
LN++ L+ + + KPT IQ ACIP L GRD G + TGSGKT AF++P L++
Sbjct: 100 LNVAPWLVGSLTTMAVRKPTAIQRACIPEILKGRDCIGGSRTGSGKTIAFSVPILQKWAE 159
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P I A+ ILTPTRELA+Q+ I+ I+ ++ L+ GG + Q L P +
Sbjct: 160 DPFGIFAV---ILTPTRELALQIFEQIKAISAPQSMKPVLITGGTDMRSQAIELAGRPHV 216
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXX---XXRLLELGFSAEIHELVRLC------P 173
VVATPGR+ DH+ S + RLL G + + + V C P
Sbjct: 217 VVATPGRLADHINTSGTDTVAGLKRVRMVVLDEADRLLSPGPGSMLPD-VETCLSFLPGP 275
Query: 174 KRRQTMLFSATLTEDVDELIKLSLT--KPLRLSADPSAKRPSTLTXXXXXXXXXX-XXNQ 230
+RQT+LF+ATLT +V L + T KP + S + T+ ++
Sbjct: 276 SQRQTLLFTATLTPEVRALKSMPQTPGKPPIFVTEISTEAKDTVPPTLRTTYVQVPLTHR 335
Query: 231 EAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALEL 288
EA L L S T I+F+ T ++A L+ L + LH L Q++R L
Sbjct: 336 EAFLHVLLSTESNITKSAIVFTNTTKSADLLERLLRSLGHRVTSLHSLLPQSERNSNLAR 395
Query: 289 FRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 348
FR L+ATDVA+RGLDI V V+N+ PR+ YVHRVGRTARAGR G AVT V
Sbjct: 396 FRASAARVLVATDVASRGLDIPSVSLVVNFEVPRNPDDYVHRVGRTARAGRTGEAVTLVG 455
Query: 349 DNDRSLLKAIAKRAGSKL 366
D L+ AI +R G K+
Sbjct: 456 QRDVQLVLAIEERIGRKM 473
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 128/362 (35%), Positives = 191/362 (52%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ +L + LL++ + +G + PT IQ +P+AL G+D+ S+ TGSGKT AF LP L+R++
Sbjct: 5 DFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVI 64
Query: 62 YR---PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
KR P RVLIL PTRELA QV+S + + T + V+GG + Q AL
Sbjct: 65 STRALSKRDP--RVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAK 122
Query: 119 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP-KRRQ 177
P +VATPGR+ DHL + R+L+LGF+ ++ + KRRQ
Sbjct: 123 EPHFIVATPGRIADHLEQK-NLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKRRQ 181
Query: 178 TMLFSATLTE-DVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS 236
T++FSATL +++E+ L PL ++ + ++ ++EA+L
Sbjct: 182 TLMFSATLDHSEINEIAAALLKNPLHVAIGTAHAEHQDISQRIYLCDHLD--HKEALLSR 239
Query: 237 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 296
L S +VIIF+ T+ RL A L G L QA R + ++ F +
Sbjct: 240 LLSDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQQI 299
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 356
L+ TDVA+RGLD++ V VIN+ P+ YVHR+GRT RAG +G A++ V D K
Sbjct: 300 LVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDSFK 359
Query: 357 AI 358
+
Sbjct: 360 KV 361
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 128/362 (35%), Positives = 191/362 (52%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ +L + LL++ + +G + PT IQ +P+AL G+D+ S+ TGSGKT AF LP L+R++
Sbjct: 5 DFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVI 64
Query: 62 YR---PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
KR P RVLIL PTRELA QV+S + + T + V+GG + Q AL
Sbjct: 65 STRALSKRDP--RVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAK 122
Query: 119 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP-KRRQ 177
P +VATPGR+ DHL + R+L+LGF+ ++ + KRRQ
Sbjct: 123 EPHFIVATPGRIADHLEQK-NLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKRRQ 181
Query: 178 TMLFSATLTE-DVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS 236
T++FSATL +++E+ L PL ++ + ++ ++EA+L
Sbjct: 182 TLMFSATLDHSEINEIAAALLKNPLHVAIGTAHAEHQDISQRIYLCDHLD--HKEALLSR 239
Query: 237 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 296
L S +VIIF+ T+ RL A L G L QA R + ++ F +
Sbjct: 240 LLSDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQQI 299
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 356
L+ TDVA+RGLD++ V VIN+ P+ YVHR+GRT RAG +G A++ V D K
Sbjct: 300 LVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDSFK 359
Query: 357 AI 358
+
Sbjct: 360 KV 361
>UNIPROTKB|F1NAH6 [details] [associations]
symbol:LOC100859810 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0035458 "cellular response to interferon-beta" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
Length = 607
Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
Identities = 129/380 (33%), Positives = 194/380 (51%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E+ +LR + G +PTPIQ IP L+GRD+ G A TGSGKT F LP + L
Sbjct: 181 EMKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCL 240
Query: 62 YRPKRIPAIRV-----LILTPTRELAVQVHSMIE---KIAQ---FTDIRCCLVVGGLSTK 110
+ KR+P + LI+ P+RELA Q H +IE ++ Q +RC L +GG+S K
Sbjct: 241 EQEKRLPFSKREGPYGLIICPSRELARQTHGIIEYYCRLLQEDSLPPLRCALCIGGMSVK 300
Query: 111 MQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVR 170
Q ++ ++VATPGR++D L+ M R++++GF +I +
Sbjct: 301 EQMETIKHGVHMMVATPGRLMDLLQKKM-VSLDICRYLALDEADRMIDMGFEGDIRTIFS 359
Query: 171 LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQ 230
+RQT+LFSAT+ + + K +L KP+ ++ R +
Sbjct: 360 YFKGQRQTLLFSATMPKKIQNFAKSALVKPITINVG----RAGAASLDVVQEVEYVKEEA 415
Query: 231 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 290
+ V L C + V+IF+ K + L ++A +HG Q +R +A+E FR
Sbjct: 416 KMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFR 475
Query: 291 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 350
D L+ATDVA++GLD +Q VINY P ++ +YVHR+GRT R+G G A TF+
Sbjct: 476 DGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKA 535
Query: 351 -DRSLL---KAIAKRAGSKL 366
D S+L KA+ A K+
Sbjct: 536 CDESVLMDLKALLLEAKQKV 555
>RGD|1311758 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
"defense response to virus" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
Uniprot:B2RYL8
Length = 622
Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
Identities = 129/380 (33%), Positives = 193/380 (50%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E+ L +LR + G PTPIQ IP L+GRD+ G A TGSGKT F LP + L
Sbjct: 185 EMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCL 244
Query: 62 YRPKRIPAIRV-----LILTPTRELAVQVHSMIEKIAQFTD------IRCCLVVGGLSTK 110
+ KR+P + LI+ P+RELA Q H ++E + +RC L +GG+S K
Sbjct: 245 EQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVK 304
Query: 111 MQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVR 170
Q +R ++VATPGR++D L+ M R++++GF +I +
Sbjct: 305 EQMETIRHGVHMMVATPGRLMDLLQKKM-VSLDICRYLALDEADRMIDMGFEGDIRTIFS 363
Query: 171 LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQ 230
+RQT+LFSAT+ + + K +L KP+ ++ R +
Sbjct: 364 YFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVG----RAGAASLDVIQEVEYVKEEA 419
Query: 231 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 290
+ V L C + V+IF+ K + L ++A +HG Q +R +A+E FR
Sbjct: 420 KMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFR 479
Query: 291 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 350
+ D L+ATDVA++GLD +Q VINY P ++ +YVHR+GRT R+G G A TF+
Sbjct: 480 EGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKA 539
Query: 351 -DRSLL---KAIAKRAGSKL 366
D S+L KA+ A K+
Sbjct: 540 CDESVLMDLKALLLEAKQKV 559
>UNIPROTKB|A4RGU2 [details] [associations]
symbol:DBP4 "ATP-dependent RNA helicase DBP4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 GO:GO:0043581 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM001232 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 OrthoDB:EOG4R53B0
RefSeq:XP_003715000.1 ProteinModelPortal:A4RGU2 STRING:A4RGU2
EnsemblFungi:MGG_08049T0 GeneID:2678339 KEGG:mgr:MGG_08049
Uniprot:A4RGU2
Length = 798
Score = 506 (183.2 bits), Expect = 7.6e-50, Sum P(2) = 7.6e-50
Identities = 132/367 (35%), Positives = 189/367 (51%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL LS P + + T IQA IPLAL GRDI G+A TGSGKT AF +P LE+L
Sbjct: 53 ELPLSEPTAKGVRDSHFETLTDIQARAIPLALKGRDILGAAKTGSGKTLAFLVPLLEKL- 111
Query: 62 YRPKRIPAIRV--LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
YR + ++ L+L+PTRELAVQ ++ KI + LV+GG S + + AL M
Sbjct: 112 YREQWTQEAKLGALVLSPTRELAVQTFQVLRKIGRHHLFSAGLVIGGKSVREEAEALSRM 171
Query: 120 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTM 179
+I++ TPGR++ HL + R+++LGF ++ LV+ P RQT+
Sbjct: 172 -NILIGTPGRILQHLDQTHGFDVDNLQLLVLDEADRIMDLGFQRDVDALVQHLPTTRQTL 230
Query: 180 LFSATLTEDVDELIKLSLTKPLRLS--ADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 237
LFSAT ++ V +L +LSL P +S A+ + PSTL + L
Sbjct: 231 LFSATQSKKVSDLARLSLKDPEYVSVHAEATTATPSTLQQHYIVTPLPEKLD---TLWGF 287
Query: 238 CSKTFTSKVIIF-SGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQHVD 295
SK+++F S KQ + + + +HG Q RL+ + F
Sbjct: 288 IKANLKSKMVVFLSSGKQVRFVYESFRQMQPGIPLLHMHGRQKQLARLDVTKRFDSSKHA 347
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS-L 354
L ATDV ARG+D GV V+ P D Y+HRVGRTAR REG AV F+ ++ + +
Sbjct: 348 CLFATDVIARGIDFTGVDWVVQVDAPEDTDDYIHRVGRTARYEREGKAVIFLDPSEEAGM 407
Query: 355 LKAIAKR 361
LK + ++
Sbjct: 408 LKRLERK 414
Score = 40 (19.1 bits), Expect = 7.6e-50, Sum P(2) = 7.6e-50
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 436 KEKKLAVKADKASIEKGKGSGN 457
K+KK K + + E+G+ GN
Sbjct: 691 KQKKREKKLKRKARERGEAEGN 712
>UNIPROTKB|A3KN07 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
Length = 622
Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 128/380 (33%), Positives = 192/380 (50%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E+ +LR + G PTPIQ IP L+GRD+ G A TGSGKT F LP + L
Sbjct: 185 EMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCL 244
Query: 62 YRPKRIPAIRV-----LILTPTRELAVQVHSMIEKIAQFTD------IRCCLVVGGLSTK 110
+ KR+P + LI+ P+RELA Q H ++E + +RC L +GG+S K
Sbjct: 245 EQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVK 304
Query: 111 MQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVR 170
Q +R ++VATPGR++D L+ M R++++GF +I +
Sbjct: 305 EQMETIRHGVHMMVATPGRLMDLLQKKM-VSLDICRYLALDEADRMIDMGFEGDIRTIFS 363
Query: 171 LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQ 230
+RQT+LFSAT+ + + K +L KP+ ++ R +
Sbjct: 364 YFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVG----RAGAASLDVIQEVEYVKEEA 419
Query: 231 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 290
+ V L C + V+IF+ K + L ++A +HG Q +R +A+E FR
Sbjct: 420 KMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFR 479
Query: 291 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 350
+ D L+ATDVA++GLD +Q VINY P ++ +YVHR+GRT R+G G A TF+
Sbjct: 480 EGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKA 539
Query: 351 -DRSLL---KAIAKRAGSKL 366
D S+L KA+ A K+
Sbjct: 540 CDESVLMDLKALLLEAKQKV 559
>UNIPROTKB|E2R052 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
RefSeq:XP_536417.2 ProteinModelPortal:E2R052
Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
NextBio:20854482 Uniprot:E2R052
Length = 622
Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 128/380 (33%), Positives = 192/380 (50%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E+ +LR + G PTPIQ IP L+GRD+ G A TGSGKT F LP + L
Sbjct: 185 EMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCL 244
Query: 62 YRPKRIPAIRV-----LILTPTRELAVQVHSMIEKIAQFTD------IRCCLVVGGLSTK 110
+ KR+P + LI+ P+RELA Q H ++E + +RC L +GG+S K
Sbjct: 245 EQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVK 304
Query: 111 MQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVR 170
Q +R ++VATPGR++D L+ M R++++GF +I +
Sbjct: 305 EQMETIRHGVHMMVATPGRLMDLLQKKM-VSLDICRYLALDEADRMIDMGFEGDIRTIFS 363
Query: 171 LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQ 230
+RQT+LFSAT+ + + K +L KP+ ++ R +
Sbjct: 364 YFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVG----RAGAASLDVIQEVEYVKEEA 419
Query: 231 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 290
+ V L C + V+IF+ K + L ++A +HG Q +R +A+E FR
Sbjct: 420 KMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFR 479
Query: 291 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 350
+ D L+ATDVA++GLD +Q VINY P ++ +YVHR+GRT R+G G A TF+
Sbjct: 480 EGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKA 539
Query: 351 -DRSLL---KAIAKRAGSKL 366
D S+L KA+ A K+
Sbjct: 540 CDESVLMDLKALLLEAKQKV 559
>UNIPROTKB|J9NZF6 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
Length = 649
Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 128/380 (33%), Positives = 192/380 (50%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E+ +LR + G PTPIQ IP L+GRD+ G A TGSGKT F LP + L
Sbjct: 212 EMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCL 271
Query: 62 YRPKRIPAIRV-----LILTPTRELAVQVHSMIEKIAQFTD------IRCCLVVGGLSTK 110
+ KR+P + LI+ P+RELA Q H ++E + +RC L +GG+S K
Sbjct: 272 EQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVK 331
Query: 111 MQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVR 170
Q +R ++VATPGR++D L+ M R++++GF +I +
Sbjct: 332 EQMETIRHGVHMMVATPGRLMDLLQKKM-VSLDICRYLALDEADRMIDMGFEGDIRTIFS 390
Query: 171 LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQ 230
+RQT+LFSAT+ + + K +L KP+ ++ R +
Sbjct: 391 YFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVG----RAGAASLDVIQEVEYVKEEA 446
Query: 231 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 290
+ V L C + V+IF+ K + L ++A +HG Q +R +A+E FR
Sbjct: 447 KMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFR 506
Query: 291 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 350
+ D L+ATDVA++GLD +Q VINY P ++ +YVHR+GRT R+G G A TF+
Sbjct: 507 EGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKA 566
Query: 351 -DRSLL---KAIAKRAGSKL 366
D S+L KA+ A K+
Sbjct: 567 CDESVLMDLKALLLEAKQKV 586
>UNIPROTKB|J3KNN5 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
Ensembl:ENST00000330503 Uniprot:J3KNN5
Length = 640
Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 128/380 (33%), Positives = 192/380 (50%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E+ +LR + G PTPIQ IP L+GRD+ G A TGSGKT F LP + L
Sbjct: 203 EMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCL 262
Query: 62 YRPKRIPAIRV-----LILTPTRELAVQVHSMIEKIAQFTD------IRCCLVVGGLSTK 110
+ KR+P + LI+ P+RELA Q H ++E + +RC L +GG+S K
Sbjct: 263 EQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVK 322
Query: 111 MQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVR 170
Q +R ++VATPGR++D L+ M R++++GF +I +
Sbjct: 323 EQMETIRHGVHMMVATPGRLMDLLQKKM-VSLDICRYLALDEADRMIDMGFEGDIRTIFS 381
Query: 171 LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQ 230
+RQT+LFSAT+ + + K +L KP+ ++ R +
Sbjct: 382 YFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVG----RAGAASLDVIQEVEYVKEEA 437
Query: 231 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 290
+ V L C + V+IF+ K + L ++A +HG Q +R +A+E FR
Sbjct: 438 KMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFR 497
Query: 291 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 350
+ D L+ATDVA++GLD +Q VINY P ++ +YVHR+GRT R+G G A TF+
Sbjct: 498 EGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKA 557
Query: 351 -DRSLL---KAIAKRAGSKL 366
D S+L KA+ A K+
Sbjct: 558 CDESVLMDLKALLLEAKQKV 577
>UNIPROTKB|Q9UJV9 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
"cellular response to interferon-beta" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
Length = 622
Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 128/380 (33%), Positives = 192/380 (50%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E+ +LR + G PTPIQ IP L+GRD+ G A TGSGKT F LP + L
Sbjct: 185 EMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCL 244
Query: 62 YRPKRIPAIRV-----LILTPTRELAVQVHSMIEKIAQFTD------IRCCLVVGGLSTK 110
+ KR+P + LI+ P+RELA Q H ++E + +RC L +GG+S K
Sbjct: 245 EQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVK 304
Query: 111 MQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVR 170
Q +R ++VATPGR++D L+ M R++++GF +I +
Sbjct: 305 EQMETIRHGVHMMVATPGRLMDLLQKKM-VSLDICRYLALDEADRMIDMGFEGDIRTIFS 363
Query: 171 LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQ 230
+RQT+LFSAT+ + + K +L KP+ ++ R +
Sbjct: 364 YFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVG----RAGAASLDVIQEVEYVKEEA 419
Query: 231 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 290
+ V L C + V+IF+ K + L ++A +HG Q +R +A+E FR
Sbjct: 420 KMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFR 479
Query: 291 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 350
+ D L+ATDVA++GLD +Q VINY P ++ +YVHR+GRT R+G G A TF+
Sbjct: 480 EGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKA 539
Query: 351 -DRSLL---KAIAKRAGSKL 366
D S+L KA+ A K+
Sbjct: 540 CDESVLMDLKALLLEAKQKV 559
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 141/389 (36%), Positives = 202/389 (51%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL- 61
+ LS LL+A +A GY TPIQ IP+ G D+ SA TG+GKTAAF+LP L+ +
Sbjct: 6 IGLSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILDAIAK 65
Query: 62 --YRPKRIP----------------AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV 103
+ K AIR LILTPTRELA QV I++ +Q+ I+ +V
Sbjct: 66 ANHAAKSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLPIKSGVV 125
Query: 104 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSA 163
GG Q L+ D++VATPGR+++HL + R+L++GF
Sbjct: 126 YGGGKMASQTKMLKQGLDVLVATPGRLLEHLA-LRNVDLSQVKFLVLDEADRMLDMGFLT 184
Query: 164 EIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXX 223
+I +L+ + QT++FSAT ++ V L L P +S +K +T
Sbjct: 185 DIEKLLLAVKHKHQTLMFSATFSDRVKSLANQLLKSPKTISV---SKENTTSGKIKQAVY 241
Query: 224 XXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRL 283
+ +L L +V++F+GTK++A+ L L +KAA HG+ TQ R
Sbjct: 242 WVTEERKRELLSELIGVNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARN 301
Query: 284 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYA 343
+ALE F + V L+ATDVAARGLDI + V+N+ P YVHRVGRT RAG+ G A
Sbjct: 302 KALEQFSEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTA 361
Query: 344 VTFVTDNDRSLLKAIAKRAGSKLKSRIVA 372
++ V+ D L+ I + K + RIVA
Sbjct: 362 ISLVSPKDERFLENIEQLIERKFE-RIVA 389
>MGI|MGI:1920185 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
CleanEx:MM_DDX41 Genevestigator:Q91VN6
GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
Length = 622
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 128/380 (33%), Positives = 192/380 (50%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E+ +LR + G PTPIQ IP L+GRD+ G A TGSGKT F LP + L
Sbjct: 185 EMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCL 244
Query: 62 YRPKRIPAIRV-----LILTPTRELAVQVHSMIEKIAQFTD------IRCCLVVGGLSTK 110
+ KR+P + LI+ P+RELA Q H ++E + +RC L +GG+S K
Sbjct: 245 EQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVK 304
Query: 111 MQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVR 170
Q +R ++VATPGR++D L+ M R++++GF +I +
Sbjct: 305 EQMETIRHGVHMMVATPGRLMDLLQKKM-VSLDICRYLALDEADRMIDMGFEGDIRTIFS 363
Query: 171 LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQ 230
+RQT+LFSAT+ + + K +L KP+ ++ R +
Sbjct: 364 YFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVG----RAGAASLDVIQEVEYVKEEA 419
Query: 231 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 290
+ V L C + V+IF+ K + L ++A +HG Q +R +A+E FR
Sbjct: 420 KMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFR 479
Query: 291 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 350
+ D L+ATDVA++GLD +Q VINY P ++ +YVHR+GRT R+G G A TF+
Sbjct: 480 EGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKA 539
Query: 351 -DRSLL---KAIAKRAGSKL 366
D S+L KA+ A K+
Sbjct: 540 CDESVLMDLKALLLEAKQKV 559
>RGD|1559513 [details] [associations]
symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
NextBio:667517 Uniprot:D4ADJ9
Length = 621
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 129/380 (33%), Positives = 192/380 (50%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E+ L +LR + G PTPIQ IP L+GRD+ G A TGSGKT F LP + L
Sbjct: 184 EMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCL 243
Query: 62 YRPKRIPAIRV-----LILTPTRELAVQVHSMIEKIAQFTD------IRCCLVVGGLSTK 110
+ KR+P + LI+ P+RELA Q H ++E + + C L +GG+S K
Sbjct: 244 EQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLHCALCIGGVSLK 303
Query: 111 MQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVR 170
Q +R I+VATPGR++D L+ M R++++GF +I +
Sbjct: 304 EQMETMRHGVHIMVATPGRLMDLLQKKM-VSLDICRYLALDEADRMIDMGFEGDIRTIFS 362
Query: 171 LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQ 230
+RQT+LFSAT+ + + K +L KP+ ++ R +
Sbjct: 363 YFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVG----RAGAASLDVIQEVEYVKEEA 418
Query: 231 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 290
+ V L C + V+IF+ K + L ++A +HG Q +R +A+E FR
Sbjct: 419 KMVYLLECLQKTPPPVLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFR 478
Query: 291 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 350
+ D L+ATDVA++GLD +Q VINY P ++ +YVHR+GRT R+G G A TF+
Sbjct: 479 EGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKA 538
Query: 351 -DRSLL---KAIAKRAGSKL 366
D S+L KA+ A K+
Sbjct: 539 CDESVLMDLKALLLEAKQKV 558
>TIGR_CMR|GSU_0189 [details] [associations]
symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
Uniprot:Q74GQ7
Length = 460
Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
Identities = 130/363 (35%), Positives = 182/363 (50%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L P+LR +LGY++ TPIQA +PL L G+D+ A TGSGKTAAF + L RL
Sbjct: 9 LRLKAPMLRNLASLGYAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGIGLLSRLDA 68
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD-IRCCLVVGGLSTKMQETALRSMPD 121
R+ A L+L PTRELA QV + ++A+FTD I+ + GG+ Q +L
Sbjct: 69 LSFRVQA---LVLCPTRELADQVGKELRRLARFTDNIKILTICGGVPFGPQLGSLEHGAH 125
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
+V+ TPGR++DHLR S R+L++GF +I L+ P +RQT+LF
Sbjct: 126 VVIGTPGRLLDHLRRG-SLDLSALRTLVLDEADRMLDMGFQDDISALIAAAPPKRQTLLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT + + + +P+ +S D + E +L
Sbjct: 185 SATYPDSIAAMSAGVQREPVEVSVDEVHGEGAIEQVFYEVDSGQRIEAVERIL----GHY 240
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+IF TK + + A +HG+L Q +R L F + L+ATD
Sbjct: 241 RPESALIFCNTKLECQEVANALAVRGYAALAIHGDLDQRERDRVLVRFANRSASVLVATD 300
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI + VINY R+ + HR+GRT RAG G AV+ VT + L+ AIA
Sbjct: 301 VAARGLDIKELSAVINYELTRNPEVHTHRIGRTGRAGERGLAVSLVTPRESRLIAAIADV 360
Query: 362 AGS 364
GS
Sbjct: 361 PGS 363
>UNIPROTKB|Q8TDD1 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=IDA] [GO:0005102
"receptor binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006396
"RNA processing" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0030520 "intracellular estrogen receptor signaling pathway"
evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 GO:GO:0030520 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
EMBL:AF478457 EMBL:AC089999 EMBL:AY148094 EMBL:BC005848
IPI:IPI00152510 IPI:IPI00879999 RefSeq:NP_001104792.1
RefSeq:NP_076977.3 UniGene:Hs.506861 ProteinModelPortal:Q8TDD1
SMR:Q8TDD1 IntAct:Q8TDD1 STRING:Q8TDD1 PhosphoSite:Q8TDD1
DMDM:46576615 SWISS-2DPAGE:Q8TDD1 PaxDb:Q8TDD1 PRIDE:Q8TDD1
DNASU:79039 Ensembl:ENST00000306014 Ensembl:ENST00000314045
GeneID:79039 KEGG:hsa:79039 UCSC:uc001tup.3 UCSC:uc001tuq.4
CTD:79039 GeneCards:GC12M113595 HGNC:HGNC:20084 HPA:HPA028244
MIM:611665 neXtProt:NX_Q8TDD1 PharmGKB:PA134992026
HOVERGEN:HBG051333 InParanoid:Q8TDD1 ChiTaRS:DDX54 GenomeRNAi:79039
NextBio:67773 ArrayExpress:Q8TDD1 Bgee:Q8TDD1 CleanEx:HS_DDX54
Genevestigator:Q8TDD1 GermOnline:ENSG00000123064 Uniprot:Q8TDD1
Length = 881
Score = 508 (183.9 bits), Expect = 2.2e-49, Sum P(2) = 2.2e-49
Identities = 127/351 (36%), Positives = 178/351 (50%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+ LS P+ + GY PTPIQ IP+ L G+D+ A TGSGKTA F LP ERL
Sbjct: 101 MGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKT 160
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+ A R LIL+PTRELA+Q +++ +FT ++ L++GG + Q AL PDI
Sbjct: 161 HSAQTGA-RALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPDI 219
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR++ H+ MS RL E+GF+ ++ E++ P QT+LFS
Sbjct: 220 IIATPGRLV-HVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVLFS 278
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTF 242
ATL + + E + LT+P+ + D K L + AVLL L
Sbjct: 279 ATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDT---KAAVLLHLLHNVV 335
Query: 243 T--SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+ ++F TK A L L + A ++ L R L F LI T
Sbjct: 336 RPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVT 395
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
D+AARGLDI + VINY+ P ++HRVGR ARAGR G A + V ++
Sbjct: 396 DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDE 446
Score = 38 (18.4 bits), Expect = 2.2e-49, Sum P(2) = 2.2e-49
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 576 EKKQKR-TGGIGKKPKHSFKSKS-RY 599
++K+KR G G++ K K++S RY
Sbjct: 733 DRKKKRFVGQSGQEDKKKIKTESGRY 758
Score = 38 (18.4 bits), Expect = 2.2e-49, Sum P(2) = 2.2e-49
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 551 KSKHSSQESNSRAKEMRELFHSDMSEKKQKRTG 583
+ K +E A E E S++ +K++R+G
Sbjct: 629 QEKQPEKEEEEEAGESVEDIFSEVVGRKRQRSG 661
>MGI|MGI:1919240 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016070 "RNA metabolic process" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1919240 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
GeneTree:ENSGT00550000075100 CTD:79039 HOVERGEN:HBG051333
EMBL:AF319547 EMBL:BC043699 IPI:IPI00875042 RefSeq:NP_082317.1
UniGene:Mm.24495 ProteinModelPortal:Q8K4L0 SMR:Q8K4L0 STRING:Q8K4L0
PhosphoSite:Q8K4L0 PaxDb:Q8K4L0 PRIDE:Q8K4L0
Ensembl:ENSMUST00000031598 GeneID:71990 KEGG:mmu:71990
UCSC:uc008zhq.1 NextBio:335150 Bgee:Q8K4L0 CleanEx:MM_DDX54
Genevestigator:Q8K4L0 Uniprot:Q8K4L0
Length = 874
Score = 520 (188.1 bits), Expect = 2.9e-49, P = 2.9e-49
Identities = 129/352 (36%), Positives = 184/352 (52%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+ LS P+ + GY PTPIQ IP+ L G+D+ A TGSGKTA F LP ERL
Sbjct: 100 MGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKA 159
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
R + A R LIL+PTRELA+Q +++ +FT ++ L++GG + Q AL PDI
Sbjct: 160 RSAQTGA-RALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDI 218
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR++ H+ M+ RL E+GF+ ++ E++ P QT+LFS
Sbjct: 219 IIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVLFS 277
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTF 242
ATL + + E + LT+P+ + D +K L + AVLL L
Sbjct: 278 ATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFLLVREDT---KAAVLLYLLQNVV 334
Query: 243 T--SKVIIFSGTKQAAHRL-KILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+ ++F TK A L ++L G + A ++ L Q R L F LI
Sbjct: 335 RPQDQTVVFVATKHHAEYLTELLMG-QGVSCAHIYSALDQTARKINLAKFTHNKCSTLIV 393
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
TD+AARGLDI + VINY+ P ++HRVGR ARAGR G A + V ++
Sbjct: 394 TDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDE 445
>WB|WBGene00022378 [details] [associations]
symbol:Y94H6A.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0040010 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:FO081810
GeneID:177054 KEGG:cel:CELE_Y94H6A.5 UCSC:Y94H6A.5a CTD:177054
NextBio:895136 RefSeq:NP_741347.2 ProteinModelPortal:Q688Z4
SMR:Q688Z4 STRING:Q688Z4 PRIDE:Q688Z4 EnsemblMetazoa:Y94H6A.5b
WormBase:Y94H6A.5b InParanoid:Q688Z4 ArrayExpress:Q688Z4
Uniprot:Q688Z4
Length = 871
Score = 502 (181.8 bits), Expect = 3.5e-49, Sum P(2) = 3.5e-49
Identities = 121/395 (30%), Positives = 207/395 (52%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++ L + +A E G+++PTPIQ IP + G+D+ + TGSGKTAAF +P L++L
Sbjct: 28 QIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQKLK 87
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
R IR L+++PTRELA+Q +++++ +FT +RC +VGG + Q + + PD
Sbjct: 88 RRDTT--GIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHENPD 145
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++ H+ M RL E+GF ++ E ++ P+ RQT+LF
Sbjct: 146 ILLATPGRLL-HVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRIPESRQTLLF 204
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SATL + + + K LT P+ + D K L+ + LL LC +
Sbjct: 205 SATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMVFCMCRPD---EKLFALLHLCRRM 261
Query: 242 F--TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+ ++F T + + + A + + ++ L R ++ F ++ + L+
Sbjct: 262 DRENKQTVVFCATMKHVEYVVGILHRAGIDCSFVYSQLDATARKMNIQKFHEKQNNILVV 321
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVAARG+DI + TVIN P +VHRVGR ARAGR G A++ + +++ L +
Sbjct: 322 TDVAARGVDIPLLDTVINLHFPPKAKLFVHRVGRVARAGRSGTAISLIANDELPYLTDLF 381
Query: 360 KRAGSKLKSRIVAEQSITKWSK-IIEQMEDQVAAI 393
G + +++S K + +I ++ D + ++
Sbjct: 382 MFLGKPIN--FASDKSEYKEDETLIGRVPDSIVSL 414
Score = 42 (19.8 bits), Expect = 3.5e-49, Sum P(2) = 3.5e-49
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 545 VKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKH 591
+K++G K + S+ K +F + S+K Q K+ H
Sbjct: 475 LKADGDKQSNDILNKISQYKSRNTIFEMNKSQKSQALAVMQAKRKAH 521
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
Identities = 124/343 (36%), Positives = 186/343 (54%)
Query: 18 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 77
+ KPTPIQA P L+G+D+ G A TGSGKT AF +P + L+ K+ I+VL+++P
Sbjct: 132 FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKK-RGIQVLVISP 190
Query: 78 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS 137
TRELA Q++ + + ++CC V GG+ Q L+ +VVATPGR++D L+
Sbjct: 191 TRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKKS-QVVVATPGRLLDLLQEG 249
Query: 138 MSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP-KRRQTMLFSATLTEDVDELIKLS 196
S R+LE GF +I ++R +RQT++F+AT ++V EL
Sbjct: 250 -SVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTF 308
Query: 197 LTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTS-----KVIIFSG 251
+ P+++S + + + +E LL L K + KV+IF+
Sbjct: 309 MNNPIKVSIGNTDQLTAN-KRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFAL 367
Query: 252 TKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG 311
K+ A R++ A +HG+L+Q QR +AL F+ + L+ATDVAARGLDI
Sbjct: 368 YKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPN 427
Query: 312 VQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 354
V+TVIN P + YVHR+GRT RAG+ G A T T+ ++ L
Sbjct: 428 VKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQEKHL 470
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 490 (177.5 bits), Expect = 4.2e-49, Sum P(2) = 4.2e-49
Identities = 127/352 (36%), Positives = 179/352 (50%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L LL ++GY++ TPIQA +P L G D+ G TGSGKTAAF L L +L
Sbjct: 6 LKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKL-- 63
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ-FTDIRCCLVVGGLSTKMQETALRSMPD 121
KR I+ L+L PTRELA QV I +A+ +++ + GG+ Q +L
Sbjct: 64 DVKRF-RIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGAH 122
Query: 122 IVVATPGRMIDHL-RNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTML 180
I+V TPGR++DHL RN + R+LE+GF ++ ++ P+ RQT+L
Sbjct: 123 IIVGTPGRIVDHLDRNRLDLSNLNMLVLDEAD--RMLEMGFQPQLDAIIEQSPRERQTLL 180
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSK 240
FSAT E + + K + P+ + A + ++ +T+ Q LL L K
Sbjct: 181 FSATFPEQIQSIAKQIMYNPVMVKAAVTHEK-NTIEQHFYQLDDDKSRMQALQLLLLEHK 239
Query: 241 TFTSKVIIFSGTKQAAHRLKI-LFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
++F TK+ ++ L GL LHG+L Q R E L F + L+A
Sbjct: 240 P--ESAVVFCNTKRETQKVADELEGLG-FSVLALHGDLEQRDRDETLLQFANKSACVLVA 296
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
TDVAARGLDI + V NY D ++HR+GRT RAG +G A TF D D
Sbjct: 297 TDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQD 348
Score = 39 (18.8 bits), Expect = 4.2e-49, Sum P(2) = 4.2e-49
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 334 TARAGREGYAV--TFVTDNDR--SLLKAIAKRAGSKLKSRIVAEQSITKW 379
T G EG V VTD ++ + +AK+A SK+ S + +S W
Sbjct: 406 TGDNGIEGTQVGKILVTDYRAYVAVNRKVAKKALSKITSGRIKGKSYRAW 455
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 490 (177.5 bits), Expect = 4.2e-49, Sum P(2) = 4.2e-49
Identities = 127/352 (36%), Positives = 179/352 (50%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L LL ++GY++ TPIQA +P L G D+ G TGSGKTAAF L L +L
Sbjct: 6 LKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKL-- 63
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ-FTDIRCCLVVGGLSTKMQETALRSMPD 121
KR I+ L+L PTRELA QV I +A+ +++ + GG+ Q +L
Sbjct: 64 DVKRF-RIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGAH 122
Query: 122 IVVATPGRMIDHL-RNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTML 180
I+V TPGR++DHL RN + R+LE+GF ++ ++ P+ RQT+L
Sbjct: 123 IIVGTPGRIVDHLDRNRLDLSNLNMLVLDEAD--RMLEMGFQPQLDAIIEQSPRERQTLL 180
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSK 240
FSAT E + + K + P+ + A + ++ +T+ Q LL L K
Sbjct: 181 FSATFPEQIQSIAKQIMYNPVMVKAAVTHEK-NTIEQHFYQLDDDKSRMQALQLLLLEHK 239
Query: 241 TFTSKVIIFSGTKQAAHRLKI-LFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
++F TK+ ++ L GL LHG+L Q R E L F + L+A
Sbjct: 240 P--ESAVVFCNTKRETQKVADELEGLG-FSVLALHGDLEQRDRDETLLQFANKSACVLVA 296
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
TDVAARGLDI + V NY D ++HR+GRT RAG +G A TF D D
Sbjct: 297 TDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQD 348
Score = 39 (18.8 bits), Expect = 4.2e-49, Sum P(2) = 4.2e-49
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 334 TARAGREGYAV--TFVTDNDR--SLLKAIAKRAGSKLKSRIVAEQSITKW 379
T G EG V VTD ++ + +AK+A SK+ S + +S W
Sbjct: 406 TGDNGIEGTQVGKILVTDYRAYVAVNRKVAKKALSKITSGRIKGKSYRAW 455
>DICTYBASE|DDB_G0275443 [details] [associations]
symbol:helB1 "putative RNA splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
ProtClustDB:CLSZ2500419 Uniprot:Q553B1
Length = 1151
Score = 521 (188.5 bits), Expect = 6.1e-49, P = 6.1e-49
Identities = 131/361 (36%), Positives = 187/361 (51%)
Query: 18 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPA--IRVLIL 75
Y KPT IQA IP + GRD+ G A TGSGKT AF LP +L +PK P + LI+
Sbjct: 529 YEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFRHILAQPKSAPGEGMIALIM 588
Query: 76 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHL- 134
+PTRELA+Q+H +K ++ +R V GG S Q L+ DIVV TPGRMID L
Sbjct: 589 SPTRELALQIHVECKKFSKVLGLRTACVYGGASISEQIAELKRGADIVVCTPGRMIDILC 648
Query: 135 -RNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELI 193
N R+ ++GF +I+ +V RQT++FSAT V+ +
Sbjct: 649 ANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVDSIRPDRQTIMFSATFPPKVENVA 708
Query: 194 KLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTK 253
K L KPL + A + S + + LLS+ +++IF+ +
Sbjct: 709 KKILNKPLEIIAGGRSIVSSDIEQFVEVRPTETRFRRLIELLSIWYHK--GQILIFTNRQ 766
Query: 254 QAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQ 313
+ L + + LHG+ Q R E + F+ + LIAT +A+RGLDI +
Sbjct: 767 ETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNKVKTILIATPLASRGLDIKDLN 826
Query: 314 TVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT-DNDR---SLLKAIAKRAGSKLKSR 369
V+N+ CP L YVHRVGRT RAG G A TF+T D +R S++KA+ +++GSK+
Sbjct: 827 LVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITPDEERFSSSIIKAL-EQSGSKVPDE 885
Query: 370 I 370
+
Sbjct: 886 L 886
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 512 (185.3 bits), Expect = 8.0e-49, P = 8.0e-49
Identities = 130/378 (34%), Positives = 196/378 (51%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ S ++ A + Y KPT IQ +P+ L+GRD+ G A TGSGKTAAF LP + ++
Sbjct: 232 DCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIM 291
Query: 62 YRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
+P+ R +I PTRELA Q+ +K ++ +R V GG+S Q L++
Sbjct: 292 DQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAG 351
Query: 120 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTM 179
+IVVATPGR+ID L+ + R+ +LGF ++ +V RQT+
Sbjct: 352 CEIVVATPGRLIDMLKMK-ALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTL 410
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCS 239
LFSAT+ V++L + L+ P+R++ +T +L L
Sbjct: 411 LFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAE-KLPWLLEKLPG 469
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
V++F+ K ++ L + K A LHG+ QA R+E L+ F+ LIA
Sbjct: 470 MIDEGDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIA 529
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG-REGYAVTFVTDNDRSLLKAI 358
TDVAARGLDI ++TV+NY +D+ +VHR+GRT RAG R+G A T VT +
Sbjct: 530 TDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQRE------- 582
Query: 359 AKRAGSKLKSRIVAEQSI 376
A+ AG + S + A Q++
Sbjct: 583 ARFAGELVNSLVAAGQNV 600
>POMBASE|SPAC1F7.02c [details] [associations]
symbol:has1 "ATP-dependent RNA helicase Has1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1F7.02c GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY OrthoDB:EOG4ZKNVS PIR:S62574 RefSeq:NP_594488.1
ProteinModelPortal:Q09916 STRING:Q09916 EnsemblFungi:SPAC1F7.02c.1
GeneID:2541668 KEGG:spo:SPAC1F7.02c NextBio:20802761 Uniprot:Q09916
Length = 578
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 129/395 (32%), Positives = 206/395 (52%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L LS + +A + +G+ T IQ IP L GRD+ G+A TGSGKT AF +PT+E +L
Sbjct: 93 DLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIE-ML 151
Query: 62 YRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
Y K P V+I++PTRELA+Q+ + +++ ++ +V+GG + + + L
Sbjct: 152 YALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKG 211
Query: 120 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP-KRRQT 178
+++VATPGR++DHL+N+ R+LE+GF E+ +++++ P + RQT
Sbjct: 212 VNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQT 271
Query: 179 MLFSATLTEDVDELIKLSLTK-PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 237
+LFSAT T V++L ++SL PL ++ D S K ST+ + +L S
Sbjct: 272 LLFSATQTTKVEDLARISLKPGPLYVNVD-SGKPTSTVEGLEQGYVVVDSDKRFLLLFSF 330
Query: 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
+ KVI+F + + + L L +LHG Q +R F L
Sbjct: 331 LKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGIL 390
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR-EGYAVTFVTDNDRSLLK 356
+ T+VAARGLDI V ++ Y P D Y+HRVGRTAR + G ++ F+ ++ L+
Sbjct: 391 LCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGTKGTGKSLMFLAPSELGFLR 450
Query: 357 AIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVA 391
+ K A L E K + + Q+E V+
Sbjct: 451 YL-KTAKVSLNE---FEFPANKVANVQSQLEKLVS 481
>RGD|1562539 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10116 "Rattus norvegicus" [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006396
"RNA processing" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=ISO] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1562539 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730 GO:GO:0003723
GO:GO:0006396 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000075100 IPI:IPI00193685
Ensembl:ENSRNOT00000001859 UCSC:RGD:1562539 OrthoDB:EOG469QTB
Uniprot:D3ZHY6
Length = 906
Score = 516 (186.7 bits), Expect = 9.5e-49, P = 9.5e-49
Identities = 128/351 (36%), Positives = 181/351 (51%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+ LS P+ + GY PTPIQ IP+ L G+D+ A TGSGKTA F LP ERL
Sbjct: 100 MGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKA 159
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
R + A R LIL+PTRELA+Q +++ +FT ++ L++GG + Q AL PDI
Sbjct: 160 RSAQTGA-RALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDI 218
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR++ H+ M+ RL E+GF+ ++ E++ P QT+LFS
Sbjct: 219 IIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVLFS 277
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTF 242
ATL + + E + LT+P+ + D +K L + AVLL L
Sbjct: 278 ATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFFLVREDT---KTAVLLYLLQNVV 334
Query: 243 T--SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+ ++F TK A L L + A ++ L Q R L F LI T
Sbjct: 335 RPQDQNVVFVATKHHAEYLTELLTGQGVSCAHIYSALDQTARKINLAKFTHNKCSTLIVT 394
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
D+AARGLDI + VINY+ P ++HRVGR ARAGR G A + V ++
Sbjct: 395 DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDE 445
>UNIPROTKB|E2QSR5 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
Ensembl:ENSCAFT00000014352 Uniprot:E2QSR5
Length = 912
Score = 501 (181.4 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
Identities = 126/351 (35%), Positives = 178/351 (50%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+ LS P+ + GY PTPIQ IP+ L G+D+ A TGSGKTA F +P ERL
Sbjct: 101 MGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLIPMFERLKT 160
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+ A R LIL+PTRELA+Q +++ +FT +R L++GG + Q AL PDI
Sbjct: 161 HSAQTGA-RALILSPTRELALQTMKFTKELGKFTGLRTALILGGDKMEDQFAALHENPDI 219
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR++ H+ M+ L E+GF+ ++ E++ P QT+LFS
Sbjct: 220 IIATPGRLV-HVAVEMNLKLQSVEYVDSIDW--LFEMGFAEQLQEIIGRLPGGHQTVLFS 276
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTF 242
ATL + + E + LT+P+ + D AK L + AVLL L
Sbjct: 277 ATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSFFLVREDT---KAAVLLHLLRTVV 333
Query: 243 T--SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+ ++F TK A L L + ++ L Q R L F LI T
Sbjct: 334 RPQDQTVVFVATKHHAEYLSELLTTQGVSCTHIYSALDQTARKINLAKFTHNKCSALIVT 393
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
D+AARGLDI + VINY+ P ++HRVGR ARAGR G A + V ++
Sbjct: 394 DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDE 444
Score = 39 (18.8 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 550 KKSKHSSQESNSRAKEMRELFHSDMSEKKQK 580
++ +E + K + E+F M K+Q+
Sbjct: 622 EEKPEEDEEEEAAGKSIEEVFTEVMGRKRQQ 652
Score = 38 (18.4 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 576 EKKQKR-TGGIGKKPKHSFKSKS-RY 599
++K+KR G G++ K K++S RY
Sbjct: 726 DRKKKRFVGQSGQEDKKKIKTESGRY 751
>FB|FBgn0010220 [details] [associations]
symbol:Dbp45A "DEAD box protein 45A" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS;NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 GO:GO:0000381
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
GeneTree:ENSGT00670000098028 EMBL:L13612 EMBL:Z23266 EMBL:AY058728
PIR:S38329 RefSeq:NP_476927.1 UniGene:Dm.4231
ProteinModelPortal:Q07886 SMR:Q07886 PaxDb:Q07886
EnsemblMetazoa:FBtr0088564 GeneID:35917 KEGG:dme:Dmel_CG12759
CTD:35917 FlyBase:FBgn0010220 InParanoid:Q07886 OMA:CQLLSMT
OrthoDB:EOG431ZDJ PhylomeDB:Q07886 GenomeRNAi:35917 NextBio:795815
Bgee:Q07886 GermOnline:CG12759 Uniprot:Q07886
Length = 521
Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
Identities = 134/379 (35%), Positives = 184/379 (48%)
Query: 7 RP-LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 65
RP L++ LG TPIQ CIP L G+D G+A TGSGKT AFALP LERL P
Sbjct: 15 RPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEEPV 74
Query: 66 RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVA 125
A L+LTPT ELA Q+ Q +R C+V GG ++ L P IVVA
Sbjct: 75 SHFA---LVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHIVVA 131
Query: 126 TPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATL 185
PGR+ DHL + R+L F + + R PK RQ + FSAT+
Sbjct: 132 MPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLSIIERCLPKTRQNLFFSATM 191
Query: 186 TEDVDELIKLSLTKP-LRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSK---- 240
+ + E + S D TL +++ VL+ K
Sbjct: 192 KDFIKESSIFPIASDCFEWSQDSDVATVETLDQRYLLCADY---DRDMVLIEALRKYREE 248
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+ V+IF+ TK+ L + + LHG + Q +R+ AL F+ + LIAT
Sbjct: 249 NENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFKSNQIRTLIAT 308
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT-FVTDNDRSLLKAIA 359
DVAARGLDI V+ V+N+ PR Y+HRVGRTARAGR+G +++ F D LL AI
Sbjct: 309 DVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLAAIE 368
Query: 360 KRAGSKLKSRIVAEQSITK 378
+ +KL + ++ + +
Sbjct: 369 EEINTKLTEHPIDQRMVER 387
>TAIR|locus:2086909 [details] [associations]
symbol:AT3G18600 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0001510 "RNA methylation" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0034968
"histone lysine methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AP001303 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AY070052 EMBL:AY096431 IPI:IPI00544206
RefSeq:NP_188490.1 UniGene:At.28418 ProteinModelPortal:Q9LIH9
SMR:Q9LIH9 STRING:Q9LIH9 PaxDb:Q9LIH9 PRIDE:Q9LIH9 DNASU:821391
EnsemblPlants:AT3G18600.1 GeneID:821391 KEGG:ath:AT3G18600
GeneFarm:1030 TAIR:At3g18600 InParanoid:Q9LIH9 PhylomeDB:Q9LIH9
ProtClustDB:CLSN2914752 Genevestigator:Q9LIH9 GermOnline:AT3G18600
Uniprot:Q9LIH9
Length = 568
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 120/386 (31%), Positives = 204/386 (52%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LS A + +G+ T IQA I L G+D+ G+A TGSGKT AF +P +E LL+
Sbjct: 94 LDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVE-LLF 152
Query: 63 RPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+ + P V+++ PTRELA+Q ++ E++ + +V+GG + + + + S
Sbjct: 153 KERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGS 212
Query: 121 DIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTML 180
++V+ATPGR++DHL+N+ + R+LE F ++++++++ PK RQT L
Sbjct: 213 NLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKTRQTAL 272
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSK 240
FSAT T V +L ++SLT P+ + D +R T + +L+S K
Sbjct: 273 FSATQTSKVKDLARVSLTSPVHVDVD-DGRRKVTNEGLEQGYCVVPSKQRLILLISFLKK 331
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K+++F T ++ + ++ + +++HG + Q +R + F K L+ T
Sbjct: 332 NLNKKIMVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAKKGILLCT 391
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA-GREGYAVTFVTDNDRSLLKAIA 359
DVAARGLDI V +I Y P T Y+HRVGRTAR G +G A+ + + ++ +
Sbjct: 392 DVAARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLIPEELQFIRYL- 450
Query: 360 KRAGSKLKSRIVAEQSITKWSKIIEQ 385
K A +K E+ ++ +E+
Sbjct: 451 KAAKVPVKELEFNEKRLSNVQSALEK 476
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 125/384 (32%), Positives = 189/384 (49%)
Query: 5 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP 64
LS+ + RA LGY PT +Q IP+AL +D+ + TGSGKTA+F +P E + +
Sbjct: 11 LSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEE 70
Query: 65 KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVV 124
+ P + L+LTPTRELAVQV I I +F I+ + G Q+ L+ IVV
Sbjct: 71 NK-P--QALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVV 127
Query: 125 ATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSAT 184
TPGR++DH+ + +L +GF ++ ++ P +R TMLFSAT
Sbjct: 128 GTPGRVLDHIEKG-TLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSAT 186
Query: 185 LTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTS 244
L EDV+ L + + P + + + +T +E + L T +
Sbjct: 187 LPEDVERLSRTYMNAPTHIEI-----KAAGITTDKIEHTLFEVREEEKLSLLKDVTTIEN 241
Query: 245 --KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
IIF T++ + ++HG + Q R ++ FRK +L+ATDV
Sbjct: 242 PDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDV 301
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
AARG+DI + VINY P + SYVHR GRT RAG G A+TF+T + L+ I
Sbjct: 302 AARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEAYI 361
Query: 363 GSKL-KSRIVAEQSITKWSKIIEQ 385
G + K+ +++ + K E+
Sbjct: 362 GFAIPKANAPSKEEVMKGKAAFEE 385
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 125/384 (32%), Positives = 189/384 (49%)
Query: 5 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP 64
LS+ + RA LGY PT +Q IP+AL +D+ + TGSGKTA+F +P E + +
Sbjct: 11 LSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEE 70
Query: 65 KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVV 124
+ P + L+LTPTRELAVQV I I +F I+ + G Q+ L+ IVV
Sbjct: 71 NK-P--QALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVV 127
Query: 125 ATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSAT 184
TPGR++DH+ + +L +GF ++ ++ P +R TMLFSAT
Sbjct: 128 GTPGRVLDHIEKG-TLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSAT 186
Query: 185 LTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTS 244
L EDV+ L + + P + + + +T +E + L T +
Sbjct: 187 LPEDVERLSRTYMNAPTHIEI-----KAAGITTDKIEHTLFEVREEEKLSLLKDVTTIEN 241
Query: 245 --KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
IIF T++ + ++HG + Q R ++ FRK +L+ATDV
Sbjct: 242 PDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDV 301
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
AARG+DI + VINY P + SYVHR GRT RAG G A+TF+T + L+ I
Sbjct: 302 AARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEAYI 361
Query: 363 GSKL-KSRIVAEQSITKWSKIIEQ 385
G + K+ +++ + K E+
Sbjct: 362 GFAIPKANAPSKEEVMKGKAAFEE 385
>ZFIN|ZDB-GENE-030131-9685 [details] [associations]
symbol:ddx18 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 18" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0030099 "myeloid
cell differentiation" evidence=IMP] [GO:0030097 "hemopoiesis"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-9685
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0030099 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K13179 CTD:8886
HOVERGEN:HBG105702 EMBL:AY648748 IPI:IPI00492099
RefSeq:NP_001003411.1 UniGene:Dr.24235 ProteinModelPortal:Q6DRL1
STRING:Q6DRL1 PRIDE:Q6DRL1 GeneID:321127 KEGG:dre:321127
InParanoid:Q6DRL1 NextBio:20807243 ArrayExpress:Q6DRL1 Bgee:Q6DRL1
Uniprot:Q6DRL1
Length = 653
Score = 479 (173.7 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
Identities = 127/388 (32%), Positives = 202/388 (52%)
Query: 5 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP 64
+S L+ + +G+ T IQ I L GRD+ +A TGSGKT AF +P++E L+Y+
Sbjct: 168 VSENTLKGVKEMGFDTMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAFLIPSIE-LIYKL 226
Query: 65 KRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
K +P V++L+PTRELA+Q + +++++ L++GG + + L + +I
Sbjct: 227 KFMPRNGTGVIVLSPTRELAMQTYGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGVNI 286
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+VATPGR++DHL+N+ R+LE+GF E+ ++++L PK+RQ+MLFS
Sbjct: 287 LVATPGRLLDHLQNTPGFMFKNLQCLIIDEADRILEVGFEEELKQIIKLLPKKRQSMLFS 346
Query: 183 ATLTEDVDELIKLSLTK-PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
AT T V++L ++SL K PL + D + K +T+ + +L + K
Sbjct: 347 ATQTRKVEDLARISLKKEPLYVGVDDN-KDTATVEGLEQGYVVCPSEKRFLLLFTFLKKN 405
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
K+++F + + L L +HG Q +R F L+ TD
Sbjct: 406 RKKKLMVFFSSCMSVKFHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNADSGILLCTD 465
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA--GREGYAVTFVTDNDRSLLKAIA 359
VAARGLDI V ++ + P D Y+HRVGRTAR GR G+A+ + + L+ +
Sbjct: 466 VAARGLDIPEVDWIVQFDPPDDPKEYIHRVGRTARGINGR-GHALLILRPEELGFLRFL- 523
Query: 360 KRAGSKLKSRIVAEQSITKWSKIIEQME 387
K+A L E S TK S I Q++
Sbjct: 524 KQAKVPLSE---FEFSWTKISDIQSQLD 548
Score = 40 (19.1 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 571 HSDMSEKKQKRTGGIG---KKPKHSFKSK 596
HS K KR GG G +K K+ K+K
Sbjct: 608 HSSKGVKLHKRGGGGGFGYQKSKNVHKAK 636
>UNIPROTKB|E9PIF2 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HGNC:HGNC:2735 ChiTaRS:DDX10 EMBL:AP002453
EMBL:AP003027 EMBL:AP003387 IPI:IPI00982941
ProteinModelPortal:E9PIF2 SMR:E9PIF2 Ensembl:ENST00000526794
UCSC:uc001pkl.1 ArrayExpress:E9PIF2 Bgee:E9PIF2 Uniprot:E9PIF2
Length = 835
Score = 507 (183.5 bits), Expect = 6.1e-48, P = 6.1e-48
Identities = 125/391 (31%), Positives = 203/391 (51%)
Query: 5 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP 64
LS+ L+ + Y T IQ I LAL G+D+ G+A TGSGKT AF +P LE L YR
Sbjct: 76 LSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEAL-YRL 134
Query: 65 K--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+ + VLI++PTRELA Q ++ K+ + D L++GG K + + ++ +I
Sbjct: 135 QWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNI-NI 193
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+V TPGR++ H+ ++S R+L++GF+ ++ ++ PK+RQT+LFS
Sbjct: 194 LVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFS 253
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTF 242
AT T+ V +L +LSL P + AK ST + +VL S
Sbjct: 254 ATQTKSVKDLARLSLKNPEYVWVHEKAKY-STPATLEQNYIVCELQQKISVLYSFLRSHL 312
Query: 243 TSK-VIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K ++ FS K+ + ++ L + LHG Q +R+E F ++ L AT
Sbjct: 313 KKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRAAVLFAT 372
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARGLD V V+ + CP D +Y+HR GRTAR +G A+ + +++++++ + +
Sbjct: 373 DIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAMVQQLLQ 432
Query: 361 RAGSKLKSRIVAEQSIT---KWSKIIEQMED 388
+ + +I E+ I K I+ Q +D
Sbjct: 433 KKVPVKEIKINPEKLIDVQKKLESILAQDQD 463
>GENEDB_PFALCIPARUM|PFF1500c [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA
helicase, putative" species:5833 "Plasmodium falciparum"
[GO:0016070 "RNA metabolic process" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AL844505 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
RefSeq:XP_966291.1 ProteinModelPortal:C6KTE4
EnsemblProtists:PFF1500c:mRNA GeneID:3885813 KEGG:pfa:PFF1500c
EuPathDB:PlasmoDB:PF3D7_0630900 ProtClustDB:CLSZ2514457
Uniprot:C6KTE4
Length = 601
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 117/357 (32%), Positives = 188/357 (52%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELN+ L + + L + T IQA CIP L+G+DI G+A TGSGKT AF +P++ +L
Sbjct: 152 ELNICDALKKGLKELNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKTLAFLVPSIN-IL 210
Query: 62 YRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
Y K +P VLI++PTREL +Q++ + + + ++ +++GG+S ++
Sbjct: 211 YNIKFLPKNGTGVLIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGGMSRNEEKKKFIHG 270
Query: 120 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTM 179
+I++ATPGR++DH++N+ RLL++GF EI+ +++ PK+RQT
Sbjct: 271 INILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRLPKKRQTA 330
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCS 239
LFSAT T V+ LI+LSL KP+ + + +T+ + +L +
Sbjct: 331 LFSATQTTKVESLIRLSLQKPIFIEV---TTKIATVERLQQGYALVDEDKRFLLLFTFLK 387
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
K + K+++F + L + +HG Q +RL++ F L+
Sbjct: 388 KNMSKKIMVFFNNCMSVQFYNDLLNYIDIPTYCIHGKKKQNKRLKSFHDFSAAKCAILLC 447
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA-GREGYAVTFVTDNDRSLL 355
T+VAARGLDI V +I Y P D Y+HRVGRT R G A+ F+ ++ L
Sbjct: 448 TNVAARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCRGQDSNGSAIIFLMKHELKFL 504
>UNIPROTKB|C6KTE4 [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA helicase,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 EMBL:AL844505 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_966291.1
ProteinModelPortal:C6KTE4 EnsemblProtists:PFF1500c:mRNA
GeneID:3885813 KEGG:pfa:PFF1500c EuPathDB:PlasmoDB:PF3D7_0630900
ProtClustDB:CLSZ2514457 Uniprot:C6KTE4
Length = 601
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 117/357 (32%), Positives = 188/357 (52%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELN+ L + + L + T IQA CIP L+G+DI G+A TGSGKT AF +P++ +L
Sbjct: 152 ELNICDALKKGLKELNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKTLAFLVPSIN-IL 210
Query: 62 YRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
Y K +P VLI++PTREL +Q++ + + + ++ +++GG+S ++
Sbjct: 211 YNIKFLPKNGTGVLIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGGMSRNEEKKKFIHG 270
Query: 120 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTM 179
+I++ATPGR++DH++N+ RLL++GF EI+ +++ PK+RQT
Sbjct: 271 INILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRLPKKRQTA 330
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCS 239
LFSAT T V+ LI+LSL KP+ + + +T+ + +L +
Sbjct: 331 LFSATQTTKVESLIRLSLQKPIFIEV---TTKIATVERLQQGYALVDEDKRFLLLFTFLK 387
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
K + K+++F + L + +HG Q +RL++ F L+
Sbjct: 388 KNMSKKIMVFFNNCMSVQFYNDLLNYIDIPTYCIHGKKKQNKRLKSFHDFSAAKCAILLC 447
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA-GREGYAVTFVTDNDRSLL 355
T+VAARGLDI V +I Y P D Y+HRVGRT R G A+ F+ ++ L
Sbjct: 448 TNVAARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCRGQDSNGSAIIFLMKHELKFL 504
>UNIPROTKB|Q13206 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CH471065
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 CTD:1662 HOVERGEN:HBG102756 OrthoDB:EOG4BK536
EMBL:U28042 EMBL:AB040537 EMBL:AK315216 EMBL:BC091521 EMBL:BC093654
EMBL:BC093656 IPI:IPI00297900 RefSeq:NP_004389.2 UniGene:Hs.591931
PDB:2PL3 PDBsum:2PL3 ProteinModelPortal:Q13206 SMR:Q13206
IntAct:Q13206 STRING:Q13206 PhosphoSite:Q13206 DMDM:76803554
SWISS-2DPAGE:Q13206 PaxDb:Q13206 PeptideAtlas:Q13206 PRIDE:Q13206
Ensembl:ENST00000322536 GeneID:1662 KEGG:hsa:1662 UCSC:uc001pkm.3
GeneCards:GC11P108569 HGNC:HGNC:2735 HPA:HPA004691 MIM:601235
neXtProt:NX_Q13206 PharmGKB:PA27200 InParanoid:Q13206 OMA:ADKVIEP
ChiTaRS:DDX10 EvolutionaryTrace:Q13206 GenomeRNAi:1662 NextBio:6838
ArrayExpress:Q13206 Bgee:Q13206 CleanEx:HS_DDX10
Genevestigator:Q13206 GermOnline:ENSG00000178105 Uniprot:Q13206
Length = 875
Score = 507 (183.5 bits), Expect = 7.8e-48, P = 7.8e-48
Identities = 125/391 (31%), Positives = 203/391 (51%)
Query: 5 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP 64
LS+ L+ + Y T IQ I LAL G+D+ G+A TGSGKT AF +P LE L YR
Sbjct: 76 LSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEAL-YRL 134
Query: 65 K--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+ + VLI++PTRELA Q ++ K+ + D L++GG K + + ++ +I
Sbjct: 135 QWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNI-NI 193
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+V TPGR++ H+ ++S R+L++GF+ ++ ++ PK+RQT+LFS
Sbjct: 194 LVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFS 253
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTF 242
AT T+ V +L +LSL P + AK ST + +VL S
Sbjct: 254 ATQTKSVKDLARLSLKNPEYVWVHEKAKY-STPATLEQNYIVCELQQKISVLYSFLRSHL 312
Query: 243 TSK-VIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K ++ FS K+ + ++ L + LHG Q +R+E F ++ L AT
Sbjct: 313 KKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRAAVLFAT 372
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARGLD V V+ + CP D +Y+HR GRTAR +G A+ + +++++++ + +
Sbjct: 373 DIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAMVQQLLQ 432
Query: 361 RAGSKLKSRIVAEQSIT---KWSKIIEQMED 388
+ + +I E+ I K I+ Q +D
Sbjct: 433 KKVPVKEIKINPEKLIDVQKKLESILAQDQD 463
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
Identities = 132/370 (35%), Positives = 190/370 (51%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ N +L A LG+++PTPIQA P+AL GRD+ G A TGSGKT A+ LP L +
Sbjct: 169 DANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVS 228
Query: 62 YRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
+P+ + VLIL PTRELAVQ+ K + +R + GG Q LR
Sbjct: 229 AQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRG 288
Query: 120 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTM 179
+IV+ATPGR+ID L R+L++GF +I ++V RQT+
Sbjct: 289 VEIVIATPGRLIDMLE-CQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTL 347
Query: 180 LFSATLTEDVDELIKLSLTKPLR-LSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 238
L+SAT +V+ L + L P + + K ++ N+ LL+L
Sbjct: 348 LWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNR---LLTLL 404
Query: 239 SKTFT-SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
+ SK++IF TK+ ++ + A +HG+ TQ++R L F+ +
Sbjct: 405 KQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIM 464
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT-DND---RS 353
ATDVAARGLD+ ++ V+NY P L Y+HR+GRT RAG +G A TF T DN R
Sbjct: 465 TATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARE 524
Query: 354 LLKAIAKRAG 363
L+K I + AG
Sbjct: 525 LVK-ILQEAG 533
>ZFIN|ZDB-GENE-021212-1 [details] [associations]
symbol:ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
55" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021212-1 GO:GO:0007275 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AF506203 EMBL:BC059534 IPI:IPI00493927 RefSeq:NP_775336.1
UniGene:Dr.16883 ProteinModelPortal:Q8JHJ2 STRING:Q8JHJ2
GeneID:286745 KEGG:dre:286745 InParanoid:Q8JHJ2 NextBio:20806420
ArrayExpress:Q8JHJ2 Uniprot:Q8JHJ2
Length = 593
Score = 453 (164.5 bits), Expect = 1.0e-47, Sum P(3) = 1.0e-47
Identities = 119/386 (30%), Positives = 199/386 (51%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ + L +L+ + LG++ TP+Q+ACIPL ++ +D+ A+TGSGKT AF +P LE L
Sbjct: 12 LPVKLHDNILQTLKELGFTYMTPVQSACIPLFMSNKDVAAEAVTGSGKTLAFVIPALEIL 71
Query: 61 LYRPKRIPAIRV--LILTPTRELAVQVHSMIEKIAQ-FTDIRCCLVVGGLSTKMQETALR 117
L R +++ ++V LI+TPTRELA+Q+ ++ + Q F L++GG + L+
Sbjct: 72 LKREEKLKKMQVGALIITPTRELAMQISEVMGRFLQGFPQFTQILLIGGSNPIEDVEKLK 131
Query: 118 SM-PDIVVATPGRMIDHLRNS-----MSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRL 171
+ +I++ATPGR+ D R ++ RLL++GF A ++ ++
Sbjct: 132 TQGANIIIATPGRLEDMFRRKADGLDLATAVKSLDVLVLDEADRLLDMGFEASLNTILGY 191
Query: 172 CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLS-------ADPSAKRPSTLTXXXXXXXX 224
PK+R+T LFSAT T+++++L++ L P+R++ A K P+ L+
Sbjct: 192 LPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVAASSVQKTPAKLSNYYTMCRA 251
Query: 225 XXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRL-KILFGLAALKAAE-LHGNLTQAQR 282
N L++ + K ++F T K L L + +HG + +R
Sbjct: 252 EEKFN---TLVAFLRQHKHEKQLVFFSTCACVEYFGKALEVLVKNVSIHCIHGKMKH-KR 307
Query: 283 LEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGY 342
+ FR L+ TDV ARG+DI V V+ Y P +S+VHR GRTAR G +G
Sbjct: 308 NKIFADFRALKSGILVCTDVMARGIDIPEVNWVLQYDPPSSASSFVHRCGRTARIGNQGN 367
Query: 343 AVTFVTDNDRSLLKAIAKRAGSKLKS 368
A+ F+ + S + ++ L+S
Sbjct: 368 ALVFLLPMEESYVNFLSINQKCPLQS 393
Score = 37 (18.1 bits), Expect = 1.0e-47, Sum P(3) = 1.0e-47
Identities = 6/27 (22%), Positives = 16/27 (59%)
Query: 417 IAHKEEIFARPKRTWFVTEKEKKLAVK 443
I K++ + ++ W +KEK++ ++
Sbjct: 484 IRFKDKNREKQRQKWLAEQKEKEVPLR 510
Score = 37 (18.1 bits), Expect = 1.0e-47, Sum P(3) = 1.0e-47
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 543 KIVKSNGKKSKHSS---QESNSRAKEMRELFHSDMSEKKQKR 581
KI K KK + Q+S++ +++ EL + KK K+
Sbjct: 523 KIKKDRKKKRLPKAKLDQDSDAAEEDLNELMNDTRLLKKLKK 564
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 480 (174.0 bits), Expect = 1.1e-47, Sum P(2) = 1.1e-47
Identities = 114/336 (33%), Positives = 177/336 (52%)
Query: 18 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIR--VLIL 75
Y++PTPIQ +P+A++GRD+ G A TGSGKTAAF P L ++ + + P +I+
Sbjct: 268 YTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 327
Query: 76 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR 135
PTREL Q+HS ++ + ++R V GG S Q AL+ +IVV TPGR+IDH++
Sbjct: 328 CPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVK 387
Query: 136 NSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 195
+ R+ ++GF ++ + RQT+LFSAT + +++L +
Sbjct: 388 KK-ATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 446
Query: 196 SLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQA 255
L P+R+ + +T + L T + V++F K
Sbjct: 447 ILIDPIRVVQGDIGEANEDVTQIVEIFPSGPS-KWNWLTRRLVEFTSSGSVLLFVTKKAN 505
Query: 256 AHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 315
A L LHG++ Q++R + + F+K+ + L+ATDVAARGLDI ++TV
Sbjct: 506 AEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTV 565
Query: 316 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
INY RD+ ++ HR+GRT RAG +G A T +T D
Sbjct: 566 INYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 601
Score = 39 (18.8 bits), Expect = 1.1e-47, Sum P(2) = 1.1e-47
Identities = 18/63 (28%), Positives = 20/63 (31%)
Query: 510 GKDKKEKAGISMVDLAYRRXXXXXXXXXXLDAGKIVKSNGKKSKHSSQESNSRAKEMREL 569
GK KK G L YR V SN + K SS R M+
Sbjct: 641 GKGKKLNIGGG--GLGYRERPGLGSESSDRGNNNSVMSNYEAYKPSSGAMGDRLTAMKAA 698
Query: 570 FHS 572
F S
Sbjct: 699 FQS 701
>UNIPROTKB|Q9KLE2 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 131/387 (33%), Positives = 199/387 (51%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL- 60
+L L+ +L A +G+ PTPIQAA IP+ L GRD G A TG+GKTAAF+LP L +L
Sbjct: 30 DLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLN 89
Query: 61 --LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ-FTDIRCCLVVGGLSTKMQETALR 117
Y+P+ I ++ PTRELA+QV + I+ + Q ++ + GG S Q AL+
Sbjct: 90 LSQYKPQAI------VMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALK 143
Query: 118 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQ 177
S IVV TPGR+ D + +L++GF ++ ++ P+ Q
Sbjct: 144 SGAHIVVGTPGRVKDLITRDR-LHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 202
Query: 178 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 237
+LFSAT+ V E+++ L P + S + T+ ++ + L
Sbjct: 203 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQ---TVAKVEQQYWVVKGVEKDEAMARL 259
Query: 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
T I+F T+Q RL KAA LHG++ Q+ R ++ ++ +D L
Sbjct: 260 LETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 319
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATDV ARGLD+ + V NY P D+ SY+HR+GRT RAGR+G A+ V N +L+
Sbjct: 320 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 379
Query: 358 IAKRAGSKLKS-RI-----VAEQSITK 378
I + S ++ ++ VAE +TK
Sbjct: 380 IERVTRSSMEEIQLPHRDKVAESRLTK 406
>TIGR_CMR|VC_A0804 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 131/387 (33%), Positives = 199/387 (51%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL- 60
+L L+ +L A +G+ PTPIQAA IP+ L GRD G A TG+GKTAAF+LP L +L
Sbjct: 30 DLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLN 89
Query: 61 --LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ-FTDIRCCLVVGGLSTKMQETALR 117
Y+P+ I ++ PTRELA+QV + I+ + Q ++ + GG S Q AL+
Sbjct: 90 LSQYKPQAI------VMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALK 143
Query: 118 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQ 177
S IVV TPGR+ D + +L++GF ++ ++ P+ Q
Sbjct: 144 SGAHIVVGTPGRVKDLITRDR-LHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 202
Query: 178 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 237
+LFSAT+ V E+++ L P + S + T+ ++ + L
Sbjct: 203 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQ---TVAKVEQQYWVVKGVEKDEAMARL 259
Query: 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
T I+F T+Q RL KAA LHG++ Q+ R ++ ++ +D L
Sbjct: 260 LETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 319
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATDV ARGLD+ + V NY P D+ SY+HR+GRT RAGR+G A+ V N +L+
Sbjct: 320 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 379
Query: 358 IAKRAGSKLKS-RI-----VAEQSITK 378
I + S ++ ++ VAE +TK
Sbjct: 380 IERVTRSSMEEIQLPHRDKVAESRLTK 406
>POMBASE|SPBC17D1.06 [details] [associations]
symbol:dbp3 "ATP-dependent RNA helicase Dbp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
"ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
Uniprot:Q10202
Length = 578
Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 133/366 (36%), Positives = 194/366 (53%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL- 60
EL++S L + Y +PTPIQAA P L GRD+ G A TGSGKT AF +P L+ L
Sbjct: 171 ELDVSAKLREGLK--NYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLN 228
Query: 61 -LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
L K +P RVL+++PTRELA+Q + + + Q T+++ +V GG Q A ++
Sbjct: 229 GLSDNKSVP--RVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAKNA 286
Query: 120 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPK----- 174
+++ TPGR++D L N S R+L+ GF +I ++ P
Sbjct: 287 -SVIIGTPGRLLD-LINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNG 344
Query: 175 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVL 234
RQT+ FSAT E V L L P++++ S + ++ ++E +L
Sbjct: 345 SRQTVFFSATWPESVRALAATFLKDPVKITIG-SDELAASQNITQIVEILDDPRSKERML 403
Query: 235 LSLCSKTFTS-----KVIIFSGTKQAAHRLKILFGLAALK--AAELHGNLTQAQRLEALE 287
+L K +S K++IF K+ A R++ G A K +HG+++Q RL+AL
Sbjct: 404 DNLLRKHLSSGGKDDKILIFVLYKKEAARVE---GTLARKYNVVGIHGDMSQGARLQALN 460
Query: 288 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 347
F+ L+ATDVAARGLDI VQ VIN P + YVHR+GRT RA +G A+TF
Sbjct: 461 DFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFF 520
Query: 348 TDNDRS 353
T D+S
Sbjct: 521 TPQDKS 526
>ASPGD|ASPL0000061778 [details] [associations]
symbol:AN0589 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 RefSeq:XP_658193.1
ProteinModelPortal:Q5BFU1 SMR:Q5BFU1 STRING:Q5BFU1
EnsemblFungi:CADANIAT00002085 GeneID:2876356 KEGG:ani:AN0589.2
HOGENOM:HOG000268801 OMA:MFERKNQ OrthoDB:EOG4R53B0 Uniprot:Q5BFU1
Length = 812
Score = 490 (177.5 bits), Expect = 1.3e-47, Sum P(2) = 1.3e-47
Identities = 133/383 (34%), Positives = 195/383 (50%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L +S P L + + T IQ+ I AL GRD+ G+A TGSGKT AF +P LE L
Sbjct: 52 DLPISEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPILENL- 110
Query: 62 YRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
YR + + LI++PTRELA+Q+ ++ KI ++ LV+GG S K ++ L M
Sbjct: 111 YRKQWSDHDGLGALIISPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLKEEQERLGRM 170
Query: 120 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTM 179
+I+V TPGRM+ HL + R++++GF + ++ P RQT+
Sbjct: 171 -NILVCTPGRMLQHLDQTAFFETYNLQMLVLDEADRIMDMGFQKTVDAIIGHLPPERQTL 229
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCS 239
LFSAT T+ V +L +LSL P ++ +A +T + + L S
Sbjct: 230 LFSATQTKKVSDLARLSLQDPEYVAVHEAASS-ATPSKLQQHYVVTPLPQKLDTLWSFIR 288
Query: 240 KTFTSKVIIF-SGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRK-QHVDF 296
SK I+F S KQ + + + LHG Q RL+ F + QH
Sbjct: 289 SNLKSKTIVFMSSGKQVRFVYESFRHMQPGIPLLHLHGRQKQGGRLDITTRFSQAQHA-V 347
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND-RSLL 355
L +TDVAARGLD V VI CP D +Y+HRVGRTAR R+G AV F+ ++ + +L
Sbjct: 348 LFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEEKGML 407
Query: 356 KAIA-KRAG-SKLKSRIVAEQSI 376
+ + KR ++ R +QSI
Sbjct: 408 RRLEQKRVTVERINVRANKQQSI 430
Score = 37 (18.1 bits), Expect = 1.3e-47, Sum P(2) = 1.3e-47
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 549 GKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHSFKSKSRYK 600
G + H+ ++S++ + + D +EKK + I K SK R K
Sbjct: 588 GDDALHA-EDSSASDSDASDSEAEDHTEKKDPKVVKISDKDTLVIDSKRREK 638
>WB|WBGene00021277 [details] [associations]
symbol:Y23H5B.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003723 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 GeneTree:ENSGT00550000074980 OMA:ADKVIEP
HSSP:P10081 EMBL:FO080963 RefSeq:NP_490989.1
ProteinModelPortal:Q9N478 SMR:Q9N478 STRING:Q9N478 PaxDb:Q9N478
EnsemblMetazoa:Y23H5B.6 GeneID:171810 KEGG:cel:CELE_Y23H5B.6
UCSC:Y23H5B.6 CTD:171810 WormBase:Y23H5B.6 InParanoid:Q9N478
NextBio:872791 Uniprot:Q9N478
Length = 732
Score = 462 (167.7 bits), Expect = 1.3e-47, Sum P(3) = 1.3e-47
Identities = 133/451 (29%), Positives = 213/451 (47%)
Query: 18 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP--AIRVLIL 75
Y+KPT IQ I +LTG D+ G+A TGSGKT A +P LE L +R K P + LI+
Sbjct: 96 YTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEAL-WRAKWSPDYGLGALII 154
Query: 76 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR 135
+PTRELA+Q S I + C LV+GG + + + +I+V TPGR++ H+
Sbjct: 155 SPTRELALQTFSTINAVGAHHGFSCGLVIGGSDVAFERNRISGI-NIIVCTPGRLLQHMD 213
Query: 136 NSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 195
+ R+L++GFS +++ ++ P RQT+LFSAT T +V +L ++
Sbjct: 214 ENAQMSCDSLQVLVLDEADRMLDMGFSKQLNSIINNLPAERQTLLFSATQTRNVKDLCRV 273
Query: 196 SLTKPLRLSA--DPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIF-SGT 252
P+ +S + SA P L N L S K ++F S
Sbjct: 274 CTNDPVFVSVHENASAATPDNLKQSYVIVEEEHKIN---ALWSFIEAHRKKKSLVFVSSC 330
Query: 253 KQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG 311
KQA + L L L G + Q +R+E F + LIATDVA+RGLD
Sbjct: 331 KQARFLTEAFSQLRPGLPVMGLWGTMNQKKRIETFTKFDESKAAVLIATDVASRGLDFEH 390
Query: 312 VQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN-DRSLLKAIAKRAG--SKLKS 368
+ VI CP + Y+HRVGR+AR G ++ V+ + + +++ + K + +LK
Sbjct: 391 IDWVIQVDCPAQIDDYIHRVGRSARMDDSGNSLLMVSPSQEEAMIGKLEKHSIPIEELKI 450
Query: 369 --------RIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHK 420
R+ + + ++ E + + A L+ + ++EA A +A
Sbjct: 451 HPDAMSDVRVKLRAILAESQELKEYAQKSIVAYLRSIYTMKDKKVFDVEAIDAA-ALADS 509
Query: 421 EEIFARPKRTWFVTEKEKKLAVKADKASIEK 451
+ + P R F+ +K KK K + +++
Sbjct: 510 FGLVSVP-RVRFLNKKAKKSGEKLMEKEVKE 539
Score = 40 (19.1 bits), Expect = 1.3e-47, Sum P(3) = 1.3e-47
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 421 EEIFARPKRTWFVTE-KEKKLAVKADKASIEKGKGSGNEVTSAQQA 465
E+IF K T + KE++ A K +I K K VT A
Sbjct: 557 EDIFTVKKPTGEPEQIKEEEAAEKISNITISKTKPLKKAVTKVSAA 602
Score = 38 (18.4 bits), Expect = 1.3e-47, Sum P(3) = 1.3e-47
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 542 GKIVKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKR 581
G ++ ++ K +E R K +RE + KK +R
Sbjct: 639 GLDIEKARQEIKSGDKEDRKRFKLLREQRRQEKLAKKNRR 678
>UNIPROTKB|F1NEQ3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:AADN02016926
IPI:IPI00598837 Ensembl:ENSGALT00000019841 Uniprot:F1NEQ3
Length = 659
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 137/417 (32%), Positives = 215/417 (51%)
Query: 5 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP 64
+S L+ +G++ T IQ I L GRDI +A TGSGKT AF +P +E L+Y+
Sbjct: 173 VSENTLKGISDMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAFLIPAVE-LIYKL 231
Query: 65 KRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
K +P V+IL+PTRELA+Q + +++++ L++GG + + L + +I
Sbjct: 232 KFMPRNGTGVIILSPTRELAMQTYGVLKELMNHHVHTYGLIMGGSNRSAEAQKLGNGINI 291
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+VATPGR++DH++N+ R+LE+GF E+ ++++L PKRRQTMLFS
Sbjct: 292 IVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEEEMKQIIKLLPKRRQTMLFS 351
Query: 183 ATLTEDVDELIKLSLTK-PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
AT T V++L K+SL K PL + D + K +T+ + +L + K
Sbjct: 352 ATQTRKVEDLAKISLKKEPLYVGVDDN-KETATVDGLEQGYVVCPSEKRFLLLFTFLKKN 410
Query: 242 FTSKVIIF-SGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K+++F S + ++L L +HG Q +R F L+ T
Sbjct: 411 RKKKLMVFFSSCMSVKYHYELL-NYIDLPVLAIHGKQKQTKRTTTFFQFCNAESGILLCT 469
Query: 301 DVAARGLDIIGVQTVINYACPRD--LTSYVHRVGRTARA--GREGYAVTFVTDNDRSLLK 356
DVAARGLDI V ++ Y P D Y+HRVGRTAR GR G+A+ + + L+
Sbjct: 470 DVAARGLDIPEVDWIVQYDPPDDPKQKEYIHRVGRTARGINGR-GHALLILRPEELGFLR 528
Query: 357 AIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKA 413
+ K+A R+ + WSKI + ++ Q+ +++ L K+ EA KA
Sbjct: 529 YL-KQA------RVPLSEFEFSWSKISD-IQSQLEKLIEKNY---FLHKSAQEAYKA 574
>ASPGD|ASPL0000054300 [details] [associations]
symbol:AN0583 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 RefSeq:XP_658187.1 ProteinModelPortal:Q5BFU7
STRING:Q5BFU7 EnsemblFungi:CADANIAT00002094 GeneID:2876361
KEGG:ani:AN0583.2 HOGENOM:HOG000246455 OMA:HLKVEMN
OrthoDB:EOG4JWZP1 Uniprot:Q5BFU7
Length = 936
Score = 366 (133.9 bits), Expect = 1.9e-47, Sum P(2) = 1.9e-47
Identities = 81/208 (38%), Positives = 123/208 (59%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+ L+ LL+A G+S PTPIQ IP+ + +D+ G A TGSGKTAAF +P +E+L
Sbjct: 96 MGLNANLLKAIARKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIPMIEKLKS 155
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+ A R LIL+P+RELA+Q +++++ + TD++ L+VGG S + Q + PDI
Sbjct: 156 HSTKFGA-RGLILSPSRELALQTLKVVKELGKGTDLKSVLLVGGDSLEEQFGMMAGNPDI 214
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V+ATPGR + HL+ M+ RL E+GF+A++ E++ P RQT+LFS
Sbjct: 215 VIATPGRFL-HLKVEMNLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPSTRQTLLFS 273
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAK 210
ATL + + E + L P + D +K
Sbjct: 274 ATLPKSLVEFARAGLQDPTLVRLDTESK 301
Score = 196 (74.1 bits), Expect = 1.9e-47, Sum P(2) = 1.9e-47
Identities = 48/120 (40%), Positives = 66/120 (55%)
Query: 247 IIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 306
I+F+ TK L L A + ++G+L Q R ++ FR + L+ TDVAARG
Sbjct: 377 IVFAATKHHVDYLYSLLREAGFAVSYVYGSLDQTARKIQVQNFRTGISNILVVTDVAARG 436
Query: 307 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 366
+DI + VINY P +VHRVGRTARAGR+G++ + V D D L + G KL
Sbjct: 437 IDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGRKL 496
>CGD|CAL0003464 [details] [associations]
symbol:orf19.5991 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
CGD:CAL0003464 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000003
EMBL:AACQ01000004 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_723054.1
RefSeq:XP_723201.1 STRING:Q5ANB2 GeneID:3635229 GeneID:3635325
KEGG:cal:CaO19.13412 KEGG:cal:CaO19.5991 KO:K14808 Uniprot:Q5ANB2
Length = 908
Score = 370 (135.3 bits), Expect = 2.0e-47, Sum P(3) = 2.0e-47
Identities = 77/206 (37%), Positives = 123/206 (59%)
Query: 5 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP 64
L++ +L GY +PTPIQ IPL + GRD+ G A TGSGKTAAF LP +ERL +
Sbjct: 106 LTKFILANIAKKGYKQPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAFVLPLIERL--KS 163
Query: 65 KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVV 124
++ +R +IL+P+RELA+Q + +++ + T+++ +++GG S + + + + PDI+V
Sbjct: 164 RQPGGVRAVILSPSRELALQTYKQVKEFSHGTNLQSIVLIGGDSLEEDFSKMMTKPDIIV 223
Query: 125 ATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSAT 184
TPGR + HL+ M RL E+GF+ +++EL+ P RQ++LFSAT
Sbjct: 224 CTPGRFL-HLKVEMQYDLMTVQYIVFDEADRLFEMGFAEQLNELLASLPSNRQSLLFSAT 282
Query: 185 LTEDVDELIKLSLTKPLRLSADPSAK 210
L + + K LT P+ + D +K
Sbjct: 283 LPRSLVDFAKAGLTNPVLVRLDAESK 308
Score = 178 (67.7 bits), Expect = 2.0e-47, Sum P(3) = 2.0e-47
Identities = 43/120 (35%), Positives = 62/120 (51%)
Query: 247 IIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 306
I+F TK + L A + ++G L Q R L FR + L+ TDVAARG
Sbjct: 398 IVFVPTKHHVEYVTKLLRDAGYLVSYIYGTLDQHARKNQLYQFRVGLTNVLVVTDVAARG 457
Query: 307 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 366
+DI + VIN+ P ++HRVGRTARAG +G+A + V + + L + G K+
Sbjct: 458 IDIPVLANVINFTLPASSKIFIHRVGRTARAGNKGWAYSIVNEKELPYLLDLELFLGKKI 517
Score = 46 (21.3 bits), Expect = 2.0e-47, Sum P(3) = 2.0e-47
Identities = 11/58 (18%), Positives = 25/58 (43%)
Query: 548 NGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKK----PKHSFKSKSRYKR 601
+ K+ KH Q + + R+ +H + ++ G+ K P+ KS + ++
Sbjct: 831 SNKRFKHKQQRAPKLPDKFRDDYHKQKKKVEKAIESGVNVKGFHTPQQEIKSTEQIRK 888
Score = 45 (20.9 bits), Expect = 3.0e-32, Sum P(2) = 3.0e-32
Identities = 28/133 (21%), Positives = 52/133 (39%)
Query: 340 EGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXX 399
E A TF DND + K K + + +S K II + ++ A +
Sbjct: 754 EAQAATFDLDNDDKIQTNKQVMRWDKKKGKYINSKSTDK-KYIISENGTKIPASFRSGKF 812
Query: 400 XXILRKAEMEATK-----AENMIAHKEEIFAR-PKRTWFVTEKEKKLAVKADKASIE-KG 452
++ ++ T + HK++ + P + K+KK KA ++ + KG
Sbjct: 813 DEWRKQRNLKPTSTVEDDSNKRFKHKQQRAPKLPDKFRDDYHKQKKKVEKAIESGVNVKG 872
Query: 453 KGSGN-EVTSAQQ 464
+ E+ S +Q
Sbjct: 873 FHTPQQEIKSTEQ 885
Score = 40 (19.1 bits), Expect = 8.3e-47, Sum P(3) = 8.3e-47
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 543 KIVKSNGKKSKH-----SSQESNSRAKEMRE 568
K V + G+K H +SQES R+KE+ E
Sbjct: 580 KDVAAKGEKLYHRTRQPASQESLKRSKEIIE 610
>UNIPROTKB|E2RC35 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 GeneTree:ENSGT00550000074980
CTD:1662 OMA:ADKVIEP EMBL:AAEX03003508 RefSeq:XP_536583.2
Ensembl:ENSCAFT00000022758 GeneID:479448 KEGG:cfa:479448
Uniprot:E2RC35
Length = 871
Score = 491 (177.9 bits), Expect = 2.0e-47, Sum P(2) = 2.0e-47
Identities = 121/383 (31%), Positives = 197/383 (51%)
Query: 5 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP 64
LS+ L+ + Y T IQ I LAL G+D+ G+A TGSGKT AF +P LE L YR
Sbjct: 76 LSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEAL-YRL 134
Query: 65 K--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+ + VLI++PTRELA Q ++ K+ + D L++GG K + + ++ +I
Sbjct: 135 QWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNI-NI 193
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+V TPGR++ H+ ++ R+L++GF+ ++ ++ PK+RQT+LFS
Sbjct: 194 LVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTLLFS 253
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTF 242
AT T+ V +L +LSL P + AK ST + +VL S
Sbjct: 254 ATQTKSVKDLARLSLKNPEYIWVHEKAKY-STPATLEQNYIVCELQQKISVLYSFLRSHL 312
Query: 243 TSK-VIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K ++ FS K+ + ++ L + LHG Q +R+E F ++ L AT
Sbjct: 313 KKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRSAVLFAT 372
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND-RSLLKAIA 359
D+AARGLD V V+ + CP D +Y+HR GRTAR +G A+ + ++ + +++ +
Sbjct: 373 DIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEKGMVQQLL 432
Query: 360 KRAGSKLKSRIVAEQSITKWSKI 382
++ + +I E+ I K+
Sbjct: 433 QKKVPVKEIKINPEKLIDVQKKL 455
Score = 37 (18.1 bits), Expect = 2.0e-47, Sum P(2) = 2.0e-47
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 404 RKAEMEATKAENMIAHKEEIF 424
R+A EA+K + + +EE F
Sbjct: 754 REARREASKRQAKLNDEEEAF 774
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 474 (171.9 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 115/349 (32%), Positives = 181/349 (51%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRI- 67
+L+ + G+ KPTPIQ P+AL+GRD+ G A TGSGKT ++ LP++ + +P+
Sbjct: 138 VLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVHINAQPQLQY 197
Query: 68 -PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVAT 126
VL+L PTRELAVQ+ + K + + IR V GG Q L +I +AT
Sbjct: 198 GDGPIVLVLAPTRELAVQIQTECSKFGKSSRIRNTCVYGGAPKGPQIRDLARGVEICIAT 257
Query: 127 PGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 186
PGR+ID L + R+L++GF +I ++V RQT+++SAT
Sbjct: 258 PGRLIDMLEAGKTNLKRVTYLVLDEAD-RMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 316
Query: 187 EDVDELIKLSLTKPLRLSADPSAKRPS-TLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSK 245
++V +L + L P++++ S T+T ++ L +K
Sbjct: 317 KEVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVKHLESALNEKDNK 376
Query: 246 VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAAR 305
+++F+ TK+ + A +HG+ Q +R L+ FRK ++ATDVAAR
Sbjct: 377 ILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSIMVATDVAAR 436
Query: 306 GLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 354
G+D+ G+ VINY P ++ YVHR+GRT R G G A++F T+ + L
Sbjct: 437 GIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKL 485
Score = 38 (18.4 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 330 RVGRTARAGREGY 342
R GR R GR GY
Sbjct: 528 RGGRGGRGGRGGY 540
>UNIPROTKB|F1P0I3 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074980 IPI:IPI00595697
OMA:ADKVIEP EMBL:AADN02005060 Ensembl:ENSGALT00000027709
Uniprot:F1P0I3
Length = 875
Score = 502 (181.8 bits), Expect = 2.7e-47, P = 2.7e-47
Identities = 123/364 (33%), Positives = 190/364 (52%)
Query: 5 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP 64
LS+ L+ + Y T IQ I LAL G+D+ G+A TGSGKT AF +P LE LLYR
Sbjct: 80 LSKKTLKGLQEAQYRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPALE-LLYRL 138
Query: 65 KRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+ A + VLI++PTRELA Q ++ K+ + D L++GG K + + + ++
Sbjct: 139 QWTSADGLGVLIISPTRELAFQTFKVLRKVGKNHDFSAGLIIGGKDLKEESERIHHI-NM 197
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ TPGR++ H+ + R+L++GF+ ++ ++ PK+RQT+LFS
Sbjct: 198 LICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNAIIENLPKKRQTLLFS 257
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAK--RPSTLTXXXXXXXXXXXXNQEAVLLSLCSK 240
AT T+ V +L +LSL P + AK P+TL N VL S
Sbjct: 258 ATQTKSVKDLARLSLKDPEYVWVHEKAKFSTPATLDQNYIVCELQHKIN---VLYSFLRS 314
Query: 241 TFTSK-VIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
K ++ F+ K+ + ++ L L LHG Q +R+E F ++ L
Sbjct: 315 HLKKKSIVFFASCKEVQYLFRVFCKLQPGLPVLALHGKQQQMKRMEVYTCFVRKKAAVLF 374
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAV-TFVTDNDRSLLKA 357
ATD+AARGLD V VI + CP D +Y+HRVGRTAR G A+ + ++ +++
Sbjct: 375 ATDIAARGLDFPAVNWVIQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEEKGMVEQ 434
Query: 358 IAKR 361
+A+R
Sbjct: 435 LAQR 438
>UNIPROTKB|Q5ZJF6 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
EMBL:AJ720478 IPI:IPI00595697 RefSeq:NP_001073193.1
UniGene:Gga.15096 HSSP:P26196 ProteinModelPortal:Q5ZJF6 SMR:Q5ZJF6
STRING:Q5ZJF6 GeneID:418965 KEGG:gga:418965 CTD:1662
HOVERGEN:HBG102756 InParanoid:Q5ZJF6 OrthoDB:EOG4BK536
NextBio:20822084 Uniprot:Q5ZJF6
Length = 875
Score = 502 (181.8 bits), Expect = 2.7e-47, P = 2.7e-47
Identities = 123/364 (33%), Positives = 190/364 (52%)
Query: 5 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP 64
LS+ L+ + Y T IQ I LAL G+D+ G+A TGSGKT AF +P LE LLYR
Sbjct: 80 LSKKTLKGLQEAQYRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPALE-LLYRL 138
Query: 65 KRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+ A + VLI++PTRELA Q ++ K+ + D L++GG K + + + ++
Sbjct: 139 QWTSADGLGVLIISPTRELAFQTFKVLRKVGKNHDFSAGLIIGGKDLKEESERIHHI-NM 197
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ TPGR++ H+ + R+L++GF+ ++ ++ PK+RQT+LFS
Sbjct: 198 LICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNAIIENLPKKRQTLLFS 257
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAK--RPSTLTXXXXXXXXXXXXNQEAVLLSLCSK 240
AT T+ V +L +LSL P + AK P+TL N VL S
Sbjct: 258 ATQTKSVKDLARLSLKDPEYVWVHEKAKFSTPATLDQNYIVCELQHKIN---VLYSFLRS 314
Query: 241 TFTSK-VIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
K ++ F+ K+ + ++ L L LHG Q +R+E F ++ L
Sbjct: 315 HLKKKSIVFFASCKEVQYLFRVFCKLQPGLPVLALHGKQQQMKRMEVYTCFVRKKAAVLF 374
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAV-TFVTDNDRSLLKA 357
ATD+AARGLD V VI + CP D +Y+HRVGRTAR G A+ + ++ +++
Sbjct: 375 ATDIAARGLDFPAVNWVIQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEEKGMVEQ 434
Query: 358 IAKR 361
+A+R
Sbjct: 435 LAQR 438
>TIGR_CMR|GSU_0522 [details] [associations]
symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
Length = 443
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 131/375 (34%), Positives = 192/375 (51%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+LNL +++ G+S TPIQ +PL+L G+D+ G A TG+GKTAAF + +LL
Sbjct: 5 DLNLPEQVMQGVADAGFSDCTPIQEKTLPLSLGGKDVAGQAQTGTGKTAAFLISLFTKLL 64
Query: 62 YR----PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVV----GGLSTKMQE 113
+R P R +IL PTREL VQ IEK AQ C + GG+ Q+
Sbjct: 65 RSGRGGERRHP--RAIILAPTRELVVQ----IEKDAQVLGAHCGFTIQAIYGGVDYMKQK 118
Query: 114 TALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP 173
AL+ D+VV TPGR+ID+L+ + R+ ++GF A++ ++R P
Sbjct: 119 NALKEGADVVVGTPGRLIDYLKQKV-YSLKEIEMLVIDEADRMFDMGFIADLRFILRRLP 177
Query: 174 K--RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQE 231
+RQ ++FSATL + V EL + P +++ P T +
Sbjct: 178 PYDKRQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQM---TAERVEQVLYHVGRKEKF 234
Query: 232 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 291
+LL L K + +IF TK+ A L + G++ Q +RL+ LE F+
Sbjct: 235 PLLLGLLRKEGMERTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRLKILEDFKS 294
Query: 292 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
+ +IATDVA+RGL I GV VINY P+D YVHR+GRTARAG EG A++ ++
Sbjct: 295 GKLPIMIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISMADEDG 354
Query: 352 RSLLKAIAKRAGSKL 366
L+AI + K+
Sbjct: 355 AFHLEAIHEYIKDKI 369
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 131/376 (34%), Positives = 200/376 (53%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E NL +L C+ + KP+PIQ+ P L GRD+ G A TGSGKT AF +P + +L
Sbjct: 120 ESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVL 177
Query: 62 YRPKRIP--AIRV----LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
+ K+I + +V L+L+PTRELAVQ+ ++ + + ++ V GG S Q +A
Sbjct: 178 KKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISA 237
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKR 175
+RS DIV+ TPGR+ D + +++ R+L++GF + ++ K
Sbjct: 238 IRSGVDIVIGTPGRLRDLIESNV-LRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKV 296
Query: 176 RQTMLFSATLTEDVDELIKLSLT-KPLRL---SADPSAKRPSTLTXXXXXXXXXXXXNQE 231
RQ ++FSAT DV +L + + P+++ S D +A +Q
Sbjct: 297 RQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHD---VMQIIEVLDERARDQR 353
Query: 232 AV-LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 290
+ LL K+ ++V++F+ K A RL+ KA +HGN Q++R +L LF+
Sbjct: 354 LIALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFK 413
Query: 291 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 350
+ L+ATDVAARGLDI V+ VINY P YVHR+GRT RAG++G A TF T
Sbjct: 414 EGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTPL 473
Query: 351 DRSL---LKAIAKRAG 363
++ L L + + AG
Sbjct: 474 NKGLAGELVNVLREAG 489
>UNIPROTKB|Q9NVP1 [details] [associations]
symbol:DDX18 "ATP-dependent RNA helicase DDX18"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AK001467 EMBL:BC001238 EMBL:BC003360 EMBL:BC024739
EMBL:X98743 EMBL:CR457060 IPI:IPI00301323 PIR:S71758
RefSeq:NP_006764.3 UniGene:Hs.363492 PDB:3LY5 PDBsum:3LY5
ProteinModelPortal:Q9NVP1 SMR:Q9NVP1 IntAct:Q9NVP1
MINT:MINT-1382348 STRING:Q9NVP1 PhosphoSite:Q9NVP1 DMDM:20532388
SWISS-2DPAGE:Q9NVP1 PaxDb:Q9NVP1 PeptideAtlas:Q9NVP1 PRIDE:Q9NVP1
Ensembl:ENST00000263239 GeneID:8886 KEGG:hsa:8886 UCSC:uc002tlh.1
CTD:8886 GeneCards:GC02P118572 HGNC:HGNC:2741 HPA:HPA035400
MIM:606355 neXtProt:NX_Q9NVP1 PharmGKB:PA27207 HOVERGEN:HBG105702
InParanoid:Q9NVP1 OrthoDB:EOG4894MF PhylomeDB:Q9NVP1
ChEMBL:CHEMBL5060 ChiTaRS:DDX18 EvolutionaryTrace:Q9NVP1
GenomeRNAi:8886 NextBio:33369 ArrayExpress:Q9NVP1 Bgee:Q9NVP1
CleanEx:HS_DDX18 Genevestigator:Q9NVP1 GermOnline:ENSG00000088205
Uniprot:Q9NVP1
Length = 670
Score = 472 (171.2 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
Identities = 129/410 (31%), Positives = 210/410 (51%)
Query: 10 LRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP- 68
L+A + +G++ T IQ I L GRD+ +A TGSGKT AF +P +E L+ + + +P
Sbjct: 191 LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVE-LIVKLRFMPR 249
Query: 69 -AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATP 127
VLIL+PTRELA+Q +++++ L++GG + + L + +I+VATP
Sbjct: 250 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATP 309
Query: 128 GRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 187
GR++DH++N+ R+L++GF E+ ++++L P RRQTMLFSAT T
Sbjct: 310 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTR 369
Query: 188 DVDELIKLSLTK-PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKV 246
V++L ++SL K PL + D K +T+ + +L + K K+
Sbjct: 370 KVEDLARISLKKEPLYVGVDDD-KANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKL 428
Query: 247 IIF-SGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAAR 305
++F S + ++L L +HG Q +R F L+ TDVAAR
Sbjct: 429 MVFFSSCMSVKYHYELL-NYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAAR 487
Query: 306 GLDIIGVQTVINYACPRDLTSYVHRVGRTARA--GREGYAVTFVTDNDRSLLKAIAKRAG 363
GLDI V ++ Y P D Y+HRVGRTAR GR G+A+ + + L+ + +
Sbjct: 488 GLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELGFLRYLKQ--- 543
Query: 364 SKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKA 413
S++ + WSKI + ++ Q+ +++ L K+ EA K+
Sbjct: 544 ----SKVPLSEFDFSWSKISD-IQSQLEKLIEKNY---FLHKSAQEAYKS 585
Score = 37 (18.1 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 575 SEKKQKRTGGIG----KKPKHSFKSK 596
+E KQK+ GG G +K K KSK
Sbjct: 628 NEGKQKKRGGGGGFGYQKTKKVEKSK 653
>SGD|S000001212 [details] [associations]
symbol:DBP8 "ATPase, putative RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001212 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:U00027 GO:GO:0030686
GO:GO:0004004 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
OrthoDB:EOG4PP1RW PIR:S48908 RefSeq:NP_012039.1
ProteinModelPortal:P38719 SMR:P38719 DIP:DIP-5628N IntAct:P38719
MINT:MINT-485349 STRING:P38719 PaxDb:P38719 PeptideAtlas:P38719
EnsemblFungi:YHR169W GeneID:856574 KEGG:sce:YHR169W CYGD:YHR169w
GeneTree:ENSGT00700000105515 OMA:FRNLCAI NextBio:982426
Genevestigator:P38719 GermOnline:YHR169W GO:GO:0000480
Uniprot:P38719
Length = 431
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 136/377 (36%), Positives = 188/377 (49%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS+ L + A+ ++PT IQ ACIP L GRD G A TGSGKT AFA P L +
Sbjct: 7 LGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTKWSE 66
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P + + +LTPTRELA+Q+ + +IR ++VGG S Q L+ P
Sbjct: 67 DPSGMFGV---VLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQRKPHF 123
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXR---LLELGFSAEIHELVR-LCPK-RRQ 177
++ATPGR+ H+ +S LL F+ + + L PK +RQ
Sbjct: 124 IIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPKDKRQ 183
Query: 178 TMLFSATLTEDVDELIKLSLTK---PL---RLSADPSAKRPSTLTXXXXXXXXXXXXNQE 231
T+LF+AT+T+ V L + K PL ++ + + PSTL +E
Sbjct: 184 TLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPEHV---KE 240
Query: 232 AVLLSL--CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 289
A L L C + IIF A L+ ++ A LH + Q +R +L F
Sbjct: 241 AYLYQLLTCEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRF 300
Query: 290 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 349
R LIATDVA+RGLDI V+ V+NY P D ++HR GRTARAGR G A++FVT
Sbjct: 301 RANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQ 360
Query: 350 NDRSLLKAIAKRAGSKL 366
D S ++AI R K+
Sbjct: 361 RDVSRIQAIEDRINKKM 377
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 126/372 (33%), Positives = 194/372 (52%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL +S +++A + G K PIQ A + A+ GRD+ G A TG+GKT AF +P +++++
Sbjct: 108 ELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 167
Query: 62 -YRPK----RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 116
Y K R P L+L PTRELA QV + A D C + GG Q L
Sbjct: 168 KYNAKHGRGRNPLC--LVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRQL 223
Query: 117 RSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRR 176
D+ V TPGR+ID ++ + ++L++GF+ ++ ++ P++R
Sbjct: 224 DYGVDVAVGTPGRVIDLMKRG-ALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKR 282
Query: 177 QTMLFSATLTEDVDELIKLSLTKPLR--LSADPSAKRPSTLTXXXXXXXXXXXXNQEAVL 234
Q+M+FSAT+ + L K L PL L D K +T + L
Sbjct: 283 QSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPL 342
Query: 235 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQH 293
++ +K K I+F+ TK+ A RL + LA + K LHG+++Q+QR L FR H
Sbjct: 343 VTEHAKG--GKCIVFTQTKRDADRLS--YALARSFKCEALHGDISQSQRERTLAGFRDGH 398
Query: 294 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 353
+ L+ATDVAARGLD+ V +I+Y P + ++VHR GRT RAG++G A+ + +
Sbjct: 399 FNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSR 458
Query: 354 LLKAIAKRAGSK 365
+K I + GS+
Sbjct: 459 AVKIIEREVGSR 470
>WB|WBGene00015232 [details] [associations]
symbol:B0511.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0043652 "engulfment of apoptotic cell"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0040007 GO:GO:0002119 GO:GO:0003723 GO:GO:0043652
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 HSSP:P10081 EMBL:FO080219
PIR:T33113 RefSeq:NP_492779.1 ProteinModelPortal:O61815 SMR:O61815
DIP:DIP-27278N MINT:MINT-1068292 STRING:O61815 PaxDb:O61815
EnsemblMetazoa:B0511.6.1 EnsemblMetazoa:B0511.6.2 GeneID:172954
KEGG:cel:CELE_B0511.6 UCSC:B0511.6.1 CTD:172954 WormBase:B0511.6
InParanoid:O61815 NextBio:877669 Uniprot:O61815
Length = 544
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 128/395 (32%), Positives = 210/395 (53%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+E ++ LL+A + LG++ T IQA I L G+D+ SA TGSGKT AF LP +E L
Sbjct: 71 LEGKVNANLLKAVQGLGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPAIE-L 129
Query: 61 LYRP--KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
L++ K+ V+I++PTREL++Q + ++ ++ + +++ LV+GG + ++ L
Sbjct: 130 LHKLNWKQHNGTGVIIVSPTRELSMQTYGVLSELLEGSNLTYGLVMGGSNRSAEKDKLAK 189
Query: 119 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 178
I+VATPGR++DHL+N+ + R+L++GF E+ +++R PK+RQ+
Sbjct: 190 GVSILVATPGRLLDHLQNTDNFLVRNMKCLIIDEADRILDIGFEIEMQQVLRHLPKQRQS 249
Query: 179 MLFSATLTEDVDELIKLSL-TKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 237
MLFSAT + VDEL+KL+L + P+R+S A+ +T+ + +L +
Sbjct: 250 MLFSATHSPKVDELVKLALHSNPVRVSVHEKAEE-ATVEGLQQGYIVAPSDKRLLLLFTF 308
Query: 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
K T KV++F + + L + +HG Q +R F + L
Sbjct: 309 LKKNKTKKVMVFFSSCNSVKFHHELLNYIDIPCMSIHGKQKQQKRTTTFFQFCQAETGIL 368
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR-EGYAVTFVTDNDRSLLK 356
+ TDVAARGLDI V ++ Y + Y+HRVGRTAR G A+ + + L+
Sbjct: 369 LCTDVAARGLDIPAVDWIVQYDPTDEPREYIHRVGRTARGTNGSGKALLVLRPEELGFLR 428
Query: 357 AIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVA 391
+ K A L E S +K + I Q+E+ ++
Sbjct: 429 YL-KAAKVTLNE---FEFSWSKVANIQSQLENLIS 459
>FB|FBgn0036104 [details] [associations]
symbol:CG6418 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
NextBio:812543 Uniprot:Q9VTC1
Length = 791
Score = 481 (174.4 bits), Expect = 6.2e-47, Sum P(2) = 6.2e-47
Identities = 117/346 (33%), Positives = 178/346 (51%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 68
L++A Y++PTPIQA +P AL+GRDI G A TGSGKTAAF P L ++ + + P
Sbjct: 280 LIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHVMDQKQLKP 339
Query: 69 AIRV--LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVAT 126
LIL PTREL++Q+++ +K + ++ GG S Q AL +I+VAT
Sbjct: 340 GDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAEIIVAT 399
Query: 127 PGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 186
PGRMID ++ + R+ +GF ++ + RQ ++FSAT
Sbjct: 400 PGRMIDMVKMK-ATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQCLMFSATFK 458
Query: 187 EDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKV 246
+ ++ L + L+ P+R+ + +T +L L V
Sbjct: 459 KRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQ-KWNWLLCHLVKFLSEGSV 517
Query: 247 IIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 306
+IF K A + + LHG++ QA R + + F+++ D L+ATDVAARG
Sbjct: 518 LIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDVAARG 577
Query: 307 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 352
LDI ++ V+NY RD+ ++ HR+GRT RAG +G A T VTD D+
Sbjct: 578 LDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAYTLVTDKDK 623
Score = 39 (18.8 bits), Expect = 6.2e-47, Sum P(2) = 6.2e-47
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 547 SNGKKSK--HSSQESNSRAKEMRELFHSDMSEK 577
S+G SK SS + R MRE F S + +
Sbjct: 704 SDGPSSKAFSSSGPATDRYTAMREAFRSQYNNQ 736
>ASPGD|ASPL0000044206 [details] [associations]
symbol:AN1949 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0030687
"preribosome, large subunit precursor" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 EMBL:BN001307
GO:GO:0003723 EMBL:AACD01000029 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_659553.1
ProteinModelPortal:Q5BBY1 STRING:Q5BBY1
EnsemblFungi:CADANIAT00008609 GeneID:2875602 KEGG:ani:AN1949.2
OrthoDB:EOG4ZKNVS Uniprot:Q5BBY1
Length = 609
Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
Identities = 120/361 (33%), Positives = 184/361 (50%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL LS L+ + +G+ T IQ IP L GRD+ G+A TGSGKT AF +P +E L
Sbjct: 132 ELGLSEKTLQGIKEMGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLS 191
Query: 62 ---YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
++P+ V++++PTRELA+Q+ + ++ +V+GG + + + L
Sbjct: 192 ALRFKPRN--GTGVIVVSPTRELALQIFGVARELLTAHSQTYGIVIGGANRRAEAEKLTK 249
Query: 119 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKR-RQ 177
++++ATPGR++DHL+N+ R+LE+GF E+ +++++ P RQ
Sbjct: 250 GVNLLIATPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIIKILPNEDRQ 309
Query: 178 TMLFSATLTEDVDELIKLSLTK-PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS 236
TMLFSAT T V++L ++SL PL ++ D K ST+ + +L S
Sbjct: 310 TMLFSATQTTKVEDLARISLRPGPLYINVD-HRKEHSTVEGLEQGYVICEADKRFLLLFS 368
Query: 237 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 296
+ K+I+F + L L +LHG Q +R F
Sbjct: 369 FLKRNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGV 428
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTAR-AGREGYAVTFVTDNDRSLL 355
LI TDVAARGLDI V +I + P D Y+HRVGRTAR A G ++ F+ ++ L
Sbjct: 429 LICTDVAARGLDIPAVDWIIQFDPPDDTRDYIHRVGRTARGANGRGRSLMFLQPSEVGFL 488
Query: 356 K 356
K
Sbjct: 489 K 489
>UNIPROTKB|I3LV06 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:FP312674 RefSeq:XP_003357711.1
Ensembl:ENSSSCT00000031167 GeneID:100621580 KEGG:ssc:100621580
Uniprot:I3LV06
Length = 607
Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
Identities = 126/379 (33%), Positives = 196/379 (51%)
Query: 17 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 76
GY PTPIQ IP+ L GRD+ SA TGSGKTAAF LP + R L + K P+ L+LT
Sbjct: 210 GYEVPTPIQMQMIPVGLLGRDLLASADTGSGKTAAFLLPVITRALVQSKA-PS--ALVLT 266
Query: 77 PTRELAVQVHSMIEKI-AQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR 135
PTRELA+Q+ +++ +R L+VGGL Q LR +++ATPGR++D ++
Sbjct: 267 PTRELAIQIERQAKELMGGLPRMRTALLVGGLPAPPQLHRLRQRVQVIIATPGRLLDIMK 326
Query: 136 NSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 195
S S +L++GF ++ +++ P+ QT+L SAT+ +++L
Sbjct: 327 QS-SVDLGNIKIVVVDEADTMLKMGFQEQVLDVLENVPQDCQTILVSATIPTRIEQLASR 385
Query: 196 SLTKPLR-LSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQ 254
L P+R L+ + + PS +L K F V++F K
Sbjct: 386 LLHDPVRVLAGEKNLPCPSVRQIVLWVEEPAKKKKLFEILND--KKLFKPPVLVFVDCKL 443
Query: 255 AAHRL-KILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQ 313
A L + + + LK+ +H +Q +R LE + D +++T V RGLD+I V+
Sbjct: 444 GADLLSEAVEKITGLKSTSMHSEKSQIERKTILEGLLEGDYDVVVSTGVLGRGLDLISVK 503
Query: 314 TVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRI 370
V+N+ P + YVH+VGR R G+ G A+TF+ +N + L IAKR GS L ++
Sbjct: 504 LVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDIAKRVKPTGSLLPPQL 563
Query: 371 VAEQSITKWSKIIEQMEDQ 389
+ + + K EQ +D+
Sbjct: 564 LNSPYLHE-QKRKEQQKDK 581
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
Identities = 131/375 (34%), Positives = 188/375 (50%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L LL+ + + T IQ IPL + GRD+ S+ TGSGKT AF LP L + L
Sbjct: 9 DLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSL 68
Query: 62 YRPKRIPAI--RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
+ K A R LIL PTRELA QV+ + + L+ GG + Q AL
Sbjct: 69 -KTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARG 127
Query: 120 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP-KRRQT 178
P +VATPGR+ DHL + S R+L+LGF+ E+ + +RRQT
Sbjct: 128 PRFIVATPGRLADHL-DHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQT 186
Query: 179 MLFSATLTE-DVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 237
++FSATL DV+++ L +P R++ ++ +T ++EA+L +
Sbjct: 187 LMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLD--HKEALLDRI 244
Query: 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
+ +VIIF+ T+ RL LKA L GNL Q QR + F + L
Sbjct: 245 LADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKIL 304
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ TDVA+RGLDI V VIN+ P+ YVHRVGRT RAG +G A++ V D K
Sbjct: 305 VTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKR 364
Query: 358 IAKRAGSKLKSRIVA 372
+ +++ ++A
Sbjct: 365 VEAFLQQEIQFEVLA 379
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
Identities = 131/375 (34%), Positives = 188/375 (50%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L LL+ + + T IQ IPL + GRD+ S+ TGSGKT AF LP L + L
Sbjct: 9 DLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSL 68
Query: 62 YRPKRIPAI--RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
+ K A R LIL PTRELA QV+ + + L+ GG + Q AL
Sbjct: 69 -KTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARG 127
Query: 120 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP-KRRQT 178
P +VATPGR+ DHL + S R+L+LGF+ E+ + +RRQT
Sbjct: 128 PRFIVATPGRLADHL-DHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQT 186
Query: 179 MLFSATLTE-DVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 237
++FSATL DV+++ L +P R++ ++ +T ++EA+L +
Sbjct: 187 LMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLD--HKEALLDRI 244
Query: 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
+ +VIIF+ T+ RL LKA L GNL Q QR + F + L
Sbjct: 245 LADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKIL 304
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ TDVA+RGLDI V VIN+ P+ YVHRVGRT RAG +G A++ V D K
Sbjct: 305 VTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKR 364
Query: 358 IAKRAGSKLKSRIVA 372
+ +++ ++A
Sbjct: 365 VEAFLQQEIQFEVLA 379
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 487 (176.5 bits), Expect = 1.0e-46, Sum P(2) = 1.0e-46
Identities = 115/336 (34%), Positives = 178/336 (52%)
Query: 18 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIR--VLIL 75
Y++PTPIQ +P+AL+GRD+ G A TGSGKTAAF P L ++ + + P +I+
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 332
Query: 76 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR 135
PTREL Q+H+ ++ + ++R V GG S Q AL+ +IVV TPGR+IDH++
Sbjct: 333 CPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVK 392
Query: 136 NSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 195
+ R+ ++GF ++ + RQT+LFSAT + +++L +
Sbjct: 393 KK-ATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451
Query: 196 SLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQA 255
L P+R+ + +T N + L T + V++F K
Sbjct: 452 ILIDPIRVVQGDIGEANEDVTQIVEILHSGSKWNW--LTRRLVEFTSSGSVLLFVTKKAN 509
Query: 256 AHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 315
A L LHG++ Q++R + + F+K+ + L+ATDVAARGLDI ++TV
Sbjct: 510 AEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTV 569
Query: 316 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
INY RD+ ++ HR+GRT RAG +G A T +T D
Sbjct: 570 INYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 605
Score = 37 (18.1 bits), Expect = 1.0e-46, Sum P(2) = 1.0e-46
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 563 AKEMRELFHSDMSEKKQKRTGGIGKK 588
+KE+ +L + +K + GG GKK
Sbjct: 624 SKELLDLAMQNAWFRKSRFKGGKGKK 649
Score = 37 (18.1 bits), Expect = 1.0e-46, Sum P(2) = 1.0e-46
Identities = 17/63 (26%), Positives = 21/63 (33%)
Query: 510 GKDKKEKAGISMVDLAYRRXXXXXXXXXXLDAGKIVKSNGKKSKHSSQESNSRAKEMREL 569
GK KK G L YR + V SN + K S+ R M+
Sbjct: 645 GKGKKLNIGGG--GLGYRERPGLGSENSDRGSNNNVMSNYEAYKPSTGAMGDRLTAMKAA 702
Query: 570 FHS 572
F S
Sbjct: 703 FQS 705
>FB|FBgn0025140 [details] [associations]
symbol:pit "pitchoune" species:7227 "Drosophila melanogaster"
[GO:0005730 "nucleolus" evidence=NAS;IDA] [GO:0016049 "cell growth"
evidence=IMP] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY EMBL:U84552 EMBL:AY071402
EMBL:AY119620 RefSeq:NP_524446.3 RefSeq:NP_732694.2
UniGene:Dm.33428 ProteinModelPortal:Q9VD51 SMR:Q9VD51
DIP:DIP-19700N MINT:MINT-1004790 STRING:Q9VD51 PaxDb:Q9VD51
EnsemblMetazoa:FBtr0084174 EnsemblMetazoa:FBtr0084175 GeneID:42595
KEGG:dme:Dmel_CG6375 UCSC:CG6375-RA CTD:42595 FlyBase:FBgn0025140
GeneTree:ENSGT00680000100037 InParanoid:Q9VD51 OrthoDB:EOG4H189W
PhylomeDB:Q9VD51 ChiTaRS:pit GenomeRNAi:42595 NextBio:829597
Bgee:Q9VD51 GermOnline:CG6375 Uniprot:Q9VD51
Length = 680
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 129/392 (32%), Positives = 203/392 (51%)
Query: 5 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE---RLL 61
+S LRA + +G+++ T IQ+ + L GRD+ G+A TGSGKT AF +P +E +L
Sbjct: 194 VSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLR 253
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ P+ V+I++PTREL++Q +++++ LV+GG + +++ L +
Sbjct: 254 FMPRN--GTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGIN 311
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL+NS R+LE+GF E+ +++ L PKRRQTMLF
Sbjct: 312 ILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLF 371
Query: 182 SATLTEDVDELIKLSL-TKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSK 240
SAT T ++ L KL+L ++P+ + + + +T+ + VL + K
Sbjct: 372 SATQTARIEALSKLALKSEPIYVGVHDN-QDTATVDGLEQGYIVCPSEKRLLVLFTFLKK 430
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
KV++F + + LF L +HG Q +R F L+ T
Sbjct: 431 NRKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCT 490
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTAR-AGREGYAVTFVTDNDRSLLKAIA 359
DVAARGLDI V ++ Y P D Y+HRVGRTAR +G G+A+ + + L+ +
Sbjct: 491 DVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEELGFLRYL- 549
Query: 360 KRAGSKLKSRIVAEQSITKWSKIIEQMEDQVA 391
K A L E S K + I Q+E +A
Sbjct: 550 KAAKVPLNE---FEFSWQKIADIQLQLEKLIA 578
>UNIPROTKB|Q8EHT1 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 135/404 (33%), Positives = 204/404 (50%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L+ L +A PT +Q IP L GRD+ + TGSGKT AF LP L+ L
Sbjct: 21 ELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQILW 79
Query: 62 YR------PKRIPAIR--VLILTPTRELAVQV----HSMIEKIAQFTDIRCCLVVGGLST 109
+ K +PA + L+L PTRELA+QV H++ +++ + L+ GG++
Sbjct: 80 QQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGGVAL 139
Query: 110 KMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELV 169
+ Q L + P +VVATPGR++D L RLLE+GF ++ +L+
Sbjct: 140 EQQLADLSAKPQLVVATPGRLLD-LCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQKLM 198
Query: 170 RLCPKRRQTMLFSATLTEDVDELI-KLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXX 228
+ PKR+QT+LFSATL E +D L KL PL++ A + R + +
Sbjct: 199 AMMPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEA---STRNAVVGEIEEQLYLVNKG 255
Query: 229 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALEL 288
++ L++L + +V++F + A + A + AA LHG Q R + L
Sbjct: 256 SKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLAD 315
Query: 289 FRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 348
F+ + L+ATD+ ARG+ + + VIN P YVHR+GRTARAG +G A++ V
Sbjct: 316 FKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLVC 375
Query: 349 DNDRSLLKAIAKRAGSKLKSRIVAEQSIT-KWS-KIIEQMEDQV 390
+ L AI L +A+ +T K S KII+ E++V
Sbjct: 376 HGEMPNLTAIRNLTARALPLVFLADFPVTDKPSEKIIDGAENKV 419
>TIGR_CMR|SO_1136 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 135/404 (33%), Positives = 204/404 (50%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L+ L +A PT +Q IP L GRD+ + TGSGKT AF LP L+ L
Sbjct: 21 ELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQILW 79
Query: 62 YR------PKRIPAIR--VLILTPTRELAVQV----HSMIEKIAQFTDIRCCLVVGGLST 109
+ K +PA + L+L PTRELA+QV H++ +++ + L+ GG++
Sbjct: 80 QQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGGVAL 139
Query: 110 KMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELV 169
+ Q L + P +VVATPGR++D L RLLE+GF ++ +L+
Sbjct: 140 EQQLADLSAKPQLVVATPGRLLD-LCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQKLM 198
Query: 170 RLCPKRRQTMLFSATLTEDVDELI-KLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXX 228
+ PKR+QT+LFSATL E +D L KL PL++ A + R + +
Sbjct: 199 AMMPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEA---STRNAVVGEIEEQLYLVNKG 255
Query: 229 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALEL 288
++ L++L + +V++F + A + A + AA LHG Q R + L
Sbjct: 256 SKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLAD 315
Query: 289 FRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 348
F+ + L+ATD+ ARG+ + + VIN P YVHR+GRTARAG +G A++ V
Sbjct: 316 FKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLVC 375
Query: 349 DNDRSLLKAIAKRAGSKLKSRIVAEQSIT-KWS-KIIEQMEDQV 390
+ L AI L +A+ +T K S KII+ E++V
Sbjct: 376 HGEMPNLTAIRNLTARALPLVFLADFPVTDKPSEKIIDGAENKV 419
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 494 (179.0 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 125/369 (33%), Positives = 192/369 (52%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP--KR 66
L++ G+ PTPIQ+ P+AL GRDI G A TGSGKT AF LP++ + +P +
Sbjct: 395 LMKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQPVLRE 454
Query: 67 IPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVAT 126
VL+L PTRELA+Q+ K + I V GG S Q AL+ +IV+AT
Sbjct: 455 DDGPIVLVLAPTRELALQIQEETNKFGGTSQISNTCVYGGASKHTQVAALKKGVEIVIAT 514
Query: 127 PGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 186
PGR+ID L + + R+L++GF +I +++ RQT++FSAT
Sbjct: 515 PGRLIDILESGKTNLRRVTYLVLDEAD-RMLDMGFEPQIRKIISQIRPDRQTLMFSATWP 573
Query: 187 EDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKV 246
++V L LT +++ S + + +E +L L S KV
Sbjct: 574 KEVQALAHDFLTDHIQVHIG-STEITANHNVRQIVEVCQDFEKKERMLSFLGSVGRDEKV 632
Query: 247 IIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 306
I+F+ T++ L+ + + K+ +HGN +Q +R L F+ V +IATDVA+RG
Sbjct: 633 IVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMIATDVASRG 692
Query: 307 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 366
LDI ++ V+NY P + Y+HR+GRTARAG G + + +T ++ L + K ++
Sbjct: 693 LDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLANELIKVL-TEA 751
Query: 367 KSRIVAEQS 375
K +I E S
Sbjct: 752 KQKIPIELS 760
>RGD|1308990 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1308990
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 CTD:1662 OrthoDB:EOG4BK536 OMA:ADKVIEP
IPI:IPI00869603 RefSeq:NP_001100290.1 UniGene:Rn.99481
Ensembl:ENSRNOT00000017683 GeneID:300710 KEGG:rno:300710
UCSC:RGD:1308990 NextBio:647348 Uniprot:D3ZBY5
Length = 874
Score = 496 (179.7 bits), Expect = 1.2e-46, P = 1.2e-46
Identities = 118/351 (33%), Positives = 183/351 (52%)
Query: 5 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP 64
LS+ L+ + Y T IQ I LAL G+D+ G+A TGSGKT AF +P LE L YR
Sbjct: 76 LSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEAL-YRL 134
Query: 65 K--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+ + VLI++PTRELA Q ++ K+ + D L++GG K + + ++ +I
Sbjct: 135 QWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNI-NI 193
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+V TPGR++ H+ ++ R+L++GF+ ++ ++ PK+RQT+LFS
Sbjct: 194 LVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTLLFS 253
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTF 242
AT T+ V +L +LSL P + AK ST + +VL S
Sbjct: 254 ATQTKSVKDLARLSLKDPEYVWVHEKAKY-STPATLEQNYIICELHQKISVLFSFLRSHL 312
Query: 243 TSK-VIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
T K ++ FS K+ + ++ L + LHG Q +R+E F ++ L AT
Sbjct: 313 TKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRAAVLFAT 372
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
D+AARGLD V V+ + CP D +Y+HR GRTAR +G A+ + ++
Sbjct: 373 DIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSE 423
>DICTYBASE|DDB_G0292992 [details] [associations]
symbol:helA "putative RNA helicase" species:44689
"Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292992 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000199 KO:K14808 HSSP:P10081 EMBL:X81822
RefSeq:XP_629281.1 ProteinModelPortal:Q54CD8 STRING:Q54CD8
EnsemblProtists:DDB0215372 GeneID:8629004 KEGG:ddi:DDB_G0292992
OMA:RLPKDGH ProtClustDB:CLSZ2429315 Uniprot:Q54CD8
Length = 1091
Score = 363 (132.8 bits), Expect = 1.2e-46, Sum P(3) = 1.2e-46
Identities = 79/214 (36%), Positives = 123/214 (57%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++L++ LL+A G++ PTPIQ IP+ L G DI G A TGSGKT AF +P +++L
Sbjct: 235 MDLTKNLLKAILKKGFNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMIQKLGD 294
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+ +R +IL+PTRELA+Q +++ +Q T +R L+VGG S + Q T L PDI
Sbjct: 295 HSTTV-GVRAVILSPTRELAIQTFKVVKDFSQGTQLRTILIVGGDSMEDQFTDLARNPDI 353
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR++ HL + RL E+GF+ ++ E++ + RQT+LFS
Sbjct: 354 IIATPGRLMHHLLET-GMSLSKVQYIVFDEADRLFEMGFNEQLTEILSKLSENRQTLLFS 412
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLT 216
ATL + + ++ L P ++ D K L+
Sbjct: 413 ATLPSLLVDFVRAGLNNPKLINLDTDTKISENLS 446
Score = 185 (70.2 bits), Expect = 1.2e-46, Sum P(3) = 1.2e-46
Identities = 59/189 (31%), Positives = 88/189 (46%)
Query: 244 SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA 303
S IIF TK + IL A + + +HG L R L FR V ++ TD+A
Sbjct: 498 SSTIIFVSTKYHVEFIHILLERAGIASTYIHGYLDPVARKINLAKFRSHQVGVMVVTDLA 557
Query: 304 ARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAG 363
ARG+DI + VIN+ P ++HRVGR ARAGR G A + V+ ++ + + G
Sbjct: 558 ARGIDIPLLDNVINFDFPPKEKIFIHRVGRVARAGRSGIAYSLVSPDEVPYMIDLHLYLG 617
Query: 364 SKLKSRIVAE-QSIT--KWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMI--A 418
K ++ E Q+I K+S + + I + + RK +E I A
Sbjct: 618 RKFLNKFQYEGQTINDPKYS-FYGTIPQTI--IDRETEFVNVQRKECIELLSLTKTIHNA 674
Query: 419 HKEEIFARP 427
HK+ + RP
Sbjct: 675 HKKYLSTRP 683
Score = 47 (21.6 bits), Expect = 1.2e-46, Sum P(3) = 1.2e-46
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 546 KSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQK-RTGGIGKKPKHSFKSKS 597
K++ K H + S K+ ++ + SEK++K R PK S KSKS
Sbjct: 1018 KASHAKGSHGLKGRPSELKDKNQI-SKNRSEKERKMRVNKTKGNPKGS-KSKS 1068
Score = 46 (21.3 bits), Expect = 3.9e-31, Sum P(3) = 3.9e-31
Identities = 26/127 (20%), Positives = 48/127 (37%)
Query: 339 REGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKI----IEQMEDQVAAIL 394
R+G V+ D DR K + + KL + + +W K I+++ + +
Sbjct: 934 RKGKFVSSQADADRKNSKKLVRNEAGKLVEAKKSHKGYEEWKKKTHGRIQRVGEDENSKY 993
Query: 395 QXXXXXXILRKAE---MEATKAENMIAHKEE---IFARPKRTWFVTEKEKKLAVKADKAS 448
Q + +K E K +N +H + + RP + K + K K
Sbjct: 994 QPNQKEYLPQKWRGQGREKEKKDNKASHAKGSHGLKGRPSELKDKNQISKNRSEKERKMR 1053
Query: 449 IEKGKGS 455
+ K KG+
Sbjct: 1054 VNKTKGN 1060
Score = 41 (19.5 bits), Expect = 5.2e-46, Sum P(3) = 5.2e-46
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 555 SSQESNSRAKEM-RELFHSDMSE 576
+S ESN RAK M + +H +S+
Sbjct: 685 ASHESNRRAKLMDKSKYHPMLSD 707
Score = 37 (18.1 bits), Expect = 1.4e-45, Sum P(3) = 1.4e-45
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 502 QVDKLQGSGKDKKEKAG 518
+V+K +G+ K K K+G
Sbjct: 1053 RVNKTKGNPKGSKSKSG 1069
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 480 (174.0 bits), Expect = 1.3e-46, Sum P(2) = 1.3e-46
Identities = 114/336 (33%), Positives = 177/336 (52%)
Query: 18 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIR--VLIL 75
Y++PTPIQ +P+A++GRD+ G A TGSGKTAAF P L ++ + + P +I+
Sbjct: 273 YTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 332
Query: 76 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR 135
PTREL Q+HS ++ + ++R V GG S Q AL+ +IVV TPGR+IDH++
Sbjct: 333 CPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVK 392
Query: 136 NSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 195
+ R+ ++GF ++ + RQT+LFSAT + +++L +
Sbjct: 393 KK-ATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451
Query: 196 SLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQA 255
L P+R+ + +T + L T + V++F K
Sbjct: 452 ILIDPIRVVQGDIGEANEDVTQIVEIFPSGPS-KWNWLTRRLVEFTSSGSVLLFVTKKAN 510
Query: 256 AHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 315
A L LHG++ Q++R + + F+K+ + L+ATDVAARGLDI ++TV
Sbjct: 511 AEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTV 570
Query: 316 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
INY RD+ ++ HR+GRT RAG +G A T +T D
Sbjct: 571 INYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
Score = 43 (20.2 bits), Expect = 1.3e-46, Sum P(2) = 1.3e-46
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 563 AKEMRELFHSDMSEKKQKRTGGIGKKP 589
+KE+ +L + +K + GG GKKP
Sbjct: 625 SKELLDLAMQNPWFRKSRFKGGKGKKP 651
Score = 41 (19.5 bits), Expect = 2.2e-46, Sum P(2) = 2.2e-46
Identities = 18/63 (28%), Positives = 20/63 (31%)
Query: 510 GKDKKEKAGISMVDLAYRRXXXXXXXXXXLDAGKIVKSNGKKSKHSSQESNSRAKEMREL 569
GK KK G L YR V SN + K SS R M+
Sbjct: 646 GKGKKPNIGGG--GLGYRERPGLGSESSDRGNNNSVMSNYEAYKPSSGAMGDRLTAMKAA 703
Query: 570 FHS 572
F S
Sbjct: 704 FQS 706
>UNIPROTKB|P0A8J8 [details] [associations]
symbol:rhlB "RhlB" species:83333 "Escherichia coli K-12"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006401 "RNA
catabolic process" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0006401 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:M87049 GO:GO:0004004 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:M83316 EMBL:X56310
PIR:G65181 RefSeq:NP_418227.1 RefSeq:YP_491659.1
ProteinModelPortal:P0A8J8 SMR:P0A8J8 DIP:DIP-35644N IntAct:P0A8J8
PaxDb:P0A8J8 PRIDE:P0A8J8 EnsemblBacteria:EBESCT00000001927
EnsemblBacteria:EBESCT00000015978 GeneID:12934326 GeneID:948290
KEGG:ecj:Y75_p3395 KEGG:eco:b3780 PATRIC:32123051 EchoBASE:EB0837
EcoGene:EG10844 HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY
ProtClustDB:PRK04837 BioCyc:EcoCyc:EG10844-MONOMER
BioCyc:ECOL316407:JW3753-MONOMER Genevestigator:P0A8J8
Uniprot:P0A8J8
Length = 421
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 132/369 (35%), Positives = 187/369 (50%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP---- 64
++ A E G+ TPIQA +PL L GRD+ G A TG+GKT AF T LL P
Sbjct: 20 VVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIAD 79
Query: 65 KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVV 124
+++ R LI+ PTRELAVQ+H+ E +A+ T ++ L GG Q L S DI++
Sbjct: 80 RKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILI 139
Query: 125 ATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP--KRRQTMLFS 182
T GR+ID+ + + R+ +LGF +I L R P +R MLFS
Sbjct: 140 GTTGRLIDYAKQN-HINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFS 198
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLL--SLCSK 240
ATL+ V EL + + +P K T N+E + L +L +
Sbjct: 199 ATLSYRVRELAFEQMNNAEYIEVEPEQK-----TGHRIKEELFYPSNEEKMRLLQTLIEE 253
Query: 241 TFTSKVIIFSGTKQAAHRLKILFG-LAA--LKAAELHGNLTQAQRLEALELFRKQHVDFL 297
+ + IIF+ TK HR + ++G LAA + L G++ Q +RL L+ F + +D L
Sbjct: 254 EWPDRAIIFANTK---HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDIL 310
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATDVAARGL I V V NY P D YVHR+GRT RAG G++++ + L A
Sbjct: 311 VATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPA 370
Query: 358 IAKRAGSKL 366
I G +
Sbjct: 371 IETYIGHSI 379
>UNIPROTKB|G3X7G8 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:DAAA02043967 EMBL:DAAA02043968
RefSeq:NP_001179318.1 UniGene:Bt.41740 Ensembl:ENSBTAT00000027398
GeneID:514901 KEGG:bta:514901 NextBio:20871562 Uniprot:G3X7G8
Length = 620
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 127/387 (32%), Positives = 199/387 (51%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 68
L R +A GY PTPIQ IP+ L GRD+ SA TGSGKTAAF LP + R L + K P
Sbjct: 215 LNRNLKASGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVILRALSQSKS-P 273
Query: 69 AIRVLILTPTRELAVQVHSMIEKIAQ-FTDIRCCLVVGGLSTKMQETALRSMPDIVVATP 127
+ L+LTPTRELA+Q+ +++ +R L+VGGL Q LR +++ATP
Sbjct: 274 S--GLVLTPTRELAIQIERQAKELMSGLPCLRTALLVGGLPAPPQRHRLRQRIQVIIATP 331
Query: 128 GRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 187
GR++D ++ S +L++GF ++ +++ P QT+L SAT+
Sbjct: 332 GRLLDIIKQR-SVELGSIKIVVVDEADTMLKMGFQQQVLDVLEQLPHDCQTVLASATIPA 390
Query: 188 DVDELIKLSLTKPLRLSA-DPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKV 246
V++L L P+ ++A + + PS +L K F V
Sbjct: 391 SVEQLACQLLRDPVAITAGERNLPCPSVRQIVLWVEEPAKKKKLFEILND--KKLFKPPV 448
Query: 247 IIFSGTKQAAHRL-KILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAAR 305
++F K A L + + + LK+ +H + TQ +R L+ + D +++T V R
Sbjct: 449 LVFVDCKLGADLLSEAVQKITGLKSTSVHSDKTQMERKNILKGLLEGDYDVVVSTGVLGR 508
Query: 306 GLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA--- 362
GLD++GV+ V+N+ P + YVH++GR R G+ G A+TF+ +N + L IAKR
Sbjct: 509 GLDLVGVKLVVNFDMPSSMDEYVHQIGRVGRLGQHGTAITFINNNSKRLFWDIAKRVKPT 568
Query: 363 GSKLKSRIVAEQSITKWSKIIEQMEDQ 389
GS L +++ + K EQ +D+
Sbjct: 569 GSLLPPQLLNSPYLHD-QKRKEQQKDR 594
>MGI|MGI:1914192 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914192
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AK075864 EMBL:AK019845 EMBL:BC028246
EMBL:BC103776 IPI:IPI00459381 RefSeq:NP_080136.2 UniGene:Mm.44219
ProteinModelPortal:Q8K363 SMR:Q8K363 STRING:Q8K363
PhosphoSite:Q8K363 PaxDb:Q8K363 PRIDE:Q8K363
Ensembl:ENSMUST00000001724 GeneID:66942 KEGG:mmu:66942
InParanoid:Q8K363 NextBio:323084 Bgee:Q8K363 CleanEx:MM_DDX18
Genevestigator:Q8K363 GermOnline:ENSMUSG00000001674 Uniprot:Q8K363
Length = 660
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 132/410 (32%), Positives = 210/410 (51%)
Query: 10 LRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP- 68
L+A E +G+ + T IQ I L GRD+ +A TGSGKT AF +P +E L+ + K +P
Sbjct: 181 LKAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIE-LIVKLKFMPR 239
Query: 69 -AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATP 127
VLIL+PTRELA+Q +++++ L++GG + + L + +I+VATP
Sbjct: 240 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLLNGINIIVATP 299
Query: 128 GRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 187
GR++DH++N+ R+L++GF E+ ++++L P RRQTMLFSAT T
Sbjct: 300 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARRQTMLFSATQTR 359
Query: 188 DVDELIKLSLTK-PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKV 246
V++L ++SL K PL + D K +T+ + +L + K KV
Sbjct: 360 KVEDLARISLKKEPLYVGVDDD-KEVATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKV 418
Query: 247 IIF-SGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAAR 305
++F S + ++L L +HG Q +R F L+ TDVAAR
Sbjct: 419 MVFFSSCMSVKYHYELL-NYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVAAR 477
Query: 306 GLDIIGVQTVINYACPRDLTSYVHRVGRTARA--GREGYAVTFVTDNDRSLLKAIAKRAG 363
GLDI V ++ Y P D Y+HRVGRTAR GR G+A+ + + L+ + +
Sbjct: 478 GLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELGFLRYLKQ--- 533
Query: 364 SKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKA 413
S++ Q WSK+ + ++ Q+ +++ L K+ EA K+
Sbjct: 534 ----SKVPLNQFDFSWSKVSD-IQSQLEKLIEKNY---FLHKSAQEAYKS 575
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 491 (177.9 bits), Expect = 1.7e-46, P = 1.7e-46
Identities = 135/404 (33%), Positives = 206/404 (50%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L+L + L + E G + PIQ A + AL GRDI A TG+GKT AF +P ++RL
Sbjct: 106 KLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLT 165
Query: 62 -----Y----RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 112
Y R R+P + L+L PTRELA QV I++ A + C V GG+S +Q
Sbjct: 166 EEAGDYTAFRRSGRLP--KFLVLAPTRELAKQVEKEIKESAPYLSTVC--VYGGVSYTIQ 221
Query: 113 ETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLC 172
++AL D+VV TPGR+ID L S ++L +GF + ++
Sbjct: 222 QSALTRGVDVVVGTPGRIID-LIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENL 280
Query: 173 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLS--ADPSAKRPSTLTXXXXXXXXXXXXNQ 230
P +RQ+MLFSAT+ V +L + L PL + D K +
Sbjct: 281 PTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTI 340
Query: 231 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 290
+ L+++ +K K I+F+ TK+ A + + + A LHG+++Q QR L FR
Sbjct: 341 LSDLITVYAKG--GKTIVFTQTKRDADEVSLALSNSIATEA-LHGDISQHQRERTLNAFR 397
Query: 291 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 350
+ L+ATDVA+RGLDI V VI+Y P D ++VHR GRT RAG+EG A+ T +
Sbjct: 398 QGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSS 457
Query: 351 DRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAIL 394
+ ++++ + G + ++ ++ ++E DQV A L
Sbjct: 458 QKRTVRSLERDVGCHFE--FISPPTV---GDLLESSADQVVATL 496
>UNIPROTKB|E2RFA3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY GeneTree:ENSGT00680000100037
CTD:8886 EMBL:AAEX03011884 RefSeq:XP_533327.3
Ensembl:ENSCAFT00000007958 GeneID:476120 KEGG:cfa:476120
Uniprot:E2RFA3
Length = 669
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 131/410 (31%), Positives = 212/410 (51%)
Query: 10 LRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP- 68
L+A + +G++ T IQ I L GRD+ +A TGSGKT AF +P +E L+ + K +P
Sbjct: 190 LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVE-LIVKLKFMPR 248
Query: 69 -AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATP 127
VLIL+PTRELA+Q +++++ + L++GG + + L + +I+VATP
Sbjct: 249 NGTGVLILSPTRELAMQTFGVLKELMMYHVHTYGLIMGGSNRSAEAQKLGNGINIIVATP 308
Query: 128 GRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 187
GR++DH++N+ R+L++GF E+ ++++L P RRQTMLFSAT T
Sbjct: 309 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTR 368
Query: 188 DVDELIKLSLTK-PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKV 246
V++L ++SL K PL + D K +T+ + +L + K K+
Sbjct: 369 KVEDLARISLKKEPLYVGVDDD-KANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKL 427
Query: 247 IIF-SGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAAR 305
++F S K + ++L L +HG Q +R F L+ TDVAAR
Sbjct: 428 MVFFSSCKSVKYHYELL-NYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAAR 486
Query: 306 GLDIIGVQTVINYACPRDLTSYVHRVGRTARA--GREGYAVTFVTDNDRSLLKAIAKRAG 363
GLDI V ++ Y P D Y+HRVGRTAR GR G+A+ + + L+ + +
Sbjct: 487 GLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILHPEELGFLRYLKQ--- 542
Query: 364 SKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKA 413
S++ + WSKI + ++ Q+ +++ L K+ EA K+
Sbjct: 543 ----SKVPLSEFEFSWSKISD-IQSQLEKLIEKNY---FLHKSAQEAYKS 584
>TAIR|locus:2087832 [details] [associations]
symbol:PMH1 "putative mitochondrial RNA helicase 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
Length = 610
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 126/370 (34%), Positives = 191/370 (51%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L +S +++A + G K PIQ A + A+ GRD+ G A TG+GKT AF +P +++++
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 179
Query: 62 -YRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
+ K R + L+L PTRELA QV + A D C + GG Q L
Sbjct: 180 KFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRELNY 237
Query: 119 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 178
D+ V TPGR+ID ++ + ++L++GF+ ++ +++ P +RQ+
Sbjct: 238 GIDVAVGTPGRIIDLMKRG-ALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQS 296
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLS--ADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS 236
M+FSAT+ + L K L PL + D K +T + L+
Sbjct: 297 MMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVK 356
Query: 237 LCSKTFTSKVIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQHVD 295
K K I+F+ TK+ A RL FGLA + K LHG+++QAQR L FR +
Sbjct: 357 EHGKG--GKCIVFTQTKRDADRLA--FGLAKSYKCEALHGDISQAQRERTLAGFRDGNFS 412
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARGLD+ V VI+Y P + ++VHR GRT RAG++G A+ + +
Sbjct: 413 ILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAV 472
Query: 356 KAIAKRAGSK 365
K I K GS+
Sbjct: 473 KMIEKEVGSR 482
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 122/350 (34%), Positives = 177/350 (50%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
LNL LL E +G++ TPIQA +P L G+D+ G TGSGKTAAF L L L
Sbjct: 9 LNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNV 68
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ-FTDIRCCLVVGGLSTKMQETALRSMPD 121
+ R+ A L+L PTRELA QV + I + + +I+ + GG+ Q +L
Sbjct: 69 KRFRVQA---LVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAH 125
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+V TPGR++DHL R+LE+GF + ++ P RQT+LF
Sbjct: 126 ILVGTPGRILDHLSKDR-IDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT ++++ + S+T+ L A ++ EA+ L
Sbjct: 185 SATYPASIEQIAQ-SVTRNA-LMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQ 242
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
TS V+ F TK+ + + ELHG++ Q +R +AL F + + L+ATD
Sbjct: 243 PTSSVV-FCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
VAARGLD+ + V NY RD +VHR+GRT RAG +G A +F +DN+
Sbjct: 302 VAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNE 351
>RGD|1549712 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1549712 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AC128353 EMBL:BC083919 IPI:IPI00367078
RefSeq:NP_001006997.1 UniGene:Rn.26598 STRING:Q5XHY0
Ensembl:ENSRNOT00000037203 GeneID:308490 KEGG:rno:308490
UCSC:RGD:1549712 InParanoid:Q5XHY0 NextBio:658990
Genevestigator:Q5XHY0 Uniprot:Q5XHY0
Length = 674
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 133/410 (32%), Positives = 209/410 (50%)
Query: 10 LRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP- 68
L+A E +G+ T IQ I L GRD+ +A TGSGKT AF +P +E L+ + K +P
Sbjct: 195 LKAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIE-LIVKLKFMPR 253
Query: 69 -AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATP 127
VLIL+PTRELA+Q +++++ L++GG + + L + +IVVATP
Sbjct: 254 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLLNGINIVVATP 313
Query: 128 GRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 187
GR++DH++N+ R+L++GF E+ ++++L P RRQTMLFSAT T
Sbjct: 314 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARRQTMLFSATQTR 373
Query: 188 DVDELIKLSLTK-PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKV 246
V++L ++SL K PL + D K +T+ + +L + K KV
Sbjct: 374 KVEDLARISLKKEPLYVGVDDD-KEVATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKV 432
Query: 247 IIF-SGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAAR 305
++F S + ++L L +HG Q +R F L+ TDVAAR
Sbjct: 433 MVFFSSCMSVKYHYELL-NYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVAAR 491
Query: 306 GLDIIGVQTVINYACPRDLTSYVHRVGRTARA--GREGYAVTFVTDNDRSLLKAIAKRAG 363
GLDI V ++ Y P D Y+HRVGRTAR GR G+A+ + + L+ + +
Sbjct: 492 GLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELGFLRYLKQ--- 547
Query: 364 SKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKA 413
S++ Q WSK+ + ++ Q+ +++ L K+ EA K+
Sbjct: 548 ----SKVPLNQFDFSWSKVSD-IQSQLEKLIEKNY---FLHKSAQEAYKS 589
>UNIPROTKB|D4A824 [details] [associations]
symbol:Ddx18 "Protein Ddx18" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1549712 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
EMBL:AC128353 IPI:IPI00393022 Ensembl:ENSRNOT00000028172
ArrayExpress:D4A824 Uniprot:D4A824
Length = 662
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 133/410 (32%), Positives = 209/410 (50%)
Query: 10 LRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP- 68
L+A E +G+ T IQ I L GRD+ +A TGSGKT AF +P +E L+ + K +P
Sbjct: 183 LKAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIE-LIVKLKFMPR 241
Query: 69 -AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATP 127
VLIL+PTRELA+Q +++++ L++GG + + L + +IVVATP
Sbjct: 242 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLLNGINIVVATP 301
Query: 128 GRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 187
GR++DH++N+ R+L++GF E+ ++++L P RRQTMLFSAT T
Sbjct: 302 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARRQTMLFSATQTR 361
Query: 188 DVDELIKLSLTK-PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKV 246
V++L ++SL K PL + D K +T+ + +L + K KV
Sbjct: 362 KVEDLARISLKKEPLYVGVDDD-KEVATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKV 420
Query: 247 IIF-SGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAAR 305
++F S + ++L L +HG Q +R F L+ TDVAAR
Sbjct: 421 MVFFSSCMSVKYHYELL-NYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVAAR 479
Query: 306 GLDIIGVQTVINYACPRDLTSYVHRVGRTARA--GREGYAVTFVTDNDRSLLKAIAKRAG 363
GLDI V ++ Y P D Y+HRVGRTAR GR G+A+ + + L+ + +
Sbjct: 480 GLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELGFLRYLKQ--- 535
Query: 364 SKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKA 413
S++ Q WSK+ + ++ Q+ +++ L K+ EA K+
Sbjct: 536 ----SKVPLNQFDFSWSKVSD-IQSQLEKLIEKNY---FLHKSAQEAYKS 577
>UNIPROTKB|Q08DT0 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP EMBL:DAAA02040206 EMBL:DAAA02040207
EMBL:DAAA02040208 EMBL:DAAA02040209 EMBL:DAAA02040210
EMBL:DAAA02040211 EMBL:DAAA02040212 EMBL:DAAA02040213
EMBL:DAAA02040214 EMBL:DAAA02040215 EMBL:DAAA02040216
EMBL:DAAA02040217 EMBL:BC123579 IPI:IPI00717487
RefSeq:NP_001070349.1 UniGene:Bt.63620 SMR:Q08DT0
Ensembl:ENSBTAT00000003086 GeneID:528483 KEGG:bta:528483
InParanoid:Q08DT0 NextBio:20874836 Uniprot:Q08DT0
Length = 876
Score = 493 (178.6 bits), Expect = 2.6e-46, P = 2.6e-46
Identities = 122/383 (31%), Positives = 198/383 (51%)
Query: 5 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP 64
LS+ L+ + Y T IQ I LAL G+D+ G+A TGSGKT AF +P LE L YR
Sbjct: 76 LSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEAL-YRL 134
Query: 65 KRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+ A + VLI++PTRELA Q ++ K+ + D L++GG K + + ++ +I
Sbjct: 135 QWTSADGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNI-NI 193
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+V TPGR++ H+ ++ R+L++GF+ ++ ++ PK+RQT+LFS
Sbjct: 194 LVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTLLFS 253
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTF 242
AT T+ V +L +LSL P + AK ST + +VL S
Sbjct: 254 ATQTKSVKDLARLSLKNPEYVWVHEKAKY-STPATLEQNYIVCELQQKISVLYSFLRSHL 312
Query: 243 TSK-VIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K ++ FS K+ + ++ L + LHG Q +R+E F ++ L AT
Sbjct: 313 KKKSIVFFSSCKEVQYLYRVFCRLRPGVSLLALHGRQQQMRRMEVYNEFVRKRAAVLFAT 372
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND-RSLLKAIA 359
D+AARGLD V V+ + CP D +Y+HR GRTAR +G A+ + ++ + +++ +
Sbjct: 373 DIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEKGMVQQLL 432
Query: 360 KRAGSKLKSRIVAEQSITKWSKI 382
++ + +I E+ I K+
Sbjct: 433 QKKVPVKEIKINPEKLIDVQKKL 455
>UNIPROTKB|F1MSX0 [details] [associations]
symbol:F1MSX0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:DAAA02009745
IPI:IPI00903923 Ensembl:ENSBTAT00000039166 Uniprot:F1MSX0
Length = 674
Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 132/410 (32%), Positives = 211/410 (51%)
Query: 10 LRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP- 68
L+A + +G++ T IQ I L GRD+ +A TGSGKT AF +P +E L+ + K +P
Sbjct: 195 LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVE-LIVKLKFMPR 253
Query: 69 -AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATP 127
VLIL+PTRELA+Q +++++ L++GG + + L + +IVVATP
Sbjct: 254 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGINIVVATP 313
Query: 128 GRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 187
GR++DH++N+ R+L++GF E+ ++++L P RRQTMLFSAT T
Sbjct: 314 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTR 373
Query: 188 DVDELIKLSLTK-PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKV 246
V++L ++SL K PL + D K +T+ + +L + K K+
Sbjct: 374 KVEDLARISLKKEPLYVGVDDD-KANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKL 432
Query: 247 IIF-SGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAAR 305
++F S K + ++L L +HG Q +R F L+ TDVAAR
Sbjct: 433 MVFFSSCKSVKYHYELL-NYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAAR 491
Query: 306 GLDIIGVQTVINYACPRDLTSYVHRVGRTARA--GREGYAVTFVTDNDRSLLKAIAKRAG 363
GLDI V ++ Y P D Y+HRVGRTAR GR G+A+ + + L+ + +
Sbjct: 492 GLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELGFLRYLKQ--- 547
Query: 364 SKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKA 413
S++ + WSKI + ++ Q+ +++ L K+ EA K+
Sbjct: 548 ----SKVPLSEFEFSWSKISD-IQSQLEKLIEKNY---FLHKSAQEAYKS 589
>UNIPROTKB|F1N533 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:DAAA02005160 IPI:IPI00904747
Ensembl:ENSBTAT00000045489 OMA:TENKGES Uniprot:F1N533
Length = 670
Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 132/410 (32%), Positives = 211/410 (51%)
Query: 10 LRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP- 68
L+A + +G++ T IQ I L GRD+ +A TGSGKT AF +P +E L+ + K +P
Sbjct: 191 LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVE-LIVKLKFMPR 249
Query: 69 -AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATP 127
VLIL+PTRELA+Q +++++ L++GG + + L + +IVVATP
Sbjct: 250 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGINIVVATP 309
Query: 128 GRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 187
GR++DH++N+ R+L++GF E+ ++++L P RRQTMLFSAT T
Sbjct: 310 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTR 369
Query: 188 DVDELIKLSLTK-PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKV 246
V++L ++SL K PL + D K +T+ + +L + K K+
Sbjct: 370 KVEDLARISLKKEPLYVGVDDD-KANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKL 428
Query: 247 IIF-SGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAAR 305
++F S K + ++L L +HG Q +R F L+ TDVAAR
Sbjct: 429 MVFFSSCKSVKYHYELL-NYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAAR 487
Query: 306 GLDIIGVQTVINYACPRDLTSYVHRVGRTARA--GREGYAVTFVTDNDRSLLKAIAKRAG 363
GLDI V ++ Y P D Y+HRVGRTAR GR G+A+ + + L+ + +
Sbjct: 488 GLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELGFLRYLKQ--- 543
Query: 364 SKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKA 413
S++ + WSKI + ++ Q+ +++ L K+ EA K+
Sbjct: 544 ----SKVPLSEFEFSWSKISD-IQSQLEKLIEKNY---FLHKSAQEAYKS 585
>UNIPROTKB|F1RY13 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000017112 Uniprot:F1RY13
Length = 671
Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 132/410 (32%), Positives = 211/410 (51%)
Query: 10 LRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP- 68
LRA + +G++ T IQ I L GRD+ +A TGSGKT AF +P +E L+ + + +P
Sbjct: 192 LRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVE-LIVKLRFMPR 250
Query: 69 -AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATP 127
VLIL+PTRELA+Q +++++ L++GG + + L + +IVVATP
Sbjct: 251 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGINIVVATP 310
Query: 128 GRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 187
GR++DH++N+ R+L++GF E+ ++++L P RRQTMLFSAT T
Sbjct: 311 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTR 370
Query: 188 DVDELIKLSLTK-PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKV 246
V++L ++SL K PL + D K +T+ + +L + K K+
Sbjct: 371 KVEDLARISLKKEPLYVGVDDD-KANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKL 429
Query: 247 IIF-SGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAAR 305
++F S K + ++L L +HG Q +R F L+ TDVAAR
Sbjct: 430 MVFFSSCKSVKYHYELL-NYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAAR 488
Query: 306 GLDIIGVQTVINYACPRDLTSYVHRVGRTARA--GREGYAVTFVTDNDRSLLKAIAKRAG 363
GLDI V ++ Y P D Y+HRVGRTAR GR G+A+ + + L+ + +
Sbjct: 489 GLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELGFLRYLKQ--- 544
Query: 364 SKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKA 413
S++ + WSKI + ++ Q+ +++ L K+ EA K+
Sbjct: 545 ----SKVPLSEFEFSWSKISD-IQSQLEKLIEKNY---FLHKSAQEAYKS 586
>UNIPROTKB|I3L840 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025310 Uniprot:I3L840
Length = 667
Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 132/410 (32%), Positives = 211/410 (51%)
Query: 10 LRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP- 68
LRA + +G++ T IQ I L GRD+ +A TGSGKT AF +P +E L+ + + +P
Sbjct: 188 LRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVE-LIVKLRFMPR 246
Query: 69 -AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATP 127
VLIL+PTRELA+Q +++++ L++GG + + L + +IVVATP
Sbjct: 247 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGINIVVATP 306
Query: 128 GRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 187
GR++DH++N+ R+L++GF E+ ++++L P RRQTMLFSAT T
Sbjct: 307 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTR 366
Query: 188 DVDELIKLSLTK-PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKV 246
V++L ++SL K PL + D K +T+ + +L + K K+
Sbjct: 367 KVEDLARISLKKEPLYVGVDDD-KANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKL 425
Query: 247 IIF-SGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAAR 305
++F S K + ++L L +HG Q +R F L+ TDVAAR
Sbjct: 426 MVFFSSCKSVKYHYELL-NYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAAR 484
Query: 306 GLDIIGVQTVINYACPRDLTSYVHRVGRTARA--GREGYAVTFVTDNDRSLLKAIAKRAG 363
GLDI V ++ Y P D Y+HRVGRTAR GR G+A+ + + L+ + +
Sbjct: 485 GLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELGFLRYLKQ--- 540
Query: 364 SKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKA 413
S++ + WSKI + ++ Q+ +++ L K+ EA K+
Sbjct: 541 ----SKVPLSEFEFSWSKISD-IQSQLEKLIEKNY---FLHKSAQEAYKS 582
>SGD|S000002189 [details] [associations]
symbol:DBP10 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0030687 "preribosome, large subunit precursor"
evidence=IGI;IPI] [GO:0000463 "maturation of LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000002189
GO:GO:0005524 GO:GO:0005730 EMBL:BK006938 GO:GO:0003723
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:Z71781 GO:GO:0000463 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:HLKVEMN OrthoDB:EOG4JWZP1 EMBL:Z74079 PIR:S67564
RefSeq:NP_010253.2 ProteinModelPortal:Q12389 SMR:Q12389
DIP:DIP-6387N IntAct:Q12389 MINT:MINT-613064 STRING:Q12389
PaxDb:Q12389 PeptideAtlas:Q12389 EnsemblFungi:YDL031W GeneID:851530
KEGG:sce:YDL031W CYGD:YDL031w GeneTree:ENSGT00550000075100
NextBio:968920 Genevestigator:Q12389 GermOnline:YDL031W
GO:GO:0000466 Uniprot:Q12389
Length = 995
Score = 370 (135.3 bits), Expect = 3.0e-46, Sum P(2) = 3.0e-46
Identities = 82/206 (39%), Positives = 121/206 (58%)
Query: 5 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP 64
LS+ +L + G+ +PTPIQ IPL L RDI G A TGSGKTAAF LP +E+L
Sbjct: 144 LSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEKLKSHS 203
Query: 65 KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVV 124
+I A R +IL+P+RELA+Q ++ + A+ T++R L+ GG S + Q + + PD+++
Sbjct: 204 GKIGA-RAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEEQFGMMMTNPDVII 262
Query: 125 ATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSAT 184
ATPGR + HL+ M+ RL E+GF +++EL+ P RQT+LFSAT
Sbjct: 263 ATPGRFL-HLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLASLPTTRQTLLFSAT 321
Query: 185 LTEDVDELIKLSLTKPLRLSADPSAK 210
L + + +K L P+ + D K
Sbjct: 322 LPNSLVDFVKAGLVNPVLVRLDAETK 347
Score = 180 (68.4 bits), Expect = 3.0e-46, Sum P(2) = 3.0e-46
Identities = 44/120 (36%), Positives = 61/120 (50%)
Query: 247 IIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 306
I+F T+ + L + ++G L Q R L FR L+ TDVAARG
Sbjct: 436 ILFVPTRHHVEYISQLLRDCGYLISYIYGTLDQHARKRQLYNFRAGLTSILVVTDVAARG 495
Query: 307 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 366
+DI + VINY P +VHRVGRTARAG +G+A + V +N+ L + G K+
Sbjct: 496 VDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENELPYLLDLELFLGKKI 555
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 482 (174.7 bits), Expect = 3.1e-46, Sum P(2) = 3.1e-46
Identities = 114/336 (33%), Positives = 177/336 (52%)
Query: 18 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIR--VLIL 75
Y++PTPIQ +P+AL+GRD+ G A TGSGKTAAF P L ++ + + P +I+
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 332
Query: 76 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR 135
PTREL Q+H+ ++ + ++R V GG S Q AL+ +IVV TPGR+IDH++
Sbjct: 333 CPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVK 392
Query: 136 NSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 195
+ R+ ++GF ++ + RQT+LFSAT + +++L +
Sbjct: 393 KK-ATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451
Query: 196 SLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQA 255
L P+R+ + +T + L T + V++F K
Sbjct: 452 ILIDPIRVVQGDIGEANEDVTQIVEILHSGPS-KWNWLTRRLVEFTSSGSVLLFVTKKAN 510
Query: 256 AHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 315
A L LHG++ Q++R + + F+K+ + L+ATDVAARGLDI ++TV
Sbjct: 511 AEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTV 570
Query: 316 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
INY RD+ ++ HR+GRT RAG +G A T +T D
Sbjct: 571 INYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
Score = 37 (18.1 bits), Expect = 3.1e-46, Sum P(2) = 3.1e-46
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 563 AKEMRELFHSDMSEKKQKRTGGIGKK 588
+KE+ +L + +K + GG GKK
Sbjct: 625 SKELLDLAMQNAWFRKSRFKGGKGKK 650
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 481 (174.4 bits), Expect = 3.3e-46, Sum P(2) = 3.3e-46
Identities = 114/336 (33%), Positives = 177/336 (52%)
Query: 18 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIR--VLIL 75
Y++PTPIQ +P+AL+GRD+ G A TGSGKTAAF P L ++ + + P +I+
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 332
Query: 76 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR 135
PTREL Q+H+ ++ + ++R V GG S Q AL+ +IVV TPGR+IDH++
Sbjct: 333 CPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVK 392
Query: 136 NSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 195
+ R+ ++GF ++ + RQT+LFSAT + +++L +
Sbjct: 393 KK-ATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451
Query: 196 SLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQA 255
L P+R+ + +T + L T + V++F K
Sbjct: 452 ILIDPIRVVQGDIGEANEDVTQIVEILHSGPS-KWNWLTRRLVEFTSSGSVLLFVTKKAN 510
Query: 256 AHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 315
A L LHG++ Q++R + + F+K+ + L+ATDVAARGLDI ++TV
Sbjct: 511 AEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTV 570
Query: 316 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
INY RD+ ++ HR+GRT RAG +G A T +T D
Sbjct: 571 INYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
Score = 38 (18.4 bits), Expect = 3.3e-46, Sum P(2) = 3.3e-46
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 547 SNGKKSKHSSQESNSR 562
SNGK+ +++ +SR
Sbjct: 803 SNGKRERYTENRGSSR 818
Score = 37 (18.1 bits), Expect = 4.3e-46, Sum P(2) = 4.3e-46
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 563 AKEMRELFHSDMSEKKQKRTGGIGKK 588
+KE+ +L + +K + GG GKK
Sbjct: 625 SKELLDLAMQNAWFRKSRFKGGKGKK 650
>UNIPROTKB|I3L7B7 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025125 Uniprot:I3L7B7
Length = 696
Score = 485 (175.8 bits), Expect = 3.4e-46, P = 3.4e-46
Identities = 132/410 (32%), Positives = 211/410 (51%)
Query: 10 LRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP- 68
LRA + +G++ T IQ I L GRD+ +A TGSGKT AF +P +E L+ + + +P
Sbjct: 217 LRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVE-LIVKLRFMPR 275
Query: 69 -AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATP 127
VLIL+PTRELA+Q +++++ L++GG + + L + +IVVATP
Sbjct: 276 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGINIVVATP 335
Query: 128 GRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 187
GR++DH++N+ R+L++GF E+ ++++L P RRQTMLFSAT T
Sbjct: 336 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTR 395
Query: 188 DVDELIKLSLTK-PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKV 246
V++L ++SL K PL + D K +T+ + +L + K K+
Sbjct: 396 KVEDLARISLKKEPLYVGVDDD-KANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKL 454
Query: 247 IIF-SGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAAR 305
++F S K + ++L L +HG Q +R F L+ TDVAAR
Sbjct: 455 MVFFSSCKSVKYHYELL-NYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAAR 513
Query: 306 GLDIIGVQTVINYACPRDLTSYVHRVGRTARA--GREGYAVTFVTDNDRSLLKAIAKRAG 363
GLDI V ++ Y P D Y+HRVGRTAR GR G+A+ + + L+ + +
Sbjct: 514 GLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELGFLRYLKQ--- 569
Query: 364 SKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKA 413
S++ + WSKI + ++ Q+ +++ L K+ EA K+
Sbjct: 570 ----SKVPLSEFEFSWSKISD-IQSQLEKLIEKNY---FLHKSAQEAYKS 611
>CGD|CAL0004182 [details] [associations]
symbol:HCA4 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004182 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 EMBL:AACQ01000023 EMBL:AACQ01000025
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_720233.1 RefSeq:XP_720463.1 ProteinModelPortal:Q5AF95
STRING:Q5AF95 GeneID:3637911 GeneID:3638091 KEGG:cal:CaO19.10227
KEGG:cal:CaO19.2712 KO:K14776 InterPro:IPR025313 Pfam:PF13959
Uniprot:Q5AF95
Length = 765
Score = 489 (177.2 bits), Expect = 3.4e-46, P = 3.4e-46
Identities = 120/363 (33%), Positives = 187/363 (51%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L+ + + T IQ IP+AL G D+ G+A TGSGKT AF +P +E L+
Sbjct: 52 DLPITENTLKGLKEATFVSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIPVIESLI 111
Query: 62 YRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
R K + LI++PTRELAVQ+ ++ KI ++ LV GG + ++ + M
Sbjct: 112 -RNKITEYDGLAALIVSPTRELAVQIFEVLTKIGKYNTFSAGLVTGGKDVQFEKERVSRM 170
Query: 120 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTM 179
+I+V TPGR+ HL ++ R L++GF +I ++ P RQT+
Sbjct: 171 -NILVGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPTTRQTL 229
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCS 239
LFSAT +E V++L +LSLT P ++ + +T + VL S
Sbjct: 230 LFSATQSESVNDLARLSLTNPNKIGVSSDQEVSATPESLEQYYVKVPLDEKLDVLWSFIK 289
Query: 240 KTFTSKVIIF-SGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRK-QHVDF 296
SK+++F S +KQ + + L + +L+G Q RLE F + QH
Sbjct: 290 SHLKSKILVFFSSSKQVQYTYETFRTLQPGISLMKLYGRHKQTSRLETTMKFSQAQHA-C 348
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS-LL 355
L ATD+ ARGLD + V+ CP D +YVHRVGR+AR GR+G ++ + ++ +L
Sbjct: 349 LFATDIVARGLDFPAIDWVVQVDCPEDAATYVHRVGRSARFGRKGKSLLMLLPSEEEGML 408
Query: 356 KAI 358
K +
Sbjct: 409 KRL 411
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 480 (174.0 bits), Expect = 3.6e-46, Sum P(2) = 3.6e-46
Identities = 114/336 (33%), Positives = 177/336 (52%)
Query: 18 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIR--VLIL 75
Y++PTPIQ +P+A++GRD+ G A TGSGKTAAF P L ++ + + P +I+
Sbjct: 275 YTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 334
Query: 76 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR 135
PTREL Q+HS ++ + ++R V GG S Q AL+ +IVV TPGR+IDH++
Sbjct: 335 CPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVK 394
Query: 136 NSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 195
+ R+ ++GF ++ + RQT+LFSAT + +++L +
Sbjct: 395 KK-ATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 453
Query: 196 SLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQA 255
L P+R+ + +T + L T + V++F K
Sbjct: 454 ILIDPIRVVQGDIGEANEDVTQIVEIFPSGPS-KWNWLTRRLVEFTSSGSVLLFVTKKAN 512
Query: 256 AHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 315
A L LHG++ Q++R + + F+K+ + L+ATDVAARGLDI ++TV
Sbjct: 513 AEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTV 572
Query: 316 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
INY RD+ ++ HR+GRT RAG +G A T +T D
Sbjct: 573 INYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 608
Score = 39 (18.8 bits), Expect = 3.6e-46, Sum P(2) = 3.6e-46
Identities = 18/63 (28%), Positives = 20/63 (31%)
Query: 510 GKDKKEKAGISMVDLAYRRXXXXXXXXXXLDAGKIVKSNGKKSKHSSQESNSRAKEMREL 569
GK KK G L YR V SN + K SS R M+
Sbjct: 648 GKGKKLNIGGG--GLGYRERPGLGSESSDRGNNNSVMSNYEAYKPSSGAMGDRLTAMKAA 705
Query: 570 FHS 572
F S
Sbjct: 706 FQS 708
>POMBASE|SPAC1093.05 [details] [associations]
symbol:SPAC1093.05 "ATP-dependent RNA helicase Hca4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1093.05 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 PIR:T50068 RefSeq:NP_594652.1
ProteinModelPortal:Q9UTP9 SMR:Q9UTP9 STRING:Q9UTP9
EnsemblFungi:SPAC1093.05.1 GeneID:2541630 KEGG:spo:SPAC1093.05
NextBio:20802723 Uniprot:Q9UTP9
Length = 735
Score = 487 (176.5 bits), Expect = 4.1e-46, P = 4.1e-46
Identities = 124/367 (33%), Positives = 183/367 (49%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L++P A + + T IQ CIP AL GRDI G+A TGSGKT AF +P +E L
Sbjct: 43 ELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENL- 101
Query: 62 YRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
YR K + + L+++PTRELA+Q + KI + L++GG + K ++ L M
Sbjct: 102 YRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSRM 161
Query: 120 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTM 179
+I+V TPGR++ H+ +++ R+L++GF + +V P RQTM
Sbjct: 162 -NILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTM 220
Query: 180 LFSATLTEDVDELIKLSLTKP--LRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 237
LFSAT T+ V +L +LSL P + + + ++ PS L + +L
Sbjct: 221 LFSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLD---ILFGF 277
Query: 238 CSKTFTSKVIIF-SGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRK-QHV 294
K I+F S KQ + + + LHG Q R E F +HV
Sbjct: 278 IRTHLKFKTIVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHV 337
Query: 295 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 354
L TD+ ARGLD V VI P D+ +Y+HRVGRTAR R G A+ + ++ +
Sbjct: 338 -VLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNALLLLLPSEEAF 396
Query: 355 LKAIAKR 361
LK + +
Sbjct: 397 LKRLESK 403
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 481 (174.4 bits), Expect = 4.1e-46, Sum P(2) = 4.1e-46
Identities = 114/336 (33%), Positives = 177/336 (52%)
Query: 18 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIR--VLIL 75
Y++PTPIQ +P+AL+GRD+ G A TGSGKTAAF P L ++ + + P +I+
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 332
Query: 76 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR 135
PTREL Q+H+ ++ + ++R V GG S Q AL+ +IVV TPGR+IDH++
Sbjct: 333 CPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVK 392
Query: 136 NSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 195
+ R+ ++GF ++ + RQT+LFSAT + +++L +
Sbjct: 393 KK-ATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451
Query: 196 SLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQA 255
L P+R+ + +T + L T + V++F K
Sbjct: 452 ILIDPIRVVQGDIGEANEDVTQIVEILHSGPS-KWNWLTRRLVEFTSSGSVLLFVTKKAN 510
Query: 256 AHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 315
A L LHG++ Q++R + + F+K+ + L+ATDVAARGLDI ++TV
Sbjct: 511 AEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTV 570
Query: 316 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
INY RD+ ++ HR+GRT RAG +G A T +T D
Sbjct: 571 INYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
Score = 37 (18.1 bits), Expect = 4.1e-46, Sum P(2) = 4.1e-46
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 563 AKEMRELFHSDMSEKKQKRTGGIGKK 588
+KE+ +L + +K + GG GKK
Sbjct: 625 SKELLDLAMQNAWFRKSRFKGGKGKK 650
>MGI|MGI:1924841 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1924841 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP ChiTaRS:DDX10 EMBL:BC049261
IPI:IPI00896604 RefSeq:NP_084212.2 UniGene:Mm.133560
ProteinModelPortal:Q80Y44 SMR:Q80Y44 STRING:Q80Y44
PhosphoSite:Q80Y44 PaxDb:Q80Y44 PRIDE:Q80Y44
Ensembl:ENSMUST00000065630 GeneID:77591 KEGG:mmu:77591
UCSC:uc009plz.2 InParanoid:Q80Y44 NextBio:347162 Bgee:Q80Y44
CleanEx:MM_DDX10 Genevestigator:Q80Y44
GermOnline:ENSMUSG00000053289 Uniprot:Q80Y44
Length = 875
Score = 491 (177.9 bits), Expect = 4.3e-46, P = 4.3e-46
Identities = 121/383 (31%), Positives = 197/383 (51%)
Query: 5 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP 64
LS+ L+ + Y T IQ I LAL G+D+ G+A TGSGKT AF +P LE L YR
Sbjct: 76 LSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEAL-YRL 134
Query: 65 K--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+ + VLI++PTRELA Q ++ K+ + D L++GG K + + ++ +I
Sbjct: 135 QWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNI-NI 193
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+V TPGR++ H+ ++ R+L++GF+ ++ ++ PK+RQT+LFS
Sbjct: 194 LVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTLLFS 253
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTF 242
AT T+ V +L +LSL P + AK ST + +VL S
Sbjct: 254 ATQTKSVKDLARLSLKDPEYVWVHEKAKY-STPATLEQNYIICELHQKISVLFSFLRSHL 312
Query: 243 TSK-VIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K ++ FS K+ + ++ L + LHG Q +R+E F ++ L AT
Sbjct: 313 KKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRAAVLFAT 372
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND-RSLLKAIA 359
D+AARGLD V V+ + CP D +Y+HR GRTAR +G A+ + ++ + +++ +
Sbjct: 373 DIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQGMVQQLL 432
Query: 360 KRAGSKLKSRIVAEQSITKWSKI 382
++ + +I E+ I K+
Sbjct: 433 QKKVPVKEIKINPEKLIDVQKKL 455
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 481 (174.4 bits), Expect = 4.3e-46, Sum P(2) = 4.3e-46
Identities = 114/336 (33%), Positives = 177/336 (52%)
Query: 18 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIR--VLIL 75
Y++PTPIQ +P+AL+GRD+ G A TGSGKTAAF P L ++ + + P +I+
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 332
Query: 76 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR 135
PTREL Q+H+ ++ + ++R V GG S Q AL+ +IVV TPGR+IDH++
Sbjct: 333 CPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVK 392
Query: 136 NSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 195
+ R+ ++GF ++ + RQT+LFSAT + +++L +
Sbjct: 393 KK-ATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451
Query: 196 SLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQA 255
L P+R+ + +T + L T + V++F K
Sbjct: 452 ILIDPIRVVQGDIGEANEDVTQIVEILHSGPS-KWNWLTRRLVEFTSSGSVLLFVTKKAN 510
Query: 256 AHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 315
A L LHG++ Q++R + + F+K+ + L+ATDVAARGLDI ++TV
Sbjct: 511 AEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTV 570
Query: 316 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
INY RD+ ++ HR+GRT RAG +G A T +T D
Sbjct: 571 INYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
Score = 37 (18.1 bits), Expect = 4.3e-46, Sum P(2) = 4.3e-46
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 563 AKEMRELFHSDMSEKKQKRTGGIGKK 588
+KE+ +L + +K + GG GKK
Sbjct: 625 SKELLDLAMQNAWFRKSRFKGGKGKK 650
>UNIPROTKB|Q3SZ40 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 HSSP:P60842 EMBL:BC103169
IPI:IPI00695179 RefSeq:NP_001029501.1 UniGene:Bt.48952
ProteinModelPortal:Q3SZ40 STRING:Q3SZ40 PRIDE:Q3SZ40
Ensembl:ENSBTAT00000014014 GeneID:508728 KEGG:bta:508728 CTD:54606
HOVERGEN:HBG051334 InParanoid:Q3SZ40 OrthoDB:EOG47H5PT
NextBio:20868656 Uniprot:Q3SZ40
Length = 546
Score = 388 (141.6 bits), Expect = 4.7e-46, Sum P(2) = 4.7e-46
Identities = 104/316 (32%), Positives = 152/316 (48%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+ L LL+A LG+S+PT IQ IPLAL G+D+ A TGSGKTAA+A+P L+ LL+
Sbjct: 12 MGLDHRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLH 71
Query: 63 RPKRIP----AIRVLILTPTRELAVQVHSMIEKIAQFT--DIRCCLVVGGLSTKMQETAL 116
R P A+R L+L PT+ELA Q SMI+++A + DIR V + Q L
Sbjct: 72 RKATGPVVEQAVRALVLVPTKELARQAQSMIQQLAAYCARDIRVANVSAAEDSASQRAVL 131
Query: 117 RSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRR 176
PD+VV TP R+++HL+ L GF E+ L+ P+
Sbjct: 132 MEKPDVVVGTPSRILNHLQQDNLKLRDSMELLVVDEADLLFSFGFEEELKSLLCHLPRIY 191
Query: 177 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS 236
Q L SAT EDV L +L L P+ L S + P ++ +L +
Sbjct: 192 QAFLMSATFNEDVQALKELVLHNPVTLKLQES-QLPGPDQLQQFQVVCETEEDKFLLLYA 250
Query: 237 LCSKTFT-SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
L + K ++F T + ++RL++ ++ A L+G L R + F + D
Sbjct: 251 LLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGFYD 310
Query: 296 FLIATDVAARGLDIIG 311
+IATD G + G
Sbjct: 311 CVIATDAEVLGPPVKG 326
Score = 112 (44.5 bits), Expect = 4.7e-46, Sum P(2) = 4.7e-46
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 304 ARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ARG+D V V+N+ P +Y+HR GRTARA G +TFV ++S L I
Sbjct: 346 ARGIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSQLGKI 400
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 492 (178.3 bits), Expect = 5.2e-46, P = 5.2e-46
Identities = 120/350 (34%), Positives = 185/350 (52%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP--KR 66
LL+A PTPIQ IP+AL+GRD+ A TGSGKTA F P++ ++ +P ++
Sbjct: 316 LLQAIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIMDQPYLEK 375
Query: 67 IPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVAT 126
L L PTRELA Q++ K +++ ++ ++ GG+S + Q L++ +I+VAT
Sbjct: 376 GDGPIALFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCEIIVAT 435
Query: 127 PGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 186
PGR+ID ++ + ++ + GF ++ +V RQT+LFSAT
Sbjct: 436 PGRLIDMIKLK-ATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQTLLFSATFK 494
Query: 187 EDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXX-----XNQEAVLLSLCSKT 241
+V+E + L+ P+++S S +T NQ A+LLS S
Sbjct: 495 PNVEEFARTILSDPIKISIGMIGSANSDITQIVQVLKSDSDKWNWLTNQLALLLSQGS-- 552
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
V+IF TK A +L + LHG+ Q +R + ++ F++ ++ LIATD
Sbjct: 553 ----VLIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGKINILIATD 608
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
VAARGLDI ++ V+NY RD+ S+ HR+GRT RAG G A T +T D
Sbjct: 609 VAARGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKD 658
>DICTYBASE|DDB_G0281925 [details] [associations]
symbol:DDB_G0281925 "DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
Uniprot:Q54T87
Length = 586
Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 130/363 (35%), Positives = 182/363 (50%)
Query: 17 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIR----V 72
G++ PT IQ P+ L G D+ G A TGSGKT AF LP L +++ PKR P+ V
Sbjct: 129 GFTAPTVIQGQSWPIILGGNDLVGLAATGSGKTLAFLLPALLKIISLPKR-PSYGATPLV 187
Query: 73 LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMID 132
L++ PTRELA Q+ + + + T IR GGL Q LR+ DIV+ TPGR+ D
Sbjct: 188 LVMAPTRELAQQIEEVCKTSIRGTSIRQLCAYGGLGKIDQSRILRNGVDIVIGTPGRLND 247
Query: 133 HLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDEL 192
LR R+L++GF +I L+ PK RQT++FSAT ++V L
Sbjct: 248 LLRKH---HLSSVQYLVLDEADRMLDMGFMPQIESLIDQIPKERQTLMFSATWPKEVKLL 304
Query: 193 IKLSLTKPLRLSADPSAKRPS-TLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSK----VI 247
L P++++ S +T + ++ +K T+ VI
Sbjct: 305 ASKFLKDPIKITVGSQELTGSINVTQHIVNIDDLSDLQSDDLIYDEINKILTADPTNTVI 364
Query: 248 IFSGTKQAAHRLK-ILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 306
+F K + L +K+ LH Q R L+LFR + LIATDVAARG
Sbjct: 365 VFCNEKYKCDDFQHYLSTQKNVKSIVLHSGKDQRMRESGLKLFRDHRIRILIATDVAARG 424
Query: 307 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD---NDRSLLKAIAKRAG 363
LDI V+ V NY P ++ YVHR+GRT RAG+ G A ++VT N R L+K I +R
Sbjct: 425 LDIPSVKAVFNYRLPGNIEDYVHRIGRTGRAGKTGDAWSYVTTQTPNLRDLVK-ILQRTN 483
Query: 364 SKL 366
K+
Sbjct: 484 QKI 486
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 491 (177.9 bits), Expect = 7.2e-46, P = 7.2e-46
Identities = 128/391 (32%), Positives = 188/391 (48%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ LS + +LGY KPT IQA IP +GRD+ G A TGSGKT AF LP +
Sbjct: 422 QCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIK 481
Query: 62 -YRPKRIPAIRV-LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
RP + + +I+TPTRELAVQ+ + + +IR C GG K Q L+
Sbjct: 482 DQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRG 541
Query: 120 PDIVVATPGRMIDHLRNSMSXXXXXX--XXXXXXXXXRLLELGFSAEIHELVRLCPKRRQ 177
+IVV TPGRMID L + R+ +LGF ++ ++ RQ
Sbjct: 542 AEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQ 601
Query: 178 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS- 236
T+LFSAT ++ L + L KP+ ++ + S + ++ LL
Sbjct: 602 TVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPEESKFSRLLELLGE 661
Query: 237 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 296
L + + ++F +++A L + +HG Q R + ++ D
Sbjct: 662 LYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDV 721
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 356
LIAT V ARGLD+ +Q V+NY CP + YVHRVGRT RAG G AVTF+T
Sbjct: 722 LIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAV 781
Query: 357 AIAKRAGSKLKSRIVAEQSITKWSKIIEQME 387
IAK K+ + V ++ T S+ +E+++
Sbjct: 782 DIAKAL--KMSKQPVPKELQTLASQFLEKVK 810
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 478 (173.3 bits), Expect = 7.3e-46, Sum P(2) = 7.3e-46
Identities = 114/336 (33%), Positives = 177/336 (52%)
Query: 18 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIR--VLIL 75
Y++PTPIQ +P+AL+GRD+ G A TGSGKTAAF P L ++ + + P +I+
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 332
Query: 76 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR 135
PTREL Q+H+ ++ + ++R V GG S Q AL+ +IVV TPGR+IDH++
Sbjct: 333 CPTRELCQQIHAEGKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVK 392
Query: 136 NSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 195
+ R+ ++GF ++ + RQT+LFSAT + +++L +
Sbjct: 393 KK-ATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451
Query: 196 SLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQA 255
L P+R+ + +T + L T + V++F K
Sbjct: 452 ILIDPIRVVQGDIGEANEDVTQIVEILHSGPS-KWNWLTRRLVEFTSSGSVLLFVTKKAN 510
Query: 256 AHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 315
A L LHG++ Q++R + + F+K+ + L+ATDVAARGLDI ++TV
Sbjct: 511 AEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTV 570
Query: 316 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
INY RD+ ++ HR+GRT RAG +G A T +T D
Sbjct: 571 INYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
Score = 38 (18.4 bits), Expect = 7.3e-46, Sum P(2) = 7.3e-46
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 547 SNGKKSKHSSQESNSR 562
SNGK+ +++ +SR
Sbjct: 803 SNGKRERYTENRGSSR 818
Score = 37 (18.1 bits), Expect = 9.3e-46, Sum P(2) = 9.3e-46
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 563 AKEMRELFHSDMSEKKQKRTGGIGKK 588
+KE+ +L + +K + GG GKK
Sbjct: 625 SKELLDLAMQNAWFRKSRFKGGKGKK 650
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
Identities = 116/347 (33%), Positives = 186/347 (53%)
Query: 18 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 77
+ KPTPIQ+ P L+G+D+ G A TGSGKT AF +P + ++ + VL ++P
Sbjct: 173 FDKPTPIQSVSWPFLLSGKDVIGVAETGSGKTFAFGVPAINNII-TTGNTKTLSVLCISP 231
Query: 78 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS 137
TRELA+Q++ + ++ + + C V GG+S Q +++ ++VVATPGR++D L N
Sbjct: 232 TRELALQIYDNLIELTADSGVNCVAVYGGVSKDDQIRKIKTA-NVVVATPGRLVD-LIND 289
Query: 138 MSXXXXXXXXXXXXXXXRLLELGFSAEIHELV-RLCPKRRQTMLFSATLTEDVDELIKLS 196
+ R+LE GF +I ++ RQT++F+AT ++V EL
Sbjct: 290 GAINLGKVNYLVLDEADRMLEKGFEEDIKTIISNTSNSERQTLMFTATWPKEVRELANNF 349
Query: 197 LTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSK-----TFTSKVIIFSG 251
+ P++++ + S ++E L+ L K + +K++IF+
Sbjct: 350 MNSPVKVTVGDRDEL-SANKRITQVVEVINKFDKEKKLIQLLRKYNANESSDNKILIFAL 408
Query: 252 TKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG 311
K+ A R++ A +HG+L+Q QR AL F+ + L+ATDVAARGLDI
Sbjct: 409 YKKEASRIENFLKRNRFSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPN 468
Query: 312 VQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
V+ VIN P + YVHR+GRT RAG +G A T T++++ L A+
Sbjct: 469 VKVVINLTFPLTIEDYVHRIGRTGRAGAKGTAHTLFTEDEKHLSGAL 515
>CGD|CAL0004058 [details] [associations]
symbol:DBP8 species:5476 "Candida albicans" [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004058 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AACQ01000165 EMBL:AACQ01000186
RefSeq:XP_711718.1 RefSeq:XP_712192.1 ProteinModelPortal:Q59PR3
STRING:Q59PR3 GeneID:3646191 GeneID:3646692 KEGG:cal:CaO19.13973
KEGG:cal:CaO19.6652 KO:K14778 Uniprot:Q59PR3
Length = 440
Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
Identities = 133/379 (35%), Positives = 193/379 (50%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L +++ L + +A+ PT IQ+ACIP L G D G A TGSGKT AFA P L +
Sbjct: 5 DLGVAKWLSESLDAMKIYTPTAIQSACIPAILKGHDCIGGAKTGSGKTIAFAAPMLTQWS 64
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P I LILTPTRELA+Q+ + +I+ +VVGG Q AL+ P
Sbjct: 65 EDPFGIFG---LILTPTRELALQIAEQFAALGANMNIKVAVVVGGEDFVQQTLALQRKPH 121
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXX---XXRLLELGFSAEIHELVRLCPK--RR 176
V+ATPGR+ DH+ NS RLL F +++ + P +R
Sbjct: 122 FVIATPGRLADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQRCFDVLPTSDKR 181
Query: 177 QTMLFSATLTEDVDELIKLSLTK---PLRLSADPSAKR---PSTLTXXXXXXXXXXXXNQ 230
QT+LF+AT+T+ V L + T P+ + + + PSTL +
Sbjct: 182 QTLLFTATITDAVRALKEKPPTPGKPPVFMHEVETVDKVAIPSTLQISYVFVPSYV---K 238
Query: 231 EAVLLSLCS-KTFT-SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALEL 288
EA L S+ + F S +IF A L+ + + A LH + Q++R +L
Sbjct: 239 EAYLNSILHLEQFKDSTAVIFVNRTTTAEVLRRMLRKLDFRVASLHSEMPQSERTNSLHR 298
Query: 289 FRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 348
F+ LIATDVA+RGLDI V+ VIN+ P D ++HRVGRTARAGR+G AV+ +
Sbjct: 299 FKAGAARILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKGDAVSIIG 358
Query: 349 DNDRSLLKAIAKRAGSKLK 367
+ D +++I +R K++
Sbjct: 359 EKDIDRIQSIEERINKKME 377
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
Identities = 128/372 (34%), Positives = 181/372 (48%)
Query: 5 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYR- 63
L L+ + ++KPTP+Q IP+ GRD+ A TGSGKT F P L
Sbjct: 161 LDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSG 220
Query: 64 PKRIPAIR-----------VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGG--LSTK 110
P +P L+L PTRELA Q+ K + +R C+V GG + +
Sbjct: 221 PSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQ 280
Query: 111 MQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVR 170
M+E R D++VATPGR+ D L R+L++GF +I +V
Sbjct: 281 MREVD-RGC-DLLVATPGRLNDLLERG-KVSLANIKYLVLDEADRMLDMGFEPQIRHIVE 337
Query: 171 LC--P--KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXX 226
C P + RQT++FSAT D+ L + L + LS + ST
Sbjct: 338 ECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSV---GRVGSTSENITQRILYVD 394
Query: 227 XXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEAL 286
++++ LL L S +IF TK+ A +L + KA +HG+ TQA+R AL
Sbjct: 395 DMDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERAL 454
Query: 287 ELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 346
F+ D L+AT VAARGLDI V VINY P D+ YVHR+GRT RAG G A +F
Sbjct: 455 SAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSF 514
Query: 347 VTDNDRSLLKAI 358
N+++++K +
Sbjct: 515 FNSNNQNIVKGL 526
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 478 (173.3 bits), Expect = 8.5e-46, Sum P(2) = 8.5e-46
Identities = 114/336 (33%), Positives = 177/336 (52%)
Query: 18 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIR--VLIL 75
Y++PTPIQ +P+AL+GRD+ G A TGSGKTAAF P L ++ + + P +I+
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 332
Query: 76 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR 135
PTREL Q+H+ ++ + ++R V GG S Q AL+ +IVV TPGR+IDH++
Sbjct: 333 CPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVK 392
Query: 136 NSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 195
+ R+ ++GF ++ + RQT+LFSAT + +++L +
Sbjct: 393 KK-ATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451
Query: 196 SLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQA 255
L P+R+ + +T + L T + V++F K
Sbjct: 452 ILIDPIRVVQGDIGEANEDVTQIVEILHSGPS-KWNWLTRRLVEFTSSGSVLLFVTKKAN 510
Query: 256 AHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 315
A L LHG++ Q++R + + F+K+ + L+ATDVAARGLDI ++TV
Sbjct: 511 AEELANNLKQEGHNLGLLHGDMDQSERNKVILDFKKKDIPVLVATDVAARGLDIPSIKTV 570
Query: 316 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
INY RD+ ++ HR+GRT RAG +G A T +T D
Sbjct: 571 INYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
Score = 37 (18.1 bits), Expect = 8.5e-46, Sum P(2) = 8.5e-46
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 563 AKEMRELFHSDMSEKKQKRTGGIGKK 588
+KE+ +L + +K + GG GKK
Sbjct: 625 SKELLDLAMQNAWFRKSRFKGGKGKK 650
Score = 37 (18.1 bits), Expect = 8.5e-46, Sum P(2) = 8.5e-46
Identities = 17/63 (26%), Positives = 21/63 (33%)
Query: 510 GKDKKEKAGISMVDLAYRRXXXXXXXXXXLDAGKIVKSNGKKSKHSSQESNSRAKEMREL 569
GK KK G L YR + V SN + K S+ R M+
Sbjct: 646 GKGKKLNIGGG--GLGYRERPGLGSENSDRGSNNNVMSNYEAYKPSTGAMGDRLTAMKAA 703
Query: 570 FHS 572
F S
Sbjct: 704 FQS 706
>TAIR|locus:2152099 [details] [associations]
symbol:AT5G65900 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
EMBL:AL021684 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 EMBL:AB018108 EMBL:AY059930
EMBL:BT001188 EMBL:AJ012745 IPI:IPI00526354 PIR:T05883 PIR:T51352
RefSeq:NP_201391.1 UniGene:At.19658 UniGene:At.66704
ProteinModelPortal:Q9SB89 SMR:Q9SB89 PaxDb:Q9SB89 PRIDE:Q9SB89
EnsemblPlants:AT5G65900.1 GeneID:836719 KEGG:ath:AT5G65900
GeneFarm:951 TAIR:At5g65900 InParanoid:Q9SB89 OMA:HLENTNG
PhylomeDB:Q9SB89 ProtClustDB:CLSN2916378 Genevestigator:Q9SB89
GermOnline:AT5G65900 Uniprot:Q9SB89
Length = 633
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 120/387 (31%), Positives = 193/387 (49%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LS ++ + +G+++ T IQA IP + G D+ G+A TGSGKT AF +P +E LLY
Sbjct: 159 LSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVE-LLY 217
Query: 63 RPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
R K P VL++ PTRELA+Q + + +++ ++ V+GG K + L
Sbjct: 218 RVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEILAKGV 277
Query: 121 DIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTML 180
+++VATPGR++DHL N+ R+LE F ++ +++ L PK RQT L
Sbjct: 278 NLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQTSL 337
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSK 240
FSAT + V++L ++SLT P+ + D K + +L L
Sbjct: 338 FSATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLLFLLTFLKRF 397
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K+++F T ++ LF E+ G + Q +R F K L+ T
Sbjct: 398 QGKKKIMVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTFLQFIKAETGILLCT 457
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA-GREGYAVTFVTDNDRSLLKAIA 359
+VAARGLD V ++ Y P + T Y+HRVGRTAR G +G A+ +T + ++ +
Sbjct: 458 NVAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTPQELKFIQYL- 516
Query: 360 KRAGSKLKSRIVAEQSITKWSKIIEQM 386
K A ++ E+ + +E +
Sbjct: 517 KAAKIPVEEHEFEEKKLLDVKPFVENL 543
>TIGR_CMR|CPS_0174 [details] [associations]
symbol:CPS_0174 "ATP-dependent RNA helicase RhlB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006402
"mRNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0006401 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY ProtClustDB:PRK04837
RefSeq:YP_266942.1 ProteinModelPortal:Q48AH1 STRING:Q48AH1
GeneID:3521970 KEGG:cps:CPS_0174 PATRIC:21463765
BioCyc:CPSY167879:GI48-277-MONOMER Uniprot:Q48AH1
Length = 428
Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
Identities = 121/353 (34%), Positives = 180/353 (50%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+LNL+ ++ EA+G+ T IQA +P+ L G D+ G A TG GKT AF T LL
Sbjct: 13 DLNLAPQVVTGLEAMGFDYCTSIQAKSLPVLLQGTDLAGQAQTGEGKTIAFLAATFHHLL 72
Query: 62 YRPKRIPAI---RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
K P R LI+ PTRELA+Q+H ++A+ T +R +V GG + Q L +
Sbjct: 73 Q--KEAPTHNQPRALIMAPTRELAIQIHRDATEMAKSTGLRLGVVYGGEGYESQRLELEA 130
Query: 119 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPK--RR 176
DI++ T GR+ID+++ + R+ +LGF +I + P R
Sbjct: 131 GVDILIGTCGRLIDYMKQGI-YNLKNIEVIVLDEADRMFDLGFIKDIRYMFDKMPPATER 189
Query: 177 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS 236
+MLFSATL+ V EL + P + +P K S ++ ++ +L +
Sbjct: 190 LSMLFSATLSFRVKELAFDHMNDPTSVEVEPEQKTNSRISEELFYPSNE---DKMTLLQT 246
Query: 237 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 296
L + + K I+F+ TK ++ ++ L G++ Q +RL+ LE F VD
Sbjct: 247 LIEEDWPEKAIVFANTKHVCEKVFDHLNADKIRVGLLTGDVPQKKRLKILEEFTDGTVDI 306
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 349
L+ATDVAARGL I V V NY P D YVHR+GRT RAG G+A++ +
Sbjct: 307 LVATDVAARGLHIPSVTHVFNYDLPDDCQDYVHRIGRTGRAGETGHAISLACE 359
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
Identities = 123/346 (35%), Positives = 175/346 (50%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT---LERLLYRPK 65
LLR + G+S PTPIQA P+A+ GRDI A TGSGKT + +P L+R+ +
Sbjct: 169 LLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR 228
Query: 66 RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVA 125
P I L+L+PTRELA Q+ K + + I C + GG Q L DIVVA
Sbjct: 229 MGPTI--LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVA 286
Query: 126 TPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATL 185
TPGR+ D L R+L++GF +I ++V+ P +RQT++++AT
Sbjct: 287 TPGRLNDILE-MRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATW 345
Query: 186 TEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSK 245
+ V ++ L P +++ + + + Q + L S+ SK
Sbjct: 346 PKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSK 405
Query: 246 VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAAR 305
VIIF TK+ +L AA +HG+ +Q +R L FR L+ATDVAAR
Sbjct: 406 VIIFCSTKRMCDQLTRNL-TRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAAR 464
Query: 306 GLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
GLD+ ++ V+NY P + YVHR+GRT RAG G A TF D D
Sbjct: 465 GLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQD 510
>SGD|S000003570 [details] [associations]
symbol:HCA4 "DEAD box RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0005730 "nucleolus" evidence=IEA;IC]
[GO:0006364 "rRNA processing" evidence=IEA;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA;IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000003570
GO:GO:0005524 GO:GO:0005730 EMBL:BK006943 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 EMBL:U72149 EMBL:Z49308 EMBL:AY693118
PIR:S56805 RefSeq:NP_012501.1 ProteinModelPortal:P20448 SMR:P20448
DIP:DIP-6819N IntAct:P20448 MINT:MINT-620511 STRING:P20448
PaxDb:P20448 PeptideAtlas:P20448 EnsemblFungi:YJL033W GeneID:853419
KEGG:sce:YJL033W CYGD:YJL033w GeneTree:ENSGT00550000074980
NextBio:973942 Genevestigator:P20448 GermOnline:YJL033W
Uniprot:P20448
Length = 770
Score = 483 (175.1 bits), Expect = 1.7e-45, P = 1.7e-45
Identities = 121/370 (32%), Positives = 185/370 (50%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L +S P L+ + K T IQA IP++L G D+ +A TGSGKT AF +P +E+L
Sbjct: 45 DLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKL- 103
Query: 62 YRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
YR K + LI++PTRELA+Q++ ++ KI T LV+GG K + + S
Sbjct: 104 YREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERI-SR 162
Query: 120 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTM 179
+I++ TPGR++ HL ++ R L++GF + +V RQT+
Sbjct: 163 INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPSRQTL 222
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSA----DPSA-KRPSTLTXXXXXXXXXXXXNQEAVL 234
LFSAT ++ V +L +LSLT + D S K ST ++ +L
Sbjct: 223 LFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADKLDIL 282
Query: 235 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQ 292
S K+I+F + + H + F + LHG Q R E L+ F +
Sbjct: 283 FSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDKFNRA 342
Query: 293 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 352
L ATDV ARG+D V V+ CP D+ +Y+HRVGR AR G++G ++ +T ++
Sbjct: 343 QQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLTPQEQ 402
Query: 353 -SLLKAIAKR 361
+ LK + R
Sbjct: 403 EAFLKRLNAR 412
>DICTYBASE|DDB_G0287361 [details] [associations]
symbol:ddx41 "DEAD box protein abstrakt"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
Length = 671
Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 116/367 (31%), Positives = 186/367 (50%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E+ + +P++ G KP+PIQ +P+ L+GRD+ G A TGSGKT F LP + L
Sbjct: 226 EMKIPKPVIDVLLEKGIKKPSPIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPMVLFAL 285
Query: 62 YRPKRIPAIRV-----LILTPTRELAVQVHSMIEKIAQ-------FTDIRCCLVVGGLST 109
++P I+ LIL P+RELA Q + ++ +R L +GG+
Sbjct: 286 EEECKLPIIQGEGPFGLILCPSRELARQTYDLVNSFTNALHKNGGHPQLRTLLAIGGIDL 345
Query: 110 KMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELV 169
+ QE + +++ATPGR++D L N RL++LGF +I ++
Sbjct: 346 REQEHIFKKGVHMIIATPGRLLD-LLNKKKINFKLCKYLGLDEADRLIDLGFEDDIRSVL 404
Query: 170 RLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXN 229
+RQT+LFSAT+ + + E + +L P+ ++ R
Sbjct: 405 DNFTNQRQTLLFSATMPKKIQEFARSALVLPVEVNVG----RAGAANLNVTQEVEFVKPE 460
Query: 230 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 289
+ V L C + V+IF K+ + L ++A +HG+ +Q +R A++ F
Sbjct: 461 AKIVYLLECLQKTPPPVLIFCENKKDVDDIYEYLLLKQVEAVSIHGDKSQDERESAIKAF 520
Query: 290 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 349
R+ D L+ATDVA++GLD +Q VIN+ PR++ +Y+HR+GRT R G +G A TF+
Sbjct: 521 REGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYIHRIGRTGRRGNKGVATTFINK 580
Query: 350 ND-RSLL 355
N+ SLL
Sbjct: 581 NNTESLL 587
>UNIPROTKB|E2R4Y9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:AAEX03005031
Ensembl:ENSCAFT00000017696 Uniprot:E2R4Y9
Length = 623
Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 122/378 (32%), Positives = 194/378 (51%)
Query: 17 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 76
GY PTPIQ IP+ L GRD+ SA TGSGKTAAF LP + R L K P+ LILT
Sbjct: 223 GYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVITRALCESKT-PS--ALILT 279
Query: 77 PTRELAVQVHSMIEKIAQ-FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR 135
PTRELA+Q+ + +++ ++ L+VGGL Q LR +++ATPGR++D ++
Sbjct: 280 PTRELAIQIENQAKELMSGLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDIIK 339
Query: 136 NSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 195
S S +L++GF ++ +++ P QT+L SAT+ +++L
Sbjct: 340 QS-SVELCGIKIVVVDEADTMLKMGFQQQVLDILEHVPNDSQTILVSATIPTSIEQLASQ 398
Query: 196 SLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQA 255
L P+R+ S++ + +L+ K F V++F K
Sbjct: 399 LLHNPVRIITGEKNLPCSSVRQIILWVEEPAKKKKLFEILN-DKKLFKPPVLVFVDCKLG 457
Query: 256 AHRL-KILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT 314
A L + + + LK+ +H +Q +R L+ + + +++T V RGLD+I V+
Sbjct: 458 ADLLSEAVQKITGLKSVSIHSEKSQTERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRL 517
Query: 315 VINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIV 371
V+N+ P + YVH+VGR R G+ G A+TF+ +N + L IAKR GS L +++
Sbjct: 518 VVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDIAKRVKPTGSILPPQLL 577
Query: 372 AEQSITKWSKIIEQMEDQ 389
+ K EQ +D+
Sbjct: 578 NSPYLHD-QKRKEQQKDK 594
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 126/382 (32%), Positives = 191/382 (50%)
Query: 1 MELNLSRPLLRACEAL-GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 59
+E+ + LL + G PT IQ IP+AL+GRD+ G A TGSGKT F LP +
Sbjct: 192 LEMKFPKSLLEFMQKQKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVMF 251
Query: 60 LLYRPKRIPAIRV-----LILTPTRELAVQVHSMIEKI------AQFTDIRCCLVVGGLS 108
L + ++P +R LI+ P+RELA Q+ +I ++ A ++R L +GG+
Sbjct: 252 CLEQEMKLPFMRSEGPFGLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIGGVP 311
Query: 109 TKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHEL 168
Q +R IVVATPGR+ D L + R+L++GF EI +
Sbjct: 312 IGEQAKDVRDGIHIVVATPGRLSDMLTKKI-INLEVCRYLVLDEADRMLDMGFEDEIKSI 370
Query: 169 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXX 228
+RQT+LFSAT+ + K +L KP+ ++ R +
Sbjct: 371 FYFFKAQRQTLLFSATMPRKIQFFAKSALVKPIVVNVG----RAGAASLNVLQELEFVRS 426
Query: 229 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALEL 288
+ V + C + + KV+IF+ K + + ++ A +HG Q+ R +E
Sbjct: 427 ENKLVRVLECLQKTSPKVLIFAEKKVDVDNIYEYLLVKGVEVASIHGGKDQSDRHAGIEA 486
Query: 289 FRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 348
FRK D L+ATDVA++GLD G++ VIN+ P D+ +YVHR+GRT R+GR+G A TF+
Sbjct: 487 FRKNEKDVLVATDVASKGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFIN 546
Query: 349 DNDR----SLLKAIAKRAGSKL 366
S LK + AG +L
Sbjct: 547 KKSEMSVLSDLKQLLAEAGQEL 568
>ZFIN|ZDB-GENE-071022-2 [details] [associations]
symbol:ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
10" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-071022-2 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 EMBL:CR450711 IPI:IPI00898518
Ensembl:ENSDART00000125785 ArrayExpress:F1QMM9 Bgee:F1QMM9
Uniprot:F1QMM9
Length = 875
Score = 484 (175.4 bits), Expect = 2.5e-45, P = 2.5e-45
Identities = 123/385 (31%), Positives = 193/385 (50%)
Query: 5 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP 64
LS+ L+ Y +PT IQ I AL GRD+ G+A TGSGKT AF +P LE LYR
Sbjct: 77 LSKKTLKGLLEAQYRQPTEIQRQTIGFALQGRDVLGAAKTGSGKTLAFLIPVLE-CLYRE 135
Query: 65 K--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+ + + LI++PTRELA Q ++ K+ + + LV+GG K + + +I
Sbjct: 136 QWTAMDGLGALIISPTRELAYQTFEVLRKVGKNHEFSAGLVIGGKDLKDESEKIHRT-NI 194
Query: 123 VVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ TPGR++ H+ + + R+L++GF+ ++ +V PK RQT+LFS
Sbjct: 195 IICTPGRLLQHMDETATFHASDLHMLVLDEADRILDMGFADTLNAIVENLPKSRQTLLFS 254
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAK--RPSTLTXXXXXXXXXXXXNQEAVLLSLCSK 240
AT T V +L +LSL P + AK P+TL N +L S
Sbjct: 255 ATQTRSVKDLARLSLKDPEYVWVHEQAKFSTPATLEQNYVVCELHQKVN---MLYSFLRS 311
Query: 241 TFTSKVIIFSGT-KQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
K+I+F K+ + +I L + LHG Q +R+E F ++ L
Sbjct: 312 HLQKKIIVFFACCKEVQYLFRIFCRLRPGISVLALHGKQQQMKRVEVYNDFVRKTSAVLF 371
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAV-TFVTDNDRSLLKA 357
ATD+AARGLD V V+ + CP D +Y+HRVGRTAR G A+ + ++ ++
Sbjct: 372 ATDIAARGLDFPAVNWVLQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEEKGMISQ 431
Query: 358 IAKRAGSKLKSRIVAEQSITKWSKI 382
+ ++ K ++ E+ ++ K+
Sbjct: 432 LQEKKVPINKIQVNPEKLMSVQQKL 456
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 484 (175.4 bits), Expect = 2.9e-45, P = 2.9e-45
Identities = 119/363 (32%), Positives = 186/363 (51%)
Query: 18 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIR--VLIL 75
Y++PTPIQ +P+AL+GRD G A TGSGKTAAF P L ++ + + P +I+
Sbjct: 277 YTQPTPIQCQGVPIALSGRDAIGIAKTGSGKTAAFIWPILVHIMDQKELEPGEGPIAVIV 336
Query: 76 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR 135
PTREL Q+H+ ++ + +R V GG S Q AL+ +IVV TPGR+IDH++
Sbjct: 337 CPTRELCQQIHAECKRFGKAYGLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVK 396
Query: 136 NSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 195
+ R+ ++GF ++ + RQT+LFSAT + +++L +
Sbjct: 397 KK-ATSLQRVTFLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 455
Query: 196 SLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQA 255
L P+R+ + +T + L T V++F K
Sbjct: 456 ILVDPIRVVQGDIGEANEDITQIVEVLQSGQD-KWGWLTRRLVEFTSAGSVLVFVTKKAN 514
Query: 256 AHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 315
L LHG++ Q++R + + F+K+++ L+ATDVAARGLDI ++TV
Sbjct: 515 CEELATNLIQEGYSLGLLHGDMDQSERNKVIADFKKKNLPVLVATDVAARGLDIPSIRTV 574
Query: 316 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQS 375
+NY RD+ ++ HR+GRT RAG +G A T +T D S AG +++ A QS
Sbjct: 575 VNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTTKDTSF-------AGDLVRNLEGANQS 627
Query: 376 ITK 378
++K
Sbjct: 628 VSK 630
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 121/369 (32%), Positives = 186/369 (50%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 68
+L +A G+ KPT IQ P+AL+GRD+ G A TGSGKT ++ LP + + +P P
Sbjct: 124 VLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAP 183
Query: 69 AIR--VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVAT 126
VL+L PTRELAVQ+ + K + IR V GG+ Q L +IV+AT
Sbjct: 184 GDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIAT 243
Query: 127 PGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 186
PGR+ID L + R+L++GF +I ++V RQT+++SAT
Sbjct: 244 PGRLIDMLEIGKTNLKRVTYLVLDEAD-RMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 302
Query: 187 EDVDELIKLSLTKPLRLSADPSAKRPS-TLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSK 245
++V +L L P+++ S +T ++ L S+ K
Sbjct: 303 KEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYK 362
Query: 246 VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAAR 305
+IF+ TK+ + A +HG+ Q +R L+ FR ++ATDVAAR
Sbjct: 363 TLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAAR 422
Query: 306 GLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL---LKAIAKRA 362
G+D+ G+ VINY P ++ YVHR+GRT RAG G A++F T+ ++ L L +I + A
Sbjct: 423 GIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREA 482
Query: 363 GSKLKSRIV 371
+ ++
Sbjct: 483 NQNIPPELL 491
>UNIPROTKB|P21693 [details] [associations]
symbol:dbpA species:83333 "Escherichia coli K-12"
[GO:0003724 "RNA helicase activity" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0033677 "DNA/RNA helicase
activity" evidence=IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IMP]
[GO:0034459 "ATP-dependent 3'-5' RNA helicase activity"
evidence=IDA] [GO:0019843 "rRNA binding" evidence=IDA] [GO:0043531
"ADP binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0043531
GO:GO:0019843 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:X52647 PIR:B64884 RefSeq:NP_415859.1 RefSeq:YP_489613.1
ProteinModelPortal:P21693 SMR:P21693 IntAct:P21693 PRIDE:P21693
EnsemblBacteria:EBESCT00000004879 EnsemblBacteria:EBESCT00000014318
GeneID:12933991 GeneID:947153 KEGG:ecj:Y75_p1320 KEGG:eco:b1343
PATRIC:32117966 EchoBASE:EB0206 EcoGene:EG10210
HOGENOM:HOG000268809 KO:K05591 OMA:HIDPARF ProtClustDB:PRK11776
BioCyc:EcoCyc:EG10210-MONOMER BioCyc:ECOL316407:JW1337-MONOMER
BioCyc:MetaCyc:EG10210-MONOMER Genevestigator:P21693 GO:GO:0034459
GO:GO:0033677 InterPro:IPR005580 Pfam:PF03880 Uniprot:P21693
Length = 457
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 124/366 (33%), Positives = 179/366 (48%)
Query: 3 LNLSRPL-LRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
LN+ P L LGY TP+QAA +P L G+D+ A TGSGKTAAF L L+++
Sbjct: 7 LNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI- 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMP 120
+ + L+L PTRELA QV + ++A+F + + + GG MQ +L+ P
Sbjct: 66 --DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAP 123
Query: 121 DIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTML 180
I+VATPGR++DHL+ + R+L++GFS I +++R P RQT+L
Sbjct: 124 HIIVATPGRLLDHLQKG-TVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSK 240
FSAT E + + PL + D + P + +L L S
Sbjct: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTDALPPI----EQQFYETSSKGKIPLLQRLLSL 238
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
S ++F TK+ + A LHG+L Q R + L F L+AT
Sbjct: 239 HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI ++ V+N+ D +VHR+GRTARAG G A++F + I+
Sbjct: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358
Query: 361 RAGSKL 366
KL
Sbjct: 359 MLQIKL 364
>MGI|MGI:1915247 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915247
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 GO:GO:0005622
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
GeneTree:ENSGT00610000086076 CTD:83479 HOGENOM:HOG000006599
HOVERGEN:HBG106120 OMA:VTRPIID EMBL:AK004833 EMBL:AK013179
EMBL:AK076462 EMBL:BC023840 IPI:IPI00119928 IPI:IPI00226119
RefSeq:NP_080776.1 UniGene:Mm.385462 UniGene:Mm.486546
ProteinModelPortal:Q9DBN9 SMR:Q9DBN9 PhosphoSite:Q9DBN9
PRIDE:Q9DBN9 Ensembl:ENSMUST00000027655 GeneID:67997 KEGG:mmu:67997
UCSC:uc007cut.1 UCSC:uc007cuu.2 InParanoid:Q9DBN9 OrthoDB:EOG4K9BBZ
ChiTaRS:DDX59 NextBio:326168 Bgee:Q9DBN9 CleanEx:MM_DDX59
Genevestigator:Q9DBN9 Uniprot:Q9DBN9
Length = 619
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 121/403 (30%), Positives = 204/403 (50%)
Query: 17 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 76
GY PTPIQ IP+ L GRDI SA TGSGKTAAF LP + R K P+ LILT
Sbjct: 222 GYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIRAFSEDKT-PS--ALILT 278
Query: 77 PTRELAVQVHSMIEKIAQ-FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR 135
PTRELA+Q+ +++ ++ L+VGGL Q LR +++ATPGR++D ++
Sbjct: 279 PTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDIIK 338
Query: 136 NSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 195
S S +L++GF ++ +++ P QT+L SAT+ + +++L
Sbjct: 339 QS-SVSLSGIKIVVVDEADTMLKMGFQQQVLDVLEHTPGDCQTILVSATIPDSIEQLTDQ 397
Query: 196 SLTKPLRL-SADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQ 254
L P+R+ + D + P ++ + K F V++F K
Sbjct: 398 LLHNPVRIITGDKNL--PCASVRQIILWVEDPAKKKKLFEILNDQKLFKPPVLVFVDCKL 455
Query: 255 AAHRL-KILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQ 313
A L + + + L + +H +Q +R + L+ + + +++T V RGLD++ V+
Sbjct: 456 GADLLSEAVQKITGLNSTSIHSEKSQVERRDILKGLLEGDYEVVVSTGVLGRGLDLVNVK 515
Query: 314 TVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRI 370
V+N+ P + YVH+VGR R G+ G A+TF+ +N + L +AKR GS L ++
Sbjct: 516 LVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDVAKRVKPTGSILPPQL 575
Query: 371 VAEQSITKWSKIIEQMEDQVA-AILQXXXXXXILRKAEMEATK 412
+ + + + +Q + Q +++ I+RK E +++
Sbjct: 576 LNSPYLHEQKRKEQQKDRQTQNSLVTGANLMDIIRKHEKSSSQ 618
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 126/372 (33%), Positives = 190/372 (51%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 68
+L + G+++PTPIQ+ P+A+ GRD+ G A TGSGKT ++ LP + + +P
Sbjct: 110 VLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAH 169
Query: 69 AIR--VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVAT 126
VL+L PTRELAVQ+ K + I+ + GG+ Q L+ +IV+AT
Sbjct: 170 GDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIAT 229
Query: 127 PGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 186
PGR+ID + S + R+L++GF +I ++V RQT+ +SAT
Sbjct: 230 PGRLID-MMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWP 288
Query: 187 EDVDELIKLSLTKPLRL---SADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFT 243
++V++L K L P ++ S+D A R + N+ LL
Sbjct: 289 KEVEQLSKKFLYNPYKVIIGSSDLKANR--AIRQIVDVISESQKYNKLVKLLEDIMDG-- 344
Query: 244 SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA 303
S++++F TK+ ++ + A +HG+ +QA+R L FR + ATDVA
Sbjct: 345 SRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVA 404
Query: 304 ARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT-DNDRSL--LKAIAK 360
ARGLD+ V+ VINY P L YVHR+GRT RAG +G A TF T N R L I +
Sbjct: 405 ARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTNILQ 464
Query: 361 RAGSKLKSRIVA 372
AG K+ + +
Sbjct: 465 EAGQKVSPELAS 476
>TAIR|locus:2076351 [details] [associations]
symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
Length = 612
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 126/371 (33%), Positives = 184/371 (49%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
LNL+ +R C+ Y +PTP+Q IP+ L RD+ A TGSGKTAAF P + ++
Sbjct: 162 LNLN---IRRCK---YVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMK 215
Query: 63 -----RPKRIPAIR--VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
RP+ A+ +IL+PTRELA Q+H +K + T ++ + GG Q
Sbjct: 216 DQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRE 275
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLC--P 173
L DI+VATPGR+ D L + R+L++GF +I ++V P
Sbjct: 276 LERGCDILVATPGRLNDLLERAR-VSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMP 334
Query: 174 KR--RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQE 231
R RQTMLFSAT + L ++ + L+ +T +
Sbjct: 335 PRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHL 394
Query: 232 AVLLSLCSKTFT--SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 289
LL +T S ++F TK+ A L+ + A +HG+ TQ +R AL F
Sbjct: 395 MDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSF 454
Query: 290 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 349
+ L+ATDVAARGLDI V V+N+ P D+ YVHR+GRT RAG+ G A F +
Sbjct: 455 KTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNE 514
Query: 350 NDRSLLKAIAK 360
N+ L +++A+
Sbjct: 515 NNAQLARSLAE 525
>TAIR|locus:2119176 [details] [associations]
symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
Uniprot:Q9SZB4
Length = 542
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 124/382 (32%), Positives = 183/382 (47%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
M++ PLLR + G PTPIQ +P+ L+GRD+ G A TGSGKT F LP +
Sbjct: 100 MDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILA 159
Query: 61 LYRPKRIPAIR-----VLILTPTRELAVQVHSMIEK-IAQFTD-----IRCCLVVGGLST 109
L +P L++ P+RELA Q + ++E+ +A + +R L +GG+
Sbjct: 160 LQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDM 219
Query: 110 KMQETALRSMPDIVVATPGRMIDHL-RNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHEL 168
+ Q ++ IVVATPGR+ D L + MS RL++LGF +I +
Sbjct: 220 RSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEAD--RLVDLGFEDDIRHV 277
Query: 169 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXX 228
+RQT+LFSAT+ + +L KP+ ++ R
Sbjct: 278 FDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVG----RAGAANLDVIQEVEYVKQ 333
Query: 229 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALEL 288
+ V L C + T V+IF K + L ++A +HG Q R A+ L
Sbjct: 334 EAKIVYLLECLQKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISL 393
Query: 289 FRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 348
F+ D L+ATDVA++GLD +Q VINY P ++ +YVHR+GRT R G+ G A TF+
Sbjct: 394 FKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFIN 453
Query: 349 DNDRSLLKAIAKRAGSKLKSRI 370
N + K + K RI
Sbjct: 454 KNQSEITLLDLKHLLQEAKQRI 475
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 130/381 (34%), Positives = 189/381 (49%)
Query: 17 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYR-PKRI--PAIR-- 71
GYSKPTP+Q IP L RD+ A TGSGKTAAF LP ++ +L P + PA
Sbjct: 158 GYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNG 217
Query: 72 -------VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLST-KMQETALRSMPDIV 123
L+L+PTRELA+Q+H K + ++I+ ++ GG + Q LR+ I+
Sbjct: 218 RRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRENYRDQVNRLRAGTHIL 277
Query: 124 VATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVR--LCPKR-RQTML 180
+ATPGR+ID + R+L++GF +I ++V + PK R T +
Sbjct: 278 IATPGRLIDIIEQGF-IGLAGCRYLVLDEADRMLDMGFEPQIRKIVGQGMPPKTARTTAM 336
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSK 240
FSAT +++ L K L A + ST + + L+ +
Sbjct: 337 FSATFPKEIQVLAKDFLKDNYIFLA--VGRVGSTSENIEQRLLWVNEMEKRSNLMEILMN 394
Query: 241 TFTSK-VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+ V++F TK+ A+ L +++ +HG+L Q +R LELFR L+A
Sbjct: 395 EHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCPILVA 454
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
T VAARGLDI V+ VINY P D YVHR+GRT R G G A +F D +R +
Sbjct: 455 TAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATSFFNDKNRGI----- 509
Query: 360 KRAGSKLKSRIV-AEQSITKW 379
G LK+ IV + Q + +W
Sbjct: 510 ---GRDLKNLIVESNQEVPEW 527
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 127/373 (34%), Positives = 182/373 (48%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL- 61
LNL+ +R C+ Y KPTP+Q IP+ L GRD+ A TGSGKTAAF P + ++
Sbjct: 170 LNLN---IRRCK---YVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMK 223
Query: 62 ----YRPKRIPAIRVL--ILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
RP+ + L IL+PTRELA Q+H +K + T ++ + GG Q
Sbjct: 224 DQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRE 283
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLC--P 173
L DI+VATPGR+ D L + R+L++GF +I ++V P
Sbjct: 284 LERGVDILVATPGRLNDLLERAR-VSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMP 342
Query: 174 KR--RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQE 231
R RQT+LFSAT ++ L L + L+ + +
Sbjct: 343 PRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHL 402
Query: 232 AVLLSLCSKT-FTSK---VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 287
LL + K ++F TK+ A L+ + A +HG+ TQ +R AL+
Sbjct: 403 MDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALK 462
Query: 288 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 347
F+ L+ATDVAARGLDI V V+N+ P D+ YVHR+GRT RAG+ G A F
Sbjct: 463 AFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFF 522
Query: 348 TDNDRSLLKAIAK 360
D + SL + +A+
Sbjct: 523 NDGNTSLARPLAE 535
>TAIR|locus:2037416 [details] [associations]
symbol:RCF1 "regulator of CBF gene expression 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
Uniprot:Q8H0U8
Length = 1166
Score = 481 (174.4 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 125/379 (32%), Positives = 186/379 (49%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L+ +L + L Y KP PIQ +P+ ++GRD G A TGSGKT F LP L +
Sbjct: 533 QTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIK 592
Query: 62 YRP--KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
+P + L++ PTREL Q+HS I K ++ IRC V GG Q + L+
Sbjct: 593 DQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRG 652
Query: 120 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXX--XXRLLELGFSAEIHELVRLCPKRRQ 177
+IVV TPGRMID L S R+ ++GF +I +++ RQ
Sbjct: 653 TEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQ 712
Query: 178 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 237
T+LFSAT V+ L + L KP+ + + +T + LL
Sbjct: 713 TVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGE 772
Query: 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
S+ K+++F +++ L ++ LHG Q R + F+ + L
Sbjct: 773 WSEK--GKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLL 830
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
IAT VAARGLD+ ++ V+N+ P YVHRVGRT RAGR+G AVTF++++D
Sbjct: 831 IATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDD------ 884
Query: 358 IAKRAGSKLKSRIVAEQSI 376
AK A +K+ ++EQ +
Sbjct: 885 -AKYAPDLVKALELSEQPV 902
>FB|FBgn0015331 [details] [associations]
symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
"establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
system development" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
Length = 619
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 119/368 (32%), Positives = 183/368 (49%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E+ + +L A G PTPIQ +P L GRD+ G A TGSGKT F LP + L
Sbjct: 181 EMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFAL 240
Query: 62 YRPKRIPAIRV-----LILTPTRELAVQVHSMIEKIAQ------FTDIRCCLVVGGLSTK 110
+ +P R LI+ P+RELA Q H +I+ ++ +IR CL +GGL
Sbjct: 241 EQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVS 300
Query: 111 MQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVR 170
+ IVVATPGR++D L + R++++GF ++ +
Sbjct: 301 EALDVISRGVHIVVATPGRLMDMLDKKI-LTLDMCRYLCMDEADRMIDMGFEEDVRTIFS 359
Query: 171 LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQ 230
+RQT+LFSAT+ + + + +L KP+ ++ + +T Q
Sbjct: 360 FFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYV------KQ 413
Query: 231 EAVLLSL--CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALEL 288
EA ++ L C + V+IF+ KQ + L ++A +HG Q +R A++
Sbjct: 414 EAKVVYLLDCLQKTAPPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDA 473
Query: 289 FRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 348
+R D L+ATDVA++GLD VQ VINY P D+ +YVHR+GRT R+ +G A T +
Sbjct: 474 YRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLIN 533
Query: 349 DN-DRSLL 355
++S+L
Sbjct: 534 KTTEQSVL 541
>UNIPROTKB|Q5T1V6 [details] [associations]
symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL136611 EMBL:AL445483 EMBL:BC014183 EMBL:BC041801
IPI:IPI00010449 IPI:IPI00217157 RefSeq:NP_001026895.2
UniGene:Hs.497332 PDB:2YQP PDBsum:2YQP ProteinModelPortal:Q5T1V6
SMR:Q5T1V6 PhosphoSite:Q5T1V6 DMDM:74762230 PaxDb:Q5T1V6
PRIDE:Q5T1V6 DNASU:83479 Ensembl:ENST00000331314
Ensembl:ENST00000447706 GeneID:83479 KEGG:hsa:83479 UCSC:uc009wzk.3
CTD:83479 GeneCards:GC01M200594 HGNC:HGNC:25360 HPA:HPA047166
neXtProt:NX_Q5T1V6 PharmGKB:PA142672000 HOGENOM:HOG000006599
HOVERGEN:HBG106120 InParanoid:Q5T1V6 OMA:VTRPIID PhylomeDB:Q5T1V6
EvolutionaryTrace:Q5T1V6 GenomeRNAi:83479 NextBio:72419
ArrayExpress:Q5T1V6 Bgee:Q5T1V6 CleanEx:HS_DDX59
Genevestigator:Q5T1V6 Uniprot:Q5T1V6
Length = 619
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 120/378 (31%), Positives = 191/378 (50%)
Query: 17 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 76
GY PTPIQ IP+ L GRDI SA TGSGKTAAF LP + R L+ K P+ LILT
Sbjct: 222 GYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRALFESKT-PS--ALILT 278
Query: 77 PTRELAVQVHSMIEKIAQ-FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR 135
PTRELA+Q+ +++ ++ L+VGGL Q L+ +++ATPGR++D ++
Sbjct: 279 PTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIK 338
Query: 136 NSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 195
S S +L++GF ++ +++ P QT+L SAT+ +++L
Sbjct: 339 QS-SVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVSATIPTSIEQLASQ 397
Query: 196 SLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQA 255
L P+R+ P ++ + K F V++F K
Sbjct: 398 LLHNPVRIITGEK-NLPCANVRQIILWVEDPAKKKKLFEILNDKKLFKPPVLVFVDCKLG 456
Query: 256 AHRL-KILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT 314
A L + + + LK+ +H +Q +R L+ + + +++T V RGLD+I V+
Sbjct: 457 ADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRL 516
Query: 315 VINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIV 371
V+N+ P + YVH++GR R G+ G A+TF+ +N + L IAKR GS L +++
Sbjct: 517 VVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWDIAKRVKPTGSILPPQLL 576
Query: 372 AEQSITKWSKIIEQMEDQ 389
+ K EQ +D+
Sbjct: 577 NSPYLHD-QKRKEQQKDK 593
>UNIPROTKB|A4QVP2 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:CM001231 GO:GO:0043581 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OrthoDB:EOG4PG98F
RefSeq:XP_003711015.1 ProteinModelPortal:A4QVP2 SMR:A4QVP2
EnsemblFungi:MGG_04400T0 GeneID:2677872 KEGG:mgr:MGG_04400
Uniprot:A4QVP2
Length = 396
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 116/358 (32%), Positives = 182/358 (50%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E+NL LLR A G+ +P+ IQ I + G D+ A +G+GKTA F++ L+++
Sbjct: 27 EMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKID 86
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K+ A LIL PTRELA Q+ ++ I F +I C +GG S + AL+ P
Sbjct: 87 TNVKQCQA---LILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTSVRDDMKALQDGPQ 143
Query: 122 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 181
+VV TPGR+ D ++ +L GF+ +I+++ +L P+ Q +L
Sbjct: 144 VVVGTPGRVHDMIQRRF-LKTDGMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVLL 202
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 241
SAT+ +DV E+ + P+R+ K TL + LS +T
Sbjct: 203 SATMPQDVLEVTTKFMRDPVRILVK---KDELTLEGIKQFYIAVEKEEWKLDTLSDLYET 259
Query: 242 FT-SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
T ++ +IF T++ L + +HG++ QAQR ++ FR LIAT
Sbjct: 260 VTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIAT 319
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
D+ ARG+D+ V VINY P + +Y+HR+GR R GR+G A+ FVT +D +++ I
Sbjct: 320 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREI 377
>ZFIN|ZDB-GENE-030131-1927 [details] [associations]
symbol:ddx41 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490
ZFIN:ZDB-GENE-030131-1927 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
EMBL:CABZ01072950 EMBL:CABZ01072951 EMBL:CABZ01072952
IPI:IPI00961669 Ensembl:ENSDART00000061987 Bgee:F1QQ09
Uniprot:F1QQ09
Length = 473
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 121/381 (31%), Positives = 189/381 (49%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E+ + +L+ + G PTPIQ IP L+GRD+ G A TGSGKT F LP + L
Sbjct: 41 EMKFPQAILKGLKKKGIVHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPIIMFCL 100
Query: 62 YRPKRIPAIRV-----LILTPTRELAVQVH-SMIEKIAQFTD------IRCCLVVGGLST 109
+ KR+P + LI+ P+ +A H +IE + + +RC L +GG+S
Sbjct: 101 EQEKRLPFCKREGPYGLIICPSVNVAKHTHHGIIEYYCKLLEDEGAPQMRCALCIGGMSV 160
Query: 110 KMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELV 169
K Q M + +ATPGR++D L M R++++GF +I +
Sbjct: 161 KEQ------MEVVKLATPGRLMDLLNKKM-VSLDICRYLALDEADRMIDMGFEEDIRTIF 213
Query: 170 RLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXN 229
+RQT+LFSAT+ + + K +L KP+ ++ R +
Sbjct: 214 SYFKGQRQTLLFSATMPKKIQNFAKSALVKPITINVG----RAGAASLDVIQEVEYVKEE 269
Query: 230 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 289
+ V L C + V+IF+ K + L ++A +HG Q +R +A+E F
Sbjct: 270 AKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 329
Query: 290 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 349
++ D L+ATDVA++GLD +Q V+NY P ++ +YVHR+GRT R+G+ G A TF+
Sbjct: 330 KEGKKDVLVATDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTGIATTFINK 389
Query: 350 N-DRSLL---KAIAKRAGSKL 366
D S+L KA+ A K+
Sbjct: 390 GCDESVLMDLKALLVEAKQKV 410
>UNIPROTKB|Q8EJQ5 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
Identities = 124/363 (34%), Positives = 183/363 (50%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L + +A G+ TPIQA +P+ L +DI G A TG+GKT AF + T LL
Sbjct: 13 DLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLL 72
Query: 62 YR--P--KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 117
P +++ R +I+ PTRELA+Q+ +A+ T ++ +V GG S +Q L
Sbjct: 73 SSSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQRKVLD 132
Query: 118 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPK--R 175
DI++ T GR+ID++R + R+ +LGF +I L R P +
Sbjct: 133 QGVDILIGTTGRIIDYVRQGI-INLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNADQ 191
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLL 235
R MLFSATL+ V EL + P+++ P K + ++ +LL
Sbjct: 192 RLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQE---DKMRLLL 248
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
+L + + K I+FS TK + L + L G++ Q +R+ LE F + +D
Sbjct: 249 TLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLD 308
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARGL I V V NY P D YVHR+GRT RAG +G +V+F + L
Sbjct: 309 ILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYALNL 368
Query: 356 KAI 358
AI
Sbjct: 369 PAI 371
>TIGR_CMR|SO_0407 [details] [associations]
symbol:SO_0407 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
Identities = 124/363 (34%), Positives = 183/363 (50%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L + +A G+ TPIQA +P+ L +DI G A TG+GKT AF + T LL
Sbjct: 13 DLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLL 72
Query: 62 YR--P--KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 117
P +++ R +I+ PTRELA+Q+ +A+ T ++ +V GG S +Q L
Sbjct: 73 SSSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQRKVLD 132
Query: 118 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPK--R 175
DI++ T GR+ID++R + R+ +LGF +I L R P +
Sbjct: 133 QGVDILIGTTGRIIDYVRQGI-INLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNADQ 191
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLL 235
R MLFSATL+ V EL + P+++ P K + ++ +LL
Sbjct: 192 RLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQE---DKMRLLL 248
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
+L + + K I+FS TK + L + L G++ Q +R+ LE F + +D
Sbjct: 249 TLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLD 308
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARGL I V V NY P D YVHR+GRT RAG +G +V+F + L
Sbjct: 309 ILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYALNL 368
Query: 356 KAI 358
AI
Sbjct: 369 PAI 371
>TAIR|locus:2076436 [details] [associations]
symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
Uniprot:Q9M2F9
Length = 646
Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
Identities = 122/374 (32%), Positives = 178/374 (47%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E++L L + Y KPTP+Q IP+ GRD+ A TGSGKTAAF P + ++
Sbjct: 150 EIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIM 209
Query: 62 Y-----RPKRIPAIRVL--ILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 114
RP+ + + L IL+PTRELA Q+H K + T ++ + GG Q
Sbjct: 210 KDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIR 269
Query: 115 ALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLC-- 172
L DI+VATPGR+ D L R+L++GF +I ++V+
Sbjct: 270 ELERGVDILVATPGRLNDLLERGR-VSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDM 328
Query: 173 --PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQ 230
P RQTMLFSAT ++ L L+ + L+ + +
Sbjct: 329 PPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSDKRSH 388
Query: 231 EAVLLSLCSKTFT----SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEAL 286
LL + + ++F TK+ A L+ + A +HG+ +Q +R AL
Sbjct: 389 LMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVAL 448
Query: 287 ELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 346
F+ L+ATDVAARGLDI V V+N+ P D+ YVHR+GRT RAG G A F
Sbjct: 449 RSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAF 508
Query: 347 VTDNDRSLLKAIAK 360
DN+ ++ K +A+
Sbjct: 509 FNDNNTTMAKPLAE 522
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 478 (173.3 bits), Expect = 1.9e-44, P = 1.9e-44
Identities = 131/397 (32%), Positives = 192/397 (48%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
++ +S +L A + Y KPTPIQA IP ++GRD+ G A TGSGKT AF LP +
Sbjct: 360 VQCGISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHI 419
Query: 61 L-YRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
L RP +I+TPTRELA+Q+ +K ++ +R V GG Q L+
Sbjct: 420 LDQRPVGEAEGPLAVIMTPTRELALQITKECKKFSKSLALRVVCVYGGTGISEQIAELKR 479
Query: 119 MPDIVVATPGRMIDHL--RNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRR 176
+I+V TPGRMID L N R+ ++GF ++ +V R
Sbjct: 480 GAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRPDR 539
Query: 177 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS 236
QT++FSAT ++ L + L+KP+ + R + + LL
Sbjct: 540 QTVMFSATFPRTMEALARRILSKPVEVQV---GGRSVVCSDVEQHVIVIEEEKKFLKLLE 596
Query: 237 LCSKTFTSK--VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 294
+ + K VIIF ++ A L A+ LHG + Q R + F+
Sbjct: 597 ILGH-YQEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGAC 655
Query: 295 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR-- 352
L+AT VAARGLD+ + V+NY+CP YVHR GRT RAG +GYA TF+T+
Sbjct: 656 RLLVATSVAARGLDVKQLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEGQARY 715
Query: 353 --SLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQME 387
+LKA+ + +GS + + + EQ W+ EQ +
Sbjct: 716 SGDILKAL-ELSGSSVPAEL--EQL---WTNFKEQQK 746
WARNING: HSPs involving 656 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.131 0.360 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 602 526 0.00091 119 3 11 22 0.39 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 906
No. of states in DFA: 608 (65 KB)
Total size of DFA: 243 KB (2132 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 39.48u 0.19s 39.67t Elapsed: 00:00:03
Total cpu time: 39.56u 0.19s 39.75t Elapsed: 00:00:03
Start: Thu May 9 14:01:12 2013 End: Thu May 9 14:01:15 2013
WARNINGS ISSUED: 2