BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007481
(602 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224083077|ref|XP_002306942.1| predicted protein [Populus trichocarpa]
gi|222856391|gb|EEE93938.1| predicted protein [Populus trichocarpa]
Length = 744
Score = 989 bits (2556), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/606 (85%), Positives = 562/606 (92%), Gaps = 4/606 (0%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
MELNLSRPLLRACEALGY+KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL
Sbjct: 139 MELNLSRPLLRACEALGYTKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 198
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
L+RPKRI AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK+QE +LRSMP
Sbjct: 199 LFRPKRILAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKVQEASLRSMP 258
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF+AEIHELVRLCPKRRQTML
Sbjct: 259 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFNAEIHELVRLCPKRRQTML 318
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE+VD LIKLSLTKPLRLSADPSAKRP+ LTEEV+R+RRMREVNQEAVLL+LCSK
Sbjct: 319 FSATMTEEVDMLIKLSLTKPLRLSADPSAKRPAALTEEVLRLRRMREVNQEAVLLALCSK 378
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TFTSK IIFSGTKQAAHRLKILFGLA KAAELHGNLTQAQRL+ALELFRKQ VDFLIAT
Sbjct: 379 TFTSKAIIFSGTKQAAHRLKILFGLAGFKAAELHGNLTQAQRLDALELFRKQEVDFLIAT 438
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDIIGVQTVINYACPRDLTSY+HRVGRTARAGREGYAVTFVTDNDRSLLKAIAK
Sbjct: 439 DVAARGLDIIGVQTVINYACPRDLTSYIHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 498
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
RAGSKL+SRIVAEQSI KWS++IE ME+QVA +LQ+EREER +RKAEMEATKAENMIAHK
Sbjct: 499 RAGSKLRSRIVAEQSIIKWSQMIENMENQVADVLQQEREERAIRKAEMEATKAENMIAHK 558
Query: 421 EEIFARPKRTWFVTEKEKKLAVKADK-ASIEKGKGSGNEVTSAQQAEDLKIKEKRKRERE 479
+EIF+RPKRTWFVTE+EK LA KA K +S+EK KGSGNEV SAQQAEDLK+KEKRKRERE
Sbjct: 559 DEIFSRPKRTWFVTEREKMLAAKAAKQSSVEKEKGSGNEVMSAQQAEDLKMKEKRKRERE 618
Query: 480 KNLPRKERRKLEAAREMLEDEDQVDKLQGSGKDKKEKAGISMVDLAYRRAKAVKAKQKAL 539
KNLPRK+RRKL+AAREMLEDED +K +GSGK+KKEK G+S+VDL YRRAKA KA +KA+
Sbjct: 619 KNLPRKKRRKLQAAREMLEDEDLTEKSEGSGKNKKEKTGLSLVDLGYRRAKAAKAVKKAM 678
Query: 540 DAGKIVKSNGKKSKHSSQE-SNSRAKEMRELFHSDMSEKKQK-RTGGIG-KKPKHSFKSK 596
DAGK V+ G K E + SR +EM+ELF SDMSEKKQK R+ G G KK K+SFKSK
Sbjct: 679 DAGKFVQKKGSKKSKQPPERTQSRTEEMQELFQSDMSEKKQKRRSSGTGNKKSKNSFKSK 738
Query: 597 SRYKRR 602
SRYKR+
Sbjct: 739 SRYKRK 744
>gi|225457931|ref|XP_002273443.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like [Vitis
vinifera]
Length = 732
Score = 983 bits (2540), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/605 (83%), Positives = 559/605 (92%), Gaps = 3/605 (0%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ELNLSRPLLRACEALGY+KPTPIQAACIP+ALTGRDICGSAITGSGKTAAF+LPTLERL
Sbjct: 128 LELNLSRPLLRACEALGYTKPTPIQAACIPIALTGRDICGSAITGSGKTAAFSLPTLERL 187
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
L+RPKR+ AIRVL+LTPTRELAVQVHSM+EK+AQFTDIRCCL+VGGLS+KMQETALRSMP
Sbjct: 188 LFRPKRVQAIRVLVLTPTRELAVQVHSMMEKLAQFTDIRCCLIVGGLSSKMQETALRSMP 247
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D+VVATPGRMIDHLRNSMSVDL+DLAVLILDEADRLLELGF+AEI ELVRLCPKRRQTML
Sbjct: 248 DVVVATPGRMIDHLRNSMSVDLEDLAVLILDEADRLLELGFNAEIRELVRLCPKRRQTML 307
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE+VDEL+KLS+TKP+RL+ADPS KRP+TLTEEVVRIRRMREVNQEAVLL+LCSK
Sbjct: 308 FSATMTEEVDELVKLSMTKPMRLAADPSTKRPATLTEEVVRIRRMREVNQEAVLLALCSK 367
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TFT+K IIFSGTKQAAHRLKILFGLA KAAELHGNLTQ QRL+ALELFRKQ VDFLIAT
Sbjct: 368 TFTAKAIIFSGTKQAAHRLKILFGLAGFKAAELHGNLTQVQRLDALELFRKQQVDFLIAT 427
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK+I K
Sbjct: 428 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKSIVK 487
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
RAGSKL+SRIVAEQSI KWS +IEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK
Sbjct: 488 RAGSKLRSRIVAEQSIIKWSHMIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 547
Query: 421 EEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREK 480
++I++RPKRTWF TEKEKK KA K S+EK GSGN V SAQQAEDLK+KEKRKREREK
Sbjct: 548 DDIYSRPKRTWFATEKEKKSVAKAAKDSLEKENGSGNNVISAQQAEDLKMKEKRKREREK 607
Query: 481 NLPRKERRKLEAAREMLEDEDQVDKLQGSGK-DKKEKAGISMVDLAYRRAKAVKAKQKAL 539
NLPRK+RRKLEAARE LEDE+Q+ KL+ G+ +KKEKAGIS+V + YRRAKAVKA +KA
Sbjct: 608 NLPRKKRRKLEAARERLEDENQIHKLKEGGRENKKEKAGISLVGIGYRRAKAVKAVKKAQ 667
Query: 540 DAGKIVKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRT--GGIGKKPKHSFKSKS 597
DAGKI + KKS+ SQ + SR +EM+ELF SDMSE+KQKR+ G KK K+SFKSKS
Sbjct: 668 DAGKIGRKANKKSERPSQTNQSRTEEMQELFQSDMSERKQKRSIRGAGKKKSKNSFKSKS 727
Query: 598 RYKRR 602
RYKR+
Sbjct: 728 RYKRK 732
>gi|255538978|ref|XP_002510554.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223551255|gb|EEF52741.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 783
Score = 965 bits (2495), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/602 (82%), Positives = 544/602 (90%), Gaps = 17/602 (2%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
ME+NLSRPLLRACE LGY+KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL
Sbjct: 150 MEINLSRPLLRACEVLGYTKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 209
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
L+RPKR+ AIRVLILTPTRELAVQVHSM+EK+AQFTDIRCCL+VGGLSTK+QE+ALRSMP
Sbjct: 210 LFRPKRVQAIRVLILTPTRELAVQVHSMVEKLAQFTDIRCCLIVGGLSTKVQESALRSMP 269
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIVVATPGRMIDHLRN+MSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML
Sbjct: 270 DIVVATPGRMIDHLRNTMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 329
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE+++ELIKLSLTKPLRLSADPS KRP+TLTEEVVRIRRMREVNQEAVLL+LCSK
Sbjct: 330 FSATMTEEINELIKLSLTKPLRLSADPSTKRPATLTEEVVRIRRMREVNQEAVLLALCSK 389
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TFTS+VIIFSGTKQAAHRLKILFGLA KAAELHGNLTQ QRL+ALELFRKQ VDFLIAT
Sbjct: 390 TFTSRVIIFSGTKQAAHRLKILFGLAGFKAAELHGNLTQVQRLDALELFRKQQVDFLIAT 449
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDIIGVQTVINYACPR+LTSYVHRVGRTARAGREGYAVTFVTD DRSLLKAIAK
Sbjct: 450 DVAARGLDIIGVQTVINYACPRELTSYVHRVGRTARAGREGYAVTFVTDTDRSLLKAIAK 509
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
RAGSKLKSRIVAEQSI KWS+IIEQMEDQVAAILQEEREE +RKAEMEATKAENMIAH+
Sbjct: 510 RAGSKLKSRIVAEQSIAKWSQIIEQMEDQVAAILQEEREEIAIRKAEMEATKAENMIAHR 569
Query: 421 EEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREK 480
++I +RPKRTWFVTEKEKKL KA KAS+ K KG ++V SAQQAE+LK+KEKRKREREK
Sbjct: 570 DDILSRPKRTWFVTEKEKKLVDKASKASMVKEKGFESKVMSAQQAEELKLKEKRKREREK 629
Query: 481 NLPRKERRKLEAAREMLEDEDQVDKL-----------------QGSGKDKKEKAGISMVD 523
NLPRK+RRKL+AAREMLEDEDQ +K+ Q K KKEK GIS+VD
Sbjct: 630 NLPRKKRRKLQAAREMLEDEDQTEKIDIFAYALTFGTSICTIRQDLRKIKKEKTGISLVD 689
Query: 524 LAYRRAKAVKAKQKALDAGKIVKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTG 583
L YRRAKA KA ++A+DAGKI++ KKSK SQ + R +EMRELF SDMSE+KQK++
Sbjct: 690 LGYRRAKAAKAVKRAVDAGKIIQKAAKKSKRPSQRTQPRTEEMRELFQSDMSERKQKKSS 749
Query: 584 GI 585
+
Sbjct: 750 SV 751
>gi|449460106|ref|XP_004147787.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like [Cucumis
sativus]
Length = 733
Score = 956 bits (2470), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/605 (83%), Positives = 553/605 (91%), Gaps = 12/605 (1%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
MELNLSRPL+RACEALGY+KPTPIQAACIPLALTGRDICGSAITGSGKTAAF+LPTLERL
Sbjct: 138 MELNLSRPLIRACEALGYAKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPTLERL 197
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
LYRPKR AIRVLILTP RELA+QVHSMIEK+AQFTDIRCCL+VGGLS K QE ALRSMP
Sbjct: 198 LYRPKRDRAIRVLILTPARELAIQVHSMIEKLAQFTDIRCCLIVGGLSRKEQEAALRSMP 257
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D+VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI ELVRLCPKRRQTML
Sbjct: 258 DVVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIRELVRLCPKRRQTML 317
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE+V+ELIKLSLTKPLRLSADP+ KRP TLTEEVVR+RRMREVNQEAVLLSLCSK
Sbjct: 318 FSATMTEEVNELIKLSLTKPLRLSADPATKRPKTLTEEVVRLRRMREVNQEAVLLSLCSK 377
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TFTSKVI+FSGTKQAAHRLKILFGLA KAAELHGNLTQ QRL+ALELFRKQ VDFLIAT
Sbjct: 378 TFTSKVIVFSGTKQAAHRLKILFGLAGFKAAELHGNLTQVQRLDALELFRKQQVDFLIAT 437
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDIIGV+TVIN+ACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK
Sbjct: 438 DVAARGLDIIGVETVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 497
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
RAGSKLKSRIVAEQSI KWS+IIEQMEDQV AIL+EEREER LRKAEMEATKAENMI H+
Sbjct: 498 RAGSKLKSRIVAEQSIKKWSEIIEQMEDQVTAILREEREERALRKAEMEATKAENMIVHQ 557
Query: 421 EEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREK 480
EEIF+RPK+TWF+T++EK+L KA KAS+EKGK SGNE SAQQAE+ K+KEKRKREREK
Sbjct: 558 EEIFSRPKKTWFITDREKRLVAKAAKASLEKGKTSGNEAVSAQQAEEEKMKEKRKREREK 617
Query: 481 NLPRKERRKLEAAREMLEDEDQVDKLQGSGKDKKEKAGISMVDLAYRRAKAVKAKQKALD 540
+LPRK+RRKLEAAREMLE+E Q DK G G+S++ LAYRRAKAVKA ++A+D
Sbjct: 618 DLPRKKRRKLEAAREMLEEEKQNDKTGG---------GLSLMKLAYRRAKAVKAVKRAVD 668
Query: 541 AGKIVKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKR--TGGIG-KKPKHSFKSKS 597
+GKIVK +K+K SS + SR++EMRE+F SDMSE+KQKR +GG G KK KHSFKSKS
Sbjct: 669 SGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGGFGKKKSKHSFKSKS 728
Query: 598 RYKRR 602
RYKR+
Sbjct: 729 RYKRK 733
>gi|449516409|ref|XP_004165239.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
28-like [Cucumis sativus]
Length = 733
Score = 953 bits (2463), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/605 (83%), Positives = 551/605 (91%), Gaps = 12/605 (1%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
MELNLSRPL+RACEALGY+KPTPIQAACIPLALTGRDICGSAITGSGKTAAF+LPTLERL
Sbjct: 138 MELNLSRPLIRACEALGYAKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPTLERL 197
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
LYRPKR AIRVLILTP RELA+QVHSMIEK+AQFTDIRCCL+VGGLS K QE ALRSMP
Sbjct: 198 LYRPKRDRAIRVLILTPARELAIQVHSMIEKLAQFTDIRCCLIVGGLSRKEQEAALRSMP 257
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D+VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI ELVRLCPKRRQTML
Sbjct: 258 DVVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIRELVRLCPKRRQTML 317
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE+V+ELIKLSLTKPLRLSADP+ KRP TLTEEVVR+RRMREVNQEAVLLSLCSK
Sbjct: 318 FSATMTEEVNELIKLSLTKPLRLSADPATKRPKTLTEEVVRLRRMREVNQEAVLLSLCSK 377
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TFTSKVI+FSGTKQAAHRLKILFGLA KAAELHGNLTQ QRL+ALELFRKQ VDFLIAT
Sbjct: 378 TFTSKVIVFSGTKQAAHRLKILFGLAGFKAAELHGNLTQVQRLDALELFRKQQVDFLIAT 437
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDIIGV+TVIN+ACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK
Sbjct: 438 DVAARGLDIIGVETVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 497
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
RAGSKLKSRIVAEQSI KWS+IIEQMEDQV AIL+EEREER LRKAEMEATKAENMI H+
Sbjct: 498 RAGSKLKSRIVAEQSIKKWSEIIEQMEDQVTAILREEREERALRKAEMEATKAENMIVHQ 557
Query: 421 EEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREK 480
EEIF+RPK+TWF+T++EK+L KA KAS+EKG SGNE SAQQAE+ K+K KRKREREK
Sbjct: 558 EEIFSRPKKTWFITDREKRLVAKAAKASLEKGNTSGNEAVSAQQAEEEKMKXKRKREREK 617
Query: 481 NLPRKERRKLEAAREMLEDEDQVDKLQGSGKDKKEKAGISMVDLAYRRAKAVKAKQKALD 540
+LPRK+RRKLEAAREMLE+E Q DK G G+S++ LAYRRAKAVKA ++A+D
Sbjct: 618 DLPRKKRRKLEAAREMLEEEKQNDKTGG---------GLSLMKLAYRRAKAVKAVKRAVD 668
Query: 541 AGKIVKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKR--TGGIG-KKPKHSFKSKS 597
+GKIVK +K+K SS + SR++EMRE+F SDMSE+KQKR +GG G KK KHSFKSKS
Sbjct: 669 SGKIVKKQNQKTKKSSHRTQSRSEEMREMFQSDMSEQKQKRRGSGGFGKKKSKHSFKSKS 728
Query: 598 RYKRR 602
RYKR+
Sbjct: 729 RYKRK 733
>gi|297800452|ref|XP_002868110.1| hypothetical protein ARALYDRAFT_493213 [Arabidopsis lyrata subsp.
lyrata]
gi|297313946|gb|EFH44369.1| hypothetical protein ARALYDRAFT_493213 [Arabidopsis lyrata subsp.
lyrata]
Length = 790
Score = 895 bits (2314), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/620 (74%), Positives = 524/620 (84%), Gaps = 20/620 (3%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
MELNLSRPLLRACE LGY KPTPIQAACIPLALTGRD+C SAITGSGKTAAFALPTLERL
Sbjct: 173 MELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERL 232
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
L+RPKR+ A RVLILTPTRELAVQ+HSMI+K+AQFTDI+C L+VGGLS + QE LRSMP
Sbjct: 233 LFRPKRVFATRVLILTPTRELAVQIHSMIQKLAQFTDIKCGLIVGGLSVREQEVVLRSMP 292
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL+ GF+ EI ELVRLCPKRRQTML
Sbjct: 293 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTML 352
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE+V EL+KLSL KPLRLSADPSA+RP LTEEVVRIRR RE NQEAVLLSLC++
Sbjct: 353 FSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLCTR 412
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF SKVIIFSGTKQAAHRLKILFGLA LKAAELHGNLTQAQRL++LELFRKQ VDFLIAT
Sbjct: 413 TFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIAT 472
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDIIGVQTVINYACPR++ SYVHRVGRTARAGREGYAVTFVTD+DRSLLK IAK
Sbjct: 473 DVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAK 532
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
+ GSKLKSR++ EQSI KWS II++MEDQ +A++ ER+ER LRKAEME KAENM+ H+
Sbjct: 533 KVGSKLKSRVIPEQSIVKWSHIIDEMEDQYSAVISAERDERALRKAEMEFAKAENMLEHR 592
Query: 421 EEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREK 480
+EI+ARPKRTWF+TEKEKKL +A+K S G SG E+ SA +AED K+KEKRKREREK
Sbjct: 593 DEIYARPKRTWFMTEKEKKLVAQAEKDSA--GNPSGGELVSADRAEDFKMKEKRKREREK 650
Query: 481 NLPRKERRKLEAAREMLEDEDQVDKL--------QGSGKDKK----EKAGISMVDLAYRR 528
NLPRK+RRKLEAAREMLED + + + GKDKK EK G+++ DL Y R
Sbjct: 651 NLPRKKRRKLEAAREMLEDNEGEEAEEEGDEKRGKSRGKDKKKQETEKKGLTLKDLGYMR 710
Query: 529 AKAVKAKQKALDAGKIVK-SNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGK 587
AKAVKAKQ+A+D+GK+ + + KK S + R +EM++LF SDMSEKKQ R G
Sbjct: 711 AKAVKAKQRAIDSGKMERPTPNKKPNRSKPRNQPRDEEMKDLFKSDMSEKKQGRGGAAAA 770
Query: 588 -----KPKHSFKSKSRYKRR 602
K K+SFKSK+RYKRR
Sbjct: 771 AKPRTKSKNSFKSKARYKRR 790
>gi|30683736|ref|NP_193396.3| DEAD-box ATP-dependent RNA helicase 28 [Arabidopsis thaliana]
gi|75338927|sp|Q9ZRZ8.1|RH28_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 28
gi|3776027|emb|CAA09214.1| RNA helicase [Arabidopsis thaliana]
gi|110736657|dbj|BAF00292.1| RNA helicase like protein [Arabidopsis thaliana]
gi|332658378|gb|AEE83778.1| DEAD-box ATP-dependent RNA helicase 28 [Arabidopsis thaliana]
Length = 789
Score = 892 bits (2305), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/622 (74%), Positives = 525/622 (84%), Gaps = 22/622 (3%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
MELNLSRPLLRACE LGY KPTPIQAACIPLALTGRD+C SAITGSGKTAAFALPTLERL
Sbjct: 170 MELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERL 229
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
L+RPKR+ A RVLILTPTRELAVQ+HSMI+ +AQFTDI+C L+VGGLS + QE LRSMP
Sbjct: 230 LFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMP 289
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL+ GF+ EI ELVRLCPKRRQTML
Sbjct: 290 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTML 349
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE+V EL+KLSL KPLRLSADPSA+RP LTEEVVRIRR RE NQEAVLLSLC++
Sbjct: 350 FSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLCTR 409
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF SKVIIFSGTKQAAHRLKILFGLA LKAAELHGNLTQAQRL++LELFRKQ VDFLIAT
Sbjct: 410 TFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIAT 469
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDIIGVQTVINYACPR++ SYVHRVGRTARAGREGYAVTFVTD+DRSLLK IAK
Sbjct: 470 DVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAK 529
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
+ GSKLKSR++ EQSI KWS+II++MEDQ +A++ ER+ER LRKAEME KAENM+ H+
Sbjct: 530 KVGSKLKSRVIPEQSIVKWSQIIDEMEDQYSAVISAERDERALRKAEMEFAKAENMLEHR 589
Query: 421 EEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREK 480
+EI+ARPKRTWF+TEKEKKL +A+K S G +G E+ SA +AEDLK+KEKRKREREK
Sbjct: 590 DEIYARPKRTWFMTEKEKKLVAQAEKDSA--GNPAGGELVSADRAEDLKMKEKRKREREK 647
Query: 481 NLPRKERRKLEAAREMLEDEDQVDKL----------QGSGKDKK----EKAGISMVDLAY 526
NLPRK+RRKLEAAREMLED + ++ + GKDKK +K G+++ DL Y
Sbjct: 648 NLPRKKRRKLEAAREMLEDNEGEEEEEDEEGDEKRGRSRGKDKKKQETDKKGLTLKDLGY 707
Query: 527 RRAKAVKAKQKALDAGKIVKSNGKKSKHSSQESNS-RAKEMRELFHSDMSEKKQKRTGGI 585
RAKAVKAKQ+A+D+GK+ + K + S+ N R +EM++LF SDM EKKQ R G
Sbjct: 708 MRAKAVKAKQRAIDSGKMERPKPDKKQSRSKPRNQPRGEEMKDLFKSDMGEKKQGRGGAA 767
Query: 586 GK-----KPKHSFKSKSRYKRR 602
K K+SFKSK+RYKRR
Sbjct: 768 AAAKPRTKSKNSFKSKARYKRR 789
>gi|357459393|ref|XP_003599977.1| ATP-dependent RNA helicase [Medicago truncatula]
gi|355489025|gb|AES70228.1| ATP-dependent RNA helicase [Medicago truncatula]
Length = 828
Score = 887 bits (2293), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/677 (70%), Positives = 542/677 (80%), Gaps = 77/677 (11%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
++LNLSRPLLRACE LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL
Sbjct: 154 LQLNLSRPLLRACEVLGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 213
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
L+RPKR+ AIRVLILTPTRELA QV SMI+ ++QFTDIRCCL+VGGLSTK QE ALRS P
Sbjct: 214 LFRPKRVHAIRVLILTPTRELAAQVQSMIKSLSQFTDIRCCLIVGGLSTKEQEVALRSRP 273
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIVVATPGRMIDHLRNSMSVDLDDL+VLILDEADRLLELGFSAEI ELVR+CPK+RQTML
Sbjct: 274 DIVVATPGRMIDHLRNSMSVDLDDLSVLILDEADRLLELGFSAEIQELVRVCPKKRQTML 333
Query: 181 FS------------------------------ATLTEDVDELIKLSLTKPL--------- 201
FS A+LTE++D I+L +T PL
Sbjct: 334 FSATMTEEVDDLIKLSLSKPLRLSADPLAKRPASLTEELDG-IRLGVT-PLERERESVGV 391
Query: 202 -------------------RLSADPSAKRPSTLTEE------------VVRIRRMREVNQ 230
R D +R + E VVR+RRMREVNQ
Sbjct: 392 APIVQKMIENWLRWYWHVERRPVDAVVQREDQIEESQIKRGKEDLEKLVVRLRRMREVNQ 451
Query: 231 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 290
EAVLL++CSKTFTSKVIIFSGTKQAAHRL+I+FGL+ LKAAELHGNLTQAQRL ALE FR
Sbjct: 452 EAVLLAMCSKTFTSKVIIFSGTKQAAHRLRIIFGLSGLKAAELHGNLTQAQRLGALEEFR 511
Query: 291 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 350
KQ VDFL+ATDVAARGLDIIGVQTVIN+ACPRDLTSYVHRVGRTARAGR G AVTFVTDN
Sbjct: 512 KQQVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGRAGSAVTFVTDN 571
Query: 351 DRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEA 410
DRSLLKAIAKRAGSKLKSRIVAEQSI KWS++IEQMEDQ++ +LQEEREE ILRKAEMEA
Sbjct: 572 DRSLLKAIAKRAGSKLKSRIVAEQSILKWSQVIEQMEDQISEVLQEEREEMILRKAEMEA 631
Query: 411 TKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKI 470
TKAENMIAHK+EIF+RPKRTWFVTEKEKK++ KA KAS++K GS +++ SAQQAEDLK+
Sbjct: 632 TKAENMIAHKDEIFSRPKRTWFVTEKEKKISAKAAKASLDKEDGSSHKMVSAQQAEDLKM 691
Query: 471 KEKRKREREKNLPRKERRKLEAAREMLEDEDQVDKLQGSGKDKKEKAGISMVDLAYRRAK 530
KEKRKREREKN+PRK+RRKLEAAREMLED++ DK +G G DK EKAG+++VDLAYRRAK
Sbjct: 692 KEKRKREREKNMPRKKRRKLEAAREMLEDDEHDDKPKGKGTDKNEKAGLTLVDLAYRRAK 751
Query: 531 AVKAKQKALDAGKIVKSNGKKSKHSS----QESNSRAKEMRELFHSDMSEKKQKRTG-GI 585
AVKA ++ALD+GKI+K KKS S+ S+SR +EMRELF +DM +KK K+ G G+
Sbjct: 752 AVKATKRALDSGKIIKKPQKKSNKSNPSRKTSSSSRTEEMRELFQTDMKDKKPKQRGSGV 811
Query: 586 GKKPKHSFKSKSRYKRR 602
GKK + SFKSKSRYKR+
Sbjct: 812 GKKAQKSFKSKSRYKRK 828
>gi|414886235|tpg|DAA62249.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 770
Score = 887 bits (2292), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/610 (73%), Positives = 524/610 (85%), Gaps = 13/610 (2%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ELNLSRPL+RACEALGY KPTPIQAACIPLALTGRDICGSAITGSGKTAAF+LP LERL
Sbjct: 165 LELNLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERL 224
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
L+RPKR+PAIRVLILTPTRELA QVHSMIEK+AQFTDIRCCL+VGGLSTK+QE ALRSMP
Sbjct: 225 LFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRSMP 284
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIVVATPGR+IDHLRNS+SV L+DLAV+ILDEADRLLELGFSAEI EL+R+CPKRRQTML
Sbjct: 285 DIVVATPGRIIDHLRNSLSVGLEDLAVVILDEADRLLELGFSAEIQELIRMCPKRRQTML 344
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE++DELIKLSL KP+RL ADPS KRP+TLTEEVVRIRR RE NQEAVLL+LC K
Sbjct: 345 FSATMTEEIDELIKLSLNKPVRLEADPSLKRPATLTEEVVRIRRARESNQEAVLLALCLK 404
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF VIIFSGTKQ+AHRLKI+FGL+ +KAAELHGNLTQAQRLEALELFRKQ VDFLIAT
Sbjct: 405 TFKRSVIIFSGTKQSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFRKQEVDFLIAT 464
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARG+DI+GVQTVIN+ACPRD+ +Y+HRVGRTARAGREGYAVTFVTD+DRSLLKAIAK
Sbjct: 465 DVAARGIDIVGVQTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAK 524
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
+AGS+LKSRIVAE+ + + +++IEQ+EDQ++ I++EE+ ER RKAEME KAENMIAHK
Sbjct: 525 KAGSQLKSRIVAEKPVAECAQLIEQLEDQISIIIREEKVEREARKAEMEIAKAENMIAHK 584
Query: 421 EEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREK 480
+EI++RPKRTWF TE+EKKL V A K S+ +GK + + SA+QAEDL++KEK++RE EK
Sbjct: 585 DEIYSRPKRTWFATEREKKLLVAAAKESLGQGKSTSG-IISAKQAEDLRLKEKKRREHEK 643
Query: 481 NLPRKERRKLEAAREMLEDEDQVDKL-QGSGKDKKEKAGISMVDLAYRRAKAVKAKQKAL 539
+LPRK+RR+LEA REMLEDED+ D+ + S + KK K G S+VD AYR+AK++KA K
Sbjct: 644 DLPRKKRRRLEAQREMLEDEDEDDEEAKESDRGKKLKKGQSLVDAAYRKAKSLKAASKRG 703
Query: 540 DAGKIVKSNGKKSKHSSQESN---SRAKEMRELFHSDMSEKKQ----KRTGGIGKKPKHS 592
S GKK K++ Q S +R +EMRELF +DMSE KQ K+ K +
Sbjct: 704 PGA----SKGKKEKNARQYSEKTPNRHEEMRELFQNDMSEWKQGRSSKKNNNFAHKKSKA 759
Query: 593 FKSKSRYKRR 602
F SK+RYKRR
Sbjct: 760 FNSKARYKRR 769
>gi|414589946|tpg|DAA40517.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 773
Score = 875 bits (2262), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/607 (71%), Positives = 521/607 (85%), Gaps = 8/607 (1%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ELNLSRPL+RACEALGY KPTPIQAACIPLALTGRDICGSAITGSGKTAAF+LP LERL
Sbjct: 170 LELNLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERL 229
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
L+RPKR+PAIRVLILTPTRELA Q+HSM+EK+AQFTDIRCCL+VGGLSTK+QE ALRSMP
Sbjct: 230 LFRPKRVPAIRVLILTPTRELAAQIHSMVEKLAQFTDIRCCLIVGGLSTKIQEVALRSMP 289
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIVVATPGR+IDHLRNS+SV L+DLAV+ILDEADRLLELGFSAEI EL+R+CPKRRQTML
Sbjct: 290 DIVVATPGRIIDHLRNSLSVGLEDLAVVILDEADRLLELGFSAEIQELIRMCPKRRQTML 349
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE++DEL+KLSL KP+RL ADPS KRP+TLTEEVVRIRR RE NQEAVLL+LC K
Sbjct: 350 FSATMTEEIDELVKLSLNKPVRLEADPSLKRPATLTEEVVRIRRARESNQEAVLLALCLK 409
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF VIIFSGTKQ+AHRLKI+FGL+ +KAAELHGNLTQAQRLEALELF+K+ VDFLIAT
Sbjct: 410 TFKRSVIIFSGTKQSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKKEVDFLIAT 469
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARG+DI+GVQTVIN+ACPRD+ +Y+HRVGRTARAGREGYAVTFVTD+DR LLKAIAK
Sbjct: 470 DVAARGIDIVGVQTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDDDRCLLKAIAK 529
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
+AGS+LKSRIVAE+ + + +++IEQ+E Q++ I++EER ER RKAEME KAENMIAHK
Sbjct: 530 KAGSQLKSRIVAEKPVAECARLIEQLEGQISIIIREERVEREARKAEMEIAKAENMIAHK 589
Query: 421 EEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREK 480
+EI++RPKRTWF TE+EKKL A K S++ GK + V SA++AEDL++KEKR+RE EK
Sbjct: 590 DEIYSRPKRTWFATEREKKLLAAAAKESLDHGKSTSG-VISAKKAEDLRLKEKRRREHEK 648
Query: 481 NLPRKERRKLEAAREMLEDEDQVDKLQGSGKDKKEKAGISMVDLAYRRAKAVKAKQKALD 540
NLPRK+RR+LEA REMLEDED +K + + + K+ G S+VD AYR+AK++KA K
Sbjct: 649 NLPRKKRRRLEAQREMLEDEDD-EKTKENDRGKQPMKGQSLVDAAYRKAKSLKAASKRAP 707
Query: 541 AGKIVKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIG-----KKPKHSFKS 595
+ K + +HS + N R +EMR+LF +DMSE KQ R+ KK ++SFKS
Sbjct: 708 GARKGKKEKNERQHSEKAPN-RHEEMRDLFQNDMSEWKQGRSSKKNNKFAPKKSRNSFKS 766
Query: 596 KSRYKRR 602
K+RYKR+
Sbjct: 767 KARYKRK 773
>gi|226509858|ref|NP_001147574.1| ATP-dependent RNA helicase DRS1 [Zea mays]
gi|195612276|gb|ACG27968.1| ATP-dependent RNA helicase DRS1 [Zea mays]
Length = 770
Score = 874 bits (2257), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/610 (73%), Positives = 524/610 (85%), Gaps = 13/610 (2%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ELNLSRPL+RACEALGY KPTPIQAACIPLALTGRDICGSAITGSGKTAAF+LP LERL
Sbjct: 165 LELNLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERL 224
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
L+RPKR+PAIRVLILTPTRELA QVHSMIEK+AQFTDIRCCL+VGGLSTK+QE ALRSMP
Sbjct: 225 LFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRSMP 284
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIVVATPGR+IDHLRNS+SV L+DLAV+ILDEADRLLELGFSAEI EL+R+CPKRRQTML
Sbjct: 285 DIVVATPGRIIDHLRNSLSVGLEDLAVVILDEADRLLELGFSAEIQELIRMCPKRRQTML 344
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE++DELIKLSL KP+RL ADPS KRP+TLTEEVVRIRR RE NQEAVLL+LC K
Sbjct: 345 FSATMTEEIDELIKLSLNKPVRLEADPSLKRPATLTEEVVRIRRARESNQEAVLLALCLK 404
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF VIIFSGTKQ+AHRLKI+FGL+ +KAAELHGNLTQAQRLEALELFRKQ VDFLIAT
Sbjct: 405 TFKRSVIIFSGTKQSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFRKQEVDFLIAT 464
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARG+DI+GVQTVIN+ACPRD+ +Y+HRVGRTARAGREGYAVTFVTD+DRSLLKAIAK
Sbjct: 465 DVAARGIDIVGVQTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAK 524
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
+AGS+LKSRIVAE+ + + +++IEQ+EDQ++ I++EER ER RKAEME KAENMIAHK
Sbjct: 525 KAGSQLKSRIVAEKPVAECAQLIEQLEDQISIIIREERVEREARKAEMEIAKAENMIAHK 584
Query: 421 EEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREK 480
+EI++RPKRTWF TE+EKKL V A K S+ +GK + V SA+QAEDL++KEK++RE EK
Sbjct: 585 DEIYSRPKRTWFATEREKKLLVAAAKESLGQGKSTSG-VISAKQAEDLRLKEKKRREHEK 643
Query: 481 NLPRKERRKLEAAREMLEDEDQVDKL-QGSGKDKKEKAGISMVDLAYRRAKAVKAKQKAL 539
+LPRK+RR+LEA REMLEDED+ D+ + S + KK K G S+VD AYR+AK++KA K
Sbjct: 644 DLPRKKRRRLEAQREMLEDEDEDDEEAKESDRGKKLKKGQSLVDAAYRKAKSLKAASKRG 703
Query: 540 DAGKIVKSNGKKSKHSSQESN---SRAKEMRELFHSDMSEKKQ----KRTGGIGKKPKHS 592
S GKK K++ Q S +R +EMRELF +DMSE KQ K+ K +
Sbjct: 704 PGA----SKGKKEKNARQYSEKTPNRHEEMRELFQNDMSEWKQGRSSKKNNNFAHKKSKA 759
Query: 593 FKSKSRYKRR 602
F SK+RYKRR
Sbjct: 760 FNSKARYKRR 769
>gi|414589947|tpg|DAA40518.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein,
partial [Zea mays]
Length = 786
Score = 870 bits (2249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/604 (72%), Positives = 518/604 (85%), Gaps = 8/604 (1%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ELNLSRPL+RACEALGY KPTPIQAACIPLALTGRDICGSAITGSGKTAAF+LP LERL
Sbjct: 186 LELNLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERL 245
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
L+RPKR+PAIRVLILTPTRELA Q+HSM+EK+AQFTDIRCCL+VGGLSTK+QE ALRSMP
Sbjct: 246 LFRPKRVPAIRVLILTPTRELAAQIHSMVEKLAQFTDIRCCLIVGGLSTKIQEVALRSMP 305
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIVVATPGR+IDHLRNS+SV L+DLAV+ILDEADRLLELGFSAEI EL+R+CPKRRQTML
Sbjct: 306 DIVVATPGRIIDHLRNSLSVGLEDLAVVILDEADRLLELGFSAEIQELIRMCPKRRQTML 365
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE++DEL+KLSL KP+RL ADPS KRP+TLTEEVVRIRR RE NQEAVLL+LC K
Sbjct: 366 FSATMTEEIDELVKLSLNKPVRLEADPSLKRPATLTEEVVRIRRARESNQEAVLLALCLK 425
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF VIIFSGTKQ+AHRLKI+FGL+ +KAAELHGNLTQAQRLEALELF+K+ VDFLIAT
Sbjct: 426 TFKRSVIIFSGTKQSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKKEVDFLIAT 485
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARG+DI+GVQTVIN+ACPRD+ +Y+HRVGRTARAGREGYAVTFVTD+DR LLKAIAK
Sbjct: 486 DVAARGIDIVGVQTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDDDRCLLKAIAK 545
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
+AGS+LKSRIVAE+ + + +++IEQ+E Q++ I++EER ER RKAEME KAENMIAHK
Sbjct: 546 KAGSQLKSRIVAEKPVAECARLIEQLEGQISIIIREERVEREARKAEMEIAKAENMIAHK 605
Query: 421 EEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREK 480
+EI++RPKRTWF TE+EKKL A K S++ GK + V SA++AEDL++KEKR+RE EK
Sbjct: 606 DEIYSRPKRTWFATEREKKLLAAAAKESLDHGKSTSG-VISAKKAEDLRLKEKRRREHEK 664
Query: 481 NLPRKERRKLEAAREMLEDEDQVDKLQGSGKDKKEKAGISMVDLAYRRAKAVKAKQKALD 540
NLPRK+RR+LEA REMLEDED +K + + + K+ G S+VD AYR+AK++KA K
Sbjct: 665 NLPRKKRRRLEAQREMLEDEDD-EKTKENDRGKQPMKGQSLVDAAYRKAKSLKAASKRAP 723
Query: 541 AGKIVKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIG-----KKPKHSFKS 595
+ K + +HS + N R +EMR+LF +DMSE KQ R+ KK ++SFKS
Sbjct: 724 GARKGKKEKNERQHSEKAPN-RHEEMRDLFQNDMSEWKQGRSSKKNNKFAPKKSRNSFKS 782
Query: 596 KSRY 599
K+RY
Sbjct: 783 KARY 786
>gi|143454043|sp|Q0INC5.2|RH28_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 28
gi|77555691|gb|ABA98487.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
gi|125579336|gb|EAZ20482.1| hypothetical protein OsJ_36091 [Oryza sativa Japonica Group]
gi|215706455|dbj|BAG93311.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 802
Score = 863 bits (2230), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/583 (75%), Positives = 514/583 (88%), Gaps = 3/583 (0%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ELNLSRPLLRACEALGY KPTPIQAACIPLALTGRDICGSAITGSGKTAAF+LP LERL
Sbjct: 197 LELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERL 256
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
L+RPKR+PAIRVLILTPTRELA QVHSMIEK+AQFTDIRCCL+VGGLSTK+QE ALRSMP
Sbjct: 257 LFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRSMP 316
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIVVATPGR+IDHLRNS+SV L+DLA+LILDEADRLLELGFSAEI EL+R+CP+RRQTML
Sbjct: 317 DIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSAEIQELIRMCPRRRQTML 376
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE+++EL+ LSL KP+RL ADPS KRP+TLTEEVVRIRR RE NQEAVLL+LC K
Sbjct: 377 FSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVVRIRRAREANQEAVLLALCLK 436
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF KVIIFSGTK +AHRLKI+FGL+ +KAAELHGNLTQAQRLEALELF+KQ VDFLIAT
Sbjct: 437 TFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDFLIAT 496
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARG+DI+GV+TVIN++CPRD +Y+HRVGRTARAGREGYAVTFVTD+DRSLLKAIAK
Sbjct: 497 DVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAK 556
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
+AGS+LKSRIVAE+ + + +K+IE++EDQ++ I+QEEREERILRKAEMEATKAENMIAHK
Sbjct: 557 KAGSQLKSRIVAEKPVAECAKLIEELEDQISTIIQEEREERILRKAEMEATKAENMIAHK 616
Query: 421 EEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREK 480
+EI++RPKRTWF TEKEKKL KA K S +GK S + V SAQQAEDL++KEK++REREK
Sbjct: 617 DEIYSRPKRTWFATEKEKKLLAKAAKESTSQGK-SNSGVISAQQAEDLRLKEKKRREREK 675
Query: 481 NLPRKERRKLEAAREMLEDEDQVDKLQGSGKDKKEKAGI-SMVDLAYRRAKAVKAKQKAL 539
NLPRK+RR+LEA REMLEDE + ++ K K++ S+VD+AYRRAK++KA K
Sbjct: 676 NLPRKKRRRLEAEREMLEDESEDEEEAKESKGGKKEKKGQSLVDVAYRRAKSMKASGKR- 734
Query: 540 DAGKIVKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRT 582
AG N KK+K S + +R +EM+ELF +DMSE KQ R+
Sbjct: 735 GAGTGKGKNDKKAKQHSGKGPTRQEEMQELFQNDMSEWKQGRS 777
>gi|115488568|ref|NP_001066771.1| Os12g0481100 [Oryza sativa Japonica Group]
gi|113649278|dbj|BAF29790.1| Os12g0481100, partial [Oryza sativa Japonica Group]
Length = 832
Score = 862 bits (2228), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/583 (75%), Positives = 514/583 (88%), Gaps = 3/583 (0%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ELNLSRPLLRACEALGY KPTPIQAACIPLALTGRDICGSAITGSGKTAAF+LP LERL
Sbjct: 227 LELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERL 286
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
L+RPKR+PAIRVLILTPTRELA QVHSMIEK+AQFTDIRCCL+VGGLSTK+QE ALRSMP
Sbjct: 287 LFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRSMP 346
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIVVATPGR+IDHLRNS+SV L+DLA+LILDEADRLLELGFSAEI EL+R+CP+RRQTML
Sbjct: 347 DIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSAEIQELIRMCPRRRQTML 406
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE+++EL+ LSL KP+RL ADPS KRP+TLTEEVVRIRR RE NQEAVLL+LC K
Sbjct: 407 FSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVVRIRRAREANQEAVLLALCLK 466
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF KVIIFSGTK +AHRLKI+FGL+ +KAAELHGNLTQAQRLEALELF+KQ VDFLIAT
Sbjct: 467 TFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDFLIAT 526
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARG+DI+GV+TVIN++CPRD +Y+HRVGRTARAGREGYAVTFVTD+DRSLLKAIAK
Sbjct: 527 DVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAK 586
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
+AGS+LKSRIVAE+ + + +K+IE++EDQ++ I+QEEREERILRKAEMEATKAENMIAHK
Sbjct: 587 KAGSQLKSRIVAEKPVAECAKLIEELEDQISTIIQEEREERILRKAEMEATKAENMIAHK 646
Query: 421 EEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREK 480
+EI++RPKRTWF TEKEKKL KA K S +GK S + V SAQQAEDL++KEK++REREK
Sbjct: 647 DEIYSRPKRTWFATEKEKKLLAKAAKESTSQGK-SNSGVISAQQAEDLRLKEKKRREREK 705
Query: 481 NLPRKERRKLEAAREMLEDEDQVDKLQGSGKDKKEKAGI-SMVDLAYRRAKAVKAKQKAL 539
NLPRK+RR+LEA REMLEDE + ++ K K++ S+VD+AYRRAK++KA K
Sbjct: 706 NLPRKKRRRLEAEREMLEDESEDEEEAKESKGGKKEKKGQSLVDVAYRRAKSMKASGKR- 764
Query: 540 DAGKIVKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRT 582
AG N KK+K S + +R +EM+ELF +DMSE KQ R+
Sbjct: 765 GAGTGKGKNDKKAKQHSGKGPTRQEEMQELFQNDMSEWKQGRS 807
>gi|218186850|gb|EEC69277.1| hypothetical protein OsI_38328 [Oryza sativa Indica Group]
Length = 802
Score = 860 bits (2221), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/583 (75%), Positives = 513/583 (87%), Gaps = 3/583 (0%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ELNLSRPLLRACEALGY KPTPIQAACIPLALTGRDICGSAITGSGKTAAF+LP LERL
Sbjct: 197 LELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERL 256
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
L+RPKR+PAIRVLILTPTRELA VHSMIEK+AQFTDIRCCL+VGGLSTK+QE ALRSMP
Sbjct: 257 LFRPKRVPAIRVLILTPTRELAAPVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRSMP 316
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIVVATPGR+IDHLRNS+SV L+DLA+LILDEADRLLELGFSAEI EL+R+CP+RRQTML
Sbjct: 317 DIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSAEIQELIRMCPRRRQTML 376
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE+++EL+ LSL KP+RL ADPS KRP+TLTEEVVRIRR RE NQEAVLL+LC K
Sbjct: 377 FSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVVRIRRAREANQEAVLLALCLK 436
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF KVIIFSGTK +AHRLKI+FGL+ +KAAELHGNLTQAQRLEALELF+KQ VDFLIAT
Sbjct: 437 TFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDFLIAT 496
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARG+DI+GV+TVIN++CPRD +Y+HRVGRTARAGREGYAVTFVTD+DRSLLKAIAK
Sbjct: 497 DVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAK 556
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
+AGS+LKSRIVAE+ + + +K+IE++EDQ++ I+QEEREERILRKAEMEATKAENMIAHK
Sbjct: 557 KAGSQLKSRIVAEKPVAECAKLIEELEDQISTIIQEEREERILRKAEMEATKAENMIAHK 616
Query: 421 EEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREK 480
+EI++RPKRTWF TEKEKKL KA K S +GK S + V SAQQAEDL++KEK++REREK
Sbjct: 617 DEIYSRPKRTWFATEKEKKLLAKAAKESTSQGK-SNSGVISAQQAEDLRLKEKKRREREK 675
Query: 481 NLPRKERRKLEAAREMLEDEDQVDKLQGSGKDKKEKAGI-SMVDLAYRRAKAVKAKQKAL 539
NLPRK+RR+LEA REMLEDE + ++ K K++ S+VD+AYRRAK++KA K
Sbjct: 676 NLPRKKRRRLEAEREMLEDESEDEEEAKESKGGKKEKKGQSLVDVAYRRAKSMKASGKR- 734
Query: 540 DAGKIVKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRT 582
AG N KK+K S + +R +EM+ELF +DMSE KQ R+
Sbjct: 735 GAGTGKGKNDKKAKQHSGKGPTRQEEMQELFQNDMSEWKQGRS 777
>gi|357152629|ref|XP_003576183.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like isoform 2
[Brachypodium distachyon]
Length = 770
Score = 847 bits (2189), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/611 (73%), Positives = 520/611 (85%), Gaps = 18/611 (2%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ELN+SRPLLRACEALGY KPTPIQAACIPLALTGRDICGSAITGSGKTAAF+LP LERL
Sbjct: 168 LELNISRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERL 227
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
L+RPKR+PAIRVLILTPTRELA QVHSMIEK+AQFTDIRCCL+VGGL TK+QE ALRS P
Sbjct: 228 LFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLPTKVQEVALRSNP 287
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIVVATPGR+IDHLRNS+SV L+DLA+LILDEADRLLELGFS EI+EL+R+CPKRRQTML
Sbjct: 288 DIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSVEINELIRMCPKRRQTML 347
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE++DEL+KLSL KP+RL ADPS KRP+TLTEEVVRIRR RE NQEAVLL+LC K
Sbjct: 348 FSATMTEEIDELVKLSLNKPVRLEADPSLKRPATLTEEVVRIRRSREANQEAVLLALCLK 407
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF +VIIFSGTK +AHRLKI+FGL+ +KAAELHGNLTQAQRLEALELF+KQ VD LIAT
Sbjct: 408 TFKERVIIFSGTKHSAHRLKIMFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDILIAT 467
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARG+DI+GV+TVIN+ACPRD+ +Y+HRVGRTARAGREGYAVTFVTD+DRSLLKAIAK
Sbjct: 468 DIAARGIDIVGVRTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAK 527
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
+AGS+LKSRIVAE+ + +K+I+Q+E+Q++ I+QEEREE LRKAEMEATKAENMIAHK
Sbjct: 528 KAGSQLKSRIVAEKPVADCAKLIDQLENQISNIIQEEREEMALRKAEMEATKAENMIAHK 587
Query: 421 EEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREK 480
+EI++RPKRTWF TEKEKKL KA K S+ + K S V SAQ AEDL++KEKR+REREK
Sbjct: 588 DEIYSRPKRTWFATEKEKKLLAKAAKESLGQVKSSSG-VVSAQDAEDLRLKEKRRREREK 646
Query: 481 NLPRKERRKLEAAREMLEDEDQVDKLQGSGK-DKKEKAGISMVDLAYRRAKAVKAKQKAL 539
NLPRK+RRKLEA REMLEDE + ++ K KK K S+VD+AYR+AK++KA K
Sbjct: 647 NLPRKKRRKLEAQREMLEDEKEDEEETQESKGGKKAKNSQSVVDVAYRKAKSLKATGKKD 706
Query: 540 DAGKIVKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHSF------ 593
GK +K+K S++ +R +EM ELF SDMSE KQ R+ KK SF
Sbjct: 707 GKGK-----NEKAKQPSEKGQTRQEEMHELFQSDMSEWKQGRS---LKKKDSSFAKKSKN 758
Query: 594 --KSKSRYKRR 602
KSKSRYKRR
Sbjct: 759 SFKSKSRYKRR 769
>gi|357152627|ref|XP_003576182.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like isoform 1
[Brachypodium distachyon]
Length = 780
Score = 847 bits (2188), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/611 (73%), Positives = 520/611 (85%), Gaps = 18/611 (2%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ELN+SRPLLRACEALGY KPTPIQAACIPLALTGRDICGSAITGSGKTAAF+LP LERL
Sbjct: 178 LELNISRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERL 237
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
L+RPKR+PAIRVLILTPTRELA QVHSMIEK+AQFTDIRCCL+VGGL TK+QE ALRS P
Sbjct: 238 LFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLPTKVQEVALRSNP 297
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIVVATPGR+IDHLRNS+SV L+DLA+LILDEADRLLELGFS EI+EL+R+CPKRRQTML
Sbjct: 298 DIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSVEINELIRMCPKRRQTML 357
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE++DEL+KLSL KP+RL ADPS KRP+TLTEEVVRIRR RE NQEAVLL+LC K
Sbjct: 358 FSATMTEEIDELVKLSLNKPVRLEADPSLKRPATLTEEVVRIRRSREANQEAVLLALCLK 417
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF +VIIFSGTK +AHRLKI+FGL+ +KAAELHGNLTQAQRLEALELF+KQ VD LIAT
Sbjct: 418 TFKERVIIFSGTKHSAHRLKIMFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDILIAT 477
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARG+DI+GV+TVIN+ACPRD+ +Y+HRVGRTARAGREGYAVTFVTD+DRSLLKAIAK
Sbjct: 478 DIAARGIDIVGVRTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAK 537
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
+AGS+LKSRIVAE+ + +K+I+Q+E+Q++ I+QEEREE LRKAEMEATKAENMIAHK
Sbjct: 538 KAGSQLKSRIVAEKPVADCAKLIDQLENQISNIIQEEREEMALRKAEMEATKAENMIAHK 597
Query: 421 EEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREK 480
+EI++RPKRTWF TEKEKKL KA K S+ + K S V SAQ AEDL++KEKR+REREK
Sbjct: 598 DEIYSRPKRTWFATEKEKKLLAKAAKESLGQVKSSSG-VVSAQDAEDLRLKEKRRREREK 656
Query: 481 NLPRKERRKLEAAREMLEDEDQVDKLQGSGK-DKKEKAGISMVDLAYRRAKAVKAKQKAL 539
NLPRK+RRKLEA REMLEDE + ++ K KK K S+VD+AYR+AK++KA K
Sbjct: 657 NLPRKKRRKLEAQREMLEDEKEDEEETQESKGGKKAKNSQSVVDVAYRKAKSLKATGKKD 716
Query: 540 DAGKIVKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHSF------ 593
GK +K+K S++ +R +EM ELF SDMSE KQ R+ KK SF
Sbjct: 717 GKGK-----NEKAKQPSEKGQTRQEEMHELFQSDMSEWKQGRS---LKKKDSSFAKKSKN 768
Query: 594 --KSKSRYKRR 602
KSKSRYKRR
Sbjct: 769 SFKSKSRYKRR 779
>gi|227206264|dbj|BAH57187.1| AT4G16630 [Arabidopsis thaliana]
Length = 617
Score = 823 bits (2125), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/497 (81%), Positives = 451/497 (90%), Gaps = 2/497 (0%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
MELNLSRPLLRACE LGY KPTPIQAACIPLALTGRD+C SAITGSGKTAAFALPTLERL
Sbjct: 108 MELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERL 167
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
L+RPKR+ A RVLILTPTRELAVQ+HSMI+ +AQFTDI+C L+VGGLS + QE LRSMP
Sbjct: 168 LFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMP 227
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL+ GF+ EI ELVRLCPKRRQTML
Sbjct: 228 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTML 287
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE+V EL+KLSL KPLRLSADPSA+RP LTEEVVRIRR RE NQEAVLLSLC++
Sbjct: 288 FSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLCTR 347
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF SKVIIFSGTKQAAHRLKILFGLA LKAAELHGNLTQAQRL++LELFRKQ VDFLIAT
Sbjct: 348 TFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIAT 407
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDIIGVQTVINYACPR++ SYVHRVGRTARAGREGYAVTFVTD+DRSLLK IAK
Sbjct: 408 DVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAK 467
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
+ GSKLKSR++ EQSI KWS+II++MEDQ +A++ ER+ER LRKAEME KAENM+ H+
Sbjct: 468 KVGSKLKSRVIPEQSIVKWSQIIDEMEDQYSAVISAERDERALRKAEMEFAKAENMLEHR 527
Query: 421 EEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREK 480
+EI+ARPKRTWF+TEKEKKL +A+K S G +G E+ SA +AEDLK+KEKRKREREK
Sbjct: 528 DEIYARPKRTWFMTEKEKKLVAQAEKDS--AGNPAGGELVSADRAEDLKMKEKRKREREK 585
Query: 481 NLPRKERRKLEAAREML 497
NLPRK+RRKLEAAREML
Sbjct: 586 NLPRKKRRKLEAAREML 602
>gi|222423183|dbj|BAH19569.1| AT4G16630 [Arabidopsis thaliana]
Length = 686
Score = 822 bits (2124), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/497 (81%), Positives = 451/497 (90%), Gaps = 2/497 (0%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
MELNLSRPLLRACE LGY KPTPIQAACIPLALTGRD+C SAITGSGKTAAFALPTLERL
Sbjct: 170 MELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERL 229
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
L+RPKR+ A RVLILTPTRELAVQ+HSMI+ +AQFTDI+C L+VGGLS + QE LRSMP
Sbjct: 230 LFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMP 289
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL+ GF+ EI ELVRLCPKRRQTML
Sbjct: 290 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTML 349
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE+V EL+KLSL KPLRLSADPSA+RP LTEEVVRIRR RE NQEAVLLSLC++
Sbjct: 350 FSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLCTR 409
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF SKVIIFSGTKQAAHRLKILFGLA LKAAELHGNLTQAQRL++LELFRKQ VDFLIAT
Sbjct: 410 TFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIAT 469
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDIIGVQTVINYACPR++ SYVHRVGRTARAGREGYAVTFVTD+DRSLLK IAK
Sbjct: 470 DVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAK 529
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
+ GSKLKSR++ EQSI KWS+II++MEDQ +A++ ER+ER LRKAEME KAENM+ H+
Sbjct: 530 KVGSKLKSRVIPEQSIVKWSQIIDEMEDQYSAVISAERDERALRKAEMEFAKAENMLEHR 589
Query: 421 EEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREK 480
+EI+ARPKRTWF+TEKEKKL +A+K S G +G E+ SA +AEDLK+KEKRKREREK
Sbjct: 590 DEIYARPKRTWFMTEKEKKLVAQAEKDS--AGNPAGGELVSADRAEDLKMKEKRKREREK 647
Query: 481 NLPRKERRKLEAAREML 497
NLPRK+RRKLEAAREML
Sbjct: 648 NLPRKKRRKLEAAREML 664
>gi|242045284|ref|XP_002460513.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
gi|241923890|gb|EER97034.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
Length = 760
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/609 (69%), Positives = 501/609 (82%), Gaps = 44/609 (7%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ELNLSRPL+RACEALGY KPTPIQAACIPLALTGRDICGSAITGSGKTAAF+LP LERL
Sbjct: 188 LELNLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERL 247
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
L+RPKR+PAIRVLILTPTRELA QVHSMIEK+AQFTDIRCCL+VGGLSTK+QE ALRSMP
Sbjct: 248 LFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRSMP 307
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIVVATPGR+IDHLRNS+SV L+DLAV+ILDEADRLLELGFSAEI EL+R+CPKRRQTML
Sbjct: 308 DIVVATPGRIIDHLRNSLSVGLEDLAVVILDEADRLLELGFSAEIQELIRMCPKRRQTML 367
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE++DELIKLSL KP+RL ADPS KRP+TLTEEVVRIRR RE NQEAVLL+LC K
Sbjct: 368 FSATMTEEIDELIKLSLNKPVRLEADPSLKRPATLTEEVVRIRRARESNQEAVLLALCLK 427
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF VIIFSGTKQ+AHRLKI+FGL+ +KAAELHGNLTQAQRLEALELF+KQ VDFLIAT
Sbjct: 428 TFKRSVIIFSGTKQSAHRLKIVFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDFLIAT 487
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARG+DI+GV+TVIN+ACPRD+ +Y+HRVGRTARAGREGYAVTFVTD+DRSLLKAIAK
Sbjct: 488 DVAARGIDIVGVRTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAK 547
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
+AGS+LKSRIVAE+ + + +++IEQ+E Q++ I++EER ER RKAEME
Sbjct: 548 KAGSQLKSRIVAEKPVAECAQLIEQLEGQISIIIREERVEREARKAEMEIA--------- 598
Query: 421 EEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREK 480
K S+++GK S + V SA+QAEDL++KEK++RE EK
Sbjct: 599 -------------------------KESLDQGK-STSGVISAKQAEDLRLKEKKRREHEK 632
Query: 481 NLPRKERRKLEAAREMLEDEDQVDKL-QGSGKDKKEKAGISMVDLAYRRAKAVKAKQK-A 538
NLPRK+RR+LEA REMLEDED+ D+ + + + KK K G S+VD AYR+AK++KA K
Sbjct: 633 NLPRKKRRRLEAQREMLEDEDEDDEEAKENDRGKKPKKGQSLVDAAYRKAKSLKAASKRG 692
Query: 539 LDAGKIVKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIG-----KKPKHSF 593
AGK N K ++ S+++ SR +EMRELF +DMSE KQ R+ KK K++F
Sbjct: 693 PGAGK--GKNEKNARQHSEKTPSRHEEMRELFENDMSEWKQGRSSKKNNNFAHKKSKNAF 750
Query: 594 KSKSRYKRR 602
KSK+RYKRR
Sbjct: 751 KSKARYKRR 759
>gi|302792278|ref|XP_002977905.1| hypothetical protein SELMODRAFT_107914 [Selaginella moellendorffii]
gi|300154608|gb|EFJ21243.1| hypothetical protein SELMODRAFT_107914 [Selaginella moellendorffii]
Length = 741
Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/613 (64%), Positives = 477/613 (77%), Gaps = 24/613 (3%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ELN+SRPLLRAC+ALGY +PTPIQAACIPLAL GRDICGSA+TGSGKTAAFALP LERL
Sbjct: 118 IELNVSRPLLRACDALGYRQPTPIQAACIPLALAGRDICGSAVTGSGKTAAFALPILERL 177
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
L+RP+RIPAIRVLI+TPTRELAVQ+HSMIEK+AQFTDIRCCLVVGGLS+K+QE ALR+ P
Sbjct: 178 LFRPRRIPAIRVLIITPTRELAVQLHSMIEKLAQFTDIRCCLVVGGLSSKVQEVALRTHP 237
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIVVATPGRMIDHLRN+ SV L++LA+L+LDEADRLLELGF EIHELV+LCP RRQTML
Sbjct: 238 DIVVATPGRMIDHLRNTQSVGLEELAILVLDEADRLLELGFREEIHELVKLCPSRRQTML 297
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T++V ELIKLSL P+RLSADPS +RPSTLTEEV+RIR E ++EA++LSLCS+
Sbjct: 298 FSATMTDEVSELIKLSLKSPVRLSADPSTERPSTLTEEVIRIRAGHEEDKEAIVLSLCSR 357
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+ SK IIFSGTK AHRLKILFGL+ LK+AELHGNLTQAQRLEALE FRKQ VDFLIAT
Sbjct: 358 SLKSKTIIFSGTKVEAHRLKILFGLSGLKSAELHGNLTQAQRLEALEAFRKQEVDFLIAT 417
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDIIGV++VIN CP+++ +YVHRVGRTARAGR G +VT +T+ DR LLKA+AK
Sbjct: 418 DVAARGLDIIGVESVINLECPKEIKTYVHRVGRTARAGRHGRSVTLMTEQDRLLLKAVAK 477
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
RAGSKL+ R+VA SI W + IE+ME+ + ILQ+EREE+ LRKAEMEA KA+NM+ ++
Sbjct: 478 RAGSKLQKRVVAATSIASWRERIEKMEEDLVQILQQEREEKFLRKAEMEANKAQNMMDYE 537
Query: 421 EEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREK 480
EIFARPK+TWF ++++K K AS + S + E+L+ KEKRK E EK
Sbjct: 538 AEIFARPKKTWFQSQQDKTRIAKVSPASY--------KAISVDEGEELQKKEKRKAETEK 589
Query: 481 NLPRKERRKLEAAREML-----EDEDQVDKLQG--SGKDKKEKAGISMVDLAYRRAKAVK 533
LPRK+RR+LEAARE EDE+Q K++G GK K G S+VD+ YRRAKAVK
Sbjct: 590 ALPRKKRRRLEAARETAEEGANEDENQHRKVRGRERGKKNKNNPGTSLVDIGYRRAKAVK 649
Query: 534 AKQKALDAGKIVKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKP---- 589
A +KA G+ S H+ ++ + E E+ S E R KKP
Sbjct: 650 AAEKARQEGRFTPRK-TSSDHTKRKKKKKDAE-DEMVRSSKPEAGASRRDATNKKPKRKP 707
Query: 590 ---KHSFKSKSRY 599
K SFKSK+RY
Sbjct: 708 GVSKRSFKSKARY 720
>gi|168010159|ref|XP_001757772.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691048|gb|EDQ77412.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 753
Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/628 (64%), Positives = 483/628 (76%), Gaps = 38/628 (6%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNLSRPL+RACE LGY +PTPIQAACIPLALTGRDICGSA+TGSGKT AFALP LERLL
Sbjct: 132 ELNLSRPLIRACETLGYREPTPIQAACIPLALTGRDICGSAVTGSGKTGAFALPMLERLL 191
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
YRP+RIPAIR LILTPTRELAVQVHSM++K+AQFTD+ +VVGGLS+K+QE ALR+ PD
Sbjct: 192 YRPRRIPAIRCLILTPTRELAVQVHSMVQKLAQFTDVTSAIVVGGLSSKVQEVALRARPD 251
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IVVATPGRM+DHL+NS+SV L+DL++L+LDEADRLLELGF+ E+HELVR CPKRRQTMLF
Sbjct: 252 IVVATPGRMLDHLQNSLSVGLEDLSILVLDEADRLLELGFTQEVHELVRQCPKRRQTMLF 311
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+TE+V LI LSL P+RLSADPS KRP +L+EEVV+IR E ++EAVLL+LC++T
Sbjct: 312 SATMTEEVSNLINLSLNSPVRLSADPSTKRPVSLSEEVVKIRPALENDKEAVLLALCTRT 371
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F KVIIFSG K AHRLKILFGLA LKAAELHGNLTQA RL+ALE FRKQ VDFLIATD
Sbjct: 372 FKEKVIIFSGMKVEAHRLKILFGLAGLKAAELHGNLTQAMRLDALESFRKQEVDFLIATD 431
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI+GV+TVIN+ CP D+T YVHRVGRTARAGR+G AVTFVT+ +RSLLKAIAK+
Sbjct: 432 VAARGLDIVGVETVINFHCPSDITVYVHRVGRTARAGRKGCAVTFVTERERSLLKAIAKK 491
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 421
AGS+L++R VA SI W IE+MED V ++Q ER E+ LRKAEME KA+NM+ H++
Sbjct: 492 AGSQLQNRQVAPTSIYNWRSKIEEMEDGVREVMQAERYEKALRKAEMEVNKAQNMMDHEK 551
Query: 422 EIFARPKRTWFVTEKEKKLAVKADKASIE-KGKGSGNEVTSAQQAEDLKIKEKRKREREK 480
EIF+RPKR WF++ KEKK + A KA E KG+ + + S ++A++ K K+KRKR+REK
Sbjct: 552 EIFSRPKREWFLSTKEKKTTIAAAKARKEGKGEKAPAAMISVEEADEAKRKDKRKRDREK 611
Query: 481 NLPRKERRKLEAAREMLEDEDQVDKLQGSGKD---------------KKEKAG-ISMVDL 524
N+ RK+RRKLEA RE ED D G D +EK G S+VDL
Sbjct: 612 NMTRKQRRKLEAEREDAEDAD-----DGPDSDADVEMKTMKGKKGKSSEEKGGKTSLVDL 666
Query: 525 AYRRAKAVKAKQKALDAGKI-VKSNGKKSKHSSQESNSRAKEMRELFHSDMSE------- 576
AYRRAKA K+ + + AGKI + K SK + Q++ SR E+ ELF SD +
Sbjct: 667 AYRRAKAAKSVDRLVKAGKIGPQKKLKGSKTTDQKTKSRKAEVEELFESDFGDDKRKKGK 726
Query: 577 -----KKQKRTGGIGKKPKHSFKSKSRY 599
KK R G+ K+ SFKSKSRY
Sbjct: 727 KEFQPKKPTRKPGVSKR---SFKSKSRY 751
>gi|302795308|ref|XP_002979417.1| hypothetical protein SELMODRAFT_110816 [Selaginella moellendorffii]
gi|300152665|gb|EFJ19306.1| hypothetical protein SELMODRAFT_110816 [Selaginella moellendorffii]
Length = 749
Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/613 (64%), Positives = 475/613 (77%), Gaps = 18/613 (2%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ELN+SRPLLRAC+ALGY +PTPIQAACIPLAL GRDICGSA+TGSGKTAAFALP LERL
Sbjct: 120 IELNVSRPLLRACDALGYRQPTPIQAACIPLALAGRDICGSAVTGSGKTAAFALPILERL 179
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
L+RP+RIPAIRVLI+TPTRELAVQ+HSMIEK+AQFTDIRC LVVGGLS+K+QE ALR+ P
Sbjct: 180 LFRPRRIPAIRVLIITPTRELAVQLHSMIEKLAQFTDIRCSLVVGGLSSKVQEVALRTHP 239
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIVVATPGRMIDHLRN+ SV L++LA+L+LDEADRLLELGF EIHELV+LCP RRQTML
Sbjct: 240 DIVVATPGRMIDHLRNTQSVGLEELAILVLDEADRLLELGFREEIHELVKLCPSRRQTML 299
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T++V ELIKLSL P+RLSADPS +RPSTLTEEV+RIR E ++EA++LSLCS+
Sbjct: 300 FSATMTDEVSELIKLSLKSPVRLSADPSTERPSTLTEEVIRIRAGHEGDKEAIVLSLCSR 359
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+ SK IIFSGTK AHRLKILFGL+ LK+AELHGNLTQAQRLEALE FRKQ VDFLIAT
Sbjct: 360 SLKSKTIIFSGTKVEAHRLKILFGLSGLKSAELHGNLTQAQRLEALEAFRKQEVDFLIAT 419
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDIIGV++VIN CP+++ +YVHRVGRTARAGR G +VT +T+ DR LLKA+AK
Sbjct: 420 DVAARGLDIIGVESVINLECPKEIKTYVHRVGRTARAGRHGRSVTLMTEQDRLLLKAVAK 479
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
RAGSKL+ R+VA SI W + IE+ME+ + ILQ+EREE+ LRKAEMEA KA+NM+ ++
Sbjct: 480 RAGSKLQKRVVAATSIASWRERIEKMEEDLVQILQQEREEKFLRKAEMEANKAQNMMDYE 539
Query: 421 EEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREK 480
EIFARPK+TWF ++++K K AS G + S + E+L+ KEKRK E EK
Sbjct: 540 AEIFARPKKTWFQSQQDKTRIAKVSPASY--GPALKKKAISVDEGEELQKKEKRKAETEK 597
Query: 481 NLPRKERRKLEAAREML-----EDEDQVDKLQG--SGKDKKEKAGISMVDLAYRRAKAVK 533
LPRK+RR+LEAARE EDE+Q K++G GK K G S+VD+ YRRAKAVK
Sbjct: 598 ALPRKKRRRLEAARETAEEGADEDENQHRKVRGRERGKKNKNNPGTSLVDIGYRRAKAVK 657
Query: 534 AKQKALDAGKIVKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKP---- 589
A +KA G+ S ++ ++ E+ S E R K+P
Sbjct: 658 AAEKARQEGRFTPSKKSSDDRKRKKKKKDPED--EMVRSSKPEAGASRRDATNKRPKRKP 715
Query: 590 ---KHSFKSKSRY 599
K SFKSK+RY
Sbjct: 716 GVSKRSFKSKARY 728
>gi|2245018|emb|CAB10438.1| RNA helicase like protein [Arabidopsis thaliana]
gi|7268413|emb|CAB78705.1| RNA helicase like protein [Arabidopsis thaliana]
Length = 683
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/526 (66%), Positives = 395/526 (75%), Gaps = 66/526 (12%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGK------------ 48
MELNLSRPLLRACE LGY KPTPIQ IP RD+C SAITGSGK
Sbjct: 170 MELNLSRPLLRACETLGYKKPTPIQVQFIPQEW--RDLCASAITGSGKVSTRLMVLCNTE 227
Query: 49 --------TAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 100
TAAFALPTLERLL+RPKR+ A RVLILTPTRELAVQ+HSMI+ +AQFTDI+C
Sbjct: 228 ILFRYLTNTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKC 287
Query: 101 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 160
L+VGGLS + QE LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL+ G
Sbjct: 288 GLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTG 347
Query: 161 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV 220
F+ EI ELVRLCPKRRQTMLFSAT+TE+V EL+KLSL KPLRLSADPSA+RP LTEE +
Sbjct: 348 FATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEYL 407
Query: 221 RIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQA 280
R + C+ SGTKQAAHRLKILFGLA LKAAELHGNLTQA
Sbjct: 408 R----------EFFVPSCA----------SGTKQAAHRLKILFGLAGLKAAELHGNLTQA 447
Query: 281 QRLE----------ALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHR 330
QRL+ +LELFRKQ VDFLIATDVAARGLDIIGVQTVINYACPR++ SYVHR
Sbjct: 448 QRLDVRNLGTSALFSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHR 507
Query: 331 VGRTARAGREGYAVTFVTDNDRSLLKAI-----------AKRAGSKLKSRIVAEQSITKW 379
VGRTARAGREGYAVTFVTD+DRSLLK I AK+ GSKLKSR++ EQSI KW
Sbjct: 508 VGRTARAGREGYAVTFVTDSDRSLLKVITFESTLFLCLKAKKVGSKLKSRVIPEQSIVKW 567
Query: 380 SKIIEQMEDQVAAILQEER-EERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEK 438
S+II++MEDQ +A++ ER + + AENM+ H++EI+ARPKRTWF+TEKEK
Sbjct: 568 SQIIDEMEDQYSAVISAERFHSHSSKNYGIPGELAENMLEHRDEIYARPKRTWFMTEKEK 627
Query: 439 KLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPR 484
KL +A+K S G +G E+ SA +AEDLK+KEKRKRERE L R
Sbjct: 628 KLVAQAEKDS--AGNPAGGELVSADRAEDLKMKEKRKREREVCLSR 671
>gi|302142686|emb|CBI19889.3| unnamed protein product [Vitis vinifera]
Length = 875
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/439 (81%), Positives = 394/439 (89%), Gaps = 3/439 (0%)
Query: 167 ELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR 226
E VRLCPKRRQTMLFSAT+TE+VDEL+KLS+TKP+RL+ADPS KRP+TLTEEVVRIRRMR
Sbjct: 437 EFVRLCPKRRQTMLFSATMTEEVDELVKLSMTKPMRLAADPSTKRPATLTEEVVRIRRMR 496
Query: 227 EVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEAL 286
EVNQEAVLL+LCSKTFT+K IIFSGTKQAAHRLKILFGLA KAAELHGNLTQ QRL+AL
Sbjct: 497 EVNQEAVLLALCSKTFTAKAIIFSGTKQAAHRLKILFGLAGFKAAELHGNLTQVQRLDAL 556
Query: 287 ELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 346
ELFRKQ VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF
Sbjct: 557 ELFRKQQVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 616
Query: 347 VTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKA 406
VTDNDRSLLK+I KRAGSKL+SRIVAEQSI KWS +IEQMEDQVAAILQEEREERILRKA
Sbjct: 617 VTDNDRSLLKSIVKRAGSKLRSRIVAEQSIIKWSHMIEQMEDQVAAILQEEREERILRKA 676
Query: 407 EMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAE 466
EMEATKAENMIAHK++I++RPKRTWF TEKEKK KA K S+EK GSGN V SAQQAE
Sbjct: 677 EMEATKAENMIAHKDDIYSRPKRTWFATEKEKKSVAKAAKDSLEKENGSGNNVISAQQAE 736
Query: 467 DLKIKEKRKREREKNLPRKERRKLEAAREMLEDEDQVDKLQGSGK-DKKEKAGISMVDLA 525
DLK+KEKRKREREKNLPRK+RRKLEAARE LEDE+Q+ KL+ G+ +KKEKAGIS+V +
Sbjct: 737 DLKMKEKRKREREKNLPRKKRRKLEAARERLEDENQIHKLKEGGRENKKEKAGISLVGIG 796
Query: 526 YRRAKAVKAKQKALDAGKIVKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRT--G 583
YRRAKAVKA +KA DAGKI + KKS+ SQ + SR +EM+ELF SDMSE+KQKR+ G
Sbjct: 797 YRRAKAVKAVKKAQDAGKIGRKANKKSERPSQTNQSRTEEMQELFQSDMSERKQKRSIRG 856
Query: 584 GIGKKPKHSFKSKSRYKRR 602
KK K+SFKSKSRYKR+
Sbjct: 857 AGKKKSKNSFKSKSRYKRK 875
Score = 334 bits (857), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 154/172 (89%), Positives = 168/172 (97%), Gaps = 1/172 (0%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ELNLSRPLLRACEALGY+KPTPIQAACIP+ALTGRDICGSAITGSGKTAAF+LPTLERL
Sbjct: 128 LELNLSRPLLRACEALGYTKPTPIQAACIPIALTGRDICGSAITGSGKTAAFSLPTLERL 187
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
L+RPKR+ AIRVL+LTPTRELAVQVHSM+EK+AQFTDIRCCL+VGGLS+KMQETALRSMP
Sbjct: 188 LFRPKRVQAIRVLVLTPTRELAVQVHSMMEKLAQFTDIRCCLIVGGLSSKMQETALRSMP 247
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172
D+VVATPGRMIDHLRNSMSVDL+DLAVLILDEADRLLELGF+AEI EL R C
Sbjct: 248 DVVVATPGRMIDHLRNSMSVDLEDLAVLILDEADRLLELGFNAEIREL-RCC 298
>gi|255079330|ref|XP_002503245.1| predicted protein [Micromonas sp. RCC299]
gi|226518511|gb|ACO64503.1| predicted protein [Micromonas sp. RCC299]
Length = 605
Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust.
Identities = 273/451 (60%), Positives = 343/451 (76%), Gaps = 2/451 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNLSRPL++AC ALGY+ PTPIQAA +PLALTGRDICG A+TGSGKTAAF LP LER+L
Sbjct: 154 ELNLSRPLVKACGALGYASPTPIQAAVVPLALTGRDICGRAVTGSGKTAAFMLPCLERML 213
Query: 62 YR-PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+R PK + A VL+L PTRELAVQVH M E++AQFT +R LVVGGLS +Q T+LRS P
Sbjct: 214 HRGPKPVAATHVLVLVPTRELAVQVHQMTERLAQFTSVRAALVVGGLSANVQATSLRSRP 273
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
++VVATPGR+IDH+RN+ SV L+DLA L+LDEADRLLE+GF EI E+VR CPKRRQTML
Sbjct: 274 EVVVATPGRLIDHVRNTHSVGLEDLATLVLDEADRLLEMGFLEEIREIVRHCPKRRQTML 333
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSATLT V+EL + S+ P RLSAD P TLTEEV+R+R +EA LL++ ++
Sbjct: 334 FSATLTSGVEELAEFSMKNPARLSADQIGTTPGTLTEEVLRLRPGAAAMKEAHLLAIVAR 393
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TFT + IIFS TKQ AHRLKI+ G+ LKA ELHG+LTQ QRL ALE FR ++AT
Sbjct: 394 TFTKRCIIFSRTKQQAHRLKIIMGIHGLKACELHGDLTQTQRLAALEEFRTGEATHMVAT 453
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI GV V++Y PR L SY+HRVGRTARAGR+G A+TF+ ++DR L+KA++K
Sbjct: 454 DVAARGLDIAGVDAVVSYDAPRTLASYLHRVGRTARAGRKGTALTFMEESDRKLIKAVSK 513
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
R GSKL +R + + + IE M + + + EER E+ L +AEMEA KAEN++ H+
Sbjct: 514 R-GSKLVARSLPTHVVEDFHAKIEGMGEAIKEVEMEERAEKHLARAEMEAIKAENLMEHQ 572
Query: 421 EEIFARPKRTWFVTEKEKKLAVKADKASIEK 451
+EI +RP++TWF +E+EKKL KA + E+
Sbjct: 573 KEIHSRPQKTWFQSEREKKLGQKASLKAAER 603
>gi|302833349|ref|XP_002948238.1| hypothetical protein VOLCADRAFT_80160 [Volvox carteri f.
nagariensis]
gi|300266458|gb|EFJ50645.1| hypothetical protein VOLCADRAFT_80160 [Volvox carteri f.
nagariensis]
Length = 836
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 280/450 (62%), Positives = 348/450 (77%), Gaps = 12/450 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+LNLSRPLL+A EALGY PTPIQAACIPLAL GRDICGSA+TGSGKTAAFALP LERLL
Sbjct: 178 DLNLSRPLLKAVEALGYKTPTPIQAACIPLALAGRDICGSAVTGSGKTAAFALPFLERLL 237
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+RP+ + A VL+LTPTRELAVQ+HSMIEK+AQFTD+ L+VGGLS +Q LR +P+
Sbjct: 238 HRPRGLAATYVLVLTPTRELAVQIHSMIEKLAQFTDVTVALIVGGLSLSVQAATLRKLPE 297
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+VVATPGR+IDHLRNS SV L+DLAVL+LDEADRLLE+GF E+ E+VR PK+RQTMLF
Sbjct: 298 VVVATPGRLIDHLRNSQSVGLEDLAVLVLDEADRLLEMGFRDEVMEVVRCAPKKRQTMLF 357
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSK 240
SAT ++ V +L+ LSL +P+RL+AD + P LT+E+VR++ +EAV ++LCS+
Sbjct: 358 SATFSDQVRDLVSLSLKQPVRLAADAARAAPKLLTQEIVRLKGPAAAATKEAVCVALCSR 417
Query: 241 TFTS-KVIIFSGTKQAAHRLKILFGLAAL-KAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+F+S + I+F TKQ AHRLKILFGLA L AAELHGN++Q RLE+LE FR+ +L+
Sbjct: 418 SFSSGRTIVFCSTKQRAHRLKILFGLAKLPPAAELHGNMSQTARLESLESFRRGDTAYLL 477
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATDVAARGLDI GV+ V+NY PR L +Y+HR+GRTARAG G AVT V D DR LLK +
Sbjct: 478 ATDVAARGLDIQGVEVVVNYDAPRKLETYLHRIGRTARAGAAGVAVTLVEDGDRPLLKEL 537
Query: 359 AKRAGSK---------LKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 409
+R G L+ R+V Q++ +W IE+ME VAAIL EER+E LRKAEME
Sbjct: 538 TRRVGGAGGGGGGGVTLRQRLVPPQAVAQWQGRIERMESDVAAILAEERQEADLRKAEME 597
Query: 410 ATKAENMIAHKEEIFARPKRTWFVTEKEKK 439
A KA NM+ H+EEI ARPKRTWFV++++KK
Sbjct: 598 ANKASNMLEHEEEIMARPKRTWFVSDRQKK 627
>gi|303283946|ref|XP_003061264.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457615|gb|EEH54914.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 809
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 283/493 (57%), Positives = 350/493 (70%), Gaps = 13/493 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+LNLSR L+RAC ALGY PTPIQAA +PLALTGRDICG A+TGSGKTAAF LP LER+L
Sbjct: 182 DLNLSRQLIRACTALGYDVPTPIQAAVVPLALTGRDICGRAVTGSGKTAAFMLPLLERML 241
Query: 62 YRPKRIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+R R A VL+L PTRELAVQVH M ++AQFT IR LVVGGLS Q LR+ P
Sbjct: 242 HRGARAAAATHVLVLVPTRELAVQVHQMTMRLAQFTSIRAALVVGGLSANTQAAELRTRP 301
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
+IVVATPGR+IDH+RN+ SV L+DLA L+LDEADRLLE+GF EI E+VR CP RRQTML
Sbjct: 302 EIVVATPGRLIDHVRNTHSVGLEDLAALVLDEADRLLEMGFLEEIREIVRHCPTRRQTML 361
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSATLT V EL + S+ P RLSAD P TLTEEV+R+R +EA L++L ++
Sbjct: 362 FSATLTSGVQELAEFSMKHPARLSADQIGTTPGTLTEEVLRLRPGAASMKEAHLMALVNR 421
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TFT K I+FS TKQ AHRLKI+ GLA + AAELHG+L+Q QRL ALE FR L+AT
Sbjct: 422 TFTKKSIVFSRTKQQAHRLKIVMGLAGIVAAELHGDLSQTQRLAALESFRVGEASHLVAT 481
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI GV VI+Y PR L SY+HRVGRTARAG+ G A+TF+ ++DR L+KA++K
Sbjct: 482 DVAARGLDIAGVDAVISYDAPRTLASYLHRVGRTARAGKRGTALTFMEESDRKLVKAVSK 541
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
R GSKL +R + + +W IE M DQ+ + EER E+ L +AEMEA KAEN++ H
Sbjct: 542 R-GSKLVARSLPNHVVEEWHAKIEAMADQIKEVEYEERAEKHLNRAEMEAIKAENLMTHS 600
Query: 421 EEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREK 480
+EI ARP +TWF +E++KK KA + E+ + ++L+ EK KRE K
Sbjct: 601 KEIHARPAKTWFQSERQKKTLNKASLKASER-----------EDVDELEDVEKVKRETGK 649
Query: 481 NLPRKERRKLEAA 493
+ +R + EAA
Sbjct: 650 KSKKTKRAEKEAA 662
>gi|384249200|gb|EIE22682.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 662
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 277/444 (62%), Positives = 341/444 (76%), Gaps = 3/444 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L+LSRPLL+AC ALGY PTPIQAACIPLAL GRDICGSAITGSGKTAAFALP LERLL
Sbjct: 121 DLHLSRPLLKACTALGYINPTPIQAACIPLALAGRDICGSAITGSGKTAAFALPLLERLL 180
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+R +RI A L+LTPTRELAVQVHSMI +AQFTDIR LVVGGLS ++Q LR+ P+
Sbjct: 181 FRNRRIAATYGLVLTPTRELAVQVHSMITNLAQFTDIRIALVVGGLSLQVQSATLRTSPE 240
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+VVATPGR+IDHLRN+ SV L+DL L+LDEADRLL++GFS EI E++RL P++RQT+LF
Sbjct: 241 VVVATPGRLIDHLRNTQSVGLEDLQALVLDEADRLLQMGFSEEIKEVLRLTPRKRQTLLF 300
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSK 240
SAT+TE+V +L LSL +P+RL+AD + P +LT+E+VR + +E LL+LC++
Sbjct: 301 SATMTEEVRDLAALSLQRPVRLAADAAGAAPRSLTQEIVRFKGAAGPAAREGTLLALCAR 360
Query: 241 TF-TSKVIIFSGTKQAAHRLKILFGLAAL-KAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+F + I+F TK +AHR KILFGLA L AAELHGN+TQA RLE+LE FRK FL+
Sbjct: 361 SFRLGRTIVFFSTKHSAHRAKILFGLAGLPPAAELHGNMTQAARLESLEKFRKGEAAFLL 420
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATDVAARGLDI+GV VINY P L++Y+HR+GRTARAGR G AVTF D+ RSLLK +
Sbjct: 421 ATDVAARGLDILGVDAVINYDAPPALSAYLHRIGRTARAGRAGRAVTFADDSTRSLLKDV 480
Query: 359 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 418
K+ G+KL R V + + +W++ I + +A I EREE LRKAEMEA KAENM+A
Sbjct: 481 VKKTGAKLLIRSVQPEIVAQWTQRIHSLGRDIARIDLAEREEMELRKAEMEAQKAENMVA 540
Query: 419 HKEEIFARPKRTWFVTEKEKKLAV 442
H+ EI ARP RTWF T KEK +V
Sbjct: 541 HEAEIAARPPRTWFQTAKEKVASV 564
>gi|145353647|ref|XP_001421118.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581354|gb|ABO99411.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 755
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 266/443 (60%), Positives = 333/443 (75%), Gaps = 2/443 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL+LSRPL RACEALGY KPTPIQAA IP+A+TGRD+CG A+TGSGKTAAF LP LER+L
Sbjct: 152 ELHLSRPLTRACEALGYKKPTPIQAAVIPIAMTGRDVCGRAVTGSGKTAAFMLPQLERML 211
Query: 62 YR-PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+R P+ A VL+L PTRELAVQVH M E +AQFT IR LVVGGLS +Q ALR+ P
Sbjct: 212 HRGPRPAAATHVLVLVPTRELAVQVHQMTESLAQFTTIRAVLVVGGLSANVQAAALRTRP 271
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
+IVVATPGR+IDH+RN+ S L+DLA LILDEADRLLE+GF EI E+VR CPK+RQT+L
Sbjct: 272 EIVVATPGRVIDHVRNTHSFGLEDLATLILDEADRLLEMGFLEEIKEIVRQCPKKRQTLL 331
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSATLT V+ L LS+ P RLSAD P L EEV++++ + +EA L+++ S+
Sbjct: 332 FSATLTAGVEALASLSMKNPARLSADTLGTTPKRLVEEVLKLKPNQSAQKEAFLMAIVSR 391
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
++ IIFS TKQ AHRLKI+ GL+ +KA ELHG++TQ QRL AL+ FR V LIAT
Sbjct: 392 SYDKSTIIFSQTKQEAHRLKIIMGLSDIKAGELHGDMTQTQRLAALDEFRTGTVTHLIAT 451
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V VI++ P+ L SY+HRVGRTARAG++G A+TF+ ++DR L+K IAK
Sbjct: 452 DVAARGLDIPSVDAVISFDAPKTLASYLHRVGRTARAGKKGTALTFMEESDRKLVKTIAK 511
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
R G+ LK+RIV + +W K IE ME+Q+ I EER ER L+KAEMEA KA N++ H
Sbjct: 512 R-GANLKARIVPGNIVAEWHKKIEDMEEQIVQINYEERTERQLQKAEMEANKASNILEHA 570
Query: 421 EEIFARPKRTWFVTEKEKKLAVK 443
EI +RP +TWF +E++K+ A K
Sbjct: 571 AEIKSRPAKTWFQSERDKRNAQK 593
>gi|145357256|ref|XP_001422836.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144583080|gb|ABP01195.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 710
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 266/443 (60%), Positives = 333/443 (75%), Gaps = 2/443 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL+LSRPL RACEALGY KPTPIQAA IP+A+TGRD+CG A+TGSGKTAAF LP LER+L
Sbjct: 152 ELHLSRPLTRACEALGYKKPTPIQAAVIPIAMTGRDVCGRAVTGSGKTAAFMLPQLERML 211
Query: 62 YR-PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+R P+ A VL+L PTRELAVQVH M E +AQFT IR LVVGGLS +Q ALR+ P
Sbjct: 212 HRGPRPAAATHVLVLVPTRELAVQVHQMTESLAQFTTIRAVLVVGGLSANVQAAALRTRP 271
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
+IVVATPGR+IDH+RN+ S L+DLA LILDEADRLLE+GF EI E+VR CPK+RQT+L
Sbjct: 272 EIVVATPGRVIDHVRNTHSFGLEDLATLILDEADRLLEMGFLEEIKEIVRQCPKKRQTLL 331
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSATLT V+ L LS+ P RLSAD P L EEV++++ + +EA L+++ S+
Sbjct: 332 FSATLTAGVEALASLSMKNPARLSADTLGTTPKRLVEEVLKLKPNQSAQKEAFLMAIVSR 391
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
++ IIFS TKQ AHRLKI+ GL+ +KA ELHG++TQ QRL AL+ FR V LIAT
Sbjct: 392 SYDKSTIIFSQTKQEAHRLKIIMGLSDIKAGELHGDMTQTQRLAALDEFRTGTVTHLIAT 451
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V VI++ P+ L SY+HRVGRTARAG++G A+TF+ ++DR L+K IAK
Sbjct: 452 DVAARGLDIPSVDAVISFDAPKTLASYLHRVGRTARAGKKGTALTFMEESDRKLVKTIAK 511
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
R G+ LK+RIV + +W K IE ME+Q+ I EER ER L+KAEMEA KA N++ H
Sbjct: 512 R-GANLKARIVPGNIVAEWHKKIEDMEEQIVQINYEERTERQLQKAEMEANKASNILEHA 570
Query: 421 EEIFARPKRTWFVTEKEKKLAVK 443
EI +RP +TWF +E++K+ A K
Sbjct: 571 AEIKSRPAKTWFQSERDKRNAQK 593
>gi|440799062|gb|ELR20123.1| DEAD/DEAH box helicase domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 762
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 244/441 (55%), Positives = 338/441 (76%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
++L+LSR LL+A LGY +PTP+Q+ IP+AL G+D+C SA TGSGKTA+F LP LERL
Sbjct: 196 LDLHLSRALLKAVANLGYDRPTPVQSQAIPIALQGKDVCASATTGSGKTASFVLPILERL 255
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
++R KRI A RV+ILTPTRELA+Q HS+IEK+A+FTDI CLVVGGLS K+QE ALR P
Sbjct: 256 IHRDKRIMATRVVILTPTRELAIQCHSVIEKLAKFTDITACLVVGGLSNKVQEAALRRHP 315
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIVVATPGR+IDHLRN+ S L+ + +L+LDEADRLL LGF+ E+ ++++ CP RQT+L
Sbjct: 316 DIVVATPGRIIDHLRNAQSFTLETVDILVLDEADRLLSLGFADELEQIIKFCPPNRQTLL 375
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE+VD L LSL +P+R+ DP+ + S + +E ++I+ RE +++A+LL+LC++
Sbjct: 376 FSATMTEEVDRLASLSLNRPVRVRLDPNMRVASGIQQEFIKIKEAREFDRDAMLLALCTR 435
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +V+IF K+ AHRLK++FGLA LKAAELHGNL+Q QRLEALE FR + D+L+AT
Sbjct: 436 SFKKRVLIFFRAKKEAHRLKVIFGLAGLKAAELHGNLSQNQRLEALEKFRDGNFDYLLAT 495
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARGLDI+G++T+INY R + SY+HRVGRTAR G G +VTF+++ DR + K I K
Sbjct: 496 DLAARGLDILGIETIINYNMARTVESYIHRVGRTARWGHSGKSVTFISEQDRKVFKEIMK 555
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
K+ +R++ + I +W + I+ M+ ++ I E EE+ LR +MEA+K +NMI H
Sbjct: 556 STNQKVSNRVIPPKIIDQWREKIDSMKGDISQIFAMEYEEKQLRLTQMEASKTQNMIEHH 615
Query: 421 EEIFARPKRTWFVTEKEKKLA 441
+EI +RP RTWF T++++ LA
Sbjct: 616 DEIMSRPPRTWFQTKEQRDLA 636
>gi|428164262|gb|EKX33294.1| hypothetical protein GUITHDRAFT_81602 [Guillardia theta CCMP2712]
Length = 679
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 257/461 (55%), Positives = 344/461 (74%), Gaps = 14/461 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL+LSRPLL+A +LG+ KPT IQ+ IP+AL G+D+C S+ TGSGKTAAFALP LERLL
Sbjct: 117 ELHLSRPLLKAVSSLGFIKPTVIQSMVIPVALQGKDVCASSRTGSGKTAAFALPILERLL 176
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
YRP+R+ A RVL+LTPTRELAVQ H+M+EK+A FTDIRC +V+GG+ ++QET LR PD
Sbjct: 177 YRPRRVAATRVLVLTPTRELAVQAHAMMEKLAAFTDIRCYIVIGGVKNQLQETELRKKPD 236
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+VVATPGRMIDHLRN+ + + L +L+LDEADRLLE+GF+ E+ ELV++CP++RQTMLF
Sbjct: 237 VVVATPGRMIDHLRNAPGIGFEALEILVLDEADRLLEMGFTEEVQELVKMCPQQRQTMLF 296
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKR------------PSTLTEEVVRIRRMREVN 229
SAT+T DVD+L SL +P+R++AD S + PS+L +E VRIR+ E +
Sbjct: 297 SATMTHDVDKLAAFSLRRPVRVTADGSIRTDETQGTLNKVAVPSSLLQEFVRIRKEHEKD 356
Query: 230 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 289
+EA+LL LC++TF + I+F K+ AHRL+I+FGL L+ ELHGNLTQAQRLEALE F
Sbjct: 357 REAILLCLCTRTFHKRTIVFCREKRRAHRLRIIFGLLGLRVEELHGNLTQAQRLEALENF 416
Query: 290 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 349
+++ DFL+ATD+A RGLDI GV V+N PR+L YVHRVGRTARAGR+G AVT D
Sbjct: 417 KEEKSDFLLATDLAGRGLDIKGVDVVVNLEVPRNLAEYVHRVGRTARAGRKGRAVTLADD 476
Query: 350 NDR--SLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAE 407
+ R S+LK + + A +K R+V +I IE++E VAA+++EE ER +R A+
Sbjct: 477 SQRTKSMLKEVVRSAPDVVKRRVVPPDAIAAMRSRIEELEADVAAVMEEEAVERQMRIAD 536
Query: 408 MEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKAS 448
ME KA N++ H+E+I ARPK+TWF + +EK A +++ +S
Sbjct: 537 MEGEKARNLVEHEEDILARPKKTWFQSREEKLQARESNPSS 577
>gi|301110278|ref|XP_002904219.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262096345|gb|EEY54397.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 758
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 252/438 (57%), Positives = 328/438 (74%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L LSRP++RA +G+ KPTPIQ IP+ALTG+DIC SA TGSGKTAAF LP LERL
Sbjct: 135 DLKLSRPIMRAISHIGFEKPTPIQQRAIPIALTGKDICASAQTGSGKTAAFLLPILERLQ 194
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+R +R+ + RV+I+ P RELA Q SM+E++A+FTDI C L VGGL K QE LR+ PD
Sbjct: 195 FRSRRVQSTRVMIICPVRELATQCQSMLEQLARFTDITCSLAVGGLPLKAQEAELRNRPD 254
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+VV TPGRMIDHLRNS SV +DDL +L+LDEADRLLELGF+ E+ ELVR+CP +RQTMLF
Sbjct: 255 VVVCTPGRMIDHLRNSKSVHMDDLEILVLDEADRLLELGFTEEVLELVRMCPVQRQTMLF 314
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T VD+LI LS+ +P+R+S DP L +E VRIR RE ++EA+LL+LC++T
Sbjct: 315 SATMTSKVDQLIDLSMKRPVRISTDPLFDMAKHLVQEFVRIRPNREDDREAILLALCTRT 374
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F S I+F TK AHR+ I+FGLA +KAAELHGNL Q +RLEAL+ FR VD L+ TD
Sbjct: 375 FRSNTIVFMETKSHAHRMMIIFGLAGIKAAELHGNLQQRERLEALQKFRDGTVDVLLCTD 434
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARG+D+ GV VINY P+D+T+YVHRVGRTARAGR G AVT +++ R ++K +++
Sbjct: 435 IAARGIDVRGVHAVINYEMPKDITTYVHRVGRTARAGRNGRAVTLTSESRRLVMKQVSRH 494
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 421
+KSR V + I +W IE M + V ++ EE E+ +R+AE EAT+A N++ H++
Sbjct: 495 CQGFVKSRAVPDPVIAQWKARIESMLEDVKLVMHEETLEKRMREAEKEATRATNLLKHRD 554
Query: 422 EIFARPKRTWFVTEKEKK 439
EI ARP RTWF++EKEKK
Sbjct: 555 EINARPARTWFMSEKEKK 572
>gi|159489242|ref|XP_001702606.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280628|gb|EDP06385.1| predicted protein [Chlamydomonas reinhardtii]
Length = 602
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 275/452 (60%), Positives = 347/452 (76%), Gaps = 8/452 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+LN+SRPLL+A EALGY PTPIQAACIPLAL GRDICGSA+TGSGKTAAFALP LERLL
Sbjct: 153 DLNISRPLLKAVEALGYKSPTPIQAACIPLALAGRDICGSAVTGSGKTAAFALPFLERLL 212
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+RP+ + A VL+LTPTRELAVQ+HSMIEK+AQFTDI L+VGGLS ++Q LR P+
Sbjct: 213 HRPRGLAATYVLVLTPTRELAVQIHSMIEKLAQFTDINVALIVGGLSLQVQAITLRQSPE 272
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+VVATPGR+IDHLRNS SV L+DLAVL+LDEADRLLE+GF E+ E+VR P++RQTMLF
Sbjct: 273 VVVATPGRLIDHLRNSQSVGLEDLAVLVLDEADRLLEMGFREEVAEVVRAAPRKRQTMLF 332
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSK 240
SAT + V +L+ LSL +P+RL+AD + P LT+E+VR++ +EAV L+LC++
Sbjct: 333 SATFNDQVRDLVALSLKQPVRLAADAARAAPKLLTQEIVRLKGPAAAATKEAVCLALCAR 392
Query: 241 TFT--SKVIIFSGTKQAAHRLKILFGLAAL-KAAELHGNLTQAQRLEALELFRKQHVDFL 297
+F + I+F TK AHRLKILFGLA L AAELHGN++Q RLE+LE FR+ FL
Sbjct: 393 SFGDRGRTIVFCSTKTKAHRLKILFGLAGLPPAAELHGNMSQTARLESLESFRRGDTAFL 452
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATDVAARGLDI GV+ V+NY P L +Y+HR+GRTARAG G AVT V D DR LLK
Sbjct: 453 LATDVAARGLDIQGVEVVVNYDAPPKLETYLHRIGRTARAGAAGVAVTLVEDGDRGLLKE 512
Query: 358 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 417
+ K+ G ++R+V ++ +W +E++E V AIL EER+E LRKAEMEA KA NM+
Sbjct: 513 LGKKVG---RARLVPAAAVVQWQSRVERLERDVRAILAEERDEADLRKAEMEANKAVNMM 569
Query: 418 AHKEEIFARPKRTWFVTEKEKK-LAVKADKAS 448
H+ EI +RPKRTWFVTEK+K+ LA ++ +A+
Sbjct: 570 EHESEIMSRPKRTWFVTEKQKRELAARSAQAA 601
>gi|348667582|gb|EGZ07407.1| hypothetical protein PHYSODRAFT_527947 [Phytophthora sojae]
Length = 773
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 249/438 (56%), Positives = 326/438 (74%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L LSRP++RA +G+ KPTPIQ IP+ALTG+DIC SA TGSGKTAAF LP LERL
Sbjct: 153 DLKLSRPIMRAISHIGFEKPTPIQQRAIPIALTGKDICASAQTGSGKTAAFLLPILERLQ 212
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+R +R+ + R +I+ P RELA Q SM E++A+FTDI C L VGGL K QE LR+ PD
Sbjct: 213 FRSRRVQSTRTMIICPVRELATQCQSMFEQLARFTDITCSLAVGGLPLKAQEAELRNRPD 272
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+VV TPGRMIDHLRNS SV +DDL +L+LDEADRLLELGF+ E+ ELVR+CP +RQTMLF
Sbjct: 273 VVVCTPGRMIDHLRNSKSVHMDDLEILVLDEADRLLELGFTEEVLELVRMCPVQRQTMLF 332
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T VD+LI LS+ +P+R+S DP L +E VRIR RE ++EA+LL+LC++T
Sbjct: 333 SATMTSKVDQLIDLSMKRPVRISTDPLFDMAKHLVQEFVRIRPNREDDREAILLALCTRT 392
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F + I+F TK AHR+ I+FGLA +KAAELHGNL Q +RLEAL+ FR VD L+ TD
Sbjct: 393 FRTNTIVFMETKSHAHRMMIIFGLAGIKAAELHGNLMQRERLEALQKFRDGTVDILLCTD 452
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARG+D+ GV VINY P+D+T+YVHRVGRTARAGR G AVT +++ R ++K +++
Sbjct: 453 IAARGIDVRGVHAVINYEMPKDITTYVHRVGRTARAGRNGRAVTLTSESRRLVMKQVSRH 512
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 421
+KSR V + I +W IE M+ V ++ EE E+ +R+AE EAT+A N++ H++
Sbjct: 513 CKGFVKSRAVPDPVIAQWKARIESMQGDVKLVMHEETLEKRMREAEKEATRATNLLKHRD 572
Query: 422 EIFARPKRTWFVTEKEKK 439
EI +RP RTWF++EKEKK
Sbjct: 573 EINSRPARTWFMSEKEKK 590
>gi|384493436|gb|EIE83927.1| hypothetical protein RO3G_08632 [Rhizopus delemar RA 99-880]
Length = 711
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 260/443 (58%), Positives = 337/443 (76%), Gaps = 2/443 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+NLSRP+L+ +LG+ KPTPIQ+ IP+AL G+DICG A TGSGKTAAF +P LERLLY
Sbjct: 221 MNLSRPILKGVTSLGFVKPTPIQSQTIPIALMGKDICGGAATGSGKTAAFVIPILERLLY 280
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RP++ P+ RVLIL PTRELA QVHS K A +TDI CL VGGLS K QE L+ PD+
Sbjct: 281 RPRQTPSTRVLILCPTRELAAQVHSAAVKFAAYTDITFCLCVGGLSLKTQEQELKLKPDV 340
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
VVATPGR+IDH+RN+ LD +L++DEADR+LE GF+ E+ E+V+ CPK RQTMLFS
Sbjct: 341 VVATPGRLIDHVRNTSGFHLDACEILVMDEADRMLEDGFADELGEIVKSCPKSRQTMLFS 400
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T++VD+LI++SL P+RL D S + S L +E VRIR+ RE ++ AVLL+LC K+F
Sbjct: 401 ATMTDNVDQLIRMSLHNPVRLFVDRSNQAASRLIQEFVRIRQAREADRSAVLLALCKKSF 460
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+KVIIF +K AAH++KILFGL L AAELHGNLTQ QRLEALE FR VD+L+ATD+
Sbjct: 461 KNKVIIFFRSKAAAHQMKILFGLMGLNAAELHGNLTQEQRLEALEQFRDNQVDYLLATDL 520
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK-- 360
AARGLDI G++TVINY P Y+HRVGRTARAGR G +VT V ++DR +LK K
Sbjct: 521 AARGLDIKGIETVINYNMPTQFAQYLHRVGRTARAGRNGRSVTLVGESDRKMLKMAIKSS 580
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
AGS++K+R+V +++ K+ +E+++ Q+ IL+EE+EE+ LR AEM+ ++ENMI H+
Sbjct: 581 SAGSQVKNRVVPNEAVQKYKLKVEKLQRQIKEILEEEKEEKALRNAEMQIKRSENMIKHQ 640
Query: 421 EEIFARPKRTWFVTEKEKKLAVK 443
+EI +RP RTWF +EKEKK A K
Sbjct: 641 DEIMSRPARTWFQSEKEKKNAKK 663
>gi|325179957|emb|CCA14359.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 843
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 294/631 (46%), Positives = 401/631 (63%), Gaps = 37/631 (5%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ LSRP+LRA + +KPT IQ IP+AL G+DIC SA TGSGKTAAF LP LERL
Sbjct: 220 DFKLSRPILRALNQMELTKPTLIQEYAIPMALLGKDICASAQTGSGKTAAFLLPILERLQ 279
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
R +RI A RV+I+ P RELA Q S++ K+A+FTDI LVVGGL K QE LR+ PD
Sbjct: 280 LRTRRIAATRVIIICPVRELATQCQSVLIKLARFTDITSALVVGGLPLKAQELELRTCPD 339
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+V TPGRMIDHLRNS SV LD L +L+LDEADRLLELGF+ EI E+VR+CP+ RQTMLF
Sbjct: 340 IIVCTPGRMIDHLRNSPSVHLDSLEILVLDEADRLLELGFTEEIQEIVRMCPRARQTMLF 399
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T +D+LI LS+ +P+R+ ADP L +E VRIR RE +++A+LL+LC++
Sbjct: 400 SATMTSKIDQLIALSMKRPVRICADPLYDMSKHLVQEFVRIRPNREADRDAILLALCTRA 459
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT K I+F TK AHR+ ILFGL+ +KAAELHGNLTQ +RL+ALE FR+ VD L+ TD
Sbjct: 460 FTQKTIVFMETKVHAHRMMILFGLSGIKAAELHGNLTQQERLDALEKFRQGAVDILLCTD 519
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARG+D+ GV+ VINY P+D+T+YVHRVGRTARAG+ G AVT ++ R ++K + +
Sbjct: 520 VAARGIDVKGVRAVINYEMPKDITTYVHRVGRTARAGQVGRAVTLTSEYRRLIMKQVTRH 579
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 421
KSR V + IT+W I+ ++ + IL EE+ E+ + E EA +A+N+I++++
Sbjct: 580 CHGFAKSRAVPDSVITQWKAKIQSLQQDITHILTEEKVEKRMHNVEKEARRAQNLISYQD 639
Query: 422 EIFARPKRTWFVTEKEKK--------LAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEK 473
EI +RP RTWFV+EKEKK ++ A E+GK + A++ K K
Sbjct: 640 EITSRPARTWFVSEKEKKKIQENAAIQRLEDQSAEAERGKSKKRKADGDSGADEAKPKHL 699
Query: 474 RKREREKNLPRKERRKLEAAREMLEDEDQVDKLQGSGKDKKEKAGISMVDLAYRRAKAVK 533
R+R R+ +L +A + +++ Q K KK AG + +R+
Sbjct: 700 NHRKRRLQEIRQHEEQLVSAHKQHDEDGQSIKPAKKPFTKKSVAGAAK---QAKRSTLQA 756
Query: 534 AKQKALDAGKIVKSNGKKSKHSSQESNSRAKEM-RELFHSDMSE----KKQKRTGGI--- 585
A+QK ++ + SN K+ K ++S + K+ R +F SD+ + KKQ R G
Sbjct: 757 ARQKEQESIAEL-SNRKRQK---RQSIGKGKDQTRSMFGSDIGDAKNSKKQSRLPGTRKP 812
Query: 586 --------------GKKPKHSFKSKSRYKRR 602
KK K +FKSKS++KRR
Sbjct: 813 AFEFKEKITDRKHHSKKSKQAFKSKSKFKRR 843
>gi|402221947|gb|EJU02015.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 809
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/492 (53%), Positives = 354/492 (71%), Gaps = 9/492 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+NLSRPLL+A LG+ KPTPIQAA IP+AL G+D+ G A+TGSGKTAAF +P LERLL+
Sbjct: 224 MNLSRPLLKALANLGFEKPTPIQAAAIPVALLGKDVVGGAVTGSGKTAAFVIPILERLLF 283
Query: 63 RP--KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
R K RV+IL PTRELAVQ H++ +I FTD+R LVVGGLS K QE LR+ P
Sbjct: 284 RDRGKAAATTRVVILCPTRELAVQCHAVATRIGSFTDVRFSLVVGGLSLKGQEAELRTRP 343
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D+V+ATPGR+IDHLRNS S LD L VLI+DEADR+LE GF+AE+ E++ CPK+RQTML
Sbjct: 344 DVVIATPGRLIDHLRNSPSFSLDMLDVLIMDEADRMLEEGFAAELGEIISACPKQRQTML 403
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T+ VDELI++ L KP+RL DP S LT+E VR+R RE ++ A+L++LC +
Sbjct: 404 FSATMTDSVDELIRMGLNKPVRLFVDPRKSTASGLTQEFVRVRDNREDDRPALLMTLCKR 463
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF ++ IIF +K AH+++I+FGL +KA ELHGNLTQ QRL AL+ F+ VDFL+AT
Sbjct: 464 TFRTRCIIFFRSKAFAHQMRIVFGLLGMKAGELHGNLTQEQRLRALQQFKDGDVDFLLAT 523
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+A+RGLDI G++TVINY P + Y+HRVGRTARAG +G +VT V + DR +LKA+ K
Sbjct: 524 DLASRGLDIRGIETVINYDMPGQIAQYLHRVGRTARAGSKGRSVTLVGEADRKMLKAVIK 583
Query: 361 RA-GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
+ ++K R+V +++ K + ++ + D+V A+L+EE+EE+ LR+AEM+ K EN+I H
Sbjct: 584 HSPADQVKHRLVPAEAVAKMAAKLKGLHDEVDAVLKEEKEEKALRQAEMQLKKGENLIEH 643
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRERE 479
+E IF+RP RTWF TEKEKK + + K K G ++ + +D KR++
Sbjct: 644 EEAIFSRPARTWFQTEKEKK-----NTQELSKEKYVGGFASNVKDNKDENKSAGPKRDKL 698
Query: 480 KNLPRK-ERRKL 490
L RK +RRKL
Sbjct: 699 SGLSRKAKRRKL 710
>gi|392597372|gb|EIW86694.1| DEAD-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 750
Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust.
Identities = 246/466 (52%), Positives = 341/466 (73%), Gaps = 4/466 (0%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ +NLSRPL +A LG++KPTPIQ A IP+AL G+DI G+A+TGSGKTAAF +P LERL
Sbjct: 181 LTMNLSRPLQKALTTLGFNKPTPIQVAAIPVALIGKDIVGNAVTGSGKTAAFVIPMLERL 240
Query: 61 LYRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
LYR K A R LIL PTREL VQ + + +K+A +TD R LVVGGLS K QE ALR+
Sbjct: 241 LYREKGKSAAATRCLILVPTRELGVQCYEVAQKLAAYTDARIALVVGGLSLKSQEAALRT 300
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
PD+V+ATPGR++DH+ NS S +LD L +L+LDEADR+L GF+ E+ E+++ CPK RQT
Sbjct: 301 RPDVVIATPGRLVDHIHNSPSFNLDALDILVLDEADRMLSEGFADELSEIIKACPKSRQT 360
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
MLFSAT+T+ VDEL+K+SL KP+RL DP L +E VR+R +E + ++L++LC
Sbjct: 361 MLFSATMTDSVDELVKMSLNKPVRLFVDPRRTTARGLVQEFVRVRAEKETERSSLLVALC 420
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+TFTS VI+F +K+ AH+++I+F + +K ELHG+LTQ QRL+AL+LFR V+FL+
Sbjct: 421 QRTFTSGVIVFFRSKKLAHQMRIIFRMLDMKCEELHGDLTQEQRLQALQLFRDGQVNFLM 480
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+A+RGLDI G++TVINY P Y+HRVGRTARAG+ G ++T V + DR +LK++
Sbjct: 481 ATDLASRGLDIKGIETVINYDMPNQAAQYLHRVGRTARAGKTGRSLTLVGEADRKMLKSV 540
Query: 359 AKR--AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENM 416
K +G ++ R+V +S+ KWSK I ++D+++ +LQEE+EE+ +R+AEME K +NM
Sbjct: 541 IKHSASGENIRHRVVPAESVAKWSKRIADLKDEISMVLQEEKEEKQIRQAEMELKKGKNM 600
Query: 417 IAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSA 462
I H++EIF+RP RTWF +EKEK A + K E + + V +A
Sbjct: 601 IDHEKEIFSRPARTWFQSEKEKNKAAASSKQEHENANKTDSGVDAA 646
>gi|169844029|ref|XP_001828736.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130]
gi|116510107|gb|EAU93002.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130]
Length = 754
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 263/514 (51%), Positives = 370/514 (71%), Gaps = 20/514 (3%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+++NLSRP+L+A +LG++KPTPIQA+ IP+AL G+DI G+A+TGSGKTAAF +P LERL
Sbjct: 177 LQMNLSRPILKAISSLGFTKPTPIQASTIPVALLGKDIVGNAVTGSGKTAAFMIPMLERL 236
Query: 61 LYRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
LYR K R A R LIL PTRELAVQ + + +++ TDI+ CL+VGGLS K QE ALR
Sbjct: 237 LYREKGKRAAATRCLILLPTRELAVQCYEVGKRLGAHTDIQFCLLVGGLSLKAQEAALRQ 296
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
PD+V+ATPGR+IDH+RNS+ +LD L +L+LDEADR+L GF+ E+ E+++ CPK RQT
Sbjct: 297 RPDVVLATPGRLIDHVRNSVGFNLDSLDILVLDEADRMLSEGFADELTEIIKACPKSRQT 356
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
MLFSAT+T+ VDELIK+SL KP+RL DP L +E VRIR +E ++ A+L++LC
Sbjct: 357 MLFSATMTDSVDELIKMSLNKPVRLFVDPKRSTARGLIQEFVRIR--KESDRPAMLVALC 414
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+T+ KVIIF +K+ AH+++I+F L +K AELHG+L+Q QRL+AL+ FR+ VD+L+
Sbjct: 415 KQTYKHKVIIFVRSKKLAHQMRIVFSLLGMKCAELHGDLSQEQRLQALQSFREGSVDYLM 474
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+A+RGLDI GV+TV+NY P + Y+HRVGRTARAGR+G +VT V + DR LLKA
Sbjct: 475 ATDLASRGLDIKGVETVVNYDMPGQMAQYLHRVGRTARAGRKGKSVTLVGEADRKLLKAA 534
Query: 359 AKRAGS--KLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENM 416
K A +++ R++ + K++ +E ++ ++A +++EE+EE+ LR+AEME TK ENM
Sbjct: 535 IKHAAGEDQVRQRVLDTTVVQKYADKLEGLKGEIAEVMREEKEEKQLRQAEMELTKGENM 594
Query: 417 IAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKE-KRK 475
+ H++EIF+RP RTWF T KEK+ A + K + +GK SA + + K E K
Sbjct: 595 MKHQDEIFSRPARTWFQTNKEKEKAKEISK-QLHEGK-------SAAKGKQSKADESKPS 646
Query: 476 REREKNLPRKERRKLEAAREMLEDEDQVDKLQGS 509
R++ L RK +R R+M +ED+ +Q S
Sbjct: 647 RDKYSGLSRKAKR-----RKMAMEEDKESGVQKS 675
>gi|392571512|gb|EIW64684.1| DEAD-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 772
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 258/505 (51%), Positives = 360/505 (71%), Gaps = 11/505 (2%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ +NLSRP++++ LG++ PTPIQAA IP+AL G+D+ G+A+TGSGKTAAF +P LERL
Sbjct: 186 LSMNLSRPIIKSITTLGFTTPTPIQAATIPVALLGKDVVGNAVTGSGKTAAFIIPMLERL 245
Query: 61 LYRP--KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
+YR K+ A R LIL PTRELAVQ + + K+A TDIR LVVGGLS K QET LR+
Sbjct: 246 MYRDRGKKAAATRCLILAPTRELAVQCYEVGSKLAAHTDIRFALVVGGLSVKAQETNLRT 305
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
PD+V+ATPGR+IDHLRNS + LD L +L+LDEADR+LE GFS E+ E++ CP RQT
Sbjct: 306 RPDVVIATPGRLIDHLRNSPTFTLDALDILVLDEADRMLEDGFSDELTEIITSCPTSRQT 365
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
MLFSAT+T+ VDEL+++SL KP+RL DP L +E VR+R +E + A+L++LC
Sbjct: 366 MLFSATMTDSVDELVRMSLNKPVRLFVDPKRSTARGLLQEFVRVRAGKETERSALLVALC 425
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
++F ++ IIF +K+ AH+++I+F L +K ELHG+LTQ QRL+AL+ FR HVD+L+
Sbjct: 426 KRSFKARAIIFYRSKKLAHQMRIMFSLLGMKCDELHGDLTQEQRLKALQQFRDGHVDYLM 485
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+A+RGLDI G++TVINY P L+ Y+HRVGRTARAG++G +VT V + DR LLKA
Sbjct: 486 ATDLASRGLDIKGIETVINYDMPGTLSQYLHRVGRTARAGKKGRSVTLVGEADRKLLKAA 545
Query: 359 AKRAGS--KLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENM 416
K + S +++ R V + + KW++ + ++++++ ILQEE+EE+ +R+AEME K +NM
Sbjct: 546 IKHSSSEDQVRHRQVPTEVLAKWAQKLAGLKEEISEILQEEKEEKHIRQAEMELKKGQNM 605
Query: 417 IAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKR 476
I H+ EIF+RP RTWF T KEK A K+ E G +G + + Q A + K KR
Sbjct: 606 IEHEAEIFSRPARTWFQTGKEKAQAEALSKSQYEAGFDAGQKGKAKQAA----AEPKPKR 661
Query: 477 EREKNLPRKERRKLEAAREMLEDED 501
++ L R+ +R+ A M +DED
Sbjct: 662 DKFAGLTRRAKRRKMA---MEDDED 683
>gi|152013519|sp|A4QYM6.1|DRS1_MAGO7 RecName: Full=ATP-dependent RNA helicase DRS1
gi|440472865|gb|ELQ41697.1| ATP-dependent RNA helicase drs-1 [Magnaporthe oryzae Y34]
gi|440482949|gb|ELQ63394.1| ATP-dependent RNA helicase drs-1 [Magnaporthe oryzae P131]
Length = 790
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 253/499 (50%), Positives = 348/499 (69%), Gaps = 20/499 (4%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRP+LR ++G++KPTPIQ+ IP+AL G+D+ G A+TGSGKTAAF +P LERLLY
Sbjct: 260 MSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLY 319
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK++P RV+IL PTRELA+Q H++ K+A TDI+ CL VGGLS K+QE+ LR PD+
Sbjct: 320 RPKKVPTSRVVILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQESELRLRPDV 379
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D + +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 380 IIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFS 439
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD LI++ L KP+RL D K TLT+E VR+R RE + L+ LC +
Sbjct: 440 ATMTSSVDNLIRVGLNKPVRLMVDSQKKTVVTLTQEFVRLRPGREEKRMGYLVYLCKNLY 499
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T +VIIF K+ AH +I+FGL L AELHG+++Q QR++++E FR V FL+ATD+
Sbjct: 500 TERVIIFFRQKKIAHHARIIFGLLGLSCAELHGSMSQIQRIQSVEAFRDGKVSFLLATDL 559
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV TVINY P+ L YVHRVGRTARAGR G A+T + DR ++KA K
Sbjct: 560 ASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAG 619
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SRI+ W I+++ED+V A+++EE+EE++L +A+ME K ENMI +
Sbjct: 620 KAQGAKISSRIIDAADADSWQAKIDELEDEVEAVMREEKEEKVLAQADMEMRKGENMIRY 679
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRERE 479
+++I ARPKRTWF TEK+KK A +A +A++ N V A +K+
Sbjct: 680 EDDIKARPKRTWFETEKDKKAAREAGRAAL-------NGVREAL----------KKKHGG 722
Query: 480 KNLPRKERRKLEAAREMLE 498
KNL K+++KL+A E E
Sbjct: 723 KNLSNKDKKKLDAMAEAKE 741
>gi|389630538|ref|XP_003712922.1| ATP-dependent RNA helicase DRS1 [Magnaporthe oryzae 70-15]
gi|351645254|gb|EHA53115.1| ATP-dependent RNA helicase DRS1 [Magnaporthe oryzae 70-15]
Length = 799
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 253/499 (50%), Positives = 348/499 (69%), Gaps = 20/499 (4%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRP+LR ++G++KPTPIQ+ IP+AL G+D+ G A+TGSGKTAAF +P LERLLY
Sbjct: 269 MSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLY 328
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK++P RV+IL PTRELA+Q H++ K+A TDI+ CL VGGLS K+QE+ LR PD+
Sbjct: 329 RPKKVPTSRVVILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQESELRLRPDV 388
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D + +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 389 IIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFS 448
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD LI++ L KP+RL D K TLT+E VR+R RE + L+ LC +
Sbjct: 449 ATMTSSVDNLIRVGLNKPVRLMVDSQKKTVVTLTQEFVRLRPGREEKRMGYLVYLCKNLY 508
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T +VIIF K+ AH +I+FGL L AELHG+++Q QR++++E FR V FL+ATD+
Sbjct: 509 TERVIIFFRQKKIAHHARIIFGLLGLSCAELHGSMSQIQRIQSVEAFRDGKVSFLLATDL 568
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV TVINY P+ L YVHRVGRTARAGR G A+T + DR ++KA K
Sbjct: 569 ASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAG 628
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SRI+ W I+++ED+V A+++EE+EE++L +A+ME K ENMI +
Sbjct: 629 KAQGAKISSRIIDAADADSWQAKIDELEDEVEAVMREEKEEKVLAQADMEMRKGENMIRY 688
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRERE 479
+++I ARPKRTWF TEK+KK A +A +A++ N V A +K+
Sbjct: 689 EDDIKARPKRTWFETEKDKKAAREAGRAAL-------NGVREAL----------KKKHGG 731
Query: 480 KNLPRKERRKLEAAREMLE 498
KNL K+++KL+A E E
Sbjct: 732 KNLSNKDKKKLDAMAEAKE 750
>gi|403415272|emb|CCM01972.1| predicted protein [Fibroporia radiculosa]
Length = 782
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 258/499 (51%), Positives = 354/499 (70%), Gaps = 10/499 (2%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ +NLSRP++++ ALG++KPTPIQAA IP+AL G+DI G+A+TGSGKTAAF +P LERL
Sbjct: 196 LSMNLSRPIIKSITALGFNKPTPIQAATIPVALLGKDIVGNAVTGSGKTAAFIIPMLERL 255
Query: 61 LYRP--KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
LYR K+ A R L+L PTREL VQ + K+A TDIR LVVGGLS K QE LR+
Sbjct: 256 LYRDRGKKAAATRCLVLVPTRELGVQCFEVGTKLAAHTDIRFSLVVGGLSVKTQEATLRT 315
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
PD+V+ATPGR+IDHLRNS + LD L +L+LDEADR+L GF+ E+ E+++ CP RQT
Sbjct: 316 RPDVVIATPGRLIDHLRNSPAFTLDALDILVLDEADRMLSDGFADELTEIIKSCPMSRQT 375
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
MLFSAT+T+ VDEL+++SL KP+RL DP S L +E VR+R +E + A+L++LC
Sbjct: 376 MLFSATMTDSVDELVRMSLDKPVRLFVDPKRSTASGLVQEFVRVRAGKESERSALLVTLC 435
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+TF S+ IIF +K+ AH+++I+F L +KA ELHG+L+Q QRL+AL+ FR VDFL+
Sbjct: 436 KRTFKSRAIIFFRSKKLAHQMRIVFRLLDMKADELHGDLSQEQRLKALQQFRDGAVDFLM 495
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+A+RGLDI G++TVINY P L Y+HRVGRTARAG++G +VT V + DR +LKA
Sbjct: 496 ATDLASRGLDIKGIETVINYDMPSQLAQYLHRVGRTARAGKKGRSVTLVGEADRKMLKAS 555
Query: 359 AKRAGSK--LKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENM 416
K A ++ ++ R + +++ KWS ++ M+ ++A +LQEE+EE+ LR+AEME K +NM
Sbjct: 556 IKHAMAEDSVRHRQIPPEAVAKWSAKLDDMKKEIAEVLQEEKEEKQLRQAEMEVKKGQNM 615
Query: 417 IAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKR 476
I H+ EIF+RP RTWF T KEK A K E G S ++ ++ ++K KR
Sbjct: 616 IEHEAEIFSRPARTWFQTGKEKAKAEALSKEQYETG------THSTKKGKEKAPEDKPKR 669
Query: 477 EREKNLPRKERRKLEAARE 495
E+ L RK +R+ A E
Sbjct: 670 EKYAGLSRKAKRRKMAMEE 688
>gi|320162646|gb|EFW39545.1| ATP-dependent RNA helicase DRS1 [Capsaspora owczarzaki ATCC 30864]
Length = 924
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 254/474 (53%), Positives = 336/474 (70%), Gaps = 6/474 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E+NLSRPLLRA +L ++ T IQAA IP AL GRD+ A TGSGKTAAF LP LERLL
Sbjct: 346 EMNLSRPLLRAISSLNFANATDIQAATIPPALMGRDLVACAKTGSGKTAAFLLPVLERLL 405
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
YR K PA RVL+L+PTRELAVQ H+M EK+A+FTDIR L+ GG STK Q+ LR+ PD
Sbjct: 406 YRQKTNPASRVLVLSPTRELAVQCHAMGEKLAKFTDIRMSLICGGFSTKRQQAELRAHPD 465
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR+IDHL+NS DL+ + VLI+DEADRLLE+GF E+ E++R C RQTMLF
Sbjct: 466 VIVATPGRLIDHLQNSPGFDLEGIEVLIMDEADRLLEMGFKEEVDEIIRQCSVSRQTMLF 525
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V+ LI LS+ KPLR+ + + + LT+E VR+R RE +EA++L++C ++
Sbjct: 526 SATMTDEVENLIALSMNKPLRVFINKNTDTATNLTQEFVRVRPQREKEKEAIVLAVCKRS 585
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F +K I+F +KQ AHR K++FGL LKAAELHG+L Q QRLE+LE F++ VDFL+ATD
Sbjct: 586 FHTKTIVFFRSKQGAHRAKVIFGLFGLKAAELHGDLNQLQRLESLEAFKEGRVDFLLATD 645
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+A+RGLDI+GV+TV+N P LT Y+HRVGRTARAGR G +++ V + +R LLK I K
Sbjct: 646 LASRGLDIVGVETVVNADMPNTLTQYIHRVGRTARAGRAGRSLSLVCEGERKLLKEIVKH 705
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 421
A L SR + I K+S I +AAI++ E+EE++L +AEMEA KA NM+ H++
Sbjct: 706 ATVPLSSRSIPSDVIEKFSTKIRGASKDIAAIMKAEKEEKMLLQAEMEAAKASNMMEHEK 765
Query: 422 EIFARPKRTWFV------TEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLK 469
EI+++P RTWF T KE A A +KGK + + EDL+
Sbjct: 766 EIYSKPARTWFQDALAKKTSKENSKVAHAGGAVADKGKTQQARPSKRKSEEDLQ 819
>gi|409051554|gb|EKM61030.1| hypothetical protein PHACADRAFT_24252 [Phanerochaete carnosa
HHB-10118-sp]
Length = 793
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 242/452 (53%), Positives = 338/452 (74%), Gaps = 4/452 (0%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
M +NLSRP+L+A +L ++KPTPIQAA IP+AL G+DI G+A+TGSGKTAAF +P +ERL
Sbjct: 197 MSMNLSRPVLKAIASLNFTKPTPIQAATIPVALLGKDIVGNAVTGSGKTAAFMIPMIERL 256
Query: 61 LYRP--KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
+YR K+ A R ++L PTREL VQ + + K+A TDIR CLVVGGLS K QE ALR+
Sbjct: 257 MYRERGKKAAATRCMVLVPTRELGVQCYEVGTKLAAHTDIRFCLVVGGLSLKSQEVALRT 316
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
PDI++ATPGR+IDH+RN+ + LD L +L+LDEADR+L GF E+ E+++ CP RQT
Sbjct: 317 RPDIIIATPGRLIDHIRNTPTFTLDTLDILVLDEADRMLSEGFQDELAEIIKSCPVSRQT 376
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
MLFSAT+T+ VDEL+++SL +P+RL DP L +E VR+R +E + A+L+SLC
Sbjct: 377 MLFSATMTDSVDELVRMSLNQPVRLFVDPKRTTARGLLQEFVRVRASKEDERSALLVSLC 436
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+TF V+IF +K+ AH+++I+FGL +KA+ELHG+LTQ QRL+AL+ FR+ VD+L+
Sbjct: 437 KRTFKGGVLIFFRSKKLAHQMRIVFGLLGMKASELHGDLTQEQRLQALQAFREGSVDYLM 496
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+A+RGLDI G+ TVINY P + Y+HRVGRTARAG++G +VT V + DR +LKA
Sbjct: 497 ATDLASRGLDIKGIDTVINYDMPGQVAQYLHRVGRTARAGKKGRSVTLVGEADRKILKAA 556
Query: 359 AKRAGS--KLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENM 416
K A +++ R V +++ KWSK + +++D++A +LQEE+EE+ LR+AEME K +N+
Sbjct: 557 IKHASGEDQVRHRHVPPEAVQKWSKKLGELKDEIAGVLQEEKEEKQLRQAEMELRKGQNL 616
Query: 417 IAHKEEIFARPKRTWFVTEKEKKLAVKADKAS 448
I H+EEI +RP RTWF +EKEK+ + + K S
Sbjct: 617 IEHEEEIKSRPARTWFQSEKEKQKSKEVSKES 648
>gi|390604335|gb|EIN13726.1| DEAD-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 785
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 262/502 (52%), Positives = 353/502 (70%), Gaps = 9/502 (1%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ +NLSRP+L+A +L + KPTPIQAA IP+AL G+D+ G+A+TGSGKTAAF +P LERL
Sbjct: 201 LSMNLSRPILKAITSLSFHKPTPIQAATIPVALLGKDVVGNAVTGSGKTAAFIIPMLERL 260
Query: 61 LYR--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
LYR K+ A R L+L PTREL VQ + K+A +TDIR CL VGGLS K QE ALRS
Sbjct: 261 LYRDRAKKSAATRCLVLVPTRELGVQCFEVGTKLATYTDIRFCLAVGGLSVKSQEAALRS 320
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
PD+V+ATPGR+IDHLRNS S +LD L +L+LDEADR+L GF+ E+ E+++ CPK RQT
Sbjct: 321 KPDVVIATPGRLIDHLRNSPSFNLDALDILVLDEADRMLSDGFADELAEIIKSCPKSRQT 380
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
MLFSAT+T+ VDEL+K+SL KP+RL DP L +E VR+R +E + A+L++LC
Sbjct: 381 MLFSATMTDSVDELVKMSLDKPVRLFVDPKRSTAKGLIQEFVRVRAGKESERSAILVALC 440
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+TF S VIIF +K+ AH+++I+F L +K AELHG+LTQ QRL+AL+ FR VDFL+
Sbjct: 441 KRTFKSGVIIFFRSKKLAHQMRIVFSLLYMKCAELHGDLTQEQRLKALQQFRDGSVDFLM 500
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+A+RGLDI GV VINY P L Y+HRVGRTARAG++G +VT V + DR +LKA
Sbjct: 501 ATDLASRGLDIKGVDIVINYDMPGQLAQYLHRVGRTARAGKKGRSVTLVGEADRKMLKAA 560
Query: 359 AKRAGS--KLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENM 416
K +++ RIV ++I+KWS+ +E ++ ++A +L+EE+EE+ +R+AEME K ENM
Sbjct: 561 IKHGAGDDQVRHRIVPSEAISKWSEKLELLKKEIAEVLEEEKEEKQMRQAEMELKKGENM 620
Query: 417 IAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKR 476
+ H EEI++RP RTWF + K+K A K E G S ++ ED K KR
Sbjct: 621 MEHSEEIYSRPARTWFQSAKDKAKAEAVSKQQYETGFPSTATAKVKRKDED-----KPKR 675
Query: 477 EREKNLPRKERRKLEAAREMLE 498
++ L R+ +R+ A E E
Sbjct: 676 DKFSGLTRRAKRRKMAMEEETE 697
>gi|426201453|gb|EKV51376.1| hypothetical protein AGABI2DRAFT_114110 [Agaricus bisporus var.
bisporus H97]
Length = 754
Score = 510 bits (1313), Expect = e-141, Method: Compositional matrix adjust.
Identities = 243/456 (53%), Positives = 337/456 (73%), Gaps = 4/456 (0%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ +NLSRPL++A LG++KPTPIQA+ IP+AL G+D+ G+A+TGSGKTAAF +P +ERL
Sbjct: 197 LSMNLSRPLMKAVTNLGFNKPTPIQASTIPVALLGKDVVGNAVTGSGKTAAFMIPMIERL 256
Query: 61 LYRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
L+R K + AIR L+L PTRELAVQ + + K++ TDIR CLVVGGLS K QE LRS
Sbjct: 257 LFREKGKKAAAIRCLVLVPTRELAVQCYEVGTKLSIHTDIRLCLVVGGLSLKSQEADLRS 316
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
PDIV+ATPGR+IDH+RNS S LD L +L++DEADR+L GFS E+ E+++ CP+ RQT
Sbjct: 317 RPDIVIATPGRLIDHIRNSASFSLDALDILVIDEADRILSEGFSDELTEIIKSCPRSRQT 376
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
MLFSAT+T+ VDEL+++SL KP+RL DP L +E VR+R +E + A+L++LC
Sbjct: 377 MLFSATMTDSVDELVRVSLEKPVRLFVDPKRTTARGLIQEFVRVRAGKEAERSAMLVTLC 436
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+TF +VI+F +K+ AH+++I+F L +K ELHG+L+Q QRL AL+LFR VDFL+
Sbjct: 437 RRTFKRRVIVFLRSKKLAHQMRIVFSLLGMKCEELHGDLSQEQRLRALQLFRDDAVDFLM 496
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+A+RGLDI GV+TVINY P L Y+HRVGRTARAGR G AVT V + DR +L+A
Sbjct: 497 ATDLASRGLDIKGVETVINYDMPTQLAQYLHRVGRTARAGRGGRAVTLVGEADRKMLRAA 556
Query: 359 AKRAGS--KLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENM 416
K A + +++ R++ +++ WS + +++D++ +L+EE+EE+ +RKAEME K +N+
Sbjct: 557 IKHAAAEDQVRHRVLPTEALQHWSDKLVELKDEITHVLREEKEEKQMRKAEMELKKGQNL 616
Query: 417 IAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKG 452
I H+ EIF+RP RTWF T +EKK + K E+G
Sbjct: 617 IEHQNEIFSRPARTWFQTGQEKKASQTISKNEHEQG 652
>gi|395334307|gb|EJF66683.1| DEAD-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 773
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 253/506 (50%), Positives = 357/506 (70%), Gaps = 15/506 (2%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ +NLSRP++++ LG++ PTPIQAA IP+AL G+D+ G+A+TGSGKTAAF +P LERL
Sbjct: 190 LSMNLSRPIIKSLTTLGFTTPTPIQAATIPVALLGKDVVGNAVTGSGKTAAFIIPMLERL 249
Query: 61 LYRP--KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
+YR K+ A R L+L PTREL VQ + K+A TDIR LVVGGLS K QE LR+
Sbjct: 250 MYRDRGKKAAATRCLVLVPTRELGVQCFEVGTKLAAHTDIRFALVVGGLSIKAQEANLRT 309
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
PD+V+ATPGR+IDH+RNS + LD L +L+LDEADR+LE GF+ E+ E+++ CP RQT
Sbjct: 310 RPDVVIATPGRLIDHIRNSPTFTLDALDILVLDEADRMLEDGFADELTEIIKSCPTSRQT 369
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
MLFSAT+T+ VDEL+++SL KP+RL DP L +E VR+R +E + A+L++LC
Sbjct: 370 MLFSATMTDSVDELVRMSLNKPVRLFVDPKRATARGLLQEFVRVRAGKEAERSALLVALC 429
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+TF S+VIIF +K+ AH+++I+F L +K ELHG+L+Q QRL+AL+ FR HVD+L+
Sbjct: 430 KRTFKSRVIIFFRSKKLAHQMRIVFRLLDMKCDELHGDLSQEQRLKALQQFRDGHVDYLM 489
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+A+RGLDI G++TVINY P L Y+HRVGRTARAG++G +VT V + DR +LKA
Sbjct: 490 ATDLASRGLDIKGIETVINYDMPGQLAQYLHRVGRTARAGKKGRSVTLVGEADRKMLKAA 549
Query: 359 AKRAGS---KLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAEN 415
K + +++ R V ++ ++KW++ ++ ++ +++ ILQEE+EE+ LR+AEME K +N
Sbjct: 550 IKHSSGGEDQIRHRQVPQEVVSKWAQKLDSLKQEISEILQEEKEEKQLRQAEMELKKGQN 609
Query: 416 MIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRK 475
MI H+ EIF+RP RTWF T KEK A K E G +G + S + A+ K K
Sbjct: 610 MIEHEAEIFSRPARTWFQTGKEKAKAEALSKQQYEAGFDAGKKGKSKEPAQ-----TKPK 664
Query: 476 REREKNLPRKERRKLEAAREMLEDED 501
R++ L R+ +R R+M +ED
Sbjct: 665 RDKFAGLSRRAKR-----RKMAMEED 685
>gi|449551073|gb|EMD42037.1| hypothetical protein CERSUDRAFT_129370 [Ceriporiopsis subvermispora
B]
Length = 794
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 256/508 (50%), Positives = 355/508 (69%), Gaps = 13/508 (2%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ +NLSRP++++ LG++ PTPIQAA IP+AL G+D+ G+A+TGSGKTAAF +P LERL
Sbjct: 211 LSMNLSRPIIKSLTTLGFNTPTPIQAATIPVALLGKDVVGNAVTGSGKTAAFIIPMLERL 270
Query: 61 LYRP--KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
+YR K+ A R L+L PTRELAVQ + K+A TDIR CLVVGGLS K QE +LR+
Sbjct: 271 MYRDRGKKAAATRCLVLVPTRELAVQCFEVGTKLAAHTDIRSCLVVGGLSLKAQEASLRT 330
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
PD+V+ATPGR+IDHLRNS + L+ L +L+LDEADR+LE GFS E+ E+++ CP RQT
Sbjct: 331 RPDVVIATPGRLIDHLRNSPTFTLEALDILVLDEADRMLEDGFSDELTEIIKSCPTSRQT 390
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
MLFSAT+T+ VDEL+++SL KP+RL DP L +E VR+R +E + A+L +LC
Sbjct: 391 MLFSATMTDTVDELVRMSLNKPVRLFVDPKRTTARGLVQEFVRVRAGKEAERSALLAALC 450
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+TF +K IIF +K+ AH+++I+F L +K+ ELHG+L+Q QRL+AL+ FR VD+L+
Sbjct: 451 KRTFRTKSIIFFRSKKLAHQMRIVFSLLGMKSDELHGDLSQEQRLKALQQFRDGTVDYLM 510
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+A+RGLDI G++TVINY P L Y+HRVGRTARAG++G +VT V + DR +LKA
Sbjct: 511 ATDLASRGLDIKGIETVINYDMPGQLALYLHRVGRTARAGKKGRSVTLVGEADRKMLKAA 570
Query: 359 AKRAGS--KLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENM 416
K A +++ R V ++I KWS+ + ++++++ ILQEE+EE+ R+AEME K +N+
Sbjct: 571 IKHAAGEDQVRHRQVPAEAIAKWSEKLASLKNEISEILQEEKEEKQFRQAEMELKKGQNL 630
Query: 417 IAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKR 476
I H+EEI+++P RTWF T KEK A K E G T A E +K KR
Sbjct: 631 IEHEEEIYSKPARTWFQTGKEKAKAEAVSKQQYEAG------YTPAGGKEKKVAGDKPKR 684
Query: 477 EREKNLPRKERRKLEAAREMLEDEDQVD 504
++ L R+ +R+ A M EDE D
Sbjct: 685 DKYAGLSRRVKRRKMA---MEEDEGAAD 709
>gi|164660112|ref|XP_001731179.1| hypothetical protein MGL_1362 [Malassezia globosa CBS 7966]
gi|159105079|gb|EDP43965.1| hypothetical protein MGL_1362 [Malassezia globosa CBS 7966]
Length = 638
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 255/501 (50%), Positives = 348/501 (69%), Gaps = 31/501 (6%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L+R LLR AL +S+PTPIQA IP+AL G+DI A+TGSGKTAAF +P +ERL Y
Sbjct: 82 LQLNRALLRGLAALNFSRPTPIQARTIPIALAGKDIVAGAVTGSGKTAAFLIPIMERLSY 141
Query: 63 RPKRIPAI--RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
R + RV++L PTRELA+Q HS+ + + +F ++R CL VGGLS K+QE L++ P
Sbjct: 142 RQRSADDAKSRVVVLCPTRELAIQCHSVAQALGKFMNVRFCLCVGGLSLKLQEAELKTRP 201
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D+++ATPGR+IDH+RNS S ++D+ +L++DEADR+LE GF E++E+VRLCPK+RQTML
Sbjct: 202 DVIIATPGRLIDHVRNSASFGMEDVEILVMDEADRMLEDGFEDELNEIVRLCPKQRQTML 261
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-----------RMREVN 229
FSAT+TEDVD+L++LSL P+RL DP S LT+E VR+R + + +
Sbjct: 262 FSATMTEDVDQLVRLSLRTPVRLFVDPKRSTASKLTQEFVRVRAQSRLTGHARQQAEDQH 321
Query: 230 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 289
+ A+L++LC +TF +VIIF +K+ AH+LKILFGL L AAELHG+L+Q QRL++L LF
Sbjct: 322 RAAILVTLCMRTFRDQVIIFVRSKKLAHQLKILFGLLGLSAAELHGDLSQEQRLQSLSLF 381
Query: 290 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 349
R VDFL+ATD+A+RG+DI GVQTVINY P L Y+HRVGRTARAGR+G AVT V +
Sbjct: 382 RDGKVDFLLATDLASRGIDIRGVQTVINYDMPAQLEPYLHRVGRTARAGRQGRAVTLVGE 441
Query: 350 NDRSLLKAIAKRA-GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEM 408
DR LLK + KR ++K R++ + + K S I ++ +V ILQEE+EER LR+AEM
Sbjct: 442 PDRRLLKTVLKRTPPEQVKHRLMPSEMVQKLSDTIASLKPEVEQILQEEKEERALRQAEM 501
Query: 409 EATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDL 468
E K ENM+AH++EI+ARP RTWF + EK K +V+ QQ +
Sbjct: 502 EVQKGENMMAHQDEIYARPARTWFQS---------------EKAKADAKQVSREQQ--NA 544
Query: 469 KIKEKRKREREKNLPRKERRK 489
K+ + R+R L R+++R
Sbjct: 545 KVDVSKARDRFAGLSRRKKRN 565
>gi|409083507|gb|EKM83864.1| hypothetical protein AGABI1DRAFT_117335, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 701
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 242/456 (53%), Positives = 337/456 (73%), Gaps = 4/456 (0%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ +NLSRPL++A LG++KPTPIQA+ IP+AL G+D+ G+A+TGSGKTAAF +P +ERL
Sbjct: 197 LSMNLSRPLMKAVTNLGFNKPTPIQASTIPVALLGKDVVGNAVTGSGKTAAFMIPMIERL 256
Query: 61 LYRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
L+R K + AIR L+L PTRELAVQ + + K++ TDIR CLVVGGLS K QE LRS
Sbjct: 257 LFREKGKKAAAIRCLVLVPTRELAVQCYEVGTKLSIHTDIRLCLVVGGLSLKSQEADLRS 316
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
PDIV+ATPGR+IDH+RNS S LD L +L++DEADR+L GFS E+ E+++ CP+ RQT
Sbjct: 317 RPDIVIATPGRLIDHIRNSASFSLDALDILVIDEADRILSEGFSDELTEIIKSCPRSRQT 376
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
MLFSAT+T+ VDEL+++SL KP+RL DP L +E VR+R +E + A+L++LC
Sbjct: 377 MLFSATMTDSVDELVRVSLEKPVRLFVDPKRTTARGLIQEFVRVRAGKEAERSAMLVTLC 436
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+TF +VI+F +K+ AH+++I+F L +K ELHG+L+Q QRL AL+LFR VDFL+
Sbjct: 437 RRTFKRRVIVFLRSKKLAHQMRIVFSLLGMKCEELHGDLSQEQRLRALQLFRDDAVDFLM 496
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+A+RGLDI GV+TVINY P L Y+HRVGRTARAGR G AVT V + DR +L+A
Sbjct: 497 ATDLASRGLDIKGVETVINYDMPTQLAQYLHRVGRTARAGRGGRAVTLVGEADRKMLRAA 556
Query: 359 AKRAGS--KLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENM 416
K A + +++ R++ +++ WS + +++D+++ +L+EE+EE+ + KAEME K +N+
Sbjct: 557 IKHAAAEDQVRHRVLPTEALQHWSDKLVELKDEISHVLREEKEEKQMLKAEMEVKKGQNL 616
Query: 417 IAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKG 452
I H+ EIF+RP RTWF T +EKK + K E+G
Sbjct: 617 IEHQNEIFSRPARTWFQTGQEKKASQTISKNEHEQG 652
>gi|353237187|emb|CCA69166.1| related to DRS1-RNA helicase of the DEAD box family [Piriformospora
indica DSM 11827]
Length = 767
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 256/507 (50%), Positives = 352/507 (69%), Gaps = 8/507 (1%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ +NLSRP++++ +L + PTPIQAA IP+AL G+DI G+A+TGSGKTAAF +P LERL
Sbjct: 179 LTMNLSRPIMKSLTSLSFHTPTPIQAATIPVALLGKDIVGNAVTGSGKTAAFMIPILERL 238
Query: 61 LYRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
LYR K A R L+L PTRELAVQ + K+A TDI+ LVVGGLS K QE LRS
Sbjct: 239 LYRQKGKNAAATRCLVLVPTRELAVQCFEVGTKLAAHTDIQMSLVVGGLSLKAQEATLRS 298
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
PD+V+ATPGR+IDHLRNS + +LD L VL+LDEADR+L GF+ E+ E+V+ CP+ RQT
Sbjct: 299 KPDLVIATPGRLIDHLRNSPTFNLDALDVLVLDEADRMLSDGFADELEEIVKSCPRSRQT 358
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
MLFSAT+T+ VDEL+K+SL KP+RL DP L +E VR++ RE + A+L++LC
Sbjct: 359 MLFSATMTDSVDELVKMSLNKPVRLFVDPKRATAKGLVQEFVRVKAGRESERAAILVTLC 418
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+TF +VIIF +K+ AH+++I+FGL ++A ELHG+LTQ QRL +L+ FR VD+L+
Sbjct: 419 KRTFRERVIIFFRSKKLAHQMRIMFGLLDMRADELHGDLTQEQRLTSLQAFRDGKVDYLM 478
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+A+RGLDI G++TVINY P L Y+HRVGRTARAG+ G +VT V + DR +LKA
Sbjct: 479 ATDLASRGLDIKGIETVINYDMPGQLAQYLHRVGRTARAGKNGRSVTLVGEADRKMLKAA 538
Query: 359 AKRAGS--KLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENM 416
K S K++ R+V + + KWS+ I ++D++ +L +E+E + +R+AEME K ENM
Sbjct: 539 IKHGSSEDKVRHRLVPAEVVEKWSEQIGSLQDEIQIVLDQEKEAKQMRQAEMELQKGENM 598
Query: 417 IAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKR 476
+ +++EIF+RP RTWF T KEK+ A + + E G G A + K K KR
Sbjct: 599 LKYEDEIFSRPARTWFQTSKEKEQAQEKSRRQYEAGLGDNK----AAKVVAGKATIKPKR 654
Query: 477 EREKNLPRKERRKLEAAREMLEDEDQV 503
++ L RK +R+ A E + +D V
Sbjct: 655 DKFAGLSRKAKRRKLAQEEDAQIKDSV 681
>gi|389751392|gb|EIM92465.1| DEAD-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 812
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 250/496 (50%), Positives = 355/496 (71%), Gaps = 10/496 (2%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ +NLSRP+L+A LG++ PTPIQAA IP+ L G+D+ G+A+TGSGKTAAF +P +ERL
Sbjct: 217 LTMNLSRPVLKALTTLGFNTPTPIQAATIPVGLLGKDVVGNAVTGSGKTAAFIIPMIERL 276
Query: 61 LYRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
LYR K + A R LIL PTRELAVQ + + +K+ TDI+ CL+VGGLS K QE ALR+
Sbjct: 277 LYRDKGKKAAATRCLILVPTRELAVQCYEVGKKLGTHTDIQFCLIVGGLSLKSQEVALRA 336
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
PD+V+ATPGR+IDHLRNS S LD L +L+LDEADR+L GF+ E+ E+++ CP RQT
Sbjct: 337 RPDVVIATPGRLIDHLRNSPSFTLDALDILVLDEADRMLSDGFADELTEIIQSCPTSRQT 396
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
MLFSAT+T+ VDEL+K+SL KP+RL DP L +E VR+R +E ++ A+L++LC
Sbjct: 397 MLFSATMTDSVDELVKMSLNKPVRLFVDPKRSTARGLVQEFVRVRAGKESDRSALLVALC 456
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+TF S V+IF +K+ AH+++I+F L + ELHG+L+Q QRL++L+LFR VD+L+
Sbjct: 457 KRTFKSGVLIFFRSKKLAHQVRIMFSLLGMSCEELHGDLSQEQRLKSLQLFRDGAVDYLM 516
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK-A 357
ATD+A+RGLDI G+ TVIN+ P L Y+HRVGRTARAG++G +VT V + DR +LK A
Sbjct: 517 ATDLASRGLDIKGIDTVINFDMPGQLAQYLHRVGRTARAGKKGRSVTLVGEADRKMLKAA 576
Query: 358 IAKRAGS-KLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENM 416
I AG+ +++ R V + + K+ K ++ ++ ++ ++Q+E+EE+ LRKAEME K +NM
Sbjct: 577 IKHSAGADQVRHRTVPPEIVAKYVKKLDSLKPEITGVMQDEKEEKHLRKAEMELQKGQNM 636
Query: 417 IAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIK-EKRK 475
I H++EI++RP RTWF + KEK+ A K+ E G + N A + +D + K K
Sbjct: 637 INHEDEIYSRPARTWFQSGKEKQKAADLSKSQYEAGYSAAN----AGKGKDAPVDTTKPK 692
Query: 476 REREKNLPRK-ERRKL 490
R++ L R+ +RRKL
Sbjct: 693 RDKFSGLSRRVKRRKL 708
>gi|298706016|emb|CBJ29130.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 944
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 246/440 (55%), Positives = 315/440 (71%), Gaps = 3/440 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+LN+SRPLLRA EA+GY PT +Q +P AL GRD+C SA TGSGKTAAF LP LERLL
Sbjct: 311 QLNISRPLLRAVEAMGYVTPTSVQQRAVPFALAGRDVCASATTGSGKTAAFLLPILERLL 370
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLST-KMQETALRSMP 120
YRPK++ RV+I+TPTREL VQ+HSM ++QFTDI C LVVGG K QE LR+ P
Sbjct: 371 YRPKKVAVTRVMIITPTRELGVQIHSMCRSLSQFTDIACALVVGGNKNLKAQEAELRARP 430
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ TPGRM+DHL NS SV +DD+ +L+LDEADRLLELGF E+ ELV+ CP RQT+L
Sbjct: 431 DIVICTPGRMVDHLTNSASVHMDDVEILVLDEADRLLELGFQEEVAELVKSCPIGRQTLL 490
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+ VD+L L+L KP+R+ A P P L +E VRIR+ RE ++EA+LLSL ++
Sbjct: 491 FSATMNTKVDDLASLALNKPVRVKASPMNSAPQRLVQEFVRIRQSREQDREAILLSLLTR 550
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF +K I+F TK AHRL I+ G+A ++AAELHGNL QRLEAL+ F+ V L+AT
Sbjct: 551 TFKTKTIVFFDTKILAHRLNIVLGIAGIRAAELHGNLAMTQRLEALDRFKSGDVTVLVAT 610
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARGLDI GV TVIN+ PR SY+HRVGRTARAG G +VT + ++ R ++K + K
Sbjct: 611 DLAARGLDITGVHTVINFEMPRSADSYIHRVGRTARAGCGGRSVTLIGESRRIVMKEVLK 670
Query: 361 RAGS--KLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 418
G ++KSR V + +I + IE ME V AIL EE+ E+ R A MEA +A N++
Sbjct: 671 TQGEGVEIKSRAVPQSAIDHFRSKIEGMEASVKAILTEEKVEKEERCAMMEADRAVNLVE 730
Query: 419 HKEEIFARPKRTWFVTEKEK 438
H++EI ARP R W V+++ K
Sbjct: 731 HQKEIHARPARQWIVSQQRK 750
>gi|402077170|gb|EJT72519.1| ATP-dependent RNA helicase DRS1 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 827
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 238/450 (52%), Positives = 322/450 (71%), Gaps = 3/450 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRP+LR ++G+ KPTPIQA IP+AL G+D+ G A TGSGKT AF +P LERLLY
Sbjct: 288 MSLSRPILRGLASVGFGKPTPIQAKAIPMALMGKDVVGGAQTGSGKTGAFMVPILERLLY 347
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK++P RV++LTPTRELA+Q H++ K+A TDI+ CL VGGLS K+QE LR PD+
Sbjct: 348 RPKKVPTSRVVVLTPTRELAIQCHAVAIKLASHTDIKFCLAVGGLSLKVQEAELRLRPDV 407
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D + +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 408 IIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFS 467
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD LI+ L KP+R+ D K TL +E VR+R RE + L+ LC K +
Sbjct: 468 ATMTSSVDTLIRAGLNKPVRIMVDSQKKTVGTLVQEFVRLRPGREEKRMGYLVHLCKKLY 527
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T +VIIF K+ AH +I+FGL L AELHG++ Q QR++++E FR V FL+ATD+
Sbjct: 528 TERVIIFFRQKKIAHHARIIFGLLGLSCAELHGSMNQTQRIQSVEDFRDGKVSFLLATDL 587
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV TVINY P+ L YVHRVGRTARAGR G AVT + DR ++KA K
Sbjct: 588 ASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGVAVTLAAEPDRKVVKAAVKAG 647
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SRI+ W ++++E +V A++QEE+EE++L +A+M+ K ENM+ H
Sbjct: 648 KAQGAKISSRIIEAADADGWQDKVDELEGEVEAVMQEEKEEKVLWQADMQVRKGENMMRH 707
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKADKASI 449
++EI ARP+RTWF TEK+KK A +A +A +
Sbjct: 708 EDEIKARPRRTWFETEKDKKAAREAGRAEL 737
>gi|319411502|emb|CBQ73546.1| related to DRS1-RNA helicase of the DEAD box family [Sporisorium
reilianum SRZ2]
Length = 932
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 271/560 (48%), Positives = 365/560 (65%), Gaps = 50/560 (8%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+LSRP+LRA +L + KPTPIQ+ IP+AL G+DI A+TGSGKTAAF +PTLERL +
Sbjct: 338 FSLSRPVLRALSSLSFHKPTPIQSRTIPIALAGKDIVAGAVTGSGKTAAFMIPTLERLTW 397
Query: 63 RPK---RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
R K + RVLIL PTRELA+Q +S+ + IA+FTDIR CL VGGLS K QE L+
Sbjct: 398 RAKGRAQEAKTRVLILAPTRELAIQCYSVGKSIAKFTDIRFCLCVGGLSVKSQEAELKLR 457
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK-RRQT 178
P++V+ATPGR+IDH+RNS S LDD+ +L++DEADR+LE GF+ E++E+V+ CPK RQT
Sbjct: 458 PEVVIATPGRLIDHVRNSASFTLDDVEILVMDEADRMLEDGFADELNEIVKSCPKGARQT 517
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR--------------- 223
MLFSAT+T+DV++L++LSL +P+RL DP L +E VR+R
Sbjct: 518 MLFSATMTDDVEQLVRLSLKRPVRLFVDPKRTTAKKLIQEFVRVRGSGPGGVAGADGLAG 577
Query: 224 ------------RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAA 271
R + + A+LL+LC++TFTS+VIIF +K+ AH+LKI+FGL L A
Sbjct: 578 VGDEPSTSTVGKRSEDAQRPALLLALCTRTFTSQVIIFVRSKKLAHQLKIVFGLLGLSAG 637
Query: 272 ELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRV 331
ELHG+L+Q QR++AL FR VDFL+ATD+A+RGLDI GVQTVINY P +Y+HRV
Sbjct: 638 ELHGDLSQEQRIDALTDFRDGKVDFLLATDLASRGLDIKGVQTVINYDMPGQFEAYLHRV 697
Query: 332 GRTARAGREGYAVTFVTDNDRSLLK-AIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQV 390
GRTARAGR G AVT V + DR +LK AI K + ++K RI+ +K + +EQ++ +V
Sbjct: 698 GRTARAGRNGRAVTLVGEADRRMLKLAIKKSSAEQIKHRIIPAAVASKMLETLEQLKPEV 757
Query: 391 AAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIE 450
A+L+EE+EE+ LR AEME K ENM AH +EIFARPKRTWF T +K+ A KA E
Sbjct: 758 DAVLREEKEEKALRIAEMELKKGENMAAHADEIFARPKRTWFQTGADKQQAALVSKAQYE 817
Query: 451 KGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREMLEDEDQVDKLQGSG 510
+ D K K R++ L RK+RR +M+ DE + ++ + S
Sbjct: 818 -------------ASMDAAKKGKEGRDKYAGLSRKKRRS-----KMMRDEIERERKEASA 859
Query: 511 KDKKEKAGISMVDLAYRRAK 530
+ A ++ R AK
Sbjct: 860 SGGAKTASGGSMESGIRAAK 879
>gi|302695203|ref|XP_003037280.1| hypothetical protein SCHCODRAFT_73122 [Schizophyllum commune H4-8]
gi|300110977|gb|EFJ02378.1| hypothetical protein SCHCODRAFT_73122 [Schizophyllum commune H4-8]
Length = 771
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 259/508 (50%), Positives = 359/508 (70%), Gaps = 13/508 (2%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ +NLSRP+L+A LG++KPTPIQAA IP+AL G+D+ G+A+TGSGKTAAF +P LERL
Sbjct: 182 LTMNLSRPILKALTTLGFTKPTPIQAATIPVALLGKDVVGNAVTGSGKTAAFTIPMLERL 241
Query: 61 LYRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
LYR K + A R L+L PTRELAVQ + + +K+A TDI L+VGGLS K QE LR+
Sbjct: 242 LYREKGKKAAATRCLVLVPTRELAVQCYEVGKKLAAHTDIEVALIVGGLSLKSQEATLRA 301
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
PDIV+ATPGR+IDH+ NS S LD+L VL+LDEADR+L GF+ E+ E+++ CPK RQT
Sbjct: 302 RPDIVIATPGRLIDHIHNSPSFTLDNLDVLVLDEADRMLSDGFADELTEIIKACPKSRQT 361
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
MLFSAT+T+ VDEL+++SL KP+RL DP L +E VR+R RE + +L++LC
Sbjct: 362 MLFSATMTDSVDELVRMSLDKPVRLFVDPKRSTAKGLIQEFVRVRAGREKERSPLLVALC 421
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
++TF ++VIIF +K+ AH+L+I+FGL LK ELHG+L+Q QRL AL+ FR VD+L+
Sbjct: 422 TRTFKTRVIIFVRSKKLAHQLRIVFGLVGLKCGELHGDLSQEQRLNALQQFRDGTVDYLM 481
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+A+RGLDI GV+TVINY P L Y+HRVGRTARAG++G +VT V + DR +LKA
Sbjct: 482 ATDLASRGLDIKGVETVINYDMPGQLAQYLHRVGRTARAGKKGRSVTLVGEGDRKMLKAA 541
Query: 359 AKRAGS--KLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENM 416
K + +++ R V + + KW++ +E ++D+++ IL+EE+EE+ +++AEME K +NM
Sbjct: 542 IKHSTGQDQIRHRTVPPEVVAKWTEKLEGLKDEISEILKEEKEEKQIQQAEMELRKGQNM 601
Query: 417 IAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKR 476
I H++EIF+RP RTWF T KEK A K E G S + A++ K KR
Sbjct: 602 IEHEKEIFSRPARTWFQTGKEKASAEAVSKEQYENGLDMAKAPKSKKGADE----PKPKR 657
Query: 477 EREKNLPRKERRKLEAAREMLEDEDQVD 504
++ L RK +R R++ +ED+ D
Sbjct: 658 DKFSGLSRKAKR-----RKLANEEDEAD 680
>gi|322692214|gb|EFY84155.1| dependent RNA helicase drs-1 [Metarhizium acridum CQMa 102]
Length = 780
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 248/463 (53%), Positives = 326/463 (70%), Gaps = 9/463 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRP+LR A+G++KPTPIQA IP+AL G+D+ G A+TGSGKT AF +P LERLL+
Sbjct: 258 MSLSRPILRGLAAVGFTKPTPIQAKTIPIALMGKDLVGGAVTGSGKTGAFFVPILERLLF 317
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK+IP RV++LTPTRELA+Q H + K+A++TDI+ L VGGLS K QE LR PDI
Sbjct: 318 RPKKIPTTRVVVLTPTRELAMQCHDVGTKLARYTDIKFSLAVGGLSLKAQEVELRLRPDI 377
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+VATPGR IDH+RNS S ++D + +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 378 IVATPGRFIDHMRNSASFNVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFS 437
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD LI+ L KP+RL D K +TL +E VR+R RE + L LC +
Sbjct: 438 ATMTSTVDRLIRAGLNKPVRLMVDSQKKTVTTLVQEFVRLRPGREDKRMGYLAYLCKTFY 497
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+VIIF K+ AHR +I+FGL L AELHG++ Q+QR+ ++E FR V +L+ATD+
Sbjct: 498 HERVIIFFRQKKEAHRARIIFGLLGLSCAELHGSMNQSQRISSVEAFRDGKVSYLLATDL 557
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV TVINY P+ L YVHRVGRTARAGR+G AVT + DR ++KA K
Sbjct: 558 ASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRKGTAVTLAAEGDRKVVKAAVKAG 617
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SRI+A K + I+ MED++ I+QEE+EER L +AEM+ K EN+I H
Sbjct: 618 KAQGAKITSRIIAPADADKLQEEIDGMEDEIDEIMQEEKEERQLAQAEMQVKKGENLIEH 677
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKADKASIE------KGKGSG 456
+ EI +RPKRTWF TE +KK A +A K + K KGSG
Sbjct: 678 EAEIKSRPKRTWFETEHDKKKAKQAGKDELNGLRESLKKKGSG 720
>gi|336372365|gb|EGO00704.1| hypothetical protein SERLA73DRAFT_105076 [Serpula lacrymans var.
lacrymans S7.3]
Length = 681
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 249/505 (49%), Positives = 351/505 (69%), Gaps = 17/505 (3%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ +NLSRP+++A +G KPTPIQAA +P+AL G+D+ G A+TGSGKTAAF +P +ERL
Sbjct: 189 LTMNLSRPIIKALTTMGLHKPTPIQAAAVPVALLGKDVVGGAVTGSGKTAAFTIPIIERL 248
Query: 61 LYRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
LYR K A R L++ PTRELAVQ + ++A TD+R CLVVGGLS K QE ALRS
Sbjct: 249 LYRDKGKNAAATRCLVVVPTRELAVQCFEVGTRMAGHTDVRFCLVVGGLSLKSQEAALRS 308
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
PD+++ATPGR+IDHL NS S LD L +L+LDEADR+LE GF+ E+ E+V+ CP RQT
Sbjct: 309 RPDVLIATPGRLIDHLHNSPSFTLDALDILVLDEADRMLEDGFADELTEIVKACPVSRQT 368
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
MLFSAT+T+ VD+LI+LSLTKP+R+ D L +E VR+R +E + A+LL +C
Sbjct: 369 MLFSATMTDSVDKLIRLSLTKPVRIFVDAKRSMAKGLVQEFVRVRPEKEKERPALLLCIC 428
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+TF ++VI+F +K+ AH+++I+FGL +K ELHG+L+Q QRL+AL+ FR VD+L+
Sbjct: 429 KRTFKTRVIVFFRSKKLAHQMRIVFGLLDMKCDELHGDLSQEQRLKALQAFRDGSVDYLM 488
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+A+RGLDI G++TVIN+ P L Y+HRVGRTARAG+ G +VTFV + DR +L+A+
Sbjct: 489 ATDLASRGLDIKGIETVINFDMPSQLAQYLHRVGRTARAGKTGRSVTFVGEADRKMLRAV 548
Query: 359 AKRAGSK--LKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENM 416
K + + ++ R+V ++KW++ EQ++++V+ IL+EE+EE+ LR+AEME K +NM
Sbjct: 549 VKHSAGEDSVRHRVVPADVVSKWAQKFEQVKEEVSVILKEEKEEKQLRQAEMELKKGQNM 608
Query: 417 IAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKR 476
I H++EI++RP RTWF T +EK A + G + A Q KR
Sbjct: 609 IEHEKEIYSRPARTWFQTGQEKNKAAGRTPGRHKANSGGKQKPKDAAQPP--------KR 660
Query: 477 EREKNLPRKERRKLEAAREMLEDED 501
++ L RK +R R+M +ED
Sbjct: 661 DKYAGLSRKAKR-----RKMAMEED 680
>gi|388854481|emb|CCF51868.1| related to DRS1-RNA helicase of the DEAD box family [Ustilago
hordei]
Length = 935
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 269/549 (48%), Positives = 356/549 (64%), Gaps = 53/549 (9%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
LSRPLLRA L + KPTPIQ+ IP+AL G+DI A+TGSGKTAAF +PT+ERL +
Sbjct: 331 FQLSRPLLRALTTLSFHKPTPIQSRTIPIALAGKDIVAGAVTGSGKTAAFMIPTIERLTW 390
Query: 63 RPK-RIP---AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
R K R P RVLIL PTRELA+Q +S+ + IA+FTDIR CL VGGLS K QE L+
Sbjct: 391 RAKSRTPLQAKSRVLILAPTRELAIQCYSVGKNIAKFTDIRFCLCVGGLSVKSQEAELKL 450
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK-RRQ 177
P++V+ATPGR+IDH+RNS S LDD+ +L++DEADR+L+ GF+ E++E+V+ CPK RQ
Sbjct: 451 RPEVVIATPGRLIDHVRNSASFTLDDIEILVMDEADRMLQDGFADELNEIVKSCPKGARQ 510
Query: 178 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-------------- 223
TMLFSAT+T+DV++L++LSL +P+RL DP L +E VR+R
Sbjct: 511 TMLFSATMTDDVEQLVRLSLKRPVRLFVDPKRTTAKKLVQEFVRVRGTASAGVAGTVADE 570
Query: 224 --------------------RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILF 263
+ + + A+LL+LC++TFTS+VIIF +K+ AH+LKI+F
Sbjct: 571 APSTSNAETSSAETSSGGGRKSEDAQRPALLLALCTRTFTSQVIIFVRSKKLAHQLKIVF 630
Query: 264 GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD 323
GL L A ELHG+L+Q QR++AL FR VDFLIATD+A+RGLDI GVQTVINY P
Sbjct: 631 GLLGLSAGELHGDLSQEQRIDALTAFRDGKVDFLIATDLASRGLDIKGVQTVINYDMPGQ 690
Query: 324 LTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK-AIAKRAGSKLKSRIVAEQSITKWSKI 382
+Y+HRVGRTARAGR G AVT V + DR +LK AI K ++K RI+ K
Sbjct: 691 FEAYLHRVGRTARAGRNGRAVTLVGEADRRMLKLAIKKSTAEQIKHRIIPAPVACKMLAT 750
Query: 383 IEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAV 442
+E+++ QV A+L EE+EER LR AEM+ K ENMI H +EIF+RPKRTWF T +K A
Sbjct: 751 LEELKPQVDAVLHEEKEERALRIAEMQLKKGENMIRHADEIFSRPKRTWFQTSADKTQAA 810
Query: 443 KADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREMLEDEDQ 502
+ KAS E A D K + K + ++ L RK+RR + ++ +E+E +
Sbjct: 811 EVSKASYE-----------ATMTSD-KNRNKERSDQYAGLSRKKRRS-KMMKQEIENERK 857
Query: 503 VDKLQGSGK 511
KL K
Sbjct: 858 QAKLSAGAK 866
>gi|66812836|ref|XP_640597.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4]
gi|74897154|sp|Q54TJ4.1|DDX27_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx27; AltName:
Full=DEAD box protein 27
gi|60468614|gb|EAL66617.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4]
Length = 783
Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust.
Identities = 254/493 (51%), Positives = 347/493 (70%), Gaps = 8/493 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL+LSRPLL+A + LG+S+PTPIQA IPLAL G+DI SA TGSGKTAAF LP LERLL
Sbjct: 194 ELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLERLL 253
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+R AIRVLIL PTRELA+Q S++E +AQF++I CL+VGGLS K QE LR PD
Sbjct: 254 FRDSEYRAIRVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELRKSPD 313
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+V+ATPGR+IDHL N+ + LDDL +LILDEADRLL++GF EI+++V CP RQTMLF
Sbjct: 314 VVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTNRQTMLF 373
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SATL ++V L KLSL +P+R+ D + STL +E V+I+ ++ A+LLSLC++
Sbjct: 374 SATLNDEVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQHLSDRPAILLSLCTRV 433
Query: 242 FT-SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
F IIF +K+ HRL+I+FGL+ LKAAELHGNL+Q QR ++L+ FR V++L+A+
Sbjct: 434 FNQGGTIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGQVNYLLAS 493
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDIIGV+TVINY P ++ +Y+HRVGRTARAG +G + +F+TDNDR LLK I
Sbjct: 494 DVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKDIVT 553
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
+A +K KSR V++ ++ W IE++ + + +I++EE +E LRKAE KAE +I++
Sbjct: 554 KARNKAKSRSVSQDNVNFWRNRIEELTEDIKSIVREEMKEADLRKAEKTLDKAEKIISNA 613
Query: 421 EEIFARPKRTWFVTEKEK---KLAVKADKASIEKGK--GSGNEVTSAQQAEDLKIKEKRK 475
+ PK W+ T++E+ K K + + GK + +VT +K K K+K
Sbjct: 614 DANVETPK-VWYKTKQEEDKSKELWKIENNIVNPGKKLKAPIDVTGVNNVPSIK-KLKQK 671
Query: 476 REREKNLPRKERR 488
++ L RK+RR
Sbjct: 672 KDPYYGLSRKQRR 684
>gi|412987541|emb|CCO20376.1| predicted protein [Bathycoccus prasinos]
Length = 843
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 250/439 (56%), Positives = 328/439 (74%), Gaps = 4/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L+LSRPL RACE LGY+ PTPIQAA IP+ALTGRD+CG A TGSGKTAAFALP LER+L
Sbjct: 214 DLHLSRPLCRACEKLGYATPTPIQAAIIPIALTGRDVCGRAQTGSGKTAAFALPLLERML 273
Query: 62 YRPKR-IPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+RPK + AI V+I+ PTRELAVQ MI+++ ++T+++ +VGGLS + Q ALR P
Sbjct: 274 HRPKNAVSAIHVVIMVPTRELAVQCAQMIQRLGEYTNVQVATIVGGLSMERQAAALRQRP 333
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
+IVVATPGR+IDH+RN+ S +D+A ++LDEADRLLE+GF EI E+VR P++RQT+L
Sbjct: 334 EIVVATPGRLIDHVRNTHSFGFEDVAAVVLDEADRLLEMGFLEEIKEIVRNMPRQRQTLL 393
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSATLT V+EL LS+ P RLSAD P TLTEE+V+I+ +EA LLSL S+
Sbjct: 394 FSATLTSAVEELASLSMRNPARLSADSLGTTPMTLTEEIVKIKPQFVAKKEAHLLSLLSR 453
Query: 241 TFTSK-VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ-HVDFLI 298
+F K I+F+ TK AHRLKI+ GL+ +KA ELHG++TQ QRL ALE FR ++
Sbjct: 454 SFKGKETIVFAKTKVQAHRLKIVLGLSNIKACELHGDMTQTQRLAALEDFRSNAETKIMV 513
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATDVAARGLDI V V++Y P+++ SY+HRVGRTARAGR+G A+TF+ + DR+L+K +
Sbjct: 514 ATDVAARGLDIASVDLVVSYDAPKNVASYLHRVGRTARAGRKGVAITFMEEYDRALVKTL 573
Query: 359 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 418
KR G KL+SRIV + +W + IE Q+ I +EER E+ ++KAEMEATKAENM+
Sbjct: 574 QKR-GQKLQSRIVPRDVVDEWHEKIEGYAAQIEEIEEEERAEKHMQKAEMEATKAENMLE 632
Query: 419 HKEEIFARPKRTWFVTEKE 437
H EI +RPK+TWF +E++
Sbjct: 633 HANEIKSRPKKTWFESERD 651
>gi|388580558|gb|EIM20872.1| DEAD-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 801
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 254/511 (49%), Positives = 348/511 (68%), Gaps = 15/511 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LSRP+L+A LG++ PTPIQ +P+AL G+D+ G A+TGSGKTAAF LP LERL+Y
Sbjct: 210 LGLSRPILKAISGLGFTHPTPIQKTVMPVALAGKDVVGQAVTGSGKTAAFILPVLERLMY 269
Query: 63 RPK---RIPAIRVLILTPTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRS 118
RPK + RVL+L PTRELA Q + + +++F DI CL VGGLS K+QE L+
Sbjct: 270 RPKTSSKGGETRVLVLCPTRELAQQCFEVGQSLSKFMGDISFCLCVGGLSLKLQEQQLKQ 329
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
PD+V+ATPGR+IDH+RNS S LD L +LI+DEADR+LE GF E+ E+V+ CPK RQT
Sbjct: 330 RPDVVIATPGRLIDHVRNSPSFTLDALDILIMDEADRMLEDGFKDELDEIVKECPKNRQT 389
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN---QEAVLL 235
MLFSAT+T+ VDEL++LSL KP+RL DP LT+E VRIR + + + A LL
Sbjct: 390 MLFSATMTDKVDELVRLSLNKPVRLFVDPKKSTAKGLTQEFVRIRSNSKNDLKERTATLL 449
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
SLC +TF + IIF +K AHR++I+FGL L A ELHG+L+Q QRL ALE F+ Q D
Sbjct: 450 SLCRRTFKQRTIIFFRSKALAHRMRIMFGLMELNAEELHGDLSQEQRLNALERFKNQKSD 509
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
+L+ATD+A+RGLDI GV+TVIN+ P + Y+HRVGRTARAG G +V+ + + DR +L
Sbjct: 510 YLLATDLASRGLDIKGVETVINFDLPNQIEIYLHRVGRTARAGTSGRSVSLIGETDRKML 569
Query: 356 KAIAKRAGSK----LKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEAT 411
K I KR+ ++ +K RIV ++ ++++E ++DQ+ IL+EE+E+R +R AEME
Sbjct: 570 KNIVKRSSAQSTDSIKHRIVPTDVLSDVAELVESLQDQIDEILKEEKEDRAIRVAEMELQ 629
Query: 412 KAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIK 471
K++NMI H++EI +RP RTWF +EKEKK + +A K G+ + + + L
Sbjct: 630 KSKNMIEHEDEIKSRPARTWFQSEKEKKDSKEAGKEQYNANFDKGDADKTKKTHDSL--- 686
Query: 472 EKRKREREKNLPRKERRKLEAAREMLEDEDQ 502
RK L RK+RRK E E+ D+++
Sbjct: 687 -GRKLNAFSGLSRKDRRKKEMKEELEADKNK 716
>gi|322703237|gb|EFY94849.1| ATP-dependent RNA helicase drs-1 [Metarhizium anisopliae ARSEF 23]
Length = 944
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 247/463 (53%), Positives = 327/463 (70%), Gaps = 9/463 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRP+LR A+G++KPTPIQA IP+AL G+D+ G A+TGSGKT AF +P LERLL+
Sbjct: 261 MSLSRPILRGLAAVGFTKPTPIQAKTIPIALMGKDVVGGAVTGSGKTGAFFVPILERLLF 320
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK+IP RV++LTPTRELA+Q H + K+A++TDI+ L VGGLS K QE LR PDI
Sbjct: 321 RPKKIPTTRVVVLTPTRELAMQCHDVGTKLARYTDIKFSLAVGGLSLKAQEVELRLRPDI 380
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+VATPGR IDH+RNS S ++D + +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 381 IVATPGRFIDHMRNSASFNVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFS 440
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD LI++ L KP+RL D K +TL +E VR+R RE + L LC +
Sbjct: 441 ATMTSTVDRLIRVGLNKPVRLMVDSQKKTVTTLVQEFVRLRPGREDKRMGYLAHLCKTFY 500
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+VIIF K+ AHR +I+FGL L AELHG++ Q+QR+ ++E FR V +L+ATD+
Sbjct: 501 HERVIIFFRQKKEAHRARIIFGLLGLSCAELHGSMNQSQRISSVEAFRDGKVSYLLATDL 560
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV TVINY P+ L YVHRVGRTARAGR+G AVT + DR ++KA K
Sbjct: 561 ASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRKGTAVTLAAEGDRKVVKAAVKAG 620
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR++A K + I+ MED++ I+QEE+EER L +AEM+ K EN+I H
Sbjct: 621 KAQGAKITSRVIAPADADKLQEEIDGMEDEIDEIMQEEKEERQLAQAEMQVKKGENLIEH 680
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKADKASIE------KGKGSG 456
+ EI +RPKRTWF TE +KK A +A K + K KGSG
Sbjct: 681 EAEIKSRPKRTWFETEHDKKKAKQAGKDELNGLRESLKKKGSG 723
>gi|443897915|dbj|GAC75254.1| ATP-dependent RNA helicase [Pseudozyma antarctica T-34]
Length = 909
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 265/543 (48%), Positives = 357/543 (65%), Gaps = 48/543 (8%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+LSRP+LRA +L + KPTPIQ+ IP+AL G+DI A+TGSGKTAAF +P +ERL +
Sbjct: 323 FSLSRPVLRALSSLSFHKPTPIQSRTIPIALAGKDIVAGAVTGSGKTAAFMIPAIERLTW 382
Query: 63 RPK---RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
R K + RVLIL PTRELA+Q +S+ + IA+FTDIR CL VGGLS K QE L+
Sbjct: 383 RAKGRAQEAKSRVLILAPTRELAIQCYSVGKSIAKFTDIRFCLCVGGLSVKSQEAELKLR 442
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK-RRQT 178
P++V+ATPGR+IDH+RNS S LDD+ +L++DEADR+LE GF+ E++E+V+ CPK RQT
Sbjct: 443 PEVVIATPGRLIDHVRNSASFTLDDIEILVMDEADRMLEDGFADELNEIVKSCPKGARQT 502
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR--------------- 223
MLFSAT+T+DV++L++LSL +P+RL DP L +E VR+R
Sbjct: 503 MLFSATMTDDVEQLVRLSLKRPVRLFVDPKRTTAKKLVQEFVRVRGTGTGGVAGADGLAG 562
Query: 224 --------------RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALK 269
R + + A+LL+LC++TFTS+VIIF +K+ AH+LKI+FGL L
Sbjct: 563 VGQEVSSSAPSGGKRSEDAQRPALLLALCTRTFTSQVIIFVRSKKLAHQLKIVFGLLGLS 622
Query: 270 AAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVH 329
A ELHG+L+Q QR++AL FR VDFLIATD+A+RGLDI GVQTVINY P +Y+H
Sbjct: 623 AGELHGDLSQEQRIDALTAFRDGKVDFLIATDLASRGLDIKGVQTVINYDMPGQFEAYLH 682
Query: 330 RVGRTARAGREGYAVTFVTDNDRSLLK-AIAKRAGSKLKSRIVAEQSITKWSKIIEQMED 388
RVGRTARAGR G AVT V + DR +LK AI K + ++K RI+ + K + +E+++
Sbjct: 683 RVGRTARAGRNGRAVTLVGEADRRMLKLAIKKSSADQIKHRIIPAEVAGKMLETLEELKP 742
Query: 389 QVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKAS 448
+V A+L+EE+EE+ LR AEME K ENM+AH +EIF RPKRTWF T +K A KA
Sbjct: 743 EVDAVLREEKEEKALRIAEMELKKGENMVAHADEIFGRPKRTWFQTGADKDKAATLSKAQ 802
Query: 449 IEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREMLEDEDQVDKLQG 508
E + K K+ R++ L RK+RR + R+ +E E+Q + G
Sbjct: 803 YE-------------ATMEAKKKDAPARDKYAGLSRKKRRS-KMMRDEIERENQEARASG 848
Query: 509 SGK 511
K
Sbjct: 849 GAK 851
>gi|328772256|gb|EGF82294.1| hypothetical protein BATDEDRAFT_34342 [Batrachochytrium
dendrobatidis JAM81]
Length = 741
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 242/436 (55%), Positives = 325/436 (74%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LSRP+L++ ALGY +PT IQA IPLAL GRDICGSA+TGSGKTAAF +P +ERLL+
Sbjct: 192 LQLSRPVLKSIAALGYVRPTDIQARAIPLALQGRDICGSAVTGSGKTAAFIIPIVERLLF 251
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK RVLIL PTREL VQ S+ I++FTDI CL VGGL TK QE LR PDI
Sbjct: 252 RPKNDATTRVLILVPTRELGVQCQSVAISISKFTDISTCLCVGGLPTKTQEAELRLRPDI 311
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR+IDH+ NS S LD + +L++DEADR+L+ GF AE++E+++ P+ RQTMLFS
Sbjct: 312 IIATPGRLIDHIHNSPSFFLDAIDILVIDEADRILDDGFDAELNEIIKHTPRTRQTMLFS 371
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T++VD+LIKLSL +P+RL D + K + L +E +R+R +E ++ A+L +LCS+T+
Sbjct: 372 ATMTDNVDDLIKLSLNRPVRLFVDQNTKLTNRLVQEFIRVRGHKETSRPAILAALCSRTY 431
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
TS+ I+F +K AAH +KI+FG LKAAELHGNLTQ QRLEALELFR++ V FL+ATD+
Sbjct: 432 TSETIVFFRSKAAAHHMKIIFGFLGLKAAELHGNLTQLQRLEALELFREKKVGFLLATDL 491
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV+TVINY P+ + YVHRVGRTAR G AV+ V + DR+LLK K
Sbjct: 492 ASRGLDISGVKTVINYDMPKSYSIYVHRVGRTARGDLAGRAVSLVGEADRALLKMAIKNT 551
Query: 363 GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEE 422
+K+RIV + K+ I+ +++D + I EE+EE+ L AE++ T+A+N++ H++E
Sbjct: 552 RDAVKNRIVPANVVEKYEGILAKLKDSIKEIYIEEKEEKELSSAELQITRAQNILGHQDE 611
Query: 423 IFARPKRTWFVTEKEK 438
I +RP RTWF +EKE+
Sbjct: 612 IMSRPARTWFQSEKER 627
>gi|255941704|ref|XP_002561621.1| Pc16g13220 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586244|emb|CAP93992.1| Pc16g13220 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 815
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/446 (53%), Positives = 325/446 (72%), Gaps = 5/446 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E NLSRP+LR A+G++ PTPIQ IP+AL G+DI GSA+TGSGKTAAF +P LERLL
Sbjct: 308 EFNLSRPILRGLAAVGFTDPTPIQRKAIPVALLGKDIVGSAVTGSGKTAAFIVPILERLL 367
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+RP+++P RV+IL PTRELAVQ +++ K+A FTD+ C +VGG S + QE L+ PD
Sbjct: 368 FRPRKVPTSRVVILMPTRELAVQCYNVSVKLATFTDVTFCQLVGGFSLREQENVLKKRPD 427
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLF
Sbjct: 428 VIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLF 487
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ +D+LI++ + +P+RL D STL +E VR+R RE + LL LC +
Sbjct: 488 SATMTDSIDKLIRVGMNRPVRLMVDSKKNTVSTLVQEFVRLRPGREDKRLGYLLHLCKEI 547
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
++ +VIIF K+ AHR++I+F L LKAAELHG+L+Q QR++++E FR V FL+ATD
Sbjct: 548 YSKRVIIFFRQKKEAHRVRIIFSLLGLKAAELHGSLSQEQRIKSVENFRDGKVAFLLATD 607
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++K +A R
Sbjct: 608 VASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKIVK-LAVR 666
Query: 362 A----GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 417
A G+K+ SR++ + W++ E+M D+VA ILQEE+ E+ L +AEM+ TK EN++
Sbjct: 667 AGKAQGAKIASRVIEQAVADSWAQKAEEMADEVAEILQEEKTEKQLSQAEMQFTKGENLM 726
Query: 418 AHKEEIFARPKRTWFVTEKEKKLAVK 443
H EI +RPKRTWF TEKEKK++ K
Sbjct: 727 KHGAEIMSRPKRTWFETEKEKKVSRK 752
>gi|406868092|gb|EKD21129.1| ATP-dependent RNA helicase DRS1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 820
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 231/450 (51%), Positives = 319/450 (70%), Gaps = 3/450 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LSRP+LR A+G+S PTPIQA IP+AL G+D+ G A+TGSGKTAAF +P LERLLY
Sbjct: 283 LGLSRPILRGLSAVGFSAPTPIQAKTIPMALQGKDVVGGAVTGSGKTAAFIVPVLERLLY 342
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK++P RV IL PTRELA+Q H++ K+A TDI+ CL VGGLS K+QE LR PD+
Sbjct: 343 RPKKVPTSRVAILMPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQEAELRLRPDV 402
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS+S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 403 IIATPGRFIDHMRNSVSFTVDTLEILVLDEADRMLEAGFADELNEILTTIPKSRQTMLFS 462
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT++ VD LI++ L +P+RL D + TL +E +R+R RE + LL LC+ +
Sbjct: 463 ATMSSSVDNLIRVGLNRPVRLLVDAQKQTVGTLVQEFIRLRPGRETKRMGYLLYLCANIY 522
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T +VI+F K+ AHR +++FGL+ LKA ELHG+++Q QR+ ++E FR FL+ATD+
Sbjct: 523 TDRVIVFFRQKKEAHRARVIFGLSGLKATELHGSMSQEQRINSVEAFRDGKASFLLATDL 582
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV TVINY P+ Y+HRVGRTARAGR+G A T + DR ++KA K
Sbjct: 583 ASRGLDIKGVDTVINYEAPQSHEIYLHRVGRTARAGRQGRACTLAAEPDRKIVKAAVKTG 642
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR++ +W+ ++ M+D++ IL EE+E++ L + EME K EN++AH
Sbjct: 643 RTQGAKIVSRVIEASEADEWAAKVDDMKDEIDEILIEEKEDKQLAQVEMEVRKGENIMAH 702
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKADKASI 449
EEI RP+RTWF +E++K A K +A +
Sbjct: 703 GEEIKGRPRRTWFESEQDKLSAKKVGRAEL 732
>gi|259488879|tpe|CBF88686.1| TPA: ATP-dependent RNA helicase (Drs1), putative (AFU_orthologue;
AFUA_1G14990) [Aspergillus nidulans FGSC A4]
Length = 814
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 247/501 (49%), Positives = 344/501 (68%), Gaps = 17/501 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E NLSRP+LR A+ ++ PTPIQ IP+AL G+DI GSA+TGSGKTAAF +P LERLL
Sbjct: 302 EFNLSRPILRGLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLL 361
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+RP+++P RV IL PTRELAVQ +++ K+A +TDI C +VGG S + QE L+ PD
Sbjct: 362 FRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKKRPD 421
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLF
Sbjct: 422 VIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLF 481
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ VD+LI++ L +P+RL D TL +E VR+R RE + LL LC +
Sbjct: 482 SATMTDSVDKLIRVGLNRPVRLMVDTKKNTAVTLVQEFVRLRPGREDKRLGYLLHLCKEV 541
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+T +VI+F K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR +V+FL+ATD
Sbjct: 542 YTGRVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFRDGNVNFLLATD 601
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+A+RGLDI GV+TVINY P+ YVHRVGRTARAGR G A T + DR ++KA K
Sbjct: 602 LASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKA 661
Query: 362 A---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 418
G+K+ SR+V W+ + ME+++ A+L+EE+ E+ L +AEM+ TK EN+I
Sbjct: 662 GKAQGAKIVSRVVDPSVADDWASKAKDMEEEIDAVLEEEKLEKQLAQAEMQVTKGENLIK 721
Query: 419 HKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRER 478
H+ EI +RPKRTWF TE+EK++A K A E+ + E +K+ K K+
Sbjct: 722 HEAEIKSRPKRTWFETEREKRVAKKIGAA----------ELNGPSKKEKVKLSNKDKKRL 771
Query: 479 EKNLPRKE----RRKLEAARE 495
+ R+E R+K +A RE
Sbjct: 772 DAAKLRQEEGLGRKKSKAERE 792
>gi|171685610|ref|XP_001907746.1| hypothetical protein [Podospora anserina S mat+]
gi|170942766|emb|CAP68419.1| unnamed protein product [Podospora anserina S mat+]
Length = 798
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 242/501 (48%), Positives = 343/501 (68%), Gaps = 21/501 (4%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+E++LSRP+L+ ++G++KPTPIQ+ IP+AL G+D+ G A+TGSGKT AF +P LERL
Sbjct: 276 LEMSLSRPILKGLNSVGFTKPTPIQSKTIPIALMGKDVVGGAVTGSGKTGAFLVPILERL 335
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
LYR K++ RV+IL PTRELA+Q H++ K+A TDI+ CL VGGLS K+QE LR P
Sbjct: 336 LYRSKKVATTRVVILAPTRELAIQCHAVGVKLASHTDIKFCLAVGGLSLKVQEQELRLRP 395
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D+V+ATPGR IDH+RNS S ++ + +L+LDEADR+LE GF+ E++E++ PK RQTML
Sbjct: 396 DVVIATPGRFIDHMRNSASFAVETVEILVLDEADRMLEDGFADELNEILTTLPKSRQTML 455
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T VD LI+ L KP+R+ D K S L +E VR+R RE + L+ +C
Sbjct: 456 FSATMTSSVDRLIRAGLNKPVRIQVDSQKKTASNLRQEFVRLRPGREKKRMGYLVHICKT 515
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+T +VIIF K+ AH +I+FGL + AELHG++ QAQR+ ++E FR V+FL+AT
Sbjct: 516 LYTERVIIFFRQKKIAHETRIIFGLLGMSCAELHGSMNQAQRIASVEAFRDGKVNFLLAT 575
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI-- 358
D+A+RGLDI GV TVINY P++L Y+HR+GRTARAGR G A+T + DR ++KA
Sbjct: 576 DLASRGLDIKGVDTVINYEAPQNLEIYIHRIGRTARAGRSGVALTLAAEPDRKVVKAAVR 635
Query: 359 -AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 417
K G+K+ SRI+ KW I++ME ++ I+QEE+EE+ L++ EM+ K ENMI
Sbjct: 636 AGKAQGAKITSRIIEASDADKWQDQIDEMEGEIKEIMQEEKEEKQLQQVEMQVKKGENMI 695
Query: 418 AHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRE 477
++EEI +RPKRTWF T+ +K+ A K +G E + I+E+ K++
Sbjct: 696 KYEEEIASRPKRTWFETQDDKRAA-----------KLAGREELNG-------IREQLKKK 737
Query: 478 REKNLPRKERRKLEAAREMLE 498
+ L K+++KL+A +EM E
Sbjct: 738 SQGKLSNKDKKKLDAKQEMKE 758
>gi|340959217|gb|EGS20398.1| hypothetical protein CTHT_0022270 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 806
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 237/445 (53%), Positives = 320/445 (71%), Gaps = 3/445 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+NLSRP+LR ++G++KPTPIQA IP+AL G+D+ G A+TGSGKTAAF +P LERLLY
Sbjct: 288 MNLSRPILRGLTSVGFTKPTPIQAQTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLY 347
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK++P RV+ILTPTRELA+Q H++ K+A +TDI+ CL VGGLS K+QE LR PD+
Sbjct: 348 RPKKVPTTRVVILTPTRELAIQCHAVATKLAAYTDIKFCLAVGGLSLKVQEAELRLRPDV 407
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V+ATPGR IDH+RNS S +D + +L+LDEADR+LE GF+ E++E+++ PK RQTMLFS
Sbjct: 408 VIATPGRFIDHMRNSASFAVDTIEILVLDEADRMLEDGFADELNEILKTLPKSRQTMLFS 467
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD+LI++ L KP R+ D K TLT+E VR+R RE + LL +C +
Sbjct: 468 ATMTSSVDKLIRVGLNKPARIMVDSQKKTAGTLTQEFVRLRPGREGKRMGYLLYICKNLY 527
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T +VIIF K+ AH +I+FGL L AELHG++ Q QR+ ++E FR V+FL+ATDV
Sbjct: 528 TERVIIFFRQKKVAHEARIIFGLHGLSCAELHGSMNQTQRIASVEAFRDGKVNFLLATDV 587
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR---SLLKAIA 359
A+RGLDI GV TVINY P+ YVHRVGRTARAGR G A+T + DR A
Sbjct: 588 ASRGLDIKGVDTVINYEAPQTHEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAA 647
Query: 360 KRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
K+ G+K+ SR++ + K ++ M ++V IL+EE+EE+ L++ EM+ K EN+I H
Sbjct: 648 KQHGAKVVSRVIDAAEVDKLQAEVDAMAEEVQEILREEKEEKQLQQMEMQVRKGENLIKH 707
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKA 444
+EEI +RPKRTWF +EK+K+ A +A
Sbjct: 708 EEEIKSRPKRTWFESEKDKQRAKQA 732
>gi|71018173|ref|XP_759317.1| hypothetical protein UM03170.1 [Ustilago maydis 521]
gi|74701966|sp|Q4P9P3.1|DRS1_USTMA RecName: Full=ATP-dependent RNA helicase DRS1
gi|46099167|gb|EAK84400.1| hypothetical protein UM03170.1 [Ustilago maydis 521]
Length = 932
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 278/612 (45%), Positives = 382/612 (62%), Gaps = 51/612 (8%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+LSRP+LRA +L + KPTPIQ+ IP+AL G+DI A+TGSGKTAAF +PT+ERL +
Sbjct: 338 FDLSRPVLRALSSLSFHKPTPIQSRTIPIALAGKDIVAGAVTGSGKTAAFMIPTIERLTW 397
Query: 63 RPK-RIP---AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
R K R P RVLIL PTRELA+Q +S+ + IA+FTDIR CL VGGLS K QE L+
Sbjct: 398 RAKTRTPHEAKSRVLILAPTRELAIQCYSVGKSIAKFTDIRFCLCVGGLSVKSQEAELKL 457
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK-RRQ 177
P++V+ATPGR+IDH+RNS S LDD+ +L++DEADR+LE GF+ E++E+V+ CPK RQ
Sbjct: 458 RPEVVIATPGRLIDHVRNSASFTLDDIEILVMDEADRMLEDGFADELNEIVKSCPKGARQ 517
Query: 178 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-------------- 223
TMLFSAT+T+DV++L++LSL +P+RL DP L +E VR+R
Sbjct: 518 TMLFSATMTDDVEQLVRLSLKRPVRLFVDPKRTTAKKLIQEFVRVRGTGTGGVAGADGLS 577
Query: 224 --------------RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALK 269
+ + + A+LLSLC++TFTS+ +IF +K+ AH+LKI+FGL L
Sbjct: 578 GIQDQPATWISGGRKSEDAQRPALLLSLCTRTFTSQTMIFVRSKKLAHQLKIVFGLLGLS 637
Query: 270 AAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVH 329
A ELHG+L+Q QR++AL FR DFL+ATD+A+RGLDI GVQTVINY P +Y+H
Sbjct: 638 AGELHGDLSQEQRIDALTDFRDGKTDFLLATDLASRGLDIKGVQTVINYDMPGQFEAYLH 697
Query: 330 RVGRTARAGREGYAVTFVTDNDRSLLK-AIAKRAGSKLKSRIVAEQSITKWSKIIEQMED 388
RVGRTARAGR G AVT V + DR +LK AI K + ++K RI+ + +E+++
Sbjct: 698 RVGRTARAGRNGRAVTLVGEADRRMLKLAIKKSSAEQIKHRIIPSAVAAHMCETLERLKP 757
Query: 389 QVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKAS 448
+V A+L+EE+EE+ LR AEME K ENM H +EIF+RPKRTWF + EK A KA
Sbjct: 758 EVDAVLREEKEEKALRIAEMELKKGENMANHADEIFSRPKRTWFQSGSEKTQASALSKA- 816
Query: 449 IEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREMLEDEDQVDKLQG 508
G + + S+ + +D RK+ R K + R+++E R+ G
Sbjct: 817 ---GYQATMDARSSSKQKDKYAGLSRKKRRSKMM----RQEIERERKDASGSAGAKTASG 869
Query: 509 SGKDKKEKAGISMVDLAYRRAKAVKAKQKALDAGKIVKSNGKKSKHSSQESNSRAKEMRE 568
G D AGI A R K A K + KS GK+S +++ S + + +
Sbjct: 870 GGMD----AGIRAAKKAQRPTKLGVAPLKLAN-----KSKGKQSGRNARPSATGGSKTKS 920
Query: 569 LFHSDMSEKKQK 580
F+ D S K++
Sbjct: 921 SFNRDFSGNKRR 932
>gi|238484285|ref|XP_002373381.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus flavus
NRRL3357]
gi|317140428|ref|XP_001818181.2| ATP-dependent RNA helicase drs1 [Aspergillus oryzae RIB40]
gi|91206589|sp|Q2UQI6.2|DRS1_ASPOR RecName: Full=ATP-dependent RNA helicase drs1
gi|220701431|gb|EED57769.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus flavus
NRRL3357]
gi|391871961|gb|EIT81110.1| ATP-dependent RNA helicase [Aspergillus oryzae 3.042]
Length = 820
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 233/451 (51%), Positives = 324/451 (71%), Gaps = 3/451 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E NLSRP+LR A+ ++ PTPIQ IP+AL G+DI GSA+TGSGKTAAF +P LERLL
Sbjct: 306 EFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLL 365
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+RP+++P RV IL PTRELAVQ +++ K+A +TDI C +VGG S + QE L+ PD
Sbjct: 366 FRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKRPD 425
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLF
Sbjct: 426 VIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLF 485
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ VD+LI++ L +P+RL D L +E VR+R RE + LL LC +
Sbjct: 486 SATMTDSVDKLIRVGLNRPVRLMVDSKKNTSMNLIQEFVRLRPGREDKRLGYLLHLCKEV 545
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+T +VI+F K+ AHR++I FGL LKAAELHG+++Q QR+ ++E FR+ V FL+ATD
Sbjct: 546 YTGRVIVFFRQKKEAHRVRIAFGLLGLKAAELHGSMSQEQRIRSVENFREGKVSFLLATD 605
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARGLDI GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++KA K
Sbjct: 606 LAARGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKA 665
Query: 362 A---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 418
+ G+K+ SR+V +W++ + +E+++ A+L+EE+ E+ L +AEM+ T++ENMI
Sbjct: 666 SKAQGAKVASRVVDPAVADRWAQKAKDLEEEINAVLEEEKIEKQLAQAEMQVTRSENMIK 725
Query: 419 HKEEIFARPKRTWFVTEKEKKLAVKADKASI 449
H+ EI +RPKRTWF +E+EK L+ KA A +
Sbjct: 726 HEAEIMSRPKRTWFASEREKILSKKAGAAEL 756
>gi|258563228|ref|XP_002582359.1| hypothetical protein UREG_07132 [Uncinocarpus reesii 1704]
gi|237907866|gb|EEP82267.1| hypothetical protein UREG_07132 [Uncinocarpus reesii 1704]
Length = 836
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 256/547 (46%), Positives = 362/547 (66%), Gaps = 30/547 (5%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
NLSRP+LR A+G+S PTPIQ IP+ L G+D+ G A+TGSGKTAAF +P LERLLY
Sbjct: 317 FNLSRPILRGLAAVGFSAPTPIQRKAIPVGLLGKDLVGGAVTGSGKTAAFIIPILERLLY 376
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RP+++P RV+IL PTRELAVQ +++ K+A +TDI C +VGG S + QE L+ PD+
Sbjct: 377 RPRKVPTSRVVILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKQRPDV 436
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 437 IIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFS 496
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T+ VD+LI++ L +P+RL D + TL +E VR+R RE + L+ LC +
Sbjct: 497 ATMTDSVDKLIRVGLNRPVRLMVDAKKQTVGTLVQEFVRLRPGREGKRMGYLVLLCQTVY 556
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T++VI+F K+ AHR +I+FGL LKAAELHG+++Q QR+ A+E FR V FL+ATD+
Sbjct: 557 TNRVIVFFRQKKEAHRARIVFGLLGLKAAELHGSMSQEQRIHAVEAFRDGKVPFLLATDL 616
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV++VINY P+ Y+HRVGRTARAGR G A T + DR ++KA K
Sbjct: 617 ASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKIVKAAVKAG 676
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SRIV +W+ +E+M+ ++ IL+EE+ E+ L +AEM+ T+ N+I H
Sbjct: 677 RAQGAKIVSRIVDPNVADEWAIKVEEMQSEIEDILKEEKAEKHLAQAEMQVTRGHNLIKH 736
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRERE 479
++EI +RPKRTWF TE+EKK +A ++ + G G+ + KEKRK
Sbjct: 737 EDEIMSRPKRTWFETEREKK---EAKNRALSELNGPGSVLK----------KEKRK---- 779
Query: 480 KNLPRKERRKLEAAREMLEDEDQVDKLQGSGKDKKEKAGISMVDLAYRRAKAVKAKQKAL 539
L KE++KL+ R L +E +V + K+++ K G+ + KA K K +
Sbjct: 780 --LSGKEKKKLDDTR--LREEGKV--WKKGKKERESKGGLQ----GQSKGKAKKHKTRGK 829
Query: 540 DAGKIVK 546
AG+ K
Sbjct: 830 PAGRASK 836
>gi|320038882|gb|EFW20817.1| ATP-dependent RNA helicase DRS1 [Coccidioides posadasii str.
Silveira]
Length = 840
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 245/492 (49%), Positives = 339/492 (68%), Gaps = 15/492 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
NLSRP+LR A+G+S PTPIQ IP+ L G+D+ G A+TGSGKTAAF +P LERLLY
Sbjct: 324 FNLSRPILRGLAAVGFSAPTPIQRKAIPIGLLGKDLVGGAVTGSGKTAAFIIPILERLLY 383
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RP+++P RV IL PTRELAVQ +++ K+A +TDI C +VGG S + QE L+ PD+
Sbjct: 384 RPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKQRPDV 443
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 444 IIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILNTIPKSRQTMLFS 503
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T+ VD+LI++ L +P+RL D TL +E VR+R RE + L+ LC+ +
Sbjct: 504 ATMTDSVDKLIRVGLNRPVRLMVDSKKHTVGTLVQEFVRLRPGREGKRMGYLVLLCNTIY 563
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T++VI+F K+ AHR +I+FGL LKAAELHG+++Q QR+ A+E FR V FL+ATD+
Sbjct: 564 TNRVIVFFRQKKEAHRARIIFGLLGLKAAELHGSMSQEQRINAVEAFRDGKVPFLLATDL 623
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV++VINY P+ Y+HRVGRTARAGR G A T + DR ++KA AK
Sbjct: 624 ASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAAKAG 683
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR+V +W+ +E+M+ ++ IL+EE+EE+ L +AEM+ + +N+I H
Sbjct: 684 RAQGAKIVSRVVDPAVADEWASKVEEMQAEIEDILKEEKEEKQLAQAEMQVKRGQNLIKH 743
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKADKASI---------EKGKGSGNE---VTSAQQAED 467
+ EI ARPKRTWF TE+EK+ A K + + EK K SG E + + E+
Sbjct: 744 ESEIMARPKRTWFETEREKREAKKRALSELNGPDSVIKKEKRKLSGKEKKKLDDNRLREE 803
Query: 468 LKIKEKRKRERE 479
KI +K K+ERE
Sbjct: 804 GKIWKKGKKERE 815
>gi|330840963|ref|XP_003292476.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum]
gi|325077283|gb|EGC31006.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum]
Length = 780
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 251/493 (50%), Positives = 343/493 (69%), Gaps = 6/493 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL+LSRPLL+A + LG+S+PTPIQA IPLAL G+DI SA TGSGKTAAF LP LERLL
Sbjct: 186 ELHLSRPLLKAVQKLGFSQPTPIQAKTIPLALNGKDILASASTGSGKTAAFLLPILERLL 245
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+R AIRVL+L PTRELA+Q S++E +AQF++I CL+VGGLS K QE LR PD
Sbjct: 246 FRDSEYRAIRVLVLLPTRELALQCQSVLENLAQFSNITSCLIVGGLSNKAQEVELRKRPD 305
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+V+ATPGR+IDHL N+ + L+DL +LILDEADRLL++GF EI+++V CP RQTMLF
Sbjct: 306 VVIATPGRLIDHLLNAHGIGLEDLEILILDEADRLLDMGFKDEINKIVDSCPTSRQTMLF 365
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SATL ++V L KLSL +P+R+ D + STL +E V+I+ ++ A+L+SLC++
Sbjct: 366 SATLNDEVKTLAKLSLQQPIRVQVDALFQVASTLDQEFVKIKSQHLSDRPAILMSLCTRV 425
Query: 242 F-TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
F T IIF +K+ HRL I+FGL+ LKAAELHGNL+Q QR ++L+ FR V++L+A+
Sbjct: 426 FNTGGTIIFCRSKKEVHRLCIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGKVNYLLAS 485
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDIIGV+TVINY P L Y+HRVGRTARAG EG + +F+T+NDR +LK I
Sbjct: 486 DVASRGLDIIGVKTVINYNMPNTLAQYIHRVGRTARAGMEGKSCSFITENDRKILKEIVT 545
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
+A +K KSR V++ ++ W IE++ + + I+++E +E LRKAE KAE +I+
Sbjct: 546 KARNKAKSRSVSQDNVNFWRNRIEELTEDIREIVRDELKEADLRKAEKALDKAEKVISKP 605
Query: 421 EEIFARPKRTWFVT----EKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKR 476
E +R W+ T EK K+L + ++ K + + T A +K K K+K+
Sbjct: 606 FEENTETERVWYKTKSEEEKSKELWKLENGIGLKPLKSNAIDTTGASNVPSIK-KLKQKK 664
Query: 477 EREKNLPRKERRK 489
+ L RK+RR+
Sbjct: 665 DPYYGLSRKQRRQ 677
>gi|67517117|ref|XP_658442.1| hypothetical protein AN0838.2 [Aspergillus nidulans FGSC A4]
gi|40746512|gb|EAA65668.1| hypothetical protein AN0838.2 [Aspergillus nidulans FGSC A4]
Length = 1676
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 247/501 (49%), Positives = 344/501 (68%), Gaps = 17/501 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E NLSRP+LR A+ ++ PTPIQ IP+AL G+DI GSA+TGSGKTAAF +P LERLL
Sbjct: 794 EFNLSRPILRGLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLL 853
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+RP+++P RV IL PTRELAVQ +++ K+A +TDI C +VGG S + QE L+ PD
Sbjct: 854 FRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKKRPD 913
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLF
Sbjct: 914 VIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLF 973
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ VD+LI++ L +P+RL D TL +E VR+R RE + LL LC +
Sbjct: 974 SATMTDSVDKLIRVGLNRPVRLMVDTKKNTAVTLVQEFVRLRPGREDKRLGYLLHLCKEV 1033
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+T +VI+F K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR +V+FL+ATD
Sbjct: 1034 YTGRVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFRDGNVNFLLATD 1093
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+A+RGLDI GV+TVINY P+ YVHRVGRTARAGR G A T + DR ++KA K
Sbjct: 1094 LASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKA 1153
Query: 362 A---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 418
G+K+ SR+V W+ + ME+++ A+L+EE+ E+ L +AEM+ TK EN+I
Sbjct: 1154 GKAQGAKIVSRVVDPSVADDWASKAKDMEEEIDAVLEEEKLEKQLAQAEMQVTKGENLIK 1213
Query: 419 HKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRER 478
H+ EI +RPKRTWF TE+EK++A K A E+ + E +K+ K K+
Sbjct: 1214 HEAEIKSRPKRTWFETEREKRVAKKIGAA----------ELNGPSKKEKVKLSNKDKKRL 1263
Query: 479 EKNLPRKE----RRKLEAARE 495
+ R+E R+K +A RE
Sbjct: 1264 DAAKLRQEEGLGRKKSKAERE 1284
>gi|83766036|dbj|BAE56179.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 856
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 233/451 (51%), Positives = 324/451 (71%), Gaps = 3/451 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E NLSRP+LR A+ ++ PTPIQ IP+AL G+DI GSA+TGSGKTAAF +P LERLL
Sbjct: 342 EFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLL 401
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+RP+++P RV IL PTRELAVQ +++ K+A +TDI C +VGG S + QE L+ PD
Sbjct: 402 FRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKRPD 461
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLF
Sbjct: 462 VIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLF 521
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ VD+LI++ L +P+RL D L +E VR+R RE + LL LC +
Sbjct: 522 SATMTDSVDKLIRVGLNRPVRLMVDSKKNTSMNLIQEFVRLRPGREDKRLGYLLHLCKEV 581
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+T +VI+F K+ AHR++I FGL LKAAELHG+++Q QR+ ++E FR+ V FL+ATD
Sbjct: 582 YTGRVIVFFRQKKEAHRVRIAFGLLGLKAAELHGSMSQEQRIRSVENFREGKVSFLLATD 641
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARGLDI GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++KA K
Sbjct: 642 LAARGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKA 701
Query: 362 A---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 418
+ G+K+ SR+V +W++ + +E+++ A+L+EE+ E+ L +AEM+ T++ENMI
Sbjct: 702 SKAQGAKVASRVVDPAVADRWAQKAKDLEEEINAVLEEEKIEKQLAQAEMQVTRSENMIK 761
Query: 419 HKEEIFARPKRTWFVTEKEKKLAVKADKASI 449
H+ EI +RPKRTWF +E+EK L+ KA A +
Sbjct: 762 HEAEIMSRPKRTWFASEREKILSKKAGAAEL 792
>gi|443922203|gb|ELU41680.1| ATP-dependent RNA helicase drs1 [Rhizoctonia solani AG-1 IA]
Length = 1126
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 252/486 (51%), Positives = 344/486 (70%), Gaps = 15/486 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+NLSRPLLRA + G++ PTPIQAA IP+AL G+D+ G A+TGSGKTAAF +P LERLLY
Sbjct: 191 MNLSRPLLRALTSAGFNSPTPIQAATIPVALLGKDVVGGAVTGSGKTAAFIIPILERLLY 250
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
R R RVL+L PTRELAVQ H++ EK+ FTD+RC L+VGGLS K QE LR+ PD+
Sbjct: 251 R-SRDAHTRVLVLVPTRELAVQCHAVAEKLGTFTDVRCALIVGGLSLKAQEATLRTRPDL 309
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
VVATPGR+IDHLRNS S LD L VL+LDEADR+L GF+ E+ E+V+ CP RQTMLFS
Sbjct: 310 VVATPGRLIDHLRNSRSFALDALDVLVLDEADRMLSDGFADELKEIVQSCPTGRQTMLFS 369
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T+DV+ LI+LSL P+RL DPS + L +E VR+R +E + A+L++LC +T
Sbjct: 370 ATMTDDVETLIRLSLRHPVRLFVDPSKQTARGLVQEFVRVRAGKEAERPALLVALCQRTA 429
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
VIIF +K+ AH+ +++FGL LKA ELHGNLTQ QRL AL FR D+L+ATD+
Sbjct: 430 RKGVIIFFRSKKLAHQFRVVFGLCGLKALELHGNLTQEQRLNALTKFRSGEADYLLATDL 489
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI G++TVINY P + YVHRVGRTARAG++G ++T V + DR +LKA KR+
Sbjct: 490 ASRGLDIRGIETVINYDMPGQIEQYVHRVGRTARAGKKGRSITLVGEADRKMLKAAIKRS 549
Query: 363 -GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 421
K++ R+V + + + +E+++ +V +L+EE+EE++LR AEME K +NMI H+E
Sbjct: 550 EADKIRHRVVPSEVVASVVEKLEELKGEVEEVLKEEKEEKLLRTAEMELKKGQNMITHEE 609
Query: 422 EIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKN 481
EIF RPKRTWF T+KEK+ K +G + Q + + ++++++
Sbjct: 610 EIFGRPKRTWFQTDKEKE-------------KAAGEFASIVQSTRTEPVHNNKSKDKDED 656
Query: 482 LPRKER 487
P++++
Sbjct: 657 KPKRDK 662
>gi|393218427|gb|EJD03915.1| DEAD-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 782
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 263/546 (48%), Positives = 368/546 (67%), Gaps = 32/546 (5%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRPLL+A ALG+S PTPIQ A IP+AL G+D+ G+A+TGSGKTAAF +P LERL+Y
Sbjct: 190 MSLSRPLLKALTALGFSTPTPIQVATIPVALLGKDVVGNAVTGSGKTAAFMIPVLERLMY 249
Query: 63 RP--KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
R K A+R ++L PTREL VQ + +K++ F D+R L+VGGLS K QE LR+ P
Sbjct: 250 RERGKNKAAVRCVVLVPTRELGVQCVDVAKKLSAFMDVRISLIVGGLSLKSQEAELRTRP 309
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ATPGR+IDHLRNS S L+ L VLILDEADR+L GF+ E+ E+++ CP RQTML
Sbjct: 310 DIVIATPGRLIDHLRNSPSFGLETLDVLILDEADRMLSDGFADELKEIIQACPTSRQTML 369
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T+DVD L+++SL +P++L DP L +E VR+R +E + A+L++LC +
Sbjct: 370 FSATMTDDVDALVRMSLNRPVKLFVDPKRSTARGLIQEFVRVRAGKEAERAALLVALCKR 429
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF VI+F +K+ AH+++++FG+ +KA ELHG+LTQ QRL AL+LFR VDFL+AT
Sbjct: 430 TFKQGVIVFFRSKKLAHQMRVVFGILGMKAEELHGDLTQEQRLRALQLFRDGAVDFLMAT 489
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+A+RGLDI G++ V+NY P L Y+HRVGRTARAG++G +VT V + DR +LKA K
Sbjct: 490 DLASRGLDIKGIEAVVNYDMPGQLAQYLHRVGRTARAGKKGRSVTLVGEADRKILKAAIK 549
Query: 361 RAG--SKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 418
A K++ R + ++ W+K + ++ D++ +L+EE+EE+ LR AE E K ENMI
Sbjct: 550 HASDVDKVRHRTIPSDQVSIWAKRLAEINDEITEVLKEEKEEKALRLAERELKKGENMIE 609
Query: 419 HKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRER 478
H++EIF+RP RTWF +EKEK A + K E G+ + S + ++++ K KR++
Sbjct: 610 HEKEIFSRPARTWFQSEKEKLNAKEISKKQYEIAAGATS--PSKGKNKEVQADAKPKRDK 667
Query: 479 EKNLPRK-ERRKL---EAARE---------------------MLEDEDQVD-KLQGSGKD 512
L R+ +RRKL E A E M E + Q K +GSGKD
Sbjct: 668 FAGLSRRAKRRKLALEEGAAETTAVRAAVRNAKKAGRPTKIGMPEPKQQNPAKSKGSGKD 727
Query: 513 KKEKAG 518
++ KAG
Sbjct: 728 RRGKAG 733
>gi|303317730|ref|XP_003068867.1| ATP-dependent RNA helicase DRS1, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240108548|gb|EER26722.1| ATP-dependent RNA helicase DRS1, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 840
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 244/492 (49%), Positives = 338/492 (68%), Gaps = 15/492 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
NLSRP+LR A+G+S PTPIQ IP+ L G+D+ G A+TGSGKTAAF +P LERLLY
Sbjct: 324 FNLSRPILRGLAAVGFSAPTPIQRKAIPIGLLGKDLVGGAVTGSGKTAAFIIPILERLLY 383
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RP+++P RV IL PTRELAVQ +++ K+A +TDI C +VGG S + QE L+ PD+
Sbjct: 384 RPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKQRPDV 443
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 444 IIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILNTIPKSRQTMLFS 503
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T+ VD+LI++ L +P+RL D TL +E VR+R RE + L+ LC+ +
Sbjct: 504 ATMTDSVDKLIRVGLNRPVRLMVDSKKHTVGTLVQEFVRLRPGREGKRMGYLVLLCNTIY 563
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T++VI+F K+ AHR +I+FGL LKAAELHG+++Q QR+ A+E FR V FL+ATD+
Sbjct: 564 TNRVIVFFRQKKEAHRARIIFGLLGLKAAELHGSMSQEQRINAVEAFRDGKVPFLLATDL 623
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV++VINY P+ Y+HRVGRTARAGR G A T + DR ++KA K
Sbjct: 624 ASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKAG 683
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR+V +W+ +E+M+ ++ IL+EE+EE+ L +AEM+ + +N+I H
Sbjct: 684 RAQGAKIVSRVVDPAVADEWASKVEEMQAEIEDILKEEKEEKQLAQAEMQVKRGQNLIKH 743
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKADKASI---------EKGKGSGNE---VTSAQQAED 467
+ EI ARPKRTWF TE+EK+ A K + + EK K SG E + + E+
Sbjct: 744 ESEIMARPKRTWFETEREKREAKKRALSELNGPDSVIKKEKRKLSGKEKKKLDDNRLREE 803
Query: 468 LKIKEKRKRERE 479
KI +K K+ERE
Sbjct: 804 GKIWKKGKKERE 815
>gi|119186507|ref|XP_001243860.1| hypothetical protein CIMG_03301 [Coccidioides immitis RS]
gi|118595360|sp|Q1E2B2.1|DRS1_COCIM RecName: Full=ATP-dependent RNA helicase DRS1
gi|392870577|gb|EAS32387.2| ATP-dependent RNA helicase DRS1 [Coccidioides immitis RS]
Length = 840
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 244/492 (49%), Positives = 337/492 (68%), Gaps = 15/492 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
NLSRP+LR A+G+S PTPIQ IP+ L G+D+ G A+TGSGKTAAF +P LERLLY
Sbjct: 324 FNLSRPILRGLAAVGFSAPTPIQRKAIPVGLLGKDLVGGAVTGSGKTAAFIIPILERLLY 383
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RP+++P RV IL PTRELAVQ +++ K+A +TDI C +VGG S + QE L+ PD+
Sbjct: 384 RPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKQRPDV 443
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 444 IIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILNTIPKSRQTMLFS 503
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T+ VD+LI++ L +P+RL D TL +E VR+R RE + L+ LC+ +
Sbjct: 504 ATMTDSVDKLIRVGLNRPVRLMVDSKKHTVGTLVQEFVRLRPGREGKRMGYLVLLCNTIY 563
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T++VI+F K+ AHR +I+FGL LKAAELHG+++Q QR+ A+E FR V FL+ATD+
Sbjct: 564 TNRVIVFFRQKKEAHRARIIFGLLGLKAAELHGSMSQEQRINAVEAFRDGKVPFLLATDL 623
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV++VINY P+ Y+HRVGRTARAGR G A T + DR ++KA K
Sbjct: 624 ASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKAG 683
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR+V +W+ +E+M+ ++ IL+EE+EE+ L +AEM+ + +N+I H
Sbjct: 684 RAQGAKIVSRVVDPAVADEWASKVEEMQAEIEDILKEEKEEKQLAQAEMQVKRGQNLIKH 743
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKADKASI---------EKGKGSGNE---VTSAQQAED 467
EI ARPKRTWF TE+EK+ A K + + EK K SG E + + E+
Sbjct: 744 GSEIMARPKRTWFETEREKREAKKRALSELNGPDSVIKKEKRKLSGKEKKKLDDNRLREE 803
Query: 468 LKIKEKRKRERE 479
KI +K K+ERE
Sbjct: 804 GKIWKKGKKERE 815
>gi|213408188|ref|XP_002174865.1| ATP-dependent RNA helicase drs1 [Schizosaccharomyces japonicus
yFS275]
gi|212002912|gb|EEB08572.1| ATP-dependent RNA helicase drs1 [Schizosaccharomyces japonicus
yFS275]
Length = 730
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/441 (51%), Positives = 320/441 (72%), Gaps = 3/441 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++ LSRP+LR +L + PTPIQ+ IP+AL G+DI G+A+TGSGKTAAF +P LERL+
Sbjct: 235 DMKLSRPILRGLSSLNFEDPTPIQSKTIPVALLGKDIVGAAVTGSGKTAAFVVPILERLV 294
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
YRPK+IP RVLI+ PTRELA+Q H++ ++IA FTDI CL VGGLS K+QE LR PD
Sbjct: 295 YRPKKIPTSRVLIICPTRELAMQCHNVAKRIAAFTDITLCLCVGGLSLKVQEQELRKRPD 354
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR IDH+RNS +D++ ++++DEADR+LE GF+ E++E+V+LCPK RQTMLF
Sbjct: 355 IIIATPGRFIDHVRNSQGFSVDNIEIMVIDEADRMLEDGFADELNEIVKLCPKSRQTMLF 414
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+TE VD+L++LSL +P+R+ D L +E +R+R RE + A+L+ +C
Sbjct: 415 SATMTEKVDDLVRLSLNRPVRIFVDAKKATAKRLVQEFIRVRPQREQLRPAMLVHICKTF 474
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F +VIIF K AH+++I+FGL L A E+HG+L+Q QR+ ALE FR VD+L+ATD
Sbjct: 475 FHRRVIIFFRNKAFAHKMRIIFGLVGLNATEIHGSLSQEQRVRALEDFRDGKVDYLLATD 534
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI GV+ VINY P Y+HRVGRTARAGR G A++ V +NDR ++K + K
Sbjct: 535 VASRGLDIKGVEFVINYEAPASHEIYLHRVGRTARAGRSGRAISLVGENDRKVIKDVLKS 594
Query: 362 AGSK---LKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 418
+ ++ + SR + + K +E++ED V +++EE++ER ++ AE + K EN++
Sbjct: 595 SENQHDNVVSRNLDFPRVEAIGKELEELEDTVKQVMEEEKQERHIKIAERDLKKGENILK 654
Query: 419 HKEEIFARPKRTWFVTEKEKK 439
H++EI ARP RTWF TEKEKK
Sbjct: 655 HQDEIKARPARTWFQTEKEKK 675
>gi|317025749|ref|XP_001389716.2| ATP-dependent RNA helicase drs1 [Aspergillus niger CBS 513.88]
Length = 827
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 243/500 (48%), Positives = 339/500 (67%), Gaps = 21/500 (4%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E NLSRP+LR + +S PTPIQ IP+AL G+DI GSA+TGSGKTAAF +P LERLL
Sbjct: 313 EFNLSRPILRGLAGVNFSNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLL 372
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+RP+++P RV IL PTRELAVQ +++ K+A +TDI C +VGG S + QE L+ PD
Sbjct: 373 FRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKRPD 432
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLF
Sbjct: 433 VIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLF 492
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ VD+LI++ L +P+RL D TL +E VR+R RE + LL LC +
Sbjct: 493 SATMTDTVDKLIRVGLNRPVRLMVDAKKNTAVTLVQEFVRLRPGREDKRLGYLLYLCKEI 552
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+T +VI+F K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR+ FL+ATD
Sbjct: 553 YTGRVIVFFRQKKEAHRVRIIFGLLGLKAAELHGSMSQEQRIKSVENFREGKAAFLLATD 612
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+A+RGLDI GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++KA K
Sbjct: 613 LASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKA 672
Query: 362 A---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 418
G+K+ SR++ W+ E++ D+V +L EE+ E+ L +AEM+ TK EN+I
Sbjct: 673 GKSQGAKIASRVIEPAVADSWAAKAEELADEVEEVLSEEKLEKQLAQAEMQVTKGENLIK 732
Query: 419 HKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRER 478
H+ EI +RPKRTWF TE++KK A K A + G +G + KEK+K
Sbjct: 733 HEAEIKSRPKRTWFETERDKKAARKLGAAEL-NGPDAG-----------MSKKEKQK--- 777
Query: 479 EKNLPRKERRKLEAAREMLE 498
L K++++L+ +R+ E
Sbjct: 778 ---LSNKDKKRLDDSRQRQE 794
>gi|164428960|ref|XP_001728501.1| hypothetical protein NCU11175 [Neurospora crassa OR74A]
gi|157072353|gb|EDO65410.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 857
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 250/497 (50%), Positives = 345/497 (69%), Gaps = 21/497 (4%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E++LSRP+LR ++G++KPTPIQA IP++L G+D+ G A+TGSGKTAAF +P LERLL
Sbjct: 297 EMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAAFVVPILERLL 356
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
YRPK++P RV+ILTPTRELA+Q H++ K+A TDI+ CL VGGLS K+QE LR PD
Sbjct: 357 YRPKKVPTTRVVILTPTRELAIQCHAVAVKLASHTDIKFCLAVGGLSLKVQEAELRLRPD 416
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+V+ATPGR IDH+RNS S +D + +L+LDEADR+LE GF+ E++E++ PK RQTMLF
Sbjct: 417 VVIATPGRFIDHMRNSASFAVDTIEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLF 476
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T VD LI+ L KP+R+ AD K TL +E VR+R RE +E LL +C
Sbjct: 477 SATMTSSVDRLIRAGLNKPVRIMADSQKKTAGTLVQEFVRLRPGRESKREGYLLHICKTI 536
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+T +VIIF K+ AH+++I+FGL L AELHG++ QAQR++++E FR V+FL+ATD
Sbjct: 537 YTERVIIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQAQRIQSVEDFRDGKVNFLLATD 596
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+A+RGLDI GV TVINY P+ YVHRVGRTARAGR G A+T + DR ++KA K
Sbjct: 597 LASRGLDIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKA 656
Query: 362 A---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 418
G+K+ SRI+ KW I+++ED++ I+QEE+EE+ L+ EM+ K ENMI
Sbjct: 657 GKSQGAKISSRIIDPADADKWQAEIDELEDEIEEIMQEEKEEKQLQNMEMQVKKGENMIK 716
Query: 419 HKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRER 478
+++EI +RPKRTWF T+++KK A A +A + +++K K +
Sbjct: 717 YEDEISSRPKRTWFETQEDKKKAKAAGRAELN------------------GVRDKLKSKN 758
Query: 479 EKNLPRKERRKLEAARE 495
E L K+R+KL+ +E
Sbjct: 759 EGKLSNKDRKKLDTMQE 775
>gi|350638693|gb|EHA27049.1| hypothetical protein ASPNIDRAFT_130294 [Aspergillus niger ATCC
1015]
Length = 793
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 243/500 (48%), Positives = 339/500 (67%), Gaps = 21/500 (4%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E NLSRP+LR + +S PTPIQ IP+AL G+DI GSA+TGSGKTAAF +P LERLL
Sbjct: 286 EFNLSRPILRGLAGVNFSNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLL 345
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+RP+++P RV IL PTRELAVQ +++ K+A +TDI C +VGG S + QE L+ PD
Sbjct: 346 FRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKRPD 405
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLF
Sbjct: 406 VIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLF 465
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ VD+LI++ L +P+RL D TL +E VR+R RE + LL LC +
Sbjct: 466 SATMTDTVDKLIRVGLNRPVRLMVDAKKNTAVTLVQEFVRLRPGREDKRLGYLLYLCKEI 525
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+T +VI+F K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR+ FL+ATD
Sbjct: 526 YTGRVIVFFRQKKEAHRVRIIFGLLGLKAAELHGSMSQEQRIKSVENFREGKAAFLLATD 585
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+A+RGLDI GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++KA K
Sbjct: 586 LASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKA 645
Query: 362 A---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 418
G+K+ SR++ W+ E++ D+V +L EE+ E+ L +AEM+ TK EN+I
Sbjct: 646 GKSQGAKIASRVIEPAVADSWAAKAEELADEVEEVLSEEKLEKQLAQAEMQVTKGENLIK 705
Query: 419 HKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRER 478
H+ EI +RPKRTWF TE++KK A K A + G +G + KEK+K
Sbjct: 706 HEAEIKSRPKRTWFETERDKKAARKLGAAEL-NGPDAG-----------MSKKEKQK--- 750
Query: 479 EKNLPRKERRKLEAAREMLE 498
L K++++L+ +R+ E
Sbjct: 751 ---LSNKDKKRLDDSRQRQE 767
>gi|142982611|sp|P0C2N8.1|DRS1_NEUCR RecName: Full=ATP-dependent RNA helicase drs-1
Length = 829
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 250/497 (50%), Positives = 345/497 (69%), Gaps = 21/497 (4%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E++LSRP+LR ++G++KPTPIQA IP++L G+D+ G A+TGSGKTAAF +P LERLL
Sbjct: 297 EMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAAFVVPILERLL 356
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
YRPK++P RV+ILTPTRELA+Q H++ K+A TDI+ CL VGGLS K+QE LR PD
Sbjct: 357 YRPKKVPTTRVVILTPTRELAIQCHAVAVKLASHTDIKFCLAVGGLSLKVQEAELRLRPD 416
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+V+ATPGR IDH+RNS S +D + +L+LDEADR+LE GF+ E++E++ PK RQTMLF
Sbjct: 417 VVIATPGRFIDHMRNSASFAVDTIEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLF 476
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T VD LI+ L KP+R+ AD K TL +E VR+R RE +E LL +C
Sbjct: 477 SATMTSSVDRLIRAGLNKPVRIMADSQKKTAGTLVQEFVRLRPGRESKREGYLLHICKTI 536
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+T +VIIF K+ AH+++I+FGL L AELHG++ QAQR++++E FR V+FL+ATD
Sbjct: 537 YTERVIIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQAQRIQSVEDFRDGKVNFLLATD 596
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+A+RGLDI GV TVINY P+ YVHRVGRTARAGR G A+T + DR ++KA K
Sbjct: 597 LASRGLDIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKA 656
Query: 362 A---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 418
G+K+ SRI+ KW I+++ED++ I+QEE+EE+ L+ EM+ K ENMI
Sbjct: 657 GKSQGAKISSRIIDPADADKWQAEIDELEDEIEEIMQEEKEEKQLQNMEMQVKKGENMIK 716
Query: 419 HKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRER 478
+++EI +RPKRTWF T+++KK A A +A + +++K K +
Sbjct: 717 YEDEISSRPKRTWFETQEDKKKAKAAGRAELN------------------GVRDKLKSKN 758
Query: 479 EKNLPRKERRKLEAARE 495
E L K+R+KL+ +E
Sbjct: 759 EGKLSNKDRKKLDTMQE 775
>gi|336469774|gb|EGO57936.1| hypothetical protein NEUTE1DRAFT_81992 [Neurospora tetrasperma FGSC
2508]
Length = 830
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 250/497 (50%), Positives = 345/497 (69%), Gaps = 21/497 (4%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E++LSRP+LR ++G++KPTPIQA IP++L G+D+ G A+TGSGKTAAF +P LERLL
Sbjct: 298 EMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAAFVVPILERLL 357
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
YRPK++P RV+ILTPTRELA+Q H++ K+A TDI+ CL VGGLS K+QE LR PD
Sbjct: 358 YRPKKVPTTRVVILTPTRELAIQCHAVAVKLASHTDIKFCLAVGGLSLKVQEAELRLRPD 417
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+V+ATPGR IDH+RNS S +D + +L+LDEADR+LE GF+ E++E++ PK RQTMLF
Sbjct: 418 VVIATPGRFIDHMRNSASFAVDTIEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLF 477
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T VD LI+ L KP+R+ AD K TL +E VR+R RE +E LL +C
Sbjct: 478 SATMTSSVDRLIRAGLNKPVRIMADSQKKTAGTLVQEFVRLRPGRESKREGYLLHICKTI 537
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+T +VIIF K+ AH+++I+FGL L AELHG++ QAQR++++E FR V+FL+ATD
Sbjct: 538 YTERVIIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQAQRIQSVEDFRDGKVNFLLATD 597
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+A+RGLDI GV TVINY P+ YVHRVGRTARAGR G A+T + DR ++KA K
Sbjct: 598 LASRGLDIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKA 657
Query: 362 A---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 418
G+K+ SRI+ KW I+++ED++ I+QEE+EE+ L+ EM+ K ENMI
Sbjct: 658 GKSQGAKISSRIIDPADADKWQAEIDELEDEIEEIMQEEKEEKQLQNMEMQVKKGENMIK 717
Query: 419 HKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRER 478
+++EI +RPKRTWF T+++KK A A +A + +++K K +
Sbjct: 718 YEDEISSRPKRTWFETQEDKKKAKAAGRAELN------------------GVRDKLKSKN 759
Query: 479 EKNLPRKERRKLEAARE 495
E L K+R+KL+ +E
Sbjct: 760 EGKLSNKDRKKLDTMQE 776
>gi|350290558|gb|EGZ71772.1| DEAD-domain-containing protein [Neurospora tetrasperma FGSC 2509]
Length = 865
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 250/497 (50%), Positives = 345/497 (69%), Gaps = 21/497 (4%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E++LSRP+LR ++G++KPTPIQA IP++L G+D+ G A+TGSGKTAAF +P LERLL
Sbjct: 298 EMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAAFVVPILERLL 357
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
YRPK++P RV+ILTPTRELA+Q H++ K+A TDI+ CL VGGLS K+QE LR PD
Sbjct: 358 YRPKKVPTTRVVILTPTRELAIQCHAVAVKLASHTDIKFCLAVGGLSLKVQEAELRLRPD 417
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+V+ATPGR IDH+RNS S +D + +L+LDEADR+LE GF+ E++E++ PK RQTMLF
Sbjct: 418 VVIATPGRFIDHMRNSASFAVDTIEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLF 477
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T VD LI+ L KP+R+ AD K TL +E VR+R RE +E LL +C
Sbjct: 478 SATMTSSVDRLIRAGLNKPVRIMADSQKKTAGTLVQEFVRLRPGRESKREGYLLHICKTI 537
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+T +VIIF K+ AH+++I+FGL L AELHG++ QAQR++++E FR V+FL+ATD
Sbjct: 538 YTERVIIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQAQRIQSVEDFRDGKVNFLLATD 597
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+A+RGLDI GV TVINY P+ YVHRVGRTARAGR G A+T + DR ++KA K
Sbjct: 598 LASRGLDIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKA 657
Query: 362 A---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 418
G+K+ SRI+ KW I+++ED++ I+QEE+EE+ L+ EM+ K ENMI
Sbjct: 658 GKSQGAKISSRIIDPADADKWQAEIDELEDEIEEIMQEEKEEKQLQNMEMQVKKGENMIK 717
Query: 419 HKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRER 478
+++EI +RPKRTWF T+++KK A A +A + +++K K +
Sbjct: 718 YEDEISSRPKRTWFETQEDKKKAKAAGRAELN------------------GVRDKLKSKN 759
Query: 479 EKNLPRKERRKLEAARE 495
E L K+R+KL+ +E
Sbjct: 760 EGKLSNKDRKKLDTMQE 776
>gi|393240212|gb|EJD47739.1| DEAD-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 778
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/451 (51%), Positives = 320/451 (70%), Gaps = 15/451 (3%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ +NLSRP+L+A AL + PTPIQA+ IP+AL G+DI G+A+TGSGKTAAF +P LERL
Sbjct: 176 LSMNLSRPILKALTALNFHTPTPIQASTIPVALLGKDIVGNAVTGSGKTAAFVIPMLERL 235
Query: 61 LYR--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
LYR K A R +IL PTRELAVQ + K+A TD+R CL+VGGLS K QE +LR
Sbjct: 236 LYRDKSKNAAATRCVILVPTRELAVQCFDVATKLAAHTDVRFCLIVGGLSVKAQEASLRL 295
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
PD+V+ATPGR+IDHLRN+ LD + +L+LDEADR+L GF+ E+ E+V+ CP+ RQT
Sbjct: 296 RPDVVIATPGRLIDHLRNAPQFGLDAVDILVLDEADRMLSDGFADELAEIVQACPRGRQT 355
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
MLFSAT+T+ VDEL+K+SL KP+RL D +L +E VR+R RE ++ +L +LC
Sbjct: 356 MLFSATMTDSVDELVKMSLNKPVRLFVDAKRTTARSLVQEFVRVR--REEDRGGMLAALC 413
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+TF ++ IIF +K+ AH++++ F L L A ELHG+LTQ QRL +L+ FR +DFL+
Sbjct: 414 KRTFKARAIIFFRSKKLAHQMRVAFALLNLNAGELHGDLTQEQRLRSLQQFRDGQIDFLM 473
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+A+RGLDI GV+ VINY P L Y+HRVGRTARAG G +VT V ++DR +LKA
Sbjct: 474 ATDLASRGLDIKGVEVVINYDMPGQLAQYLHRVGRTARAGARGRSVTLVGESDRKMLKAA 533
Query: 359 AKRAGS-----------KLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAE 407
K + + ++ R+V ++ KW+ + ++D++ +L EE+EE+ +R+AE
Sbjct: 534 IKHSANASKDDADKVDETVRHRVVPPDALAKWTAALADLKDEIVRVLAEEKEEKAIRQAE 593
Query: 408 MEATKAENMIAHKEEIFARPKRTWFVTEKEK 438
M+ K ENMI H++EIF+RP RTWF +EK+K
Sbjct: 594 MQIKKGENMIEHEKEIFSRPARTWFQSEKDK 624
>gi|367049970|ref|XP_003655364.1| hypothetical protein THITE_2119013 [Thielavia terrestris NRRL 8126]
gi|347002628|gb|AEO69028.1| hypothetical protein THITE_2119013 [Thielavia terrestris NRRL 8126]
Length = 755
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 234/437 (53%), Positives = 314/437 (71%), Gaps = 3/437 (0%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
++L LSRPLLRA ++G+ +PTPIQA IP+AL G+D+ G A+TGSGKTAAF +P LERL
Sbjct: 235 LDLPLSRPLLRALTSVGFDEPTPIQAKTIPIALMGKDVVGGAVTGSGKTAAFMVPILERL 294
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
L+RP ++P RV+ILTPTRELA+Q H++ K+A+FTDI+ CL GGLS K+QE LR P
Sbjct: 295 LHRPNKVPTTRVVILTPTRELAMQCHAVATKLARFTDIKFCLAAGGLSRKVQEAELRLRP 354
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D+V+ATPGR IDH+RNS S +D + +L+LDEADR+LE GF+ E++E++ PK RQTML
Sbjct: 355 DVVIATPGRFIDHMRNSASFAVDRVEILVLDEADRMLEDGFADELNEILTTLPKSRQTML 414
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T VD LI++ L KP+R+ D TLT+E VR+R RE + L+ +C
Sbjct: 415 FSATMTSSVDNLIRVGLNKPVRIMVDSQKATAGTLTQEFVRLRPGREEKRMGYLVHICKT 474
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+T +VIIF K+ AHR +I+FGL L AELHG+++Q QR+ ++E FR VD+L+AT
Sbjct: 475 LYTKRVIIFFRQKKVAHRARIIFGLLGLSCAELHGSMSQTQRIGSVEDFRDGKVDYLLAT 534
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+A+RGLDI V TVINY P++L YVHRVGRTARAGR G A+T + DR ++KA K
Sbjct: 535 DLASRGLDIKRVDTVINYEAPQNLEIYVHRVGRTARAGRSGVAITLAAEPDRKVVKAAVK 594
Query: 361 RA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 417
GSK+ SR++ KW +++ME+ + A+L+EE EER L EM+ K EN+I
Sbjct: 595 AGKAQGSKIVSRVIDPGDADKWQAQVDEMEEDIEAVLREEEEERQLAHVEMQVKKGENLI 654
Query: 418 AHKEEIFARPKRTWFVT 434
H+EEI +RPKRTWF T
Sbjct: 655 KHEEEIHSRPKRTWFET 671
>gi|242778101|ref|XP_002479171.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces stipitatus
ATCC 10500]
gi|218722790|gb|EED22208.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces stipitatus
ATCC 10500]
Length = 833
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 248/496 (50%), Positives = 342/496 (68%), Gaps = 16/496 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
NLSRP+LR A+G++KPTPIQ IP+AL G+D+ G A+TGSGKT AF +P LERLLY
Sbjct: 316 YNLSRPILRGLAAVGFTKPTPIQRKAIPVALLGKDVVGGAVTGSGKTGAFIIPILERLLY 375
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RP+++P RV IL PTRELAVQ +++ K+A +TDI C ++GG S + QE L+ PDI
Sbjct: 376 RPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLIGGFSLREQENVLKKRPDI 435
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 436 IIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFS 495
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T+ VD+LI++ L +P+RL D + TL +E VR+R RE + A L+ LC + +
Sbjct: 496 ATMTDSVDKLIRVGLNRPVRLMVDAKKQTAGTLVQEFVRLRPGREDKRLASLIHLCQQVY 555
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
++VIIF K+ AHR++++FGL LKAAELHG+++Q QR++++E FR V FL+ATDV
Sbjct: 556 AARVIIFFRQKKEAHRVRVIFGLFGLKAAELHGSMSQEQRIKSVEDFRDGKVAFLLATDV 615
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV+TVINY P+ Y+HRVGRTARAGR G A T D DR +++A K
Sbjct: 616 ASRGLDIKGVETVINYEAPQTHEIYLHRVGRTARAGRSGRACTLAADPDRKVVRAAVKAG 675
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR++ + K ++ IE + D+V AIL+EE+EE+ L + EM+ +K EN++ H
Sbjct: 676 KTQGAKIVSRVIGSEIQDKLAEEIEGLRDEVDAILREEKEEKELAQVEMQTSKGENLLKH 735
Query: 420 KEEIFARPKRTWFVTEKEKKLAVK----------ADKASIEKGKGSGNEVTSAQQAEDLK 469
+ EI +RPKRTWF TEKEK+ A K A + EK K SG E D K
Sbjct: 736 QTEIMSRPKRTWFETEKEKQEAQKRGLIELNGLDASLSKKEKRKLSGKEKKRLDDTRDRK 795
Query: 470 ---IKEKRKREREKNL 482
+ +K K+ERE N+
Sbjct: 796 EGRMWKKGKKERESNI 811
>gi|119494918|ref|XP_001264258.1| ATP-dependent RNA helicase (Drs1), putative [Neosartorya fischeri
NRRL 181]
gi|142982588|sp|A1D1R8.1|DRS1_NEOFI RecName: Full=ATP-dependent RNA helicase drs1
gi|119412420|gb|EAW22361.1| ATP-dependent RNA helicase (Drs1), putative [Neosartorya fischeri
NRRL 181]
Length = 819
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 228/445 (51%), Positives = 320/445 (71%), Gaps = 3/445 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ NLSRP+LR ++ ++ PTPIQ IP+AL G+DI GSA+TGSGKTAAF +P LERLL
Sbjct: 303 DFNLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLL 362
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+RP+++P RV IL PTRELAVQ +++ K+A TDI C +VGG S + QE L+ PD
Sbjct: 363 FRPRKVPTSRVAILMPTRELAVQCYNVATKLATHTDITFCQLVGGFSLREQENILKKRPD 422
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ P+ RQTMLF
Sbjct: 423 VIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPQSRQTMLF 482
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ VD+LI++ L +P+RL D LT+E VR+R RE + LL LC++
Sbjct: 483 SATMTDSVDKLIRVGLNRPVRLMVDSKKNTSMNLTQEFVRLRPGREDKRLGYLLYLCNEI 542
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+T +VI+F K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR+ V FL+ATD
Sbjct: 543 YTGRVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVENFREGKVAFLLATD 602
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+A+RGLDI GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++K+ K
Sbjct: 603 LASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKIVKSAVKA 662
Query: 362 A---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 418
G+K+ SR+V +W+ + +ED++ +LQEE+ E+ + +AEM+ TK ENMI
Sbjct: 663 GKAQGAKIVSRVVDPAVADEWAAKAKGLEDEIEEVLQEEKLEKQMAQAEMQVTKGENMIK 722
Query: 419 HKEEIFARPKRTWFVTEKEKKLAVK 443
H+ EI +RPKRTWF TE++K+ A K
Sbjct: 723 HEAEIMSRPKRTWFETERDKRAARK 747
>gi|70996226|ref|XP_752868.1| ATP-dependent RNA helicase (Drs1) [Aspergillus fumigatus Af293]
gi|74672247|sp|Q4WRV2.1|DRS1_ASPFU RecName: Full=ATP-dependent RNA helicase drs1
gi|66850503|gb|EAL90830.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus fumigatus
Af293]
gi|159131623|gb|EDP56736.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus fumigatus
A1163]
Length = 830
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/445 (51%), Positives = 320/445 (71%), Gaps = 3/445 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ NLSRP+LR ++ ++ PTPIQ IP+AL G+DI GSA+TGSGKTAAF +P LERLL
Sbjct: 314 DFNLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLL 373
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+RP+++P RV IL PTRELAVQ +++ K+A TDI C +VGG S + QE L+ PD
Sbjct: 374 FRPRKVPTSRVAILMPTRELAVQCYNVATKLATHTDITFCQLVGGFSLREQENILKKRPD 433
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLF
Sbjct: 434 VIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLF 493
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ VD+LI++ L +P+RL D LT+E VR+R RE + LL LC++
Sbjct: 494 SATMTDSVDKLIRVGLNRPVRLMVDSKKNTSMNLTQEFVRLRPGREDKRLGYLLYLCNEI 553
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+T +VI+F K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR+ V FL+ATD
Sbjct: 554 YTGRVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVENFREGKVAFLLATD 613
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+A+RGLDI GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++K+ K
Sbjct: 614 LASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKIVKSAVKA 673
Query: 362 A---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 418
G+K+ SR+V +W+ + +ED++ +LQEE+ E+ + +AEM+ TK EN+I
Sbjct: 674 GKAQGAKIVSRVVDPAVADEWAAKAKGLEDEIEEVLQEEKLEKQMAQAEMQVTKGENLIK 733
Query: 419 HKEEIFARPKRTWFVTEKEKKLAVK 443
H+ EI +RPKRTWF TE++K+ A K
Sbjct: 734 HEAEIMSRPKRTWFETERDKRAARK 758
>gi|392578431|gb|EIW71559.1| hypothetical protein TREMEDRAFT_27480 [Tremella mesenterica DSM
1558]
Length = 786
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 262/498 (52%), Positives = 346/498 (69%), Gaps = 14/498 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+NLSRPLLRA +L PTPIQA IPLAL GRDI GSA+TGSGKTAAF +P LERL Y
Sbjct: 211 MNLSRPLLRALTSLNLITPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPILERLTY 270
Query: 63 RPKR--IPAIRVLILTPTRELAVQVHSMIEKIAQ--FTDIRCCLVVGGLSTKMQETALRS 118
R + A RVLIL PTRELAVQ +K++ +IR L+VGGLS Q LR+
Sbjct: 271 RERGRGGQACRVLILCPTRELAVQCEEFGKKLSTQGGLNIRFALLVGGLSLNAQAQNLRT 330
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
+PDI++ATPGR+IDHL N+ S L L VL++DEADR+LE GF+ E++E+VR CP+ RQT
Sbjct: 331 LPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEADRMLEAGFTDELNEIVRSCPRGRQT 390
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
MLFSAT+T+ VDEL+KLSL KP+RL DP LT+E VRI+ + + LL+LC
Sbjct: 391 MLFSATMTDSVDELVKLSLDKPIRLFVDPKRNTAIGLTQEFVRIKS--DDTRSPSLLALC 448
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+T + IIF +K AH+++++FGL LKAAELHGNL+Q QRL ALE F+ VD+L+
Sbjct: 449 KRTVRERCIIFFRSKALAHQMRVVFGLCGLKAAELHGNLSQEQRLHALEEFKLGKVDYLL 508
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+A+RGLDI GV+TVINY P L Y HRVGRTARAGR+G ++T V + DR LLKA+
Sbjct: 509 ATDLASRGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSITLVGEADRKLLKAV 568
Query: 359 AKRA-GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 417
K++ +++ RI+ +++T SK +++M+D++ +L+EE+EE+ LR+A+ME TK ENMI
Sbjct: 569 IKQSEADEIRHRIIPSEAVTAMSKTLDEMKDEIQEVLKEEKEEKALRQADMEITKGENMI 628
Query: 418 AHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRE 477
AH+EEIF+RP RTWF +EKEK + A KA+ G S + + K K KR
Sbjct: 629 AHEEEIFSRPARTWFQSEKEKLASKNAGKAAYTSGFPSDPKTEKEE-------KTKLKRG 681
Query: 478 REKNLPRKERRKLEAARE 495
L RK +R+ A +E
Sbjct: 682 IYDGLSRKTKRRRIAMKE 699
>gi|328869268|gb|EGG17646.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 860
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 260/536 (48%), Positives = 352/536 (65%), Gaps = 20/536 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL+LSRPL +A LGY++PTPIQA IPL L G+DI SA TGSGKTAAF LP LERLL
Sbjct: 238 ELHLSRPLQKAVAKLGYTQPTPIQAKAIPLILNGKDILASATTGSGKTAAFILPILERLL 297
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
YR RVLI+ PTRELA+Q HS+ E +AQFT+++ CLVVGGLS K+QE LR PD
Sbjct: 298 YRDATHRVSRVLIVLPTRELALQCHSVFESLAQFTNVQSCLVVGGLSNKVQEHELRKRPD 357
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR+IDHL N+ V L+D+ +L+LDEADRLL++GF E++ +V CP RQT+LF
Sbjct: 358 VIIATPGRLIDHLLNAHDVGLEDIEILVLDEADRLLDMGFKDELNRVVESCPDGRQTLLF 417
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SATL++DV L KLSL++P+R++ D + STL +E ++I+ + ++ A+LLSLC++
Sbjct: 418 SATLSDDVKLLAKLSLSQPVRVAVDALFQVASTLEQEFIKIKPGQLADRTAMLLSLCTRV 477
Query: 242 FT-SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
F I+F +K+ HR+ IL GL+ LK ELHG+L Q QR EAL+ FR VDFL+AT
Sbjct: 478 FNGGGCIVFFRSKKEVHRIAILLGLSGLKVGELHGDLNQEQRFEALQSFRNGEVDFLLAT 537
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARGLD++GV+TVINY PR L Y+HRVGRTARAG G + +F+T+ DR +LK I
Sbjct: 538 DIAARGLDVLGVRTVINYNMPRSLAQYIHRVGRTARAGLAGRSCSFITEADRKILKDIVS 597
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAE----NM 416
RA +K KSR VA++SI W I++M D V I++EE E +K E + KAE N
Sbjct: 598 RAKTKAKSRTVAQESIKLWRAKIDEMTDDVKDIIREELRELDFKKTEKDLMKAERIVANA 657
Query: 417 IAHKEEIF--------ARP-KRTWFVTEKEKKLAVKADKA--SIEKGKGSGNEVTSAQQA 465
+ HK+ I A P +R WF ++KE++ + +A K I G V + A
Sbjct: 658 LGHKKLITDNGGIIPEAAPMERVWFQSKKEREESREAWKTENGIVSMDKDGKPVAGGKPA 717
Query: 466 EDLKIKEKRKREREKNLPRKERRKL----EAAREMLEDEDQVDKLQGSGKDKKEKA 517
+ +K ++ + RK+RR + E AR+M E ED + G KKE A
Sbjct: 718 RKGVLLKKAPKDPYAGMSRKKRRSVMHREEMARDMAEQEDAFEGGSGGQPSKKEVA 773
>gi|346324903|gb|EGX94500.1| ATP-dependent RNA helicase (Drs1), putative [Cordyceps militaris
CM01]
Length = 769
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 231/450 (51%), Positives = 315/450 (70%), Gaps = 3/450 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRP+LR +G++KPTPIQ+ IP+AL G+DI G A+TGSGKT AF +P LERLLY
Sbjct: 256 MSLSRPILRGLTNVGFTKPTPIQSKTIPIALMGKDIVGGAVTGSGKTGAFIIPILERLLY 315
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK+IP RV++LTPTRELA+Q H++ K+A TDI+ L VGGLS K+QE LR PD+
Sbjct: 316 RPKKIPTTRVVVLTPTRELAIQCHAVATKLAAHTDIKFTLAVGGLSLKVQEAELRLRPDV 375
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D + +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 376 IIATPGRFIDHMRNSASFPIDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFS 435
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD LI+L + KP R+ D + TL +E VR+R RE + L LC +
Sbjct: 436 ATMTSTVDRLIRLGMNKPARVMVDSQKRTVGTLVQEFVRLRPGRENKRMGYLTHLCKTLY 495
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T +VI+F K+ AH +I+F + + AELHG+++Q R+E++E FR V++L+ATD+
Sbjct: 496 TERVIVFFRQKKDAHEARIIFSILGMTCAELHGSMSQTGRIESVEAFRDGKVNYLLATDL 555
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV TVINY P+ L YVHRVGRTARAGR+G A+T ++DR ++KA K
Sbjct: 556 ASRGLDIRGVDTVINYEAPQSLEIYVHRVGRTARAGRKGVALTLAAESDRKVVKAAVKAG 615
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SRIV + K I+ ME ++ I++EE+EE+ +AEM+ K ENMI H
Sbjct: 616 KAQGAKVTSRIVEAEKADKLQAEIDGMEQEIKEIMREEKEEKHFAQAEMQVRKGENMIEH 675
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKADKASI 449
+ EI +RPKRTWF TE EK A +A K +
Sbjct: 676 EAEIKSRPKRTWFETEHEKGKAKEAGKTEL 705
>gi|326932134|ref|XP_003212175.1| PREDICTED: hypothetical protein LOC100549747 [Meleagris gallopavo]
Length = 1561
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 266/603 (44%), Positives = 387/603 (64%), Gaps = 30/603 (4%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A ALG+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAF LP LERL+
Sbjct: 987 DMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVLERLI 1046
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ +++AQF+ + CL VGGL K QE ALRS PD
Sbjct: 1047 YKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTSCLAVGGLDVKTQEAALRSGPD 1106
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++RLC K RQTMLF
Sbjct: 1107 ILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSKHRQTMLF 1166
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+TE+V +L +SL P R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 1167 SATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALLTRT 1226
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F V++F+ TK+ AHR+ IL GL L+ ELHGNL+QAQRLEAL F+ + +D L+ATD
Sbjct: 1227 FPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQIDILVATD 1286
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P YVHRVGRTARAGR G +V+ V + +R +LK I K
Sbjct: 1287 VAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKS 1346
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ + IE +E V A+L EREER ++++E + KA+ + K
Sbjct: 1347 AKTPVKARILPQDVILKFREKIENLEKDVYAVLCLEREEREMQQSEAQINKAKKQLEEGK 1406
Query: 421 EEIFARP-KRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRERE 479
+E + +R+WF T +E+K ++ A Q DL ++ K+KR
Sbjct: 1407 QETATKGVERSWFQTREERK----------------KEKLAKALQEFDLALRGKKKR--- 1447
Query: 480 KNLPRKERRKLEAAREMLEDEDQVDKLQGSGKDKKEKAGISMVDLAYRRAKAVKAKQKAL 539
K + +RK++ E+ Q + L K + ++ + +RA+A+ ++ A
Sbjct: 1448 KKFMQDTQRKVQMTP---EERSQFEIL----KSQMYAERLAKRNRRLKRARALPEEEPAT 1500
Query: 540 DAGKIVKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHSFKSKSRY 599
A K K K S + +N+ K +++ + + +S + +KR G ++ +FKSKSRY
Sbjct: 1501 -APKGPKQKKKVSVFDEELTNTSRKALKQ-YRAGLSFEDRKRLGMAQRRKGGNFKSKSRY 1558
Query: 600 KRR 602
KR+
Sbjct: 1559 KRK 1561
>gi|310791457|gb|EFQ26984.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 772
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 246/518 (47%), Positives = 348/518 (67%), Gaps = 26/518 (5%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRPLLR A+G+SKPTPIQA IP+AL G+D+ G A+TGSGKT AF +P LERLLY
Sbjct: 252 MSLSRPLLRGLAAVGFSKPTPIQAKTIPIALMGKDVVGGAVTGSGKTGAFVVPILERLLY 311
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK++P RV+ILTPTRELA+Q H++ K+A +TDI+ L VGGLS K QE LR PD+
Sbjct: 312 RPKKVPTSRVVILTPTRELAIQCHAVATKLAAYTDIKFTLAVGGLSLKAQEVELRLRPDV 371
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S ++D + +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 372 IIATPGRFIDHMRNSASFNVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFS 431
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSKT 241
AT+T VD+L++L + KP R+ D + TL +E VR+R RE + L+ +C
Sbjct: 432 ATMTSSVDKLVRLGMNKPARVMVDSQKNKTVGTLVQEFVRLRPGREEKRMGYLVHICKTM 491
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
T +VI+F K+ AHR +I+FGL + AELHG++ QAQR+ ++E FR V++L+ATD
Sbjct: 492 HTERVIVFFRQKKEAHRARIIFGLLGMSCAELHGSMNQAQRIASVENFRDGKVNYLLATD 551
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+A+RGLDI GV TVINY P+++ YVHRVGRTARAGR G A+T + DR ++KA K
Sbjct: 552 LASRGLDIKGVDTVINYEAPQNIEIYVHRVGRTARAGRTGIAITLAAEPDRKVVKAAVKA 611
Query: 362 A---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 418
G+K+ SRI+ KW +++MED++ I+ EE++E+ +AEM+ K EN++
Sbjct: 612 GKAQGAKIMSRIIEPAEADKWQAQVDEMEDEIEEIMVEEKQEKQFAQAEMQVRKGENILQ 671
Query: 419 HKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQ---------QAEDLK 469
H+ EI ARPKRTWF TE++KK A +A + + KG ++++ ++ED
Sbjct: 672 HEAEIKARPKRTWFETEQDKKKAKEAGREELNGPKGKKQKLSNKDKKKLDAKAMRSEDKV 731
Query: 470 IKEKR-------------KREREKNLPRKERRKLEAAR 494
K+ R K+ ++KN+P K R + AR
Sbjct: 732 WKKGRAERAGQGAVLNLKKQPKKKNVPAKGRTRARLAR 769
>gi|380487114|emb|CCF38253.1| DEAD/DEAH box helicase [Colletotrichum higginsianum]
Length = 777
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 244/519 (47%), Positives = 350/519 (67%), Gaps = 26/519 (5%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRPLLR A+G+SKPTPIQA +P+AL G+D+ G A+TGSGKTAAF +P LERLLY
Sbjct: 257 MSLSRPLLRGLAAVGFSKPTPIQAKTVPIALMGKDVVGGAVTGSGKTAAFVVPILERLLY 316
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK++P RV+ILTPTRELA+Q H++ K+A +TDI+ L VGGLS K QE LR PD+
Sbjct: 317 RPKKVPTSRVVILTPTRELAIQCHAVATKLAAYTDIKFTLAVGGLSLKAQEVELRLRPDV 376
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S ++D + +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 377 IIATPGRFIDHMRNSASFNVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFS 436
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSKT 241
AT+T VD+L+++ + KP R+ D + TL +E VR+R RE + L+ +C
Sbjct: 437 ATMTSSVDKLVRVGMNKPARVMVDSQKNKTVGTLVQEFVRLRPGREDKRMGYLVHICKTM 496
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
T +VI+F K+ AHR +I+FGL + AELHG++ QAQR+ ++E FR V++L+ATD
Sbjct: 497 HTERVIVFFRQKKEAHRARIIFGLLGMSCAELHGSMNQAQRIASVENFRDGKVNYLLATD 556
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+A+RGLDI GV TVINY P+++ YVHRVGRTARAGR G A+T + DR ++KA K
Sbjct: 557 LASRGLDIKGVDTVINYEAPQNIEIYVHRVGRTARAGRTGIAITLAAEPDRKVVKAAVKA 616
Query: 362 A---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 418
G+K+ SR++ KW +++MED++ I+ EE++E+ +AEM+ K EN++
Sbjct: 617 GKAQGAKIMSRVIEPTEADKWQAQVDEMEDEIEEIMVEEKQEKQFAQAEMQVRKGENILQ 676
Query: 419 HKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQ---------QAEDLK 469
H+ EI RPKRTWF TE++KK A +A + + KG ++++ ++ED
Sbjct: 677 HEAEIKGRPKRTWFETEQDKKKAKEAGRDELNGPKGKKQKLSNKDKKKLDAKAMRSEDKV 736
Query: 470 IKEKR-------------KREREKNLPRKERRKLEAARE 495
K+ R K+ ++KN+P K R + + ARE
Sbjct: 737 WKKGRAERAGQGAVLNLKKQPKKKNVPAKGRTRAKLARE 775
>gi|19114126|ref|NP_593214.1| ATP-dependent RNA helicase Ddx27/Drs1 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|1351656|sp|Q09903.1|DRS1_SCHPO RecName: Full=ATP-dependent RNA helicase drs1
gi|1065890|emb|CAA91889.1| ATP-dependent RNA helicase Ddx27/Drs1 (predicted)
[Schizosaccharomyces pombe]
Length = 754
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 240/486 (49%), Positives = 335/486 (68%), Gaps = 23/486 (4%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+NLSRP+L+ LG+ PT IQ IPLAL G+DI G+A+TGSGKTAAF +P LERLLY
Sbjct: 264 MNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLY 323
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK++P RVLIL PTRELA+Q HS+ KIA FTDI CL +GGLS K+QE LR PDI
Sbjct: 324 RPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDI 383
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V+ATPGR IDH+RNS ++++ ++++DEADR+LE GF+ E++E+++ CPK RQTMLFS
Sbjct: 384 VIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFS 443
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T+ VD+LI+LSL +P+R+ D LT+E VR+R RE+ + A+L+ LC + F
Sbjct: 444 ATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYLCKELF 503
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+ IIF +K AH+++++FGL +L A E+HG+L+Q QR+ ALE FR ++L+ATDV
Sbjct: 504 HRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDV 563
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RG+DI G++ VINY P Y+HRVGRTARAGR G A+T + DR +LK + K +
Sbjct: 564 ASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVLKGVFKNS 623
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
+KL +R + + K+ K IE++E V +L EE++ER L+ AE + K EN++ +
Sbjct: 624 SAQNTKLVNRNLDFNKVEKFGKEIEELEPVVQKVLDEEKQERELKIAERDLKKGENIMKY 683
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRERE 479
+EI +RP RTWF +EK+K +A KAS +A+D K KRK++ E
Sbjct: 684 GDEIRSRPARTWFQSEKDK----QASKAS---------------EAKDKKSLAKRKKQME 724
Query: 480 K-NLPR 484
K +PR
Sbjct: 725 KEEVPR 730
>gi|281208721|gb|EFA82896.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 803
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 260/510 (50%), Positives = 348/510 (68%), Gaps = 14/510 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL+LSRPL +A + LG++ PTPIQA IP + C A TGSGKTAAF LP LERLL
Sbjct: 185 ELHLSRPLQKAVQKLGFTMPTPIQAKTIPPSTQ----C--ATTGSGKTAAFLLPILERLL 238
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
YR AIRVL+L PTRELA+Q S++E +AQFT+I CLVVGGLS K+QE LR PD
Sbjct: 239 YRDVDNRAIRVLVLLPTRELALQCQSVLENLAQFTNITSCLVVGGLSNKVQEVELRKRPD 298
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+V+ATPGR+IDHL N+ V LDDL +L+LDEADRLL++GF E+ ++V CP RQ++LF
Sbjct: 299 VVIATPGRLIDHLLNAHDVGLDDLEILVLDEADRLLDMGFKDELEKIVESCPANRQSLLF 358
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SATL+++V L KLSL +P+R++ D + STL +E V+IR + ++ A+LLSL S+
Sbjct: 359 SATLSDEVKTLAKLSLKQPIRVAVDALYQVASTLEQEFVKIRPTQLGDRPALLLSLASRV 418
Query: 242 F-TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
F T IIF +K+ HRL I+FGLA L AAELHG+L+Q QR E+L+LFR V FL+A+
Sbjct: 419 FNTGGTIIFFKSKKEVHRLCIIFGLAGLSAAELHGDLSQEQRFESLQLFRDGKVQFLLAS 478
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD++GV+TVINY PR+L Y+HRVGRTARAG +G A +FVT+ DR +LK I
Sbjct: 479 DVAARGLDVLGVKTVINYNIPRNLAQYIHRVGRTARAGAQGRACSFVTEGDRKILKDIVS 538
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
RA +K KSR V+++S+ W I++M D + +I++EE +E +RKAE E K E +I+
Sbjct: 539 RAKTKAKSRTVSQESVKYWRNKIDEMADDIKSIIKEELKEMDIRKAEKEIRKVEKLISTS 598
Query: 421 EEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAE-DLKIKEKRKRERE 479
+ ++ WF T EK A +A K I++G E+ +Q E D K +K R+
Sbjct: 599 SSKSSSMEKEWFATNSEKAKAKEAWK--IQEGIIDPEELKRQKQEELDKKAGKKADRDPY 656
Query: 480 KNLPRKERR----KLEAAREMLEDEDQVDK 505
L R++RR + E AREM E E D+
Sbjct: 657 LGLSRRKRRSKMHREEIAREMAEAEQSDDE 686
>gi|296200672|ref|XP_002747679.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Callithrix
jacchus]
Length = 764
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 225/439 (51%), Positives = 317/439 (72%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 190 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 249
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P+R P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR+ PD
Sbjct: 250 YKPRRGPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEVALRAAPD 309
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 310 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 369
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 370 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT 429
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 430 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQMQRLEALRRFKDEQIDILVATD 489
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK I K
Sbjct: 490 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKA 549
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + + K+ IE+ME V A+LQ E EE+ ++++E + A+ ++ K
Sbjct: 550 AKAPVKARILPQDVVLKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGK 609
Query: 421 EEIFARPKRTWFVTEKEKK 439
E + P+R+WF T++E+K
Sbjct: 610 EAVVQEPERSWFQTKEERK 628
>gi|221043088|dbj|BAH13221.1| unnamed protein product [Homo sapiens]
Length = 765
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 225/439 (51%), Positives = 317/439 (72%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 191 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 250
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR+ PD
Sbjct: 251 YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPD 310
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 311 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 370
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 371 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT 430
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 431 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 490
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK I K
Sbjct: 491 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKA 550
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++ K
Sbjct: 551 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGK 610
Query: 421 EEIFARPKRTWFVTEKEKK 439
E + P+R+WF T++E+K
Sbjct: 611 EAVVQEPERSWFQTKEERK 629
>gi|40225538|gb|AAH11927.2| DDX27 protein, partial [Homo sapiens]
gi|48257213|gb|AAH16060.2| DDX27 protein, partial [Homo sapiens]
Length = 767
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 225/439 (51%), Positives = 317/439 (72%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 193 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 252
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR+ PD
Sbjct: 253 YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPD 312
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 313 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 372
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 373 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT 432
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 433 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 492
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK I K
Sbjct: 493 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKA 552
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++ K
Sbjct: 553 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGK 612
Query: 421 EEIFARPKRTWFVTEKEKK 439
E + P+R+WF T++E+K
Sbjct: 613 EAVVQEPERSWFQTKEERK 631
>gi|189342956|gb|ACD91989.1| DEAD box polypeptide 27 [Homo sapiens]
gi|313883628|gb|ADR83300.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [synthetic construct]
Length = 765
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 225/439 (51%), Positives = 317/439 (72%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 191 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 250
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR+ PD
Sbjct: 251 YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPD 310
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 311 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 370
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 371 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT 430
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 431 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 490
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK I K
Sbjct: 491 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKA 550
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++ K
Sbjct: 551 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGK 610
Query: 421 EEIFARPKRTWFVTEKEKK 439
E + P+R+WF T++E+K
Sbjct: 611 EAVVQEPERSWFQTKEERK 629
>gi|429859431|gb|ELA34212.1| ATP-dependent RNA helicase drs1 [Colletotrichum gloeosporioides
Nara gc5]
Length = 772
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 234/457 (51%), Positives = 323/457 (70%), Gaps = 3/457 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRPLLR A+G+SKPTPIQA +P+AL G+D+ G A+TGSGKTAAF +P LERLLY
Sbjct: 254 MSLSRPLLRGLAAVGFSKPTPIQAKTVPIALMGKDVVGGAVTGSGKTAAFVVPILERLLY 313
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK++P RV+ILTPTRELA+Q H++ K+A +TDI+ L VGGLS K QE LR PD+
Sbjct: 314 RPKKVPTSRVVILTPTRELAIQCHAVATKLAAYTDIKFTLAVGGLSLKQQEVELRLRPDV 373
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S ++D + +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 374 IIATPGRFIDHMRNSASFNVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFS 433
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD L+++ + KP R+ D K TL +E +R+R RE + L+ +C
Sbjct: 434 ATMTSSVDRLVRVGMNKPARVMVDSQKKTVGTLVQEFIRLRPGREEKRMGYLIHICKTMH 493
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T +VIIF K+ AHR +I+FG+ + AELHG++ QAQR+ ++E FR V++L+ATD+
Sbjct: 494 TERVIIFFRQKKEAHRARIIFGMLGMSCAELHGSMNQAQRIASVENFRDGKVNYLLATDL 553
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV TVINY P+ L YVHRVGRTARAGR G AVT + DR ++KA K
Sbjct: 554 ASRGLDIKGVDTVINYEAPQKLEIYVHRVGRTARAGRSGVAVTLAAEPDRKVVKAAVKAG 613
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR++ KW +++MED++ I+ EE++E+ +AEM+ K EN++ H
Sbjct: 614 KSQGAKIMSRVIEPAEADKWQAQVDEMEDEIEEIIVEEKQEKQFAQAEMQVRKGENILEH 673
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSG 456
+ EI +RPKRTWF TE++KK A A +A + G G
Sbjct: 674 EAEIKSRPKRTWFETEQDKKKAKDAGRAELNGEGGPG 710
>gi|109091647|ref|XP_001099400.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Macaca
mulatta]
gi|355563050|gb|EHH19612.1| Putative ATP-dependent RNA helicase DDX27 [Macaca mulatta]
gi|355784407|gb|EHH65258.1| Putative ATP-dependent RNA helicase DDX27 [Macaca fascicularis]
Length = 763
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 225/439 (51%), Positives = 316/439 (71%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 189 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 248
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR+ PD
Sbjct: 249 YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPD 308
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 309 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 368
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 369 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT 428
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 429 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 488
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK I K
Sbjct: 489 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKA 548
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++ K
Sbjct: 549 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGK 608
Query: 421 EEIFARPKRTWFVTEKEKK 439
E + P+R WF T++E+K
Sbjct: 609 EAVVQEPERNWFQTKEERK 627
>gi|358392056|gb|EHK41460.1| hypothetical protein TRIATDRAFT_162817, partial [Trichoderma
atroviride IMI 206040]
Length = 760
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 250/488 (51%), Positives = 335/488 (68%), Gaps = 9/488 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRP++R A+G++KPTPIQA IP+AL G+D+ G A+TGSGKTAAF LP LERLLY
Sbjct: 250 MSLSRPIMRGITAVGFTKPTPIQAKTIPIALMGKDVVGGAVTGSGKTAAFVLPILERLLY 309
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK+IP RV+ILTPTRELA+Q H++ K+A TDI+ L VGGLS K QET LR PD+
Sbjct: 310 RPKKIPTTRVVILTPTRELAIQCHAVATKLAAHTDIKFTLAVGGLSLKAQETELRLRPDV 369
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D + +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 370 IIATPGRFIDHMRNSASFSVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFS 429
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD LIK+ L KP+R+ D K TL +E VR+R RE + L +C +
Sbjct: 430 ATMTSTVDRLIKVGLNKPVRVMVDSQKKTAGTLIQEFVRLRPGREEKRMGYLAHICKNFY 489
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T KVIIF K+ AHR +I+FGL AELHG++ Q QR+ ++E FR V +L+ATD+
Sbjct: 490 TEKVIIFFRQKKDAHRARIIFGLLGFSCAELHGSMNQTQRIASVENFRDGKVSYLLATDL 549
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV TVINY P+ + YVHRVGRTARAGR G +VT + DR ++KA K
Sbjct: 550 ASRGLDIKGVDTVINYEAPQSVEIYVHRVGRTARAGRTGISVTLAAEPDRKVVKAAVKAG 609
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
GSK+ SRI+ + KW I++M+D++ I +EE+EER L + EM+ K+EN+I H
Sbjct: 610 KAQGSKIISRIIEAKDADKWQAEIDEMDDEIEEIEKEEKEERQLAQVEMQIKKSENIIKH 669
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKADKA------SIEKGKGSGNEVTSAQQAEDLKIKEK 473
++EI ARPKRTWF T+ +K A KA K S +K GS ++ DLK++
Sbjct: 670 EDEIKARPKRTWFETQHDKDNAKKAGKEELNGPRSAKKKAGSTKLSNKDKKRADLKMQRA 729
Query: 474 RKREREKN 481
+E +K+
Sbjct: 730 EGKEWKKS 737
>gi|196003440|ref|XP_002111587.1| hypothetical protein TRIADDRAFT_23405 [Trichoplax adhaerens]
gi|190585486|gb|EDV25554.1| hypothetical protein TRIADDRAFT_23405, partial [Trichoplax
adhaerens]
Length = 463
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 231/435 (53%), Positives = 309/435 (71%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A LG+ PTPIQ++ IP+AL G+DIC A TG+GKTAAF LP LERL+
Sbjct: 21 DINLSRPLLKAISTLGFEHPTPIQSSTIPIALLGKDICACAATGTGKTAAFMLPILERLI 80
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
YRPKRIP RVL+L PTRELA+QV S+ + + Q+TDI CL GGL QE ALR PD
Sbjct: 81 YRPKRIPVTRVLVLVPTRELAIQVFSVGKSLCQYTDIEFCLAAGGLDIASQEAALRRNPD 140
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR++DHL N+ S DL + +L+LDEADR + F ++ EL+RL PK RQTMLF
Sbjct: 141 IVIATPGRLVDHLHNTPSFDLQGIEILVLDEADRQIHEHFKDQMDELIRLSPKGRQTMLF 200
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V+EL LSL KP+RL + + + L +E +RIR RE ++EA++ +LC +
Sbjct: 201 SATMTDEVEELATLSLNKPIRLFINRNTDVANNLRQEFIRIRPAREDDREAIIAALCYRQ 260
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F + +IF K HRL+I+ GL L ELHGNLTQ QRLEA F+K + L+ATD
Sbjct: 261 FNERCLIFMPMKWQVHRLRIVLGLLGLSVDELHGNLTQLQRLEAFNRFKKGEIGILVATD 320
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARGLDI GV+TVINY P YVHRVGRTARAG+ G ++T V + +R LLK I K
Sbjct: 321 LAARGLDIEGVRTVINYNIPATTKQYVHRVGRTARAGQFGRSITLVVEKERKLLKTIVKN 380
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 421
+ + +KSRI++ + ITK+ + I++++ + IL+ E EE+ R +EME KA+N+I H+E
Sbjct: 381 SKTAVKSRIISPEIITKYKRKIQKIQADIKDILKAEEEEKAFRVSEMEVNKAKNLIIHEE 440
Query: 422 EIFARPKRTWFVTEK 436
EI +RPKRT+ EK
Sbjct: 441 EIHSRPKRTFIQAEK 455
>gi|57529371|ref|NP_001006293.1| probable ATP-dependent RNA helicase DDX27 [Gallus gallus]
gi|53130268|emb|CAG31463.1| hypothetical protein RCJMB04_6k21 [Gallus gallus]
Length = 758
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 265/603 (43%), Positives = 387/603 (64%), Gaps = 30/603 (4%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A ALG+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAF LP LERL+
Sbjct: 184 DMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVLERLI 243
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ +++AQF+ + CL VGGL K QE ALRS PD
Sbjct: 244 YKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDVKTQEAALRSGPD 303
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++RLC + RQTMLF
Sbjct: 304 ILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSRHRQTMLF 363
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+TE+V +L +SL P R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 364 SATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALLTRT 423
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F V++F+ TK+ AHR+ IL GL L+ ELHGNL+QAQRLEAL F+ + +D L+ATD
Sbjct: 424 FPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQIDILVATD 483
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P YVHRVGRTARAGR G +V+ V + +R +LK I K
Sbjct: 484 VAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKA 543
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ + IE +E V A+L EREER ++++E + KA+ + K
Sbjct: 544 AKTPVKARILPQDVILKFREKIENLEKDVYAVLCLEREEREMQQSEAQINKAKKQLEEGK 603
Query: 421 EEIFARP-KRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRERE 479
+E + +R+WF T +E+K ++ A Q DL ++ K+KR
Sbjct: 604 QEAATKGVERSWFQTREERK----------------KEKLAKALQEFDLALRGKKKR--- 644
Query: 480 KNLPRKERRKLEAAREMLEDEDQVDKLQGSGKDKKEKAGISMVDLAYRRAKAVKAKQKAL 539
K + +RK A+ E+ Q + L+ ++ ++ + +RA+A+ ++ A
Sbjct: 645 KKFMQDTQRK---AQMTPEERSQFEILKSQMYAER----LAKRNRRVKRARALPEEEPAA 697
Query: 540 DAGKIVKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHSFKSKSRY 599
A K K K S + +N+ K +++ + + S + +KR G ++ +FKSKSRY
Sbjct: 698 -APKGPKRKKKVSVFDEELTNTSRKALKQ-YRAGPSFEDRKRLGMAQRRKGGNFKSKSRY 755
Query: 600 KRR 602
KR+
Sbjct: 756 KRK 758
>gi|142982528|sp|A2QAX7.1|DRS1_ASPNC RecName: Full=ATP-dependent RNA helicase drs1
gi|134055839|emb|CAK37361.1| unnamed protein product [Aspergillus niger]
Length = 824
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 242/500 (48%), Positives = 336/500 (67%), Gaps = 24/500 (4%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E NLSRP+LR + +S PTPIQ IP+AL G+DI GSA+TGSGKTAAF +P LERLL
Sbjct: 313 EFNLSRPILRGLAGVNFSNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLL 372
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+RP+++P RV IL PTRELAVQ +++ K+A +TDI C +VGG S + QE L+ PD
Sbjct: 373 FRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKRPD 432
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLF
Sbjct: 433 VIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLF 492
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ VD+LI++ L +P+RL D TL +E VR+R RE + LL LC +
Sbjct: 493 SATMTDTVDKLIRVGLNRPVRLMVDAKKNTAVTLVQEFVRLRPGREDKRLGYLLYLCKEI 552
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+T +VI+F K+ AHR++I+FGL LKAAELHG+++Q Q ++E FR+ FL+ATD
Sbjct: 553 YTGRVIVFFRQKKEAHRVRIIFGLLGLKAAELHGSMSQEQ---SVENFREGKAAFLLATD 609
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+A+RGLDI GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++KA K
Sbjct: 610 LASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKA 669
Query: 362 A---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 418
G+K+ SR++ W+ E++ D+V +L EE+ E+ L +AEM+ TK EN+I
Sbjct: 670 GKSQGAKIASRVIEPAVADSWAAKAEELADEVEEVLSEEKLEKQLAQAEMQVTKGENLIK 729
Query: 419 HKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRER 478
H+ EI +RPKRTWF TE++KK A K A + G +G + KEK+K
Sbjct: 730 HEAEIKSRPKRTWFETERDKKAARKLGAAEL-NGPDAG-----------MSKKEKQK--- 774
Query: 479 EKNLPRKERRKLEAAREMLE 498
L K++++L+ +R+ E
Sbjct: 775 ---LSNKDKKRLDDSRQRQE 791
>gi|32425487|gb|AAH09304.2| DDX27 protein, partial [Homo sapiens]
Length = 769
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 225/439 (51%), Positives = 317/439 (72%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 195 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 254
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR+ PD
Sbjct: 255 YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPD 314
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 315 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 374
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 375 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT 434
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 435 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 494
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK I K
Sbjct: 495 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKA 554
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++ K
Sbjct: 555 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGK 614
Query: 421 EEIFARPKRTWFVTEKEKK 439
E + P+R+WF T++E+K
Sbjct: 615 EAVVQEPERSWFQTKEERK 633
>gi|114682555|ref|XP_001166506.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 isoform 5 [Pan
troglodytes]
Length = 796
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 225/439 (51%), Positives = 317/439 (72%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 222 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 281
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR+ PD
Sbjct: 282 YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPD 341
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 342 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 401
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 402 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT 461
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 462 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 521
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK I K
Sbjct: 522 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKA 581
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++ K
Sbjct: 582 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGK 641
Query: 421 EEIFARPKRTWFVTEKEKK 439
E + P+R+WF T++E+K
Sbjct: 642 EAVVQEPERSWFQTKEERK 660
>gi|224593278|ref|NP_060365.7| probable ATP-dependent RNA helicase DDX27 [Homo sapiens]
gi|29427946|sp|Q96GQ7.2|DDX27_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
Full=DEAD box protein 27
gi|116497013|gb|AAI26288.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
gi|119596072|gb|EAW75666.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, isoform CRA_b [Homo
sapiens]
gi|120660308|gb|AAI30276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
gi|219519028|gb|AAI44126.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
gi|313883552|gb|ADR83262.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [synthetic construct]
Length = 796
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 225/439 (51%), Positives = 317/439 (72%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 222 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 281
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR+ PD
Sbjct: 282 YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPD 341
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 342 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 401
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 402 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT 461
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 462 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 521
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK I K
Sbjct: 522 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKA 581
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++ K
Sbjct: 582 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGK 641
Query: 421 EEIFARPKRTWFVTEKEKK 439
E + P+R+WF T++E+K
Sbjct: 642 EAVVQEPERSWFQTKEERK 660
>gi|410953778|ref|XP_003983547.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27 [Felis catus]
Length = 920
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 226/439 (51%), Positives = 318/439 (72%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 345 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 404
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ +++AQF +I CL VGGL K QE ALR+ PD
Sbjct: 405 YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAAPD 464
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 465 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 524
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E VRIR RE ++EA++ +L ++T
Sbjct: 525 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAALLTRT 584
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 585 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 644
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K
Sbjct: 645 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKA 704
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 421
A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ L+++E++ A+ ++ +
Sbjct: 705 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKELQQSEVQINTAKRLLEKGK 764
Query: 422 EIFAR-PKRTWFVTEKEKK 439
E+ P+R+WF T++E+K
Sbjct: 765 EVLNHEPERSWFQTKEERK 783
>gi|212533429|ref|XP_002146871.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces marneffei
ATCC 18224]
gi|210072235|gb|EEA26324.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces marneffei
ATCC 18224]
Length = 826
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 246/495 (49%), Positives = 343/495 (69%), Gaps = 21/495 (4%)
Query: 4 NLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYR 63
NLSRP+LR A+G++KPTPIQ IP+AL G+D+ G A+TGSGKT AF +P LERLLYR
Sbjct: 310 NLSRPILRGLAAVGFTKPTPIQRKAIPVALLGKDVVGGAVTGSGKTGAFIIPILERLLYR 369
Query: 64 PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIV 123
+++P RV IL PTRELAVQ ++ K+A +TDI C ++GG S + QE L+ PDI+
Sbjct: 370 QRKVPTSRVAILMPTRELAVQCFNVATKLATYTDITFCQLIGGFSLREQENILKKRPDII 429
Query: 124 VATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSA 183
+ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFSA
Sbjct: 430 IATPGRFIDHMRNSSSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFSA 489
Query: 184 TLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFT 243
T+T+ VD+LI++ L +P+RL D + TL +E VR+R RE + A L+ LC + +T
Sbjct: 490 TMTDSVDKLIRVGLNRPVRLMVDAKKQTAGTLVQEFVRLRPGREDKRLASLIHLCQQVYT 549
Query: 244 SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA 303
S+VIIF K+ AHR++++FGL LKAAELHG+++Q QR++++E FR V FL+ATDVA
Sbjct: 550 SRVIIFFRQKKEAHRVRVIFGLFGLKAAELHGSMSQEQRIKSVEDFRDGKVAFLLATDVA 609
Query: 304 ARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA- 362
+RGLDI GV+TVINY P+ Y+HRVGRTARAGR G A T D DR +++A K
Sbjct: 610 SRGLDIKGVETVINYEAPQTHEIYLHRVGRTARAGRSGRACTLAADPDRKVVRAAVKAGK 669
Query: 363 --GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
G+K+ SR++ + + + IE ++D++ AIL+EE+EE+ L + EM+ +K EN++ H+
Sbjct: 670 TQGAKIISRVIGSEIQDELATEIEDLQDEIDAILREEKEEKELAQVEMQTSKGENLLKHQ 729
Query: 421 EEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREK 480
EI +RPKRTWF TEKEK+ A K +G N + ++ L KEKRK
Sbjct: 730 TEIMSRPKRTWFETEKEKQEAQK-------RGLIELNGLDAS-----LSKKEKRK----- 772
Query: 481 NLPRKERRKLEAARE 495
L KE++KL+ R+
Sbjct: 773 -LSGKEKKKLDDTRD 786
>gi|440636791|gb|ELR06710.1| hypothetical protein GMDG_00327 [Geomyces destructans 20631-21]
Length = 787
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 247/507 (48%), Positives = 347/507 (68%), Gaps = 19/507 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRP+ R A G+S PTPIQA IP+AL G+D+ G A+TGSGKTAAF +P LERLLY
Sbjct: 268 MSLSRPIHRGLAACGFSAPTPIQAKTIPVALLGKDVVGGAVTGSGKTAAFIVPVLERLLY 327
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK++P RV IL PTRELA+Q H++ K+A +TDI+ CL VGGLS K+QE LR PDI
Sbjct: 328 RPKKVPTSRVAILMPTRELAIQCHAVATKLASYTDIKFCLAVGGLSLKIQEAELRLRPDI 387
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 388 IIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFS 447
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD+LI++ L +P+RL D +TL +E VR+R RE + LL LC K F
Sbjct: 448 ATMTSSVDKLIRVGLNRPVRLMVDAQRSTVTTLVQEFVRLRPGREDKRMGYLLYLCQKVF 507
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+KVI+F K+ AHR +++FGL+ +KAAELHG+L+Q QR+ ++E FR V +L+ATD+
Sbjct: 508 HNKVIVFFRQKKEAHRARVIFGLSGMKAAELHGSLSQEQRIASVEAFRDGKVSYLLATDL 567
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV TVINY P+ L Y+HRVGRTARAGR G A T + DR ++KA K A
Sbjct: 568 ASRGLDIKGVDTVINYEAPQSLEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKAAVKTA 627
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR++ ++ + M +++ +L+EE+E++ L +AEM+ K EN++ H
Sbjct: 628 RSQGAKIASRVIESNDADAFAAKVYGMAEEIEEVLKEEKEDKQLAQAEMQLRKGENVMVH 687
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKADKASIE----------KGKGSGNE---VTSAQQAE 466
++EI +RPKRTWF +E +K+ A K+ +A + KGK SG + + +
Sbjct: 688 EDEIKSRPKRTWFESEADKRTAKKSGRAELNGPESILKKSIKGKMSGKDRKKLDDHESRT 747
Query: 467 DLKIKEKRKREREKN---LPRKERRKL 490
+ K+ +K + ERE P+K +RK+
Sbjct: 748 EGKVWKKGRAEREGKGALAPQKGKRKV 774
>gi|115492615|ref|XP_001210935.1| hypothetical protein ATEG_00849 [Aspergillus terreus NIH2624]
gi|121742543|sp|Q0CZN5.1|DRS1_ASPTN RecName: Full=ATP-dependent RNA helicase drs1
gi|114197795|gb|EAU39495.1| hypothetical protein ATEG_00849 [Aspergillus terreus NIH2624]
Length = 821
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 246/500 (49%), Positives = 343/500 (68%), Gaps = 21/500 (4%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E NLSRP+LR A+ ++ PTPIQ IP+AL G+DI GSA+TGSGKTAAF +P LERLL
Sbjct: 308 EFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLL 367
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+RP+++P RV IL PTRELAVQ +++ K+A +TDI C +VGG S + QE L+ PD
Sbjct: 368 FRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKRPD 427
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLF
Sbjct: 428 VIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLF 487
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ VD+LI++ L +P+RL D TL +E VR+R RE + LL LC +
Sbjct: 488 SATMTDTVDKLIRVGLNRPVRLMVDSKKNTSLTLVQEFVRLRPGREDKRLGYLLYLCKEI 547
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+T +VI+F K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR V FL+ATD
Sbjct: 548 YTGRVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVENFRDGKVAFLLATD 607
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+A+RGLDI GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++KA K
Sbjct: 608 LASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKA 667
Query: 362 A---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 418
+ G+K+ SR+V +W+K +E+++ +L+EE+ E+ L +AEM+ TK EN+I
Sbjct: 668 SKAQGAKVASRVVDPAVADQWAKKAADLEEEINEVLEEEKTEKQLAQAEMQVTKGENLIK 727
Query: 419 HKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRER 478
H+ EI +RPKRTWF +EK+K+ A K A + G +G L KEK K
Sbjct: 728 HEAEIMSRPKRTWFESEKDKRAARKLGAAQL-NGPDAG-----------LSKKEKVK--- 772
Query: 479 EKNLPRKERRKLEAAREMLE 498
L K++++L+ AR+ LE
Sbjct: 773 ---LSNKDKKRLDDARQRLE 789
>gi|430811708|emb|CCJ30841.1| unnamed protein product [Pneumocystis jirovecii]
Length = 610
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 225/436 (51%), Positives = 321/436 (73%), Gaps = 3/436 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+LNLSRP+L+A E++G+ KPT IQ+ IP+AL G+DI GSA+TGSGKTAAF +P LERLL
Sbjct: 175 QLNLSRPILKALESIGFDKPTTIQSKAIPIALLGKDIVGSAVTGSGKTAAFVIPVLERLL 234
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
YRPK+I RVLIL PTRELA+Q +++ +K+A +TDI+ C+ GGLS K+QE LR PD
Sbjct: 235 YRPKKIAVTRVLILCPTRELAIQCYNVTKKLATYTDIKTCICTGGLSLKIQEAELRKRPD 294
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR IDH+RNS + + ++++DEADR+L+ GF E++E++++CPK RQT+LF
Sbjct: 295 IVIATPGRFIDHVRNSYGFSPNSIEIIVIDEADRILDEGFQDELNEIIKICPKSRQTILF 354
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ VD+LI+LSL KP+RL DP +L +E +RIR +E + A+LL LCS
Sbjct: 355 SATMTDKVDQLIRLSLNKPVRLFVDPKNSTVKSLIQEFIRIRSHKEHLRTAILLYLCSDV 414
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F +K IIF +K AH+++I+FGL L A ELHGNL+Q QR+E+LELFR+ +FL+ATD
Sbjct: 415 FKTKTIIFFDSKSFAHKIRIIFGLLHLNARELHGNLSQEQRIESLELFRRGRTNFLLATD 474
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA---I 358
+A+RGLDI GV+ +INY P Y+HR+GRTAR G +G AVT + + DR ++K I
Sbjct: 475 LASRGLDIKGVKYIINYEAPSSFNIYLHRIGRTARGGCDGVAVTLIGEGDRRIMKMATKI 534
Query: 359 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 418
A++ G+ +++R I ++ ++ +E+ V +L+EE+EE+ L +AEME K++N+I
Sbjct: 535 AEKHGNIIRNRTFPPNLINTYNTKLQNLENAVQNVLKEEKEEKELLQAEMELQKSKNLIK 594
Query: 419 HKEEIFARPKRTWFVT 434
H++EI +R RTWF T
Sbjct: 595 HEKEIKSRLPRTWFYT 610
>gi|403282331|ref|XP_003932605.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Saimiri
boliviensis boliviensis]
Length = 765
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 224/439 (51%), Positives = 317/439 (72%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 191 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 250
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR+ PD
Sbjct: 251 YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDLKSQEAALRAAPD 310
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 311 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 370
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 371 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT 430
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 431 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 490
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK I K
Sbjct: 491 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKA 550
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + + K+ IE+ME V A+LQ E EE+ ++++E + A+ ++ K
Sbjct: 551 AKAPVKARILPQDVVLKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGK 610
Query: 421 EEIFARPKRTWFVTEKEKK 439
E + P+R+WF T++E+K
Sbjct: 611 EAVVQEPERSWFQTKEERK 629
>gi|297707298|ref|XP_002830447.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 isoform 1
[Pongo abelii]
Length = 765
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 225/439 (51%), Positives = 316/439 (71%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 191 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 250
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR+ PD
Sbjct: 251 YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPD 310
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 311 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 370
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 371 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT 430
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 431 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 490
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK I K
Sbjct: 491 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKA 550
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++ K
Sbjct: 551 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGK 610
Query: 421 EEIFARPKRTWFVTEKEKK 439
E + P+R WF T++E+K
Sbjct: 611 EAVVQEPERGWFQTKEERK 629
>gi|395829165|ref|XP_003787731.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27 [Otolemur garnettii]
Length = 795
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 226/439 (51%), Positives = 315/439 (71%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 221 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 280
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR+ PD
Sbjct: 281 YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPD 340
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++RLC RQTMLF
Sbjct: 341 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRLCSHHRQTMLF 400
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 401 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT 460
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 461 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 520
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K
Sbjct: 521 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERRMLKEIVKA 580
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++ K
Sbjct: 581 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGK 640
Query: 421 EEIFARPKRTWFVTEKEKK 439
E P+R+WF T++E+K
Sbjct: 641 EATNQEPERSWFQTKEERK 659
>gi|340518289|gb|EGR48530.1| predicted protein [Trichoderma reesei QM6a]
Length = 787
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 242/467 (51%), Positives = 327/467 (70%), Gaps = 8/467 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRP+LR +G++KPTPIQA IP+AL G+D+ G A+TGSGKTAAF LP LERLLY
Sbjct: 256 MSLSRPILRGITTVGFTKPTPIQAKTIPIALMGKDLVGGAVTGSGKTAAFVLPILERLLY 315
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK+IP RV+ILTPTRELA+Q H++ K+A TDI+ L VGGLS K QE LR PD+
Sbjct: 316 RPKKIPTTRVVILTPTRELAIQCHAVATKLAAHTDIKFTLAVGGLSLKAQEVELRLRPDV 375
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D + +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 376 IIATPGRFIDHMRNSASFSVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFS 435
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD LIK+ L KP+R+ D K TLT+E VR+R RE + L+ +C +
Sbjct: 436 ATMTSTVDRLIKVGLNKPVRVMVDSQKKTAGTLTQEFVRLRPGREEKRMGYLVHICKNLY 495
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T +VIIF K+ AHR +I+FGL AELHG++ Q QR+ ++E FR V++L+ATD+
Sbjct: 496 TERVIIFFRQKKDAHRARIIFGLLGFSCAELHGSMNQTQRIASVESFRDGKVNYLLATDL 555
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV TVINY P+ + YVHRVGRTARAGR G +VT + DR ++KA K
Sbjct: 556 ASRGLDIKGVDTVINYEAPQSVEIYVHRVGRTARAGRAGTSVTLAAEPDRKVVKAAVKAG 615
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
GSK+ SR++ + KW I+ MED++ I +EE+EER L + EM+ K EN+I H
Sbjct: 616 KAQGSKIISRVIEAKDADKWQAEIDGMEDEIEEIEREEKEERQLAQVEMQIKKGENIIQH 675
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKADKASIE-----KGKGSGNEVTS 461
+ EI +RPKRTWF T+++KK A +A + + K KGS ++++
Sbjct: 676 EAEIKSRPKRTWFETQQDKKNAKQAGREELNGPQAGKKKGSATKLSN 722
>gi|417412705|gb|JAA52724.1| Putative atp-dependent rna helicase, partial [Desmodus rotundus]
Length = 788
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 225/439 (51%), Positives = 317/439 (72%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+ + +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 214 DMNLSRPLLKAITAMNFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPILERLI 273
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+++++AQF I CL VGGL K QE ALR++PD
Sbjct: 274 YKPRQAPVTRVLVLVPTRELGIQVHSVVKQLAQFCSITTCLAVGGLDVKSQEAALRAVPD 333
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 334 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 393
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 394 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT 453
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+QAQRLEAL F+ + +D L+ATD
Sbjct: 454 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQAQRLEALRRFKDEQIDILVATD 513
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K
Sbjct: 514 VAARGLDIAGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKA 573
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V ++LQ E EER ++++E + A+ ++ K
Sbjct: 574 AKAPVKARILPQDVILKFRDKIEKMEKDVYSVLQLEAEEREMQQSEAQINTAKRLLEKGK 633
Query: 421 EEIFARPKRTWFVTEKEKK 439
E P+R+WF T++E+K
Sbjct: 634 EAQNHEPERSWFQTKEERK 652
>gi|10434683|dbj|BAB14343.1| unnamed protein product [Homo sapiens]
Length = 765
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 224/439 (51%), Positives = 316/439 (71%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 191 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 250
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR+ PD
Sbjct: 251 YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPD 310
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 311 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 370
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 371 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT 430
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 431 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 490
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + Y HRVGRTARAGR G +V+ V +++R +LK I K
Sbjct: 491 VAARGLDIEGVKTVINFTMPNTIKHYDHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKA 550
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++ K
Sbjct: 551 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGK 610
Query: 421 EEIFARPKRTWFVTEKEKK 439
E + P+R+WF T++E+K
Sbjct: 611 EAVVQEPERSWFQTKEERK 629
>gi|301621509|ref|XP_002940090.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Xenopus
(Silurana) tropicalis]
Length = 760
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 252/608 (41%), Positives = 387/608 (63%), Gaps = 41/608 (6%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E+NLSRPLL+A A+ +++PTPIQ ACIP+ L G+DIC A TG+GKTAAF LP LERL+
Sbjct: 187 EMNLSRPLLKAISAMSFTQPTPIQKACIPIGLLGKDICACAATGTGKTAAFMLPVLERLI 246
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P+ P RVL+L PTREL +QVH++ +AQFT++ CL VGGL K QE ALRS PD
Sbjct: 247 YKPREAPVTRVLVLVPTRELGIQVHAVSRLLAQFTEVTTCLAVGGLDVKTQEAALRSGPD 306
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR+IDHL N S LD + VLILDEADR+L+ F ++ E++RLC +RQT+LF
Sbjct: 307 VLIATPGRLIDHLHNCPSFSLDSIEVLILDEADRMLDEYFEEQMKEIIRLCSHQRQTLLF 366
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++E+V +L +SL P+R+ + + L +E VRIR RE ++EAV +L ++T
Sbjct: 367 SATMSEEVKDLASVSLRNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAVACALLTRT 426
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLE+L F+ + +D L+ATD
Sbjct: 427 FQDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQTQRLESLRRFKDEQIDILVATD 486
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN P + YVHRVGRTARAG+ G +V+ V + +R +LK I K+
Sbjct: 487 VAARGLDIDGVKTVINLTMPGTVKHYVHRVGRTARAGKAGRSVSLVGEEERKMLKEIVKK 546
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 421
A + +K+R++ + I+K+ + I + E ++ A+LQ E+EE+ ++ +E + + A+ + +
Sbjct: 547 AQAPVKARVIPQDVISKFREKITKSEKEIYAVLQLEKEEKEMQMSEAQISVAKKKLQPGK 606
Query: 422 EIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKR----- 476
+ P+R+WF T++E++ +++ A Q DL ++ K+KR
Sbjct: 607 GEESHPERSWFQTKEERR----------------KEKLSHALQEFDLALRGKKKRKKFMA 650
Query: 477 --EREKNLPRKERRKLEAAREMLEDEDQVDKLQGSGKDKKEKAGISMVDLAYRRAKAVKA 534
+++ L +ER + E + + E + + +D+K K RA+A+
Sbjct: 651 DTKKKGELTAEERSQFEVLKAQMYAE------RAAKRDRKPK-----------RARAIPT 693
Query: 535 KQKALDAGKIVKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHSFK 594
+++ + K K + + +N+ K +++ F + S + +KR G +K +FK
Sbjct: 694 EEEPAASNIKAKKQKKNTVFDEELTNTSRKALKK-FRAGPSFEDRKRLGINQRKKGSNFK 752
Query: 595 SKSRYKRR 602
SKSRY+R+
Sbjct: 753 SKSRYRRK 760
>gi|154316321|ref|XP_001557482.1| hypothetical protein BC1G_03746 [Botryotinia fuckeliana B05.10]
gi|160380649|sp|A6RUH2.1|DRS1_BOTFB RecName: Full=ATP-dependent RNA helicase drs1
gi|347828004|emb|CCD43701.1| hypothetical protein [Botryotinia fuckeliana]
Length = 801
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 232/444 (52%), Positives = 317/444 (71%), Gaps = 3/444 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRP+LR +G+++PTPIQ+ IP+AL G+D+ G A+TGSGKTAAF +P LERLLY
Sbjct: 273 MSLSRPILRGLATVGFTQPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFVVPVLERLLY 332
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK++P RV IL PTRELA+Q H++ K+A TDI+ CL VGGLS K+QE LR PD+
Sbjct: 333 RPKKVPTSRVAILMPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQEAELRLRPDV 392
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 393 IIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEAGFADELNEILTTIPKSRQTMLFS 452
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT++ VD LI++ L +P+RL D TL +E +R+R RE + LL LC+ +
Sbjct: 453 ATMSSSVDNLIRVGLNRPVRLLVDSQKSTAGTLVQEFIRLRPGREGKRMGYLLYLCANVY 512
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T +VI+F K+ AHR +I+FGL+ LKA ELHG+++Q QR++++E FR FL+ATD+
Sbjct: 513 TDRVIVFFRQKKEAHRARIIFGLSGLKATELHGSMSQEQRIKSVEAFRDGKASFLLATDL 572
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV TVINY P+ Y+HRVGRTARAGR G A T + DR ++KA K +
Sbjct: 573 ASRGLDIKGVDTVINYEAPQSHDIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKAS 632
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR++ WS+ +++M D++ IL+EE+E++IL +AEME K +N I H
Sbjct: 633 RTQGAKVVSRVIEASEADSWSEKVDEMADEIEEILKEEKEDKILAQAEMEVRKGQNFIDH 692
Query: 420 KEEIFARPKRTWFVTEKEKKLAVK 443
+ EI RPKRTWF TEKEK A K
Sbjct: 693 EAEIKGRPKRTWFETEKEKLAAKK 716
>gi|73992237|ref|XP_534451.2| PREDICTED: probable ATP-dependent RNA helicase DDX27 isoform 1
[Canis lupus familiaris]
Length = 765
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/441 (51%), Positives = 316/441 (71%), Gaps = 3/441 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 189 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 248
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ +++AQF +I CL VGGL K QE ALR+ PD
Sbjct: 249 YKPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAAPD 308
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 309 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 368
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E VRIR RE ++EA++ +L ++T
Sbjct: 369 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAALLTRT 428
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 429 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 488
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K
Sbjct: 489 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKA 548
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-- 419
A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ L+++E + A+ ++
Sbjct: 549 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKELQQSEAQINTAKRLLEREK 608
Query: 420 -KEEIFARPKRTWFVTEKEKK 439
KE P+R+WF T++E+K
Sbjct: 609 GKEASNHEPERSWFQTKEERK 629
>gi|400599006|gb|EJP66710.1| DEAD/DEAH box helicase [Beauveria bassiana ARSEF 2860]
Length = 768
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/438 (50%), Positives = 309/438 (70%), Gaps = 3/438 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRP+LR +G++KPTPIQA IP+AL G+D+ G A+TGSGKT AF +P LERLLY
Sbjct: 253 MSLSRPILRGLTNVGFTKPTPIQAKTIPIALMGKDLVGGAVTGSGKTGAFIIPILERLLY 312
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK++P RV++LTPTRELA+Q H++ K+A TDI+ L VGGLS K+QE LR PD+
Sbjct: 313 RPKKVPTTRVVVLTPTRELAIQCHAVATKLAAHTDIKFTLAVGGLSLKVQEAELRLRPDV 372
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D + +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 373 IIATPGRFIDHMRNSASFPIDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFS 432
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD LI++ + KP R+ D + TL +E VR+R RE + L +C +
Sbjct: 433 ATMTSTVDRLIRVGMNKPARVMVDSQKRTVGTLVQEFVRLRPGRENKRMGYLAHICKTLY 492
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T +VIIF K+ AH +I+FG+ + AELHG+++Q R+E++E FR V++L+ATD+
Sbjct: 493 TERVIIFFRQKKDAHEARIIFGILGMTCAELHGSMSQTGRIESVEAFRDGKVNYLLATDL 552
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV TVINY P+ L YVHRVGRTARAGR+G A+T ++DR ++KA K
Sbjct: 553 ASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRKGVALTLAAESDRKVVKAAVKAG 612
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR++ + K I+ M+ ++ I+QEE+EE+ AEM+ K ENMI H
Sbjct: 613 KAQGAKITSRVIENEKADKLQAQIDGMQREIKEIMQEEKEEKQFANAEMQVRKGENMIEH 672
Query: 420 KEEIFARPKRTWFVTEKE 437
+ EI +RPKRTWF TE +
Sbjct: 673 EFEIKSRPKRTWFETEHD 690
>gi|15422163|gb|AAK95821.1| RNA helicase-like protein [Homo sapiens]
Length = 796
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 224/439 (51%), Positives = 316/439 (71%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 222 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 281
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR+ PD
Sbjct: 282 YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPD 341
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 342 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 401
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 402 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT 461
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 462 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 521
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + Y HRVGRTARAGR G +V+ V +++R +LK I K
Sbjct: 522 VAARGLDIEGVKTVINFTMPNTIKHYDHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKA 581
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++ K
Sbjct: 582 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGK 641
Query: 421 EEIFARPKRTWFVTEKEKK 439
E + P+R+WF T++E+K
Sbjct: 642 EAVVQEPERSWFQTKEERK 660
>gi|122692565|ref|NP_001073740.1| probable ATP-dependent RNA helicase DDX27 [Bos taurus]
gi|142980808|sp|A1A4H6.1|DDX27_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
Full=DEAD box protein 27
gi|119223998|gb|AAI26498.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Bos taurus]
gi|296481114|tpg|DAA23229.1| TPA: probable ATP-dependent RNA helicase DDX27 [Bos taurus]
Length = 765
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 226/439 (51%), Positives = 314/439 (71%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 191 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 250
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ +++AQF I CL VGGL K QE ALR+ PD
Sbjct: 251 YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPD 310
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 311 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 370
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L +T
Sbjct: 371 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMRT 430
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 431 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 490
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K
Sbjct: 491 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKA 550
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++K+E + A+ ++ K
Sbjct: 551 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQINTAQRLLEKGK 610
Query: 421 EEIFARPKRTWFVTEKEKK 439
E P+R+WF T++E+K
Sbjct: 611 EAPNPEPERSWFQTKEERK 629
>gi|67967779|dbj|BAE00372.1| unnamed protein product [Macaca fascicularis]
Length = 764
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 224/439 (51%), Positives = 315/439 (71%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PT IQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 190 DMNLSRPLLKAITAMGFKQPTSIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 249
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR+ PD
Sbjct: 250 YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPD 309
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 310 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 369
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 370 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT 429
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 430 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 489
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK I K
Sbjct: 490 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKA 549
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++ K
Sbjct: 550 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGK 609
Query: 421 EEIFARPKRTWFVTEKEKK 439
E + P+R WF T++E+K
Sbjct: 610 EAVVQEPERNWFQTKEERK 628
>gi|156037652|ref|XP_001586553.1| hypothetical protein SS1G_12540 [Sclerotinia sclerotiorum 1980]
gi|160380650|sp|A7F4L5.1|DRS1_SCLS1 RecName: Full=ATP-dependent RNA helicase drs1
gi|154697948|gb|EDN97686.1| hypothetical protein SS1G_12540 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 801
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/444 (52%), Positives = 318/444 (71%), Gaps = 3/444 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRP+LR +G+++PTPIQ+ IP+AL G+D+ G A+TGSGKTAAF +P LERLLY
Sbjct: 273 MSLSRPILRGLATVGFTQPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFIVPVLERLLY 332
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK++P RV IL PTRELA+Q H++ K+A TDI+ CL VGGLS K+QE LR PD+
Sbjct: 333 RPKKVPTSRVAILMPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQEAELRLRPDV 392
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 393 IIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEAGFADELNEILTTIPKSRQTMLFS 452
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT++ VD LI++ L +P+RL D TLT+E +R+R RE + LL LC+ +
Sbjct: 453 ATMSSSVDNLIRVGLNRPVRLLVDSQKSTAGTLTQEFIRLRPGREGKRMGYLLYLCANVY 512
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T +VI+F K+ AHR +I+FGL+ LKA ELHG+++Q QR++++E FR FL+ATD+
Sbjct: 513 TDRVIVFFRQKKEAHRARIIFGLSGLKATELHGSMSQEQRIKSVEAFRDGKASFLLATDL 572
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV TVINY P+ Y+HRVGRTARAGR G A T + DR ++KA K +
Sbjct: 573 ASRGLDIKGVDTVINYEAPQSHDIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKAS 632
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR++ WS+ +++M D++ IL+EE+E++IL +AEME K +N + H
Sbjct: 633 RTQGAKVVSRVIEASEADSWSEKVDEMADEIEEILKEEKEDKILAQAEMEVRKGQNFMDH 692
Query: 420 KEEIFARPKRTWFVTEKEKKLAVK 443
+ EI RPKRTWF +EKEK A K
Sbjct: 693 EAEIKGRPKRTWFESEKEKLAAKK 716
>gi|426241599|ref|XP_004014677.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Ovis aries]
Length = 765
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 226/439 (51%), Positives = 314/439 (71%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 191 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 250
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ +++AQF I CL VGGL K QE ALR+ PD
Sbjct: 251 YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPD 310
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 311 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 370
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L +T
Sbjct: 371 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMRT 430
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 431 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 490
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K
Sbjct: 491 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKA 550
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++K+E + A+ ++ K
Sbjct: 551 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQINTAQRLLEKGK 610
Query: 421 EEIFARPKRTWFVTEKEKK 439
E P+R+WF T++E+K
Sbjct: 611 EAPNPEPERSWFQTKEERK 629
>gi|281351106|gb|EFB26690.1| hypothetical protein PANDA_000812 [Ailuropoda melanoleuca]
Length = 703
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 225/439 (51%), Positives = 315/439 (71%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A +G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 159 DMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 218
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ +++AQF +I CL VGGL K QE ALR+ PD
Sbjct: 219 YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAAPD 278
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 279 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 338
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 339 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT 398
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 399 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 458
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K
Sbjct: 459 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKA 518
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ L+++E + A+ ++ K
Sbjct: 519 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKELQQSEAQINTAKRLLEKGK 578
Query: 421 EEIFARPKRTWFVTEKEKK 439
E P+R+WF T++E+K
Sbjct: 579 EASNHEPERSWFQTKEERK 597
>gi|440902879|gb|ELR53614.1| Putative ATP-dependent RNA helicase DDX27, partial [Bos grunniens
mutus]
Length = 741
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 226/439 (51%), Positives = 314/439 (71%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 161 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 220
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ +++AQF I CL VGGL K QE ALR+ PD
Sbjct: 221 YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPD 280
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 281 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 340
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L +T
Sbjct: 341 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMRT 400
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 401 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 460
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K
Sbjct: 461 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKA 520
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++K+E + A+ ++ K
Sbjct: 521 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQINTAQRLLEKGK 580
Query: 421 EEIFARPKRTWFVTEKEKK 439
E P+R+WF T++E+K
Sbjct: 581 EAPNPEPERSWFQTKEERK 599
>gi|119596074|gb|EAW75668.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, isoform CRA_d [Homo
sapiens]
Length = 763
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/434 (51%), Positives = 312/434 (71%), Gaps = 1/434 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 222 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 281
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR+ PD
Sbjct: 282 YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPD 341
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 342 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 401
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 402 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT 461
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 462 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 521
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK I K
Sbjct: 522 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKA 581
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++ K
Sbjct: 582 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGK 641
Query: 421 EEIFARPKRTWFVT 434
E + P+R+WF T
Sbjct: 642 EAVVQEPERSWFQT 655
>gi|301754403|ref|XP_002913034.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
[Ailuropoda melanoleuca]
Length = 764
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 225/439 (51%), Positives = 315/439 (71%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A +G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 190 DMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 249
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ +++AQF +I CL VGGL K QE ALR+ PD
Sbjct: 250 YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAAPD 309
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 310 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 369
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 370 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT 429
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 430 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 489
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K
Sbjct: 490 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKA 549
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ L+++E + A+ ++ K
Sbjct: 550 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKELQQSEAQINTAKRLLEKGK 609
Query: 421 EEIFARPKRTWFVTEKEKK 439
E P+R+WF T++E+K
Sbjct: 610 EASNHEPERSWFQTKEERK 628
>gi|194224511|ref|XP_001501169.2| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Equus
caballus]
Length = 724
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 225/439 (51%), Positives = 315/439 (71%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 240 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 299
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ +++AQF I CL VGGL K QE ALR+ PD
Sbjct: 300 YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPD 359
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 360 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 419
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 420 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT 479
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 480 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 539
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K
Sbjct: 540 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKT 599
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++ K
Sbjct: 600 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGK 659
Query: 421 EEIFARPKRTWFVTEKEKK 439
E P+R+WF T++E+K
Sbjct: 660 EGPNHEPERSWFQTKEERK 678
>gi|355683275|gb|AER97071.1| DEAD box polypeptide 27 [Mustela putorius furo]
Length = 712
Score = 473 bits (1218), Expect = e-130, Method: Compositional matrix adjust.
Identities = 226/439 (51%), Positives = 314/439 (71%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A +G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 190 DMNLSRPLLKAITTMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 249
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVLIL PTREL +QVHS+ +++AQF I CL VGGL K QE ALR+ PD
Sbjct: 250 YKPRQAPVTRVLILVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPD 309
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 310 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 369
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 370 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT 429
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 430 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 489
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K
Sbjct: 490 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKA 549
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ L+++E + A+ ++ K
Sbjct: 550 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKELQQSEAQINTAKRLLEKGK 609
Query: 421 EEIFARPKRTWFVTEKEKK 439
E P+R+WF T++E+K
Sbjct: 610 EAPNHEPERSWFQTKEERK 628
>gi|401885525|gb|EJT49639.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
2479]
gi|406694842|gb|EKC98161.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
8904]
Length = 804
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 232/435 (53%), Positives = 319/435 (73%), Gaps = 7/435 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+NLSRPLLRA +LG++ PTPIQ+ +PLAL GRDI GSA+TGSGKTAAF +P LERL Y
Sbjct: 213 MNLSRPLLRALSSLGFNAPTPIQSRAVPLALLGRDILGSAVTGSGKTAAFMIPILERLQY 272
Query: 63 RP--KRIPAIRVLILTPTRELAVQVHSMIEKIAQ--FTDIRCCLVVGGLSTKMQETALRS 118
R K A RVL+L PTRELAVQ + + +A+ D+R L+VGGLS Q ALR+
Sbjct: 273 RDRGKGGAACRVLVLCPTRELAVQCEQVGKALAERGGLDVRFALLVGGLSLNAQAHALRT 332
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
+PDI++ATPGR+IDHL N+ S L L +L++DEADR+LE GF+ E+ E+VR CP+ RQT
Sbjct: 333 LPDILIATPGRLIDHLTNTPSFTLGALDILVIDEADRMLEAGFTDELEEIVRQCPRGRQT 392
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
MLFSAT+T+ VDEL+KLSL +P+R+ D + LT+E VR+R E + LL+LC
Sbjct: 393 MLFSATMTDSVDELVKLSLDRPVRVFVDKERNTAAGLTQEFVRVRS--EETRSPALLTLC 450
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+T K IIF +K AH+++++FGL L AAELHGNLTQ QRL AL F+ VD+L+
Sbjct: 451 KRTVHEKAIIFFRSKALAHQMRVVFGLCGLVAAELHGNLTQEQRLVALNDFKAGRVDYLL 510
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+A+RGLDI GV+TVINY P L YVHRVGRTARAGR+G +++ V + DR +LKA+
Sbjct: 511 ATDLASRGLDIKGVETVINYDMPGQLAQYVHRVGRTARAGRKGRSISLVGEPDRKMLKAV 570
Query: 359 AKRAG-SKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 417
KR+ +++ RI+ +++ S +++++++++A+L EEREE++LR+A+ME K +NM+
Sbjct: 571 MKRSDKDQIRHRIIPPEAVQAMSAKLDELKEEISAVLAEEREEKLLRQADMELRKGQNMV 630
Query: 418 AHKEEIFARPKRTWF 432
H+ EI++RP RTWF
Sbjct: 631 EHEAEIYSRPARTWF 645
>gi|346978687|gb|EGY22139.1| ATP-dependent RNA helicase DRS1 [Verticillium dahliae VdLs.17]
Length = 748
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 238/475 (50%), Positives = 328/475 (69%), Gaps = 3/475 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRP+LR + ++KPTPIQ IP+AL G+D+ G A+TGSGKTAAF +P LERLLY
Sbjct: 224 MSLSRPILRGLAGVSFTKPTPIQQKTIPIALMGKDLVGGAVTGSGKTAAFVVPILERLLY 283
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK++P RV+ILTPTRELA+Q HS+ K+A +TDI+ L VGGLS KMQE LR PD+
Sbjct: 284 RPKKVPTSRVVILTPTRELAIQCHSVATKLAAYTDIKFTLAVGGLSLKMQEAELRLRPDV 343
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D + +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 344 IIATPGRFIDHMRNSASFAVDAVEILVLDEADRMLEDGFADELNEILTSMPKSRQTMLFS 403
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD LI++ + P R+ D K +TLT+E +R+R RE + LL +C +
Sbjct: 404 ATMTSSVDRLIRVGMNTPARVMVDSQKKTVTTLTQEFIRLRPGRESKRMGYLLFICKTLY 463
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T +VIIF K+ AHR +I+FGL L AELHG++ Q QR++++E FR V +L+ATD+
Sbjct: 464 TERVIIFFRQKKDAHRARIIFGLLGLSCAELHGSMNQTQRIQSVEDFRDGKVSYLLATDL 523
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI G+ TVINY P+ L YVHRVGRTARAGR G AVT + DR ++KA K
Sbjct: 524 ASRGLDIKGIDTVINYEAPQKLEIYVHRVGRTARAGRAGVAVTLAAEPDRKVVKAAVKAG 583
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR++ KW +++ME+++ I +EE+EER L + EM+ K EN+I H
Sbjct: 584 KAQGAKILSRVIEAGEADKWQDKVDEMEEEIEEINEEEKEERQLAQVEMQVRKGENLINH 643
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKR 474
++EI +RP+RTWF +EK+KK A +A +A + K + +D K E R
Sbjct: 644 EDEIKSRPRRTWFESEKDKKSAKEAGRAELNGDKNEKKKGGGKMSNKDKKKAESR 698
>gi|148235819|ref|NP_001089455.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Xenopus laevis]
gi|66910710|gb|AAH97561.1| MGC114699 protein [Xenopus laevis]
Length = 758
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 253/610 (41%), Positives = 385/610 (63%), Gaps = 45/610 (7%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+ +++PTPIQ ACIP+ L G+DIC A TG+GKTAAF LP LERL+
Sbjct: 185 DMNLSRPLLKAISAMSFTQPTPIQKACIPVGLLGKDICACAATGTGKTAAFMLPVLERLI 244
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P+ P RVL+L PTREL +QVH++ ++AQFT++ CL VGGL K QE ALRS PD
Sbjct: 245 YKPREAPVTRVLVLVPTRELGIQVHAVTRQLAQFTEVTTCLAVGGLDVKTQEAALRSGPD 304
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR+IDHL N S L+ + VLILDEADR+L+ F ++ E++RLC +RQT+LF
Sbjct: 305 VLIATPGRLIDHLHNCPSFSLNCIEVLILDEADRMLDEYFEEQMKEIIRLCSHQRQTLLF 364
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++E+V +L +SL P+R+ + + L +E VRIR RE ++EAV +L ++T
Sbjct: 365 SATMSEEVKDLASVSLRNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAVACALLTRT 424
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 425 FQDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 484
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN P + YVHRVGRTARAG+ G +V+ V + +R +LK I K+
Sbjct: 485 VAARGLDIDGVKTVINLTMPGTVKHYVHRVGRTARAGKAGRSVSLVGEEERKMLKEIVKK 544
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 421
A + +K+R++ + I+K+ I + E ++ A++Q E+EER ++ +E + + A+ + ++
Sbjct: 545 AQAPVKARVIPQDVISKFRDKITKSEKEIYAVMQLEKEEREMQMSEAQISVAKKKLQQEK 604
Query: 422 EIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKR----- 476
A+P+R+WF T E++ +++ A Q DL ++ K+KR
Sbjct: 605 GGEAQPERSWFQTRDERR----------------KEKLSHALQEFDLAMRGKKKRKKFLS 648
Query: 477 --EREKNLPRKERRKLEAAREMLEDEDQVDKLQGSGKDKKEKAGISMVDLAYRRAKAVKA 534
+++ L +ER + E + + E + + +D+K K +M A +KA
Sbjct: 649 DSKKKGELTSEERSQFEVLKAQMYAE------RAAKRDRKPKRARAMPPEEEPGASNIKA 702
Query: 535 KQKALDAGKIVKSNGKKSKHS--SQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHS 592
K K+ KH+ +E + +++ + + + S + +KR G +K
Sbjct: 703 K--------------KQKKHTVFDEELTNTSRKALKKYRAGPSFEDRKRLGINQRKKGAG 748
Query: 593 FKSKSRYKRR 602
FKSKSRY+R+
Sbjct: 749 FKSKSRYRRK 758
>gi|325091017|gb|EGC44327.1| ATP-dependent RNA helicase drs1 [Ajellomyces capsulatus H88]
Length = 828
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/455 (50%), Positives = 324/455 (71%), Gaps = 6/455 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+LSRP+LR ++G++ PTPIQ IP+AL G+D+ G A+TGSGKT AF +P LERLLY
Sbjct: 309 FSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILERLLY 368
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RP+++P RV+IL PTRELAVQ +++ K+A FTDI C +VGG S + QE L+ PD+
Sbjct: 369 RPRKVPTSRVVILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDV 428
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 429 IIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFS 488
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T +VD+LI++ L +P+RL D + TL +E VR+R RE + L+ LC +
Sbjct: 489 ATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLIQEFVRLRPGREEKRLGYLIVLCKNIY 548
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+VI+F +K+ AHR++I+FGL LK ELHG+++Q QR++++E FR V FL+ATDV
Sbjct: 549 KDRVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQEQRIKSVESFRDGKVSFLLATDV 608
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++KA K
Sbjct: 609 ASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKAAVKTG 668
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR++ KW+ +E+M+++V IL+EE+EE+ L +AEME T+ N++ H
Sbjct: 669 RAQGAKIVSRLIETAEADKWAAKVEEMQEEVQEILREEKEEKQLAQAEMEVTRGSNLLNH 728
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKG 454
+EI +RPKRTWF +EKEK ++A + S+E+ G
Sbjct: 729 DKEIMSRPKRTWFESEKEK---LQAKQRSLEELNG 760
>gi|443720455|gb|ELU10207.1| hypothetical protein CAPTEDRAFT_141736, partial [Capitella teleta]
Length = 616
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 221/437 (50%), Positives = 316/437 (72%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A +G+++PTPIQ A IP+AL G+DIC A TG+GKTAAF LP LERLL
Sbjct: 38 DMNLSRPLLKAIANMGFTQPTPIQGATIPVALLGKDICACAATGTGKTAAFLLPVLERLL 97
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
YRP++ P RVL+LTPTRELAVQ+H++ ++ QFT+I L GG+ K QE ALR PD
Sbjct: 98 YRPRQAPVTRVLVLTPTRELAVQIHTVARQLTQFTNIETSLSAGGMDVKAQEAALRLGPD 157
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR+IDHL N+ + +L+ + VLILDEADR+L+ F+ ++ E++ LC RQTMLF
Sbjct: 158 IVIATPGRLIDHLHNAPNFNLNSVEVLILDEADRMLDEYFAEQMKEVISLCATVRQTMLF 217
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+TE+V +L +SL P+++ + + + L +E +RIR RE ++EAV+ +L +T
Sbjct: 218 SATMTEEVKDLAAVSLNSPVKIFVNENTQVALNLRQEFIRIRPNREGDREAVVGALLKRT 277
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F +V++F TK+ AHRL I+ GL ++ ELHGNL+Q QRLE+L+ F+ VD L+ATD
Sbjct: 278 FHDQVMVFVQTKKQAHRLHIILGLLGIRVGELHGNLSQQQRLESLKRFKDGDVDVLLATD 337
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARGLDI GV+TVIN+ P Y+HRVGRTARAG+ G A+T + +R +LK + K+
Sbjct: 338 LAARGLDIDGVRTVINFTMPSTCAHYIHRVGRTARAGKSGRAITLAGEQERKVLKEVVKK 397
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 421
A +KSR+V + +T++ + I+ +E ++ AI ++E EE+ +R E++ KA+ MI H+E
Sbjct: 398 ATLPVKSRVVPQDVVTRFREKIDSLESEITAIERQEVEEKEMRITELKVNKAQKMIEHQE 457
Query: 422 EIFARPKRTWFVTEKEK 438
EI +RPKR WF T E+
Sbjct: 458 EIMSRPKRGWFQTHNER 474
>gi|300121162|emb|CBK21543.2| unnamed protein product [Blastocystis hominis]
Length = 627
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 252/451 (55%), Positives = 333/451 (73%), Gaps = 8/451 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L LSRPLLRA +G++ PTPIQA CIPLAL G+DIC +A TGSGKTAA+ LP LERLL
Sbjct: 174 QLRLSRPLLRAVNEMGFTTPTPIQARCIPLALAGKDICAAAKTGSGKTAAYLLPILERLL 233
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+ IRVLI+ PTRELA QVH++ K+ ++T I CCLVVGGL + Q L+ PD
Sbjct: 234 YKNNAQNLIRVLIVAPTRELAQQVHTIATKLTKYTSITCCLVVGGLPLQAQAVDLQRRPD 293
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IVV TPGRMIDH+ NSMSVDLDD+ V+ILDEADRLLELGF+ E+HEL+RLCP +RQT+LF
Sbjct: 294 IVVCTPGRMIDHVHNSMSVDLDDVEVVILDEADRLLELGFTEELHELLRLCPVKRQTLLF 353
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN-QEAVLLSLCSK 240
SAT+T+DV +LI LSL KP+R+ DP + + + +V+ R+++ + + A+LLS+ ++
Sbjct: 354 SATMTDDVSDLISLSLQKPVRVFVDPV----NQVVDRLVQFIRVKDESLRTAMLLSIITR 409
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
F ++ IIF+ K AH L I+ GL LK+AELHGNL Q QRL AL+ F K+ VDFLIAT
Sbjct: 410 HFKTETIIFAERKAEAHLLHIILGLLGLKSAELHGNLNQTQRLRALDRFSKKEVDFLIAT 469
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI GVQTVIN P++ +Y+HRVGRTARAG G AVTFV ++ R L+K + K
Sbjct: 470 DVAARGLDIKGVQTVINLHMPKEEATYIHRVGRTARAGHAGRAVTFVEEDRRLLMKKLVK 529
Query: 361 R---AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 417
+ A ++K+R V ++S+ K++ +E ++ ++ IL+EE+ E+ + +A MEAT+A+N+I
Sbjct: 530 QAVEAKQQIKTRSVNKESVAKFAAQLEDLKKEIDEILEEEKVEKEIERATMEATRADNLI 589
Query: 418 AHKEEIFARPKRTWFVTEKEKKLAVKADKAS 448
H EI AR KRTWF +EKEKK D AS
Sbjct: 590 KHGNEIKARKKRTWFQSEKEKKTTRMKDLAS 620
>gi|240274680|gb|EER38196.1| ATP-dependent RNA helicase drs1 [Ajellomyces capsulatus H143]
Length = 828
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/455 (50%), Positives = 323/455 (70%), Gaps = 6/455 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+LSRP+LR +G++ PTPIQ IP+AL G+D+ G A+TGSGKT AF +P LERLLY
Sbjct: 309 FSLSRPILRGLTFVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILERLLY 368
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RP+++P RV+IL PTRELAVQ +++ K+A FTDI C +VGG S + QE L+ PD+
Sbjct: 369 RPRKVPTSRVVILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDV 428
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 429 IIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFS 488
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T +VD+LI++ L +P+RL D + TL +E VR+R RE + L+ LC +
Sbjct: 489 ATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLIQEFVRLRPGREEKRLGYLIVLCKNIY 548
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+VI+F +K+ AHR++I+FGL LK ELHG+++Q QR++++E FR V FL+ATDV
Sbjct: 549 KDRVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQEQRIKSVEGFRDGKVSFLLATDV 608
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++KA K
Sbjct: 609 ASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKAAVKTG 668
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR++ KW+ +E+M+++V IL+EE+EE+ L +AEME T+ N++ H
Sbjct: 669 RAQGAKIVSRLIETAEADKWAAKVEEMQEEVQEILREEKEEKQLAQAEMEVTRGSNLLNH 728
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKG 454
+EI +RPKRTWF +EKEK ++A + S+E+ G
Sbjct: 729 DKEIMSRPKRTWFESEKEK---LQAKQRSLEELNG 760
>gi|225561576|gb|EEH09856.1| ATP-dependent RNA helicase DRS1 [Ajellomyces capsulatus G186AR]
Length = 829
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/455 (50%), Positives = 324/455 (71%), Gaps = 6/455 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+LSRP+LR ++G++ PTPIQ IP+AL G+D+ G A+TGSGKT AF +P LERLLY
Sbjct: 310 FSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILERLLY 369
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RP+++P RV IL PTRELAVQ +++ K+A FTDI C +VGG S + QE L+ PD+
Sbjct: 370 RPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDV 429
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 430 IIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFTDELNEILTTIPKSRQTMLFS 489
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T +VD+LI++ L +P+RL D + TL +E VR+R RE + L+ LC +
Sbjct: 490 ATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLIQEFVRLRPGREEKRLGYLIVLCKNIY 549
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+VI+F +K+ AHR++I+FGL LK ELHG+++Q QR++++E FR V FL+ATDV
Sbjct: 550 KDRVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQEQRIKSVESFRDGKVSFLLATDV 609
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++KA K
Sbjct: 610 ASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKAAVKTG 669
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR++ KW+ +E+M+++V IL+EE+EE+ L +AEME T+ N++ H
Sbjct: 670 RAQGAKIVSRLIETAEADKWAAKVEEMQEEVQEILREEKEEKQLAQAEMEVTRGSNLLNH 729
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKG 454
++EI +RPKRTWF +EKEK ++A + S+E+ G
Sbjct: 730 EKEIMSRPKRTWFESEKEK---LQAKQRSLEELNG 761
>gi|261189897|ref|XP_002621359.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis SLH14081]
gi|239591595|gb|EEQ74176.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis SLH14081]
Length = 834
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 234/455 (51%), Positives = 324/455 (71%), Gaps = 6/455 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+LSRP+LR ++G++ PTPIQ IP+AL G+D+ G A+TGSGKT AF +P LERLLY
Sbjct: 316 FSLSRPILRGLTSVGFTTPTPIQQKTIPVALLGKDVVGGAVTGSGKTGAFIIPILERLLY 375
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RP+++P RV IL PTRELAVQ +++ K+A FTDI C +VGG S + QE L+ PD+
Sbjct: 376 RPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDV 435
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 436 IIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFS 495
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T +VD+LI++ L +P+RL D + TL +E VR+R RE + L+ LC +
Sbjct: 496 ATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLVQEFVRLRPGREDKRLGYLMVLCKTIY 555
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+VIIF K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR V FL+ATDV
Sbjct: 556 KDRVIIFFRAKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVESFRDGKVSFLLATDV 615
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++KA K
Sbjct: 616 ASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKAAVKTG 675
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR + KW+ +E+M+++V IL+EE+EE+ L +AEME T+ N+I H
Sbjct: 676 RAQGAKIVSRPIDSAEADKWAAKVEEMQEEVKEILKEEKEEKQLAQAEMEVTRGSNLINH 735
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKG 454
++EI +RPKRTWF TEKEK ++A + S+E+ G
Sbjct: 736 EKEIMSRPKRTWFETEKEK---LQAKQRSLEELNG 767
>gi|327352045|gb|EGE80902.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis ATCC 18188]
Length = 834
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 234/455 (51%), Positives = 324/455 (71%), Gaps = 6/455 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+LSRP+LR ++G++ PTPIQ IP+AL G+D+ G A+TGSGKT AF +P LERLLY
Sbjct: 316 FSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILERLLY 375
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RP+++P RV IL PTRELAVQ +++ K+A FTDI C +VGG S + QE L+ PD+
Sbjct: 376 RPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDV 435
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 436 IIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFS 495
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T +VD+LI++ L +P+RL D + TL +E VR+R RE + L+ LC +
Sbjct: 496 ATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLVQEFVRLRPGREDKRLGYLMVLCKTIY 555
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+VIIF K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR V FL+ATDV
Sbjct: 556 KDRVIIFFRAKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVESFRDGKVSFLLATDV 615
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++KA K
Sbjct: 616 ASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKAAVKTG 675
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR + KW+ +E+M+++V IL+EE+EE+ L +AEME T+ N+I H
Sbjct: 676 RAQGAKIVSRPIDSAEADKWAAKVEEMQEEVKEILKEEKEEKQLAQAEMEVTRGSNLINH 735
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKG 454
++EI +RPKRTWF TEKEK ++A + S+E+ G
Sbjct: 736 EKEIMSRPKRTWFETEKEK---LQAKQRSLEELNG 767
>gi|239612877|gb|EEQ89864.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis ER-3]
Length = 834
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 234/455 (51%), Positives = 324/455 (71%), Gaps = 6/455 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+LSRP+LR ++G++ PTPIQ IP+AL G+D+ G A+TGSGKT AF +P LERLLY
Sbjct: 316 FSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILERLLY 375
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RP+++P RV IL PTRELAVQ +++ K+A FTDI C +VGG S + QE L+ PD+
Sbjct: 376 RPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDV 435
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 436 IIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFS 495
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T +VD+LI++ L +P+RL D + TL +E VR+R RE + L+ LC +
Sbjct: 496 ATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLVQEFVRLRPGREDKRLGYLMVLCKTIY 555
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+VIIF K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR V FL+ATDV
Sbjct: 556 KDRVIIFFRAKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVESFRDGKVSFLLATDV 615
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++KA K
Sbjct: 616 ASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKAAVKTG 675
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR + KW+ +E+M+++V IL+EE+EE+ L +AEME T+ N+I H
Sbjct: 676 RAQGAKIVSRPIDSAEADKWAAKVEEMQEEVKEILKEEKEEKQLAQAEMEVTRGSNLINH 735
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKG 454
++EI +RPKRTWF TEKEK ++A + S+E+ G
Sbjct: 736 EKEIMSRPKRTWFETEKEK---LQAKQRSLEELNG 767
>gi|426392064|ref|XP_004062380.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Gorilla
gorilla gorilla]
Length = 575
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 224/439 (51%), Positives = 316/439 (71%), Gaps = 2/439 (0%)
Query: 3 LNLSRPLLR-ACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+NLSRPLL+ A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 1 MNLSRPLLKVAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 60
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR+ PD
Sbjct: 61 YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPD 120
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 121 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 180
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 181 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT 240
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 241 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 300
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAG+ G +V+ V +++R +LK I K
Sbjct: 301 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGKAGRSVSLVGEDERKMLKEIVKA 360
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++ K
Sbjct: 361 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGK 420
Query: 421 EEIFARPKRTWFVTEKEKK 439
E + P+R+WF T++E+K
Sbjct: 421 EAVVQEPERSWFQTKEERK 439
>gi|58266632|ref|XP_570472.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110998|ref|XP_775963.1| hypothetical protein CNBD3700 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818015|sp|P0CQ93.1|DRS1_CRYNB RecName: Full=ATP-dependent RNA helicase DRS1
gi|338818016|sp|P0CQ92.1|DRS1_CRYNJ RecName: Full=ATP-dependent RNA helicase DRS1
gi|50258629|gb|EAL21316.1| hypothetical protein CNBD3700 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226705|gb|AAW43165.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 808
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 256/494 (51%), Positives = 348/494 (70%), Gaps = 15/494 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+NLSRPLLRA +L ++ PTPIQA IPLAL GRDI GSA+TGSGKTAAF +P LERL Y
Sbjct: 227 MNLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPILERLCY 286
Query: 63 RP--KRIPAIRVLILTPTRELAVQVHSMIEKIAQ--FTDIRCCLVVGGLSTKMQETALRS 118
R K A RVL+L PTRELAVQ ++ + +A+ D+R L+VGGLS Q LR+
Sbjct: 287 RDRGKGGAACRVLVLCPTRELAVQCEAVGKALAEKGGLDVRFALLVGGLSLNAQAHTLRT 346
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
+PDI++ATPGR+IDHL N+ S L L VL++DEADR+LE GF+ E+ E+++ CP+ RQT
Sbjct: 347 LPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEADRMLEAGFTDELEEIIKACPRSRQT 406
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
MLFSAT+T+ VDEL+KLSL KP+R+ DP LT+E VRIR + ++ LL+LC
Sbjct: 407 MLFSATMTDSVDELVKLSLDKPIRVFVDPKRNTARGLTQEFVRIRS--DDSRSPSLLALC 464
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+T K IIF +K AH+++I+FGL LKAAELHGNLTQ QRL+AL F+ VD+L+
Sbjct: 465 KRTIREKCIIFFRSKALAHQMRIVFGLFGLKAAELHGNLTQEQRLQALNDFKAGTVDYLL 524
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+A+RGLDI GV+TVINY P L Y HRVGRTARAGR+G +V+ V + DR +LKA
Sbjct: 525 ATDLASRGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSVSLVGEADRKMLKAA 584
Query: 359 AKRA-GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 417
K+A +++ RI+ +++T + +E+ +D + IL+EE+EE++LR+A+ME K +NM+
Sbjct: 585 IKQAEADQVRHRIIPSEAVTAMKEKLEEFKDDIQEILKEEKEEKLLRQADMEIKKGQNMV 644
Query: 418 AHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRE 477
H+ EIF+RP RTWF + KEK+ + A K + G+ ++ + AE K KEK KR
Sbjct: 645 EHEAEIFSRPARTWFQSGKEKQASKSAGKDAY-----VGSFPSTGKSAE--KEKEKLKRG 697
Query: 478 REKNLPRK-ERRKL 490
+ L R+ +RRK+
Sbjct: 698 KYDGLSRRLKRRKM 711
>gi|302917131|ref|XP_003052376.1| hypothetical protein NECHADRAFT_1180 [Nectria haematococca mpVI
77-13-4]
gi|256733315|gb|EEU46663.1| hypothetical protein NECHADRAFT_1180 [Nectria haematococca mpVI
77-13-4]
Length = 768
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 227/440 (51%), Positives = 311/440 (70%), Gaps = 3/440 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRP+LR ++G++KPTPIQ+ IP+AL G+D+ G A+TGSGKT AF +P LERLLY
Sbjct: 260 MSLSRPILRGLASVGFTKPTPIQSKSIPIALMGKDLVGGAVTGSGKTGAFIVPILERLLY 319
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK+IP RV++LTPTRELA+Q H++ K+A +TDI+ L VGGLS K+QE LR PD+
Sbjct: 320 RPKKIPTTRVVVLTPTRELAIQCHAVATKLAAYTDIKFTLAVGGLSLKVQEAELRLRPDV 379
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S ++D + +LILDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 380 IIATPGRFIDHMRNSASFNVDTVEILILDEADRMLEDGFADELNEILTTLPKSRQTMLFS 439
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD LI++ + KP R+ D K TL +E VR+R RE + L +C +
Sbjct: 440 ATMTSTVDRLIRVGMNKPARVMVDSQKKTVGTLVQEFVRLRPGREEKRMGYLAYICKTLY 499
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+VIIF K+ AHR +I+FGL L AELHG++ Q QR+ ++E FR V +L+ATD+
Sbjct: 500 RERVIIFFRQKKEAHRARIIFGLLGLSCAELHGSMNQTQRISSVEEFRDGKVSYLLATDL 559
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV TVINY P+ L YVHRVGRTARAGR+G A+T + DR ++KA K A
Sbjct: 560 ASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRKGTAITLAAEPDRKVVKAAVKAA 619
Query: 363 GSKLK---SRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
++ SR + K+ I++M+D++ I+QEE+EE+ L EM+ K EN+I H
Sbjct: 620 KAQGAKVVSRAIDASEADKFQNEIDEMDDEIDEIMQEEKEEKHLAHVEMQVRKGENLIEH 679
Query: 420 KEEIFARPKRTWFVTEKEKK 439
+ +I +RPKRTWF TE +KK
Sbjct: 680 EADIKSRPKRTWFETEHDKK 699
>gi|307214987|gb|EFN89832.1| Probable ATP-dependent RNA helicase DDX27 [Harpegnathos saltator]
Length = 734
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 241/496 (48%), Positives = 344/496 (69%), Gaps = 10/496 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A + + PTPIQAA IP+AL GRDICG A TG+GKTAA+ LPTLERL+
Sbjct: 159 QMNLSRPLLKAITTMNFLTPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLPTLERLM 218
Query: 62 YRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
Y+P PA+ RVL+L PTREL VQV+ + ++++QFT + L VGGL K+QE+ LR P
Sbjct: 219 YKPLDGPAVTRVLVLVPTRELGVQVYQVTKQLSQFTSVETGLSVGGLDVKVQESILRRNP 278
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ATPGR+IDHLRN+ + LD + VLILDEADR+L+ F+ ++ +V C + RQTML
Sbjct: 279 DIVIATPGRLIDHLRNTPTFSLDIIEVLILDEADRMLDEYFAEQMKYIVNQCSRSRQTML 338
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE+V +L +SL KP+++ D + L +E +RIR+ RE ++EA+L +L +
Sbjct: 339 FSATMTEEVKDLAAVSLDKPIKIFVDSNQDVAFNLRQEFIRIRKEREGDREAILAALICR 398
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF V++F TK+ AHRL IL GL +K ELHGNLTQ QRLE L+ F+ + ++ LIAT
Sbjct: 399 TFHDHVMVFVQTKKQAHRLHILLGLLGVKVGELHGNLTQPQRLENLQEFKDEIINILIAT 458
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI GV+TVIN+ P L Y+HRVGRTARAGR G +V+ + +RSL+K + K
Sbjct: 459 DVAARGLDISGVKTVINFVMPATLQHYIHRVGRTARAGRVGVSVSLAGEQERSLVKEVIK 518
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
RA + +K+RI+ I K++K ++ +E V ILQEE+ ER L K E +A +AEN++
Sbjct: 519 RAKNPVKNRIIPPDIIEKYNKKLQSLEIDVEKILQEEKSERELAKIENQANRAENLLKDV 578
Query: 421 EEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREK 480
EE R R+WF ++KE+++ +K ++ + N+ ++ E + I E +K+ + +
Sbjct: 579 EE---RNHRSWFQSKKERRM----EKENLRLTERPTNK-KKDREKEPINIVEDKKK-KAQ 629
Query: 481 NLPRKERRKLEAAREM 496
N P+K+ + A RE+
Sbjct: 630 NEPKKDTAEDRAKREL 645
>gi|345328224|ref|XP_001507068.2| PREDICTED: probable ATP-dependent RNA helicase DDX27
[Ornithorhynchus anatinus]
Length = 716
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/439 (50%), Positives = 315/439 (71%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ + G+DIC A TG+GKTAAFALP LERL+
Sbjct: 142 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGMLGKDICACAATGTGKTAAFALPVLERLI 201
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ +++AQF+++ CL VGGL K QE ALR+ PD
Sbjct: 202 YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFSNVTTCLAVGGLDVKTQEAALRAGPD 261
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++++C RQTMLF
Sbjct: 262 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIKMCSHHRQTMLF 321
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E VRIR RE ++EAV+ +L ++T
Sbjct: 322 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAVVSALLTRT 381
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 382 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDVLVATD 441
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K
Sbjct: 442 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKT 501
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE++E V A+L+ E EE+ ++ +E + A+ ++ K
Sbjct: 502 AKAPVKARILPQDVILKFRDKIEKLEKDVYAVLRLEAEEKEMQHSEAQINTAKRLLEKGK 561
Query: 421 EEIFARPKRTWFVTEKEKK 439
E P+R+WF + +E+K
Sbjct: 562 GEANEEPRRSWFQSREERK 580
>gi|344279740|ref|XP_003411645.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27-like [Loxodonta africana]
Length = 822
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 223/439 (50%), Positives = 314/439 (71%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 248 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 307
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ RVL+L PTREL +QVHS+ +++AQF I CL VGGL K QE ALR+ PD
Sbjct: 308 YKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPD 367
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 368 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 427
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 428 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT 487
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F+ V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 488 FSDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 547
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K
Sbjct: 548 VAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKS 607
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++ K
Sbjct: 608 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEIQQSEAQINTAKRLLEKGK 667
Query: 421 EEIFARPKRTWFVTEKEKK 439
E P+R+WF T++E+K
Sbjct: 668 EAQNQEPERSWFQTKEERK 686
>gi|154282923|ref|XP_001542257.1| 2-isopropylmalate synthase [Ajellomyces capsulatus NAm1]
gi|150410437|gb|EDN05825.1| 2-isopropylmalate synthase [Ajellomyces capsulatus NAm1]
Length = 1466
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/455 (50%), Positives = 325/455 (71%), Gaps = 6/455 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+LSRP+LR ++G++ PTPIQ IP+AL G+D+ G A+TGSGKT AF +P LERLLY
Sbjct: 310 FSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILERLLY 369
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RP+++P RV IL PTRELAVQ +++ K+A FTDI C +VGG S + QE L+ PD+
Sbjct: 370 RPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDV 429
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 430 IIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFS 489
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T +VD+LI++ L++P+RL D + TL +E VR+R RE + L+ LC +
Sbjct: 490 ATMTNNVDKLIRVGLSRPVRLMVDAKKQTVGTLIQEFVRLRPGREEKRLGYLIVLCKNIY 549
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+VI+F +K+ AHR++I+FGL LK ELHG+++Q QR++++E FR V FL+ATDV
Sbjct: 550 KDRVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQEQRIKSVESFRDGKVSFLLATDV 609
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++KA K
Sbjct: 610 ASRGLDIKGVETVINYEAPQSHAIYLHRVGRTARAGRSGRACTLAAEPDRKVVKAAVKTG 669
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR++ KW+ +E+M+++V IL+EE+EE+ L +AEME T+ N++ H
Sbjct: 670 RAQGAKIVSRLIETAEADKWAAKVEEMQEEVQEILREEKEEKQLAQAEMEVTRGSNLLNH 729
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKG 454
++EI +RPKRTWF +EKEK ++A + S+E+ G
Sbjct: 730 EKEIMSRPKRTWFESEKEK---LQAKQRSLEELNG 761
>gi|358370127|dbj|GAA86739.1| ATP-dependent RNA helicase [Aspergillus kawachii IFO 4308]
Length = 832
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 243/500 (48%), Positives = 339/500 (67%), Gaps = 21/500 (4%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E NLSRP+LR + +S PTPIQ IP+AL G+DI GSA+TGSGKTAAF +P LERLL
Sbjct: 318 EFNLSRPILRGLAGVNFSNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLL 377
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+RP+++P RV IL PTRELAVQ +++ K+A +TDI C +VGG S + QE L+ PD
Sbjct: 378 FRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKRPD 437
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLF
Sbjct: 438 VIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLF 497
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ VD+LI++ L +P+RL D TL +E VR+R RE + LL LC +
Sbjct: 498 SATMTDTVDKLIRVGLNRPVRLMVDAKKNTAVTLVQEFVRLRPGREDKRLGYLLYLCKEL 557
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+T +VI+F K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR+ FL+ATD
Sbjct: 558 YTGRVIVFFRQKKEAHRVRIIFGLLGLKAAELHGSMSQEQRIKSVENFREGKAAFLLATD 617
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+A+RGLDI GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++KA K
Sbjct: 618 LASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKA 677
Query: 362 A---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 418
G+K+ SR++ W+ E++ ++V +L EE+ E+ L +AEM+ TK EN+I
Sbjct: 678 GKSQGAKIASRVIEPAVADSWAAKAEELAEEVEEVLSEEKLEKQLAQAEMQVTKGENLIK 737
Query: 419 HKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRER 478
H+ EI +RPKRTWF TE++KK A K A + G +G L KEK+K
Sbjct: 738 HEAEIKSRPKRTWFETERDKKAARKLGAAEL-NGPDAG-----------LSKKEKQK--- 782
Query: 479 EKNLPRKERRKLEAAREMLE 498
L K++++L+ +R+ E
Sbjct: 783 ---LSNKDKKRLDDSRQRQE 799
>gi|295664398|ref|XP_002792751.1| ATP-dependent RNA helicase drs1 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226278865|gb|EEH34431.1| ATP-dependent RNA helicase drs1 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 835
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 227/439 (51%), Positives = 317/439 (72%), Gaps = 3/439 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+LSRP+LR ++G++ PTPIQ IP+AL G+D+ G A+TGSGKT AF +P LERLLY
Sbjct: 318 FSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILERLLY 377
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RP+++P RV IL PTRELAVQ +++ K+A +TDI C +VGG S + QE L+ PD+
Sbjct: 378 RPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKRPDV 437
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 438 IIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFS 497
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T +D+LI++ L +P+RL + + TL +E VR+R RE + L++LC +
Sbjct: 498 ATMTNTIDKLIRVGLNRPVRLMVNAQKQTVGTLVQEFVRLRPGREDKRLGYLVTLCKTVY 557
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+VIIF K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR V FL+ATD+
Sbjct: 558 KDRVIIFFRAKKEAHRVRIIFGLFGLKAAELHGSMSQEQRIKSVESFRDGKVSFLLATDL 617
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++KA K
Sbjct: 618 ASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKTG 677
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR++ KW+ +E+MED+V IL+EE+EE+ L +AEME T+ N+I+H
Sbjct: 678 RAQGAKIVSRLIDVAEADKWAAKVEEMEDEVKEILKEEKEEKQLAQAEMEVTRGSNLISH 737
Query: 420 KEEIFARPKRTWFVTEKEK 438
++EI +RPKRTWF +EKEK
Sbjct: 738 EKEIMSRPKRTWFESEKEK 756
>gi|345563744|gb|EGX46729.1| hypothetical protein AOL_s00097g477 [Arthrobotrys oligospora ATCC
24927]
Length = 854
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 227/435 (52%), Positives = 313/435 (71%), Gaps = 2/435 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRP+LR + ++ PT IQ+ IP+AL RDI G A+TGSGKTAA+ +P LERLL
Sbjct: 323 QMNLSRPILRGLGHINFTTPTAIQSRTIPIALLARDIVGGAVTGSGKTAAYMVPILERLL 382
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
YRPK++ RV+ILTPTRELA+QVH++ K+A FTDI+ L VGGLS K QE LR PD
Sbjct: 383 YRPKKVAQTRVVILTPTRELAIQVHAVAVKLAAFTDIKFTLAVGGLSLKAQEAELRQRPD 442
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR IDH+RNS S D + +L+LDEADR+LE GF+ E+ E+++ PK RQTMLF
Sbjct: 443 IVIATPGRFIDHMRNSASFHTDGIEILVLDEADRMLEDGFADELDEILKTLPKSRQTMLF 502
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ VD+L+++ + KP+RL D +TLT+E +RIR RE + A+L+ L ++
Sbjct: 503 SATMTDSVDKLVRVGMQKPVRLLVDSKKSTVATLTQEFIRIRPGREGGRLAMLVLLATEL 562
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ S+ I+F +K AHR++I+FGL LKAAELHG+L+Q QR++A+E FR VDFL+ATD
Sbjct: 563 YKSRCIVFFRSKVYAHRVRIIFGLLGLKAAELHGSLSQEQRIKAVEQFRDGTVDFLLATD 622
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL-KAI-A 359
+A+RGLDI V VIN+ P+ Y HRVGRTARAGR G A+T + DR ++ KAI A
Sbjct: 623 LASRGLDIKNVSYVINFELPQSHEIYTHRVGRTARAGRSGRAITLAAEADRKIVKKAIKA 682
Query: 360 KRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
+ K+ SR + + + ++ + MED + AIL++E+EE+ L + EM+ K ENMI +
Sbjct: 683 GQENGKVVSRTLDISKVDEMTEKLNGMEDDIEAILEDEKEEKQLLQVEMQLRKGENMIKY 742
Query: 420 KEEIFARPKRTWFVT 434
+EEI +RP+RTWF T
Sbjct: 743 EEEIASRPRRTWFET 757
>gi|296808427|ref|XP_002844552.1| ATP-dependent RNA helicase drs1 [Arthroderma otae CBS 113480]
gi|238844035|gb|EEQ33697.1| ATP-dependent RNA helicase drs1 [Arthroderma otae CBS 113480]
Length = 807
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/440 (52%), Positives = 318/440 (72%), Gaps = 3/440 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRP+LR ++G+S PTPIQ IP+AL G+D+ G A+TGSGKTAAF +P LERLLY
Sbjct: 298 LSLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTAAFIVPILERLLY 357
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RP+++P RV IL PTRELAVQ +++ K+A FTDI C +VGG S + QE L+ PD+
Sbjct: 358 RPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDV 417
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D L +LILDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 418 IIATPGRFIDHMRNSASFTVDTLEILILDEADRMLEDGFAEELNEILTTIPKSRQTMLFS 477
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD+LI++ L KP+RL D + TL +E VR+R RE + A L+ LC +
Sbjct: 478 ATMTSSVDKLIRVGLNKPIRLMVDSKKQTVGTLVQEFVRLRPGREDKRLAYLMFLCKTVY 537
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
TS+VI+F K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR V +L+ATD+
Sbjct: 538 TSRVIVFFRQKKEAHRVRIVFGLMGLKAAELHGSMSQEQRIKSVEDFRDGKVSYLLATDL 597
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++K K
Sbjct: 598 ASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKEAVKAG 657
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR++ KW++ + + +V +LQEE+EE+ L +AEM+ T+ +N+I H
Sbjct: 658 RAQGAKIVSRVIDPAMADKWAEQVNDLATEVEEVLQEEKEEKQLAQAEMQVTRGKNLIGH 717
Query: 420 KEEIFARPKRTWFVTEKEKK 439
++EI +RPKRTWF +EK+K+
Sbjct: 718 QDEIMSRPKRTWFESEKDKR 737
>gi|395506879|ref|XP_003757757.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Sarcophilus
harrisii]
Length = 766
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 223/438 (50%), Positives = 314/438 (71%), Gaps = 3/438 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 196 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 255
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ +++AQF+ + CL VGGL K QE ALR+ PD
Sbjct: 256 YKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSTVTTCLAVGGLDVKSQEAALRAGPD 315
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E+++LC RQTMLF
Sbjct: 316 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIQLCSHHRQTMLF 375
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 376 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALLTRT 435
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+QAQRLEAL F+ + +D L+ATD
Sbjct: 436 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQAQRLEALRRFKDEQIDILVATD 495
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K
Sbjct: 496 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKS 555
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 421
A + +K+RI+ + I K+ IE+ME V A+L+ E EE+ ++ +E + A+ ++
Sbjct: 556 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLRLEAEEKEMQHSEAQINTAKRLLEKGN 615
Query: 422 EIFARPKRTWFVTEKEKK 439
E P+RTWF ++E+K
Sbjct: 616 E---EPERTWFQNKEERK 630
>gi|432110218|gb|ELK33991.1| Putative ATP-dependent RNA helicase DDX27 [Myotis davidii]
Length = 863
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 222/439 (50%), Positives = 315/439 (71%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+ + +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 191 DMNLSRPLLKAITAMNFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 250
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ +++AQF +I CL VGGL K QE ALR+ PD
Sbjct: 251 YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAAPD 310
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 311 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 370
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 371 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALLTRT 430
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLE+L F+ + +D L+ATD
Sbjct: 431 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLESLRRFKDEQIDILVATD 490
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAG+ G +V+ V + +R +LK I K
Sbjct: 491 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGKAGRSVSLVGEEERKMLKEIVKA 550
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++ K
Sbjct: 551 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGK 610
Query: 421 EEIFARPKRTWFVTEKEKK 439
E P+R+WF T++E+K
Sbjct: 611 EAQNHEPERSWFQTKEERK 629
>gi|449486366|ref|XP_002191498.2| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
[Taeniopygia guttata]
Length = 757
Score = 467 bits (1201), Expect = e-128, Method: Compositional matrix adjust.
Identities = 223/440 (50%), Positives = 313/440 (71%), Gaps = 2/440 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A ALG+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAF LP LERL+
Sbjct: 183 DMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVLERLI 242
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ +++AQF+++ CL VGGL K QE ALRS PD
Sbjct: 243 YKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSNVTTCLAVGGLDVKTQEAALRSGPD 302
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++RLC RQTMLF
Sbjct: 303 ILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSHHRQTMLF 362
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+TE+V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 363 SATMTEEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVTALLTRT 422
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLE+L F+ + +D L+ATD
Sbjct: 423 FQDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQTQRLESLRRFKDEQIDILVATD 482
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAG+ G +V+ V + +R +LK I K
Sbjct: 483 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGKAGRSVSLVGEEERKMLKEIVKT 542
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI--AH 419
A + +K+RI+ + I K+ + IE +E + A+L EREER ++++E + KA+ +
Sbjct: 543 AKTPVKARILPQDVILKFREKIENLEKDIYAVLCLEREEREMQQSEAQINKAKKQLETGK 602
Query: 420 KEEIFARPKRTWFVTEKEKK 439
KE +R+WF T +E+K
Sbjct: 603 KEAGSESLERSWFQTREERK 622
>gi|321257748|ref|XP_003193695.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276]
gi|317460165|gb|ADV21908.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276]
Length = 790
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 253/494 (51%), Positives = 344/494 (69%), Gaps = 15/494 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+NLSRPLLRA +L ++ PTPIQA IPLAL GRDI GSA+TGSGKTAAF +P LERL Y
Sbjct: 209 MNLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPILERLCY 268
Query: 63 RP--KRIPAIRVLILTPTRELAVQVHSMIEKIAQ--FTDIRCCLVVGGLSTKMQETALRS 118
R K A RVL+L PTRELAVQ ++ + +A+ D+R L+VGGLS Q LR+
Sbjct: 269 RDRGKGGAACRVLVLCPTRELAVQCEAVGKALAEKGGLDVRFALLVGGLSLNAQAHTLRT 328
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
+PDI++ATPGR+IDHL N+ S L L VL++DEADR+LE GF+ E+ E+++ CP+ RQT
Sbjct: 329 LPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEADRMLEAGFTDELEEIIKACPRSRQT 388
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
MLFSAT+T+ VDEL+KLSL KP+R+ DP LT+E VRIR + ++ LL+LC
Sbjct: 389 MLFSATMTDSVDELVKLSLDKPIRVFVDPKRNTAKGLTQEFVRIRS--DDSRSPSLLALC 446
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+T K IIF +K AH+++I+FGL LKAAELHGNLTQ QRL+AL F+ VD+L+
Sbjct: 447 KRTIREKCIIFFRSKALAHQMRIVFGLFGLKAAELHGNLTQEQRLQALNDFKASTVDYLL 506
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+A+RGLDI GV+TVINY P L Y HRVGRTARAGR+G +++ V + DR +LKA
Sbjct: 507 ATDLASRGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSISLVGEADRKMLKAA 566
Query: 359 AKRA-GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 417
K+A +++ RI+ +++T + +E +D + IL+EE+EE++LR+A+ME K +NM+
Sbjct: 567 IKQAEADQVRHRIIPSEAVTAMKEKLEGFKDDIQEILKEEKEEKLLRQADMEIKKGQNMV 626
Query: 418 AHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRE 477
H+ EIF+RP RTWF + KEK+ + A K + S ++ T + KEK KR
Sbjct: 627 EHEAEIFSRPARTWFQSGKEKQASKNAGKDAYVGSFPSKDKSTETE-------KEKLKRG 679
Query: 478 REKNLPRK-ERRKL 490
+ L R+ +RRK+
Sbjct: 680 KYDGLSRRLKRRKM 693
>gi|327295054|ref|XP_003232222.1| ATP-dependent RNA helicase DRS1 [Trichophyton rubrum CBS 118892]
gi|326465394|gb|EGD90847.1| ATP-dependent RNA helicase DRS1 [Trichophyton rubrum CBS 118892]
Length = 813
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 228/440 (51%), Positives = 316/440 (71%), Gaps = 3/440 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRP+LR ++G+S PTPIQ IP+AL G+D+ G A+TGSGKT AF +P LERLLY
Sbjct: 301 LSLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIVPILERLLY 360
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RP+++P RV IL PTRELAVQ +++ K+A FTDI C +VGG S + QE L+ PD+
Sbjct: 361 RPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDV 420
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 421 IIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFAEELNEILTTIPKSRQTMLFS 480
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD+LI+L L KP+RL D + TL +E VR+R RE + L+ LC +
Sbjct: 481 ATMTSSVDKLIRLGLNKPVRLMVDSKKQTVGTLVQEFVRLRPGREDKRLGYLMFLCKTVY 540
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T++VI+F K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR V +L+ATD+
Sbjct: 541 TNRVIVFFRQKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVEDFRDAKVSYLLATDL 600
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++K K
Sbjct: 601 ASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKEAVKAG 660
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR++ KW++ + + +V +LQEE+EE+ L +AEM+ T+ +N+I H
Sbjct: 661 RAQGAKIVSRVIEPAVADKWAEQVNDLATEVEEVLQEEKEEKQLAQAEMQVTRGKNLIDH 720
Query: 420 KEEIFARPKRTWFVTEKEKK 439
+EEI +RPKRTWF +EKEK+
Sbjct: 721 QEEIMSRPKRTWFESEKEKR 740
>gi|340372235|ref|XP_003384650.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
[Amphimedon queenslandica]
Length = 598
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 224/431 (51%), Positives = 308/431 (71%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A LG++ PT +QA IPLAL G+DIC A TG+GKTAAF LP LERLL
Sbjct: 149 DMNLSRPLLKAVTLLGFTSPTSVQARTIPLALMGKDICACAATGTGKTAAFMLPILERLL 208
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
YRP R+ + RVLIL PTRELA+QVHS+ + +AQ T I CL GGL + QE +LR PD
Sbjct: 209 YRPTRMRSTRVLILLPTRELAIQVHSVGKALAQNTKIDLCLAAGGLEGRSQEASLRKSPD 268
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR++DHL N+ S L + +L+LDEADR+L+ F +++E++RLCP RQT+LF
Sbjct: 269 IVIATPGRLVDHLHNTPSFSLQAIEILVLDEADRMLDEHFLDQMNEIIRLCPVSRQTLLF 328
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V+EL +LSL P+R+ D + L +E VRIR +E ++EA++ +LC ++
Sbjct: 329 SATMTDEVEELARLSLHNPVRVFVDSNTDTADNLHQEFVRIRSNKEADREAIVSALCLRS 388
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F ++F TK+ AHR +++ GL +K +ELHG+LTQ QRLEAL+ F++ VD LIATD
Sbjct: 389 FKDHCLVFVPTKKQAHRQRLILGLLGIKTSELHGSLTQLQRLEALKGFKEAEVDILIATD 448
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARGLDI V+TVINY+ P + Y+HRVGRTARAG+ G +VT V + R +LK I K
Sbjct: 449 LAARGLDIENVRTVINYSMPPTVKQYIHRVGRTARAGKSGKSVTLVGEKGRKVLKEIVKG 508
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 421
A K+R++ + I K+ I +E ++ IL++E EE+ +R A+ME TKA NMI H +
Sbjct: 509 AKCPPKNRVIPAEVIEKYKSKISSLESEIRDILKQEEEEKQVRVAQMEVTKANNMIVHHD 568
Query: 422 EIFARPKRTWF 432
EI +RP R WF
Sbjct: 569 EIHSRPPRVWF 579
>gi|342889281|gb|EGU88436.1| hypothetical protein FOXB_01039 [Fusarium oxysporum Fo5176]
Length = 797
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 252/564 (44%), Positives = 360/564 (63%), Gaps = 37/564 (6%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRP+LR +G+SKPTPIQA IP+AL G+D+ G A+TGSGKT AF +P LERLLY
Sbjct: 263 MSLSRPILRGLATVGFSKPTPIQAKSIPIALMGKDLVGGAVTGSGKTGAFIVPILERLLY 322
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK+IP RV++LTPTRELA+Q H++ K+A FTDI+ L VGGLS K QE L+ PD+
Sbjct: 323 RPKKIPTTRVVVLTPTRELAIQCHAVATKLAAFTDIKFTLAVGGLSLKAQEVELKLRPDV 382
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D + +++LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 383 IIATPGRFIDHMRNSASFSVDTVEIMVLDEADRMLEDGFADELNEILTTLPKSRQTMLFS 442
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD LIK+ L KP R+ D K +TL +E VR+R RE + L +C +
Sbjct: 443 ATMTSTVDRLIKIGLNKPARVMVDSQKKTVTTLVQEFVRLRPGREEKRMGYLAHVCKNLY 502
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+VIIF K+ AHR +I+FGL L AELHG++ Q QR+ ++E FR V +L+ATD+
Sbjct: 503 KERVIIFFRQKKEAHRARIIFGLLGLSCAELHGSMNQTQRISSVEDFRDGKVAYLLATDL 562
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV TVINY P+ L YVHRVGRTARAGR+G A+T ++ DR ++KA K
Sbjct: 563 ASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRKGTALTLASETDRKVVKAAVKAG 622
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR + + I++M+D++ I+QEE+EE+ L EM+ K EN+I H
Sbjct: 623 KAQGAKIVSRQIEAAEVDALQAQIDEMDDEIEEIMQEEKEEKQLAHVEMQVKKGENLIQH 682
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRERE 479
+ EI RP+RTWF +E +KK + +A K +E+ ++A +++
Sbjct: 683 EAEIKGRPRRTWFESEHDKKQSKQAGK----------DELNGMREA---------MKKKT 723
Query: 480 KNLPRKERRKLEAAREMLEDEDQVDKLQGSGKDKKEKAGISMVDLAYRRAKAVKAKQKAL 539
L K++++L+A + + +G G+ +K K+ S D+ R + K++ K
Sbjct: 724 GKLSNKDKKRLDAKQL---------RAEGGGEWRKGKS--SEADMKARHKEQAKSRAK-- 770
Query: 540 DAGKIVKSNGKKSKHSSQESNSRA 563
G+ K GK + S + RA
Sbjct: 771 --GRATKEGGKDAAPSKPKGKGRA 792
>gi|334312364|ref|XP_001379053.2| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Monodelphis
domestica]
Length = 891
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 220/438 (50%), Positives = 313/438 (71%), Gaps = 3/438 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A +G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 322 DMNLSRPLLKAITTMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 381
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ +++AQF+ + CL VGGL K QE ALR+ PD
Sbjct: 382 YKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSTVTTCLAVGGLDVKSQEAALRAGPD 441
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++++C RQTMLF
Sbjct: 442 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIQMCSHHRQTMLF 501
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 502 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALLTRT 561
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 562 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 621
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K
Sbjct: 622 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKS 681
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 421
A + +K+RI+ + I K+ IE+ME V A+L+ E EE+ ++ +E + A+ ++
Sbjct: 682 AKAPVKARILPQDVILKFRGKIEKMEKDVYAVLRLEAEEKEMQHSEAQINTAKRLLEKGN 741
Query: 422 EIFARPKRTWFVTEKEKK 439
E P+RTWF +++E+K
Sbjct: 742 E---EPERTWFQSKEERK 756
>gi|351703078|gb|EHB05997.1| Putative ATP-dependent RNA helicase DDX27 [Heterocephalus glaber]
Length = 765
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 259/602 (43%), Positives = 378/602 (62%), Gaps = 29/602 (4%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 191 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 250
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ ++AQF I CL VGGL K QE ALR+ PD
Sbjct: 251 YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCSITTCLAVGGLDVKSQEAALRAAPD 310
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 311 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 370
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 371 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT 430
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 431 FTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 490
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K
Sbjct: 491 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKA 550
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I ++ IE+ME V A+LQ E EER ++++E + A+ ++ K
Sbjct: 551 AKAPVKARILPQDVILRFRDRIEKMEKDVYAVLQLEAEEREMQQSEAQINTAKRLLEKGK 610
Query: 421 EEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREK 480
E P+R+WF T++E+K ++ A Q DL ++ K+KR +
Sbjct: 611 EAPDQEPERSWFQTKEERK----------------KEKIGKALQEFDLALRGKKKRRKFM 654
Query: 481 NLPRKERRKLEAAREMLEDEDQVDKLQGSGKDKKEKAGISMVDLAYRRAKAVKAKQKALD 540
+K+ R E + K Q + +++ + A + KA K
Sbjct: 655 KDAKKKGEMTAEERSQFE----ILKAQMFAERLAKRSRRAKRARAMPEEEPAKAPAK--- 707
Query: 541 AGKIVKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHSFKSKSRYK 600
K N +K +E + +K+ + + + S +++K+ G ++ +FKSKSRYK
Sbjct: 708 -----KQNPRKKSVFDEELTNTSKKALKQYRAGPSFEEKKQFGLPHQRKGGNFKSKSRYK 762
Query: 601 RR 602
RR
Sbjct: 763 RR 764
>gi|302654026|ref|XP_003018826.1| hypothetical protein TRV_07145 [Trichophyton verrucosum HKI 0517]
gi|291182505|gb|EFE38181.1| hypothetical protein TRV_07145 [Trichophyton verrucosum HKI 0517]
Length = 814
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 227/444 (51%), Positives = 319/444 (71%), Gaps = 3/444 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRP+LR ++G+S PTPIQ IP+AL G+D+ G A+TGSGKT AF +P LERLLY
Sbjct: 302 LSLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIVPILERLLY 361
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RP+++P RV IL PTRELAVQ +++ K+A FTDI C +VGG S + QE L+ PD+
Sbjct: 362 RPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDV 421
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 422 IIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFAEELNEILTTIPKSRQTMLFS 481
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD+LI++ L KP+RL D + TL +E VR+R RE + L+ LC +
Sbjct: 482 ATMTNSVDKLIRVGLNKPVRLMVDSKKQTVGTLVQEFVRLRPGREDKRLGYLMFLCKTVY 541
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T++VI+F K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR V +L+ATD+
Sbjct: 542 TNRVIVFFRQKKEAHRVRIVFGLMGLKAAELHGSMSQEQRIKSVEDFRDAKVSYLLATDL 601
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++K K
Sbjct: 602 ASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKEAVKAG 661
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR++ KW++ ++ + +V +LQEE+EE+ L +AEM+ T+ +N+I H
Sbjct: 662 RAQGAKIVSRVIEPAVADKWAEQVDDLATEVEEVLQEEKEEKQLAQAEMQVTRGKNLIDH 721
Query: 420 KEEIFARPKRTWFVTEKEKKLAVK 443
+EEI +RPKRTWF +EK+K+ + K
Sbjct: 722 QEEIMSRPKRTWFESEKDKRASKK 745
>gi|449684384|ref|XP_002156411.2| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27-like [Hydra magnipapillata]
Length = 544
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 215/435 (49%), Positives = 312/435 (71%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+NLSRPLL+A LG+ PT IQ++ IP+AL G+D+C A TGSGKTAAF LP LERLL+
Sbjct: 1 MNLSRPLLKAINELGFEHPTKIQSSTIPIALLGKDLCACATTGSGKTAAFMLPILERLLF 60
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+PK+ ++L++ + V V+S+ E +A+F++I+ L GGL ++ QE LR PD+
Sbjct: 61 KPKQTAXTKILLVFICKNFCVXVYSVSESLAKFSNIQLGLATGGLDSRSQEAILRKNPDV 120
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V+ATPGR+IDHL N+ S +L + +L+LDEADR+LE F ++ E++RLCP+ RQTMLFS
Sbjct: 121 VIATPGRLIDHLHNTPSFNLQTIEILVLDEADRMLEEHFHDQMKEIIRLCPRGRQTMLFS 180
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T++V+ L+ LSL P++L D + S+L +E VRIR RE ++ AV+++LC ++F
Sbjct: 181 ATMTDEVNALMSLSLNNPVKLFVDQNTDVASSLHQEFVRIRSTREADRLAVVVALCCRSF 240
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+ ++F TK AH+L+I+FGL LKAAELHGNLTQ QRLEALE F+ VD L+ATD+
Sbjct: 241 NQQTLVFLQTKVLAHKLRIIFGLFGLKAAELHGNLTQLQRLEALEKFKNNEVDILVATDL 300
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
AARGLDI+GV+TVI++ P + SY+HRVGRTARAG+ G ++T V + +R +LK + K A
Sbjct: 301 AARGLDIVGVKTVISFNMPTTIKSYIHRVGRTARAGKAGRSITLVGEKERKMLKEVVKNA 360
Query: 363 GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEE 422
+K+RI++ + + K+ +E E + IL+EE + LR AEME KA+N+I H +E
Sbjct: 361 KIPVKNRILSTEVVEKYKNKLESFEKDIKEILKEEESAKQLRVAEMEMNKAKNLIEHHDE 420
Query: 423 IFARPKRTWFVTEKE 437
I +RP +T+ T+K+
Sbjct: 421 IMSRPAKTFIKTQKQ 435
>gi|302499800|ref|XP_003011895.1| hypothetical protein ARB_01875 [Arthroderma benhamiae CBS 112371]
gi|291175449|gb|EFE31255.1| hypothetical protein ARB_01875 [Arthroderma benhamiae CBS 112371]
Length = 814
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 226/440 (51%), Positives = 316/440 (71%), Gaps = 3/440 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRP+LR ++G+S PTPIQ IP+AL G+D+ G A+TGSGKT AF +P LERLLY
Sbjct: 302 LSLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIVPILERLLY 361
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RP+++P RV IL PTRELAVQ +++ K+A FTDI C +VGG S + QE L+ PD+
Sbjct: 362 RPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDV 421
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 422 IIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFAEELNEILTTIPKSRQTMLFS 481
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD+LI++ L KP+RL D + TL +E VR+R RE + L+ LC +
Sbjct: 482 ATMTNSVDKLIRVGLNKPVRLMVDSKKQTVGTLVQEFVRLRPGREDKRLGYLMFLCKTVY 541
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T++VI+F K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR V +L+ATD+
Sbjct: 542 TNRVIVFFRQKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVEDFRDAKVSYLLATDL 601
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++K K
Sbjct: 602 ASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKEAVKAG 661
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR++ KW++ + + +V +LQEE+EE+ L +AEM+ T+ +N+I H
Sbjct: 662 RAQGAKIVSRVIEPAVADKWAEQVNDLATEVEEVLQEEKEEKQLAQAEMQVTRGKNLIDH 721
Query: 420 KEEIFARPKRTWFVTEKEKK 439
+EEI +RPKRTWF +EK+K+
Sbjct: 722 QEEIMSRPKRTWFESEKDKR 741
>gi|348564128|ref|XP_003467857.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Cavia
porcellus]
Length = 803
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 226/439 (51%), Positives = 314/439 (71%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 229 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 288
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ +++AQF I CL VGGL K QE ALR+ PD
Sbjct: 289 YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPD 348
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 349 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 408
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+TE+V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L +++
Sbjct: 409 SATMTEEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRS 468
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 469 FTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 528
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K
Sbjct: 529 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKA 588
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+LQ E EER ++ +E + A+ ++ K
Sbjct: 589 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEREMQHSEAQINAAQRLLEKGK 648
Query: 421 EEIFARPKRTWFVTEKEKK 439
E P+R+WF T++E+K
Sbjct: 649 EAPDKEPERSWFQTKEERK 667
>gi|348544540|ref|XP_003459739.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Oreochromis
niloticus]
Length = 736
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 257/611 (42%), Positives = 382/611 (62%), Gaps = 54/611 (8%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRP+L+A ALG+ +PTPIQ AC+P+ L G+D+C A TG+GKTAAF LP LERL+
Sbjct: 170 DMNLSRPILKAITALGFKQPTPIQKACVPVGLLGKDLCACAATGTGKTAAFMLPVLERLV 229
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P+ RVL+L PTREL +QVHS+ ++AQFT I CL VGGL K QE ALR+ PD
Sbjct: 230 YKPRTSQVTRVLVLVPTRELGIQVHSVARQLAQFTSITTCLAVGGLDLKSQEAALRAGPD 289
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N+ S +L + +LILDEADR+L+ F ++ E++RLC RQTMLF
Sbjct: 290 ILIATPGRLIDHLHNTPSFELTHIEILILDEADRMLDEYFEEQMKEIIRLCSYNRQTMLF 349
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+TE+V +L +SL +P+R+ + + L +E VRIR RE ++EAV+ +L ++T
Sbjct: 350 SATMTEEVKDLAAVSLKQPVRIFVNSNTDVAPFLRQEFVRIRPHREGDREAVVAALLTRT 409
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F V++F+ T++ AHRL IL GL LK ELHG L+Q QRLE L F+ + +D L+ATD
Sbjct: 410 FQDHVMLFTQTRKQAHRLHILLGLMGLKVGELHGELSQNQRLENLRRFKDEQIDILVATD 469
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK + K
Sbjct: 470 VAARGLDIDGVKTVINFTMPGTVKHYVHRVGRTARAGRSGRSVSLVGESERKMLKEVVKS 529
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 421
A S +K+RI+ + I K+ +I ++E V A+++ EREER E+ A++A+ +A K
Sbjct: 530 AKSTVKARILPPEVILKFRDLISKLEKDVEAVMKLEREER-----ELAASEAKLSVAQKR 584
Query: 422 EIFA----RPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRE 477
+ + +R WF T++E+K + ++ A Q DL I+ K+KRE
Sbjct: 585 LTDSASSDQSQRVWFQTQQERK----------------QSRMSKALQEFDLAIRGKKKRE 628
Query: 478 ------REKNLPRKERRKLEAAREMLEDEDQVDKLQGSGKDKKEKAGISMVDLAYRRAKA 531
R+K L +ER + E + + E + + ++++ K RA+A
Sbjct: 629 KFLKDGRKKELTSEERAQFEILKAQMFAE------RAAKRERRPK-----------RARA 671
Query: 532 VKAKQKALDAGKIVKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKH 591
+ + A + GKKS + +N+ +K +++ + + S +KR G K+P
Sbjct: 672 MPEDEAPTKANQKAGKGGKKSVFDKELTNTSSKALKQ-YRAGPSFADRKRLGVDRKRP-- 728
Query: 592 SFKSKSRYKRR 602
SR++R+
Sbjct: 729 ---GTSRFRRK 736
>gi|291239420|ref|XP_002739621.1| PREDICTED: Rs1-like [Saccoglossus kowalevskii]
Length = 563
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 221/436 (50%), Positives = 310/436 (71%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+NLSRPLL+A A+ + PTPIQ A IP+AL G+DIC A TG+GKTAAF LP LERLLY
Sbjct: 1 MNLSRPLLKAINAMNFVHPTPIQVATIPVALLGKDICACAATGTGKTAAFMLPVLERLLY 60
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+PK+ RVL+L PTREL +QVHS+ ++AQFT+I CL VGGL K+QE LR PDI
Sbjct: 61 KPKQAAVTRVLVLVPTRELGIQVHSVTRQLAQFTEIDSCLAVGGLDVKLQEAVLRQGPDI 120
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V+ATPGR+IDHL N+ S L ++ +LILDEADR+L+ F ++ E++R+C RQTMLFS
Sbjct: 121 VIATPGRLIDHLHNAPSFSLSNIEILILDEADRMLDEYFEEQMKEIIRMCSITRQTMLFS 180
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T++V +L+ +SL P+RL + + L +E +RIR RE ++EA+ +LCS+TF
Sbjct: 181 ATMTDEVKDLVAVSLKNPVRLFINENTDVAYNLRQEFIRIRENREGDREAIAAALCSRTF 240
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
VI+F TK+ HRL I+ G+ L ELHGNL+Q QRLE L F++ ++D ++ATD+
Sbjct: 241 HDHVIVFVQTKKQCHRLHIILGMLGLNVGELHGNLSQTQRLETLRRFKESNIDIMLATDL 300
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
AARGLDI G++T+IN+ P + YVHRVGRTARAG+ G +V+ + +R +LK I KRA
Sbjct: 301 AARGLDIEGIKTIINFTMPNTVKHYVHRVGRTARAGKSGRSVSLCGEKERKMLKEIVKRA 360
Query: 363 GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEE 422
+ +KSR+V + K+ IE+ME + I++ E EE+ LR +E++ KA+ +I H +E
Sbjct: 361 RNPVKSRVVPPDIVAKYRDKIEKMETDIEKIIKLEEEEKELRISELQVNKAKAIIEHHDE 420
Query: 423 IFARPKRTWFVTEKEK 438
I++RPKR+WF + E+
Sbjct: 421 IYSRPKRSWFQSHMER 436
>gi|121700981|ref|XP_001268755.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus clavatus
NRRL 1]
gi|142982514|sp|A1CNV8.1|DRS1_ASPCL RecName: Full=ATP-dependent RNA helicase drs1
gi|119396898|gb|EAW07329.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus clavatus
NRRL 1]
Length = 826
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 228/445 (51%), Positives = 320/445 (71%), Gaps = 3/445 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ NLSRP+LR ++ ++ PTPIQ IP+AL G+DI GSA+TGSGKTAAF +P LERLL
Sbjct: 310 DFNLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLL 369
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+RP+++P RV IL PTRELAVQ +++ K+A TD+ C +VGG S + QE L+ PD
Sbjct: 370 FRPRKVPTSRVAILMPTRELAVQCYNVATKLATHTDVTFCQLVGGFSLREQENILKKRPD 429
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLF
Sbjct: 430 VIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLF 489
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ VD+LI++ L +P+RL D LT+E VR+R RE + LL LCS+
Sbjct: 490 SATMTDSVDKLIRVGLNRPVRLMVDSKKNTSMNLTQEFVRLRPGREGKRLGYLLYLCSEI 549
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT +VI+F K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR+ V FL+ATD
Sbjct: 550 FTGRVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFREGKVAFLLATD 609
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA---I 358
+A+RGLDI GV+TVINY P+ Y+HRVGRTARAGR G A T D DR ++KA
Sbjct: 610 LASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAADPDRKVVKAAVRA 669
Query: 359 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 418
K G+K+ SR+V +W+ +E +E+++ +L+EE+ E+ + +AEM+ TK EN++
Sbjct: 670 GKAQGAKIASRVVEPAVADQWAAKVEALEEEIEEVLKEEKLEKHMAQAEMQVTKGENLMK 729
Query: 419 HKEEIFARPKRTWFVTEKEKKLAVK 443
H EI +RPKRTWF TE++K+ + K
Sbjct: 730 HGAEIMSRPKRTWFETERDKRASRK 754
>gi|332021296|gb|EGI61675.1| Putative ATP-dependent RNA helicase DDX27 [Acromyrmex echinatior]
Length = 740
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 227/439 (51%), Positives = 313/439 (71%), Gaps = 4/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A + + +PTPIQAA IP AL GRDICG A TG+GKTAA+ LP LERLL
Sbjct: 155 QMNLSRPLLKAITTMNFVQPTPIQAATIPAALMGRDICGCAATGTGKTAAYMLPILERLL 214
Query: 62 YRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
YRP P+I RVL+L PTREL VQV+ + +++AQFT I L VGGL K+QE LR P
Sbjct: 215 YRPLDGPSISRVLVLVPTRELGVQVYQVAKQLAQFTTIEIGLSVGGLDVKIQEGVLRKNP 274
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ATPGR+IDHLRN+ + LD + VLILDEADR+L+ F+ ++ +V+ C + RQT+L
Sbjct: 275 DIVIATPGRLIDHLRNAPTFSLDSIEVLILDEADRMLDEYFAEQMKYIVKQCSRTRQTIL 334
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE+V++L +SL KP+++ D + L +E +RIR+ RE ++EA+L +L +
Sbjct: 335 FSATMTEEVEDLAAVSLDKPIKIFVDSNQDVAFNLRQEFIRIRKEREGDREAILAALVCR 394
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF ++F TK+ AHRL IL GL +K ELHGNLTQ QRLE L F+ + +D L+AT
Sbjct: 395 TFHDHTMVFLQTKKQAHRLHILLGLLGVKVGELHGNLTQPQRLENLRKFKDEEIDILLAT 454
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI GV+TVIN+ P L Y+HRVGRTARAGR G +V+ + +R+L+K I K
Sbjct: 455 DVAARGLDISGVKTVINFVMPATLQHYIHRVGRTARAGRGGVSVSLAGEQERTLVKKIIK 514
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
+A + +K+RI+A I K++K +E +E V ILQEE+ E+ L K E EA + E ++ +
Sbjct: 515 QAKNPVKNRIIAPDIIEKYNKKLESLESDVQKILQEEKSEKELAKVENEANRIEKILKVE 574
Query: 421 EEIFARPKRTWFVTEKEKK 439
+ + +R+WF ++KE+K
Sbjct: 575 D---GKEQRSWFQSKKERK 590
>gi|315043240|ref|XP_003170996.1| ATP-dependent RNA helicase drs1 [Arthroderma gypseum CBS 118893]
gi|311344785|gb|EFR03988.1| ATP-dependent RNA helicase drs1 [Arthroderma gypseum CBS 118893]
Length = 814
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 226/440 (51%), Positives = 316/440 (71%), Gaps = 3/440 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRP+LR ++G+S PTPIQ IP+AL G+D+ G A+TGSGKT AF +P LERLLY
Sbjct: 304 LSLSRPILRGLASVGFSAPTPIQKKTIPVALLGKDVVGGAVTGSGKTGAFIVPILERLLY 363
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RP+++P RV IL PTRELAVQ +++ K+A FTDI C +VGG S + QE L+ PD+
Sbjct: 364 RPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDV 423
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 424 IIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFAEELNEILTTIPKSRQTMLFS 483
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD+LI++ L KP+RL D + TL +E VR+R RE + L+ LC +
Sbjct: 484 ATMTNSVDKLIRVGLNKPVRLMVDSKKQTVGTLVQEFVRLRPGREDKRLGYLMFLCKTVY 543
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T++VI+F K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR V +L+ATD+
Sbjct: 544 TNRVIVFFRQKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVEDFRDAKVSYLLATDL 603
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++K K
Sbjct: 604 ASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKEAVKAG 663
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR++ KW++ + + +V +LQEE+EE+ L +AEM+ T+ +N+I H
Sbjct: 664 RAQGAKIVSRVIEPAVADKWAEQVNDLATEVEEVLQEEKEEKQLAQAEMQVTRGKNLIDH 723
Query: 420 KEEIFARPKRTWFVTEKEKK 439
+EEI +RPKRTWF +EK+K+
Sbjct: 724 QEEIMSRPKRTWFESEKDKR 743
>gi|345492254|ref|XP_001602245.2| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Nasonia
vitripennis]
Length = 787
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 221/437 (50%), Positives = 313/437 (71%), Gaps = 3/437 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+NLSRPLL+A ++ + PTPIQAA IP+AL GRDICG A TG+GKTAA+ LPTLERLLY
Sbjct: 159 MNLSRPLLKAVTSMNFVNPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLPTLERLLY 218
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RP RVL+L PTREL VQV+ + ++++QFT + L VGGL K+QE+ LR PDI
Sbjct: 219 RPLDGAVTRVLVLVPTRELGVQVYQVTKQLSQFTSVEVGLSVGGLDVKVQESVLRKNPDI 278
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V+ATPGR+IDHL N+ + LD + VLILDEADR+L+ F+ ++ +VR C + RQT+LFS
Sbjct: 279 VIATPGRLIDHLANTPTFSLDTIEVLILDEADRMLDEYFAEQMKHIVRQCARTRQTILFS 338
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+TE+V +L +SL KP+++ D + L +E +RIR+ RE ++EA+L +L +TF
Sbjct: 339 ATMTEEVKDLAAVSLDKPVKVFVDSNQDVAFNLRQEFIRIRKEREGDREAILAALICRTF 398
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
++F TK+ AHRL I+ GL +K ELHGNL+Q QRLE L F+ + +D L+ATDV
Sbjct: 399 HDHTMVFVQTKKQAHRLHIVLGLLGVKVGELHGNLSQPQRLENLRKFKDEEIDVLLATDV 458
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
AARGLDI GV+TVIN+ P L Y+HRVGRTARAGR G +V+ + +RSL+K + K+A
Sbjct: 459 AARGLDISGVKTVINFVMPATLQHYIHRVGRTARAGRGGVSVSLAGEQERSLVKEVIKQA 518
Query: 363 GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEE 422
+ +K+RI+ I K++K ++ +E+ V IL+EER++R + K E +A +AENM+ +
Sbjct: 519 KNPVKNRIIPPDIIEKYNKKLQSIEEDVENILEEERQDREIAKIENQANRAENMLKESD- 577
Query: 423 IFARPKRTWFVTEKEKK 439
++ +R+WF T+KE++
Sbjct: 578 --SKDQRSWFQTKKERQ 592
>gi|50838814|ref|NP_001002869.1| probable ATP-dependent RNA helicase DDX27 [Danio rerio]
gi|49618925|gb|AAT68047.1| DEAD box polypeptide 27 [Danio rerio]
Length = 776
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 255/610 (41%), Positives = 385/610 (63%), Gaps = 47/610 (7%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A +G+ +PTPIQ AC+P+ L G+DIC A TG+GKTAAF LP LERL+
Sbjct: 205 DMNLSRPLLKAISTMGFKQPTPIQKACVPVGLLGKDICACAATGTGKTAAFMLPVLERLI 264
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P+ RVL+L PTREL +QVH++ ++AQFT I CL VGGL K QE ALR+ PD
Sbjct: 265 YKPRETQVTRVLVLVPTRELGIQVHTVARQLAQFTTISTCLAVGGLDLKSQEAALRAGPD 324
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR+IDHL N+ S +L + +LILDEADR+L+ F ++ E++R+C +RQTMLF
Sbjct: 325 VLIATPGRLIDHLHNTPSFELSQIEILILDEADRMLDEYFEEQMKEIIRMCAYQRQTMLF 384
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++E+V +L +SL +P+R+ + + L +E VRIR +E ++EA++ +L ++T
Sbjct: 385 SATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQEFVRIRPNKEGDREAIVAALLTRT 444
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F V++F+ TK+ AHR+ IL GL LK ELHGNL+Q QRLE+L F+ + +D L+ATD
Sbjct: 445 FQDHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLESLRRFKDEQIDILVATD 504
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAG+ G +V+ V + +R +LK I K+
Sbjct: 505 VAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVSLVGETERKMLKEIVKK 564
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 421
A +K+R++ ++ I K+ +IE++E V A+L E+EE+ + +E + + A+ + E
Sbjct: 565 AKFPVKARVIPQEVILKFRDLIEKLEKDVYAVLCLEKEEKEMAHSEAQISSAQKRLTKSE 624
Query: 422 EIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRE---- 477
+ P RTWF T +E+K + + A Q DL ++ K+KR
Sbjct: 625 DEKQLP-RTWFQTNEERK----------------KDRMAKALQDFDLALRGKKKRAQFLK 667
Query: 478 --REKNLPRKERRKLEAAREMLEDEDQVDKLQGSGKDKKEKAGISMVDLAYRRAKAVKAK 535
+ K L +ER +LE + + E + + +++K+K RA+A+
Sbjct: 668 QGKRKELTAEERAQLEVLKSQMFAE------RAAKRERKQK-----------RARAIPED 710
Query: 536 Q---KALDAGKIVKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHS 592
Q KAL GKKS + +N+ K +++ + + S + +KR G KK
Sbjct: 711 QPDKKALKK--NAGKAGKKSVFDKELTNTSKKNLKQ-YRAGPSFEDRKRLGLPNKKGGR- 766
Query: 593 FKSKSRYKRR 602
FKSK+++KR+
Sbjct: 767 FKSKAKFKRK 776
>gi|209447030|ref|NP_001129273.1| probable ATP-dependent RNA helicase DDX27 [Rattus norvegicus]
gi|169642292|gb|AAI60885.1| Ddx27 protein [Rattus norvegicus]
Length = 761
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 224/439 (51%), Positives = 314/439 (71%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 188 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 247
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ RVL+L PTREL +QVHS+ +++AQF I CL VGGL K QE ALR+ PD
Sbjct: 248 YKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPD 307
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 308 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 367
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L +T
Sbjct: 368 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMRT 427
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 428 FTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 487
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K
Sbjct: 488 VAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKA 547
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+LQ E EER ++++E + A+ +++ K
Sbjct: 548 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEREVQQSEAQIDTAQRLLSKGK 607
Query: 421 EEIFARPKRTWFVTEKEKK 439
+ P+R+WF T++E+K
Sbjct: 608 QTADQEPERSWFQTKEERK 626
>gi|425770601|gb|EKV09069.1| hypothetical protein PDIP_65800 [Penicillium digitatum Pd1]
gi|425772047|gb|EKV10473.1| hypothetical protein PDIG_56240 [Penicillium digitatum PHI26]
Length = 1500
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 227/446 (50%), Positives = 309/446 (69%), Gaps = 23/446 (5%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E NLSRP+LR A+G++ PTPIQ IP+AL G+DI GSA+TGSGKTAAF +P LERLL
Sbjct: 308 EFNLSRPILRGLAAVGFTDPTPIQRKAIPVALLGKDIVGSAVTGSGKTAAFIVPILERLL 367
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+RP+++P RV++L PT + C +VGG S + QE L+ PD
Sbjct: 368 FRPRKVPTSRVVVLMPTH------------------VTFCQLVGGFSLREQENVLKKRPD 409
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLF
Sbjct: 410 VIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLF 469
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ +D+LI++ + +P+RL D STL +E VR+R RE + LL LC +
Sbjct: 470 SATMTDSIDKLIRVGMNRPMRLMVDAKKNTVSTLIQEFVRLRPGREDKRLGYLLHLCKEA 529
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+T +VIIF K+ AHR++I+FGL LKAAELHG+L+Q QR++++E FR V FL+ATD
Sbjct: 530 YTKRVIIFFRQKKEAHRVRIIFGLLGLKAAELHGSLSQEQRIKSVENFRDGKVAFLLATD 589
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++K +A R
Sbjct: 590 VASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKIVK-LAVR 648
Query: 362 A----GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 417
A G+K+ SR+V + W++ E M D+VA +LQEE+ E+ +AEM+ TK EN++
Sbjct: 649 AGKAQGAKIVSRVVEQAVADSWAQKAEDMADEVAEVLQEEKTEKQFSQAEMQFTKGENLM 708
Query: 418 AHKEEIFARPKRTWFVTEKEKKLAVK 443
H EI +RPKRTWF TEK+KK+A K
Sbjct: 709 KHGNEIMSRPKRTWFETEKDKKVARK 734
>gi|124249330|ref|NP_694705.2| probable ATP-dependent RNA helicase DDX27 [Mus musculus]
gi|341940504|sp|Q921N6.3|DDX27_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
Full=DEAD box protein 27
gi|74140985|dbj|BAE22077.1| unnamed protein product [Mus musculus]
gi|74210620|dbj|BAE23664.1| unnamed protein product [Mus musculus]
gi|148674548|gb|EDL06495.1| mCG14602, isoform CRA_c [Mus musculus]
Length = 760
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 224/439 (51%), Positives = 314/439 (71%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 188 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 247
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ RVL+L PTREL +QVHS+ +++AQF I CL VGGL K QE ALR+ PD
Sbjct: 248 YKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPD 307
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 308 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 367
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L +T
Sbjct: 368 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMRT 427
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 428 FTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 487
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K
Sbjct: 488 VAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKA 547
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE++E V A+LQ E EE+ ++++E + A+ ++A K
Sbjct: 548 AKAPVKARILPQDVILKFRDKIEKLEKDVYAVLQLEAEEKEMQQSEAQIDTAQRLLAKGK 607
Query: 421 EEIFARPKRTWFVTEKEKK 439
E P+R+WF T++E+K
Sbjct: 608 ETADQEPERSWFQTKEERK 626
>gi|395752428|ref|XP_003779421.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 isoform 2
[Pongo abelii]
Length = 796
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 225/470 (47%), Positives = 316/470 (67%), Gaps = 32/470 (6%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 191 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 250
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR+ PD
Sbjct: 251 YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPD 310
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD--------------------------- 154
I++ATPGR+IDHL N S L + VLILDEAD
Sbjct: 311 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADSPPVGTACPHAPTLWLLHLPFPQPGAI 370
Query: 155 ----RLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK 210
R+L+ F ++ E++R+C RQTMLFSAT+T++V +L +SL P+R+ + +
Sbjct: 371 SCPFRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTD 430
Query: 211 RPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKA 270
L +E +RIR RE ++EA++ +L ++TFT V++F+ TK+ AHR+ IL GL L+
Sbjct: 431 VAPFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQV 490
Query: 271 AELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHR 330
ELHGNL+Q QRLEAL F+ + +D L+ATDVAARGLDI GV+TVIN+ P + YVHR
Sbjct: 491 GELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHR 550
Query: 331 VGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQV 390
VGRTARAGR G +V+ V +++R +LK I K A + +K+RI+ + I K+ IE+ME V
Sbjct: 551 VGRTARAGRAGRSVSLVGEDERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDV 610
Query: 391 AAILQEEREERILRKAEMEATKAENMIAH-KEEIFARPKRTWFVTEKEKK 439
A+LQ E EE+ ++++E + A+ ++ KE + P+R WF T++E+K
Sbjct: 611 YAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERGWFQTKEERK 660
>gi|320588174|gb|EFX00649.1| ATP-dependent RNA helicase [Grosmannia clavigera kw1407]
Length = 1617
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 253/598 (42%), Positives = 361/598 (60%), Gaps = 56/598 (9%)
Query: 5 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP 64
SRP+LR A G+ PT IQA IP + G D+ G A+TGSGKTAAF LP LERLL+RP
Sbjct: 271 FSRPILRGIAAAGFDTPTQIQAKTIPFGIGGHDVVGQAVTGSGKTAAFLLPILERLLHRP 330
Query: 65 KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVV 124
+P RV+ILTPTRELAVQ H + K+A FT I L VGG S K E +LRS PDIV+
Sbjct: 331 TNVPKTRVVILTPTRELAVQCHKVAVKLAAFTPITMALTVGGTSFKSSEASLRSRPDIVI 390
Query: 125 ATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 184
TPGR IDH+RNS S +D + +L+LDEADR+L+ GF+ E++E+V+ P+ RQT+LFSAT
Sbjct: 391 GTPGRFIDHMRNSPSFAVDGVEILVLDEADRMLQDGFADELNEIVQTLPRGRQTLLFSAT 450
Query: 185 LTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTS 244
+ VD+LI++ L++P+R+ AD ++ TLT+ VR+R+ RE + L+ LC+ +
Sbjct: 451 MGASVDQLIRVGLSRPVRIQADDKSRTAGTLTQAFVRLRQGREDRRLGYLVELCTTLYRD 510
Query: 245 KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 304
IIF K++ H +I+FGL L ELHGN+ QA+R+ +LE FR+ V FL+A+D+A+
Sbjct: 511 HAIIFFREKRSIHEARIVFGLLGLTCEELHGNIKQAERIASLESFRRGEVQFLLASDLAS 570
Query: 305 RGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK--RA 362
RGLDI GV+TVINY P++L Y+HR+GRTARAGR G AVT V++ DR +K + K RA
Sbjct: 571 RGLDIKGVETVINYEVPKNLDDYIHRIGRTARAGRRGLAVTIVSEKDRKFVKEVVKAMRA 630
Query: 363 GS-----------------------KLKSRIVAEQSITKWSKIIEQMEDQVAAILQEERE 399
G +++S+ V + +W I+ M + VA I+ EER+
Sbjct: 631 GGDKEQKEKKGKTVGETGLPMPQQVRIRSQQVDPAAADRWQAKIDAMAEDVAEIVAEERQ 690
Query: 400 ERILRKAEMEATKAENMIAHKEEIFARPKRTWFVT--EKEKKLAVKADKASIEKGKGSGN 457
R + +AEME T+ EN++ H++EI ARPKRTWF + +KE K ++ +A E+ +
Sbjct: 691 VRAMAQAEMEVTRGENLLKHRDEIMARPKRTWFESGRDKEAKRQLQRREAQAER-----S 745
Query: 458 EVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREMLEDEDQVDKLQGSG--KDKKE 515
+ T E L+ + K K L RK+ +KL+A + D+L+G G K K+E
Sbjct: 746 DETKKSTMERLRDQLKAKHGGSGWLSRKDTKKLDAKK---------DRLEGLGGRKLKQE 796
Query: 516 KAGISMVDLAYRRAKAVKAKQKALDAGKIVKSNGKKSKHSSQESNSRAKEMRELFHSD 573
K K + A GK++K KK + + S+A+ + +D
Sbjct: 797 K-------------KELGASGNNKARGKVIKGGSKKQQIQTDWLESKARSASDSGFTD 841
>gi|397475811|ref|XP_003809313.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Pan paniscus]
Length = 605
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 225/469 (47%), Positives = 316/469 (67%), Gaps = 32/469 (6%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+Y
Sbjct: 1 MNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIY 60
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR+ PDI
Sbjct: 61 KPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDI 120
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEAD---------------------------- 154
++ATPGR+IDHL N S L + VLILDEAD
Sbjct: 121 LIATPGRLIDHLHNCPSFHLSSIEVLILDEADSPPVGTACPHAPTLWLLHLPFPQPGAIS 180
Query: 155 ---RLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKR 211
R+L+ F ++ E++R+C RQTMLFSAT+T++V +L +SL P+R+ + +
Sbjct: 181 CPFRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDV 240
Query: 212 PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAA 271
L +E +RIR RE ++EA++ +L ++TFT V++F+ TK+ AHR+ IL GL L+
Sbjct: 241 APFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVG 300
Query: 272 ELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRV 331
ELHGNL+Q QRLEAL F+ + +D L+ATDVAARGLDI GV+TVIN+ P + YVHRV
Sbjct: 301 ELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRV 360
Query: 332 GRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVA 391
GRTARAGR G +V+ V +++R +LK I K A + +K+RI+ + I K+ IE+ME V
Sbjct: 361 GRTARAGRAGRSVSLVGEDERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVY 420
Query: 392 AILQEEREERILRKAEMEATKAENMIAH-KEEIFARPKRTWFVTEKEKK 439
A+LQ E EE+ ++++E + A+ ++ KE + P+R+WF T++E+K
Sbjct: 421 AVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQTKEERK 469
>gi|169598332|ref|XP_001792589.1| hypothetical protein SNOG_01967 [Phaeosphaeria nodorum SN15]
gi|118595361|sp|Q0V1Z7.1|DRS1_PHANO RecName: Full=ATP-dependent RNA helicase DRS1
gi|111069059|gb|EAT90179.1| hypothetical protein SNOG_01967 [Phaeosphaeria nodorum SN15]
Length = 808
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 215/439 (48%), Positives = 306/439 (69%), Gaps = 3/439 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRP+ + A+G+++PTPIQA IP+A+ G+D+ G A TGSGKTAAF +P LERLLY
Sbjct: 290 MSLSRPIQKGLAAIGFTEPTPIQAKAIPIAMQGKDVVGGAETGSGKTAAFLIPILERLLY 349
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK++P RV I PTRELAVQ ++ K+A FTDI L+ GG S++ QE L++ PD+
Sbjct: 350 RPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALLAGGFSSREQEVMLKTRPDV 409
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V+ATPGR IDH+ N+ + ++ L +L+LDEADR+LE GF +++E++ PK RQTMLFS
Sbjct: 410 VIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFETQLNEILTTIPKSRQTMLFS 469
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD+LI++ + KP+RL D LT+E +R+R+ +E + A L+ +C K +
Sbjct: 470 ATMTSTVDKLIRIGMDKPVRLMVDAKKHTVKGLTQEFIRLRQGKEDKRLAYLMYICEKIY 529
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T +VIIF K+ AHR++++F L LKA+ELHGN++Q QR++A+E FR +L+ATDV
Sbjct: 530 TERVIIFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQAVEAFRSGKSSYLLATDV 589
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI V TVINY P+ Y+HRVGRTARAGR G A T + DR ++K K++
Sbjct: 590 ASRGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVKQS 649
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
GSK+ SR V + +W + + +ED++ +L+EE+EER L E + + N+I H
Sbjct: 650 RDQGSKVVSRQVPVEETDRWMEKLRGLEDEIEDVLKEEKEERTLSITERDLKRGMNLIEH 709
Query: 420 KEEIFARPKRTWFVTEKEK 438
+ EI +RPKR WF TEKEK
Sbjct: 710 EAEIKSRPKRVWFETEKEK 728
>gi|13384106|gb|AAK21271.1| RNA helicase-like protein [Homo sapiens]
Length = 561
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 215/425 (50%), Positives = 304/425 (71%), Gaps = 1/425 (0%)
Query: 16 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 75
+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+Y+P++ P RVL+L
Sbjct: 1 MGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVL 60
Query: 76 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR 135
PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR+ PDI++ATPGR+IDHL
Sbjct: 61 VPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLH 120
Query: 136 NSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 195
N S L + VLILDEADR+L+ F ++ E++R+C RQTMLFSAT+T++V +L +
Sbjct: 121 NCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASV 180
Query: 196 SLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQA 255
SL P+R+ + + L +E +RIR RE ++EA++ +L ++TFT V++F+ TK+
Sbjct: 181 SLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQ 240
Query: 256 AHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 315
AHR+ I GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATDVAARGLDI GV+TV
Sbjct: 241 AHRMHIFLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTV 300
Query: 316 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQS 375
IN+ P + YVHRVGRTARAGR G +V+ V +++R +LK I K A + +K+RI+ +
Sbjct: 301 INFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKAAKAPVKARILPQDV 360
Query: 376 ITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-KEEIFARPKRTWFVT 434
I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++ KE + P+R+WF T
Sbjct: 361 ILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQT 420
Query: 435 EKEKK 439
++E+K
Sbjct: 421 KEERK 425
>gi|322795050|gb|EFZ17898.1| hypothetical protein SINV_07122 [Solenopsis invicta]
Length = 725
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 220/417 (52%), Positives = 299/417 (71%), Gaps = 1/417 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+ + PTPIQAA IP+AL GRDICG A TG+GKTAA+ LP LERLL
Sbjct: 163 QMNLSRPLLKAITAMNFVHPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLPVLERLL 222
Query: 62 YRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
YRP PAI RVL+L PTREL VQV+ + +++AQFT + L VGGL K+QE LR P
Sbjct: 223 YRPLDGPAISRVLVLVPTRELGVQVYQVTKQLAQFTTVEVGLSVGGLDVKIQEGVLRKNP 282
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ATPGR+IDHLRN+ + LD + VLILDEADR+L+ F+ ++ +V+ C + RQT+L
Sbjct: 283 DIVIATPGRLIDHLRNAPTFSLDSIEVLILDEADRMLDEYFAEQMKYIVKQCSRTRQTIL 342
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE+V +L +SL KP+++ D + L +E +RIR+ RE ++EA+L +L +
Sbjct: 343 FSATMTEEVKDLAAVSLDKPIKIFVDSNQDVAFNLRQEFIRIRKEREGDREAILAALVCR 402
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF ++F TK+ AHRL IL GL +K ELHGNLTQ QRLE L F+ + +D L+AT
Sbjct: 403 TFHDHAMVFVQTKKQAHRLHILLGLLGVKVGELHGNLTQPQRLENLRKFKDEEIDILLAT 462
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI GV+TVIN+ P L Y+HRVGRTARAGR G +V+ + +RSL+K + K
Sbjct: 463 DVAARGLDISGVKTVINFVMPATLQHYIHRVGRTARAGRGGVSVSLAGEQERSLVKEVIK 522
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 417
+A +++K+RI+ I K++K ++ +E V ILQEE+ E+ L K E EA + E ++
Sbjct: 523 QAKNQVKNRIIPPDIIEKYNKKLQSLESDVEKILQEEKSEKELAKVENEANRVEKLL 579
>gi|390333392|ref|XP_783077.3| PREDICTED: probable ATP-dependent RNA helicase DDX27
[Strongylocentrotus purpuratus]
Length = 734
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 214/437 (48%), Positives = 309/437 (70%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E+NLSRP+LRA L +++PTPIQ+A IP+AL G+DIC A TG+GKTAAF LP +ERLL
Sbjct: 157 EMNLSRPILRAISGLNFTEPTPIQSATIPVALLGKDICACAATGTGKTAAFMLPVVERLL 216
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+PK+ P RVL++TPTREL VQ+ ++ ++ +FT+I CCL VGGL K+QE ALR PD
Sbjct: 217 YKPKQAPVTRVLVVTPTRELGVQIFNVSRQLCEFTNIECCLAVGGLDIKLQEAALRKGPD 276
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR+IDHL N+ + L + VLILDEADR+L+ F ++ E++++C RQTMLF
Sbjct: 277 IVIATPGRLIDHLHNAPTFSLSSVEVLILDEADRMLDEFFEEQMKEIIKMCSVARQTMLF 336
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ V +L +SL P+R+ + + L +E +RIR RE ++EA++ +LC +
Sbjct: 337 SATMTDQVKDLALVSLKNPVRIFVNENTDVAYNLQQEFIRIRDNREGDREAIVSALCCRN 396
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F ++F TK+ AHRL ++ GL +K ELHG+L+Q +R+E L +F++ +D L+ATD
Sbjct: 397 FHDHCMVFVQTKKQAHRLHVILGLLGIKVGELHGDLSQTKRMEMLRMFKEDLIDILVATD 456
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARGLDI GV+TVIN+ P YVHRVGRTARAGR G +V+ + +R +LK + KR
Sbjct: 457 LAARGLDIEGVKTVINFTMPNSEKHYVHRVGRTARAGRSGRSVSLAGEKERRMLKELVKR 516
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 421
A + +KSRI+ + + K+ I +E+ + +L+ EREE+ +R E++ KA M+ H
Sbjct: 517 AKNPVKSRIIPQGVVAKYRDKIASLEEDIEEVLRLEREEKEMRTTELQLQKATMMLNHHS 576
Query: 422 EIFARPKRTWFVTEKEK 438
EI +RPKR+WF + KE+
Sbjct: 577 EIMSRPKRSWFQSHKER 593
>gi|354480665|ref|XP_003502525.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Cricetulus
griseus]
Length = 788
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 222/439 (50%), Positives = 312/439 (71%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 215 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 274
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ RVL+L PTREL +QVHS+ +++AQF + CL VGGL K QE ALR+ PD
Sbjct: 275 YKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSVTTCLAVGGLDVKSQEAALRAAPD 334
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 335 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 394
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L +T
Sbjct: 395 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMRT 454
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 455 FTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 514
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K
Sbjct: 515 VAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKA 574
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+L+ E EE+ ++++E + A+ ++ K
Sbjct: 575 AKAPVKARIIPQDVILKFRDKIEKMEKDVYAVLRLEAEEKEMQQSEAQIDTAKRLLEKGK 634
Query: 421 EEIFARPKRTWFVTEKEKK 439
E P+R+WF T+ E+K
Sbjct: 635 ETADQEPERSWFQTKAERK 653
>gi|405120234|gb|AFR95005.1| ATP-dependent RNA helicase DRS1 [Cryptococcus neoformans var.
grubii H99]
Length = 813
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 252/509 (49%), Positives = 343/509 (67%), Gaps = 31/509 (6%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+NLSRPLLRA +L ++ PTPIQA IPLAL GRDI GSA+TGSGKTAAF +P LERL Y
Sbjct: 209 MNLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPILERLCY 268
Query: 63 RP--KRIPAIRVLILTPTRELAVQVHSMIEKIAQ--FTDIRCCLVVGGLSTKMQETALRS 118
R K A RVL+L PTRELAVQ ++ + +A+ D+R L+VGGLS Q LR+
Sbjct: 269 RDRGKGGAACRVLVLCPTRELAVQCEAVGKALAEKGGLDVRFALLVGGLSLNAQAHTLRT 328
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
+PDI++ATPGR+IDHL N+ S L L VL++DEADR+LE GF+ E+ E+++ CP+ RQT
Sbjct: 329 LPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEADRMLEAGFTDELEEIIKACPRSRQT 388
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
MLFSAT+T+ VDEL+KLSL KP+R+ DP LT+E VRIR + ++ LL+LC
Sbjct: 389 MLFSATMTDSVDELVKLSLDKPIRVFVDPKRNTAKGLTQEFVRIR--SDDSRSPSLLALC 446
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ-----------------AQ 281
+T K IIF +K AH+++I+FGL LKAAELHGNLTQ +Q
Sbjct: 447 KRTIREKCIIFFRSKALAHQMRIVFGLFGLKAAELHGNLTQEQGSLPSKYRIGVMLTSSQ 506
Query: 282 RLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREG 341
RL+AL F+ VD+L+ATD+A+RGLDI GV+TVINY P L Y HRVGRTARAGR+G
Sbjct: 507 RLQALNDFKAGTVDYLLATDLASRGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKG 566
Query: 342 YAVTFVTDNDRSLLKAIAKRA-GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREE 400
+++ V + DR +LKA K+A +++ RI+ +++T + +E +D + IL+EE+EE
Sbjct: 567 RSISLVGEADRKMLKAAIKQAEADQVRHRIIPSEAVTAVKEKLEGFKDDIQEILKEEKEE 626
Query: 401 RILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVT 460
++LR+A+ME K +NM+ H+ EIF+RP RTWF + KEK+ + A K + S ++ T
Sbjct: 627 KLLRQADMEIKKGQNMVEHEAEIFSRPARTWFQSGKEKQASKSAGKDAYVGSFPSKDKST 686
Query: 461 SAQQAEDLKIKEKRKREREKNLPRKERRK 489
K KEK KR + L R+ +R+
Sbjct: 687 E-------KEKEKLKRGKYDGLSRRVKRR 708
>gi|328704199|ref|XP_001943651.2| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
[Acyrthosiphon pisum]
Length = 771
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 224/451 (49%), Positives = 313/451 (69%), Gaps = 13/451 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++N+SRPL++A AL Y PTPIQAA IP+AL GRDICG A TG+GKTAA+ LP LERLL
Sbjct: 169 QMNISRPLMKAISALNYVHPTPIQAAAIPVALLGRDICGCAATGTGKTAAYMLPILERLL 228
Query: 62 YRPKRI-PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
YRPK P RVL+L PTREL VQV+ + +++AQFT + L VGGL K+QE+ LR P
Sbjct: 229 YRPKGFTPITRVLVLVPTRELGVQVYQVTKQLAQFTSVEVGLSVGGLELKVQESILRKNP 288
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D+V+ATPGR++DHL+N+ S L DL VL+LDEADR+L+ F+ ++ E++ +C + RQTML
Sbjct: 289 DVVIATPGRLLDHLQNTPSFSLADLEVLVLDEADRMLDENFADQMKEIINMCARTRQTML 348
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T+ V++L +SL+KP+++ D + L +E VR+R+ +E +++A L +L +
Sbjct: 349 FSATMTDAVNDLATVSLSKPVKIFVDSNTDVAFNLRQEFVRLRQGKEQDRDATLAALVCR 408
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF +IF TK AHR+KIL GL LKA ELHGNL+Q QRLEAL F+ + +D LIAT
Sbjct: 409 TFRDHTMIFVRTKADAHRVKILLGLFGLKAGELHGNLSQPQRLEALRQFKDEELDLLIAT 468
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI GV+ VINY P + Y+HRVGRTARAGR G +V+ ++ DR +LK + +
Sbjct: 469 DVAARGLDIRGVKAVINYTMPPTVEHYIHRVGRTARAGRSGVSVSIASEQDRKVLKEVIR 528
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENM---- 416
+A + +K+R++ + + K+ + ++ + ++V I+ EE EER + + E A K E M
Sbjct: 529 KAKNPVKNRVIPIEILDKYKERVDSLRNEVKCIMTEEYEERQMNRTEEFAEKTEKMAKTS 588
Query: 417 ----IAHKEEIFARPKRTWFVTEKEKKLAVK 443
I K+E KR WF T+KE+ A K
Sbjct: 589 IGTLIKKKDE----KKRDWFQTQKERGEAKK 615
>gi|15030137|gb|AAH11321.1| Ddx27 protein [Mus musculus]
Length = 572
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 223/438 (50%), Positives = 313/438 (71%), Gaps = 1/438 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+Y
Sbjct: 1 MNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIY 60
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+P++ RVL+L PTREL +QVHS+ +++AQF I CL VGGL K QE ALR+ PDI
Sbjct: 61 KPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDI 120
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR+IDHL N S L + VLILDEAD++L+ F ++ E++R+C RQTMLFS
Sbjct: 121 LIATPGRLIDHLHNCPSFHLSSIEVLILDEADKMLDEYFEEQMKEIIRMCSHHRQTMLFS 180
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L +TF
Sbjct: 181 ATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMRTF 240
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATDV
Sbjct: 241 TDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDV 300
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
AARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K A
Sbjct: 301 AARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAA 360
Query: 363 GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-KE 421
+ +K+RI+ + I K+ IE++E V A+LQ E EE+ ++++E + A+ ++A KE
Sbjct: 361 KAPVKARILPQDVILKFRDKIEKLEKDVYAVLQLEAEEKEMQQSEAQIDTAQRLLAKGKE 420
Query: 422 EIFARPKRTWFVTEKEKK 439
P+R+WF T++E+K
Sbjct: 421 TADQEPERSWFQTKEERK 438
>gi|223992625|ref|XP_002285996.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977311|gb|EED95637.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 495
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 237/483 (49%), Positives = 313/483 (64%), Gaps = 46/483 (9%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L LSRPLLR ++G+ PTPIQA+ +P+A+ GRD+C SA+TGSGKTAAF LP +ER+L
Sbjct: 6 QLGLSRPLLRGVASMGFVTPTPIQASVLPVAMAGRDVCASAVTGSGKTAAFLLPVMERIL 65
Query: 62 Y---------------RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGG 106
+ + A R L+LTPTRELA Q SM+ +A+FTD+R L+VGG
Sbjct: 66 QRGGGRTTMGGLNAKRKASALAATRALVLTPTRELAAQCVSMMTAMAKFTDLRAALIVGG 125
Query: 107 LSTKMQETA-LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI 165
M + A LRS PD+VVATPGR++DH+ NS VDLDDL LILDEADRLL+LGF E+
Sbjct: 126 AKNVMSQAAELRSRPDVVVATPGRLLDHITNSQGVDLDDLEFLILDEADRLLDLGFQDEV 185
Query: 166 HELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPST---------LT 216
HE+V+ CP RQT+LFSAT++ VD+LIKLSL +P+R+ A K+ + L
Sbjct: 186 HEIVKACPTERQTLLFSATMSTKVDDLIKLSLKQPVRVQATEKGKKDNAPTGVEVAPRLE 245
Query: 217 EEVVRIRRMRE-VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHG 275
+E VRIR E VN+E +LL+L ++TFTS+VI+F TK AAHRL I+ GL +K ELHG
Sbjct: 246 QEFVRIRAGNEGVNREGMLLALLTRTFTSRVIVFFDTKSAAHRLMIVCGLCGIKCTELHG 305
Query: 276 NLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTA 335
NLTQ QRLEALE FR+ +VD L+ATD+AARGLDI GV+ VIN+ P + +YVHR+GRTA
Sbjct: 306 NLTQVQRLEALEAFREGNVDVLLATDLAARGLDIPGVECVINFEMPSQVDTYVHRIGRTA 365
Query: 336 RAGREGYAVTFVTDNDRSLLKAIAKRAGSK--------------------LKSRIVAEQS 375
RAGR G + T + + R L+K + K A K ++SR +
Sbjct: 366 RAGRGGNSCTLIGEGRRYLMKEVIKDAEEKSRRASAGRKQTQDSASTSGVIRSRTIPPPV 425
Query: 376 ITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTE 435
+ + I +E V +L E RI R AEMEA +A+N+I H EI RP++ WF +
Sbjct: 426 VAHFVAKINFLEQHVREVLDAEAVARIDRIAEMEAMRAQNIIEHSSEIKQRPQKEWFASS 485
Query: 436 KEK 438
KE+
Sbjct: 486 KER 488
>gi|452845761|gb|EME47694.1| hypothetical protein DOTSEDRAFT_77927 [Dothistroma septosporum NZE10]
Length = 1056
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 227/478 (47%), Positives = 321/478 (67%), Gaps = 13/478 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+NLSRP+L+ ++G+ KPTPIQ +P+AL G+D+ G A+TGSGKTAAF +P LERLLY
Sbjct: 536 MNLSRPILKGLASVGFDKPTPIQMKAVPVALEGKDLVGGAVTGSGKTAAFLIPILERLLY 595
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPKR RV IL PTRELA+Q ++ +K++ FTDI + VGGLS K Q+ L+ PDI
Sbjct: 596 RPKRTSMTRVAILMPTRELALQCFNVAKKLSAFTDISVAMAVGGLSIKEQDKELKMRPDI 655
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V+ATPGR ID RN S+D+ + +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 656 VIATPGRFIDLERNYRSLDVGTIEILVLDEADRMLEEGFADELNEILSKIPKSRQTMLFS 715
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD+L++ L +P+RL D + S LT+E VR+R RE + L+ LC K +
Sbjct: 716 ATMTTKVDDLVRSGLQRPVRLMVDAQKQTVSGLTQEFVRLRPGREQKRLGYLMYLCEKVY 775
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T +VIIF K+ AHR++++F L LKAAELHG+++Q QR+ ++E FR +L+ATD+
Sbjct: 776 TDRVIIFFRQKKEAHRVRVIFALCGLKAAELHGSMSQEQRINSIEAFRTGKASYLLATDL 835
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI G+ TVINY P+ Y+HRVGRTARAGR G A T + DR ++KA K A
Sbjct: 836 ASRGLDIKGIDTVINYEAPQSHEIYLHRVGRTARAGRSGCACTLAAEPDRRVVKAAVKTA 895
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+ +K R + + W + +E V +++EE+EER L +A+ + T+A+N+ H
Sbjct: 896 KAQGAIIKQRTIEAHDVDAWVARLAALEQDVEDVMREEKEERALSQADRDLTRADNIAKH 955
Query: 420 KEEIFARPKRTWFVTEKEK-------KLAVKAD---KASIEKGKGSGNEVTSAQQAED 467
++EI +RPK+TWF +EK+K K+A+ + KA +KGK S E Q +D
Sbjct: 956 EDEIMSRPKKTWFESEKDKQAAKDKGKMALNGEPVVKAEKKKGKLSNKEKKRLQDKDD 1013
>gi|410931566|ref|XP_003979166.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like, partial
[Takifugu rubripes]
Length = 697
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 230/501 (45%), Positives = 333/501 (66%), Gaps = 32/501 (6%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRP+L+A ALG+ +PTPIQ AC+P+ L GRD+C A TG+GKTAAF LP LERL+
Sbjct: 187 DMNLSRPILKAITALGFKQPTPIQKACVPVGLLGRDLCACAATGTGKTAAFVLPVLERLV 246
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P+ RVL+L PTREL +QVH++ ++AQFT I CL VGGL K QE ALR+ PD
Sbjct: 247 YKPRTSQVTRVLVLVPTRELGIQVHAVTRQLAQFTSITTCLAVGGLDLKSQEVALRAGPD 306
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR+IDHL N+ S +L + +LILDEADR+L+ F ++ E++RLC RQTMLF
Sbjct: 307 VLIATPGRLIDHLHNTPSFELSHIEILILDEADRMLDEYFEEQMKEIIRLCSYNRQTMLF 366
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++E+V +L +SL +P+R+ + + L +E VRIR +E ++EAV+ +L ++T
Sbjct: 367 SATMSEEVKDLAAVSLKQPVRIFVNSNTDVAPYLRQEFVRIRPNKEGDREAVVAALLTRT 426
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F V+ F+ T++ AHRL IL GL LK ELHG L+Q QRLE L F+ + +D L+ATD
Sbjct: 427 FQDHVMCFTQTRKQAHRLHILLGLMGLKVGELHGELSQNQRLENLRRFKDEQIDILVATD 486
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK + K
Sbjct: 487 VAARGLDIDGVKTVINFTMPSTVKHYVHRVGRTARAGRSGRSVSLVGESERKILKEVVKS 546
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 421
A + +K+R++ + I K+ +I ++E V A+++ EREER E+ A++A+ +A K+
Sbjct: 547 AKTTVKARVLPAEVILKFRDLISKLEKDVEAVIKLEREER-----ELAASEAKLSVAQKK 601
Query: 422 ----EIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRE 477
+ +R WF T++E+K + ++ A Q DL ++ K+KRE
Sbjct: 602 LDGSATSTQSQRVWFQTQQERK----------------QSRLSKALQEFDLALRGKKKRE 645
Query: 478 -------REKNLPRKERRKLE 491
R+K L +ER E
Sbjct: 646 KFLKDSKRKKELTPEERAHFE 666
>gi|452986589|gb|EME86345.1| hypothetical protein MYCFIDRAFT_202484 [Pseudocercospora fijiensis
CIRAD86]
Length = 756
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 217/442 (49%), Positives = 308/442 (69%), Gaps = 3/442 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+NLSR +L+ A+G+ KPTPIQA IP+AL G+D+ G A+TGSGKTAAF +P LERLLY
Sbjct: 239 MNLSRQILKGLAAVGFDKPTPIQAKTIPVALEGKDLVGGAVTGSGKTAAFLIPILERLLY 298
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RP+ RV IL PTRELA+Q ++ +K+A TDI +GGL+++ QE L+ PDI
Sbjct: 299 RPRNAATTRVAILMPTRELALQCFNVAKKLAAHTDITFGQAIGGLNSREQEKQLKLRPDI 358
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V+ATPGR ID RNS S ++ + +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 359 VIATPGRFIDLERNSASFAVNTIEILVLDEADRMLEEGFADELNEILTKIPKSRQTMLFS 418
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD+LI++ + +P+RL D S L +E VR+R+ RE + A L+ LC + +
Sbjct: 419 ATMTSKVDDLIRVGMQRPVRLMVDAQKATVSGLVQEFVRLRQGREGKRLAYLMVLCEQIY 478
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T +VIIF K+ AHR++++F LA +KAAELHGN+TQ QR+ A+E FR FL+ATD+
Sbjct: 479 TDRVIIFFRQKKEAHRVRVIFALAGMKAAELHGNMTQEQRINAIETFRTGKASFLLATDL 538
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RG+DI G++TVINY P+ Y+HRVGRTARAGR G A T + DR ++KA K
Sbjct: 539 ASRGIDIKGIETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKAAVKAG 598
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+ +K R V + W ++ M + + +L+EE+EER L+ + + TKA+N++ +
Sbjct: 599 KAQGAVIKQRSVEASDVDAWQTRLDAMAEDIEDVLREEKEERALQAVDRDLTKADNIVKY 658
Query: 420 KEEIFARPKRTWFVTEKEKKLA 441
++EI ARPK+TWF +EK+K+ A
Sbjct: 659 EDEIKARPKKTWFESEKDKQAA 680
>gi|291409987|ref|XP_002721272.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Oryctolagus
cuniculus]
Length = 789
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 224/439 (51%), Positives = 315/439 (71%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 216 DMNLSRPLLKAISAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 275
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ +++AQF I CL VGGL K QE ALR+ PD
Sbjct: 276 YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPD 335
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L+ + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 336 ILIATPGRLIDHLHNCPSFHLNSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 395
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 396 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT 455
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHRL IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 456 FTDHVMLFTQTKKQAHRLHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDVLVATD 515
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TV+N+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K
Sbjct: 516 VAARGLDIEGVKTVVNFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKA 575
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I ++ IE ME V A+LQ E EE+ ++++E + A+ ++ K
Sbjct: 576 AKAPVKARILPQDVILRFRDKIEAMEKDVYAVLQLEAEEKAMQQSEAQINTAKRLLEKGK 635
Query: 421 EEIFARPKRTWFVTEKEKK 439
E P+R+WF T++E+K
Sbjct: 636 EAPGQEPERSWFQTKEERK 654
>gi|432859445|ref|XP_004069111.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Oryzias
latipes]
Length = 771
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 227/500 (45%), Positives = 332/500 (66%), Gaps = 31/500 (6%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRP+L+A ALG+ +PTPIQ AC+P++L GRD+C A TG+GKTAAF LP LERL+
Sbjct: 202 DMNLSRPILKAITALGFKQPTPIQKACVPVSLLGRDLCACAATGTGKTAAFMLPVLERLI 261
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P+ RVL+L PTREL +QVHS+ ++AQFT I CL VGGL K QE ALR+ PD
Sbjct: 262 YKPRTSQVTRVLVLVPTRELGIQVHSVARQLAQFTSITTCLAVGGLDLKSQEAALRAGPD 321
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR+IDHL N+ + +L + +LILDEADR+L+ F ++ E++RLC RQTMLF
Sbjct: 322 VLIATPGRLIDHLHNTPNFELSHIEILILDEADRMLDEYFEEQMKEIIRLCSYNRQTMLF 381
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+TE+V +L +SL +P+R+ + + L +E +RIR RE ++EAV+ +L ++T
Sbjct: 382 SATMTEEVKDLAAVSLKQPVRIFVNSNTDVAPFLRQEFIRIRPHREGDREAVVAALLTRT 441
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F V++F+ T++ AHRL IL GL LK ELHG L+Q QRLE L F+ +D L+ATD
Sbjct: 442 FQDHVMLFTQTRKQAHRLHILLGLMGLKVGELHGELSQNQRLENLRRFKDDQIDILVATD 501
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK + K
Sbjct: 502 VAARGLDIDGVKTVINFTMPSTVKHYVHRVGRTARAGRSGRSVSLVGESERRILKEVVKS 561
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK- 420
A + +K+R++ + K+ +I ++E V A+++ E+EER E+ A++A+ +A K
Sbjct: 562 AKNSVKARVLPPDVVLKFRDLICKLEKDVEAVMRLEKEER-----ELAASEAKLSVAQKR 616
Query: 421 ---EEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRE 477
+ +R WF T++E+K + V+ A Q D ++ K+KR+
Sbjct: 617 LDGSASSSESQRVWFQTQQERK----------------QSRVSKALQEFDFALRGKKKRD 660
Query: 478 ------REKNLPRKERRKLE 491
++K L +ER + E
Sbjct: 661 KFVKDAKKKELSSEERAQFE 680
>gi|189208750|ref|XP_001940708.1| ATP-dependent RNA helicase DRS1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976801|gb|EDU43427.1| ATP-dependent RNA helicase DRS1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 805
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 215/439 (48%), Positives = 312/439 (71%), Gaps = 3/439 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRP+LR ++G+++PTPIQ +P+A+ G+D+ G A TGSGKTAAF +P LERLLY
Sbjct: 280 MSLSRPILRGLASVGFTEPTPIQNKAVPIAMQGKDVVGGAETGSGKTAAFLIPILERLLY 339
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK++P RV I PTRELAVQ ++ K+A FTDI L+ GG ST+ QE L++ PD+
Sbjct: 340 RPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSTRDQEAVLKTRPDV 399
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V+ATPGR IDH+ N+ + ++ L +L+LDEADR+LE GF ++++E++ PK RQTMLFS
Sbjct: 400 VIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFESQLNEILTTIPKSRQTMLFS 459
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD+LI++ + KP+RL D + LT+E VR+R+ +E + A L+ +C K +
Sbjct: 460 ATMTSSVDKLIRIGMDKPVRLMVDAKKHTVAGLTQEFVRLRQGKEDKRLAYLMYICEKIY 519
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T KVI+F K+ AHR++++F L LKA+ELHGN++Q QR++++E FR +L+ATDV
Sbjct: 520 TEKVIVFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQSVEAFRSGKSAYLLATDV 579
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI V TVINY P+ Y+HRVGRTARAGR G A T + DR ++K K +
Sbjct: 580 ASRGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVKAS 639
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR V + +W K I+ +ED++ +L+EE+EER+L E + + EN+I H
Sbjct: 640 RDQGAKVVSRQVPIEETDRWMKKIKDLEDEIEEVLKEEKEERLLSVTERDLKRGENLITH 699
Query: 420 KEEIFARPKRTWFVTEKEK 438
++EI +RP+RTWF +EK+K
Sbjct: 700 EDEIKSRPRRTWFESEKDK 718
>gi|330915742|ref|XP_003297149.1| hypothetical protein PTT_07463 [Pyrenophora teres f. teres 0-1]
gi|311330325|gb|EFQ94748.1| hypothetical protein PTT_07463 [Pyrenophora teres f. teres 0-1]
Length = 805
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 215/439 (48%), Positives = 312/439 (71%), Gaps = 3/439 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRP+LR ++G+++PTPIQ +P+A+ G+D+ G A TGSGKTAAF +P LERLLY
Sbjct: 280 MSLSRPILRGLASVGFTEPTPIQNKAVPIAMQGKDVVGGAETGSGKTAAFLIPILERLLY 339
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK++P RV I PTRELAVQ ++ K+A FTDI L+ GG ST+ QE L++ PD+
Sbjct: 340 RPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSTRDQEAVLKTRPDV 399
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V+ATPGR IDH+ N+ + ++ L +L+LDEADR+LE GF ++++E++ PK RQTMLFS
Sbjct: 400 VIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFESQLNEILTTIPKSRQTMLFS 459
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD+LI++ + KP+RL D + LT+E VR+R+ +E + A L+ +C K +
Sbjct: 460 ATMTSSVDKLIRIGMDKPVRLMVDAKKHTVAGLTQEFVRLRQGKEDKRLAYLMYICEKIY 519
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T KVI+F K+ AHR++++F L LKA+ELHGN++Q QR++++E FR +L+ATDV
Sbjct: 520 TEKVIVFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQSVEAFRSGKSAYLLATDV 579
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI V TVINY P+ Y+HRVGRTARAGR G A T + DR ++K K +
Sbjct: 580 ASRGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVKAS 639
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR V + +W K I+ +ED++ +L+EE+EER+L E + + EN+I H
Sbjct: 640 RDQGAKVVSRQVPIEETDRWMKKIKDLEDEIEEVLKEEKEERLLSVTERDLKRGENLITH 699
Query: 420 KEEIFARPKRTWFVTEKEK 438
++EI +RP+RTWF +EK+K
Sbjct: 700 EDEIKSRPRRTWFESEKDK 718
>gi|452823641|gb|EME30650.1| ATP-dependent RNA helicase DEAD [Galdieria sulphuraria]
Length = 558
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 217/435 (49%), Positives = 302/435 (69%), Gaps = 3/435 (0%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
++L +SRPLL A LG+ PTPIQ IPLAL GRDIC SA+TGSGKT AFA+P LE+L
Sbjct: 102 LQLGISRPLLVAIRQLGWEVPTPIQDKVIPLALVGRDICASAVTGSGKTGAFAVPILEKL 161
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
++ +RV+++ PTRELA+Q + ++++ DI L +GGL+ + ++ AL+ P
Sbjct: 162 WRSASKVSLVRVIVILPTRELALQCKQVFTELSKNMDIDIELAIGGLAVRAEQDALQRCP 221
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ TPGR+IDH+RN+ +DD+ +++LDEADRLL+LGFS E+ E++R C +RQT+L
Sbjct: 222 DIVIGTPGRIIDHIRNTKGFSVDDVEIVVLDEADRLLDLGFSEELEEIIRSCSPKRQTLL 281
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE-AVLLSLCS 239
FSAT+T V +L LSL +P + DP + TL +E V I VN+ + LL+LC
Sbjct: 282 FSATMTTSVQQLALLSLKEPANIVVDPLYEVSKTLEQEFVLISDGNNVNKRISYLLALCC 341
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+T+T +VI+F + AH++ I+FG+ L A ELHGNL+Q QR+EAL FRK +FL+
Sbjct: 342 RTYTQRVILFFSKRSVAHQIFIIFGMLGLSAVELHGNLSQMQRMEALNRFRKGQCEFLLC 401
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLLKA 357
TDVA+RGLDI V+TVINY P D+ +YVHRVGRTARAG +G AVT V T + R LL
Sbjct: 402 TDVASRGLDIFDVRTVINYEMPNDIRTYVHRVGRTARAGAKGKAVTLVDETSHARRLLSV 461
Query: 358 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 417
I KR+ + LKSR + + + K+ +I+ + Q+ LQ+ER E+ + AEMEA KA+N+I
Sbjct: 462 IQKRSKTTLKSRSITDSVLDKYLEILFSKQGQIKEQLQKERHEKEIEMAEMEAKKAQNLI 521
Query: 418 AHKEEIFARPKRTWF 432
H +EI+ARPKRTWF
Sbjct: 522 DHADEIYARPKRTWF 536
>gi|194757571|ref|XP_001961038.1| GF13667 [Drosophila ananassae]
gi|190622336|gb|EDV37860.1| GF13667 [Drosophila ananassae]
Length = 782
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 227/464 (48%), Positives = 316/464 (68%), Gaps = 13/464 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPL+RA LGY PTPIQA+ IP+AL GRDICG A TG+GKTAA+ LPTLERLL
Sbjct: 161 QMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLL 220
Query: 62 YRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
YRP AI RVL+L PTREL QV+ + +++ QFT I L +GGL K QE LR P
Sbjct: 221 YRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQNP 280
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ATPGR+IDH++N+ S LD + VLILDEADR+L+ F+ ++ E++ C K RQTML
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT++E V +L +SL KP+++ + + + L +E +RIR +E ++E +L SL +
Sbjct: 341 FSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICR 400
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF ++F TK+ AHRL IL GL ++A ELHGNLTQ QRLE+L+ F+++ +D LIAT
Sbjct: 401 TFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIAT 460
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI+GV+TVIN+ P Y+HRVGRTARAGR G +V+ + +R ++K I K
Sbjct: 461 DVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIK 520
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
A S +K+RI+ + I K+ + +E ++ IL+EE+ ER L K E + +K E + +
Sbjct: 521 NAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNILEEEQAERQLAKTEQQLSKTERKLLGQ 580
Query: 421 EEIFARPKRTWFVTEKEK-----KLAVKA---DKASIEKGKGSG 456
+ +R WF T+K++ +LA+ +K + KGKG G
Sbjct: 581 ----SNERRGWFQTKKQREDEKARLALTPADEEKPAGPKGKGKG 620
>gi|378728301|gb|EHY54760.1| adenosinetriphosphatase [Exophiala dermatitidis NIH/UT8656]
Length = 813
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 227/443 (51%), Positives = 311/443 (70%), Gaps = 3/443 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ +LSRP+L+A AL ++ PTPIQA IP+AL G D+ GSA+TGSGKTAAF LP LERLL
Sbjct: 290 QFSLSRPILKALAALSFTAPTPIQARAIPVALQGLDVVGSAVTGSGKTAAFLLPILERLL 349
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
YRP+++P RV IL PTRELAVQ +++ +A+FTDI VVGG + QE L+ PD
Sbjct: 350 YRPRKVPTTRVAILMPTRELAVQCYNVATALARFTDITFAQVVGGFPLREQEAILKKRPD 409
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+V+ATPGR IDH+RNS S ++++ +L+LDEADR+LE GF E++E+++ PK RQTMLF
Sbjct: 410 VVIATPGRFIDHMRNSASFVVENIEILVLDEADRMLETGFEDELNEILKTIPKGRQTMLF 469
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ VD+L+++ + +P+RLS D S L +E VR+R RE + A L LC
Sbjct: 470 SATMTDSVDKLVRVGMNRPVRLSVDAKKSTVSGLVQEFVRLRPGRENLRLATLCVLCKNF 529
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT + IIF K+ AHR++I+FGL LKA ELHG+++Q QR+ A+ FR+ L+ATD
Sbjct: 530 FTERTIIFFRQKKEAHRVRIVFGLLGLKAGELHGSMSQEQRISAVNAFREGKTTHLLATD 589
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+A+RGLDI V TV+NY P+ Y+HRVGRTARAGR G A T + DR +++A K
Sbjct: 590 LASRGLDIKNVMTVVNYEAPQTHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVRAAVKS 649
Query: 362 A---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 418
A G+K+ SR+V Q + + IE ME ++ IL+EE+EE+ L + E + T+ EN++
Sbjct: 650 ARQQGAKVVSRVVDAQEVDAMNAQIEAMESEIEEILKEEKEEKQLSQVEQQLTRGENLVK 709
Query: 419 HKEEIFARPKRTWFVTEKEKKLA 441
H+ EI ARPKRTWF TEKEK+ A
Sbjct: 710 HEAEIMARPKRTWFETEKEKQQA 732
>gi|219122480|ref|XP_002181572.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406848|gb|EEC46786.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 467
Score = 447 bits (1149), Expect = e-122, Method: Compositional matrix adjust.
Identities = 238/465 (51%), Positives = 309/465 (66%), Gaps = 29/465 (6%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L+LSRPLLR A+G+ KPTPIQAA IPLAL GRDIC SA+TGSGKTAAF LP LERLL
Sbjct: 3 QLSLSRPLLRGVAAMGFVKPTPIQAAVIPLALAGRDICASAVTGSGKTAAFLLPILERLL 62
Query: 62 YR-PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGL-STKMQETALRSM 119
+R R AI ILTPTRELA Q M+ AQFT++R L+VGG + Q LRS
Sbjct: 63 HRYSGRTKAI---ILTPTRELAAQCLGMLTSFAQFTNLRASLIVGGAKNVNAQAAELRSR 119
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
PD++VATPGR++DH+ NS V L+D+ +L+LDEADRLL+LGF E+HELV+ CP +RQT+
Sbjct: 120 PDVIVATPGRLLDHITNSAGVTLEDIEILVLDEADRLLDLGFQDEVHELVKACPVQRQTL 179
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPST-----LTEEVVRIRRMRE-VNQEAV 233
LFSAT+ VD+LI+LS+ +P+R+ A L +E VR+R E N+E +
Sbjct: 180 LFSATMNTKVDDLIQLSMKRPVRVRISDKANSMDIEVAPRLEQEFVRVRAGNEGANREGM 239
Query: 234 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 293
LL+L ++TF + I+F TK AAHRL IL GL +K AELHGNL+Q QRL ALE FRK
Sbjct: 240 LLALLTRTFKKQTIVFFDTKAAAHRLMILCGLCGIKCAELHGNLSQQQRLTALEEFRKGD 299
Query: 294 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 353
VD L+ATD+AARGLDI V+TVIN+ P + +YVHR+GRTARAGR G + T + + R
Sbjct: 300 VDVLLATDLAARGLDIDRVKTVINFEMPSQVATYVHRIGRTARAGRGGRSCTLIGEGRRH 359
Query: 354 LLKAIAKRAGSK------------------LKSRIVAEQSITKWSKIIEQMEDQVAAILQ 395
L+K + K A K ++SR + + + I+ +E V + Q
Sbjct: 360 LMKELIKDAEVKNKRHTTGDTAKSSFESGVIRSRTIPPAVMGHFVAKIQSLETHVDEVFQ 419
Query: 396 EEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKL 440
E ++ R AEME KA+N+I H +EI ARP+R WF +EK+KKL
Sbjct: 420 AEAIAKMDRLAEMEVIKAQNIIQHSDEIKARPQREWFASEKQKKL 464
>gi|195381768|ref|XP_002049617.1| GJ21693 [Drosophila virilis]
gi|194144414|gb|EDW60810.1| GJ21693 [Drosophila virilis]
Length = 784
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/441 (49%), Positives = 307/441 (69%), Gaps = 9/441 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPL+RA LGY PTPIQA+ IP+AL GRDICG A TG+GKTAA+ LPT+ERLL
Sbjct: 161 QMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTVERLL 220
Query: 62 YRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
YRP AI RVL+L PTREL QV+ + +++ QFT I L +GGL K QET LR P
Sbjct: 221 YRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQETVLRQNP 280
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ATPGR+IDH++N+ S LD + VLILDEADR+L+ F+ ++ E++ C K RQTML
Sbjct: 281 DIVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT++E V +L +SL KP+++ + + + L +E +RIR +E ++E +L SL +
Sbjct: 341 FSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICR 400
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF ++F TK+ AHRL IL GL ++A ELHGNLTQ QRLE+L+ F+++ +D LIAT
Sbjct: 401 TFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIAT 460
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI+GV+TVIN+ P Y+HRVGRTARAGR G +V+ + +R ++K I K
Sbjct: 461 DVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIK 520
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
A S +K+RI+ + I K+ + +E ++ IL EE+ ER L K E + +K E
Sbjct: 521 NAESSVKNRIIPPEIIEKYRNKLTALEPEIQNILDEEQAERQLAKTEQQLSKTE------ 574
Query: 421 EEIFARP--KRTWFVTEKEKK 439
++ +P +RTWF T+++++
Sbjct: 575 RKLLGQPNERRTWFQTKQQRE 595
>gi|260798638|ref|XP_002594307.1| hypothetical protein BRAFLDRAFT_275600 [Branchiostoma floridae]
gi|229279540|gb|EEN50318.1| hypothetical protein BRAFLDRAFT_275600 [Branchiostoma floridae]
Length = 563
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 258/602 (42%), Positives = 370/602 (61%), Gaps = 41/602 (6%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+NLSRPL++A + + PTPIQ A IP+AL G+D+C A TG+GKTAAF LP LERLLY
Sbjct: 1 MNLSRPLVKAISQMKFHHPTPIQKATIPVALLGKDVCACAATGTGKTAAFMLPVLERLLY 60
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+P++ P RVL+L PTRELAVQVH + ++AQFT + L GGL + QE ALR PD+
Sbjct: 61 KPRQAPVTRVLVLAPTRELAVQVHQVSRQLAQFTSVEISLAAGGLDIRTQEAALRLGPDV 120
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V+ATPGR+IDHL N+ S DL + VLILDEADR+L+ F +++E++RLC ++RQTMLFS
Sbjct: 121 VIATPGRLIDHLHNTPSFDLKSIEVLILDEADRMLDEFFEEQMNEIIRLCARKRQTMLFS 180
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+++ V +L +SL P++L + + L +E +RIR RE ++EA++ ++TF
Sbjct: 181 ATMSDQVKDLAAVSLENPVKLFVNENTDVAFNLRQEFIRIRPNREGDREAII---AARTF 237
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
I+F TK AHR+ I+ GL L ELHGNL+Q QRLE L+ F+ VD L+ATD+
Sbjct: 238 HDHCIVFIQTKLQAHRMHIILGLLGLNVGELHGNLSQTQRLETLKRFKDAEVDVLLATDL 297
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
AARGLDI GV+TVIN+ P L Y+HRVGRTARAG+ G AVT V + +R LK + K A
Sbjct: 298 AARGLDIQGVKTVINFTMPSTLKHYIHRVGRTARAGKSGRAVTLVGEKERRYLKDVVKNA 357
Query: 363 GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEE 422
+ +KSR+V ++ I K+ IE+ME VA IL+ E EE+ + E + +A+NM+ +
Sbjct: 358 RNPVKSRVVPQEVILKYRDKIEKMEKDVAEILRLEAEEKEMASTENKMNRAQNMLNSPDN 417
Query: 423 IFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNL 482
+ A+ KR WF T KE+ EK + + E + + + +K L
Sbjct: 418 M-AQQKRGWFQTHKER---------MEEKARLALGEPIAKGKKKGKHVKSA-------PL 460
Query: 483 PRKERRKLEAAREMLEDEDQVDKLQGSGKDKKEKAGISMVDLAYRRAKAVKAKQK-ALDA 541
++R +LE + Q L+ + + +K K R KA K++ A A
Sbjct: 461 NAEDRVQLEMQKA------QDFALRQAKRARKPK-----------RIKAFYEKEEGAKPA 503
Query: 542 GKIVKSN-GKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHSFKSKSRYK 600
K+ K N G KS + ++ K +++ F + S + +KR G + K K +FKSK+R+K
Sbjct: 504 KKMKKQNTGPKSTFDKELVDTSRKALKK-FRAGPSYEDRKRLG-MSMKSKGNFKSKNRFK 561
Query: 601 RR 602
RR
Sbjct: 562 RR 563
>gi|195123476|ref|XP_002006232.1| GI18677 [Drosophila mojavensis]
gi|193911300|gb|EDW10167.1| GI18677 [Drosophila mojavensis]
Length = 787
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/441 (49%), Positives = 307/441 (69%), Gaps = 9/441 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPL+RA LGY PTPIQA+ IP+AL GRDICG A TG+GKTAA+ LPT+ERLL
Sbjct: 161 QMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTVERLL 220
Query: 62 YRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
YRP AI RVL+L PTREL QV+ + +++ QFT I L +GGL K QET LR P
Sbjct: 221 YRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIEVGLAIGGLDVKAQETVLRQNP 280
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ATPGR+IDH++N+ S LD + VLILDEADR+L+ F+ ++ E++ C K RQTML
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT++E V +L +SL KP+++ + + + L +E +RIR +E ++E +L SL +
Sbjct: 341 FSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICR 400
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF ++F TK+ AHRL IL GL ++A ELHGNLTQ QRLE+L+ F+++ +D LIAT
Sbjct: 401 TFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIAT 460
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI+GV+TVIN+ P Y+HRVGRTARAGR G +V+ + +R ++K I K
Sbjct: 461 DVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIK 520
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
A S +K+RI+ + I K+ + +E ++ IL EE+ ER L K E + +K E
Sbjct: 521 NAESSVKNRIIPPEIIEKYRNKLTALEPEIQNILDEEQAERQLAKTEQQLSKTE------ 574
Query: 421 EEIFARP--KRTWFVTEKEKK 439
++ +P +RTWF T+++++
Sbjct: 575 RKLLGQPNERRTWFQTKQQRE 595
>gi|451852848|gb|EMD66142.1| hypothetical protein COCSADRAFT_179496 [Cochliobolus sativus
ND90Pr]
Length = 814
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/439 (49%), Positives = 311/439 (70%), Gaps = 3/439 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRP+LR ++G+++PTPIQ+ +P+A+ G+D+ G A TGSGKTAAF +P LERLLY
Sbjct: 293 MSLSRPILRGLASVGFTEPTPIQSKAVPIAMQGKDVVGGAETGSGKTAAFLIPILERLLY 352
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
R K+IP RV I PTRELAVQ ++ K+A FTDI L+ GG S++ QE L++ PD+
Sbjct: 353 RQKKIPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSSREQEAVLKTRPDV 412
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V+ATPGR IDH+ N+ + +++L +L+LDEADR+LE GF ++++E++ PK RQTMLFS
Sbjct: 413 VIATPGRFIDHMHNTAAFQVENLEILVLDEADRMLEEGFESQLNEILTTIPKSRQTMLFS 472
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD+LI++ + KP+RL D + LT+E VR+R+ +E + A L+ +C K +
Sbjct: 473 ATMTSSVDKLIRIGMDKPVRLMVDAKKQTVKGLTQEFVRLRQGKEDKRLAYLMYICEKIY 532
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T KVI+F K+ AHR++++F L LKA+ELHGN++Q QR++A+E FR +L+ATDV
Sbjct: 533 TEKVIVFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQAVEAFRSGKSSYLLATDV 592
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI V TVINY P+ Y+HRVGRTARAGR G A T + DR ++K K +
Sbjct: 593 ASRGLDIKNVSTVINYEAPQTHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVKAS 652
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR V + +W K I+ ME ++ +L+EE+EER + E + + EN+I H
Sbjct: 653 REQGAKVVSRQVPVEETERWMKKIKSMEKEIEEVLEEEKEERAMTVTERDLKRGENLIVH 712
Query: 420 KEEIFARPKRTWFVTEKEK 438
++EI ARP+RTWF TEKEK
Sbjct: 713 EDEIKARPRRTWFETEKEK 731
>gi|195024659|ref|XP_001985916.1| GH21077 [Drosophila grimshawi]
gi|193901916|gb|EDW00783.1| GH21077 [Drosophila grimshawi]
Length = 790
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 219/441 (49%), Positives = 306/441 (69%), Gaps = 9/441 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPL+RA LGY PTPIQA+ IP+AL GRDICG A TG+GKTAA+ LPT+ERLL
Sbjct: 162 QMNLSRPLMRAIGVLGYIYPTPIQASTIPIALLGRDICGCAATGTGKTAAYMLPTVERLL 221
Query: 62 YRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
YRP AI RVL+L PTREL QV+ + +++ QFT I L +GGL K QE LR P
Sbjct: 222 YRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQNP 281
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ATPGR+IDH++N+ S LD + VLILDEADR+L+ F+ ++ E++ C K RQTML
Sbjct: 282 DIVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 341
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT++E V +L +SL KP+++ + + + L +E +RIR +E ++E +L SL +
Sbjct: 342 FSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICR 401
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF ++F TK+ AHRL IL GL ++A ELHGNLTQ QRLE+L+ F+++ +D LIAT
Sbjct: 402 TFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIAT 461
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI+GV+TVIN+ P Y+HRVGRTARAGR G +V+ + +R ++K I K
Sbjct: 462 DVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIK 521
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
A S +K+RI+ + I K+ + +E ++ IL EE+ ER L K E + +K E
Sbjct: 522 NAESSVKNRIIPPEIIDKYRNKLTALEPEIQNILDEEQAERQLAKTEQQLSKTE------ 575
Query: 421 EEIFARP--KRTWFVTEKEKK 439
++ +P +RTWF T+++++
Sbjct: 576 RKLLGQPNERRTWFQTKQQRE 596
>gi|195332387|ref|XP_002032880.1| GM21012 [Drosophila sechellia]
gi|194124850|gb|EDW46893.1| GM21012 [Drosophila sechellia]
Length = 782
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 219/440 (49%), Positives = 305/440 (69%), Gaps = 7/440 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPL+RA LGY+ PTPIQA+ IP+AL GRDICG A TG+GKTAA+ LPTLERLL
Sbjct: 161 QMNLSRPLMRAIGVLGYTYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLL 220
Query: 62 YRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
YRP AI RVL+L PTREL QV+ + +++ QFT I L +GGL K QE LR P
Sbjct: 221 YRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQNP 280
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ATPGR+IDH++N+ S LD + VLILDEADR+L+ F+ ++ E++ C K RQTML
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT++E V +L +SL KP+++ + + + L +E +RIR +E ++E +L SL +
Sbjct: 341 FSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICR 400
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF ++F TK+ AHRL IL GL ++A ELHGNLTQ QRLE+L+ F+++ +D LIAT
Sbjct: 401 TFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIAT 460
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI+GV+TVIN+ P Y+HRVGRTARAGR G +V+ + +R ++K I K
Sbjct: 461 DVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIK 520
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAE-NMIAH 419
A S +K+RI+ + I K+ + +E ++ IL EE+ ER L K E + +K E ++
Sbjct: 521 NAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNILDEEQAERQLAKTEQQLSKTERKLLGQ 580
Query: 420 KEEIFARPKRTWFVTEKEKK 439
E +R WF T+++++
Sbjct: 581 TNE-----RRGWFQTKQQRE 595
>gi|195581486|ref|XP_002080565.1| GD10546 [Drosophila simulans]
gi|194192574|gb|EDX06150.1| GD10546 [Drosophila simulans]
Length = 782
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 219/440 (49%), Positives = 305/440 (69%), Gaps = 7/440 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPL+RA LGY+ PTPIQA+ IP+AL GRDICG A TG+GKTAA+ LPTLERLL
Sbjct: 161 QMNLSRPLMRAIGVLGYTYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLL 220
Query: 62 YRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
YRP AI RVL+L PTREL QV+ + +++ QFT I L +GGL K QE LR P
Sbjct: 221 YRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQNP 280
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ATPGR+IDH++N+ S LD + VLILDEADR+L+ F+ ++ E++ C K RQTML
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT++E V +L +SL KP+++ + + + L +E +RIR +E ++E +L SL +
Sbjct: 341 FSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICR 400
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF ++F TK+ AHRL IL GL ++A ELHGNLTQ QRLE+L+ F+++ +D LIAT
Sbjct: 401 TFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIAT 460
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI+GV+TVIN+ P Y+HRVGRTARAGR G +V+ + +R ++K I K
Sbjct: 461 DVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIK 520
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAE-NMIAH 419
A S +K+RI+ + I K+ + +E ++ IL EE+ ER L K E + +K E ++
Sbjct: 521 NAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNILDEEQAERQLAKTEQQLSKTERKLLGQ 580
Query: 420 KEEIFARPKRTWFVTEKEKK 439
E +R WF T+++++
Sbjct: 581 TNE-----RRGWFQTKQQRE 595
>gi|398407733|ref|XP_003855332.1| hypothetical protein MYCGRDRAFT_99289 [Zymoseptoria tritici IPO323]
gi|339475216|gb|EGP90308.1| hypothetical protein MYCGRDRAFT_99289 [Zymoseptoria tritici IPO323]
Length = 740
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/440 (48%), Positives = 308/440 (70%), Gaps = 3/440 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+NLSRP+L+ A+G++ PTPIQA IP+AL G+D+ G A+TGSGKT AF +P LERLL+
Sbjct: 231 MNLSRPILKGLAAVGFNTPTPIQAKTIPVALEGKDLVGGAVTGSGKTGAFLIPILERLLF 290
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPKR RV+IL PTRELA+Q ++ +K+A FTDI +GGL+++ QE L+ PDI
Sbjct: 291 RPKRTATTRVVILMPTRELALQCFAVAKKLASFTDITFGQAIGGLNSREQEKQLKLRPDI 350
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V+ATPGR ID RNS S + + +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 351 VIATPGRFIDLERNSASFTVSTVEILVLDEADRMLEEGFADELNEILNKIPKSRQTMLFS 410
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD+LI++ L +P+RL D + S L +E VR+R RE + A L++L +
Sbjct: 411 ATMTSKVDDLIRVGLQRPVRLLVDAQRQTVSGLVQEFVRLRPGRESKRLAYLMNLAESVY 470
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T +VIIF K+ AHR++++F L L AAELHG+++Q QR+ A+E FR ++L+ATD+
Sbjct: 471 TDRVIIFFRQKKEAHRVRVIFALCGLNAAELHGSMSQEQRINAIESFRTGKANYLLATDL 530
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI G++TVINY P+ Y+HRVGRTARAGR G + T + DR ++KA K
Sbjct: 531 ASRGLDIKGIETVINYEAPQSHEIYLHRVGRTARAGRTGRSCTLAAEPDRKVVKAAVKSG 590
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+ +K R + + W +E +E +V +L+EE+EE+ L++ + + TKA+N++ +
Sbjct: 591 KAQGAVIKQRTIDPSDVDAWQTRLEALESEVEDVLREEKEEKALQQVDRDLTKADNIVKY 650
Query: 420 KEEIFARPKRTWFVTEKEKK 439
+ EI ARP++TWF +EK+K+
Sbjct: 651 EAEIKARPRKTWFESEKDKQ 670
>gi|408399032|gb|EKJ78157.1| hypothetical protein FPSE_01618 [Fusarium pseudograminearum CS3096]
Length = 793
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 224/440 (50%), Positives = 308/440 (70%), Gaps = 3/440 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRP++R ++G++KPTPIQA IP+AL G+D+ G A TGSGKT AF LP LERLLY
Sbjct: 262 MSLSRPIMRGLASVGFTKPTPIQAKSIPIALMGKDVVGGAETGSGKTGAFILPILERLLY 321
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK+IP RV++L PTRELA+Q H++ K+A FTDI+ L VGGLS K QE L+ PD+
Sbjct: 322 RPKKIPTTRVVVLLPTRELAIQCHAVATKLAAFTDIKFTLAVGGLSLKAQELELKLRPDV 381
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D + +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 382 IIATPGRFIDHMRNSASFSVDTVEILVLDEADRMLEDGFAEELNEILTTLPKSRQTMLFS 441
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD LI + L +P R+ + K +TL +E VR+R RE + L +C +
Sbjct: 442 ATMTSSVDRLISIGLNRPARVMVNSQKKTVTTLVQEFVRLRPGREDKRMGYLAHVCKNLY 501
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+VIIF K+ AHR +I+FGL L AELHG++ Q QR+ ++E FR V +L+ATD+
Sbjct: 502 KERVIIFFRQKKDAHRARIIFGLLGLSCAELHGSMNQTQRISSVEDFRDGKVAYLLATDL 561
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV TVINY P+ L YVHRVGRTARAGR+G A+T ++DR ++KA K
Sbjct: 562 ASRGLDIKGVDTVINYEAPQSLDIYVHRVGRTARAGRKGVALTIAAESDRKVVKAAVKAG 621
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR + + + I++M+D++ I++EE+EE+ L EM+ K ENMI H
Sbjct: 622 KAQGAKIVSRQLDSGEVDAFQTQIDEMDDEIDEIMEEEKEEKQLAHVEMQVKKGENMIQH 681
Query: 420 KEEIFARPKRTWFVTEKEKK 439
+ EI RP+RTWF +E +KK
Sbjct: 682 EAEIKGRPRRTWFESEHDKK 701
>gi|452002395|gb|EMD94853.1| hypothetical protein COCHEDRAFT_1128751 [Cochliobolus
heterostrophus C5]
Length = 815
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/439 (49%), Positives = 311/439 (70%), Gaps = 3/439 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRP+LR ++G+++PTPIQ+ +P+A+ G+D+ G A TGSGKTAAF +P LERLLY
Sbjct: 294 MSLSRPILRGLASVGFTEPTPIQSKAVPIAMQGKDVVGGAETGSGKTAAFLIPILERLLY 353
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
R K+IP RV I PTRELAVQ ++ K+A FTDI L+ GG S++ QE L++ PD+
Sbjct: 354 RQKKIPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSSREQEAVLKTRPDV 413
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V+ATPGR IDH+ N+ + +++L +L+LDEADR+LE GF ++++E++ PK RQTMLFS
Sbjct: 414 VIATPGRFIDHMHNTAAFQVENLEILVLDEADRMLEEGFESQLNEILTTIPKSRQTMLFS 473
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD+LI++ + KP+RL D + LT+E VR+R+ +E + A L+ +C K +
Sbjct: 474 ATMTSSVDKLIRIGMDKPVRLMVDSKKQTVKGLTQEFVRLRQGKEDKRLAYLMYICEKIY 533
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T KVI+F K+ AHR++++F L LKA+ELHGN++Q QR++A+E FR +L+ATDV
Sbjct: 534 TEKVIVFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQAVEAFRSGKSSYLLATDV 593
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI V TVINY P+ Y+HRVGRTARAGR G A T + DR ++K K +
Sbjct: 594 ASRGLDIKNVSTVINYEAPQTHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVKAS 653
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR V + KW K I+ +E ++ +L+EE+EER + E + + EN+I H
Sbjct: 654 REQGAKVVSRQVPAEETEKWMKKIKSLEKEIEEVLEEEKEERAMTVTERDLKRGENLIVH 713
Query: 420 KEEIFARPKRTWFVTEKEK 438
++EI ARP+RTWF TEKEK
Sbjct: 714 EDEIKARPRRTWFETEKEK 732
>gi|302417364|ref|XP_003006513.1| ATP-dependent RNA helicase DRS1 [Verticillium albo-atrum VaMs.102]
gi|261354115|gb|EEY16543.1| ATP-dependent RNA helicase DRS1 [Verticillium albo-atrum VaMs.102]
Length = 757
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 227/455 (49%), Positives = 311/455 (68%), Gaps = 3/455 (0%)
Query: 23 PIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 82
P IP+AL G+D+ G A+TGSGKTAAF +P LERLLYRPK++P RV+ILTPTRELA
Sbjct: 253 PGHQKTIPIALMGKDLVGGAVTGSGKTAAFVVPILERLLYRPKKVPTSRVVILTPTRELA 312
Query: 83 VQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDL 142
+Q HS+ K+A +TDI+ L VGGLS KMQE LR PD+++ATPGR IDH+RNS S +
Sbjct: 313 IQCHSVATKLAAYTDIKFTLAVGGLSLKMQEAELRLRPDVIIATPGRFIDHMRNSASFAV 372
Query: 143 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLR 202
D + +L+LDEADR+LE GF+ E++E++ PK RQTMLFSAT+T VD LI++ + P R
Sbjct: 373 DAVEILVLDEADRMLEDGFADELNEILTSMPKSRQTMLFSATMTSSVDRLIRVGMNTPAR 432
Query: 203 LSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKIL 262
+ D K +TLT+E +R+R RE + LL +C +T +VIIF K+ AHR +I+
Sbjct: 433 VMVDSQKKTVTTLTQEFIRLRPGRESKRMGYLLFICKTLYTERVIIFFRQKKDAHRARII 492
Query: 263 FGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR 322
FGL L AELHG++ Q QR++++E FR V +L+ATD+A+RGLDI G+ TVINY P+
Sbjct: 493 FGLLGLSCAELHGSMNQTQRIQSVEDFRDGKVSYLLATDLASRGLDIKGIDTVINYEAPQ 552
Query: 323 DLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKW 379
L YVHRVGRTARAGR G AVT + DR ++KA K G+K+ SR++ KW
Sbjct: 553 KLEIYVHRVGRTARAGRAGVAVTLAAEPDRKVVKAAVKAGKAQGAKILSRVIEAGEADKW 612
Query: 380 SKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 439
+++ME+++ I +EE+EER L + EM+ K EN+I H++EI +RP+RTWF +EK+KK
Sbjct: 613 QDKVDEMEEEIEEINEEEKEERQLAQVEMQVRKGENLINHEDEIKSRPRRTWFESEKDKK 672
Query: 440 LAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKR 474
A +A +A + K + +D K E R
Sbjct: 673 SAKEAGRAELNGDKNEKKKGGGKMSNKDKKKAESR 707
>gi|195431333|ref|XP_002063697.1| GK15774 [Drosophila willistoni]
gi|194159782|gb|EDW74683.1| GK15774 [Drosophila willistoni]
Length = 792
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/439 (49%), Positives = 305/439 (69%), Gaps = 4/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPL+RA LGY PTPIQA+ IP+AL GRDICG A TG+GKTAA+ LPTLERLL
Sbjct: 163 QMNLSRPLMRAIGVLGYIYPTPIQASTIPIALLGRDICGCAATGTGKTAAYMLPTLERLL 222
Query: 62 YRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
YRP I RVL+L PTREL QV+ + +++ QFT I L +GGL K QE LR P
Sbjct: 223 YRPLNNKTITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQNP 282
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ATPGR+IDH++N+ S LD + VLILDEADR+L+ F+ ++ E++ C K RQTML
Sbjct: 283 DIVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 342
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT++E V +L +SL KP+++ + + + L +E +RIR +E ++E +L SL +
Sbjct: 343 FSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICR 402
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF ++F TK+ AHRL IL GL ++A ELHGNLTQ QRLE+L+ F+++ +D LIAT
Sbjct: 403 TFHDHCMVFVQTKKQAHRLHILLGLLNVRAGELHGNLTQQQRLESLKKFKEEQIDVLIAT 462
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI+GV+TVIN+ P Y+HRVGRTARAGR G +V+ + +R ++K I K
Sbjct: 463 DVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIK 522
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
A S +K+RI+ + I K+ + +E ++ IL EE+ ER + K E + +K E + +
Sbjct: 523 NAESSVKNRIIPPEIIEKYRNKLTALEPEIQNILDEEQAERQIAKTEQQLSKTERKLLGQ 582
Query: 421 EEIFARPKRTWFVTEKEKK 439
+ + +RTWF T+++++
Sbjct: 583 Q---GQDRRTWFQTKQQRE 598
>gi|396488909|ref|XP_003842973.1| similar to ATP-dependent RNA helicase DRS1 [Leptosphaeria maculans
JN3]
gi|312219551|emb|CBX99494.1| similar to ATP-dependent RNA helicase DRS1 [Leptosphaeria maculans
JN3]
Length = 811
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 217/439 (49%), Positives = 306/439 (69%), Gaps = 3/439 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRP+LR A+G+S+PTPIQ IP+A+ G+D+ G A TGSGKTAAF +P LERLLY
Sbjct: 285 MSLSRPILRGLAAVGFSEPTPIQNKAIPIAMQGKDVVGGAETGSGKTAAFLIPILERLLY 344
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK++P RV I PTRELAVQ ++ K+A FTDI L+ GG STK QE L++ PD+
Sbjct: 345 RPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSTKDQEAVLKTRPDV 404
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V+ATPGR IDH+ N+ + ++ L +L+LDEADR+LE GF ++++E++ PK RQTMLFS
Sbjct: 405 VIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFESQLNEILTTIPKSRQTMLFS 464
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD LI++ + KP+RL D LT+E +R+R+ +E + A L+ +C K +
Sbjct: 465 ATMTSTVDRLIRIGMDKPVRLMVDAKKHTVKGLTQEFIRLRQGKEDRRLAYLMYICEKFY 524
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+VIIF K+ AHR++++F L LKA+ELHGN++Q QR++A+E FR +L+ATDV
Sbjct: 525 NERVIIFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQAVEAFRSGKSAYLLATDV 584
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI V TVINY P+ Y+HRVGRTARAGREG A T + DR ++K K A
Sbjct: 585 ASRGLDIKNVSTVINYEAPQTHDIYMHRVGRTARAGREGRACTLAAEPDRKVVKQAVKAA 644
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ R V + +W + +E+++ +LQEE++ER+L E + + EN+I H
Sbjct: 645 RDQGAKVVQRQVPVEETDRWMTKLRGLEEEIEEVLQEEKDERLLSITERDLKRGENLILH 704
Query: 420 KEEIFARPKRTWFVTEKEK 438
++EI ARP+R WF +EKEK
Sbjct: 705 EDEIKARPRRVWFESEKEK 723
>gi|195474630|ref|XP_002089594.1| GE19181 [Drosophila yakuba]
gi|194175695|gb|EDW89306.1| GE19181 [Drosophila yakuba]
Length = 782
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 219/440 (49%), Positives = 304/440 (69%), Gaps = 7/440 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPL+RA LGY PTPIQA+ IP+AL GRDICG A TG+GKTAA+ LPTLERLL
Sbjct: 161 QMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLL 220
Query: 62 YRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
YRP AI RVL+L PTREL QV+ + +++ QFT I L +GGL K QE LR P
Sbjct: 221 YRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQNP 280
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ATPGR+IDH++N+ S LD + VLILDEADR+L+ F+ ++ E++ C K RQTML
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT++E V +L +SL KP+++ + + + L +E +RIR +E ++E +L SL +
Sbjct: 341 FSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICR 400
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF ++F TK+ AHRL IL GL ++A ELHGNLTQ QRLE+L+ F+++ +D LIAT
Sbjct: 401 TFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIAT 460
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI+GV+TVIN+ P Y+HRVGRTARAGR G +V+ + +R ++K I K
Sbjct: 461 DVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIK 520
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAE-NMIAH 419
A S +K+RI+ + I K+ + +E ++ IL EE+ ER L K E + +K E ++
Sbjct: 521 NAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNILDEEQAERQLAKTEQQLSKTERKLLGQ 580
Query: 420 KEEIFARPKRTWFVTEKEKK 439
E +R WF T+++++
Sbjct: 581 TNE-----RRGWFQTKQQRE 595
>gi|198423018|ref|XP_002125988.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
[Ciona intestinalis]
Length = 718
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/440 (48%), Positives = 301/440 (68%), Gaps = 4/440 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++N+SRPLL+A + Y PTPIQ A IP+ L GRDIC A TG+GKTAAF LP LERLL
Sbjct: 175 QMNISRPLLKAISEINYVTPTPIQQAAIPIGLLGRDICACAATGTGKTAAFMLPVLERLL 234
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
YR + P RVL L PTRELAVQV+S+ +AQ +++R CL GGL K QE ALR PD
Sbjct: 235 YRTQSTPITRVLCLVPTRELAVQVYSVTHHLAQHSNLRICLAAGGLDMKSQEAALRQGPD 294
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR+IDHL N+ S DL + +LILDEADR+L+ F +++E+++LC RQTMLF
Sbjct: 295 IVIATPGRLIDHLHNTPSFDLQMVEILILDEADRMLDEFFEDQMNEIIKLCSHHRQTMLF 354
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++E V EL +SL P+++ + + L +E +RIR RE ++EA++ +LCS++
Sbjct: 355 SATMSEQVQELAAVSLKNPVKIFVNSNTDVAPFLRQEFIRIRETREGDREAIVAALCSRS 414
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F S V++F+ TK+ AHR+ I+ GL LKA ELHGNL+Q QRLE+L+ F+ +D L+ TD
Sbjct: 415 FISNVLVFTQTKKQAHRMHIVLGLLGLKAGELHGNLSQGQRLESLKRFKNGDIDILVCTD 474
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARGLDI V+TVIN P YVHRVGRTARAG+ G +V+ V + +R LLK I K
Sbjct: 475 LAARGLDIENVKTVINLTMPNTQQHYVHRVGRTARAGKSGRSVSLVGETERKLLKEIVKF 534
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 421
A + +KSR+V I+K+ + ++E +V +++ E +E+ + +E + KAE +I +
Sbjct: 535 AKNPVKSRVVPPDVISKFRDKLNEIESEVGDVMKMEAQEKQVIASENQVKKAEKIIKGE- 593
Query: 422 EIFARPKRTWFVTEKEKKLA 441
A KR WF + +++ A
Sbjct: 594 ---APEKRAWFQNKMQREFA 610
>gi|46124501|ref|XP_386804.1| hypothetical protein FG06628.1 [Gibberella zeae PH-1]
gi|91206590|sp|Q4I830.1|DRS1_GIBZE RecName: Full=ATP-dependent RNA helicase DRS1
Length = 796
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 224/440 (50%), Positives = 308/440 (70%), Gaps = 3/440 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRP++R ++G++KPTPIQA IP+AL G+D+ G A TGSGKT AF LP LERLLY
Sbjct: 261 MSLSRPIMRGLASVGFTKPTPIQAKSIPIALMGKDVVGGAETGSGKTGAFILPILERLLY 320
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK+IP RV++L PTRELA+Q H++ K+A FTDI+ L VGGLS K QE L+ PD+
Sbjct: 321 RPKKIPTTRVVVLLPTRELAIQCHAVATKLAAFTDIKFTLAVGGLSLKAQELELKLRPDV 380
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D + +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 381 IIATPGRFIDHMRNSASFSVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFS 440
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD LI++ L +P R+ + K +TL +E VR+R RE + L +C +
Sbjct: 441 ATMTSSVDRLIQIGLNRPARVMVNSQKKTVTTLVQEFVRLRPGREDKRMGYLAHVCKNLY 500
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+VIIF K+ AHR +I+FGL L AELHG++ Q QR+ ++E FR V +L+ATD+
Sbjct: 501 KERVIIFFRQKKDAHRARIIFGLLGLSCAELHGSMNQTQRISSVEDFRDGKVAYLLATDL 560
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV TVINY P+ L YVHRVGRTARAGR+G A+T ++DR ++KA K
Sbjct: 561 ASRGLDIKGVDTVINYEAPQSLDIYVHRVGRTARAGRKGVALTIAAESDRKVVKAAVKAG 620
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR + + I++M+D++ I++EE+EE+ L EM+ K ENMI H
Sbjct: 621 KAQGAKIVSRQLDSGEVDALQTQIDEMDDEIDEIMEEEKEEKQLAHVEMQVKKGENMIQH 680
Query: 420 KEEIFARPKRTWFVTEKEKK 439
+ EI RP+RTWF +E +KK
Sbjct: 681 EAEIKGRPRRTWFESEHDKK 700
>gi|21356161|ref|NP_651970.1| Rs1 [Drosophila melanogaster]
gi|7304081|gb|AAF59119.1| Rs1 [Drosophila melanogaster]
gi|28626484|gb|AAO49161.1| LD15481p [Drosophila melanogaster]
Length = 782
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 219/440 (49%), Positives = 304/440 (69%), Gaps = 7/440 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPL+RA LGY PTPIQA+ IP+AL GRDICG A TG+GKTAA+ LPTLERLL
Sbjct: 161 QMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLL 220
Query: 62 YRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
YRP AI RVL+L PTREL QV+ + +++ QFT I L +GGL K QE LR P
Sbjct: 221 YRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLRQNP 280
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ATPGR+IDH++N+ S LD + VLILDEADR+L+ F+ ++ E++ C K RQTML
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT++E V +L +SL KP+++ + + + L +E +RIR +E ++E +L SL +
Sbjct: 341 FSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICR 400
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF ++F TK+ AHRL IL GL ++A ELHGNLTQ QRLE+L+ F+++ +D LIAT
Sbjct: 401 TFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIAT 460
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI+GV+TVIN+ P Y+HRVGRTARAGR G +V+ + +R ++K I K
Sbjct: 461 DVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIK 520
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAE-NMIAH 419
A S +K+RI+ + I K+ + +E ++ IL EE+ ER L K E + +K E ++
Sbjct: 521 NAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNILDEEQAERQLAKTEQQLSKTERKLLGQ 580
Query: 420 KEEIFARPKRTWFVTEKEKK 439
E +R WF T+++++
Sbjct: 581 TNE-----RRGWFQTKQQRE 595
>gi|194863559|ref|XP_001970500.1| GG23340 [Drosophila erecta]
gi|190662367|gb|EDV59559.1| GG23340 [Drosophila erecta]
Length = 782
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 219/440 (49%), Positives = 304/440 (69%), Gaps = 7/440 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPL+RA LGY PTPIQA+ IP+AL GRDICG A TG+GKTAA+ LPTLERLL
Sbjct: 161 QMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLL 220
Query: 62 YRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
YRP AI RVL+L PTREL QV+ + +++ QFT I L +GGL K QE LR P
Sbjct: 221 YRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQNP 280
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ATPGR+IDH++N+ S LD + VLILDEADR+L+ F+ ++ E++ C K RQTML
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSVEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT++E V +L +SL KP+++ + + + L +E +RIR +E ++E +L SL +
Sbjct: 341 FSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICR 400
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF ++F TK+ AHRL IL GL ++A ELHGNLTQ QRLE+L+ F+++ +D LIAT
Sbjct: 401 TFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIAT 460
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI+GV+TVIN+ P Y+HRVGRTARAGR G +V+ + +R ++K I K
Sbjct: 461 DVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIK 520
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAE-NMIAH 419
A S +K+RI+ + I K+ + +E ++ IL EE+ ER L K E + +K E ++
Sbjct: 521 NAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNILDEEQAERQLAKTEQQLSKTERKLLGQ 580
Query: 420 KEEIFARPKRTWFVTEKEKK 439
E +R WF T+++++
Sbjct: 581 TNE-----RRGWFQTKQQRE 595
>gi|392884823|ref|NP_490891.2| Protein Y71G12B.8 [Caenorhabditis elegans]
gi|373219451|emb|CCD67990.1| Protein Y71G12B.8 [Caenorhabditis elegans]
Length = 739
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 210/438 (47%), Positives = 301/438 (68%), Gaps = 2/438 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSR +L+AC GYS PTPIQ ACIP+ALTG+DIC A TG+GKTAAF LP LER++
Sbjct: 152 QMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILERMI 211
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
YRPK RVL+L PTRELA+QV + K++ F + CL GGL K QE ALRS PD
Sbjct: 212 YRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALRSGPD 271
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+VVATPGR+IDHL NS S +L ++ VL+LDEADR+LE F +++EL+RLC + RQT+LF
Sbjct: 272 VVVATPGRLIDHLHNSPSFNLSNIEVLVLDEADRMLEEAFRDQMNELIRLCAQNRQTLLF 331
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+TE++DEL +SL KP+++ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 332 SATMTEEIDELASMSLQKPVKIFINENTDTALKLRQEFIRIRAGRETDREAMVAALVTRT 391
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F + I+F TK+ R++IL GL +K ++ +LTQ QR+E+L F+K +D L++TD
Sbjct: 392 FQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESLSKFKKAEIDVLVSTD 451
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK- 360
+A+RGLDI GVQTVIN P+ + Y+HRVGRTARAG+ G +++ V +++R LLK I
Sbjct: 452 LASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEDERKLLKEIVNS 511
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
A LK R+VA + + + + I+++E+ + I +E+R E+ LR AE K +N +
Sbjct: 512 NADRTLKQRLVAPEVVEAYRRRIDELEETIQQIDEEDRAEKELRIAEASMAKTQNALEVG 571
Query: 421 EEIFA-RPKRTWFVTEKE 437
E A +R W + E +
Sbjct: 572 ENGGAPAERRVWMMKESQ 589
>gi|453086868|gb|EMF14909.1| DEAD-domain-containing protein, partial [Mycosphaerella populorum
SO2202]
Length = 725
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 223/442 (50%), Positives = 303/442 (68%), Gaps = 3/442 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+NLSRP+LR A+G+ KPTPIQA IP+AL GRD+ G A TGSGKT AF +P LERL++
Sbjct: 239 MNLSRPILRGLAAVGFDKPTPIQAKSIPVALEGRDLVGGAETGSGKTGAFIIPILERLMF 298
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPKR RV+IL PTRELA+Q ++ +K+A TDI +GGL+ + QE AL+ PDI
Sbjct: 299 RPKRTATTRVVILMPTRELALQCFNVAKKLAAHTDITFGQAIGGLNLREQEKALKLRPDI 358
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V+ATPGR ID RNS D+ + +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 359 VIATPGRFIDLERNSTGFDVSTVEILVLDEADRMLEEGFADELNEILTKIPKSRQTMLFS 418
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD+LI+ L +P+RL D + L +E VR+R RE + A L+ LC K +
Sbjct: 419 ATMTTKVDDLIRSGLQRPVRLMVDSQQQTVKGLVQEFVRLRPGREKKRLAYLMYLCEKVY 478
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T +VIIF K+ AHR++++F LA LKAAELHG L+Q QR+ A+E FR FL+ATD+
Sbjct: 479 TDRVIIFFRQKKEAHRVRVIFALAGLKAAELHGTLSQEQRINAIESFRTGKAGFLLATDL 538
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI G++TVINY P+ Y+HRVGRTARAGR G A T + DR ++KA K
Sbjct: 539 ASRGLDIKGIETVINYEAPQSHEIYLHRVGRTARAGRTGRACTLAAEPDRKVVKAAVKAG 598
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+ +K R + W IE M D + +L+EE+EE+ L + + TKA+NM+ +
Sbjct: 599 KAQGAVIKQRTIEAHDADAWHARIEAMADDIEEVLREEKEEKALNIVDKQLTKADNMVKY 658
Query: 420 KEEIFARPKRTWFVTEKEKKLA 441
++EI +RPK+TWF +EK+K+ A
Sbjct: 659 EDEIKSRPKKTWFESEKDKQAA 680
>gi|449296384|gb|EMC92404.1| hypothetical protein BAUCODRAFT_27693 [Baudoinia compniacensis UAMH
10762]
Length = 699
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/444 (48%), Positives = 312/444 (70%), Gaps = 3/444 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRP+++ ++G+S TPIQ IP+AL G+DI G A+TGSGKTAAF +P LERLLY
Sbjct: 198 MSLSRPIMKGLASVGFSAATPIQRKAIPVALEGKDIVGGAVTGSGKTAAFMIPILERLLY 257
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPKR+ RV IL PTRELA+Q ++ +K+A FTDI +GGL+ + QE L+ PDI
Sbjct: 258 RPKRVATTRVAILMPTRELALQCLAVAKKLAAFTDITFGRAIGGLNLREQEKELKLRPDI 317
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V+ATPGR ID +RN + D + +L+LDEADR+LE GFS E++E+++ PK RQTMLFS
Sbjct: 318 VIATPGRFIDFMRNYNAFQTDKIEILVLDEADRMLEEGFSDELNEILKTIPKSRQTMLFS 377
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD+LI++ + +P+R+ D S L +E +R+R RE + L+ LC++
Sbjct: 378 ATMTSRVDDLIRVGMQRPVRIMVDAQKASASGLVQEFIRLRPGREEKRLGYLMHLCTQVH 437
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+VIIF K+ AHR++++F L LKAAELHG+++Q QR+ A+E FR FL+ATD+
Sbjct: 438 RDRVIIFFRQKKEAHRVRVIFALCDLKAAELHGSMSQEQRINAIERFRSGRASFLLATDL 497
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI G++TVINY P+ Y+HRVGRTARAGR+G A T + DR ++KA K A
Sbjct: 498 ASRGLDIKGIETVINYEAPQTHEIYLHRVGRTARAGRKGIACTLAAEPDRKIVKAAVKAA 557
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G++++ R V ++ W K + + D++ +L+EE+EER++++ E + T+AEN++ +
Sbjct: 558 KAHGAQVRQRTVDKEDADAWQKRCDDLHDEIEDVLREEKEERVMQQTERDITRAENVVKY 617
Query: 420 KEEIFARPKRTWFVTEKEKKLAVK 443
++EI ARPK+TWF +EKEK A K
Sbjct: 618 EDEIKARPKKTWFESEKEKVAAKK 641
>gi|321473370|gb|EFX84337.1| hypothetical protein DAPPUDRAFT_209410 [Daphnia pulex]
Length = 592
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 212/437 (48%), Positives = 303/437 (69%), Gaps = 1/437 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E+NLSRPL++A ++ + PTPIQ+A IP+AL GRD+CG A TG+GKTAAF LP LERL+
Sbjct: 20 EMNLSRPLMKAIASMNFVHPTPIQSATIPVALLGRDVCGCAATGTGKTAAFMLPVLERLM 79
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
YRPK RVL+L PTREL VQV+ + ++++QFT+I+ L +GGL K+QE LR PD
Sbjct: 80 YRPKVSATTRVLVLVPTRELGVQVYQVSKQLSQFTNIQIGLSIGGLDLKVQEKVLRGNPD 139
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+V+ATPGR+IDHLRN+ S L+ + VLILDEADR+L+ F ++ E++ C ++RQTMLF
Sbjct: 140 VVIATPGRLIDHLRNTPSFSLEAIDVLILDEADRMLDEFFIEQVKEIIMQCGRKRQTMLF 199
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++ +V +L +SL KP+++ + + L +E VRIR E ++EA+L +L +T
Sbjct: 200 SATMSNEVRDLAAVSLNKPIKVFVNNNRDVAFNLRQEFVRIRPNHEGDREAILCALVCRT 259
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F + ++F TK HRL + GL ++ ELHGNL+Q QRLEAL F+++ +D L++TD
Sbjct: 260 FRNHCMVFVQTKMLCHRLHVQLGLLGIRVGELHGNLSQPQRLEALRKFKEEDIDILVSTD 319
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GVQTVINY P + Y+HRVGRTARAGR G +V+ + +R ++K I KR
Sbjct: 320 VAARGLDIPGVQTVINYTMPPTIERYIHRVGRTARAGRSGVSVSLAGEGERKVVKEIVKR 379
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 421
A + +KSR++ + + K+ K + ++ V +I+ EE+ E L E + +AE M+ K
Sbjct: 380 ANNPVKSRLIPNEILEKYKKKLALIDPDVESIITEEKSESQLSAMENQINRAEKMVKVKG 439
Query: 422 EIFARPKRTWFVTEKEK 438
E A PKR WF T +E+
Sbjct: 440 EP-AAPKRQWFQTHQER 455
>gi|189238701|ref|XP_968537.2| PREDICTED: similar to Rs1 CG2173-PA [Tribolium castaneum]
Length = 1657
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 228/439 (51%), Positives = 314/439 (71%), Gaps = 5/439 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A + + PTPIQA+ IP+AL GRDICG A TG+GKTAA+ LPTLERLL
Sbjct: 1107 QMNLSRPLLKAISDMKFVHPTPIQASTIPVALMGRDICGCAATGTGKTAAYMLPTLERLL 1166
Query: 62 YRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
YRP P + RVL+L PTREL VQV+ + +++AQF+DI+ L VGGL K QET LR P
Sbjct: 1167 YRPVGGPPVTRVLVLVPTRELGVQVYQVTKQLAQFSDIQIGLAVGGLDLKAQETILRKNP 1226
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ATPGR+IDHL+++ + LD + VLILDEADR+L+ F+ ++ E+++ C + RQTML
Sbjct: 1227 DIVIATPGRLIDHLKSTPTFGLDSIEVLILDEADRMLDEYFAEQMKEIIKQCARTRQTML 1286
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE+V+ L +SL KP+RL D + + L +E VRIR+ +E ++EA+L +L +
Sbjct: 1287 FSATMTEEVESLAAVSLNKPVRLFVDSNREVAFGLRQEFVRIRQDKEGDREAILAALVCR 1346
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF ++F TK+ AHRL IL GL LK ELHGNLTQ QRL+AL+ F++ +D L+AT
Sbjct: 1347 TFREHCMVFVQTKKQAHRLHILLGLLGLKVGELHGNLTQPQRLDALQKFKETQIDVLVAT 1406
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI GVQTVIN+ P + Y+HRVGRTARAGR G +V+ + +R ++K + K
Sbjct: 1407 DVAARGLDIQGVQTVINFVMPATVEHYIHRVGRTARAGRAGVSVSLAGEQERKIVKDVVK 1466
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
+A +KSR++ + K+ +E++E Q+A ILQEE EER + K E + K E ++
Sbjct: 1467 KAKHPVKSRVIPPDILEKYKNKLEKLEPQIAQILQEEYEERQVAKVENQVNKVEKLLK-G 1525
Query: 421 EEIFARPKRTWFVTEKEKK 439
E+ ARP WF T+K++K
Sbjct: 1526 EKGEARP---WFQTKKQRK 1541
>gi|357617988|gb|EHJ71096.1| putative DEAD box ATP-dependent RNA helicase [Danaus plexippus]
Length = 776
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/440 (48%), Positives = 306/440 (69%), Gaps = 4/440 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+NLSRP+L+A +L Y PTPIQAA IP+AL G+DIC A TG+GKTAA+ +P LERLLY
Sbjct: 172 MNLSRPMLKAIASLNYVHPTPIQAATIPIALLGKDICACAATGTGKTAAYMVPVLERLLY 231
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+P RVL+L PTREL QVH++ ++AQFT + L VGGL K QE+ LR PD+
Sbjct: 232 KPTE-RRTRVLVLVPTRELGAQVHTVTRQLAQFTSVTIGLSVGGLDVKYQESVLRRHPDV 290
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V+ATPGR+IDH+RN+ S DL+ + VLILDEADR+L+ F+ ++ E++R C +RQTMLFS
Sbjct: 291 VIATPGRLIDHVRNTPSFDLNSIEVLILDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFS 350
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+++ V +L +SL KP++L D + L +E VRIR+ RE ++EA+L +L +TF
Sbjct: 351 ATMSDQVRDLAAVSLKKPVKLFLDSNKDVAFNLRQEFVRIRKERECDREAILAALVCRTF 410
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+ +IF TK+ AHRL + GL +K AELHG L Q QRL++L+ FR++ VD L+ATDV
Sbjct: 411 KDRAVIFVQTKKQAHRLHVALGLLGIKVAELHGALNQPQRLDSLKRFREEQVDVLVATDV 470
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
AARGLDI GV+TV+N+ P + Y+HRVGRTARAGR G +V+ + +R+L+K I +RA
Sbjct: 471 AARGLDIPGVKTVLNFTLPATIEHYIHRVGRTARAGRAGVSVSLAGEGERNLVKTIVRRA 530
Query: 363 GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE- 421
+KSR++ + K+ + ++E ++AAIL EE ++ L+K E + K E+ I +++
Sbjct: 531 RRAVKSRVLPADIVAKYRDKLAKLEPEIAAILDEEYADKQLKKMEKQTNKLESAIKNEKT 590
Query: 422 --EIFARPKRTWFVTEKEKK 439
+ A + WF T KEK+
Sbjct: 591 DTPMEAPRQHDWFQTPKEKR 610
>gi|358055869|dbj|GAA98214.1| hypothetical protein E5Q_04897 [Mixia osmundae IAM 14324]
Length = 835
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 268/610 (43%), Positives = 375/610 (61%), Gaps = 61/610 (10%)
Query: 5 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP 64
LSRPLL A ALG + PT IQA IP+AL G+DI S+ TGSGKT AF L LERLLYR
Sbjct: 275 LSRPLLLALGALGLTTPTRIQAQTIPVALMGKDIVASSNTGSGKTVAFWLGVLERLLYRD 334
Query: 65 KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVV 124
K+ RVL++ PTRELAVQVHS+ + +A++TDI CL VGGLS K+QE LR PD+VV
Sbjct: 335 KKDARTRVLVICPTRELAVQVHSVGKALARYTDISFCLCVGGLSLKVQEAELRQRPDVVV 394
Query: 125 ATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 184
+TPGR+IDH+RN+ + LD L +LI+DEADR+LE GF E+ E+++ CP+ RQ++LFSAT
Sbjct: 395 STPGRLIDHVRNTSTFTLDSLEILIIDEADRILEEGFRDELTEIIKECPRSRQSLLFSAT 454
Query: 185 LTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTS 244
+TEDV+EL +LSL KP+R+ D + +L +E +RIR+ ++EA LL++C +TF
Sbjct: 455 ITEDVNELARLSLDKPVRIKIDETGTTVESLMQEFLRIRKDTPASREAALLAICQRTFRG 514
Query: 245 KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 304
+ IIF +KQAAHR +IL GL L A ELHG+L+Q QRL++L+ F++ L ATD+A+
Sbjct: 515 QTIIFFRSKQAAHRARILLGLCGLAAEELHGDLSQEQRLQSLQNFKEGTATHLCATDLAS 574
Query: 305 RGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA-G 363
RGLDI GVQ+VIN+ P Y+HRVGRTARAG G A+T V D+DR ++K K A
Sbjct: 575 RGLDIKGVQSVINFEMPGSFDIYLHRVGRTARAGNAGRALTLVGDSDRKMVKQATKAAPA 634
Query: 364 SKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEI 423
+ K R++ + I + + + +++ ++ ++QEEREE+ +R+AEMEA K +N+I +K+EI
Sbjct: 635 DRFKQRVLPPEVIKEATDRVTELQAEINTVMQEEREEKEIRRAEMEAKKGQNLIEYKQEI 694
Query: 424 FARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLP 483
RP+RTWF +E +KK A A A G +EK + ++ N
Sbjct: 695 AGRPRRTWFQSEGDKKKAKDAGTAQYNSG-----------------FEEKARGPKKLNHK 737
Query: 484 RKERRKLEAAREMLEDEDQVDKLQGSGKDKKEKAGISMVDLAYRRAKAVKAKQKALDAGK 543
+K R+ D L+ + D + +G + A R+AK KA AGK
Sbjct: 738 QKRRQ---------------DALRDARNDTRVTSG--AISSAVRQAK------KAAQAGK 774
Query: 544 IVKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQK----------RTGGIGKKPK-HS 592
I + +K + R F DM+ ++ K RTG KPK H+
Sbjct: 775 ITQVKAAPAKTGKK---------RSTFAEDMTARRNKSKGKPGASPARTGPPKGKPKAHA 825
Query: 593 FKSKSRYKRR 602
K K + KRR
Sbjct: 826 AKLKGKGKRR 835
>gi|50286247|ref|XP_445552.1| hypothetical protein [Candida glabrata CBS 138]
gi|74661437|sp|Q6FW42.1|DRS1_CANGA RecName: Full=ATP-dependent RNA helicase DRS1
gi|49524857|emb|CAG58463.1| unnamed protein product [Candida glabrata]
Length = 725
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 219/450 (48%), Positives = 316/450 (70%), Gaps = 13/450 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L LSRP+++ LGY KP+PIQ+A IP+AL G+DI A+TGSGKTAAF +P +ERLL
Sbjct: 210 DLALSRPVMKGLSNLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLL 269
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMP 120
Y+P ++ + RV++LTPTRELA+QV + +KI QF +++ L VGGL+ + QE L++ P
Sbjct: 270 YKPAKVASTRVIVLTPTRELAIQVADVGKKIGQFVSNLTFGLAVGGLNLRQQEQMLKTRP 329
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ATPGR IDH+RNS S ++D + VL++DEADR+LE GF E++E++ L P +RQT+L
Sbjct: 330 DIVIATPGRFIDHIRNSASFNVDSVEVLVIDEADRMLEDGFQDELNEIMSLLPSKRQTLL 389
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+ + +LI LSL +P+R+ DP + + LT+E VRIR+ R+ + ++L +L K
Sbjct: 390 FSATMNSRIKQLISLSLKRPVRIMIDPPKQAATKLTQEFVRIRK-RDHLKPSLLFNLIRK 448
Query: 241 ---TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
++++F K AH+L+I+ GL + AELHG+LTQ QRL+++ F+ V L
Sbjct: 449 LDPNGQKRIVVFVARKDMAHKLRIILGLLGMAVAELHGSLTQEQRLDSVNKFKSLQVPVL 508
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD--NDRSLL 355
I TD+A+RGLDI ++ VINY P+ Y+HRVGRTARAGREG ++TFV + +RS++
Sbjct: 509 ICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSITFVGEASAERSIV 568
Query: 356 K-AI-----AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 409
K AI ++ GSK R V + + +KI+E M+ V IL EE+EE+ + +AEME
Sbjct: 569 KDAIRGVNDSEIPGSKAVGRNVDWNQVEETNKIVENMDQTVQDILVEEKEEKEILRAEME 628
Query: 410 ATKAENMIAHKEEIFARPKRTWFVTEKEKK 439
K EN++ HK+EI +RPKRTWF +EKEKK
Sbjct: 629 LKKGENLLKHKDEIQSRPKRTWFQSEKEKK 658
>gi|366986679|ref|XP_003673106.1| hypothetical protein NCAS_0A01550 [Naumovozyma castellii CBS 4309]
gi|342298969|emb|CCC66713.1| hypothetical protein NCAS_0A01550 [Naumovozyma castellii CBS 4309]
Length = 748
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 216/454 (47%), Positives = 316/454 (69%), Gaps = 16/454 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRP+L+ LGY+KP+PIQ+A IP+AL+G+DI A+TGSGKTAAF +P +ERLL+
Sbjct: 231 LSLSRPVLKGLATLGYTKPSPIQSATIPVALSGKDIIAGAVTGSGKTAAFMIPVIERLLF 290
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD-IRCCLVVGGLSTKMQETALRSMPD 121
+ +I A RV++LTPTRELA+Q+ + +KI +F + I L VGGL+ + QE L++ PD
Sbjct: 291 KSAKIAATRVIVLTPTRELAIQISDVGKKIGKFINGITFGLAVGGLNLRQQEQELKARPD 350
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR IDH+RNS S ++D + +L++DEADR+LE GF E++E+++L P +RQT+LF
Sbjct: 351 IVIATPGRFIDHIRNSASFNVDSVEILVIDEADRMLEEGFQEELNEIMQLLPNKRQTLLF 410
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK- 240
SAT+ + +L+ LSL KP+R+ DP + S LT+E VRI R R+ + A+L +L K
Sbjct: 411 SATMNSKIKQLVSLSLRKPVRIMIDPPKQAASRLTQEFVRI-RARDHLKPALLFNLIKKL 469
Query: 241 --TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
++++F K+ AHRL+I+ GL + AELHG+L+Q QRLE++ F+ + LI
Sbjct: 470 DGYGQKRMVVFVSRKEMAHRLRIILGLLGMNVAELHGSLSQEQRLESVTKFKSLEIPVLI 529
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLLK 356
TD+A+RGLDI ++ VINY P+ Y+HRVGRTARAGREG +V+FV T N+RS+++
Sbjct: 530 CTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVSFVGETSNERSIVR 589
Query: 357 AIAKRA---------GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAE 407
K GS+ R V + + +K++E+M D + +L EE++E+ + +AE
Sbjct: 590 DAIKSVEEVSKIKSDGSRALGRQVNWNQVEETNKLVEKMSDTIEDVLVEEKQEKEILRAE 649
Query: 408 MEATKAENMIAHKEEIFARPKRTWFVTEKEKKLA 441
M+ K ENM+ HK+EI +RP+RTWF TE EKK A
Sbjct: 650 MQLKKGENMLKHKQEIQSRPRRTWFQTEAEKKNA 683
>gi|270010045|gb|EFA06493.1| hypothetical protein TcasGA2_TC009390 [Tribolium castaneum]
Length = 691
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 228/439 (51%), Positives = 314/439 (71%), Gaps = 5/439 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A + + PTPIQA+ IP+AL GRDICG A TG+GKTAA+ LPTLERLL
Sbjct: 141 QMNLSRPLLKAISDMKFVHPTPIQASTIPVALMGRDICGCAATGTGKTAAYMLPTLERLL 200
Query: 62 YRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
YRP P + RVL+L PTREL VQV+ + +++AQF+DI+ L VGGL K QET LR P
Sbjct: 201 YRPVGGPPVTRVLVLVPTRELGVQVYQVTKQLAQFSDIQIGLAVGGLDLKAQETILRKNP 260
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ATPGR+IDHL+++ + LD + VLILDEADR+L+ F+ ++ E+++ C + RQTML
Sbjct: 261 DIVIATPGRLIDHLKSTPTFGLDSIEVLILDEADRMLDEYFAEQMKEIIKQCARTRQTML 320
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE+V+ L +SL KP+RL D + + L +E VRIR+ +E ++EA+L +L +
Sbjct: 321 FSATMTEEVESLAAVSLNKPVRLFVDSNREVAFGLRQEFVRIRQDKEGDREAILAALVCR 380
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF ++F TK+ AHRL IL GL LK ELHGNLTQ QRL+AL+ F++ +D L+AT
Sbjct: 381 TFREHCMVFVQTKKQAHRLHILLGLLGLKVGELHGNLTQPQRLDALQKFKETQIDVLVAT 440
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI GVQTVIN+ P + Y+HRVGRTARAGR G +V+ + +R ++K + K
Sbjct: 441 DVAARGLDIQGVQTVINFVMPATVEHYIHRVGRTARAGRAGVSVSLAGEQERKIVKDVVK 500
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
+A +KSR++ + K+ +E++E Q+A ILQEE EER + K E + K E ++
Sbjct: 501 KAKHPVKSRVIPPDILEKYKNKLEKLEPQIAQILQEEYEERQVAKVENQVNKVEKLLKG- 559
Query: 421 EEIFARPKRTWFVTEKEKK 439
E+ ARP WF T+K++K
Sbjct: 560 EKGEARP---WFQTKKQRK 575
>gi|255711296|ref|XP_002551931.1| KLTH0B03278p [Lachancea thermotolerans]
gi|238933309|emb|CAR21493.1| KLTH0B03278p [Lachancea thermotolerans CBS 6340]
Length = 739
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 219/449 (48%), Positives = 314/449 (69%), Gaps = 14/449 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRP+L+ AL Y KP+PIQ+A IP+AL G+DI A+TGSGKTAA+ +P +ERLLY
Sbjct: 228 LSLSRPVLKGLGALNYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAYMIPIIERLLY 287
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD-IRCCLVVGGLSTKMQETALRSMPD 121
+P +I + RV++LTPTRELA+QV + K+A+F + I L VGGL+ + QE LRS PD
Sbjct: 288 KPAQIASTRVIVLTPTRELAIQVSDVGAKLAKFVNGISFGLAVGGLNLRQQEQTLRSRPD 347
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR+IDH+RNS S ++D + +L++DEADR+LE GF E++E++ L P +RQT+LF
Sbjct: 348 IVIATPGRLIDHIRNSASFNVDSVEILVIDEADRMLEEGFQDELNEIMSLIPSKRQTLLF 407
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ +++LI LSL KP+++ DP + + LT+E VR+R+ E+ + A+L L K
Sbjct: 408 SATMNSKINQLISLSLKKPVKIMIDPPRQAAAKLTQEFVRVRKRDEL-KPALLFHLIRKL 466
Query: 242 ---FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+V++F K+ AH+L+I+ GL +K AELHG+L+Q QRL+A+ F+ V LI
Sbjct: 467 DDLSQKRVVVFVARKEVAHKLRIILGLLGMKVAELHGSLSQEQRLQAVNGFKSLQVPVLI 526
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLLK 356
TD+A+RGLDI ++ VINY P+ Y+HRVGRTARAGREG +++FV + DR+++K
Sbjct: 527 CTDLASRGLDIPKIEFVINYDMPKTYDIYLHRVGRTARAGREGRSISFVGESSQDRNVVK 586
Query: 357 AIAKRAGSKLKSRIVAEQSITKWSKIIE------QMEDQVAAILQEEREERILRKAEMEA 410
K A K V + + W+K+ E +D +A IL+EE++E+ + +AEME
Sbjct: 587 NAIKSAEENKKQDTVVGR-MVDWAKVEEINKLTTNKDDVIAEILEEEKQEKEILRAEMEV 645
Query: 411 TKAENMIAHKEEIFARPKRTWFVTEKEKK 439
K ENM+ HK+EI ARP+RTWF TE EKK
Sbjct: 646 RKGENMLKHKDEISARPRRTWFQTEGEKK 674
>gi|5901872|gb|AAD55444.1|AF181659_1 BcDNA.GM05306 [Drosophila melanogaster]
Length = 641
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 219/440 (49%), Positives = 304/440 (69%), Gaps = 7/440 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPL+RA LGY PTPIQA+ IP+AL GRDICG A TG+GKTAA+ LPTLERLL
Sbjct: 161 QMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLL 220
Query: 62 YRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
YRP AI RVL+L PTREL QV+ + +++ QFT I L +GGL K QE LR P
Sbjct: 221 YRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLRQNP 280
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ATPGR+IDH++N+ S LD + VLILDEADR+L+ F+ ++ E++ C K RQTML
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT++E V +L +SL KP+++ + + + L +E +RIR +E ++E +L SL +
Sbjct: 341 FSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICR 400
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF ++F TK+ AHRL IL GL ++A ELHGNLTQ QRLE+L+ F+++ +D LIAT
Sbjct: 401 TFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIAT 460
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI+GV+TVIN+ P Y+HRVGRTARAGR G +V+ + +R ++K I K
Sbjct: 461 DVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIK 520
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAE-NMIAH 419
A S +K+RI+ + I K+ + +E ++ IL EE+ ER L K E + +K E ++
Sbjct: 521 NAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNILDEEQAERQLAKTEQQLSKTERKLLGQ 580
Query: 420 KEEIFARPKRTWFVTEKEKK 439
E +R WF T+++++
Sbjct: 581 TNE-----RRGWFQTKQQRE 595
>gi|45184660|ref|NP_982378.1| AAL164Cp [Ashbya gossypii ATCC 10895]
gi|74695973|sp|Q75F95.1|DRS1_ASHGO RecName: Full=ATP-dependent RNA helicase DRS1
gi|44980006|gb|AAS50202.1| AAL164Cp [Ashbya gossypii ATCC 10895]
gi|374105576|gb|AEY94487.1| FAAL164Cp [Ashbya gossypii FDAG1]
Length = 734
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 221/448 (49%), Positives = 316/448 (70%), Gaps = 12/448 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRP+L+ ALGY+KP+PIQ A IP+AL G+D+ A+TGSGKTAAF +P +ERLLY
Sbjct: 224 LSLSRPVLKGLAALGYTKPSPIQGATIPIALLGKDVIAGAVTGSGKTAAFMIPIIERLLY 283
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPD 121
+P +I + RVL+LTPTRELA+QV + +K+ +F + + L VGGL+ + QE AL+ PD
Sbjct: 284 KPAKIASTRVLVLTPTRELAIQVADVGKKLGKFVSGLTFGLAVGGLNLRQQEQALKLRPD 343
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR+IDH+RNS S +D + VL++DEADR+LE GF E++E++ L P +RQT+LF
Sbjct: 344 IVIATPGRIIDHIRNSASFSVDSVEVLVIDEADRMLEDGFQDELNEIMSLIPSKRQTLLF 403
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK- 240
SAT+ + +LI LSL KP+R+ DP + + LT+E VR+R+ RE + A+L L K
Sbjct: 404 SATMNSRIKQLISLSLKKPVRIMIDPPKQAANKLTQEFVRLRK-REHLKPALLYHLLRKL 462
Query: 241 --TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
T ++++F K+ AHRL+++ GL +KA ELHG+LTQ QRL+++ F+ V L+
Sbjct: 463 DSTGQKRIVVFVARKEVAHRLRVILGLLGMKAGELHGSLTQEQRLQSVNNFKSLDVPVLV 522
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN--DRSLLK 356
TD+A+RGLDI ++ VINY P+ Y+HRVGRTARAGREG +VT V ++ +RS++K
Sbjct: 523 CTDLASRGLDIPKIEVVINYDMPKTYEIYLHRVGRTARAGREGKSVTLVGESTQERSIVK 582
Query: 357 -AIAKRAGSKLK----SRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEAT 411
AI GSK R+V + + + K+++ ED + IL+EE++E+ + +AEME
Sbjct: 583 DAIKSVDGSKGSGRACGRVVDWKQVEEIHKLVQAKEDVIGEILEEEKQEKEILRAEMEIR 642
Query: 412 KAENMIAHKEEIFARPKRTWFVTEKEKK 439
K ENM+ KEEI ARP+RTWF +E EKK
Sbjct: 643 KGENMLKFKEEINARPRRTWFQSESEKK 670
>gi|307173483|gb|EFN64393.1| Probable ATP-dependent RNA helicase DDX27 [Camponotus floridanus]
Length = 694
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/440 (50%), Positives = 314/440 (71%), Gaps = 4/440 (0%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
++NLSRPLL+A A+ + +PTPIQAA IP+AL GRDICG A TG+GKTAA+ LPTLERL
Sbjct: 117 YQMNLSRPLLKAITAMNFIQPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLPTLERL 176
Query: 61 LYRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
LYRP PA+ RVL+L PTREL VQV+ + +++ QFT + L VGGL K+QE+ LR
Sbjct: 177 LYRPLDGPAVSRVLVLVPTRELGVQVYQVTKQLTQFTTVEVGLSVGGLDVKVQESVLRKN 236
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
PDIV+ATPGR+IDHL N+ + L+++ VLILDEADR+L+ F+ ++ +V+ C + +QT+
Sbjct: 237 PDIVIATPGRLIDHLNNAPTFSLNNIEVLILDEADRMLDEYFAEQMKYIVKQCARTKQTI 296
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
LFSAT+TE+V +L +SL P+++ D + L +E +RIR+ RE ++EA+L +L
Sbjct: 297 LFSATMTEEVKDLAAVSLNNPIKIFVDSNQDVAFNLRQEFIRIRKEREGDREAILAALVC 356
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+TF +IF TK+ AHRL IL GL LK ELHGNLTQ QRLE L+ F+++ +D L+A
Sbjct: 357 RTFHDHTMIFVQTKKQAHRLHILLGLLGLKVGELHGNLTQPQRLENLQKFKEEEIDILLA 416
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVAARGLDI GV+TVIN+ P L Y+HRVGRTARAGR G +V+ + +R L+K I
Sbjct: 417 TDVAARGLDISGVKTVINFMMPATLQHYIHRVGRTARAGRGGVSVSLAGEQERFLVKEII 476
Query: 360 KRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
K+A + +K+RI+ I K++K ++ +E V ILQEE+ ++ L K E +A + E ++
Sbjct: 477 KQAKNPIKNRIIPPDIIEKYNKKLQSLEVDVERILQEEKNDKELAKIENQANRVEKLLKD 536
Query: 420 KEEIFARPKRTWFVTEKEKK 439
++ + +R+WF T+KE+K
Sbjct: 537 ED---TKDQRSWFQTKKERK 553
>gi|256272311|gb|EEU07295.1| Drs1p [Saccharomyces cerevisiae JAY291]
Length = 751
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 219/450 (48%), Positives = 310/450 (68%), Gaps = 14/450 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRP+L+ +LGY KP+PIQ+A IP+AL G+DI A+TGSGKTAAF +P +ERLLY
Sbjct: 235 LSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 294
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPD 121
+P +I + RV++L PTRELA+QV + ++IA+F + I L VGGL+ + QE L+S PD
Sbjct: 295 KPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPD 354
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR IDH+RNS S ++D + +L++DEADR+LE GF E++E++ L P RQ +LF
Sbjct: 355 IVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLLF 414
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK- 240
SAT+ + L+ LSL KP+R+ DP K + LT+E VRIR+ R+ + A+L +L K
Sbjct: 415 SATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRK-RDHLKPALLFNLIRKL 473
Query: 241 --TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
T ++++F K+ AHRL+I+ GL + ELHG+LTQ QRL+++ F+ V LI
Sbjct: 474 DPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLI 533
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLLK 356
TD+A+RGLDI ++ VINY P+ Y+HRVGRTARAGREG +VTFV + DRS+++
Sbjct: 534 CTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVR 593
Query: 357 AIAKRA-------GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 409
A K K R V I + +K++E M+D + IL EE+EE+ + +AEM+
Sbjct: 594 AAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMDDTIEDILVEEKEEKEILRAEMQ 653
Query: 410 ATKAENMIAHKEEIFARPKRTWFVTEKEKK 439
K ENM+ HK+EI ARP+RTWF +E +KK
Sbjct: 654 LRKGENMLKHKKEIQARPRRTWFQSESDKK 683
>gi|171656|gb|AAA34666.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae]
Length = 722
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 219/450 (48%), Positives = 309/450 (68%), Gaps = 14/450 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRP+L+ +LGY KP+PIQ+A IP+AL G+DI A+TGSGKTAAF +P +ERLLY
Sbjct: 206 LSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 265
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPD 121
+P +I + RV++L PTRELA+QV + ++IA+F + I L VGGL+ + QE L+S PD
Sbjct: 266 KPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPD 325
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR IDH+RNS S ++D + +L++DEADR+LE GF E++E++ L P RQ +LF
Sbjct: 326 IVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLLF 385
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK- 240
SAT+ + L+ LSL KP+R+ DP K + LT+E VRIR+ R+ + A+L +L K
Sbjct: 386 SATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRK-RDHLKPALLFNLIRKL 444
Query: 241 --TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
T ++++F K+ AHRL+I+ GL + ELHG+LTQ QRL+++ F+ V LI
Sbjct: 445 DPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLI 504
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLLK 356
TD+A+RGLDI ++ VINY P+ Y+HRVGRTARAGREG +VTFV + DRS+++
Sbjct: 505 CTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVR 564
Query: 357 AIAKRA-------GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 409
A K K R V I + +K++E M D + IL EE+EE+ + +AEM+
Sbjct: 565 AAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMNDTIEDILVEEKEEKEILRAEMQ 624
Query: 410 ATKAENMIAHKEEIFARPKRTWFVTEKEKK 439
K ENM+ HK+EI ARP+RTWF +E +KK
Sbjct: 625 LRKGENMLKHKKEIQARPRRTWFQSESDKK 654
>gi|392297967|gb|EIW09066.1| Drs1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 748
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 219/450 (48%), Positives = 309/450 (68%), Gaps = 14/450 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRP+L+ +LGY KP+PIQ+A IP+AL G+DI A+TGSGKTAAF +P +ERLLY
Sbjct: 232 LSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 291
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPD 121
+P +I + RV++L PTRELA+QV + ++IA+F + I L VGGL+ + QE L+S PD
Sbjct: 292 KPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPD 351
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR IDH+RNS S ++D + +L++DEADR+LE GF E++E++ L P RQ +LF
Sbjct: 352 IVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLLF 411
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK- 240
SAT+ + L+ LSL KP+R+ DP K + LT+E VRIR+ R+ + A+L +L K
Sbjct: 412 SATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRK-RDHLKPALLFNLIRKL 470
Query: 241 --TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
T ++++F K+ AHRL+I+ GL + ELHG+LTQ QRL+++ F+ V LI
Sbjct: 471 DPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLI 530
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLLK 356
TD+A+RGLDI ++ VINY P+ Y+HRVGRTARAGREG +VTFV + DRS+++
Sbjct: 531 CTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVR 590
Query: 357 AIAKRA-------GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 409
A K K R V I + +K++E M D + IL EE+EE+ + +AEM+
Sbjct: 591 AAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMNDTIEDILVEEKEEKEILRAEMQ 650
Query: 410 ATKAENMIAHKEEIFARPKRTWFVTEKEKK 439
K ENM+ HK+EI ARP+RTWF +E +KK
Sbjct: 651 LRKGENMLKHKKEIQARPRRTWFQSESDKK 680
>gi|349579719|dbj|GAA24880.1| K7_Drs1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 756
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 219/450 (48%), Positives = 309/450 (68%), Gaps = 14/450 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRP+L+ +LGY KP+PIQ+A IP+AL G+DI A+TGSGKTAAF +P +ERLLY
Sbjct: 240 LSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 299
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPD 121
+P +I + RV++L PTRELA+QV + ++IA+F + I L VGGL+ + QE L+S PD
Sbjct: 300 KPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPD 359
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR IDH+RNS S ++D + +L++DEADR+LE GF E++E++ L P RQ +LF
Sbjct: 360 IVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLLF 419
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK- 240
SAT+ + L+ LSL KP+R+ DP K + LT+E VRIR+ R+ + A+L +L K
Sbjct: 420 SATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRK-RDHLKPALLFNLIRKL 478
Query: 241 --TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
T ++++F K+ AHRL+I+ GL + ELHG+LTQ QRL+++ F+ V LI
Sbjct: 479 DPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLI 538
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLLK 356
TD+A+RGLDI ++ VINY P+ Y+HRVGRTARAGREG +VTFV + DRS+++
Sbjct: 539 CTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVR 598
Query: 357 AIAKRA-------GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 409
A K K R V I + +K++E M D + IL EE+EE+ + +AEM+
Sbjct: 599 AAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMNDTIEDILVEEKEEKEILRAEMQ 658
Query: 410 ATKAENMIAHKEEIFARPKRTWFVTEKEKK 439
K ENM+ HK+EI ARP+RTWF +E +KK
Sbjct: 659 LRKGENMLKHKKEIQARPRRTWFQSESDKK 688
>gi|160380652|sp|A7A0P8.1|DRS1_YEAS7 RecName: Full=ATP-dependent RNA helicase DRS1; AltName:
Full=Deficiency of ribosomal subunits protein 1
gi|151941161|gb|EDN59539.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|190406035|gb|EDV09302.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
gi|207343227|gb|EDZ70754.1| YLL008Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 754
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 219/450 (48%), Positives = 309/450 (68%), Gaps = 14/450 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRP+L+ +LGY KP+PIQ+A IP+AL G+DI A+TGSGKTAAF +P +ERLLY
Sbjct: 238 LSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 297
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPD 121
+P +I + RV++L PTRELA+QV + ++IA+F + I L VGGL+ + QE L+S PD
Sbjct: 298 KPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPD 357
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR IDH+RNS S ++D + +L++DEADR+LE GF E++E++ L P RQ +LF
Sbjct: 358 IVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLLF 417
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK- 240
SAT+ + L+ LSL KP+R+ DP K + LT+E VRIR+ R+ + A+L +L K
Sbjct: 418 SATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRK-RDHLKPALLFNLIRKL 476
Query: 241 --TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
T ++++F K+ AHRL+I+ GL + ELHG+LTQ QRL+++ F+ V LI
Sbjct: 477 DPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLI 536
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLLK 356
TD+A+RGLDI ++ VINY P+ Y+HRVGRTARAGREG +VTFV + DRS+++
Sbjct: 537 CTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVR 596
Query: 357 AIAKRA-------GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 409
A K K R V I + +K++E M D + IL EE+EE+ + +AEM+
Sbjct: 597 AAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMNDTIEDILVEEKEEKEILRAEMQ 656
Query: 410 ATKAENMIAHKEEIFARPKRTWFVTEKEKK 439
K ENM+ HK+EI ARP+RTWF +E +KK
Sbjct: 657 LRKGENMLKHKKEIQARPRRTWFQSESDKK 686
>gi|6323021|ref|NP_013093.1| Drs1p [Saccharomyces cerevisiae S288c]
gi|1706521|sp|P32892.2|DRS1_YEAST RecName: Full=ATP-dependent RNA helicase DRS1; AltName:
Full=Deficiency of ribosomal subunits protein 1
gi|1360171|emb|CAA97452.1| DRS1 [Saccharomyces cerevisiae]
gi|1495215|emb|CAA62783.1| L1345/DRS1 protein [Saccharomyces cerevisiae]
gi|285813414|tpg|DAA09310.1| TPA: Drs1p [Saccharomyces cerevisiae S288c]
Length = 752
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 219/450 (48%), Positives = 309/450 (68%), Gaps = 14/450 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRP+L+ +LGY KP+PIQ+A IP+AL G+DI A+TGSGKTAAF +P +ERLLY
Sbjct: 236 LSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 295
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPD 121
+P +I + RV++L PTRELA+QV + ++IA+F + I L VGGL+ + QE L+S PD
Sbjct: 296 KPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPD 355
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR IDH+RNS S ++D + +L++DEADR+LE GF E++E++ L P RQ +LF
Sbjct: 356 IVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLLF 415
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK- 240
SAT+ + L+ LSL KP+R+ DP K + LT+E VRIR+ R+ + A+L +L K
Sbjct: 416 SATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRK-RDHLKPALLFNLIRKL 474
Query: 241 --TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
T ++++F K+ AHRL+I+ GL + ELHG+LTQ QRL+++ F+ V LI
Sbjct: 475 DPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLI 534
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLLK 356
TD+A+RGLDI ++ VINY P+ Y+HRVGRTARAGREG +VTFV + DRS+++
Sbjct: 535 CTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVR 594
Query: 357 AIAKRA-------GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 409
A K K R V I + +K++E M D + IL EE+EE+ + +AEM+
Sbjct: 595 AAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMNDTIEDILVEEKEEKEILRAEMQ 654
Query: 410 ATKAENMIAHKEEIFARPKRTWFVTEKEKK 439
K ENM+ HK+EI ARP+RTWF +E +KK
Sbjct: 655 LRKGENMLKHKKEIQARPRRTWFQSESDKK 684
>gi|259147982|emb|CAY81231.1| Drs1p [Saccharomyces cerevisiae EC1118]
Length = 754
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 219/450 (48%), Positives = 309/450 (68%), Gaps = 14/450 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRP+L+ +LGY KP+PIQ+A IP+AL G+DI A+TGSGKTAAF +P +ERLLY
Sbjct: 238 LSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 297
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPD 121
+P +I + RV++L PTRELA+QV + ++IA+F + I L VGGL+ + QE L+S PD
Sbjct: 298 KPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPD 357
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR IDH+RNS S ++D + +L++DEADR+LE GF E++E++ L P RQ +LF
Sbjct: 358 IVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLLF 417
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK- 240
SAT+ + L+ LSL KP+R+ DP K + LT+E VRIR+ R+ + A+L +L K
Sbjct: 418 SATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRK-RDHLKPALLFNLIRKL 476
Query: 241 --TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
T ++++F K+ AHRL+I+ GL + ELHG+LTQ QRL+++ F+ V LI
Sbjct: 477 DPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLI 536
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLLK 356
TD+A+RGLDI ++ VINY P+ Y+HRVGRTARAGREG +VTFV + DRS+++
Sbjct: 537 CTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVR 596
Query: 357 AIAKRA-------GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 409
A K K R V I + +K++E M D + IL EE+EE+ + +AEM+
Sbjct: 597 AAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVEPMNDTIEDILVEEKEEKEILRAEMQ 656
Query: 410 ATKAENMIAHKEEIFARPKRTWFVTEKEKK 439
K ENM+ HK+EI ARP+RTWF +E +KK
Sbjct: 657 LRKGENMLKHKKEIQARPRRTWFQSESDKK 686
>gi|444318547|ref|XP_004179931.1| hypothetical protein TBLA_0C06160 [Tetrapisispora blattae CBS 6284]
gi|387512972|emb|CCH60412.1| hypothetical protein TBLA_0C06160 [Tetrapisispora blattae CBS 6284]
Length = 757
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 216/450 (48%), Positives = 312/450 (69%), Gaps = 12/450 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRP+L+ ALGYSKP+PIQ+A IP+AL G+DI A+TGSGKTAAF +P +ERLLY
Sbjct: 241 LSLSRPVLKGLAALGYSKPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 300
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD-IRCCLVVGGLSTKMQETALRSMPD 121
+P ++ + RV++LTPTRELA+QV + +K+ +F + + L VGGL+ + QE L+S PD
Sbjct: 301 KPAKVTSTRVIVLTPTRELAIQVSDVGKKVGKFVNGVTFGLAVGGLNLRQQEQQLKSRPD 360
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IVVATPGR IDH+RNS S ++D + +L++DEADR+LE GF E++E++ L P +RQT+LF
Sbjct: 361 IVVATPGRFIDHIRNSASFNVDSVEILVIDEADRMLEDGFQDELNEIMSLLPSKRQTLLF 420
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK- 240
SAT+ + +LI LSL KP+R+ DP + + L +E VRIR+ R+ + A+L +L K
Sbjct: 421 SATMNSKIKQLISLSLKKPVRIMIDPPKQAAAKLVQEFVRIRK-RDNLKPALLYTLIRKL 479
Query: 241 --TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
++++F K+ AH+L+I+ GL ELHG+LTQ QRL+++ F+ V L+
Sbjct: 480 DGAGQKRIVVFVARKETAHKLRIILGLLGQSVGELHGSLTQEQRLDSVNKFKSLEVPVLL 539
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND------R 352
TD+A+RGLDI ++ VINY P+ Y+HRVGRTARAGREG +VTFV + R
Sbjct: 540 CTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGEASQDRVIVR 599
Query: 353 SLLKAIAKRAG-SKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEAT 411
S ++++ + G K R V + + +K+IE+M+ + IL EE++E+ + +AEME
Sbjct: 600 SAIRSVEENIGRGKALGRNVDWNQVEETNKLIEKMDTTIDEILDEEKQEKEIIRAEMELK 659
Query: 412 KAENMIAHKEEIFARPKRTWFVTEKEKKLA 441
K+EN++ HK EI +RPKRTWF TE EKK A
Sbjct: 660 KSENLLKHKSEIQSRPKRTWFQTETEKKNA 689
>gi|323303947|gb|EGA57727.1| Drs1p [Saccharomyces cerevisiae FostersB]
Length = 755
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 219/451 (48%), Positives = 310/451 (68%), Gaps = 16/451 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRP+L+ +LGY KP+PIQ+A IP+AL G+DI A+TGSGKTAAF +P +ERLLY
Sbjct: 239 LSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 298
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPD 121
+P +I + RV++L PTRELA+QV + ++IA+F + I L VGGL+ + QE L+S PD
Sbjct: 299 KPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPD 358
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR IDH+RNS S ++D + +L++DEADR+LE GF E++E++ L P RQ +LF
Sbjct: 359 IVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLLF 418
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK- 240
SAT+ + L+ LSL KP+R+ DP K + LT+E VRIR+ R+ + A+L +L K
Sbjct: 419 SATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRK-RDHLKPALLFNLIRKL 477
Query: 241 --TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
T ++++F K+ AHRL+I+ GL + ELHG+LTQ QRL+++ F+ V LI
Sbjct: 478 DPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLI 537
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLLK 356
TD+A+RGLDI ++ VINY P+ Y+HRVGRTARAGREG +VTFV + DRS+++
Sbjct: 538 CTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVR 597
Query: 357 AIAKRA--------GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEM 408
A K G L + Q I + +K++E M D + IL EE+EE+ + +AEM
Sbjct: 598 AAIKSVEENKSLTQGKALGXNVDWVQ-IEETNKLVESMNDTIEDILVEEKEEKEILRAEM 656
Query: 409 EATKAENMIAHKEEIFARPKRTWFVTEKEKK 439
+ K ENM+ HK+EI ARP+RTWF +E +KK
Sbjct: 657 QLRKGENMLKHKKEIQARPRRTWFQSESDKK 687
>gi|350416437|ref|XP_003490948.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Bombus
impatiens]
Length = 741
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 274/617 (44%), Positives = 387/617 (62%), Gaps = 53/617 (8%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+ + PTPIQAA IP+AL GRDICG A TG+GKTAA+ LPTLERLL
Sbjct: 162 QMNLSRPLLKAITAMNFVHPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLPTLERLL 221
Query: 62 YRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
YRP P+I RVL+L PTREL VQV+ + ++++QFT I L VGGL K+QE LR P
Sbjct: 222 YRPLDGPSISRVLVLVPTRELGVQVYQVTKQLSQFTTIEVGLSVGGLDVKVQEAVLRKNP 281
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ATPGR+IDHLRN+ S LD + VLILDEADR+L+ F+ ++ +V+ C + RQT+L
Sbjct: 282 DIVIATPGRLIDHLRNTPSFSLDSIEVLILDEADRMLDEYFAEQMKYIVKQCSRSRQTIL 341
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE+V +L +SL KP+++ D + L +E +RIR+ RE ++EA+L +L +
Sbjct: 342 FSATMTEEVKDLAAVSLDKPVKVFVDSNQDVAFNLRQEFIRIRKEREGDREAILAALICR 401
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF V++F TK+ AHRL IL GL +K ELHGNLTQ QRLE L F+ + +D L+AT
Sbjct: 402 TFHDHVMVFVQTKKQAHRLHILLGLLGIKVGELHGNLTQPQRLENLTKFKNEEIDILLAT 461
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI GV+TVIN+ P + Y+HRVGRTARAGR G +V+ + +RSL+K I K
Sbjct: 462 DVAARGLDISGVKTVINFVMPVTMQHYIHRVGRTARAGRVGVSVSLAGEQERSLVKEIIK 521
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
A + +K+RI+ I K+SK ++ +E V IL+EER ER L K E +A +AE ++ K
Sbjct: 522 NAKNPVKNRIILPDIIDKYSKKLQSLETDVNKILEEERNERELAKIENQANRAEKLL--K 579
Query: 421 EEIFARPKRTWFVTEKEKKLAVK----ADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKR 476
E +RTWF T+KE+K + +K + KG+ E ++ I+EK+KR
Sbjct: 580 NESNKGTQRTWFQTQKERKEEKEKLSLTEKQNTNKGQKQNKEPSNI-------IEEKKKR 632
Query: 477 EREKNLPRKERRKLEAAREMLEDEDQVDKLQGSGKDKKEKAGISMVDLAYRRAKAVKAKQ 536
+E P++E + A +E+ EK LA R+ K K +
Sbjct: 633 SKE---PKQETAEDRAKKEL------------------EKIAAYQARLAKRKNKQNKIRT 671
Query: 537 KALDAGKIVKSNGK------KSKHSSQESNSRAKEMRELFHS-----DMSEKKQKRTGGI 585
++ K SN K KS ++ +N+ K ++++ + + S++K ++ I
Sbjct: 672 -VVENDKF-SSNRKASLKRPKSSFAADLTNTSKKAVKKMRYEANVKKNQSKRKSAKSLNI 729
Query: 586 GKKPKHSFKSKSRYKRR 602
GKK S+S +KRR
Sbjct: 730 GKK-----DSRSNFKRR 741
>gi|170044624|ref|XP_001849941.1| ATP-dependent RNA helicase DRS1 [Culex quinquefasciatus]
gi|167867695|gb|EDS31078.1| ATP-dependent RNA helicase DRS1 [Culex quinquefasciatus]
Length = 807
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 214/450 (47%), Positives = 315/450 (70%), Gaps = 9/450 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPL++A LGY PTPIQAA IP+AL GRD+CG A TG+GKTAA+ LPTLERLL
Sbjct: 190 QMNLSRPLMKAIGFLGYIYPTPIQAATIPIALMGRDVCGCAATGTGKTAAYMLPTLERLL 249
Query: 62 YRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
Y+P A+ RVL+L PTREL QV+ + +++ Q+T I + +GGL K QE LR+ P
Sbjct: 250 YKPSAAQAVTRVLVLVPTRELGAQVYQVTKQLTQYTSIEVGIAIGGLDVKAQEAVLRTNP 309
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ATPGR+IDH++N+ S LD + VLILDEADR+L+ F+ ++ E+++ C K RQTML
Sbjct: 310 DIVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRMLDEYFAEQMKEIIQSCSKSRQTML 369
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T+ V +L +SL+KP+++ + + L +E +RIR R+ ++E +L +L +
Sbjct: 370 FSATMTDQVKDLAAVSLSKPVKVFVNNNQTVAFNLRQEFIRIRESRDADREPILAALICR 429
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF ++F TK+ AHRL+IL GL +KA ELHG+LTQ+QRLE+L+ F+ + +D L+AT
Sbjct: 430 TFHDHCMVFVQTKKTAHRLRILLGLLGVKAGELHGDLTQSQRLESLKQFKDEQIDVLVAT 489
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI GV+TVIN+ P + Y+HRVGRTARAG+ G +V+ + +R ++K I K
Sbjct: 490 DVAARGLDISGVKTVINFVMPATMEHYIHRVGRTARAGKAGVSVSLAGELERKIVKDIIK 549
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
A + +K+RI+ + + K+ K ++ +E+++ +LQEE E++LR+ E + +K EN +
Sbjct: 550 NAVNPVKNRIIPNEIVEKYRKKVQALEEEIENVLQEEHAEKLLRQTEQQLSKTENKL--- 606
Query: 421 EEIFARPKRTWFVTEKEK-----KLAVKAD 445
+ I P R WF E+ +L++K D
Sbjct: 607 KGISNGPSREWFQNSHERHQEKERLSIKTD 636
>gi|312375048|gb|EFR22493.1| hypothetical protein AND_15188 [Anopheles darlingi]
Length = 879
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 216/443 (48%), Positives = 310/443 (69%), Gaps = 8/443 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+++LSRPL++A ALGY PTPIQA+ IP+AL GRDICG A TG+GKTAA+ LPTLERLL
Sbjct: 212 QMDLSRPLMKAIGALGYIYPTPIQASTIPIALLGRDICGCAATGTGKTAAYMLPTLERLL 271
Query: 62 YRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
Y+P A+ RVL+L PTREL QV+ + +++ QFT++ + +GGL K QE LR+ P
Sbjct: 272 YKPNAAQAVTRVLVLVPTRELGAQVYQVAKQLTQFTNVEVGIAIGGLDVKAQEAVLRTNP 331
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ATPGR+IDH++N+ S LD + +LILDEADR+L+ F+ ++ E++R C RQTML
Sbjct: 332 DIVIATPGRLIDHIKNTPSFSLDSIEILILDEADRMLDEYFAEQMKEIIRSCSATRQTML 391
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE+V +L +SL KP+++ + + L +E +R+R RE ++E +L +L +
Sbjct: 392 FSATMTEEVKDLAAVSLKKPVKIFVNNNQTVAFNLRQEFIRVREGREADREPILAALVCR 451
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF ++F TK+ AHRL+IL GL +KA ELHG+LTQAQRLE+L+ F+ + +D L+AT
Sbjct: 452 TFHDHCMVFVQTKRTAHRLRILLGLLGVKAGELHGDLTQAQRLESLKQFKDEQIDVLVAT 511
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI GV TVIN+ P L Y+HRVGRTARAGR G +V+ + +R ++K I K
Sbjct: 512 DVAARGLDISGVTTVINFVMPATLEHYIHRVGRTARAGRAGVSVSLAGELERRIVKDIVK 571
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAE----NM 416
A + +K+RI+ + I K+ + +E ++ +L EER E++LR+AE + T E +
Sbjct: 572 NAVNPVKNRIIPGEIIDKYRAKVAALESEIDKVLAEERAEKMLRQAEQQLTSTERKLKGI 631
Query: 417 IAHKEEIFARPKRTWFVTEKEKK 439
HK + P R WF +++EK+
Sbjct: 632 APHKTD---GPPREWFQSQREKR 651
>gi|291001041|ref|XP_002683087.1| DEAD-box ATP-dependent RNA helicase [Naegleria gruberi]
gi|284096716|gb|EFC50343.1| DEAD-box ATP-dependent RNA helicase [Naegleria gruberi]
Length = 887
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/443 (48%), Positives = 305/443 (68%), Gaps = 5/443 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A GY PTPIQ+ CIPL L GRDIC SA+TGSGKTAAF LPTLERLL
Sbjct: 273 DMNLSRPLLKAIYEKGYEHPTPIQSRCIPLLLKGRDICASAMTGSGKTAAFILPTLERLL 332
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGG-LSTKMQETALRSMP 120
YR + V+ L PTRELA Q + Q+TDIRCCL+ GG L + Q L+S P
Sbjct: 333 YRDRSRKETLVVALLPTRELAAQCYEDCSHFLQYTDIRCCLITGGNLKIQKQIQVLQSKP 392
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
+I++ATPGR++DHL NS + LD++ VLILDEADRLLELGF +I ++ P RQTML
Sbjct: 393 EIIIATPGRVVDHLLNSPNFRLDEVEVLILDEADRLLELGFEPQIKTILDHIPTARQTML 452
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREV-NQEAVLLSLCS 239
FSAT+T+D+++L+KLSL P+R+S D S LT+E +++ + ++A+LLSLC+
Sbjct: 453 FSATMTDDIEQLVKLSLKNPIRVSCDSRTGVASGLTQEFIKLADDENIIMKQAILLSLCT 512
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
++F S+VIIF TK +LK+L L LK +EL +LTQA RL+ L F DFL+
Sbjct: 513 RSFPSEVIIFCNTKSMVRKLKMLLFLKGLKVSELSSSLTQAVRLKELYKFASHETDFLVC 572
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI- 358
TDVA+RGLDI GV+TVIN+ P +L +Y+HRVGRTARAG G AV+ +++ ++L+ I
Sbjct: 573 TDVASRGLDIKGVKTVINFDMPLNLKTYIHRVGRTARAGASGVAVSMSSESSIAILRKIV 632
Query: 359 --AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENM 416
+K+ G ++ R++ +SI W+ IE+M+ Q+ + Q+ R E +++AEM A K EN+
Sbjct: 633 RHSKKKGQSVQQRVIPTESIEFWTDKIEEMKPQLKELEQQLRMEEEMQQAEMLAAKNENI 692
Query: 417 IAHKEEIFARPKRTWFVTEKEKK 439
+E+I +RP++ W +++ +++
Sbjct: 693 EEFREDIMSRPRKEWIMSKAQRE 715
>gi|367007110|ref|XP_003688285.1| hypothetical protein TPHA_0N00700 [Tetrapisispora phaffii CBS 4417]
gi|357526593|emb|CCE65851.1| hypothetical protein TPHA_0N00700 [Tetrapisispora phaffii CBS 4417]
Length = 755
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/450 (47%), Positives = 315/450 (70%), Gaps = 12/450 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRP+L+ LGY+KP+PIQ+A IP+ L G+DI A+TGSGKTAAF +P +ERLLY
Sbjct: 225 LSLSRPVLKGLSDLGYTKPSPIQSATIPIGLLGKDIIAGAVTGSGKTAAFMIPIIERLLY 284
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD-IRCCLVVGGLSTKMQETALRSMPD 121
+P I + RV++LTPTRELA+QV + ++I ++ + + L VGGL+ + QE L++ PD
Sbjct: 285 KPANIASTRVIVLTPTRELAIQVSDVGKRIGKYVNGLTFGLAVGGLNLRQQEQELKTRPD 344
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+V+ATPGR IDH+RNS S ++D + VL++DEADR+LE GF E++E++ L P +RQT+LF
Sbjct: 345 VVIATPGRFIDHIRNSASFNVDSVEVLVIDEADRMLEDGFQEELNEIMSLLPTKRQTLLF 404
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ + +LI LSL +P+R+ +P + + LT+E VRIR+ R++ + A+L L K
Sbjct: 405 SATMNSKIKQLISLSLRRPVRIMINPPKQAAARLTQEFVRIRK-RDLLKPALLYYLIRKL 463
Query: 242 FTS---KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+S ++++F K+ AHRL+I+ GL +K AELHG+LTQ QRL+++ F+ V LI
Sbjct: 464 DSSSQKRIVVFVSRKEMAHRLRIIMGLLGMKVAELHGSLTQEQRLQSVNQFKSLEVPVLI 523
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLLK 356
TD+A+RGLDI ++ VINY P+ Y+HRVGRTARAGREG +VTFV + DRS+++
Sbjct: 524 CTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVR 583
Query: 357 AIAKRA-----GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEAT 411
+ K A +++ R V + + SK+I+ + + IL EE++E+ + +AEME
Sbjct: 584 SAIKSAEEGENQNQVLGRNVEWNKVDEVSKLIDSNGETIDDILDEEKQEKEILRAEMELR 643
Query: 412 KAENMIAHKEEIFARPKRTWFVTEKEKKLA 441
K EN++ HK EI ARP+RTWF TE EKK A
Sbjct: 644 KGENLMKHKTEIQARPRRTWFQTEDEKKNA 673
>gi|328778605|ref|XP_001122266.2| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Apis
mellifera]
Length = 739
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 232/439 (52%), Positives = 311/439 (70%), Gaps = 3/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+ + PTPIQAA IP+AL GRDICG A TG+GKTAA+ LPTLERLL
Sbjct: 160 QMNLSRPLLKAITAMNFVHPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLPTLERLL 219
Query: 62 YRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
YRP PAI RVL+L PTREL VQV+ + ++++QFT I L VGGL K QE LR P
Sbjct: 220 YRPLDGPAISRVLVLVPTRELGVQVYQVTKQLSQFTTIEVGLSVGGLDVKAQEAVLRRNP 279
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ATPGR+IDHL+N+ + LD + VLILDEADR+L+ F+ ++ +V+ C + RQT+L
Sbjct: 280 DIVIATPGRLIDHLKNTPTFSLDSIEVLILDEADRMLDEYFAEQMKYIVKQCSRSRQTIL 339
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE+V +L +SL KP+++ D + L +E +RIR+ RE ++EA+L +L +
Sbjct: 340 FSATMTEEVKDLAAVSLNKPVKVFIDSNQDVAFNLRQEFIRIRKEREGDREAILAALICR 399
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF V++F TK+ AHRL IL GL +K ELHGNLTQ QRLE L F+ + +D L+AT
Sbjct: 400 TFHDHVMVFVQTKKQAHRLHILLGLLGIKVGELHGNLTQPQRLENLTKFKNEEIDILLAT 459
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI GV+TVIN+ P + Y+HRVGRTARAGR G +V+ + +RSL+K I K
Sbjct: 460 DVAARGLDISGVKTVINFVMPATMQHYIHRVGRTARAGRVGVSVSLAGEQERSLVKEIIK 519
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
A + +K+RI+ I K+ K ++ +E V IL+EER ER L K E +A +AE ++ K
Sbjct: 520 NAKNPVKNRIIPSDIIDKYYKKLQSLEPDVEKILEEERNERELAKIENQANRAEKLL--K 577
Query: 421 EEIFARPKRTWFVTEKEKK 439
E +RTWF T+KE+K
Sbjct: 578 NESNKNIQRTWFQTQKERK 596
>gi|242007312|ref|XP_002424485.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212507903|gb|EEB11747.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 669
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 220/439 (50%), Positives = 308/439 (70%), Gaps = 2/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPL++A A+ +S PTPIQ A IP+AL GRDICG A TG+GKTAA+ LP LERLL
Sbjct: 159 QMNLSRPLMKAIAAMNFSHPTPIQCAAIPVALLGRDICGCAATGTGKTAAYMLPILERLL 218
Query: 62 YRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
Y+P+ +I RVL+L PTREL VQV + +++++FT I L VGGL K+QE LR P
Sbjct: 219 YKPQGSLSITRVLVLVPTRELGVQVIQVAKQLSKFTTIEIGLAVGGLDVKVQEAFLRKQP 278
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ATPGR+IDHL+NS+ LD + +L+LDEADR+L+ F+ ++ E+VR C + RQTML
Sbjct: 279 DIVIATPGRLIDHLKNSLGFSLDSIEILVLDEADRMLDEYFAEQMKEIVRQCSRTRQTML 338
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T V++L +SL+ P+++ D + + L +E +RIR+ RE ++EAVL +L +
Sbjct: 339 FSATMTTAVEDLASVSLSNPVKIFVDSNQSVTNNLRQEFIRIRKGREGDKEAVLAALVRR 398
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF + IIF TK AH+L+IL G +KA ELHGNL Q +RL+ L+ F+ +D L+AT
Sbjct: 399 TFRANCIIFVATKSQAHKLRILLGFLNMKAGELHGNLRQPERLDTLKRFKNGELDILVAT 458
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI GV+TVINY P Y+HRVGRTARAGR G +V+ +++R L+K I K
Sbjct: 459 DVAARGLDISGVKTVINYDLPMTFEHYIHRVGRTARAGRSGISVSLACESERKLVKEIVK 518
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
+A +KSRI+ Q + K+ K +E++ + V +L+EE EER+L+KAEM+ E +
Sbjct: 519 KAERPVKSRIIPPQILLKYKKKVEELGEDVDKVLKEELEERLLQKAEMQMNAMEKKLKSN 578
Query: 421 EEIFARPK-RTWFVTEKEK 438
+ K R WF T+K++
Sbjct: 579 DNNNDYDKTREWFQTKKQR 597
>gi|158514833|sp|A3LSN3.3|DRS1_PICST RecName: Full=ATP-dependent RNA helicase DRS1
Length = 741
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 214/449 (47%), Positives = 317/449 (70%), Gaps = 13/449 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LSRP+L+ LGY+KP+PIQ+A IP+AL GRDI A+TGSGKTAA+ +P +ERLLY
Sbjct: 227 LQLSRPVLKGLSQLGYTKPSPIQSASIPIALLGRDIVAGAVTGSGKTAAYMIPIIERLLY 286
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPD 121
+P ++ + RV++LTPTRELA+QV + +KI QF ++ L VGGL+ + QE L+S PD
Sbjct: 287 KPSKVASTRVIVLTPTRELAIQVGDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLKSRPD 346
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK-RRQTML 180
+V+ATPGR+IDH+RNS S +D L VL++DEADR+L+ GF E+ E++ L PK +RQT+L
Sbjct: 347 VVIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQVELTEILSLIPKNKRQTLL 406
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+ + +LI+LSL +P+R+ DP + LT+E VRIR+ R+ + A+L L K
Sbjct: 407 FSATMNTKIQDLIQLSLQRPVRIMIDPPKTAATKLTQEFVRIRK-RDHLKPALLFQLLKK 465
Query: 241 ---TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
S++++F K++AH+L+I+ GL +K +ELHG+LTQ QRL + F+K V L
Sbjct: 466 LDPAQQSRIVVFVSRKESAHKLRIVLGLLGMKVSELHGSLTQEQRLNNVNDFKKLIVPVL 525
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLL 355
I TD+AARGLDI ++ VINY P+ Y+HRVGRTARAGR+G +++FV + +DR+++
Sbjct: 526 ICTDLAARGLDIPKIEIVINYDMPKSHEVYLHRVGRTARAGRDGTSISFVGESTSDRNIV 585
Query: 356 K-AIAKRAGSKLKSRIVAEQ----SITKWSKIIEQMEDQVAAILQEEREERILRKAEMEA 410
K AI G ++K + V+ + + +KI+E ++ + +L EE++ + + +AEM+
Sbjct: 586 KDAIKSLEGGEVKGKAVSRNIDWVDVEQLNKIVESKQEIIEEVLDEEKQAKEILQAEMQL 645
Query: 411 TKAENMIAHKEEIFARPKRTWFVTEKEKK 439
KA NM+ H++EI +RPKRTWF +EK+KK
Sbjct: 646 AKASNMMKHEKEIQSRPKRTWFESEKDKK 674
>gi|150864695|ref|XP_001383630.2| nucleolar DEAD-box protein required for synthesis of 60S ribosomal
subunits [Scheffersomyces stipitis CBS 6054]
gi|149385951|gb|ABN65601.2| nucleolar DEAD-box protein required for synthesis of 60S ribosomal
subunits, partial [Scheffersomyces stipitis CBS 6054]
Length = 672
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 214/449 (47%), Positives = 317/449 (70%), Gaps = 13/449 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LSRP+L+ LGY+KP+PIQ+A IP+AL GRDI A+TGSGKTAA+ +P +ERLLY
Sbjct: 164 LQLSRPVLKGLSQLGYTKPSPIQSASIPIALLGRDIVAGAVTGSGKTAAYMIPIIERLLY 223
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPD 121
+P ++ + RV++LTPTRELA+QV + +KI QF ++ L VGGL+ + QE L+S PD
Sbjct: 224 KPSKVASTRVIVLTPTRELAIQVGDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLKSRPD 283
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK-RRQTML 180
+V+ATPGR+IDH+RNS S +D L VL++DEADR+L+ GF E+ E++ L PK +RQT+L
Sbjct: 284 VVIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQVELTEILSLIPKNKRQTLL 343
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+ + +LI+LSL +P+R+ DP + LT+E VRIR+ R+ + A+L L K
Sbjct: 344 FSATMNTKIQDLIQLSLQRPVRIMIDPPKTAATKLTQEFVRIRK-RDHLKPALLFQLLKK 402
Query: 241 ---TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
S++++F K++AH+L+I+ GL +K +ELHG+LTQ QRL + F+K V L
Sbjct: 403 LDPAQQSRIVVFVSRKESAHKLRIVLGLLGMKVSELHGSLTQEQRLNNVNDFKKLIVPVL 462
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLL 355
I TD+AARGLDI ++ VINY P+ Y+HRVGRTARAGR+G +++FV + +DR+++
Sbjct: 463 ICTDLAARGLDIPKIEIVINYDMPKSHEVYLHRVGRTARAGRDGTSISFVGESTSDRNIV 522
Query: 356 K-AIAKRAGSKLKSRIVAEQ----SITKWSKIIEQMEDQVAAILQEEREERILRKAEMEA 410
K AI G ++K + V+ + + +KI+E ++ + +L EE++ + + +AEM+
Sbjct: 523 KDAIKSLEGGEVKGKAVSRNIDWVDVEQLNKIVESKQEIIEEVLDEEKQAKEILQAEMQL 582
Query: 411 TKAENMIAHKEEIFARPKRTWFVTEKEKK 439
KA NM+ H++EI +RPKRTWF +EK+KK
Sbjct: 583 AKASNMMKHEKEIQSRPKRTWFESEKDKK 611
>gi|365984639|ref|XP_003669152.1| hypothetical protein NDAI_0C02490 [Naumovozyma dairenensis CBS 421]
gi|343767920|emb|CCD23909.1| hypothetical protein NDAI_0C02490 [Naumovozyma dairenensis CBS 421]
Length = 771
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 214/454 (47%), Positives = 316/454 (69%), Gaps = 16/454 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRP+L+ LGY+KP+PIQ+A IP+AL G+DI A+TGSGKTAAF +P +ERLL+
Sbjct: 254 LSLSRPVLKGLANLGYNKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLF 313
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD-IRCCLVVGGLSTKMQETALRSMPD 121
+P ++ + RV++LTPTRELA+Q+ + +KI +F + + L VGGL+ + QE L+ PD
Sbjct: 314 KPAKVSSTRVIVLTPTRELAIQIADVAKKIGKFVNGLTFGLAVGGLNLRQQEQILKQRPD 373
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR IDH+RNS S ++D + +L++DEADR+LE GF E++E+++L P +RQTMLF
Sbjct: 374 IVIATPGRFIDHVRNSASFNVDSVEILVMDEADRMLEEGFQEELNEIMQLLPTKRQTMLF 433
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK- 240
SAT+ + +LI LSL KP+R+ +P + S LT+E VRI R R+ + A+L +L K
Sbjct: 434 SATMNSKIKQLINLSLKKPVRIMINPPKQAASKLTQEFVRI-RTRDHLKPALLFNLIKKL 492
Query: 241 -TFTSK-VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
++ K +++F K+ AH+L+I+ GL + AELHG+LTQ QRLE++ F+ + LI
Sbjct: 493 DEYSQKRMVVFVARKETAHKLRIILGLLGMNVAELHGSLTQEQRLESVTKFKSLEIPVLI 552
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLLK 356
TD+A+RGLDI ++ VINY P+ Y+HRVGRTARAGREG +V+ V + N+RS+++
Sbjct: 553 CTDLASRGLDIPKIEVVINYDMPKSYDIYLHRVGRTARAGREGRSVSLVGESSNERSIVR 612
Query: 357 -AI--------AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAE 407
AI K GS+ R V + + +K++E M V +L+EE++E+ + +AE
Sbjct: 613 DAIKSVEDVSKIKNDGSRALGRQVNWNQVEEINKLVENMAGTVEDVLEEEKQEKEILRAE 672
Query: 408 MEATKAENMIAHKEEIFARPKRTWFVTEKEKKLA 441
M+ K EN++ H+ EI ARP+RTWF +E EKK A
Sbjct: 673 MQIRKGENLLKHRAEIQARPRRTWFQSETEKKNA 706
>gi|380015035|ref|XP_003691517.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27-like [Apis florea]
Length = 710
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 232/439 (52%), Positives = 311/439 (70%), Gaps = 3/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+ + PTPIQAA IP+AL GRDICG A TG+GKTAA+ LPTLERLL
Sbjct: 160 QMNLSRPLLKAITAMNFVHPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLPTLERLL 219
Query: 62 YRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
YRP PAI RVL+L PTREL VQV+ + ++++QFT I L VGGL K QE LR P
Sbjct: 220 YRPLDGPAISRVLVLVPTRELGVQVYQVTKQLSQFTTIEVGLSVGGLDVKAQEAVLRRSP 279
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ATPGR+IDHL+N+ + LD + VLILDEADR+L+ F+ ++ +V+ C + RQT+L
Sbjct: 280 DIVIATPGRLIDHLKNTPTFSLDSIEVLILDEADRMLDEYFAEQMKYIVKQCSRSRQTIL 339
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE+V +L +SL KP+++ D + L +E +RIR+ RE ++EA+L +L +
Sbjct: 340 FSATMTEEVKDLAAVSLNKPVKVFIDSNQDVAFNLRQEFIRIRKEREGDREAILAALICR 399
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF V++F TK+ AHRL IL GL +K ELHGNLTQ QRLE L F+ + +D L+AT
Sbjct: 400 TFHDHVMVFVQTKKQAHRLHILLGLLGIKVGELHGNLTQPQRLENLTKFKNEEIDILLAT 459
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI GV+TVIN+ P + Y+HRVGRTARAGR G +V+ + +RSL+K I K
Sbjct: 460 DVAARGLDISGVKTVINFVMPATIQHYIHRVGRTARAGRVGVSVSLAGEQERSLVKEIIK 519
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
A + +K+RI+ I K+ K ++ +E V IL+EER ER L K E +A +AE ++ K
Sbjct: 520 NAKNPVKNRIIPSDIIDKYYKKLQSLEPDVEKILEEERNERELAKIENQANRAEKLL--K 577
Query: 421 EEIFARPKRTWFVTEKEKK 439
E +RTWF T+KE+K
Sbjct: 578 NESNKSIQRTWFQTQKERK 596
>gi|340717314|ref|XP_003397129.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Bombus
terrestris]
Length = 740
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 231/435 (53%), Positives = 309/435 (71%), Gaps = 3/435 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+ + PTPIQAA IP+AL GRDICG A TG+GKTAA+ LPTLERLL
Sbjct: 161 QMNLSRPLLKAITAMNFVHPTPIQAATIPVALLGRDICGCAATGTGKTAAYMLPTLERLL 220
Query: 62 YRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
YRP P+I RVL+L PTREL VQV+ + ++++QFT I L VGGL K+QE LR P
Sbjct: 221 YRPLDGPSISRVLVLVPTRELGVQVYQVTKQLSQFTTIEVGLSVGGLDVKVQEAVLRKNP 280
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ATPGR+IDHLRN+ S LD + VLILDEADR+L+ F+ ++ +V+ C + RQT+L
Sbjct: 281 DIVIATPGRLIDHLRNTPSFSLDSIEVLILDEADRMLDEYFAEQMKYIVKQCSRSRQTIL 340
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE+V +L +SL KP+++ D + L +E +RIR+ RE ++EA+L +L +
Sbjct: 341 FSATMTEEVKDLAAVSLDKPVKVFVDSNQDVAFNLRQEFIRIRKEREGDREAILAALICR 400
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF V++F TK+ AHRL IL GL +K ELHGNLTQ QRLE L F+ + +D L+AT
Sbjct: 401 TFHDHVMVFVQTKKQAHRLHILLGLLGIKVGELHGNLTQPQRLENLTKFKNEEIDILLAT 460
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI GV+TVIN+ P + Y+HRVGRTARAGR G +V+ + +RSL+K I K
Sbjct: 461 DVAARGLDISGVKTVINFVMPVTMQHYIHRVGRTARAGRVGVSVSLAGEQERSLVKEIIK 520
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
A + +K+RI+ I K+SK ++ +E V IL+EER ER L K E +A +AE ++ K
Sbjct: 521 NAKNPVKNRIILPDIIDKYSKKLQSLETDVNKILEEERNERELAKIENQANRAEKLL--K 578
Query: 421 EEIFARPKRTWFVTE 435
E +RTWF T+
Sbjct: 579 NESNKGAQRTWFQTQ 593
>gi|344299490|gb|EGW29843.1| hypothetical protein SPAPADRAFT_157925 [Spathaspora passalidarum
NRRL Y-27907]
Length = 553
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 220/449 (48%), Positives = 316/449 (70%), Gaps = 14/449 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LSRP+L+ LGY KP+PIQ+A IP+AL G+DI A TGSGKTAA+ +P +ERLLY
Sbjct: 45 LQLSRPVLKGLAQLGYVKPSPIQSASIPIALLGKDIVAGAQTGSGKTAAYMIPIIERLLY 104
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPD 121
+P ++P+ RV++LTPTRELA+QV + +K++QF ++ L VGGL+ + QE L+S PD
Sbjct: 105 KPSKVPSTRVIVLTPTRELAIQVCDVGKKLSQFINNLNFGLAVGGLNLRQQELQLKSRPD 164
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK-RRQTML 180
IV+ATPGR+IDH+RNS S +D+L VL++DEADR+L+ GF AE+ E++ L PK +RQT+L
Sbjct: 165 IVIATPGRLIDHIRNSPSFSIDNLEVLVIDEADRMLDEGFQAELTEILSLIPKYKRQTLL 224
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+ + +LI+LSL KP+R+ DP S L +E +RIR+ R+ + A+L L K
Sbjct: 225 FSATMNTKIQDLIQLSLQKPVRIMIDPPKTAASKLIQEFIRIRK-RDHLKPALLFQLL-K 282
Query: 241 TFTSK----VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 296
T K +++F K+ AH+L+I+ GL +K +ELHG+LTQ QRL+++ F+ V
Sbjct: 283 TIDPKQQNRIVVFVSRKEMAHKLRIIIGLLGMKVSELHGSLTQEQRLKSVSDFKNLVVPV 342
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN--DRSL 354
LI TD+A+RGLDI ++ VINY P+ Y+HRVGRTARAGR+G +++FV ++ DRS+
Sbjct: 343 LICTDLASRGLDIPKIEIVINYDMPKTHEVYLHRVGRTARAGRDGVSISFVGESTQDRSI 402
Query: 355 LKA----IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEA 410
+KA IA+ K SR V + +KIIE ++ + +L EE++ + + +AEME
Sbjct: 403 VKAAIKSIAEGNSGKAISRNVDWNKVESINKIIESKKEIIEEVLDEEKQAKEILQAEMEL 462
Query: 411 TKAENMIAHKEEIFARPKRTWFVTEKEKK 439
TKA N+I H +EI ARPKRTWF +E++KK
Sbjct: 463 TKASNIIKHGKEIQARPKRTWFESERDKK 491
>gi|156844737|ref|XP_001645430.1| hypothetical protein Kpol_534p53 [Vanderwaltozyma polyspora DSM
70294]
gi|160380651|sp|A7TJM9.1|DRS1_VANPO RecName: Full=ATP-dependent RNA helicase DRS1
gi|156116092|gb|EDO17572.1| hypothetical protein Kpol_534p53 [Vanderwaltozyma polyspora DSM
70294]
Length = 752
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/450 (48%), Positives = 314/450 (69%), Gaps = 12/450 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LSRP+L+ LGY+KP+PIQ+A IP+ L+G+DI A+TGSGKTAAF +P +ERLLY
Sbjct: 236 LTLSRPVLKGLSDLGYTKPSPIQSATIPIGLSGKDIIAGAVTGSGKTAAFMIPIIERLLY 295
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPD 121
+P ++ + RV++LTPTRELA+Q+ + +KI ++ + + L VGGL+ + QE L++ PD
Sbjct: 296 KPAKVASTRVIVLTPTRELAIQIADVGKKIGKYVSGLTFGLAVGGLNLRQQEQELKTRPD 355
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR IDH+RNS S ++D + VL++DEADR+LE GF E++E++ L P +RQT+LF
Sbjct: 356 IVIATPGRFIDHVRNSSSFNVDSVEVLVMDEADRMLEEGFQEELNEILTLLPSKRQTLLF 415
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK- 240
SAT+ + LI LSL KP+R+ +P + + LT+E VRIR+ R+ + A+L L K
Sbjct: 416 SATMNSRIKSLISLSLRKPVRIMINPPKQAAARLTQEFVRIRK-RDHLKPALLFYLIRKL 474
Query: 241 --TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
T ++++F K+ AH+L+I+ GL +K ELHG+LTQ QRL+++ F+ V LI
Sbjct: 475 DGTGQKRIVVFVARKEMAHKLRIILGLLGMKVGELHGSLTQEQRLQSVNNFKSLEVPVLI 534
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLLK 356
TD+A+RGLDI ++ VIN+ P+ Y+HRVGRTARAGREG +VTFV + DRS+++
Sbjct: 535 CTDLASRGLDIPKIEVVINFDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVR 594
Query: 357 AIAK---RAGSKLK--SRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEAT 411
+ K + SK K SR V I + +K++E + + IL EE++E+ + +AEM+
Sbjct: 595 SAIKSVEESSSKNKAVSRNVEWTQIEETNKLVESFGETIDDILVEEKQEKEILRAEMQLR 654
Query: 412 KAENMIAHKEEIFARPKRTWFVTEKEKKLA 441
K ENMI HK+EI +RPKRTWF +E EKK A
Sbjct: 655 KGENMIKHKKEIQSRPKRTWFQSEAEKKNA 684
>gi|142982571|sp|P0C2N7.1|DRS1_CHAGB RecName: Full=ATP-dependent RNA helicase DRS1
Length = 795
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 223/466 (47%), Positives = 306/466 (65%), Gaps = 21/466 (4%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRP+LR ++G++KPTPIQA IP+AL G+D+ G A+TGSGKTAAF +P LERLLY
Sbjct: 281 MSLSRPILRGLTSVGFTKPTPIQAKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLY 340
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK++P RV++LTPTRELA+Q HS+ K+A TDI+ CL VGGLS K+QE LR PD+
Sbjct: 341 RPKKVPTTRVVVLTPTRELAIQCHSVATKLASHTDIKFCLAVGGLSLKVQEGELRLRPDV 400
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V+ATPGR IDH+RNS S ++ + +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 401 VIATPGRFIDHMRNSASFAVETVEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFS 460
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD+LI++ L KP R+ D + TL +E VR+R RE + L
Sbjct: 461 ATMTSTVDKLIRVGLNKPARIMVDSQKQTAVTLAQEFVRLRPGREEKRMGYLGPYLQDPV 520
Query: 243 --TSKVIIFSGTKQAAHRLKI-LFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
TS ++ + + + L G +A H E FR V++L+A
Sbjct: 521 HRTSHYLLQAEEDCSPDPDHLRLAGAFEHRAPWKH---------EPGSAFRDGKVNYLLA 571
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA-- 357
TD+A+RGLDI G+ TVINY P+ L YVHRVGRTARAGR G A+T + DR ++KA
Sbjct: 572 TDLASRGLDIKGIDTVINYEAPQSLEIYVHRVGRTARAGRSGVAITLAAEPDRKVVKAAV 631
Query: 358 -IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENM 416
K G+K+ SR++ KW I++M+D++ ILQEE+EE+ L + EM+ K EN+
Sbjct: 632 RAGKAQGAKIISRVIDAADADKWQDQIDEMDDEIDEILQEEKEEKQLAQIEMQVKKGENL 691
Query: 417 IAHKEEIFARPKRTWFVTEKEKKLAVKADKASIE------KGKGSG 456
I H+EEI ARPKRTWF T+++KK A + +A + K KG+G
Sbjct: 692 IKHEEEIHARPKRTWFETQEDKKKAKELGRAELNGVRDAMKKKGAG 737
>gi|405953609|gb|EKC21239.1| Putative ATP-dependent RNA helicase DDX27 [Crassostrea gigas]
Length = 740
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 246/589 (41%), Positives = 365/589 (61%), Gaps = 36/589 (6%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++N+SRPL++ + ++KPTPIQ A IP+AL GRD+C A+TGSGKT AF LP LERL+
Sbjct: 172 DMNVSRPLMKGLGQMNFTKPTPIQTATIPIALLGRDLCACAVTGSGKTVAFMLPILERLM 231
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
YR + A RVL+L PTRELAVQVH++ ++AQ+T+I L GGL K QE ALR PD
Sbjct: 232 YRTQEEAATRVLVLVPTRELAVQVHTVARQLAQYTNIEIVLSAGGLDIKAQEAALRMKPD 291
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR+IDHL NS + L ++ +L+LDEADR+L+ F+ +++E++R C + RQTMLF
Sbjct: 292 IVIATPGRLIDHLHNSPNFSLRNIEILVLDEADRMLDEYFAEQMNEIIRQCAQTRQTMLF 351
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++E V +L +SL +P+++ + + L +E +RIR RE ++EA++ SL S+T
Sbjct: 352 SATMSEAVQDLASVSLKQPVKIFVNQNTDVALGLRQEFIRIRPNREGDREAIIASLVSRT 411
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F I+F TK+ AHR+ I+ GL + ELHGNL+QAQRLE L+ F++ VD L+ATD
Sbjct: 412 FRDHCIVFIQTKKQAHRMHIILGLLGVNVGELHGNLSQAQRLETLKRFKQADVDVLLATD 471
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARGLDI GV+TVIN+ P + YVHRVGRTARAG++G +VT V + +R LLK + K+
Sbjct: 472 LAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGKKGRSVTLVGEQERKLLKEVVKK 531
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 421
A + LK+RIV ++ I+K+ I ++E + I +E+EE LR E + KA+ ++ ++
Sbjct: 532 ARTPLKTRIVPQEVISKYRDKISKLEKDLEEIETQEKEESYLRATENQMNKAKKLLEREK 591
Query: 422 EIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKN 481
KR+WF T KE+ Q+ E L+++E K
Sbjct: 592 NGMDDQKRSWFQTHKER-----------------------MQEKEALRLEEFSK------ 622
Query: 482 LPRKERRKLEAAREMLEDEDQVD-KLQGSGKDKKEKAGISMVDLAYRRAKAVKAKQKALD 540
LP+ ++ + ++ L ED+V+ ++Q K + + A+++ K K +
Sbjct: 623 LPKNKKANNKEKKKALTSEDRVNHEIQ-----KSHEFAVRSSKKAFKQKKIRVFKDEDFT 677
Query: 541 AGKIVKSNGKKSKHS-SQESNSRAKEMRELFHSDMSEKKQKRTGGIGKK 588
K KK K + QE + K + F S S K++K G +GKK
Sbjct: 678 NNKQQNKKAKKRKSAFDQELTNTGKSAVKKFRSGPSFKEKKELGLLGKK 726
>gi|157125871|ref|XP_001654429.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|108873494|gb|EAT37719.1| AAEL010317-PA [Aedes aegypti]
Length = 804
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 214/439 (48%), Positives = 308/439 (70%), Gaps = 4/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPL++A LGY PTPIQAA IP+AL GRDICG A TG+GKTAA+ LPTLERLL
Sbjct: 185 QMNLSRPLMKAIGVLGYIYPTPIQAATIPIALLGRDICGCAATGTGKTAAYMLPTLERLL 244
Query: 62 YRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
Y+P A+ RVL+L PTREL QV+ + +++ QFT I + +GGL K QE LR+ P
Sbjct: 245 YKPSAAQAVTRVLVLVPTRELGAQVYQVSKQLTQFTSIEVGIAIGGLDVKAQEAVLRTNP 304
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D+V+ATPGR+IDH++N+ S LD + VLILDEADR+L+ F+ ++ E+++ C K RQTML
Sbjct: 305 DVVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRMLDEYFAEQMKEIIQSCSKTRQTML 364
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T+ V +L +SLTKP+++ + + L +E +RIR RE ++E +L +L +
Sbjct: 365 FSATMTDQVKDLAAVSLTKPVKVFVNNNQTVAFNLRQEFIRIREGREADREPLLAALICR 424
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF ++F TK+ AHRL+IL GL +K+ ELHG+LTQ+QRLE+L+ F+ + VD LIAT
Sbjct: 425 TFHDHCMVFVQTKKTAHRLRILLGLLGVKSGELHGDLTQSQRLESLKQFKDEQVDVLIAT 484
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI GV+TVIN+ P + Y+HRVGRTARAG+ G +V+ + +R ++K I K
Sbjct: 485 DVAARGLDISGVKTVINFVMPITMEHYIHRVGRTARAGKAGVSVSLAGELERKIVKDIIK 544
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
A S +K+RI+ + + K+ K + +E+++ +L EER E++L + E + + E +
Sbjct: 545 NAVSPVKNRIIPTEIVDKYRKKVLALEEEIEKVLCEERAEKMLLQTEQQLNRTERKL--- 601
Query: 421 EEIFARPKRTWFVTEKEKK 439
+ + + P R WF T E+K
Sbjct: 602 KGVVSGPSREWFQTHHERK 620
>gi|225677534|gb|EEH15818.1| ATP-dependent RNA helicase drs1 [Paracoccidioides brasiliensis
Pb03]
Length = 815
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 219/441 (49%), Positives = 303/441 (68%), Gaps = 12/441 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+LSRP+LR ++G++ PTPIQ IP+AL G+D+ G A+TGSGKT AF +P LERLLY
Sbjct: 305 FSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILERLLY 364
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RP+++P RV IL PTRELAVQ ++ K+A +TDI C +VGG S + QE L+ PD+
Sbjct: 365 RPRKVPTSRVAILMPTRELAVQCCNVATKLATYTDITFCQLVGGFSLREQENILKKRPDV 424
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 425 IIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFS 484
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T +D+LI++ L +P+RL D + TL +E VR+R RE + L++LC +
Sbjct: 485 ATMTNTIDKLIRVGLNRPVRLMVDAQKQTVGTLVQEFVRLRPGREDKRLGYLITLCKTVY 544
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
VIIF K+ AHR++I+FGL LKAAELHG+++Q Q A+ + TD+
Sbjct: 545 KDLVIIFFRAKKEAHRVRIIFGLFGLKAAELHGSMSQEQASFAI-------ASGTLTTDL 597
Query: 303 AAR--GLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
GLDI GV+TVINY P+ Y+HRVGRTARAGR G A T ++DR ++KA K
Sbjct: 598 GHELIGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAESDRKVVKAAVK 657
Query: 361 RA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 417
G+K+ SR++ KW+ +E+MED+V IL+EE+EE+ L +AEME T+ N+I
Sbjct: 658 TGRAQGAKIVSRLIDVAEADKWAAKVEEMEDEVKEILKEEKEEKQLAQAEMEVTRGSNLI 717
Query: 418 AHKEEIFARPKRTWFVTEKEK 438
+H++EI +RPKRTWF +EKEK
Sbjct: 718 SHEKEIMSRPKRTWFESEKEK 738
>gi|116208202|ref|XP_001229910.1| hypothetical protein CHGG_03394 [Chaetomium globosum CBS 148.51]
gi|88183991|gb|EAQ91459.1| hypothetical protein CHGG_03394 [Chaetomium globosum CBS 148.51]
Length = 1453
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 223/466 (47%), Positives = 306/466 (65%), Gaps = 21/466 (4%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRP+LR ++G++KPTPIQA IP+AL G+D+ G A+TGSGKTAAF +P LERLLY
Sbjct: 281 MSLSRPILRGLTSVGFTKPTPIQAKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLY 340
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK++P RV++LTPTRELA+Q HS+ K+A TDI+ CL VGGLS K+QE LR PD+
Sbjct: 341 RPKKVPTTRVVVLTPTRELAIQCHSVATKLASHTDIKFCLAVGGLSLKVQEGELRLRPDV 400
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V+ATPGR IDH+RNS S ++ + +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 401 VIATPGRFIDHMRNSASFAVETVEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFS 460
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD+LI++ L KP R+ D + TL +E VR+R RE + L
Sbjct: 461 ATMTSTVDKLIRVGLNKPARIMVDSQKQTAVTLAQEFVRLRPGREEKRMGYLGPYLQDPV 520
Query: 243 --TSKVIIFSGTKQAAHRLKI-LFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
TS ++ + + + L G +A H E FR V++L+A
Sbjct: 521 HRTSHYLLQAEEDCSPDPDHLRLAGAFEHRAPWKH---------EPGSAFRDGKVNYLLA 571
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA-- 357
TD+A+RGLDI G+ TVINY P+ L YVHRVGRTARAGR G A+T + DR ++KA
Sbjct: 572 TDLASRGLDIKGIDTVINYEAPQSLEIYVHRVGRTARAGRSGVAITLAAEPDRKVVKAAV 631
Query: 358 -IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENM 416
K G+K+ SR++ KW I++M+D++ ILQEE+EE+ L + EM+ K EN+
Sbjct: 632 RAGKAQGAKIISRVIDAADADKWQDQIDEMDDEIDEILQEEKEEKQLAQIEMQVKKGENL 691
Query: 417 IAHKEEIFARPKRTWFVTEKEKKLAVKADKASIE------KGKGSG 456
I H+EEI ARPKRTWF T+++KK A + +A + K KG+G
Sbjct: 692 IKHEEEIHARPKRTWFETQEDKKKAKELGRAELNGVRDAMKKKGAG 737
>gi|308497817|ref|XP_003111095.1| hypothetical protein CRE_03900 [Caenorhabditis remanei]
gi|308240643|gb|EFO84595.1| hypothetical protein CRE_03900 [Caenorhabditis remanei]
Length = 749
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 203/437 (46%), Positives = 296/437 (67%), Gaps = 3/437 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSR +L+AC GY+ PTPIQ ACIP+AL+G+DIC A TG+GKTAAF LP LER++
Sbjct: 159 QMNLSRQILKACAGAGYTDPTPIQQACIPVALSGKDICACAATGTGKTAAFVLPILERMI 218
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
YRPK RVL+L PTRELA+QV + K++ F + CL GGL K QE ALRS PD
Sbjct: 219 YRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALRSGPD 278
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+VVATPGR+IDHL NS + +L + VL+LDEADR+LE F +++EL+RLC + RQT+LF
Sbjct: 279 VVVATPGRLIDHLHNSPNFNLGSIEVLVLDEADRMLEEAFRDQMNELIRLCAENRQTLLF 338
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+TE++DEL +SL +P+++ + + L +E +RIR RE ++E+++ +L ++T
Sbjct: 339 SATMTEEIDELASMSLQRPVKIFINENTDTALKLRQEFIRIRAGRETDRESMVAALVTRT 398
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F + I+F TK+ R++IL GL +K ++ +LTQ QR+E+L F+K +D L++TD
Sbjct: 399 FQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESLSKFKKGEIDVLVSTD 458
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK- 360
+A+RGLDI GVQTVIN P+ + Y+HRVGRTARAG+ G +++ V + +R LLK I
Sbjct: 459 LASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEEERKLLKEIVNS 518
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
A LK R+VA + + + I+ +E+ + I +E+R E+ LR AE K ++ +
Sbjct: 519 NADRTLKQRLVAPEVVEAYRSRIDDLEETIQQIDEEDRAEKELRIAESSMAKTQHALETG 578
Query: 421 EEIFARPKRTWFVTEKE 437
E +R W + E +
Sbjct: 579 EA--GNERRVWLMKESQ 593
>gi|158287566|ref|XP_309566.4| AGAP011084-PA [Anopheles gambiae str. PEST]
gi|157019713|gb|EAA05253.5| AGAP011084-PA [Anopheles gambiae str. PEST]
Length = 809
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/445 (48%), Positives = 309/445 (69%), Gaps = 9/445 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+++LSRPL++A ALGY PTPIQA+ IP+AL GRDICG A TG+GKTAA+ LPT+ERLL
Sbjct: 178 QMDLSRPLMKAIGALGYIYPTPIQASTIPIALMGRDICGCAATGTGKTAAYMLPTIERLL 237
Query: 62 YRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
Y+P A+ RVL+L PTREL QV+ + +++ QFT++ + +GGL K QE LR P
Sbjct: 238 YKPNVAQAVTRVLVLVPTRELGAQVYQVAKQLTQFTNVDVGIAIGGLDVKAQEAVLRKNP 297
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D+V+ATPGR+IDH++N+ S LD + +LILDEADR+L+ F+ ++ E++R C RQTML
Sbjct: 298 DVVIATPGRLIDHIKNTPSFSLDSIEILILDEADRMLDEYFAEQMKEIIRSCSATRQTML 357
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE+V +L +SL KP+++ + + L +E +RIR RE ++EA+L +L +
Sbjct: 358 FSATMTEEVKDLAAVSLKKPVKIFVNNNQTVAFNLRQEFIRIREGREADREAILAALVCR 417
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF ++F TK+ AHRL+IL GL +K ELHG+LTQAQRLE+L+ F+ + VD LIAT
Sbjct: 418 TFHDHCMVFVQTKRTAHRLRILLGLLGVKTGELHGDLTQAQRLESLKEFKDEQVDILIAT 477
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V+TVIN+ P L Y+HRVGRTARAG+ G +V+ + +R ++K I K
Sbjct: 478 DVAARGLDISTVKTVINFVMPATLEHYIHRVGRTARAGKAGVSVSLAGEQERKIVKEIVK 537
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI--- 417
A S +K+RI+ I K+ + +E ++ +L EER E++LR+ E + T AE +
Sbjct: 538 NAVSSVKNRIIPLDIIEKYRNKVAALEPEIDRVLAEERAEKLLRQTEQQLTSAERKLLGN 597
Query: 418 ---AHKEEIFARPKRTWFVTEKEKK 439
A K+++ P R WF T+ E++
Sbjct: 598 AGKAAKQDV--PPPREWFQTQHERR 620
>gi|367014751|ref|XP_003681875.1| hypothetical protein TDEL_0E04210 [Torulaspora delbrueckii]
gi|359749536|emb|CCE92664.1| hypothetical protein TDEL_0E04210 [Torulaspora delbrueckii]
Length = 740
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/450 (46%), Positives = 312/450 (69%), Gaps = 12/450 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRP+L+ LGY++P+PIQ+A IP+AL G+DI A+TGSGKTAAF +P +ERLLY
Sbjct: 224 LSLSRPVLKGLGDLGYTRPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 283
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPD 121
+P +I + RV++LTPTRELA+QV + +K+ ++ + + L VGGL+ + QE +L++ PD
Sbjct: 284 KPAKIASTRVIVLTPTRELAIQVSDVAKKLGKYVSGLTFGLAVGGLNLRQQEQSLKARPD 343
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IVVATPGR IDH+RNS S ++D + VL++DEADR+LE GF E++E++ L P +RQT+LF
Sbjct: 344 IVVATPGRFIDHIRNSASFNVDSVEVLVIDEADRMLEEGFQEELNEILSLLPSKRQTLLF 403
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK- 240
SAT+ + +L+ L+L +P+R+ DP + S LT+E VRIR+ R+ + +VL L K
Sbjct: 404 SATMNSKIKQLVSLTLKRPVRVMIDPPKQAASKLTQEFVRIRK-RDHLKPSVLFHLIKKL 462
Query: 241 --TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
T ++++F K+ AHRL+I+ GL + ELHG+L+Q QRL+++ F+ V L+
Sbjct: 463 DGTGQKRMVVFVARKEMAHRLRIILGLLGISVGELHGSLSQEQRLQSVNQFKSLEVPILV 522
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLLK 356
TD+A+RGLDI ++ VINY P++ Y+HRVGRTARAGREG +V+ V + DRS+++
Sbjct: 523 CTDLASRGLDIPKIEVVINYDMPKNYEVYLHRVGRTARAGREGRSVSLVGESSQDRSVVR 582
Query: 357 AIAKRA-----GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEAT 411
+ K G R + ++ + +K++ ME + IL+EE+ E+ + +AEME
Sbjct: 583 SAIKSVEESSEGQTAAVRNIDWNNVEEINKLVVSMEGTIDEILEEEKGEKEILRAEMELR 642
Query: 412 KAENMIAHKEEIFARPKRTWFVTEKEKKLA 441
K EN++ HK EI ARPKRTWF +E EKK A
Sbjct: 643 KGENLLKHKAEIEARPKRTWFNSEAEKKNA 672
>gi|118351203|ref|XP_001008880.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
gi|89290647|gb|EAR88635.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
SB210]
Length = 643
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/438 (47%), Positives = 304/438 (69%), Gaps = 4/438 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L +PLL+A E + Y PT IQ+ IP AL G+D+ S++TGSGKTAAF +P L++
Sbjct: 194 DLGLIKPLLKAVEEMQYEFPTNIQSLAIPAALQGKDLLASSLTGSGKTAAFLIPILQKF- 252
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
YR + LI+TPTRELA Q++ + K+ ++T +R CLV+G + + QE LR P+
Sbjct: 253 YRSPFTNYSKALIVTPTRELAFQIYEVFTKLNKYTKLRACLVIGQSAMQKQEAELRGNPE 312
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR+IDHL+NS S+DLD+L VLI DEAD+LL+LGF A +V C + RQT+LF
Sbjct: 313 VIIATPGRLIDHLQNSRSIDLDNLEVLIFDEADKLLDLGFEAAAQNIVENCNRERQTLLF 372
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SATLT +V++LI ++L KP+R+ A+P + L ++++RI+ E +EA LL++ +K
Sbjct: 373 SATLTSEVNKLIDIALRKPIRIQANPDGQTNDKLIQKMLRIQ--HEDFREAALLAIAAKY 430
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ + IIF TK+ HR+ I+FGL LK ELHG+LTQ QR++A F++ +L+ATD
Sbjct: 431 YKERTIIFFKTKRQTHRMAIIFGLFGLKVCELHGDLTQNQRIQAFSDFKEGKYQYLMATD 490
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+A+RGLDI GV+ VIN+ P ++T Y+HRVGRTARAG EG ++T D + LK + K
Sbjct: 491 LASRGLDIQGVKAVINFELPSEVTRYIHRVGRTARAGNEGISLTIGLDAELKTLKKMLKE 550
Query: 362 AGSKLKSRI-VAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
K+ ++ ++ +++ K+ + I+ +E +V +L+EE+ ER LRKAEME KAENMI HK
Sbjct: 551 NKDKMMEKVSLSVETLQKYKEKIQNVEREVVKVLEEEQAERQLRKAEMELQKAENMIKHK 610
Query: 421 EEIFARPKRTWFVTEKEK 438
+EI +PK+TWF T E+
Sbjct: 611 DEIMNKPKKTWFQTNHER 628
>gi|254578822|ref|XP_002495397.1| ZYRO0B10318p [Zygosaccharomyces rouxii]
gi|238938287|emb|CAR26464.1| ZYRO0B10318p [Zygosaccharomyces rouxii]
Length = 750
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/448 (47%), Positives = 306/448 (68%), Gaps = 12/448 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRP+L+A LGY+ P+PIQ A IP+AL G+DI A+TGSGKTAAF +P +ERL+Y
Sbjct: 242 LSLSRPVLKALGDLGYATPSPIQGATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLIY 301
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD-IRCCLVVGGLSTKMQETALRSMPD 121
+P ++ + RV++L PTRELA+QV + +K+ ++ + + + VGGL+ + QE L++ PD
Sbjct: 302 KPAKVASTRVIVLAPTRELAIQVADVGKKLGKYVNGLTFGIAVGGLNLRQQEQILKTRPD 361
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR IDH+RNS S ++D + VL++DEADR+LE GF EI+E++ L P +RQTMLF
Sbjct: 362 IVIATPGRFIDHIRNSSSFNVDSVEVLVIDEADRMLEEGFQDEINEIMHLLPSKRQTMLF 421
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK- 240
SAT+ + +L+ LSL +P+R+ DP + S L +E VRIR+ R+ + + L L K
Sbjct: 422 SATMNSKIKQLVSLSLKRPVRVMTDPPQQAVSKLQQEFVRIRK-RDHLKPSTLFYLIKKL 480
Query: 241 --TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
++++F K+ HRL+I+ GL + AELHG+L Q QRL+++ F+ V LI
Sbjct: 481 DGAAQKRMVVFVSKKEMVHRLRIILGLLGMAVAELHGSLNQEQRLQSINKFKSLEVPVLI 540
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLLK 356
TD+A+RGLDI ++ VINY P+ Y+HRVGRTARAGREG +V+FV T +RS++K
Sbjct: 541 CTDLASRGLDIPKIEVVINYDMPKSFEIYLHRVGRTARAGREGRSVSFVGETSQERSIVK 600
Query: 357 AIAKRA---GSK--LKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEAT 411
+ K A G K R V I + +K +E M D V IL EE++E+ + +AEM+
Sbjct: 601 SAIKSAQESGEKNLPVGRNVDWNQIEEINKTVESMSDTVKDILDEEKQEKEILQAEMQLK 660
Query: 412 KAENMIAHKEEIFARPKRTWFVTEKEKK 439
K EN+I HK+EI +RPKRTWF TE EKK
Sbjct: 661 KGENLIKHKQEIESRPKRTWFQTETEKK 688
>gi|320581153|gb|EFW95374.1| ATP-dependent RNA helicase [Ogataea parapolymorpha DL-1]
Length = 747
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/446 (48%), Positives = 309/446 (69%), Gaps = 10/446 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LSRP+L+A ALGYSKP+ IQ+A IP+AL G+DI A+TGSGKTAA+ +P +ERLLY
Sbjct: 245 LKLSRPILKALSALGYSKPSAIQSASIPIALLGKDIVAGAVTGSGKTAAYMIPIIERLLY 304
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD-IRCCLVVGGLSTKMQETALRSMPD 121
+P ++P+ RV++L PTRELA+QV + +KI QF + + L VGGL+ + QE L+ PD
Sbjct: 305 KPSKMPSTRVIVLAPTRELAIQVADVGKKIGQFVNGLTFGLAVGGLNLRQQEQELKKRPD 364
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR+IDH+RNS+S +++ + VL+ DEADR+LE GF E+ E++ L P RQTMLF
Sbjct: 365 IVIATPGRLIDHIRNSVSFNVESVEVLVFDEADRMLEEGFQKELTEILSLLPLNRQTMLF 424
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ + LI+LSL KP+R+ S L +E VRIR+ RE ++ A+L ++ S+
Sbjct: 425 SATMNSRIKSLIQLSLKKPVRVMIGAPKAAASELVQEFVRIRK-RESSKPALLFNILSEM 483
Query: 242 --FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
S+VI+F K+ AHRL+I GL LK +ELHG+LTQ QRL+A+ F+ V LI
Sbjct: 484 DGLHSRVIVFVSRKEMAHRLRISLGLLGLKVSELHGSLTQEQRLKAIVDFKNLTVPILIC 543
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLLKA 357
TD+AARGLDI ++ VIN+ P+ Y+HRVGRTARAGR+G +++FV + DR+++K
Sbjct: 544 TDLAARGLDIPKIELVINFDMPKTYEIYLHRVGRTARAGRKGLSISFVGESSQDRNIVKE 603
Query: 358 IAKRA----GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKA 413
K+ K R V +++ K +I+++ E + +L EE++E+ L KAE E K
Sbjct: 604 AIKQVETENAGKAIGRNVNWENVEKIHRILQEKESVIFDVLNEEKQEKELLKAEQEIKKG 663
Query: 414 ENMIAHKEEIFARPKRTWFVTEKEKK 439
ENM+ ++EI +RPKRTWF+T ++KK
Sbjct: 664 ENMLNFEQEIKSRPKRTWFMTSQQKK 689
>gi|223590197|sp|A5DKW3.2|DRS1_PICGU RecName: Full=ATP-dependent RNA helicase DRS1
gi|190347530|gb|EDK39816.2| hypothetical protein PGUG_03914 [Meyerozyma guilliermondii ATCC
6260]
Length = 705
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/450 (48%), Positives = 316/450 (70%), Gaps = 12/450 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LSRPLL+ LGY+ P+ IQAA IP+A+ G+DI A+TGSGKTAA+ +P +ERL+Y
Sbjct: 203 LQLSRPLLKGVGNLGYTVPSAIQAASIPIAMMGKDIVAGAVTGSGKTAAYLIPIIERLIY 262
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPD 121
+P + A RV++LTPTRELA+QV + +K+ QF ++ L VGGL+ + QE L+S PD
Sbjct: 263 KPAAVSATRVIVLTPTRELAIQVCDVGKKLGQFVANLNFGLAVGGLNLRQQEQQLKSRPD 322
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK-RRQTML 180
IVVATPGR+IDH+RNS S +++L VL++DEADR+LE GF E+ E++ L PK +RQTML
Sbjct: 323 IVVATPGRLIDHIRNSPSFSIENLEVLVMDEADRMLEEGFQVELTEILELIPKHKRQTML 382
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL---LSL 237
FSAT+ + +LI+LSL KP+R+ +P + S L +E VRIR+ RE + A+L L L
Sbjct: 383 FSATMNTKIQDLIQLSLDKPVRIMVNPPKQAASKLVQEFVRIRK-REHLKPALLYHLLRL 441
Query: 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
+++++F K+ AHRL+I+ GL +K +ELHG+LTQ QRL++++ FR V L
Sbjct: 442 VDPQQQNRIVVFVSRKEMAHRLRIVLGLLGMKVSELHGSLTQEQRLQSVKDFRSLAVPVL 501
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSL- 354
I TD+AARGLDI ++ VIN+ P+ Y+HRVGRTARAGREG ++TFV ++ DRS+
Sbjct: 502 ICTDLAARGLDIPKIEIVINFDMPKTHEIYLHRVGRTARAGREGRSITFVGESNQDRSIV 561
Query: 355 ---LKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEAT 411
+K++ ++ K SR V + + + + I+E +D + +L+EE+ + + +AEM+
Sbjct: 562 KDAIKSLEEQKNGKAVSRTVDWKKVEELNSIVESKKDTIDEVLEEEKSAKEILQAEMQLE 621
Query: 412 KAENMIAHKEEIFARPKRTWFVTEKEKKLA 441
KA N++ H++EI +RPKRTWF +E+EKK A
Sbjct: 622 KASNIMKHEKEIHSRPKRTWFQSEQEKKQA 651
>gi|268563805|ref|XP_002638939.1| Hypothetical protein CBG22166 [Caenorhabditis briggsae]
Length = 753
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/460 (45%), Positives = 300/460 (65%), Gaps = 24/460 (5%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSR +L+AC GYS PTPIQ ACIP+ALTG+DIC A TG+GKTAAF LP LER++
Sbjct: 147 QMNLSRQILKACAGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILERMI 206
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
YRPK RVL+L PTRELA+QV + K++ F + CL GGL K QE ALRS PD
Sbjct: 207 YRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALRSGPD 266
Query: 122 IVVATPGRMIDHLRNSMSVDL----------------------DDLAVLILDEADRLLEL 159
+VVATPGR+IDHL NS S +L +L VL+LDEADR+LE
Sbjct: 267 VVVATPGRLIDHLHNSPSFNLASIEVFLSLEKEKFRNSEIQESKNLKVLVLDEADRMLEE 326
Query: 160 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV 219
F +++EL+RLC + RQT+LFSAT+TE++DEL +SL KP+++ + + L +E
Sbjct: 327 AFRDQMNELIRLCAENRQTLLFSATMTEEIDELASMSLKKPVKIFINENTDTALKLRQEF 386
Query: 220 VRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 279
+RIR RE ++E+++ +L ++TF + I+F TK+ R++IL GL +K ++ +LTQ
Sbjct: 387 IRIRAGRETDRESMVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQ 446
Query: 280 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 339
QR+E+L F+K +D L++TD+A+RGLDI GVQTVIN P+ + Y+HRVGRTARAG+
Sbjct: 447 GQRIESLSKFKKGEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGK 506
Query: 340 EGYAVTFVTDNDRSLLKAIAK-RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEER 398
G +++ V + +R LLK I A LK R+VA + + + + I+++E+ + I +E+R
Sbjct: 507 AGRSISLVGEEERKLLKEIVNSNADRTLKQRLVAPEVVEAYRRRIDELEETIQQIDEEDR 566
Query: 399 EERILRKAEMEATKAENMIAHKEEIFA-RPKRTWFVTEKE 437
E+ LR AE K + + E A + KR W + E +
Sbjct: 567 AEKELRIAEASMAKTQQALEAVENGGAVQEKRVWMMKESQ 606
>gi|328856691|gb|EGG05811.1| hypothetical protein MELLADRAFT_43753 [Melampsora larici-populina
98AG31]
Length = 573
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 224/506 (44%), Positives = 328/506 (64%), Gaps = 33/506 (6%)
Query: 16 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPA-IRVLI 74
+ + PTPIQ IPLAL G+D+ S++TGSGKT + +P ERL++R K+ RV+I
Sbjct: 1 MSVTTPTPIQRQTIPLALLGKDLVCSSMTGSGKTLGYLVPIFERLMWRDKKGGGKTRVMI 60
Query: 75 LTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHL 134
LTPTRELAVQV+ + + +A++TD+ L VGG++ + QE LR P+IVV TPGR+IDH+
Sbjct: 61 LTPTRELAVQVYQVGKSLARYTDLTFSLCVGGMNLRTQEAELRERPEIVVGTPGRVIDHV 120
Query: 135 RNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIK 194
RN+ LD L +L++DEADR+LE GF E+ E++ CP+ RQTMLFSAT++E V +L +
Sbjct: 121 RNTRGFSLDTLEILVIDEADRILEEGFRDELEEIISNCPRSRQTMLFSATVSESVADLAR 180
Query: 195 LSLTKPLRLSADPSAKRPSTLTEEVVRIRR---------MREVNQEAVLLSLCSKTFTSK 245
LSL KP+R+ DP + LT+E +R+R + ++ +EA+L++LC + SK
Sbjct: 181 LSLEKPIRIKIDPPKSTATGLTQEFLRVRDDQLLKKGAGVADIQREAILVTLCKASSFSK 240
Query: 246 --VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA 303
IIF +K AHR+K+ F L LKAAELHGNLTQ QR+ +L+ F+ V +L+ATD+A
Sbjct: 241 GRTIIFFRSKVGAHRMKVTFSLFGLKAAELHGNLTQEQRMSSLQDFKDGKVSYLLATDLA 300
Query: 304 ARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAG 363
+RGLDI GV+ VINY P Y+HR+GRTARAG++G A+T V ++DR L+K +
Sbjct: 301 SRGLDIKGVERVINYETPNQYDVYLHRIGRTARAGKKGSALTLVGESDRKLVKEARRNCQ 360
Query: 364 SKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEI 423
+K R + + + SK + +++ +A IL++E+EE++L+K EME K +N+I H +EI
Sbjct: 361 GTIKQRKIDPKIVQDVSKELARLQSSIATILEDEQEEKVLKKTEMELKKGQNLIEHDDEI 420
Query: 424 FARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKR--KREREKN 481
+RP RTWF +E +KK K K G TSA A K K+ + KR++
Sbjct: 421 KSRPARTWFQSESDKK-----------KSKDVG---TSAHTANFTKTKDSKGTKRDKFDG 466
Query: 482 LPRKERRKLEAAREMLEDEDQVDKLQ 507
L R ++R R+M +ED ++LQ
Sbjct: 467 LSRAQKR-----RKMANEEDAQERLQ 487
>gi|195149497|ref|XP_002015694.1| GL11206 [Drosophila persimilis]
gi|194109541|gb|EDW31584.1| GL11206 [Drosophila persimilis]
Length = 785
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 220/439 (50%), Positives = 304/439 (69%), Gaps = 5/439 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPL+RA LGY PTPIQA+ IP+AL GRDICG A TG+GKTAA+ LPTLERLL
Sbjct: 161 QMNLSRPLMRAIGVLGYIYPTPIQASTIPIALLGRDICGCAATGTGKTAAYMLPTLERLL 220
Query: 62 YRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
YRP AI RVL+L PTREL QV+ + +++ QFT I L +GGL K QE LR P
Sbjct: 221 YRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQNP 280
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ATPGR+IDH++N+ S LD + VLILDEADR+L+ F+ ++ E++ C K RQTML
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT++E V +L +SL KP+++ + + + L +E +RIR +E ++E +L SL +
Sbjct: 341 FSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICR 400
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF ++F TK+ AHRL IL GL ++A ELHGNLTQ QRLE+L+ F+++ +D LIAT
Sbjct: 401 TFHDHCMVFVQTKKQAHRLHILLGLLGIRAGELHGNLTQQQRLESLKKFKEEQIDVLIAT 460
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI+GV+TVIN+ P Y+HRVGRTARAGR G +V+ + +R ++K I K
Sbjct: 461 DVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIK 520
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
A S +K+RI+ + I K+ K + +E ++ IL EE+ ER L K E + +K E + +
Sbjct: 521 NAESTIKNRIIPPEIIEKYRKKLTALEPEIQNILDEEQAERQLAKTEQQLSKTERKLLGQ 580
Query: 421 EEIFARPKRTWFVTEKEKK 439
KR WF T+++++
Sbjct: 581 ----TNDKRGWFQTKQQRE 595
>gi|198456267|ref|XP_001360280.2| GA15282 [Drosophila pseudoobscura pseudoobscura]
gi|198135552|gb|EAL24855.2| GA15282 [Drosophila pseudoobscura pseudoobscura]
Length = 785
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 220/439 (50%), Positives = 304/439 (69%), Gaps = 5/439 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPL+RA LGY PTPIQA+ IP+AL GRDICG A TG+GKTAA+ LPTLERLL
Sbjct: 161 QMNLSRPLMRAIGVLGYIYPTPIQASTIPIALLGRDICGCAATGTGKTAAYMLPTLERLL 220
Query: 62 YRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
YRP AI RVL+L PTREL QV+ + +++ QFT I L +GGL K QE LR P
Sbjct: 221 YRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQNP 280
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ATPGR+IDH++N+ S LD + VLILDEADR+L+ F+ ++ E++ C K RQTML
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT++E V +L +SL KP+++ + + + L +E +RIR +E ++E +L SL +
Sbjct: 341 FSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICR 400
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF ++F TK+ AHRL IL GL ++A ELHGNLTQ QRLE+L+ F+++ +D LIAT
Sbjct: 401 TFHDHCMVFVQTKKQAHRLHILLGLLGIRAGELHGNLTQQQRLESLKKFKEEQIDVLIAT 460
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI+GV+TVIN+ P Y+HRVGRTARAGR G +V+ + +R ++K I K
Sbjct: 461 DVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIK 520
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
A S +K+RI+ + I K+ K + +E ++ IL EE+ ER L K E + +K E + +
Sbjct: 521 NAESTIKNRIIPPEIIEKYRKKLTALEPEIQNILDEEQAERQLAKTEQQLSKTERKLLGQ 580
Query: 421 EEIFARPKRTWFVTEKEKK 439
KR WF T+++++
Sbjct: 581 ----TNDKRGWFQTKQQRE 595
>gi|427792819|gb|JAA61861.1| Putative atp-dependent rna helicase, partial [Rhipicephalus
pulchellus]
Length = 696
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 218/437 (49%), Positives = 302/437 (69%), Gaps = 1/437 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+ + PTPIQ++ IP+AL GRDI A TG+GKTAAF LP LERLL
Sbjct: 129 QMNLSRPLLKALTAMNFVYPTPIQSSTIPMALLGRDIYACAATGTGKTAAFMLPVLERLL 188
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+RPK+ RVL++ PTRELAVQV+ + ++AQFT+I L GGL K QE ALR +PD
Sbjct: 189 FRPKQDVVTRVLVIVPTRELAVQVYQVSLQLAQFTNIMITLSAGGLDLKAQEAALRKLPD 248
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N+ DL ++ VLILDEAD++L+ F++++ E++R C RQTMLF
Sbjct: 249 IIIATPGRLIDHLENTPGFDLRNIEVLILDEADKMLDETFASQMKEIIRQCAPTRQTMLF 308
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+TE+V +L +SL KP++L + + L +E VRIR RE ++EA+L +L +T
Sbjct: 309 SATMTEEVKDLAAVSLQKPVKLFLNNNTDVALNLRQEFVRIRPQREGDREAILAALVCRT 368
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F I+F TK+ AHRL++L GL + ELHGNL QAQRLEAL F++ VD L+ TD
Sbjct: 369 FHDHTIVFVQTKKLAHRLRVLLGLLGARVDELHGNLNQAQRLEALHRFKEMEVDVLVTTD 428
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+ ARGLDI V+TVIN+ P + YVHRVGRTARAG+ G +V+ V + +R LLK I K+
Sbjct: 429 LVARGLDIKDVKTVINFTLPHTVQHYVHRVGRTARAGKSGRSVSMVGEQERKLLKEIVKQ 488
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 421
A + +K RI+ + + + I +E ++ +ILQEE+ E+ L E E KA ++ +K+
Sbjct: 489 ARTPVKQRILPPDVVAHFREKIAGLEQEIESILQEEKAEKELGVMEKEVEKASELV-NKK 547
Query: 422 EIFARPKRTWFVTEKEK 438
P+R+WF T KEK
Sbjct: 548 AAANEPQRSWFQTPKEK 564
>gi|383864023|ref|XP_003707479.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Megachile
rotundata]
Length = 741
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 225/435 (51%), Positives = 308/435 (70%), Gaps = 4/435 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A + + PTPIQAA IP+AL GRDICG A TG+GKTAA+ LPTLERLL
Sbjct: 161 QMNLSRPLLKAITTMNFVHPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLPTLERLL 220
Query: 62 YRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
YRP PAI RVL+L PTREL VQV+ + ++++QFT + L VGGL K+QET LR P
Sbjct: 221 YRPLDGPAISRVLVLVPTRELGVQVYQVTKQLSQFTTVEVGLSVGGLDVKVQETVLRKNP 280
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ATPGR+IDHL+N+ + LD + VLILDEADR+L+ F+ ++ +V+ C + RQTML
Sbjct: 281 DIVIATPGRLIDHLKNTPTFSLDSIEVLILDEADRMLDEYFAEQMKYIVQQCSRTRQTML 340
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+TE+V +L +SL KP+++ D + L +E +RIR+ RE ++EA+L +L +
Sbjct: 341 FSATMTEEVKDLAAVSLDKPVKVFVDSNQDVAFNLRQEFIRIRKEREGDREAILAALVCR 400
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF ++F TK+ AHRL IL GL +K ELHGNLTQ QRLE L F+ + +D L+AT
Sbjct: 401 TFHDHTMVFVQTKKQAHRLHILLGLLGIKVGELHGNLTQPQRLENLRKFKNEEIDILLAT 460
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI GV+TVIN+ P + Y+HRVGRTARAGR G +V+ + +RSL+K I K
Sbjct: 461 DVAARGLDISGVKTVINFVMPATMQHYIHRVGRTARAGRVGVSVSLAGEQERSLVKDIIK 520
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
A + +K+RI+ I K++K ++ +E V IL+EER ER L K E +A +AE ++ +
Sbjct: 521 NAKNPVKNRIIPPDIIEKYNKKLKSLEPDVEKILEEERNERELAKIENQANRAEKLLKDE 580
Query: 421 EEIFARPKRTWFVTE 435
+ +R+WF T+
Sbjct: 581 NK---STQRSWFQTQ 592
>gi|403217172|emb|CCK71667.1| hypothetical protein KNAG_0H02520 [Kazachstania naganishii CBS
8797]
Length = 754
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/454 (47%), Positives = 313/454 (68%), Gaps = 16/454 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRP+L+ LGY+KP+PIQ+A IP+AL G+D+ A+TGSGKTAAF +P +ERLL+
Sbjct: 244 LSLSRPVLKGLAHLGYTKPSPIQSATIPVALQGKDVIAGAVTGSGKTAAFMIPIIERLLF 303
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPD 121
+P ++ RV++LTPTRELA+Q+ + +KI QF + + L VGGL+ + QE AL++ PD
Sbjct: 304 KPSKVAMTRVIVLTPTRELAIQISDVAKKIGQFVSGLTFGLAVGGLNLRQQEQALKARPD 363
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR IDH+RNS S ++D + +L+LDEADR+LE GF E+ E++ + P +RQ +LF
Sbjct: 364 IVIATPGRFIDHIRNSASFNVDSVEILVLDEADRMLEEGFQDELKEIMTMLPSKRQNLLF 423
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ + L+ LSL +P+R+ DP + S LT+E VRIR+ R+ + A+L +L K
Sbjct: 424 SATMNSKIKSLVSLSLRRPVRIMIDPPKQAASKLTQEFVRIRK-RDNLKPALLFNLIRKL 482
Query: 242 FTS---KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
++ ++++F K+ AHRL+I+ GL + AELHG+LTQ QRLE++ F+ V LI
Sbjct: 483 DSNAQKRIVVFVARKETAHRLRIILGLLGMAVAELHGSLTQEQRLESVTRFKSLDVPVLI 542
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLLK 356
TD+A+RGLDI ++ VINY P+ Y+HRVGRTARAGREG +VT V + +R++++
Sbjct: 543 CTDLASRGLDIPKIEVVINYDMPKSHEIYLHRVGRTARAGREGRSVTLVGESSQERAIVR 602
Query: 357 AIAK---------RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAE 407
A K G + R V + + +K++E+ D + A+L EE+EE+ + +AE
Sbjct: 603 AAIKSVEETNQISNNGGRALGRNVDWNQVEETNKLVEKSADTIEAVLVEEKEEKEILRAE 662
Query: 408 MEATKAENMIAHKEEIFARPKRTWFVTEKEKKLA 441
M+ K ENM+ HK+EI ARP+RTWF TE EKK A
Sbjct: 663 MQLKKGENMLKHKKEIQARPRRTWFQTETEKKNA 696
>gi|146417127|ref|XP_001484533.1| hypothetical protein PGUG_03914 [Meyerozyma guilliermondii ATCC
6260]
Length = 705
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 216/450 (48%), Positives = 315/450 (70%), Gaps = 12/450 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LSRPLL+ LGY+ P+ IQAA IP+A+ G+DI A+TGSGKTAA+ +P +ERL+Y
Sbjct: 203 LQLSRPLLKGVGNLGYTVPSAIQAASIPIAMMGKDIVAGAVTGSGKTAAYLIPIIERLIY 262
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPD 121
+P + A RV++LTPTRELA+QV + +K+ QF ++ L VGGL+ + QE L+S PD
Sbjct: 263 KPAAVSATRVIVLTPTRELAIQVCDVGKKLGQFVANLNFGLAVGGLNLRQQEQQLKSRPD 322
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK-RRQTML 180
IVVATPGR+IDH+RNS S +++L VL++DEADR+LE GF E+ E++ L PK +RQTML
Sbjct: 323 IVVATPGRLIDHIRNSPSFSIENLEVLVMDEADRMLEEGFQVELTEILELIPKHKRQTML 382
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL---LSL 237
FSAT+ + +LI+LSL KP+R+ +P + S L +E VRIR+ RE + A+L L L
Sbjct: 383 FSATMNTKIQDLIQLSLDKPVRIMVNPPKQAASKLVQEFVRIRK-REHLKPALLYHLLRL 441
Query: 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
+++++F K+ AHRL+I+ GL +K ELHG+LTQ QRL++++ FR V L
Sbjct: 442 VDPQQQNRIVVFVSRKEMAHRLRIVLGLLGMKVLELHGSLTQEQRLQSVKDFRSLAVPVL 501
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSL- 354
I TD+AARGLDI ++ VIN+ P+ Y+HRVGRTARAGREG ++TFV ++ DRS+
Sbjct: 502 ICTDLAARGLDIPKIEIVINFDMPKTHEIYLHRVGRTARAGREGRSITFVGESNQDRSIV 561
Query: 355 ---LKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEAT 411
+K++ ++ K SR V + + + + I+E +D + +L+EE+ + + +AEM+
Sbjct: 562 KDAIKSLEEQKNGKAVSRTVDWKKVEELNSIVESKKDTIDEVLEEEKLAKEILQAEMQLE 621
Query: 412 KAENMIAHKEEIFARPKRTWFVTEKEKKLA 441
KA N++ H++EI +RPKRTWF +E+EKK A
Sbjct: 622 KASNIMKHEKEIHSRPKRTWFQSEQEKKQA 651
>gi|410078383|ref|XP_003956773.1| hypothetical protein KAFR_0C06420 [Kazachstania africana CBS 2517]
gi|372463357|emb|CCF57638.1| hypothetical protein KAFR_0C06420 [Kazachstania africana CBS 2517]
Length = 739
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/454 (46%), Positives = 307/454 (67%), Gaps = 18/454 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
LNLSRP+L+ +LG++KP+PIQ+A IP+AL G+DI A+TGSGKTAAF +P +ERLLY
Sbjct: 219 LNLSRPVLKGLSSLGFTKPSPIQSATIPIALLGKDIVAGAVTGSGKTAAFMIPIIERLLY 278
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD-IRCCLVVGGLSTKMQETALRSMPD 121
+P ++ + RV+ILTPTRELA+Q+ + +KI F + + L VGGL+ + QE L+S PD
Sbjct: 279 KPAKVASTRVVILTPTRELAIQISDVAKKIGHFVNGLTFGLAVGGLNLRQQEQILKSRPD 338
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR IDH+RNS S +D + +L+LDEADR+LE GF E+ E++ L P RRQ +LF
Sbjct: 339 IVIATPGRFIDHVRNSASFSVDRVEILVLDEADRMLEEGFQDELSEIMTLLPTRRQNLLF 398
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK- 240
SAT+ + +L+ LSL KP+R+ DP + L +E VRIR+ R+ + A+L +L K
Sbjct: 399 SATMNSKIKQLVSLSLKKPVRIMIDPPKQAADRLVQEFVRIRK-RDHLKPALLYNLIRKL 457
Query: 241 --TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
T ++++F K+ AHRL+I+ GL + AELHG+L+Q QRL+++ F+ V LI
Sbjct: 458 DSTGQKRIVVFVSRKEVAHRLRIILGLLGMGVAELHGSLSQEQRLDSVNKFKSLDVPVLI 517
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLLK 356
TD+A+RGLDI ++ VINY P+ Y+HRVGRTARAGREG +VTFV + +R++++
Sbjct: 518 CTDLASRGLDIPKIEIVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQERAIVR 577
Query: 357 AIAKRAGSKLK-----------SRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRK 405
K K R V + + +K++E+ D V IL EE++E+ + +
Sbjct: 578 DAIKSVEDTNKVPKNGHTGRALGRNVDWNQVEETNKVVEKNIDTVDDILVEEKQEKEIIR 637
Query: 406 AEMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 439
AEM+ K +NM+ +K+EI +RP+RTWF TE EKK
Sbjct: 638 AEMQLKKGQNMLKYKDEIQSRPRRTWFQTESEKK 671
>gi|50419843|ref|XP_458454.1| DEHA2C17534p [Debaryomyces hansenii CBS767]
gi|74659385|sp|Q6BTL5.1|DRS1_DEBHA RecName: Full=ATP-dependent RNA helicase DRS1
gi|49654120|emb|CAG86536.1| DEHA2C17534p [Debaryomyces hansenii CBS767]
Length = 771
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 213/453 (47%), Positives = 310/453 (68%), Gaps = 17/453 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LSRP+L+ LGY+KP+PIQ+ACIP+AL G+DI A+TGSGKTAA+ +P +ERLLY
Sbjct: 263 LQLSRPVLKGLSQLGYTKPSPIQSACIPIALLGKDIVAGAVTGSGKTAAYMIPIIERLLY 322
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPD 121
+P +I + RV++L PTRELA+QV + +KI QF ++ L VGGL+ + QE L++ PD
Sbjct: 323 KPAKISSTRVIVLAPTRELAIQVCDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLKTRPD 382
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK-RRQTML 180
IV+ATPGR+IDH+RNS S +D L VL++DEADR+L+ GF AE+ E++ L P+ +RQT+L
Sbjct: 383 IVIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQAELTEILSLIPRHKRQTLL 442
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
+SAT+ + +LI+LSL KP+R+ DP L +E VRIR+ R+ + A+L L
Sbjct: 443 YSATMNTKIQDLIQLSLQKPVRVMIDPPKSAAIKLVQEFVRIRK-RDHLKPALLFQLIKS 501
Query: 241 TFTS---KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
S ++++F K++AH+L+I+ GL ++ +ELHG+LTQ QRL ++ F+ V L
Sbjct: 502 VDPSQQNRIVVFVARKESAHKLRIILGLLGMRVSELHGSLTQEQRLASVNDFKNLTVPVL 561
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN--DRSLL 355
I TD+AARGLDI ++ VINY P+ Y+HRVGRTARAGREG ++TFV ++ DR+++
Sbjct: 562 ICTDLAARGLDIPKIEIVINYDMPKTHEIYLHRVGRTARAGREGKSITFVGESTQDRAIV 621
Query: 356 KAIAKRAG---------SKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKA 406
K K K SR V + + + +KI+E + +L EE++ + + A
Sbjct: 622 KDAIKSISEEQARNSKQGKAVSRNVDWKEVEELNKIVESKATVIEEVLDEEKQAKEMLHA 681
Query: 407 EMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 439
EME +KA NMI H++EI +RP+RTWF +EK+KK
Sbjct: 682 EMELSKATNMIKHEKEIQSRPRRTWFESEKDKK 714
>gi|444731361|gb|ELW71716.1| putative ATP-dependent RNA helicase DDX27 [Tupaia chinensis]
Length = 735
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/439 (46%), Positives = 296/439 (67%), Gaps = 23/439 (5%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+
Sbjct: 188 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGT--------------- 232
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
RVL+L PTREL +QVH++ +++AQF I CL VGGL K QE ALR+ PD
Sbjct: 233 -------VTRVLVLVPTRELGIQVHAVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPD 285
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR+IDHL N S L ++ VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 286 VLIATPGRLIDHLHNCPSFHLSNVEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 345
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 346 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT 405
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ I+ GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 406 FTDHVMLFTQTKKQAHRMHIVLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 465
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K
Sbjct: 466 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKA 525
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++ K
Sbjct: 526 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGK 585
Query: 421 EEIFARPKRTWFVTEKEKK 439
E P+R+WF T++E+K
Sbjct: 586 EARDQEPERSWFQTKEERK 604
>gi|260941344|ref|XP_002614838.1| hypothetical protein CLUG_04853 [Clavispora lusitaniae ATCC 42720]
gi|238851261|gb|EEQ40725.1| hypothetical protein CLUG_04853 [Clavispora lusitaniae ATCC 42720]
Length = 748
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/448 (47%), Positives = 307/448 (68%), Gaps = 11/448 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+L+RP+L+ +LGY+KP+PIQ+A IP+AL G+DI A+TGSGKTAA+ +P +ERLLY
Sbjct: 241 LDLARPVLKGLASLGYTKPSPIQSASIPIALLGKDIVAGAVTGSGKTAAYMIPIIERLLY 300
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPD 121
+ ++ + RV+ILTPTRELA+QV + +KI ++ ++ L VGGL+ + QE L++ PD
Sbjct: 301 KSSKVASTRVVILTPTRELAIQVCDVGKKIGRYVNNLTFGLAVGGLNLRQQEQQLKTRPD 360
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK-RRQTML 180
IVVATPGR+IDH+RNS S LD L +L++DEADR+LE GF E+ E++ L PK +RQTML
Sbjct: 361 IVVATPGRLIDHIRNSASFSLDALEILVMDEADRMLEEGFQVELTEILTLIPKHKRQTML 420
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV--LLSLC 238
FSAT+ + +LI+LSL KP+R+ DP + L +E VRIR+ E+ + LL
Sbjct: 421 FSATMNTKIQDLIQLSLNKPVRIMIDPPKAAANKLVQEFVRIRKKDEMKPALLYYLLKSV 480
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+ S++++F K+ AHRL+I+ GL +K +ELHG+LTQ QRL + F+ V LI
Sbjct: 481 DPSQQSRIVVFVSRKETAHRLRIILGLLGMKVSELHGSLTQEQRLNNVNDFKNLTVPVLI 540
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD--NDRSLLK 356
TD+AARGLDI ++ VINY P+ Y+HRVGRTARAGREG ++TFV + DR+++K
Sbjct: 541 CTDLAARGLDIPKIEMVINYDMPKSHEIYLHRVGRTARAGREGRSITFVGEAAADRNIVK 600
Query: 357 AIAK-----RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEAT 411
A K ++ K SR V + + ++++ D V +L+EE+ + + AEME
Sbjct: 601 AAMKSLEESQSQQKAVSRNVDWPKVEVYHNVVQEKNDTVQEVLEEEKSAKEVLAAEMELA 660
Query: 412 KAENMIAHKEEIFARPKRTWFVTEKEKK 439
KA+N+I + ++I +RP+RTWF +E EKK
Sbjct: 661 KADNLIKYGKDIQSRPRRTWFESESEKK 688
>gi|448091961|ref|XP_004197457.1| Piso0_004710 [Millerozyma farinosa CBS 7064]
gi|448096550|ref|XP_004198488.1| Piso0_004710 [Millerozyma farinosa CBS 7064]
gi|359378879|emb|CCE85138.1| Piso0_004710 [Millerozyma farinosa CBS 7064]
gi|359379910|emb|CCE84107.1| Piso0_004710 [Millerozyma farinosa CBS 7064]
Length = 719
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 218/453 (48%), Positives = 315/453 (69%), Gaps = 17/453 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LSRP+LRA LGY KP+ IQ++ IP+AL G+DI A+TGSGKTAA+ +P +ERLLY
Sbjct: 211 LQLSRPILRALGQLGYVKPSAIQSSAIPIALLGKDIVAGAVTGSGKTAAYMIPIIERLLY 270
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPD 121
+P +I AIRV++LTPTRELA+QVH + +KI +F ++ L VGGL+ + QE L+S PD
Sbjct: 271 KPSKISAIRVIVLTPTRELAIQVHDVGKKIGRFVNNLNFGLAVGGLNLRQQEQQLKSRPD 330
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK-RRQTML 180
IV+ATPGR+IDH+RNS S +D L ++++DEADR+L+ GF AE+ E++ L PK +RQT+L
Sbjct: 331 IVIATPGRLIDHIRNSPSFSIDTLEIMVIDEADRMLDEGFQAELTEILSLVPKQKRQTLL 390
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+ + +LI+LSL +P+R+ DP + L +E VRIR+ R+ + A+L L +
Sbjct: 391 FSATMNTKIQDLIQLSLDRPVRIMIDPPKATTAKLVQEFVRIRK-RDHLKPALLFELLNT 449
Query: 241 TFTS---KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
+S ++++F TK AHRL++L G+ LK +ELHG LTQ QRL+ + F++ V L
Sbjct: 450 IDSSNQDRIVVFVSTKGTAHRLRVLLGVLGLKVSELHGALTQEQRLKNVTDFKELKVSVL 509
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLL 355
I TD+AARGLDI ++ VINY P+ Y+HRVGRTARAGREG ++T V + +DRS++
Sbjct: 510 ICTDLAARGLDIPKIEFVINYDMPKTHEIYLHRVGRTARAGREGRSITLVGESSHDRSIV 569
Query: 356 KAIAKRAGS---------KLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKA 406
K K + K+ SR + + +K+I+ ED + IL+EE+E + + +A
Sbjct: 570 KDALKSVENEPQNGAKKGKIVSRNIDWPRVEDINKVIDNKEDTIQEILEEEKEAKEMLQA 629
Query: 407 EMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 439
EME +KA+N+I H++EI ARPKRTWF + K+ +
Sbjct: 630 EMELSKADNLIKHRKEIMARPKRTWFESSKDDQ 662
>gi|339250128|ref|XP_003374049.1| putative DEAD/DEAH box helicase [Trichinella spiralis]
gi|316969700|gb|EFV53757.1| putative DEAD/DEAH box helicase [Trichinella spiralis]
Length = 693
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/448 (46%), Positives = 307/448 (68%), Gaps = 9/448 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E+NLSR L +A ++ Y PTPIQ+ACIP+AL G+DIC A TG+GKT A+ +P LERLL
Sbjct: 156 EMNLSRSLNKAISSMNYVNPTPIQSACIPVALLGKDICACAATGTGKTCAYMIPILERLL 215
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
++P RVL++ PTRELA+QV+ +A++T I L GG+ K QE ALR PD
Sbjct: 216 FKPVGRRITRVLVMVPTRELAMQVYETGTTLAKYTSISIALSTGGMDLKSQEAALRLNPD 275
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+V+ATPGR+IDHL NS +L+ + +L+LDEADR+L+ F ++ E++RLC RQ MLF
Sbjct: 276 VVIATPGRLIDHLHNSPGFNLNGVEILVLDEADRMLDEHFEEQMLEIMRLCSPTRQAMLF 335
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ V +L +SL KP++L + + + L ++ VRIR+ RE ++EA L +L ++
Sbjct: 336 SATMTDKVKDLASVSLKKPVKLFVNENTEMALNLRQQFVRIRKERECSREASLAALLKRS 395
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FTSKV++F+GTK+ HRL++L GL ++ AELHGNL+QAQR++ALE F+K VD L+ATD
Sbjct: 396 FTSKVLLFAGTKEVCHRLRLLLGLLGIRVAELHGNLSQAQRIDALEQFKKGVVDVLVATD 455
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARG+D+ GV+TVINY P YVHRVGRTARAGR G AV+FV+++DR L+K I K
Sbjct: 456 VAARGIDVQGVKTVINYQMPHVFKLYVHRVGRTARAGRSGCAVSFVSEDDRKLVKEIVKH 515
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 421
+ +K RI+ + ++ ++I+++ ++ I++EE++ER L AE + +A+ + +
Sbjct: 516 CPTSIKRRILNKDAVESCQRMIDELLPEIDRIVEEEKQERQLSIAEKQIAQAKAKLENDH 575
Query: 422 ---------EIFARPKRTWFVTEKEKKL 440
+ P+R WF T +KL
Sbjct: 576 HQAGATTSSKANNNPQRVWFQTPVAQKL 603
>gi|50311527|ref|XP_455788.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74660268|sp|Q6CJV1.1|DRS1_KLULA RecName: Full=ATP-dependent RNA helicase DRS1
gi|49644924|emb|CAG98496.1| KLLA0F15752p [Kluyveromyces lactis]
Length = 748
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 216/448 (48%), Positives = 310/448 (69%), Gaps = 12/448 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRP+L+ +LGY+ P+PIQ+A IP+AL G+DI A+TGSGKTAAF +P +ERLLY
Sbjct: 238 LSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 297
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD-IRCCLVVGGLSTKMQETALRSMPD 121
+P I + RV++LTPTRELA+QV + + I +F + + L VGGL+ + QE AL++ PD
Sbjct: 298 KPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPD 357
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR IDHLRNS S +D + +L++DEADR+LE GF E+ E++ L P +RQT+LF
Sbjct: 358 IVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQTLLF 417
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK- 240
SAT+ + +LI LSL KP+R+ DP + LT+E +RIR+ R+ + A+L L K
Sbjct: 418 SATMNSKIKQLISLSLKKPVRIMIDPPKQAADKLTQEFIRIRK-RDHLKPALLYQLIRKL 476
Query: 241 --TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
T ++++F K+ AH+L+I+ GL ++ ELHG+LTQ QRL+++ F+ V LI
Sbjct: 477 DNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLI 536
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSL-- 354
TD+A+RGLDI ++ VIN+ P+ Y+HRVGRTARAGREG +VTFV + DRS+
Sbjct: 537 CTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVR 596
Query: 355 --LKAIAKRAGS-KLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEAT 411
++++ + A S K SR V + + + +I D V I++EE++E+ + +AEME
Sbjct: 597 SAIRSVEENAESGKALSRNVDWTQVEQVNSLIGAKGDVVEEIIEEEKQEKEILRAEMELR 656
Query: 412 KAENMIAHKEEIFARPKRTWFVTEKEKK 439
K ENM+ HKEEI ARP+RTWF +E EKK
Sbjct: 657 KGENMLKHKEEISARPRRTWFQSEAEKK 684
>gi|254571715|ref|XP_002492967.1| Nucleolar DEAD-box protein required for ribosome assembly and
function [Komagataella pastoris GS115]
gi|238032765|emb|CAY70788.1| Nucleolar DEAD-box protein required for ribosome assembly and
function [Komagataella pastoris GS115]
gi|328353020|emb|CCA39418.1| ATP-dependent RNA helicase DDX27 [Komagataella pastoris CBS 7435]
Length = 761
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 214/443 (48%), Positives = 307/443 (69%), Gaps = 12/443 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRP+L+ LGY+KP+PIQ+A IP+ L G+DI A TGSGKTAA+ +P +ERLL+
Sbjct: 252 LSLSRPVLKGLSTLGYTKPSPIQSASIPIGLLGKDIVAGAQTGSGKTAAYMIPIIERLLF 311
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD-IRCCLVVGGLSTKMQETALRSMPD 121
+P +I A RV++LTPTRELA+QV+ + +KI+QF + I L VGGL+ + QE LR PD
Sbjct: 312 KPSKISATRVVVLTPTRELAIQVNDVGKKISQFVNGIEFGLAVGGLNLRKQEQELRKRPD 371
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR IDH+RNS S ++ + +L++DEADR+LE GF E+ E++ L P ++QTMLF
Sbjct: 372 IVIATPGRFIDHIRNSPSFSVESVEILVIDEADRMLEDGFQEELKEILTLLPGKKQTMLF 431
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ + +LI+LSL KP+R+ DP + S L +E VR+R+ E+ + A+L + +K
Sbjct: 432 SATMNNSIKDLIQLSLHKPVRIMIDPPKQAVSGLVQEFVRLRKNLEM-KPALLFDILTKV 490
Query: 242 FTS---KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
S ++++F K AH+L+I+ GL LK +ELHG+LTQ QRL+++ F+ V LI
Sbjct: 491 NPSQQHRIVVFIARKMDAHKLRIILGLLGLKVSELHGSLTQEQRLKSITDFKNLTVPILI 550
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND------R 352
TD+A+RGLDI ++ VINY P+ Y+HRVGRTARAGREG ++TFV++++ R
Sbjct: 551 CTDLASRGLDIPKIEVVINYDMPKTYDIYLHRVGRTARAGREGRSITFVSESNQDRAIVR 610
Query: 353 SLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATK 412
+K IA A ++ R V SI K ++IE+ + + IL EE+EE+ +AEME K
Sbjct: 611 EAMKGIAT-AKNRALGRNVDWDSIEKIHQLIEEKAETIGDILSEEKEEKQFLRAEMEVRK 669
Query: 413 AENMIAHKEEIFARPKRTWFVTE 435
EN++ H EEI +RPKRTWF +E
Sbjct: 670 GENILHHGEEIMSRPKRTWFQSE 692
>gi|365759503|gb|EHN01286.1| Drs1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 737
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 215/450 (47%), Positives = 305/450 (67%), Gaps = 14/450 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRP+L+ LGY P+PIQ+A IP+AL G+DI A+TGSGKTAAF +P +ERLLY
Sbjct: 221 LSLSRPVLKGLANLGYVMPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 280
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPD 121
+P +I + RV++L PTRELA+QV + ++IA+F I L VGGL+ + QE L+S PD
Sbjct: 281 KPAKIASTRVIVLLPTRELALQVADVGKQIARFVPSITFGLAVGGLNLRQQEQMLKSRPD 340
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR IDH+RNS S ++D + +L++DEADR+LE GF E++E++ L P RQ +LF
Sbjct: 341 IVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSSRQNLLF 400
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK- 240
SAT+ + L+ LSL +P+R+ DP K + LT+E VRIR+ R+ + A++ +L K
Sbjct: 401 SATMNSKIKSLVSLSLKRPVRIMIDPPKKAATKLTQEFVRIRK-RDHLKPALIFNLIRKL 459
Query: 241 --TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
++++F K++AHRL+I+ GL + ELHG+LTQ QRL+++ F+ V LI
Sbjct: 460 DPMAQKRIVVFVARKESAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVSKFKNLEVPVLI 519
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLLK 356
TD+A+RGLDI ++ VINY P+ Y+HRVGRTARAGREG +VTFV + DRS+++
Sbjct: 520 CTDLASRGLDIPKIEVVINYDMPKSHEVYLHRVGRTARAGREGRSVTFVGESSQDRSIVR 579
Query: 357 AIAKRA-------GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 409
A K K R V + K +K++E M D + IL EE+EE+ + +AEM+
Sbjct: 580 AAIKSVEENKSLTQGKALGRNVDWVQVEKTNKLVESMGDTIEEILVEEKEEKEILRAEMQ 639
Query: 410 ATKAENMIAHKEEIFARPKRTWFVTEKEKK 439
K ENM+ HK+EI ARP+RTWF E +KK
Sbjct: 640 LRKGENMLKHKKEIQARPRRTWFQNESDKK 669
>gi|358377688|gb|EHK15371.1| hypothetical protein TRIVIDRAFT_196232 [Trichoderma virens Gv29-8]
Length = 1380
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 218/445 (48%), Positives = 288/445 (64%), Gaps = 50/445 (11%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRP+LR +G+SKPTPIQA IP+AL G+D+ G A+TGSGKTAAF LP LERLLY
Sbjct: 248 MSLSRPILRGITTVGFSKPTPIQAKTIPIALMGKDLVGGAVTGSGKTAAFVLPILERLLY 307
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK+IP RV+ILTPTRELA+Q H++ K+A TDI+ L VGGLS K QE LR PD+
Sbjct: 308 RPKKIPTTRVVILTPTRELAIQCHAVATKLAAHTDIKFTLAVGGLSLKAQEVELRLRPDV 367
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D + +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 368 IIATPGRFIDHMRNSASFSVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFS 427
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD LIK+ L KP+R+ D K TLT+E VR+R RE + L
Sbjct: 428 ATMTSTVDRLIKVGLNKPVRVMVDSQKKTAGTLTQEFVRLRPGREEKRMGYL-------- 479
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
R+ ++E FR V +L+ATD+
Sbjct: 480 ---------------------------------------RIASVESFRDGKVCYLLATDL 500
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI GV TVINY P+ + YVHRVGRTARAGR G +VT + DR ++KA K
Sbjct: 501 ASRGLDIKGVDTVINYEAPQSVEIYVHRVGRTARAGRHGTSVTLAAEPDRKVVKAAVKAG 560
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
GSK+ SR++ + KW I++M+D++A I +EE+EER L + EM+ K EN+I H
Sbjct: 561 KAQGSKIISRVIEVKDADKWQAEIDEMDDEIAEIEKEEKEERQLAQVEMQIKKGENIIEH 620
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKA 444
+ EI +RPKRTWF T+++KK A +A
Sbjct: 621 EAEIKSRPKRTWFETQQDKKNAKQA 645
>gi|401840824|gb|EJT43489.1| DRS1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 758
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 215/450 (47%), Positives = 305/450 (67%), Gaps = 14/450 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRP+L+ LGY P+PIQ+A IP+AL G+DI A+TGSGKTAAF +P +ERLLY
Sbjct: 242 LSLSRPVLKGLANLGYVTPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 301
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPD 121
+P +I + RV++L PTRELA+QV + ++IA+F I L VGGL+ + QE L+S PD
Sbjct: 302 KPAKIASTRVIVLLPTRELALQVADVGKQIARFVPSITFGLAVGGLNLRQQEQMLKSRPD 361
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR IDH+RNS S ++D + +L++DEADR+LE GF E++E++ L P RQ +LF
Sbjct: 362 IVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSSRQNLLF 421
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK- 240
SAT+ + L+ LSL +P+R+ DP K + LT+E VRIR+ R+ + A++ +L K
Sbjct: 422 SATMNSKIKSLVSLSLKRPVRIMIDPPKKAATKLTQEFVRIRK-RDHLKPALIFNLIRKL 480
Query: 241 --TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
++++F K++AHRL+I+ GL + ELHG+LTQ QRL+++ F+ V LI
Sbjct: 481 DPMAQKRIVVFVARKESAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVSKFKNLEVPVLI 540
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLLK 356
TD+A+RGLDI ++ VINY P+ Y+HRVGRTARAGREG +VTFV + DRS+++
Sbjct: 541 CTDLASRGLDIPKIEVVINYDMPKSHEVYLHRVGRTARAGREGRSVTFVGESSQDRSIVR 600
Query: 357 AIAKRA-------GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 409
A K K R V + K +K++E M D + IL EE+EE+ + +AEM+
Sbjct: 601 AAIKSVEENKSLTQGKALGRNVDWVQVEKTNKLVESMGDTIEEILVEEKEEKEILRAEMQ 660
Query: 410 ATKAENMIAHKEEIFARPKRTWFVTEKEKK 439
K ENM+ HK+EI ARP+RTWF E +KK
Sbjct: 661 LRKGENMLKHKKEIQARPRRTWFQNESDKK 690
>gi|326473339|gb|EGD97348.1| ATP-dependent RNA helicase DRS1 [Trichophyton tonsurans CBS 112818]
Length = 700
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 191/358 (53%), Positives = 260/358 (72%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRP+LR ++G+S PTPIQ IP+AL G+D+ G A+TGSGKT AF +P LERLLY
Sbjct: 301 LSLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIVPILERLLY 360
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RP+++P RV IL PTRELAVQ +++ K+A FTDI C +VGG S + QE L+ PD+
Sbjct: 361 RPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDV 420
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 421 IIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFAEELNEILTTIPKSRQTMLFS 480
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD+LI++ L KP+RL D + TL +E VR+R RE + L+ LC +
Sbjct: 481 ATMTNSVDKLIRVGLNKPVRLMVDSKKQTVGTLVQEFVRLRPGREDKRLGYLMFLCKTVY 540
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+++VI+F K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR V +L+ATD+
Sbjct: 541 SNRVIVFFRQKKEAHRVRIVFGLMGLKAAELHGSMSQEQRIKSVEDFRDAKVSYLLATDL 600
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
A+RGLDI GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++K K
Sbjct: 601 ASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKEAVK 658
>gi|401624697|gb|EJS42747.1| drs1p [Saccharomyces arboricola H-6]
Length = 747
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 212/450 (47%), Positives = 306/450 (68%), Gaps = 14/450 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRP+L+ +LGY KP+PIQ+A IP+AL G+DI A+TGSGKTAAF +P +ERLLY
Sbjct: 231 LSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 290
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPD 121
+P +I A RV++L PTRELA+QV + ++IA+F I L VGGL+ + QE L++ PD
Sbjct: 291 KPAKIAATRVIVLLPTRELAIQVADVGKQIARFLPGITFGLAVGGLNLRQQEQLLKTRPD 350
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR IDH+RNS S ++D + +L++DEADR+LE GF E+ E++ L P RQ +LF
Sbjct: 351 IVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELSEIMGLLPSNRQNLLF 410
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK- 240
SAT+ + L+ LSL +P+R+ DP + + LT+E VRIR+ R+ + ++L +L K
Sbjct: 411 SATMNSKIKSLVSLSLKRPVRIMIDPPKQAAARLTQEFVRIRK-RDHLKPSLLFNLIRKL 469
Query: 241 --TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
++++F K+ AHRL+I+ GL + ELHG+LTQ QRL+++ F+ V L+
Sbjct: 470 DPMGQKRIVVFVARKETAHRLRIVMGLLGMGVGELHGSLTQEQRLDSVNKFKNLEVPVLV 529
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLLK 356
TD+A+RGLDI ++ V+NY P+ Y+HRVGRTARAGREG +VT V + DRS+++
Sbjct: 530 CTDLASRGLDIPKIEVVVNYDMPKSYEIYLHRVGRTARAGREGRSVTLVGESSQDRSIVR 589
Query: 357 AIAKRA-------GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 409
A K K RIV I + +K++E M + + IL EE+EE+ + +AEM+
Sbjct: 590 AAIKSVEEDKSLTQGKALGRIVDWVQIEETNKLVESMSNTIEEILVEEKEEKEILRAEMQ 649
Query: 410 ATKAENMIAHKEEIFARPKRTWFVTEKEKK 439
K ENM+ HK+EI ARP+RTWF +E +KK
Sbjct: 650 LRKGENMLKHKKEIQARPRRTWFQSESDKK 679
>gi|170083961|ref|XP_001873204.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650756|gb|EDR14996.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 355
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/341 (57%), Positives = 264/341 (77%), Gaps = 2/341 (0%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+NLSRPLL++ +LG++KPTPIQAA IP+AL G+D+ G+A+TGSGKTAAF +P +ERLLY
Sbjct: 1 MNLSRPLLKSIASLGFNKPTPIQAAAIPVALLGKDVVGNAMTGSGKTAAFIIPMVERLLY 60
Query: 63 R--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
R K+ A R L+L PTRELAVQ + K++ TDI+ CL+VGGLS K QE ALR+ P
Sbjct: 61 REKGKKAAATRCLVLVPTRELAVQCFDVGVKLSTHTDIQLCLLVGGLSLKSQEVALRARP 120
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+ATPGR+IDH+RNS + LD + +L+LDEADR+L GF+ E+ E+++ CP RQTML
Sbjct: 121 DIVIATPGRLIDHIRNSPAFTLDAIDILVLDEADRMLSDGFADELAEIIKSCPVSRQTML 180
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T+ VDEL+K+SL KP+RL DP L +E VR+R ++ + A+L++LC +
Sbjct: 181 FSATMTDSVDELVKMSLNKPVRLFVDPRKATARGLVQEFVRVRAGKDSERSALLVALCKR 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF ++VIIF +K+ AH+++I+F L LK ELHG+L+Q QRL+AL+LFR VDFL+AT
Sbjct: 241 TFKNRVIIFLRSKKLAHQMRIVFSLLGLKCEELHGDLSQEQRLKALQLFRDGQVDFLMAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREG 341
D+A+RGLDI GV+T+INY P L+ Y+HRVGRTARAG++G
Sbjct: 301 DLASRGLDIKGVETIINYDMPGQLSQYLHRVGRTARAGKQG 341
>gi|324505328|gb|ADY42291.1| ATP-dependent RNA helicase DDX27 [Ascaris suum]
Length = 688
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/431 (47%), Positives = 284/431 (65%), Gaps = 6/431 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+NLSRP+L+A A G++KPTPIQAACIPLAL GRD+C A TG+GKTAAF LP LERLL+
Sbjct: 150 MNLSRPMLKAVGACGFTKPTPIQAACIPLALAGRDLCACAATGTGKTAAFMLPILERLLF 209
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+PK+ RVL+L PTRELA+QV + ++QF+ + CL GGL K QE ALR PDI
Sbjct: 210 KPKQKSVTRVLVLVPTRELAMQVFHVTRLLSQFSQVEICLCAGGLDIKAQEAALRLGPDI 269
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V+ATPGR+IDHL N+ + L D+ VL+LDEADR+L+ F+ ++ EL+RLC RQT+LFS
Sbjct: 270 VIATPGRLIDHLHNAPNFSLHDIEVLVLDEADRMLDEAFADQMKELIRLCSANRQTLLFS 329
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T+ +++L +SL P+R+ + + + L +E +RIR E +E+++++L ++ F
Sbjct: 330 ATMTDQIEQLAAVSLKNPVRIFINENTETALNLRQEFIRIRENHEHERESIVVALVTRIF 389
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
++F TK+A RL I+ GL +K +LH L+Q QR+E L F+ +D LI+TD+
Sbjct: 390 PDHTMLFVQTKRACQRLHIILGLLGIKVGQLHSGLSQTQRVETLSRFKNAELDLLISTDL 449
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI-AKR 361
AARGLDI GV TVIN P L Y+HRVGRTARAGR G +V+ DR LLK I A
Sbjct: 450 AARGLDIEGVLTVINMQMPASLKQYIHRVGRTARAGRVGRSVSLFGAADRKLLKEIVATH 509
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 421
G+ LK R + I +SK I +E+ + + +E + ER LR AE E + E+ +
Sbjct: 510 KGAPLKQRRIDAGVIEAYSKRIAALEESIQRVEEEFKAERALRLAEEELQRGEDKLQGNA 569
Query: 422 EIFARPKRTWF 432
+ KR W
Sbjct: 570 Q-----KRHWM 575
>gi|241957775|ref|XP_002421607.1| ATP-dependent DEAD-box RNA helicase, ribosome assembly, putative
[Candida dubliniensis CD36]
gi|223644951|emb|CAX40951.1| ATP-dependent DEAD-box RNA helicase, ribosome assembly, putative
[Candida dubliniensis CD36]
Length = 592
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 215/459 (46%), Positives = 311/459 (67%), Gaps = 14/459 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LSRP+L+ L ++KPTPIQ+A IP+AL G+DI A TGSGKT A+ +P +ERLLY
Sbjct: 119 LQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLLY 178
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ-FTDIRCCLVVGGLSTKMQETALRSMPD 121
+P + +V+ILTPTRELA+QV+ +K++ ++ L VGGL+ + QE L++ PD
Sbjct: 179 KPST--STKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRPD 236
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK-RRQTML 180
IV+ATPGR+IDH+RNS S + D+ VL++DEADR+LE GF E+ E++ L PK +RQT+L
Sbjct: 237 IVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQEELTEILSLIPKHKRQTLL 296
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+ + +LI+LSL KP+R+ DP + S L ++ VRIR+ R+ + A+L L K
Sbjct: 297 FSATMNTRIQDLIQLSLQKPVRIMIDPPKQVASKLLQQFVRIRK-RDHLKPALLYQLL-K 354
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+++V++F K+ AH+L+I+ GL LK +ELHG L+Q QRL+ ++ F+ V LI T
Sbjct: 355 GVSTRVVVFVARKETAHKLRIVLGLLGLKVSELHGALSQEQRLQNVKNFKSLDVPVLICT 414
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLLKA- 357
D+AARGLDI ++ VINY P+ Y+HRVGRTARAGR+G ++TFV + +R+++KA
Sbjct: 415 DLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFVGESSQERAIVKAA 474
Query: 358 -IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENM 416
+ + +K AEQ+ SKII E + +LQEE+E + L +AEME TKA N+
Sbjct: 475 IVNGKGVAKTVDWNQAEQT----SKIISSKESVIDEVLQEEKEAKELLRAEMELTKASNL 530
Query: 417 IAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGS 455
I H++EI +RPKRTWF E + L K + +K K +
Sbjct: 531 IKHEQEIHSRPKRTWFKGEVMEHLTKHGKKVNAKKRKAN 569
>gi|393910125|gb|EJD75750.1| DEAD box polypeptide 27 [Loa loa]
Length = 684
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/433 (46%), Positives = 284/433 (65%), Gaps = 7/433 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSR LL+A A G+++PT IQ+ CIPLAL GRD+C + TG+GKTAAF LP LERLL
Sbjct: 145 QMNLSRALLKAITACGFTEPTRIQSTCIPLALAGRDLCACSATGTGKTAAFMLPVLERLL 204
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
YRP++ RV++LTPTRELA+Q + +++QF I CL GGL K QE ALR PD
Sbjct: 205 YRPQQKAMTRVVVLTPTRELAIQTFQVSRQLSQFMRIDICLCAGGLDLKTQEAALRQRPD 264
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR+IDHL N+ + L ++ +L+LDEADR+L+ F+ ++ E++ LC + RQTMLF
Sbjct: 265 IVIATPGRLIDHLHNAPNFSLVNVEILVLDEADRMLDEAFADQMKEIIHLCAQNRQTMLF 324
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ V+EL +SL P++L + + L +E VRIR E ++E ++ L ++
Sbjct: 325 SATMTDQVEELAAVSLKNPVKLFITGNTETALNLRQEFVRIRESHETDRECIVAGLVTRN 384
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F IIF TK+ RL I+ GL +K +LH LTQ QR+EAL F+K +D L++TD
Sbjct: 385 FPDHTIIFVKTKRTCRRLHIVLGLLGVKVGQLHSGLTQRQRVEALFRFKKAELDVLVSTD 444
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI--A 359
+AARGLD+ GV+TVIN P L YVHRVGRTARAGR G +++ V +++R +LK I +
Sbjct: 445 LAARGLDVEGVKTVINMDMPSTLKQYVHRVGRTARAGRVGRSISLVGESERKILKEIIAS 504
Query: 360 KRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
+ G LK R+++ + + IE +E+ + I QEE ER LR A+ E + + +
Sbjct: 505 NKGGGCLKQRLISANVVEAYKNRIESLEESIERIRQEEEVERTLRLAQEELQRGKTKLEG 564
Query: 420 KEEIFARPKRTWF 432
E KR W
Sbjct: 565 NVE-----KRCWI 572
>gi|391340178|ref|XP_003744422.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
[Metaseiulus occidentalis]
Length = 721
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 207/445 (46%), Positives = 296/445 (66%), Gaps = 9/445 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRPLL+A A+ + PTPIQ + IP+AL GRDI A TG+GKTAAF LP LERLLY
Sbjct: 149 MDLSRPLLKALTAMKFVNPTPIQRSAIPVALGGRDIYACAATGTGKTAAFMLPVLERLLY 208
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
R + RV+++ PTREL+VQV+ + ++AQFT I L GGL K+QE+ LR PDI
Sbjct: 209 RSRGEIVTRVIVVVPTRELSVQVYQVSIQLAQFTSINVALATGGLDLKVQESHLRQNPDI 268
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR+IDHL+N+ + +L ++ V+ILDEAD+LLE F+ ++ E+++ C RQTMLFS
Sbjct: 269 IIATPGRLIDHLQNTPTFNLHNIEVMILDEADKLLEDQFAEQLKEIIKQCAPTRQTMLFS 328
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+++ V +L KLSL P+RL + + L +E VRIR RE ++E +L +L ++ F
Sbjct: 329 ATMSDRVQDLAKLSLKDPVRLFLNNNTDVALNLRQEFVRIRSQREGDREPILCALVTRYF 388
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+ I+F TK+ AHR++IL L ++ ELH L Q QR+EAL+ F + VD L+ TD+
Sbjct: 389 GNHSIVFVQTKKLAHRIRILLELLGVQVEELHSGLNQTQRIEALKRFTLEEVDVLVTTDL 448
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
ARGLDI V+TVINY P L YVHRVGRTARAG+ G +V+ V D +R +LK I ++A
Sbjct: 449 TARGLDIKDVRTVINYTLPPTLQQYVHRVGRTARAGKVGRSVSLVGDQERKVLKEIIRKA 508
Query: 363 GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER---ILRKAEMEATKAENMIAH 419
+ +K RIV Q I K+ + IE +E+ + A+ +EE+ ER +++ E E K ++ +
Sbjct: 509 KTPVKQRIVDPQVIKKFVERIESVEESMRAVFEEEKIERNMKLIQTEEEEVDKIKDKLHD 568
Query: 420 KEEIFARP------KRTWFVTEKEK 438
+E R KR+WF T E+
Sbjct: 569 RERSKLRATNNDPVKRSWFQTPNER 593
>gi|50547049|ref|XP_500994.1| YALI0B16896p [Yarrowia lipolytica]
gi|74660102|sp|Q6CEB8.1|DRS1_YARLI RecName: Full=ATP-dependent RNA helicase DRS1
gi|49646860|emb|CAG83247.1| YALI0B16896p [Yarrowia lipolytica CLIB122]
Length = 753
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 208/455 (45%), Positives = 314/455 (69%), Gaps = 9/455 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
LNLSRP+++ ALGY PTPIQ+ IP+AL G+D+ A+TGSGKTAA+ +P LERLLY
Sbjct: 257 LNLSRPVMKGISALGYQAPTPIQSRTIPIALMGKDLVAGAVTGSGKTAAYIIPVLERLLY 316
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPD 121
+ ++ A +V++LTPTREL++QV + +K+AQ+ + +R L VGGL+ ++QE L++ P+
Sbjct: 317 KSSKVAATKVVVLTPTRELSIQVADVGKKLAQYVSGVRFGLAVGGLNLRVQEQELKTRPE 376
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+V+ATPGR IDH+RNS S ++DD+ +L++DEADR+LE GF E+ E++ L PK+RQT+LF
Sbjct: 377 VVIATPGRFIDHVRNSPSFNVDDVEILVIDEADRMLEEGFQQELTEILTLLPKKRQTLLF 436
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ + LI+LSL++P+R+ +P + S L +E VRIR+ R+ + A+L S+ K
Sbjct: 437 SATMNSSISSLIQLSLSRPVRVMINPPKQAASGLVQEFVRIRK-RDHLKPALLASILKKM 495
Query: 242 F-TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+ IIF K+ AHRL+I+ GL ++ ELHG L+Q QRL+++ F+K V L+ T
Sbjct: 496 DKEQRTIIFVARKETAHRLRIMLGLLGVRIGELHGALSQEQRLQSITAFKKLEVPILVCT 555
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD--NDRSL---- 354
D+A+RGLDI ++ V+NY P+ Y+HRVGRTARAGREG ++T V + DR++
Sbjct: 556 DLASRGLDIPKIECVVNYDMPQTHAVYLHRVGRTARAGREGRSITLVGEAAADRAIVREA 615
Query: 355 LKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAE 414
+K++++ K R V + K IE+ D V IL EE+EE+ + +AEME K E
Sbjct: 616 IKSVSESKQGKAVGRNVDWPEVEKLYSKIEEKGDIVNEILAEEKEEKAMLQAEMEVRKGE 675
Query: 415 NMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASI 449
N++ +++EI +RP+RTWF +EKK +DK ++
Sbjct: 676 NLLKYEKEIASRPRRTWFQNAQEKKADETSDKRNL 710
>gi|449018026|dbj|BAM81428.1| probable ATP dependent RNA helicase [Cyanidioschyzon merolae strain
10D]
Length = 703
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 240/536 (44%), Positives = 327/536 (61%), Gaps = 83/536 (15%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS +LR E+LG+ +PTPIQA IP+AL GRD+ GSA+TGSGKTAAF +P +ERL Y
Sbjct: 145 LALSPRMLRVVESLGWMQPTPIQAQAIPVALAGRDVLGSAVTGSGKTAAFLIPIIERL-Y 203
Query: 63 RPKR------------IPAIRVLILTPTRELAVQVHSMIEKI----------------AQ 94
R +R AIRVLI+ PTRELAVQ H+++E I A+
Sbjct: 204 RAQRADGVRFAADASQTAAIRVLIVLPTRELAVQCHAVLEAICDRTARESARRMKQGVAK 263
Query: 95 F------TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVL 148
F T +R L+VGGL+ K QE ALR +PDI++ TPGR+IDH RN+ + LDD+ +L
Sbjct: 264 FVGTPEQTRLRSVLLVGGLALKPQELALRHVPDIIIGTPGRIIDHARNAPNFTLDDVEIL 323
Query: 149 ILDEADRLLELGFSAEIHELVRLC---PKRRQTMLFSATLTEDVDELIKLSLT--KPLRL 203
+LDEADRLL++GF E+ E+VRLC RQTMLFSATL V+EL + +L + + +
Sbjct: 324 VLDEADRLLQMGFMDELREVVRLCAASAPYRQTMLFSATLDAGVEELARFALAPDRVVTV 383
Query: 204 SADPSAKRPSTLTEEVVRIRRMREVNQE---------------------AVLLSLCSKTF 242
D + TL +E V++ +M EV E A+LL+LCS++F
Sbjct: 384 RVDATFDLVGTLVQEFVKL-QMPEVLVEPAQDTRDTLTHAEQVVQTERAALLLALCSRSF 442
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK-QHVDFLIATD 301
T +VI+F K+ AH KI+F L L+AAELHGNLTQAQRL+ALE FR + DFL+ TD
Sbjct: 443 TRRVIVFFARKRTAHLFKIIFDLVGLRAAELHGNLTQAQRLDALEAFRTCTNADFLLCTD 502
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND---RSLLKAI 358
+AARGLDI GV+TV+NY P+D+ YVHRVGRTARAG+ G AV+ D R LL+ +
Sbjct: 503 LAARGLDIHGVETVLNYELPKDIREYVHRVGRTARAGKHGRAVSIFQQTDRKERHLLRRL 562
Query: 359 ----------AKRAGSKLKSRIVAEQSIT-----KWSKIIEQMEDQVAAILQEEREERIL 403
A R + + + ++ E+ I +W + + D V L++ERE R L
Sbjct: 563 REQARRYRVDALRGDAPVPAPVLLERRIPATVIREWRDRLHSLLDSVREKLRQEREHREL 622
Query: 404 RKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADK--ASIEKGKGSGN 457
+AE KA N++ H++EI+ARP RTWF ++ E+K A D+ AS E+ + S +
Sbjct: 623 ERAERLERKAHNLLIHEQEIYARPPRTWFQSKAERKRAQMVDQEPASKERSERSNS 678
>gi|407919354|gb|EKG12604.1| RNA helicase ATP-dependent DEAD-box conserved site [Macrophomina
phaseolina MS6]
Length = 791
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 219/457 (47%), Positives = 296/457 (64%), Gaps = 31/457 (6%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRP+L+ A+G+S+PTPIQA IP+AL G+D+ G A+TGSGKTAAF +P LERLLY
Sbjct: 280 MSLSRPILKGLAAVGFSEPTPIQAKTIPVALLGKDVVGGAVTGSGKTAAFVIPILERLLY 339
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK++P RV IL PTRELAVQ ++ +K+A FTDI +VGG S + QE L+ PD+
Sbjct: 340 RPKKVPTTRVAILMPTRELAVQCFNVSKKLAAFTDITFAQIVGGFSLREQENILKQRPDV 399
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V+ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 400 VIATPGRFIDHMRNSASFAVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFS 459
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T+ VD+LI++ L +P+RL D S L +E VR+R +E + AVL+ LC K +
Sbjct: 460 ATMTDTVDKLIRVGLNRPVRLMVDAKKATVSGLVQEFVRLRPGKEEKKLAVLMHLCQKVY 519
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T +VIIF K+ AHR H T A+E FR L+ATD+
Sbjct: 520 TDRVIIFFRQKKEAHR---------------HEPRT------AVESFRSHAASHLLATDL 558
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK------ 356
A+RGLDI GV TVINY P+ Y+HRVGRTAR G G + T + DR ++K
Sbjct: 559 ASRGLDIKGVNTVINYGAPQSHDIYLHRVGRTARGGATGRSCTIAAEPDRKVVKAVVKAA 618
Query: 357 ----AIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATK 412
A K A K+ SR V I +W ++ ME +V IL+EE+EE+ + + +ME K
Sbjct: 619 RAQAAQDKAAPPKIVSRQVPFDEIDEWDSKLKDMEAEVEEILKEEKEEKAMAQVDMEIRK 678
Query: 413 AENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASI 449
EN+I H++EI +RPKRTWF +E +KK A A +A +
Sbjct: 679 GENLITHQDEIMSRPKRTWFESEAQKKAAKDAGRAQL 715
>gi|354547460|emb|CCE44195.1| hypothetical protein CPAR2_504190 [Candida parapsilosis]
Length = 604
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 211/461 (45%), Positives = 314/461 (68%), Gaps = 19/461 (4%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL LSRP+L++ ++L ++ PTPIQ++ IP+AL G+DI A TGSGKTAA+ +P +ERL+
Sbjct: 129 ELQLSRPILKSIQSLSFTSPTPIQSSTIPIALLGKDIVAGAQTGSGKTAAYLIPLIERLI 188
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMP 120
+ K + + +ILTPTRELA+QV+ + +K+ QF ++ L VGGL+ + QE L+S P
Sbjct: 189 F--KNATSTKAIILTPTRELAIQVYDVGKKLGQFVKNLSFGLAVGGLNLRQQEQQLKSRP 246
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK-RRQTM 179
DIV+ATPGR+IDH+RNS S ++D+ VL++DEADR+LE GF E+ E++ L PK +RQT+
Sbjct: 247 DIVIATPGRLIDHIRNSPSFSVEDVQVLVIDEADRMLEEGFQEELTEILSLIPKQKRQTL 306
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
LFSAT+ V +L++LSL KP+R+ DP S L ++ VRIR+ RE + A+L L
Sbjct: 307 LFSATMNTKVQDLVQLSLNKPVRVMIDPPKTVASRLEQQFVRIRK-RENLKPALLFQLLR 365
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
K ++++F K+ AH+L+++ GL LK AELHG LTQ QRL ++LF V+ L+
Sbjct: 366 K-LDGRIVVFVSRKEMAHKLRVILGLLGLKVAELHGALTQEQRLANMKLFM-NDVNVLVC 423
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLLKA 357
TD+AARGLDI ++ V+N+ P+ Y+HRVGRTARAGR+G ++TFV ++ DR+++KA
Sbjct: 424 TDLAARGLDI-RIEYVVNFDMPKTYEIYLHRVGRTARAGRKGTSITFVGESNQDRAIVKA 482
Query: 358 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 417
S +R V + +K IE+ E + +LQEE+E + + +AEM+ KA N+I
Sbjct: 483 AINNGRS--VARKVDWNDVEAINKRIEEKESVIDEVLQEEKEAKEILRAEMQLNKASNLI 540
Query: 418 AHKEEIFARPKRTWF-------VTEKEKKLAVKADKASIEK 451
++++I +RPKRTWF +T+ KK+ K KA+ EK
Sbjct: 541 KYEKDIHSRPKRTWFKSDVMGQLTKHGKKVNSKKRKANEEK 581
>gi|406605499|emb|CCH43143.1| ATP-dependent RNA helicase [Wickerhamomyces ciferrii]
Length = 740
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 208/446 (46%), Positives = 310/446 (69%), Gaps = 11/446 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRP+L+ LGY P+PIQ+A IP+AL G+DI A+TGSGKTAA+ +P +ERLLY
Sbjct: 236 LDLSRPILKGLSTLGYQTPSPIQSATIPIALLGKDIIAGAVTGSGKTAAYMIPVIERLLY 295
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD-IRCCLVVGGLSTKMQETALRSMPD 121
+P ++ + RV++LTPTRELA+QV+ + +KI +F + + L VGGL+ + QE L+ PD
Sbjct: 296 KPAKLASTRVIVLTPTRELAIQVNDVGKKIGKFVNGLSFGLAVGGLNLRQQEQELKQRPD 355
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR+IDHLRNS S ++D + +LI+DEADR+LE GF E+ E++ + P +RQT+LF
Sbjct: 356 IVIATPGRIIDHLRNSPSFNVDGVEILIVDEADRMLEEGFQKELTEILDILPTKRQTLLF 415
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK- 240
SAT+ + LI+LSL KP+R+ DP + + L +E VRIR+ R+ + ++L ++ K
Sbjct: 416 SATMNSKIKSLIQLSLKKPVRIMIDPPKQAATGLVQEFVRIRK-RDHLKPSILFNILKKF 474
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
T +++IF K+ AH+L+I+ GL LK +ELHG+LTQ QRL+++ F+ V LI T
Sbjct: 475 TKDQRIVIFVARKEQAHKLRIILGLLGLKVSELHGSLTQEQRLQSINNFKTLTVPILICT 534
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN--DRSLLKAI 358
D+A+RGLDI ++ V+N+ P++ Y+HRVGRTAR GREG +++FV ++ DRS++K
Sbjct: 535 DLASRGLDIPKIEVVLNFDMPKNFEVYLHRVGRTARGGREGKSISFVGESSMDRSIVKDA 594
Query: 359 AKRAG------SKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATK 412
K + +K R V + + + +KIIE + + IL EE+ E+ + +AEME K
Sbjct: 595 IKSSQNMNSKVNKTVGREVNWKEVEEINKIIESKNEILEEILVEEKTEKEMIQAEMELRK 654
Query: 413 AENMIAHKEEIFARPKRTWFVTEKEK 438
EN++ +KEEI +RP+RTWF E EK
Sbjct: 655 GENLLRYKEEIQSRPRRTWFEKESEK 680
>gi|68473179|ref|XP_719395.1| hypothetical protein CaO19.7635 [Candida albicans SC5314]
gi|74656492|sp|Q5ACK7.1|DRS1_CANAL RecName: Full=ATP-dependent RNA helicase DRS1
gi|46441210|gb|EAL00509.1| hypothetical protein CaO19.7635 [Candida albicans SC5314]
gi|238880416|gb|EEQ44054.1| hypothetical protein CAWG_02313 [Candida albicans WO-1]
Length = 613
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 217/461 (47%), Positives = 312/461 (67%), Gaps = 12/461 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LSRP+L+ L ++KPTPIQ+A IP+AL G+DI A TGSGKT A+ +P +ERLLY
Sbjct: 135 LQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLLY 194
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ-FTDIRCCLVVGGLSTKMQETALRSMPD 121
+P + +V+ILTPTRELA+QV+ +K++ ++ L VGGL+ + QE L++ PD
Sbjct: 195 KPST--STKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRPD 252
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK-RRQTML 180
IV+ATPGR+IDH+RNS S + D+ VL++DEADR+LE GF E+ E++ L PK +RQT+L
Sbjct: 253 IVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPKHKRQTLL 312
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+ + +LI+LSL KP+R+ DP S L ++ VRIR+ R+ + A+L L K
Sbjct: 313 FSATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKLLQQFVRIRK-RDQLKPALLYQLL-K 370
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+S+V++F K+ AHRL+I+ GL LK +ELHG LTQ QRL+ ++ F+ V LI T
Sbjct: 371 GVSSRVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKSLEVPVLICT 430
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARGLDI ++ VINY P+ Y+HRVGRTARAGR+G ++TFV ++ + +AI K
Sbjct: 431 DLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFVGESSQE--RAIVK 488
Query: 361 RA--GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 418
A K ++ V + + +K++E E + +L+EE+E + L +AEME TKA N+I
Sbjct: 489 SAIVNGKGVAKTVDWKQAEETNKLLESKESVIDEVLEEEKEAKELLRAEMELTKASNLIK 548
Query: 419 HKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEV 459
H++EI +RPKRTWF E ++L K + +K K NEV
Sbjct: 549 HEQEIHSRPKRTWFKGEVMEQLTKHGKKVNSKKRK--ANEV 587
>gi|448528530|ref|XP_003869731.1| Drs1 nucleolar DEAD-box protein [Candida orthopsilosis Co 90-125]
gi|380354084|emb|CCG23598.1| Drs1 nucleolar DEAD-box protein [Candida orthopsilosis]
Length = 632
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 213/483 (44%), Positives = 319/483 (66%), Gaps = 22/483 (4%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL LSRP+L++ ++L ++ PTPIQ++ IP+AL G+DI A TGSGKTAA+ +P +ERL+
Sbjct: 157 ELQLSRPILKSIQSLSFTSPTPIQSSTIPIALLGKDIVAGAQTGSGKTAAYLIPLIERLI 216
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMP 120
+ K + + +IL PTRELA+QV+ + K+ QF ++ L VGGL+ + QE L+S P
Sbjct: 217 F--KNSTSTKAIILAPTRELAIQVYDVGRKLGQFVKNLSFGLAVGGLNLRQQEQQLKSRP 274
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK-RRQTM 179
DIV+ATPGR+IDH+RNS S ++D+ VL++DEADR+LE GF E+ E++ L PK +RQT+
Sbjct: 275 DIVIATPGRLIDHIRNSPSFSVEDVQVLVIDEADRMLEEGFQEELTEILSLIPKQKRQTL 334
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
LFSAT+ V +L++LSL KP+R+ DP S L ++ VRIR+ RE + A+L L
Sbjct: 335 LFSATMNTKVQDLVQLSLNKPVRVMIDPPKTVASRLEQQFVRIRK-RESLKPALLFQLLR 393
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
K ++++F K+ AH+L+++ GL LK AELHG LTQ QRL ++LF V+ L+
Sbjct: 394 K-LDGRIVVFVSRKEMAHKLRVILGLLGLKVAELHGALTQEQRLANMKLFMGD-VNVLVC 451
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLLKA 357
TD+AARGLDI ++ V+N+ P+ Y+HRVGRTARAGR+G ++TFV ++ DR+++KA
Sbjct: 452 TDLAARGLDI-RIEYVVNFDMPKTYEIYLHRVGRTARAGRKGTSITFVGESNQDRAIVKA 510
Query: 358 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 417
S +R V + +K I++ E V +LQEE+E + + +AEM+ KA N+I
Sbjct: 511 AINNGRS--VARKVDWNDVEAINKRIDEKESVVDEVLQEEKEAKEILRAEMQLNKASNLI 568
Query: 418 AHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRE 477
++++I +RPKRTWF ++ +L K + +K K + ED K EKR +
Sbjct: 569 KYEKDIHSRPKRTWFKSDVMGQLTKHGKKVNSKKRKAN----------EDKKENEKRSYK 618
Query: 478 REK 480
+ K
Sbjct: 619 KTK 621
>gi|331219074|ref|XP_003322214.1| hypothetical protein PGTG_03751 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309301204|gb|EFP77795.1| hypothetical protein PGTG_03751 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 785
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 224/522 (42%), Positives = 327/522 (62%), Gaps = 34/522 (6%)
Query: 4 NLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYR 63
+LSRP+L ++ + PTPIQ IPL L G+D+ S++TGSGKT + +P +ERL++R
Sbjct: 253 SLSRPVLLGLSSMSITSPTPIQRQAIPLGLLGKDLVCSSVTGSGKTLGYMVPIVERLIWR 312
Query: 64 PKRIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
K+ RV+ILTPTRELAVQV + + +A+FTD+ L VGG+ + QE LR P+I
Sbjct: 313 DKKGGGRTRVMILTPTRELAVQVFQVGKLLARFTDLTFSLCVGGMDLRTQEAELRERPEI 372
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V+ TPGR+IDH+RN+ L+ L +L++DEADR+LE GF E+ E++ CP+ RQTMLFS
Sbjct: 373 VIGTPGRVIDHIRNTRGFSLETLEILVIDEADRILEEGFQDELEEIISNCPRSRQTMLFS 432
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR---------RMREVNQEAV 233
AT+ E V +L KLSL KP+R+ DP + LT+E ++++ + +V ++A+
Sbjct: 433 ATVNESVADLAKLSLDKPIRIKIDPPKSTAAGLTQEFLKVKDSASNKKAASLTDVTRQAI 492
Query: 234 LLSLCSKTFTSK--VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 291
L++LC + SK IIF +K AHR+KI+F L +LKA ELHGNL Q QRL AL+ F+
Sbjct: 493 LVTLCKASAFSKGRTIIFFRSKVGAHRMKIIFSLFSLKAEELHGNLNQQQRLAALQKFKD 552
Query: 292 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
FL+ATD+A+RGLDI GV+ VINY P Y+HR+GRTARAG +G A+T V ++D
Sbjct: 553 GETSFLLATDLASRGLDIKGVERVINYEPPTQYDVYLHRIGRTARAGTKGSALTLVGESD 612
Query: 352 RSLLKAIAKR---AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEM 408
R L+K K +K+R + + + +E++ +A I++EE+EE+ LR +EM
Sbjct: 613 RKLIKEARKNCLATQGAIKNRRLDPNLVKDVKEELEKLSSTIAEIIEEEKEEKELRNSEM 672
Query: 409 EATKAENMIAHKEEIFARPKRTWF----VTEKEKKLAVKADKASIEKGKGSGNEVTSAQQ 464
+ K +N+I H++EI +RP RTWF +K KK+ A A+ K Q
Sbjct: 673 QMKKCQNLIEHEDEIKSRPARTWFQSESEKKKSKKIGTTAHTANFAK----------TDQ 722
Query: 465 AEDLKIKEKRKREREKNLPRKERRKLEAAREMLEDEDQVDKL 506
L K KR+R L RK++R R+M ++ED ++L
Sbjct: 723 RSVLPKKTAIKRDRFDGLSRKQKR-----RKMGQEEDAKERL 759
>gi|226500380|ref|NP_001141931.1| uncharacterized protein LOC100274080 [Zea mays]
gi|194706482|gb|ACF87325.1| unknown [Zea mays]
gi|414589948|tpg|DAA40519.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 337
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 212/340 (62%), Positives = 270/340 (79%), Gaps = 8/340 (2%)
Query: 268 LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSY 327
+KAAELHGNLTQAQRLEALELF+K+ VDFLIATDVAARG+DI+GVQTVIN+ACPRD+ +Y
Sbjct: 1 MKAAELHGNLTQAQRLEALELFKKKEVDFLIATDVAARGIDIVGVQTVINFACPRDVKTY 60
Query: 328 VHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQME 387
+HRVGRTARAGREGYAVTFVTD+DR LLKAIAK+AGS+LKSRIVAE+ + + +++IEQ+E
Sbjct: 61 LHRVGRTARAGREGYAVTFVTDDDRCLLKAIAKKAGSQLKSRIVAEKPVAECARLIEQLE 120
Query: 388 DQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKA 447
Q++ I++EER ER RKAEME KAENMIAHK+EI++RPKRTWF TE+EKKL A K
Sbjct: 121 GQISIIIREERVEREARKAEMEIAKAENMIAHKDEIYSRPKRTWFATEREKKLLAAAAKE 180
Query: 448 SIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREMLEDEDQVDKLQ 507
S++ GK + V SA++AEDL++KEKR+RE EKNLPRK+RR+LEA REMLEDED +K +
Sbjct: 181 SLDHGKSTSG-VISAKKAEDLRLKEKRRREHEKNLPRKKRRRLEAQREMLEDEDD-EKTK 238
Query: 508 GSGKDKKEKAGISMVDLAYRRAKAVKAKQKALDAGKIVKSNGKKSKHSSQESNSRAKEMR 567
+ + K+ G S+VD AYR+AK++KA K + K + +HS + N R +EMR
Sbjct: 239 ENDRGKQPMKGQSLVDAAYRKAKSLKAASKRAPGARKGKKEKNERQHSEKAPN-RHEEMR 297
Query: 568 ELFHSDMSEKKQKRTGGIG-----KKPKHSFKSKSRYKRR 602
+LF +DMSE KQ R+ KK ++SFKSK+RYKR+
Sbjct: 298 DLFQNDMSEWKQGRSSKKNNKFAPKKSRNSFKSKARYKRK 337
>gi|367028222|ref|XP_003663395.1| hypothetical protein MYCTH_2118610 [Myceliophthora thermophila ATCC
42464]
gi|347010664|gb|AEO58150.1| hypothetical protein MYCTH_2118610 [Myceliophthora thermophila ATCC
42464]
Length = 1400
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 212/463 (45%), Positives = 293/463 (63%), Gaps = 62/463 (13%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
++LSRP+LR ++G++KPTPIQA IP+AL G+D+ G A+TGSGKTAAF +P LERLLY
Sbjct: 291 MSLSRPILRGLTSVGFTKPTPIQAKTIPIALMGKDVVGGAVTGSGKTAAFIVPILERLLY 350
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RPK++P RV+ILTPTRELA+Q HS+ K+A TDI+ CL VGGLS K+QE LR PD+
Sbjct: 351 RPKKVPTTRVVILTPTRELAIQCHSVATKLASHTDIKFCLAVGGLSLKVQEGELRLRPDV 410
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V+ATPGR IDH+RNS S ++ + +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 411 VIATPGRFIDHMRNSASFAVETVEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFS 470
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T VD+LI++ L KP R+ D + TLT+E V R+R +E +
Sbjct: 471 ATMTSTVDKLIRVGLNKPARIMVDSQKQTAGTLTQEFV---RLRPGREEKRM-------- 519
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+E FR V+FL+ATD+
Sbjct: 520 ------------------------------------------GVEAFRDGKVNFLLATDL 537
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI G+ TVINY P+ L YVHRVGRTARAGR G A+T + DR ++KA K
Sbjct: 538 ASRGLDIKGIDTVINYEAPQSLEIYVHRVGRTARAGRSGVALTLAAEPDRKVVKAAVKAG 597
Query: 363 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 419
G+K+ SR++ KW +++M++++ IL+EE+EE+ L + EM+ K EN+I +
Sbjct: 598 KAQGAKIISRVIDPAEADKWQAQVDEMDEEIEEILREEKEEKQLAQMEMQVKKGENLIKY 657
Query: 420 KEEIFARPKRTWFVTEKEKKLAVKADKASIE------KGKGSG 456
+EEI +RPKRTWF +++ KK A + +A + K KG G
Sbjct: 658 EEEIHSRPKRTWFESQEAKKKAKELGRAELNGIREALKKKGGG 700
>gi|149245944|ref|XP_001527442.1| hypothetical protein LELG_02271 [Lodderomyces elongisporus NRRL
YB-4239]
gi|152013518|sp|A5DY34.1|DRS1_LODEL RecName: Full=ATP-dependent RNA helicase DRS1
gi|146449836|gb|EDK44092.1| hypothetical protein LELG_02271 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 686
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 211/459 (45%), Positives = 313/459 (68%), Gaps = 11/459 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL LSRP+L++ + LG++ PTP+QA+ IP+AL G+DI SA TGSGKTAA+ +P +ERLL
Sbjct: 200 ELQLSRPILKSLQQLGFTVPTPVQASTIPIALLGKDIVASAQTGSGKTAAYLIPIIERLL 259
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMP 120
Y K + + +ILTPTRELA+QVH + K+ QF +++ + VGGLS K QE L++ P
Sbjct: 260 Y-VKNSTSTKAIILTPTRELAIQVHDVGRKLGQFVSNLNFGMAVGGLSLKQQEQQLKTRP 318
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK-RRQTM 179
DIV+ATPGR+IDH+RNS S ++D+ VLI+DEADR+LE GF E+ E++ L PK +RQT+
Sbjct: 319 DIVIATPGRLIDHIRNSPSFSVEDVQVLIIDEADRMLEEGFQEELTEILSLIPKQKRQTL 378
Query: 180 LFSATLTED-VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
LFSAT+ + +L++LSL KP+++S DP S L ++ VRIR+ E+ + +L L
Sbjct: 379 LFSATMNNTKIQDLVQLSLNKPIKVSIDPPRTVASKLEQQFVRIRKREEL--KPAVLYLL 436
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
K + ++F+ TK AH+L+I+ GL L AELHG LTQ QRL ++ F K +V+ LI
Sbjct: 437 LKKLEGRTVVFTRTKVEAHKLRIILGLLGLTVAELHGALTQEQRLANVKAF-KNNVNVLI 495
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN--DRSLLK 356
TD+AARGLD I ++ VINY P+ Y HRVGRTARAGR+G +++FV ++ DR+++K
Sbjct: 496 CTDLAARGLD-IRIEYVINYDMPKTYEIYTHRVGRTARAGRKGTSISFVGESMQDRNIVK 554
Query: 357 AIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENM 416
A + S+ +R + + K I+ E + +++EE++ R + +AEM+ KAEN+
Sbjct: 555 N-AIQFNSRSVARKIDWDEVEKIQTKIKLNEGAIEEVIEEEKQAREIMRAEMQLNKAENL 613
Query: 417 IAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGS 455
+ +++EI +RPKRTWF +E + L K + +K K +
Sbjct: 614 MKYEKEIKSRPKRTWFKSEVMEHLTKHGKKVNAKKRKAN 652
>gi|47211205|emb|CAF90162.1| unnamed protein product [Tetraodon nigroviridis]
Length = 517
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 213/525 (40%), Positives = 326/525 (62%), Gaps = 49/525 (9%)
Query: 54 LPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 113
LP LERL+Y+P+ RVL+L PTREL +QVHS+ ++AQFT I CL VGGL K QE
Sbjct: 2 LPVLERLVYKPRTSQVTRVLVLVPTRELGIQVHSVSRQLAQFTSITTCLAVGGLDLKSQE 61
Query: 114 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 173
ALR+ PD+++ATPGR+IDHL N+ S +L + +LILDEADR+L+ F ++ E++RLC
Sbjct: 62 VALRAGPDVLIATPGRLIDHLHNTPSFELSHIEILILDEADRMLDEYFEEQMKEIIRLCS 121
Query: 174 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV 233
RQTMLFSAT++E+V +L +SL +P+R+ + + L +E VRIR +E ++EAV
Sbjct: 122 YNRQTMLFSATMSEEVKDLAAVSLKQPVRIFVNSNTDVAPYLRQEFVRIRPNKEGDREAV 181
Query: 234 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 293
+ +L ++TF V+ F+ T++ AHRL IL GL LK ELHG L+Q QRLE L F+ +
Sbjct: 182 VAALLTRTFQDHVMCFTQTRKQAHRLHILLGLMGLKVGELHGELSQNQRLENLRRFKDEQ 241
Query: 294 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 353
+D L+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R
Sbjct: 242 IDILVATDVAARGLDIDGVKTVINFTMPSTMKHYVHRVGRTARAGRSGRSVSLVGESERK 301
Query: 354 LLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKA 413
+LK + K A + +K+R++ + I K+ +I ++E V A+++ E+EER E+ A++A
Sbjct: 302 ILKEVVKSAKTSVKARVLPPEVILKFRDLISKLEKDVEAVVKLEKEER-----ELAASEA 356
Query: 414 ENMIAHKE----EIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLK 469
+ +A K+ A+ +R WF T++E+K + ++ A Q DL
Sbjct: 357 KLSVAQKQLDGSNTPAQSQRVWFQTQQERK----------------QSRISKALQEFDLA 400
Query: 470 IKEKRKRE-------REKNLPRKERRKLEAAREMLEDEDQVDKLQGSGKDKKEKAGISMV 522
++ KRKRE R+K L +ER + E + + E + + ++++ K
Sbjct: 401 LRGKRKREKFLKDSKRKKELTPEERAQFEILKAQMFAE------RAAKRERRPK------ 448
Query: 523 DLAYRRAKAVKAKQKALDAGKIVKSNGKKSKHSSQESNSRAKEMR 567
RA+A+ ++ A + VKS G+KS + +++ K ++
Sbjct: 449 -----RARAMVEEEMPSAANRKVKSGGRKSVFDKELTSTNRKSLK 488
>gi|385303016|gb|EIF47118.1| nucleolar dead-box protein required for synthesis of 60s ribosomal
subunits [Dekkera bruxellensis AWRI1499]
Length = 410
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/406 (47%), Positives = 274/406 (67%), Gaps = 11/406 (2%)
Query: 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94
G+D+ A TGSGKTAA+ +P +ERLLY+P + + RV+I+ PTRELA+QV + +I+Q
Sbjct: 2 GKDVVAGAQTGSGKTAAYLIPIIERLLYKPAHVASTRVVIMAPTRELAIQVADVARRISQ 61
Query: 95 F-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEA 153
F + I + VGGLS + QE L+ PDIV+ATPGR IDH+RNS S +D++ +++LDEA
Sbjct: 62 FVSGITIGMAVGGLSLRKQELELKKRPDIVIATPGRFIDHVRNSPSFSVDNVEIMVLDEA 121
Query: 154 DRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPS 213
DR+LE GF AEI E+++L P++RQTMLFSAT+ ++ +LI+LSL KP R+ DP S
Sbjct: 122 DRMLEEGFHAEITEILQLLPQKRQTMLFSATMNSNISDLIQLSLQKPARIMIDPPKAAAS 181
Query: 214 TLTEEVVRIRRMREVNQEAVLLSLCSKTFT---SKVIIFSGTKQAAHRLKILFGLAALKA 270
L +E VRIR+ R+ + A+L + +K + S++I+F TK AHRL+I+ GL LK
Sbjct: 182 GLLQEFVRIRK-RDGLKPALLYDVLAKLXSNNQSRIIVFVATKTLAHRLRIVMGLLGLKV 240
Query: 271 AELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHR 330
ELHG L+Q QRL+++ F+K V LI TD+A+RGLDI ++ VINY P++ Y+HR
Sbjct: 241 XELHGALSQEQRLDSITAFKKLTVPILICTDLASRGLDIPKIEVVINYDMPKNHEIYLHR 300
Query: 331 VGRTARAGREGYAVTFVTDNDR------SLLKAIAKRAGSKLKSRIVAEQSITKWSKIIE 384
VGRTARAGR G +++FV ++ R +K I K SR V ++K + IIE
Sbjct: 301 VGRTARAGRXGKSISFVGESKRERHIVKESIKQIESSHTGKAVSRKVDWAEVSKINSIIE 360
Query: 385 QMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRT 430
+D V +L EE+ E+ L +AEME K ENM+ +K+EI ARPKR
Sbjct: 361 TKKDDVDDVLSEEKAEKELLQAEMELKKGENMLKYKDEIEARPKRN 406
>gi|401412566|ref|XP_003885730.1| putative DEAD/DEAH box RNA helicase [Neospora caninum Liverpool]
gi|325120150|emb|CBZ55704.1| putative DEAD/DEAH box RNA helicase [Neospora caninum Liverpool]
Length = 969
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 217/509 (42%), Positives = 297/509 (58%), Gaps = 73/509 (14%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L LSRPLLRA + L Y+ PT IQAAC+ AL GRD+ +A TGSGKTAAF LPTLERLL
Sbjct: 235 DLPLSRPLLRAIQDLEYAHPTHIQAACLRPALEGRDLLANAQTGSGKTAAFLLPTLERLL 294
Query: 62 YRP-----KRIP--------AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 108
+ P K P + L+L PTRELA+Q M++ ++++T + L GG++
Sbjct: 295 HSPGVRTRKMTPNGPAGGLRGTKALVLLPTRELAMQCVQMLQCLSKYTPVTHALACGGMT 354
Query: 109 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 168
K E ALR PDIVVATPGR++D L NS +V L+ L +++LDEADRLLELGF EI +
Sbjct: 355 LKAHENALRQQPDIVVATPGRILDLLLNSPTVHLELLEIIVLDEADRLLELGFREEILAI 414
Query: 169 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSA-----DPSAKR------------ 211
+R C + RQT+LFSATLT + L L+L +PL +SA D +A R
Sbjct: 415 LRHCHRARQTLLFSATLTPSIASLASLALNRPLHISAEAAVGDSTADREKSGFTVTSLQA 474
Query: 212 --------PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILF 263
STL ++ V ++ R+ ++ LL LC+ +T VI+F TKQ AH+ +LF
Sbjct: 475 ATAALKQVSSTLEQQFVMLQ--RDEHRAPALLHLCTTAYTKNVIVFFQTKQLAHQTSLLF 532
Query: 264 GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD 323
L+ AELHGNLTQ R+EALE F DFL+A+++A+RGLDI GV+ VIN+ P D
Sbjct: 533 KFMGLQYAELHGNLTQQMRVEALERFHAGEADFLLASELASRGLDIAGVEAVINFNVPAD 592
Query: 324 LTSYVHRVGRTARAGREGYAVTFVTDND------RSLLKAI-----------AKRAGSKL 366
+ Y+H VGRTAR GR G AVT + + LL+A+ K SK
Sbjct: 593 IDRYIHSVGRTARMGRSGVAVTLYHRDGPERLQVKKLLQALRGGLNQSGEKPGKSRNSKG 652
Query: 367 KSRIVAEQSITKWSKI---------IEQMEDQVAAI-------LQEEREERILRKAEMEA 410
K + S ++ +E +E +V ++ L+ E+ ER +R AE+
Sbjct: 653 KGDTAQDGSSAGAPRVFQRRIDADKLEALEKKVKSLQGDISRELKREKLEREVRLAELHL 712
Query: 411 TKAENMIAHKEEIFARPKRTWFVTEKEKK 439
KAEN+ H +EI++RP R WF+T KEK+
Sbjct: 713 QKAENLQTHADEIYSRPMRQWFMTAKEKQ 741
>gi|145481669|ref|XP_001426857.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393934|emb|CAK59459.1| unnamed protein product [Paramecium tetraurelia]
Length = 542
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/439 (42%), Positives = 278/439 (63%), Gaps = 1/439 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L++ L++AC GY PT IQA +PL L G+D+ S+ TGSGKTAAF LP ++R
Sbjct: 95 QLKLNKSLVKACHEQGYKYPTKIQAQIVPLVLAGKDVLASSCTGSGKTAAFLLPLMQRF- 153
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K + LI+ PTRELA+Q M +K+ QF+ LV+G + + QE LR PD
Sbjct: 154 GNTKSQKYSKALIVMPTRELALQCFEMFQKLNQFSHCTAALVIGAVPIQQQEAELRRYPD 213
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++D ++NS S+DL + VL+LDEADRL+E+GF AEI E+++ P+ RQT+L
Sbjct: 214 IIIATPGRIVDIMKNSFSIDLSSIEVLVLDEADRLMEMGFEAEIKEILQQTPRDRQTVLV 273
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SATL V +L L+L KP+++S D L + ++RI E ++EA L++L +
Sbjct: 274 SATLKATVKQLSLLALHKPVKVSVDYVDGLAYGLKQYILRIDSDEEKDREATLIALLQQK 333
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F K IIF TK HRL+IL GL L + ELHGNLTQ QR++A E F++ +L+ATD
Sbjct: 334 FIEKTIIFVRTKHDCHRLQILLGLKNLSSCELHGNLTQQQRIQAYEDFKEGKFQYLLATD 393
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARGLDI V+ VIN+ P + + Y+HRVGRTAR G +G +VT + S K + K
Sbjct: 394 LAARGLDIANVKAVINFEIPYETSRYIHRVGRTARIGNQGVSVTICLKKEVSQFKQMIKE 453
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 421
+ KL +SI + ++ +E ++ I++ E E+ + + E+ A +A+N+I H+
Sbjct: 454 SKQKLFKLNFNIESIEEIKSDLKSLEPKIKKIIKGEVFEKEIHQTEILAQRAQNLIQHRV 513
Query: 422 EIFARPKRTWFVTEKEKKL 440
EI +PK+ W + ++KKL
Sbjct: 514 EIMRKPKKEWIQSAQQKKL 532
>gi|237842773|ref|XP_002370684.1| DEAD/DEAH box RNA helicase, putative [Toxoplasma gondii ME49]
gi|211968348|gb|EEB03544.1| DEAD/DEAH box RNA helicase, putative [Toxoplasma gondii ME49]
Length = 962
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 213/507 (42%), Positives = 297/507 (58%), Gaps = 71/507 (14%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L LSRPLLRA + L Y+ PT IQAAC+ AL GRD+ +A TGSGKTAAF LPTLERLL
Sbjct: 228 DLPLSRPLLRAIQDLEYAHPTHIQAACLRPALEGRDLLANAQTGSGKTAAFLLPTLERLL 287
Query: 62 YRP----KRIPA---------IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 108
+ P +++ A + L+L PTRELA+Q M++ ++++T I L GG++
Sbjct: 288 HSPGVRSRKMTANGPTGGLRGTKALVLLPTRELAMQCVQMLQCLSKYTPITHALACGGMT 347
Query: 109 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 168
K E+ALR PDIVVATPGR++D L NS +V L+ L +++LDEADRLLELGF EI +
Sbjct: 348 LKAHESALRHQPDIVVATPGRILDLLLNSPTVHLELLEIIVLDEADRLLELGFREEILAI 407
Query: 169 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSA-----DPSAKR------------ 211
+R C + RQT+LFSATLT + L L+L +PL +SA D +A R
Sbjct: 408 LRHCHRARQTLLFSATLTPSIASLASLALNRPLHISAEATVTDSTAGREKSGFTVTSLQA 467
Query: 212 --------PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILF 263
STL ++ V ++ RE ++ LL LC+ +T VI+F TK+ AH+ +LF
Sbjct: 468 ATAALKTVSSTLEQQFVMLQ--REEHRAPALLHLCTTAYTKNVIVFFQTKKLAHQTSLLF 525
Query: 264 GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD 323
LK AELHGNLTQ R+EALE F DFL+A+++A+RGLDI GV+ VIN+ P D
Sbjct: 526 KFMGLKYAELHGNLTQQMRVEALERFHAGEADFLLASELASRGLDIAGVEAVINFNVPAD 585
Query: 324 LTSYVHRVGRTARAGREGYAVTFVTDND------RSLLKAI------------------- 358
+ Y+H VGRTAR GR G AVT + + LL A+
Sbjct: 586 IDRYIHSVGRTARMGRSGVAVTIYHRDGTERLQVKKLLHALRSGLNQPGEKAGKGKKGKG 645
Query: 359 ------AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATK 412
+ +G ++ R + + K ++ ++ + L+ E+ ER +R AE+ K
Sbjct: 646 DKAQDGSLASGPRVFQRRIDADKLEMLEKKVKSLQGDIVRELKREKLEREVRLAELHLQK 705
Query: 413 AENMIAHKEEIFARPKRTWFVTEKEKK 439
AEN+ H +EI++RP R WF+T KEK+
Sbjct: 706 AENLQTHADEIYSRPMRQWFMTAKEKQ 732
>gi|221502971|gb|EEE28681.1| DEAD/DEAH box RNA helicase, putative [Toxoplasma gondii VEG]
Length = 959
Score = 369 bits (947), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 216/519 (41%), Positives = 300/519 (57%), Gaps = 71/519 (13%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L LSRPLLRA + L Y+ PT IQAAC+ AL GRD+ +A TGSGKTAAF LPTLERLL
Sbjct: 225 DLPLSRPLLRAIQDLEYAHPTHIQAACLRPALEGRDLLANAQTGSGKTAAFLLPTLERLL 284
Query: 62 YRP----KRIPA---------IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 108
+ P +++ A + L+L PTRELA+Q M++ ++++T I L GG++
Sbjct: 285 HSPGVRSRKMTANGPTGGLRGTKALVLLPTRELAMQCVQMLQCLSKYTPITHALACGGMT 344
Query: 109 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 168
K E+ALR PDIVVATPGR++D L NS +V L+ L +++LDEADRLLELGF EI +
Sbjct: 345 LKAHESALRHQPDIVVATPGRILDLLLNSPTVHLELLEIIVLDEADRLLELGFREEILAI 404
Query: 169 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSA-----DPSAKR------------ 211
+R C + RQT+LFSATLT + L L+L +PL +SA D +A R
Sbjct: 405 LRHCHRARQTLLFSATLTPSIASLASLALNRPLHISAEATVTDSTAGREKSGFTVTSLQA 464
Query: 212 --------PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILF 263
STL ++ V + RE ++ LL LC+ +T VI+F TK+ AH+ +LF
Sbjct: 465 ATAALKTVSSTLEQQFVMLH--REEHRAPALLHLCTTAYTKNVIVFFQTKKLAHQTSLLF 522
Query: 264 GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD 323
LK AELHGNLTQ R+EALE F DFL+A+++A+RGLDI GV+ VIN+ P D
Sbjct: 523 KFMGLKYAELHGNLTQQMRVEALERFHAGEADFLLASELASRGLDIAGVEAVINFNVPAD 582
Query: 324 LTSYVHRVGRTARAGREGYAVTFVTDND------RSLLKAI------------------- 358
+ Y+H VGRTAR GR G AVT + + LL A+
Sbjct: 583 IDRYIHSVGRTARMGRSGVAVTIYHRDGTERLQVKKLLHALRSGLNQPGEKAVKGKKGKG 642
Query: 359 ------AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATK 412
+ +G ++ R + + K ++ ++ + L+ E+ ER +R AE+ K
Sbjct: 643 DKAQDGSLASGPRVFQRRIDADKLEMLEKKVKSLQGDIVRELKREKLEREVRLAELHLQK 702
Query: 413 AENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEK 451
AEN+ H +EI++RP R WF+T KEK+ KA + K
Sbjct: 703 AENLQTHADEIYSRPMRQWFMTAKEKQRLKDESKALVGK 741
>gi|221485654|gb|EEE23935.1| DEAD/DEAH box RNA helicase, putative [Toxoplasma gondii GT1]
Length = 962
Score = 369 bits (947), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 216/519 (41%), Positives = 300/519 (57%), Gaps = 71/519 (13%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L LSRPLLRA + L Y+ PT IQAAC+ AL GRD+ +A TGSGKTAAF LPTLERLL
Sbjct: 228 DLPLSRPLLRAIQDLEYAHPTHIQAACLRPALEGRDLLANAQTGSGKTAAFLLPTLERLL 287
Query: 62 YRP----KRIPA---------IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 108
+ P +++ A + L+L PTRELA+Q M++ ++++T I L GG++
Sbjct: 288 HSPGVRSRKMTANGPTGGLRGTKALVLLPTRELAMQCVQMLQCLSKYTPITHALACGGMT 347
Query: 109 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 168
K E+ALR PDIVVATPGR++D L NS +V L+ L +++LDEADRLLELGF EI +
Sbjct: 348 LKAHESALRHQPDIVVATPGRILDLLLNSPTVHLELLEIIVLDEADRLLELGFREEILAI 407
Query: 169 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSA-----DPSAKR------------ 211
+R C + RQT+LFSATLT + L L+L +PL +SA D +A R
Sbjct: 408 LRHCHRARQTLLFSATLTPSIASLASLALNRPLHISAEATVTDSTAGREKSGFTVTSLQA 467
Query: 212 --------PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILF 263
STL ++ V + RE ++ LL LC+ +T VI+F TK+ AH+ +LF
Sbjct: 468 ATAALKTVSSTLEQQFVMLH--REEHRAPALLHLCTTAYTKNVIVFFQTKKLAHQTSLLF 525
Query: 264 GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD 323
LK AELHGNLTQ R+EALE F DFL+A+++A+RGLDI GV+ VIN+ P D
Sbjct: 526 KFMGLKYAELHGNLTQQMRVEALERFHAGEADFLLASELASRGLDIAGVEAVINFNVPAD 585
Query: 324 LTSYVHRVGRTARAGREGYAVTFVTDND------RSLLKAI------------------- 358
+ Y+H VGRTAR GR G AVT + + LL A+
Sbjct: 586 IDRYIHSVGRTARMGRSGVAVTIYHRDGTERLQVKKLLHALRSGLNQPGEKAVKGKKGKG 645
Query: 359 ------AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATK 412
+ +G ++ R + + K ++ ++ + L+ E+ ER +R AE+ K
Sbjct: 646 DKAQDGSLASGPRVFQRRIDADKLEMLEKKVKSLQGDIVRELKREKLEREVRLAELHLQK 705
Query: 413 AENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEK 451
AEN+ H +EI++RP R WF+T KEK+ KA + K
Sbjct: 706 AENLQTHADEIYSRPMRQWFMTAKEKQRLKDESKALVGK 744
>gi|256079059|ref|XP_002575808.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
gi|353230863|emb|CCD77280.1| putative dead box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 625
Score = 365 bits (938), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 196/445 (44%), Positives = 279/445 (62%), Gaps = 27/445 (6%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+EL+L++PLL++ + KPTPIQ ACIP+AL RDIC A TGSGKT AF LP LERL
Sbjct: 128 IELSLAKPLLKSLTEMSLDKPTPIQCACIPVALLHRDICACARTGSGKTLAFLLPVLERL 187
Query: 61 LYRPKRI--PAIRVLILTPTRELAVQVHSMIEKIAQFTD-IRCCLVVGGLSTKMQETALR 117
+ R L+++PTRELAVQ+ ++ EK+ ++ +R L GGL QE +LR
Sbjct: 188 AKKSTDFNHAVTRALVISPTRELAVQIFNVAEKLVKYCPKLRIQLAAGGLDLHSQEASLR 247
Query: 118 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 177
PD+VVATPGR+IDHL N+ S +L + L+LDEAD+LL+ F+ +I E+++ C +RQ
Sbjct: 248 LNPDLVVATPGRLIDHLSNAPSFNLQHIEYLVLDEADKLLDEYFAEQIGEIIKFCSTKRQ 307
Query: 178 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 237
T+LFSAT+TE V EL LSL P+++ + + L +E VRIR RE ++ A++++L
Sbjct: 308 TLLFSATMTESVKELAILSLRDPVQVFLNQATAVAQCLHQEFVRIRPHREDDRRAIVIAL 367
Query: 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK------ 291
+ F + I+F TK+ H++ I+ GL L ELHGN+TQAQRLEAL+ F
Sbjct: 368 LMRHFRKRTIVFLPTKKDCHKMHIMLGLLGLSCTELHGNMTQAQRLEALKRFSYVGTSDE 427
Query: 292 ------------------QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGR 333
+ VD L+ATD+A+RGLDI VQTVINY P+ + YVHRVGR
Sbjct: 428 CKNKSATDQLTEMNNPDIRPVDILLATDLASRGLDIPNVQTVINYTLPQTMKQYVHRVGR 487
Query: 334 TARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAI 393
TAR G AV+ V ++DR ++K I K+A +K+R++A I + I ++E + I
Sbjct: 488 TARIMNVGRAVSLVGEDDRKVMKEIMKQAPYPVKARVIASDVIATYQSKITRLEPIIGKI 547
Query: 394 LQEEREERILRKAEMEATKAENMIA 418
L E EER LR A+ + +KAE +++
Sbjct: 548 LAAEAEERELRAAQSQLSKAEELVS 572
>gi|10732632|gb|AAG22482.1|AF193054_1 unknown [Homo sapiens]
Length = 312
Score = 365 bits (936), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 171/309 (55%), Positives = 230/309 (74%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+Y
Sbjct: 1 MNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIY 60
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR+ PDI
Sbjct: 61 KPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDI 120
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLFS
Sbjct: 121 LIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFS 180
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T++V +L +SL P+R+ + + S L +E +RIR RE ++EA++ +L ++TF
Sbjct: 181 ATMTDEVKDLASVSLKNPVRIFVNKQHRCGSLLRQEFIRIRPNREGDREAIVAALLTRTF 240
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATDV
Sbjct: 241 TDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDV 300
Query: 303 AARGLDIIG 311
AARGLDI G
Sbjct: 301 AARGLDIEG 309
>gi|402882297|ref|XP_003904684.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Papio anubis]
Length = 711
Score = 363 bits (932), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 189/439 (43%), Positives = 270/439 (61%), Gaps = 54/439 (12%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC + GK L
Sbjct: 190 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACCV---GKPMCLGL------- 239
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
C L V K QE ALR+ PD
Sbjct: 240 --------------------------------------CGLDV-----KSQEAALRAAPD 256
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 257 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 316
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 317 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT 376
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 377 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 436
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK I K
Sbjct: 437 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKA 496
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++ K
Sbjct: 497 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGK 556
Query: 421 EEIFARPKRTWFVTEKEKK 439
E + P+R WF T++E+K
Sbjct: 557 EAVVQEPERNWFQTKEERK 575
>gi|294944705|ref|XP_002784389.1| ATP-dependent RNA helicase DRS1, putative [Perkinsus marinus ATCC
50983]
gi|239897423|gb|EER16185.1| ATP-dependent RNA helicase DRS1, putative [Perkinsus marinus ATCC
50983]
Length = 720
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 196/460 (42%), Positives = 280/460 (60%), Gaps = 32/460 (6%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL- 61
L LSRP+LR ALG+++PTP+Q IP+AL +DI A TGSGKT F LP +ERL
Sbjct: 138 LQLSRPVLRGLNALGFAEPTPVQRDVIPVALRSQDILAMAETGSGKTGGFLLPIVERLCQ 197
Query: 62 ---YRPKRI-----------PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGL 107
R +R A + L+L PTRELAVQ + M+ +F + CLVVGG
Sbjct: 198 ASHVRSRRKDPHTGRITGGRAATKALVLLPTRELAVQCYKMLRDFTKFAPLTSCLVVGGF 257
Query: 108 STKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHE 167
+ Q + +R+ PD+V+ATPGR++D L NS ++ L+ +++LDE DRLLE+GF E
Sbjct: 258 DAQKQASEMRAQPDVVLATPGRVLDLLLNSPNIHLEMCEIVVLDECDRLLEMGFRDECLT 317
Query: 168 LV-RLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR 226
++ + C + RQTM+FSAT+ ++V +L K+ L+KP+ + + + TLT+E +R+
Sbjct: 318 IIQKHCNRSRQTMMFSATMNQEVLKLAKVVLSKPVTIETTKANRVSPTLTQEFIRV--TS 375
Query: 227 EVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAA-LKAAELHGNLTQAQRLEA 285
E +EA LL+ C+K FT + +IF K+ AHR+ +L GL +K AELHGNL+Q QR++A
Sbjct: 376 EQQREATLLAACTKHFTKRCLIFCAQKKTAHRMAVLLGLVGKVKFAELHGNLSQQQRVKA 435
Query: 286 LELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT 345
L F LI TD+AARGLD+ V+TVIN+ P D+T YVHRVGRTARAG G +VT
Sbjct: 436 LADFESGKATHLICTDLAARGLDLPHVETVINFELPPDVTKYVHRVGRTARAGASGTSVT 495
Query: 346 FVTDNDRSLLKAIAKRAGSKLK-------------SRIVAEQSITKWSKIIEQMEDQVAA 392
T + +K IAK+ + +K R V + + + I + ED+V
Sbjct: 496 MYTPGEYKQVKHIAKKCTADVKRKKSSDPNQPKVLERTVDSEDVKDMAVKITESEDKVKQ 555
Query: 393 ILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWF 432
I+QEE ER LR A++ A K +NM H++EI RP++ W
Sbjct: 556 IMQEESVERELRLADVMAKKVDNMKTHRKEIDRRPRQQWI 595
>gi|403223642|dbj|BAM41772.1| DEAD-box family helicase [Theileria orientalis strain Shintoku]
Length = 567
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 192/466 (41%), Positives = 288/466 (61%), Gaps = 32/466 (6%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ +L + LL+A LGY PT IQ IPLAL G+D+ +A TGSGKTA+F +PTL+RL+
Sbjct: 75 DFSLCKSLLKAIYELGYEHPTLIQTKVIPLALEGKDLLVTAETGSGKTASFVIPTLQRLV 134
Query: 62 ------------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLST 109
Y +VL++ PTRELA Q + + + ++++ L+ GG+
Sbjct: 135 ASGFIKQRTKDNYTHGLRHGTKVLVILPTRELAAQCYEVYKSLSKYLTTNAALLTGGIPI 194
Query: 110 KMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIH--- 166
K QE L+ +PD ++ TPGR +D L NS S++++++ V+I+DEAD+LLELGF E+
Sbjct: 195 KEQENKLKQIPDTIICTPGRALDMLLNSSSINVENIEVVIMDEADKLLELGFRDEVRPKR 254
Query: 167 --ELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR 224
++ C + RQTMLFSATLTE+ EL+ LS+T P+ + D K TL E++ I +
Sbjct: 255 KSKMKNFCNRNRQTMLFSATLTEETKELVNLSMTNPVYVKVDEPTKVSKTLEFEMLMIPK 314
Query: 225 MREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLE 284
E +EA + LC+K K I+F TK+AAHR+ ++F L LK AELHGNL+Q++R E
Sbjct: 315 --EEYREACAVYLCTKYCKEKTILFFQTKRAAHRMYLIFKLMKLKCAELHGNLSQSKRFE 372
Query: 285 ALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAV 344
++E F+K VD+L+A+++A+RGLDI G++TVIN P D+T Y+HRVGRTAR G G A+
Sbjct: 373 SVEKFKKSEVDYLLASELASRGLDIPGIKTVINVDLPTDITRYIHRVGRTARMGSSGKAI 432
Query: 345 TFVTDNDRSLLKAIAKRA---GSKLKS--RIVAEQSITKWSKIIEQMEDQVAAILQEERE 399
T D RS +K K+ GSK ++ R VA + K+ I ++E+++ IL E+
Sbjct: 433 TLYVDEQRSQVKLFLKKTSTLGSKYENNKRKVASGILNKYKNSIAELEEKIKEILLNEKI 492
Query: 400 ERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKAD 445
E+ ++K + + +N+ + E KR WF + KEKK A K +
Sbjct: 493 EKDIKKID---STMKNVEGKETE-----KRKWFRSIKEKKSASKQE 530
>gi|209882552|ref|XP_002142712.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
gi|209558318|gb|EEA08363.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
Length = 555
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 215/525 (40%), Positives = 301/525 (57%), Gaps = 48/525 (9%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LSRP+L+A L + PTPIQ IPLAL GRDI A TGSGKTAAF LPT+ERLL
Sbjct: 6 LELSRPILKALNDLNFVNPTPIQKEVIPLALAGRDILAEAETGSGKTAAFLLPTIERLLK 65
Query: 63 RP-----KRIP--------AIRVLILTPTRELAVQVHSMIEKIAQFTDIRC-CLVVGGLS 108
P K P A +VLIL P+RELA+Q ++E + ++ I C+V GG+S
Sbjct: 66 FPGIRARKMSPLGPTGGLNATKVLILLPSRELAMQCFDVLESLIKYCLIITRCIVTGGMS 125
Query: 109 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 168
E LRS PDIV+ATPGR++D L N+M V L+ L ++ILDEADRLL++GF E E+
Sbjct: 126 QSQHEVTLRSQPDIVIATPGRILDMLINTMGVHLELLEIVILDEADRLLDMGFRRECLEI 185
Query: 169 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLS-----------------ADPSA-K 210
+R + RQTMLFSATL+ V +L L+L P R+S +D S
Sbjct: 186 LRYVSQCRQTMLFSATLSRGVTDLALLTLRNPCRISTIGLGRNAILSNTEGITSDVSTIG 245
Query: 211 RPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKA 270
+TL +E V + E ++E L + SK +T +VI+F TK+ A R+ IL + A
Sbjct: 246 LSTTLNQEFVELNE--EKDREGALFHILSKIYTERVIVFFQTKKEARRISILCNILGFSA 303
Query: 271 AELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHR 330
ELHG LTQ +R E L F K L+A+++AARGLDI G+ VIN+ P + + Y+HR
Sbjct: 304 VELHGYLTQEKRNENLARFTKGESKILLASELAARGLDIKGITAVINFTLPLEASRYIHR 363
Query: 331 VGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSK-------------LKSRIVAEQSIT 377
VGRTAR G G ++T + ++RS LK++ K+ K +K + +I+
Sbjct: 364 VGRTARIGENGNSITLYSQSERSRLKSLMKQVLRKSGSSSSTTKLCNLMKKLKFSSNNIS 423
Query: 378 KWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKE 437
WS+ I + E +V ++ E+ LR AE+EA KAEN++ HKE I RP++ WF + +
Sbjct: 424 YWSERILESEPKVKQQIRANIAEKELRLAELEANKAENILIHKENISGRPRKKWFQSTLQ 483
Query: 438 KKLAVKADKAS-IEKGKGSGNEVTSAQQAEDLKIKEKRKREREKN 481
K++A K IEK NE+ L +++K +E+N
Sbjct: 484 KEIAKDLSKRELIEKAGFDLNELNDITCKGLLLNSDRKKNPKEQN 528
>gi|323454376|gb|EGB10246.1| hypothetical protein AURANDRAFT_23571, partial [Aureococcus
anophagefferens]
Length = 545
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 213/492 (43%), Positives = 275/492 (55%), Gaps = 56/492 (11%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L R LLRA ALG+S+PT IQ +PLAL GRD+C SA TGSGKTAAF LP LER++
Sbjct: 55 ELGLCRCLLRAVAALGFSRPTAIQERVVPLALAGRDVCASAATGSGKTAAFGLPLLERVV 114
Query: 62 YRPKRI---PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGL-STKMQETALR 117
R K P IR +IL PTRELA Q M+ + QF+ LVVGG K+QE ALR
Sbjct: 115 -RAKAAHGKPTIRGVILLPTRELAAQCEEMVRGLGQFSGADVALVVGGAKDVKVQELALR 173
Query: 118 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK--- 174
PD+VVATPGR++DHL N V LDD+ +LDEADRLLELGF E+ +L+ P
Sbjct: 174 RKPDVVVATPGRLLDHLTNGRGVHLDDVECCVLDEADRLLELGFEDELRQLLGALPGGSE 233
Query: 175 ---------RRQTMLFSATLTEDVDELIKLSLTKPLRL---SADPSAKRPSTLTEEVVRI 222
RQTMLFSAT V+ L LSL +P+R+ S + + LT++ VR+
Sbjct: 234 RGKGGRGSGTRQTMLFSATFGAKVESLAALSLVRPVRVRVASGHGAGGVAAKLTQDFVRL 293
Query: 223 R----RMREVNQEAVLLSLCSKTF--TSKVIIFSGTKQAAHRLKILF----------GLA 266
+ R + +EA LL+L ++T S+ ++F TK A R+ L G A
Sbjct: 294 KAAEGRAEDAEREATLLALLTRTVDPASQAVVFFDTKAATRRVGALLEALRARGGLSGHA 353
Query: 267 ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTS 326
A ELHG L QAQR L F + L+ TDVAARGLD+ GV V+N+ PR + +
Sbjct: 354 LPPATELHGGLRQAQRDANLARFERGDAGILLCTDVAARGLDLAGVGAVVNFEMPRTVAT 413
Query: 327 YVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR--------------------AGSKL 366
YVHRVGRTARAGR G+AVT V R LK + + L
Sbjct: 414 YVHRVGRTARAGRSGHAVTLVGPQRRQALKEFLRSRTAQLDAARDAGDAGAAAELESAGL 473
Query: 367 KSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFAR 426
+SR V + +W + E VA +L +R L +A +A +AEN++ H +I AR
Sbjct: 474 RSRAVPPAVLAEWRDAVGAAEADVAGLLALAAADRELSRAAEDAQRAENLLVHGADIAAR 533
Query: 427 PKRTWFVTEKEK 438
PKR WF + K+K
Sbjct: 534 PKREWFQSSKQK 545
>gi|313231894|emb|CBY09006.1| unnamed protein product [Oikopleura dioica]
Length = 1234
Score = 351 bits (900), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 218/558 (39%), Positives = 324/558 (58%), Gaps = 36/558 (6%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ R LL+A +G++ PTPIQ A IP+A+TGRDIC A TGSGKT AF LP L+R
Sbjct: 107 DYGFERKLLKALANVGWTTPTPIQKASIPVAVTGRDICACATTGSGKTGAFVLPILQRFA 166
Query: 62 YR-PKRIPA-IRVLILTPTRELAVQVHSMIEK-IAQFTDIRCCLVVGGLSTKMQETALRS 118
R P ++ + RVL+L PTREL VQV ++ K +A+ ++ GGL Q LR
Sbjct: 167 LRDPSKVESCTRVLVLLPTRELCVQVFAVFRKLVAELENVTVACAAGGLDLVQQTQVLRR 226
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
PDI+VATPGR+IDHL N+ + L ++ +L+LDEADR+L+ F++++ E++ K RQT
Sbjct: 227 DPDILVATPGRLIDHLHNTPNFSLQEIEILVLDEADRMLDEFFASQMKEILSQTCKTRQT 286
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
MLFSAT+T+ V EL ++LTKP+++ + L ++ VRIR RE ++EA++ +L
Sbjct: 287 MLFSATMTDTVQELTDVALTKPMKIFISSNTDVADGLEQQFVRIRPGREGDREAMVAAL- 345
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+K+ +I++ T++ AHR+ IL GL LK ELHG+++Q RLEAL F+ ++
Sbjct: 346 NKSLRMLLILYQ-TRKMAHRMHILLGLLGLKVVELHGSMSQTARLEALANFKNGTAHIMV 404
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
TDVAARGLDI V+TVIN P + SYVHRVGRTARAG++G +++ V +++ +LK I
Sbjct: 405 CTDVAARGLDIPSVRTVINMTLPNNYKSYVHRVGRTARAGKQGRSISLVGESEWKILKMI 464
Query: 359 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 418
K + + K+R +A + +T + + + E +V I+ E EE L E + A+N +
Sbjct: 465 IKASKTSCKTRTLATEVVTNFKTKLNEYESKVKKIIDMENEEAALAAIENQVNAAKNKVI 524
Query: 419 HKEEIFARPKRTWFVTEKEKKLAVKAD---KASIEKGKGSGNEVTSAQQAEDLKIKEKRK 475
E KR WF T+ E++L KAD K I+ G Q+A+ + +E+ K
Sbjct: 525 RPNE-----KRGWFQTKYERELE-KADRMLKNKIDTNTPEGRAQLEMQKADAFRHREQ-K 577
Query: 476 REREKNLPRKERRKLEAAREMLEDEDQVDKLQGSGKDKKEKAGISMVDLAYRRAKAVKAK 535
RE++ N R GS + +KEKA LA+ KAVK
Sbjct: 578 REKKGNRVRA---------------------LGSEQSQKEKAEAREKKLAHVTQKAVKFH 616
Query: 536 QKALDAGKIVKSNGKKSK 553
+ D + K+ G+ K
Sbjct: 617 RYVKDQDRSSKTKGRGQK 634
Score = 344 bits (883), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 195/466 (41%), Positives = 290/466 (62%), Gaps = 12/466 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ R LL+A +G++ PTPIQ A IP+A+TGRDIC A TGSGKT AF LP L+R
Sbjct: 656 DYGFERKLLKALANVGWTTPTPIQKASIPVAVTGRDICACATTGSGKTGAFVLPILQRFA 715
Query: 62 YR-PKRIPA-IRVLILTPTRELAVQVHSMIEK-IAQFTDIRCCLVVGGLSTKMQETALRS 118
R P ++ + RVL+L PTREL VQV ++ K +A+ ++ GGL Q LR
Sbjct: 716 LRDPSKVESCTRVLVLLPTRELCVQVFAVFRKLVAELENVTVACAAGGLDLVQQTQVLRR 775
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
PDI+VATPGR+IDHL N+ + L ++ +L+LDEADR+L+ F++++ E++ K RQT
Sbjct: 776 DPDILVATPGRLIDHLHNTPNFSLQEIEILVLDEADRMLDEFFASQMKEILSQTCKTRQT 835
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
MLFSAT+T+ V EL ++LTKP+++ + L ++ VRIR RE ++EA++ +L
Sbjct: 836 MLFSATMTDTVQELTDVALTKPMKIFISSNTDVADGLEQQFVRIRPGREGDREAMVAAL- 894
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+K+ +I++ T++ AHR+ IL GL LK ELHG+++Q RLEAL F+ ++
Sbjct: 895 NKSLRMLLILYQ-TRKMAHRMHILLGLLGLKVVELHGSMSQTARLEALANFKNGTAHIMV 953
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
TDVAARGLDI V+TVIN P + SYVHRVGRTARAG++G +++ V +++ +LK I
Sbjct: 954 CTDVAARGLDIPSVRTVINMTLPNNYKSYVHRVGRTARAGKQGRSISLVGESEWKILKMI 1013
Query: 359 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 418
K + + K+R +A + +T + + + E +V I+ E EE L E + A+N +
Sbjct: 1014 IKASKTSCKTRTLATEVVTNFKTKLNEYESKVKKIIDMENEEAALAAIENQVNAAKNKVI 1073
Query: 419 HKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQ 464
E KR WF T+ E++L KAD+ ++ G N T +Q
Sbjct: 1074 RPNE-----KRGWFQTKYERELE-KADRM-LDAHSGIRNRNTRGKQ 1112
>gi|156379137|ref|XP_001631315.1| predicted protein [Nematostella vectensis]
gi|156218353|gb|EDO39252.1| predicted protein [Nematostella vectensis]
Length = 298
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 161/295 (54%), Positives = 221/295 (74%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+NLSRPLL+A LG+ PTPIQA+ IP+AL G+D+C A TG+GKTAAF LP LERLLY
Sbjct: 1 MNLSRPLLKAVNELGFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLY 60
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RP + PAIRVL++TPTRELA+Q+HS+ ++++T+I+ CL GGL K QE ALR PDI
Sbjct: 61 RPTQSPAIRVLVITPTRELAIQIHSVTNNLSKYTNIQVCLAAGGLDLKSQEAALRKNPDI 120
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V+ATPGR++DHL N+MS L + +L+LDEADR+L+ F +++E+++L P+ RQTMLFS
Sbjct: 121 VIATPGRLVDHLHNTMSFGLQSIEILVLDEADRMLDEHFRDQMNEIIKLSPRGRQTMLFS 180
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T++V+EL+ LSL +P+RL D + L +E +RIR RE ++ A++ +LCS+TF
Sbjct: 181 ATMTDEVEELVTLSLNQPVRLFVDSNTDVAYNLRQEFIRIRPNREEDRLAIVAALCSRTF 240
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
+ ++F TK AH+L+I+ GL L A ELHGNLTQ QRLEAL+ F+ VD L
Sbjct: 241 SDHCLVFLQTKWMAHKLRIVLGLMGLNADELHGNLTQLQRLEALQKFKNGEVDIL 295
>gi|145493178|ref|XP_001432585.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399698|emb|CAK65188.1| unnamed protein product [Paramecium tetraurelia]
Length = 564
Score = 344 bits (882), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/413 (40%), Positives = 260/413 (62%), Gaps = 1/413 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L++ L++AC GY+ PT +QA IP+ + G+D+ S+ TGSGKTAAF LP ++R
Sbjct: 120 QLKLNKALVKACHDQGYTHPTNVQAKIIPIIMNGKDVLASSCTGSGKTAAFLLPIMQRF- 178
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K + + LI+ PTRELA+Q M EK+ ++ + LV+G + + QET LR PD
Sbjct: 179 GNLKNLQYSKALIILPTRELALQCFEMFEKLNKYANCTAALVIGAVPIQQQETELRKYPD 238
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR +D L NS S+++ ++ +L+ DEADRL+E+GF EI ++++ K RQT+L
Sbjct: 239 IIIATPGRTVDLLTNSSSLEIQNIEILVFDEADRLMEMGFEKEIRQILQATSKDRQTVLI 298
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SATL V +L L+L P++++ D L + ++RIR ++ ++EA L++L
Sbjct: 299 SATLNATVKQLSLLALNNPIKVNVDFVGGLAYGLKQYLLRIRSNQDSDREATLITLLKTK 358
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F K IIF TK HRL I+ G + + ELHGNL+Q QR++A E F++ FL+ATD
Sbjct: 359 FKEKTIIFVKTKHDCHRLAIVLGFLDMSSCELHGNLSQQQRIQAYEDFKEGKFQFLLATD 418
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARGLD+ V+ VINY P ++T Y+HRVGRTAR G +G +VT +N+ K + ++
Sbjct: 419 LAARGLDLTDVKAVINYEIPYEVTRYIHRVGRTARIGAQGISVTICLENEVVKFKKMIRQ 478
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAE 414
+ +L I + + + I+Q+E Q+ +++EE E +RK EM K E
Sbjct: 479 SKQQLFKMIADTNKVRQMRRQIQQLEPQIRKVIKEEVAEMEVRKTEMMTQKGE 531
>gi|156089185|ref|XP_001611999.1| DEAD/DEAH box helicase domain containing protein [Babesia bovis]
gi|154799253|gb|EDO08431.1| DEAD/DEAH box helicase domain containing protein [Babesia bovis]
Length = 649
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 189/455 (41%), Positives = 281/455 (61%), Gaps = 28/455 (6%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L LSR L++A +GY P+ IQ+ IP+AL G+D+ +A TGSGK+AAF +PTL+RL+
Sbjct: 129 DLGLSRSLIKAVFDMGYKAPSIIQSKVIPVALEGKDLLATAETGSGKSAAFLIPTLQRLI 188
Query: 62 ----YRPKRIPAIR---------VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 108
+ K + R LIL PTRELA Q + + + Q L+ GG+
Sbjct: 189 TAGVIKQKDVDLTRGGNQRVGTKALILLPTRELAAQCYDVFLALTQNLTQNGVLITGGVP 248
Query: 109 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 168
K QE LR MP IV ATPG+++D + NS + +D + +++LDEADRLL+LGF E+ +
Sbjct: 249 VKEQEAKLRRMPYIVFATPGKVLDIMLNSNCIHMDAIEIVVLDEADRLLDLGFKDELAHI 308
Query: 169 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREV 228
++LC K RQTMLFSATLTE EL+ ++L P+ + A P TL E ++++ +
Sbjct: 309 LQLCNKERQTMLFSATLTEATKELVPVALVNPIYIKATPKITVAKTLKCENIQLKS--DD 366
Query: 229 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALEL 288
+EA L LCS+ +T K I+F TK+AAHR ++F LA LK+ ELHG+L QA+R E +E
Sbjct: 367 LREAAALYLCSQRYTKKTILFFQTKRAAHRNALVFQLAGLKSGELHGDLAQAKRFEQIEK 426
Query: 289 FRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 348
F+ VDFL+A+++A+RGLDI G+ VIN P D ++HRVGRTAR G EG A+TF T
Sbjct: 427 FKNGEVDFLMASELASRGLDIPGISAVINVHLPFDNVRFLHRVGRTARMGEEGTAITFYT 486
Query: 349 DNDR----SLLKAIAKRAGSKLKSRI-VAEQSITKWSKIIEQMEDQVAAILQEEREERIL 403
+ +R S++K+I + + K +I ++ ++ + IE+ME ++A +L E+ E+ L
Sbjct: 487 EKERSAIKSMMKSITDKGSNIDKQKIKLSGAALKNYKSKIEEMEPKIAELLAAEKVEKEL 546
Query: 404 RKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEK 438
R + EN I + R +R WF ++K+K
Sbjct: 547 R-------QCENAIKYGSSTEKR-ERIWFRSKKQK 573
>gi|84997373|ref|XP_953408.1| DEAD-box family helicase [Theileria annulata strain Ankara]
gi|65304404|emb|CAI76783.1| DEAD-box family helicase, putative [Theileria annulata]
Length = 570
Score = 338 bits (868), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 185/463 (39%), Positives = 285/463 (61%), Gaps = 32/463 (6%)
Query: 2 ELNLSRPLLR---ACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 58
+ L R ++R A +GY PT IQ+ IPLAL G+D+ I GSGKTA+F +PTL+
Sbjct: 79 DFGLCRSIMRVGIAISEMGYQNPTIIQSKVIPLALEGKDLLIMMIQGSGKTASFLIPTLQ 138
Query: 59 RL--------LYRPKRIPAIRV----LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGG 106
RL L + K+ R L++ PTRELA Q + + ++++ + L+ GG
Sbjct: 139 RLVVSGVLKQLTKEKQAYNTRFGTKALVILPTRELAAQCFQVFKSLSKYLSSKAILLTGG 198
Query: 107 LSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIH 166
+ K QE LR P+ ++ TPGR +D L NS S++++++ V+I+DEAD+LLELGF E
Sbjct: 199 IPIKEQENRLRQFPETIICTPGRALDMLINSSSINVENIEVVIMDEADKLLELGFRDECL 258
Query: 167 ELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR 226
++++ C + RQTMLFSATLTE+ EL+ LSL P+ + D K TL E++ I +
Sbjct: 259 QVLKYCNRNRQTMLFSATLTEETKELVSLSLVNPVYVKVDDPTKVSRTLEFEMMMIPK-- 316
Query: 227 EVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEAL 286
E +EA L LC+K K I+F TK++AHR+ ++F L +K ELHGNL+Q++R E++
Sbjct: 317 EEYREACALYLCTKYSKDKTILFFQTKRSAHRMFLIFNLLNMKCGELHGNLSQSKRFESV 376
Query: 287 ELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 346
E F+ +D+L+A+++A+RGLDI GV+TVIN P D+T Y+HRVGRTAR G G A+T
Sbjct: 377 ERFKNGEIDYLLASELASRGLDIPGVKTVINVDLPTDITRYIHRVGRTARMGSHGKAITL 436
Query: 347 VTDNDRSLLKAIAKRAG------SKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREE 400
D RS +K K+ SK K ++ + ++ K+ I+++E+++ +L EE E
Sbjct: 437 YVDEQRSQVKLFLKKTSDIGATLSKNKKKVTS-ATLNKYKTKIDELEEKIKELLLEENIE 495
Query: 401 RILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVK 443
+ ++ +AT + H ++ R KR WF ++K+KK+A K
Sbjct: 496 KDIKMC--DAT----LKTHGDQ--DREKRKWFRSKKDKKMASK 530
>gi|429329858|gb|AFZ81617.1| DEAD box ATP-dependent RNA helicase family member protein [Babesia
equi]
Length = 562
Score = 337 bits (864), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 185/466 (39%), Positives = 282/466 (60%), Gaps = 31/466 (6%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ + R +L A L +++PT IQ+ IP+AL G+DI +A TGSGKTAAF +P L+RL+
Sbjct: 74 DFRICRSILLAISDLEFTRPTIIQSRVIPIALEGKDILATAETGSGKTAAFIIPMLQRLV 133
Query: 62 -------------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 108
+R + L+L PTRELA Q + +++ + +F +I L+ GG+
Sbjct: 134 LSNVLTPKNGKFGFRNSTKDVTKALVLLPTRELAAQCYDVLKALTRFLNINDILLTGGIP 193
Query: 109 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 168
K QET L +P+++++TPGR +D L NS + LD + ++ILDEADRLLE+GF E +
Sbjct: 194 IKEQETKLSRIPNVIISTPGRALDILLNSGRIHLDSVEIVILDEADRLLEMGFRDECVNI 253
Query: 169 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREV 228
++ C K RQTMLFSATLTE+ +L+ LSL P+ + + S K TL E + I +
Sbjct: 254 LKFCNKNRQTMLFSATLTEETKDLVNLSLVNPIYIKMEESTKVSKTLNFEAIMIP--SDE 311
Query: 229 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALEL 288
+EA +L LC SK I+F TK++AHR+ ++F L + ELHG+L+Q +R E+++
Sbjct: 312 LREACVLYLCETQCKSKCILFFQTKKSAHRMALIFKLLNMSCGELHGDLSQLKRFESVQK 371
Query: 289 FRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 348
FR VD+L+A+++AARGLDI G+ TVIN P D+ Y+HRVGRTAR G G A++
Sbjct: 372 FRNGEVDYLLASELAARGLDIPGIDTVINVHLPTDVVRYIHRVGRTARMGSHGKAISVYI 431
Query: 349 DNDRSLLKAIAKRAGSKLKS-----RIVAEQSITKWSKIIEQMEDQVAAILQEEREERIL 403
+ +++ +K + K+ + K+ R V + K+S+ IE EDQ+ IL ER E+ +
Sbjct: 432 EEEKAKMKVLLKKTSNIDKNLGKYKRRVPLGVLKKYSEKIEAFEDQINEILINERIEKEI 491
Query: 404 RKAE--MEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKA 447
R + +++ K +N A KR WF + K+KK+A K + A
Sbjct: 492 RLCDNSLKSAKDDN---------ATGKRQWFRSLKDKKIASKIEFA 528
>gi|123504635|ref|XP_001328793.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121911741|gb|EAY16570.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 515
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 171/393 (43%), Positives = 251/393 (63%), Gaps = 6/393 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL LS ++RA + + PTP+Q IP+AL GRD+C SA+TGSGKTAAF +PT+ERLL
Sbjct: 20 ELGLSHSIIRALHKMNFEIPTPVQNKTIPIALQGRDVCASAVTGSGKTAAFLIPTVERLL 79
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLST-KMQETALRSMP 120
R +IL+PTRELA Q +S++ +I QFT + L+ GG S K +E L P
Sbjct: 80 RSKSTEAQTRAVILSPTRELAAQTYSVLSQIIQFTPLTALLLTGGSSNVKEEEERLLEYP 139
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D +V TPGR+IDH++N L+++ VL+LDE+DRLL+ GF ++I E+ + P+ Q++L
Sbjct: 140 DFLVCTPGRIIDHIKNCEGFTLENVLVLVLDESDRLLQEGFYSQIEEVHKSLPETTQSIL 199
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
+AT+ V L ++SL KP+R+ D K LT+E +R + ++A L++ CS+
Sbjct: 200 VTATMNSSVSRLAEMSLKKPVRIDLDDVFKVAKGLTQEFIRCTKE---TRDATLVACCSR 256
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
T K +IF TK+ H L +LF + AEL G++TQ +R EA LF +FLIAT
Sbjct: 257 LCTKKTLIFGNTKKIVHNLYLLFKALGMPVAELQGDMTQLKRYEAHSLFAGGQAEFLIAT 316
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI G++ VINY PR LT YVHRVGRTAR EG + +T++DR ++K+I +
Sbjct: 317 DVAARGLDIKGIENVINYNMPRSLTFYVHRVGRTARINTEGRTIALITEDDREMMKSIIE 376
Query: 361 RAG--SKLKSRIVAEQSITKWSKIIEQMEDQVA 391
++ + + R + + I K I++++++VA
Sbjct: 377 KSAESNPVSKRTIPDNVIEATQKKIDEVQEKVA 409
>gi|441639369|ref|XP_004090206.1| PREDICTED: probable ATP-dependent RNA helicase DDX27, partial
[Nomascus leucogenys]
Length = 786
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 181/439 (41%), Positives = 263/439 (59%), Gaps = 59/439 (13%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+G + + E L
Sbjct: 270 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTG---GLDVKSQEAAL 326
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
A +LI TP R
Sbjct: 327 RA-----APDILIATPGR------------------------------------------ 339
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 340 --------LIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 391
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 392 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT 451
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 452 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 511
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK I K
Sbjct: 512 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKA 571
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 420
A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++ K
Sbjct: 572 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGK 631
Query: 421 EEIFARPKRTWFVTEKEKK 439
E + P+R+WF T++E+K
Sbjct: 632 EAVVQEPERSWFQTKEERK 650
>gi|397630447|gb|EJK69772.1| hypothetical protein THAOC_08936 [Thalassiosira oceanica]
Length = 544
Score = 335 bits (858), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 216/550 (39%), Positives = 304/550 (55%), Gaps = 56/550 (10%)
Query: 97 DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 156
D C V L Q LR+ PD+VVATPGR++DH+ NS VDLDDL L+LDEADRL
Sbjct: 7 DRECMSHVSLLRCTYQAAELRTRPDVVVATPGRILDHVTNSQGVDLDDLEFLVLDEADRL 66
Query: 157 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPST-- 214
L+LGF E+HE+ + CP RQT+LFSATL VDELIKL L +P+R+SA K
Sbjct: 67 LDLGFQDEVHEIFKACPSERQTLLFSATLGTKVDELIKLGLKRPVRISATDKNKGGDAGP 126
Query: 215 ----------LTEEVVRIRRMRE-VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILF 263
L +E VRIR E VN+E +LL+L ++TFTSK + F TK AAHRL I+
Sbjct: 127 GGAGVEVAPRLEQEFVRIRSGNEGVNREGMLLALLTRTFTSKTMCFFDTKVAAHRLMIIC 186
Query: 264 GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD 323
GL +K AELHGNLTQ QRLEALE FR+ VD L+ TD+AARGLDI V+ V+N+ P
Sbjct: 187 GLCGIKCAELHGNLTQTQRLEALEAFREGSVDVLLCTDLAARGLDITCVEAVVNFEMPSQ 246
Query: 324 LTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSK-----------LKSRIVA 372
+ +YVHR+GRTARAGR G A T + + R L+K + K A K ++SR +
Sbjct: 247 VATYVHRIGRTARAGRGGKACTLIGEGRRYLMKEVMKDAEEKARKQKEGTAGVIRSRTIP 306
Query: 373 EQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWF 432
++ + I +ED + +L E R+ R EME +A+N+I H +EI +RP++ WF
Sbjct: 307 AAVVSHFVAKINSLEDNIKEVLDAEAVARLDRITEMEMMRAQNIIEHSDEIKSRPQKEWF 366
Query: 433 VTEKEKKLAVKADKAS----IEKGKGSGNEVTSAQ-----QAEDL--KIKEKRKREREKN 481
T K+ K+++K A +E+ G+G S + +A ++ ++ E+ +RE E
Sbjct: 367 ATSKQ-KISIKEKTAERKRRLEEQTGTGTHRMSRKKRRLNEAREMAHEMMEQEEREAETG 425
Query: 482 LPRK------ERRKLEAAREMLEDEDQVDKLQGSGKDKKEKAGISMVDLAYRRAKAVKAK 535
P K ++R A + +D+ D S D+ + ++ +R K V +
Sbjct: 426 KPSKRVISATQQRSSAKAMKRKQDQQMRDSESRSVFDEDLRR-----EMKQKRRKKVGSS 480
Query: 536 QKALDAGKIVK---SNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHS 592
+ D G + + ++ K + K D + KR G KK H
Sbjct: 481 DASGDQGLFSEERVAYARRPKKDESVEDGPVKSSYAFREYDPT----KRMG--KKKAHHG 534
Query: 593 FKSKSRYKRR 602
FKS+S+YKRR
Sbjct: 535 FKSRSKYKRR 544
>gi|67618387|ref|XP_667590.1| DEAD/DEAH box RNA helicase [Cryptosporidium hominis TU502]
gi|54658742|gb|EAL37362.1| DEAD/DEAH box RNA helicase [Cryptosporidium hominis]
Length = 543
Score = 334 bits (856), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 194/476 (40%), Positives = 281/476 (59%), Gaps = 52/476 (10%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LSRPLL+A L + + T IQ IPLAL+GRDI A TGSGKTAAF LP LERLL
Sbjct: 5 LELSRPLLKALSDLNFVEATLIQKEVIPLALSGRDIMAEAETGSGKTAAFLLPALERLLR 64
Query: 63 RP----KRIPAI---------RVLILTPTRELAVQVHSMIEKIAQFTDIRC-CLVVGGLS 108
P R+ ++ +VL+L P+RELA+Q ++E + ++ + +V GG++
Sbjct: 65 SPYVRNSRVSSLGRVGGAVGTKVLVLLPSRELAMQCFGVLESLTKYCPVITRAVVTGGMN 124
Query: 109 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 168
+ QE L+ P IV+ATPGR++D L N++S+ L+ L ++ILDEADRLL++GF E E+
Sbjct: 125 IQQQERILKCQPHIVIATPGRILDMLLNTLSIQLELLEIIILDEADRLLDMGFRQECLEI 184
Query: 169 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLS----------ADPSAKR------- 211
++ + RQTMLFSATL+ V +L L+L P ++S A S +
Sbjct: 185 LKYSSRTRQTMLFSATLSRSVTDLALLALNNPCKVSTVGLKSGIKSAGSSGESELLSITG 244
Query: 212 -PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKA 270
STL +E + I + E +E L + +K FT +VI+F TK+ AHR IL + L +
Sbjct: 245 LSSTLEQEFLEITKEEE--REGALFYILNKIFTKRVIVFFQTKKEAHRCAILGNIFGLSS 302
Query: 271 AELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHR 330
ELHG L Q +RLE F+ VD L A+++AARGLD+ V VIN+ P + + Y+HR
Sbjct: 303 TELHGFLPQEKRLENFSKFKSGQVDILFASELAARGLDVQDVSAVINFTIPLEASRYIHR 362
Query: 331 VGRTARAGREGYAVTFVTDNDRSLLKAIAK---RAGSK---------------LKSRIVA 372
VGRTAR G +G +T T ++RS LKA+ K RAG+K +K R +A
Sbjct: 363 VGRTARIGSKGNCITIYTQSERSQLKALMKQVLRAGNKSSVAGRDKKENVSSIMKKRTLA 422
Query: 373 EQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPK 428
+I +W + I E QV ++ + E+ LR AEM+ KA+N++ HK++I +RP+
Sbjct: 423 TNNINQWVEKISNSEKQVKDAIKADITEKELRIAEMQVNKAQNILLHKKDIESRPR 478
>gi|66475988|ref|XP_627810.1| Drs1p, eIF4a-1-family RNA SFII helicase [Cryptosporidium parvum
Iowa II]
gi|46229323|gb|EAK90172.1| Drs1p, eIF4a-1-family RNA SFII helicase [Cryptosporidium parvum
Iowa II]
Length = 573
Score = 331 bits (849), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 280/476 (58%), Gaps = 52/476 (10%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LSRPLL+A L + + T IQ IPLAL+GRDI A TGSGKTAAF LP LERLL
Sbjct: 35 LELSRPLLKALSDLNFVEATLIQKEVIPLALSGRDIMAEAETGSGKTAAFLLPALERLLR 94
Query: 63 RP----KRIPAI---------RVLILTPTRELAVQVHSMIEKIAQFTDIRC-CLVVGGLS 108
P R+ ++ +VL+L P+RELA+Q ++E + ++ + +V GG++
Sbjct: 95 SPYVRNSRVSSLGRVGGAVGTKVLVLLPSRELAMQCFGVLESLTKYCPVITRAVVTGGMN 154
Query: 109 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 168
+ QE L+ P IV+ATPGR++D L N++S+ L+ L ++ILDEADRLL++GF E E+
Sbjct: 155 IQQQERILKCQPHIVIATPGRILDMLLNTLSIQLELLEIIILDEADRLLDMGFRQECLEI 214
Query: 169 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLS----------ADPSAKR------- 211
++ + RQTMLFSATL+ V +L L+L P ++S S +
Sbjct: 215 LKYSSRTRQTMLFSATLSRSVTDLALLALNNPCKVSTVGLKSGIKSVGSSGESELLSITG 274
Query: 212 -PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKA 270
STL +E + I + E +E L + +K FT +VI+F TK+ AHR IL + L +
Sbjct: 275 LSSTLEQEFLEITKEEE--REGALFYILNKIFTKRVIVFFQTKKEAHRCAILGNIFGLSS 332
Query: 271 AELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHR 330
ELHG L Q +RLE F+ VD L A+++AARGLD+ V VIN+ P + + Y+HR
Sbjct: 333 TELHGFLPQEKRLENFSKFKSGQVDILFASELAARGLDVQDVSAVINFTIPLEASRYIHR 392
Query: 331 VGRTARAGREGYAVTFVTDNDRSLLKAIAK---RAGSK---------------LKSRIVA 372
VGRTAR G +G +T T ++RS LKA+ K RAG+K +K R +A
Sbjct: 393 VGRTARIGSKGNCITIYTRSERSQLKALMKQVLRAGNKSSVAGRDTKENVSSIMKKRTLA 452
Query: 373 EQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPK 428
+I +W + I E QV ++ + E+ LR AEM+ KA+N++ HK++I +RP+
Sbjct: 453 TNNINQWVEKISNSEKQVKDAIKADITEKELRIAEMQVNKAQNILLHKKDIESRPR 508
>gi|32399059|emb|CAD98299.1| DEAD/DEAH box RNA helicase, possible [Cryptosporidium parvum]
Length = 543
Score = 331 bits (849), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 280/476 (58%), Gaps = 52/476 (10%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LSRPLL+A L + + T IQ IPLAL+GRDI A TGSGKTAAF LP LERLL
Sbjct: 5 LELSRPLLKALSDLNFVEATLIQKEVIPLALSGRDIMAEAETGSGKTAAFLLPALERLLR 64
Query: 63 RP----KRIPAI---------RVLILTPTRELAVQVHSMIEKIAQFTDIRC-CLVVGGLS 108
P R+ ++ +VL+L P+RELA+Q ++E + ++ + +V GG++
Sbjct: 65 SPYVRNSRVSSLGRVGGAVGTKVLVLLPSRELAMQCFGVLESLTKYCPVITRAVVTGGMN 124
Query: 109 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 168
+ QE L+ P IV+ATPGR++D L N++S+ L+ L ++ILDEADRLL++GF E E+
Sbjct: 125 IQQQERILKCQPHIVIATPGRILDMLLNTLSIQLELLEIIILDEADRLLDMGFRQECLEI 184
Query: 169 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLS----------ADPSAKR------- 211
++ + RQTMLFSATL+ V +L L+L P ++S S +
Sbjct: 185 LKYSSRTRQTMLFSATLSRSVTDLALLALNNPCKVSTVGLKSGIKSVGSSGESELLSITG 244
Query: 212 -PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKA 270
STL +E + I + E +E L + +K FT +VI+F TK+ AHR IL + L +
Sbjct: 245 LSSTLEQEFLEITKEEE--REGALFYILNKIFTKRVIVFFQTKKEAHRCAILGNIFGLSS 302
Query: 271 AELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHR 330
ELHG L Q +RLE F+ VD L A+++AARGLD+ V VIN+ P + + Y+HR
Sbjct: 303 TELHGFLPQEKRLENFSKFKSGQVDILFASELAARGLDVQDVSAVINFTIPLEASRYIHR 362
Query: 331 VGRTARAGREGYAVTFVTDNDRSLLKAIAK---RAGSK---------------LKSRIVA 372
VGRTAR G +G +T T ++RS LKA+ K RAG+K +K R +A
Sbjct: 363 VGRTARIGSKGNCITIYTRSERSQLKALMKQVLRAGNKSSVAGRDTKENVSSIMKKRTLA 422
Query: 373 EQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPK 428
+I +W + I E QV ++ + E+ LR AEM+ KA+N++ HK++I +RP+
Sbjct: 423 TNNINQWVEKISNSEKQVKDAIKADITEKELRIAEMQVNKAQNILLHKKDIESRPR 478
>gi|156096011|ref|XP_001614040.1| DEAD/DEAH box helicase [Plasmodium vivax Sal-1]
gi|148802914|gb|EDL44313.1| DEAD/DEAH box helicase, putative [Plasmodium vivax]
Length = 737
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 199/550 (36%), Positives = 307/550 (55%), Gaps = 54/550 (9%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L +SRP L+ ++ PT IQ IPLAL G+ I ++ TGSGKT AF LP LERLL
Sbjct: 108 DLYISRPFLKVLYEGKFNNPTFIQRDVIPLALEGKSILANSETGSGKTLAFVLPILERLL 167
Query: 62 ---------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 112
Y P+ + + LIL PTRELA+Q + +++ + ++ I L GG+ K Q
Sbjct: 168 HSPNIKMRSYNPRSVCVTKSLILLPTRELALQCYDVVKSMTKYVSITYSLFCGGIDVKQQ 227
Query: 113 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172
E + DI + TPGR++D L NS S ++ L V++ DEAD+LLELGF E +++ +C
Sbjct: 228 EYEYKKKKDIFICTPGRILDLLLNSSSDFINYLEVVVFDEADKLLELGFKEECLKVLDVC 287
Query: 173 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKR--------PST---------- 214
++Q + FSATLT D+ EL SL P+ + + ++ PS
Sbjct: 288 KFKKQILFFSATLTRDIKELANFSLKNPIFIQSGVDNRKVDAKGEVIPSYVSNKKILKSF 347
Query: 215 -----LTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALK 269
L +E V I + E + A LL LCS + + IIF TK+ H + ++F L K
Sbjct: 348 KISEKLNQEFVNI--VNEKYRRAALLHLCSNVYKNHAIIFFKTKKETHLMYLIFSLFNFK 405
Query: 270 AAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVH 329
AELHG+LTQ +R+E++ F+K VDFL+ T++A+RGLDI + VINY P ++ YVH
Sbjct: 406 CAELHGSLTQKKRIESILKFKKNEVDFLLCTELASRGLDIDHILYVINYNLPSNVIKYVH 465
Query: 330 RVGRTARAGREGYAVTFVTDNDRS----LLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQ 385
R+GRTAR G++G A T N+++ ++K + K +K+ R ++ SI+ W ++ +
Sbjct: 466 RIGRTARIGKDGTASTLYRPNEKADVKKIIKGLKKSKNAKIFRRNISSDSISHWDDLLRK 525
Query: 386 MEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEK----KLA 441
+ ++ +++EE+E + + KA K +N+I K+EI +RP R WF+T KEK KL
Sbjct: 526 KKKKIKEMIKEEKENKEIDKATKSIEKIKNLIQFKDEIMSRPPREWFLTNKEKLRLRKLN 585
Query: 442 VKADKASIEKG----KGSGNEVTS-----AQQAEDLKIKEKRKREREKNLPRKERRKLEA 492
+K+D + + G G G+ S + D + RKR+ K RK +RK
Sbjct: 586 MKSDMSCGDSGGEDHTGGGSPRKSDSDKKGARKNDTGKQRARKRDSGKQNTRKAKRK--- 642
Query: 493 AREMLEDEDQ 502
+R E++D+
Sbjct: 643 SRNSDEEDDR 652
>gi|323509459|dbj|BAJ77622.1| cgd6_4830 [Cryptosporidium parvum]
Length = 532
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 280/476 (58%), Gaps = 52/476 (10%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LSRPLL+A L + + T IQ IPLAL+GRDI A TGSGKTAAF LP LERLL
Sbjct: 5 LELSRPLLKALSDLNFVEATLIQKEVIPLALSGRDIMAEAETGSGKTAAFLLPALERLLR 64
Query: 63 RP----KRIPAI---------RVLILTPTRELAVQVHSMIEKIAQFTDIRC-CLVVGGLS 108
P R+ ++ +VL+L P+RELA+Q ++E + ++ + +V GG++
Sbjct: 65 SPYVRNSRVSSLGRVGGAVGTKVLVLLPSRELAMQCFGVLESLTKYCPVITRAVVTGGMN 124
Query: 109 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 168
+ QE L+ P IV+ATPGR++D L N++S+ L+ L ++ILDEADRLL++GF E E+
Sbjct: 125 IQQQERILKCQPHIVIATPGRILDMLLNTLSIQLELLEIIILDEADRLLDMGFRQECLEI 184
Query: 169 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLS----------ADPSAKR------- 211
++ + RQTMLFSATL+ V +L L+L P ++S S +
Sbjct: 185 LKYSSRTRQTMLFSATLSRSVTDLALLALNNPCKVSTVGLKSGIKSVGSSGESELLSITG 244
Query: 212 -PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKA 270
STL +E + I + E +E L + +K FT +VI+F TK+ AHR IL + L +
Sbjct: 245 LSSTLEQEFLEITKEEE--REGALFYILNKIFTKRVIVFFQTKKEAHRCAILGNIFGLSS 302
Query: 271 AELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHR 330
ELHG L Q +RLE F+ VD L A+++AARGLD+ V VIN+ P + + Y+HR
Sbjct: 303 TELHGFLPQEKRLENFSKFKSGQVDILFASELAARGLDVQDVSAVINFTIPLEASRYIHR 362
Query: 331 VGRTARAGREGYAVTFVTDNDRSLLKAIAK---RAGSK---------------LKSRIVA 372
VGRTAR G +G +T T ++RS LKA+ K RAG+K +K R +A
Sbjct: 363 VGRTARIGSKGNCITIYTRSERSQLKALMKQVLRAGNKSSVAGRDTKENVSSIMKKRTLA 422
Query: 373 EQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPK 428
+I +W + I E QV ++ + E+ LR AEM+ KA+N++ HK++I +RP+
Sbjct: 423 TNNINQWVEKISNSEKQVKDAIKADITEKELRIAEMQVNKAQNILLHKKDIESRPR 478
>gi|159114905|ref|XP_001707676.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
gi|157435783|gb|EDO80002.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
Length = 625
Score = 325 bits (832), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 230/660 (34%), Positives = 353/660 (53%), Gaps = 100/660 (15%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSR L RA LG+ PT +Q IP+ L GRD SA+TGSGKT AF +P LER++
Sbjct: 6 LSLSRQLTRAVLRLGWKFPTTVQEKVIPIVLAGRDALVSAVTGSGKTGAFGIPLLERMIL 65
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
R + LIL+PTRELA Q ++++++A FT+ R L++GG T Q LR+ PDI
Sbjct: 66 RGRDTYGTTALILSPTRELAAQTAAVLQELAYFTNFRVYLLIGGTDTAKQAAQLRTEPDI 125
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+VATPGR+ID +RN+++ LD + VL+LDE D++L++GF E+ E+ LCP RQT+LFS
Sbjct: 126 IVATPGRLIDLVRNTVNFSLDTIEVLVLDEGDKMLDIGFHDELKEICALCPVARQTLLFS 185
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-----RRMRE---------- 227
AT+ ++V L+L KPL++ DP T+T+E V I R+ E
Sbjct: 186 ATMEKEVLSFSLLALQKPLQVQIDPPRTVAQTITQEFVMITPTLLRKCTEKFKGEDSSLK 245
Query: 228 ------VNQEAVLLSLCSKTFTS-----KVIIFSGTKQAAHRLKILFG------------ 264
+ ++ +L+SL F+S K+++F +K+ R+ IL
Sbjct: 246 SSTLSAIARDILLVSLLRNNFSSEDGQHKIMVFCNSKREVRRVFILLDMLSKPPEDAARS 305
Query: 265 --LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR 322
LA ++ + LHG+ +Q +R L+ FR ++ L+ +DVA+RGLDI V VI Y P
Sbjct: 306 CLLAGIRPSCLHGDSSQKERATELDRFRSGDINLLVCSDVASRGLDIENVTVVIQYDFPL 365
Query: 323 DLTSYVHRVGRTARAGREGYAVTFVTDN--DRSLLKAIA----KRA-GSKLKSRIVAEQS 375
L ++HRVGRT RA G ++TFV DN ++++LK I +RA G L+ R + +
Sbjct: 366 SLDVHIHRVGRTGRADAPGTSITFVHDNAQEQNVLKEIQDSQKERAKGQPLRQRKIDSKL 425
Query: 376 ITKWSKII--EQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFV 433
IT + + D++ + E ++ E++ KAEN++ K+EIF+RPK+TWF
Sbjct: 426 ITTITHYFVHNSVPDKLKRRVDRMNLEMAVKMEEIKIKKAENIMEFKDEIFSRPKKTWFQ 485
Query: 434 TEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAA 493
TE EK ++A A + G +T+ + DL +E +K L RK+ +
Sbjct: 486 TEAEKA-NLRALHARVVSGA-----ITNKEAVRDL------SKEEQKYL-----RKITSE 528
Query: 494 REMLEDEDQVDKLQGSGKDKKEKAGISMVDLAYRRAKAVKAKQKALDAGKIVKSNGKKSK 553
+M+ K+++E + V LA RAK +A++ + G +S G+
Sbjct: 529 AKMV-------------KNRQENSLPPDV-LASIRAKK-RAERNLREEG---ESPGEVRN 570
Query: 554 HSSQES-----------NSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHSFKSKSRYKRR 602
+E+ + +K R L ++ + KR GKKP FKSK RYKRR
Sbjct: 571 RMYEEARIQRRAIRMQRKTDSKNNRNLDDQTVAPYQMKR----GKKPT-GFKSKKRYKRR 625
>gi|308160612|gb|EFO63089.1| ATP-dependent RNA helicase [Giardia lamblia P15]
Length = 625
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 185/485 (38%), Positives = 281/485 (57%), Gaps = 49/485 (10%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSR L RA LG+ PTP+Q IP+ L GRD SA+TGSGKT AF +P LER++
Sbjct: 6 LSLSRQLTRAVLRLGWKFPTPVQEKVIPIVLAGRDALVSAVTGSGKTGAFGIPLLERMIL 65
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
R + LIL+PTRELA Q ++++++A FT+ R L++GG T Q LR+ PDI
Sbjct: 66 RGRDTYGTTALILSPTRELAAQTAAVLQELAYFTNFRVYLLIGGTDTARQAAQLRTEPDI 125
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+VATPGR+ID +RN+++ LD + VL+LDE D++L++GF E+ E+ LCP RQT+LFS
Sbjct: 126 IVATPGRLIDLVRNTVNFSLDTIEVLVLDEGDKMLDIGFHDELKEICALCPIARQTLLFS 185
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-----RRMRE---------- 227
AT+ ++V L+L KPL++ DP T+T+E V + R+ E
Sbjct: 186 ATIEKEVLSFSLLALQKPLQVQIDPPRTVAQTITQEFVMVTPTLLRKCTEKFKNEDSSLK 245
Query: 228 ------VNQEAVLLSLCSKTFTS-----KVIIFSGTKQAAHRLKILFG------------ 264
+ ++ +L++L F+S K+++F +K+ R+ IL
Sbjct: 246 SSTLSAIARDILLVALLRNNFSSEDSQHKIMVFCNSKREVRRVFILLDMLSKQPEDTTRS 305
Query: 265 --LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR 322
LA ++ + LHG+ +Q +R L+ FR ++ L+ +DVA+RGLDI V VI Y P
Sbjct: 306 CLLAGIRPSCLHGDSSQKERATELDRFRSGDINLLVCSDVASRGLDIENVTVVIQYDFPL 365
Query: 323 DLTSYVHRVGRTARAGREGYAVTFVTDN--DRSLLKAIA----KRA-GSKLKSRIVAEQS 375
L ++HRVGRT RA G ++TFV DN ++ +LK I +RA G L+ R + +
Sbjct: 366 SLDIHIHRVGRTGRADAPGTSITFVHDNSQEQGVLKEIQDSQKERAKGQPLRQRKIDSKL 425
Query: 376 ITKWSKII--EQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFV 433
IT + + D++ + E ++ E++ KAEN++ K+EIF++PK+TWF
Sbjct: 426 ITTVTHYFVHNSVPDKLKRRVDRMNLEMAVKMEEIKIKKAENIMEFKDEIFSKPKKTWFQ 485
Query: 434 TEKEK 438
TE EK
Sbjct: 486 TEAEK 490
>gi|253744998|gb|EET01115.1| ATP-dependent RNA helicase [Giardia intestinalis ATCC 50581]
Length = 625
Score = 322 bits (826), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 224/658 (34%), Positives = 351/658 (53%), Gaps = 96/658 (14%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LSRPL RA LG+ PT +Q IP+ L GRD SA+TGSGKT AF +P LER++
Sbjct: 6 LSLSRPLTRAVLRLGWKFPTTVQEKVIPIVLAGRDALVSAVTGSGKTGAFGIPLLERMVL 65
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
R K L+L+PTRELA Q ++++++A FT+ R L++GG T Q LR+ PDI
Sbjct: 66 RGKDTYGTTALVLSPTRELAAQTAAVLQELAYFTNFRVYLLIGGTDTAKQAAQLRTEPDI 125
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+VATPGR+ID +RN+++ LD + VL+LDE D++L++GF E+ E+ LCP RQT+LFS
Sbjct: 126 IVATPGRLIDLVRNTVNFSLDTIEVLVLDEGDKMLDIGFHDELKEICTLCPVARQTLLFS 185
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-----RRMRE---------- 227
AT+ ++V L+L KPL++ DP T+T+E V + R+ E
Sbjct: 186 ATMQKEVLSFSLLALQKPLQVQIDPPRTVAQTITQEFVMVTPALLRKCTEKFRNEDSALK 245
Query: 228 ------VNQEAVLLSLCSKTFTS-----KVIIFSGTKQAAHRLKILFG------------ 264
+ ++ +L++L F+S K+++F +K+ R+ IL
Sbjct: 246 ASTISTIARDILLVALLRNNFSSEDSQHKIMVFCNSKREVRRVFILLDMLTKQPEDTTRS 305
Query: 265 --LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR 322
L +K + LHG+ +Q +R L+ FR ++ L+ +DVA+RGLDI V VI Y P
Sbjct: 306 CLLNGIKPSCLHGDSSQKERATELDRFRSGDINLLVCSDVASRGLDIENVTVVIQYDFPL 365
Query: 323 DLTSYVHRVGRTARAGREGYAVTFVTDN--DRSLLKAIA----KRA-GSKLKSRIVAEQS 375
L ++HRVGRT RA G ++TFV DN ++ +LK I +RA G L+ R + +
Sbjct: 366 SLDIHIHRVGRTGRADMPGTSITFVHDNAQEQGVLKEIQDSQKERAKGQPLRQRKIDPKL 425
Query: 376 ITKWSKII--EQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFV 433
I + + D++ + + E ++ E++ +AEN++ K+EIF RPK+TWF
Sbjct: 426 IATVTHYFAHNSVPDRLKRRVDKMNLEMAVQMEEIKIKRAENIMEFKDEIFNRPKKTWFQ 485
Query: 434 TEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAA 493
TE EK ++A A + G +T+ + DL +E +K L RK+ +
Sbjct: 486 TEAEKA-NLRALHARVVSGA-----ITNKEAVRDL------SKEEQKYL-----RKITSE 528
Query: 494 REMLEDEDQ----VDKLQGSGKDKKE-----KAGISMVDLAYRRAKAVKAKQKALDAGKI 544
+M+++ + D L K+E + G S ++ RR + + +++A+ +
Sbjct: 529 AKMVKNRQENSLPPDVLASIRAKKREERNLREEGESPGEVRNRRYEEARIQRRAIRMQR- 587
Query: 545 VKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKKQKRTGGIGKKPKHSFKSKSRYKRR 602
KSN K S+ + ++ + KR+ KKP FKSK RYKRR
Sbjct: 588 -KSNSKNSRDRDDQI--------------VAPYQVKRS----KKPT-GFKSKKRYKRR 625
>gi|361126045|gb|EHK98061.1| putative ATP-dependent RNA helicase drs1 [Glarea lozoyensis 74030]
Length = 678
Score = 317 bits (813), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 166/362 (45%), Positives = 236/362 (65%), Gaps = 24/362 (6%)
Query: 91 KIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLIL 150
K+A TDI+ CL VGGLS K+QE LR PD+++ATP +L
Sbjct: 263 KLASHTDIKFCLAVGGLSLKVQEAELRLRPDVIIATP---------------------VL 301
Query: 151 DEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK 210
DEADR+LE GF+ E++E++ PK RQTMLFSAT+T VD LI++ L +P+R+ D +
Sbjct: 302 DEADRMLEAGFADELNEILTTIPKSRQTMLFSATMTSSVDNLIRVGLNRPVRILVDAQKQ 361
Query: 211 RPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKA 270
TL +E +R+R RE + LL LC+ +T +VI+F K+ AHR +++FGL+ LKA
Sbjct: 362 TVGTLIQEFIRLRPGRETKRMGYLLYLCANVYTDRVIVFFRQKKEAHRARVIFGLSGLKA 421
Query: 271 AELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHR 330
ELHG+++Q QR+ ++E FR FL+ATD+A+RGLDI GV TVINY P+ Y+HR
Sbjct: 422 TELHGSMSQEQRIISVEAFRDGKASFLLATDLASRGLDIKGVDTVINYEAPQSHEIYLHR 481
Query: 331 VGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQME 387
VGRTARAGR+G A T + DR ++KA K G+K+ SR++ W++ +E+M+
Sbjct: 482 VGRTARAGRQGRACTLAAEPDRKIVKAAVKSGRSQGAKIVSRVIEAADADTWAEKVEEMQ 541
Query: 388 DQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKA 447
D++ IL+EE+E++ L + EM+ K ENMI H++EI RPKRTWF +E EK A KA +A
Sbjct: 542 DEIEEILKEEKEDKQLAQVEMQVRKGENMINHEDEIKGRPKRTWFESEVEKTAAKKAGRA 601
Query: 448 SI 449
+
Sbjct: 602 EL 603
>gi|389586602|dbj|GAB69331.1| DEAD/DEAH box helicase, partial [Plasmodium cynomolgi strain B]
Length = 633
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 191/518 (36%), Positives = 292/518 (56%), Gaps = 48/518 (9%)
Query: 29 IPLALTGRDICGSAITGSGKTAAFALPTLERLL---------YRPKRIPAIRVLILTPTR 79
IPLAL G+ I ++ TGSGKT AF LP LERLL Y P+ I + LIL PTR
Sbjct: 4 IPLALEGKSILANSETGSGKTLAFVLPILERLLHSPNIKMRSYNPRSICVTKSLILLPTR 63
Query: 80 ELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS 139
ELA+Q + +++ + ++ I L GG+ K QE + DI + TPGR++D L NS S
Sbjct: 64 ELALQCYDVVKSMTKYVTITYSLFCGGIDVKQQEYEYKKKKDIFICTPGRILDLLLNSSS 123
Query: 140 VDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTK 199
++ L V++ DEAD+LLELGF E +++ +C ++Q + FSATLT D+ EL SL
Sbjct: 124 DFINYLEVVVFDEADKLLELGFKEECLKVLDVCKFKKQILFFSATLTRDIKELANFSLKN 183
Query: 200 PLRLSAD-----------------------PSAKRPSTLTEEVVRIRRMREVNQEAVLLS 236
P+ + + S K L +E V I + E + A LL
Sbjct: 184 PIFIQSGVDNRKVDAKGEVIPRCISNKKILKSFKISEKLNQEFVNI--VNEKYRRAALLH 241
Query: 237 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 296
LCS + + IIF TK+ H + ++F L K AELHG+LTQ +R+E++ F+K VDF
Sbjct: 242 LCSNVYKNHAIIFFKTKKETHLMYLIFSLFNFKCAELHGSLTQKKRIESILKFKKNEVDF 301
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS--- 353
L+ T++A+RGLDI + VINY P ++ YVHR+GRTAR G+EG A T N+++
Sbjct: 302 LLCTELASRGLDIDHILYVINYNLPSNVIKYVHRIGRTARIGKEGTASTLYRPNEKADVK 361
Query: 354 -LLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATK 412
++K + K +K+ R ++ SI+ W ++ + + ++ +++EE+E + + KA K
Sbjct: 362 KIIKGLKKSKNAKIFRRNISNDSISHWDNLLRKKKKEIKEMIKEEKENKEIDKATKSIEK 421
Query: 413 AENMIAHKEEIFARPKRTWFVTEKEK----KLAVKADKASIEKGKG--SGNEVTSAQQAE 466
+N+I K+EI +RP R WF+T KEK KL +K+D + + G SG + T +
Sbjct: 422 IKNLIQFKDEIMSRPPREWFLTNKEKVHLRKLNMKSDMSCGDSTGGSRSGEDHTGGRSTR 481
Query: 467 DLKIKEKRKREREKNLPRKERRKLEAARE--MLEDEDQ 502
K ++R R+ + RK RK +A R+ ++D D+
Sbjct: 482 --KNDAGKQRARKNDADRKGARKNDADRKGARIKDSDK 517
>gi|344249399|gb|EGW05503.1| putative ATP-dependent RNA helicase DDX27 [Cricetulus griseus]
Length = 486
Score = 312 bits (800), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 161/336 (47%), Positives = 231/336 (68%), Gaps = 1/336 (0%)
Query: 105 GGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAE 164
GGL K QE ALR+ PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F +
Sbjct: 16 GGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQ 75
Query: 165 IHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR 224
+ E++R+C RQTMLFSAT+T++V +L +SL P+R+ + + L +E +RIR
Sbjct: 76 MKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRP 135
Query: 225 MREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLE 284
RE ++EA++ +L +TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLE
Sbjct: 136 NREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLE 195
Query: 285 ALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAV 344
AL F+ + +D L+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V
Sbjct: 196 ALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSV 255
Query: 345 TFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 404
+ V + +R +LK I K A + +K+RI+ + I K+ IE+ME V A+L+ E EE+ ++
Sbjct: 256 SLVGEEERKMLKEIVKAAKAPVKARIIPQDVILKFRDKIEKMEKDVYAVLRLEAEEKEMQ 315
Query: 405 KAEMEATKAENMIAH-KEEIFARPKRTWFVTEKEKK 439
++E + A+ ++ KE P+R+WF T+ E+K
Sbjct: 316 QSEAQIDTAKRLLEKGKETADQEPERSWFQTKAERK 351
>gi|82794666|ref|XP_728531.1| DEAD/DEAH box helicase [Plasmodium yoelii yoelii 17XNL]
gi|23484925|gb|EAA20096.1| DEAD/DEAH box helicase, putative [Plasmodium yoelii yoelii]
Length = 487
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 165/440 (37%), Positives = 257/440 (58%), Gaps = 35/440 (7%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L++S+PLL+ L + PT IQ IPLAL G+ I ++ TGSGKT AF LP LERLL
Sbjct: 48 DLHISKPLLKVLYELKFENPTYIQKDVIPLALEGKSILANSETGSGKTLAFVLPMLERLL 107
Query: 62 YRP---------KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 112
Y P K I + L+L PTRELA+Q + +I + +++ I C L GG+ +K Q
Sbjct: 108 YSPNIKLRRENRKSICITKALVLLPTRELAMQCYEVINNLIKYSPITCSLFCGGIDSKEQ 167
Query: 113 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172
E + DI V TPGR++D L NS + ++ L ++I DEAD+LLELGF E +++ +C
Sbjct: 168 ENEYKKKKDIFVCTPGRILDLLLNSSNDFINFLEIVIFDEADKLLELGFKEECLKILDVC 227
Query: 173 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADP--------------------SAKRP 212
++Q + FSATL +D+ EL SL P+ + ++ S K
Sbjct: 228 KFKKQILFFSATLXKDIKELANFSLRNPIFIQSENKNKDNKSKENINTQINKNFKSFKIS 287
Query: 213 STLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAE 272
L +E + I + E ++A LL LC++ + IIF T++ H + IL L K E
Sbjct: 288 ENLHQEFLNI--INEKYRKATLLHLCNEVYKKNCIIFFKTRKETHLMYILLKLLNFKCEE 345
Query: 273 LHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVG 332
LHG LTQ +R+E++ F+ Q VDFL+ T++A+RG+DI ++ VINY+ P ++ YVHR+G
Sbjct: 346 LHGLLTQKKRVESILKFKNQQVDFLLCTELASRGIDIDHIKYVINYSLPANVVKYVHRIG 405
Query: 333 RTARAGREGYAVTFVT----DNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMED 388
RTAR G+EG + TF +N + ++K + K SK+ R+++E+ I W I+++ +
Sbjct: 406 RTARIGKEGTSCTFFLPKEKENVKKIIKGVKKNNSSKIYKRVISEEKILHWDSIVKKNKK 465
Query: 389 QVAAILQEEREERILRKAEM 408
++ L+ E E+ + K+ +
Sbjct: 466 KMKEXLENENVEKEIEKSNI 485
>gi|402083740|gb|EJT78758.1| ATP-dependent rRNA helicase RRP3 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 485
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 174/402 (43%), Positives = 239/402 (59%), Gaps = 7/402 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + PL ACEALGY +PTPIQ IPLAL GRD+ G A TGSGKTAAFALP L+ LL
Sbjct: 61 DLGIVDPLCEACEALGYKQPTPIQTQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLL 120
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + L+L PTRELA Q+ E + +RC +VVGGL Q AL P
Sbjct: 121 DKPQPLFG---LVLAPTRELAAQIGQAFEALGSLISLRCAVVVGGLDMVSQSIALGKKPH 177
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+VVATPGR++DHL + L L L++DEADRLL+L F + ++++ P+ R+T LF
Sbjct: 178 VVVATPGRLLDHLEKTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKFLPRERRTYLF 237
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++ V+ L + SL PLR+S S+KR T+ + + ++++ L+ L ++
Sbjct: 238 SATMSSKVESLQRASLRDPLRVSV--SSKREKTVATLLQNPLIIPHMHKDVYLIYLVNEF 295
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
IIF+ T A RL IL + A LHG L+Q+ RL AL F+ + D L+ATD
Sbjct: 296 AGQTTIIFTRTVNEAQRLSILLRTLSFGAIPLHGQLSQSMRLGALNKFKAKSRDILVATD 355
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V VINY P D +Y+HRVGRTARAGR G A++ VT D L I K
Sbjct: 356 VAARGLDIPEVDLVINYDLPGDSMTYIHRVGRTARAGRSGRAISIVTQYDVELWMRIEKA 415
Query: 362 A--GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 401
A G KL + + + + + +E+ + ++E E+R
Sbjct: 416 ALDGRKLPTYQPDREEVMVFKERVEEAQRVARNEMKELHEDR 457
>gi|358254115|dbj|GAA54145.1| ATP-dependent RNA helicase DDX27 [Clonorchis sinensis]
Length = 586
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 164/354 (46%), Positives = 218/354 (61%), Gaps = 28/354 (7%)
Query: 16 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRI--PAIRVL 73
+ KP PIQ ACIP+AL DIC A TGSGKT AF LP LERL +P R L
Sbjct: 1 MSLEKPMPIQCACIPVALLNHDICACARTGSGKTFAFLLPILERLTKKPSGTARSITRAL 60
Query: 74 ILTPTRELAVQVHSMIEKIAQFTD-IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMID 132
+++PTRELAVQ+ + EK+ + IR L GGL QE +LR PD+V+ATPGR+ID
Sbjct: 61 VISPTRELAVQIFRVAEKLVAYCPKIRIQLAAGGLDLHTQEASLRLNPDLVIATPGRLID 120
Query: 133 HLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDEL 192
HL N+ + +L + L+LDEAD+LL+ F +I E+V+ C ++RQT+LFSAT+TE V EL
Sbjct: 121 HLSNAPNFNLQQIEYLVLDEADKLLDEYFVEQISEIVKHCGRQRQTLLFSATMTESVKEL 180
Query: 193 IKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGT 252
LSL P+++ + + L +E +RIR RE ++ A+L++L +TF+ + I+F T
Sbjct: 181 ATLSLKNPVQVFLNQTTAVAKRLQQEFIRIRPHREEDRAAILVALLVRTFSKRTIVFLPT 240
Query: 253 KQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR---------------------- 290
K+ HR+ IL L +ELHG++TQAQRLEAL F
Sbjct: 241 KKECHRMHILLSLIGHSCSELHGDMTQAQRLEALRRFSESVDSHPAESASGNTASTKPVE 300
Query: 291 ---KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREG 341
K VD L+ATD+AARGLDI VQT+INY P+ + YVHRVGRTARA G
Sbjct: 301 DVPKPQVDILLATDLAARGLDIPNVQTIINYNLPQTMKQYVHRVGRTARAANTG 354
>gi|340508005|gb|EGR33819.1| hypothetical protein IMG5_036350 [Ichthyophthirius multifiliis]
Length = 347
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 154/342 (45%), Positives = 233/342 (68%), Gaps = 4/342 (1%)
Query: 112 QETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL 171
QE LR PD++++TPGR+IDHLRNS VDLD+L +L+ DEAD+ LELGF +EI E+++
Sbjct: 4 QEAELRRFPDLIISTPGRLIDHLRNSKCVDLDNLEILVFDEADKQLELGFESEIKEILQN 63
Query: 172 CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE 231
C + RQT+LFSATL + V LI L+L KP+R+ + S LT+++++I E +E
Sbjct: 64 CSRDRQTLLFSATLNDSVQSLIDLALKKPVRIKINASNSTNDKLTQKMLKIPF--ENTRE 121
Query: 232 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 291
A LL++ +K + K +IF TK+ HR+ I+FGL L ELHGN+TQ QR++A F++
Sbjct: 122 ASLLAVAAKFYKDKTVIFFKTKKQCHRMAIIFGLFKLSVCELHGNMTQNQRIQAFTDFKE 181
Query: 292 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
+L+ATD+AARGLDI G++ VINY P +++ Y+HRVGRTARAG+EG ++T T+ +
Sbjct: 182 GKYSYLMATDLAARGLDIQGLKAVINYELPTEVSRYIHRVGRTARAGKEGVSLTLGTEQE 241
Query: 352 -RSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEA 410
+SL K + + S +K + E + + I+ +E ++ ++ EE+ ER LRKAEME
Sbjct: 242 LKSLKKMLKENQDSAMKKFSIPEDILKSYQDKIKGIEREIERVIDEEQAERQLRKAEMEM 301
Query: 411 TKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADK-ASIEK 451
KAEN+I +++I +PK+TWF T +++ +A K AS++K
Sbjct: 302 KKAENLIKFQDDILNKPKKTWFQTNQQRNQIREASKEASLQK 343
>gi|367033825|ref|XP_003666195.1| hypothetical protein MYCTH_2096529 [Myceliophthora thermophila ATCC
42464]
gi|347013467|gb|AEO60950.1| hypothetical protein MYCTH_2096529 [Myceliophthora thermophila ATCC
42464]
Length = 493
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 167/401 (41%), Positives = 238/401 (59%), Gaps = 7/401 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L ACE LGY PTPIQ IPLAL RDI G A TGSGKTAAFALP L+ LL
Sbjct: 69 DLGIVDSLCDACERLGYKNPTPIQQEAIPLALQNRDIIGIAETGSGKTAAFALPILQALL 128
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + A L+L PTRELA Q+ E + +RC L++GGL Q AL P
Sbjct: 129 DKPQPLFA---LVLAPTRELAAQIAQAFEALGSLISLRCALILGGLDMVQQAIALGKKPH 185
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+VVATPGR++DHL + L +L L++DEADRLL++ F + ++++ P+ R+T LF
Sbjct: 186 VVVATPGRLLDHLEKTKGFSLRNLKFLVMDEADRLLDMDFGPILEKILKFLPRERRTFLF 245
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT++ V+ L + SL PL++S S + STL + + I M +++ L+ LC++
Sbjct: 246 SATMSSKVESLQRASLRDPLKVSISSSKYQTVSTLVQNYIFIPHM---HKDTYLIYLCNE 302
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+IIF+ T R+ IL + A LHG L+Q+ RL AL FR + D L+AT
Sbjct: 303 FAGQTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAKSRDILVAT 362
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V V+N+ P+D +YVHRVGRTARAG+ G+A++FVT D + I
Sbjct: 363 DVAARGLDIPNVDCVLNFDLPQDSKTYVHRVGRTARAGKSGHAISFVTQYDLEIWLRIEA 422
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 401
G+KL + + + +E+ + +++ E+R
Sbjct: 423 ALGTKLTEYATEKDEVMVFKPRVEEAQRHAKNEMKQLLEDR 463
>gi|70937865|ref|XP_739683.1| DEAD/DEAH box helicase [Plasmodium chabaudi chabaudi]
gi|56516861|emb|CAH80123.1| DEAD/DEAH box helicase, putative [Plasmodium chabaudi chabaudi]
Length = 451
Score = 305 bits (781), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 161/406 (39%), Positives = 241/406 (59%), Gaps = 30/406 (7%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L++SRPLL+ L + PT IQ IPLAL G+ I ++ TGSGKT AF LP LERLL
Sbjct: 48 DLHISRPLLKVLYELKFENPTYIQKDVIPLALEGKSILANSETGSGKTLAFVLPMLERLL 107
Query: 62 YRP---------KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 112
Y P K + + LIL PTRELA+Q + +I + +++ I C L GG+ K Q
Sbjct: 108 YSPNIKLRKENRKSVNITKALILLPTRELAMQCYDVINSLIKYSPITCSLFCGGIDPKEQ 167
Query: 113 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172
E + DI V TPGR++D L NS + +D L ++I DEAD+LLELGF E +++ +C
Sbjct: 168 ENEYKKKKDIFVCTPGRILDLLLNSSNDFIDYLEIVIFDEADKLLELGFKEECLKILDVC 227
Query: 173 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADP---------------SAKRPSTLTE 217
++Q + FSATLT+D+ EL SL P+ + ++ S K L +
Sbjct: 228 KFKKQILFFSATLTKDIKELANFSLRNPIFIQSENKNKDDKNKQTNKNLKSFKISENLHQ 287
Query: 218 EVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNL 277
E + I + E ++A LL LC++ + + IIF T++ H + IL L K ELHG +
Sbjct: 288 EFLNI--INEKYRKATLLHLCNEVYKNHCIIFFKTRKETHLMYILLKLLDFKCEELHGLM 345
Query: 278 TQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 337
+Q +R+E++ F+ Q VDFL+ T++A+RG+DI V+ V+NY+ P + YVHR+GRTAR
Sbjct: 346 SQKKRIESILKFKNQEVDFLLCTELASRGIDIDHVKYVVNYSLPASVVKYVHRIGRTARI 405
Query: 338 GREGYAVTFVT----DNDRSLLKAIAKRAGSKLKSRIVAEQSITKW 379
G++G A TF +N + ++K + K SK+ R+++E+ I W
Sbjct: 406 GKKGTACTFFLPKEKENVKKIIKGVKKNNNSKIYKRVISEEKILHW 451
>gi|308810755|ref|XP_003082686.1| DEAD/DEAH box helicase, putative (ISS) [Ostreococcus tauri]
gi|116061155|emb|CAL56543.1| DEAD/DEAH box helicase, putative (ISS) [Ostreococcus tauri]
Length = 448
Score = 304 bits (779), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 189/469 (40%), Positives = 265/469 (56%), Gaps = 47/469 (10%)
Query: 159 LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEE 218
+GF EI E+VR CPK+RQT+LFSATLT V+ L LS+ P RLSAD P L EE
Sbjct: 1 MGFLEEIKEIVRQCPKKRQTLLFSATLTAGVEALASLSMKNPARLSADTLGTTPEHLIEE 60
Query: 219 VVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 278
V++++ + +EA L+++ S++F I+F+ TKQ AHRLKI+ GL+ +KA ELHG++T
Sbjct: 61 VLKLKPNQSAQKEAFLMAIVSRSFDKSTIVFTKTKQQAHRLKIIMGLSKVKAGELHGDMT 120
Query: 279 QAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 338
Q QRL AL+ FR V LIATDVAARGLDI V VI+Y P+ L SY+HRVGRTARAG
Sbjct: 121 QTQRLAALDDFRTGRVTHLIATDVAARGLDIPSVDAVISYDAPKTLASYLHRVGRTARAG 180
Query: 339 REGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEER 398
++G A+TF+ ++DR L+K +AKR G+ LK+R+V + +W K IE ME+++ I EER
Sbjct: 181 KKGTALTFMEESDRKLVKTVAKR-GANLKARVVPGNIVAEWHKKIEVMEEKIVHINYEER 239
Query: 399 EERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNE 458
ER L KAEMEA KA N++ H EI +RP +TWF +E+EK+ ++K NE
Sbjct: 240 TERQLAKAEMEANKASNLLEHAAEIKSRPAKTWFQSEREKR--------DVQKQAVKANE 291
Query: 459 VTSAQQAEDLKIKEKRKREREKNLP------RKERRKLEAAREMLEDEDQVDKLQGSGKD 512
+ +++ KR +E P +K RR+L A R + E VD G
Sbjct: 292 TAEIDLMDRKSLRKSLKRGKEIAGPDRLPAGKKARREL-ARRNLYAKEHGVDADDGPKGG 350
Query: 513 KKEKAGISMVDLAYRRAKAVKAKQKALDAGKIVKSNGKKSKHSSQESNSRAKEMRELFHS 572
+ G+ + R A+ A AGK+V+ K +N + R
Sbjct: 351 VRVTKGVKSIKALEREARLTGA-----TAGKVVRMVKK-------AANPPKRAPRAADPD 398
Query: 573 DMSEKKQKRTGGIG-------------------KKPKHSFKSKSRYKRR 602
D ++ R G G K K +FKS+S+Y+R+
Sbjct: 399 DDFTQRSGRGAGYGGKLRTGVRPGSTSTANRPFKSVKGAFKSQSKYRRK 447
>gi|389642833|ref|XP_003719049.1| ATP-dependent rRNA helicase RRP3 [Magnaporthe oryzae 70-15]
gi|351641602|gb|EHA49465.1| ATP-dependent rRNA helicase RRP3 [Magnaporthe oryzae 70-15]
Length = 562
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 167/368 (45%), Positives = 225/368 (61%), Gaps = 9/368 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + PL ACEAL + KPTPIQ IPLAL GRD+ G A TGSGKTAAFALP L+ LL
Sbjct: 138 DLGIVEPLCEACEALKFKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLL 197
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + L+L PTRELA Q+ E + +RC +VVGGL Q TAL P
Sbjct: 198 EKPQPLFG---LVLAPTRELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSTALGKKPH 254
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IVVATPGR++DHL + L L L++DEADRLL+L F + ++++ P+ R+T LF
Sbjct: 255 IVVATPGRLLDHLEKTKGFSLRSLKFLVMDEADRLLDLDFGPILDKILKFLPRERRTFLF 314
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT++ V+ L + SL PL++S S ++ STL + + I +++ L+ L ++
Sbjct: 315 SATMSSKVESLQRASLRDPLKVSVSSSQEKTVSTLIQNPLFIPHK---HKDVYLIYLANE 371
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
I+F+ T A R+ IL + A LHG L+Q+ RL AL F+ + D L+AT
Sbjct: 372 FAGKTTIVFTRTVNEAQRVSILLRTLSFGAIPLHGQLSQSMRLGALNKFKARSRDILVAT 431
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V VIN+ P+D +Y+HRVGRTARAGR G A++ +T D L I K
Sbjct: 432 DVAARGLDIPEVDLVINFDMPQDSMTYIHRVGRTARAGRSGRAISIITQYDLELWLRIEK 491
Query: 361 RA--GSKL 366
A G KL
Sbjct: 492 AALNGRKL 499
>gi|152060562|sp|A4RGD1.1|RRP3_MAGO7 RecName: Full=ATP-dependent rRNA helicase RRP3
Length = 538
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 167/368 (45%), Positives = 225/368 (61%), Gaps = 9/368 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + PL ACEAL + KPTPIQ IPLAL GRD+ G A TGSGKTAAFALP L+ LL
Sbjct: 114 DLGIVEPLCEACEALKFKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLL 173
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + L+L PTRELA Q+ E + +RC +VVGGL Q TAL P
Sbjct: 174 EKPQPLFG---LVLAPTRELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSTALGKKPH 230
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IVVATPGR++DHL + L L L++DEADRLL+L F + ++++ P+ R+T LF
Sbjct: 231 IVVATPGRLLDHLEKTKGFSLRSLKFLVMDEADRLLDLDFGPILDKILKFLPRERRTFLF 290
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT++ V+ L + SL PL++S S ++ STL + + I +++ L+ L ++
Sbjct: 291 SATMSSKVESLQRASLRDPLKVSVSSSQEKTVSTLIQNPLFIPHK---HKDVYLIYLANE 347
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
I+F+ T A R+ IL + A LHG L+Q+ RL AL F+ + D L+AT
Sbjct: 348 FAGKTTIVFTRTVNEAQRVSILLRTLSFGAIPLHGQLSQSMRLGALNKFKARSRDILVAT 407
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V VIN+ P+D +Y+HRVGRTARAGR G A++ +T D L I K
Sbjct: 408 DVAARGLDIPEVDLVINFDMPQDSMTYIHRVGRTARAGRSGRAISIITQYDLELWLRIEK 467
Query: 361 RA--GSKL 366
A G KL
Sbjct: 468 AALNGRKL 475
>gi|119496543|ref|XP_001265045.1| ATP-dependent RNA helicase , putative [Neosartorya fischeri NRRL
181]
gi|143462290|sp|A1D405.1|RRP3_NEOFI RecName: Full=ATP-dependent rRNA helicase rrp3
gi|119413207|gb|EAW23148.1| ATP-dependent RNA helicase , putative [Neosartorya fischeri NRRL
181]
Length = 472
Score = 301 bits (770), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 159/366 (43%), Positives = 221/366 (60%), Gaps = 5/366 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L ACE +GY PTPIQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+
Sbjct: 56 DLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALM 115
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ LIL PTRELA Q+ E + ++RC ++VGG+ Q AL P
Sbjct: 116 EKPQSFFG---LILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPH 172
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L L L++DEADRLL++ F + +++++ P+ R+T LF
Sbjct: 173 IIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFLF 232
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++ V+ L + SL+ PLR+S S+ + T++ + + +++ L+ L ++
Sbjct: 233 SATMSSKVESLQRASLSNPLRVSV--SSNKYQTVSTLLQSYLFLPHKHKDIYLVYLLNEF 290
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
IIF+ T R+ L A LHG L+Q+ RL AL FR + D L+ATD
Sbjct: 291 VGQSAIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATD 350
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V V+N+ P D +YVHRVGRTARAG+ G A++FVT D + I
Sbjct: 351 VAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRIEGA 410
Query: 362 AGSKLK 367
G KLK
Sbjct: 411 LGKKLK 416
>gi|159130845|gb|EDP55958.1| ATP-dependent RNA helicase , putative [Aspergillus fumigatus A1163]
Length = 472
Score = 301 bits (770), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 159/366 (43%), Positives = 221/366 (60%), Gaps = 5/366 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L ACE +GY PTPIQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+
Sbjct: 56 DLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALM 115
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ LIL PTRELA Q+ E + ++RC ++VGG+ Q AL P
Sbjct: 116 EKPQSFFG---LILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPH 172
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L L L++DEADRLL++ F + +++++ P+ R+T LF
Sbjct: 173 IIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFLF 232
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++ V+ L + SL+ PLR+S S+ + T++ + + +++ L+ L ++
Sbjct: 233 SATMSSKVESLQRASLSNPLRVSV--SSNKYQTVSTLLQSYLFLPHKHKDIYLVYLLNEF 290
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
IIF+ T R+ L A LHG L+Q+ RL AL FR + D L+ATD
Sbjct: 291 VGQSTIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATD 350
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V V+N+ P D +YVHRVGRTARAG+ G A++FVT D + I
Sbjct: 351 VAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRIEGA 410
Query: 362 AGSKLK 367
G KLK
Sbjct: 411 LGKKLK 416
>gi|70991044|ref|XP_750371.1| ATP-dependent RNA helicase [Aspergillus fumigatus Af293]
gi|74669652|sp|Q4WJE9.1|RRP3_ASPFU RecName: Full=ATP-dependent rRNA helicase rrp3
gi|66848003|gb|EAL88333.1| ATP-dependent RNA helicase , putative [Aspergillus fumigatus Af293]
Length = 472
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 159/366 (43%), Positives = 220/366 (60%), Gaps = 5/366 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L ACE +GY PTPIQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+
Sbjct: 56 DLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALM 115
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ LIL PTRELA Q+ E + ++RC ++VGG+ Q AL P
Sbjct: 116 ENPQSFFG---LILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPH 172
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L L L++DEADRLL++ F + +++++ P+ R+T LF
Sbjct: 173 IIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFLF 232
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++ V+ L + SL+ PLR+S S+ + T++ + + +++ L+ L ++
Sbjct: 233 SATMSSKVESLQRASLSNPLRVSV--SSNKYQTVSTLLQSYLFLPHKHKDIYLVYLLNEF 290
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
IIF+ T R+ L A LHG L+Q+ RL AL FR + D L+ATD
Sbjct: 291 VGQSTIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATD 350
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V V+N+ P D +YVHRVGRTARAG+ G A++FVT D + I
Sbjct: 351 VAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRIEGA 410
Query: 362 AGSKLK 367
G KLK
Sbjct: 411 LGKKLK 416
>gi|367044830|ref|XP_003652795.1| hypothetical protein THITE_2114564 [Thielavia terrestris NRRL 8126]
gi|347000057|gb|AEO66459.1| hypothetical protein THITE_2114564 [Thielavia terrestris NRRL 8126]
Length = 490
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 164/401 (40%), Positives = 239/401 (59%), Gaps = 7/401 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L AC+ LGY +PTPIQ IPLAL GRDI G A TGSGKTAAFALP L+ LL
Sbjct: 66 DLGIVDSLCDACDRLGYKRPTPIQEQSIPLALQGRDIIGIAETGSGKTAAFALPILQALL 125
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + A L+L PTRELA Q+ E + +RC L++GGL Q AL P
Sbjct: 126 DKPQPLFA---LVLAPTRELAAQITQAFEALGSLISLRCALILGGLDMVQQAIALGKKPH 182
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+VVATPGR++DHL + L +L L++DEADRLL++ F + ++++ P+ R+T LF
Sbjct: 183 VVVATPGRLLDHLEKTKGFSLRNLKYLVMDEADRLLDMDFGPILEKILKFLPRERRTFLF 242
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT++ V+ L + SL PL++S S + +TL + + I M +++ L+ LC++
Sbjct: 243 SATMSSKVESLQRASLRDPLKVSISSSKYQTVATLVQNYLFIPHM---HKDTYLIYLCNE 299
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+IIF+ T R+ IL + A LHG L+Q+ RL AL FR + L+AT
Sbjct: 300 FAGQTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSRNILVAT 359
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V V+N+ P+D +YVHRVGRTARAG+ G+A++ VT D + I
Sbjct: 360 DVAARGLDIPNVDCVLNFDLPQDSKTYVHRVGRTARAGKSGHAISIVTQYDIEIWLRIEA 419
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 401
G+KL + + + + +E+ + +++ +ER
Sbjct: 420 ALGTKLTEYALEKDEVMVFKPRVEEAQRHAKNEMKQLIDER 460
>gi|440486596|gb|ELQ66446.1| ATP-dependent rRNA helicase rrp3 [Magnaporthe oryzae P131]
Length = 538
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 166/368 (45%), Positives = 224/368 (60%), Gaps = 9/368 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + PL ACEAL + KPTPIQ IPLAL GRD+ G A TGSGKTAAFALP L+ LL
Sbjct: 114 DLGIVEPLCEACEALKFKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLL 173
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + L+L PTRELA Q+ E + +RC +VVGGL Q AL P
Sbjct: 174 EKPQPLFG---LVLAPTRELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSIALGKKPH 230
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IVVATPGR++DHL + L L L++DEADRLL+L F + ++++ P+ R+T LF
Sbjct: 231 IVVATPGRLLDHLEKTKGFSLRSLKFLVMDEADRLLDLDFGPILDKILKFLPRERRTFLF 290
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT++ V+ L + SL PL++S S ++ STL + + I +++ L+ L ++
Sbjct: 291 SATMSSKVESLQRASLRDPLKVSVSSSQEKTVSTLIQNPLFIPHK---HKDVYLIYLANE 347
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
I+F+ T A R+ IL + A LHG L+Q+ RL AL F+ + D L+AT
Sbjct: 348 FAGKTTIVFTRTVNEAQRVSILLRTLSFGAIPLHGQLSQSMRLGALNKFKARSRDILVAT 407
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V VIN+ P+D +Y+HRVGRTARAGR G A++ +T D L I K
Sbjct: 408 DVAARGLDIPEVDLVINFDMPQDSMTYIHRVGRTARAGRSGRAISIITQYDLELWLRIEK 467
Query: 361 RA--GSKL 366
A G KL
Sbjct: 468 AALNGRKL 475
>gi|325087574|gb|EGC40884.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus H88]
Length = 485
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 164/409 (40%), Positives = 238/409 (58%), Gaps = 5/409 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L ACEALGY PTPIQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+
Sbjct: 63 DLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALM 122
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + LIL PTRELA Q+ E + +RC ++VGG+ Q +L P
Sbjct: 123 NKPQSLFG---LILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISLGKKPH 179
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L +L L++DEADRLL+L F + +++++ P+ R+T LF
Sbjct: 180 IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYLF 239
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++ V+ L + SL+ PLR+S S+ + T+ + + ++ L+ L ++
Sbjct: 240 SATMSSKVESLQRASLSNPLRVSI--SSNKYQTVATLLQSYLFIPHKYKDVYLVYLLNEY 297
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
I+F+ T RL IL + LHG L+Q+ RL AL FR + D L+ATD
Sbjct: 298 AGQSAIVFTRTVNETQRLAILLRTLGFGSIPLHGQLSQSSRLGALSKFRSRSRDILVATD 357
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V V+N+ P D +Y+HRVGRTARAG+ G+A + VT D + I
Sbjct: 358 VAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDIEVWLRIENA 417
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEA 410
G KL V ++ + S + + + +++ E+R R A ++
Sbjct: 418 LGKKLDEYKVEKEEVMVLSDRVGEAQRHAITEMKDLHEKRGSRGATLKG 466
>gi|225556564|gb|EEH04852.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus G186AR]
Length = 485
Score = 299 bits (766), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 164/409 (40%), Positives = 238/409 (58%), Gaps = 5/409 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L ACEALGY PTPIQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+
Sbjct: 63 DLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALM 122
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + LIL PTRELA Q+ E + +RC ++VGG+ Q +L P
Sbjct: 123 NKPQSLFG---LILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISLGKKPH 179
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L +L L++DEADRLL+L F + +++++ P+ R+T LF
Sbjct: 180 IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYLF 239
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++ V+ L + SL+ PLR+S S+ + T+ + + ++ L+ L ++
Sbjct: 240 SATMSSKVESLQRASLSNPLRVSI--SSNKYQTVATLLQSYLFIPHKYKDVYLVYLLNEY 297
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
I+F+ T RL IL + LHG L+Q+ RL AL FR + D L+ATD
Sbjct: 298 AGQSAIVFTRTVNETQRLAILLRALGFGSIPLHGQLSQSSRLGALSKFRSRSRDILVATD 357
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V V+N+ P D +Y+HRVGRTARAG+ G+A + VT D + I
Sbjct: 358 VAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDIEVWLRIENA 417
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEA 410
G KL V ++ + S + + + +++ E+R R A ++
Sbjct: 418 LGKKLDEYKVEKEEVMVLSDRVGEAQRHAITEMKDLHEKRGSRGATLKG 466
>gi|341897829|gb|EGT53764.1| hypothetical protein CAEBREN_24102 [Caenorhabditis brenneri]
Length = 485
Score = 298 bits (762), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 146/335 (43%), Positives = 225/335 (67%), Gaps = 3/335 (0%)
Query: 104 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 163
+GGL K QE+ALRS PD+VVATPGR+IDHL NS + +L + VL+LDEADR+LE F
Sbjct: 1 MGGLDLKAQESALRSGPDVVVATPGRLIDHLHNSPNFNLGAIEVLVLDEADRMLEEAFRD 60
Query: 164 EIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR 223
+++EL+RLC + RQT+LFSAT+TE++DEL +SL KP+++ + + L +E +RIR
Sbjct: 61 QMNELIRLCAENRQTLLFSATMTEEIDELASMSLKKPVKIFINENTDTALKLRQEFIRIR 120
Query: 224 RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRL 283
RE ++E+++ +L ++TF + I+F TK+ R++IL GL +K ++ +LTQ QR+
Sbjct: 121 AGRESDRESIVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRI 180
Query: 284 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYA 343
E+L F+K +D L++TD+A+RGLDI GVQTVIN P+ + Y+HRVGRTARAG+ G +
Sbjct: 181 ESLSKFKKGEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRS 240
Query: 344 VTFVTDNDRSLLKAIAK-RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERI 402
++ V + +R LLK I A LK R+VA + + + + I+++E+ + I +E+R E+
Sbjct: 241 ISLVGEEERKLLKEIVNSNADRTLKQRLVAPEVVEAYRRRIDELEETIQQIDEEDRAEKE 300
Query: 403 LRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKE 437
LR AE K ++ + E +R W + E +
Sbjct: 301 LRIAEASMAKTQHALETGEA--GNERRVWMMKESQ 333
>gi|221062043|ref|XP_002262591.1| DEAD/DEAH box helicase (fragment) [Plasmodium knowlesi strain H]
gi|193811741|emb|CAQ42469.1| DEAD/DEAH box helicase, putative (fragment) [Plasmodium knowlesi
strain H]
Length = 555
Score = 298 bits (762), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 158/412 (38%), Positives = 240/412 (58%), Gaps = 34/412 (8%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L +SRP L+ + PT IQ IPLAL G+ I ++ TGSGKT AF LP LERLL
Sbjct: 143 DLYISRPFLKVLYEGKLNNPTFIQRDVIPLALEGKSILANSETGSGKTLAFVLPILERLL 202
Query: 62 ---------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 112
Y P+ I + LIL PTRELA+Q + +++ + ++ I L GG+ K Q
Sbjct: 203 HSPNIKMRSYNPRSICITKSLILLPTRELALQCYDVVKSMTKYVPITYSLFCGGIDVKQQ 262
Query: 113 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172
E + DI + TPGR++D L NS S ++ L V++ DEAD+LLELGF E +++ +C
Sbjct: 263 EHEYKKKKDIFICTPGRILDLLLNSSSDFINYLEVVVFDEADKLLELGFKEECLKVLDVC 322
Query: 173 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKR--------PSTLTEE-VVRIR 223
++Q + FSATLT D+ EL SL P+ + + ++ PS ++ + +++
Sbjct: 323 KFKKQILFFSATLTRDIKELANFSLKNPIFIQSGVDNRKVDSKGEIIPSCISNKKILKSF 382
Query: 224 RMRE-VNQE-----------AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAA 271
++ E +NQE A LL LCS + + IIF TK+ H + ++F L K A
Sbjct: 383 KISEKLNQEFVNIVNEKYRRAALLHLCSNVYKNHAIIFFKTKKETHLMYLIFSLFNFKCA 442
Query: 272 ELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRV 331
ELHG+LTQ +R+E++ F+K VDFL+ T++A+RGLDI + VINY P ++ YVHR+
Sbjct: 443 ELHGSLTQKKRIESILKFKKNEVDFLLCTELASRGLDIDHILYVINYNLPSNVIKYVHRI 502
Query: 332 GRTARAGREGYAVTFVTDNDRS----LLKAIAKRAGSKLKSRIVAEQSITKW 379
GRTAR G++G + T N+++ ++K + K +K+ R ++ SI W
Sbjct: 503 GRTARIGKDGTSSTLYRPNEKTDVKKIIKGLKKSKNAKIFRRNISNDSILHW 554
>gi|197116587|ref|YP_002137014.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
gi|197085947|gb|ACH37218.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
Length = 453
Score = 298 bits (762), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 160/370 (43%), Positives = 230/370 (62%), Gaps = 4/370 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
LNLS P+L+A +A GY++PTPIQA IPLAL+GRD+ GSA TG+GKTA+F LP LERLL
Sbjct: 6 LNLSAPILKAIQACGYTQPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPALERLLT 65
Query: 63 -RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P R R+L+LTPTRELA+QV + +F +RC ++GG+ + Q L D
Sbjct: 66 PSPLRGKGPRILVLTPTRELAIQVVDAVRSYGKFMRVRCGSILGGMPYRDQMMLLAQPVD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR+IDHL + S++ L +L+LDEADR+L++GFS ++ + P RQT+LF
Sbjct: 126 IIVATPGRLIDHL-DRRSINFSRLEMLVLDEADRMLDMGFSEDVDRIANAAPAERQTLLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
+AT+ + + +L + L P+R++ + + + + + MR N+ +L L S
Sbjct: 185 TATMDDAMAKLAQRLLKDPVRVAVEGTEVANLQIEQRLHVTDDMRHKNR--LLQHLVSDA 242
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+K IIFS TK+ A +L AA LHG+++Q R + + + R+ V L+ATD
Sbjct: 243 SVTKAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNKTITMMRRGKVRLLVATD 302
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLD+ G+ VINY P+ YVHR+GRT RAG G A++F + N+ L I +
Sbjct: 303 VAARGLDVTGISHVINYDLPKFAEDYVHRIGRTGRAGATGIAISFCSMNEVVYLDRIERF 362
Query: 362 AGSKLKSRIV 371
G KL +V
Sbjct: 363 TGKKLPMHVV 372
>gi|154284444|ref|XP_001543017.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1]
gi|160358658|sp|A6QRQ7.1|RRP3_AJECN RecName: Full=ATP-dependent rRNA helicase RRP3
gi|150406658|gb|EDN02199.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1]
Length = 485
Score = 298 bits (762), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 164/409 (40%), Positives = 237/409 (57%), Gaps = 5/409 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L ACEALGY PTPIQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+
Sbjct: 63 DLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALM 122
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + LIL PTRELA Q+ E + +RC ++VGG+ Q +L P
Sbjct: 123 NKPQSLFG---LILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISLGKKPH 179
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L L L++DEADRLL+L F + +++++ P+ R+T LF
Sbjct: 180 IIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYLF 239
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++ V+ L + SL+ PLR+S S+ + T+ + + ++ L+ L ++
Sbjct: 240 SATMSSKVESLQRASLSNPLRVSI--SSNKYQTVATLLQSYLFIPHKYKDIYLVYLLNEY 297
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
I+F+ T RL IL + LHG L+Q+ RL AL FR + D L+ATD
Sbjct: 298 AGQSAIVFTRTVNETQRLAILLRALGFGSIPLHGQLSQSSRLGALSKFRSRSRDILVATD 357
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V V+N+ P D +Y+HRVGRTARAG+ G+A + VT D + I
Sbjct: 358 VAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDIEVWLRIENA 417
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEA 410
G KL V ++ + S + + + +++ E+R R A ++
Sbjct: 418 LGKKLDEYKVEKEEVMVLSDRVGEAQRHAITEMKDLHEKRGSRGATLKG 466
>gi|226288804|gb|EEH44316.1| ATP-dependent rRNA helicase RRP3 [Paracoccidioides brasiliensis
Pb18]
Length = 482
Score = 297 bits (761), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 159/351 (45%), Positives = 217/351 (61%), Gaps = 7/351 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L ACEALGY PTPIQ IPLAL GRD+ G A TGSGKTAAFALP L+ L+
Sbjct: 60 DLGVIDSLCEACEALGYKTPTPIQTEAIPLALQGRDLIGLAETGSGKTAAFALPILQALM 119
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ ++ L+L PTRELA Q+ E + +RC ++VGG+ Q AL P
Sbjct: 120 DKPQ---SLFGLVLAPTRELAYQISEAFEALGSLISVRCAVIVGGMDMVPQAIALGKKPH 176
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L +L L++DEADRLL+L F + +++++ P+ R+T LF
Sbjct: 177 IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYLF 236
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT++ V+ L + SL+ PLR+S S + STL + + I ++ L+ L ++
Sbjct: 237 SATMSSKVESLQRASLSNPLRVSISSSKYQTVSTLLQTFLFIPHKY---KDIYLVYLLNE 293
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
IIF+ T RL IL A LHG L+Q+ RL AL FR + D L+AT
Sbjct: 294 FAGQSAIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSYRLGALGKFRSRSRDILVAT 353
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
DVAARGLDI V V+N+ P D +Y+HRVGRTARAG+ G+A +FVT D
Sbjct: 354 DVAARGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFSFVTQYD 404
>gi|342877843|gb|EGU79271.1| hypothetical protein FOXB_10221 [Fusarium oxysporum Fo5176]
Length = 485
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 164/401 (40%), Positives = 228/401 (56%), Gaps = 7/401 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L ACE L Y PTPIQ IP+AL GRDI G A TGSGKTAAFALP L+ LL
Sbjct: 64 DLGIVDALCEACEKLNYKYPTPIQEKSIPVALEGRDIIGLAETGSGKTAAFALPVLQALL 123
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + L+L PTRELA Q+ E + +RC ++VGGL Q AL P
Sbjct: 124 DKPQPLFG---LVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQAIALGKKPH 180
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL + L L LI+DEADRLL++ F I ++++ P+ R+T LF
Sbjct: 181 IIVATPGRLVDHLEKTKGFSLRTLKYLIMDEADRLLDMDFGPSIDKILKFIPRERRTYLF 240
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT++ ++ L + SL P+R+S + + STL + + I +R ++ L+ L ++
Sbjct: 241 SATISSKIESLQRASLRDPVRVSISSNKYQTVSTLLQHYIFIPHVR---KDVYLIYLINE 297
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
IIF+ T R+ IL A LHG L+Q RL AL FR D L+AT
Sbjct: 298 HVGKSTIIFTRTVWETQRISILLRTLGFGAIPLHGQLSQTSRLGALNKFRSGTRDILVAT 357
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V V+NY P+D +Y+HRVGRTARAG+ G A++ VT D + I
Sbjct: 358 DVAARGLDIPSVDVVLNYDLPQDSKTYIHRVGRTARAGKSGIAISVVTQYDVEIFTRIEA 417
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 401
G KL ++ + + +E+ + ++ EER
Sbjct: 418 ALGKKLTEYPTEKEEVFTFQTRVEEAQRHARVEMKSFTEER 458
>gi|121702529|ref|XP_001269529.1| ATP-dependent RNA helicase , putative [Aspergillus clavatus NRRL 1]
gi|143462228|sp|A1CR32.1|RRP3_ASPCL RecName: Full=ATP-dependent rRNA helicase rrp3
gi|119397672|gb|EAW08103.1| ATP-dependent RNA helicase , putative [Aspergillus clavatus NRRL 1]
Length = 473
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 156/365 (42%), Positives = 219/365 (60%), Gaps = 5/365 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L AC +GY PTPIQA IPLAL RD+ G A TGSGKTAAFALP L+ L+
Sbjct: 57 DLGIIDQLCEACATMGYKAPTPIQAESIPLALQDRDLIGLAETGSGKTAAFALPILQALM 116
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ L+L PTRELA Q+ E + ++RC ++VGG+ Q AL P
Sbjct: 117 DKPQSFFG---LVLAPTRELAFQISQSFEALGSTINVRCAVIVGGMDMVSQSIALGKKPH 173
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L L L++DEADRLL++ F + +++++ P+ R+T LF
Sbjct: 174 IIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKILPRERRTFLF 233
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++ V+ L + SL+ PLR+S S+ + T++ + R + +++ L+ L ++
Sbjct: 234 SATMSSKVESLQRASLSNPLRVSV--SSNKYQTVSTLLQSYRFIPHKHKDIYLVYLLNEF 291
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
IIF+ T R+ L A LHG L+Q+ RL AL FR + D L+ATD
Sbjct: 292 VGQSAIIFTRTVHETQRISFLLRALGFGAIPLHGQLSQSSRLGALGKFRSRSRDILVATD 351
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V V+N+ P D +YVHRVGRTARAG+ G A++FVT D + I
Sbjct: 352 VAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRIEGA 411
Query: 362 AGSKL 366
G KL
Sbjct: 412 LGKKL 416
>gi|440475921|gb|ELQ44569.1| ATP-dependent rRNA helicase rrp3 [Magnaporthe oryzae Y34]
Length = 906
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 166/368 (45%), Positives = 224/368 (60%), Gaps = 9/368 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + PL ACEAL + KPTPIQ IPLAL GRD+ G A TGSGKTAAFALP L+ LL
Sbjct: 114 DLGIVEPLCEACEALKFKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLL 173
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + L+L PTRELA Q+ E + +RC +VVGGL Q AL P
Sbjct: 174 EKPQ---PLFGLVLAPTRELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSIALGKKPH 230
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IVVATPGR++DHL + L L L++DEADRLL+L F + ++++ P+ R+T LF
Sbjct: 231 IVVATPGRLLDHLEKTKGFSLRSLKFLVMDEADRLLDLDFGPILDKILKFLPRERRTFLF 290
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT++ V+ L + SL PL++S S ++ STL + + I +++ L+ L ++
Sbjct: 291 SATMSSKVESLQRASLRDPLKVSVSSSQEKTVSTLIQNPLFIPHK---HKDVYLIYLANE 347
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
I+F+ T A R+ IL + A LHG L+Q+ RL AL F+ + D L+AT
Sbjct: 348 FAGKTTIVFTRTVNEAQRVSILLRTLSFGAIPLHGQLSQSMRLGALNKFKARSRDILVAT 407
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V VIN+ P+D +Y+HRVGRTARAGR G A++ +T D L I K
Sbjct: 408 DVAARGLDIPEVDLVINFDMPQDSMTYIHRVGRTARAGRSGRAISIITQYDLELWLRIEK 467
Query: 361 RA--GSKL 366
A G KL
Sbjct: 468 AALNGRKL 475
>gi|156052799|ref|XP_001592326.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|160358660|sp|A7EML8.1|RRP3_SCLS1 RecName: Full=ATP-dependent rRNA helicase rrp3
gi|154704345|gb|EDO04084.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 482
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 159/365 (43%), Positives = 220/365 (60%), Gaps = 7/365 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L AC+ LGY PTPIQ IPLAL GRD+ G A TGSGKTAAFALP L+ LL
Sbjct: 60 DLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQSLL 119
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + L+L PTRELA Q+ E + ++C ++VGG+ Q AL P
Sbjct: 120 DKPQPLFG---LVLAPTRELAYQISQSFEALGSIIRVKCAVIVGGMDMVPQAIALGKKPH 176
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L L L++DEADRLL+L F + +++++ P+ R+T LF
Sbjct: 177 IIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYLF 236
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT++ V+ L + SL PLR+S + + STL + + I V+++ L+ L ++
Sbjct: 237 SATISSKVESLQRASLKDPLRVSISSNKYQTVSTLIQNYIFIPL---VHKDTYLIYLLNE 293
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
IIF+ T R+ IL A LHG L+Q+ RL AL FR + L+AT
Sbjct: 294 FAGQSAIIFTRTVNETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGSREILVAT 353
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V V+NY P+D +Y+HRVGRTARAG+ G+A++FVT D + I
Sbjct: 354 DVAARGLDIPSVDVVLNYDMPQDSKTYIHRVGRTARAGKSGHAISFVTQYDVEIWMRIEA 413
Query: 361 RAGSK 365
G K
Sbjct: 414 ALGKK 418
>gi|239606948|gb|EEQ83935.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis ER-3]
gi|327350595|gb|EGE79452.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis ATCC
18188]
Length = 482
Score = 296 bits (757), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 159/351 (45%), Positives = 215/351 (61%), Gaps = 7/351 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L ACE LGY PTPIQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+
Sbjct: 60 DLGIIDSLCEACETLGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALM 119
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ ++ LIL PTRELA Q+ E + +RC ++VGG+ Q AL P
Sbjct: 120 EKPQ---SLFGLILAPTRELAYQISGAFEALGSLISVRCAVIVGGMDMVPQAIALGKKPH 176
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IVVATPGR++DHL N+ L +L L++DEADRLL+L F + +++++ P+ R+T LF
Sbjct: 177 IVVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYLF 236
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT++ V+ L + SL+ PLR+S S + STL + + I ++ L+ L ++
Sbjct: 237 SATMSSKVESLQRASLSNPLRVSISSSKYQTVSTLLQSYLFIPHK---YKDLYLVYLLNE 293
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
I+F+ T RL IL A LHG L+Q+ RL AL FR + D L+AT
Sbjct: 294 YAGQSAIVFTRTVNETQRLAILLRALGFGAIPLHGQLSQSSRLGALSKFRSRSRDILVAT 353
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
DVAARGLDI V V+N+ P D +Y+HRVGRTARAG+ G+A VT D
Sbjct: 354 DVAARGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFNIVTQYD 404
>gi|67527984|ref|XP_661837.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4]
gi|74681080|sp|Q5B5E7.1|RRP3_EMENI RecName: Full=ATP-dependent rRNA helicase rrp3
gi|40740142|gb|EAA59332.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4]
gi|259481158|tpe|CBF74430.1| TPA: ATP-dependent rRNA helicase rrp3 (EC 3.6.1.-)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B5E7] [Aspergillus
nidulans FGSC A4]
Length = 465
Score = 296 bits (757), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 153/350 (43%), Positives = 209/350 (59%), Gaps = 6/350 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL + L ACE +GY PTPIQ+ IPLAL GRD+ G A TGSGKTAAFALP L+ L+
Sbjct: 50 ELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALM 109
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ + L+L PTRELA Q+ E + +RC ++VGG+ Q AL P
Sbjct: 110 EAPQTLFG---LVLAPTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGKKPH 166
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L +L L +DEADRLL++ F + +++R+ P+ R T LF
Sbjct: 167 IIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPRTRHTYLF 226
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++ V+ L + SL+ P+R+S + STL + I ++ L+ L ++
Sbjct: 227 SATMSTKVESLQRASLSNPVRVSVSSKYQTVSTLQSSYICIPHK---HKNLYLVYLLNEF 283
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
IIF+ T R+ + A LHG L+Q+ RL AL FR + D L+ATD
Sbjct: 284 AGQSAIIFTTTVHETQRVAFMLRALGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATD 343
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
VAARGLDI V V N+ P D +Y+HRVGRTARAG+ G A++FVT D
Sbjct: 344 VAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQYD 393
>gi|340960548|gb|EGS21729.1| ATP-dependent rRNA helicase rrp3-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 492
Score = 296 bits (757), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 155/351 (44%), Positives = 218/351 (62%), Gaps = 7/351 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L ACE LGY +PTPIQ IPLAL RD+ G A TGSGKTAAFALP L+ LL
Sbjct: 74 DLGIVESLCEACERLGYKRPTPIQEQAIPLALQNRDLIGIAETGSGKTAAFALPILQALL 133
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + A L+L PTRELA Q+ E + +RC L++GGL Q AL P
Sbjct: 134 DKPQPLFA---LVLAPTRELAAQIAQAFEALGSMISLRCALILGGLDMVQQAIALGKKPH 190
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++DHL + L +L L++DEADRLL++ F + ++++ P+ R+T LF
Sbjct: 191 VIVATPGRLLDHLEKTKGFSLRNLKYLVMDEADRLLDMDFGPILEKILKFLPRERRTFLF 250
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT++ V+ L + SL PL++S S + STL + + I ++++ L+ L ++
Sbjct: 251 SATMSSKVESLQRASLRDPLKVSISTSKYQTVSTLVQHYIFIPH---IHKDTYLIYLVNE 307
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+IIF+ T R+ IL + A LHG L+Q+ RL AL FR + L+AT
Sbjct: 308 FAGKTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSRNILVAT 367
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
DVAARGLDI V V+N+ P+D +YVHRVGRTARAG+ G+A++FVT D
Sbjct: 368 DVAARGLDIPNVDCVLNFDLPQDSKTYVHRVGRTARAGKSGHAISFVTQYD 418
>gi|253698823|ref|YP_003020012.1| DEAD/DEAH box helicase [Geobacter sp. M21]
gi|251773673|gb|ACT16254.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21]
Length = 449
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 160/370 (43%), Positives = 230/370 (62%), Gaps = 4/370 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
LNLS P+L+A +A GY++PTPIQA IPLAL+GRD+ GSA TG+GKTA+F LP LERLL
Sbjct: 6 LNLSAPILKAIQACGYTQPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPALERLLT 65
Query: 63 -RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P R R+L+LTPTRELA+QV + +F +RC ++GG+ + Q L D
Sbjct: 66 PSPLRGKGPRILVLTPTRELAIQVVDAVRSYGKFMRVRCGSILGGMPYRDQMMLLAQPVD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR+IDHL + S++ L +L+LDEADR+L++GFS ++ + P RQT+LF
Sbjct: 126 IIVATPGRLIDHL-DRRSINFSRLEMLVLDEADRMLDMGFSDDVDRIADAAPAERQTLLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
+AT+ + + +L + L P+R++ + + + + + MR N+ +L L S
Sbjct: 185 TATMDDAMAKLAQRLLKDPVRVAVEGTEVANLQIEQRLHVTDDMRHKNR--LLQHLVSDA 242
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+K IIFS TK+ A +L AA LHG+++Q R + + R+ V L+ATD
Sbjct: 243 SVTKAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNKTITNMRRGKVRLLVATD 302
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLD+ G+ VINY P+ YVHR+GRT RAG G A++F + N+ + L I +
Sbjct: 303 VAARGLDVTGISHVINYDLPKFAEDYVHRIGRTGRAGATGIAISFCSMNEVAYLDRIERF 362
Query: 362 AGSKLKSRIV 371
G KL +V
Sbjct: 363 TGKKLPMHVV 372
>gi|116195380|ref|XP_001223502.1| hypothetical protein CHGG_04288 [Chaetomium globosum CBS 148.51]
gi|118595827|sp|Q2H1Q8.1|RRP3_CHAGB RecName: Full=ATP-dependent rRNA helicase RRP3
gi|88180201|gb|EAQ87669.1| hypothetical protein CHGG_04288 [Chaetomium globosum CBS 148.51]
Length = 493
Score = 295 bits (755), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 163/366 (44%), Positives = 220/366 (60%), Gaps = 7/366 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L AC+ LG+ KPTPIQ IPLAL RDI G A TGSGKT AFALP L+ LL
Sbjct: 69 DLGIVDSLCDACKELGWKKPTPIQQESIPLALQDRDIIGLAETGSGKTGAFALPILQALL 128
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + A L+L PTRELA Q+ E + +RC L++GGL Q AL P
Sbjct: 129 DKPQPLFA---LVLAPTRELAAQIAQSFEALGSLISLRCALILGGLDMVQQAIALGKKPH 185
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+VVATPGR++DHL + L +L L++DEADRLL++ F + ++++ P+ R+T LF
Sbjct: 186 VVVATPGRLLDHLEKTKGFSLRNLRYLVMDEADRLLDMDFGPILDKILKFLPRERRTFLF 245
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT++ V+ L + L PL++S S + STL + V I +++ L+ LC++
Sbjct: 246 SATMSSKVESLQRACLRDPLKVSISSSKYQTVSTLVQNYVFI---PHTHKDTYLIYLCNE 302
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+IIF+ T R+ IL + A LHG L+Q+ RL AL FR D L+AT
Sbjct: 303 FAGQTIIIFTRTVIETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSRDILVAT 362
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V V+N P D +YVHRVGRTARAGR G+A++FVT D L I
Sbjct: 363 DVAARGLDIPNVDCVLNLDLPGDSKTYVHRVGRTARAGRSGHAISFVTQYDLELWLRIEA 422
Query: 361 RAGSKL 366
G+KL
Sbjct: 423 ALGTKL 428
>gi|303317380|ref|XP_003068692.1| ATP-dependent rRNA helicase RRP3, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240108373|gb|EER26547.1| ATP-dependent rRNA helicase RRP3, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 474
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 163/400 (40%), Positives = 234/400 (58%), Gaps = 5/400 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L AC++LGY PT IQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+
Sbjct: 52 DLGIIDSLCEACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALM 111
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + L+L PTRELA Q+ E + +RC ++VGG+ Q AL P
Sbjct: 112 DKPQSMFG---LVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGKKPH 168
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L L L++DEADRLL+L F + +++++ PK R+T LF
Sbjct: 169 IIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPKERRTYLF 228
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++ V+ L + SL+ PLR+S S+ + T++ + + +++ L+ L ++
Sbjct: 229 SATMSSKVESLQRASLSNPLRVSV--SSNKYQTVSTLLQNCLIIPHKHKDIYLIYLLNEF 286
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
VIIF+ T RL IL A LHG L+Q+ RL AL FR + + L+ATD
Sbjct: 287 PGQSVIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILVATD 346
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V V+NY P D +Y+HRVGRTARAG+ G A + VT D + + I
Sbjct: 347 VAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQYDVEIWQRIEAA 406
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 401
G +L V ++ + S + + + ++E E R
Sbjct: 407 LGKELDEYKVEKEEVMVLSDRVGEAQRHAITEMKELHENR 446
>gi|119186961|ref|XP_001244087.1| hypothetical protein CIMG_03528 [Coccidioides immitis RS]
gi|118595828|sp|Q1E1N5.1|RRP3_COCIM RecName: Full=ATP-dependent rRNA helicase RRP3
gi|392870806|gb|EAS32639.2| ATP-dependent rRNA helicase RRP3 [Coccidioides immitis RS]
Length = 474
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 163/400 (40%), Positives = 234/400 (58%), Gaps = 5/400 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L AC++LGY PT IQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+
Sbjct: 52 DLGIIDSLCEACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALM 111
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + L+L PTRELA Q+ E + +RC ++VGG+ Q AL P
Sbjct: 112 DKPQSMFG---LVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGKKPH 168
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L L L++DEADRLL+L F + +++++ PK R+T LF
Sbjct: 169 IIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPKERRTYLF 228
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++ V+ L + SL+ PLR+S S+ + T++ + + +++ L+ L ++
Sbjct: 229 SATMSSKVESLQRASLSNPLRVSV--SSNKYQTVSTLLQNCLIIPHKHKDIYLIYLLNEF 286
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
VIIF+ T RL IL A LHG L+Q+ RL AL FR + + L+ATD
Sbjct: 287 PGQSVIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILVATD 346
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V V+NY P D +Y+HRVGRTARAG+ G A + VT D + + I
Sbjct: 347 VAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQYDVEIWQRIEAA 406
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 401
G +L V ++ + S + + + ++E E R
Sbjct: 407 LGKELDEYKVEKEEVMVLSDRVGEAQRHAITEMKELHENR 446
>gi|350630756|gb|EHA19128.1| hypothetical protein ASPNIDRAFT_54204 [Aspergillus niger ATCC 1015]
Length = 467
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 160/367 (43%), Positives = 220/367 (59%), Gaps = 7/367 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL + L ACE +GY PTPIQ IPLAL GRD+ G A TGSGKTAAFALP L+ L+
Sbjct: 52 ELGIIEQLCEACETMGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQALM 111
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ L+L PTRELA Q+ E + +R C++VGG+ Q +L P
Sbjct: 112 EKPQPFFG---LVLAPTRELAYQISKSFESLGASMGVRSCVIVGGMDMVSQSISLGKKPH 168
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L +L L++DEADRLL++ F + +++++ P+ R+T LF
Sbjct: 169 IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFLF 228
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT++ V+ L + SL+ PLR+S S + STL + + I + +++ L+ L ++
Sbjct: 229 SATMSSKVESLQRASLSNPLRVSVSTSKYQTVSTLLQSYLFI---PQKHKDLYLVYLLNE 285
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
IIF+ T RL L A LHG L+Q+ RL AL FR + + L+AT
Sbjct: 286 FAGQSTIIFTRTVNETQRLAFLLRALGFGAIPLHGQLSQSARLGALGKFRARSRNILVAT 345
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V V+N+ P D SYVHRVGRTARAG+ G A++FV D + I
Sbjct: 346 DVAARGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVAQYDVEVWLRIEG 405
Query: 361 RAGSKLK 367
G KLK
Sbjct: 406 ALGKKLK 412
>gi|145255454|ref|XP_001398969.1| ATP-dependent rRNA helicase RRP3 [Aspergillus niger CBS 513.88]
gi|143462251|sp|A2RB17.1|RRP3_ASPNC RecName: Full=ATP-dependent rRNA helicase rrp3
gi|134084560|emb|CAK43313.1| unnamed protein product [Aspergillus niger]
Length = 467
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 160/367 (43%), Positives = 220/367 (59%), Gaps = 7/367 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL + L ACE +GY PTPIQ IPLAL GRD+ G A TGSGKTAAFALP L+ L+
Sbjct: 52 ELGIIEQLCEACETMGYKAPTPIQRESIPLALKGRDLIGLAETGSGKTAAFALPILQALM 111
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ L+L PTRELA Q+ E + +R C++VGG+ Q +L P
Sbjct: 112 EKPQPFFG---LVLAPTRELAYQISKSFESLGASMGVRSCVIVGGMDMVSQSISLGKKPH 168
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L +L L++DEADRLL++ F + +++++ P+ R+T LF
Sbjct: 169 IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFLF 228
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT++ V+ L + SL+ PLR+S S + STL + + I + +++ L+ L ++
Sbjct: 229 SATMSSKVESLQRASLSNPLRVSVSTSKYQTVSTLLQSYLFI---PQKHKDLYLVYLLNE 285
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
IIF+ T RL L A LHG L+Q+ RL AL FR + + L+AT
Sbjct: 286 FAGQSTIIFTRTVNETQRLAFLLRALGFGAIPLHGQLSQSARLGALGKFRARSRNILVAT 345
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V V+N+ P D SYVHRVGRTARAG+ G A++FV D + I
Sbjct: 346 DVAARGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVAQYDVEVWLRIEG 405
Query: 361 RAGSKLK 367
G KLK
Sbjct: 406 ALGKKLK 412
>gi|340522166|gb|EGR52399.1| predicted protein [Trichoderma reesei QM6a]
Length = 482
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 166/409 (40%), Positives = 234/409 (57%), Gaps = 17/409 (4%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL + L ACE+L Y +PT IQA IP+AL GRD+ G A TGSGKTAAFALP L+ LL
Sbjct: 62 ELGIVDSLCEACESLNYKRPTAIQAKAIPVALQGRDVIGLAETGSGKTAAFALPILQALL 121
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + L+L PTRELA Q+ E + +RC ++VGGL Q AL P
Sbjct: 122 EKPQPLFG---LVLAPTRELAAQIGQSFEALGALISLRCAVIVGGLDMVPQAIALGKKPH 178
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL + L L L++DEADRLL++ F I ++++ P+ R+T LF
Sbjct: 179 IIVATPGRLVDHLEKTKGFSLRSLKYLVMDEADRLLDMDFGPSIDKILKFIPRERRTYLF 238
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSK 240
SATL+ V+ L + SL P+R+S S + STL + + + R ++ L+ L ++
Sbjct: 239 SATLSSKVESLQRASLRDPVRVSVSSSKYQTVSTLLQHYILVPHKR---KDTYLIYLVNE 295
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+IIF+ T R+ IL A LHG L+Q+ RL AL F+ + L+AT
Sbjct: 296 FAGKSIIIFTRTVFETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFKGGSREILVAT 355
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V V+N P+D +Y+HRVGRTARAG+ G A+ VT D + + I
Sbjct: 356 DVAARGLDIPAVDVVLNLDLPQDSKTYIHRVGRTARAGKSGIAINIVTQYDVEIYQRIEA 415
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 409
G KL + ++ + + +E+ +RE RI KA +E
Sbjct: 416 ALGKKLDAYPTEKEEVMAFQSRVEEA----------QREARIEMKAFLE 454
>gi|336471127|gb|EGO59288.1| ATP-dependent rRNA helicase rrp-3 [Neurospora tetrasperma FGSC
2508]
gi|350292214|gb|EGZ73409.1| ATP-dependent rRNA helicase rrp-3 [Neurospora tetrasperma FGSC
2509]
Length = 515
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 161/387 (41%), Positives = 226/387 (58%), Gaps = 7/387 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L ACE LGY PTPIQ IPLAL RDI G A TGSGKTAAFALP L+ LL
Sbjct: 94 DLGIVDALCEACERLGYKNPTPIQEQSIPLALQNRDIIGIAETGSGKTAAFALPILQALL 153
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P + A L+L PTRELA Q+ E + +RC L++GG+ Q AL P
Sbjct: 154 DKPAPLFA---LVLAPTRELAAQIAQAFEALGSLISLRCALILGGMDMVTQAIALGKKPH 210
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++DHL + L + L++DEADRLL++ F + ++++ P+ R+T LF
Sbjct: 211 VIVATPGRLLDHLEKTKGFSLRSMQYLVMDEADRLLDMDFGPILEKILKFLPRERRTFLF 270
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT++ V+ L + SL PL++S + STL V I M +++ L+ LC++
Sbjct: 271 SATMSSKVESLQRASLRDPLKVSVSSNKYATVSTLKSNYVFIPHM---HKDTYLVYLCNE 327
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+IIF+ T R+ IL + A LHG L+Q+ RL AL FR + L+AT
Sbjct: 328 FAGQTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSREILVAT 387
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V VIN+ P+D +YVHRVGRTARAG+ G+A++ VT D + I
Sbjct: 388 DVAARGLDIPNVDCVINHDLPQDSKTYVHRVGRTARAGKSGHAISIVTQYDLEIWLRIEA 447
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQME 387
G KL + + + + +E+ +
Sbjct: 448 ALGHKLDEYPLEKDEVMVFKPRVEEAQ 474
>gi|85082449|ref|XP_956915.1| ATP-dependent rRNA helicase RRP3 [Neurospora crassa OR74A]
gi|74662479|sp|Q7RY59.1|RRP3_NEUCR RecName: Full=ATP-dependent rRNA helicase rrp-3
gi|28917996|gb|EAA27679.1| ATP-dependent rRNA helicase RRP3 [Neurospora crassa OR74A]
Length = 515
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 161/387 (41%), Positives = 226/387 (58%), Gaps = 7/387 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L ACE LGY PTPIQ IPLAL RDI G A TGSGKTAAFALP L+ LL
Sbjct: 94 DLGIVDALCEACERLGYKNPTPIQEQSIPLALQNRDIIGIAETGSGKTAAFALPILQALL 153
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P + A L+L PTRELA Q+ E + +RC L++GG+ Q AL P
Sbjct: 154 DKPAPLFA---LVLAPTRELAAQIAQAFEALGSLISLRCALILGGMDMVTQAIALGKKPH 210
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++DHL + L + L++DEADRLL++ F + ++++ P+ R+T LF
Sbjct: 211 VIVATPGRLLDHLEKTKGFSLRSMQYLVMDEADRLLDMDFGPILEKILKFLPRERRTFLF 270
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT++ V+ L + SL PL++S + STL V I M +++ L+ LC++
Sbjct: 271 SATMSSKVESLQRASLRDPLKVSVSSNKYATVSTLKSNYVFIPHM---HKDTYLVYLCNE 327
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+IIF+ T R+ IL + A LHG L+Q+ RL AL FR + L+AT
Sbjct: 328 FAGQTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSREILVAT 387
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V VIN+ P+D +YVHRVGRTARAG+ G+A++ VT D + I
Sbjct: 388 DVAARGLDIPNVDCVINHDLPQDSKTYVHRVGRTARAGKSGHAISIVTQYDLEIWLRIEA 447
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQME 387
G KL + + + + +E+ +
Sbjct: 448 ALGHKLDEYPLEKDEVMVFKPRVEEAQ 474
>gi|322696755|gb|EFY88543.1| ATP-dependent rRNA helicase RRP3 [Metarhizium acridum CQMa 102]
Length = 478
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 162/366 (44%), Positives = 219/366 (59%), Gaps = 7/366 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L ACE+L Y PTPIQ IP+AL RDI G A TGSGKTAAFALP L+ LL
Sbjct: 61 QLGIVDSLCEACESLNYKFPTPIQEKSIPVALQNRDIIGLAETGSGKTAAFALPILQALL 120
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + L+L PTRELA Q+ E + +RC ++VGGL Q AL P
Sbjct: 121 DKPQPLFG---LVLAPTRELAHQIGQSFEALGSSISLRCAVIVGGLDMVPQAVALGKKPH 177
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL + L L L++DEADRLL++ F I +L++ P+ R+T LF
Sbjct: 178 IIVATPGRLVDHLEKTKGFSLRTLKYLVMDEADRLLDMDFGPAIDKLLKFIPRERRTYLF 237
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSK 240
SATL+ V+ L + SL P+R+S + + STL + ++ I +MR ++ L+ L ++
Sbjct: 238 SATLSSKVESLQRASLRDPVRVSVSSNKYQTVSTLLQNLLVIPQMR---KDTYLIYLVNE 294
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
IIF+ T R+ IL A LHG L+Q+ RL AL FR D L+AT
Sbjct: 295 FTGKSTIIFTRTVWETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFRSGTRDILVAT 354
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V V+NY P+D +Y+HRVGRTARAG+ G A++ VT D + + I
Sbjct: 355 DVAARGLDISKVDVVLNYDLPQDSKTYIHRVGRTARAGKSGIAISLVTQYDIEVFQRIEA 414
Query: 361 RAGSKL 366
G KL
Sbjct: 415 ALGKKL 420
>gi|358373394|dbj|GAA89992.1| ATP-dependent RNA helicase [Aspergillus kawachii IFO 4308]
Length = 471
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 161/367 (43%), Positives = 220/367 (59%), Gaps = 7/367 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL + L ACE +GY PTPIQ IPLAL GRD+ G A TGSGKTAAFALP L+ L+
Sbjct: 56 ELGIIEQLCEACETMGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQALM 115
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ LIL PTRELA Q+ E + +R C++VGG+ Q +L P
Sbjct: 116 EKPQPFFG---LILAPTRELAYQISKSFESLGASLGVRSCVIVGGMDMVSQSISLGKKPH 172
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L +L L++DEADRLL++ F + +++++ P+ R+T LF
Sbjct: 173 IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFLF 232
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT++ V+ L + SL+ PLR+S S + STL + + I + +++ L+ L ++
Sbjct: 233 SATMSSKVESLQRASLSNPLRVSVSTSKYQTVSTLLQSYLFI---PQKHKDLYLVYLLNE 289
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
IIF+ T RL L A LHG L+Q+ RL AL FR + + L+AT
Sbjct: 290 FAGQSTIIFTRTVNETQRLAFLLRALGFGAIPLHGQLSQSARLGALGKFRARSRNILVAT 349
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V V+N+ P D SYVHRVGRTARAG+ G A++FV D + I
Sbjct: 350 DVAARGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVAQYDVEVWLRIEG 409
Query: 361 RAGSKLK 367
G KLK
Sbjct: 410 ALGKKLK 416
>gi|302886563|ref|XP_003042171.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256723080|gb|EEU36458.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 490
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 168/416 (40%), Positives = 235/416 (56%), Gaps = 15/416 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L ACEAL Y PTPIQ IP+AL GRDI G A TGSGKTAAFALP L+ LL
Sbjct: 69 DLGVNDALCEACEALNYKYPTPIQEKSIPVALQGRDIIGLAETGSGKTAAFALPVLQALL 128
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + L+L PTRELA Q+ E + +RC ++VGGL Q AL P
Sbjct: 129 DKPQPLFG---LVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQAIALGKKPH 185
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL + L L LI+DEADRLL++ F I ++++ P+ R+T LF
Sbjct: 186 IIVATPGRLVDHLEKTKGFSLRTLKYLIMDEADRLLDMDFGPSIDKILKFIPRERRTYLF 245
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SATL+ ++ L + SL P+R+S S+ + T++ + + ++ L+ L ++
Sbjct: 246 SATLSSKIESLQRASLRDPVRVSI--SSNKYQTVSTLIQHYMFIPFPQKDTYLVYLVNEH 303
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
I+F+ T R+ IL A LHG L+Q+ RL AL FR D L+ATD
Sbjct: 304 TGKSTIVFTRTVWETQRVAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGTRDILVATD 363
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V V+NY P+D +Y+HRVGRTARAG+ G A+ VT D + I
Sbjct: 364 VAARGLDIPKVDVVLNYDMPQDSKTYIHRVGRTARAGKSGVAINLVTQYDLEIYARIEAA 423
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 417
G KL T++ E++ + I + +R RI K+ EA ++ I
Sbjct: 424 LGKKL----------TEYPSEKEEVMTFQSRIQEAQRHARIEMKSMSEAKGSKGTI 469
>gi|378727302|gb|EHY53761.1| ATP-dependent rRNA helicase RRP3 [Exophiala dermatitidis
NIH/UT8656]
Length = 480
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 161/401 (40%), Positives = 237/401 (59%), Gaps = 6/401 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL + L ACE+LGY PTPIQA IPLAL GRD+ G A TGSGKTAAF LP L+ L+
Sbjct: 55 ELGIIDSLCEACESLGYKAPTPIQAEAIPLALQGRDLIGLAETGSGKTAAFVLPILQALM 114
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+++ + LIL PTRELA Q+ +E + +RC ++VGG+ Q AL P
Sbjct: 115 DKPQQLHS---LILAPTRELAYQISEAVEALGSLIAVRCAVLVGGMDMITQAIALGKKPH 171
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR-RQTML 180
++VATPGR++DHL N+ L L L++DEADRLL+L F + +++++ P+ R+T L
Sbjct: 172 VIVATPGRLLDHLENTKGFSLRQLKYLVMDEADRLLDLDFGPILDKILKILPREGRKTYL 231
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT++ V+ L + SL+ PLR++ S + T++ + + +++ L+ + ++
Sbjct: 232 FSATMSSKVESLQRASLSNPLRVAV--SQDKYQTVSTLIQSYLFIPHKHKDLYLIHILNE 289
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
IIF+ T A R+ IL A +HG L+Q RL AL FR + + L+A+
Sbjct: 290 HAGHTGIIFTRTVNEAQRVSILLRTLGFSAIPIHGQLSQQARLAALNKFRAKSRNLLVAS 349
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V VIN+ P+D +Y+HRVGRTARAG+ G A++FVT D L I
Sbjct: 350 DVAARGLDIPSVDLVINFDLPQDSKTYIHRVGRTARAGKSGLAISFVTQYDVELWLRIEG 409
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 401
G KL ++ + ++ + + A ++E E R
Sbjct: 410 ALGKKLDEYKTVKEEVMVLAERVGDAQRAAALEMKELHENR 450
>gi|258563612|ref|XP_002582551.1| ATP-dependent rRNA helicase RRP3 [Uncinocarpus reesii 1704]
gi|237908058|gb|EEP82459.1| ATP-dependent rRNA helicase RRP3 [Uncinocarpus reesii 1704]
Length = 472
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 162/414 (39%), Positives = 236/414 (57%), Gaps = 5/414 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L ACE+LGY PT IQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+
Sbjct: 50 DLGVIDSLCEACESLGYKAPTQIQAESIPLALQGRDVIGLAETGSGKTAAFALPILQALM 109
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + L+L PTRELA Q+ +E + +RC ++VGG+ Q AL P
Sbjct: 110 DKPQSMFG---LVLAPTRELAYQISEQVEALGSLISVRCAVIVGGMDMVSQAIALGKKPH 166
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L +L L++DEADRLL+L F + +++++ PK R+T LF
Sbjct: 167 IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPKERRTYLF 226
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++ V+ L + SL+ PLR+S S+ + T+ + + ++ + L ++
Sbjct: 227 SATMSSKVESLQRASLSNPLRVSI--SSNKYQTVATLLQNYLFIPHKYKDIYFVYLLNEF 284
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
VI+F+ T RL IL A LHG L+Q+ RL AL FR + + L+ATD
Sbjct: 285 PGQSVIVFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILVATD 344
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V V+NY P D +Y+HRVGRTARAG+ G+A + VT D + + I
Sbjct: 345 VAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGHAFSLVTQFDIEIWQRIEGA 404
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAEN 415
G ++ + S + + + ++E E R + A + + N
Sbjct: 405 LGKTFDEYKTEKEEVMVLSDRVSEAQRHAITEMKELHENRGKKGATLRNRRTGN 458
>gi|167523499|ref|XP_001746086.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775357|gb|EDQ88981.1| predicted protein [Monosiga brevicollis MX1]
Length = 654
Score = 293 bits (749), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 166/437 (37%), Positives = 243/437 (55%), Gaps = 81/437 (18%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L LSR LL+ +G+++PT +Q+ IP+AL GRDIC A TGSGKTAAF LP LERLL
Sbjct: 149 DLQLSRVLLKGIANMGFAEPTLVQSTTIPVALAGRDICACAATGSGKTAAFMLPVLERLL 208
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+RPK+I RVL+L+PTRELAVQV +A+FTDI + VG
Sbjct: 209 FRPKQIAQTRVLVLSPTRELAVQVCQAARGLARFTDITFGMAVG---------------- 252
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
D + + +++ L+ L +D ++ + + E +R+ P+
Sbjct: 253 ----------DEVEDLITLSLNQPIRLFVDANKKVT----NNLVQEFIRIRPQH------ 292
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
ED E I LSL K +T
Sbjct: 293 -----EDQREAIVLSLCK----------------------------------------RT 307
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ S+ ++F +K+ AHRL+I+FGLA L+A ELHG+LTQAQRL ALE F+ ++FLI +D
Sbjct: 308 YKSRCLVFVRSKKHAHRLRIIFGLADLRAGELHGSLTQAQRLNALEQFKNGELEFLICSD 367
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+A RGLDI GV++VIN + P + Y+HRVGRTAR G G A T V +++R LL+ + +
Sbjct: 368 LAGRGLDIPGVKSVINVSMPNTIKQYIHRVGRTARGGATGRACTLVGESERKLLRELYRD 427
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 421
S +++R++ ++ + I+ + D + IL+EE E L++AE E +AEN+I H++
Sbjct: 428 NSSTMRNRVIKTDVTMQFKRYIDSLADDIRQILREEEEMAQLQEAEREVRRAENLILHED 487
Query: 422 EIFARPKRTWFVTEKEK 438
EI AR RTW +EK+K
Sbjct: 488 EIKARAARTWIQSEKDK 504
>gi|400595961|gb|EJP63749.1| DEAD/DEAH box helicase [Beauveria bassiana ARSEF 2860]
Length = 472
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 160/387 (41%), Positives = 226/387 (58%), Gaps = 7/387 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL + L +CE++GY+ PT IQA IP+AL GRD+ G A TGSGKTAAFALP L+ LL
Sbjct: 54 ELGIVDALCESCESVGYTTPTSIQAKSIPVALQGRDVIGLAETGSGKTAAFALPMLQALL 113
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + L+L PTRELA Q+ E + +RC ++VGGL Q AL P
Sbjct: 114 EKPQPLFG---LVLAPTRELAAQIGQTFEALGALISLRCAVIVGGLDMVPQAIALGKKPH 170
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++DHL + L L L++DEADRLL++ F I +L++ P+ R+T LF
Sbjct: 171 VIVATPGRLVDHLEKTKGFSLRTLKYLVMDEADRLLDMDFGPSIDKLLKFVPRERRTYLF 230
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT++ V+ L + SL P+R+S S + STL + V I +R ++ L+ + ++
Sbjct: 231 SATMSSRVESLQRASLRDPVRVSVSSSKYQTVSTLLQHYVFIPHIR---KDTYLIHIINE 287
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
I+F+ T R+ IL A LHG L+Q+ RL AL FR + L+AT
Sbjct: 288 FAGKSCIVFTRTVYETQRVAILLRTLGFGAIPLHGQLSQSARLGALNKFRGGTREILVAT 347
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V V+NY P D +Y+HRVGRTARAG+ G A++ VT D L I
Sbjct: 348 DVAARGLDIPKVDIVLNYDIPSDSKTYIHRVGRTARAGKSGVAISLVTQYDLELFTRIEA 407
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQME 387
G KL ++ + + +E+ +
Sbjct: 408 ALGKKLDEFPTEKEEVMTFQARVEEAQ 434
>gi|353241604|emb|CCA73408.1| probable DEAD box protein (putative RNA helicase) [Piriformospora
indica DSM 11827]
Length = 458
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 170/384 (44%), Positives = 221/384 (57%), Gaps = 8/384 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L LL+ EALGY T IQA IP AL RDI G A TGSGKTAAFALP L++
Sbjct: 36 LGLIPELLQTVEALGYKNATSIQAQAIPSALQDRDIIGVAKTGSGKTAAFALPILQKWWE 95
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
PK + A IL PTRELA Q+ E + +RCC +VGGL Q+ AL P I
Sbjct: 96 DPKPLYAC---ILAPTRELAYQIQKQFEALGANLGVRCCCIVGGLDIMAQKVALAKRPHI 152
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
VVATPGR+ DHL N+ L L L+LDEADRLL++ F I +++++ PK R+TMLFS
Sbjct: 153 VVATPGRLQDHLENTKGFSLRSLKYLVLDEADRLLDMDFGPIIDKILKVIPKERRTMLFS 212
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR-EVNQEAVLLSLCSKT 241
AT++ V L + SL P+++ STL + V MR EVN ++ SL K+
Sbjct: 213 ATMSTKVKRLQRASLVNPVKVEVSSKYSTVSTLQQYYVFGPHMRKEVNMITLVRSLSGKS 272
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+I+F+ T RL ++ + A LH L+Q+ RL +L FR LIATD
Sbjct: 273 ----IIVFTNTVNDTIRLTLMLRALNIGAIPLHSKLSQSTRLGSLNKFRAGGRQVLIATD 328
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V VINY P++ Y+HRVGRTARAGR G A+TFVT D I +
Sbjct: 329 VAARGLDIPQVDVVINYGVPQNSKDYIHRVGRTARAGRAGKAITFVTQYDIEFHLRIEEV 388
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQ 385
G K+ ++ EQ ++ +E+
Sbjct: 389 IGKKMDEWVIPEQEAAMLAEKVEE 412
>gi|302412236|ref|XP_003003951.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102]
gi|261357856|gb|EEY20284.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102]
Length = 486
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 162/367 (44%), Positives = 216/367 (58%), Gaps = 9/367 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L+ A EALGY PTPIQ IPLAL GRD+ G A TGSGKTAAFALP L+ LL
Sbjct: 65 DLGVVESLVEATEALGYKHPTPIQEKSIPLALAGRDVIGLAETGSGKTAAFALPVLQALL 124
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P + A+ ++ PTRELA Q+ E + ++RC ++VGGL Q AL P
Sbjct: 125 EKPSGLFAV---VMAPTRELAAQIAQTFEALGSLINLRCAVIVGGLDMVQQAIALGKKPH 181
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+VVATPGR++DHL + L L L+LDEADRLL++ F I ++++ P+ R T LF
Sbjct: 182 VVVATPGRLLDHLEKTKGFSLRSLKYLVLDEADRLLDMDFGPSIDKILKFIPRERHTYLF 241
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKR-PSTLTEEVVRI-RRMREVNQEAVLLSLCS 239
SAT++ V+ L + SL P R+S + + STL + + I +++V ++ S
Sbjct: 242 SATMSSKVESLQRASLKDPARVSVQSNGYQVVSTLLQNFLFIPHALKDVYCVHLINSFIG 301
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+T I+F T RL IL A LHG L+Q+ RL AL FR D L+A
Sbjct: 302 QT----TIVFLRTVHDTQRLAILLRTLGFSALPLHGQLSQSARLGALNKFRAGSRDILVA 357
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVAARGLDI V VINY P+D +Y+HRVGRTARAG+ G A++ VT D + I
Sbjct: 358 TDVAARGLDIPNVDVVINYDLPQDSKTYIHRVGRTARAGKSGRALSLVTQYDLEIWLRIE 417
Query: 360 KRAGSKL 366
G KL
Sbjct: 418 ASMGKKL 424
>gi|358386646|gb|EHK24241.1| hypothetical protein TRIVIDRAFT_31450 [Trichoderma virens Gv29-8]
Length = 479
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 164/410 (40%), Positives = 236/410 (57%), Gaps = 17/410 (4%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL + L ACE+L Y PT IQA IP+AL GRD+ G A TGSGKTAAFALP L+ LL
Sbjct: 60 ELGIVDSLCEACESLNYKHPTSIQAKSIPVALQGRDVIGLAETGSGKTAAFALPILQALL 119
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + L+L PTRELA Q+ E + +RC ++VGGL Q AL P
Sbjct: 120 EKPQPLFG---LVLAPTRELAAQIGQSFEALGALISLRCAVIVGGLDMVPQAIALGKKPH 176
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL + L L L++DEADRLL++ F I ++++ P+ R+T LF
Sbjct: 177 IIVATPGRLVDHLEKTKGFSLRSLKYLVMDEADRLLDMDFGPSIDKILKFIPRERRTYLF 236
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSK 240
SATL+ V+ L + SL P+R+S S + STL + + + R ++ L+ L ++
Sbjct: 237 SATLSSKVESLQRASLRDPVRVSVSSSKYQTVSTLLQHYIFVPHKR---KDTYLIYLVNE 293
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+IIF+ T R+ IL A LHG L+Q+ RL AL F+ + L+AT
Sbjct: 294 FAGKSIIIFTRTVFETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFKGGSREILVAT 353
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V V+N P+D +Y+HRVGRTARAG+ G A++ VT D + + I
Sbjct: 354 DVAARGLDIPAVDVVLNLDLPQDSKTYIHRVGRTARAGKSGIAISIVTQYDVEIYQRIEA 413
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEA 410
G +L++ ++ + + +E+ +RE R+ KA +E+
Sbjct: 414 ALGKQLETYPTEKEEVMAFQSRVEEA----------QRETRVEMKAFLES 453
>gi|346978651|gb|EGY22103.1| ATP-dependent rRNA helicase rrp-3 [Verticillium dahliae VdLs.17]
Length = 486
Score = 291 bits (746), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 162/367 (44%), Positives = 216/367 (58%), Gaps = 9/367 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L+ A EALGY PTPIQ IPLAL GRD+ G A TGSGKTAAFALP L+ LL
Sbjct: 65 DLGVVESLVEATEALGYKHPTPIQEKSIPLALEGRDVIGLAETGSGKTAAFALPVLQALL 124
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P + A+ ++ PTRELA Q+ E + ++RC ++VGGL Q AL P
Sbjct: 125 EKPSGLFAV---VMAPTRELAAQIAQTFEALGSLINLRCAVIVGGLDMVQQAIALGKKPH 181
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+VVATPGR++DHL + L L L+LDEADRLL++ F I ++++ P+ R T LF
Sbjct: 182 VVVATPGRLLDHLEKTKGFSLRSLKYLVLDEADRLLDMDFGPSIDKILKFIPRERHTYLF 241
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKR-PSTLTEEVVRI-RRMREVNQEAVLLSLCS 239
SAT++ V+ L + SL P R+S + + STL + + I +++V ++ S
Sbjct: 242 SATMSSKVESLQRASLKDPARVSVQSNGYQVVSTLLQNYLFIPHALKDVYCVHLINSFIG 301
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+T I+F T RL IL A LHG L+Q+ RL AL FR D L+A
Sbjct: 302 QT----TIVFLRTVHDTQRLAILLRTLGFSALPLHGQLSQSARLGALNKFRAGSRDILVA 357
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVAARGLDI V VINY P+D +Y+HRVGRTARAG+ G A++ VT D + I
Sbjct: 358 TDVAARGLDIPNVDVVINYDLPQDSKTYIHRVGRTARAGKSGRALSLVTQYDLEIWLRIE 417
Query: 360 KRAGSKL 366
G KL
Sbjct: 418 ASMGKKL 424
>gi|326476440|gb|EGE00450.1| ATP-dependent rRNA helicase RRP3 [Trichophyton tonsurans CBS
112818]
gi|326482119|gb|EGE06129.1| ATP-dependent rRNA helicase RRP3 [Trichophyton equinum CBS 127.97]
Length = 474
Score = 291 bits (746), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 160/367 (43%), Positives = 222/367 (60%), Gaps = 9/367 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L AC +LGY PTPIQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+
Sbjct: 53 DLGIIDSLCDACTSLGYKNPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALM 112
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ P L+L PTRELAVQ+ E + +RC ++VGG+ Q +L P
Sbjct: 113 EKPQ--PYFG-LVLAPTRELAVQITEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPH 169
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L +L L++DEADRLL+L F + +++++ P+ R+T LF
Sbjct: 170 IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLF 229
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRI-RRMREVNQEAVLLSLCS 239
SATL+ V+ L + SL+ PLR+S + + STL + + I + +++ +L
Sbjct: 230 SATLSSKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDIYLVHILNEFPG 289
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+T IIF+ T RL IL A LHG L+Q+ RL AL FR D L+A
Sbjct: 290 QT----TIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILVA 345
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVAARGLDI V V+N+ P D +Y+HRVGRTARAG+ G A++ VT + + + I
Sbjct: 346 TDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQRIE 405
Query: 360 KRAGSKL 366
G +L
Sbjct: 406 AALGKQL 412
>gi|154315003|ref|XP_001556825.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
gi|160358659|sp|A6RW56.1|RRP3_BOTFB RecName: Full=ATP-dependent rRNA helicase rrp3
gi|347841755|emb|CCD56327.1| similar to ATP-dependent rRNA helicase rrp3 [Botryotinia
fuckeliana]
Length = 486
Score = 291 bits (746), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 155/364 (42%), Positives = 219/364 (60%), Gaps = 5/364 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L AC+ LGY PTPIQ IPLAL GRD+ G A TGSGKTAAFALP L+ LL
Sbjct: 64 DLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQALL 123
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + L+L PTRELA Q+ E + ++C ++VGG+ Q AL P
Sbjct: 124 DKPQPLFG---LVLAPTRELAYQISQQFEALGSVIRVKCAVIVGGMDMVPQSIALGKKPH 180
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L L L++DEADRLL+L F + +++++ P+ R+T LF
Sbjct: 181 IIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYLF 240
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++ V+ L + SL PLR+S S+ + T++ + + ++++ L+ L ++
Sbjct: 241 SATISSKVESLQRASLKDPLRVSI--SSNKYQTVSTLIQNYIFIPLIHKDTYLIYLLNEF 298
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
IIF+ T R+ IL A LHG L+Q+ RL AL FR + L+ATD
Sbjct: 299 AGQSAIIFTRTVNETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGSREILVATD 358
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V V+NY P+D +Y+HRVGRTARAG+ G+A++ VT D + I
Sbjct: 359 VAARGLDIPSVDVVLNYDVPQDSKTYIHRVGRTARAGKSGHAISVVTQYDLEIFMRIEAA 418
Query: 362 AGSK 365
G K
Sbjct: 419 LGKK 422
>gi|322417740|ref|YP_004196963.1| DEAD/DEAH box helicase [Geobacter sp. M18]
gi|320124127|gb|ADW11687.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M18]
Length = 442
Score = 291 bits (745), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 158/370 (42%), Positives = 227/370 (61%), Gaps = 4/370 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
LNLS PL++A A GY++PTPIQA IPLAL+GRD+ GSA TG+GKTA+F LP LERLL
Sbjct: 6 LNLSAPLVKAINACGYTEPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPALERLLV 65
Query: 63 -RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P R R+L+LTPTRELA QV ++ +F +RC ++GG+ + Q L D
Sbjct: 66 PSPARGKGPRILVLTPTRELANQVVDAVKTYGKFMRVRCGSILGGMPYREQMMLLSQPVD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR+IDHL + S++ L +L+LDEADR+L++GFS ++ + P RQT+LF
Sbjct: 126 IIVATPGRLIDHL-DRRSINFSRLEMLVLDEADRMLDMGFSEDVDRIAAAAPAERQTLLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
+AT+ + + +L + L P+R++ D ++ + + MR N+ +L L +
Sbjct: 185 TATMDDAMAKLAQRLLKDPVRVAVDGQQLTNLSIEQRLHVTDDMRHKNR--LLQHLVADA 242
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+K IIFS TK+ A +L AA LHG+++Q R + R+ V L+ATD
Sbjct: 243 SVTKAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNRTITNMRRGKVRLLVATD 302
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLD+ G+ VINY P+ YVHR+GRT RAG G A++F + N+ + L I +
Sbjct: 303 VAARGLDVSGISHVINYDLPKFAEDYVHRIGRTGRAGATGIAISFCSMNEVAYLDRIERL 362
Query: 362 AGSKLKSRIV 371
G L ++
Sbjct: 363 TGKPLPQHVI 372
>gi|327307140|ref|XP_003238261.1| ATP-dependent rRNA helicase RRP3 [Trichophyton rubrum CBS 118892]
gi|326458517|gb|EGD83970.1| ATP-dependent rRNA helicase RRP3 [Trichophyton rubrum CBS 118892]
Length = 474
Score = 291 bits (745), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 160/367 (43%), Positives = 222/367 (60%), Gaps = 9/367 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L AC +LGY PTPIQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+
Sbjct: 53 DLGIIDSLCDACTSLGYKTPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALM 112
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ P L+L PTRELAVQ+ E + +RC ++VGG+ Q +L P
Sbjct: 113 EKPQ--PYFG-LVLAPTRELAVQISEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPH 169
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L +L L++DEADRLL+L F + +++++ P+ R+T LF
Sbjct: 170 IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLF 229
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRI-RRMREVNQEAVLLSLCS 239
SATL+ V+ L + SL+ PLR+S + + STL + + I + +++ +L
Sbjct: 230 SATLSSKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDIYLVHILNEFPG 289
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+T IIF+ T RL IL A LHG L+Q+ RL AL FR D L+A
Sbjct: 290 QT----TIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILVA 345
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVAARGLDI V V+N+ P D +Y+HRVGRTARAG+ G A++ VT + + + I
Sbjct: 346 TDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQRIE 405
Query: 360 KRAGSKL 366
G +L
Sbjct: 406 AALGKQL 412
>gi|393220360|gb|EJD05846.1| DEAD-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 450
Score = 291 bits (745), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 159/366 (43%), Positives = 217/366 (59%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL + PLL A E + + KPT IQA +P A++GRDI G A TGSGKT AFALP L+RL
Sbjct: 19 ELGVIGPLLEALEQMNFKKPTDIQAEALPHAISGRDIIGVAETGSGKTVAFALPILQRLW 78
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
PK + A +L PTRELA Q+ E + +RC ++VGG++ Q AL P
Sbjct: 79 EEPKGLFAC---VLAPTRELAYQISQQFESLGSAIGVRCAVIVGGMNMVDQAVALAKRPH 135
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IVVATPGR+ DHL N+ L + L+LDEADRLL++ F I +++++ PK R T LF
Sbjct: 136 IVVATPGRLNDHLENTKGFSLRGIKFLVLDEADRLLDMDFGPIIDKILKVIPKERTTYLF 195
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T V +L + SLT P+R+ STL + + I + +EVN L+ +C+
Sbjct: 196 SATMTTKVAKLQRASLTNPVRVEVSKKYTTVSTLLQYYLFIPYKQKEVN----LIHMCNT 251
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+ +IIF+ T RL ++ + LHG L+Q+ RL AL F+ + L+AT
Sbjct: 252 LSQNSIIIFTRTVMDCQRLALILKTLGFSSVPLHGQLSQSARLGALAKFKSGGRNILVAT 311
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+A+RGLDI V VINY P Y+HRVGRTARAGR G ++T VT D L++ I
Sbjct: 312 DIASRGLDIPSVDAVINYDIPSHSKDYIHRVGRTARAGRAGNSITLVTQYDVELIQRIEA 371
Query: 361 RAGSKL 366
G K+
Sbjct: 372 VIGKKM 377
>gi|302508139|ref|XP_003016030.1| hypothetical protein ARB_05427 [Arthroderma benhamiae CBS 112371]
gi|291179599|gb|EFE35385.1| hypothetical protein ARB_05427 [Arthroderma benhamiae CBS 112371]
Length = 474
Score = 291 bits (745), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 160/367 (43%), Positives = 222/367 (60%), Gaps = 9/367 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L AC +LGY PTPIQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+
Sbjct: 53 DLGIIDSLCDACTSLGYKTPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALM 112
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ P L+L PTRELAVQ+ E + +RC ++VGG+ Q +L P
Sbjct: 113 EKPQ--PYFG-LVLAPTRELAVQITEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPH 169
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L +L L++DEADRLL+L F + +++++ P+ R+T LF
Sbjct: 170 IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLF 229
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRI-RRMREVNQEAVLLSLCS 239
SATL+ V+ L + SL+ PLR+S + + STL + + I + +++ +L
Sbjct: 230 SATLSSKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDIYLVHILNEFPG 289
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+T IIF+ T RL IL A LHG L+Q+ RL AL FR D L+A
Sbjct: 290 QT----TIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILVA 345
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVAARGLDI V V+N+ P D +Y+HRVGRTARAG+ G A++ VT + + + I
Sbjct: 346 TDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQRIE 405
Query: 360 KRAGSKL 366
G +L
Sbjct: 406 AALGKQL 412
>gi|315055611|ref|XP_003177180.1| ATP-dependent rRNA helicase RRP3 [Arthroderma gypseum CBS 118893]
gi|311339026|gb|EFQ98228.1| ATP-dependent rRNA helicase RRP3 [Arthroderma gypseum CBS 118893]
Length = 474
Score = 291 bits (745), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 160/367 (43%), Positives = 222/367 (60%), Gaps = 9/367 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L AC +LGY PTPIQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+
Sbjct: 53 DLGIIDSLCDACTSLGYKAPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALM 112
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ P L+L PTRELAVQ+ E + +RC ++VGG+ Q +L P
Sbjct: 113 EKPQ--PYFG-LVLAPTRELAVQISESFEALGSLISVRCAVIVGGMDMISQSISLGKKPH 169
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L +L L++DEADRLL+L F + +++++ P+ R+T LF
Sbjct: 170 IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLF 229
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRI-RRMREVNQEAVLLSLCS 239
SATL+ V+ L + SL+ PLR+S + + STL + + I + +++ +L
Sbjct: 230 SATLSSKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDIYLVHILNEFPG 289
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+T IIF+ T RL IL A LHG L+Q+ RL AL FR D L+A
Sbjct: 290 QT----TIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILVA 345
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVAARGLDI V V+N+ P D +Y+HRVGRTARAG+ G A++ VT + + + I
Sbjct: 346 TDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQRIE 405
Query: 360 KRAGSKL 366
G +L
Sbjct: 406 AALGKQL 412
>gi|302660698|ref|XP_003022025.1| hypothetical protein TRV_03842 [Trichophyton verrucosum HKI 0517]
gi|291185951|gb|EFE41407.1| hypothetical protein TRV_03842 [Trichophyton verrucosum HKI 0517]
Length = 474
Score = 291 bits (745), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 160/367 (43%), Positives = 222/367 (60%), Gaps = 9/367 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L AC +LGY PTPIQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+
Sbjct: 53 DLGIIDSLCDACTSLGYKTPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALM 112
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ P L+L PTRELAVQ+ E + +RC ++VGG+ Q +L P
Sbjct: 113 EKPQ--PYFG-LVLAPTRELAVQITEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPH 169
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L +L L++DEADRLL+L F + +++++ P+ R+T LF
Sbjct: 170 IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLF 229
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRI-RRMREVNQEAVLLSLCS 239
SATL+ V+ L + SL+ PLR+S + + STL + + I + +++ +L
Sbjct: 230 SATLSSKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDIYLVHILNEFPG 289
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+T IIF+ T RL IL A LHG L+Q+ RL AL FR D L+A
Sbjct: 290 QT----TIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILVA 345
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVAARGLDI V V+N+ P D +Y+HRVGRTARAG+ G A++ VT + + + I
Sbjct: 346 TDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQRIE 405
Query: 360 KRAGSKL 366
G +L
Sbjct: 406 AALGKQL 412
>gi|320038649|gb|EFW20584.1| ATP-dependent rRNA helicase RRP3 [Coccidioides posadasii str.
Silveira]
Length = 474
Score = 291 bits (744), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 161/400 (40%), Positives = 233/400 (58%), Gaps = 5/400 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L AC++LGY PT IQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+
Sbjct: 52 DLGIIDSLCEACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALM 111
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + L+L PTRELA Q+ E + +RC ++VGG+ Q AL P
Sbjct: 112 DKPQSMFG---LVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGKKPH 168
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L L L++DEADRLL+L F + +++++ PK R+T LF
Sbjct: 169 IIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPKERRTYLF 228
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++ V+ L + SL+ PLR+S S+ + T++ + + +++ L+ L ++
Sbjct: 229 SATMSSKVESLQRASLSNPLRVSV--SSNKYQTVSTLLQNCLIIPHKHKDIYLIYLLNEF 286
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
VI+F+ T RL L A LHG L+Q+ RL AL FR + + L+ATD
Sbjct: 287 PGQSVIVFTRTVNETQRLANLLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILVATD 346
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V V+NY P D +Y+HRVGRTARAG+ G A + VT D + + I
Sbjct: 347 VAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQYDVEIWQRIEAA 406
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 401
G +L V ++ + S + + + ++E E R
Sbjct: 407 LGKELDEYKVEKEEVMVLSDRVGEAQRHAITEMKELHENR 446
>gi|405122110|gb|AFR96877.1| ATP-dependent rRNA helicase RRP3 [Cryptococcus neoformans var.
grubii H99]
Length = 484
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 161/395 (40%), Positives = 234/395 (59%), Gaps = 6/395 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L +S L RAC ++G+ KP+ IQA IP AL G+DI G A TGSGKTAAF+LP L+ L
Sbjct: 42 DLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTLW 101
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ A L+L PTRELA Q+ + + +R ++VGG+ Q AL P
Sbjct: 102 ENPQPFFA---LVLAPTRELAYQISQQVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRPH 158
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++DHL N+ L L L++DEADRLL+L F I +++++ PK R T LF
Sbjct: 159 VIVATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLDLDFGPIIDKVLKVIPKERNTYLF 218
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T V +L + SL KP+R+ + + ST++ + + N++A LL L ++
Sbjct: 219 SATMTTKVAKLQRASLNKPVRVEV---SSKYSTVSTLLQHYLLLPLKNKDAYLLYLANEL 275
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+S +IIF+ T + RL I+ A LHG +TQ+ RL +L F+ L+ATD
Sbjct: 276 SSSSMIIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKSGGRSILVATD 335
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V VINY P + YVHRVGRTARAGR G ++T VT D +L+ I
Sbjct: 336 VASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEILQRIESH 395
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQE 396
G K+ S V ++++ + + + + A ++E
Sbjct: 396 IGKKMTSFDVDKEAVALLTDTVAKANREAALEMRE 430
>gi|346318712|gb|EGX88314.1| ATP-dependent rRNA helicase RRP3 [Cordyceps militaris CM01]
Length = 480
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 163/413 (39%), Positives = 233/413 (56%), Gaps = 11/413 (2%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 68
L ACE LGY PT IQA IP+AL GRD+ G A TGSGKTAAFALP L+ LL +P+ +
Sbjct: 69 LCEACETLGYKTPTGIQAQSIPVALQGRDVIGLAETGSGKTAAFALPVLQALLDKPQPLF 128
Query: 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 128
L+L PTRELA Q+ E + +RC ++VGGL Q AL P ++VATPG
Sbjct: 129 G---LVLAPTRELAAQIGQTFEALGALISLRCAVIVGGLDMVPQAVALGKKPHVIVATPG 185
Query: 129 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 188
R++DHL + L L L+LDEADRLL++ F I +L++ P+ R+T LFSAT++
Sbjct: 186 RLVDHLEKTKGFSLRTLKYLVLDEADRLLDMDFGESIEKLLKFIPRERRTYLFSATMSSS 245
Query: 189 VDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVI 247
V+ L + SL P+R+S S + STL + V I R ++ L+ + ++ I
Sbjct: 246 VESLQRASLRDPVRVSVSASKYQTVSTLKQHYVFIPHKR---KDTYLIHIINEFAGKSCI 302
Query: 248 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 307
+F+ T R +L A LHG L+Q+ RL AL FR + L+ATDVAARGL
Sbjct: 303 VFTRTVYETQRCAVLLRTLGFGAIPLHGQLSQSARLGALNKFRGGTREILVATDVAARGL 362
Query: 308 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 367
DI V ++NY P D +Y+HRVGRTARAG+ G A++ VT D L I G KL
Sbjct: 363 DIPKVDVILNYDIPSDSKTYIHRVGRTARAGKSGVAISIVTQFDIELFTRIEAALGKKLD 422
Query: 368 SRIVAEQSITKWSKIIEQME----DQVAAILQEEREERILRKAEMEATKAENM 416
E+ + + +++ + +++ I++ + +RK + ++M
Sbjct: 423 EFDTKEEEVMTFQSRVQEAQRHARNEMNNIMESRNKGATMRKGRDNKRRRDDM 475
>gi|58271466|ref|XP_572889.1| ATP-dependent RNA helicase [Cryptococcus neoformans var. neoformans
JEC21]
gi|134115044|ref|XP_773820.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819312|sp|P0CR01.1|RRP3_CRYNB RecName: Full=ATP-dependent rRNA helicase RRP3
gi|338819313|sp|P0CR00.1|RRP3_CRYNJ RecName: Full=ATP-dependent rRNA helicase RRP3
gi|50256448|gb|EAL19173.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229148|gb|AAW45582.1| ATP-dependent RNA helicase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 484
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 161/395 (40%), Positives = 234/395 (59%), Gaps = 6/395 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L +S L RAC ++G+ KP+ IQA IP AL G+DI G A TGSGKTAAF+LP L+ L
Sbjct: 42 DLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTLW 101
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ A L+L PTRELA Q+ + + +R ++VGG+ Q AL P
Sbjct: 102 ENPQPFFA---LVLAPTRELAYQISQQVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRPH 158
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L L L++DEADRLL+L F I +++++ PK R T LF
Sbjct: 159 IIVATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLDLDFGPIIDKILKVIPKERNTYLF 218
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T V +L + SL KP+R+ + + ST++ + + N++A LL L ++
Sbjct: 219 SATMTTKVAKLQRASLNKPVRVEV---SSKYSTVSTLLQHYLLLPLKNKDAYLLYLANEL 275
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+S ++IF+ T + RL I+ A LHG +TQ+ RL +L F+ L+ATD
Sbjct: 276 SSSSMMIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKSGGRSILVATD 335
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V VINY P + YVHRVGRTARAGR G ++T VT D +L+ I
Sbjct: 336 VASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEILQRIESH 395
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQE 396
G K+ S V ++++ + + + + A ++E
Sbjct: 396 IGKKMTSFDVDKEAVALLTDTVAKANREAALEMRE 430
>gi|322703417|gb|EFY95026.1| ATP-dependent rRNA helicase RRP3 [Metarhizium anisopliae ARSEF 23]
Length = 478
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 160/366 (43%), Positives = 218/366 (59%), Gaps = 7/366 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL + L ACE+L Y PTPIQ IP+AL RDI G A TGSGKTAAFALP L+ LL
Sbjct: 61 ELGIVDSLCEACESLNYKFPTPIQEKSIPIALQDRDIIGLAETGSGKTAAFALPILQALL 120
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + L+L PTRELA Q+ E + +RC ++VGGL Q AL P
Sbjct: 121 DKPQPLFG---LVLAPTRELAHQIGQAFEALGSSISLRCAVIVGGLDMVPQAVALGKKPH 177
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL + L L L++DEADRLL++ F I +L++ P+ R+T LF
Sbjct: 178 IIVATPGRLVDHLEKTKGFSLRTLKYLVMDEADRLLDMDFGPAIDKLLKFIPRERRTYLF 237
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSK 240
SATL+ V+ L + SL P+R+S + + STL + ++ + + R ++ L+ L ++
Sbjct: 238 SATLSSKVESLQRASLRDPVRVSVSSNKYQTVSTLLQNLLVVPQKR---KDTYLIYLVNE 294
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
I+F+ T R+ IL A LHG L+Q+ RL AL FR D L+AT
Sbjct: 295 FTGKSTIVFTRTVWETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFRSGTRDILVAT 354
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V V+NY P+D +Y+HRVGRTARAG+ G A++ VT D + + I
Sbjct: 355 DVAARGLDISKVDVVLNYDLPQDSKTYIHRVGRTARAGKSGIAISLVTQYDIEIFQRIEA 414
Query: 361 RAGSKL 366
G KL
Sbjct: 415 ALGKKL 420
>gi|408395320|gb|EKJ74502.1| hypothetical protein FPSE_05252 [Fusarium pseudograminearum CS3096]
Length = 487
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 157/386 (40%), Positives = 223/386 (57%), Gaps = 5/386 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L ACE L Y PTPIQ IP+AL GRDI G A TGSGKTAAFALP L+ LL
Sbjct: 64 DLGVNDALCEACEKLNYKYPTPIQEQSIPVALQGRDIIGLAETGSGKTAAFALPVLQALL 123
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + L+L PTRELA Q+ E + +RC ++VGGL Q AL P
Sbjct: 124 DKPQPLFG---LVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQSIALGKKPH 180
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL + L L LI+DEADRLL++ F I ++++ P+ R+T LF
Sbjct: 181 IIVATPGRLVDHLEKTKGFSLRTLKYLIMDEADRLLDMDFGPSIDKILKFVPRERRTYLF 240
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++ ++ L + SL P+++S S+ + T++ + + ++ L+ L ++
Sbjct: 241 SATISSKIESLQRASLRDPVKVSI--SSNKYQTVSTLLQHYLFIPHPQKDVHLIYLINEH 298
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
I+F+ T R+ IL A LHG L+Q+ RL AL FR D L+ATD
Sbjct: 299 AGQSTIVFTRTVWETQRVSILLRTLGFGAIPLHGQLSQSSRLGALNKFRSGTRDILVATD 358
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V V+NY P+D +YVHRVGRTARAG+ G A++ VT D + I
Sbjct: 359 VAARGLDIPSVDVVLNYDLPQDSKTYVHRVGRTARAGKSGVAISLVTQYDLEIYLRIEAA 418
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQME 387
G KL ++ + + +E+ +
Sbjct: 419 LGKKLGEYPTEKEEVMAFQSRVEEAQ 444
>gi|349578615|dbj|GAA23780.1| K7_Rrp3p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 501
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 164/404 (40%), Positives = 231/404 (57%), Gaps = 7/404 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNL L++AC+ L YSKPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L RL
Sbjct: 85 ELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLW 144
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + A IL PTRELA Q+ + + +R +VGG++ Q L P
Sbjct: 145 HDQEPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 201
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQTML 180
IV+ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R T L
Sbjct: 202 IVIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 261
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L ++
Sbjct: 262 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL---KNTYLIYLLNE 318
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+IIF+ TK A RL L L A LHG+L Q QR+ AL+LF+ L+AT
Sbjct: 319 FIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVAT 378
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V V+NY P D SY+HRVGRTARAGR G +++ V+ D L+ I +
Sbjct: 379 DVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 438
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 404
G KL V + I +++ +V + +E+I R
Sbjct: 439 VLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIAR 482
>gi|328771154|gb|EGF81194.1| hypothetical protein BATDEDRAFT_87448 [Batrachochytrium
dendrobatidis JAM81]
Length = 445
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 163/408 (39%), Positives = 231/408 (56%), Gaps = 21/408 (5%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 68
L+ AC LG+ KP+ IQ A IP+ALTGRDI G A TGSGKTAAFALP L+ L P+ +
Sbjct: 22 LIEACTTLGFKKPSDIQCASIPVALTGRDIIGLAQTGSGKTAAFALPILQTLFANPQHLY 81
Query: 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 128
A ++ PTRELA Q+ E + +RC ++VGG+ Q AL P +++ TPG
Sbjct: 82 AC---VIAPTRELAFQISEQFEALGSVIGVRCAVIVGGMDMMSQSIALSKKPHVIICTPG 138
Query: 129 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 188
R++DHL N+ +L L L++DEADRLL+L F AEI +++++ P+ R T LFSAT+T
Sbjct: 139 RLVDHLENTKGFNLKHLKYLVMDEADRLLDLDFGAEIEKVLKVIPRERNTYLFSATMTSK 198
Query: 189 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVII 248
V++L + SL P+++ A + ST+ + +E L L ++ I+
Sbjct: 199 VEKLQRASLVNPVKVEV---ATKYSTVDTLLQYYTFFPYKQKECYLTYLLNELSGQTCIV 255
Query: 249 FSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 308
F+ T + +L ++ +A LHG LTQ +RL AL F+ + LIATDVA+RGLD
Sbjct: 256 FTLTCASTQKLALMLRNLGFEAVCLHGQLTQPKRLGALAKFKSGGRNILIATDVASRGLD 315
Query: 309 IIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 368
I GV VINY P+ Y+HRVGRTARAGR G ++T VT D + I
Sbjct: 316 IPGVDVVINYDVPQSSKDYIHRVGRTARAGRSGKSITLVTQYDVEWYQRI---------- 365
Query: 369 RIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENM 416
E +I K D+ A ++ +ER +R A M+ K EN+
Sbjct: 366 ----EHAIQKKLTEYPFGHDKSAVLMLQERVSEAVRFAHMQ-LKDENL 408
>gi|143462274|sp|Q0CIQ3.2|RRP3_ASPTN RecName: Full=ATP-dependent rRNA helicase rrp3
Length = 445
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 161/366 (43%), Positives = 221/366 (60%), Gaps = 7/366 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL + L ACE LGY+ PTPIQ CIP+AL GRD+ G A TGSGKTAAF LP L+ L+
Sbjct: 32 ELGVIDSLCEACEELGYTAPTPIQERCIPIALEGRDLIGLAETGSGKTAAFVLPMLQALM 91
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P++ + LIL PTRELA Q+ +E + +RC L++GG+ Q AL P
Sbjct: 92 DKPQQFHS---LILAPTRELAQQIAHTVEALGARISVRCTLLIGGMDMISQAIALGKKPH 148
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++DHL N+ L L L+LDEADRLL+L F + +L+RL PKR+ T LF
Sbjct: 149 VIVATPGRLLDHLENTKGFSLRTLKYLVLDEADRLLDLDFGPILDKLLRLLPKRK-TYLF 207
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++ V+ L + SL+ P+R+S + S L + + I ++ L+ L ++
Sbjct: 208 SATMSSKVESLQRASLSDPVRVSVSTKNQTASKLLQSYLFIPHK---FKDFYLVYLLNER 264
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
IIF+ T RL I+ A +HG L+Q+ RL +L FR + + LIATD
Sbjct: 265 AGQMGIIFTRTVHETQRLSIMLRNLGFPAIPIHGQLSQSARLASLNKFRARSRNLLIATD 324
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V V+NY P+D +Y+HRVGRTARAG+ G A +FVT + L I
Sbjct: 325 VAARGLDIPAVDYVLNYDLPQDSKTYIHRVGRTARAGKSGIAFSFVTQYEVELWLRIEDA 384
Query: 362 AGSKLK 367
G K++
Sbjct: 385 LGKKVE 390
>gi|449297073|gb|EMC93092.1| hypothetical protein BAUCODRAFT_77654 [Baudoinia compniacensis UAMH
10762]
Length = 496
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 161/381 (42%), Positives = 224/381 (58%), Gaps = 7/381 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC +LG+ PT IQ IPLAL+GRDI G A TGSGKTAAFALP L+ LL
Sbjct: 62 DLGVNESLCDACTSLGFKTPTAIQREAIPLALSGRDIIGLAETGSGKTAAFALPILQALL 121
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ P+ L+L PTRELA Q+ E + +RC ++VGG+ Q AL P
Sbjct: 122 HDPQPFFG---LVLAPTRELAYQISQQFEALGSLIRVRCAVIVGGMDMVPQAIALAKKPH 178
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IVVATPGR++DHL N+ L L LI+DEADRLL+L F + +++++ P+ R+T LF
Sbjct: 179 IVVATPGRLLDHLENTKGFSLRSLKYLIMDEADRLLDLDFGPILDKILQVLPRERRTALF 238
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT+ +D L + +L P+R+S S+ + + L ++ + I +++ L+ L ++
Sbjct: 239 SATMNTKLDNLTRAALRNPVRVSISTSSYQTVANLLQQYIFIPHK---HKDVYLIHLLTE 295
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
I+F+ T RL L A LHG L Q+ RL AL FR L+AT
Sbjct: 296 FSGQTCILFTRTVTETQRLAFLLRALNFSAIPLHGQLPQSARLGALNKFRSGSRSILVAT 355
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V VIN+ P D +YVHRVGRTARAG+ G AV+ VT D + + I K
Sbjct: 356 DVAARGLDIPSVDLVINFDLPPDSKTYVHRVGRTARAGKSGVAVSVVTQYDVEVFQRIEK 415
Query: 361 RAGSKLKSRIVAEQSITKWSK 381
G KL+ R V + + +++
Sbjct: 416 ALGRKLEERAVGREEVMVFAE 436
>gi|321262460|ref|XP_003195949.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276]
gi|317462423|gb|ADV24162.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276]
Length = 484
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 159/375 (42%), Positives = 226/375 (60%), Gaps = 6/375 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L +S L RAC ++G+ KP+ IQA IP AL G+DI G A TGSGKTAAF+LP L+ L
Sbjct: 42 DLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTLW 101
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ A L+L PTRELA Q+ I + +R ++VGG+ Q AL P
Sbjct: 102 ENPQPFFA---LVLAPTRELAYQISQQITSLGSGIGVRTAVLVGGMDMMSQSIALSKRPH 158
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++DHL N+ L L L++DEADRLL+L F I +++++ PK R T LF
Sbjct: 159 VIVATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLDLDFGPIIDKVLKVIPKERNTYLF 218
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T V +L + SL KP+R+ + + ST++ + + N+++ LL L ++
Sbjct: 219 SATMTTKVAKLQRASLNKPVRVEV---SSKYSTVSTLLQHYLLLPLKNKDSYLLYLANEL 275
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+S +IIF+ T + RL I+ A LHG +TQ+ RL +L F+ L+ATD
Sbjct: 276 SSSSMIIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKSGGRSILVATD 335
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V VINY P + YVHRVGRTARAGR G ++T VT D +L+ I
Sbjct: 336 VASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEILQRIESH 395
Query: 362 AGSKLKSRIVAEQSI 376
G K+ S V ++++
Sbjct: 396 IGKKMTSFDVDKEAV 410
>gi|50543676|ref|XP_500004.1| YALI0A12133p [Yarrowia lipolytica]
gi|74660195|sp|Q6CH58.1|RRP3_YARLI RecName: Full=ATP-dependent rRNA helicase RRP3
gi|49645869|emb|CAG83933.1| YALI0A12133p [Yarrowia lipolytica CLIB122]
Length = 480
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 160/399 (40%), Positives = 232/399 (58%), Gaps = 9/399 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + + CE L ++KPTPIQA IP AL GRDI G A TGSGKTAAFA+P L+ L
Sbjct: 68 DLGVIDSICETCEELKFTKPTPIQAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVLQSLY 127
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ + ++L PTRELA Q+ E + +R +VVGG++ Q AL P
Sbjct: 128 ENPQ---PLYCVVLAPTRELAYQISETFEALGSAMGLRTAVVVGGMNMMTQAVALSKKPH 184
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++DHL N+ L L L++DEADRLL++ F + +++++ P++R T LF
Sbjct: 185 VIVATPGRLVDHLENTKGFSLRTLKFLVMDEADRLLDMEFGPSLDKILKVIPRQRNTYLF 244
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T V++L + SL P+R++ + L + +V +++ L+ L S+
Sbjct: 245 SATMTSKVEKLQRASLVDPVRVAVSTKYQTADNLLQYMVFCPFK---HKDTHLVYLVSEN 301
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ +IIF+ TK R+ +L A LHG+L+Q RL AL F+ + LIATD
Sbjct: 302 AGNSMIIFARTKSDTQRISLLLRNLGYGAIPLHGDLSQTARLGALNKFKSGSRNILIATD 361
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V VINY P D SY+HRVGRTARAGR G +V V+ D L I
Sbjct: 362 VASRGLDIPAVDLVINYDIPSDSKSYIHRVGRTARAGRAGKSVALVSQYDLELYLRIEGA 421
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREE 400
G KL S + +++ +S E++ + A +QE + E
Sbjct: 422 LGKKLDSYPLESEAVMLFS---ERVAEASRAAIQEMKGE 457
>gi|46116372|ref|XP_384204.1| hypothetical protein FG04028.1 [Gibberella zeae PH-1]
gi|91207782|sp|Q4IFI0.1|RRP3_GIBZE RecName: Full=ATP-dependent rRNA helicase RRP3
Length = 486
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 157/386 (40%), Positives = 223/386 (57%), Gaps = 5/386 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L ACE L Y PTPIQ IP+AL GRDI G A TGSGKTAAFALP L+ LL
Sbjct: 64 DLGVNDALCEACEKLNYKYPTPIQEKSIPVALQGRDIIGLAETGSGKTAAFALPVLQALL 123
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + L+L PTRELA Q+ E + +RC ++VGGL Q AL P
Sbjct: 124 DKPQPLFG---LVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQAIALGKKPH 180
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IVVATPGR++DHL + L L LI+DEADRLL++ F I ++++ P+ R+T LF
Sbjct: 181 IVVATPGRLVDHLEKTKGFSLRTLKYLIMDEADRLLDMDFGPSIDKILKFVPRERRTYLF 240
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++ ++ L + SL P+++S S+ + T++ + + ++ L+ L ++
Sbjct: 241 SATISSKIESLQRASLRDPVKVSI--SSNKYQTVSTLLQNYLFIPHPQKDVHLIYLINEH 298
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
I+F+ T R+ IL A LHG L+Q+ RL AL FR D L+ATD
Sbjct: 299 AGQSTIVFTRTVWETQRVSILLRTLGFGAIPLHGQLSQSSRLGALNKFRSGTRDILVATD 358
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V V+NY P+D +Y+HRVGRTARAG+ G A++ VT D + I
Sbjct: 359 VAARGLDIPSVDVVLNYDLPQDSKTYIHRVGRTARAGKSGVAISLVTQYDLEIYLRIEAA 418
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQME 387
G KL ++ + + +E+ +
Sbjct: 419 LGKKLAEYPTEKEEVMAFQSRVEEAQ 444
>gi|323308818|gb|EGA62055.1| Rrp3p [Saccharomyces cerevisiae FostersO]
Length = 501
Score = 289 bits (740), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 163/404 (40%), Positives = 231/404 (57%), Gaps = 7/404 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNL L++AC+ L YSKPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L RL
Sbjct: 85 ELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLW 144
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + A IL PTRELA Q+ + + +R +VGG++ Q L P
Sbjct: 145 HDQEPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 201
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQTML 180
I++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R T L
Sbjct: 202 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 261
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L ++
Sbjct: 262 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL---KNTYLIYLLNE 318
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+IIF+ TK A RL L L A LHG+L Q QR+ AL+LF+ L+AT
Sbjct: 319 FIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVAT 378
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V V+NY P D SY+HRVGRTARAGR G +++ V+ D L+ I +
Sbjct: 379 DVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 438
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 404
G KL V + I +++ +V + +E+I R
Sbjct: 439 VLGKKLPKESVDKNIILTLRXSVDKANGEVVMEMNRRNKEKIAR 482
>gi|171691382|ref|XP_001910616.1| hypothetical protein [Podospora anserina S mat+]
gi|170945639|emb|CAP71752.1| unnamed protein product [Podospora anserina S mat+]
Length = 490
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 154/365 (42%), Positives = 221/365 (60%), Gaps = 5/365 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L AC+ LGY +PT IQ IPLAL RDI G A TGSGKTAAFALP L+ LL
Sbjct: 66 DLGIVDSLCEACDRLGYKQPTAIQQEAIPLALQDRDIIGIAETGSGKTAAFALPILQALL 125
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + A L+L PTRELA Q+ E + ++RC L++GGL Q AL P
Sbjct: 126 DKPQPLFA---LVLAPTRELAAQIAQSFEALGSLINLRCALLLGGLDMVQQAIALGKKPH 182
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+VVATPGR++DHL + L +L ++DEADRLL++ F + ++++ P+ R+T LF
Sbjct: 183 VVVATPGRLLDHLEKTKGFSLRNLRYCVMDEADRLLDMDFGPILEKILKFLPRERRTFLF 242
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++ V+ L + SL PL+++ S + T++ V + ++++ + LC++
Sbjct: 243 SATMSSKVESLQRASLRDPLKVNV--STSKYQTVSTLVSNYLFIPHIHKDTYFIYLCNEF 300
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+I+F+ T R+ IL + A LHG L+Q+ RL AL FR + L+ATD
Sbjct: 301 AGKTMIVFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALSKFRAGTRNILVATD 360
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V VINY P+D +Y+HRVGRTARAG+ G+A++ VT D + I
Sbjct: 361 VAARGLDIPNVDCVINYDLPQDSKTYIHRVGRTARAGKSGHALSIVTQYDLEIWTRIEAA 420
Query: 362 AGSKL 366
G+KL
Sbjct: 421 LGTKL 425
>gi|320164743|gb|EFW41642.1| DEAD box ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC
30864]
Length = 594
Score = 289 bits (739), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 164/398 (41%), Positives = 227/398 (57%), Gaps = 26/398 (6%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L + L+ AC +G+ PTPIQ IP+ALTGRDI G A TGSGKTA+FALP L++LL
Sbjct: 151 LGIVPSLVEACSRMGFKAPTPIQRQSIPVALTGRDIIGLAETGSGKTASFALPVLQKLLE 210
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+P+ + A LILTPTRELA Q+ E + ++CC++VGG+ Q AL P I
Sbjct: 211 KPQPLFA---LILTPTRELAYQISEQFEALGSTIGVKCCVIVGGMDMTTQAIALSKKPHI 267
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR++DHL N+ L LI+DEADR+L + F E+ ++++ PK R T L+S
Sbjct: 268 LIATPGRIVDHLENTKGY----LKFLIMDEADRILNMDFEEEVDKILKAIPKERNTYLYS 323
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSKT 241
AT+T V +L + SL P+++ + TL ++ + I R ++ L L +
Sbjct: 324 ATMTSKVAKLQRASLRNPVKIEVATKYQTVGTLVQQYLFIPARFKDCYLTYALNQLAGNS 383
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
IIF+ T A R+ ++ A LHG LTQ +RL AL F++Q L+ATD
Sbjct: 384 ----TIIFTMTCANAQRVALMLRNLGFPAIPLHGQLTQPKRLGALNKFKEQSRSILVATD 439
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V VINY P Y+HRVGRTARAGR G ++T VT D L + I
Sbjct: 440 VASRGLDIPHVDLVINYDIPTHSKDYIHRVGRTARAGRSGRSITMVTQYDVELFQRI--- 496
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEERE 399
EQ I K ++ E E+QV +L+ E
Sbjct: 497 -----------EQLINKKMELYESEEEQVLMLLERTSE 523
>gi|259146813|emb|CAY80069.1| Rrp3p [Saccharomyces cerevisiae EC1118]
gi|365765178|gb|EHN06690.1| Rrp3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 501
Score = 289 bits (739), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 163/404 (40%), Positives = 231/404 (57%), Gaps = 7/404 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNL L++AC+ L YSKPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L RL
Sbjct: 85 ELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLW 144
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + A IL PTRELA Q+ + + +R +VGG++ Q L P
Sbjct: 145 HDQEPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 201
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQTML 180
I++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R T L
Sbjct: 202 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 261
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L ++
Sbjct: 262 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL---KNTYLIYLLNE 318
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+IIF+ TK A RL L L A LHG+L Q QR+ AL+LF+ L+AT
Sbjct: 319 FIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVAT 378
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V V+NY P D SY+HRVGRTARAGR G +++ V+ D L+ I +
Sbjct: 379 DVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 438
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 404
G KL V + I +++ +V + +E+I R
Sbjct: 439 VLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIAR 482
>gi|160358662|sp|A6ZSX1.1|RRP3_YEAS7 RecName: Full=ATP-dependent rRNA helicase RRP3; AltName:
Full=Ribosomal RNA-processing protein 3
gi|151944009|gb|EDN62302.1| ribosomal RNA processing protein [Saccharomyces cerevisiae YJM789]
gi|190405848|gb|EDV09115.1| weak RNA-dependent ATPase activity which is not specific for rRNA
[Saccharomyces cerevisiae RM11-1a]
gi|256270568|gb|EEU05749.1| Rrp3p [Saccharomyces cerevisiae JAY291]
gi|323333235|gb|EGA74633.1| Rrp3p [Saccharomyces cerevisiae AWRI796]
Length = 501
Score = 289 bits (739), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 163/404 (40%), Positives = 231/404 (57%), Gaps = 7/404 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNL L++AC+ L YSKPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L RL
Sbjct: 85 ELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLW 144
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + A IL PTRELA Q+ + + +R +VGG++ Q L P
Sbjct: 145 HDQEPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 201
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQTML 180
I++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R T L
Sbjct: 202 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 261
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L ++
Sbjct: 262 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL---KNTYLIYLLNE 318
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+IIF+ TK A RL L L A LHG+L Q QR+ AL+LF+ L+AT
Sbjct: 319 FIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVAT 378
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V V+NY P D SY+HRVGRTARAGR G +++ V+ D L+ I +
Sbjct: 379 DVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 438
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 404
G KL V + I +++ +V + +E+I R
Sbjct: 439 VLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIAR 482
>gi|323348235|gb|EGA82484.1| Rrp3p [Saccharomyces cerevisiae Lalvin QA23]
Length = 543
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 163/404 (40%), Positives = 231/404 (57%), Gaps = 7/404 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNL L++AC+ L YSKPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L RL
Sbjct: 127 ELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLW 186
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + A IL PTRELA Q+ + + +R +VGG++ Q L P
Sbjct: 187 HDQEPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 243
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQTML 180
I++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R T L
Sbjct: 244 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 303
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L ++
Sbjct: 304 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL---KNTYLIYLLNE 360
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+IIF+ TK A RL L L A LHG+L Q QR+ AL+LF+ L+AT
Sbjct: 361 FIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVAT 420
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V V+NY P D SY+HRVGRTARAGR G +++ V+ D L+ I +
Sbjct: 421 DVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 480
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 404
G KL V + I +++ +V + +E+I R
Sbjct: 481 VLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIAR 524
>gi|323354635|gb|EGA86470.1| Rrp3p [Saccharomyces cerevisiae VL3]
Length = 501
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 163/404 (40%), Positives = 231/404 (57%), Gaps = 7/404 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNL L++AC+ L YSKPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L RL
Sbjct: 85 ELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLW 144
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + A IL PTRELA Q+ + + +R +VGG++ Q L P
Sbjct: 145 HDQEPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 201
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQTML 180
I++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R T L
Sbjct: 202 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 261
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L ++
Sbjct: 262 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL---KNTYLIYLLNE 318
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+IIF+ TK A RL L L A LHG+L Q QR+ AL+LF+ L+AT
Sbjct: 319 FIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVAT 378
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V V+NY P D SY+HRVGRTARAGR G +++ V+ D L+ I +
Sbjct: 379 DVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 438
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 404
G KL V + I +++ +V + +E+I R
Sbjct: 439 VLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIAR 482
>gi|323304679|gb|EGA58441.1| Rrp3p [Saccharomyces cerevisiae FostersB]
Length = 543
Score = 288 bits (738), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 163/404 (40%), Positives = 231/404 (57%), Gaps = 7/404 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNL L++AC+ L YSKPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L RL
Sbjct: 127 ELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLW 186
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + A IL PTRELA Q+ + + +R +VGG++ Q L P
Sbjct: 187 HDQEPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 243
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQTML 180
I++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R T L
Sbjct: 244 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 303
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L ++
Sbjct: 304 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL---KNTYLIYLLNE 360
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+IIF+ TK A RL L L A LHG+L Q QR+ AL+LF+ L+AT
Sbjct: 361 FIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVAT 420
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V V+NY P D SY+HRVGRTARAGR G +++ V+ D L+ I +
Sbjct: 421 DVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 480
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 404
G KL V + I +++ +V + +E+I R
Sbjct: 481 VLGKKLPKESVDKNIILTLRGSVDKANGEVVMEMNRRNKEKIAR 524
>gi|449666070|ref|XP_002163050.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like, partial
[Hydra magnipapillata]
Length = 431
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 156/369 (42%), Positives = 218/369 (59%), Gaps = 8/369 (2%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 68
L +C LG++ PT IQ IPLAL G+DI G A TGSGKT AFALP L+ LL P+R+
Sbjct: 6 LCESCLRLGWTHPTKIQREAIPLALEGKDIIGLAETGSGKTGAFALPVLQTLLDNPQRLY 65
Query: 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 128
A L++TPTRELA Q+ E + I+C ++VGG+ Q AL P IV+ATPG
Sbjct: 66 A---LVITPTRELAFQISEQFEALGSSIGIKCAVIVGGVDLMTQSLALTKKPHIVIATPG 122
Query: 129 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 188
R++DHL N+ L L LI+DEADR+L + F E+++++++ PK R T LFSAT+T+
Sbjct: 123 RLVDHLENTKGFSLRSLKYLIMDEADRILNMDFEEEVNKILKVIPKERSTYLFSATMTKK 182
Query: 189 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSKTFTSKVI 247
V +L + SL P+++ + L + + I + ++ ++L L +F I
Sbjct: 183 VAKLQRASLKNPVKVEVSTKFQTVEKLQQSYIFIPNKFKDCYLVSILNDLAGNSF----I 238
Query: 248 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 307
IF GT R+ +L A LHG +TQA+RL AL ++ + LIATDVA+RGL
Sbjct: 239 IFCGTCNNVQRVCLLLRHLGFHAVPLHGQMTQAKRLGALNKYKSKSRTILIATDVASRGL 298
Query: 308 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 367
DI V VIN+ P Y+HRVGRTARAGR G ++TFVT D L + I + G KL
Sbjct: 299 DIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLIGKKLP 358
Query: 368 SRIVAEQSI 376
+ E+ +
Sbjct: 359 LHPMVEEEV 367
>gi|365760375|gb|EHN02100.1| Rrp3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 503
Score = 288 bits (737), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 163/404 (40%), Positives = 232/404 (57%), Gaps = 7/404 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNL L++AC+ L YSKPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L RL
Sbjct: 87 ELNLVPELIQACKNLNYSKPTPIQSKSIPPALKGHDIIGLAQTGSGKTAAFAIPILNRLW 146
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + A IL PTRELA Q+ + + +R +VGG++ Q L P
Sbjct: 147 HDQEPYYAC---ILAPTRELAQQIKEAFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 203
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQTML 180
I++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R T L
Sbjct: 204 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 263
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L ++
Sbjct: 264 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQALMVVPGGL---KNTYLIYLLNE 320
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+ +IIF+ TK A RL L L A LHG+L Q QR+ AL+LF+ L+AT
Sbjct: 321 SIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVAT 380
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V V+NY P D SY+HRVGRTARAGR G +++ V+ D L+ I +
Sbjct: 381 DVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 440
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 404
G KL V + I +++ +V + +E+I R
Sbjct: 441 VLGRKLPKENVDKSIILTLRDSVDKANGEVVMEMNRRNKEKIAR 484
>gi|429852313|gb|ELA27456.1| ATP-dependent rRNA helicase rrp3 [Colletotrichum gloeosporioides
Nara gc5]
Length = 476
Score = 288 bits (737), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 156/366 (42%), Positives = 216/366 (59%), Gaps = 7/366 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L+ AC+ LGY+ PTPIQA IP AL RD+ G A TGSGKTAAFALP ++ LL
Sbjct: 57 DLGIVDSLVEACDRLGYTNPTPIQAQSIPHALQNRDVIGLAETGSGKTAAFALPIIQALL 116
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P + L+L PTRELA Q+ + E + ++R ++VGGL Q AL P
Sbjct: 117 DKPSHLFG---LVLAPTRELAAQIAASFEALGSLVNLRVAVIVGGLDMVAQAIALGKKPH 173
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IVVATPGR++DHL + L L L++DEADRLL++ F I ++++ P+ R+T LF
Sbjct: 174 IVVATPGRLVDHLEKTKGFSLRSLKYLVMDEADRLLDMDFGPSIDKILKFIPRERRTFLF 233
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT++ ++ L + SL P+R+S S+ + STL + + + ++ L+ L ++
Sbjct: 234 SATMSSKIESLQRASLRDPVRISISSSSHQTVSTLIQNYIFCPHNK---KDTYLVYLVNE 290
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K+++F+ T RL IL A +HG L Q RL AL FR D L+AT
Sbjct: 291 YSGKKIVLFTRTVTETQRLAILLRTLGFGAIPIHGQLNQTARLGALNKFRAGSRDILVAT 350
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V VIN+ P D +YVHRVGRTARAG+ G A+T +T D + I
Sbjct: 351 DVAARGLDIPLVDVVINFDIPSDSKTYVHRVGRTARAGKSGKAITIMTQYDLEIYLRIEA 410
Query: 361 RAGSKL 366
G KL
Sbjct: 411 ALGKKL 416
>gi|37362659|ref|NP_011932.2| RNA-dependent ATPase RRP3 [Saccharomyces cerevisiae S288c]
gi|81175193|sp|P38712.2|RRP3_YEAST RecName: Full=ATP-dependent rRNA helicase RRP3; AltName:
Full=Ribosomal RNA-processing protein 3
gi|285809971|tpg|DAA06758.1| TPA: RNA-dependent ATPase RRP3 [Saccharomyces cerevisiae S288c]
gi|392298867|gb|EIW09962.1| Rrp3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 501
Score = 288 bits (736), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 162/404 (40%), Positives = 231/404 (57%), Gaps = 7/404 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNL L++AC+ L YSKPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L RL
Sbjct: 85 ELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLW 144
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + A IL PTRELA Q+ + + +R +VGG++ Q L P
Sbjct: 145 HDQEPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 201
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQTML 180
I++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R T L
Sbjct: 202 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 261
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L ++
Sbjct: 262 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL---KNTYLIYLLNE 318
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+IIF+ TK A RL L L A LHG+L Q QR+ +L+LF+ L+AT
Sbjct: 319 FIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVAT 378
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V V+NY P D SY+HRVGRTARAGR G +++ V+ D L+ I +
Sbjct: 379 DVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 438
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 404
G KL V + I +++ +V + +E+I R
Sbjct: 439 VLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIAR 482
>gi|487961|gb|AAB68392.1| Yhr065cp [Saccharomyces cerevisiae]
Length = 543
Score = 288 bits (736), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 162/404 (40%), Positives = 231/404 (57%), Gaps = 7/404 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNL L++AC+ L YSKPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L RL
Sbjct: 127 ELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLW 186
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + A IL PTRELA Q+ + + +R +VGG++ Q L P
Sbjct: 187 HDQEPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 243
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQTML 180
I++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R T L
Sbjct: 244 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 303
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L ++
Sbjct: 304 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL---KNTYLIYLLNE 360
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+IIF+ TK A RL L L A LHG+L Q QR+ +L+LF+ L+AT
Sbjct: 361 FIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVAT 420
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V V+NY P D SY+HRVGRTARAGR G +++ V+ D L+ I +
Sbjct: 421 DVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 480
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 404
G KL V + I +++ +V + +E+I R
Sbjct: 481 VLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIAR 524
>gi|261194144|ref|XP_002623477.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis
SLH14081]
gi|239588491|gb|EEQ71134.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis
SLH14081]
Length = 465
Score = 288 bits (736), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 156/350 (44%), Positives = 209/350 (59%), Gaps = 22/350 (6%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L ACE LGY PTPIQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+
Sbjct: 60 DLGIIDSLCEACETLGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALM 119
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ ++ LIL PTRELA Q+ E + +RC ++VGG+ Q AL P
Sbjct: 120 EKPQ---SLFGLILAPTRELAYQISGAFEALGSLISVRCAVIVGGMDMVPQAIALGKKPH 176
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IVVATPGR++DHL N+ L +L L++DEADRLL+L F + +++++ P+ R+T LF
Sbjct: 177 IVVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYLF 236
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++ V+ L + SL+ LRL PS + + + R+ +N+ A
Sbjct: 237 SATMSSKVESLQRASLSSGLRL--------PSFIPTNIKTLPRL-SLNEYA--------- 278
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
I+F+ T RL IL A LHG L+Q+ RL AL FR + D L+ATD
Sbjct: 279 -GQSAIVFTRTVNETQRLAILLRALGFGAIPLHGQLSQSSRLGALSKFRSRSRDILVATD 337
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
VAARGLDI V V+N+ P D +Y+HRVGRTARAG+ G+A VT D
Sbjct: 338 VAARGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFNIVTQYD 387
>gi|169609619|ref|XP_001798228.1| hypothetical protein SNOG_07902 [Phaeosphaeria nodorum SN15]
gi|143462316|sp|Q0UK12.2|RRP3_PHANO RecName: Full=ATP-dependent rRNA helicase RRP3
gi|160701880|gb|EAT84178.2| hypothetical protein SNOG_07902 [Phaeosphaeria nodorum SN15]
Length = 546
Score = 287 bits (735), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 156/382 (40%), Positives = 223/382 (58%), Gaps = 8/382 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L ACE LGY TPIQ IPLAL G+DI G A TGSGKTAAF LP L+ LL
Sbjct: 119 DLGVREELCDACENLGYKTATPIQTESIPLALAGKDIIGLAETGSGKTAAFVLPILQALL 178
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ A LI+ PTRELA Q+ ++ + +++C +VGG+ Q AL P
Sbjct: 179 DKPQ---AYFGLIMAPTRELAYQISQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPH 235
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR-RQTML 180
I+VA+PGR++DHL N+ L L L+LDEADRLL+L F + ++ ++ P+ R T L
Sbjct: 236 IIVASPGRLLDHLENTKGFSLKHLKYLVLDEADRLLDLDFGDSLDKIFKVLPRDDRHTYL 295
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCS 239
FSAT++ V+ L + +L P+R+S S+ + STL + + I ++ L+ L +
Sbjct: 296 FSATMSSKVESLQRAALKNPVRVSISSSSHQVVSTLLQSYMLIPHKY---KDLYLIHLLN 352
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
I+F+ T RL +L +A LHG L+Q+ RL AL F+ + D L+A
Sbjct: 353 DNIGHATILFTRTVNETQRLAVLLRTLGFQALPLHGQLSQSNRLGALNKFKAKARDILVA 412
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVAARGLDI V V+N+ P D +YVHRVGRTARAG+ G AV+FVT D + + I
Sbjct: 413 TDVAARGLDIPSVDLVVNFDLPHDSETYVHRVGRTARAGKSGKAVSFVTQYDLEIFQRIE 472
Query: 360 KRAGSKLKSRIVAEQSITKWSK 381
G ++ V+ + +++
Sbjct: 473 HALGKQVPEEKVSRDEVMVYAE 494
>gi|358060304|dbj|GAA94058.1| hypothetical protein E5Q_00705 [Mixia osmundae IAM 14324]
Length = 447
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 154/364 (42%), Positives = 206/364 (56%), Gaps = 6/364 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L PL + CE LGY KP+ IQA IP AL GRD+ A TGSGKTAAFALP L+ L
Sbjct: 17 LGLIEPLCKVCEQLGYKKPSEIQAQSIPFALQGRDLVALAQTGSGKTAAFALPILQALWN 76
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P A +L PTRELA Q+ + + +RC ++VGG+ Q AL P I
Sbjct: 77 EPSPFFAC---VLAPTRELAYQISEQFQALGSTIGVRCAVIVGGMDMMTQSIALSKRPHI 133
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+VATPGR+ DHL N+ L + L++DEADRLL++ F I ++++ P+ R T LFS
Sbjct: 134 IVATPGRLQDHLENTKGFSLKAIKYLVMDEADRLLDMDFGPVIDTILKIIPRERNTFLFS 193
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T V +L + SL+ P+++ TL +E ++E L+ LC++
Sbjct: 194 ATMTTKVAKLQRASLSNPVKVEVSTKYSTVDTLVQEYCFFPFK---HKETYLVYLCNELA 250
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+I+F T A RL ++ A LHG LTQ+ RL AL F+ L+ATDV
Sbjct: 251 GKSIIVFVRTVHDAQRLSLILRTLGFPAVPLHGQLTQSNRLGALNKFKSGGRQILVATDV 310
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI V V+NY P Y+HRVGRTARAGR G ++T VT D LL+ I
Sbjct: 311 ASRGLDIPMVDYVVNYDIPTHSKDYIHRVGRTARAGRSGKSITLVTQYDVELLQRIEGVV 370
Query: 363 GSKL 366
G K+
Sbjct: 371 GKKM 374
>gi|403412636|emb|CCL99336.1| predicted protein [Fibroporia radiculosa]
Length = 974
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 164/365 (44%), Positives = 211/365 (57%), Gaps = 6/365 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L PLL A E L + PT IQ +P AL GRDI G A TGSGKTAAFALP L++L
Sbjct: 542 LGLIDPLLEALEQLNFKHPTDIQVEALPHALQGRDIIGVASTGSGKTAAFALPILQKLWE 601
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
PK + A +L PTRELA Q+ E + +RC +VGGL Q AL P I
Sbjct: 602 EPKGLFAC---VLAPTRELAYQISQQFEGLGSAMGVRCVTIVGGLDMMAQSVALAKRPHI 658
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
VVATPGR+IDHL N+ L L L+LDEADRLL++ F I +++++ PK R T LFS
Sbjct: 659 VVATPGRLIDHLENTKGFSLRGLKFLVLDEADRLLDMDFGPIIDKILKIIPKERTTYLFS 718
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T V +L + SL+ P+R+ STL + + I V ++ L+ L +
Sbjct: 719 ATMTTKVAKLQRASLSNPVRVEVSEKYSTVSTLLQYYLFIPL---VQKDVHLIYLANTLA 775
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+ +IIF+ T A RL I+ A LHG L+Q+ RL AL F+ L+ATDV
Sbjct: 776 QNSIIIFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSARLGALGKFKSGGRKILVATDV 835
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI V VINY P Y+HRVGRTARAGR G +VT VT D L++ I
Sbjct: 836 ASRGLDIPHVDVVINYDIPTHSKDYIHRVGRTARAGRSGKSVTLVTQYDVELIQRIETTI 895
Query: 363 GSKLK 367
G K++
Sbjct: 896 GKKME 900
>gi|390167359|ref|ZP_10219350.1| putative helicase [Sphingobium indicum B90A]
gi|389590061|gb|EIM68066.1| putative helicase [Sphingobium indicum B90A]
Length = 461
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 150/367 (40%), Positives = 219/367 (59%), Gaps = 6/367 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ P+LRA A Y PTPIQA IP+ L G+D+CG A TG+GKTAAFALP+L+
Sbjct: 5 DLGLAEPILRALAAKKYGSPTPIQAQAIPVLLKGKDLCGIAQTGTGKTAAFALPSLDHFA 64
Query: 62 YRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
PK P R+L+L+PTRELA Q+ +F + +V GG+ Q AL
Sbjct: 65 RNPKPTPLQGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVEVVFGGVPINRQIRALGRG 124
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
DIVVATPGR++D L + + + D + +LDEAD+++++GF + + +L PK RQ +
Sbjct: 125 VDIVVATPGRLLD-LIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPKERQNL 183
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
FSAT+ +++ L L P+++S P + + ++ + +M ++A+L
Sbjct: 184 FFSATMPGEIEALASQFLHDPVKVSVAPQSTTAERVRQQATFVNQM---EKQALLNLTIQ 240
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+ +IF+ TK A R+ A ++A +HGN +QAQR AL+ FR HV L+A
Sbjct: 241 NEDIDRALIFTRTKHGADRVVRFLEGAGIQAVAIHGNKSQAQRTTALQAFRHGHVKLLVA 300
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TD+AARG+D+ GV VIN+ P YVHR+GRTARAG EG A++FV D++R LKAI
Sbjct: 301 TDIAARGIDVSGVSHVINFELPNVPEQYVHRIGRTARAGAEGVAISFVADDERPYLKAIE 360
Query: 360 KRAGSKL 366
+ KL
Sbjct: 361 RTTKVKL 367
>gi|449547391|gb|EMD38359.1| hypothetical protein CERSUDRAFT_49063 [Ceriporiopsis subvermispora
B]
Length = 447
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 161/365 (44%), Positives = 212/365 (58%), Gaps = 6/365 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L PLL A + L Y+ PT IQA +P AL GRDI G A TGSGKTAAFALP L++L
Sbjct: 18 LGLIEPLLEAVDQLHYTTPTEIQAEVLPHALQGRDIIGVAATGSGKTAAFALPILQKLWE 77
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
PK + A ++ PTRELA Q+ E + +RC +VGG+ Q AL P I
Sbjct: 78 EPKGLFAC---VMAPTRELAYQISQQFESLGSAIGVRCATIVGGMPIMDQAVALAKRPHI 134
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
VVATPGR+ DHL N+ L L L++DEADRLL++ F I +++++ PK R T LFS
Sbjct: 135 VVATPGRLNDHLENTKGFSLRGLKFLVMDEADRLLDMDFGPIIDKILKVIPKERTTYLFS 194
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T V +L + SL+ P+R+ STL + + I V ++ L+ L +
Sbjct: 195 ATMTTKVAKLQRASLSNPVRVEVSEKYSTVSTLLQYYLFIPL---VQKDVHLIYLANSLA 251
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+ +IIF+ T A RL I+ A LHG L+Q+ RL AL F+ L+ATDV
Sbjct: 252 QNSIIIFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSARLGALGKFKSGGRKVLVATDV 311
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI V VINY P Y+HRVGRTARAGR G +VT VT D L++ I
Sbjct: 312 ASRGLDIPSVDVVINYDIPTHSKDYIHRVGRTARAGRSGKSVTLVTQYDVELVQRIEATI 371
Query: 363 GSKLK 367
G K++
Sbjct: 372 GKKME 376
>gi|296824198|ref|XP_002850600.1| ATP-dependent rRNA helicase RRP3 [Arthroderma otae CBS 113480]
gi|238838154|gb|EEQ27816.1| ATP-dependent rRNA helicase RRP3 [Arthroderma otae CBS 113480]
Length = 474
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 158/366 (43%), Positives = 220/366 (60%), Gaps = 7/366 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L AC +L Y PTPIQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+
Sbjct: 53 DLGIIDSLCDACTSLRYKAPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALM 112
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ P L+L PTRELAVQ+ E + +RC ++VGG+ Q +L P
Sbjct: 113 EKPQ--PYFG-LVLAPTRELAVQISEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPH 169
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L +L L++DEADRLL+L F + +++++ P+ R+T LF
Sbjct: 170 IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLF 229
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSK 240
SATL+ V+ L + SL+ PLR+S + + STL + + I ++ L+ + ++
Sbjct: 230 SATLSSKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHK---YKDVYLVHILNE 286
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
IIF+ T RL IL A LHG L+Q+ RL AL FR + L+AT
Sbjct: 287 FPGQSTIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRNILVAT 346
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V V+N+ P D +Y+HRVGRTARAGR G A++ VT + + + I
Sbjct: 347 DVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGRSGRAISIVTQYEVEIWQRIEV 406
Query: 361 RAGSKL 366
G +L
Sbjct: 407 ALGKQL 412
>gi|94498979|ref|ZP_01305517.1| DEAD/DEAH box helicase-like protein [Bermanella marisrubri]
gi|94428611|gb|EAT13583.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
Length = 457
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 149/368 (40%), Positives = 228/368 (61%), Gaps = 6/368 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ P+++A GY+ PTPIQA IP L+GRD+ +A TG+GKTA F LP L++LL
Sbjct: 5 DLALAEPIVKAIAEQGYTSPTPIQAQGIPAVLSGRDLLAAAQTGTGKTAGFTLPILQKLL 64
Query: 62 YRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
PK + RVL+LTPTRELA QV + +++T IR +V GG+ Q LR
Sbjct: 65 DAPKGVKPNQARVLVLTPTRELAAQVQDNVATYSKYTKIRSEVVFGGVKINPQMQRLRRG 124
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
DI+VATPGR++D L N ++ D L LILDEADR+L++GF +I +++RL PK+RQ +
Sbjct: 125 VDILVATPGRLLD-LHNQNAIHFDQLDTLILDEADRMLDMGFINDIRKIMRLLPKKRQNL 183
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
+FSAT ++ + L K + P+ +S P + + ++ + + +++N +L+ L +
Sbjct: 184 MFSATFSDKIRALAKTIVENPVEVSVTPKNTTAKKVRQSIIAVDKKQKIN---LLIDLLA 240
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
K +V++FS TK A+++ A + AA +HGN +Q R AL F+ + L+A
Sbjct: 241 KEKWHQVLVFSRTKHGANKIAKQLSDADIPAAAIHGNKSQGARTRALADFKSNDIQVLVA 300
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TD+AARG+DI + VIN+ P +YVHR+GRTARAG +G A++FV+ ++ LL I
Sbjct: 301 TDIAARGIDIDQLPHVINFDLPNVAENYVHRIGRTARAGSDGDALSFVSIDEIDLLADIQ 360
Query: 360 KRAGSKLK 367
G ++
Sbjct: 361 NFIGEPIE 368
>gi|440638773|gb|ELR08692.1| ATP-dependent rRNA helicase rrp3 [Geomyces destructans 20631-21]
Length = 485
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 152/350 (43%), Positives = 210/350 (60%), Gaps = 5/350 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L ACE+LGY PTPIQ IP AL GRD+ G A TGSGKTAAFALP L+ LL
Sbjct: 63 DLGVIDSLCEACESLGYKSPTPIQQESIPPALAGRDLIGLAETGSGKTAAFALPILQALL 122
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + L+L PTRELA Q+ E + +RC ++VGG+ Q AL P
Sbjct: 123 DKPQPLFG---LVLAPTRELAYQISKSFEGLGILISVRCAVIVGGMDMVTQSIALGKKPH 179
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L L L++DEADRLL+L F + +++++ P+ R+T LF
Sbjct: 180 IIVATPGRLLDHLENTKGFSLRALKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYLF 239
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++ V+ L + SL PLR+ S + T++ + + +++ L+ L +
Sbjct: 240 SATMSSKVESLQRASLRDPLRVQI--STNKYQTVSTLLQSYLFIPHPHKDTYLIYLLNDF 297
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
I+F+ T RL IL A LHG L+Q+ RL AL FR + L+ATD
Sbjct: 298 AGQSAIVFTRTVNETQRLAILLRTLGFGAIPLHGQLSQSARLGALNKFRAGSREILVATD 357
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
VAARGLDI V V+NY P D +Y+HRVGRTARAG+ G+A++ VT D
Sbjct: 358 VAARGLDIPSVDVVLNYDLPPDSKTYIHRVGRTARAGKSGHAISIVTQYD 407
>gi|451996880|gb|EMD89346.1| hypothetical protein COCHEDRAFT_1141477 [Cochliobolus
heterostrophus C5]
Length = 518
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 156/372 (41%), Positives = 219/372 (58%), Gaps = 8/372 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L ACE L ++ PTPIQA IPLAL GRD+ G A TGSGKTAAF LP L+ LL
Sbjct: 93 DLGVREELCDACENLKFTNPTPIQAQAIPLALQGRDVIGLAETGSGKTAAFVLPILQALL 152
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + + LIL PTRELA Q+ ++ + +++C +VGG+ Q AL P
Sbjct: 153 EKQQSLFG---LILAPTRELAYQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKKPH 209
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR-RQTML 180
I+VATPGR++DHL N+ L L ++LDEADRLL+L F + +++++ P+ R T L
Sbjct: 210 IIVATPGRLLDHLENTKGFSLKHLKYMVLDEADRLLDLDFGPVLDKILKVLPREGRHTYL 269
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCS 239
FSAT++ V+ L + +L P+R+S S+ + STL + + + ++ L+ L +
Sbjct: 270 FSATMSSKVESLQRAALQNPVRVSISSSSHQVVSTLLQRYIFLPHKY---KDLYLIHLLN 326
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
IIFS T R+ IL A LHG L+Q+ RL AL F+ Q D L+A
Sbjct: 327 DNIGHPTIIFSRTVNETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFKTQSRDILVA 386
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVAARGLDI V V+N+ P D +YVHRVGRTARAG+ G AV+FVT D + I
Sbjct: 387 TDVAARGLDIPAVDLVVNFDLPSDSQTYVHRVGRTARAGKSGKAVSFVTQYDLEIWLRIE 446
Query: 360 KRAGSKLKSRIV 371
G ++ ++
Sbjct: 447 NALGKQIPEEVI 458
>gi|170094690|ref|XP_001878566.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647020|gb|EDR11265.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 453
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 160/365 (43%), Positives = 215/365 (58%), Gaps = 6/365 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L PLL A E +GY PT IQ +P AL GRDI G A TGSGKTAAFALP L++L
Sbjct: 22 LGLIDPLLEALEQVGYKTPTDIQVESLPHALEGRDIIGVASTGSGKTAAFALPILQKLWE 81
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
PK + A +L PTRELA Q+ E + RC ++VGG+ Q AL P I
Sbjct: 82 DPKGLFAC---VLAPTRELAYQISQQFESLGSAMGARCAVIVGGMDMPAQAIALAKRPHI 138
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
VVATPGR++ HL + L + L+LDEADRLL+L F A I +++++ PK R T LFS
Sbjct: 139 VVATPGRLMQHLEETKGFSLRSIKFLVLDEADRLLDLDFGASIDKILKVIPKERTTYLFS 198
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T V +L + SL+ P+R+ + STL + + M +++A L+ L +
Sbjct: 199 ATMTTKVAKLQRASLSNPVRIEVSSKYQTVSTLLQYYL---LMPLKDKDAYLIYLINSLA 255
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+ +I+F+ T A RL I+ A LHG L+Q+QRL AL F+ L+ATDV
Sbjct: 256 QNSIIMFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSQRLGALGKFKSGGRRVLVATDV 315
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI V VIN+ P Y+HRVGRTARAGR G ++T VT D L++ I +
Sbjct: 316 ASRGLDIPSVDIVINFDIPTHSKDYIHRVGRTARAGRAGKSITLVTQYDVELVQRIEQVV 375
Query: 363 GSKLK 367
G K++
Sbjct: 376 GKKME 380
>gi|365984991|ref|XP_003669328.1| hypothetical protein NDAI_0C04250 [Naumovozyma dairenensis CBS 421]
gi|343768096|emb|CCD24085.1| hypothetical protein NDAI_0C04250 [Naumovozyma dairenensis CBS 421]
Length = 504
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 160/402 (39%), Positives = 229/402 (56%), Gaps = 7/402 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNL L++AC+ L YSKPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L L
Sbjct: 88 ELNLVPELIQACKNLNYSKPTPIQSKSIPPALKGHDIIGLAQTGSGKTAAFAIPILNSLW 147
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + A IL PTRELA Q+ + + +R +VGG++ Q L P
Sbjct: 148 HDQQPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSVCIVGGMNMMDQARDLMRKPH 204
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR-RQTML 180
+++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R T L
Sbjct: 205 VIIATPGRLMDHLENTKGFSLRKLKYLVMDEADRLLDMEFGPVLDRILKILPTQGRTTYL 264
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L ++
Sbjct: 265 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLIVVPGGL---KNTFLIYLLNE 321
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
IIF+ TK A R+ L L A LHG+L Q QR AL+LF+ L+AT
Sbjct: 322 YIGKSTIIFTRTKANAERISGLCNLLEFNATALHGDLNQNQRTGALDLFKAGRKTILVAT 381
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V VINY P D SY+HRVGRTARAGR G +++ V+ D L+ I +
Sbjct: 382 DVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 441
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERI 402
G KL V ++ I +++ + +V L +E++
Sbjct: 442 VLGKKLPKETVDKEMILTLRDSVDKADGEVIMELNRRNKEKV 483
>gi|445499097|ref|ZP_21465952.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
gi|444789092|gb|ELX10640.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
Length = 550
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 155/365 (42%), Positives = 221/365 (60%), Gaps = 11/365 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ LS +LRA GY PTPIQA IP+ L GRD+ G+A TG+GKTA FALP ++ LL
Sbjct: 69 DFGLSPHILRALTDQGYVHPTPIQAQAIPVLLQGRDVMGAAQTGTGKTAGFALPIIQMLL 128
Query: 62 YR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
P R P +R LILTPTRELAVQV ++ AQ T +R +V GG+ K Q
Sbjct: 129 AHASTSTSPARHP-VRALILTPTRELAVQVAENVKAYAQHTPLRSTVVFGGMDMKGQTVI 187
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
L++ +IV+ATPGR++DH+ ++ L + +L++DEADR+L++GF ++ ++ L P +
Sbjct: 188 LKAGVEIVIATPGRLLDHVEQK-NISLGQVQMLVMDEADRMLDMGFLPDLQRIINLLPAK 246
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQ ++FSAT + ++ +L LT P+ + S + +T+ V ++ E + A+
Sbjct: 247 RQNLMFSATFSPEIKKLANTFLTNPVTIEVARSNQTADKVTQVVYKVP---ENQKHALTA 303
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
L + +VIIFS TK A RL +KA +HG+ TQ +R+ ALE F+K +D
Sbjct: 304 HLLRQRELKQVIIFSNTKIGASRLAKGLEQEGMKAVAIHGDKTQQERMAALESFKKGEID 363
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARGLDI + VINY P + YVHR+GRT RAG G A++ +D D LL
Sbjct: 364 ILVATDVAARGLDITDLPCVINYDLPYNAEDYVHRIGRTGRAGASGDALSIYSDKDERLL 423
Query: 356 KAIAK 360
I K
Sbjct: 424 ADIEK 428
>gi|391344138|ref|XP_003746360.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Metaseiulus occidentalis]
Length = 461
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 161/377 (42%), Positives = 223/377 (59%), Gaps = 9/377 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL + L ACEAL + P+ IQ IP+AL GRDI G A TGSGKTAAFALP L+ LL
Sbjct: 34 ELGVVDVLCEACEALKWRTPSKIQKEAIPVALQGRDIIGLAETGSGKTAAFALPILQALL 93
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P R+ A LILTPTRELA Q+ E + I+ ++VGG+ Q L P
Sbjct: 94 ENPARLFA---LILTPTRELAFQISEQFEALGSTIGIKSAVIVGGIDMMTQAMMLAKKPH 150
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK-RRQTML 180
+V+ATPGR+IDHL N+ L +L L++DEADR+L + F E+ +++++ P+ R+T L
Sbjct: 151 VVIATPGRLIDHLENTKGFTLKNLRYLVMDEADRILNMDFEEEVDKILKVIPRENRRTYL 210
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCS 239
+SAT+T+ V +L + SLT P+R+ + L + + I + +EV+ +L L
Sbjct: 211 YSATMTKKVAKLQRASLTDPVRVEVSTKYQTVDKLQQYYLFIPAKYKEVHLVHLLQDLAG 270
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
++F I+F T +L ++ A LHG ++QA+RL AL+ F+ Q + L+A
Sbjct: 271 QSF----IVFCATCNGTQKLALMLRNLGFTAIPLHGQMSQAKRLGALQKFKAQARNILLA 326
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVAARGLDI V VINY P Y+HRVGRTARAGR G AVTFV+ D L + I
Sbjct: 327 TDVAARGLDIPHVDVVINYDIPTHSKDYIHRVGRTARAGRSGKAVTFVSQYDVELYQRIE 386
Query: 360 KRAGSKLKSRIVAEQSI 376
G +L V E+ +
Sbjct: 387 HLIGKQLPKYDVLEREV 403
>gi|345318725|ref|XP_003430052.1| PREDICTED: probable ATP-dependent RNA helicase ddx27-like, partial
[Ornithorhynchus anatinus]
Length = 571
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 153/381 (40%), Positives = 225/381 (59%), Gaps = 15/381 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E L R +L+ LG+S PT IQ IP+AL G DI ++ TGSGKTAAF +P ++RLL
Sbjct: 176 EFKLHRLILKGIFELGFSYPTKIQCEVIPVALRGLDIIATSETGSGKTAAFLIPLVQRLL 235
Query: 62 ------------YRPKRIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 108
Y + ++ L+L PTREL Q +++ K+ + + ++ GG+
Sbjct: 236 ASCSLRHQIRQNYGKHAVYNEVKALVLFPTRELTSQCYAVFLKLTTYVSVESSMLTGGIP 295
Query: 109 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 168
K QE LR P+IV +TPGR +D NS + + ++I DEADRLL++GF E +
Sbjct: 296 LKEQEAQLRCAPEIVFSTPGRTLDIFLNSSCIHSGSIEIVIFDEADRLLDMGFKDECISI 355
Query: 169 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREV 228
++ C RQ MLFSATL+ + L+ L+L P+ +S + ++L+ E ++ E
Sbjct: 356 LKCCNVERQIMLFSATLSNETKNLVSLALKSPVYISISNPSLTVASLSLEFYTLQC--EA 413
Query: 229 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALEL 288
++EA +L LC K TS+ I+F TK AAHR+ +LF + ++ ELHGNL+Q QR ++E
Sbjct: 414 DREAAVLYLCDKICTSRTILFFQTKVAAHRMSLLFNILQMENCELHGNLSQDQRYTSVER 473
Query: 289 FRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 348
F++ V FL+A+++A+RGLDI V VIN P D+ YVHRVGRTAR G G A+T T
Sbjct: 474 FKRGDVSFLLASELASRGLDIPSVHAVINVNIPFDVVRYVHRVGRTARMGSVGKAITLFT 533
Query: 349 DNDRSLLKAIAKRAGSKLKSR 369
N++ LK I K + + R
Sbjct: 534 KNEKPRLKKILKESSDGITLR 554
>gi|409082704|gb|EKM83062.1| hypothetical protein AGABI1DRAFT_33446 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426200570|gb|EKV50494.1| hypothetical protein AGABI2DRAFT_64060 [Agaricus bisporus var.
bisporus H97]
Length = 453
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 161/374 (43%), Positives = 220/374 (58%), Gaps = 6/374 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L +PLL + E L + PT IQ +P AL GRDI G A TGSGKTAAF LP L++L
Sbjct: 22 LGLIKPLLESLEQLNFKIPTEIQVEALPHALEGRDIIGVAATGSGKTAAFGLPILQKLWE 81
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
PK + A +L PTRELA Q+ +E + RC ++VGG+ Q AL P I
Sbjct: 82 EPKGLFAC---VLAPTRELAYQISQQLESLGSAMGARCAVIVGGMDMPAQAIALAKRPHI 138
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
VVATPGR++DHL + +L ++ L+LDEADRLL+L F I ++++L PK R T LFS
Sbjct: 139 VVATPGRLMDHLEKTKGFNLRNIKFLVLDEADRLLDLDFGTIIDKILKLIPKERTTYLFS 198
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T V +L + SL+ P+R+ + STL + + M +++A L+ L +
Sbjct: 199 ATMTTKVAKLQRASLSNPVRVEVSTKYQTVSTLLQYYL---LMPLKDKDAYLVYLANTLA 255
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+ +IIF+ T A RL I+ A LHG L+Q+QRL AL F+ L+ATDV
Sbjct: 256 QNSIIIFTRTVHDASRLSIILRTLGFPAVPLHGQLSQSQRLGALGQFKSGGRRVLVATDV 315
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI V VIN+ P Y+HRVGRTARAGR G ++T VT D L++ I +
Sbjct: 316 ASRGLDIPSVDVVINFDIPTHSKDYIHRVGRTARAGRAGKSITLVTQYDVELVQRIEQVI 375
Query: 363 GSKLKSRIVAEQSI 376
G K++ +Q I
Sbjct: 376 GKKMELWPTDDQEI 389
>gi|169854086|ref|XP_001833720.1| ATP-dependent rRNA helicase RRP3 [Coprinopsis cinerea okayama7#130]
gi|116505187|gb|EAU88082.1| ATP-dependent rRNA helicase RRP3 [Coprinopsis cinerea okayama7#130]
Length = 455
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 162/366 (44%), Positives = 213/366 (58%), Gaps = 6/366 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L PLL A E +GY PT IQ+ +P AL GRDI G A TGSGKTAAFALP L++L
Sbjct: 24 LGLIDPLLEALEQVGYKSPTEIQSESLPHALEGRDIIGVAETGSGKTAAFALPILQKLWE 83
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
PK + A +L PTRELA Q+ E + RC ++VGG+ Q AL P +
Sbjct: 84 EPKGLFAC---VLAPTRELAYQISQQFEALGAAMGARCAVIVGGMDLPTQAIALAKRPHV 140
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
VVATPGR++ HL + L L L+LDEADRLL++ F I ++++L PK R T LFS
Sbjct: 141 VVATPGRLLQHLEETKGFSLRTLKFLVLDEADRLLDMDFGPAIDKILKLIPKERTTYLFS 200
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T V +L + SL P+R+ + STL + + + +V +L+ L +
Sbjct: 201 ATMTSKVAKLQRASLVNPVRVEVSGKYQTVSTLLQHYLLVPLKDKV---VMLIYLANSLA 257
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+ +IIF+ T + A L I+ A LHG L+Q+QRL AL F+ L+ATDV
Sbjct: 258 QNSIIIFTRTVRDARLLSIILRTLGFPAVPLHGQLSQSQRLGALGKFKSGGRKILVATDV 317
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI V VINY P Y+HRVGRTARAGR G A+T VT D LL+ I K
Sbjct: 318 ASRGLDIPSVDVVINYDIPTHSKDYIHRVGRTARAGRAGKAITLVTQYDVELLQRIEKVI 377
Query: 363 GSKLKS 368
G K+ +
Sbjct: 378 GKKMDA 383
>gi|401625423|gb|EJS43432.1| rrp3p [Saccharomyces arboricola H-6]
Length = 500
Score = 285 bits (730), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 162/404 (40%), Positives = 231/404 (57%), Gaps = 7/404 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+LNL L++AC+ L YSKPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L RL
Sbjct: 84 QLNLVPELIQACKNLNYSKPTPIQSKSIPPALKGHDIIGLAQTGSGKTAAFAIPILNRLW 143
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + A IL PTRELA Q+ + + +R +VGG++ Q L P
Sbjct: 144 HDQEPYYAC---ILAPTRELAQQIKEAFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 200
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQTML 180
I++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R T L
Sbjct: 201 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 260
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L ++
Sbjct: 261 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL---KNTYLVYLLNE 317
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+IIF+ TK A RL L L A LHG+L Q QR+ AL+LF+ L+AT
Sbjct: 318 FIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRAILVAT 377
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V V+NY P D SY+HRVGRTARAGR G +++ V+ D L+ I +
Sbjct: 378 DVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 437
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 404
G KL V + I +++ +V + +E+I R
Sbjct: 438 VLGKKLPKENVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIAR 481
>gi|294012034|ref|YP_003545494.1| putative helicase [Sphingobium japonicum UT26S]
gi|292675364|dbj|BAI96882.1| putative helicase [Sphingobium japonicum UT26S]
Length = 461
Score = 285 bits (730), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 150/368 (40%), Positives = 223/368 (60%), Gaps = 8/368 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ P+L+A A Y+ PTPIQA IP+ L G+D+CG A TG+GKTAAFALP+L+
Sbjct: 5 DLGLAEPILKALAAKKYASPTPIQAQAIPVLLKGKDLCGIAQTGTGKTAAFALPSLDHFA 64
Query: 62 YRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
PK P R+L+L+PTRELA Q+ +F + +V GG+ Q AL
Sbjct: 65 RNPKPTPLQGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVEVVFGGVPINRQIRALGRG 124
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
DIVVATPGR++D L + + + D + +LDEAD+++++GF + + +L PK RQ +
Sbjct: 125 VDIVVATPGRLLD-LIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPKERQNL 183
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
FSAT+ +++ L L P+++S P + + ++ + +M ++ LL+L
Sbjct: 184 FFSATMPGEIEALASQFLHDPVKVSVAPQSTTAERVRQQATFVNQM----EKQALLNLTI 239
Query: 240 KT-FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
++ + +IF+ TK A R+ A ++A +HGN +QAQR AL+ FR HV L+
Sbjct: 240 RSEDIDRALIFTRTKHGADRVVRFLEGAGIQAVAIHGNKSQAQRTTALQAFRHGHVKLLV 299
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+AARG+D+ GV VIN+ P YVHR+GRTARAG EG A++FV D++R LKAI
Sbjct: 300 ATDIAARGIDVSGVSHVINFELPNVPEQYVHRIGRTARAGAEGVAISFVADDERPYLKAI 359
Query: 359 AKRAGSKL 366
+ KL
Sbjct: 360 ERTTKVKL 367
>gi|398406547|ref|XP_003854739.1| RNA-dependent ATPase [Zymoseptoria tritici IPO323]
gi|339474623|gb|EGP89715.1| hypothetical protein MYCGRDRAFT_84402 [Zymoseptoria tritici IPO323]
Length = 446
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 158/400 (39%), Positives = 232/400 (58%), Gaps = 5/400 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L AC ALG++KPT IQ IP+AL G+DI G A TGSGKTAAFALP L+ LL
Sbjct: 40 DLGVVDSLCEACTALGFTKPTAIQREAIPIALEGKDIIGLAETGSGKTAAFALPILQELL 99
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + L+L PTRELA Q+ E + +RC ++VGG+ Q AL P
Sbjct: 100 DKPQPMFG---LVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVPQAIALAKKPH 156
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IVVATPGR++DHL N+ L L L++DEADRLL+L F + ++ ++ P+ R+TMLF
Sbjct: 157 IVVATPGRLLDHLENTKGFSLRQLKYLVMDEADRLLDLDFGPILDKIFQVLPRERRTMLF 216
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++ ++ L + +L +P+++S S+ + T+ + R + ++ L+ L ++
Sbjct: 217 SATMSTKLNNLTRAALQQPVKVSISSSSYQ--TVKNLMQRYIFIPHKFKDIYLVYLLNEF 274
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
I+F+ T R+ L A LHG + Q+ RL AL FR H D L+ATD
Sbjct: 275 AGQTCIVFTRTINETARIAFLLRALGRSAIPLHGQMNQSARLGALNKFRGGHRDILVATD 334
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V V+N+ P D +YVHRVGRTARAG+ G A++ VT D + + I K
Sbjct: 335 VAARGLDIPSVDLVLNFDLPPDSKTYVHRVGRTARAGKSGVAISVVTQYDIEIYQRIEKA 394
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 401
G KL+ + ++ + + + ++ E E+R
Sbjct: 395 LGKKLEEHPTERDEVMVFAPRVGEAQRIAVTEMKNEHEKR 434
>gi|358399923|gb|EHK49260.1| hypothetical protein TRIATDRAFT_143973 [Trichoderma atroviride IMI
206040]
Length = 479
Score = 285 bits (729), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 157/366 (42%), Positives = 216/366 (59%), Gaps = 7/366 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL + L ACE+L Y PT IQA IP+AL GRD+ G A TGSGKTAAFALP L+ LL
Sbjct: 59 ELGIVDSLCEACESLNYKTPTSIQARSIPVALQGRDVIGLAETGSGKTAAFALPILQALL 118
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ L+L PTRELA Q+ E + +RC ++VGGL Q AL P
Sbjct: 119 EKPQPFFG---LVLAPTRELAAQIGQSFEALGALISLRCAVIVGGLDMVPQAIALGKKPH 175
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL + L L L++DEADRLL++ F I ++++ P+ R+T LF
Sbjct: 176 IIVATPGRLVDHLEKTKGFSLRSLKYLVMDEADRLLDMDFGPSIDKILKFIPRERRTYLF 235
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT++ V+ L + SL P R+S + + STL + V I R ++ L+ L ++
Sbjct: 236 SATMSSKVESLQRASLRDPARVSVSSNKYQTVSTLLQHYVFIPHKR---KDTYLIYLVNE 292
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+IIF+ T A R+ IL A LHG L+Q+ RL AL F+ + L+AT
Sbjct: 293 FAGKSIIIFTRTVFEAQRVAILLRTLGFGAIPLHGQLSQSARLGALNKFKGGSREILVAT 352
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V V+N+ P+D +Y+HRVGRTARAG+ G A++ T D + + I
Sbjct: 353 DVAARGLDIPAVDVVLNHDLPQDSKTYIHRVGRTARAGKSGIAISIATQYDLEIYQRIEA 412
Query: 361 RAGSKL 366
G +L
Sbjct: 413 ALGKEL 418
>gi|169768960|ref|XP_001818950.1| ATP-dependent rRNA helicase RRP3 [Aspergillus oryzae RIB40]
gi|91207780|sp|Q2UNB7.1|RRP3_ASPOR RecName: Full=ATP-dependent rRNA helicase rrp3
gi|83766808|dbj|BAE56948.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 472
Score = 285 bits (729), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 155/366 (42%), Positives = 215/366 (58%), Gaps = 7/366 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L L AC+++GY PT IQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+
Sbjct: 56 ELGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQALM 115
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P + L+L PTRELA Q+ E + +R ++VGG+ Q AL P
Sbjct: 116 DKPS---SFFGLVLAPTRELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIALGKKPH 172
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L +L L++DEADRLL++ F + +++++ P+ R+T LF
Sbjct: 173 IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKVLPRERRTYLF 232
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPS-AKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT++ V+ L + SL PLR++ S + STL + + I +++ L+ L ++
Sbjct: 233 SATMSSKVESLQRASLQNPLRVAVSSSKFQTVSTLQQSYIFIPHK---HKDLYLVYLLNE 289
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
IIF T RL L A LHG L+Q+ RL AL FR + D L+AT
Sbjct: 290 FVGQSCIIFCRTVHETQRLSFFLRLLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVAT 349
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V V+N+ P D +++HR+GRTARAG+ G A++F T D I
Sbjct: 350 DVAARGLDIPSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAISFATQYDVEAWLRIEG 409
Query: 361 RAGSKL 366
G KL
Sbjct: 410 ALGKKL 415
>gi|451847806|gb|EMD61113.1| hypothetical protein COCSADRAFT_192893 [Cochliobolus sativus
ND90Pr]
Length = 518
Score = 285 bits (728), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 155/372 (41%), Positives = 219/372 (58%), Gaps = 8/372 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L ACE L ++ PTPIQA IPLAL GRD+ G A TGSGKTAAF LP L+ LL
Sbjct: 93 DLGVREELCDACENLKFTNPTPIQAQAIPLALEGRDVIGLAETGSGKTAAFVLPILQALL 152
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + + LIL PTRELA Q+ ++ + +++C +VGG+ Q AL P
Sbjct: 153 EKQQSLFG---LILAPTRELAYQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKKPH 209
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR-RQTML 180
I+VATPGR++DHL N+ L L ++LDEADRLL+L F + +++++ P+ R T L
Sbjct: 210 IIVATPGRLLDHLENTKGFSLKHLKYMVLDEADRLLDLDFGPVLDKILKVLPREGRHTYL 269
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCS 239
+SAT++ V+ L + +L P+R+S S+ + STL + + + ++ L+ L +
Sbjct: 270 YSATMSSKVESLQRAALQNPVRVSISSSSHQVVSTLLQRYIFLPHKY---KDLYLIHLLN 326
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
IIFS T R+ IL A LHG L+Q+ RL AL F+ Q D L+A
Sbjct: 327 DNIGHPTIIFSRTVNETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFKTQSRDILVA 386
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVAARGLDI V V+N+ P D +YVHRVGRTARAG+ G AV+FVT D + I
Sbjct: 387 TDVAARGLDIPAVDLVVNFDLPSDSQTYVHRVGRTARAGKSGKAVSFVTQYDLEIWLRIE 446
Query: 360 KRAGSKLKSRIV 371
G ++ ++
Sbjct: 447 NALGKQIPEEVI 458
>gi|88798356|ref|ZP_01113941.1| ATP-dependent RNA helicase, DEAD box family protein [Reinekea
blandensis MED297]
gi|88778796|gb|EAR09986.1| ATP-dependent RNA helicase, DEAD box family protein [Reinekea sp.
MED297]
Length = 433
Score = 285 bits (728), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 149/364 (40%), Positives = 224/364 (61%), Gaps = 6/364 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L+ P+L+A GY+ PTPIQA IP L+GRD+ +A TG+GKTA F LP ++ L+
Sbjct: 5 ELALADPILKAVTEQGYTTPTPIQAQGIPAVLSGRDLLAAAQTGTGKTAGFTLPIIQHLI 64
Query: 62 Y--RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
RP + RVL+LTPTRELA QV + A++TD+R +V GG+ Q LR
Sbjct: 65 TENRPVKANRCRVLVLTPTRELAAQVEDNVTAYAKYTDVRSEVVFGGVKINPQMQKLRRG 124
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
DI+VATPGR++D L + ++D DL VL+LDEADR+L++GF +I ++RL P +RQ +
Sbjct: 125 VDILVATPGRLLD-LHSQNAIDFRDLEVLVLDEADRMLDMGFIHDIRRIMRLLPTQRQNL 183
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
+FSAT ++++ L K + P+ +S P + ++V+ + + ++ A+L+ L
Sbjct: 184 MFSATFSDEIRALAKTIVENPVEVSVTPKNTTAERVRQQVIPVDKAKKT---ALLIDLLK 240
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
K +V++FS TK A+R+ A + AA +HGN +Q R AL F+ + L+A
Sbjct: 241 KETWHQVLVFSRTKHGANRIAEKLNKAKIPAAAIHGNKSQGARTRALSEFKSNDIRVLVA 300
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TD+AARG+DI + VIN+ P YVHR+GRT RAG +G A++F + ++ LL A+
Sbjct: 301 TDIAARGIDIDQLPHVINFDLPNVAEDYVHRIGRTGRAGSDGDAISFASRDEADLLAAVQ 360
Query: 360 KRAG 363
G
Sbjct: 361 NFIG 364
>gi|238501386|ref|XP_002381927.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357]
gi|220692164|gb|EED48511.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357]
gi|391863856|gb|EIT73155.1| ATP-dependent RNA helicase [Aspergillus oryzae 3.042]
Length = 472
Score = 285 bits (728), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 155/366 (42%), Positives = 215/366 (58%), Gaps = 7/366 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L L AC+++GY PT IQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+
Sbjct: 56 ELGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQALM 115
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P + L+L PTRELA Q+ E + +R ++VGG+ Q AL P
Sbjct: 116 DKPS---SFFGLVLAPTRELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIALGKKPH 172
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L +L L++DEADRLL++ F + +++++ P+ R+T LF
Sbjct: 173 IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKVLPRERRTYLF 232
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPS-AKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT++ V+ L + SL PLR++ S + STL + + I +++ L+ L ++
Sbjct: 233 SATMSSKVESLQRASLQNPLRVAVSSSKFQTVSTLQQSYIFIPHK---HKDLYLVYLLNE 289
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
IIF T RL L A LHG L+Q+ RL AL FR + D L+AT
Sbjct: 290 FVGQSCIIFCRTVHETQRLSFFLRLLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVAT 349
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V V+N+ P D +++HR+GRTARAG+ G A++F T D I
Sbjct: 350 DVAARGLDIPSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAISFATQYDVEAWLRIEG 409
Query: 361 RAGSKL 366
G KL
Sbjct: 410 ALGKKL 415
>gi|334344694|ref|YP_004553246.1| DEAD/DEAH box helicase [Sphingobium chlorophenolicum L-1]
gi|334101316|gb|AEG48740.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
L-1]
Length = 460
Score = 285 bits (728), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 150/368 (40%), Positives = 220/368 (59%), Gaps = 8/368 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ P+LRA A Y PTPIQA IP+ L G+D+CG A TG+GKTAAFALP+L+
Sbjct: 5 DLGLAEPILRALAAKKYGSPTPIQAQAIPMLLKGKDLCGIAQTGTGKTAAFALPSLDHFA 64
Query: 62 YRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
PK P R+L+L+PTRELA Q+ +F + +V GG+ Q L
Sbjct: 65 RNPKPTPLQGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVEVVFGGVPINRQIRTLGRG 124
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
DIVVATPGR++D L + + + D + +LDEAD+++++GF + + +L PK RQ +
Sbjct: 125 VDIVVATPGRLLD-LIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPKERQNL 183
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
FSAT+ +++ L L P+++S P + + ++ + +M ++ LL+L
Sbjct: 184 FFSATMPGEIEALAAQFLHDPVKVSVAPQSTTAERVRQQATFVNQM----EKQALLNLTI 239
Query: 240 KT-FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+ + +IF+ TK A R+ A ++A +HGN +QAQR AL+ FR HV L+
Sbjct: 240 RNEDIDRALIFTRTKHGADRVVRFLEGAGIQAVAIHGNKSQAQRTTALQAFRHGHVKLLV 299
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+AARG+D+ GV VIN+ P YVHR+GRTARAG EG A++FV D++R LKAI
Sbjct: 300 ATDIAARGIDVSGVSHVINFELPNVPEQYVHRIGRTARAGAEGIAISFVADDERPYLKAI 359
Query: 359 AKRAGSKL 366
+ KL
Sbjct: 360 ERTTKVKL 367
>gi|366994708|ref|XP_003677118.1| hypothetical protein NCAS_0F02790 [Naumovozyma castellii CBS 4309]
gi|342302986|emb|CCC70763.1| hypothetical protein NCAS_0F02790 [Naumovozyma castellii CBS 4309]
Length = 502
Score = 284 bits (727), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 161/404 (39%), Positives = 231/404 (57%), Gaps = 7/404 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL+L LL+AC+ L Y+KPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L L
Sbjct: 86 ELDLVPELLQACKNLNYTKPTPIQSRSIPPALKGNDIIGLAQTGSGKTAAFAIPILNSLW 145
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + A IL PTRELA Q+ + + +R +VGG++ Q L P
Sbjct: 146 HDQQPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 202
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR-RQTML 180
I++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R T L
Sbjct: 203 IIIATPGRLMDHLENTKGFSLRKLKYLVMDEADRLLDMEFGPVLDRILKILPTQGRTTYL 262
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T +D+L + SLT P++ + + TL + ++ + ++ L+ L ++
Sbjct: 263 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLIVVPGGL---KDTYLVYLLNE 319
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
IIF+ TK A R+ L L A LHG+L Q QR AL+LF+ L+AT
Sbjct: 320 FIGKTTIIFTRTKANAERISGLCNLLEFNATALHGDLNQNQRTGALDLFKAGRKSILVAT 379
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V VINY P D SY+HRVGRTARAGR G +++ V+ D L+ I +
Sbjct: 380 DVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 439
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 404
G KL V ++ I + +++ +V + +E+ LR
Sbjct: 440 VLGKKLPKESVDKEMILHFRDSVDKANGEVIMEMNRRNKEKQLR 483
>gi|354478220|ref|XP_003501313.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Cricetulus
griseus]
Length = 455
Score = 284 bits (727), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 152/366 (41%), Positives = 217/366 (59%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 28 DLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 87
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++C ++VGG+ + Q AL P
Sbjct: 88 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSIALAKKPH 144
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 145 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGN 264
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 265 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 320
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 321 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 380
Query: 361 RAGSKL 366
G KL
Sbjct: 381 LIGKKL 386
>gi|291392610|ref|XP_002712705.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1
[Oryctolagus cuniculus]
Length = 455
Score = 284 bits (727), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 152/366 (41%), Positives = 216/366 (59%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 28 DLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 87
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + + C ++VGG+ + Q AL P
Sbjct: 88 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVHCAVIVGGIDSMSQSLALAKKPH 144
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 145 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 265 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 320
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 321 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 380
Query: 361 RAGSKL 366
G KL
Sbjct: 381 LIGKKL 386
>gi|255716462|ref|XP_002554512.1| KLTH0F07106p [Lachancea thermotolerans]
gi|238935895|emb|CAR24075.1| KLTH0F07106p [Lachancea thermotolerans CBS 6340]
Length = 525
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 161/404 (39%), Positives = 228/404 (56%), Gaps = 7/404 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNL L+ ACE L YSKPTPIQA IP AL G+DI G A TGSGKTAAFA+P L +L
Sbjct: 109 ELNLVPELIEACENLKYSKPTPIQAEAIPPALEGKDIIGLAQTGSGKTAAFAIPILNQLW 168
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + A +L PTRELA Q+ + + +R +VGG++ Q L P
Sbjct: 169 HDQQPYYAC---VLAPTRELAQQIKETFDSLGGAMGVRTTCIVGGMNMIDQARDLMRKPH 225
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR-RQTML 180
I++ATPGR++DHL N+ + L L++DEADRLL++ F + ++++ P + R T L
Sbjct: 226 IIIATPGRLMDHLENTKGFSMRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQGRTTYL 285
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L ++
Sbjct: 286 FSATMTSKIDKLQRASLTNPVKCAVSTKYQTVDTLIQTLMVVPGGL---KNTFLIYLLNE 342
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
I+F+ TK A R+ L L A LHG+L Q QR AL+LF+ L+AT
Sbjct: 343 FLGKTAIVFTRTKANAERIATLCNLLEFSATALHGDLNQNQRTGALDLFKAGRRSILVAT 402
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V VINY P D SY+HRVGRTARAGR G +++ V+ D L+ I
Sbjct: 403 DVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIED 462
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 404
G KL V + I +++ +V L +E++ R
Sbjct: 463 VLGRKLPKENVDKGVILSLRDTVDKANGEVVMELNRRNKEKVAR 506
>gi|330923108|ref|XP_003300102.1| hypothetical protein PTT_11258 [Pyrenophora teres f. teres 0-1]
gi|311325897|gb|EFQ91780.1| hypothetical protein PTT_11258 [Pyrenophora teres f. teres 0-1]
Length = 516
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 158/379 (41%), Positives = 220/379 (58%), Gaps = 13/379 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L ACE L + PTPIQ IPLAL GRD+ G A TGSGKTAAF LP L+ LL
Sbjct: 90 DLGIREELCDACENLKFKNPTPIQTQAIPLALEGRDVIGLAETGSGKTAAFVLPILQSLL 149
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + LIL PTRELA Q+ ++ + +++C +VGG+ Q AL P
Sbjct: 150 EKPQPLFG---LILAPTRELAYQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPH 206
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR-RQTML 180
IVVATPGR++DHL N+ L L ++LDEADRLL+L F + +++++ P+ R T L
Sbjct: 207 IVVATPGRLLDHLENTKGFSLKHLKYMVLDEADRLLDLDFGPVLDKILKVLPREGRHTYL 266
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCS 239
FSAT++ V+ L + +L P+R+S S+ + STL + R + ++ L+ L +
Sbjct: 267 FSATMSSKVENLQRAALQNPVRVSISSSSHQVVSTLLQ---RYAFIPHKYKDLYLIHLLN 323
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
IIF+ T R+ +L A LHG L+Q+ RL AL F+ + D L+A
Sbjct: 324 DNIGHPTIIFTRTVNETQRIAVLLRALGFGAIPLHGQLSQSARLGALNKFKSKSRDILVA 383
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVAARGLDI V ++N+ P D +YVHRVGRTARAG+ G AV+FVT D + I
Sbjct: 384 TDVAARGLDIPAVDLIVNFDLPSDSQTYVHRVGRTARAGKSGKAVSFVTQYDLEIWLRIE 443
Query: 360 KRAGSKLKSRIVAEQSITK 378
G K + EQ+ K
Sbjct: 444 HALGKK-----IPEQTFDK 457
>gi|440910729|gb|ELR60491.1| Putative ATP-dependent RNA helicase DDX47 [Bos grunniens mutus]
Length = 457
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 152/366 (41%), Positives = 217/366 (59%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 30 DLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 89
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++C ++VGG+ + Q AL P
Sbjct: 90 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH 146
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 147 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 206
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 207 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGN 266
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 267 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 322
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 323 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 382
Query: 361 RAGSKL 366
G KL
Sbjct: 383 LIGKKL 388
>gi|114052016|ref|NP_001039850.1| probable ATP-dependent RNA helicase DDX47 [Bos taurus]
gi|109825481|sp|Q29S22.1|DDX47_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
Full=DEAD box protein 47
gi|88758683|gb|AAI13208.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Bos taurus]
gi|296487253|tpg|DAA29366.1| TPA: probable ATP-dependent RNA helicase DDX47 [Bos taurus]
Length = 457
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 152/366 (41%), Positives = 217/366 (59%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 30 DLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 89
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++C ++VGG+ + Q AL P
Sbjct: 90 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH 146
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 147 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 206
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 207 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGN 266
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 267 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 322
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 323 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 382
Query: 361 RAGSKL 366
G KL
Sbjct: 383 LIGKKL 388
>gi|27229058|ref|NP_080636.2| probable ATP-dependent RNA helicase DDX47 [Mus musculus]
gi|52782790|sp|Q9CWX9.2|DDX47_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
Full=DEAD box protein 47
gi|26345792|dbj|BAC36547.1| unnamed protein product [Mus musculus]
gi|26368455|dbj|BAB26843.2| unnamed protein product [Mus musculus]
gi|66365081|gb|AAH95944.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
gi|124297422|gb|AAI32243.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
gi|124298172|gb|AAI32245.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
gi|148678592|gb|EDL10539.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_b [Mus
musculus]
Length = 455
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 152/366 (41%), Positives = 217/366 (59%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 28 DLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 87
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++C ++VGG+ + Q AL P
Sbjct: 88 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH 144
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 145 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGN 264
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 265 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 320
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 321 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 380
Query: 361 RAGSKL 366
G KL
Sbjct: 381 LIGKKL 386
>gi|396459541|ref|XP_003834383.1| hypothetical protein LEMA_P060520.1 [Leptosphaeria maculans JN3]
gi|312210932|emb|CBX91018.1| hypothetical protein LEMA_P060520.1 [Leptosphaeria maculans JN3]
Length = 516
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 158/372 (42%), Positives = 220/372 (59%), Gaps = 8/372 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L ACE L ++ PTPIQ IPLAL GRD+ G A TGSGKTAAF LP L+ LL
Sbjct: 91 DLGVREELCDACENLKFTTPTPIQTQAIPLALEGRDVIGLAETGSGKTAAFVLPILQALL 150
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ A+ LIL PTRELA Q+ ++ + +++C +VGG+ Q AL P
Sbjct: 151 DKPQ---ALFGLILAPTRELAYQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPH 207
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR-RQTML 180
IVVATPGR++DHL N+ L L ++LDEADRLL+L F + +++R+ P+ R T L
Sbjct: 208 IVVATPGRLLDHLENTKGFSLKHLKYMVLDEADRLLDLDFGPVLDKILRVLPRDGRHTYL 267
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCS 239
FSAT++ V+ L + +L P+R+S S+ + STL + + I +++ L+ L +
Sbjct: 268 FSATMSSKVESLQRAALQNPVRVSISSSSHQVVSTLLQRYLFIPHK---HKDLYLIHLLT 324
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
IIF+ T R+ IL A LHG L+Q+ RL AL F+ + D L+A
Sbjct: 325 DNIGHPTIIFTRTVNETERIAILLRALGFGAIPLHGQLSQSARLGALNKFKTKSRDILVA 384
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVA+RGLDI V V+N P D +YVHRVGRTARAG+ G A +FVT D + I
Sbjct: 385 TDVASRGLDIPAVDLVVNLDLPSDSQTYVHRVGRTARAGKSGKAFSFVTQYDVEIWLRIE 444
Query: 360 KRAGSKLKSRIV 371
G K++ +V
Sbjct: 445 HALGKKIEEEVV 456
>gi|299829301|ref|NP_001015005.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Rattus norvegicus]
gi|149049184|gb|EDM01638.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_a [Rattus
norvegicus]
Length = 455
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 152/366 (41%), Positives = 217/366 (59%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 28 DLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 87
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++C ++VGG+ + Q AL P
Sbjct: 88 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH 144
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 145 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGN 264
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 265 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 320
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 321 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 380
Query: 361 RAGSKL 366
G KL
Sbjct: 381 LIGKKL 386
>gi|381199589|ref|ZP_09906736.1| putative helicase [Sphingobium yanoikuyae XLDN2-5]
gi|427407897|ref|ZP_18898099.1| hypothetical protein HMPREF9718_00573 [Sphingobium yanoikuyae ATCC
51230]
gi|425713860|gb|EKU76872.1| hypothetical protein HMPREF9718_00573 [Sphingobium yanoikuyae ATCC
51230]
Length = 476
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 157/375 (41%), Positives = 229/375 (61%), Gaps = 14/375 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL LS P+++A A Y++PTPIQ IP+ L GRD+CG A TG+GKTAAFALP+L+
Sbjct: 5 ELGLSEPIIKALTAKKYAEPTPIQQKAIPVLLEGRDLCGIAQTGTGKTAAFALPSLDYFA 64
Query: 62 YRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
PK P R+L+L+PTRELA Q+ +F + V GG+ Q AL +
Sbjct: 65 RNPKPTPIKGCRMLVLSPTRELAAQIAQSFRDYGRFLRLSVETVFGGVPVNKQIRALSAG 124
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
DIVVATPGR++D L + + + D + +LDEAD+++++GF + + +L P+ RQ +
Sbjct: 125 VDIVVATPGRLLD-LIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPRDRQNL 183
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ--EAVLLSL 237
FSAT+ ++++ L L P+++S P + T E VR +++ VNQ + LL +
Sbjct: 184 FFSATMPKEIEALAGQFLNDPVKVSV-----APQSTTAERVR-QQLTFVNQAEKQALLHI 237
Query: 238 CSKTF-TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 296
KT + +IF+ TK A R+ A ++A +HGN +QAQR AL+ FR H
Sbjct: 238 VLKTEEIDRALIFTRTKHGADRVVRFLEGAGIQAFAIHGNKSQAQRTTALQAFRHGHCKL 297
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 356
L+ATD+AARG+D+ GV VIN+ P YVHR+GRTARAG +G A++FV D++R LK
Sbjct: 298 LVATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGADGIAISFVADDERPYLK 357
Query: 357 AIAKRAGSKLKSRIV 371
AI + +K+K IV
Sbjct: 358 AIER--ATKVKPEIV 370
>gi|367014487|ref|XP_003681743.1| hypothetical protein TDEL_0E02890 [Torulaspora delbrueckii]
gi|359749404|emb|CCE92532.1| hypothetical protein TDEL_0E02890 [Torulaspora delbrueckii]
Length = 501
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 166/421 (39%), Positives = 233/421 (55%), Gaps = 7/421 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
LN+ LL+AC+ L ++KPTPIQA IP AL G+DI G A TGSGKTAAFALP L RL +
Sbjct: 86 LNIVPELLQACKNLNFTKPTPIQAKAIPPALEGKDIIGLAQTGSGKTAAFALPILNRLWH 145
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
A IL+PTRELA Q+ + + R +VGG++ Q L P I
Sbjct: 146 DQSPYYAC---ILSPTRELAQQIKETFDSLGTIMGARTTCIVGGMNMMDQARDLMRKPHI 202
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR-RQTMLF 181
++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R T LF
Sbjct: 203 IIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQGRTTYLF 262
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T +D+L + SLT P++ + + TL + ++ + + L+ L ++
Sbjct: 263 SATMTSKIDKLQRASLTDPVKCAVSNKYQTVDTLVQTLMVVPGGL---KNTFLIYLLNEF 319
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
IIF+ TK A R+ L L A LHG+L Q QR AL+LF+ L+ATD
Sbjct: 320 IGKTTIIFTRTKANAERISGLCNLLEFNATALHGDLNQNQRTGALDLFKAGRRSILVATD 379
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V VINY P D SY+HRVGRTARAGR G +++ V+ D L+ I +
Sbjct: 380 VAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEV 439
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 421
G KL V + +++ +V L +E+I R + A M +E
Sbjct: 440 LGKKLPKENVDRDLVMSLRNSVDKANGEVIMELNRRNKEKIARSGGRRSRMAARMDMDRE 499
Query: 422 E 422
E
Sbjct: 500 E 500
>gi|408489495|ref|YP_006865864.1| ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755]
gi|408466770|gb|AFU67114.1| ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755]
Length = 423
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 151/370 (40%), Positives = 226/370 (61%), Gaps = 5/370 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS L++A + GY PTPIQ IP L G+D+ SA TG+GKTA F LP L+ L
Sbjct: 6 LGLSEALVKAVSSQGYDTPTPIQEKSIPAVLEGKDVLASAQTGTGKTAGFTLPLLQLLSQ 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P R +R LILTPTRELA QVH ++ +F D+R ++ GG++ K Q + LR+ D
Sbjct: 66 TPPLRNRPVRALILTPTRELAAQVHQSVKDYGKFVDLRSTVIFGGVNQKSQVSTLRNGVD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR+ID L N + L + +L+LDEADR+L++GF +I ++++L PK+RQT+LF
Sbjct: 126 VLVATPGRLID-LNNQGLLSLAKVEILVLDEADRMLDMGFLRDIKKIMKLIPKQRQTLLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT + ++ L L P+ + + P + ++V R+ + ++ + +L+ L S+
Sbjct: 185 SATFSREIRSLASEFLKNPVSVESTPENTTVEAIEQQVYRVAKEKKTD---LLIKLISEG 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++FS TK A++L A + AA +HGN +Q R +AL F+ V L+ATD
Sbjct: 242 NWEQVLVFSRTKHGANKLAKKLEAAKIGAAAIHGNKSQGARTKALAGFKSGSVKVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+A+RGLDI + V+N+ P YVHR+GRT RAG G AV+ V+ ++ LK I K
Sbjct: 302 IASRGLDIPLLPYVVNFELPNVSEDYVHRIGRTGRAGASGLAVSLVSADETVFLKDIEKL 361
Query: 362 AGSKLKSRIV 371
G K+ I+
Sbjct: 362 IGDKIPMDII 371
>gi|156837514|ref|XP_001642781.1| hypothetical protein Kpol_1005p11 [Vanderwaltozyma polyspora DSM
70294]
gi|160358661|sp|A7TS37.1|RRP3_VANPO RecName: Full=ATP-dependent rRNA helicase RRP3
gi|156113348|gb|EDO14923.1| hypothetical protein Kpol_1005p11 [Vanderwaltozyma polyspora DSM
70294]
Length = 506
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 159/404 (39%), Positives = 229/404 (56%), Gaps = 7/404 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L+L L+ AC+ L ++KPTPIQA IP AL G DI G A TGSGKTAAFA+P L RL
Sbjct: 90 DLDLVPELIEACKNLNFAKPTPIQARSIPPALQGHDIIGLAQTGSGKTAAFAIPILNRLW 149
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + A IL PTRELA Q+ + + +R +VGG++ Q L P
Sbjct: 150 HDQQPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSACIVGGMNMMDQARDLMRKPH 206
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR-RQTML 180
I++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R T L
Sbjct: 207 IIIATPGRLMDHLENTRGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQGRTTYL 266
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L ++
Sbjct: 267 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLIVVPGGL---KNTYLIYLMNE 323
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+I+F+ TK A R+ L L A LHG+L Q QR +L+LF+ L+AT
Sbjct: 324 FIGKTIIVFTRTKANAERITTLANLLEFSATALHGDLNQNQRTGSLDLFKAGRRSILVAT 383
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V VINY P D SY+HRVGRTARAGR G +++ V+ D L+ I
Sbjct: 384 DVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIED 443
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 404
G KL V + +I +++ +V L +E+I R
Sbjct: 444 VLGKKLPKENVNKDAILTLRDSVDKANGEVVMELNRRNKEKIAR 487
>gi|426225486|ref|XP_004006897.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Ovis aries]
Length = 457
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 151/366 (41%), Positives = 217/366 (59%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 30 DLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 89
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++C ++VGG+ + Q AL P
Sbjct: 90 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH 146
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+V+ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 147 VVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 206
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 207 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGN 266
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 267 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 322
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 323 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 382
Query: 361 RAGSKL 366
G KL
Sbjct: 383 LIGKKL 388
>gi|453082962|gb|EMF11008.1| ATP-dependent rRNA helicase RRP3 [Mycosphaerella populorum SO2202]
Length = 516
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 159/408 (38%), Positives = 234/408 (57%), Gaps = 9/408 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL + L AC +LGY PT IQ IP+AL G+D+ G A TGSGKTAAFALP L+ LL
Sbjct: 92 ELGVREELCDACISLGYKTPTAIQRESIPIALQGKDVIGLAETGSGKTAAFALPILQALL 151
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ L+L PTRELA Q+ E + +++C ++VGG+ Q+ AL P
Sbjct: 152 EKQDHYFG---LVLAPTRELAYQISQQFEALGSLINVKCAVIVGGMDMTPQQIALAKKPH 208
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L L L++DEADRLL+L F + +++++ P+ R+TMLF
Sbjct: 209 IIVATPGRLMDHLENTKGFSLRKLKYLVMDEADRLLDLDFGPILDKILQVLPRERRTMLF 268
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRI-RRMREVNQEAVLLSLCS 239
SAT++ +D L + +L P+R+S S+ + L + + I + +++ L+ L +
Sbjct: 269 SATMSTKLDNLTRAALQSPVRVSISSSSYQTVKNLKQSYIFIPHKFKDI----YLVYLVN 324
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+ IIF+ T R+ L A LHG L Q+ RL AL FR D L+A
Sbjct: 325 EFAGQTCIIFTRTINETARIAFLLRALGRSAIPLHGQLNQSARLGALNKFRGGSRDILVA 384
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVAARGLDI V V+NY P D +YVHRVGRTARAG+ G A++ VT D + + I
Sbjct: 385 TDVAARGLDIPSVDLVLNYDLPPDSKTYVHRVGRTARAGKAGVAISIVTQYDVEVYQRIE 444
Query: 360 KRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAE 407
K G KL + + +++ +++ + ++ E E+R +K +
Sbjct: 445 KALGKKLAEFGTEKDEVMVFAQRVQEAQRVAVQEMKNEHEKRGNKKGQ 492
>gi|406860112|gb|EKD13172.1| ATP-dependent rRNA helicase RRP3 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 497
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 156/350 (44%), Positives = 209/350 (59%), Gaps = 6/350 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L AC ALGY PTPIQA IPLAL RD+ A TGSGKTAAFALP L+ LL
Sbjct: 75 DLGIVDELCDACTALGYKAPTPIQAESIPLALQDRDLIALAETGSGKTAAFALPILQSLL 134
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ L+L PTRELA Q+ E + +RC ++VGG+ Q AL P
Sbjct: 135 DKPQPFFG---LVLAPTRELAYQISQSFEALGSKIGVRCAVIVGGMDMVPQAIALGKKPH 191
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VA+PGR++DHL N+ L L L++DEADRLL+L F A I +++++ P+ R+T LF
Sbjct: 192 IIVASPGRLLDHLENTKGFSLRALKYLVMDEADRLLDLDFGAIIDKILKVIPRERRTYLF 251
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++ V+ L + SL PLR+S + STL + + + V+++ L+ L ++
Sbjct: 252 SATMSSKVESLQRASLKDPLRVSVSTKYQTVSTLIQNCLIVPL---VHKDVYLVYLMNEF 308
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
IIF+ T RL IL A LHG L+Q RL AL FR L+ATD
Sbjct: 309 AGQSAIIFTRTVNETQRLAILLRSLGFGAIPLHGQLSQTARLGALNKFRAGTRKILVATD 368
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
VAARGLDI V V+NY P + +Y+HRVGRTARAG+ G+A + VT D
Sbjct: 369 VAARGLDIPSVDIVLNYDLPPESKTYIHRVGRTARAGKSGHAFSIVTQYD 418
>gi|167761792|ref|ZP_02433919.1| hypothetical protein BACSTE_00133 [Bacteroides stercoris ATCC
43183]
gi|167700298|gb|EDS16877.1| DEAD/DEAH box helicase [Bacteroides stercoris ATCC 43183]
Length = 372
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 149/365 (40%), Positives = 225/365 (61%), Gaps = 4/365 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+LN++ P+L+A E GY+ PTPIQ IP ALTG+DI G A TG+GKTAAFA+P ++ L
Sbjct: 5 DLNITEPILKAIEEKGYANPTPIQVKAIPAALTGKDILGCAQTGTGKTAAFAIPIIQHLQ 64
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
R +I+ LILTPTRELA+Q+ I+ A++T +R ++ GG++ + Q L D
Sbjct: 65 VLKNRDKSIKALILTPTRELALQISECIDDYAKYTQVRHGVIFGGVNQRAQVNMLHKGVD 124
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++D L N + LD++ +LDEADR+L++GF +I L+ PK +QT+ F
Sbjct: 125 ILVATPGRLLD-LMNQGYIHLDNVRHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQTLFF 183
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ + + L L +P++++ P + T+ + + + + + +L+S+ KT
Sbjct: 184 SATMPDTIIALTNSLLKQPVKITITPKSSTVDTIEQTIYFVEKKE---KSKLLISILHKT 240
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
V++FS TK A R+ + A + + +HGN +Q R ALE F+ + +IATD
Sbjct: 241 EGQSVLVFSRTKHNADRIVRVLSKAGIGSQAIHGNKSQNARQSALENFKTGKIRVMIATD 300
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARG+DI + VINY P +YVHR+GRT RAG G A+TF + +R L+ I K
Sbjct: 301 IAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNLGTALTFCSQEERKLVNDIQKL 360
Query: 362 AGSKL 366
G KL
Sbjct: 361 TGKKL 365
>gi|345570196|gb|EGX53021.1| hypothetical protein AOL_s00007g357 [Arthrobotrys oligospora ATCC
24927]
Length = 523
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 156/361 (43%), Positives = 212/361 (58%), Gaps = 6/361 (1%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 68
L E L + KPTPIQ A IPLAL G+D+ G A TGSGKTAAFALP L+ L + P
Sbjct: 113 LCETLEILKFHKPTPIQQASIPLALAGKDLIGLAETGSGKTAAFALPILQALYHSPHS-- 170
Query: 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 128
+ IL PTRELA Q+ E I ++ C++VGG+ Q AL P I+VATPG
Sbjct: 171 TLFACILAPTRELAFQISEQTEAIGGSLGVKTCVIVGGMDMMPQAIALSKRPHIIVATPG 230
Query: 129 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 188
R++DHL N+ L + L++DEADRLL+L F I +++++ P +R T LFSAT+T+
Sbjct: 231 RLLDHLENTKGFSLRSIKYLVMDEADRLLDLDFGPIIEKILKVLPPQRNTYLFSATMTDK 290
Query: 189 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSK-VI 247
V+ L ++SLT P+R++ + +L + + I + +++ L+ L ++ F K +I
Sbjct: 291 VERLQRMSLTNPVRVAVSSKYQTVKSLLQYFMLIPQK---DKDTYLVYLVAEKFAGKTMI 347
Query: 248 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 307
IF+ T R+ +L L A LHG L+Q RL AL F+ + L+ATDVAARGL
Sbjct: 348 IFTRTIMDTQRISVLLRLLGCSAIPLHGQLSQTGRLGALNKFKAGARNILVATDVAARGL 407
Query: 308 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 367
DI V VINY D +Y+HRVGRTARAGR G V VT D I K G KL
Sbjct: 408 DIPTVDYVINYDIAGDSKTYIHRVGRTARAGRSGVCVNLVTQYDIEEFTRIEKALGKKLD 467
Query: 368 S 368
+
Sbjct: 468 A 468
>gi|389748758|gb|EIM89935.1| DEAD-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 452
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 156/364 (42%), Positives = 211/364 (57%), Gaps = 6/364 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+ L PLL A E LGY PT IQA +P AL GRDI G A TGSGKTAAFALP ++ L
Sbjct: 20 IGLIDPLLEAVEQLGYKTPTDIQAEALPHALEGRDIIGVASTGSGKTAAFALPIIQALWN 79
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
PK + A ++ PTRELA Q+ E + +RC +++GG+ Q AL P I
Sbjct: 80 DPKGLFAC---VIAPTRELAYQISQQFEALGSGIGVRCAVIIGGMDVVSQSIALAKKPHI 136
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+VATPGR+ HL N+ L L +LDEADRLL++ F +I +++++ PK R T LFS
Sbjct: 137 IVATPGRLNYHLENTKGFSLRGLKFFVLDEADRLLDMDFGPDIDKILKVIPKERTTYLFS 196
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T V +L + SL P+R+ STL + + M ++E L++L +
Sbjct: 197 ATMTTKVAKLQRASLQNPVRVEVSSKYSTVSTLLQYYL---FMPLSHKEVHLVNLANTLA 253
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+ ++IF+ T A +L I+ A LHG L+Q+QRL AL F+ L+ATDV
Sbjct: 254 QNSMMIFTRTVHDAQKLSIILRTLGFPAVPLHGQLSQSQRLGALSKFKSGGRSILVATDV 313
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI V VIN+ P Y+HRVGRTARAGR G ++T VT D L+ I K
Sbjct: 314 ASRGLDIPSVDVVINFDIPTHSKDYIHRVGRTARAGRAGKSITLVTQYDIELIHRIEKVT 373
Query: 363 GSKL 366
G K+
Sbjct: 374 GKKM 377
>gi|398382811|ref|ZP_10540892.1| DNA/RNA helicase, superfamily II [Sphingobium sp. AP49]
gi|397726211|gb|EJK86652.1| DNA/RNA helicase, superfamily II [Sphingobium sp. AP49]
Length = 460
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 157/375 (41%), Positives = 227/375 (60%), Gaps = 14/375 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL LS P+L+A A Y+ PTPIQ IP+ L GRD+CG A TG+GKTAAFALP+L+
Sbjct: 5 ELGLSEPILKALSAKNYATPTPIQQKAIPVLLEGRDLCGIAQTGTGKTAAFALPSLDYFA 64
Query: 62 YRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
PK P R+L+L+PTRELA Q+ +F + V GG+ Q AL +
Sbjct: 65 RNPKPTPIKGCRMLVLSPTRELAAQIAQSFRDYGRFMRLSVETVFGGVPIGKQIRALSAG 124
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
DIVVATPGR++D L + + + D + +LDEAD+++++GF + + ++ P+ RQ +
Sbjct: 125 VDIVVATPGRLLD-LIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRVAKMLPRDRQNL 183
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ--EAVLLSL 237
FSAT+ ++++ L L P+++S P + T E VR ++M VNQ + LL +
Sbjct: 184 FFSATMPKEIEALAAQFLNDPVKVSV-----APQSTTAERVR-QQMTFVNQAEKQALLHI 237
Query: 238 CSKTF-TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 296
KT + +IF+ TK A R+ A + A +HGN +Q QR AL+ FR+ V
Sbjct: 238 VLKTEEIDRALIFTRTKHGADRVVRFLEGAGIDAFAIHGNKSQGQRTTALQAFRQGKVKL 297
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 356
L+ATD+AARG+D+ GV VIN+ P YVHR+GRTARAG +G A++FV D++R LK
Sbjct: 298 LVATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGADGIAISFVADDERPYLK 357
Query: 357 AIAKRAGSKLKSRIV 371
AI + +K+K IV
Sbjct: 358 AIER--ATKVKPEIV 370
>gi|237745550|ref|ZP_04576030.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
gi|229376901|gb|EEO26992.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
Length = 470
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 155/383 (40%), Positives = 229/383 (59%), Gaps = 11/383 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L+ +L+A + LGYS PTPIQ+ IP+ L G+D+ G+A TG+GKTA ++LP L+ LL
Sbjct: 19 DFGLASEILKALDDLGYSSPTPIQSQAIPVILEGKDVMGAAQTGTGKTAGYSLPVLQSLL 78
Query: 62 Y------RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
Y P R P +R LIL PTRELA QV+ + K A++T +R +V GG+ Q
Sbjct: 79 YYANASMSPARHP-VRALILVPTRELADQVYEDVRKYAKYTSLRTAVVFGGVDMSGQTGI 137
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR+ +I++ATPGR++DH++ +V+L +L+LDEADR+L++GF ++ +V L PK+
Sbjct: 138 LRAGAEILIATPGRLLDHIQQK-NVNLGQTGILVLDEADRMLDMGFLPDLQRIVNLLPKK 196
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQ +LFSAT + ++ +L L +P+ + +T+ V RI + + LL
Sbjct: 197 RQNLLFSATFSSEIRKLANSFLDRPVSVEVARQNATADNVTQTVYRIDEADKNDAVEYLL 256
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
L + +V+IFS TK A RL LKAA +HG+ TQA+R+ AL+ F++ ++
Sbjct: 257 RLHKR---EQVLIFSNTKAGASRLARQLEKKGLKAAAIHGDKTQAERMAALDAFKEGNIT 313
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARGL I + VIN+ P YVHR+GRT RAG G A++ + D LL
Sbjct: 314 VLVATDVAARGLHIEELPCVINFDLPFVAEDYVHRIGRTGRAGASGEAISLCSAKDEKLL 373
Query: 356 KAIAKRAGSKLKSRIVAEQSITK 378
I K KL + + I K
Sbjct: 374 NEIEKLIKRKLPVHSIPDPEIRK 396
>gi|348511400|ref|XP_003443232.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Oreochromis niloticus]
Length = 479
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 149/375 (39%), Positives = 218/375 (58%), Gaps = 6/375 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG+ PT IQ IP+AL G+D+ G A TGSGKT AFALP L+ LL
Sbjct: 41 DLGVTEVLCEACDQLGWKSPTKIQIEAIPVALQGKDVIGLAETGSGKTGAFALPILQSLL 100
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ L+LTPTRELA Q+ E + ++C ++VGG+ Q L P
Sbjct: 101 ASPQRL---HTLVLTPTRELAFQISEQFEALGSSIGVKCAVIVGGIDMMSQSLVLAKKPH 157
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+V+ATPGR+IDHL N+ L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 158 VVIATPGRLIDHLENTKGFSLRALKFLVMDEADRILNMDFETEVDKILKVIPRERRTFLF 217
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ V +L + +L P++ + L + + I ++ L+S+ ++
Sbjct: 218 SATMTKKVQKLERAALKDPVKCAVSTKYSTVDKLQQYYIFIPSKY---KDCYLVSILNEL 274
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ IIF T A R+ +L + A LHG ++Q +RL AL F+ + L+ATD
Sbjct: 275 AGNSFIIFCSTCNTAQRVALLLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLLATD 334
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V VINY P Y+HRVGRTARAGR G ++TFVT D L + I
Sbjct: 335 VASRGLDIPHVDCVINYDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIETL 394
Query: 362 AGSKLKSRIVAEQSI 376
G KL + E+ +
Sbjct: 395 IGKKLPAFPTQEEEV 409
>gi|281204092|gb|EFA78288.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 443
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 155/379 (40%), Positives = 223/379 (58%), Gaps = 6/379 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L + ++ AC+ LG+ PT IQ IP AL G+DI G A TGSGKTAAF++P L+ LL
Sbjct: 18 LGVDPQIVEACKKLGFKNPTEIQRKAIPEALAGKDIVGLAQTGSGKTAAFSIPMLQALLA 77
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+P + L+L PTRELAVQ+ IE + ++C ++VGG+ T Q AL P I
Sbjct: 78 KPSGLFG---LVLAPTRELAVQISDQIEALGAVIGVKCAVLVGGIDTMSQSMALAKKPHI 134
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+V TPGR++ HL N+ +L L ++DEADRLL + F EI+ ++++ PK R T LFS
Sbjct: 135 IVGTPGRVVYHLENTKGFNLKTLKYFVMDEADRLLGMDFEEEINTILKVIPKDRNTFLFS 194
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T V +L + SL P+++ TL +E + I ++E L + ++
Sbjct: 195 ATMTSKVAKLQRASLNDPVKIQVATKYSTVDTLQQEYIFIPYK---HKECYLTYILNELA 251
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+ VIIF+ T A+ +L I+ + KA ++G + Q++RL +L F+ Q +D L+ATDV
Sbjct: 252 GNSVIIFTSTCAASTKLAIMLRNLSFKAIPINGQMDQSKRLSSLNKFKAQTMDILVATDV 311
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
AARGLDI V VINY P Y+HRVGRTARAGR G AVT VT D + I
Sbjct: 312 AARGLDIPSVDLVINYDVPVSSKEYMHRVGRTARAGRTGRAVTLVTQYDVEIYLRIEHAL 371
Query: 363 GSKLKSRIVAEQSITKWSK 381
KL+ ++S+ +S+
Sbjct: 372 EQKLEEFPTEQESVLVFSE 390
>gi|410901863|ref|XP_003964414.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Takifugu
rubripes]
Length = 471
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 150/376 (39%), Positives = 218/376 (57%), Gaps = 8/376 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG+ PT IQ +P+AL G+D+ G A TGSGKT AFALP L+ LL
Sbjct: 42 DLGVTEVLCEACDQLGWKSPTKIQIEAVPVALQGKDVIGLAETGSGKTGAFALPILQSLL 101
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ L+LTPTRELA Q+ E + ++C ++VGG+ Q L P
Sbjct: 102 ASPQRL---HTLVLTPTRELAFQISEQFEALGSSIGVKCAVIVGGIDMMSQSLVLAKKPH 158
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR+IDHL N+ L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 159 IVIATPGRLIDHLENTKGFTLRALKFLVMDEADRILNMDFETEVDKILKVIPRERRTFLF 218
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + L + + I + ++ ++L L
Sbjct: 219 SATMTKKVQKLQRAALKDPVKCAVSTKYSTVDKLQQYYIFIPSKYKDCYLVSILNDLAGN 278
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F IIF T A R+ +L + A LHG ++Q +RL AL F+ + L+AT
Sbjct: 279 SF----IIFCSTCNNAQRVALLLRNLGITAISLHGQMSQNKRLGALNKFKSKSRSVLLAT 334
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V VINY P Y+HRVGRTARAGR G ++TFVT D L + I
Sbjct: 335 DVASRGLDIPHVDCVINYDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIES 394
Query: 361 RAGSKLKSRIVAEQSI 376
G KL + E+ +
Sbjct: 395 LIGKKLPAFPTQEEEV 410
>gi|254565677|ref|XP_002489949.1| Protein involved in rRNA processing [Komagataella pastoris GS115]
gi|238029745|emb|CAY67668.1| Protein involved in rRNA processing [Komagataella pastoris GS115]
gi|328350360|emb|CCA36760.1| ATP-dependent RNA helicase [Komagataella pastoris CBS 7435]
Length = 478
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 157/397 (39%), Positives = 224/397 (56%), Gaps = 6/397 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L +L ACE L Y+KPTPIQA IP AL GRDI G A TGSGKTAAFA+P L+ L
Sbjct: 76 DFGLVPEILEACEKLKYTKPTPIQAESIPYALKGRDIIGLAQTGSGKTAAFAIPVLQSLY 135
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
++ +L PTRELA Q+ + + +R +VGG+ Q L P
Sbjct: 136 ---EQATPFFCCVLAPTRELAYQIKETFDSLGSGMGLRSVCIVGGMDMIDQAKDLMRKPH 192
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++DHL N+ L L LI+DEADRLL+L F I ++++L P+ R T LF
Sbjct: 193 VIVATPGRLMDHLENTKGFSLKALKYLIMDEADRLLDLEFGPAIDKVLKLIPRERSTYLF 252
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T +++L + SL P+++S + + ST+ + + + + + L+ L +K
Sbjct: 253 SATMTNKIEKLQRASLVDPIKVSV---SSKYSTVDSLIQSLMVVPDGYKNTFLIYLLNKY 309
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+IIF+ T A R +L L A LHG L Q+QRL AL F+ + L+ATD
Sbjct: 310 QNKSIIIFTRTCAHAQRTALLARLMDFSAIPLHGQLNQSQRLGALNKFKARERTILVATD 369
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V VIN+ P D +Y+HRVGRTARAGR G +++ VT D L+ +
Sbjct: 370 VAARGLDIPMVDVVINFDIPTDSKAYIHRVGRTARAGRSGRSISLVTQYDLELILRVESV 429
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEER 398
G KL + I +E+ ++ ++E +
Sbjct: 430 LGMKLPKDVPPRDEILSLHNTVEKFHNEAVRQIKEHQ 466
>gi|164661763|ref|XP_001732004.1| hypothetical protein MGL_1272 [Malassezia globosa CBS 7966]
gi|159105905|gb|EDP44790.1| hypothetical protein MGL_1272 [Malassezia globosa CBS 7966]
Length = 470
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 157/365 (43%), Positives = 212/365 (58%), Gaps = 6/365 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + P+ ACE L +S PT IQA IP AL GRD+ G A TGSGKTAAF++P L+ L
Sbjct: 29 DLGVIEPICEACEKLHFSAPTDIQAQAIPHALQGRDVIGLAQTGSGKTAAFSIPILQGLW 88
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ + A IL PTREL+ Q+ IE + +RC +VGG+ Q AL P
Sbjct: 89 DDPRPLFAC---ILAPTRELSYQISQQIEALGATIGVRCATIVGGMDMMTQSIALSKRPH 145
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR+ DHL N+ L L L++DEADRLL+L F I +L++ PK R+TMLF
Sbjct: 146 VIVATPGRLQDHLENTKGFSLRSLRYLVMDEADRLLDLDFGPIIDKLLQNIPKERRTMLF 205
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T V +L + SL P+R+ STL + + M +++ L+ L ++
Sbjct: 206 SATMTTKVAKLQRASLRNPVRIEIGTKYSTVSTLQQYYL---FMPFAHKDTYLVHLANEQ 262
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+I+F+ T A RL +L L A LHG L+Q RL AL F+ ++ TD
Sbjct: 263 VGHSIIVFTRTVHDAQRLAVLLRLLGFSAIPLHGQLSQTARLGALNKFKAGGRSIMVCTD 322
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V V+N+ P Y+HRVGRTARAGR+G +VT VT D LL+ I
Sbjct: 323 VAARGLDIPAVDLVVNFDIPTHSKDYIHRVGRTARAGRQGRSVTLVTQYDVELLQRIEAA 382
Query: 362 AGSKL 366
G +L
Sbjct: 383 IGKRL 387
>gi|254580545|ref|XP_002496258.1| ZYRO0C14234p [Zygosaccharomyces rouxii]
gi|238939149|emb|CAR27325.1| ZYRO0C14234p [Zygosaccharomyces rouxii]
Length = 494
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 157/366 (42%), Positives = 215/366 (58%), Gaps = 7/366 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+LNL L+ AC+ L + KPTPIQA IP AL GRDI G A TGSGKTAAFA+P L RL
Sbjct: 76 DLNLVPELIEACKNLNFDKPTPIQARAIPPALEGRDIIGLAQTGSGKTAAFAIPILNRLW 135
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ A +L PTRELA Q + + +R +VGG++ Q L P
Sbjct: 136 EDKQPYYAC---VLAPTRELAQQTKETFDSLGALMGVRSTCIVGGMNMMDQARELMRKPH 192
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR-RQTML 180
I++ATPGR++DHL N+ L L L++DEADRLL++ F + +++++ P + R T L
Sbjct: 193 IIIATPGRLMDHLENTKGFSLRKLRFLVMDEADRLLDMEFGPVLDKILKVIPTQDRTTYL 252
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T +D+L + SLT+P++ + + TL + ++ + + L+ L ++
Sbjct: 253 FSATMTSKIDKLQRASLTEPVKCAVSNKYQTVDTLVQTLMVVPSGL---KNTYLIYLLNE 309
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
VIIF+ TK A RL L L A LHG+L Q QR AL+LF+ L+AT
Sbjct: 310 NIGKTVIIFTRTKANAERLSALCNLLEFNATALHGDLNQNQRTGALDLFKAGRRSILVAT 369
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V VINY P D SY+HRVGRTARAGR G +++ V+ D L+ I +
Sbjct: 370 DVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 429
Query: 361 RAGSKL 366
G KL
Sbjct: 430 VLGKKL 435
>gi|260943624|ref|XP_002616110.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238849759|gb|EEQ39223.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 477
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 144/350 (41%), Positives = 215/350 (61%), Gaps = 6/350 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L LL A +++ ++KPTPIQA IP AL G+D+ G A+TGSGKTAAFA+P L+ L
Sbjct: 69 ELKLIPELLEAIQSMKFTKPTPIQAEAIPHALEGKDVIGLAVTGSGKTAAFAIPILQSLW 128
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ ++P L+L+PTRELA Q+ + + +R C +VGG+ Q L P
Sbjct: 129 H--DQLP-YYCLVLSPTRELAYQIKDTFDALGSGMGLRACCIVGGMDMMDQARDLMRKPH 185
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++DHL ++ L +L L++DEADRLL+L F E+ +++R+ P+ R T LF
Sbjct: 186 VIVATPGRIVDHLEHTKGFSLKNLKYLVMDEADRLLDLDFGPELDKILRVIPRERNTYLF 245
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T +++L + SL P+R++ + L + ++ + + + L+ L ++
Sbjct: 246 SATMTNKIEKLQRASLNNPVRIAVSSKYQTADNLVQSMMLV---SDGYKNTYLVHLLNEF 302
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+IIF+ T + R +L + A LHG L+Q+QRL +L F+ + L+ATD
Sbjct: 303 VGKSIIIFTRTCAHSQRTALLARILGFSAVPLHGQLSQSQRLGSLNKFKSGKANILVATD 362
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
VAARGLDI V VINY P D +Y+HRVGRTARAGR G +++ VT D
Sbjct: 363 VAARGLDIPAVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLVTQYD 412
>gi|422293255|gb|EKU20555.1| dead deah box rna, partial [Nannochloropsis gaditana CCMP526]
Length = 414
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 155/376 (41%), Positives = 221/376 (58%), Gaps = 8/376 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L + +PL AC A+G++KPT IQ IP AL GRD+ G A TGSGKT AFALP L+ LL
Sbjct: 39 LGVVKPLCEACAAIGWTKPTGIQQQAIPAALQGRDVIGLAETGSGKTGAFALPVLQALLA 98
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+P+R+ A+ +L PTRELA Q+H + E + ++ C VVGG+ Q AL P +
Sbjct: 99 KPQRLFAV---VLAPTRELAFQIHEVFEALGASIGLKSCCVVGGVDMMTQAIALARKPHV 155
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP--KRRQTML 180
VVATPGR++DHL N+ + + L+LDEADR+L + F EI++++ + P K R+T+L
Sbjct: 156 VVATPGRLVDHLENTKGFHIREARFLVLDEADRMLSMDFEEEINKILAIMPTGKHRRTLL 215
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T V +L + SLT P+++ A P TL ++ + I ++ L ++
Sbjct: 216 FSATMTSKVAKLQRASLTDPVKVEASDKFTTPRTLVQQYLFIPAKY---KDCYLAYALNE 272
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+++F T A RL +L A LHG +TQ +RL AL F+ LIAT
Sbjct: 273 AAGQTILVFVATCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIAT 332
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++ VT D + + +
Sbjct: 333 DVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARAGRAGRSIAMVTQYDVEVYQRLEA 392
Query: 361 RAGSKLKSRIVAEQSI 376
G+KL E+++
Sbjct: 393 LLGTKLPEYKTDEETV 408
>gi|348569354|ref|XP_003470463.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Cavia porcellus]
Length = 455
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 151/366 (41%), Positives = 217/366 (59%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IP+AL GRDI G A TGSGKT AFALP L LL
Sbjct: 27 DLGVTDVLCEACDQLGWAKPTKIQIEAIPMALQGRDIIGLAETGSGKTGAFALPILNALL 86
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++C ++VGG+ + Q AL P
Sbjct: 87 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH 143
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 144 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 203
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 204 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGN 263
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 264 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 319
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 320 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 379
Query: 361 RAGSKL 366
G KL
Sbjct: 380 LIGKKL 385
>gi|448535294|ref|XP_003870949.1| Rrp3 protein [Candida orthopsilosis Co 90-125]
gi|380355305|emb|CCG24822.1| Rrp3 protein [Candida orthopsilosis]
Length = 481
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 146/365 (40%), Positives = 217/365 (59%), Gaps = 6/365 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNL LL A + + ++KPTPIQ+ IP AL G+DI G A+TGSGKTAAFA+P L+ L
Sbjct: 75 ELNLVPDLLEAIQQMNFAKPTPIQSEAIPHALEGKDIIGLAVTGSGKTAAFAIPILQALW 134
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + P L+L PTRELA Q+ + + +R +VGG+ Q L P
Sbjct: 135 H--AQTPYFG-LVLAPTRELAFQIKDTFDALGATMGLRSVCIVGGMDMMDQARDLMRKPH 191
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL ++ L +L L++DEADRLL++ F + +++++ P +R T LF
Sbjct: 192 IIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPPKRTTYLF 251
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T +++L + SL P+R++ + L + ++ + + + +L+ L ++
Sbjct: 252 SATMTNKIEKLQRASLHNPVRVAVSTKYQTADNLVQSMMLVN---DGYKNTILIHLLNEF 308
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+I+F+ T A R +L + A LHG L+QAQRL +L F+ + L+ATD
Sbjct: 309 MGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQAQRLGSLNKFKSSKANILVATD 368
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V VINY P D +Y+HRVGRTARAGR G +++ +T D + I
Sbjct: 369 VAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRIENA 428
Query: 362 AGSKL 366
G KL
Sbjct: 429 LGKKL 433
>gi|189205104|ref|XP_001938887.1| ATP-dependent rRNA helicase rrp3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985986|gb|EDU51474.1| ATP-dependent rRNA helicase rrp3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 517
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 158/379 (41%), Positives = 220/379 (58%), Gaps = 13/379 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L ACE L + PTPIQ IPLAL GRD+ G A TGSGKTAAF LP L+ LL
Sbjct: 91 DLGVREELCDACENLKFKNPTPIQTQAIPLALEGRDVIGLAETGSGKTAAFVLPILQSLL 150
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + LIL PTRELA Q+ ++ + +++C +VGG+ Q AL P
Sbjct: 151 EKPQPLFG---LILAPTRELAYQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPH 207
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR-RQTML 180
IVVATPGR++DHL N+ L L ++LDEADRLL+L F + +++++ P+ R T L
Sbjct: 208 IVVATPGRLLDHLENTKGFSLKHLKYMVLDEADRLLDLDFGPVLDKILKVLPREGRHTYL 267
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCS 239
FSAT++ V+ L + +L P+R+S S+ + STL + R + ++ L+ L +
Sbjct: 268 FSATMSSKVESLQRAALQNPVRVSISSSSHQVVSTLLQ---RYAFIPHKYKDLYLVHLLN 324
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
IIF+ T R+ +L A LHG L+Q+ RL AL F+ + D L+A
Sbjct: 325 DNIGHPTIIFTRTVNETQRIAVLLRALGFGAIPLHGQLSQSARLGALNKFKSKSRDILVA 384
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVAARGLDI V ++N+ P D +YVHRVGRTARAG+ G AV+FVT D + I
Sbjct: 385 TDVAARGLDIPAVDLIVNFDLPSDSQTYVHRVGRTARAGKSGKAVSFVTQYDLEIWLRIE 444
Query: 360 KRAGSKLKSRIVAEQSITK 378
G K + EQ+ K
Sbjct: 445 HALGKK-----IPEQTFDK 458
>gi|207344698|gb|EDZ71756.1| YHR065Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 496
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 155/370 (41%), Positives = 218/370 (58%), Gaps = 7/370 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNL L++AC+ L YSKPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L RL
Sbjct: 127 ELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLW 186
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + A IL PTRELA Q+ + + +R +VGG++ Q L P
Sbjct: 187 HDQEPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 243
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQTML 180
I++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R T L
Sbjct: 244 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 303
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L ++
Sbjct: 304 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL---KNTYLIYLLNE 360
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+IIF+ TK A RL L L A LHG+L Q QR+ AL+LF+ L+AT
Sbjct: 361 FIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVAT 420
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V V+NY P D SY+HRVGRTARAGR G +++ V+ D L+ I +
Sbjct: 421 DVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 480
Query: 361 RAGSKLKSRI 370
G + ++
Sbjct: 481 VLGKNYRRKV 490
>gi|344243858|gb|EGV99961.1| putative ATP-dependent RNA helicase DDX47 [Cricetulus griseus]
Length = 586
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 151/359 (42%), Positives = 213/359 (59%), Gaps = 8/359 (2%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 68
L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL P+R+
Sbjct: 166 LCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLF 225
Query: 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 128
A L+LTPTRELA Q+ E + ++C ++VGG+ + Q AL P IV+ATPG
Sbjct: 226 A---LVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSIALAKKPHIVIATPG 282
Query: 129 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 188
R+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LFSAT+T+
Sbjct: 283 RLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKK 342
Query: 189 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSKTFTSKVI 247
V +L + +L P++ + + L + + I + ++ +L L +F +
Sbjct: 343 VQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSF----M 398
Query: 248 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 307
IF T R +L A LHG ++Q++RL +L F+ + L+ATDVA+RGL
Sbjct: 399 IFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGL 458
Query: 308 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 366
DI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I G KL
Sbjct: 459 DIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKL 517
>gi|17555296|ref|NP_499069.1| Protein T26G10.1 [Caenorhabditis elegans]
gi|465975|sp|P34580.1|DDX47_CAEEL RecName: Full=Putative ATP-dependent RNA helicase T26G10.1
gi|3880293|emb|CAA82362.1| Protein T26G10.1 [Caenorhabditis elegans]
Length = 489
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 151/375 (40%), Positives = 216/375 (57%), Gaps = 6/375 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL +S+PL AC+ LG+ KP+ IQ A +P AL G+D+ G A TGSGKT AFA+P L+ LL
Sbjct: 48 ELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLL 107
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ A L+LTPTRELA Q+ E + + ++VGG+ Q AL P
Sbjct: 108 DHPQ---AFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPH 164
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ +L L LI+DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 165 IIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRTYLF 224
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ V +L + SL P R+S K L + + + +E L+ L ++
Sbjct: 225 SATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNKY---KETYLVYLLNEH 281
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ I+F T ++ ++ ++A LHG ++Q +RL +L F+ + + L+ TD
Sbjct: 282 AGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTD 341
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V VINY P YVHRVGRTARAGR G A+T VT D + I
Sbjct: 342 VAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKIEAN 401
Query: 362 AGSKLKSRIVAEQSI 376
G KL E +
Sbjct: 402 LGKKLDEYKCVENEV 416
>gi|254472453|ref|ZP_05085853.1| ATP-dependent rna helicase, dead/deah box family [Pseudovibrio sp.
JE062]
gi|211958736|gb|EEA93936.1| ATP-dependent rna helicase, dead/deah box family [Pseudovibrio sp.
JE062]
Length = 453
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 155/371 (41%), Positives = 234/371 (63%), Gaps = 14/371 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L +++P A ++ GYS+PTPIQ IP L G+D+ G A TG+GKTAAFA+P L+RLL
Sbjct: 6 KLGVAKPFQIALKSKGYSEPTPIQENAIPYILDGKDLLGLAQTGTGKTAAFAVPLLQRLL 65
Query: 62 ---YR--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 116
YR PK ++R LILTPTRELA Q+ I+ A T + VVGG+ Q AL
Sbjct: 66 ESRYRAAPK---SVRSLILTPTRELADQITKNIKAYAGRTKMYTSCVVGGVPFPPQFHAL 122
Query: 117 RSMPDIVVATPGRMID-HLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
+ D++VATPGR++D H +N +S D+L + +LDEAD++L+LGF AE+ E+ L PK+
Sbjct: 123 QRGLDVLVATPGRLLDLHRKNGVS--FDELEIFVLDEADQMLDLGFIAELEEIAYLLPKK 180
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQT+ FSAT+ ++ +L + LT P+ +S P A T+T+++ + + + +L
Sbjct: 181 RQTLFFSATMPREIRDLSERFLTNPVEVSTAPPATTVETVTQQIAHLEKDAKF---PLLK 237
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
L K + ++F+ TK+ + RL + A +HG+++QA+R + L+ F++ +
Sbjct: 238 ELLEKDECERALVFTLTKKGSARLAARLNADGVPAEAIHGDMSQAERQKTLDKFKRGKLK 297
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARG+D+ + VIN+ P +YVHR+GRTARAG+ G A+TF DR +L
Sbjct: 298 TLVATDVAARGIDVSDISHVINFDMPNATENYVHRIGRTARAGKSGTAITFCLPEDRGML 357
Query: 356 KAIAKRAGSKL 366
+AI K G K+
Sbjct: 358 RAIQKLIGKKI 368
>gi|351711397|gb|EHB14316.1| Putative ATP-dependent RNA helicase DDX47 [Heterocephalus glaber]
Length = 454
Score = 282 bits (721), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 217/366 (59%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IP+AL GRDI G A TGSGKT AFALP L LL
Sbjct: 27 DLGVTDVLCEACDQLGWTKPTKIQIEAIPMALQGRDIIGLAETGSGKTGAFALPILNALL 86
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++C ++VGG+ + Q AL P
Sbjct: 87 DTPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH 143
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+V+ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 144 VVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 203
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 204 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGN 263
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 264 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 319
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 320 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 379
Query: 361 RAGSKL 366
G KL
Sbjct: 380 LIGKKL 385
>gi|50291507|ref|XP_448186.1| hypothetical protein [Candida glabrata CBS 138]
gi|74661162|sp|Q6FNK8.1|RRP3_CANGA RecName: Full=ATP-dependent rRNA helicase RRP3
gi|49527497|emb|CAG61137.1| unnamed protein product [Candida glabrata]
Length = 493
Score = 282 bits (721), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 159/401 (39%), Positives = 228/401 (56%), Gaps = 7/401 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+LNL L++AC+ L ++KPTPIQA IP AL G D+ G A TGSGKTAAFA+P L +L
Sbjct: 77 QLNLVPELIQACQNLNFTKPTPIQARAIPPALAGSDVIGLAQTGSGKTAAFAIPILNKLW 136
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ A +L PTRELA Q+ + + +R +VGG++ Q L P
Sbjct: 137 EDQQPYYAC---VLAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKPH 193
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQTML 180
I++ATPGR++DHL N+ L +L L++DEADRLL++ F + ++++ P K R T L
Sbjct: 194 IIIATPGRLMDHLENTKGFSLKNLKFLVMDEADRLLDMEFGPVLDRILKIIPTKGRTTYL 253
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L ++
Sbjct: 254 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL---KNTFLIYLLNE 310
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
VIIF+ TK A RL L L A LHG+L Q QR AL+LF+ L+AT
Sbjct: 311 FIGKTVIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVAT 370
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V VINY P D SY+HRVGRTARAGR G +++ V+ D L+ I +
Sbjct: 371 DVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 430
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 401
G KL V + I +++ +V + +E+
Sbjct: 431 VLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEK 471
>gi|11121196|emb|CAC14786.1| DEAD box protein [Homo sapiens]
Length = 455
Score = 282 bits (721), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 216/366 (59%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 28 DLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 87
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL P
Sbjct: 88 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 265 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKESSILLAT 320
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 321 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 380
Query: 361 RAGSKL 366
G KL
Sbjct: 381 LIGKKL 386
>gi|313228985|emb|CBY18137.1| unnamed protein product [Oikopleura dioica]
Length = 451
Score = 281 bits (720), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 148/364 (40%), Positives = 216/364 (59%), Gaps = 4/364 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L + + + C L +SKPTPIQ IP+A+ G+D+ G A TGSGKTAAFA+P L+ LL
Sbjct: 29 LGVCDEVAQTCVDLKWSKPTPIQQKSIPIAIEGKDVIGLAETGSGKTAAFAIPVLQTLLK 88
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P + L++TPTRELA Q+ + + + C +VGG+ Q+ AL P +
Sbjct: 89 TPGG-GRLSCLVMTPTRELAFQIREQFQALGSSIGLSCACIVGGIEMMSQQLALAKKPHV 147
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+VATPGR++DHL + +L L LI+DEADR+L L F AE+ +++R P+ RQTMLFS
Sbjct: 148 IVATPGRLVDHLEKTRGFNLKALKFLIMDEADRILNLDFEAEVDKILRAIPRERQTMLFS 207
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T V +L + +L P+++S + K T+ + + + + E ++E L+SL ++
Sbjct: 208 ATMTAKVKKLQRAALKNPVKISINSKYK---TVDKNIQKYMFIPEAHKECYLVSLLNELQ 264
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
S +IF+ T + L + LHG ++Q +RL AL F+ + L+ TDV
Sbjct: 265 GSSFMIFTSTCAKTSLIARLVKRLGYDSVPLHGQMSQQKRLGALARFKGKSRSILVCTDV 324
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLD+ V VINY P + Y+HRVGRTARAGR G +VTFV+ D L + I
Sbjct: 325 ASRGLDVPHVDCVINYDVPTNTKDYIHRVGRTARAGRAGKSVTFVSQYDVELYQKIEAHI 384
Query: 363 GSKL 366
G KL
Sbjct: 385 GKKL 388
>gi|296132950|ref|YP_003640197.1| DEAD/DEAH box helicase [Thermincola potens JR]
gi|296031528|gb|ADG82296.1| DEAD/DEAH box helicase domain protein [Thermincola potens JR]
Length = 529
Score = 281 bits (720), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 168/396 (42%), Positives = 236/396 (59%), Gaps = 22/396 (5%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LSR +L+A + +G+ +PTPIQA IP+ L G D+ G A TG+GKTAAF +P LE+L
Sbjct: 10 LQLSRRILQAVKEMGFEEPTPIQAEAIPVLLNGHDVIGQAQTGTGKTAAFGIPILEKL-- 67
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P R A++ L++TPTRELA+QV I K+ +F D+R V GG S Q AL+ +
Sbjct: 68 NP-RYRAVQALVITPTRELAIQVAEEIMKLGKFKDVRTLAVYGGQSIDRQIGALKRGVQV 126
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
VV TPGR++DH+ N ++ L L +L+LDEAD +L++GF +I +++ P+ RQT+LFS
Sbjct: 127 VVGTPGRLLDHI-NRGTLRLQHLKMLVLDEADEMLDMGFIDDIEAIIKETPETRQTLLFS 185
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+ ++ +L + L P RL A + E+V EV ++ L SLC
Sbjct: 186 ATMPHEIQQLARKYLKNP-RLVAVSKDELTVPSIEQV-----YYEVREKTKLESLCRVLE 239
Query: 243 TSKV---IIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
T V IIF TK+ L +A LHG+LTQAQR + + F+ VD+L+A
Sbjct: 240 TIDVTLAIIFCKTKRGVDELVASLETRGYQAEGLHGDLTQAQRNKVMRKFKNGQVDYLVA 299
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVAARGLDI V VINY P+D YVHR+GRT RAGR G A+TF+ + L+ I
Sbjct: 300 TDVAARGLDIENVSHVINYDIPQDPEVYVHRIGRTGRAGRSGKAITFIVPEEYRQLRLIE 359
Query: 360 KRAGSKLKSRIVAEQSITKWSKIIE----QMEDQVA 391
K G++ +A +++ + I E QM D+VA
Sbjct: 360 KIIGAR-----IARKNLPSIADIFERQKVQMIDKVA 390
>gi|237747736|ref|ZP_04578216.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
gi|229379098|gb|EEO29189.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
Length = 469
Score = 281 bits (720), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 224/365 (61%), Gaps = 11/365 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ LS +L+A + LGY PTPIQ IPL L G+D+ G+A TG+GKTA ++LP L+ LL
Sbjct: 19 DFGLSPDILKALDDLGYVSPTPIQVQAIPLVLEGKDVMGAAQTGTGKTAGYSLPMLQSLL 78
Query: 62 YR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
+ P R P +R LIL PTRELA QV +++ A++T ++ +V GG+ Q +
Sbjct: 79 FSANTSMSPARHP-VRALILVPTRELADQVFEDVKRYAKYTPVKSAVVFGGVDISSQTSI 137
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR+ +I++ATPGR++DH++ +V+L +L+LDEADR+L++GF ++ +V L PK+
Sbjct: 138 LRAGVEILIATPGRLLDHVQQK-NVNLSHTQILVLDEADRMLDMGFLPDLQRIVNLLPKQ 196
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQ +LFSAT + D+ +L + + P+ + A++ +T + R+ E + A +
Sbjct: 197 RQNLLFSATFSNDIKKLARSFMKDPVTVEV---ARQNATAENVKQTVYRIEESEKNAAVE 253
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
L +V+IFS TK A RL +KA+ +HG+ TQA+R+ LE F+ +D
Sbjct: 254 HLLKDRNQEQVLIFSNTKAGASRLARQLERKGMKASAIHGDKTQAERMATLEAFKSGSID 313
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARGL I + VIN+ P YVHR+GRT RAG +G A++ ++ D LL
Sbjct: 314 ILVATDVAARGLHIEELPCVINFDLPFVAEDYVHRIGRTGRAGSKGEAISLYSEKDERLL 373
Query: 356 KAIAK 360
K I K
Sbjct: 374 KEIEK 378
>gi|432871164|ref|XP_004071864.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Oryzias latipes]
Length = 488
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 148/375 (39%), Positives = 218/375 (58%), Gaps = 6/375 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG+ PT IQ IP+AL G+D+ G A TGSGKT AFALP L+ LL
Sbjct: 43 DLGVTDVLCEACDQLGWKSPTKIQVEAIPVALQGKDVIGLAETGSGKTGAFALPILQSLL 102
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ L+LTPTRELA Q+ E + ++C ++VGG+ Q L P
Sbjct: 103 ASPQRL---HTLVLTPTRELAFQISEQFEALGSSIGVKCAVIVGGIDMMSQSLVLAKKPH 159
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR+IDH+ N+ L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 160 IVIATPGRLIDHMENTKGFSLRALKFLVMDEADRILNMDFETEVDKILKVIPRERRTFLF 219
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ V +L + +L P++ + L + V I ++ L+S+ ++
Sbjct: 220 SATMTKKVQKLQRAALKDPVKCAVSTKYSTVDKLQQYYVFIPAKY---KDCYLVSILNEL 276
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ +IF T A R+ ++ + A LHG ++Q +RL AL F+ + L+ATD
Sbjct: 277 AGNSFMIFCSTCNNAQRVALMLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLLATD 336
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V VINY P Y+HRVGRTARAGR G ++TFVT D L + I
Sbjct: 337 VASRGLDIPHVDCVINYDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIESL 396
Query: 362 AGSKLKSRIVAEQSI 376
G KL + E+ +
Sbjct: 397 IGKKLPAFPTQEEEV 411
>gi|452839340|gb|EME41279.1| hypothetical protein DOTSEDRAFT_73630 [Dothistroma septosporum
NZE10]
Length = 513
Score = 281 bits (719), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 155/400 (38%), Positives = 228/400 (57%), Gaps = 2/400 (0%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL + L AC LG++KPT IQ IP+AL G+DI G A TGSGKTAAFALP L+ L+
Sbjct: 87 ELGVIDQLCDACANLGFTKPTAIQKESIPIALEGKDIIGLAETGSGKTAAFALPILQALM 146
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ L+L PTRELA Q+ E + ++RC ++VGG+ Q AL P
Sbjct: 147 AAPQHEQHKFGLVLAPTRELAYQISQQFEALGSLINVRCAVLVGGMDMVPQAIALNKNPH 206
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IVVATPGR++DHL N+ + L L++DEADRLL+L F + +++++ P +R+TMLF
Sbjct: 207 IVVATPGRLLDHLENTKGFSMRSLKYLVMDEADRLLDLDFGPILDKILQVLPSKRRTMLF 266
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++ ++ L + +L P+R+S S+ + T+ + R + ++ L+ L ++
Sbjct: 267 SATMSTKLNNLTRAALQNPVRVSISSSSYQ--TVKNLMQRYIFIPHKFKDIYLVYLLNEF 324
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
I+F+ T R+ L A LHG + Q+ RL AL FR + L+ATD
Sbjct: 325 AGQTCIVFTRTINETQRIAFLLRALGRSAIPLHGQMNQSARLGALNKFRGGSREILVATD 384
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V V+N+ P D +YVHRVGRTARAG+ G A++ VT D + + I K
Sbjct: 385 VAARGLDIPSVDLVLNFDLPPDSKTYVHRVGRTARAGKSGVAISVVTQYDIEIYQRIEKA 444
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 401
G KL + ++ + + + ++ E E+R
Sbjct: 445 LGKKLDEYAAERDEVMVFAPRVAEAQRIAITEMKNEHEKR 484
>gi|268573560|ref|XP_002641757.1| Hypothetical protein CBG10097 [Caenorhabditis briggsae]
Length = 486
Score = 281 bits (719), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 153/375 (40%), Positives = 216/375 (57%), Gaps = 6/375 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL +S+PL AC LG++KP+ IQ A +P AL G+D+ G A TGSGKT AFA+P L+ LL
Sbjct: 48 ELGVSQPLCDACLRLGWTKPSKIQQAALPHALEGKDVIGLAETGSGKTGAFAIPVLQSLL 107
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ A L+LTPTRELA Q+ E + + ++VGG+ Q AL P
Sbjct: 108 DHPQ---AFFCLVLTPTRELAFQIGQQFEALGSGIGLIVAVIVGGVDMAAQAMALARRPH 164
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ +L L LI+DEADR+L + F E+ +++++ PK R+T LF
Sbjct: 165 IIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPKERRTYLF 224
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ V +L + SL P R+S K L + + I +E L+ L ++
Sbjct: 225 SATMTKKVSKLERASLRDPARVSISTRYKTVDNLKQHYIFIPNKY---KETYLVYLLNEH 281
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ I+F T ++ ++ ++A LHG ++Q +RL +L F+ + + L+ TD
Sbjct: 282 AGNSAIVFCATCATTMQVAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTD 341
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V VINY P YVHRVGRTARAGR G A+T VT D + I
Sbjct: 342 VAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGLAITVVTQYDVEAYQKIEAN 401
Query: 362 AGSKLKSRIVAEQSI 376
G KL E +
Sbjct: 402 LGKKLDEYKCVENEV 416
>gi|393245773|gb|EJD53283.1| DEAD-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 463
Score = 281 bits (719), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 157/356 (44%), Positives = 213/356 (59%), Gaps = 8/356 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L PLL A + L +++PT IQAA +P AL G DI G A TGSGKTAAFALP L++L
Sbjct: 29 ELGLIEPLLEALDKLSFARPTEIQAAALPHALAGHDIIGVAETGSGKTAAFALPILQKLW 88
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ + A + PTRELA Q+ E + +R +++GG+ Q+ AL P
Sbjct: 89 EDPRPLFAC---CIAPTRELAFQIAQSFEALGGSLGVRVAVIIGGVKEIEQQIALSKRPH 145
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VA PGR+ HL N+ L L L+LDEADRLL+L F +I +L+++ PK R T LF
Sbjct: 146 IIVAAPGRLNWHLENTKGFSLRTLKYLVLDEADRLLDLDFGKDIDKLLKVLPKERHTYLF 205
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSK 240
SAT+T+ V++L + SL+ P R++ STL + + + +EVN L+ LC+
Sbjct: 206 SATMTDKVEKLQRASLSNPKRVAVSSKYSTVSTLLQYYLLVPLPQKEVN----LIYLCNS 261
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+IIF+ T+ A R+ I+ A LHG L+Q+ RL AL F+ L+AT
Sbjct: 262 LAEKSIIIFTRTQHDAQRVSIILRTLGFSAVPLHGALSQSARLGALAKFKAGGRKILVAT 321
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 356
DVA+RGLDI V VINY P + Y+HRVGRTARAGR G +VTFVT D + K
Sbjct: 322 DVASRGLDIPHVDIVINYDVPTNSKDYIHRVGRTARAGRAGKSVTFVTQYDVEVFK 377
>gi|354548378|emb|CCE45114.1| hypothetical protein CPAR2_701180 [Candida parapsilosis]
Length = 478
Score = 281 bits (719), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 147/365 (40%), Positives = 217/365 (59%), Gaps = 6/365 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNL LL A + + ++KPTPIQ+ IP AL G+DI G A+TGSGKTAAFA+P L+ L
Sbjct: 72 ELNLVPDLLEAIQQMKFTKPTPIQSEAIPHALEGKDIIGLAVTGSGKTAAFAIPILQALW 131
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + P L+L PTRELA Q+ + + +R +VGG+ Q L P
Sbjct: 132 H--AQTPYFG-LVLAPTRELAFQIKDTFDALGTTMGLRSVCIVGGMDMMDQARDLMRKPH 188
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IVVATPGR++DHL ++ L +L L++DEADRLL++ F + +++++ P +R T LF
Sbjct: 189 IVVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPPKRTTYLF 248
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T +++L + SL P+R++ + L + ++ + + + +L+ L ++
Sbjct: 249 SATMTNKIEKLQRASLHNPVRVAVSTKYQTADNLVQSMMLVN---DGYKNTILIHLLNEF 305
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+I+F+ T A R +L + A LHG L+QAQRL +L F+ + L+ATD
Sbjct: 306 MGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQAQRLGSLNKFKSGKANILVATD 365
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V VINY P D +Y+HRVGRTARAGR G +++ +T D + I
Sbjct: 366 VAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRIENA 425
Query: 362 AGSKL 366
G KL
Sbjct: 426 LGKKL 430
>gi|425769747|gb|EKV08230.1| ATP-dependent RNA helicase , putative [Penicillium digitatum Pd1]
gi|425771396|gb|EKV09840.1| ATP-dependent RNA helicase , putative [Penicillium digitatum PHI26]
Length = 494
Score = 281 bits (719), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 154/365 (42%), Positives = 218/365 (59%), Gaps = 5/365 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L L AC+ +GY PTPIQ+ IPLAL GRDI G A TGSGKTA+F LP L+ L+
Sbjct: 76 ELGLIDSLCEACDKMGYKAPTPIQSESIPLALQGRDIIGLAETGSGKTASFVLPILQALM 135
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ L++ PTRELA Q+ E + ++R +VGG+ Q AL P
Sbjct: 136 EKPQPFFG---LVMAPTRELAYQISLACESLGATINVRSTTLVGGMDMVPQSIALGKKPH 192
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L +L L++DEADRLL++ F + +++++ P+ R+T LF
Sbjct: 193 IIVATPGRLLDHLENTKGFSLRNLKFLVMDEADRLLDMDFGPILDKILKVLPRERRTFLF 252
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SATL+ V+ L + SL+ P R+S S+K + T + I R + +++ L+ L +
Sbjct: 253 SATLSSKVESLQRASLSNPARVSIS-SSKYATVETLQQTYILRPYK-HKDIYLVYLLHEF 310
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
VIIF T R+ L A LHG ++Q+ RL AL FR + + L+ATD
Sbjct: 311 IGQSVIIFMRTVHETQRVAFLLRGLGFGAIPLHGQMSQSARLGALGKFRSKSREILVATD 370
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V V+N+ P D +Y+HRVGRTARAG+ G A++FVT D + + I
Sbjct: 371 VAARGLDIPSVDCVLNFDLPTDSKTYIHRVGRTARAGKSGTAISFVTQYDVEIWQRIEAA 430
Query: 362 AGSKL 366
G +L
Sbjct: 431 MGKEL 435
>gi|403214400|emb|CCK68901.1| hypothetical protein KNAG_0B04660 [Kazachstania naganishii CBS
8797]
Length = 494
Score = 281 bits (718), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 155/365 (42%), Positives = 216/365 (59%), Gaps = 7/365 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
LNL LL AC+ L YSKPTPIQ+ IP AL G+DI G A TGSGKTAAFA+P L L +
Sbjct: 79 LNLVPELLEACKNLNYSKPTPIQSRSIPPALKGKDIIGLAQTGSGKTAAFAIPILNSLWH 138
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+ A IL+PTRELA Q+ + + +R +VGG++ Q L P I
Sbjct: 139 DQQPYYAC---ILSPTRELAQQIKETFDSLGSLMGVRSVCIVGGMNMMDQARDLMRKPHI 195
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR-RQTMLF 181
++ TPGR++DHL N+ L +L L++DEADRLL++ F + ++++ P + R T LF
Sbjct: 196 IIGTPGRLMDHLENTRGFSLRNLKYLVMDEADRLLDMEFGPVLDRILKIIPTQGRTTYLF 255
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T +D+L + SLT P++ + + TL + ++ + ++ L+ L ++
Sbjct: 256 SATMTSKIDKLQRASLTNPVKCAVSTKYQTVDTLVQTLMVVPGGV---KDTYLVYLLNEF 312
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+IIF+ TK A R+ L L A LHG+L Q QR AL+LF+ L+ATD
Sbjct: 313 IGKSMIIFTRTKANAERISGLANLLQFSATALHGDLNQNQRTGALDLFKAGRRSILVATD 372
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V VINY P D SY+HRVGRTARAGR G +++ V+ D L+ I +
Sbjct: 373 VAARGLDIPSVDVVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEV 432
Query: 362 AGSKL 366
G KL
Sbjct: 433 LGKKL 437
>gi|339482299|ref|YP_004694085.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
Is79A3]
gi|338804444|gb|AEJ00686.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. Is79A3]
Length = 493
Score = 281 bits (718), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 148/372 (39%), Positives = 229/372 (61%), Gaps = 11/372 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL- 60
+L LS L+RA GY+KPTPIQ IP+ L G D+ G A TG+GKTA+F LP L RL
Sbjct: 5 QLGLSTDLMRAISDQGYTKPTPIQEQAIPIILDGNDVMGGAQTGTGKTASFTLPMLRRLE 64
Query: 61 LY-----RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
+Y P + P IR LIL PTRELAVQVH ++ ++ +R ++ GG++ Q A
Sbjct: 65 IYANTSMSPAKHP-IRALILVPTRELAVQVHESVKTYGKYLPLRSTVIYGGVNIDAQINA 123
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
+RS +I+VATPGR++DHL+ ++ L + + ILDEADR+L++GF +I ++++L P++
Sbjct: 124 VRSGIEILVATPGRLLDHLQQK-TLGLSKIEIFILDEADRMLDMGFMPDIKQIIQLLPEK 182
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQ ++FSAT +E++ +L L P+ + +T V + R ++ +L+
Sbjct: 183 RQNLMFSATFSEEIKKLASKILKNPVLIEVAKQNSVSELITHVVHPVDTTR---KQELLI 239
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
SL + +V++F+ TKQ A L + + +A +HG+ Q QR +AL F++ +
Sbjct: 240 SLIKRQKLHQVLVFTRTKQGADHLTKWLNHSGISSAAIHGDRNQLQRTQALTNFKQSLIP 299
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARGLDI + VIN+ P + YVHR+GRT RAG +G+A++ V+ ++ LL
Sbjct: 300 VLVATDVAARGLDIEELTHVINFELPNNPEDYVHRIGRTGRAGTKGFAISLVSQEEKKLL 359
Query: 356 KAIAKRAGSKLK 367
I + G K++
Sbjct: 360 IDIERVLGIKVR 371
>gi|410079330|ref|XP_003957246.1| hypothetical protein KAFR_0D04630 [Kazachstania africana CBS 2517]
gi|372463831|emb|CCF58111.1| hypothetical protein KAFR_0D04630 [Kazachstania africana CBS 2517]
Length = 487
Score = 281 bits (718), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 161/404 (39%), Positives = 228/404 (56%), Gaps = 7/404 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNL L++AC+ L Y KPTPIQ+ IP AL G+DI G A TGSGKTAAFA+P L L
Sbjct: 71 ELNLVPELIQACKNLNYEKPTPIQSKSIPPALNGKDIIGLAQTGSGKTAAFAIPILNSLW 130
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ ++P IL+PTRELA Q+ + + +R +VGG++ Q L P
Sbjct: 131 H--DQLP-YYACILSPTRELAQQIKETFDSLGSLMGVRTVCIVGGMNMMDQARDLMRKPH 187
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR-RQTML 180
I++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P R T L
Sbjct: 188 IIIATPGRLMDHLENTRGFSLRKLRYLVMDEADRLLDMEFGPVLDRILKILPTEGRTTYL 247
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L ++
Sbjct: 248 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL---KNTFLIYLLNE 304
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
IIF+ TK A R+ L L A LHG+L Q QR AL+LF+ L+AT
Sbjct: 305 FHGKTFIIFTRTKANAERIAGLANLLEFNATALHGDLNQNQRTGALDLFKAGKRSILVAT 364
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V VINY P D SY+HRVGRTARAGR G +++ V+ D L+ I +
Sbjct: 365 DVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 424
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 404
G KL V + I +++ +V L +E+ R
Sbjct: 425 VLGKKLPKESVDKDIILSLRDSVDKANGEVVMELNRRSKEKAAR 468
>gi|156548270|ref|XP_001601432.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Nasonia
vitripennis]
Length = 460
Score = 281 bits (718), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 152/376 (40%), Positives = 218/376 (57%), Gaps = 8/376 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L +ACE L + PT IQ IPL + G+D+ G A TGSGKTAAFALP L+ LL
Sbjct: 28 DLGIVDSLCQACEDLKWKAPTKIQREAIPLTIQGKDVIGLAETGSGKTAAFALPILQALL 87
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A LILTPTRELA Q+ E + ++C ++VGG+ Q L P
Sbjct: 88 ENPQRYFA---LILTPTRELAFQISEQFEALGASIGVKCVVIVGGMDMMTQSLMLAKKPH 144
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++DHL N+ +L L L++DEADR+L + F E+ +++R+ P+ R+T+LF
Sbjct: 145 IIIATPGRLVDHLENTKGFNLRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERRTLLF 204
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSK 240
SAT+T+ V +L + SL P+++ + L + V I + ++V +L L
Sbjct: 205 SATMTKKVQKLQRASLQNPVKVEVSTKYQTVEKLQQYYVFIPVKFKDVYLVHILNELSGN 264
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q +R+ AL F+ ++ LI+T
Sbjct: 265 SF----MIFCSTCNNTMRTALLLRSLGFMAVPLHGQMSQNKRIAALTKFKAKNRSILIST 320
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V VIN+ P Y+HRVGRTARAGR G +VTFVT D L + I +
Sbjct: 321 DVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGISVTFVTQYDVELYQRIEQ 380
Query: 361 RAGSKLKSRIVAEQSI 376
G +L EQ +
Sbjct: 381 LIGKQLPIYKTEEQEV 396
>gi|19114747|ref|NP_593835.1| ATP-dependent RNA helicase Rrp3 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74654514|sp|Q9P6N8.1|RRP3_SCHPO RecName: Full=ATP-dependent rRNA helicase rrp3
gi|7708606|emb|CAB90153.1| ATP-dependent RNA helicase Rrp3 (predicted) [Schizosaccharomyces
pombe]
Length = 465
Score = 281 bits (718), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 163/424 (38%), Positives = 240/424 (56%), Gaps = 9/424 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL + L ACE LG+ PTPIQ IP+ L RD+ G A TGSGKTAAFALP ++ L
Sbjct: 50 ELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELW 109
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P A+ +L PTRELA Q+ E I +R ++VGG+ Q AL P
Sbjct: 110 NNPSPFFAV---VLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPH 166
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++V TPGR++DHL N+ L +L LI+DEADRLL++ F I +++++ P R+T+LF
Sbjct: 167 VLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLF 226
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T V++L + SL +P+R++ + + ST+ + R +++ L+ L ++
Sbjct: 227 SATMTSKVEKLQRASLHQPVRVAV---SSKFSTVDTLIQRYLFFPFKHKDTYLVYLVNEL 283
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ +IIF+ T RL IL A LHG L+Q+ RL AL F+ L+ATD
Sbjct: 284 AGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATD 343
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V VINY P D +Y+HRVGRTARAGR G ++ VT D I
Sbjct: 344 VAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLEPFLRIEAT 403
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQ-EEREERILRKAEMEATKAENMIAHK 420
G K++ + ++ + S+ + E Q AI+Q +E +R K ++ + + + +
Sbjct: 404 IGKKMQEYEIDKEGVFLLSERVG--EAQREAIIQMKEIHDRRKSKGKLHTKRKRDDLDRE 461
Query: 421 EEIF 424
E+I+
Sbjct: 462 EQIY 465
>gi|329956784|ref|ZP_08297353.1| ATP-dependent RNA helicase RhlE [Bacteroides clarus YIT 12056]
gi|328523823|gb|EGF50910.1| ATP-dependent RNA helicase RhlE [Bacteroides clarus YIT 12056]
Length = 372
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 149/365 (40%), Positives = 224/365 (61%), Gaps = 4/365 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+LN++ P+L+A E GY+ PTPIQ IP ALTG+DI G A TG+GKTAAFA+P ++ L
Sbjct: 5 DLNITEPILKAIEEKGYTSPTPIQVKAIPAALTGKDILGCAQTGTGKTAAFAIPIIQHLQ 64
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+R +I+ LILTPTRELA+Q+ I+ A++T +R ++ GG++ + Q L D
Sbjct: 65 AGKERDKSIKALILTPTRELALQISECIDDYAKYTQVRHGVIFGGVNQRAQVNMLHKGVD 124
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++D L N + LD + +LDEADR+L++GF +I L+ PK +QT+ F
Sbjct: 125 ILVATPGRLLD-LMNQGYIRLDSVRHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQTLFF 183
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ + + L L +P++++ P + T+ + V + + + +L+S+ K
Sbjct: 184 SATMPDTIIALTNSLLKQPVKIAITPKSSTVDTIEQTVYFVEKKE---KSKLLISILHKA 240
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
V++FS TK A R+ + A + + +HGN +Q R ALE F+ + +IATD
Sbjct: 241 EGQSVLVFSRTKHNADRIVRVLSKAGIGSQAIHGNKSQNARQSALENFKTGKIRVMIATD 300
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARG+DI + VINY P +YVHR+GRT RAG G A+TF + +R L+ I K
Sbjct: 301 IAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNSGTALTFCSQEERKLVSDIQKL 360
Query: 362 AGSKL 366
G KL
Sbjct: 361 TGKKL 365
>gi|312370859|gb|EFR19169.1| hypothetical protein AND_22947 [Anopheles darlingi]
Length = 490
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 160/400 (40%), Positives = 227/400 (56%), Gaps = 9/400 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L L +AC AL + P+ IQ IPLAL G+DI G A TGSGKTAAFALP L+ LL
Sbjct: 53 LGLVDTLCQACRALKWKVPSKIQREAIPLALNGKDIIGLAETGSGKTAAFALPILQALLD 112
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P+R A+ +LTPTRELA Q+ E + ++CC+VVGG+ Q L P I
Sbjct: 113 NPQRYFAV---VLTPTRELAYQISEQFEALGTMIGVKCCVVVGGMDLVAQALQLARKPHI 169
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR++DHL N+ L L L++DEADR+L + F E+++++R+ P+ R+T LFS
Sbjct: 170 IIATPGRLVDHLENTKGFGLKALKYLVMDEADRILNMDFEVEVNKILRVIPRERRTFLFS 229
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSKT 241
AT+T+ V +L + SL P+++ + L + + I + ++V +L L +
Sbjct: 230 ATMTKKVKKLERASLRDPVKVEVSSKYQTVDKLLQYYIFIPAKYKDVYLVHILNELAGNS 289
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F +IF T R ++ L A LHG +TQ +RL AL F+ Q LI+TD
Sbjct: 290 F----MIFCSTCNNTVRTALMLRALGLAAVPLHGQMTQNKRLAALNKFKSQTRQILISTD 345
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V V+N P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 346 VASRGLDIPHVDVVLNLDIPMHSKDYIHRVGRTARAGRAGQAITFVTQYDVELYQRIEHL 405
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 401
KL E + + + + + + A + Q++ EER
Sbjct: 406 LSKKLPEYKCEEDEVMALQERVAEAQ-RTARMEQKDIEER 444
>gi|50305787|ref|XP_452854.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74660562|sp|Q6CT85.1|RRP3_KLULA RecName: Full=ATP-dependent rRNA helicase RRP3
gi|49641987|emb|CAH01705.1| KLLA0C14608p [Kluyveromyces lactis]
Length = 487
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 159/401 (39%), Positives = 226/401 (56%), Gaps = 7/401 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL+L L+ AC+ L Y+KPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L +L
Sbjct: 71 ELDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW 130
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + A IL PTRELA Q+ + + +R +VGG+S Q L P
Sbjct: 131 HDQQPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPH 187
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR-RQTML 180
I++ATPGR++DHL N+ +L L L++DEADRLL++ F + ++ + P + R T L
Sbjct: 188 IIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYL 247
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L ++
Sbjct: 248 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL---KNTFLIYLLNE 304
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
I+F+ TK A R+ L L A LHG+L Q QR AL+LF+ L+AT
Sbjct: 305 FIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVAT 364
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V VINY P D SY+HRVGRTARAGR G +++ V+ D L+ I
Sbjct: 365 DVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIED 424
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 401
G KL V + +I +++ +V L +E+
Sbjct: 425 VLGKKLPKENVDKDAILALRDSVDKANGEVVMELNRRNKEK 465
>gi|163755613|ref|ZP_02162732.1| DEAD/DEAH box helicase-like protein [Kordia algicida OT-1]
gi|161324526|gb|EDP95856.1| DEAD/DEAH box helicase-like protein [Kordia algicida OT-1]
Length = 438
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 154/367 (41%), Positives = 228/367 (62%), Gaps = 5/367 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS LLRA GY+ P+PIQA IPL L +D+ SA TG+GKTA F LP L+ L
Sbjct: 6 LGLSDALLRAISKKGYTTPSPIQAKAIPLVLERKDVLASAQTGTGKTAGFTLPMLQLLSQ 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P R IR LILTPTRELA QV++ +++ + F DIR ++ GG++ + Q LR+ D
Sbjct: 66 QPPLRKRPIRALILTPTRELAAQVYANVKEYSTFLDIRSTVIFGGVNARPQIATLRNGVD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++D L + ++ L + +L+LDEADR+L++GF +I ++ L PKRRQ +LF
Sbjct: 126 ILVATPGRLLD-LHSQKALSLAKVEMLVLDEADRMLDMGFLRDIKRVIELVPKRRQNLLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++D+ +L + L P+ + A P + ++V ++ + R+ +L+ L S+
Sbjct: 185 SATFSKDIKKLAQSILHHPVSVEATPENTTAEKVNQKVYKVDKPRKTE---LLIKLISEG 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
S+V++F+ TK A+RL + AA +HGN TQ R +AL+ F+K + L+ATD
Sbjct: 242 NWSQVLVFTRTKHGANRLTKKLIAKHISAAAIHGNKTQNARTKALDGFKKGTIRILVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARGLDI + VIN+ P YVHR+GRT RAG G A++ V+ + ++ I K
Sbjct: 302 IAARGLDIPLLPHVINFELPNVPEDYVHRIGRTGRAGASGEAISLVSAEEYEYVRGIEKL 361
Query: 362 AGSKLKS 368
KL S
Sbjct: 362 LDEKLHS 368
>gi|426371741|ref|XP_004052800.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Gorilla gorilla gorilla]
Length = 455
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 216/366 (59%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 28 DLGVTDVLCEACDQLGWTKPTKIQVEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 87
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL P
Sbjct: 88 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 265 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 320
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 321 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 380
Query: 361 RAGSKL 366
G KL
Sbjct: 381 LIGKKL 386
>gi|402218296|gb|EJT98373.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 476
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 159/366 (43%), Positives = 215/366 (58%), Gaps = 6/366 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L PL+ AC+ L + +PTPIQAA IP AL G+DI G A TGSGKTAAFALP L++L +
Sbjct: 44 LGLIEPLVDACKQLNFKRPTPIQAAAIPPALEGKDIIGLAETGSGKTAAFALPILQKLWH 103
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
PK ++L PTRELA Q+ E + +RC +++GG+ Q AL P I
Sbjct: 104 DPK---PFFCVVLAPTRELAYQISQQFEALGSTIGVRCAVLIGGVKMVPQAVALSKRPHI 160
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
VVATPGR+ DHL N+ L L L++DEADRLL+L F I L++ P++R TMLFS
Sbjct: 161 VVATPGRLQDHLENTKGFSLRGLKYLVMDEADRLLDLDFGPIIDTLLKAIPRQRNTMLFS 220
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T V +L + SL P+++ + STL + V + Q LL+ S
Sbjct: 221 ATMTTKVAKLQRTSLRNPVKVEVSSKYQTVSTLLQTYVLTPAAVKEPQLVHLLTTVSGLS 280
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
T I+F T A +L + A LHG+++Q +RL A+ F+ + L+ATDV
Sbjct: 281 T---IVFVRTIHDATKLTLALRNLGFPAIPLHGDISQDKRLGAISRFKAEPGAILVATDV 337
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLD+ V VINY P + Y+HRVGRTARAGR G A++ VT D LL+ I
Sbjct: 338 ASRGLDMPKVDAVINYDLPTNSKDYIHRVGRTARAGRAGKAISIVTQYDVELLQRIEHVI 397
Query: 363 GSKLKS 368
G KL++
Sbjct: 398 GKKLEA 403
>gi|302690998|ref|XP_003035178.1| hypothetical protein SCHCODRAFT_14350 [Schizophyllum commune H4-8]
gi|300108874|gb|EFJ00276.1| hypothetical protein SCHCODRAFT_14350 [Schizophyllum commune H4-8]
Length = 449
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 157/375 (41%), Positives = 221/375 (58%), Gaps = 6/375 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L PLL A + + + PT IQA +P AL GRDI G A TGSGKTAAFALP L++L
Sbjct: 19 LGLIDPLLEALDKMSFKAPTEIQAQALPHALEGRDIIGVASTGSGKTAAFALPILQKLWD 78
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
PK + A +L PTRELA Q+ E + +RC ++VGG Q+ AL P I
Sbjct: 79 DPKGLFAC---VLAPTRELAYQISQQFEALGSAMGVRCAVIVGGTDIMAQKVALAKRPHI 135
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
VVATPGR+ DHL + +L + L+LDEADRLL++ F I +++++ PK R T LFS
Sbjct: 136 VVATPGRLDDHLEKTKGFNLRGIKFLVLDEADRLLDMDFGPVIDKILKVIPKERTTYLFS 195
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T V +L + SL+ P+R+ + + +L + + + ++E ++ +L+ L +
Sbjct: 196 ATMTTKVAKLQRASLSNPVRVEVNTKYQTVDSLLQYYL-LMPLKE--KDTLLVYLANTLA 252
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+ +IIF+ T A RL I+ A LHG L+Q+QRL AL F+ L+ATDV
Sbjct: 253 QNSIIIFTRTVNDAARLSIILRTLGFPAVPLHGQLSQSQRLGALSKFKSGGRKVLVATDV 312
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI V VIN+ P Y+HRVGRTARAGR G ++TFVT D + I K
Sbjct: 313 ASRGLDIPSVDIVINFDIPTHSKDYIHRVGRTARAGRAGKSITFVTQYDVEFIMRIEKVI 372
Query: 363 GSKLKSRIVAEQSIT 377
G K++ E+ ++
Sbjct: 373 GKKMELWPTDEEEVS 387
>gi|374328740|ref|YP_005078924.1| DEAD/DEAH box helicase [Pseudovibrio sp. FO-BEG1]
gi|359341528|gb|AEV34902.1| DEAD/DEAH box helicase domain protein [Pseudovibrio sp. FO-BEG1]
Length = 453
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 154/371 (41%), Positives = 234/371 (63%), Gaps = 14/371 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L +++P A ++ GYS+PTPIQ IP L G+D+ G A TG+GKTAAFA+P L+RLL
Sbjct: 6 KLGVAKPFQIALKSKGYSEPTPIQENAIPYILDGKDLLGLAQTGTGKTAAFAVPLLQRLL 65
Query: 62 ---YR--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 116
YR PK ++R LILTPTRELA Q+ I+ A T + VVGG+ Q AL
Sbjct: 66 ESRYRAAPK---SVRSLILTPTRELADQITKNIKAYAGRTKMYTSCVVGGVPFPPQFRAL 122
Query: 117 RSMPDIVVATPGRMID-HLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
+ D++VATPGR++D H +N +S D+L + +LDEAD++L+LGF AE+ E+ L PK+
Sbjct: 123 QRGLDVLVATPGRLLDLHRKNGVS--FDELEIFVLDEADQMLDLGFIAELEEIAYLLPKK 180
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQT+ FSAT+ ++ +L + LT P+ ++ P A T+T+++ + + + +L
Sbjct: 181 RQTLFFSATMPREIRDLSERFLTNPVEVTTAPPATTVETVTQQIAHLEKDAKF---PLLK 237
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
L K + ++F+ TK+ + RL + A +HG+++QA+R + L+ F++ +
Sbjct: 238 ELLEKDECERALVFTLTKKGSARLAARLNADGVPAEAIHGDMSQAERQKTLDKFKRGKLK 297
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARG+D+ + VIN+ P +YVHR+GRTARAG+ G A+TF DR +L
Sbjct: 298 TLVATDVAARGIDVSDISHVINFDMPNATENYVHRIGRTARAGKSGTAITFCLPEDRGML 357
Query: 356 KAIAKRAGSKL 366
+AI K G K+
Sbjct: 358 RAIQKLIGKKI 368
>gi|39644716|gb|AAH09379.2| DDX47 protein, partial [Homo sapiens]
Length = 450
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 216/366 (59%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 23 DLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 82
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL P
Sbjct: 83 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 139
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 140 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 199
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 200 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 259
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 260 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 315
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 316 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 375
Query: 361 RAGSKL 366
G KL
Sbjct: 376 LIGKKL 381
>gi|345867959|ref|ZP_08819956.1| ATP-dependent RNA helicase rhlE [Bizionia argentinensis JUB59]
gi|344047610|gb|EGV43237.1| ATP-dependent RNA helicase rhlE [Bizionia argentinensis JUB59]
Length = 427
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 151/371 (40%), Positives = 228/371 (61%), Gaps = 5/371 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL- 60
+L LS LL+A GY KP+PIQ IP L GRD+ SA TG+GKTA F LP L+ L
Sbjct: 5 QLGLSDALLKAVSKQGYEKPSPIQQKAIPPVLEGRDVLASAQTGTGKTAGFTLPLLQILS 64
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
R IR LILTPTRELA QVH + + ++FTD+R ++ GG++ K Q AL
Sbjct: 65 QTETSRQRPIRALILTPTRELAAQVHENVRQYSEFTDLRSLVIFGGVNQKPQVAALNRGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D++VATPGR++D L+N ++ L + +L+LDEADR+L++GF +I ++ L P +RQ +L
Sbjct: 125 DVLVATPGRLLD-LQNQGAICLRKIEILVLDEADRMLDMGFLRDIERIMALMPAKRQNLL 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++D+ L L KP+ + A P +T++V R+ + ++ +++ L S+
Sbjct: 184 FSATFSKDIKRLASGILNKPVLVEATPENSTVDAITQKVYRVAKGKKT---GLIIKLISE 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
++V++F+ TK A++L + + AA +HGN +Q R +AL F+ + L+AT
Sbjct: 241 GNWNQVLVFARTKHGANKLCKSMISSGITAAAIHGNKSQGARTKALAGFKSGQISVLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARGLDI + VIN+ P YVHR+GRT RAG G A++ V+ ++ + L+ I K
Sbjct: 301 DIAARGLDIPLLPHVINFELPNISEDYVHRIGRTGRAGASGEAISLVSADETTFLRDIEK 360
Query: 361 RAGSKLKSRIV 371
G K+ I+
Sbjct: 361 LVGEKIPVTIL 371
>gi|355564029|gb|EHH20529.1| Putative ATP-dependent RNA helicase DDX47 [Macaca mulatta]
gi|355785916|gb|EHH66099.1| Putative ATP-dependent RNA helicase DDX47 [Macaca fascicularis]
gi|380786753|gb|AFE65252.1| putative ATP-dependent RNA helicase DDX47 isoform 1 [Macaca
mulatta]
gi|383418889|gb|AFH32658.1| putative ATP-dependent RNA helicase DDX47 isoform 1 [Macaca
mulatta]
Length = 455
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 216/366 (59%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 28 DLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 87
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL P
Sbjct: 88 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 265 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 320
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 321 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 380
Query: 361 RAGSKL 366
G KL
Sbjct: 381 LIGKKL 386
>gi|20149629|ref|NP_057439.2| probable ATP-dependent RNA helicase DDX47 isoform 1 [Homo sapiens]
gi|52782792|sp|Q9H0S4.1|DDX47_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
Full=DEAD box protein 47
gi|12052856|emb|CAB66601.1| hypothetical protein [Homo sapiens]
gi|45786091|gb|AAH68009.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Homo sapiens]
gi|117645464|emb|CAL38198.1| hypothetical protein [synthetic construct]
gi|119616683|gb|EAW96277.1| hCG2044052 [Homo sapiens]
gi|119616687|gb|EAW96281.1| hCG27698, isoform CRA_a [Homo sapiens]
gi|193785403|dbj|BAG54556.1| unnamed protein product [Homo sapiens]
Length = 455
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 216/366 (59%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 28 DLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 87
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL P
Sbjct: 88 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 265 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 320
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 321 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 380
Query: 361 RAGSKL 366
G KL
Sbjct: 381 LIGKKL 386
>gi|402885238|ref|XP_003906071.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Papio anubis]
Length = 455
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 216/366 (59%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 28 DLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 87
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL P
Sbjct: 88 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 265 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 320
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 321 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 380
Query: 361 RAGSKL 366
G KL
Sbjct: 381 LIGKKL 386
>gi|397474910|ref|XP_003808899.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Pan paniscus]
Length = 455
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 216/366 (59%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 28 DLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 87
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL P
Sbjct: 88 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 265 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 320
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 321 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 380
Query: 361 RAGSKL 366
G KL
Sbjct: 381 LIGKKL 386
>gi|297691246|ref|XP_002823001.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Pongo abelii]
Length = 455
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 216/366 (59%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 28 DLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 87
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL P
Sbjct: 88 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 265 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 320
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 321 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 380
Query: 361 RAGSKL 366
G KL
Sbjct: 381 LIGKKL 386
>gi|350537559|ref|NP_001233477.1| probable ATP-dependent RNA helicase DDX47 [Pan troglodytes]
gi|343958142|dbj|BAK62926.1| apolipoprotein-L domain-containing protein 1 [Pan troglodytes]
gi|410264252|gb|JAA20092.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Pan troglodytes]
gi|410305384|gb|JAA31292.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Pan troglodytes]
gi|410329313|gb|JAA33603.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Pan troglodytes]
Length = 455
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 216/366 (59%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 28 DLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 87
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL P
Sbjct: 88 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 265 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 320
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 321 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 380
Query: 361 RAGSKL 366
G KL
Sbjct: 381 LIGKKL 386
>gi|404401914|ref|ZP_10993498.1| DEAD/DEAH box helicase [Pseudomonas fuscovaginae UPB0736]
Length = 448
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 153/373 (41%), Positives = 225/373 (60%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 QFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +PD
Sbjct: 64 GPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGRMI+ L N+ ++DL D+ VL+LDEADR+L++GF+ ++ LV CP R+QTMLF
Sbjct: 124 ILIGTPGRMIEQL-NAGNLDLKDVEVLVLDEADRMLDMGFAEDVQRLVEECPNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E+I L P L + ++ T ++++ + ++E ++ L +
Sbjct: 183 SATTGGSGLREMIAKVLNNPEHLQLNAVSQMNETTRQQIITAD--HDQHKEQIINWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+AT
Sbjct: 241 ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGAVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I +
Sbjct: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
Query: 361 RAGSKLKSRIVAE 373
+ + R++ E
Sbjct: 361 YLKQRFERRVIKE 373
>gi|380492419|emb|CCF34618.1| ATP-dependent rRNA helicase RRP3 [Colletotrichum higginsianum]
Length = 481
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 151/386 (39%), Positives = 220/386 (56%), Gaps = 5/386 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L AC LGY+KPTPIQA IP AL RDI G A TGSGKTAAFALP ++ LL
Sbjct: 56 DLGVVDSLCDACANLGYTKPTPIQAQSIPHALANRDIIGLAETGSGKTAAFALPVIQALL 115
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ A L+L PTRELA Q+ E + +R ++VGGL Q AL P
Sbjct: 116 EKPQ---AFFGLVLAPTRELAAQIGQQFEALGSLISLRTAVIVGGLDMVAQAIALGKKPH 172
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR++DHL + L L L++DEADRLL++ F I ++++ P+ R+T LF
Sbjct: 173 VIIATPGRLVDHLEKTKGFSLRSLKYLVMDEADRLLDMDFGPSIDKILKFVPRERRTFLF 232
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++ ++ L + SL P+R+S S+ + T++ + + ++ L+ L ++
Sbjct: 233 SATMSSKIESLQRASLRDPVRVSI--SSNKYQTVSTLLQYYLFIPHTQKDVHLIYLLNEH 290
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
K++IF+ T RL IL A LHG L Q RL AL FR L+ATD
Sbjct: 291 AGKKIMIFTRTVAETQRLAILLRSLGFGAIPLHGQLNQTARLGALNKFRTGTRSILVATD 350
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLD+ V V+N+ P+D +++HR+GRTARAG+ G A++ VT D + I
Sbjct: 351 VAARGLDVPAVDVVVNHDLPQDSKTFIHRIGRTARAGKSGIALSLVTQYDLEIFLRIEAA 410
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQME 387
G KL + + + +E+ +
Sbjct: 411 LGKKLDEYPTQKDEVMVFQNRVEEAQ 436
>gi|403164869|ref|XP_003324940.2| hypothetical protein PGTG_06477 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375165434|gb|EFP80521.2| hypothetical protein PGTG_06477 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 518
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 156/366 (42%), Positives = 213/366 (58%), Gaps = 6/366 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L L AC L Y +PTPIQA IP AL RDI G A TGSGKTAAFALP L+ L
Sbjct: 76 ELGLIPELCEACRTLNYKRPTPIQAESIPYALEDRDIIGLAQTGSGKTAAFALPVLQSLW 135
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
PK +L PTRELA Q+ + + ++ ++VGG+ Q AL P
Sbjct: 136 NDPK---PFFCCVLAPTRELAYQISQQFDALGSTIGVKTAVIVGGIDMMSQAIALSKRPH 192
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR+ DHL N+ L +L LI+DEADRLL++ F I +++++ P+ R+T LF
Sbjct: 193 IIVATPGRLHDHLENTKGFSLRNLKYLIMDEADRLLDMDFGPVIDKILKVIPRERRTYLF 252
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T V +L + SL P+++ + + T+ V N++A L+ L ++
Sbjct: 253 SATMTTKVAKLQRASLVSPVKVQM---STKYDTVDGLVQLYMFFPFKNKDAYLVYLVNEL 309
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+IIF+ T A+RL I+ L + LHG L+Q+ RL +L F+ + L+ATD
Sbjct: 310 SGKSMIIFTRTVYDANRLSIILRLLGFPSIPLHGQLSQSTRLSSLNQFKSGNRSILVATD 369
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V VIN+ P + Y+HRVGRTARAGR G AVT VT D LL+ I
Sbjct: 370 VASRGLDIPTVDCVINFDLPTNSKDYIHRVGRTARAGRSGKAVTLVTQYDVELLQRIEGV 429
Query: 362 AGSKLK 367
G K++
Sbjct: 430 IGKKME 435
>gi|355683299|gb|AER97081.1| DEAD box polypeptide 47 [Mustela putorius furo]
Length = 454
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 216/366 (59%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 27 DLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 86
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL P
Sbjct: 87 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 143
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 144 VIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 203
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 204 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGN 263
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F IIF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 264 SF----IIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 319
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 320 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 379
Query: 361 RAGSKL 366
G KL
Sbjct: 380 LIGKKL 385
>gi|85816749|gb|EAQ37935.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
Length = 425
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 145/370 (39%), Positives = 224/370 (60%), Gaps = 5/370 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS LL+A GY+ P+PIQ IP L G+D+ SA TG+GKTA F LP L L+
Sbjct: 6 LGLSDALLKAVSEKGYTTPSPIQQKAIPKVLEGKDVLASAQTGTGKTAGFTLPMLHNLIA 65
Query: 63 RPKRIP-AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P++ +R L+LTPTRELA Q++ + + +++ DI+ ++ GG++ Q +R D
Sbjct: 66 NPRQGRRKVRALVLTPTRELAAQIYDNVREYSKYVDIKSTVIFGGVNQNPQVRTIRQGVD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++D L N + L D+ L+LDEADR+L++GF +I +++RL P +RQ +LF
Sbjct: 126 ILVATPGRLLD-LENQGLLSLSDIEFLVLDEADRMLDMGFIHDIKKVLRLVPAKRQNLLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT +D+ +L LT P+ + A P + ++ R+ + R+ +L+ ++
Sbjct: 185 SATFNKDIKKLASSILTNPVLVEATPENTTAEKVDQKTYRVDKSRKTE---MLIKFINEG 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++F+ TK A+RL A + +A +HGN TQ R++AL F+ + L+ATD
Sbjct: 242 NWDQVLVFTRTKHGANRLSQKLDKAGITSAAIHGNKTQNARVKALAGFKSGKIRVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARGLDI + VINY P YVHR+GRT RAG G A++ V ++ + ++ I K
Sbjct: 302 IAARGLDIPLLPYVINYELPNVPEDYVHRIGRTGRAGASGQAISLVGVDEVAYVRGIEKL 361
Query: 362 AGSKLKSRIV 371
G KL S ++
Sbjct: 362 LGEKLHSEVL 371
>gi|62897439|dbj|BAD96660.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 variant [Homo
sapiens]
Length = 448
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 216/366 (59%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 21 DLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 80
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL P
Sbjct: 81 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 137
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 138 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVNPRDRKTFLF 197
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 198 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 257
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 258 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 313
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 314 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 373
Query: 361 RAGSKL 366
G KL
Sbjct: 374 LIGKKL 379
>gi|296210930|ref|XP_002752172.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Callithrix jacchus]
Length = 455
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 216/366 (59%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 28 DLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 87
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL P
Sbjct: 88 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 265 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 320
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 321 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 380
Query: 361 RAGSKL 366
G KL
Sbjct: 381 LIGKKL 386
>gi|334366430|ref|ZP_08515362.1| putative ATP-dependent RNA helicase RhlE [Alistipes sp. HGB5]
gi|313157396|gb|EFR56819.1| putative ATP-dependent RNA helicase RhlE [Alistipes sp. HGB5]
Length = 473
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 153/365 (41%), Positives = 221/365 (60%), Gaps = 8/365 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNL P++ A GY PTPIQ IP AL GRD+ G A TG+GKTAAF LP L+ L
Sbjct: 5 ELNLIEPIMHAVAEKGYVTPTPIQEQAIPPALEGRDLMGCAQTGTGKTAAFTLPILQLLS 64
Query: 62 YRPK---RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
RP+ R P I+ L+LTPTRELA+Q+ A++TD+R C++ GG++ + Q AL+
Sbjct: 65 ARPRTKGRRP-IKALVLTPTRELAIQIDECCRDYARYTDLRHCVIFGGVNQRPQVDALQR 123
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
D++VATPGR++D L V L D+ +LDEADR+L++GF +I ++ L PK RQT
Sbjct: 124 GVDLLVATPGRLLD-LIGQGYVSLSDIRFFVLDEADRMLDMGFIHDIKRILPLLPKERQT 182
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
+ FSAT+ D+ L L P+ ++ P A T+++ V+ + ++ +L+SL
Sbjct: 183 LFFSATMPSDIVTLANSMLHDPVHVTVTPPASVVETISQSVMFAEK---AEKKDLLISLL 239
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+ V++FS TK A R+ + A ++ +HG+ +Q R A+ FR LI
Sbjct: 240 RERSEGSVLVFSRTKHGADRIARILTKAGIEGRAIHGDKSQGARERAMNDFRAGRCRVLI 299
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+AARG+DI + VINY P +YVHR+GRT RAG +G A+ F ++++R LLK I
Sbjct: 300 ATDIAARGIDISELPLVINYDLPEVAETYVHRIGRTGRAGHDGTAIAFCSEDERPLLKDI 359
Query: 359 AKRAG 363
K G
Sbjct: 360 QKLTG 364
>gi|71022263|ref|XP_761361.1| hypothetical protein UM05214.1 [Ustilago maydis 521]
gi|74699927|sp|Q4P3U9.1|RRP3_USTMA RecName: Full=ATP-dependent rRNA helicase RRP3
gi|46097669|gb|EAK82902.1| hypothetical protein UM05214.1 [Ustilago maydis 521]
Length = 551
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 153/365 (41%), Positives = 209/365 (57%), Gaps = 6/365 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + ++ AC +G+ PTPIQ IP AL RD+ G A TGSGKTAAF +P L+ L
Sbjct: 108 DLGVIPQIVEACTNMGFKHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPILQALW 167
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
PK A +L PTRELA Q+ +E + +R +VGG+ Q AL P
Sbjct: 168 DNPKPFFAC---VLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSKRPH 224
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR+ DHL N+ L L L++DEADRLL++ F I +L++ P+ R+TMLF
Sbjct: 225 VIVATPGRLQDHLENTKGFSLRGLQYLVMDEADRLLDMDFGPIIDKLLQSIPRERRTMLF 284
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T V +L + SL P+R+ D STL + + M +++ L+ L ++
Sbjct: 285 SATMTTKVAKLQRASLKNPVRVEVDTKYTTVSTLKQHYM---FMPFAHKDTYLVHLANEQ 341
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+I+F+ T + RL IL L A LHG L+Q RL AL F+ L+ATD
Sbjct: 342 AGHSIIVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKTGGRSILVATD 401
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V V+NY P + Y+HRVGRTARAGR G +VT VT D LL+ I
Sbjct: 402 VASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVELLQRIEAV 461
Query: 362 AGSKL 366
G K+
Sbjct: 462 IGLKM 466
>gi|417401266|gb|JAA47524.1| Putative atp-dependent rna helicase [Desmodus rotundus]
Length = 455
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 151/366 (41%), Positives = 215/366 (58%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 28 DLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 87
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL P
Sbjct: 88 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 145 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG + Q++RL +L F+ + L+AT
Sbjct: 265 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMNQSKRLGSLNKFKAKARSILLAT 320
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 321 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 380
Query: 361 RAGSKL 366
G KL
Sbjct: 381 LIGKKL 386
>gi|255935375|ref|XP_002558714.1| Pc13g02750 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583334|emb|CAP91344.1| Pc13g02750 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 493
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 152/365 (41%), Positives = 215/365 (58%), Gaps = 5/365 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L L AC+ +GY PTPIQ+ IPLAL GRDI G A TGSGKTA+F LP L+ L+
Sbjct: 75 ELGLIDSLCEACDKMGYKAPTPIQSESIPLALQGRDIIGLAETGSGKTASFVLPILQALM 134
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + L+L PTRELA Q+ E + ++R +VGG+ Q AL P
Sbjct: 135 EKPQ---SFFGLVLAPTRELAYQISLACESLGATINVRSTTLVGGMDMVPQSIALGKKPH 191
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L L L++DEADRLL++ F + +++++ P+ R+T LF
Sbjct: 192 IIVATPGRLLDHLENTKGFSLRSLKFLVMDEADRLLDMDFGPILDKILKVLPRERRTFLF 251
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SATL+ V+ L + SL+ P R+S S ++ +R + +++ L+ L +
Sbjct: 252 SATLSSKVESLQRASLSNPARVSISSSKYATVETLQQTYLLRPYK--HKDIYLVYLLHEF 309
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
VIIF T R+ L A LHG ++Q+ RL AL FR + + L+ATD
Sbjct: 310 IGQSVIIFMRTVHETQRVAFLLRGLGFGAIPLHGQMSQSARLGALGKFRSKSREILVATD 369
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V V+N+ P D +Y+HRVGRTARAG+ G A++FVT D + + I
Sbjct: 370 VAARGLDIPSVDCVLNFDLPTDSKTYIHRVGRTARAGKSGTAISFVTQYDVEIWQRIEAA 429
Query: 362 AGSKL 366
G +L
Sbjct: 430 MGKEL 434
>gi|375357970|ref|YP_005110742.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 638R]
gi|301162651|emb|CBW22198.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 638R]
Length = 427
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 146/365 (40%), Positives = 219/365 (60%), Gaps = 5/365 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
LNL P+L+A GY+ PTPIQ IP+ L G+D+ G A TG+GKTAAF++P L++L
Sbjct: 5 NLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPILQKL- 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+ I+ L+LTPTRELA+Q+ E ++T ++ ++ GG+ K Q ALRS
Sbjct: 64 YKTDHRKGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALRSGIQ 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++D + + L L +LDEADR+L++GF +I +++L P RRQT+ F
Sbjct: 124 ILVATPGRLLDLISQGF-ISLSSLDFFVLDEADRMLDMGFIHDIKRILKLLPARRQTLFF 182
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ +++ L LTKP ++ P++ ++++V + + ++ +L+ L T
Sbjct: 183 SATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKKE---KKDLLIHLLKDT 239
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
V+IF+ TK A +L + A + A +HGN TQ R AL F+ + LIATD
Sbjct: 240 SIESVLIFTRTKYGADKLARVLTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALIATD 299
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARG+D+ + VINY P +YVHR+GRT RAG EG A++F + LK I K
Sbjct: 300 IAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAISFCESEELPYLKDIQKL 359
Query: 362 AGSKL 366
G K+
Sbjct: 360 IGKKI 364
>gi|390945687|ref|YP_006409447.1| DNA/RNA helicase [Alistipes finegoldii DSM 17242]
gi|390422256|gb|AFL76762.1| DNA/RNA helicase, superfamily II [Alistipes finegoldii DSM 17242]
Length = 473
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 153/365 (41%), Positives = 221/365 (60%), Gaps = 8/365 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNL P++ A GY PTPIQ IP AL GRD+ G A TG+GKTAAF LP L+ L
Sbjct: 5 ELNLIEPIMHAVAEKGYVTPTPIQEQAIPPALEGRDLMGCAQTGTGKTAAFTLPILQLLS 64
Query: 62 YRPK---RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
RP+ R P I+ L+LTPTRELA+Q+ A++TD+R C++ GG++ + Q AL+
Sbjct: 65 ARPRTKGRRP-IKALVLTPTRELAIQIDECCRDYARYTDLRHCVIFGGVNQRPQVDALQR 123
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
D++VATPGR++D L V L D+ +LDEADR+L++GF +I ++ L PK RQT
Sbjct: 124 GIDLLVATPGRLLD-LIGQGYVSLSDIRFFVLDEADRMLDMGFIHDIKRILPLLPKERQT 182
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
+ FSAT+ D+ L L P+ ++ P A T+++ V+ + ++ +L+SL
Sbjct: 183 LFFSATMPSDIVTLANSMLHDPVHVTVTPPASVVETISQSVMFAEK---AEKKDLLISLL 239
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+ V++FS TK A R+ + A ++ +HG+ +Q R A+ FR LI
Sbjct: 240 RERSEGSVLVFSRTKHGADRIARILTKAGIEGRAIHGDKSQGARERAMNDFRAGRCRVLI 299
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+AARG+DI + VINY P +YVHR+GRT RAG +G A+ F ++++R LLK I
Sbjct: 300 ATDIAARGIDISELPLVINYDLPEVAETYVHRIGRTGRAGHDGTAIAFCSEDERPLLKDI 359
Query: 359 AKRAG 363
K G
Sbjct: 360 QKLTG 364
>gi|444318027|ref|XP_004179671.1| hypothetical protein TBLA_0C03500 [Tetrapisispora blattae CBS 6284]
gi|387512712|emb|CCH60152.1| hypothetical protein TBLA_0C03500 [Tetrapisispora blattae CBS 6284]
Length = 506
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 163/404 (40%), Positives = 225/404 (55%), Gaps = 7/404 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L L+ AC+ L Y KPTPIQ+ IP AL G+DI G A TGSGKTAAFA+P L +L
Sbjct: 90 ELKLVPELVEACKNLNYEKPTPIQSRAIPPALEGKDIIGLAQTGSGKTAAFAIPILNKLW 149
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ A I+ PTRELA Q+ + + +R +VGG++ Q L P
Sbjct: 150 EDQQPYYAC---IMAPTRELAQQIKEQFDSLGALMGVRSVCIVGGMNMMDQARDLMRKPH 206
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR-RQTML 180
I++ATPGR++DHL N+ L L L++DEADRLL+L F + ++++ P + R T L
Sbjct: 207 IIIATPGRLMDHLENTRGFSLRKLKFLVMDEADRLLDLEFGPVLDRILKILPTQGRTTYL 266
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L ++
Sbjct: 267 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLIQTLMVVPGGL---KNTYLIYLINE 323
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+IIF+ TK A RL +L A LHG+L Q QR AL+LF+ LIAT
Sbjct: 324 FVGKSIIIFTRTKANAERLSLLSNTLEFDAIALHGDLNQNQRTGALDLFKAGKKSILIAT 383
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V VINY P D SY+HRVGRTARAGR G +++ V+ D L+ I
Sbjct: 384 DVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIED 443
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 404
G KL V I +E+ +V L +E+ LR
Sbjct: 444 VLGKKLPKENVDRDIILSLRDSVEKTNGEVIMELNRRNKEKQLR 487
>gi|332232745|ref|XP_003265564.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Nomascus
leucogenys]
Length = 455
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 149/366 (40%), Positives = 216/366 (59%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 28 DLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 87
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL P
Sbjct: 88 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 145 VIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 265 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 320
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 321 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEY 380
Query: 361 RAGSKL 366
G KL
Sbjct: 381 LIGKKL 386
>gi|301765212|ref|XP_002918022.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Ailuropoda melanoleuca]
Length = 455
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 216/366 (59%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 28 DLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 87
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL P
Sbjct: 88 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGN 264
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 265 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 320
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 321 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 380
Query: 361 RAGSKL 366
G KL
Sbjct: 381 LIGKKL 386
>gi|410963864|ref|XP_003988479.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Felis catus]
Length = 455
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 216/366 (59%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 28 DLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 87
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL P
Sbjct: 88 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 145 VIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + V I + ++ +L L
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYVFIPSKFKDTYLVYILNELAGN 264
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 265 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 320
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 321 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 380
Query: 361 RAGSKL 366
G KL
Sbjct: 381 LIGKKL 386
>gi|16549139|dbj|BAB70762.1| unnamed protein product [Homo sapiens]
Length = 455
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 149/366 (40%), Positives = 216/366 (59%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ +PLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 28 DLGVTDVLCEACDQLGWTKPTKIQIEAVPLALQGRDIIGLAETGSGKTGAFALPILNALL 87
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL P
Sbjct: 88 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 265 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 320
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 321 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 380
Query: 361 RAGSKL 366
G KL
Sbjct: 381 LIGKKL 386
>gi|343428869|emb|CBQ72414.1| probable DEAD box protein (putative RNA helicase) [Sporisorium
reilianum SRZ2]
Length = 568
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 153/365 (41%), Positives = 209/365 (57%), Gaps = 6/365 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + ++ AC +G+ PTPIQ IP AL RD+ G A TGSGKTAAF +P L+ L
Sbjct: 125 DLGVIPQIVEACTNMGFKHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPILQALW 184
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
PK A +L PTRELA Q+ +E + +R +VGG+ Q AL P
Sbjct: 185 DNPKPFFAC---VLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSKRPH 241
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR+ DHL N+ L L L++DEADRLL++ F I +L++ P+ R+TMLF
Sbjct: 242 VIVATPGRLQDHLENTKGFSLRGLQYLVMDEADRLLDMDFGPIIDKLLQSIPRERRTMLF 301
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T V +L + SL P+R+ D STL + + M +++ L+ L ++
Sbjct: 302 SATMTTKVAKLQRASLKNPVRVEVDTKYTTVSTLKQHYL---FMPFAHKDTYLVHLANEQ 358
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+I+F+ T + RL IL L A LHG L+Q RL AL F+ L+ATD
Sbjct: 359 AGHSIIVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKTGGRSILVATD 418
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V V+NY P + Y+HRVGRTARAGR G +VT VT D LL+ I
Sbjct: 419 VASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVELLQRIEAV 478
Query: 362 AGSKL 366
G K+
Sbjct: 479 IGLKM 483
>gi|66550432|ref|XP_395653.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Apis mellifera]
Length = 452
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 160/408 (39%), Positives = 229/408 (56%), Gaps = 22/408 (5%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L +ACE L + PT IQ IPLAL G+DI G A TGSGKTAAFALP L+ LL
Sbjct: 22 DLGIVDVLCKACEDLKWKSPTKIQYEAIPLALEGKDIIGLAETGSGKTAAFALPILQALL 81
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A LILTPTRELA Q+ E + ++C ++VGG+ Q L P
Sbjct: 82 ENPQRYFA---LILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMMSQALILAKKPH 138
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++DHL N+ L L L++DEADR+L + F E+ +++R+ P+ R+T+LF
Sbjct: 139 ILIATPGRLVDHLENTKGFSLRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERKTLLF 198
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSK 240
SAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 199 SATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGN 258
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q +R+ AL F+ ++ LI+T
Sbjct: 259 SF----MIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSILIST 314
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++TFVT D L + I
Sbjct: 315 DVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRI-- 372
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEM 408
EQ I+K + E++V + + E R + K EM
Sbjct: 373 ------------EQLISKQLPLYATQEEEVMVLEERVAEARRIVKMEM 408
>gi|149713746|ref|XP_001501494.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Equus caballus]
Length = 455
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 151/366 (41%), Positives = 216/366 (59%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 28 DLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 87
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL P
Sbjct: 88 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 145 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGN 264
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 265 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 320
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 321 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 380
Query: 361 RAGSKL 366
G KL
Sbjct: 381 LIGKKL 386
>gi|407782464|ref|ZP_11129676.1| DEAD/DEAH box helicase [Oceanibaculum indicum P24]
gi|407205829|gb|EKE75795.1| DEAD/DEAH box helicase [Oceanibaculum indicum P24]
Length = 515
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 156/363 (42%), Positives = 218/363 (60%), Gaps = 6/363 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L LS P+L+A A GY PTPIQA IP LTGRD+ G A TG+GKTAAFALP L RL
Sbjct: 6 DLGLSAPILKAVTAEGYETPTPIQAQAIPPVLTGRDLMGIAQTGTGKTAAFALPILNRLT 65
Query: 62 YRPKRI----PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 117
I + RVLIL+PTRELA Q+ +F ++ V GG+S Q AL+
Sbjct: 66 EEGNHIKTPRGSCRVLILSPTRELASQIAESFRVYGKFLNLSVATVFGGVSAGPQAKALQ 125
Query: 118 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 177
DIVVATPGR+IDHL+N + V LD + + +LDEAD++L++GF I +V+ P +RQ
Sbjct: 126 RGVDIVVATPGRLIDHLQNRV-VRLDQVEIFVLDEADQMLDMGFIQPIRRIVKTLPAKRQ 184
Query: 178 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 237
+ FSAT+ +++ L L P +++ P A ++++V+ + + A LLS
Sbjct: 185 NLFFSATMPREIETLAGELLHDPAKVAVTPVASTAERVSQQVIFVPTGLKRALLADLLSD 244
Query: 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
F + ++F+ TK A ++ A + +A +HGN +Q+QR AL FR L
Sbjct: 245 AQMGF-GRTLVFTRTKHGADKVVRYLEGAGIVSAAIHGNKSQSQRERALLAFRDGACKVL 303
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
IATD+AARG+D+ GV VINY P SYVHR+GRTARAG +G A++F +R+ L+
Sbjct: 304 IATDIAARGIDVDGVTHVINYDLPNIAESYVHRIGRTARAGADGMAISFCDREERAYLRD 363
Query: 358 IAK 360
I K
Sbjct: 364 IEK 366
>gi|384487072|gb|EIE79252.1| hypothetical protein RO3G_03957 [Rhizopus delemar RA 99-880]
Length = 462
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 152/367 (41%), Positives = 215/367 (58%), Gaps = 6/367 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L +S+ L ACE + + PT IQ IP A+ GRDI G A TGSGKTAAFA+P ++RL
Sbjct: 27 DLGVSKELCEACEKMNFKHPTEIQKESIPWAIEGRDIIGLAQTGSGKTAAFAIPIIQRLW 86
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ A +L PTRELA Q+ E + +RC ++VGG+ Q AL P
Sbjct: 87 QNPQ---AFFACVLAPTRELAYQIAETFESLGSVIGVRCAVIVGGMDMMTQSIALAKRPH 143
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+V TPGR+ DHL N+ +L L L++DEADRLL+L F +I +++++ P+ R T LF
Sbjct: 144 IIVCTPGRLQDHLENTKGFNLKHLKYLVMDEADRLLDLDFGPKIDQILKVIPRERNTFLF 203
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T V +L + SL KP+++ A + ST+ + +++ ++ L ++
Sbjct: 204 SATMTTKVAKLQRASLHKPVKVEV---ATKYSTVKTLLQYYLFFPLKHKDCYMVYLLNEL 260
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ IIF+ T ++ I+ A LHG L QA+RL AL F+ + L+ATD
Sbjct: 261 AGNSTIIFTRTCSDTQKIAIMLRNLGFGAIPLHGQLPQAKRLGALNKFKAGARNILVATD 320
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V VINY P+ Y+HRVGRTARAGR G +VTFVT D L++ I K
Sbjct: 321 VASRGLDIPLVDVVINYDVPQSSKDYIHRVGRTARAGRSGKSVTFVTQYDVELIQRIEKD 380
Query: 362 AGSKLKS 368
KL +
Sbjct: 381 LERKLDA 387
>gi|157138136|ref|XP_001664143.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|108869558|gb|EAT33783.1| AAEL013950-PA [Aedes aegypti]
Length = 495
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 151/366 (41%), Positives = 214/366 (58%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++ L L AC AL + P+ IQ IPLAL G+D+ G A TGSGKT AFALP L+ LL
Sbjct: 61 DMGLIDTLCEACRALKWKAPSKIQREAIPLALQGKDVIGLAETGSGKTGAFALPILQALL 120
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A+ ILTPTRELA Q+ E + I+CC++VGG+ Q L P
Sbjct: 121 ENPQRYFAV---ILTPTRELAYQISEQFEALGASIGIKCCVIVGGMDMVSQALHLARKPH 177
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++DHL N+ +L + L++DEADR+L L F E+ +++++ P+ R+T LF
Sbjct: 178 IIIATPGRLVDHLENTKGFNLKAVKYLVMDEADRILNLDFEVELEKILKVIPRERRTFLF 237
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 238 SATMTKKVKKLERASLKDPVKVEVSSKYQTVEKLLQYYIFIPAKYKDVYLVHILNELAGN 297
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R ++ L A LHG ++Q +RL AL F+ ++ LI+T
Sbjct: 298 SF----MIFCSTCNNTVRTALMLRALGLAAVPLHGQMSQNKRLAALNKFKGKNRQILIST 353
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G AVTFVT D L + I
Sbjct: 354 DVASRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRAGKAVTFVTQYDVELYQRIEH 413
Query: 361 RAGSKL 366
G KL
Sbjct: 414 LLGKKL 419
>gi|148237396|ref|NP_001085167.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Xenopus laevis]
gi|47938654|gb|AAH72214.1| MGC81303 protein [Xenopus laevis]
Length = 448
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 152/376 (40%), Positives = 218/376 (57%), Gaps = 8/376 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L ACE LG+ +PT IQ IP+AL GRDI G A TGSGKT AFALP L+ LL
Sbjct: 23 DLGVTDVLCEACEQLGWKQPTKIQIEAIPMALQGRDIIGLAETGSGKTGAFALPILQTLL 82
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ Q AL P
Sbjct: 83 ESPQRLYA---LVLTPTRELAFQISEQFEALGSSIGVKSAVIVGGIDMMSQSLALAKKPH 139
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR+IDHL N+ +L + L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 140 IVIATPGRLIDHLENTKGFNLRAIKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 199
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + V I + ++ +L L
Sbjct: 200 SATMTKKVHKLQRAALKDPVKCAVSSKYQTVEKLQQFYVFIPSKFKDSYLVYILNELAGN 259
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R+ +L A LHG + Q +RL AL F+ + L+AT
Sbjct: 260 SF----MIFCSTCNNTQRVALLLRNLGFTAIPLHGQMGQNKRLGALNKFKAKSRSILLAT 315
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V VIN+ P Y+HRVGRTARAGR G A+TFV+ D L + I
Sbjct: 316 DVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRIEH 375
Query: 361 RAGSKLKSRIVAEQSI 376
G KL + E+ +
Sbjct: 376 LIGKKLPAFPTQEEEV 391
>gi|392578929|gb|EIW72056.1| hypothetical protein TREMEDRAFT_41472 [Tremella mesenterica DSM
1558]
Length = 491
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 152/388 (39%), Positives = 229/388 (59%), Gaps = 6/388 (1%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 68
L ++C L + PTPIQ IP AL GRD+ G A TGSGKTAAF+LP L++L P+
Sbjct: 57 LCQSCATLAFKAPTPIQVEAIPSALQGRDVIGLAQTGSGKTAAFSLPILQKLWENPQPFF 116
Query: 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 128
A LIL PTRELA Q+ + + +R ++VGG+ Q AL P ++VATPG
Sbjct: 117 A---LILAPTRELAYQISQQVTSLGSPLGVRTAVIVGGMDMMSQSIALSKRPHVIVATPG 173
Query: 129 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 188
R++DHL N+ L ++ L++DEADRLL++ F I +++++ PK R T LFSAT+T
Sbjct: 174 RLMDHLENTKGFSLKNVKFLVMDEADRLLDMDFGPIIDKILKVIPKERNTYLFSATMTTK 233
Query: 189 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVII 248
V +L + SL KP+R+ A + ST++ + + ++ LL + ++ + +II
Sbjct: 234 VAKLQRASLNKPVRVEV---ATKYSTVSTLLQHYLLLPLKAKDTHLLYIVTELSSCSMII 290
Query: 249 FSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 308
F+ T A RL I+ A LHG ++Q+ RL +L F+ L+ATDVA+RGLD
Sbjct: 291 FTRTVVDAQRLSIMLRRLGFPAIPLHGQMSQSLRLASLNKFKSGGRSILVATDVASRGLD 350
Query: 309 IIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 368
I V V+NY P + YVHRVGRTARAGR G ++T VT D +L+ I G K+++
Sbjct: 351 IPLVDLVVNYDMPINSKDYVHRVGRTARAGRSGKSITMVTQYDVEILQRIEAHIGKKMEN 410
Query: 369 RIVAEQSITKWSKIIEQMEDQVAAILQE 396
V ++++ +S+ + + + A ++E
Sbjct: 411 FAVDKEAVAAFSETVARANREAALEMRE 438
>gi|301610482|ref|XP_002934775.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Xenopus (Silurana) tropicalis]
Length = 448
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 151/376 (40%), Positives = 218/376 (57%), Gaps = 8/376 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL ++ L CE LG+ +PT IQ IP+AL GRDI G A TGSGKT AFALP L+ LL
Sbjct: 23 ELGVTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPILQTLL 82
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ Q AL P
Sbjct: 83 ESPQRLYA---LVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQSLALAKKPH 139
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+V+ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 140 VVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 199
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + V I + ++ +L L
Sbjct: 200 SATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQFYVFIPSKFKDSYLVYILNELAGN 259
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R+ +L A LHG ++Q +RL +L F+ + L+AT
Sbjct: 260 SF----MIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKSRSILLAT 315
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V VIN+ P Y+HRVGRTARAGR G A+TFV+ D L + I
Sbjct: 316 DVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRIEH 375
Query: 361 RAGSKLKSRIVAEQSI 376
G KL + E+ +
Sbjct: 376 LIGKKLPAFPTQEEEV 391
>gi|443893885|dbj|GAC71341.1| ATP-dependent RNA helicase [Pseudozyma antarctica T-34]
Length = 562
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 151/357 (42%), Positives = 206/357 (57%), Gaps = 6/357 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + ++ AC +G+ PTPIQ IP AL RD+ G A TGSGKTAAF +P L+ L
Sbjct: 119 DLGVIPQIIEACTNMGFQHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPILQALW 178
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
PK A +L PTRELA Q+ +E + +R +VGG+ Q AL P
Sbjct: 179 DNPKPFFAC---VLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSKRPH 235
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR+ DHL N+ L L L++DEADRLL++ F I +L++ P+ R+TMLF
Sbjct: 236 VIVATPGRLQDHLENTKGFSLRGLQYLVMDEADRLLDMDFGPIIDKLLQSIPRERRTMLF 295
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T V +L + SL P+R+ D STL + + M +++ L+ L ++
Sbjct: 296 SATMTTKVAKLQRASLKNPVRVEVDTKYTTVSTLKQHYL---FMPFAHKDTYLVHLANEQ 352
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+I+F+ T + RL IL L A LHG L+Q RL AL F+ L+ATD
Sbjct: 353 AGHSIIVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKTGGRSILVATD 412
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
VA+RGLDI V V+NY P + Y+HRVGRTARAGR G +VT VT D LL+ I
Sbjct: 413 VASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVELLQRI 469
>gi|380013608|ref|XP_003690844.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Apis
florea]
Length = 452
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 160/409 (39%), Positives = 230/409 (56%), Gaps = 22/409 (5%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L +ACE L + PT IQ IPLAL G+DI G A TGSGKTAAFALP L+ LL
Sbjct: 22 DLGIVDILHKACEDLKWKSPTKIQCEAIPLALEGKDIIGLAETGSGKTAAFALPILQALL 81
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A LILTPTRELA Q+ E + ++C ++VGG+ Q L P
Sbjct: 82 ENPQRYFA---LILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMMSQALILAKKPH 138
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++DHL N+ L L L++DEADR+L + F E+ +++R+ P+ R+T+LF
Sbjct: 139 ILIATPGRLVDHLENTKGFSLRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERKTLLF 198
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSK 240
SAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 199 SATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGN 258
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q +R+ AL F+ ++ LI+T
Sbjct: 259 SF----MIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSILIST 314
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++TFVT D L + I
Sbjct: 315 DVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRI-- 372
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 409
EQ I+K + E++V + + E R + K EM+
Sbjct: 373 ------------EQLISKQLPLYPTQEEEVMVLEERVAEARRIVKMEMK 409
>gi|73997167|ref|XP_534885.2| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Canis lupus familiaris]
Length = 456
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 151/366 (41%), Positives = 216/366 (59%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 28 DLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 87
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL P
Sbjct: 88 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 145 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGN 264
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 265 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 320
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 321 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 380
Query: 361 RAGSKL 366
G KL
Sbjct: 381 LIGKKL 386
>gi|341877652|gb|EGT33587.1| hypothetical protein CAEBREN_24452 [Caenorhabditis brenneri]
Length = 491
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 158/401 (39%), Positives = 230/401 (57%), Gaps = 9/401 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL +S+PL AC LG+ KP+ IQ A +P AL G+D+ G A TGSGKT AFA+P L+ LL
Sbjct: 48 ELGVSQPLCDACHRLGWVKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLL 107
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ A L+LTPTRELA Q+ E + + ++VGG+ Q AL P
Sbjct: 108 DHPQ---AFFCLVLTPTRELAFQIGQQFEALGSGIGLIVAVIVGGVDMAAQAMALARRPH 164
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ +L L LI+DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 165 IIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRTYLF 224
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ V +L + SL P R+S K L + + + +E L+ L ++
Sbjct: 225 SATMTKKVSKLERASLRDPARVSISTRYKTVDNLKQHYIFVPNKY---KETYLVYLLNEH 281
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ I+F T ++ ++ ++A LHG ++Q +RL +L F+ + + L+ TD
Sbjct: 282 AGNSAIVFCATCATTMQVAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTD 341
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V VINY P YVHRVGRTARAGR G A+T VT D + I
Sbjct: 342 VAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGLAITVVTQYDVEAYQKIEAN 401
Query: 362 AGSKL-KSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 401
G KL + + V + + + E ME+ A I +E +E+
Sbjct: 402 LGKKLDEYKCVENEVMVLVERTQEAMEN--AKIEMKEMDEK 440
>gi|301119991|ref|XP_002907723.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262106235|gb|EEY64287.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 479
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 150/376 (39%), Positives = 217/376 (57%), Gaps = 8/376 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL + + A EA+G+S P+ IQ IP L G+DI G A TGSGKT AF +P L+ LL
Sbjct: 32 ELGVDSAICEAIEAVGWSAPSKIQQQAIPHGLAGKDIIGLAETGSGKTGAFVIPILQSLL 91
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ P+R+ A L+L PTRELA Q+ E + ++C VVGG+ Q+ AL P
Sbjct: 92 HNPQRLYA---LVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDMMQQQVALARKPH 148
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+V+ATPGR++DHL N+ L + L+LDEADR+L + F EI+++V+L P R T LF
Sbjct: 149 VVIATPGRLVDHLENTKGFSLRTMKFLVLDEADRMLSMDFEEEINQIVQLMPADRNTYLF 208
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T V +L + SL P+++ P TL + + I + ++ VL + +
Sbjct: 209 SATMTSKVRKLQRASLKDPVKVEITHKFATPETLKQHYLFIPAKFKDCYLAYVLNEVAGQ 268
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+ V+IF+ T ++ ++ +A LHG + Q RL AL F+ + + L+ T
Sbjct: 269 S----VLIFASTCNGTQKVTLMLRNLGFQAICLHGQMPQPSRLGALNKFKAKARNVLVCT 324
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V VINY P Y+HRVGRTARAGR G A++FVT D L + I
Sbjct: 325 DVASRGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAISFVTQYDVELYQRIEH 384
Query: 361 RAGSKLKSRIVAEQSI 376
G+KL + E+++
Sbjct: 385 LLGTKLDAYSCEEETV 400
>gi|390566282|ref|ZP_10246715.1| DEAD-box ATP-dependent RNA helicase cshA [Nitrolancetus hollandicus
Lb]
gi|390170465|emb|CCF86060.1| DEAD-box ATP-dependent RNA helicase cshA [Nitrolancetus hollandicus
Lb]
Length = 528
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 161/369 (43%), Positives = 221/369 (59%), Gaps = 7/369 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+LRA EA+G+ +PTPIQ IPL L GRD+ A TG+GKTAAFALP ++RL
Sbjct: 7 LGLSEPILRAIEAVGFEEPTPIQRQAIPLMLDGRDVIAQAQTGTGKTAAFALPIIQRL-- 64
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+P + + L+L PTRELAVQV + +F DIR V GG + Q ALR DI
Sbjct: 65 KPDQ-KGPQALVLAPTRELAVQVAQAFYSLGKFQDIRVLAVYGGQPIERQLRALRFPVDI 123
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+V TPGR++DHLR ++ +D+++++LDEAD +L++GF +I ++ P +RQ LFS
Sbjct: 124 IVGTPGRIMDHLRRE-TLSFEDISMVVLDEADEMLDMGFVEDIEWILDQVPAQRQIALFS 182
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+ + +L + L KP+R++ +P +R + E V + + EA L + T
Sbjct: 183 ATIPNRIVDLSRRYLQKPVRIAIEP--ERVTVPLTEQVYYQVVPRAKVEA-LTRILDLTA 239
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
S IIF TK+ L A LHG+L+Q QR + FR + LIATDV
Sbjct: 240 PSSAIIFCRTKREVDDLTQKLESLGYPAEALHGDLSQVQRDRVMGRFRSGQTELLIATDV 299
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI V VINY P D SYVHR+GRT RAGR G A+T VT + LL+AI +
Sbjct: 300 ASRGLDIEQVSHVINYDIPLDPESYVHRIGRTGRAGRPGVAITLVTPRESRLLRAIERAT 359
Query: 363 GSKLKSRIV 371
G +++ R V
Sbjct: 360 GGRIERRSV 368
>gi|388578792|gb|EIM19128.1| DEAD-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 438
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 155/367 (42%), Positives = 215/367 (58%), Gaps = 8/367 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+LNL L++ CE LGY +PT IQ IP +L RDI G A TGSGKTAAFALP ++ L
Sbjct: 8 DLNLIDDLVKNCERLGYKQPTEIQQQSIPYSLQSRDIIGLAQTGSGKTAAFALPVIQLLY 67
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P P +L PTRELA Q+ E + +R +VGG+ Q AL P
Sbjct: 68 DNPA--PYF-CCVLAPTRELAYQISEQFEALGSNIGLRTATIVGGMDMMTQSIALSKKPH 124
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR+ DHL N+ L ++ L++DEADRLL++ F I +L+++ PK R TMLF
Sbjct: 125 IIVATPGRLHDHLENTKGFSLRNIKFLVMDEADRLLDMDFGPIIDKLLKILPKERTTMLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSK 240
SAT+T V +L + SL+ P+++ + STL + + +M+ ++ L+ L ++
Sbjct: 185 SATMTTKVAKLQRASLSNPVKVEVSDKYQTVSTLLQHYLFFPFKMK----DSYLVYLANE 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+IIF+ T A R+ I+ A LHG L+Q+ RL AL F+ + L+AT
Sbjct: 241 VAGHSMIIFTRTVVDAQRISIILRNLGFPAIPLHGQLSQSSRLGALNKFKAGGRNILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+NY P + Y+HRVGRTARAGR G A+T VT D LL+ I K
Sbjct: 301 DVASRGLDIPSVDYVVNYDTPSNSKDYIHRVGRTARAGRSGKAITLVTQYDVELLQRIEK 360
Query: 361 RAGSKLK 367
K++
Sbjct: 361 AINVKME 367
>gi|333891675|ref|YP_004465550.1| ATP-dependent RNA helicase RhlE [Alteromonas sp. SN2]
gi|332991693|gb|AEF01748.1| ATP-dependent RNA helicase RhlE [Alteromonas sp. SN2]
Length = 457
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 149/358 (41%), Positives = 219/358 (61%), Gaps = 5/358 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L+ PLL+A E GY+ P+PIQ IP+ L G+DI +A TG+GKTA F+LP L RLL
Sbjct: 5 ELGLAAPLLQAIEKQGYTTPSPIQQQAIPIILEGKDILAAAQTGTGKTAGFSLPLLHRLL 64
Query: 62 -YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
RP +R LILTPTRELA QV ++ ++F ++ +V GG+ Q ALRS
Sbjct: 65 DGRPAASNCVRALILTPTRELAAQVEENVKSFSEFLPLKTAVVFGGVGINPQMKALRSGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D+++ATPGR++D L +V L L+LDEADR+L++GF +I +++L P +RQT+L
Sbjct: 125 DVLIATPGRLLD-LYQQNAVKFSQLETLVLDEADRMLDMGFIHDIKRILKLLPTKRQTLL 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT + ++ L + P ++S P+ T+ + +V I + ++ A L+SL +
Sbjct: 184 FSATFSSEITTLAQTITNNPEKVSTAPANTTVETVQQHLVPIDKSKKT---AALISLIKQ 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++FS TK A+R+ A + +A +HGN +Q R +AL F+ +D L+AT
Sbjct: 241 NGWKQVLVFSRTKHGANRIADKLSRARIPSAAIHGNKSQGARTKALSEFKSGEIDVLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
D+AARG+DI + VIN P YVHR+GRT RAG G A +FV+ ++ LK I
Sbjct: 301 DIAARGIDINELPIVINIDLPNTPADYVHRIGRTGRAGASGQAWSFVSIDELDQLKDI 358
>gi|302306296|ref|NP_982501.2| AAL041Cp [Ashbya gossypii ATCC 10895]
gi|442570013|sp|Q75EW9.2|RRP3_ASHGO RecName: Full=ATP-dependent rRNA helicase RRP3
gi|299788450|gb|AAS50325.2| AAL041Cp [Ashbya gossypii ATCC 10895]
gi|374105700|gb|AEY94611.1| FAAL041Cp [Ashbya gossypii FDAG1]
Length = 486
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 155/366 (42%), Positives = 214/366 (58%), Gaps = 7/366 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL+L L+ AC+ L ++KPTPIQ+ IP AL G+DI G A TGSGKTAAFA+P L RL
Sbjct: 70 ELDLVPELIEACDNLNFTKPTPIQSKAIPPALQGKDIIGLAQTGSGKTAAFAIPILNRLW 129
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + A IL PTRELA Q+ + + +R +VGG++ Q L P
Sbjct: 130 HDQQPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKPH 186
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQTML 180
I++ATPGR++DHL N+ L L L++DEADRLL++ F + +++ P K R T L
Sbjct: 187 IIIATPGRLMDHLENTKGFALRKLQFLVMDEADRLLDMEFGPVLDRILKNIPTKGRTTYL 246
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L ++
Sbjct: 247 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLIVVPGGL---KNTFLIYLLNE 303
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
I+F+ TK A R+ L L A LHG+L Q QR AL+LF+ L+AT
Sbjct: 304 FIGKTTIVFTRTKANAERISGLCNLLEFSATALHGDLNQNQRTGALDLFKAGKKSILVAT 363
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V VINY P D SY+HRVGRTARAGR G +V+ V+ D L+ I +
Sbjct: 364 DVAARGLDIPSVDLVINYDIPVDSKSYIHRVGRTARAGRSGKSVSLVSQYDLELILRIEE 423
Query: 361 RAGSKL 366
G KL
Sbjct: 424 VLGKKL 429
>gi|348689923|gb|EGZ29737.1| hypothetical protein PHYSODRAFT_309945 [Phytophthora sojae]
Length = 482
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 151/387 (39%), Positives = 222/387 (57%), Gaps = 8/387 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL + + A EA+G+S+P+ IQ IP L G+DI G A TGSGKT AF +P L+ LL
Sbjct: 35 ELGVDAAICEAIEAVGWSQPSKIQQQAIPHGLAGKDIIGLAETGSGKTGAFVIPILQSLL 94
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+L PTRELA Q+ E + ++C VVGG+ Q+ AL P
Sbjct: 95 RNPQRLYA---LVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDMMQQQVALARKPH 151
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+V+ATPGR++DHL N+ L + L+LDEADR+L + F EI+++V+L P R T LF
Sbjct: 152 VVIATPGRLVDHLENTKGFSLRTMKFLVLDEADRMLSMDFEEEINQIVQLMPAERNTYLF 211
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T V +L + SL P+++ P TL + + I + ++ VL + +
Sbjct: 212 SATMTSKVRKLQRASLKDPVKVEITHKFATPETLKQHYLFIPAKFKDCYLAYVLNEVAGQ 271
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+ V+IF+ T ++ ++ +A LHG + Q RL AL F+ + + L+ T
Sbjct: 272 S----VLIFASTCNGTQKVTLMLRNLGFQAICLHGQMPQPSRLGALNKFKAKARNVLVCT 327
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V VINY P Y+HRVGRTARAGR G A++FVT D L + I
Sbjct: 328 DVASRGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAISFVTQYDVELYQRIEH 387
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQME 387
G+KL + E+++ S+ + + +
Sbjct: 388 LLGTKLDAYPCEEETVLVMSERVNEAQ 414
>gi|154247132|ref|YP_001418090.1| DEAD/DEAH box helicase [Xanthobacter autotrophicus Py2]
gi|154161217|gb|ABS68433.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus
Py2]
Length = 559
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 151/362 (41%), Positives = 219/362 (60%), Gaps = 8/362 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
L L+ P++RA + PTPIQA IP L GRD+ G A TG+GKTAAFALP L+RL+
Sbjct: 41 NLGLAEPIVRALTEAQHVTPTPIQAEAIPQILAGRDLIGIAQTGTGKTAAFALPILDRLV 100
Query: 62 YRPKRIP---AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
P R P ++R L+L+PTREL+ Q+ EK + +I L +GG+ Q AL
Sbjct: 101 RHPHR-PEPKSVRALVLSPTRELSGQIVENFEKFGRHANISVSLAIGGVPMGRQIRALSR 159
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
D++VATPGR+ID + N +V LD + VL+LDEAD++L++GF I +VR P +R +
Sbjct: 160 GVDVLVATPGRLIDLVENH-AVKLDQVEVLVLDEADQMLDMGFVHAIRAIVRRLPHKRHS 218
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
+ FSAT+ + EL L P+R++ P AK + + V+ + + N+ +L +
Sbjct: 219 LFFSATMPHAIAELAGSMLRDPVRVAVTPVAKTADRVEQRVILVDK---ANKGQLLAEVL 275
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
S + ++FS TK A ++ + A + A +HGN +Q QR L FR+ + LI
Sbjct: 276 STEDIDRALVFSRTKHGADKVVRVLAKAGIAAEAIHGNKSQNQRDRVLAAFREGKIRTLI 335
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+AARG+D+ GV VIN+ P SYVHR+GRTARAGREG A++F +R+ L++I
Sbjct: 336 ATDIAARGIDVTGVSHVINFDLPNVPESYVHRIGRTARAGREGIAISFCDHEERAFLRSI 395
Query: 359 AK 360
K
Sbjct: 396 EK 397
>gi|389873083|ref|YP_006380502.1| ATP-dependent RNA helicase [Advenella kashmirensis WT001]
gi|388538332|gb|AFK63520.1| ATP-dependent RNA helicase [Advenella kashmirensis WT001]
Length = 476
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 153/365 (41%), Positives = 225/365 (61%), Gaps = 11/365 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E+ L LL+A A GY+KPTPIQ +PL + GRDI G+A TG+GKTAAF LP L RL+
Sbjct: 20 EVGLHPDLLKAVMASGYTKPTPIQEQAMPLIMDGRDIMGAAQTGTGKTAAFTLPLLHRLM 79
Query: 62 ------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
P R P +R LIL PTRELA QV +++ + + +R +V GG+ Q
Sbjct: 80 PMANSSMSPARHP-VRALILAPTRELADQVAESVKRYSHSSPLRVAVVFGGVDMNAQRDQ 138
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR ++++ATPGR++DH+ +V L ++VL+LDEADR+L++GF ++ +VRL PK
Sbjct: 139 LRKGCELLIATPGRLLDHIEQK-NVSLSQVSVLVLDEADRMLDMGFLPDLERIVRLLPKP 197
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQ++LFSAT + D+ +L + L P+ ++ P T+T+ + + + AVL
Sbjct: 198 RQSLLFSATFSNDIRKLARSFLNNPVEINVAPRNATAETVTQIAYPVAPNEK--KAAVLY 255
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
+L S+ S+VI+F TK A R+ + A +HG+ +QA+R++ALE F+ +
Sbjct: 256 TLKSRNL-SQVIVFVNTKIGASRVARELVSEGINAESIHGDRSQAERIKALEGFKSGEIA 314
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARGLD++G+ VIN P + YVHR+GRT RAG +G A+ F T + LL
Sbjct: 315 VLVATDVAARGLDVVGLPCVINMDLPYNAEDYVHRIGRTGRAGAKGEAIAFYTQTEERLL 374
Query: 356 KAIAK 360
+ I K
Sbjct: 375 EDIEK 379
>gi|432107717|gb|ELK32877.1| Putative ATP-dependent RNA helicase DDX47 [Myotis davidii]
Length = 455
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 149/366 (40%), Positives = 216/366 (59%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 28 DLGVTDVLCEACDQLGWTKPTKIQVEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 87
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL P
Sbjct: 88 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQTAVIVGGIDSMSQSLALAKKPH 144
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+V+ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 145 VVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 205 SATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 265 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 320
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G ++TFVT D L + I
Sbjct: 321 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEH 380
Query: 361 RAGSKL 366
G KL
Sbjct: 381 LIGKKL 386
>gi|390332079|ref|XP_781784.3| PREDICTED: probable ATP-dependent RNA helicase DDX49
[Strongylocentrotus purpuratus]
Length = 478
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 155/380 (40%), Positives = 224/380 (58%), Gaps = 14/380 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L L+R CEA+G +PTPIQ CIP L G D G A TGSGKTAAFALP L++L
Sbjct: 17 LGLHDWLVRQCEAVGIKQPTPIQHNCIPPILKGSDCIGCAKTGSGKTAAFALPILQKLSE 76
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P + L++TPTREL +Q+ + + +R +V+GG+ Q L P I
Sbjct: 77 DPY---GVFGLVVTPTRELGIQIAEQFRVLGKPIGLRVTVVIGGIDMVEQGRELSKKPHI 133
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V+ATPGR+ DH++++ + DL + L+LDEADRLLE F ++ + P +RQT+LFS
Sbjct: 134 VIATPGRLADHIKSTSTFDLHAIKFLVLDEADRLLEGNFGPDLEVIFDFLPAKRQTLLFS 193
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMREVNQEAVLLSLCSKT 241
AT+T+ + EL K+S+ KP +K P E++ R M ++A L+ + S+
Sbjct: 194 ATITDTMKELQKMSMDKPFSW----HSKAPVATVEQLDQRYVLMPAQVKDAYLMYIISE- 248
Query: 242 FTSK-----VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 296
FT K +IIF+ T + H L I+ ++ A LH + Q R+ +L +F+ HV
Sbjct: 249 FTEKNRDHSLIIFTSTCKYCHVLSIMLRNLGMQCATLHSLVKQKTRIASLAMFKSNHVRI 308
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 356
L+ATD+A+RGLDI VQ +IN+ P Y+HRVGRTARAGR G ++T VT D L++
Sbjct: 309 LVATDLASRGLDIPMVQMIINHNVPTSPKDYIHRVGRTARAGRGGMSITMVTQFDVKLVQ 368
Query: 357 AIAKRAGSKLKSRIVAEQSI 376
AI K +K+ V E+++
Sbjct: 369 AIEKTINTKMTEYKVPEKNV 388
>gi|431908355|gb|ELK11952.1| Putative ATP-dependent RNA helicase DDX47 [Pteropus alecto]
Length = 472
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 150/359 (41%), Positives = 213/359 (59%), Gaps = 8/359 (2%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 68
L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL P+R+
Sbjct: 52 LCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLF 111
Query: 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 128
A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL P IV+ATPG
Sbjct: 112 A---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIVIATPG 168
Query: 129 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 188
R+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T+LFSAT+T+
Sbjct: 169 RLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTLLFSATMTKK 228
Query: 189 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSKTFTSKVI 247
V +L + +L P++ + + L + + I + ++ +L L +F +
Sbjct: 229 VQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSF----M 284
Query: 248 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 307
IF T R +L A LHG ++Q++RL +L F+ + L+ATDVA+RGL
Sbjct: 285 IFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGL 344
Query: 308 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 366
DI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I G KL
Sbjct: 345 DIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKL 403
>gi|53712950|ref|YP_098942.1| ATP-dependent RNA helicase DeaD [Bacteroides fragilis YCH46]
gi|60681162|ref|YP_211306.1| ATP-dependent RNA helicase [Bacteroides fragilis NCTC 9343]
gi|265763047|ref|ZP_06091615.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_16]
gi|383117799|ref|ZP_09938542.1| hypothetical protein BSHG_0049 [Bacteroides sp. 3_2_5]
gi|423249596|ref|ZP_17230612.1| hypothetical protein HMPREF1066_01622 [Bacteroides fragilis
CL03T00C08]
gi|423256091|ref|ZP_17237019.1| hypothetical protein HMPREF1067_03663 [Bacteroides fragilis
CL03T12C07]
gi|423258064|ref|ZP_17238987.1| hypothetical protein HMPREF1055_01264 [Bacteroides fragilis
CL07T00C01]
gi|423264968|ref|ZP_17243971.1| hypothetical protein HMPREF1056_01658 [Bacteroides fragilis
CL07T12C05]
gi|423268460|ref|ZP_17247432.1| hypothetical protein HMPREF1079_00514 [Bacteroides fragilis
CL05T00C42]
gi|423273980|ref|ZP_17252927.1| hypothetical protein HMPREF1080_01580 [Bacteroides fragilis
CL05T12C13]
gi|423285051|ref|ZP_17263934.1| hypothetical protein HMPREF1204_03472 [Bacteroides fragilis HMW
615]
gi|52215815|dbj|BAD48408.1| ATP-dependent RNA helicase DeaD [Bacteroides fragilis YCH46]
gi|60492596|emb|CAH07368.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC
9343]
gi|251946848|gb|EES87130.1| hypothetical protein BSHG_0049 [Bacteroides sp. 3_2_5]
gi|263255655|gb|EEZ27001.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_16]
gi|387777510|gb|EIK39607.1| hypothetical protein HMPREF1055_01264 [Bacteroides fragilis
CL07T00C01]
gi|392649282|gb|EIY42960.1| hypothetical protein HMPREF1067_03663 [Bacteroides fragilis
CL03T12C07]
gi|392655681|gb|EIY49323.1| hypothetical protein HMPREF1066_01622 [Bacteroides fragilis
CL03T00C08]
gi|392703744|gb|EIY96885.1| hypothetical protein HMPREF1079_00514 [Bacteroides fragilis
CL05T00C42]
gi|392704701|gb|EIY97836.1| hypothetical protein HMPREF1056_01658 [Bacteroides fragilis
CL07T12C05]
gi|392707413|gb|EIZ00532.1| hypothetical protein HMPREF1080_01580 [Bacteroides fragilis
CL05T12C13]
gi|404579640|gb|EKA84354.1| hypothetical protein HMPREF1204_03472 [Bacteroides fragilis HMW
615]
Length = 427
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 145/365 (39%), Positives = 218/365 (59%), Gaps = 5/365 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
LNL P+L+A GY+ PTPIQ IP+ L G+D+ G A TG+GKTAAF++P L++L
Sbjct: 5 NLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPILQKL- 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+ I+ L+LTPTRELA+Q+ E ++T ++ ++ GG+ K Q ALRS
Sbjct: 64 YKTDHRKGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALRSGIQ 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++D + + L L +LDEADR+L++GF +I +++L P RRQT+ F
Sbjct: 124 ILVATPGRLLDLISQGF-ISLSSLDFFVLDEADRMLDMGFIHDIKRILKLLPARRQTLFF 182
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ +++ L LTKP ++ P++ ++++V + + ++ +L+ L T
Sbjct: 183 SATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKKE---KKDLLIHLLKDT 239
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
V+IF+ TK A +L + A + A +HGN TQ R AL F+ + LIATD
Sbjct: 240 SIESVLIFTRTKYGADKLARVLTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALIATD 299
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARG+D+ + VINY P +YVHR+GRT RAG EG A++F + LK I K
Sbjct: 300 IAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAISFCESEELPYLKDIQKL 359
Query: 362 AGSKL 366
G +
Sbjct: 360 IGKNI 364
>gi|117646246|emb|CAL38590.1| hypothetical protein [synthetic construct]
gi|208967637|dbj|BAG72464.1| apolipoprotein L domain containing 1 [synthetic construct]
Length = 455
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 149/366 (40%), Positives = 215/366 (58%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TG GKT AFALP L LL
Sbjct: 28 DLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGPGKTGAFALPILNALL 87
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL P
Sbjct: 88 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 265 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 320
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 321 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 380
Query: 361 RAGSKL 366
G KL
Sbjct: 381 LIGKKL 386
>gi|398855606|ref|ZP_10612087.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM80]
gi|398230573|gb|EJN16591.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM80]
Length = 446
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 224/373 (60%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 QFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +PD
Sbjct: 64 GPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GFS ++ LV CP R+QTMLF
Sbjct: 124 ILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFSEDVQRLVDECPNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E+I L P L + ++ ST ++++ + ++E ++ L +
Sbjct: 183 SATTGGSGLREMIAKVLNNPEHLQLNAVSQLNSTTRQQIITADHNQ--HKEQIVNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K IIF+ T+ A R+ KA LHG Q R A++ ++ V L+AT
Sbjct: 241 ETYQKAIIFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I +
Sbjct: 301 DVAARGLDVDGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQSFERRTIKE 373
>gi|197337698|ref|YP_002157744.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
gi|197314950|gb|ACH64399.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
Length = 496
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 151/357 (42%), Positives = 215/357 (60%), Gaps = 5/357 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A E GYS P+PIQ IP + G+D+ +A TG+GKTA F LP LERL
Sbjct: 6 LGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLERLSN 65
Query: 63 RPKR-IPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
PKR +R L+LTPTRELA QVH +EK ++ + +V GG+ Q LR D
Sbjct: 66 GPKRKFNQVRALVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQMQRLRRGVD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++D L N ++ D L +L+LDEADR+L++GF +I +++ PK RQ +LF
Sbjct: 126 VLVATPGRLLD-LANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILAKLPKNRQNLLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++++ +L K + P+ +S AKR +T + M + + VL L
Sbjct: 185 SATFSDEIRQLAKGLVKDPVEISV---AKRNTTAETVEQSVYVMDKGRKPKVLTKLIKDN 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++FS TK A+RL + AA +HGN +Q R +AL F+ V L+ATD
Sbjct: 242 DWKQVLVFSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
+AARGLDI + VIN P+ YVHR+GRT RAG G A++FV++++ L AI
Sbjct: 302 IAARGLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSEDEAKELFAI 358
>gi|308502005|ref|XP_003113187.1| hypothetical protein CRE_25313 [Caenorhabditis remanei]
gi|308265488|gb|EFP09441.1| hypothetical protein CRE_25313 [Caenorhabditis remanei]
Length = 506
Score = 278 bits (710), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 155/387 (40%), Positives = 217/387 (56%), Gaps = 18/387 (4%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL +S+PL AC+ LG+ KP+ IQ A +P AL G+D+ G A TGSGKT AFA+P L+ LL
Sbjct: 58 ELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLL 117
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ A L+LTPTRELA Q+ E + + ++VGG+ Q AL P
Sbjct: 118 DHPQ---AFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPH 174
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ +L L LI+DEADR+L + F E+ +++++ PK R+T LF
Sbjct: 175 IIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPKERRTYLF 234
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ V +L + SL P R+S K L + + I +E L+ L ++
Sbjct: 235 SATMTKKVSKLERASLRDPARVSVSTRYKTVDNLKQHYIFIPNKY---KETYLVYLLNEH 291
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQA------------QRLEALELF 289
+ I+F T A ++ ++ ++A LHG ++Q +RL +L F
Sbjct: 292 AGNSAIVFCATCATAMQIAVMLRQLGMQAVPLHGQMSQVRFERPLQVGSLEKRLGSLNKF 351
Query: 290 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 349
+ + D L+ TDVAARGLDI V VINY P YVHRVGRTARAGR G A+T VT
Sbjct: 352 KSKARDILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGLAITVVTQ 411
Query: 350 NDRSLLKAIAKRAGSKLKSRIVAEQSI 376
D + I G KL E +
Sbjct: 412 YDVEGYQKIEANLGKKLDEYKCVENEV 438
>gi|91088115|ref|XP_969791.1| PREDICTED: similar to GA21647-PA [Tribolium castaneum]
gi|270012107|gb|EFA08555.1| hypothetical protein TcasGA2_TC006210 [Tribolium castaneum]
Length = 451
Score = 278 bits (710), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 160/409 (39%), Positives = 232/409 (56%), Gaps = 22/409 (5%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L L +ACE L +++P+ IQ IP+AL G+D+ G A TGSGKTAAFALP L+ LL
Sbjct: 23 DLGLVDVLCKACEQLKWAQPSKIQKEAIPVALQGKDVIGLAETGSGKTAAFALPILQSLL 82
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A LILTPTRELA Q+ IE + ++C ++VGG+ Q L P
Sbjct: 83 ENPQRYFA---LILTPTRELAFQISEQIEALGANIGVKCAVIVGGMDMMSQALILAKKPH 139
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++DHL N+ +L L L++DEADR+L + F E+ +++++ P+ R T LF
Sbjct: 140 ILIATPGRLLDHLENTKGFNLKALKYLVMDEADRILNMDFEVEVDKILKVIPRERHTFLF 199
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSK 240
SAT+T+ V +L + L P+++ + L + + I + ++V +L +
Sbjct: 200 SATMTKKVKKLQRACLRDPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNEMAGN 259
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L L A LHG ++Q +RL AL F+ ++ LI+T
Sbjct: 260 SF----MIFCSTCNNTIRTALLLRNLGLTAVPLHGQMSQNKRLAALTKFKAKNRSILIST 315
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V VIN+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 316 DVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRI-- 373
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 409
EQ I K + + ED+V + + E + L K EM+
Sbjct: 374 ------------EQLIGKQLPLYKTEEDEVMVLQERVAESQRLAKMEMK 410
>gi|423687487|ref|ZP_17662290.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri SR5]
gi|371493270|gb|EHN68873.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri SR5]
Length = 500
Score = 278 bits (710), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 151/357 (42%), Positives = 215/357 (60%), Gaps = 5/357 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A E GYS P+PIQ IP + G+D+ +A TG+GKTA F LP LERL
Sbjct: 6 LGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLERLSN 65
Query: 63 RPKR-IPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
PKR +R L+LTPTRELA QVH +EK ++ + +V GG+ Q LR D
Sbjct: 66 GPKRKFNQVRALVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQMQRLRRGVD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++D L N ++ D L +L+LDEADR+L++GF +I +++ PK RQ +LF
Sbjct: 126 VLVATPGRLLD-LANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILAKLPKNRQNLLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++++ +L K + P+ +S AKR +T + M + + VL L
Sbjct: 185 SATFSDEIRQLAKGLVKDPVEISV---AKRNTTAETVEQSVYVMDKGRKPKVLTKLIKDN 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++FS TK A+RL + AA +HGN +Q R +AL F+ V L+ATD
Sbjct: 242 DWKQVLVFSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
+AARGLDI + VIN P+ YVHR+GRT RAG G A++FV++++ L AI
Sbjct: 302 IAARGLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSEDEAKELFAI 358
>gi|255722942|ref|XP_002546405.1| ATP-dependent rRNA helicase RRP3 [Candida tropicalis MYA-3404]
gi|240130922|gb|EER30484.1| ATP-dependent rRNA helicase RRP3 [Candida tropicalis MYA-3404]
Length = 483
Score = 278 bits (710), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 146/365 (40%), Positives = 217/365 (59%), Gaps = 6/365 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNL LL + E + ++KPTPIQ+ IP AL G+DI G A TGSGKTAAFA+P L+ L
Sbjct: 72 ELNLVPDLLESIENMKFTKPTPIQSESIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLW 131
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + P L+L PTRELA Q+ + + +R +VGG+ Q L P
Sbjct: 132 HAQQ--PYFG-LVLAPTRELAFQIKETFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPH 188
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL ++ L +L L++DEADRLL++ F + +++++ P +R T LF
Sbjct: 189 IIVATPGRIMDHLEHTKGFTLKNLKYLVMDEADRLLDMDFGPALDKILKVIPTKRTTYLF 248
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T +++L + SL P+R++ + L + ++ + + + +L+ L ++
Sbjct: 249 SATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVN---DGYKNTILIHLLNEF 305
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ +I+F+ T A R +L + A LHG L+Q+QRL +L F+ + LIATD
Sbjct: 306 MSKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNTANILIATD 365
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V VINY P D +Y+HRVGRTARAGR G +++ +T D + I
Sbjct: 366 VAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRIESV 425
Query: 362 AGSKL 366
G KL
Sbjct: 426 LGYKL 430
>gi|312083101|ref|XP_003143720.1| ATP-dependent RNA helicase in chromosome III [Loa loa]
gi|307761116|gb|EFO20350.1| ATP-dependent RNA helicase in chromosome III [Loa loa]
Length = 463
Score = 278 bits (710), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 158/407 (38%), Positives = 230/407 (56%), Gaps = 20/407 (4%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ L + KPT +Q A +P A RDI G A TGSGKTAAFA+P L+ LL
Sbjct: 28 QLGVTDVLCEACDRLNWKKPTKVQIAALPHAFKKRDIIGLAETGSGKTAAFAIPILQALL 87
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+++ A L+LTPTRELA Q+ E + I ++VGG+ T Q AL P
Sbjct: 88 ETPQKLFA---LVLTPTRELAFQIGEQFEALGASIGILIAVIVGGVDTVTQSLALAKRPH 144
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++DHL N+ +L L L++DEADR+L + F E+ +++++ PK R+T L+
Sbjct: 145 VIVATPGRLVDHLENTKGFNLRALKYLVMDEADRILNMDFEVEVEKILKVIPKERRTYLY 204
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ V +L + SL P+R+ + L + + I +EA L+ + ++
Sbjct: 205 SATMTKKVAKLERASLNDPVRIEVSSKYQTVDKLKQYYIFIPYKY---KEAYLVYILNEM 261
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
I+F T +A R ++ A LHG ++QA+RL +L F+ + LI TD
Sbjct: 262 AGQTAIVFCSTCVSALRTALMLRKLGFGAVPLHGQMSQAKRLGSLNKFKSKTSTTLICTD 321
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V V+NY P YVHRVGRTARAGR G AVTFVT D + + I +
Sbjct: 322 VASRGLDIPHVDLVLNYDVPTQSKDYVHRVGRTARAGRSGVAVTFVTQYDVEIYQRIERL 381
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEM 408
G KL + E +E+ V +++ E + L K EM
Sbjct: 382 IGKKL--------------PLFETVENDVMLLMERVEEAQKLAKREM 414
>gi|388856716|emb|CCF49676.1| probable DEAD box protein (putative RNA helicase) [Ustilago hordei]
Length = 556
Score = 278 bits (710), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 151/357 (42%), Positives = 206/357 (57%), Gaps = 6/357 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + ++ AC +G+ PTPIQ IP AL RD+ G A TGSGKTAAF +P L+ L
Sbjct: 113 DLGVIPQIVEACTNMGFKHPTPIQVKSIPEALQSRDVIGLAQTGSGKTAAFTIPILQALW 172
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
PK A +L PTRELA Q+ +E + +R +VGG+ Q AL P
Sbjct: 173 DNPKPFFAC---VLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSKRPH 229
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR+ DHL N+ L L L++DEADRLL++ F I +L++ P+ R+TMLF
Sbjct: 230 VIVATPGRLQDHLENTKGFSLRGLQYLVMDEADRLLDMDFGPIIDKLLQSIPRERRTMLF 289
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T V +L + SL P+R+ D STL + + M +++ L+ L ++
Sbjct: 290 SATMTTKVAKLQRASLKNPVRVEVDTKYTTVSTLKQHYL---FMPFAHKDTYLVHLANEQ 346
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+I+F+ T + RL IL L A LHG L+Q RL AL F+ L+ATD
Sbjct: 347 AGHSIIVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKTGGRSILVATD 406
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
VA+RGLDI V V+NY P + Y+HRVGRTARAGR G +VT VT D LL+ I
Sbjct: 407 VASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVELLQRI 463
>gi|344266640|ref|XP_003405388.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Loxodonta
africana]
Length = 461
Score = 278 bits (710), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 149/366 (40%), Positives = 215/366 (58%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 34 DLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 93
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL P
Sbjct: 94 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 150
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 151 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 210
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 211 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGN 270
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F ++F T R +L A LHG ++Q +RL +L F+ + L+AT
Sbjct: 271 SF----MVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQTKRLGSLNKFKAKARSILLAT 326
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G ++TFVT D L + I
Sbjct: 327 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEH 386
Query: 361 RAGSKL 366
G KL
Sbjct: 387 LIGKKL 392
>gi|327272750|ref|XP_003221147.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Anolis carolinensis]
Length = 445
Score = 278 bits (710), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 157/423 (37%), Positives = 235/423 (55%), Gaps = 8/423 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL ++ L AC+ LG+ PT IQ IPLAL GRDI G A TGSGKT AFALP L+ LL
Sbjct: 20 ELGVTEVLCEACDQLGWKTPTKIQVESIPLALQGRDIIGLAETGSGKTGAFALPILQALL 79
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A L+LTPTRELA Q+ E + ++ ++VGG+ Q AL P
Sbjct: 80 ETPQRFFA---LVLTPTRELAFQISEQFEALGSSIGVQTAVIVGGIDMMAQSLALAKKPH 136
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 137 VIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 196
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + V I + ++ +L L
Sbjct: 197 SATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQYYVFIPSKFKDSYLVYILNELAGN 256
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG + Q +RL +L F+ + L+AT
Sbjct: 257 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMNQNKRLGSLNKFKAKARSVLLAT 312
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++TFVT D L + I
Sbjct: 313 DVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEH 372
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 420
G KL + E + ++ + + + LQ++ +++ R+ E AE + +
Sbjct: 373 LIGKKLPAFPTQEDEVMMLTERVAEAQRFARMELQQKGDKKRSREEANEPDDAEGAMGVR 432
Query: 421 EEI 423
++
Sbjct: 433 NKV 435
>gi|59713334|ref|YP_206109.1| RNA helicase [Vibrio fischeri ES114]
gi|59481582|gb|AAW87221.1| RNA helicase [Vibrio fischeri ES114]
Length = 500
Score = 278 bits (710), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 151/357 (42%), Positives = 215/357 (60%), Gaps = 5/357 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A E GYS P+PIQ IP + G+D+ +A TG+GKTA F LP LERL
Sbjct: 6 LGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLERLSN 65
Query: 63 RPKR-IPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
PKR +R L+LTPTRELA QVH +EK ++ + +V GG+ Q LR D
Sbjct: 66 GPKRKFNQVRALVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQMQRLRRGVD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++D L N ++ D L +L+LDEADR+L++GF +I +++ PK RQ +LF
Sbjct: 126 VLVATPGRLLD-LANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILAKLPKNRQNLLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++++ +L K + P+ +S AKR +T + M + + VL L
Sbjct: 185 SATFSDEIRQLAKGLVKDPVEISV---AKRNTTAETVEQSVYVMDKGRKPKVLTKLIKDN 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++FS TK A+RL + AA +HGN +Q R +AL F+ V L+ATD
Sbjct: 242 DWKQVLVFSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
+AARGLDI + VIN P+ YVHR+GRT RAG G A++FV++++ L AI
Sbjct: 302 IAARGLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSEDEAKELFAI 358
>gi|119596071|gb|EAW75665.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, isoform CRA_a [Homo
sapiens]
Length = 440
Score = 278 bits (710), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 126/233 (54%), Positives = 172/233 (73%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 191 DMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 250
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR+ PD
Sbjct: 251 YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPD 310
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 311 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 370
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL 234
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++
Sbjct: 371 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIV 423
>gi|288925923|ref|ZP_06419853.1| ATP-dependent RNA helicase RhlE [Prevotella buccae D17]
gi|288337347|gb|EFC75703.1| ATP-dependent RNA helicase RhlE [Prevotella buccae D17]
Length = 375
Score = 277 bits (709), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 149/367 (40%), Positives = 224/367 (61%), Gaps = 6/367 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELN+S+P+L+A E Y PTPIQ IP+ L GRD+ G A TG+GKTAAFA+P +++L
Sbjct: 5 ELNISKPILKALELKEYETPTPIQQKAIPIGLEGRDLLGIAQTGTGKTAAFAIPIIQQLA 64
Query: 62 YRP--KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
R I+ LILTPTRELA+Q+ + ++FT +RCC++ GG+S Q L
Sbjct: 65 KSADDNRRRDIKALILTPTRELAIQIEECFKDYSKFTRLRCCVIFGGVSQNGQVKELERG 124
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
DI++ATPGR++D + + + L+ + +LDEADR+L++GF +I +L+ L PKRRQT+
Sbjct: 125 VDILIATPGRLLDLISQHI-ITLEHICHFVLDEADRMLDMGFIHDIKKLIPLLPKRRQTL 183
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
LFSAT+ E + +L K L KP R+ P + T+ + + + + ++ + +L+S+
Sbjct: 184 LFSATMPETIAKLSKSLLYKPARVEVAPVSSVVDTIEQRLYFVEKPQKTD---LLVSVLK 240
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
++FS TK A R+ ++ +HGN +Q R AL F+ ++A
Sbjct: 241 NDGNRSALVFSRTKHGADRIARKLKARHIECEAIHGNKSQNARQRALTNFKSGKTRVIVA 300
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TD+AARG+DI +Q VINY P +YVHR+GRT RAG G A+TF T ++R +++ I
Sbjct: 301 TDIAARGIDIANLQMVINYDLPDVAETYVHRIGRTGRAGNSGVALTFCTQDERPMVRDIQ 360
Query: 360 KRAGSKL 366
K G KL
Sbjct: 361 KLTGKKL 367
>gi|170725067|ref|YP_001759093.1| DEAD/DEAH box helicase [Shewanella woodyi ATCC 51908]
gi|169810414|gb|ACA84998.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
51908]
Length = 494
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 146/358 (40%), Positives = 216/358 (60%), Gaps = 7/358 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE LL
Sbjct: 6 LGLSAPILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE-LLS 64
Query: 63 RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
R KR PA +R L+LTPTRELA QV +E + +R ++ GG+ Q + L
Sbjct: 65 RGKRAPAKQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVGIGPQISKLGKGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DI+VATPGR++D L N +V L VL+LDEADR+L++GF +I +++++ P +RQ ++
Sbjct: 125 DILVATPGRLLD-LYNQGAVSFKQLEVLVLDEADRMLDMGFIHDIKKILKILPAKRQNLM 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++D+ L K + P+ +S P T+ + + + + ++ A L+ L +
Sbjct: 184 FSATFSDDIRNLAKGLVNNPVEISVTPRNATAKTVEQYIYPVDQKQKT---AALIHLVKQ 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++FS TK A+R+ + L AA +HGN +Q R +AL F+ V L+AT
Sbjct: 241 NEWKQVLVFSRTKHGANRIAKNLEASGLTAAAIHGNKSQGARTKALANFKSGEVRVLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
D+AARG+DI + V+N+ P YVHR+GRT RAG G AV+ V+ ++ LL+ I
Sbjct: 301 DIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGANGQAVSLVSGDESKLLRDI 358
>gi|109095724|ref|XP_001086352.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 3
[Macaca mulatta]
Length = 455
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 149/366 (40%), Positives = 215/366 (58%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT I IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 28 DLGVTDVLCEACDQLGWTKPTKILIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 87
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL P
Sbjct: 88 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 265 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 320
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 321 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 380
Query: 361 RAGSKL 366
G KL
Sbjct: 381 LIGKKL 386
>gi|403286623|ref|XP_003934579.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Saimiri
boliviensis boliviensis]
Length = 547
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 216/366 (59%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL
Sbjct: 120 DLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 179
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL P
Sbjct: 180 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 236
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 237 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 296
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 297 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 356
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q++RL +L F+ + L+AT
Sbjct: 357 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLAT 412
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 413 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 472
Query: 361 RAGSKL 366
G KL
Sbjct: 473 LIGKKL 478
>gi|242003922|ref|XP_002422909.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212505802|gb|EEB10171.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 458
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 148/366 (40%), Positives = 215/366 (58%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L + CE+L + PT IQ IPL L GRD+ G A TGSGKT AFALP L+ LL
Sbjct: 26 DLGIVDVLCQTCESLKWKAPTKIQKEAIPLTLQGRDVIGLAETGSGKTGAFALPILQALL 85
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A LILTPTRELA Q+ + + ++ ++VGG+ Q L P
Sbjct: 86 QNPQRYFA---LILTPTRELAFQISEQFQALGSKIGVKTAVIVGGMDMMSQALLLAKKPH 142
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR++DHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T+LF
Sbjct: 143 VIIATPGRLVDHLENTKGFNLKALKFLVMDEADRILNMDFEVEVDKILKVIPRERRTLLF 202
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSK 240
SAT+T+ V +L + SL P+++ + L + + I + ++V +++ +
Sbjct: 203 SATMTQKVQKLQRASLHDPVKVEVSSKYQTVDKLQQYYLFIPVKFKDVYLVSIINEMAGN 262
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
TF +IF GT R +L A LHG ++Q +RL AL FR ++ LI+T
Sbjct: 263 TF----MIFCGTCHNTLRTALLLRQLGFTAIPLHGQMSQNKRLGALTKFRAKNRSILIST 318
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V VIN+ P Y+HRVGRTARAGR G A+TFVT D L + I +
Sbjct: 319 DVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRIEQ 378
Query: 361 RAGSKL 366
G KL
Sbjct: 379 LIGKKL 384
>gi|320583325|gb|EFW97540.1| ATP-dependent rRNA helicase, putative [Ogataea parapolymorpha DL-1]
Length = 470
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 158/406 (38%), Positives = 228/406 (56%), Gaps = 6/406 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L +L A E L +S PTPIQA +P +L GRDI G A TGSGKTAAFA+P L+ L
Sbjct: 71 ELGLQPDILDAIEKLNFSTPTPIQAQSLPHSLQGRDIIGIAQTGSGKTAAFAIPILQALW 130
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ P +L PTRELA Q+ + + +RC +VGG+ Q L P
Sbjct: 131 --EAQTPYF-ACVLAPTRELAYQIRETFDALGVNMGLRCSTIVGGMDMMEQAKELMRKPH 187
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++DHL N+ L L L++DEADRLL++ F + ++ + P+ R+T LF
Sbjct: 188 VIVATPGRLMDHLENTKGFSLKALKYLVMDEADRLLDMEFGPVLDRILNIIPRERKTYLF 247
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SATLT V++L + SL P++++ + TL + ++ + + + L+ L ++
Sbjct: 248 SATLTSKVEKLQRASLIDPVKIAVNDKYSTVDTLIQTLMVVP---DGYKNTYLIYLLNEY 304
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
VI+F+ T A ++ +L + A LHG LTQAQRL AL F+ L+ATD
Sbjct: 305 VGKSVIVFARTCAHAQKVALLARILGFSAIPLHGQLTQAQRLGALNKFKSGDKQILVATD 364
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V V+NY P D +Y+HRVGRTARAGR G +V+ VT D L+ I K
Sbjct: 365 VAARGLDIPSVDLVVNYDIPTDSKAYIHRVGRTARAGRSGKSVSLVTQYDLELILRIEKV 424
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAE 407
KL + + I +++ Q + ++E +R RK +
Sbjct: 425 IDMKLPKEVPNKNEILALHDSVDRATAQAVSKVKEFHSKRKFRKKD 470
>gi|241959442|ref|XP_002422440.1| ATP-dependent rRNA helicase, putative; ribosomal RNA-processing
protein, putative [Candida dubliniensis CD36]
gi|223645785|emb|CAX40447.1| ATP-dependent rRNA helicase, putative [Candida dubliniensis CD36]
Length = 499
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 149/368 (40%), Positives = 217/368 (58%), Gaps = 12/368 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNL LL + E++ ++KPTPIQ+ IP AL G+DI G A TGSGKTAAFA+P L+ L
Sbjct: 90 ELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLW 149
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + A L+L PTRELA Q+ + + +R +VGG+ Q L P
Sbjct: 150 HAQQPYFA---LVLAPTRELAFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPH 206
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL ++ L +L L++DEADRLL++ F + +++++ P +R T LF
Sbjct: 207 IIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRITYLF 266
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN---QEAVLLSLC 238
SAT+T +++L + SL P+++S + L I+ M VN + +L+ L
Sbjct: 267 SATMTNKIEKLQRASLHNPVKVSVSSKYQTADNL------IQSMMLVNDGYKNTILIHLL 320
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
++ +I+F+ T A R +L + A LHG L+Q+QRL +L F+ + L+
Sbjct: 321 NEFIGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILV 380
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATDVAARGLDI V VINY P D +Y+HRVGRTARAGR G +++ +T D + I
Sbjct: 381 ATDVAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRI 440
Query: 359 AKRAGSKL 366
G KL
Sbjct: 441 ENVLGKKL 448
>gi|395763810|ref|ZP_10444479.1| ATP-dependent RNA helicase [Janthinobacterium lividum PAMC 25724]
Length = 515
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 147/365 (40%), Positives = 220/365 (60%), Gaps = 11/365 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L+ + RA GY+ PTPIQ IP+ L GRD+ G+A TG+GKTA F+LP ++ L+
Sbjct: 41 DFGLAPEIQRALTDQGYTHPTPIQEQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQLLM 100
Query: 62 ------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
P R P +R LILTPTRELAVQV ++ A+ T +R +V GG+ K Q
Sbjct: 101 AHASSSMSPARHP-VRALILTPTRELAVQVAENVKAYAKHTPLRSTVVFGGMDMKPQTVL 159
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR +IV+ATPGR++DH+ ++ L + +L++DEADR+L++GF ++ ++ L PK+
Sbjct: 160 LRGGVEIVIATPGRLLDHIEQK-NISLSQVQMLVMDEADRMLDMGFLPDLQRIINLLPKQ 218
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQ ++FSAT + ++ +L L PL + S + +T+ V ++ E + A++
Sbjct: 219 RQNLMFSATFSPEIKKLAATFLNDPLTIEVARSNQTADKVTQVVYKVS---EDQKHALVA 275
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
L + +VI+FS TK A RL + + A +HG+ +Q +R+ ALE F+K +D
Sbjct: 276 HLLRQRDLKQVIVFSNTKIGASRLARVLEQEGMSATAIHGDKSQQERMAALEAFKKGEID 335
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARGLDI + VIN+ P + YVHR+GRT RAG G A++ +D D LL
Sbjct: 336 VLVATDVAARGLDISDLPCVINFDLPYNAEDYVHRIGRTGRAGASGDAISIYSDKDERLL 395
Query: 356 KAIAK 360
I K
Sbjct: 396 ADIEK 400
>gi|404492159|ref|YP_006716265.1| ATP-dependent RNA helicase RhlE [Pelobacter carbinolicus DSM 2380]
gi|77544268|gb|ABA87830.1| ATP-dependent RNA helicase RhlE [Pelobacter carbinolicus DSM 2380]
Length = 432
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 152/371 (40%), Positives = 222/371 (59%), Gaps = 11/371 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
N + + A GY PTPIQA IP + GRD+ G A TG+GKTAAFALP L+RL+
Sbjct: 6 FNFHPQVAKGIVAAGYVTPTPIQAQAIPSVIDGRDVMGLAQTGTGKTAAFALPILQRLID 65
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P+ +R L++ PTRELA Q+H I ++ + T +R V GG++ + Q L+ DI
Sbjct: 66 GPRG--RLRALVVAPTRELAEQIHQAIGELGRHTGLRSMTVYGGVNIRPQIAGLKRGVDI 123
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
VVA PGR+IDH+ ++DL ++ VL+LDEAD++ ++GF + +++R P +RQT+LFS
Sbjct: 124 VVACPGRLIDHI-GQKTIDLSNIEVLVLDEADQMFDMGFFPAVRQILRHVPAQRQTLLFS 182
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVR--IRRMREVNQEAVLLSLCSK 240
AT+ + L LT P+ + +T E V + + + + A+LL L S
Sbjct: 183 ATMPAAIRRLSGEVLTSPMTVQVG------NTTPAETVSHALYPVAQHQKTAMLLELLSA 236
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+ V++F+ TK A RL + G A +A L GNL+QA+R EAL FR + L+AT
Sbjct: 237 VDSRSVLVFTRTKHRAKRLGLQLGKAGYQATSLQGNLSQARRQEALTGFRDGKYEILVAT 296
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARG+D+ V VINY P +YVHR+GRT RA R+G A T VT D ++++AI K
Sbjct: 297 DIAARGIDVSQVSHVINYDIPDTAEAYVHRIGRTGRASRKGEAFTLVTGEDNAMVRAIEK 356
Query: 361 RAGSKLKSRIV 371
+ L+ R +
Sbjct: 357 VLDASLERRTI 367
>gi|398963567|ref|ZP_10679679.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM30]
gi|398149569|gb|EJM38213.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM30]
Length = 446
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 153/373 (41%), Positives = 225/373 (60%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L+ LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 QFALNERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +PD
Sbjct: 64 GPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV CP R+QTMLF
Sbjct: 124 ILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E+I L P L + ++ ST ++++ + ++E ++ L +
Sbjct: 183 SATTGGSGLREMIAKVLNNPEHLQLNAVSQLNSTTRQQIITADHNQ--HKEQIVNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+AT
Sbjct: 241 ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I +
Sbjct: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQSFERRTIKE 373
>gi|402307634|ref|ZP_10826656.1| DEAD/DEAH box helicase [Prevotella sp. MSX73]
gi|400378346|gb|EJP31204.1| DEAD/DEAH box helicase [Prevotella sp. MSX73]
Length = 375
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 149/367 (40%), Positives = 224/367 (61%), Gaps = 6/367 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELN+S+P+L+A E Y PTPIQ IP+ L GRD+ G A TG+GKTAAFA+P +++L
Sbjct: 5 ELNISKPILKALELKEYETPTPIQQKAIPIGLEGRDLLGIAQTGTGKTAAFAIPIIQQLA 64
Query: 62 YRP--KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
R I+ LILTPTRELA+Q+ + ++FT +RCC++ GG+S Q L
Sbjct: 65 KSADDNRRRDIKALILTPTRELAIQIEECFKDYSKFTRLRCCVIFGGVSQNGQVKELERG 124
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
DI++ATPGR++D + + + L+ + +LDEADR+L++GF +I +L+ L PKRRQT+
Sbjct: 125 VDILIATPGRLLDLISQHI-ITLEHIRHFVLDEADRMLDMGFIHDIKKLIPLLPKRRQTL 183
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
LFSAT+ E + +L K L KP R+ P + T+ + + + + ++ + +L+S+
Sbjct: 184 LFSATMPETIAKLSKSLLYKPARVEVAPVSSVVDTIEQRLYFVEKPQKTD---LLVSVLK 240
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
++FS TK A R+ ++ +HGN +Q R AL F+ ++A
Sbjct: 241 NAGNRSALVFSRTKHGADRIARKLKARHIECEAIHGNKSQNARQRALTNFKSGKTRVIVA 300
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TD+AARG+DI +Q VINY P +YVHR+GRT RAG G A+TF T ++R +++ I
Sbjct: 301 TDIAARGIDIANLQMVINYDLPDVAETYVHRIGRTGRAGNSGVALTFCTQDERPMVRDIQ 360
Query: 360 KRAGSKL 366
K G KL
Sbjct: 361 KLTGKKL 367
>gi|402590562|gb|EJW84492.1| DEAD box ATP-dependent RNA helicase [Wuchereria bancrofti]
Length = 462
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 156/406 (38%), Positives = 229/406 (56%), Gaps = 20/406 (4%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L ++ L AC+ L + KPT +Q A +P A RDI G A TGSGKTAAFA+P L+ LL
Sbjct: 29 LGVTDVLCEACDRLNWKKPTKVQIAALPHAFKKRDIIGLAETGSGKTAAFAIPILQALLE 88
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P+++ A L+LTPTRELA Q+ E + I ++VGG+ T Q AL P +
Sbjct: 89 TPQKLFA---LVLTPTRELAFQIGEQFEALGASIGILIAVIVGGIDTVTQSLALAKRPHV 145
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+VATPGR++DHL N+ +L L L++DEADR+L + F E+ +++++ PK R+T L+S
Sbjct: 146 IVATPGRLVDHLENTKGFNLRALKYLVMDEADRILNMDFEVELEKILKVIPKERRTYLYS 205
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T+ V +L + SL P+R+ + L + + I +EA L+ + ++
Sbjct: 206 ATMTKKVAKLERASLVDPVRIEVSSKYQTVDKLKQYYIFIPYKY---KEAYLIYILNEMA 262
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
I+F T +A + ++ A LHG ++QA+RL +L F+ + L+ TDV
Sbjct: 263 GQTAIVFCSTCASALKTALMLRKLGFGAVPLHGQMSQAKRLGSLNKFKSKASTVLVCTDV 322
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI V V+NY P YVHRVGRTARAGR G AVTFVT D + + I +
Sbjct: 323 ASRGLDIPHVDIVLNYDVPTQSKDYVHRVGRTARAGRSGVAVTFVTQYDVEIYQKIERLI 382
Query: 363 GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEM 408
G KL + E +E+ V +++ E + L K EM
Sbjct: 383 GKKL--------------PLFETVENDVMLLVERVEEAQKLAKQEM 414
>gi|297584103|ref|YP_003699883.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
selenitireducens MLS10]
gi|297142560|gb|ADH99317.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens
MLS10]
Length = 528
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 155/402 (38%), Positives = 235/402 (58%), Gaps = 17/402 (4%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E N+S+ L+RA + +G+ P+PIQ IP L G D+ G A TG+GKTAAF +P LE+L
Sbjct: 6 EFNISKSLMRAIKEMGFEAPSPIQEKVIPTILEGNDLIGQAQTGTGKTAAFGIPILEKL- 64
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
KR ++ +ILTPTRELA+QV I+K+++F ++ V GG S Q L+ D
Sbjct: 65 ---KRTKNVQAIILTPTRELAIQVAGEIQKLSKFQKVQTLPVYGGQSIGQQIKQLKRGVD 121
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IVV TPGR++DH+ N ++DL + +LDEAD +L++GF +I +++++ + RQT+LF
Sbjct: 122 IVVGTPGRVLDHV-NRKTLDLSKIHTFVLDEADEMLDMGFIEDIEKIIQVSSEERQTLLF 180
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ + +L + P +++ S ++ + ++ E N+ L L
Sbjct: 181 SATMPPPIRKLSNKYMNSPEQVTISKSEVTAPSINQVYYKVL---EKNKLDSLCRLIDSE 237
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
T IIF TK+ L +A LHG+LTQ+QR ++ FR +DFLIATD
Sbjct: 238 NTDLGIIFCRTKKGVSELAEALQARGYRADGLHGDLTQSQRDSVMKKFRDSSIDFLIATD 297
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARG+D+ V V+NY P+D SYVHR+GRT RAGREG A+T VT + L++I
Sbjct: 298 VAARGIDVQNVTHVVNYDIPQDPESYVHRIGRTGRAGREGIALTLVTPREMKHLRSIENE 357
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMED----QVAAILQEERE 399
K+ S Q++ ++IE+ +D QV +++ + E
Sbjct: 358 IKMKIPS-----QNLPSVEEVIEKQQDVWKSQVIDMIENDDE 394
>gi|302036818|ref|YP_003797140.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
gi|190343232|gb|ACE75620.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
gi|300604882|emb|CBK41215.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
Length = 431
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 156/362 (43%), Positives = 220/362 (60%), Gaps = 7/362 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
L +S LLR G+++PT IQA IP AL GRD+ G A TG+GKTAAF +P LERL
Sbjct: 11 SLGVSPTLLRNLTKAGFAEPTAIQAQAIPHALAGRDVLGCAQTGTGKTAAFVIPMLERLS 70
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
PK P R LIL PTRELA+Q+ + I+ + + + VVGG + Q LR PD
Sbjct: 71 GTPKGQP--RALILAPTRELAIQIQATIDTLGRDLQLFATTVVGGADMQAQVRGLRQRPD 128
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DH+ N ++ L +++L+LDEADR+L++GF+ +I++++ P+ RQT+LF
Sbjct: 129 IIVATPGRLLDHMWNG-TISLLAMSILVLDEADRMLDMGFAQQINQILDAMPEERQTLLF 187
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ D+ L + S+ P+R+ SA +T+ V R + +L+SL ++
Sbjct: 188 SATMPNDLARLAQASVKDPVRVMVTKSATTADGVTQAVHHTTHDR---KNGLLMSLL-QS 243
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ V++F+ TK A RL L A + A LHG T QR ALE FR+ L+ATD
Sbjct: 244 ESDTVLVFARTKHRADRLGNLLDSAGHRVAVLHGGRTLPQRRAALEGFRRGTYRVLVATD 303
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARG+D+ + VINY P YVHR+GRTAR G A TFVT D+ L+AI +
Sbjct: 304 IAARGIDVANIAHVINYDVPNCPEDYVHRIGRTARMRTTGRATTFVTSEDQEQLRAIERL 363
Query: 362 AG 363
G
Sbjct: 364 LG 365
>gi|312070907|ref|XP_003138363.1| hypothetical protein LOAG_02778 [Loa loa]
Length = 463
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 143/329 (43%), Positives = 207/329 (62%), Gaps = 7/329 (2%)
Query: 106 GLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI 165
GL K QE ALR PDIV+ATPGR+IDHL N+ + L ++ +L+LDEADR+L+ F+ ++
Sbjct: 28 GLDLKTQEAALRQRPDIVIATPGRLIDHLHNAPNFSLVNVEILVLDEADRMLDEAFADQM 87
Query: 166 HELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRM 225
E++ LC + RQTMLFSAT+T+ V+EL +SL P++L + + L +E VRIR
Sbjct: 88 KEIIHLCAQNRQTMLFSATMTDQVEELAAVSLKNPVKLFITGNTETALNLRQEFVRIRES 147
Query: 226 REVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEA 285
E ++E ++ L ++ F IIF TK+ RL I+ GL +K +LH LTQ QR+EA
Sbjct: 148 HETDRECIVAGLVTRNFPDHTIIFVKTKRTCRRLHIVLGLLGVKVGQLHSGLTQRQRVEA 207
Query: 286 LELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT 345
L F+K +D L++TD+AARGLD+ GV+TVIN P L YVHRVGRTARAGR G +++
Sbjct: 208 LFRFKKAELDVLVSTDLAARGLDVEGVKTVINMDMPSTLKQYVHRVGRTARAGRVGRSIS 267
Query: 346 FVTDNDRSLLKAI--AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERIL 403
V +++R +LK I + + G LK R+++ + + IE +E+ + I QEE ER L
Sbjct: 268 LVGESERKILKEIIASNKGGGCLKQRLISANVVEAYKNRIESLEESIERIRQEEEVERTL 327
Query: 404 RKAEMEATKAENMIAHKEEIFARPKRTWF 432
R A+ E + + + E KR W
Sbjct: 328 RLAQEELQRGKTKLEGNVE-----KRCWI 351
>gi|156362250|ref|XP_001625693.1| predicted protein [Nematostella vectensis]
gi|156212537|gb|EDO33593.1| predicted protein [Nematostella vectensis]
Length = 446
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 152/375 (40%), Positives = 216/375 (57%), Gaps = 8/375 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L + L AC+ LG+ P+ IQ IP+AL G+D+ G A TGSGKT AFALP L+ LL
Sbjct: 19 LGVVDALCEACKQLGWKTPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILQALLD 78
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P+R+ A LILTPTRELA Q+ E + ++C ++VGG+ Q L P I
Sbjct: 79 NPQRLFA---LILTPTRELAFQISEQCEALGSGIGVKCAVIVGGIDMMSQALMLAKKPHI 135
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR+IDHL N+ L L L++DEADR+L + F E+ +L+++ PK R+T LFS
Sbjct: 136 IIATPGRLIDHLENTKGFSLRTLKYLVMDEADRILNMDFEKEVDKLLKVIPKERRTFLFS 195
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSKT 241
AT+T+ V +L + SL P+++ + L + + I + ++ VL L +
Sbjct: 196 ATMTKKVQKLQRASLQAPVKVEVATKYQTVEKLQQSYLFIPSKFKDCYLVYVLNELAGNS 255
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F ++F GT R+ ++ L A LHG ++Q++RL AL F+ + L+ATD
Sbjct: 256 F----MVFCGTCNNVQRVTLMLRNLGLDAVPLHGQMSQSKRLGALNKFKSKSRSILVATD 311
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V VIN+ P Y+HRVGRTARAGR G +VTFVT D L + I
Sbjct: 312 VASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGRSVTFVTQYDVELYQRIEHL 371
Query: 362 AGSKLKSRIVAEQSI 376
KL E+ +
Sbjct: 372 IAKKLPQYPTVEEEV 386
>gi|409407327|ref|ZP_11255778.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
gi|386433078|gb|EIJ45904.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
Length = 487
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 149/366 (40%), Positives = 221/366 (60%), Gaps = 13/366 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ LS +L+A GY PTPIQA IP+ L GRD+ G+A TG+GKTA F+LP ++RLL
Sbjct: 20 DFGLSPDILKALSEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQRLL 79
Query: 62 YR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
P R P +R LILTPTRELA QV ++ ++FT +R +V GG+ Q
Sbjct: 80 AHASHSASPARHP-VRALILTPTRELADQVAENVKAYSRFTPLRSTVVFGGVDMAPQTAT 138
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR+ +IV+ATPGR++DH++ +V+L +L++DEADR+L++GF ++ ++ L PK+
Sbjct: 139 LRAGVEIVIATPGRLLDHVQQK-TVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQ 197
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVR-IRRMREVNQEAVL 234
RQ +LFSAT + ++ +L P+ + R + E V + I ++ E + +
Sbjct: 198 RQNLLFSATFSPEIKKLAASFQNNPVTIEV----ARSNATAENVSQTIYKVEEAAKADAV 253
Query: 235 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 294
+ + +VI+FS TK A RL +KA+ +HG+ TQ++R+ ALE F++ +
Sbjct: 254 SFIIRQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSERMAALESFKQGQI 313
Query: 295 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 354
+ L+ATDVAARGLDI + VINY P + YVHR+GRT RAG G A++ D D L
Sbjct: 314 EVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDKDERL 373
Query: 355 LKAIAK 360
L I K
Sbjct: 374 LVDIEK 379
>gi|195118551|ref|XP_002003800.1| GI21075 [Drosophila mojavensis]
gi|193914375|gb|EDW13242.1| GI21075 [Drosophila mojavensis]
Length = 515
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 148/366 (40%), Positives = 214/366 (58%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ L +ACE L + P+ IQ IP+AL G+DI G A TGSGKT AFALP L LL
Sbjct: 63 DLGLNETLCKACEELKWKAPSKIQKEAIPVALQGKDIIGLAETGSGKTGAFALPILHALL 122
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A L+LTPTRELA Q+ E + I+CC+VVGG+ Q L P
Sbjct: 123 ENPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 179
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++DHL N +L + L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 180 IIIATPGRLVDHLENLKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 239
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSK 240
SAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 240 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVDQLQQYYIFIPVKYKDVYLVHILNELAGN 299
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T + ++ L A LHG ++Q +RL AL F+ ++ LI+T
Sbjct: 300 SF----MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILIST 355
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+T VT D L + I +
Sbjct: 356 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITMVTQYDIELYQRIEQ 415
Query: 361 RAGSKL 366
G +L
Sbjct: 416 LLGKQL 421
>gi|88801632|ref|ZP_01117160.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
gi|88782290|gb|EAR13467.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
Length = 432
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 149/377 (39%), Positives = 224/377 (59%), Gaps = 15/377 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L LS L++A E GY+KP+PIQ IP L G+DI SA TG+GKTA F LP L+ L+
Sbjct: 5 DLGLSPALVKAVEEKGYTKPSPIQEKAIPHILEGKDILASAQTGTGKTAGFTLPVLQYLV 64
Query: 62 ------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
YRP +R L+LTPTRELA QVH + + +++ DI+ +V GG++ K Q
Sbjct: 65 ETKHPKYRP-----LRALVLTPTRELAAQVHDNVREYSKYVDIKSTVVFGGVNAKPQIAT 119
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LRS DI+VATPGR++D L + ++ + VLILDEADR+L++GF +I++++ P +
Sbjct: 120 LRSGVDILVATPGRLLD-LHDQKALSFKRVEVLILDEADRMLDMGFVRDINKIISFMPAK 178
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQ ++FSAT + D+ +L L P+ + P +T +V ++ + ++ +
Sbjct: 179 RQNLMFSATFSNDIKKLASGILRDPVSVETAPQNSTAKKVTHKVYKVDKNKKTE---FTI 235
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
L + ++V++F+ TK A++L A + AA +HGN +Q R +AL+ F+ +
Sbjct: 236 KLIKEGNWNQVLVFTRTKHGANKLTEKLIKADISAAAIHGNKSQGARTKALKNFKDGSIK 295
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATD+AARGLDI + V+N+ P YVHR+GRT RAG G A++ V +
Sbjct: 296 ILVATDIAARGLDIPLLPHVVNFELPNVPEDYVHRIGRTGRAGAAGEAISLVCSEESEYQ 355
Query: 356 KAIAKRAGSKLKSRIVA 372
I K KLKS IVA
Sbjct: 356 SEIEKLLNEKLKSTIVA 372
>gi|429334948|ref|ZP_19215595.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida CSV86]
gi|428760355|gb|EKX82622.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida CSV86]
Length = 439
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 158/373 (42%), Positives = 227/373 (60%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A AL + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 DFALHERLLKAVAALNFVEPTPVQAAAIPLALQGRDLRVTAKTGSGKTAAFVLPVLNRLV 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
++ IR LIL PTRELA Q IE+ AQFT I+ ++ GG K Q LR +PD
Sbjct: 64 DLNQKRVEIRALILLPTRELAQQTLKEIERFAQFTFIKSGIITGGEDFKEQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+V TPGRM++HL N+ ++DL+ + V++LDEADR+L++GF+ ++ L LCP R QT+LF
Sbjct: 124 ILVGTPGRMLEHL-NAGNLDLEHVQVVVLDEADRMLDMGFAEDVERLCGLCPNRAQTLLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + ++I L P L + ++ T ++++ + Q A L L ++
Sbjct: 183 SATTGGAGLRDMIGKVLKDPEHLMLNAVSQLNETTRQQIITADHNQHKEQIAQWL-LANE 241
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
T+ K IIF+ T+ A R+ +KA LHG+ Q R A+E F+ + L+AT
Sbjct: 242 TY-EKAIIFTNTRVMADRIYGHLVAKDVKAFVLHGDKDQKDRKLAIERFKTGNAKVLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G AV+ + D +L+ +I +
Sbjct: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGADGLAVSLICHGDWNLMSSIER 360
Query: 361 RAGSKLKSRIVAE 373
+ R++ E
Sbjct: 361 YLKQSFERRVIKE 373
>gi|407775962|ref|ZP_11123253.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Thalassospira profundimaris WP0211]
gi|407281034|gb|EKF06599.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Thalassospira profundimaris WP0211]
Length = 605
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 146/361 (40%), Positives = 214/361 (59%), Gaps = 6/361 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L+ P+LRA GY PTPIQA IP L G+D+ G A TG+GKTAAFALP L+RL
Sbjct: 6 ELGLAEPVLRALAQEGYDAPTPIQAQSIPSLLDGKDLLGIAQTGTGKTAAFALPILDRLS 65
Query: 62 YRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
R P A RVL+L PTRELA Q+ +F ++R +VVGG++ Q A+
Sbjct: 66 KSQTRTPKGACRVLVLAPTRELAAQIGESFRAYGRFLNVRTAVVVGGVAPGPQIKAITPG 125
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
+++VATPGR++DH+ +S + L + V++LDEAD +L+LGF I ++++ P+ RQ +
Sbjct: 126 VEVLVATPGRLLDHV-DSGKLSLKHVEVVVLDEADHMLDLGFLPPIKRIIKMLPRDRQNL 184
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
FSAT+ + +L L+ P+++S P A + + V I R R + +L L
Sbjct: 185 FFSATMPTQIGQLAGDMLSDPVKVSVTPVATTQERVEQSVYLIERTR---KRQLLAELLD 241
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+ ++F+ TK+ A R+ + AA +HGN +Q QR AL F+ ++ L+A
Sbjct: 242 NPAFKRTLVFTRTKRGADRVARHLEANKISAAAIHGNKSQNQRERALNAFKDGQINVLVA 301
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TD+AARG+D+ V V+N+ P SYVHR+GRTAR G G A+ F + +R LL+ I
Sbjct: 302 TDIAARGIDVDSVTHVVNFELPNVPESYVHRIGRTARGGASGSAIAFCDEEERGLLRDIE 361
Query: 360 K 360
K
Sbjct: 362 K 362
>gi|367001072|ref|XP_003685271.1| hypothetical protein TPHA_0D01990 [Tetrapisispora phaffii CBS 4417]
gi|357523569|emb|CCE62837.1| hypothetical protein TPHA_0D01990 [Tetrapisispora phaffii CBS 4417]
Length = 498
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 155/401 (38%), Positives = 226/401 (56%), Gaps = 7/401 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL+L L++AC L +SKPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L +L
Sbjct: 79 ELDLVPELIQACHNLNFSKPTPIQSKSIPPALEGHDIIGLAQTGSGKTAAFAIPILNKLW 138
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ A IL PTRELA Q+ + + +R +VGG++ Q L P
Sbjct: 139 EDQQPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSVCIVGGMNMMDQSRELMRKPH 195
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR-RQTML 180
I++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R T L
Sbjct: 196 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQDRTTYL 255
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T +++L + SLT P++ + + TL + ++ + + L+ L ++
Sbjct: 256 FSATMTSKIEKLQRASLTNPVKCAVSNKYQTVETLVQTLMVVPGGL---KNTYLIYLLNE 312
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+I+F+ TK A RL L L + LHG+L Q QR AL+LF+ L+A
Sbjct: 313 FIGKSIIVFTRTKANAERLSALSNLLEFSSTALHGDLNQNQRTGALDLFKAGKRQILVAI 372
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V VINY P D SY+HRVGRTARAGR G +++ V+ D L+ I
Sbjct: 373 DVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIED 432
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 401
G KL V + +I + +++ +V + +E+
Sbjct: 433 VLGKKLPKENVDKNTIMMFRDSVDKANGEVVMEMNRRNKEK 473
>gi|226228176|ref|YP_002762282.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27]
gi|226091367|dbj|BAH39812.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27]
Length = 374
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 151/365 (41%), Positives = 224/365 (61%), Gaps = 7/365 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+RPLL A GY +PTPIQ IPLAL GRD+ G A TG+GKTA+F LP + RLL
Sbjct: 5 DLGLARPLLDALHDAGYERPTPIQREAIPLALLGRDLIGLAQTGTGKTASFTLPVVHRLL 64
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R RVL+LTPTREL +QV + K + + + V GG+ + QE ALR D
Sbjct: 65 GGPRRT---RVLVLTPTRELCLQVEESVRKYSSRSPVDVIPVYGGVGYEPQEKALRRGVD 121
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+VVATPGR++DHL +VD L L+LDEADR+L++GF+ +I+ +V P+ RQT+LF
Sbjct: 122 VVVATPGRLLDHLEKR-NVDFTYLETLVLDEADRMLDMGFAPQINRIVDQIPRYRQTLLF 180
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ +V+ L + L KP+ + + +T+T V + R R + +L+ L + +
Sbjct: 181 SATMPPEVEALGRKYLRKPVVVQVGRRSSAATTVTHAVYPVPRHR---KNELLVHLLTNS 237
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
V++F+ TK A R+ A + A +H + +Q +R++ALE F+ + L+ATD
Sbjct: 238 DHESVLVFTRTKSGADRVVSDLAQAKIHAGAMHADKSQRERIQALEDFKSGKLRVLVATD 297
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+A RGLDI G+ VIN+ P+ YVHR+GRT RA G A TF++ + +++ I +
Sbjct: 298 IAQRGLDISGITHVINFDVPQQPEDYVHRIGRTGRAASTGDAYTFMSAEEIGMVRTIERT 357
Query: 362 AGSKL 366
G ++
Sbjct: 358 IGQEI 362
>gi|315606927|ref|ZP_07881933.1| ATP-dependent RNA helicase RhlE [Prevotella buccae ATCC 33574]
gi|315251308|gb|EFU31291.1| ATP-dependent RNA helicase RhlE [Prevotella buccae ATCC 33574]
Length = 375
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 149/367 (40%), Positives = 223/367 (60%), Gaps = 6/367 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELN+S+P+L+A E Y PTPIQ IP+ L GRD+ G A TG+GKTAAFA+P +++L
Sbjct: 5 ELNISKPILKALELKEYETPTPIQQKAIPIGLEGRDLLGIAQTGTGKTAAFAIPIIQQLA 64
Query: 62 YRP--KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
R I+ LILTPTRELA+Q+ + ++FT +RCC++ GG+S Q L
Sbjct: 65 KSADDNRRRDIKALILTPTRELAIQIEECFKDYSKFTRLRCCVIFGGVSQNGQVKELERG 124
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
DI++ATPGR++D + + + L+ + +LDEADR+L++GF +I +L+ L PKRRQT+
Sbjct: 125 VDILIATPGRLLDLISQHI-ITLEHIRHFVLDEADRMLDMGFIHDIKKLIPLLPKRRQTL 183
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
LFSAT+ E + +L K L KP R+ P + T+ + + + + ++ + +L+S+
Sbjct: 184 LFSATMPETIAKLSKSLLYKPARVEVAPVSSVVDTIEQRLYFVEKPQKTD---LLVSVLK 240
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
++FS TK A R+ ++ +HGN +Q R AL F+ ++A
Sbjct: 241 NDGNRSALVFSRTKHGADRIARKLKARHIECEAIHGNKSQNARQRALTNFKSGKTRVIVA 300
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TD+AARG+DI +Q VINY P +YVHR+GRT RAG G A+TF T +R +++ I
Sbjct: 301 TDIAARGIDIANLQMVINYDLPDVAETYVHRIGRTGRAGNSGVALTFCTQEERPMVRDIQ 360
Query: 360 KRAGSKL 366
K G KL
Sbjct: 361 KLTGKKL 367
>gi|395333626|gb|EJF66003.1| DEAD-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 461
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 153/353 (43%), Positives = 207/353 (58%), Gaps = 6/353 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L PLL A E + Y PT IQA +P AL GRDI G A TGSGKTAAFALP L++L
Sbjct: 28 LGLIDPLLEALEQMKYKAPTDIQAEALPHALQGRDIIGVASTGSGKTAAFALPILQKLWE 87
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
PK + A ++ PTRELA Q+ E I +RC ++GG+ + Q+ AL P +
Sbjct: 88 DPKGLFAC---VIAPTRELAFQITQQFESIGSAMGVRCATIIGGVDIQSQKIALAKKPHV 144
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+VATPGR+++HL + L L L+LDEADRLL++ F + ++++L PK R T LFS
Sbjct: 145 IVATPGRLLEHLEETKGFSLRSLKFLVLDEADRLLDMDFGPILDKILKLIPKERTTYLFS 204
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T V +L + SL+ P+R+ + STL + + M ++ L+ L +
Sbjct: 205 ATMTTKVAKLQRASLSNPVRVEVNSKYSTVSTLLQYYL---LMPLPQKDVHLIYLANTLA 261
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+ +IIF+ T A RL I+ A LHG L+Q+ RL AL F+ L+ATDV
Sbjct: 262 QNSMIIFTRTVHDAQRLSIMLRSLGFPAIPLHGQLSQSARLGALGKFKAGGRSILVATDV 321
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
A+RGLDI V VINY P Y+HRVGRTARAGR G ++T VT D L+
Sbjct: 322 ASRGLDIPSVDIVINYDIPTHSKDYIHRVGRTARAGRSGKSITLVTQYDVELV 374
>gi|158298749|ref|XP_318913.4| AGAP009808-PA [Anopheles gambiae str. PEST]
gi|157014035|gb|EAA14161.4| AGAP009808-PA [Anopheles gambiae str. PEST]
Length = 510
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 152/366 (41%), Positives = 210/366 (57%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L L AC L + P+ IQ IPLAL G+DI G A TGSGKT AFALP L+ LL
Sbjct: 60 DLGLIDTLCTACRGLKWKAPSKIQREAIPLALQGKDIIGLAETGSGKTGAFALPILQALL 119
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A+ +LTPTRELA Q+ E + ++CC++VGG+ Q L P
Sbjct: 120 DNPQRYFAV---VLTPTRELAYQISEQFEALGATIGVKCCVIVGGMDLVTQAIQLARKPH 176
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++DHL N+ L + L++DEADR+L + F E+++++++ P+ R+T LF
Sbjct: 177 IIIATPGRLVDHLENTKGFSLKAIRYLVMDEADRILNMDFEEEVNKILKVMPRERRTFLF 236
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + SL P+++ + L + + I R + V VL L
Sbjct: 237 SATMTKKVKKLERASLRDPVKVEVSSKYQTVEKLLQYYLFIPARYKNVYLVHVLNELAGN 296
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R ++ L A LHG +TQ +RL AL F+ Q LI+T
Sbjct: 297 SF----MIFCSTCNNTVRTALMLRALGLAAVPLHGQMTQNKRLAALNKFKSQARQILIST 352
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 353 DVASRGLDIPHVDVVLNLDIPMHSKDYIHRVGRTARAGRAGQAITFVTQYDVELYQRIEH 412
Query: 361 RAGSKL 366
G KL
Sbjct: 413 LLGKKL 418
>gi|335420259|ref|ZP_08551297.1| DEAD box family ATP-dependent RNA helicase [Salinisphaera
shabanensis E1L3A]
gi|334894618|gb|EGM32803.1| DEAD box family ATP-dependent RNA helicase [Salinisphaera
shabanensis E1L3A]
Length = 437
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 153/370 (41%), Positives = 224/370 (60%), Gaps = 6/370 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ LL A A GYS+PTPIQA IP L G+D+ +A TG+GKTAAF LP L +L
Sbjct: 5 QLGLAPSLLEAVAAAGYSEPTPIQAKAIPAVLDGQDVLAAAQTGTGKTAAFTLPLLHKLG 64
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
R ++ P RVL+L PTRELA QV+ + + IR ++ GG+ + Q + D
Sbjct: 65 DRQEKKP--RVLVLAPTRELAAQVNESVRTYGKSGAIRSTVIFGGVGYQPQIAQFKKGVD 122
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IVVATPGR++D L+ + DL ++ L+LDEADR+L++GF +I +++ P++RQT+LF
Sbjct: 123 IVVATPGRLLDLLQEGHA-DLSNIQTLVLDEADRMLDMGFIHDIKRVLKYVPEKRQTLLF 181
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++D+ +L L KP+ + P + ++VV + + R + AVL L +
Sbjct: 182 SATFSKDIRKLASSLLHKPVEIDVAPRNATADRIDQKVVMVEKPR---KRAVLSHLIKEN 238
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++F+ TK A+RL L +A LHGN +Q R +ALE F+ + L+ATD
Sbjct: 239 GWHQVLVFARTKHGANRLCKQLESDGLPSAALHGNKSQNARTKALEGFKDGKIQVLVATD 298
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARG+DI + V+NY P YVHR+GRT RAG G AV+ V ++R LLK I K
Sbjct: 299 IAARGIDIESLPHVVNYELPNVSEDYVHRIGRTGRAGEAGEAVSLVGPDERKLLKDIEKL 358
Query: 362 AGSKLKSRIV 371
G +++ V
Sbjct: 359 IGKQIERMTV 368
>gi|398835789|ref|ZP_10593146.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. YR522]
gi|398215227|gb|EJN01792.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. YR522]
Length = 487
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 218/365 (59%), Gaps = 11/365 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ LS +LRA GY PTPIQA IP+ L GRD+ G+A TG+GKTA F+LP ++ LL
Sbjct: 20 DFGLSPDILRALTEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQLLL 79
Query: 62 YR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
P R P +R LILTPTRELA QV ++ ++FT +R +V GG+ Q
Sbjct: 80 AHASTSASPARHP-VRALILTPTRELADQVADNVKAYSRFTPLRSTVVFGGVDMAPQTAT 138
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR+ +IV+ATPGR++DH++ +V+L +L++DEADR+L++GF ++ ++ L PK+
Sbjct: 139 LRAGVEIVIATPGRLLDHVQQK-TVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKK 197
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQ ++FSAT + ++ +L P+ + S +T+ + R+ +AV
Sbjct: 198 RQNLMFSATFSPEIKKLAGSFQNNPVTIEVARSNATAERVTQTIYRVDE--SAKADAVSF 255
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
+ + +VI+FS TK A RL +KA+ +HG+ TQ +R+ ALE F++ ++
Sbjct: 256 IIRERNL-KQVIVFSNTKIGASRLSRQLENEGVKASAIHGDKTQNERMAALEAFKQGQIE 314
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARGLDI + VINY P + YVHR+GRT RAG G A++ D D LL
Sbjct: 315 VLVATDVAARGLDITDLPCVINYDMPYNAEDYVHRIGRTGRAGASGDAISLFCDKDERLL 374
Query: 356 KAIAK 360
I K
Sbjct: 375 TDIEK 379
>gi|395538707|ref|XP_003771316.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Sarcophilus harrisii]
Length = 460
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 148/376 (39%), Positives = 216/376 (57%), Gaps = 8/376 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG+ PT IQ IP+AL GRDI G A TGSGKT AFALP L LL
Sbjct: 29 DLGVTEVLCDACDQLGWKTPTKIQIEAIPMALEGRDIIGLAETGSGKTGAFALPILNALL 88
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A L+LTPTRELA Q+ E + + C ++VGG+ + Q AL P
Sbjct: 89 ETPQRFFA---LVLTPTRELAFQISEQFEALGSSIGVECAVIVGGIDSMSQSLALAKKPH 145
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ ++++L P+ R+T LF
Sbjct: 146 VIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKLIPRDRKTFLF 205
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 206 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDSYLVYILNELAGN 265
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F ++F T R +L A LHG ++Q +RL +L F+ + L+AT
Sbjct: 266 SF----MVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLAT 321
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G ++TFVT D L + I
Sbjct: 322 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELYQRIEH 381
Query: 361 RAGSKLKSRIVAEQSI 376
G KL + E+ +
Sbjct: 382 LIGKKLPAFPTQEEEV 397
>gi|170583206|ref|XP_001896476.1| ATP-dependent RNA helicase T26G10.1 in chromosome III [Brugia
malayi]
gi|158596304|gb|EDP34674.1| ATP-dependent RNA helicase T26G10.1 in chromosome III, putative
[Brugia malayi]
Length = 462
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 155/406 (38%), Positives = 229/406 (56%), Gaps = 20/406 (4%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L ++ L AC+ L + KPT +Q A +P A RDI G A TGSGKTAAFA+P L+ LL
Sbjct: 29 LGVTDVLCEACDRLNWKKPTKVQIAALPHAFKKRDIIGLAETGSGKTAAFAIPILQALLE 88
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P+++ A L+LTPTRELA Q+ E + I ++VGG+ T Q AL P +
Sbjct: 89 TPQKLFA---LVLTPTRELAFQIGEQFEALGASIGILIAVIVGGVDTVTQSLALAKRPHV 145
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+VATPGR++DHL N+ +L L L++DEADR+L + F E+ +++++ PK R+T L+S
Sbjct: 146 IVATPGRLVDHLENTKGFNLRALKYLVMDEADRILNMDFEVELEKILKVIPKERRTYLYS 205
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T+ V +L + SL P+R+ + L + + I +EA L+ + ++
Sbjct: 206 ATMTKKVAKLERASLNDPVRIEVSSKYQTVDKLKQYYIFIPYKY---KEAYLIYILNEMA 262
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
I+F T +A + ++ A LHG ++QA+RL +L F+ + L+ TDV
Sbjct: 263 GQTAIVFCSTCASALKTALMLRKLGFGAVPLHGQMSQAKRLGSLNKFKSKASTVLVCTDV 322
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI V V+NY P YVHRVGRTARAGR G A+TFVT D + + I +
Sbjct: 323 ASRGLDIPHVDIVLNYDVPTQSKDYVHRVGRTARAGRSGVAITFVTQYDVEIYQKIERLI 382
Query: 363 GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEM 408
G KL + E +E+ V +++ E + L K EM
Sbjct: 383 GKKL--------------PLFETVENDVMLLVERVEEAQKLAKQEM 414
>gi|383854018|ref|XP_003702519.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Megachile rotundata]
Length = 453
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 214/366 (58%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L +ACE L + PT IQ IPL L G+DI G A TGSGKTAAFALP L+ LL
Sbjct: 22 DLGIVDVLCKACEDLKWKSPTKIQRESIPLTLQGKDIIGLAETGSGKTAAFALPILQALL 81
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A LILTPTRELA Q+ E + ++C ++VGG+ Q L P
Sbjct: 82 ENPQRYFA---LILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMMSQALILAKKPH 138
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++R+ P+ R+T+LF
Sbjct: 139 ILIATPGRLIDHLENTKGFNLRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERRTLLF 198
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSK 240
SAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 199 SATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGN 258
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q +R+ AL F+ ++ LI+T
Sbjct: 259 SF----MIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSILIST 314
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++TFVT D L + I +
Sbjct: 315 DVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQ 374
Query: 361 RAGSKL 366
+L
Sbjct: 375 LISKQL 380
>gi|336172862|ref|YP_004580000.1| DEAD/DEAH box helicase [Lacinutrix sp. 5H-3-7-4]
gi|334727434|gb|AEH01572.1| DEAD/DEAH box helicase domain protein [Lacinutrix sp. 5H-3-7-4]
Length = 444
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 145/371 (39%), Positives = 228/371 (61%), Gaps = 5/371 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L LS PLL+A GY P+PIQA IP L G D+ SA TG+GKTA F LP L L
Sbjct: 5 QLGLSEPLLKAISKKGYENPSPIQAKAIPPVLDGYDVLASAQTGTGKTAGFTLPLLHILS 64
Query: 62 YRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
PK + IR L+LTPTRELA QV++ +++ ++F ++R ++ GG++ K Q +R
Sbjct: 65 ENPKEKFRPIRALVLTPTRELAAQVYANVKEYSEFLNLRSVVIFGGVNQKPQVANIRKGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D++VATPGR+ID L N + L + + +LDEADR+L++GF +I +++L P +RQ ++
Sbjct: 125 DVLVATPGRLID-LNNQGLLSLKRVEIFVLDEADRMLDMGFLRDIERVMKLMPDKRQNLM 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++D+ +L L P+++ A P ++++V R+ + + +++ L S
Sbjct: 184 FSATFSKDIKKLAFNILKNPVQVEATPENTAVEAISQKVYRVAKGLKT---GLVIKLISD 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++F+ TK A++L + + AA +HGN +Q R +AL+ F+ + ++AT
Sbjct: 241 GNWKQVLVFTRTKHGANKLTKKMISSGITAAAIHGNKSQGARTKALKGFKDGTIRVMVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARGLDI + VIN+ P YVHR+GRT RAG +G A++ V+ ++ L+ I K
Sbjct: 301 DIAARGLDIPLLPHVINFEIPNISEDYVHRIGRTGRAGAKGEAISLVSADETQYLRDIEK 360
Query: 361 RAGSKLKSRIV 371
G KLK I+
Sbjct: 361 LIGEKLKVEIL 371
>gi|161784286|sp|Q5ACU6.2|RRP3_CANAL RecName: Full=ATP-dependent rRNA helicase RRP3
Length = 539
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 143/365 (39%), Positives = 216/365 (59%), Gaps = 6/365 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNL LL + E++ ++KPTPIQ+ IP AL G+DI G A TGSGKTAAFA+P L+ L
Sbjct: 127 ELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLW 186
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + A L+L PTREL Q+ + + +R +VGG+ Q L P
Sbjct: 187 HAQQPYFA---LVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPH 243
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++DHL ++ L +L L++DEADRLL++ F + +++++ P +R T LF
Sbjct: 244 VIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTTYLF 303
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T +++L + SL P+R++ + L + ++ + + + +L+ L ++
Sbjct: 304 SATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVN---DGYKNTILIHLLNEF 360
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+I+F+ T A R +L + A LHG L+Q+QRL +L F+ + L+ATD
Sbjct: 361 MGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATD 420
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V VINY P D +Y+HRVGRTARAGR G +++ +T D + I
Sbjct: 421 VAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRIESV 480
Query: 362 AGSKL 366
G KL
Sbjct: 481 LGKKL 485
>gi|363750628|ref|XP_003645531.1| hypothetical protein Ecym_3217 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889165|gb|AET38714.1| Hypothetical protein Ecym_3217 [Eremothecium cymbalariae
DBVPG#7215]
Length = 486
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 157/401 (39%), Positives = 225/401 (56%), Gaps = 7/401 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L++ L+ ACE L ++KPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L +L
Sbjct: 70 DLDIVPELIEACENLKFTKPTPIQSKAIPPALQGNDIIGLAQTGSGKTAAFAIPILNQLW 129
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + A IL PTRELA Q+ + + +R ++GG++ Q L P
Sbjct: 130 HDQQPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSTCIMGGMNMMDQARDLMRKPH 186
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQTML 180
I++ATPGR++DHL N+ L L L++DEADRLL++ F A + +++ P K R T L
Sbjct: 187 IIIATPGRLMDHLENTKGFSLRKLRFLVIDEADRLLDMEFGAVLDRILKNIPTKGRTTYL 246
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T +D+L + SLT P++ S + TL + ++ + + L+ L ++
Sbjct: 247 FSATMTSKIDKLQRASLTNPVKCSVSNKYQTVDTLIQTLMVVPGGL---KNTYLIYLLNE 303
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
I+F+ TK A R+ L L A LHG+L Q QR AL+LF+ L+AT
Sbjct: 304 FIGKSTIVFTRTKANAERISGLCNLLEFSATALHGDLNQNQRTGALDLFKAGRRSILVAT 363
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V VINY P D SY+HRVGRTARAGR G +++ V+ D L+ I
Sbjct: 364 DVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIED 423
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 401
G KL + + I +++ +V L +E+
Sbjct: 424 VLGKKLPKEDINKNMILSLRDSVDKANGEVVMELNRRNKEK 464
>gi|254442945|ref|ZP_05056421.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
DG1235]
gi|198257253|gb|EDY81561.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
DG1235]
Length = 436
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 153/368 (41%), Positives = 226/368 (61%), Gaps = 8/368 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+LS LLR+ E LGY + TPIQAA IP+ L G D+ +A TGSGKTAAF+LP +ERL
Sbjct: 6 LSLSDFLLRSLETLGYEEATPIQAAAIPVVLKGSDLLAAAQTGSGKTAAFSLPIIERLAG 65
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD--IRCCLVVGGLSTKMQETALRSMP 120
++ R L+L PTRELAVQV + IE+ A+ R + GG+ Q A +
Sbjct: 66 MEEQKAKPRFLVLVPTRELAVQVGAAIERYAEGAPRKARVLVAFGGVGYDAQMKAAYAGV 125
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
++VVATPGR+ID L SV LD++ +L+LDEADRLL LGF+ E++ ++ + P+ RQ +L
Sbjct: 126 EVVVATPGRLID-LAERRSVVLDEVEMLVLDEADRLLALGFAEELNTILEMLPEGRQNLL 184
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL-SLCS 239
FSAT ++V L L P+++ + +++ ++ + + + + N LL L
Sbjct: 185 FSATFPQNVVSLANALLKDPVKIELEAASRPVESIAQRAIEV----DGNSRTGLLRHLLE 240
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+V++F G+K+ A + + +KA LHGN++Q +R +LE F++ V L+A
Sbjct: 241 TEGWERVLVFVGSKRRAENVTVKLQKHGIKAVALHGNMSQDKRARSLERFKQSKVRVLMA 300
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVAARG+DI G+ V+NY PR YVHR+GRT RAG G AV F+TD+ + + I
Sbjct: 301 TDVAARGIDIAGLPCVVNYDLPRSAADYVHRIGRTGRAGESGLAVNFITDDKDAHFRLIE 360
Query: 360 KRAGSKLK 367
K+ G +L+
Sbjct: 361 KKNGLRLE 368
>gi|405964769|gb|EKC30218.1| Putative ATP-dependent RNA helicase DDX47 [Crassostrea gigas]
Length = 1146
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 149/359 (41%), Positives = 211/359 (58%), Gaps = 8/359 (2%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 68
L ACE L + PT IQ IP+AL G D+ G A TGSGKT AFALP L+ LL +P+R+
Sbjct: 50 LCEACEQLKWKTPTKIQKEAIPVALQGSDVIGLAETGSGKTGAFALPILQTLLDKPQRLY 109
Query: 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 128
A L+LTPTRELA Q+ E + I+C ++VGG+ Q L P IV+ATPG
Sbjct: 110 A---LVLTPTRELAFQISEQFEALGASIGIKCAVIVGGIDMMTQSLMLAKKPHIVIATPG 166
Query: 129 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 188
R++DHL N+ +L L L++DEADR+L + F E+ ++++ P+ R T+LFSAT+T+
Sbjct: 167 RLVDHLENTKGFNLRSLKYLVMDEADRILNMDFEQEVDKILKAIPRERNTLLFSATMTKK 226
Query: 189 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSKTFTSKVI 247
V +L + SL P+R+ + L + + I + ++V +L L +F +
Sbjct: 227 VAKLQRASLQNPVRVEVSSKYQTVDKLQQYYLFIPVKFKDVYLVYILNELAGNSF----M 282
Query: 248 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 307
+F T R+ ++ L A LHG ++Q++RL AL F+ ++ LIATDVA+RGL
Sbjct: 283 VFCSTCANTQRVALMLRNLGLTAIPLHGQMSQSKRLGALNKFKSKNRSILIATDVASRGL 342
Query: 308 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 366
DI V V+N P Y+HRVGRTARAGR G A+TFV+ D L + I G KL
Sbjct: 343 DIPHVDVVLNLDIPTHSKDYIHRVGRTARAGRSGVAITFVSQYDVELYQRIEHLIGKKL 401
>gi|332293596|ref|YP_004432205.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
gi|332171682|gb|AEE20937.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
Length = 427
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 145/370 (39%), Positives = 221/370 (59%), Gaps = 5/370 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS LL+A GY+ P+PIQ IP+ L G+D+ SA TG+GKTA F LP + RL+
Sbjct: 6 LGLSDALLKAVSEKGYTTPSPIQQKAIPVVLQGKDVLASAQTGTGKTAGFTLPMIHRLIN 65
Query: 63 RPKRIP-AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
PK+ IR L+LTPTRELA Q+ + + +++ DI+ ++ GG++ Q LR D
Sbjct: 66 NPKQGRRKIRALVLTPTRELAAQIQENVLEYSKYVDIKSMVIFGGVNQNPQVRTLRQGVD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++D L+N + L D+ L+LDEADR+L++GF +I +++++ P +RQ +LF
Sbjct: 126 ILVATPGRLLD-LQNQGLLSLSDVEFLVLDEADRMLDMGFIHDIKKVLKMVPAKRQNLLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT D+ + LT P+ + A P + ++ R+ + R+ +L+ +
Sbjct: 185 SATFNTDIKKFASSILTNPVLVEATPENTTAEKVDQKSYRVDKSRKTE---MLIKFIREG 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++F+ TK A+RL + +A +HGN TQ R++AL F+ V L+ATD
Sbjct: 242 NWDQVLVFTRTKHGANRLSQKLEKDGISSAAIHGNKTQNARVKALAGFKSGKVRVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARGLDI + VINY P YVHR+GRT RAG G A++ V ++ ++ I K
Sbjct: 302 IAARGLDIPLLPYVINYELPNVPEDYVHRIGRTGRAGASGQAISLVGVDEVDYVRGIEKL 361
Query: 362 AGSKLKSRIV 371
G KL S ++
Sbjct: 362 LGEKLHSEVL 371
>gi|381160579|ref|ZP_09869811.1| DNA/RNA helicase, superfamily II [Thiorhodovibrio sp. 970]
gi|380878643|gb|EIC20735.1| DNA/RNA helicase, superfamily II [Thiorhodovibrio sp. 970]
Length = 438
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 157/375 (41%), Positives = 222/375 (59%), Gaps = 10/375 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L LS LLRA A GY++PTPIQ IP L GRD+ A TG+GKTAAF LP L+RL
Sbjct: 5 DLGLSAKLLRAVTARGYTEPTPIQNQAIPAILAGRDVMAGAQTGTGKTAAFTLPLLQRLS 64
Query: 62 YRPK----RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 117
+ R P R L+LTPTRELA QV + Q+ +R + GG+ Q TALR
Sbjct: 65 QSGQQASARSPQPRALVLTPTRELAAQVGESVSAYGQYLPLRALQIFGGVGMGPQITALR 124
Query: 118 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 177
DI+VATPGR++DH+ ++DL + +L+LDEADR+L++GF I +++L P RRQ
Sbjct: 125 RGVDILVATPGRLLDHV-GQGNLDLGHVELLVLDEADRMLDMGFMPAIRRVLKLLPARRQ 183
Query: 178 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS- 236
+LFSAT + D+++L L PLR+ R +T E V ++ E + LLS
Sbjct: 184 NLLFSATYSRDIEQLATGLLNDPLRIEV----ARRNTAAETVRQLAHPVERGHKRALLSH 239
Query: 237 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 296
L + + ++F+ TK A+RL + AA +HGN +Q+ R AL F++ V
Sbjct: 240 LIASGGWDQTLVFTRTKHGANRLAQQLERDGISAAAIHGNKSQSARTRALADFKRGAVRT 299
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 356
L+ATD+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V+ + SLL
Sbjct: 300 LVATDIAARGLDIERLPHVVNFELPNVAEDYVHRIGRTGRAGESGTAVSLVSPEEGSLLA 359
Query: 357 AIAKRAGSKLKSRIV 371
I + G +++S+ +
Sbjct: 360 GIERLLGRRIESQAI 374
>gi|313146179|ref|ZP_07808372.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
gi|423279249|ref|ZP_17258162.1| hypothetical protein HMPREF1203_02379 [Bacteroides fragilis HMW
610]
gi|313134946|gb|EFR52306.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
gi|404585418|gb|EKA90034.1| hypothetical protein HMPREF1203_02379 [Bacteroides fragilis HMW
610]
Length = 427
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 153/405 (37%), Positives = 231/405 (57%), Gaps = 17/405 (4%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
LNL P+L+A GY+ PTPIQ IP+ L G+D+ G A TG+GKTAAF++P L++L Y
Sbjct: 6 LNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPILQKL-Y 64
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+ I+ L+LTPTRELA+Q+ E ++T ++ ++ GG+ K Q ALR I
Sbjct: 65 KTDHRKGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALRGGIQI 124
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+VATPGR++D + V L+ L +LDEADR+L++GF +I +++L P +RQT+ FS
Sbjct: 125 LVATPGRLLDLISQGF-VSLNSLDFFVLDEADRMLDMGFIHDIKRILKLLPTKRQTLFFS 183
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+ +++ L LTKP ++ P++ ++++V + + ++ +L+ L
Sbjct: 184 ATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKKE---KKDLLIHLLKDAS 240
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
V+IF+ TK A +L + A + A +HGN TQ R AL F+ + LIATD+
Sbjct: 241 IESVLIFTRTKYGADKLARILTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALIATDI 300
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
AARG+D+ + VINY P +YVHR+GRT RAG EG A++F + LK I K
Sbjct: 301 AARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAISFCESEELPYLKDIQKLI 360
Query: 363 GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAE 407
G + +V E A QEE++E I KA+
Sbjct: 361 GKNIP--VVKEHPFVTAE----------GAKAQEEKQEEIKVKAK 393
>gi|406603210|emb|CCH45247.1| ATP-dependent rRNA helicase RRP3 [Wickerhamomyces ciferrii]
Length = 488
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 156/388 (40%), Positives = 219/388 (56%), Gaps = 6/388 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L LL AC+AL + KPTPIQA IP + GRD+ G A TGSGKTAAFA+P L+ L
Sbjct: 78 DLKLIPELLEACQALKFDKPTPIQAEAIPHGIEGRDLIGLAQTGSGKTAAFAIPILQALW 137
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y + P +L PTRELA Q+ + + +R +VGG+ Q L P
Sbjct: 138 Y--AQTPYFAT-VLAPTRELAYQIKDTFDALGSGMGLRSVCIVGGMDMMEQARDLMRKPH 194
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++DHL + L L L++DEADRLL++ F + ++ ++ P+ R T LF
Sbjct: 195 VIVATPGRLMDHLEHLKGFSLRALKFLVMDEADRLLDMEFGPVLDKIFKVIPRERTTYLF 254
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T +D+L + SLT P+++S + R ST+ + + + + + L+ L ++
Sbjct: 255 SATMTNKIDKLQRASLTNPVKVSV---SDRYSTVDTLIQSMMIVPDGQKNTYLIYLLNQF 311
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+IIF+ T + R +L + A LHG LTQ+QRL AL F+ + L+ATD
Sbjct: 312 EGKSIIIFTRTCAHSQRTALLSRILGFSAVPLHGQLTQSQRLSALNRFKSGKTNILVATD 371
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V VINY P D +Y+HRVGRTARAGR G +V+ VT D LL I
Sbjct: 372 VAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGRSGKSVSLVTQYDLELLIRIEAI 431
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQ 389
KL V I +++ Q
Sbjct: 432 INMKLPKESVNRDEILSLHDYVDKATAQ 459
>gi|242222657|ref|XP_002477039.1| predicted protein [Postia placenta Mad-698-R]
gi|220723636|gb|EED77767.1| predicted protein [Postia placenta Mad-698-R]
Length = 389
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 160/365 (43%), Positives = 210/365 (57%), Gaps = 6/365 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L PLL A E L + PT IQ +P AL GRDI G A TGSGKTAAFALP L++L
Sbjct: 24 LGLIDPLLEALEQLNFKIPTEIQVQALPHALQGRDIIGVASTGSGKTAAFALPILQKLWE 83
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
PK + A I+ PTRELA Q+ IE + +RC +VGG+ Q AL P I
Sbjct: 84 EPKGLFAC---IMAPTRELAYQISQQIEALGSAMGVRCVTLVGGMDKMAQAVALAKRPHI 140
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
VVATPGR+ DHL ++ L L L+LDEADRLL++ F I ++++ P+ R T LFS
Sbjct: 141 VVATPGRLNDHLEDTKGFSLRGLKFLVLDEADRLLDMDFGPIIDKILKAIPRERTTYLFS 200
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T V +L + SL+ P+R+ STL + + I V ++ L+ L +
Sbjct: 201 ATMTTKVAKLQRASLSNPVRVEVSEKYSTVSTLLQYYLFIPL---VQKDVHLIYLANILA 257
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+ +IIF+ T A RL I+ A LHG L+Q+ RL AL F+ L+ATDV
Sbjct: 258 QNSIIIFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSARLGALGKFKSGGRKVLVATDV 317
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI V VINY P Y+HRVGRTARAGR G ++T VT D L++ I
Sbjct: 318 ASRGLDIPHVDVVINYDIPTHSKDYIHRVGRTARAGRSGKSITLVTQYDVELIQRIETTI 377
Query: 363 GSKLK 367
G K++
Sbjct: 378 GKKME 382
>gi|84387538|ref|ZP_00990556.1| ATP-dependent RNA helicase RhlE [Vibrio splendidus 12B01]
gi|84377586|gb|EAP94451.1| ATP-dependent RNA helicase RhlE [Vibrio splendidus 12B01]
Length = 531
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 142/346 (41%), Positives = 208/346 (60%), Gaps = 5/346 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A EA GY KP+PIQ +P LTG+D+ +A TG+GKTA F LP LE L
Sbjct: 6 LGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILEMLSK 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ R +R L+LTPTRELA QV+ + K + +V GG+ Q LR D
Sbjct: 66 GPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKLRKGSD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++D L N +V D L +L+LDEADR+L++GF +I +++ PK+RQ +LF
Sbjct: 126 VLVATPGRLLD-LYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQNLLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++D+ L K + P+ +S P+ T+ + + + + + + A+L L
Sbjct: 185 SATFSDDIRGLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKK---KSAMLAKLIKDN 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++FS TK A++L + AA +HGN +Q R +ALE F+ V L+ATD
Sbjct: 242 DWRQVLVFSKTKHGANKLSHFLDEQGISAAPIHGNKSQGARTKALENFKTGKVRVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 347
+AARG+DI + V+N+ P YVHR+GRT RAG G A++ V
Sbjct: 302 IAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLV 347
>gi|390598048|gb|EIN07447.1| DEAD-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 449
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 156/357 (43%), Positives = 211/357 (59%), Gaps = 8/357 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L PLL A + L Y +PT IQ +P AL GRDI G A TGSGKTAAFALP L++L
Sbjct: 19 LGLINPLLEALDQLKYKEPTDIQREALPHALEGRDIIGVASTGSGKTAAFALPILQKLWE 78
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P+ + A +L PTRELA Q+ E + +RC ++VGG+ Q AL P I
Sbjct: 79 EPRGLFAC---VLAPTRELAYQISQQFEALGSAMGVRCAVLVGGMDLIDQAVALAKKPHI 135
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+VATPGR+ HL + L L L+LDEADRLL+L F I +++++ PK R T LFS
Sbjct: 136 IVATPGRLQQHLTETKGFSLRGLKFLVLDEADRLLDLDFGPVIDQILKIIPKERTTYLFS 195
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV-LLSLCSKT 241
AT+T V +L + SL+ P+R+ + STL + + I ++Q+ V L+ L +
Sbjct: 196 ATMTTKVAKLQRASLSNPIRVEVSSKYQTVSTLLQYYLFI----PLSQKDVHLIYLANSL 251
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
++ +IIF+ T A RL I+ + A LHG L+Q+ RL AL F+ L+ATD
Sbjct: 252 ASNSIIIFTRTVHDAQRLSIMLRILGFPAVPLHGQLSQSARLGALAKFKSGGRKVLVATD 311
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
VA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++T VT D L++ I
Sbjct: 312 VASRGLDIPSVDIVINFDIPNHSKDYIHRVGRTARAGRSGKSITLVTQYDVELIQRI 368
>gi|389696462|ref|ZP_10184104.1| DNA/RNA helicase, superfamily II [Microvirga sp. WSM3557]
gi|388585268|gb|EIM25563.1| DNA/RNA helicase, superfamily II [Microvirga sp. WSM3557]
Length = 505
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 157/364 (43%), Positives = 224/364 (61%), Gaps = 12/364 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L++P+L+A A GY KPTPIQA IP A+ GRD+CG A TG+GKTAAFALP L RL
Sbjct: 6 DFGLAQPILKALSAEGYEKPTPIQAQTIPYAMEGRDVCGIAQTGTGKTAAFALPILHRLN 65
Query: 62 YRPK-RIP-AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
PK R P + RVL+L+PTREL+ Q+ + + + +V GG++ QE AL
Sbjct: 66 ANPKPRKPKSPRVLVLSPTRELSGQIADSFKAYGRNLRLSTEVVFGGVTISRQEKALAQG 125
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
D++VATPGR+ID L + ++ L D+ +L+LDEAD++L+LGF + +V L PK RQ++
Sbjct: 126 VDVLVATPGRLID-LVDRRALSLRDIEILVLDEADQMLDLGFIHALKRIVTLLPKDRQSL 184
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL-SLC 238
FSAT+ + + L L P ++ P A + + V+ + + N++ VLL +L
Sbjct: 185 FFSATMPKTISTLADSFLRDPAHVAVTPVATTAERVEQSVIFV----QTNRKQVLLETLL 240
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGL--AALKAAELHGNLTQAQRLEALELFRKQHVDF 296
+V++F+ TK A K++ GL A + A +HGN +Q QR AL FR
Sbjct: 241 RDPSIDRVLVFTRTKHGAD--KVVRGLDKAGIAGAAIHGNKSQPQRERALAGFRDGSCRV 298
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 356
L+ATD+AARG+D+ GV VINY P SYVHR+GRTARAG G A++F D +++ LK
Sbjct: 299 LVATDIAARGIDVEGVTHVINYDLPNVPESYVHRIGRTARAGATGLAISFCNDEEKAYLK 358
Query: 357 AIAK 360
I K
Sbjct: 359 DIEK 362
>gi|300312872|ref|YP_003776964.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
gi|300075657|gb|ADJ65056.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
SmR1]
Length = 487
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 147/365 (40%), Positives = 218/365 (59%), Gaps = 11/365 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ LS +L+A GY PTPIQA IP+ L GRD+ G+A TG+GKTA F+LP ++RLL
Sbjct: 20 DFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQRLL 79
Query: 62 YR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
P R P +R LILTPTRELA QV + +FT +R +V GG+ Q
Sbjct: 80 QHASHSASPARHP-VRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDMAPQTAI 138
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR+ +IV+ATPGR++DH++ +V+L +L++DEADR+L++GF ++ ++ L PK+
Sbjct: 139 LRAGVEIVIATPGRLLDHVQQK-TVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQ 197
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQ +LFSAT + ++ +L P+ + S +T+ + ++ E + +
Sbjct: 198 RQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYKVE---EAAKADAVS 254
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
+ + +VI+FS TK A RL +KA+ +HG+ TQ++R+ ALE F++ ++
Sbjct: 255 FIIRQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSERMAALEAFKQGQIE 314
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARGLDI + VINY P + YVHR+GRT RAG G A++ D D LL
Sbjct: 315 VLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDKDDRLL 374
Query: 356 KAIAK 360
I K
Sbjct: 375 TDIEK 379
>gi|307178385|gb|EFN67130.1| Probable ATP-dependent RNA helicase DDX47 [Camponotus floridanus]
Length = 435
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 213/365 (58%), Gaps = 8/365 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L L C L +++PT IQ IPL L G+D+ G A TGSGKTAAFALP L+ LL
Sbjct: 7 LGLVDTLCTTCIQLKWNEPTKIQREAIPLVLEGKDVIGLAETGSGKTAAFALPILQALLE 66
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P+R A LILTPTRELA Q+ E + ++C ++VGG+ Q L P I
Sbjct: 67 NPQRYFA---LILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMHAQGLLLEKKPHI 123
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR++DHL N+ +L + LI+DEADR+L + F E+++++R+ P+ R+T+LFS
Sbjct: 124 IIATPGRLVDHLENTKGFNLRQIKFLIMDEADRILNMDFEVEVNKILRVMPRERRTLLFS 183
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSKT 241
AT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 184 ATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGNN 243
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F +IF GT R +L A LHG ++Q +R+ AL FR ++ LI+TD
Sbjct: 244 F----MIFCGTCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFRAKNRSILISTD 299
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++TF+T D L + I +
Sbjct: 300 VASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFITQYDVELYQRIEQL 359
Query: 362 AGSKL 366
+L
Sbjct: 360 ISKQL 364
>gi|398978205|ref|ZP_10687628.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM25]
gi|398137316|gb|EJM26378.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM25]
Length = 446
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 153/373 (41%), Positives = 224/373 (60%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 QFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +PD
Sbjct: 64 GPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV CP R+QTMLF
Sbjct: 124 ILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E+I L P L + ++ ST ++++ + ++E ++ L +
Sbjct: 183 SATTGGSGLREMIAKVLNNPEHLQLNAVSQLNSTTRQQIITADHNQ--HKEQIVNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+AT
Sbjct: 241 ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I +
Sbjct: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQSFERRTIKE 373
>gi|218132094|ref|ZP_03460898.1| hypothetical protein BACEGG_03721 [Bacteroides eggerthii DSM 20697]
gi|217985744|gb|EEC52085.1| DEAD/DEAH box helicase [Bacteroides eggerthii DSM 20697]
Length = 392
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 223/365 (61%), Gaps = 4/365 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+LN++ +L+A E GY PTPIQA IP L G+DI G A TG+GKTAAFA+P +++L
Sbjct: 25 DLNITESILKAIEEKGYVNPTPIQAKAIPALLVGKDILGCAQTGTGKTAAFAIPIIQQLQ 84
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+I+ LILTPTRELA+Q+ I+ A++T +R ++ GG++ + Q L D
Sbjct: 85 ADKSLNNSIKALILTPTRELALQISECIDDYAKYTQVRHGVIFGGVNQRTQVNMLHKGVD 144
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++D L N V L+++ +LDEADR+L++GF +I L+ PK +QT+LF
Sbjct: 145 ILVATPGRLLD-LMNQGYVRLNNIQHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQTLLF 203
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ + + L L +P+++S P + + + V + + + +L+S+ KT
Sbjct: 204 SATMPDTIISLTNSLLKQPVKISITPKSSTVDAIEQTVYFVEKKE---KSKLLISILHKT 260
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
V++FS TK A R+ + G A + + +HGN +Q R ALE F+ + +IATD
Sbjct: 261 QGQSVLVFSRTKHNADRIVRVLGKAGIGSQAIHGNKSQNARQSALENFKSGKIRVMIATD 320
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARG+DI + VINY P +YVHR+GRT RAG G A++F + +R L+ I K
Sbjct: 321 IAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNSGTALSFCSQEERKLVNDIQKL 380
Query: 362 AGSKL 366
G KL
Sbjct: 381 TGKKL 385
>gi|334348319|ref|XP_001371236.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Monodelphis domestica]
Length = 459
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 148/376 (39%), Positives = 216/376 (57%), Gaps = 8/376 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG+ PT IQ IP+AL GRDI G A TGSGKT AFALP L LL
Sbjct: 29 DLGVTDVLCDACDQLGWKTPTKIQIEAIPMALDGRDIIGLAETGSGKTGAFALPILNALL 88
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A L+LTPTRELA Q+ E + + C ++VGG+ + Q AL P
Sbjct: 89 DTPQRFFA---LVLTPTRELAFQISEQFEALGSSIGVECAVIVGGIDSMSQSLALAKKPH 145
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ ++++L P+ R+T LF
Sbjct: 146 VIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKLIPRDRKTFLF 205
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 206 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDSYLVYILNELAGN 265
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F ++F T R +L A LHG ++Q +RL +L F+ + L+AT
Sbjct: 266 SF----MVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLAT 321
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G ++TFVT D L + I
Sbjct: 322 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELYQRIEH 381
Query: 361 RAGSKLKSRIVAEQSI 376
G KL + E+ +
Sbjct: 382 LIGKKLPAFPTQEEEV 397
>gi|424662680|ref|ZP_18099717.1| hypothetical protein HMPREF1205_03066 [Bacteroides fragilis HMW
616]
gi|404576370|gb|EKA81108.1| hypothetical protein HMPREF1205_03066 [Bacteroides fragilis HMW
616]
Length = 427
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 153/406 (37%), Positives = 231/406 (56%), Gaps = 17/406 (4%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
LNL P+L+A GY+ PTPIQ IP+ L G+D+ G A TG+GKTAAF++P L++L
Sbjct: 5 NLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPILQKL- 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+ I+ L+LTPTRELA+Q+ E ++T ++ ++ GG+ K Q ALR
Sbjct: 64 YKTDHRKGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALRGGIQ 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++D + V L+ L +LDEADR+L++GF +I +++L P +RQT+ F
Sbjct: 124 ILVATPGRLLDLISQGF-VSLNSLDFFVLDEADRMLDMGFIHDIKRILKLLPTKRQTLFF 182
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ +++ L LTKP ++ P++ ++++V + + ++ +L+ L
Sbjct: 183 SATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKKE---KKDLLIHLLKDA 239
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
V+IF+ TK A +L + A + A +HGN TQ R AL F+ + LIATD
Sbjct: 240 SIESVLIFTRTKYGADKLARILTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALIATD 299
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARG+D+ + VINY P +YVHR+GRT RAG EG A++F + LK I K
Sbjct: 300 IAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAISFCESEELPYLKDIQKL 359
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAE 407
G + +V E A QEE++E I KA+
Sbjct: 360 IGKNIP--VVKEHPFVTAE----------GAKAQEEKQEEIKVKAK 393
>gi|117919262|ref|YP_868454.1| DEAD/DEAH box helicase [Shewanella sp. ANA-3]
gi|117611594|gb|ABK47048.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
Length = 578
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 149/382 (39%), Positives = 228/382 (59%), Gaps = 12/382 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+ +A GY P+PIQA IP LTG+D+ +A TG+GKTA F LP LE LL
Sbjct: 6 LGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE-LLS 64
Query: 63 RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+ + A IR L+LTPTRELA QV +E ++ +R +V GG+ Q LR
Sbjct: 65 KGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKLRHGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D++VATPGR++D L +V + L VL+LDEADR+L++GF +I +++ + P +RQ ++
Sbjct: 125 DVLVATPGRLLD-LEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKKILAMLPAKRQNLM 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++++ EL K + +P+ +S P +T+ + + + + ++ A+L+ L +
Sbjct: 184 FSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQK---SALLIQLIKQ 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++FS TK A+RL A + AA +HGN +Q R +AL F+ V L+AT
Sbjct: 241 EDWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V+ + LL+ I
Sbjct: 301 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGALGQAVSLVSSEETKLLRDI-- 358
Query: 361 RAGSKLKSRIVAEQSITKWSKI 382
+L +R++ Q + +S +
Sbjct: 359 ---ERLINRVLERQEVEGFSPV 377
>gi|193683600|ref|XP_001951837.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Acyrthosiphon pisum]
Length = 450
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 155/400 (38%), Positives = 223/400 (55%), Gaps = 23/400 (5%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L CE L + PT IQ IP+AL G+DI G A TGSGKT AFA+P L+ LL
Sbjct: 23 DLGVTDVLCETCETLKWKTPTKIQKEAIPVALQGKDIIGLAETGSGKTGAFAIPILQALL 82
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A LILTPTRELA Q+ IE + ++C ++VGG+ Q L P
Sbjct: 83 ENPQRYFA---LILTPTRELAFQISEQIEALGSSIGVKCAVIVGGMDMMAQSLMLAKKPH 139
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++DHL N+ L +L VL++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 140 IIIATPGRLVDHLENTKGFSLRNLKVLVMDEADRILNMDFEEEVDKILKVIPRERRTFLF 199
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSK 240
SAT+T+ V +L + SL P+R+ + L + + I + ++V +L +
Sbjct: 200 SATMTKKVQKLHRASLVDPVRVEVSTKFQTVEQLQQYYIFIPVKYKDVYLVHILNEMAGN 259
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F ++F T R+ +L L A LHG +TQ +RL +L F+ + LI+T
Sbjct: 260 SF----MVFMATCNGTVRVALLLRNLGLDAIPLHGQMTQNKRLASLNKFKSKSRSILIST 315
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DV++RGLDI V VIN+ P Y+HRVGRTARAGR G A+T VT D L + I +
Sbjct: 316 DVSSRGLDIPHVDVVINFDMPTHSKDYIHRVGRTARAGRSGKAITLVTQYDIELYQRIEQ 375
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREE 400
KL + Q+ED LQE E
Sbjct: 376 LISKKLP---------------LYQVEDDEVMCLQERVSE 400
>gi|406911902|gb|EKD51608.1| hypothetical protein ACD_62C00220G0002 [uncultured bacterium]
Length = 421
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 155/362 (42%), Positives = 219/362 (60%), Gaps = 7/362 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
L LS LL+A + GYS PTPIQ IPL L +DI GSA TG+GKTA F LP L+RL+
Sbjct: 5 NLGLSPELLQAVQGQGYSVPTPIQTKAIPLILNKQDILGSAQTGTGKTAGFTLPLLQRLM 64
Query: 62 YRPKRIPA---IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
K IR LILTPTRELA QV +E + +R +V GG++ + Q L+
Sbjct: 65 LEKKNGGGKRHIRALILTPTRELAAQVCKSVETYGKHLPLRSTVVFGGVNMEAQVRRLQY 124
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
DIVVATPGR++DH+ ++DL + VLILDEADR+L++GF ++ ++ L PK RQ
Sbjct: 125 GVDIVVATPGRLLDHI-GQRTIDLSRVDVLILDEADRMLDMGFIPDVKRIIALLPKGRQN 183
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
+LFSATLT +V +L L P+ + P +++ V + R R + +L +
Sbjct: 184 LLFSATLTNEVKKLAMGFLNNPVVVEVAPQNTASELVSQVVHHVDRRR---KRELLSHII 240
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+ +V++F+ TK A+RL + + A +HGN TQA R +ALE F+K+ V L+
Sbjct: 241 NTKKWQRVLVFTRTKHGANRLAEELSIDGISATAIHGNKTQAARTKALEQFKKEAVRVLV 300
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+AARGLDI + V+N+ P YVHR+GRT RAG EG A++ V ++ +LL+ I
Sbjct: 301 ATDIAARGLDIQQMPHVVNFDLPHVPEDYVHRIGRTGRAGHEGEALSLVCVDELNLLRNI 360
Query: 359 AK 360
+
Sbjct: 361 ER 362
>gi|372271032|ref|ZP_09507080.1| DEAD/DEAH box helicase [Marinobacterium stanieri S30]
Length = 433
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 154/387 (39%), Positives = 228/387 (58%), Gaps = 12/387 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS +L+A GY P+PIQ IP L GRD+ +A TG+GKTA F LP LERL
Sbjct: 6 LGLSDAILKAISDQGYDTPSPIQQQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLLERL-S 64
Query: 63 RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+ +R A RVLILTPTRELA QV + + ++ +V GG+ Q ALR
Sbjct: 65 KGERAKANQARVLILTPTRELAAQVADSVATYGKHLQLKSAVVFGGVKINPQMMALRKGA 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DI++ATPGR++D L + +V D+L L+LDEADR+L++GF +I ++RL P +RQ +L
Sbjct: 125 DILIATPGRLLD-LHSQNAVRFDNLEALVLDEADRMLDMGFIHDIKRILRLLPSKRQNLL 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++D+ EL K + P+ +S P T+ + + + + R + +L+ L
Sbjct: 184 FSATFSKDIRELAKGLVNDPVEVSVTPRNSTAETVKQWIAPVDKKR---KSPLLIKLIKD 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++F+ TK A+RL A +KAA +HGN +Q R +AL F+ + + L+AT
Sbjct: 241 NSWYQVLVFTRTKHGANRLATQLDKANIKAAAIHGNKSQGARTKALNAFKTKDIQVLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARGLDI + V+N+ P YVHR+GRT RAG +G AV+ V+ ++ L+AI
Sbjct: 301 DIAARGLDIDLLPQVVNFDLPNVAEDYVHRIGRTGRAGADGQAVSLVSADEIDQLRAI-- 358
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQME 387
+L S+I+ + I + + E E
Sbjct: 359 ---ERLTSKIIPREMIDGFEPVHELPE 382
>gi|237806840|ref|YP_002891280.1| DEAD/DEAH box helicase [Tolumonas auensis DSM 9187]
gi|237499101|gb|ACQ91694.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
Length = 489
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 145/360 (40%), Positives = 218/360 (60%), Gaps = 5/360 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL LS PLLRA + GY P+PIQ IP L G+D+ +A TG+GKTA F LP L RL
Sbjct: 5 ELGLSEPLLRAVKDKGYDTPSPIQLQAIPAVLAGQDVMAAAQTGTGKTAGFTLPLLHRLS 64
Query: 62 -YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
P R A+R L+LTPTRELA QV + ++ ++ +V GG++ Q A+R
Sbjct: 65 RGNPARSNAVRALVLTPTRELAAQVAESVTTYGKYLPLKSVVVFGGVNINPQMLAMRKGA 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D++VATPGR++D L + ++ L VLILDEADR+L++GF +I +++ + PK RQT++
Sbjct: 125 DVLVATPGRLLD-LVSQNALHFRQLEVLILDEADRMLDMGFIRDIRKIINMLPKDRQTLM 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++++ L K L +P+++ P T+ + + + + R+ A+L L
Sbjct: 184 FSATFSDEIRTLAKGLLNEPVQIDVAPRNTTAETIKQTICPVDKGRK---PALLCHLIKH 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++F TK A++L A ++AA +HGN +Q R AL F+ V L+AT
Sbjct: 241 NNWQQVLVFMRTKHGANKLVTQLETAGIQAAAIHGNKSQGARTRALSGFKDGSVRVLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARG+DI + V+NY P YVHR+GRT RAG EG+A++ V+ +++ LL + K
Sbjct: 301 DIAARGIDIAQLPQVVNYELPNIAEDYVHRIGRTGRAGMEGHAISLVSADEQPLLVDVEK 360
>gi|196000560|ref|XP_002110148.1| hypothetical protein TRIADDRAFT_21567 [Trichoplax adhaerens]
gi|190588272|gb|EDV28314.1| hypothetical protein TRIADDRAFT_21567, partial [Trichoplax
adhaerens]
Length = 424
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 145/373 (38%), Positives = 216/373 (57%), Gaps = 6/373 (1%)
Query: 4 NLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYR 63
L PL +AC+ L + +PT IQ IP+ALTG+DI G A TGSGKTAAF LP L+ LL +
Sbjct: 1 GLMEPLCQACDRLQWKQPTKIQCEAIPVALTGKDIIGLAETGSGKTAAFVLPILQALLDK 60
Query: 64 PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIV 123
P+R+ A LILTPTRELA Q+ IE + ++C +++GG+ Q L P I+
Sbjct: 61 PQRLFA---LILTPTRELAFQISEQIEALGSSIGVQCAVIIGGIDMMTQSIMLAKKPHII 117
Query: 124 VATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSA 183
+ TPGR+ DHL N+ L L L++DEADR+L + F AE+ +++ + PK R+T LFSA
Sbjct: 118 IGTPGRLADHLANTKGFSLRPLKYLVMDEADRILNMDFEAEVDKILSVLPKERRTYLFSA 177
Query: 184 TLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFT 243
T+T+ V +L + S+ P+++ L + + + ++ L+S+ ++
Sbjct: 178 TMTKKVKKLQRASVQDPVKIEVSTKYTTVEKLQQTYIFVPAK---YKDCYLVSILNELAG 234
Query: 244 SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA 303
+ ++F T R+ ++ A LHG ++Q++RL AL F+ + L+ATDVA
Sbjct: 235 NSFMVFCATCINTQRIGLMLRNLGFNAIPLHGQMSQSKRLGALHKFKSKESSILVATDVA 294
Query: 304 ARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAG 363
+RGLDI V VIN+ P Y+HRVGRTARAGR G ++ FVT D L + I +
Sbjct: 295 SRGLDIPHVDIVINFDAPSHSKDYIHRVGRTARAGRSGRSIIFVTQYDVELFQRIEQLIA 354
Query: 364 SKLKSRIVAEQSI 376
KL E+ +
Sbjct: 355 KKLPEYPTVEEEV 367
>gi|315499118|ref|YP_004087922.1| dead/deah box helicase domain-containing protein [Asticcacaulis
excentricus CB 48]
gi|315417130|gb|ADU13771.1| DEAD/DEAH box helicase domain protein [Asticcacaulis excentricus CB
48]
Length = 605
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 160/422 (37%), Positives = 241/422 (57%), Gaps = 26/422 (6%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L LS LL E GY PTPIQA IP+ L D+ G A TG+GKTAAFALP L +L
Sbjct: 6 DLGLSASLLSTLEKEGYHTPTPIQAQAIPILLNKHDLLGIAQTGTGKTAAFALPILHHIL 65
Query: 62 YRPKRIPA---IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
+ IPA RVL+L+PTRELA Q+ + ++ ++ + GG+ Q AL+
Sbjct: 66 SN-RIIPAPRSCRVLVLSPTRELATQIADSFKAYSKGLGLQIATIFGGVKYGPQYKALQG 124
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
DI+VATPGR+IDH+ ++DL + L+LDEAD++L++GF I ++ P +RQ
Sbjct: 125 GIDILVATPGRLIDHIEQK-TIDLKAVEHLVLDEADQMLDMGFIKPIRQVASRLPAQRQN 183
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
+ FSAT+ +++ L LT P ++ P A +T++V+ I + R + A+L L
Sbjct: 184 LFFSATMPKEIAGLANELLTNPKKVEITPEATTAERVTQQVIFIEQQR---KRALLSELY 240
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+ ++ +IF+ TK+ A R+ ++AA +HG+ Q+QR AL+ F+ V L+
Sbjct: 241 ADEKLARTLIFTRTKRGADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFKAGRVRALV 300
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+AARG+D+ V VINY P +YVHR+GRTARAG+EG+++T V D++R LLK I
Sbjct: 301 ATDIAARGIDVDNVTHVINYELPFVAEAYVHRIGRTARAGKEGHSITLVADDERKLLKDI 360
Query: 359 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 418
+ + Q I W ++ +DQ +L +E IL + E K + +
Sbjct: 361 ER----------ITRQRIPSW----DRRKDQALKLL----DEAILASGQTEKPKTPDRVV 402
Query: 419 HK 420
K
Sbjct: 403 EK 404
>gi|424921971|ref|ZP_18345332.1| Superfamily II DNA and RNA helicase [Pseudomonas fluorescens R124]
gi|404303131|gb|EJZ57093.1| Superfamily II DNA and RNA helicase [Pseudomonas fluorescens R124]
Length = 446
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 152/373 (40%), Positives = 224/373 (60%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 QFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +PD
Sbjct: 64 GPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV CP R+QTMLF
Sbjct: 124 ILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E++ L P L + ++ ST ++++ + ++E ++ L +
Sbjct: 183 SATTGGSGLREMVAKVLNNPEHLQLNAVSQLNSTTRQQIITADHNQ--HKEQIVNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+AT
Sbjct: 241 ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I +
Sbjct: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQSFERRTIKE 373
>gi|148975750|ref|ZP_01812581.1| ATP-dependent RNA helicase RhlE [Vibrionales bacterium SWAT-3]
gi|145964823|gb|EDK30075.1| ATP-dependent RNA helicase RhlE [Vibrionales bacterium SWAT-3]
Length = 551
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 141/346 (40%), Positives = 207/346 (59%), Gaps = 5/346 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A EA GY KP+PIQ +P LTG+D+ +A TG+GKTA F LP LE L
Sbjct: 6 LGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILELLSK 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ R +R L+LTPTRELA QV+ + K + +V GG+ Q LR D
Sbjct: 66 GPRVRQNQVRALVLTPTRELAAQVNGSVVKYGLNLPLTSSVVFGGVKINPQMQKLRKGSD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++D L N +V D L +L+LDEADR+L++GF +I +++ PK+RQ +LF
Sbjct: 126 VLVATPGRLLD-LYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQNLLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++D+ L K + P+ +S P+ T+ + + + + + + +L L
Sbjct: 185 SATFSDDIRSLAKGLVNNPVEISVSPANSTAKTVEQSIYPVDKKK---KSPMLAKLIKDN 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++FS TK A++L + AA +HGN +Q R +ALE F+ V L+ATD
Sbjct: 242 DWRQVLVFSKTKHGANKLARFLDEQGITAAPIHGNKSQGARTKALENFKTGKVRVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 347
+AARG+DI + V+N+ P YVHR+GRT RAG G A++ V
Sbjct: 302 IAARGIDIPQLPQVVNFDLPHVSEDYVHRIGRTGRAGEVGKAISLV 347
>gi|163786067|ref|ZP_02180515.1| putative ATP-dependent RNA helicase RhlE [Flavobacteriales
bacterium ALC-1]
gi|159877927|gb|EDP71983.1| putative ATP-dependent RNA helicase RhlE [Flavobacteriales
bacterium ALC-1]
Length = 436
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 148/371 (39%), Positives = 228/371 (61%), Gaps = 7/371 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS PLLRA GY P+PIQA IP L +D+ SA TG+GKTA F LP L L
Sbjct: 6 LGLSEPLLRAISKKGYETPSPIQAKAIPPVLEEKDVLASAQTGTGKTAGFTLPLLHLLSQ 65
Query: 63 RP--KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
RP K P IR LILTPTRELA QVH+ +++ ++F +I+ ++ GG++ K Q +R
Sbjct: 66 RPVQKHRP-IRALILTPTRELAAQVHTNVKEYSEFLNIKSTVIFGGVNQKPQVATIRKGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D++VATPGR+ID L + + L + + +LDEADR+L++GF +I +++L P +RQ ++
Sbjct: 125 DVLVATPGRLID-LESQGLLSLKRVEIFVLDEADRMLDMGFLRDIERVMKLMPDKRQNLM 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++D+ +L L P+++ A P + ++V R+ + ++ +++ L S+
Sbjct: 184 FSATFSKDIKKLAYSILNNPVKVEATPENTAVEVIDQKVYRVAKGKKT---GLIIKLISE 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++F+ TK A++L A + AA +HGN +Q R +AL F+ V L+AT
Sbjct: 241 GNWKQVLVFTRTKHGANKLCKKMISAGITAAAIHGNKSQGARTKALAGFKSGKVRVLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARGLDI + V+NY P YVHR+GRT RAG G A++ V+ ++ + L++I K
Sbjct: 301 DIAARGLDIPLLPHVVNYEIPNISEDYVHRIGRTGRAGASGEAISLVSADETTYLRSIEK 360
Query: 361 RAGSKLKSRIV 371
K++ +V
Sbjct: 361 LIDMKIEVEVV 371
>gi|313112968|ref|ZP_07798612.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
gi|310624733|gb|EFQ08044.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
Length = 638
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 147/363 (40%), Positives = 213/363 (58%), Gaps = 9/363 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNLS PLLRA + GY P+PIQAA IP L+GRD+ G A TG+GKTAAFALP L+RL
Sbjct: 5 ELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLSGRDLMGCAQTGTGKTAAFALPMLDRLT 64
Query: 62 YR-PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
P+R AIR LILTPTRELA+Q+ + ++ +R ++ GG+ Q AL+
Sbjct: 65 ANAPRRKGAIRALILTPTRELALQIGESFDAYGKYLKLRSTVIFGGVGQAPQVEALKKGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DI++A PGR+ D + +DL +L + +LDEADR+L++GF ++ +++ P RQ ++
Sbjct: 125 DILIACPGRLNDLIGQGF-IDLSNLEIFVLDEADRMLDMGFVHDVKKVIAKLPGERQNLM 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+ ++++L L KP + DP + + + + + E + LL K
Sbjct: 184 FSATMPTEIEQLAAGILRKPAFVKVDPVSSTVDRIQQSLYHV----EKGNKKFLLPWLIK 239
Query: 241 TFTSKVI---IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
V+ +FS TK A ++ + AA +HGN +Q R+ ALE F+ L
Sbjct: 240 NLQPPVVNALVFSRTKHGADKIAKDLTKQGIPAAAIHGNKSQTARVTALENFKAGKTKVL 299
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATD+AARG+DI + V NY P +YVHR+GRTARAG +G AV+F ++ L
Sbjct: 300 VATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEQEYLAG 359
Query: 358 IAK 360
I K
Sbjct: 360 IEK 362
>gi|427702007|ref|YP_007045229.1| DNA/RNA helicase [Cyanobium gracile PCC 6307]
gi|427345175|gb|AFY27888.1| DNA/RNA helicase, superfamily II [Cyanobium gracile PCC 6307]
Length = 420
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 158/373 (42%), Positives = 225/373 (60%), Gaps = 9/373 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A A GYS P+PIQ CIP L G D+ +A TG+GKTA F LP LERL +
Sbjct: 11 LGLSEPILKAVAAKGYSSPSPIQRQCIPAVLAGHDVMAAAQTGTGKTAGFTLPMLERLRH 70
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P R +R L+LTPTRELA QV + ++ D+R +V GG+S Q LR D
Sbjct: 71 GPHARAGVVRALVLTPTRELAAQVADSVTAYGRYLDLRSDVVFGGVSANPQMQRLRRGAD 130
Query: 122 IVVATPGRMID-HLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
++VATPGR++D H +N++ LD + +L+LDEADR+L++GF +I ++ L P +RQ +L
Sbjct: 131 VLVATPGRLMDLHQQNALR--LDRVEILVLDEADRMLDMGFIRDIRRILSLLPAKRQNLL 188
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT + ++ L L P++L A P + + L E+V+ M +++ LLS +
Sbjct: 189 FSATFSTEIRRLATGLLHTPVQLQATPE-NQAAPLVEQVIHPCDM---DRKGDLLSHLIR 244
Query: 241 TFT-SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
T +V++FS TK A+RL L AA +HGN +Q R AL F+ V L+A
Sbjct: 245 TNDWGQVLVFSRTKHGANRLAERLEKEGLGAAAIHGNKSQGARTRALAEFKSGEVRVLVA 304
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TD+AARG+DI + V+N P YVHR+GRT RAG+ G+A++ V + LL+AI
Sbjct: 305 TDIAARGIDIHQLPHVVNLDLPNVAEDYVHRIGRTGRAGQNGHAISLVAAEEHELLRAIE 364
Query: 360 KRAGSKLKSRIVA 372
+ GS L + VA
Sbjct: 365 RLVGSPLPRQEVA 377
>gi|313205949|ref|YP_004045126.1| dead/deah box helicase domain-containing protein [Riemerella
anatipestifer ATCC 11845 = DSM 15868]
gi|383485266|ref|YP_005394178.1| dead/deah box helicase domain protein [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
gi|386322068|ref|YP_006018230.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-GD]
gi|416111966|ref|ZP_11592990.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer
RA-YM]
gi|312445265|gb|ADQ81620.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
gi|315022262|gb|EFT35290.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer
RA-YM]
gi|325336611|gb|ADZ12885.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-GD]
gi|380459951|gb|AFD55635.1| dead/deah box helicase domain protein [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
Length = 371
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 144/367 (39%), Positives = 223/367 (60%), Gaps = 4/367 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L+LS P+L+A GY+ PT IQ IP L GRD+ G A TG+GKTAAF++P L+ L
Sbjct: 5 QLSLSSPILKAISDAGYTTPTAIQEKAIPTILEGRDLIGCAQTGTGKTAAFSIPLLQILS 64
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
PK+ ++R LILTPTRELA+Q+ IE+ ++F +I+ + GG+ QE AL D
Sbjct: 65 ETPKKGKSVRALILTPTRELAIQIQENIEQYSKFLNIKHLSIFGGVPQGKQERALNQGVD 124
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++D ++ + + L + +L+LDEADR+L++GF ++ +++ PK+RQT+ F
Sbjct: 125 ILIATPGRLLDLMQQGL-LSLSQIEILVLDEADRMLDMGFVNDVKKILTKVPKKRQTLFF 183
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ + + + L P ++ P + T+ + V + + + N +L+++ T
Sbjct: 184 SATMPNSIRQFAETILDNPAEVTVTPVSSTAKTIEQSVYFVEKNDKTN---LLINILKDT 240
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ +IF+ TK A RL G + AA +HGN +Q R +AL+ F+ + LIATD
Sbjct: 241 SELRSLIFTRTKHGADRLVKQLGRTGIFAAAIHGNKSQNARQKALKDFKDNRISVLIATD 300
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARG+DI + VINY P +YVHR+GRT RAG G A++F +R LK I K
Sbjct: 301 IAARGIDIDELPQVINYELPNVPETYVHRIGRTGRAGTSGNAISFCGTEERKDLKNIQKL 360
Query: 362 AGSKLKS 368
G + +
Sbjct: 361 IGFTMNT 367
>gi|442314863|ref|YP_007356166.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-CH-2]
gi|441483786|gb|AGC40472.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-CH-2]
Length = 376
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 144/367 (39%), Positives = 223/367 (60%), Gaps = 4/367 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L+LS P+L+A GY+ PT IQ IP L GRD+ G A TG+GKTAAF++P L+ L
Sbjct: 10 QLSLSSPILKAISDAGYTTPTAIQEKAIPTILEGRDLIGCAQTGTGKTAAFSIPLLQILS 69
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
PK+ ++R LILTPTRELA+Q+ IE+ ++F +I+ + GG+ QE AL D
Sbjct: 70 ETPKKGKSVRALILTPTRELAIQIQENIEQYSKFLNIKHLSIFGGVPQGKQERALNQGVD 129
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++D ++ + + L + +L+LDEADR+L++GF ++ +++ PK+RQT+ F
Sbjct: 130 ILIATPGRLLDLMQQGL-LSLSQIEILVLDEADRMLDMGFVNDVKKILTKVPKKRQTLFF 188
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ + + + L P ++ P + T+ + V + + + N +L+++ T
Sbjct: 189 SATMPNSIRQFAETILDNPAEVTVTPVSSTAKTIEQSVYFVEKNDKTN---LLINILKDT 245
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ +IF+ TK A RL G + AA +HGN +Q R +AL+ F+ + LIATD
Sbjct: 246 SELRSLIFTRTKHGADRLVKQLGRTGIFAAAIHGNKSQNARQKALKDFKDNRISVLIATD 305
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARG+DI + VINY P +YVHR+GRT RAG G A++F +R LK I K
Sbjct: 306 IAARGIDIDELPQVINYELPNVPETYVHRIGRTGRAGTSGNAISFCGTEERKDLKNIQKL 365
Query: 362 AGSKLKS 368
G + +
Sbjct: 366 IGFTMNT 372
>gi|408792586|ref|ZP_11204196.1| DEAD/DEAH box helicase [Leptospira meyeri serovar Hardjo str. Went
5]
gi|408463996|gb|EKJ87721.1| DEAD/DEAH box helicase [Leptospira meyeri serovar Hardjo str. Went
5]
Length = 471
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 149/364 (40%), Positives = 217/364 (59%), Gaps = 6/364 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L R + +A GY+KPTPIQ IPL L D+ G A TG+GKTAAFALP + L+
Sbjct: 10 DLKLDRSIQKAVVETGYTKPTPIQIQAIPLLLDNHDLLGCAQTGTGKTAAFALPMIHNLI 69
Query: 62 -YRPKRIP-AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
R K P R L+L PTRELA+QVH ++T IR ++ GG+ Q A+ S
Sbjct: 70 STRAKPNPKQPRSLVLVPTRELAIQVHESFVLYGKYTQIRTAVIFGGVGQNPQAKAIASG 129
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
D+++ATPGR++D L N V L +L + +LDEADR+L++GF +I +++ PKRRQ +
Sbjct: 130 LDVLIATPGRLVD-LMNQNLVSLKNLEIFVLDEADRMLDMGFIHDIRKIISYLPKRRQNL 188
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
FSAT+ ++++L L +P+R+ P + +++ V+ + N +LL L
Sbjct: 189 FFSATMPSEIEKLANSILVEPIRIDITPVSSTVELISQSVMYTELADKKN---LLLHLFK 245
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
K IIF+ TK A+++ L + +K +HGN +Q+ R +ALE FR L+A
Sbjct: 246 DKNFKKTIIFTKTKHGANKISELLNKSGIKTDVIHGNKSQSARQKALEDFRSGKNRALVA 305
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TD+AARG+DI + VINY P +YVHR+GRTARAG+ G A+ ++RSL+K I
Sbjct: 306 TDLAARGIDIDDITHVINYEIPYVPETYVHRIGRTARAGKNGIAIAIAEADERSLIKDIE 365
Query: 360 KRAG 363
K G
Sbjct: 366 KVIG 369
>gi|320527000|ref|ZP_08028189.1| putative ATP-dependent RNA helicase RhlE [Solobacterium moorei
F0204]
gi|320132585|gb|EFW25126.1| putative ATP-dependent RNA helicase RhlE [Solobacterium moorei
F0204]
Length = 459
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 146/359 (40%), Positives = 211/359 (58%), Gaps = 6/359 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L P+L A Y P+PIQ IP+ L G+DI A TG+GKTAAFALP L +L
Sbjct: 5 DLELKEPILSAVNKAKYETPSPIQEKAIPVMLEGKDIVACAQTGTGKTAAFALPILNKLE 64
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
Y+ K IR L+LTPTRELAVQ+ +K ++ +R C V GG + Q ALRS D
Sbjct: 65 YKKKH--QIRALVLTPTRELAVQIFENFKKFGRYLKLRACCVYGGAPSGPQRKALRSGCD 122
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+ D + + L D+ V +LDEADR+L++GF ++ + P+ RQT++F
Sbjct: 123 ILIATPGRLNDFMVQG-EIILSDIEVFVLDEADRMLDMGFIGDVRTIASRIPEARQTVMF 181
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ +++ EL L P+ + P A T+T+ +V + +++ +L +
Sbjct: 182 SATMPKEIKELANELLHDPVDIRVAPPASPAETITQYLVYCEK---ADKKRLLKDMLVSP 238
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+K I+F+ TK A RL +K +HG+ TQ QR AL+ FR VD L+ATD
Sbjct: 239 EVTKAIVFTRTKIGADRLTKKLIEDGIKVLTIHGDKTQGQRQNALQRFRTNQVDVLVATD 298
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
VAARG+DI G+ V NY P + SY+HR+GR RAG+EG +++ + LL +I K
Sbjct: 299 VAARGIDISGISHVFNYDLPEEDESYIHRIGRAGRAGKEGISISLCCHEELGLLASIEK 357
>gi|359782600|ref|ZP_09285820.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
psychrotolerans L19]
gi|359369420|gb|EHK69991.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
psychrotolerans L19]
Length = 630
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 156/367 (42%), Positives = 215/367 (58%), Gaps = 16/367 (4%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ L LS L RA E GY+ PTP+Q IP L GRD+ +A TG+GKT FALP LERL
Sbjct: 4 ISLGLSEALARAVEDAGYTNPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERL 63
Query: 61 LYRPKRIP--------AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 112
P P RVL+LTPTRELA QVH + A+ +R V GG+ K Q
Sbjct: 64 F--PNGHPDGRQHVAKQPRVLVLTPTRELAAQVHDSFKVYARDLPMRSACVFGGVGLKPQ 121
Query: 113 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172
TAL D++VA PGR++D L SVDL + +L+LDEADR+L++GF ++ +++
Sbjct: 122 VTALAKGVDVLVACPGRLLD-LAGQQSVDLSAVEILVLDEADRMLDMGFIHDVKKVLARL 180
Query: 173 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMREVNQE 231
P RRQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+ +
Sbjct: 181 PARRQNLLFSATFSKDITDLAGKLLQDPERIEVTP----PNTTVERIEQRLFRIPANQKR 236
Query: 232 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 291
A+L L + +V++F+ TK A+RL L AA +HGN +Q R +AL F+
Sbjct: 237 ALLAHLITLGAWEQVLVFTRTKHGANRLAEYLNKHGLPAAPIHGNKSQNARTKALADFKS 296
Query: 292 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
V L+ATD+AARGLDI + V+N+ P YVHR+GRT RAGR G A++ V+ ++
Sbjct: 297 NEVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVSPDE 356
Query: 352 RSLLKAI 358
LLKAI
Sbjct: 357 EKLLKAI 363
>gi|334131082|ref|ZP_08504848.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
gi|333443712|gb|EGK71673.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
Length = 535
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 153/361 (42%), Positives = 214/361 (59%), Gaps = 8/361 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L+ PLLRA GY+ PTPIQ IPL + GRD+ +A TG+GKTA F LP L LL
Sbjct: 10 LGLAEPLLRAISEEGYTHPTPIQQKAIPLVIAGRDLLAAAQTGTGKTAGFTLPILHTLLN 69
Query: 63 RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
RP IPA RVL+LTPTRELA QV + + +R ++ GG+ Q AL+
Sbjct: 70 RPASIPAGRPRVLVLTPTRELAAQVEESVRTYGRHAKMRSMVMFGGVGMNPQLQALKQRV 129
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DI+VATPGR++DH+ S+DL + + +LDEADR+L++GF +I +++ + PK RQT+L
Sbjct: 130 DILVATPGRLLDHV-GEKSLDLSGVEIFVLDEADRMLDMGFIRDIRKVIAVLPKVRQTLL 188
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS-LCS 239
+SAT + ++ EL L P + P +T E V + M E Q+ LL+ L +
Sbjct: 189 YSATFSPEIRELAHGLLNDPAEVEVAPR----NTTAERVAQEVYMVEQKQKRHLLAHLIN 244
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+ S+V++F+ TK A+RL + AA +HGN +Q R AL F+ + L+A
Sbjct: 245 QGAWSQVLVFTRTKHGANRLAEQLDKQGITAAAIHGNKSQNARTRALADFKSNTLRVLVA 304
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TD+AARGLDI + V+N+ P YVHR+GRT RAG G A++ V + LL AI
Sbjct: 305 TDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGASGAAISLVDREEAKLLTAIE 364
Query: 360 K 360
K
Sbjct: 365 K 365
>gi|146413022|ref|XP_001482482.1| hypothetical protein PGUG_05502 [Meyerozyma guilliermondii ATCC
6260]
Length = 475
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 148/366 (40%), Positives = 214/366 (58%), Gaps = 6/366 (1%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ELNL L+ A E L Y+KPTPIQ+ IP AL G+DI G A TGSGKTAAFA+P L+ L
Sbjct: 67 LELNLVPELMEAIEKLKYTKPTPIQSGAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSL 126
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+ +R L+L PTRELA Q+ + + +R +VGG+ Q L P
Sbjct: 127 -WEAQR--PYYALVLAPTRELAYQIKETFDALGSGMGVRSVCIVGGMDMMDQARDLMRKP 183
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
I+VATPGR++DHL N+ L L L++DEADRLL++ F + +++++ P +R T L
Sbjct: 184 HILVATPGRIMDHLENTKGFSLKSLQYLVMDEADRLLDMDFGPALDKILKVIPTKRTTYL 243
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T + +L + SL +P++++ + L + ++ + + + L+ L ++
Sbjct: 244 FSATMTNKIAKLQRASLHEPVKVAVSNKYQTADNLVQSMMLV---SDGYKNTFLIHLLNE 300
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+I+F+ T R +L + A LHG LTQ+QRL +L F+ + LIAT
Sbjct: 301 FMGKSIIVFTRTCAHTQRSTLLARILGFSAVPLHGQLTQSQRLGSLNKFKSGKANILIAT 360
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V VINY P D +Y+HRVGRTARAG+ G +++ VT D + I
Sbjct: 361 DVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLEMYLRIES 420
Query: 361 RAGSKL 366
G KL
Sbjct: 421 VLGFKL 426
>gi|398891184|ref|ZP_10644598.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM55]
gi|398187211|gb|EJM74560.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM55]
Length = 446
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 152/373 (40%), Positives = 223/373 (59%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 QFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +PD
Sbjct: 64 GPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV CP R+QTMLF
Sbjct: 124 ILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E+I L P L + ++ T ++++ + ++E ++ L +
Sbjct: 183 SATTGGSGLREMIAKVLNNPEHLQLNAVSQLNDTTRQQIITADHNQ--HKEQIVNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+AT
Sbjct: 241 ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I +
Sbjct: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQSFERRTIKE 373
>gi|242782113|ref|XP_002479938.1| ATP-dependent RNA helicase , putative [Talaromyces stipitatus ATCC
10500]
gi|218720085|gb|EED19504.1| ATP-dependent RNA helicase , putative [Talaromyces stipitatus ATCC
10500]
Length = 478
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 160/400 (40%), Positives = 229/400 (57%), Gaps = 5/400 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L L AC+ LGY PT IQ IPLAL RD+ G A TGSGKTAAFALP L+ L+
Sbjct: 56 DLGLIPQLCEACDTLGYKAPTAIQTEAIPLALQNRDLIGLAETGSGKTAAFALPILQALM 115
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ L+L PTRELA Q+ E + +R ++VGG+ Q A+ P
Sbjct: 116 DKPQPFFG---LVLAPTRELAYQISEAFEALGSTISVRSVVLVGGMDMVPQAIAIGKRPH 172
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L L L++DEADRLL++ F I +++++ P+ R+T LF
Sbjct: 173 IIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDMDFGPIIDKILKVLPRERRTFLF 232
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++ V+ L + SL+ PLR+S S+ + T++ + + +++ L+ L ++
Sbjct: 233 SATMSSKVEGLQRASLSNPLRVSV--SSNKYQTVSTLLQYYLFIPHKHKDVHLIWLLNEH 290
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
VIIF+ T RL IL A LHG L+Q+ RL AL FR + D LIATD
Sbjct: 291 VGQSVIIFTRTVHETMRLTILARALGFGAIALHGQLSQSARLGALGKFRSRSRDILIATD 350
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V V+NY D ++VHR+GRTARAG+ G A++ VT D + I K
Sbjct: 351 VAARGLDIPSVDLVLNYDLAADSKTHVHRIGRTARAGKSGKAISLVTQYDVEVWLRIEKA 410
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 401
KL V ++ + S + + + Q L++ E +
Sbjct: 411 LDRKLPEYKVEKEEVLILSDRVAEAQRQAITELKDLDERK 450
>gi|223634733|sp|A5DQF1.2|RRP3_PICGU RecName: Full=ATP-dependent rRNA helicase RRP3
gi|190348857|gb|EDK41404.2| hypothetical protein PGUG_05502 [Meyerozyma guilliermondii ATCC
6260]
Length = 475
Score = 275 bits (703), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 213/365 (58%), Gaps = 6/365 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNL L+ A E L Y+KPTPIQ+ IP AL G+DI G A TGSGKTAAFA+P L+ L
Sbjct: 68 ELNLVPELMEAIEKLKYTKPTPIQSGAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSL- 126
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ +R L+L PTRELA Q+ + + +R +VGG+ Q L P
Sbjct: 127 WEAQR--PYYALVLAPTRELAYQIKETFDALGSGMGVRSVCIVGGMDMMDQARDLMRKPH 184
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L L L++DEADRLL++ F + +++++ P +R T LF
Sbjct: 185 ILVATPGRIMDHLENTKGFSLKSLQYLVMDEADRLLDMDFGPALDKILKVIPTKRTTYLF 244
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T + +L + SL +P++++ + L + ++ + + + L+ L ++
Sbjct: 245 SATMTNKIAKLQRASLHEPVKVAVSNKYQTADNLVQSMMLV---SDGYKNTFLIHLLNEF 301
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+I+F+ T R +L + A LHG LTQ+QRL +L F+ + LIATD
Sbjct: 302 MGKSIIVFTRTCAHTQRSTLLARILGFSAVPLHGQLTQSQRLGSLNKFKSGKANILIATD 361
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V VINY P D +Y+HRVGRTARAG+ G +++ VT D + I
Sbjct: 362 VAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLEMYLRIESV 421
Query: 362 AGSKL 366
G KL
Sbjct: 422 LGFKL 426
>gi|296425145|ref|XP_002842103.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638362|emb|CAZ86294.1| unnamed protein product [Tuber melanosporum]
Length = 513
Score = 275 bits (703), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 158/405 (39%), Positives = 234/405 (57%), Gaps = 11/405 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL + L ACE LGY PT IQ IP+AL G+D+ G A TGSGKTAAFA+P L+ L
Sbjct: 86 ELGVMDSLCEACENLGYKNPTSIQVESIPVALEGKDLIGLAETGSGKTAAFAIPILQALW 145
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P + A IL PTRELA Q+ E + +R ++VGG+ Q AL P
Sbjct: 146 DNPTGLFAC---ILAPTRELAFQISEQFEALGGGIGVRSAVIVGGMDMMTQSVALGKKPH 202
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L +L L++DEADRLL++ F + +++++ P+ R+T LF
Sbjct: 203 ILVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKVIPQTRRTYLF 262
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T V++L + SL+ P+R+S STL ++ + I +++ L+ L ++
Sbjct: 263 SATMTSKVEKLQRASLSSPVRISVGSKYSTVSTLIQKFLFIPFK---HKDTYLVYLMNEF 319
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
IIF T Q RL IL A L+G ++Q+ RL AL F+ + L+ATD
Sbjct: 320 AGQTTIIFCRTVQETSRLAILLRHLGFNAVPLNGQMSQSARLGALNKFKSGSRNILVATD 379
Query: 302 VAARGLDI-----IGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 356
VAARGLD+ + V+N+ +D +Y+HRVGRTARAGR G +++ VT + L
Sbjct: 380 VAARGLDMHVSPDALLYCVLNHDLAQDSKTYIHRVGRTARAGRSGRSISLVTQYEVELFL 439
Query: 357 AIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 401
I G K+ V E+ + +S+ + + + + A L+EERE++
Sbjct: 440 RIEAALGKKIPEFDVQEEDVLIFSERVGEAQREAAKQLREEREKK 484
>gi|449481708|ref|XP_002195464.2| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Taeniopygia
guttata]
Length = 450
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 147/376 (39%), Positives = 220/376 (58%), Gaps = 8/376 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L +AC+ LG+ PT IQ IP+AL GRD+ G A TGSGKT AFALP L+ LL
Sbjct: 28 DLGVTDVLCKACDQLGWKVPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFALPILQALL 87
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ T Q AL P
Sbjct: 88 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQTTVIVGGIDTMSQSLALAKKPH 144
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR++DHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 145 VIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSYLVYILNELAGN 264
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q +RL +L F+ + L+AT
Sbjct: 265 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLAT 320
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++TFVT D L + I
Sbjct: 321 DVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEH 380
Query: 361 RAGSKLKSRIVAEQSI 376
G KL + + E+ +
Sbjct: 381 LIGKKLPAFPMQEEEV 396
>gi|398985369|ref|ZP_10691023.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM24]
gi|399014054|ref|ZP_10716350.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM16]
gi|398111891|gb|EJM01765.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM16]
gi|398154210|gb|EJM42690.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM24]
Length = 446
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 152/373 (40%), Positives = 224/373 (60%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 QFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +PD
Sbjct: 64 GPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV CP R+QTMLF
Sbjct: 124 ILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + ++I L P L + ++ ST ++++ + ++E ++ L +
Sbjct: 183 SATTGGSGLRDMIGKVLNNPEHLQLNAVSQLNSTTRQQIITADHNQ--HKEQIVNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+AT
Sbjct: 241 ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I +
Sbjct: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQSFERRTIKE 373
>gi|392566869|gb|EIW60044.1| DEAD-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 420
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 157/351 (44%), Positives = 206/351 (58%), Gaps = 8/351 (2%)
Query: 18 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 77
Y PT IQA +P AL GRDI G A TGSGKTAAFALP L++L PK + A +L P
Sbjct: 3 YKAPTEIQAEVLPHALQGRDIIGVASTGSGKTAAFALPILQKLWEEPKGLFAC---VLAP 59
Query: 78 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS 137
TRELAVQ+ E I +RC ++GG+ Q+ AL P IVVATPGR+ DHL +
Sbjct: 60 TRELAVQIAQQFESIGSAMGVRCATIIGGVDIMAQKVALAKKPHIVVATPGRLNDHLEET 119
Query: 138 MSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSL 197
L L L+LDEADRLL++ F I +++++ PK R T LFSAT+T V +L + SL
Sbjct: 120 KGFSLRSLQFLVLDEADRLLDMDFGPIIDKILKVIPKERTTYLFSATMTTKVAKLQRASL 179
Query: 198 TKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV-LLSLCSKTFTSKVIIFSGTKQAA 256
+ P+R+ + STL + + I + Q+ V L+ L + + +IIF+ T A
Sbjct: 180 SNPVRIEVNSKYSTVSTLLQYYLLI----PLPQKDVHLIYLANTLAQNSIIIFTRTVHDA 235
Query: 257 HRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI 316
RL I+ A LHG L+Q+ RL AL F+ L+ATDVA+RGLDI V VI
Sbjct: 236 QRLSIILRTLGFPAIPLHGQLSQSARLGALGKFKSGGRKVLVATDVASRGLDIPSVDVVI 295
Query: 317 NYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 367
NY P Y+HRVGRTARAGR G +VT VT D L+ I + G K++
Sbjct: 296 NYDIPTHSKDYIHRVGRTARAGRSGKSVTLVTQYDVELVLRIEQVIGKKME 346
>gi|188581754|ref|YP_001925199.1| DEAD/DEAH box helicase [Methylobacterium populi BJ001]
gi|179345252|gb|ACB80664.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
BJ001]
Length = 506
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 148/356 (41%), Positives = 216/356 (60%), Gaps = 6/356 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L++P+LRA E GY PTPIQA +P A+ GRD+CG A TG+GKTAAFALP L RL
Sbjct: 6 DFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHRLS 65
Query: 62 YRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
+R P RVL+L+PTRELA Q+ + +V GG++ QE A+
Sbjct: 66 LENRRAPRRGCRVLVLSPTRELASQIAESFSDYGRHLPYTNTVVFGGVNINRQERAIAPG 125
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
DI+VATPGR+ID L + ++ LD + +L+LDEAD++L+LGF + +V++ P RRQ++
Sbjct: 126 VDILVATPGRLID-LVDRRALTLDGVEILVLDEADQMLDLGFIHALKRIVKMLPARRQSL 184
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
FSAT+ +++ L LT P++++ P A + ++V+ ++A+L +
Sbjct: 185 FFSATMPKNIAGLADQYLTNPVQVAVTPVATTAERVDQQVIFCH---TGAKQALLNHVLR 241
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+V++F+ TK A R+ A + A +HGN +Q QR AL FR L+A
Sbjct: 242 DPKIERVLVFTRTKHGADRVVRGLDKAGIVGAAIHGNKSQPQRERALAAFRDGSCRVLVA 301
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
TD+AARG+D+ GV V+NY P SYVHR+GRTARAG EG A++F D +R+ L
Sbjct: 302 TDIAARGIDVEGVTHVVNYDLPNVPESYVHRIGRTARAGAEGMAISFCNDEERAYL 357
>gi|338535344|ref|YP_004668678.1| putative ATP-dependent RNA helicase RhlE [Myxococcus fulvus HW-1]
gi|337261440|gb|AEI67600.1| putative ATP-dependent RNA helicase RhlE [Myxococcus fulvus HW-1]
Length = 516
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 151/362 (41%), Positives = 220/362 (60%), Gaps = 12/362 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L LLRA +A GY+ PTPIQ IP ALTGRD+ G A TG+GKTAAFALP L+RL
Sbjct: 5 ELQLHDTLLRAVKAEGYTTPTPIQQKAIPHALTGRDVLGVAQTGTGKTAAFALPILQRLS 64
Query: 62 YRPKRIPA-----IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 116
+ PA +R L+LTPTRELA QV + + +R ++ GG+ Q AL
Sbjct: 65 ---AKAPAGGARPVRCLVLTPTRELAGQVGDSFQTYGKGLPLRHAVIFGGVGQNPQVQAL 121
Query: 117 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 176
R+ D++VATPGR++D + V L L V +LDEADR+L++GF ++ +++ P +R
Sbjct: 122 RNGVDVLVATPGRLLDLMEQGF-VSLRSLEVFVLDEADRMLDMGFIHDVRRVIKALPPKR 180
Query: 177 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 236
QT+ FSATL D+ +L + LT P+R+ P++ T++++V + R + + +L
Sbjct: 181 QTLFFSATLPPDIVDLARSILTDPIRVEVSPASSTAETVSQQVYFVEREQ---KRGLLTH 237
Query: 237 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 296
L + S+ ++F+ TK A+R+ A + +A +HGN +Q R AL+ FR +
Sbjct: 238 LLKEGNISRALVFTRTKHGANRVAKQLEGAGVSSAAIHGNKSQNARERALDEFRSGTLRV 297
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 356
L+ATD+AARG+DI G+ V+NY P YVHR+GRT RAG G AV+F +R+ L+
Sbjct: 298 LVATDIAARGIDIDGLSYVVNYDLPNVPEQYVHRIGRTGRAGASGTAVSFCDAEERAYLR 357
Query: 357 AI 358
I
Sbjct: 358 DI 359
>gi|183222181|ref|YP_001840177.1| ATP-dependent RNA helicase RhlE [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189912238|ref|YP_001963793.1| superfamily II DNA and RNA helicase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167776914|gb|ABZ95215.1| Superfamily II DNA and RNA helicase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167780603|gb|ABZ98901.1| ATP-dependent RNA helicase RhlE [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 471
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 149/364 (40%), Positives = 216/364 (59%), Gaps = 6/364 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L R + +A GY+KPTPIQ IPL L D+ G A TG+GKTAAFALP + L+
Sbjct: 10 DLKLDRYIQKAVAETGYTKPTPIQIQAIPLLLDNHDLLGCAQTGTGKTAAFALPMIHNLI 69
Query: 62 -YRPKRIP-AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
R K P R L+L PTRELA+QVH ++T IR ++ GG+ Q A+ S
Sbjct: 70 STRAKPNPKQPRSLVLVPTRELAIQVHESFVLYGKYTQIRTAVIFGGVGQNPQAKAIASG 129
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
D+++ATPGR++D L N V L +L + +LDEADR+L++GF +I +++ PKRRQ +
Sbjct: 130 LDVLIATPGRLVD-LMNQNLVSLKNLEIFVLDEADRMLDMGFIHDIRKIISYLPKRRQNL 188
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
FSAT+ ++++L L +P+R+ P + +++ V+ + N +LL L
Sbjct: 189 FFSATMPPEIEKLANSILVEPIRIDVTPVSSTVELISQSVMYTELADKKN---LLLHLFK 245
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
K IIF+ TK A+++ L + +K +HGN +Q+ R ALE FR L+A
Sbjct: 246 DKNFKKTIIFTKTKHGANKISELLNKSGIKTDVIHGNKSQSARQRALEDFRSGKNRALVA 305
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TD+AARG+DI + VINY P +YVHR+GRTARAG+ G A+ ++RSL+K I
Sbjct: 306 TDLAARGIDIDDITHVINYEIPYVPETYVHRIGRTARAGKNGIAIAIAEADERSLIKDIE 365
Query: 360 KRAG 363
K G
Sbjct: 366 KVIG 369
>gi|388455396|ref|ZP_10137691.1| ATP-dependent RNA helicase RhlE [Fluoribacter dumoffii Tex-KL]
Length = 461
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 151/367 (41%), Positives = 223/367 (60%), Gaps = 7/367 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L PLL++ E LGY P+PIQ IP+ L G+D+ SA TG+GKTA+F LP L L
Sbjct: 45 LGLIPPLLQSIEELGYKDPSPIQTKAIPIVLAGKDVLASAQTGTGKTASFVLPVLHMLSA 104
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + RVLILTPTRELA QVH I + ++ +R +V GG+ Q LRS +
Sbjct: 105 KPRAKSNRTRVLILTPTRELASQVHESIREYGRYLSLRSAVVFGGVKINPQMMKLRSGVE 164
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++D L ++ D + LILDEADR+L++GF +I ++ PK RQ +LF
Sbjct: 165 LLVATPGRLLD-LFQQRAIQFDQVDTLILDEADRMLDMGFIHDIRRIINCLPKNRQNLLF 223
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS-LCSK 240
SAT T+++ +L+K L +P+ + P + + + V + + +Q+A LLS L K
Sbjct: 224 SATFTDEIRKLVKTILNEPVAIDVTPRNTTVAKIKQTVHPVDK----SQKAALLSHLIHK 279
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+ ++FS TK A++L A + AA HGN +Q+QR + LE F+ + L+AT
Sbjct: 280 NKWGQTLVFSRTKHGANKLVKQLAEAQIYAAAFHGNKSQSQRTKTLEEFKSGELHILVAT 339
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARG+DI + V+N+ P+ YVHR+GRT RAG G AV+ V+ ++ + L+AI K
Sbjct: 340 DIAARGIDIEQLPCVVNFDLPQVAEDYVHRIGRTGRAGAPGLAVSLVSADEINQLQAIEK 399
Query: 361 RAGSKLK 367
KL
Sbjct: 400 LIQHKLN 406
>gi|336373869|gb|EGO02207.1| hypothetical protein SERLA73DRAFT_178026 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386778|gb|EGO27924.1| hypothetical protein SERLADRAFT_462194 [Serpula lacrymans var.
lacrymans S7.9]
Length = 449
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 156/357 (43%), Positives = 213/357 (59%), Gaps = 8/357 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L LL+A E + + PT IQ IP AL G+DI G A TGSGKTAAFALP L++L
Sbjct: 20 LGLIDSLLQALEQVNHKVPTDIQTEVIPHALEGKDIIGVASTGSGKTAAFALPILQKLWE 79
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
PK + A +L PTRELA Q+ E + +RC ++VGG+ T Q AL P +
Sbjct: 80 EPKGLFAC---VLAPTRELAYQISQQFESLGSDMGVRCAVIVGGVPTVPQAVALAKKPHV 136
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
VVATPGR++ HL+ + L +L L+LDEADRLL++ F I +++++ PK+R T LFS
Sbjct: 137 VVATPGRLLWHLQETKGFGLANLKFLVLDEADRLLDMDFGQVIDDILKVIPKQRTTYLFS 196
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSKT 241
AT+T V +L + SL P+R+ + STL + + I + ++VN L+ L +
Sbjct: 197 ATMTSKVAKLQRASLKNPVRVEVAGKYQTVSTLLQYYLFIPLKDKDVN----LVYLVNAL 252
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ +IIF+ T A RL I+ A LHG L+Q+QRL AL F+ L+ATD
Sbjct: 253 AQNSIIIFTRTVHDAARLTIVLRTLGFSAVPLHGQLSQSQRLGALAKFKSGGRKILVATD 312
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
VA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++T VT D L++ I
Sbjct: 313 VASRGLDIPSVDIVINFDIPTHSKDYIHRVGRTARAGRSGKSITLVTQYDVELVQRI 369
>gi|407067967|ref|ZP_11098805.1| ATP-dependent RNA helicase [Vibrio cyclitrophicus ZF14]
Length = 538
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 142/346 (41%), Positives = 208/346 (60%), Gaps = 5/346 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A EA GY KP+PIQ +P LTG+D+ +A TG+GKTA F LP LE L
Sbjct: 6 LGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILEMLSK 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ R +R L+LTPTRELA QV+ + K + +V GG+ Q LR D
Sbjct: 66 GPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKLRKGSD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++D L N +V D L +L+LDEADR+L++GF +I +++ PK+RQ +LF
Sbjct: 126 VLVATPGRLLD-LYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQNLLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++D+ L K + P+ +S P+ T+ + + + + + + A+L L
Sbjct: 185 SATFSDDIRSLAKGLVNNPVEISVSPANSTAKTVEQSIYPVDKKK---KSAMLAKLIKDN 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++FS TK A++L + AA +HGN +Q R +ALE F+ V L+ATD
Sbjct: 242 DWRQVLVFSKTKHGANKLARFLEEQDITAAPIHGNKSQGARTKALENFKTGKVRVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 347
+AARG+DI + V+N+ P YVHR+GRT RAG G A++ V
Sbjct: 302 IAARGIDIPQLPQVVNFDLPHVSEDYVHRIGRTGRAGEVGKAISLV 347
>gi|212526914|ref|XP_002143614.1| ATP-dependent RNA helicase , putative [Talaromyces marneffei ATCC
18224]
gi|210073012|gb|EEA27099.1| ATP-dependent RNA helicase , putative [Talaromyces marneffei ATCC
18224]
Length = 474
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 152/365 (41%), Positives = 215/365 (58%), Gaps = 5/365 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L L ACE LGY PT IQA IPLAL RD+ G A TGSGKTAAFALP L+ L+
Sbjct: 49 DLGLIPQLCEACETLGYKAPTAIQAESIPLALQNRDLIGLAETGSGKTAAFALPILQALM 108
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ L+L PTRELA Q+ E + +R ++VGG+ Q A+ P
Sbjct: 109 DKPQPFFG---LVLAPTRELAYQISEAFEALGSTISVRSVVLVGGMDMVPQAIAIGKRPH 165
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL N+ L L L++DEADRLL++ F I +++++ P+ R+T LF
Sbjct: 166 IIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDMDFGPIIDKILKVLPRERRTFLF 225
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++ V+ L + SL+ PLR+S S+ + T++ + + +++ L+ L ++
Sbjct: 226 SATMSSKVESLQRASLSNPLRVSV--SSNKYQTVSTLLQYYMFIPHKHKDVHLIWLLNEH 283
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
IIF+ T +RL +L A LHG L+Q+ RL ++ FR + LIATD
Sbjct: 284 IGQTTIIFTRTIHETNRLALLTRFLGFSAIALHGQLSQSSRLASISKFRSKTRSILIATD 343
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V V+NY D ++VHR+GRTARAG+ G A++ VT D + I K
Sbjct: 344 VAARGLDIPSVDLVLNYDLAADSKTHVHRIGRTARAGKSGKAISLVTQYDVEVWLRIEKA 403
Query: 362 AGSKL 366
KL
Sbjct: 404 LDKKL 408
>gi|449279156|gb|EMC86802.1| putative ATP-dependent RNA helicase DDX47, partial [Columba livia]
Length = 453
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 148/376 (39%), Positives = 217/376 (57%), Gaps = 8/376 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG+ PT IQ IP+AL GRDI G A TGSGKT AFALP L+ LL
Sbjct: 30 DLGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPILQALL 89
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + + ++VGG+ Q AL P
Sbjct: 90 ETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVHTTVIVGGIDAMSQSLALAKKPH 146
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR++DHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 147 VIIATPGRLVDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 206
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 207 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSYLVHILNELAGN 266
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q +RL AL F+ + L+AT
Sbjct: 267 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGALNKFKAKARSILLAT 322
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++TFVT D L + I
Sbjct: 323 DVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEH 382
Query: 361 RAGSKLKSRIVAEQSI 376
G KL + + E+ +
Sbjct: 383 LIGKKLPAFPMQEEEV 398
>gi|398925961|ref|ZP_10662200.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM48]
gi|398171555|gb|EJM59457.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM48]
Length = 446
Score = 275 bits (702), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 152/373 (40%), Positives = 223/373 (59%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 QFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +PD
Sbjct: 64 GPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV CP R+QTMLF
Sbjct: 124 ILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E+I L P L + ++ T ++++ + ++E ++ L +
Sbjct: 183 SATTGGSGLREMIAKVLNNPEHLQLNAVSQLNDTTRQQIITADHNQ--HKEQIVNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+AT
Sbjct: 241 ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I +
Sbjct: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQSFERRTIKE 373
>gi|167644899|ref|YP_001682562.1| DEAD/DEAH box helicase [Caulobacter sp. K31]
gi|167347329|gb|ABZ70064.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
Length = 479
Score = 275 bits (702), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 149/361 (41%), Positives = 214/361 (59%), Gaps = 6/361 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L++PLL+A GY+ PTPIQA IPL ++GRD+ G A TG+GKTAAFALP L RL
Sbjct: 6 DLGLAKPLLKALTDKGYTVPTPIQAQAIPLVMSGRDLLGIAQTGTGKTAAFALPILHRLA 65
Query: 62 YRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
K P R L+L+PTRELA Q+ + + + GG+ Q AL +
Sbjct: 66 EDKKPAPRRGFRCLVLSPTRELATQIAESFRDYGKHMGLTVATIFGGVKYGPQMKALAAG 125
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
D+VVATPGR++DHL S L+ + + +LDEAD++L+LGF I ++ PK RQ +
Sbjct: 126 VDVVVATPGRLMDHL-GEKSAHLNGVEIFVLDEADQMLDLGFVVPIRKIASQLPKERQNL 184
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
FSAT+ ++ +L L P +++ PSA + + ++ I R + +L L +
Sbjct: 185 FFSATMPSEIGKLAGELLKNPAQVAITPSATTVERIDQSLIFIEAQR---KRPLLAELLA 241
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+ I+F+ TK+ A R+ + ++AA +HG+ TQ QR AL F+ V LIA
Sbjct: 242 DKSVERSIVFTRTKRGADRVAKYLVASGIEAAAIHGDKTQGQRERALAAFKAGQVKALIA 301
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TD+AARG+D+ V V NY P SYVHR+GRTAR G+EG A++F D++R+LLK I
Sbjct: 302 TDIAARGIDVNDVSHVFNYELPNVPESYVHRIGRTARKGKEGIAISFCADDERNLLKDIQ 361
Query: 360 K 360
K
Sbjct: 362 K 362
>gi|415909527|ref|ZP_11553150.1| ATP-dependent RNA helicase [Herbaspirillum frisingense GSF30]
gi|407762572|gb|EKF71396.1| ATP-dependent RNA helicase [Herbaspirillum frisingense GSF30]
Length = 493
Score = 275 bits (702), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 147/365 (40%), Positives = 217/365 (59%), Gaps = 11/365 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ LS +L+A GY PTPIQA IP+ L GRD+ G+A TG+GKTA F+LP ++RLL
Sbjct: 20 DFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQRLL 79
Query: 62 YR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
P R P +R LILTPTRELA QV + +FT +R +V GG+ Q
Sbjct: 80 QHASHSASPARHP-VRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDMSPQTAI 138
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR+ +IV+ATPGR++DH++ +V+L +L++DEADR+L++GF ++ ++ L PK+
Sbjct: 139 LRAGVEIVIATPGRLLDHVQQK-TVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQ 197
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQ +LFSAT + ++ +L P+ + S +T+ + ++ E + +
Sbjct: 198 RQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYKVD---EAAKADAVS 254
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
+ + +VI+FS TK A RL +KA+ +HG+ TQ +R+ ALE F++ ++
Sbjct: 255 FIIRQRELKQVIVFSNTKIGASRLARTLLAEGVKASAIHGDKTQGERMAALEAFKQGQIE 314
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARGLDI + VINY P + YVHR+GRT RAG G A++ D D LL
Sbjct: 315 VLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDKDDRLL 374
Query: 356 KAIAK 360
I K
Sbjct: 375 TDIEK 379
>gi|395798906|ref|ZP_10478189.1| DEAD/DEAH box helicase [Pseudomonas sp. Ag1]
gi|421139467|ref|ZP_15599506.1| ATP-dependent RNA helicase SrmB [Pseudomonas fluorescens BBc6R8]
gi|395337140|gb|EJF68998.1| DEAD/DEAH box helicase [Pseudomonas sp. Ag1]
gi|404509383|gb|EKA23314.1| ATP-dependent RNA helicase SrmB [Pseudomonas fluorescens BBc6R8]
Length = 448
Score = 275 bits (702), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 152/366 (41%), Positives = 221/366 (60%), Gaps = 4/366 (1%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 68
LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+ K
Sbjct: 11 LLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPILNRLIGPAKVRV 70
Query: 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 128
+I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +PDI++ TPG
Sbjct: 71 SIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPDILIGTPG 130
Query: 129 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL-TE 187
RMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV+ C R+QTMLFSAT
Sbjct: 131 RMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVQECVNRQQTMLFSATTGGS 189
Query: 188 DVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVI 247
+ E++ L P L + + ST ++++ V++E +L L + K I
Sbjct: 190 TLREMVAKVLNNPEHLQVNNVSDLNSTTRQQIITAD--HNVHKEQILNWLLANETYQKAI 247
Query: 248 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 307
+F+ T+ A R+ KA LHG Q R A++ ++ V L+ATDVAARGL
Sbjct: 248 VFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVATDVAARGL 307
Query: 308 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 367
D+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I + +
Sbjct: 308 DVDGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIERYLKQSFE 367
Query: 368 SRIVAE 373
R + E
Sbjct: 368 RRTIKE 373
>gi|328853252|gb|EGG02392.1| hypothetical protein MELLADRAFT_75483 [Melampsora larici-populina
98AG31]
Length = 486
Score = 275 bits (702), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 209/365 (57%), Gaps = 6/365 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L PL +ACE+L + PTPIQ IP AL +DI G A TGSGKTAAFALP L+ L
Sbjct: 64 LGLIEPLCKACESLNFKTPTPIQTESIPYALQNKDIIGLAQTGSGKTAAFALPVLQSLWD 123
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P A +L PTRELA Q+ + + ++ ++VGG+ Q AL P +
Sbjct: 124 SPS---AFFACVLAPTRELAYQISQQFDALGSTIGVKTVVIVGGMDMMSQAIALSKRPHV 180
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+VATPGR+ DHL ++ L +L LI+DEADRLL++ F I +++++ PK R+T LFS
Sbjct: 181 IVATPGRLHDHLEHTKGFSLRNLQFLIMDEADRLLDMDFGPVIDKILKVIPKERKTYLFS 240
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T V +L + SL P+++ S L + + + +++ L+ L ++
Sbjct: 241 ATMTTKVAKLQRASLNNPVKVEVSAKYDTVSALVQTYLFLPFK---HKDTYLVYLANELS 297
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+I+F+ T A RL ++ A LHG L+Q+ RL AL F+ L+ATDV
Sbjct: 298 GKSLIVFTRTVHDASRLSLILRTLGFPAVPLHGQLSQSARLGALNKFKSGDQSLLVATDV 357
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI V VIN+ P + Y+HRVGRTARAGR G ++T VT D LL+ I
Sbjct: 358 ASRGLDIPAVDCVINFDLPTNSKDYIHRVGRTARAGRSGKSITLVTQYDVELLQRIEGVI 417
Query: 363 GSKLK 367
G K+
Sbjct: 418 GKKMN 422
>gi|310801624|gb|EFQ36517.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 480
Score = 275 bits (702), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 153/365 (41%), Positives = 212/365 (58%), Gaps = 7/365 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC LGY+KPTPIQA IP AL RDI G A TGSGKTAAFALP ++ LL
Sbjct: 56 DLGVADSLCDACANLGYTKPTPIQAQSIPHALANRDIIGLAETGSGKTAAFALPVIQALL 115
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ A L+L PTRELA Q+ E + +R ++VGGL Q AL P
Sbjct: 116 EKPQ---AFFGLVLAPTRELAAQIGQQFEALGSLISLRTAVIVGGLDMVAQAIALGKKPH 172
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++DHL + L L L++DEADRLL++ F I ++++ P+ R+T LF
Sbjct: 173 VIVATPGRLVDHLEKTKGFSLRSLKYLVMDEADRLLDMDFGPSIDKILKFIPRERRTFLF 232
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT++ ++ L + SL P+R+S + + STL + + I ++ L+ L ++
Sbjct: 233 SATMSSKIESLQRASLRDPVRVSISSNKYQTVSTLLQYYLFIPHQL---KDTYLVYLANE 289
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K+++F+ T RL IL A LHG L Q RL AL FR L+AT
Sbjct: 290 FAGKKLVVFTRTVSETQRLAILLRTLGFGAIPLHGQLNQTARLGALNKFRAGERSILVAT 349
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI V VIN+ +D ++VHR+GRTARAG+ G A++ VT D + I
Sbjct: 350 DVAARGLDIPLVDVVINHDLAQDSKTHVHRIGRTARAGKSGIALSLVTQYDLEIWLRIEA 409
Query: 361 RAGSK 365
G K
Sbjct: 410 ALGKK 414
>gi|340719056|ref|XP_003397973.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Bombus
terrestris]
Length = 458
Score = 275 bits (702), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 148/366 (40%), Positives = 213/366 (58%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L + CE L + PT IQ IPL L G+DI G A TGSGKTAAFA+P L+ LL
Sbjct: 27 DLGIVDTLCKTCEDLKWKSPTKIQCEAIPLTLEGKDIIGLAETGSGKTAAFAIPILQALL 86
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A LILTPTRELA Q+ E + ++C ++VGG+ Q L P
Sbjct: 87 ENPQRYFA---LILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMMSQALLLAKKPH 143
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++DHL N+ +L L L++DEADR+L + F E+ +++R+ P+ R+T+LF
Sbjct: 144 ILIATPGRLVDHLENTKGFNLRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERRTLLF 203
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSK 240
SAT+T+ V +L + SL P+++ + L + V I + ++V +L L
Sbjct: 204 SATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYVFIPVKFKDVYLVHILNELAGN 263
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q +R+ AL F+ ++ LI+T
Sbjct: 264 SF----MIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSILIST 319
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++TFVT D L + I +
Sbjct: 320 DVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQ 379
Query: 361 RAGSKL 366
+L
Sbjct: 380 LISKQL 385
>gi|195443116|ref|XP_002069285.1| GK21047 [Drosophila willistoni]
gi|194165370|gb|EDW80271.1| GK21047 [Drosophila willistoni]
Length = 507
Score = 275 bits (702), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 146/366 (39%), Positives = 214/366 (58%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ L +ACE L + P+ IQ IP+AL G+D+ G A TGSGKT AFALP L+ LL
Sbjct: 59 DLGLNETLCQACEELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFALPILQALL 118
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A L+LTPTRELA Q+ E + I+CC+VVGG+ Q L P
Sbjct: 119 ENPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 175
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++DHL N +L + L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 176 IIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 235
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSK 240
SAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 236 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGN 295
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T + ++ L A LHG ++Q +RL AL F+ ++ LI+T
Sbjct: 296 SF----MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILIST 351
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+T V+ D L + I
Sbjct: 352 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGRAITMVSQYDIELYQRIEH 411
Query: 361 RAGSKL 366
G +L
Sbjct: 412 LLGKQL 417
>gi|56119032|ref|NP_001007854.1| probable ATP-dependent RNA helicase DDX47 [Gallus gallus]
gi|53130308|emb|CAG31483.1| hypothetical protein RCJMB04_6o10 [Gallus gallus]
Length = 453
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 154/412 (37%), Positives = 236/412 (57%), Gaps = 8/412 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L ++ L AC+ LG+ PT IQ IP+AL GRDI G A TGSGKT AFALP L+ LL
Sbjct: 29 DLGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPILQALL 88
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+LTPTRELA Q+ E + + ++VGG+ + Q AL P
Sbjct: 89 DAPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPH 145
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++DHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 146 IIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 205
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 206 SATMTKQVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSYLVYILNELAGN 265
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q +RL +L F+ + L+AT
Sbjct: 266 SF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLAT 321
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++TFVT D L + I
Sbjct: 322 DVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEH 381
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATK 412
G KL + + E+ + ++ + + + L+E+ E++ R A+ + T+
Sbjct: 382 LIGKKLPAFPMQEEEVMMLTERVAEAQRFARMELREQGEKKRSRNADDDDTE 433
>gi|209808966|ref|YP_002264504.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
[Aliivibrio salmonicida LFI1238]
gi|208010528|emb|CAQ80896.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
[Aliivibrio salmonicida LFI1238]
Length = 495
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 148/357 (41%), Positives = 214/357 (59%), Gaps = 5/357 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A EA GYS P+PIQ IP + G+D+ +A TG+GKTA F LP LERL
Sbjct: 6 LGLSAPILKAVEAQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLERLSK 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K + +R LILTPTRELA QVH +EK + + +V GG+ Q LR D
Sbjct: 66 GQKLKFNQVRALILTPTRELAAQVHESVEKYSVNLPLTSDVVFGGVKANPQMQRLRKGVD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++D L N ++ D L +L+LDEADR+L++GF +I +++ PK RQ +LF
Sbjct: 126 VLVATPGRLLD-LANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILNKLPKNRQNLLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++++ +L K + P+ +S T+ + V + + ++ VL L
Sbjct: 185 SATFSDEIRQLAKGLVNNPVEISVATRNTTAETVEQSVYVVDKTKKAR---VLTKLIKDN 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++FS TK A+RL + +A +HGN +Q R +AL F+ V L+ATD
Sbjct: 242 DWKQVLVFSKTKHGANRLAKTLEEKGISSAAIHGNKSQGARTKALANFKSGQVRVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
+AARGLDI + VIN P+ YVHR+GRT RAG G A++FV++++ S L AI
Sbjct: 302 IAARGLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSEDEASELFAI 358
>gi|441477761|dbj|BAM75193.1| vasa-like gene-2, partial [Pinctada fucata]
Length = 451
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 149/371 (40%), Positives = 216/371 (58%), Gaps = 8/371 (2%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 68
L ACE L + P+ IQ IP+AL G DI G A TGSGKT AFA+P L++LL P+R+
Sbjct: 33 LCEACERLKWKSPSKIQREAIPVALQGSDIIGLAETGSGKTGAFAIPILQKLLDSPQRLY 92
Query: 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 128
A LILTPTRELA Q+ E + ++C +VVGG+ Q L P I++ATPG
Sbjct: 93 A---LILTPTRELAFQISEQFEALGSAIGVKCAVVVGGIDMMSQSLMLAKKPHIIIATPG 149
Query: 129 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 188
R+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R T L+SAT+T+
Sbjct: 150 RLIDHLENTKGFNLRALKFLVMDEADRILNMDFEQEVDKILKVIPRERSTYLYSATMTKK 209
Query: 189 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSKTFTSKVI 247
V +L + SL P+++ + L + + + + ++V +VL L +F +
Sbjct: 210 VAKLQRASLQNPVKVEVSSKYQTVDKLQQYYLFVPAKFKDVYLVSVLNELAGNSF----M 265
Query: 248 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 307
+F+ T R ++ L A LHG ++Q++RL +L F+ + LIATDVA+RGL
Sbjct: 266 VFTSTCANTQRTALMLRNLGLTAIPLHGQMSQSKRLGSLNKFKSKSRSILIATDVASRGL 325
Query: 308 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 367
DI V VIN+ P Y+HRVGRTARAGR G A+TFV+ D L + I G KL
Sbjct: 326 DIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELYQRIEHLIGKKLP 385
Query: 368 SRIVAEQSITK 378
EQ + +
Sbjct: 386 LYKTEEQEVMQ 396
>gi|398995582|ref|ZP_10698462.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM21]
gi|398129619|gb|EJM18978.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM21]
Length = 448
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 153/373 (41%), Positives = 223/373 (59%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 QFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILHRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ AQFT I+ L+ GG K+Q LR +PD
Sbjct: 64 GPAKVRVSIKTLILLPTRELAQQTIKEVERFAQFTFIKSGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTMLF
Sbjct: 124 ILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVAECTNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + +++ L P L + + +T ++++ V++E +L L +
Sbjct: 183 SATTGGSGLRDMVAKVLNNPEHLQVNNVSDLNATTRQQIITAD--HNVHKEQILNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ A R+ KA LHG+ Q R A++ ++ V L+AT
Sbjct: 241 ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGDKDQKDRKLAIDRLKQGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG EG A++ + D +L+ +I +
Sbjct: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNEGLAISLICHGDWNLMSSIER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQSFERRTIKE 373
>gi|254480404|ref|ZP_05093651.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
gi|214038987|gb|EEB79647.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
Length = 429
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 152/372 (40%), Positives = 224/372 (60%), Gaps = 14/372 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L LS LLRA E GY + TPIQ IPL L G+D+ A TG+GKTA F LP L+RL
Sbjct: 5 DLGLSAELLRAVETQGYDEATPIQQQAIPLVLKGKDVLAGAQTGTGKTAGFTLPVLQRLQ 64
Query: 62 YR----PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 117
KR P RVL+LTPTRELA QVH + +F R ++ GG+S Q+ L
Sbjct: 65 SSHAEGQKRHP--RVLVLTPTRELAAQVHESVRDYGRFLPFRSAVIFGGVSINPQKQKLI 122
Query: 118 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 177
D+VVATPGR++DHL+ S+DL + VL+LDEADR+L++GF +I +++ PK+RQ
Sbjct: 123 KGVDVVVATPGRLLDHLQQR-SIDLSKVEVLVLDEADRMLDMGFIRDIRKVLNAIPKKRQ 181
Query: 178 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI--RRMREVNQEAVLL 235
T+LFSAT ++++ L L +P + P +++ V + +R RE+ + +
Sbjct: 182 TLLFSATFSKEIKSLAAEFLHQPTEIQVTPQNTAAELVSQIVYPVDKKRKRELLSQKI-- 239
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
+ +V++F+ TK A++L G + +A +HGN +Q R +AL F++ V
Sbjct: 240 ---GEENWQQVLVFTRTKHGANKLSEQLGKDGITSAAIHGNKSQGARTKALANFKQGSVR 296
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATD+AARG+DI + V+N+ P YVHR+GRTARAG+EG+AV+ V ++ LL
Sbjct: 297 VLVATDIAARGIDIDKLPHVVNFELPNVAEDYVHRIGRTARAGQEGHAVSLVCVDELKLL 356
Query: 356 KAIAKRAGSKLK 367
I K G+ ++
Sbjct: 357 SDIEKLLGTSIE 368
>gi|113971464|ref|YP_735257.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-4]
gi|113886148|gb|ABI40200.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
Length = 549
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 148/381 (38%), Positives = 227/381 (59%), Gaps = 10/381 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+ +A GY P+PIQA IP LTG+D+ +A TG+GKTA F LP LE L
Sbjct: 6 LGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLELLSK 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K ++ IR L+LTPTRELA QV +E ++ +R +V GG+ Q LR D
Sbjct: 66 GNKAKVGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKLRHGVD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++D L +V + L VL+LDEADR+L++GF +I +++ + P +RQ ++F
Sbjct: 126 VLVATPGRLLD-LEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKKILAMLPAKRQNLMF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++++ EL K + +P+ +S P +T+ + + + + ++ A+L+ L +
Sbjct: 185 SATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQK---SALLIQLIKQE 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++FS TK A+RL A + AA +HGN +Q R +AL F+ V L+ATD
Sbjct: 242 NWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V+ + LL+ I
Sbjct: 302 IAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGALGQAVSLVSSEETKLLRDI--- 358
Query: 362 AGSKLKSRIVAEQSITKWSKI 382
+L +R++ Q + +S +
Sbjct: 359 --ERLINRVLERQEVEGFSPV 377
>gi|442762935|gb|JAA73626.1| Putative atp-dependent rna helicase, partial [Ixodes ricinus]
Length = 429
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 151/375 (40%), Positives = 214/375 (57%), Gaps = 8/375 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L + L ACE L + PT IQ IPLAL G+D+ G A TGSGKT +FALP L+ LL
Sbjct: 30 LGIVDVLCEACEQLKWKSPTKIQKESIPLALQGKDVIGLAETGSGKTGSFALPILQALLE 89
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P+R+ A L+LTPTRELA Q+ E + ++C +VVGG+ Q L P +
Sbjct: 90 TPQRLFA---LVLTPTRELAFQISEQFEALGAGIGVKCAVVVGGIDMMTQALTLAKKPHV 146
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V+ATPGR++DHL N+ L L L++DEADR+L + F E+ +++R+ P+ R T L+S
Sbjct: 147 VIATPGRLVDHLENTKGFSLKALKYLVMDEADRILNMDFEEEVDKILRVIPRERHTYLYS 206
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSKT 241
AT+T+ V +L + SL P+++ + L + + I + ++V +L L +
Sbjct: 207 ATMTKKVQKLQRASLKDPVKVEVSSKYQTVEKLMQYYLFIPAKFKDVYLVHLLNELAGNS 266
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F ++F T R +L A LHG + QA+RL AL F+ ++ LIATD
Sbjct: 267 F----MVFCSTCSNTQRTALLLRNLGFTAIPLHGQMGQAKRLGALNKFKSKNRSILIATD 322
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 323 VASRGLDIPHVDCVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRIEHL 382
Query: 362 AGSKLKSRIVAEQSI 376
G KL +E+ +
Sbjct: 383 IGKKLPLYQTSEEEV 397
>gi|117924939|ref|YP_865556.1| DEAD/DEAH box helicase [Magnetococcus marinus MC-1]
gi|117608695|gb|ABK44150.1| DEAD/DEAH box helicase domain protein [Magnetococcus marinus MC-1]
Length = 439
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 152/361 (42%), Positives = 222/361 (61%), Gaps = 8/361 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
LNL +PLL A GY+ PTPIQA IP L GRD+ G A TG+GKTAAFALP L +L
Sbjct: 7 LNLVKPLLNALTQAGYTTPTPIQAQAIPHLLAGRDLLGIAQTGTGKTAAFALPILNKLSQ 66
Query: 63 ---RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
RP A R LILTPTRELA Q+ + I + +V GG+ + Q AL
Sbjct: 67 IKGRPAP-NAPRALILTPTRELASQIGNSIAVYGKHVPTTHTVVFGGVGKQPQIRALSRG 125
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
DI+VATPGR++D L V LD + V +LDEADR+L++GF +I ++++ P +R T+
Sbjct: 126 VDILVATPGRLLD-LMGERHVRLDQIQVFVLDEADRMLDMGFIHDIRRIIKVIPAKRHTL 184
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
LFSAT+ +D+ EL + LT P ++ P + +T++V+ + + N+ ++L ++
Sbjct: 185 LFSATMPKDIAELAEGLLTNPAKVEVTPESTTVERITQKVLFVDKQ---NKRSLLKNVLE 241
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+V++F+ TK A+R+ + +A +HGN +Q+ R +AL+ FRK + L+A
Sbjct: 242 HESIEQVLVFTRTKHGANRVAEYLDKHRIASAAIHGNKSQSAREKALDGFRKGKLKVLVA 301
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TD+AARG+D+ G+ VIN+ P + SYVHR+GRTARAGR+G A++F +R L I
Sbjct: 302 TDIAARGIDVAGISHVINFDLPNESESYVHRIGRTARAGRDGNAISFCDAEERGYLLDIE 361
Query: 360 K 360
K
Sbjct: 362 K 362
>gi|120597666|ref|YP_962240.1| DEAD/DEAH box helicase [Shewanella sp. W3-18-1]
gi|120557759|gb|ABM23686.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
Length = 550
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 150/382 (39%), Positives = 229/382 (59%), Gaps = 12/382 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE LL
Sbjct: 17 LGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLE-LLS 75
Query: 63 RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+ ++ A +R L+LTPTRELA QV +E ++ +R +V GG+ Q LR
Sbjct: 76 KGQKAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKLRHGV 135
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D++VATPGR++D L N +V + L +L+LDEADR+L++GF +I +++ + PK+RQ ++
Sbjct: 136 DVLVATPGRLMD-LYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLM 194
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++++ EL K + P+ +S P +T+ + V + + + + A+L L +
Sbjct: 195 FSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQ---KSALLTQLIKQ 251
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++FS TK A+RL A +KAA +HGN +Q R +AL F+ V L+AT
Sbjct: 252 HDWQQVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVLVAT 311
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V+ + LL I
Sbjct: 312 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEIKLLNDI-- 369
Query: 361 RAGSKLKSRIVAEQSITKWSKI 382
+L +RI+ + + ++ +
Sbjct: 370 ---ERLINRILDREVVEGFNPV 388
>gi|350398997|ref|XP_003485378.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Bombus
impatiens]
Length = 453
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 146/366 (39%), Positives = 213/366 (58%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L + CE L + PT IQ IPL L G+D+ G A TGSGKTAAFA+P L+ LL
Sbjct: 22 DLGIVDTLCKTCEDLKWKSPTKIQCEAIPLTLEGKDVIGLAETGSGKTAAFAIPILQALL 81
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A LILTPTRELA Q+ E + ++C ++VGG+ Q L P
Sbjct: 82 ENPQRYFA---LILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMMSQALLLAKKPH 138
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++DHL N+ +L L L++DEADR+L + F E+ +++R+ P+ R+T+LF
Sbjct: 139 ILIATPGRLVDHLENTKGFNLRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERRTLLF 198
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSK 240
SAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 199 SATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGN 258
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T R +L A LHG ++Q +R+ AL F+ ++ LI+T
Sbjct: 259 SF----MIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSILIST 314
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++TFVT D L + I +
Sbjct: 315 DVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQ 374
Query: 361 RAGSKL 366
+L
Sbjct: 375 LISKQL 380
>gi|225718584|gb|ACO15138.1| Probable ATP-dependent RNA helicase DDX47 [Caligus clemensi]
Length = 470
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 158/368 (42%), Positives = 217/368 (58%), Gaps = 10/368 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ L ACE+ G+ P+ IQ IP+ALTGRD+ G A TGSGKT AFALP L+ LL
Sbjct: 34 DLGLTEVLCEACESQGWKTPSKIQKEAIPVALTGRDVIGLAETGSGKTGAFALPVLQALL 93
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+R+ A LILTPTRELA Q+ EK+ + I+C ++VGG+ Q L P
Sbjct: 94 EKPQRLFA---LILTPTRELAYQISETFEKLGKSIGIKCGVLVGGMDMMSQALVLGKKPH 150
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR--RQTM 179
I+VATPGR+IDH+ N+ DL L LI+DEADR+L + F E+ +++ P+ R+ M
Sbjct: 151 IIVATPGRLIDHMENTKGFDLRSLKYLIMDEADRILNMDFEIEVDKILSSLPRGEGRKNM 210
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLC 238
LFSAT+T+ V +L + SL P+R+ + L + + I + +E+ ++ L
Sbjct: 211 LFSATMTKKVAKLQRASLQNPVRVEVSSKYQTVDKLLQYYLFIPLKYKEMYLVHIINELA 270
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+F IIFS T +L +L A L+G ++Q +RL +L F+ + LI
Sbjct: 271 GNSF----IIFSSTCSGTLKLALLLRNLGFTAIPLNGQMSQNKRLASLNKFKTKSRSILI 326
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATDVA+RGLDI V VINY P Y+HRVGRTARAGR G A+TFV D L + I
Sbjct: 327 ATDVASRGLDIPHVDIVINYDIPTHSKDYIHRVGRTARAGRSGRAITFVCQYDVELYQRI 386
Query: 359 AKRAGSKL 366
G KL
Sbjct: 387 ETLIGKKL 394
>gi|77457664|ref|YP_347169.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens Pf0-1]
gi|77381667|gb|ABA73180.1| ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1]
Length = 446
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 152/373 (40%), Positives = 223/373 (59%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 QFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +PD
Sbjct: 64 GPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV CP R+QTMLF
Sbjct: 124 ILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E+I L P L + ++ T ++++ + ++E ++ L +
Sbjct: 183 SATTGGSGLREMIAKVLNNPEHLQLNAVSQLNDTTRQQIITADHNQ--HKEQIVNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+AT
Sbjct: 241 ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I +
Sbjct: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQSFERRTIKE 373
>gi|417950107|ref|ZP_12593235.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
gi|342807185|gb|EGU42381.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
Length = 551
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 141/346 (40%), Positives = 206/346 (59%), Gaps = 5/346 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A EA GY KP+PIQ +P LTG+D+ +A TG+GKTA F LP LE L
Sbjct: 6 LGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILELLSK 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ R +R L+LTPTRELA QV+ + K + +V GG+ Q LR D
Sbjct: 66 GPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSSVVFGGVKINPQMQKLRKGSD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++D L N +V D L +L+LDEADR+L++GF +I +++ PK+RQ +LF
Sbjct: 126 VLVATPGRLLD-LYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQNLLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++D+ L K + P+ +S P+ T+ + + + + R + +L L
Sbjct: 185 SATFSDDIRNLAKGLVNNPVEISVSPANSTAKTVEQSIYPVDKKR---KSPMLAKLIKDN 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++FS TK A++L + AA +HGN +Q R +ALE F+ V L+ATD
Sbjct: 242 DWRQVLVFSKTKHGANKLARFLDEQGITAAPIHGNKSQGARTKALENFKTGKVRVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 347
+AARG+DI + V+N+ P Y HR+GRT RAG G A++ V
Sbjct: 302 IAARGIDIPQLPQVVNFDLPHVSEDYAHRIGRTGRAGEVGKAISLV 347
>gi|336310213|ref|ZP_08565185.1| ATP-dependent RNA helicase RhlE [Shewanella sp. HN-41]
gi|335865943|gb|EGM70934.1| ATP-dependent RNA helicase RhlE [Shewanella sp. HN-41]
Length = 470
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 150/382 (39%), Positives = 230/382 (60%), Gaps = 12/382 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE LL
Sbjct: 6 LGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLE-LLS 64
Query: 63 RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+ +R A +R L+LTPTRELA QV +E ++ +R +V GG+ Q LR
Sbjct: 65 KGQRAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKLRHGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D++VATPGR++D L N +V + L +L+LDEADR+L++GF +I +++ + PK+RQ ++
Sbjct: 125 DVLVATPGRLMD-LYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLM 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++++ +L K + P+ +S P +T+ + V + + ++ A+L+ L +
Sbjct: 184 FSATFSDEIRQLAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQK---SALLIQLIKQ 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++FS TK A+RL A +KAA +HGN +Q R +AL F+ V L+AT
Sbjct: 241 QDWQQVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKTGQVRVLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V+ + LL I
Sbjct: 301 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEIKLLNDI-- 358
Query: 361 RAGSKLKSRIVAEQSITKWSKI 382
+L +R++ + + +S +
Sbjct: 359 ---ERLINRVLDREMVEGFSPV 377
>gi|281349896|gb|EFB25480.1| hypothetical protein PANDA_006406 [Ailuropoda melanoleuca]
Length = 383
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 149/359 (41%), Positives = 212/359 (59%), Gaps = 8/359 (2%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 68
L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL P+R+
Sbjct: 6 LCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLF 65
Query: 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 128
A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL P I++ATPG
Sbjct: 66 A---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPG 122
Query: 129 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 188
R+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LFSAT+T+
Sbjct: 123 RLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKK 182
Query: 189 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSKTFTSKVI 247
V +L + +L P++ + + L + + I + ++ +L L +F +
Sbjct: 183 VQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSF----M 238
Query: 248 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 307
IF T R +L A LHG ++Q++RL +L F+ + L+ATDVA+RGL
Sbjct: 239 IFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGL 298
Query: 308 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 366
DI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I G KL
Sbjct: 299 DIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKL 357
>gi|170046412|ref|XP_001850760.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
gi|167869183|gb|EDS32566.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
Length = 438
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 150/365 (41%), Positives = 213/365 (58%), Gaps = 8/365 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+ L L AC+AL + P+ IQ IPLAL G+D+ G A TGSGKT AFALP L+ LL
Sbjct: 1 MGLIDTLCEACKALKWKAPSKIQREAIPLALQGKDVIGLAETGSGKTGAFALPILQALLE 60
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P+R A+ ILTPTRELA Q+ E + ++CC++VGG+ Q L P I
Sbjct: 61 NPQRYFAV---ILTPTRELAYQISEQFEALGASIGVKCCVIVGGMDMVSQALQLARKPHI 117
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR++DHL N+ +L + L++DEADR+L L F E+ +++++ P+ R+T LFS
Sbjct: 118 IIATPGRLVDHLENTKGFNLKAVKYLVMDEADRILNLDFEVELDKILKVLPRERRTFLFS 177
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSKT 241
AT+T+ V +L + SL P+++ + L + V I + ++V +L L +
Sbjct: 178 ATMTKKVKKLERASLKDPVKVEVSSKYQTVEKLLQYYVFIPAKFKDVYLVHILNELAGNS 237
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F +IF T R ++ L A LHG ++Q +RL +L F+ + LI+TD
Sbjct: 238 F----MIFCSTCNNTVRTALMLRALGLAAVPLHGQMSQNKRLASLNKFKGKDRQILISTD 293
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V V+N+ P Y+HRVGRTARAGR G AVTFVT D L + I
Sbjct: 294 VASRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRAGKAVTFVTQYDVELYQRIEHL 353
Query: 362 AGSKL 366
G KL
Sbjct: 354 LGKKL 358
>gi|195401282|ref|XP_002059243.1| GJ16136 [Drosophila virilis]
gi|194156117|gb|EDW71301.1| GJ16136 [Drosophila virilis]
Length = 523
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 147/366 (40%), Positives = 214/366 (58%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ L +ACE L + P+ IQ IP+AL G+D+ G A TGSGKT AFALP L LL
Sbjct: 68 DLGLNDTLCKACEELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFALPILHALL 127
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A L+LTPTRELA Q+ E + I+CC+VVGG+ Q L P
Sbjct: 128 ENPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 184
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++DHL N +L + L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 185 IIIATPGRLVDHLENLKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 244
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSK 240
SAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 245 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVDQLQQYYIFIPVKYKDVYLVHILNELAGN 304
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T + ++ L A LHG ++Q +RL AL F+ ++ LI+T
Sbjct: 305 SF----MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILIST 360
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+T VT D L + I +
Sbjct: 361 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITMVTQYDIELYQRIEQ 420
Query: 361 RAGSKL 366
G +L
Sbjct: 421 LLGKQL 426
>gi|336115431|ref|YP_004570198.1| DEAD/DEAH box helicase [Bacillus coagulans 2-6]
gi|335368861|gb|AEH54812.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 2-6]
Length = 475
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 144/357 (40%), Positives = 215/357 (60%), Gaps = 7/357 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNLS +L+A + +G+ + +PIQAA IPL + G+DI G A TG+GKTAAF +P +E++
Sbjct: 6 ELNLSPAILKAVKRMGFEEASPIQAATIPLTMQGKDIIGQAQTGTGKTAAFGIPLIEKID 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+R + I I I+ PTRELA+QV + +I Q++ + V GG Q AL++ P
Sbjct: 66 HRSRNIQGI---IIAPTRELAIQVSEELYRIGQYSRVHVLAVYGGQDISRQIRALKNHPQ 122
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+V TPGR++DH+ ++ LD + L+LDEAD +L +GF +I ++ PK RQTMLF
Sbjct: 123 IIVGTPGRILDHIHRG-TLKLDHVHTLVLDEADEMLNMGFIDDIEAILSTVPKDRQTMLF 181
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ + + ++ + + P + ++ + ++++ + + + LL + S
Sbjct: 182 SATMPDPIRKIAERFMNNPELVRVKAKEMTVPSIEQYYIKVQEREKFDVLSRLLDVQSPD 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
I+F TK+ L L A +HG+L+QA+RL L F+ +D L+ATD
Sbjct: 242 LA---IVFGRTKRRVDELANALTLRGYLAEGIHGDLSQAKRLSVLRKFKDGKIDVLVATD 298
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
VAARGLDI GV V NY P+D SYVHR+GRT RAGREG A+TFVT + LK +
Sbjct: 299 VAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGREGMAMTFVTPREMGYLKTV 355
>gi|90414421|ref|ZP_01222398.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
3TCK]
gi|90324534|gb|EAS41090.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
3TCK]
Length = 464
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 146/357 (40%), Positives = 213/357 (59%), Gaps = 5/357 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L A GY P+PIQA IP + G+D+ +A TG+GKTA F LP LERL
Sbjct: 6 LGLSAPILEAVAKQGYETPSPIQAQAIPAVIEGKDVMAAAQTGTGKTAGFTLPVLERLSN 65
Query: 63 RPKRIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ P +R L+LTPTRELA QV + A+ + +V GG+ Q LR D
Sbjct: 66 GPRVKPNQVRALVLTPTRELAAQVAESVALYAKNLPLSSAVVFGGVKINPQMMRLRQGAD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++D L N +V D L VL+LDEADR+L++GF +I +L+ + PK+RQ +LF
Sbjct: 126 VLVATPGRLLD-LYNQRAVRFDQLEVLVLDEADRMLDMGFIRDIRKLLAVMPKQRQNLLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++++ +L K + P+ +S P T+ + + + + R+ N +L L +
Sbjct: 185 SATFSDEIRQLAKGLVNNPVEISVTPRNATAPTVKQWICPVDKSRKAN---LLTKLLKEN 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++F+ TK A+RL +KAA +HGN +Q R +AL F+ + L+ATD
Sbjct: 242 NWGQVLVFTKTKHGANRLTTHLEGRGIKAAAIHGNKSQGARTKALANFKSNEIQVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
+AARGLDI + V+N+ P YVHR+GRT RAG EG A++ V ++ L AI
Sbjct: 302 IAARGLDIEQLPQVVNFELPHVAEDYVHRIGRTGRAGCEGQAISLVCADEYKDLAAI 358
>gi|408480568|ref|ZP_11186787.1| ATP-dependent RNA helicase [Pseudomonas sp. R81]
Length = 448
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 153/373 (41%), Positives = 222/373 (59%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 QFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPVLNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ +QFT I+ ++ GG K+Q LR +PD
Sbjct: 64 GPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGIITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTMLF
Sbjct: 124 ILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVSECVNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E++ L P L + + +T +++V V++E +L L +
Sbjct: 183 SATTGGSTLREMVAKVLNNPEHLQVNNVSDLNATTRQQIVTAD--HNVHKEQILNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ AA R+ KA LHG Q R A++ + V L+AT
Sbjct: 241 ETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I +
Sbjct: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQSFERRTIKE 373
>gi|319944884|ref|ZP_08019146.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
gi|319741454|gb|EFV93879.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
Length = 489
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 155/360 (43%), Positives = 214/360 (59%), Gaps = 9/360 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L+ PLLRA +GY+ PTPIQA IP+ LTGRD+ +A TG+GKTA F LP L+RLL
Sbjct: 18 LGLADPLLRALADVGYTNPTPIQAKAIPVVLTGRDLLAAAQTGTGKTAGFTLPILQRLLD 77
Query: 63 RP--KRIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
P R P R LILTPTREL QV ++ A++T IR L+ GG+S Q ALR
Sbjct: 78 NPMQTRKPGRPRCLILTPTRELTAQVEESVKAYAKYTRIRSVLIFGGVSINPQIQALRQP 137
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
DI+VATPGR++DH++ +VDL + + +LDEADR+L++GF +I ++ P +RQ +
Sbjct: 138 VDILVATPGRLLDHVQQG-TVDLSGVEIFVLDEADRMLDMGFIHDIRRVIAKLPAKRQNL 196
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS-LC 238
LFSAT + ++ L L P + P +T +E V + + ++ LLS L
Sbjct: 197 LFSATFSPEIRSLAHGLLDNPAEVDVAPR----NTASELVAQSAHLVPKTRKRALLSYLI 252
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+V++F+ TK A+RL G ++A +HGN +Q R AL F+ + L+
Sbjct: 253 GSRRWKQVLVFTKTKHGANRLAEQLGKDGIEAMAIHGNKSQGARTRALSRFKDGSLPVLV 312
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+AARGLDI + V+NY P YVHR+GRT RAG EG AV+ V + LL I
Sbjct: 313 ATDIAARGLDIDELPHVVNYELPNVPEDYVHRIGRTGRAGHEGTAVSLVDREEMKLLTGI 372
>gi|66472376|ref|NP_001018522.1| probable ATP-dependent RNA helicase DDX47 [Danio rerio]
gi|63102032|gb|AAH95776.1| Zgc:112350 [Danio rerio]
Length = 512
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 145/375 (38%), Positives = 219/375 (58%), Gaps = 6/375 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL ++ L AC+ LG+ KPT IQ IP+AL GRD+ G A TGSGKT AFA+P L+ LL
Sbjct: 83 ELGVTEVLCEACDQLGWKKPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFAVPVLQSLL 142
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+R+ L+LTPTRELA Q+ + + ++ ++VGG+ Q L P
Sbjct: 143 ACAQRL---HTLVLTPTRELAFQIAEQFDALGSSIGVKTAVIVGGIDMMSQALVLAKKPH 199
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+V+ATPGR+IDH+ N+ +L L L++DEADR+L + F +E+ +++++ P+ R+T LF
Sbjct: 200 VVIATPGRLIDHMENTKGFNLRALKYLVMDEADRILNMDFESEVDKILKVIPRDRRTFLF 259
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ V +L + +L P++ S L + + I ++ L+S+ ++
Sbjct: 260 SATMTKKVQKLQRAALQDPVKCSVSSKYATVDKLQQFYIFIPSKY---KDCYLVSILNEL 316
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ ++F GT R+ +L + A LHG ++Q +RL AL F+ + L+ATD
Sbjct: 317 AGNSFMVFCGTCNNTQRVALLLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLLATD 376
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++TFVT D L + I
Sbjct: 377 VASRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEAL 436
Query: 362 AGSKLKSRIVAEQSI 376
G KL + E+ +
Sbjct: 437 IGKKLPAFPTQEEEV 451
>gi|146294196|ref|YP_001184620.1| DEAD/DEAH box helicase [Shewanella putrefaciens CN-32]
gi|145565886|gb|ABP76821.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
CN-32]
Length = 550
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 150/382 (39%), Positives = 229/382 (59%), Gaps = 12/382 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE LL
Sbjct: 17 LGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLE-LLS 75
Query: 63 RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+ ++ A +R L+LTPTRELA QV +E ++ +R +V GG+ Q LR
Sbjct: 76 KGQKAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKLRHGV 135
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D++VATPGR++D L N +V + L +L+LDEADR+L++GF +I +++ + PK+RQ ++
Sbjct: 136 DVLVATPGRLMD-LYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLM 194
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++++ EL K + P+ +S P +T+ + V + + ++ A+L L +
Sbjct: 195 FSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQKA---ALLTQLIKQ 251
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++FS TK A+RL A +KAA +HGN +Q R +AL F+ V L+AT
Sbjct: 252 HDWQQVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVLVAT 311
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V+ + LL I
Sbjct: 312 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEIKLLNDI-- 369
Query: 361 RAGSKLKSRIVAEQSITKWSKI 382
+L +RI+ + + ++ +
Sbjct: 370 ---ERLINRILDREVVEGFNPV 388
>gi|427400760|ref|ZP_18891998.1| hypothetical protein HMPREF9710_01594 [Massilia timonae CCUG 45783]
gi|425720273|gb|EKU83196.1| hypothetical protein HMPREF9710_01594 [Massilia timonae CCUG 45783]
Length = 523
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 151/366 (41%), Positives = 219/366 (59%), Gaps = 13/366 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L+ + RA GY PTPIQA IP+ L GRD+ G+A TG+GKTA+F+LP L+ L+
Sbjct: 44 DFGLAPEIQRALSDQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTASFSLPILQLLM 103
Query: 62 ------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
P R P +R L+L PTRELAVQV ++ A+ T +R +V GG+ K Q
Sbjct: 104 PHANASMSPARHP-VRALVLVPTRELAVQVADNVKAYARHTPLRATVVFGGMDMKPQTEI 162
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR +IV+ATPGR++DH+ +V L + +L++DEADR+L++GF ++ ++ L PK+
Sbjct: 163 LRRGVEIVIATPGRLLDHIEQK-NVSLGQVQMLVMDEADRMLDMGFLPDLQRIINLLPKQ 221
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVL 234
RQ ++FSAT + ++ +L L PL + R + E+V +I ++ E + V+
Sbjct: 222 RQNLMFSATFSPEIKKLANTFLNNPLTIEV----ARSNATAEKVTQIVYKVDEEQKRDVV 277
Query: 235 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 294
L +VIIFS TK A RL +KA+ +HG+ TQ +R+ AL+ F+ V
Sbjct: 278 EHLIRSRDMKQVIIFSNTKIGASRLSSHLEKRGVKASAIHGDKTQQERMAALDAFKNGSV 337
Query: 295 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 354
+ L+ATDVAARGLDI + VINY P + YVHR+GRT RAG G A++ +D D L
Sbjct: 338 EVLVATDVAARGLDISDLPAVINYDLPYNAEDYVHRIGRTGRAGASGDALSVYSDKDERL 397
Query: 355 LKAIAK 360
L I K
Sbjct: 398 LADIEK 403
>gi|409399600|ref|ZP_11249870.1| ATP-dependent RNA helicase [Acidocella sp. MX-AZ02]
gi|409131219|gb|EKN00931.1| ATP-dependent RNA helicase [Acidocella sp. MX-AZ02]
Length = 414
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 156/367 (42%), Positives = 220/367 (59%), Gaps = 7/367 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+ P+L A A G+ KPTPIQA IP AL GRD+ G A TG+GKTAAFALP + +
Sbjct: 12 FGLASPILGALTAAGFIKPTPIQAKAIPHALAGRDVLGIAQTGTGKTAAFALPMINAMTD 71
Query: 63 R--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
R KR + R L+L PTRELAVQ+ I+K A +R L+VGG+S Q +
Sbjct: 72 RLHSKRF-STRALVLAPTRELAVQIEQEIKKFAAGLGLRTVLIVGGVSRFGQVQRMMRGA 130
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIVV PGR++D L N+ + +D +LDEADR+L+LGF +I ++V + P RRQ+ L
Sbjct: 131 DIVVGCPGRVVD-LMNTRELVIDQCQFFVLDEADRMLDLGFMPDIRKVVNVLPARRQSAL 189
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+ ++ +L L +P+R+ + A PS + + V + N +L+ L +
Sbjct: 190 FSATMPAEIAKLANGLLREPVRVEIEAVASTPSRIEQSVYFAEGPEKRN---LLIKLLHQ 246
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
SK ++F+ TK+ A R+ ++ + + AA LHGNL+Q QR AL+ F+ V L+AT
Sbjct: 247 PEFSKTVVFTRTKRGADRVALMLNSSKISAAALHGNLSQNQRQRALDAFKAGEVRALVAT 306
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARG+D+ V VIN+ P + SYVHR+GRTAR G +G AV F + L I K
Sbjct: 307 DIAARGIDVNAVSHVINFELPNEPESYVHRIGRTARNGADGVAVAFCDATELPYLTQIEK 366
Query: 361 RAGSKLK 367
G K+K
Sbjct: 367 LTGIKMK 373
>gi|386314915|ref|YP_006011080.1| DEAD/DEAH box helicase [Shewanella putrefaciens 200]
gi|319427540|gb|ADV55614.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
Length = 539
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 150/382 (39%), Positives = 229/382 (59%), Gaps = 12/382 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE LL
Sbjct: 6 LGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLE-LLS 64
Query: 63 RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+ ++ A +R L+LTPTRELA QV +E ++ +R +V GG+ Q LR
Sbjct: 65 KGQKAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKLRHGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D++VATPGR++D L N +V + L +L+LDEADR+L++GF +I +++ + PK+RQ ++
Sbjct: 125 DVLVATPGRLMD-LYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLM 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++++ EL K + P+ +S P +T+ + V + + + + A+L L +
Sbjct: 184 FSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQ---KSALLTQLIKQ 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++FS TK A+RL A +KAA +HGN +Q R +AL F+ V L+AT
Sbjct: 241 HDWQQVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V+ + LL I
Sbjct: 301 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEIKLLNDI-- 358
Query: 361 RAGSKLKSRIVAEQSITKWSKI 382
+L +RI+ + + ++ +
Sbjct: 359 ---ERLINRILDREVVEGFNPV 377
>gi|149371676|ref|ZP_01891092.1| RNA helicase [unidentified eubacterium SCB49]
gi|149355303|gb|EDM43863.1| RNA helicase [unidentified eubacterium SCB49]
Length = 419
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 149/369 (40%), Positives = 233/369 (63%), Gaps = 7/369 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L LS PLL+A GY+ P+PIQA IP L G+D+ SA TG+GKTA F+LP L +
Sbjct: 5 DLGLSDPLLKAISKKGYTTPSPIQAKAIPKILEGKDVLASAQTGTGKTAGFSLPMLHIIT 64
Query: 62 YRP-KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+P +R ++ LI+TPTRELA Q+ I+ + FTD+R ++ GG++ Q AL+
Sbjct: 65 KQPFQRHRPVKALIVTPTRELAAQILKEIKDYSAFTDVRSTVIFGGVNANPQIRALKQGT 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DI+VATPGR++D L + ++ + L+LDEADR+L++GF +I++++ + P +RQ +L
Sbjct: 125 DILVATPGRLLD-LHSQGVFNMKKVEFLVLDEADRMLDMGFVRDINKILAILPAKRQNLL 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVR-IRRMREVNQEAVLLSLCS 239
FSAT ++++ +L + LT P+ + A +R ++ E+V + I + + + +++ L +
Sbjct: 184 FSATFSKEIKKLAQSFLTNPVLVEA----QRENSTAEKVKQTIYKTNKSAKTNLVIKLIT 239
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+ +V+IF+ TK A+RL G A +K+A +HGN +Q R +AL F+ + L+A
Sbjct: 240 EGNWEQVLIFTRTKHGANRLAEKLGKADVKSAAIHGNKSQGARTKALAGFKDGSIRVLVA 299
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TD+AARGLDI + VINY P YVHR+GRTARAG G A++ V+ ++ +K I
Sbjct: 300 TDIAARGLDIPLLPHVINYELPNIPEDYVHRIGRTARAGASGDAISIVSVDEFEYVKGIE 359
Query: 360 KRAGSKLKS 368
K G KL S
Sbjct: 360 KLLGEKLNS 368
>gi|94498002|ref|ZP_01304566.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
gi|94422585|gb|EAT07622.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
Length = 459
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 152/370 (41%), Positives = 217/370 (58%), Gaps = 12/370 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L LS P+L+A A Y+ PTPIQ IP+ L G D+CG A TG+GKTAAFALP+L+
Sbjct: 5 DLGLSEPILKALSAKKYTAPTPIQQKAIPVLLQGHDLCGIAQTGTGKTAAFALPSLDYFA 64
Query: 62 YRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
PK P R+L+L+PTRELA Q+ +F + V GG+ Q AL
Sbjct: 65 RNPKPTPVRGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVETVFGGVPINRQIKALSQG 124
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
DIVVATPGR++D L + + D + +LDEAD+++++GF + + +L P RQ +
Sbjct: 125 VDIVVATPGRLLD-LIDQRCFTIKDTEIFVLDEADQMMDMGFIHPLKRVAKLLPTDRQNL 183
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ---EAVLLS 236
FSAT+ ++++ L L P+++S P + T E VR ++ VNQ +A+L
Sbjct: 184 FFSATMPKEIEALAGQFLNDPVKVSV-----APQSTTAERVR-QQATFVNQAEKQALLHI 237
Query: 237 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 296
+ + +IF+ TK A R+ A + A +HGN +Q QR AL+ FR+ V
Sbjct: 238 VLETEDIDRALIFTRTKHGADRVVRFLEGAGIDAFAIHGNKSQGQRTTALQAFRQGKVKL 297
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 356
L+ATD+AARG+D+ GV VIN+ P YVHR+GRTARAG EG A++FV D++R LK
Sbjct: 298 LVATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGAEGVAISFVADDERPYLK 357
Query: 357 AIAKRAGSKL 366
AI + KL
Sbjct: 358 AIERATRVKL 367
>gi|429210560|ref|ZP_19201727.1| putative ATP-dependent RNA helicase [Pseudomonas sp. M1]
gi|428159334|gb|EKX05880.1| putative ATP-dependent RNA helicase [Pseudomonas sp. M1]
Length = 664
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 153/366 (41%), Positives = 214/366 (58%), Gaps = 17/366 (4%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS L RA EA GYS+PTP+Q IP L GRD+ +A TG+GKT FALP LERL
Sbjct: 6 LGLSEALARAVEAAGYSQPTPVQERAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLF- 64
Query: 63 RPKRIP---------AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 113
P+ P RVL+LTPTRELA QVH + A+ ++ + GG+ Q
Sbjct: 65 -PEGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLKSACIFGGVGMNPQV 123
Query: 114 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 173
A+ D++VA PGR++D L SVDL + +L+LDEADR+L++GF ++ +++ P
Sbjct: 124 QAMSKGVDVLVACPGRLLD-LIGQGSVDLSRVEILVLDEADRMLDMGFIHDVKKVLAKLP 182
Query: 174 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMREVNQEA 232
+RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+ + A
Sbjct: 183 PKRQNLLFSATFSKDITDLANKLLHNPERIEVTP----PNTTVERIEQRVFRIPSAQKRA 238
Query: 233 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 292
+L L + +V++F+ TK A+RL L AA +HGN +Q R +AL F+
Sbjct: 239 LLAHLVTVGAWEQVLVFTRTKHGANRLAEYLSKHGLPAAAIHGNKSQNARTKALADFKTN 298
Query: 293 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 352
V L+ATD+AARGLDI + V+NY P YVHR+GRT RAGR G A++ V ++
Sbjct: 299 DVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEE 358
Query: 353 SLLKAI 358
LLKAI
Sbjct: 359 KLLKAI 364
>gi|407452329|ref|YP_006724054.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-CH-1]
gi|403313313|gb|AFR36154.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-CH-1]
Length = 371
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 144/367 (39%), Positives = 223/367 (60%), Gaps = 4/367 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L+LS P+L+A GY+ PT IQ IP L GRD+ G A TG+GKTAAF++P L+ L
Sbjct: 5 QLSLSSPILKAISDAGYTTPTAIQEKAIPTILEGRDLIGCAQTGTGKTAAFSIPLLQILS 64
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
PK+ +IR LILTPTRELA+Q+ IE+ ++F +I+ + GG+ QE AL D
Sbjct: 65 ETPKKGKSIRALILTPTRELAIQIQENIEQYSKFLNIKHLSIFGGVPQGKQERALNQGVD 124
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++D ++ + + L + +L+LDEADR+L++GF ++ +++ PK+RQT+ F
Sbjct: 125 ILIATPGRLLDLMQQGL-LSLSQIEILVLDEADRMLDMGFVNDVKKILTKVPKKRQTLFF 183
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ + + + L P ++ P + T+ + V + + + N +L+++ T
Sbjct: 184 SATMPNSIRQFAETILDNPAEVTVTPVSSTAKTIEQSVYFVEKNDKTN---LLINILKDT 240
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ +IF+ TK A RL G + AA +HGN +Q R +AL+ F+ + LIATD
Sbjct: 241 SELRSLIFTRTKHGADRLVKQLGRTGIFAAAIHGNKSQNARQKALKDFKDNRISVLIATD 300
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARG+DI + VINY P +YVHR+GRT RAG G A++F +R LK I +
Sbjct: 301 IAARGIDIDELPQVINYELPNVPETYVHRIGRTGRAGTSGNAISFCGAEERKDLKNIQRL 360
Query: 362 AGSKLKS 368
G + +
Sbjct: 361 IGFTMTT 367
>gi|154420635|ref|XP_001583332.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121917573|gb|EAY22346.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 449
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 138/376 (36%), Positives = 236/376 (62%), Gaps = 5/376 (1%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
++L L++P++RA ++ PT +QA IP L+G+DIC +AITGSGK+ AF +P +++L
Sbjct: 10 LDLKLAKPIIRALNENNFTNPTKVQAETIPKILSGQDICATAITGSGKSMAFLIPIVQKL 69
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
L + +P + LI++PTRELA Q+ ++ + +A I LV+GG+S + Q L P
Sbjct: 70 LTF-RGLPGPKALIMSPTRELAQQLKAVCDMLAAHCAITSTLVIGGVSDEEQRELLTPAP 128
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DI++ TPGR ID + N+ + L+ L +LDEADRLL GF ++++ +V P++ QT+L
Sbjct: 129 DIIIGTPGRFIDSIFNAKVLKLEHLQFFVLDEADRLLGKGFESQLNTIVSQLPEKHQTLL 188
Query: 181 FSATLTEDVDEL-IKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
F+ATL + V +L K+ ++S +P + +T+ ++ ++ E + L++LC
Sbjct: 189 FTATLNDQVAKLATKIQKKSSEKISINPYMELNPNITQMFIKTKK--EERRLPYLVALCR 246
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
K ++F TK AH + +LF + +AELH +L+Q R EA+E FR+ V +L+A
Sbjct: 247 NMCKDKTLVFFPTKALAHHVFLLFKNLGIASAELHADLSQTARNEAIEQFRESKVQYLLA 306
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT-FVTDNDRSLLKAI 358
+D+AARG+DI ++ VIN+ P +L Y+HR GRT RAG++G A++ +VT ++ ++K +
Sbjct: 307 SDLAARGIDIPDIEYVINFTIPNELERYIHRTGRTGRAGKKGTAISMYVTPEEKRVMKKM 366
Query: 359 AKRAGSKLKSRIVAEQ 374
K + +++ + +
Sbjct: 367 QKNSPGEVQFMTIPDN 382
>gi|294142025|ref|YP_003558003.1| DEAD/DEAH box helicase [Shewanella violacea DSS12]
gi|293328494|dbj|BAJ03225.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
DSS12]
Length = 427
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 156/366 (42%), Positives = 212/366 (57%), Gaps = 14/366 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+L LL+ LGY++PTPIQ IP L G+DI A TGSGKTAAFALP L +L
Sbjct: 16 LSLRPELLQVLTELGYTQPTPIQTQAIPAILAGQDIMAGAQTGSGKTAAFALPILNKLTA 75
Query: 63 R----------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 112
+ PAIR L+LTPTRELA+QVH K A+ T ++ LV GG+S Q
Sbjct: 76 QICLQKTEAQDSADKPAIRALVLTPTRELALQVHGSFVKYAKLTQVKSALVYGGVSIDAQ 135
Query: 113 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172
L + DI+VATPGR++DHLR S++L+ L L+ DEADR+L++GF EI +V+
Sbjct: 136 AQILAAGVDILVATPGRLLDHLRRG-SLNLNQLEFLVFDEADRMLDMGFKDEIDAIVKQL 194
Query: 173 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 232
PK RQT+LFSAT E + L + L P ++ +R + E R+ + + A
Sbjct: 195 PKTRQTLLFSATFDESIYGLSQSLLRDPKQIEV---GERNAAAVEIDQRVYAVDSDRKLA 251
Query: 233 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 292
++ L +V+IFS K AA +L A + A HG+L+Q R + L+ F+
Sbjct: 252 LVTHLIESGNLQQVLIFSRKKLAADKLAANLTKAGISAQAFHGDLSQGAREKVLQGFKDG 311
Query: 293 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 352
V L+ATDVAARG+DII + VINY P YVHR+GRT RAG +G A+T + D
Sbjct: 312 EVRVLVATDVAARGIDIIDLNYVINYELPYKAEDYVHRIGRTGRAGNKGLAITLLCSEDE 371
Query: 353 SLLKAI 358
LL+ +
Sbjct: 372 HLLEEV 377
>gi|195051805|ref|XP_001993174.1| GH13670 [Drosophila grimshawi]
gi|193900233|gb|EDV99099.1| GH13670 [Drosophila grimshawi]
Length = 518
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 145/366 (39%), Positives = 214/366 (58%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L LS L +AC+ L + P+ IQ IP+AL G+D+ G A TGSGKT AFALP L LL
Sbjct: 61 DLGLSETLCKACDELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFALPILHALL 120
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A L+LTPTRELA Q+ E + I+CC++VGG+ Q L P
Sbjct: 121 ENPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVIVGGMDMVAQGLQLAKKPH 177
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++DHL N +L + L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 178 IIIATPGRLVDHLENLKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 237
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSK 240
SAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 238 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVDQLQQYYLFIPVKYKDVYLVHILNELAGN 297
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T + ++ L A LHG ++Q +RL AL F+ ++ LI+T
Sbjct: 298 SF----MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILIST 353
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+T V+ D L + I +
Sbjct: 354 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITIVSQYDIELYQRIEQ 413
Query: 361 RAGSKL 366
G +L
Sbjct: 414 LLGKQL 419
>gi|325284979|ref|YP_004260769.1| DEAD/DEAH box helicase [Cellulophaga lytica DSM 7489]
gi|324320433|gb|ADY27898.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM
7489]
Length = 429
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 146/376 (38%), Positives = 227/376 (60%), Gaps = 15/376 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL---- 57
L LS LL+A + GY+ P+PIQ IP L G+D+ SA TG+GKTA F LP L
Sbjct: 5 NLGLSNNLLKAIDKKGYTTPSPIQEKAIPPVLEGKDVLASAQTGTGKTAGFTLPLLHLLS 64
Query: 58 --ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
+ L +RP +R LILTPTRELA Q+ + +++ ++F D+R ++ GG++ K Q
Sbjct: 65 EQKALRHRP-----VRALILTPTRELAAQIFANVKEYSEFLDLRSAVIFGGVNQKPQIAN 119
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
L+ D++VATPGR++D L N + LD + + +LDEADR+L++GF +I +++L P +
Sbjct: 120 LKRGMDVLVATPGRLLD-LHNQRFLSLDKVEIFVLDEADRMLDMGFLRDIERVMKLIPAK 178
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQ ++FSAT ++D+ +L L P+++ A P + ++V R+ + ++ +++
Sbjct: 179 RQNLMFSATFSKDIKKLAHGILNNPIQVEATPENTAVEVIKQKVYRVAKGKKT---GLII 235
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
L S +V++F+ TK A+ L + AA +HGN +Q R +AL+ F+K +
Sbjct: 236 KLISDGNWQQVLVFTRTKHGANNLCKKMSSKGISAAAIHGNKSQGARTKALDGFKKGTLR 295
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATD+AARGLDI + VINY P YVHR+GRT RAG G AV+ V+ ++ + L
Sbjct: 296 VLVATDIAARGLDIPLLPHVINYEIPNISEDYVHRIGRTGRAGASGEAVSLVSADETTYL 355
Query: 356 KAIAKRAGSKLKSRIV 371
K I K G ++ IV
Sbjct: 356 KDIQKLIGMQIPVEIV 371
>gi|359795873|ref|ZP_09298486.1| putative ATP-dependent RNA helicase [Achromobacter arsenitoxydans
SY8]
gi|359366192|gb|EHK67876.1| putative ATP-dependent RNA helicase [Achromobacter arsenitoxydans
SY8]
Length = 466
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 150/354 (42%), Positives = 218/354 (61%), Gaps = 12/354 (3%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL------Y 62
LL++ GY+ PTPIQA IP+ + GRD+ G+A TG+GKTAAF LP L RL+
Sbjct: 5 LLQSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHRLMPLANTSA 64
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P R P +R LILTPTRELA QV+ +++ ++ T +R +V GG+ Q+ ALR ++
Sbjct: 65 SPARHP-VRALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQKEALRRGCEV 123
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+VATPGR++DH+ +V+L + +L+LDEADR+L++GF ++ ++RL P +RQ +LFS
Sbjct: 124 LVATPGRLLDHVEQK-NVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQRQGLLFS 182
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT + ++ +L + L P+ + A R +T T +M + A ++ L
Sbjct: 183 ATFSNEIRKLGRSYLNHPVEIEV---AARNATATTITQIAYKMTSDAKRAAVVHLVKSRG 239
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+VI+FS TK RL +KA +HG+ TQA R++ALE F+ ++ L+ATDV
Sbjct: 240 LKQVIVFSNTKIGTARLARDLERDGVKAESIHGDKTQADRMKALEAFKAGELEVLVATDV 299
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT-FVTDNDRSLL 355
AARGLD+ GV VINY P + YVHR+GRT RAG G A+ F D +R LL
Sbjct: 300 AARGLDVAGVPCVINYDLPYNSEDYVHRIGRTGRAGASGEAIALFTADEERYLL 353
>gi|195475963|ref|XP_002090252.1| GE12898 [Drosophila yakuba]
gi|194176353|gb|EDW89964.1| GE12898 [Drosophila yakuba]
Length = 522
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 146/366 (39%), Positives = 213/366 (58%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ L +AC+ L + P+ IQ IP+AL G+D+ G A TGSGKT AFALP L LL
Sbjct: 72 DLGLNETLCQACDELKWRSPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALL 131
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A L+LTPTRELA Q+ E + I+CC+VVGG+ Q L P
Sbjct: 132 ENPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 188
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++DHL N +L + L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 189 IIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 248
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSK 240
SAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 249 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNDLAGN 308
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T + ++ L A LHG ++Q +RL AL F+ ++ LI+T
Sbjct: 309 SF----MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILIST 364
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+T VT D L + I
Sbjct: 365 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDIELYQRIEH 424
Query: 361 RAGSKL 366
G +L
Sbjct: 425 LLGKQL 430
>gi|357008100|ref|ZP_09073099.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
elgii B69]
Length = 529
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 149/359 (41%), Positives = 208/359 (57%), Gaps = 7/359 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E L +LRA +G+ + TPIQ IP+A+ GRD+ G A TG+GKTAAF +P + ++
Sbjct: 6 EFGLEPKVLRAITEMGFEESTPIQEKAIPIAMEGRDLIGQAQTGTGKTAAFGIPLINKID 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ +RI A LI+ PTRELA+QV IEK+ +F IR + GG Q ALR P
Sbjct: 66 IKEERIVA---LIMCPTRELAIQVAEEIEKLGRFKGIRSLPIYGGQDIVKQIRALRKKPQ 122
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGR++DH+ N ++ LDD+ +ILDEAD +L++GF +I +++L P RQTMLF
Sbjct: 123 IIIGTPGRLLDHI-NRKTIKLDDVQTVILDEADEMLDMGFMEDIQSILKLVPDERQTMLF 181
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ ++ +L + L+ P +S P + + + + E + L L
Sbjct: 182 SATMPINIQKLAQQFLSNPEHVSVIPKQVSAPLIDQSYIE---LHERQKFEALCRLIDME 238
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
IIF TK+ L A LHG+L+Q QR + FR +D L+ATD
Sbjct: 239 APDLAIIFGRTKRRVDELSEALQKRGYTAEGLHGDLSQNQRDNVMRKFRDGSIDVLVATD 298
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
VAARGLD+ GV VIN+ P+D SYVHR+GRT RAG+EG A TFVT + L I K
Sbjct: 299 VAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGAAYTFVTPREIDHLHFIEK 357
>gi|392595723|gb|EIW85046.1| DEAD-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 465
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 155/372 (41%), Positives = 215/372 (57%), Gaps = 22/372 (5%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L PLL+A + + + +PT IQ+ +P AL GRDI G A TGSGKTAAFALP L++L
Sbjct: 20 LGLIDPLLKALDQVNFKQPTEIQSQALPSALLGRDIIGVAETGSGKTAAFALPILQKLWE 79
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
PK + A IL PTRELA Q+ E + +RC ++VGG+ Q AL P I
Sbjct: 80 EPKGLFAC---ILAPTRELAYQISQQFESLGSAMGVRCLVLVGGVDRMPQAVALAKRPHI 136
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+VATPGR+ DHL+N+ L L L+LDEADRLL++ F +I +++++ PK R T LFS
Sbjct: 137 IVATPGRLNDHLQNTKGFSLRSLKFLVLDEADRLLDMDFGPDIDQILKVIPKERTTYLFS 196
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T V +L + SL+ P+R+ + STL + + I ++ L+ L +
Sbjct: 197 ATMTTKVAKLQRASLSNPVRVEVSSKYQTVSTLLQYYLFIPL---AQKDVHLVYLVNSLA 253
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
++ +I+F+ T A RL I+ A LHG L+Q+QRL AL F+ + L+ATDV
Sbjct: 254 SNSIILFTRTVHDAQRLSIVLRTLGFPAVPLHGQLSQSQRLGALGKFKSGGRNILVATDV 313
Query: 303 AAR----------------GLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 346
A+R GLD+ V VIN+ P Y+HRVGRTARAGR G +VT
Sbjct: 314 ASRHVLHSGFMGPTDHHYRGLDLPSVDVVINFDIPSHSKDYIHRVGRTARAGRSGKSVTI 373
Query: 347 VTDNDRSLLKAI 358
VT D L++ I
Sbjct: 374 VTQYDVELIQRI 385
>gi|260584701|ref|ZP_05852447.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
elegans ATCC 700633]
gi|260157724|gb|EEW92794.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
elegans ATCC 700633]
Length = 509
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 146/392 (37%), Positives = 226/392 (57%), Gaps = 11/392 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L LL + E +G+ + TPIQ+ IPLAL G+D+ G A TG+GKTA+F LP L+++
Sbjct: 5 ELGLDSALLESIEKMGFEEATPIQSQTIPLALAGKDVIGQAQTGTGKTASFGLPMLQKIN 64
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
R +++ L++ PTRELA+Q + ++ + I V GG Q L+ P
Sbjct: 65 LRNRKVQG---LVIAPTRELAIQTQEELYRLGKDKKIHVQAVYGGADIGRQIRQLKDQPH 121
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IVV TPGR++DH+ + ++ LD++ L+LDEAD +L +GF +I +++L P+ RQT+LF
Sbjct: 122 IVVGTPGRLLDHI-SRKTLRLDNIETLVLDEADEMLNMGFLEDIESIIKLVPENRQTLLF 180
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ +D+ + + +P + S + + + V+ + + + LL + +
Sbjct: 181 SATMPDDIKRIGVQFMKEPEHVRIKSSEMTATLIDQYFVKCKDFEKFDIMTRLLDVQTPE 240
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
T I+F TK+ L + +A +HG+L+Q +R+ L F+ H+D L+ATD
Sbjct: 241 LT---IVFGRTKRRVDELARGLEMRGFRAEGIHGDLSQQKRMSVLRDFKNNHLDILVATD 297
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV V NY P+D SYVHR+GRT RAG+EG +VTFVT N+ L+ I
Sbjct: 298 VAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQEGMSVTFVTPNEMDYLRVIEDL 357
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAI 393
+ R+ A + T+ I QM+ + I
Sbjct: 358 T----RKRMTALRPPTQMEAIEGQMKSAIEQI 385
>gi|395648526|ref|ZP_10436376.1| ATP-dependent RNA helicase [Pseudomonas extremaustralis 14-3
substr. 14-3b]
Length = 448
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 153/373 (41%), Positives = 223/373 (59%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 QFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +PD
Sbjct: 64 GPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTMLF
Sbjct: 124 ILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVGECVNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + +++ L P L + + +T +++V V++E +L L +
Sbjct: 183 SATTGGSTLRDMVAKVLNNPEHLQVNNVSDLNATTRQQIVTAD--HNVHKEQILNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ AA R+ KA LHG Q R A++ ++ V L+AT
Sbjct: 241 ETYQKAIVFTNTRAAADRIYGRLVAQDYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I +
Sbjct: 301 DVAARGLDVDGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQSFERRTIKE 373
>gi|152999406|ref|YP_001365087.1| DEAD/DEAH box helicase [Shewanella baltica OS185]
gi|151364024|gb|ABS07024.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
Length = 525
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 148/385 (38%), Positives = 229/385 (59%), Gaps = 12/385 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE LL
Sbjct: 17 LGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLE-LLS 75
Query: 63 RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+ R A +R L+LTPTRELA QV +E + +R ++ GG+ Q LR
Sbjct: 76 KGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRHGV 135
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D++VATPGR++D L N +V L +L+LDEADR+L++GF +I +++ + PK+RQ ++
Sbjct: 136 DVLVATPGRLMD-LYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLM 194
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++++ EL K + P+ +S P +T+ + V + + + + A+L+ L +
Sbjct: 195 FSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQ---KSALLIQLIKQ 251
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++FS TK A+RL A +KAA +HGN +Q R +AL F+ L+AT
Sbjct: 252 NDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVAT 311
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V++ + LL I
Sbjct: 312 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLNDI-- 369
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQ 385
+L +R++ + + ++ ++ +
Sbjct: 370 ---ERLINRVLDREMVEGFNHVLPE 391
>gi|423096700|ref|ZP_17084496.1| DEAD/DEAH box helicase domain protein [Pseudomonas fluorescens
Q2-87]
gi|397887096|gb|EJL03579.1| DEAD/DEAH box helicase domain protein [Pseudomonas fluorescens
Q2-87]
Length = 448
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 152/366 (41%), Positives = 221/366 (60%), Gaps = 4/366 (1%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 68
LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+ K
Sbjct: 11 LLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLIGPAKVRV 70
Query: 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 128
+I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +PDI++ TPG
Sbjct: 71 SIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPDILIGTPG 130
Query: 129 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL-TE 187
RMI+ L N+ ++DL ++ VL+LDEADR+L++GFS ++ LV C R+QTMLFSAT
Sbjct: 131 RMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFSEDVQRLVDECTNRQQTMLFSATTGGS 189
Query: 188 DVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVI 247
+ E+I L P L + ++ ST ++++ + ++E ++ L + K I
Sbjct: 190 GLREMIAKVLNNPEHLQLNAVSQLNSTTRQQIITADHNQ--HKEQIVNWLLANETYEKAI 247
Query: 248 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 307
+F+ T+ A R+ KA LHG Q R A++ ++ V L+ATDVAARGL
Sbjct: 248 VFTNTRAMADRIYGRLVAQDYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVATDVAARGL 307
Query: 308 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 367
D+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I + +
Sbjct: 308 DVDGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIERYLKQSFE 367
Query: 368 SRIVAE 373
R + E
Sbjct: 368 RRTIKE 373
>gi|160942681|ref|ZP_02089924.1| hypothetical protein FAEPRAM212_00153 [Faecalibacterium prausnitzii
M21/2]
gi|158446036|gb|EDP23039.1| DEAD/DEAH box helicase [Faecalibacterium prausnitzii M21/2]
Length = 641
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 151/385 (39%), Positives = 218/385 (56%), Gaps = 14/385 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNLS PLLRA + GY P+PIQAA IP L GRD+ G A TG+GKTAAFALP L+RL
Sbjct: 5 ELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPMLDRLT 64
Query: 62 YR-PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
P+R A+R LILTPTRELA+Q+ E ++ +R ++ GG+ Q AL+
Sbjct: 65 ANAPRRKGAVRALILTPTRELALQIGESFEAYGKYLKLRSTVIFGGVGQAPQVEALKKGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DI++A PGR+ D + +DL L + +LDEADR+L++GF ++ +++ P +RQ ++
Sbjct: 125 DILIACPGRLNDLIGQGF-IDLSALEIFVLDEADRMLDMGFVHDVKKVIAKLPAQRQNLM 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+ ++++L L P + DP S+ + + + E + +LL K
Sbjct: 184 FSATMPAEIEQLAAGILHDPAFVKVDPV----SSTVDRIQQSLYYVEKGNKKLLLPWLIK 239
Query: 241 TFTSKVI---IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
V+ +FS TK A ++ + AA +HGN +Q R+ ALE F+ L
Sbjct: 240 NLQPPVVNALVFSRTKHGADKIAKDLTKQGIPAAAIHGNKSQTARVTALEDFKSGKTRVL 299
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATD+AARG+DI + V NY P +YVHR+GRTARAG +G AV+F ++ L
Sbjct: 300 VATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEQEYLAG 359
Query: 358 IAKRAGSKLKSRIVAEQSITKWSKI 382
I KL R + S W +
Sbjct: 360 I-----EKLNRRKIPVVSGHPWDGV 379
>gi|160874026|ref|YP_001553342.1| DEAD/DEAH box helicase [Shewanella baltica OS195]
gi|160859548|gb|ABX48082.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
Length = 525
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 148/385 (38%), Positives = 229/385 (59%), Gaps = 12/385 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE LL
Sbjct: 17 LGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLE-LLS 75
Query: 63 RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+ R A +R L+LTPTRELA QV +E + +R ++ GG+ Q LR
Sbjct: 76 KGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRHGV 135
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D++VATPGR++D L N +V L +L+LDEADR+L++GF +I +++ + PK+RQ ++
Sbjct: 136 DVLVATPGRLMD-LYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLM 194
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++++ EL K + P+ +S P +T+ + V + + + + A+L+ L +
Sbjct: 195 FSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQ---KSALLIQLIKQ 251
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++FS TK A+RL A +KAA +HGN +Q R +AL F+ L+AT
Sbjct: 252 NDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVAT 311
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V++ + LL I
Sbjct: 312 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLNDI-- 369
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQ 385
+L +R++ + + ++ ++ +
Sbjct: 370 ---ERLINRVLDREMVEGFNHVLPE 391
>gi|126175663|ref|YP_001051812.1| DEAD/DEAH box helicase [Shewanella baltica OS155]
gi|125998868|gb|ABN62943.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
Length = 526
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 148/385 (38%), Positives = 229/385 (59%), Gaps = 12/385 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE LL
Sbjct: 17 LGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLE-LLS 75
Query: 63 RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+ R A +R L+LTPTRELA QV +E + +R ++ GG+ Q LR
Sbjct: 76 KGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRHGV 135
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D++VATPGR++D L N +V L +L+LDEADR+L++GF +I +++ + PK+RQ ++
Sbjct: 136 DVLVATPGRLMD-LYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLM 194
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++++ EL K + P+ +S P +T+ + V + + + + A+L+ L +
Sbjct: 195 FSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQ---KSALLIQLIKQ 251
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++FS TK A+RL A +KAA +HGN +Q R +AL F+ L+AT
Sbjct: 252 NDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVAT 311
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V++ + LL I
Sbjct: 312 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLNDI-- 369
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQ 385
+L +R++ + + ++ ++ +
Sbjct: 370 ---ERLINRVLDREMVEGFNHVLPE 391
>gi|409045997|gb|EKM55477.1| hypothetical protein PHACADRAFT_184272 [Phanerochaete carnosa
HHB-10118-sp]
Length = 472
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 157/380 (41%), Positives = 216/380 (56%), Gaps = 18/380 (4%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L PLL A + L ++ PT IQ A +P AL GRDI G A TGSGKTAAFALP L++L
Sbjct: 26 LGLIDPLLEALQQLSFTSPTDIQTAALPHALEGRDIIGVASTGSGKTAAFALPILQKLWD 85
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P+ + A ++ PTRELA Q+ E + +RC VVGG+ Q AL P +
Sbjct: 86 DPRGLFAC---VIAPTRELAYQITEHFEALGSAMGVRCATVVGGIDEMSQAVALAKKPHV 142
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
VVATPGR+ HL N+ L L L+LDEADRLL++ F + +++++ P+ R T LFS
Sbjct: 143 VVATPGRLQYHLENTKGFSLRSLKFLVLDEADRLLDMDFGPILDKILKVIPQERTTYLFS 202
Query: 183 ATLTEDVDELIKLSLTKPLRLSAD----PS-----------AKRPSTLTEEVVRIRRMRE 227
AT+T V +L + SL+ P+R+ P ++R ST++ + +
Sbjct: 203 ATMTTKVAKLQRASLSNPVRVEVSEKYAPLLLIRLLMRLRVSRRYSTVSTLLQYYLFIPL 262
Query: 228 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 287
V ++ L+ L + ++ +IIF+ T RL I+ A LHG L+Q+ RL AL
Sbjct: 263 VQKDVNLMYLANSLASNSIIIFTRTVHDCQRLAIMMRTLGFPAVPLHGQLSQSARLGALG 322
Query: 288 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 347
F+ L+ATDVA+RGLDI V VINY P Y+HRVGRTARAGR G ++TFV
Sbjct: 323 KFKSGGRKVLVATDVASRGLDIPHVDAVINYDIPTHSKDYIHRVGRTARAGRSGKSITFV 382
Query: 348 TDNDRSLLKAIAKRAGSKLK 367
T D L++ I G KL+
Sbjct: 383 TQYDVELVQRIESVTGKKLE 402
>gi|346472553|gb|AEO36121.1| hypothetical protein [Amblyomma maculatum]
Length = 473
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 157/408 (38%), Positives = 229/408 (56%), Gaps = 24/408 (5%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 68
L ACE L + PT IQ IP+AL GRD+ G A TGSGKTA+FALP L+ LL P+R+
Sbjct: 43 LCEACEQLKWKSPTKIQKEAIPVALQGRDVIGLAETGSGKTASFALPILQALLENPQRLF 102
Query: 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 128
A L+LTPTRELA Q+ E + ++ ++VGG+ Q L P +++ATPG
Sbjct: 103 A---LVLTPTRELAFQISEQFEALGASIGVKSAVIVGGIDMMTQALLLAKKPHVIIATPG 159
Query: 129 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 188
R++DHL N+ L L L++DEADR+L + F E+ +++R+ P+ R+T L+SAT+T+
Sbjct: 160 RLVDHLENTKGFSLKSLKYLVMDEADRILNMDFEEEVDKILRVIPRERRTYLYSATMTKK 219
Query: 189 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSKTFTSKVI 247
V +L + SL P+++ + L + + I + ++V +L L +F +
Sbjct: 220 VQKLQRASLRDPVKVEVSSKYQTVEKLMQYYLFIPAKFKDVYLVHLLNELAGNSF----M 275
Query: 248 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 307
+F T R +L A LHG + QA+RL +L F+ ++ LIATDVA+RGL
Sbjct: 276 VFCSTCSNTQRTALLLRNLGFTAIPLHGQMGQAKRLGSLTKFKSKNRSILIATDVASRGL 335
Query: 308 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 367
DI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I G KL
Sbjct: 336 DIPHVDCVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRIEHLIGKKL- 394
Query: 368 SRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAEN 415
+ E +E++V A++ ER R A+ME + E+
Sbjct: 395 -------------PLYETVEEEVMALV--ERVTEAQRFAKMELKEQED 427
>gi|90578695|ref|ZP_01234505.1| putative ATP-dependent RNA helicase, DEAD boxfamily protein
[Photobacterium angustum S14]
gi|90439528|gb|EAS64709.1| putative ATP-dependent RNA helicase, DEAD boxfamily protein
[Photobacterium angustum S14]
Length = 427
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 154/378 (40%), Positives = 225/378 (59%), Gaps = 18/378 (4%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
LNL LL+A LGYS PT +Q IPLAL G D+ A TG+GKTAAFALP L+RL+
Sbjct: 6 LNLHPNLLKALTELGYSTPTDVQQQAIPLALKGDDVMAGAQTGTGKTAAFALPLLQRLMT 65
Query: 63 RP--------------KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 108
P K IR LILTPTRELA QV+ I A++T+I+ + GG S
Sbjct: 66 LPSQAEQVSTAIENNHKSRNNIRALILTPTRELAQQVYDSITTYAKYTEIKVAVAYGGTS 125
Query: 109 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 168
+Q AL + +I+VATPGR++DH+ N SV L ++ +LDEADR+L++GF +I +
Sbjct: 126 MNVQVKALNAGAEILVATPGRLLDHVFNG-SVSLSEVETFVLDEADRMLDMGFIVDIQRI 184
Query: 169 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREV 228
++ P RQT+ FSAT ++ V +L LT P + P+ T+ + V + + R+
Sbjct: 185 MKRMPAERQTLFFSATFSKQVKKLAFDILTNPKMVEVTPANTAAETVEQMVYPVDKHRKA 244
Query: 229 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALEL 288
A L+ S+ + +V++F+ TKQ + +L GL +KA+ ++G+ +Q R AL+
Sbjct: 245 ELLAYLIG--SRNW-RQVLVFTKTKQGSDQLAKDLGLDGIKASSINGDKSQGARQRALDD 301
Query: 289 FRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 348
F+ L+ATDVAARGLDI ++ V+N+ P YVHR+GRT RAG G+A+T ++
Sbjct: 302 FKSGKTRVLVATDVAARGLDIEQLEYVVNFDMPFKAEDYVHRIGRTGRAGMTGHAITLMS 361
Query: 349 DNDRSLLKAIAKRAGSKL 366
++ LKAI + S+L
Sbjct: 362 LDEEWALKAIEELLDSRL 379
>gi|167625497|ref|YP_001675791.1| DEAD/DEAH box helicase [Shewanella halifaxensis HAW-EB4]
gi|167355519|gb|ABZ78132.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 492
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 146/358 (40%), Positives = 216/358 (60%), Gaps = 7/358 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS +L+A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE LL
Sbjct: 6 LGLSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE-LLS 64
Query: 63 RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+ + PA +R L+LTPTRELA Q+ +E QF ++ ++ GG+ Q T L
Sbjct: 65 KGTKAPAKQVRALVLTPTRELAAQIGESVEVYGQFLPLKSAVIFGGVGIGPQITKLNRGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DI+VATPGR++D L N +V L VL+LDEADR+L++GF +I +++ + P +RQ ++
Sbjct: 125 DILVATPGRLLD-LYNQRAVSFSQLEVLVLDEADRMLDMGFIHDIKKILAILPAKRQNLM 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++D+ +L K + P+ +S P +T+ + + + ++V AVL+ L +
Sbjct: 184 FSATFSDDIRQLAKGLVNNPVEISVTPRNATANTVKQWICPVDHGQKV---AVLIELIKQ 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++FS TK A+RL + AA +HGN +Q R +AL F+ V L+AT
Sbjct: 241 NDWQQVLVFSRTKHGANRLAKNLEAKGITAAAIHGNKSQGARTKALADFKSGAVRVLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
D+AARGLDI + V+N+ P YVHR+GRT RAG G+AV+ V+ + LL+ I
Sbjct: 301 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGHAVSLVSSEEIKLLRDI 358
>gi|347751920|ref|YP_004859485.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
coagulans 36D1]
gi|347584438|gb|AEP00705.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
Length = 475
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 145/357 (40%), Positives = 214/357 (59%), Gaps = 7/357 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNLS +L+A + +G+ + +PIQAA IPL + G+DI G A TG+GKTAAF +P +E++
Sbjct: 6 ELNLSPAILKAVKRMGFEEASPIQAATIPLTMQGKDIIGQAQTGTGKTAAFGIPLIEKID 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+R + I I I+ PTRELA+QV + +I Q + + V GG Q AL++ P
Sbjct: 66 HRSRNIQGI---IIAPTRELAIQVSEELYRIGQDSRVHVLAVYGGQDISRQIRALKNHPQ 122
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+V TPGR++DH+ ++ LD + L+LDEAD +L +GF +I ++ PK RQTMLF
Sbjct: 123 IIVGTPGRILDHIHRG-TLKLDHVHTLVLDEADEMLNMGFIDDIEAILSTVPKDRQTMLF 181
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ + + ++ + + P + ++ + V+++ + + + LL + S
Sbjct: 182 SATMPDPIRKIAERFMNNPELVRVKAKEMTVPSIEQYYVKVQEREKFDVLSRLLDVQSPD 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
I+F TK+ L L A +HG+L+QA+RL L F+ +D L+ATD
Sbjct: 242 LA---IVFGRTKRRVDELANALNLRGYLAEGIHGDLSQAKRLSVLRKFKDGKIDVLVATD 298
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
VAARGLDI GV V NY P+D SYVHR+GRT RAGREG A+TFVT + LK +
Sbjct: 299 VAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGREGMAMTFVTPREMGYLKTV 355
>gi|218530745|ref|YP_002421561.1| DEAD/DEAH box helicase [Methylobacterium extorquens CM4]
gi|218523048|gb|ACK83633.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
CM4]
Length = 510
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 146/359 (40%), Positives = 220/359 (61%), Gaps = 6/359 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L++P+LRA E GY PTPIQA +P A+ GRD+CG A TG+GKTAAFALP L RL
Sbjct: 6 DFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHRLS 65
Query: 62 YRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
+R P RVL+L+PTRELA Q+ + +V GG++ QE A+
Sbjct: 66 LDSRRAPRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQERAIAPG 125
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
DI+VATPGR+ID L + ++ L+ + +L+LDEAD++L+LGF + +V++ P +RQ++
Sbjct: 126 VDILVATPGRLID-LVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAKRQSL 184
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
FSAT+ +++ L L+ P++++ P A + ++V+ ++A+L +
Sbjct: 185 FFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFCH---TGAKQALLNHVLR 241
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+V++F+ TK A R+ A++ +A +HGN +Q QR AL FR L+A
Sbjct: 242 DPKIERVLVFTRTKHGADRVVRGLDKASVVSAAIHGNKSQPQRERALAAFRDGSCRVLVA 301
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
TD+AARG+D+ GV V+NY P SYVHR+GRTARAG EG A++F D +R+ L+ I
Sbjct: 302 TDIAARGIDVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRDI 360
>gi|408355702|ref|YP_006844233.1| ATP-dependent RNA helicase [Amphibacillus xylanus NBRC 15112]
gi|407726473|dbj|BAM46471.1| ATP-dependent RNA helicase [Amphibacillus xylanus NBRC 15112]
Length = 483
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 137/366 (37%), Positives = 216/366 (59%), Gaps = 7/366 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELN+S P+L+A +G+ + TPIQ IPL L G D+ G A TG+GKTAAF +P +E++
Sbjct: 6 ELNISAPILKALSNMGFEEATPIQEQTIPLGLKGEDVIGQAQTGTGKTAAFGIPMIEQIE 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ ++I L++ PTRELA+QV I +I +F IR + GG + Q +L+ P
Sbjct: 66 KKQRKIQG---LVVAPTRELAIQVSEEIHRIGKFKGIRSLPIYGGQQMQRQIRSLKEGPH 122
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IVVATPGR++DH+R ++++ D+ ++LDEAD +L +GF +I E++++ P RQT+LF
Sbjct: 123 IVVATPGRLLDHMRRK-TINISDVKTIVLDEADEMLNMGFIDDIREILKMIPHERQTLLF 181
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ +++ ++ + +P + + + + + ++ + L +L
Sbjct: 182 SATMPKEIRQIASTMMREPKEVKVKSKQLSVENIEQRFIEVHEKQKFD---ALTNLLDIH 238
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
IIF TK+ L +A +HG+LTQ +R+ L F+ ++ L+ATD
Sbjct: 239 VPELAIIFGRTKKRVDELTDGLQARGFRAEGIHGDLTQGKRMSVLNKFKNGRIEILVATD 298
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V V N+ P+D SYVHR+GRT RAG+ G A++F+T + LK I K
Sbjct: 299 VAARGLDISNVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAISFITPREMPHLKLIEKV 358
Query: 362 AGSKLK 367
+K+K
Sbjct: 359 TNAKVK 364
>gi|447917697|ref|YP_007398265.1| ATP-dependent RNA helicase [Pseudomonas poae RE*1-1-14]
gi|445201560|gb|AGE26769.1| ATP-dependent RNA helicase [Pseudomonas poae RE*1-1-14]
Length = 448
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 153/373 (41%), Positives = 222/373 (59%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 QFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +PD
Sbjct: 64 GPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTMLF
Sbjct: 124 ILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVSECVNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + +++ L P L + + +T +++V V++E +L L +
Sbjct: 183 SATTGGSTLRDMVAKVLNNPEHLQVNNVSDLNATTRQQIVMAD--HNVHKEQILNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ AA R+ KA LHG Q R A++ + V L+AT
Sbjct: 241 ETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I +
Sbjct: 301 DVAARGLDVDGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQSFERRTIKE 373
>gi|294139294|ref|YP_003555272.1| DEAD/DEAH box helicase [Shewanella violacea DSS12]
gi|293325763|dbj|BAJ00494.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
DSS12]
Length = 478
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 144/358 (40%), Positives = 218/358 (60%), Gaps = 7/358 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A + GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE LL
Sbjct: 6 LGLSAPILKAVASKGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE-LLS 64
Query: 63 RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
R R A +R L+LTPTRELA QV +E ++ ++ ++ GG+ Q + L
Sbjct: 65 RGNRAQAKKVRALVLTPTRELAAQVAESVETYGKYLPLKSAVIFGGVGIGPQISKLGKGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DI+VATPGR++D L N +V+ + L VLILDEADR+L++GF +I +++R+ P +RQ ++
Sbjct: 125 DILVATPGRLLD-LYNQGAVNFNQLEVLILDEADRMLDMGFIHDIKKILRVLPAKRQNLM 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++D+ +L K + P+ +S P ++ + + + + ++ A L+ L +
Sbjct: 184 FSATFSDDIRKLAKGLVNNPVEISVTPRNATAKSVEQYIYMVDQKQKT---AALIHLIKQ 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++FS TK A+R+ L AA +HGN +Q R +AL F+ V L+AT
Sbjct: 241 NDWKQVLVFSRTKHGANRIAKNLEANDLTAAAIHGNKSQGARTKALANFKNGAVRVLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
D+AARG+DI + V+N+ P YVHR+GRT RAG G AV+ V+ ++ LL+ I
Sbjct: 301 DIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSGDESKLLRDI 358
>gi|386342411|ref|YP_006038777.1| DEAD/DEAH box helicase [Shewanella baltica OS117]
gi|334864812|gb|AEH15283.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS117]
Length = 515
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/385 (38%), Positives = 229/385 (59%), Gaps = 12/385 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE LL
Sbjct: 6 LGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLE-LLS 64
Query: 63 RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+ R A +R L+LTPTRELA QV +E + +R ++ GG+ Q LR
Sbjct: 65 KGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRHGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D++VATPGR++D L N +V L +L+LDEADR+L++GF +I +++ + PK+RQ ++
Sbjct: 125 DVLVATPGRLMD-LYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLM 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++++ EL K + P+ +S P +T+ + V + + + + A+L+ L +
Sbjct: 184 FSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQ---KSALLIQLIKQ 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++FS TK A+RL A +KAA +HGN +Q R +AL F+ L+AT
Sbjct: 241 NDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V++ + LL I
Sbjct: 301 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLNDI-- 358
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQ 385
+L +R++ + + ++ ++ +
Sbjct: 359 ---ERLINRVLDREMVEGFNHVLPE 380
>gi|427789491|gb|JAA60197.1| Putative atp-dependent rna helicase ddx47 [Rhipicephalus
pulchellus]
Length = 465
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 156/408 (38%), Positives = 231/408 (56%), Gaps = 24/408 (5%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 68
L ACE L + PT IQ +P+AL GRD+ G A TGSGKTA+FALP L+ LL P+R+
Sbjct: 36 LCEACEQLKWKAPTKIQREALPVALQGRDVIGLAETGSGKTASFALPILQALLETPQRLF 95
Query: 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 128
A L+LTPTRELA Q+ E + ++ ++VGG+ Q L P +++ATPG
Sbjct: 96 A---LVLTPTRELAFQISEQFEALGASIGVKSAVIVGGIDMMTQALTLAKKPHVIIATPG 152
Query: 129 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 188
R++DHL N+ +L L L++DEADR+L + F E+ +++R+ P+ R+T L+SAT+T+
Sbjct: 153 RLVDHLENTKGFNLKSLKYLVMDEADRILNMDFEEEVDKILRVIPRERRTYLYSATMTKK 212
Query: 189 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSKTFTSKVI 247
V +L + SL P+++ + L + + I + ++V +L L +F +
Sbjct: 213 VQKLQRASLRDPVKVEVSSKYQTVEKLMQYYLFIPAKFKDVYLVHLLNELAGNSF----M 268
Query: 248 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 307
+F T R +L A LHG + QA+RL AL F+ ++ LIATDVA+RGL
Sbjct: 269 VFCSTCSNTQRTALLLRNLGFTAIPLHGQMGQAKRLGALTKFKSKNRSILIATDVASRGL 328
Query: 308 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 367
DI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I + G KL
Sbjct: 329 DIPHVDCVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRIEQLIGKKL- 387
Query: 368 SRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAEN 415
+ E +E++V +++ ER R A+ME + E+
Sbjct: 388 -------------PLYETVEEEVMSLV--ERVTEAQRFAKMELKEQED 420
>gi|398866146|ref|ZP_10621647.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM78]
gi|398241657|gb|EJN27303.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM78]
Length = 446
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 151/373 (40%), Positives = 223/373 (59%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 EFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +PD
Sbjct: 64 GPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTMLF
Sbjct: 124 ILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECTNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E++ L P L + ++ T ++++ + ++E ++ L +
Sbjct: 183 SATTGGSGLREMVAKVLNNPEHLQLNAVSQLNETTRQQIITADHNQ--HKEQIVNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ A R+ KA LHG+ Q R A++ ++ V L+AT
Sbjct: 241 ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGDKDQKDRKLAIDRLKQGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I +
Sbjct: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQSFERRTIKE 373
>gi|425898142|ref|ZP_18874733.1| DEAD/DEAH box helicase domain protein [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
gi|397891895|gb|EJL08373.1| DEAD/DEAH box helicase domain protein [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
Length = 445
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 150/373 (40%), Positives = 223/373 (59%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 QFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +PD
Sbjct: 64 GPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKAGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGR+I+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV CP R+QTMLF
Sbjct: 124 ILIGTPGRLIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVDECPNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E++ L P L + ++ T ++++ + ++E ++ L +
Sbjct: 183 SATTGGSGLREMVAKVLNNPEHLQLNAVSQLNDTTRQQIITADHNQ--HKEQIVNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+AT
Sbjct: 241 ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I +
Sbjct: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQNFERRTIKE 373
>gi|54302911|ref|YP_132904.1| ATP-dependent RNA helicase RhlE [Photobacterium profundum SS9]
gi|46916335|emb|CAG23104.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
SS9]
Length = 471
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 146/357 (40%), Positives = 213/357 (59%), Gaps = 5/357 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L A GY P+PIQA IP + G+D+ +A TG+GKTAAF LP LERL
Sbjct: 12 LGLSAPILEAVTKQGYETPSPIQAQAIPAVIEGKDVMAAAQTGTGKTAAFTLPVLERLSN 71
Query: 63 RPKRIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ P +R L+LTPTRELA QV + A+ + +V GG+ Q LR D
Sbjct: 72 GPRVKPNQVRALVLTPTRELAAQVAESVALYAKNLPLSSAVVFGGVKINPQMMRLRQGAD 131
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++D L N +V D + VL+LDEADR+L++GF +I +L+ PK+RQ +LF
Sbjct: 132 VLVATPGRLLD-LYNQRAVRFDQIEVLVLDEADRMLDMGFIRDIRKLLAAMPKQRQNLLF 190
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++++ +L K + P+ +S P T+ + + + + R+ N +L L +
Sbjct: 191 SATFSDEIRQLAKGLVNNPVEISVTPRNATAPTVKQWICPVDKSRKAN---LLTKLLKEN 247
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++F+ TK A+RL +KAA +HGN +Q R +AL F+ + L+ATD
Sbjct: 248 NWGQVLVFTKTKHGANRLTTHLEGRGIKAAAIHGNKSQGARTKALANFKSNEIQVLVATD 307
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
+AARGLDI + V+N+ P YVHR+GRT RAG EG A++ V ++ L AI
Sbjct: 308 IAARGLDIEQLPQVVNFELPHVAEDYVHRIGRTGRAGCEGQAISLVCADEYKDLAAI 364
>gi|293603664|ref|ZP_06686084.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
43553]
gi|292817932|gb|EFF76993.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
43553]
Length = 493
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 151/361 (41%), Positives = 220/361 (60%), Gaps = 12/361 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL++ GY+ PTPIQA IP+ + GRD+ G+A TG+GKTAAF +P L RL+
Sbjct: 21 DFGLHPLLLQSIAETGYTVPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTVPILHRLM 80
Query: 62 ------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
P R P +R LILTPTRELA QV +++ ++ T +R +V GG+ Q+ A
Sbjct: 81 PLANASASPARHP-VRALILTPTRELADQVFESVKRYSKQTPLRSAVVFGGVDIGPQKEA 139
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR +I+VATPGR++DH+ +V+L + +L+LDEADR+L++GF ++ ++RL P +
Sbjct: 140 LRRGCEILVATPGRLLDHVEQK-NVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQ 198
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQ +LFSAT + ++ +L + L +P+ + A R +T T +M + A ++
Sbjct: 199 RQGLLFSATFSNEIRKLGRSYLNQPVEIEV---AARNATATTITQIAYKMSSDAKRAAVV 255
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
L +VI+FS TK RL +KA +HG+ TQA R++ALE F+ ++
Sbjct: 256 HLVKSRGLKQVIVFSNTKIGTARLARELERDGVKAESIHGDKTQADRMKALEAFKAGDLE 315
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT-FVTDNDRSL 354
L+ATDVAARGLD+ GV VINY P + YVHR+GRT RAG G A+ F D +R L
Sbjct: 316 VLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPDEERFL 375
Query: 355 L 355
L
Sbjct: 376 L 376
>gi|217972086|ref|YP_002356837.1| DEAD/DEAH box helicase [Shewanella baltica OS223]
gi|217497221|gb|ACK45414.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
Length = 515
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/385 (38%), Positives = 229/385 (59%), Gaps = 12/385 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE LL
Sbjct: 6 LGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLE-LLS 64
Query: 63 RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+ R A +R L+LTPTRELA QV +E + +R ++ GG+ Q LR
Sbjct: 65 KGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRHGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D++VATPGR++D L N +V L +L+LDEADR+L++GF +I +++ + PK+RQ ++
Sbjct: 125 DVLVATPGRLMD-LYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLM 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++++ EL K + P+ +S P +T+ + V + + + + A+L+ L +
Sbjct: 184 FSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQ---KSALLIQLIKQ 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++FS TK A+RL A +KAA +HGN +Q R +AL F+ L+AT
Sbjct: 241 NDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V++ + LL I
Sbjct: 301 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLNDI-- 358
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQ 385
+L +R++ + + ++ ++ +
Sbjct: 359 ---ERLINRVLDREMVEGFNHVLPE 380
>gi|373950799|ref|ZP_09610760.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
gi|386323368|ref|YP_006019485.1| DEAD/DEAH box helicase [Shewanella baltica BA175]
gi|333817513|gb|AEG10179.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
gi|373887399|gb|EHQ16291.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
Length = 515
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/385 (38%), Positives = 229/385 (59%), Gaps = 12/385 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE LL
Sbjct: 6 LGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLE-LLS 64
Query: 63 RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+ R A +R L+LTPTRELA QV +E + +R ++ GG+ Q LR
Sbjct: 65 KGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRHGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D++VATPGR++D L N +V L +L+LDEADR+L++GF +I +++ + PK+RQ ++
Sbjct: 125 DVLVATPGRLMD-LYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLM 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++++ EL K + P+ +S P +T+ + V + + + + A+L+ L +
Sbjct: 184 FSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQ---KSALLIQLIKQ 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++FS TK A+RL A +KAA +HGN +Q R +AL F+ L+AT
Sbjct: 241 NDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V++ + LL I
Sbjct: 301 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLNDI-- 358
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQ 385
+L +R++ + + ++ ++ +
Sbjct: 359 ---ERLINRVLDREMVEGFNHVLPE 380
>gi|399004628|ref|ZP_10707239.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM17]
gi|398129239|gb|EJM18612.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM17]
Length = 445
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 150/373 (40%), Positives = 223/373 (59%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 QFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +PD
Sbjct: 64 GPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKAGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGR+I+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV CP R+QTMLF
Sbjct: 124 ILIGTPGRLIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVDECPNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E++ L P L + ++ T ++++ + ++E ++ L +
Sbjct: 183 SATTGGSGLREMVAKVLNNPEHLQLNAVSQLNDTTRQQIITADHNQ--HKEQIVNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+AT
Sbjct: 241 ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I +
Sbjct: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQNFERRTIKE 373
>gi|440736789|ref|ZP_20916374.1| ATP-dependent RNA helicase [Pseudomonas fluorescens BRIP34879]
gi|440382721|gb|ELQ19213.1| ATP-dependent RNA helicase [Pseudomonas fluorescens BRIP34879]
Length = 448
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 153/373 (41%), Positives = 222/373 (59%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 QFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +PD
Sbjct: 64 GPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTMLF
Sbjct: 124 ILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVSECVNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + +++ L P L + + +T +++V V++E +L L +
Sbjct: 183 SATTGGSTLRDMVAKVLNNPEHLQVNNVSDLNATTRQQIVMAD--HNVHKEQILNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ AA R+ KA LHG Q R A++ + V L+AT
Sbjct: 241 ETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I +
Sbjct: 301 DVAARGLDVDGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQSFERRTIKE 373
>gi|325191409|emb|CCA26186.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 463
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/376 (39%), Positives = 214/376 (56%), Gaps = 8/376 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L A +LG+SKP+ IQ IP L GRD+ G A TGSGKT AF +P L+ LL
Sbjct: 33 QLGVDATLCEAIASLGWSKPSKIQQEAIPHGLAGRDLIGLAETGSGKTGAFVIPILQSLL 92
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R+ A L+L PTRELA Q+ E + ++C VVGG+ Q+ AL P
Sbjct: 93 RSPQRLYA---LVLAPTRELAYQISEQFEALGASIGLKCACVVGGIDMMNQQIALARKPH 149
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++DHL N+ L + L+LDEADR+L + F EI+++V+L P R T LF
Sbjct: 150 IIIATPGRLVDHLENTKGFSLRTIKFLVLDEADRMLSMDFEEEINQIVQLMPSERNTYLF 209
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T V +L + SL P+++ P L + + I + ++ +L + +
Sbjct: 210 SATMTSKVAKLQRASLLNPIKIEITHKFATPENLRQHYLFIPAKFKDCYLSYILNEVAGQ 269
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+ ++IF+ T ++ ++ +A LHG ++Q RL AL F+ + L+ T
Sbjct: 270 S----ILIFASTCNGTQKVTLMLRNLGFQAICLHGQMSQPNRLGALNKFKAKTRKILVCT 325
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+NY P Y+HRVGRTARAGR G AV+FVT D L + I
Sbjct: 326 DVASRGLDIPSVDVVMNYDIPTHGKDYIHRVGRTARAGRAGIAVSFVTQYDVELYQRIEF 385
Query: 361 RAGSKLKSRIVAEQSI 376
G KL + EQ++
Sbjct: 386 LLGKKLDAYPCDEQTV 401
>gi|388468344|ref|ZP_10142554.1| DEAD/DEAH box helicase domain protein [Pseudomonas synxantha BG33R]
gi|388011924|gb|EIK73111.1| DEAD/DEAH box helicase domain protein [Pseudomonas synxantha BG33R]
Length = 448
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 152/373 (40%), Positives = 222/373 (59%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 QFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPVLNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ +QFT I+ ++ GG K+Q LR +PD
Sbjct: 64 GPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGIITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTMLF
Sbjct: 124 ILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVAECVNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + +++ L P L + + +T +++V V++E +L L +
Sbjct: 183 SATTGGSTLRDMVAKVLNNPEHLQVNNVSDLNATTRQQIVTAD--HNVHKEQILNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ AA R+ KA LHG Q R A++ + V L+AT
Sbjct: 241 ETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I +
Sbjct: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQSFERRTIKE 373
>gi|386818532|ref|ZP_10105750.1| DEAD/DEAH box helicase domain protein [Thiothrix nivea DSM 5205]
gi|386423108|gb|EIJ36943.1| DEAD/DEAH box helicase domain protein [Thiothrix nivea DSM 5205]
Length = 446
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 151/362 (41%), Positives = 214/362 (59%), Gaps = 9/362 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L+ PLLRA GY+ PTPIQ IP L+GRD+ +A TG+GKTA F LP L RL+
Sbjct: 5 ELGLAEPLLRAIAEQGYATPTPIQQQGIPAVLSGRDLMAAAQTGTGKTAGFTLPMLHRLM 64
Query: 62 YRPKRIPA---IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
+ PA IR L+LTPTRELA QV + + +V GG+S Q ALR
Sbjct: 65 E--GKRPASNHIRALVLTPTRELAAQVGESVRDYGAHLPLASTIVFGGVSINPQMMALRK 122
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
D++VATPGR++D L +V + +L+LDEADR+L++GF +I +++ L PKRRQ
Sbjct: 123 GVDVLVATPGRLLD-LYEQNAVKFSQVEMLVLDEADRMLDMGFIRDIRKILALLPKRRQN 181
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
+LFSAT ++D+ L K L PL++S P +T+ + V I + R+ A+L L
Sbjct: 182 LLFSATFSDDITALAKGLLHDPLQVSVSPRNAAANTVKQSVYLIDKARKT---ALLSHLV 238
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+V++F+ TK A+RL + AA +HGN +Q R +AL F++ ++ L+
Sbjct: 239 RDNQWEQVLVFTRTKHGANRLAEKLARDGVTAAAIHGNKSQGARTKALADFKQNNIRVLV 298
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+AARG+DI + V+N+ P YVHR+GRT RAG G A++ V + LK I
Sbjct: 299 ATDIAARGIDIDQLPHVVNFELPNVSEDYVHRIGRTGRAGASGEAISLVEPEEHKYLKGI 358
Query: 359 AK 360
K
Sbjct: 359 EK 360
>gi|346642808|ref|YP_258676.2| DEAD/DEAH box helicase [Pseudomonas protegens Pf-5]
gi|341579950|gb|AAY90832.2| DEAD/DEAH box helicase domain protein [Pseudomonas protegens Pf-5]
Length = 446
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 150/373 (40%), Positives = 223/373 (59%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 QFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +PD
Sbjct: 64 GPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGRM++ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV CP R+QTMLF
Sbjct: 124 ILIGTPGRMLEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E++ L P L + ++ T ++++ + ++E ++ L +
Sbjct: 183 SATTGGSGLREMVAKVLNNPEHLQLNSVSQLNETTRQQIITADHNQ--HKEQIVNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+AT
Sbjct: 241 ETYQKAIVFTNTRAMADRIYGRLVAQDYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I +
Sbjct: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQSFERRTIKE 373
>gi|387894976|ref|YP_006325273.1| DEAD/DEAH box helicase [Pseudomonas fluorescens A506]
gi|387163383|gb|AFJ58582.1| DEAD/DEAH box helicase domain protein [Pseudomonas fluorescens
A506]
Length = 448
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 152/373 (40%), Positives = 222/373 (59%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 QFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPVLNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ +QFT I+ ++ GG K+Q LR +PD
Sbjct: 64 GPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGIITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTMLF
Sbjct: 124 ILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVGECVNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + +++ L P L + + +T +++V V++E +L L +
Sbjct: 183 SATTGGSTLRDMVAKVLNNPEHLQVNNVSDLNATTRQQIVTAD--HNVHKEQILNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ AA R+ KA LHG Q R A++ + V L+AT
Sbjct: 241 ETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I +
Sbjct: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQSFERRTIKE 373
>gi|421165295|ref|ZP_15623631.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa ATCC 700888]
gi|404542268|gb|EKA51594.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa ATCC 700888]
Length = 639
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 153/369 (41%), Positives = 214/369 (57%), Gaps = 19/369 (5%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL- 61
L LS L RA EA GYS+PTP+Q IP L GRD+ +A TG+GKT FALP LERL
Sbjct: 6 LGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFP 65
Query: 62 ---------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 112
+ P++ RVL+LTPTRELA QVH + A+ + + GG+ Q
Sbjct: 66 AGHPDREHRHGPRQA---RVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMNPQ 122
Query: 113 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172
AL D++VA PGR++D L VDL + +L+LDEADR+L++GF ++ +++
Sbjct: 123 IQALAKGVDVLVACPGRLLD-LAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKL 181
Query: 173 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMREVNQE 231
P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+ +
Sbjct: 182 PPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTP----PNTTVERIEQRVFRLPAPQKR 237
Query: 232 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 291
A+L L + +V++F+ TK A+RL L AA +HGN +Q R +AL F+
Sbjct: 238 ALLAHLVTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297
Query: 292 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
V L+ATD+AARGLDI + V+NY P YVHR+GRT RAGR G A++ V ++
Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357
Query: 352 RSLLKAIAK 360
LLKAI K
Sbjct: 358 EKLLKAIEK 366
>gi|423692871|ref|ZP_17667391.1| DEAD/DEAH box helicase domain protein [Pseudomonas fluorescens
SS101]
gi|387997844|gb|EIK59173.1| DEAD/DEAH box helicase domain protein [Pseudomonas fluorescens
SS101]
Length = 448
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 152/373 (40%), Positives = 222/373 (59%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 QFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPVLNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ +QFT I+ ++ GG K+Q LR +PD
Sbjct: 64 GPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGIITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTMLF
Sbjct: 124 ILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVGECVNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + +++ L P L + + +T +++V V++E +L L +
Sbjct: 183 SATTGGSTLRDMVAKVLNNPEHLQVNNVSDLNATTRQQIVTAD--HNVHKEQILNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ AA R+ KA LHG Q R A++ + V L+AT
Sbjct: 241 ETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I +
Sbjct: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQSFERRTIKE 373
>gi|378707268|ref|YP_005272162.1| DEAD/DEAH box helicase [Shewanella baltica OS678]
gi|418024343|ref|ZP_12663326.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|315266257|gb|ADT93110.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
gi|353536303|gb|EHC05862.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
Length = 514
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/385 (38%), Positives = 229/385 (59%), Gaps = 12/385 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE LL
Sbjct: 6 LGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLE-LLS 64
Query: 63 RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+ R A +R L+LTPTRELA QV +E + +R ++ GG+ Q LR
Sbjct: 65 KGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRHGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D++VATPGR++D L N +V L +L+LDEADR+L++GF +I +++ + PK+RQ ++
Sbjct: 125 DVLVATPGRLMD-LYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLM 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++++ EL K + P+ +S P +T+ + V + + + + A+L+ L +
Sbjct: 184 FSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQ---KSALLIQLIKQ 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++FS TK A+RL A +KAA +HGN +Q R +AL F+ L+AT
Sbjct: 241 NDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V++ + LL I
Sbjct: 301 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLNDI-- 358
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQ 385
+L +R++ + + ++ ++ +
Sbjct: 359 ---ERLINRVLDREMVEGFNHVLPE 380
>gi|257440057|ref|ZP_05615812.1| putative ATP-dependent RNA helicase RhlE [Faecalibacterium
prausnitzii A2-165]
gi|257197409|gb|EEU95693.1| DEAD/DEAH box helicase [Faecalibacterium prausnitzii A2-165]
Length = 641
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 149/385 (38%), Positives = 221/385 (57%), Gaps = 14/385 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNLS P+LRA GY P+PIQAA IP L GRD+ G A TG+GKTAAFALP L+RL
Sbjct: 5 ELNLSAPVLRAVAQAGYESPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPMLDRLT 64
Query: 62 YR-PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
P++ AIR LILTPTRELA+Q+ E ++ +R ++ GG+ Q AL+
Sbjct: 65 ASAPRKKGAIRALILTPTRELALQIGESFEAYGKYLTLRSTVIFGGVGQAPQVAALKKGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DI++A PGR+ D + + +DL ++ + +LDEADR+L++GF ++ +++ P++RQ ++
Sbjct: 125 DILIACPGRLNDLVGQGL-LDLSNIEIFVLDEADRMLDMGFVHDVKKVIAKLPRQRQNLM 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+ +++++L L P + DP S+ + + + E + LL K
Sbjct: 184 FSATMPKEIEQLAAGILHDPAFVKVDPV----SSTVDRIQQSLYFVEKGNKKFLLPWLIK 239
Query: 241 TFTSKVI---IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
+V+ +FS TK A ++ + AA +HGN +Q R+ ALE F+ L
Sbjct: 240 NLKPEVVNALVFSRTKHGADKIAKDLNKQGIPAAAIHGNKSQTARVTALEDFKAGKTRVL 299
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATD+AARG+DI + V NY P +YVHR+GRTARAG +G AV+F ++ L
Sbjct: 300 VATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEKEYLAG 359
Query: 358 IAKRAGSKLKSRIVAEQSITKWSKI 382
I KL R + S W +
Sbjct: 360 I-----EKLNRRQIPVVSGHPWDGV 379
>gi|452751177|ref|ZP_21950923.1| ATP-dependent RNA helicase RhlE [alpha proteobacterium JLT2015]
gi|451961327|gb|EMD83737.1| ATP-dependent RNA helicase RhlE [alpha proteobacterium JLT2015]
Length = 591
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 154/362 (42%), Positives = 220/362 (60%), Gaps = 8/362 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ NLS + A + GY PTPIQA IP+ L+GRD+ G A TG+GKTAAFALP L RL
Sbjct: 6 DFNLSPKIAEAVASEGYETPTPIQAQAIPIGLSGRDLLGIAQTGTGKTAAFALPILNRLA 65
Query: 62 YRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
P ++ A RVL+L PTRELA Q+ + + V GG+ Q+ L +
Sbjct: 66 EEPYKLTPKAPRVLVLAPTRELATQIAESFRTYGRKLRLNIETVFGGVKDGPQKRRLAAG 125
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
DI+VATPGR++D L + ++ L ++ VL+LDEAD++L+LGF + ++V + PK RQT+
Sbjct: 126 VDILVATPGRLLD-LIDQRALSLHEVQVLVLDEADQMLDLGFIHALRKIVPMVPKTRQTL 184
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC- 238
FSAT+ + + EL LT P ++ P ST E V + ++ LL+L
Sbjct: 185 FFSATMPKQISELAGKYLTNPAKVEVQPE----STTAERVEQRCTFVNAKEKQALLTLTL 240
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+T +V++F+ TK A R+ A +++A +HGN +QAQR AL+ FR+ V L+
Sbjct: 241 ERTEFDRVLVFTRTKHGADRVVRNLEGADIRSAAIHGNKSQAQRTRALDAFREGKVRVLV 300
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+AARG+DI GV VIN+ P YVHR+GRTARAG +G A++FV +++S KAI
Sbjct: 301 ATDIAARGIDISGVSHVINFEIPEVPEQYVHRIGRTARAGADGEAISFVAPDEKSDWKAI 360
Query: 359 AK 360
K
Sbjct: 361 EK 362
>gi|355646721|ref|ZP_09054594.1| hypothetical protein HMPREF1030_03680 [Pseudomonas sp. 2_1_26]
gi|354828441|gb|EHF12563.1| hypothetical protein HMPREF1030_03680 [Pseudomonas sp. 2_1_26]
Length = 639
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 153/369 (41%), Positives = 214/369 (57%), Gaps = 19/369 (5%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL- 61
L LS L RA EA GYS+PTP+Q IP L GRD+ +A TG+GKT FALP LERL
Sbjct: 6 LGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFP 65
Query: 62 ---------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 112
+ P++ RVL+LTPTRELA QVH + A+ + + GG+ Q
Sbjct: 66 AGHPDREHRHGPRQA---RVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMNPQ 122
Query: 113 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172
AL D++VA PGR++D L VDL + +L+LDEADR+L++GF ++ +++
Sbjct: 123 IQALAKGVDVLVACPGRLLD-LAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKL 181
Query: 173 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMREVNQE 231
P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+ +
Sbjct: 182 PPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTP----PNTTVERIEQRVFRLPAPQKR 237
Query: 232 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 291
A+L L + +V++F+ TK A+RL L AA +HGN +Q R +AL F+
Sbjct: 238 ALLAHLVTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297
Query: 292 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
V L+ATD+AARGLDI + V+NY P YVHR+GRT RAGR G A++ V ++
Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357
Query: 352 RSLLKAIAK 360
LLKAI K
Sbjct: 358 EKLLKAIEK 366
>gi|163851993|ref|YP_001640036.1| DEAD/DEAH box helicase [Methylobacterium extorquens PA1]
gi|240139120|ref|YP_002963595.1| RNA helicase [Methylobacterium extorquens AM1]
gi|163663598|gb|ABY30965.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
PA1]
gi|240009092|gb|ACS40318.1| RNA helicase [Methylobacterium extorquens AM1]
Length = 510
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 146/359 (40%), Positives = 220/359 (61%), Gaps = 6/359 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L++P+LRA E GY PTPIQA +P A+ GRD+CG A TG+GKTAAFALP L RL
Sbjct: 6 DFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHRLS 65
Query: 62 YRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
+R P RVL+L+PTRELA Q+ + +V GG++ QE A+
Sbjct: 66 LDSRRAPRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQERAIAPG 125
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
DI+VATPGR+ID L + ++ L+ + +L+LDEAD++L+LGF + +V++ P +RQ++
Sbjct: 126 VDILVATPGRLID-LVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAKRQSL 184
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
FSAT+ +++ L L+ P++++ P A + ++V+ ++A+L +
Sbjct: 185 FFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFCH---TGAKQALLNHVLR 241
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+V++F+ TK A R+ A++ +A +HGN +Q QR AL FR L+A
Sbjct: 242 DPKIERVLVFTRTKHGADRVVRGLDKASVVSAAIHGNKSQPQRERALAAFRDGSCRVLVA 301
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
TD+AARG+D+ GV V+NY P SYVHR+GRTARAG EG A++F D +R+ L+ I
Sbjct: 302 TDIAARGIDVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRDI 360
>gi|254243526|ref|ZP_04936848.1| hypothetical protein PA2G_04344 [Pseudomonas aeruginosa 2192]
gi|421151495|ref|ZP_15611108.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa ATCC 14886]
gi|126196904|gb|EAZ60967.1| hypothetical protein PA2G_04344 [Pseudomonas aeruginosa 2192]
gi|404527251|gb|EKA37420.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa ATCC 14886]
Length = 639
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 153/369 (41%), Positives = 214/369 (57%), Gaps = 19/369 (5%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL- 61
L LS L RA EA GYS+PTP+Q IP L GRD+ +A TG+GKT FALP LERL
Sbjct: 6 LGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFP 65
Query: 62 ---------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 112
+ P++ RVL+LTPTRELA QVH + A+ + + GG+ Q
Sbjct: 66 AGHPDREHRHGPRQA---RVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMNPQ 122
Query: 113 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172
AL D++VA PGR++D L VDL + +L+LDEADR+L++GF ++ +++
Sbjct: 123 IQALAKGVDVLVACPGRLLD-LAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKL 181
Query: 173 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMREVNQE 231
P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+ +
Sbjct: 182 PPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTP----PNTTVERIEQRVFRLPAPQKR 237
Query: 232 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 291
A+L L + +V++F+ TK A+RL L AA +HGN +Q R +AL F+
Sbjct: 238 ALLAHLVTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297
Query: 292 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
V L+ATD+AARGLDI + V+NY P YVHR+GRT RAGR G A++ V ++
Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357
Query: 352 RSLLKAIAK 360
LLKAI K
Sbjct: 358 EKLLKAIEK 366
>gi|404448789|ref|ZP_11013781.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
gi|403765513|gb|EJZ26391.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
Length = 398
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 144/366 (39%), Positives = 214/366 (58%), Gaps = 6/366 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
L L P+L+A GY+ PTPIQ IPL L G D+ G A TG+GKTAAF++P ++ L
Sbjct: 5 NLPLIEPILKAVAQEGYTTPTPIQQKAIPLVLDGNDLLGCAQTGTGKTAAFSIPIIQLLS 64
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + P I+ LILTPTRELA+Q++ + +FT IR ++ GG+S Q AL+ D
Sbjct: 65 TQKQSRPGIKALILTPTRELAIQINESLASYGKFTKIRHTVIFGGVSQLHQTNALKRGVD 124
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++D L N +DL L + +LDEADR+L++GF ++ +L+ + P +RQT+ F
Sbjct: 125 ILVATPGRLLD-LINQKYIDLRHLEIFVLDEADRMLDMGFIHDVKKLINIIPTKRQTLFF 183
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA-VLLSLCSK 240
SAT+ ++ +L L P + P PS+ E++ + N +A +L+ L K
Sbjct: 184 SATMPSEIQKLADTLLKNPKYVEVTP----PSSTVEKITQKLYFTNKNDKAKLLIHLLEK 239
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
++F TK + ++ L +KAA +HGN +Q R AL F+ + L+AT
Sbjct: 240 ENIGSALVFGRTKHGSDKVVKLLQREGIKAAAIHGNKSQNARQNALNDFKNGKIRILVAT 299
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARG+DI + TV NY P +YVHR+GRT RAG G A++F + + I K
Sbjct: 300 DIAARGIDIDELATVFNYDLPNIPETYVHRIGRTGRAGNSGVAISFADQDTMKEYRDIEK 359
Query: 361 RAGSKL 366
G K+
Sbjct: 360 LIGIKI 365
>gi|229591936|ref|YP_002874055.1| ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
gi|229363802|emb|CAY51237.1| ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
Length = 456
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 154/373 (41%), Positives = 222/373 (59%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 12 QFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPILNRLI 71
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +PD
Sbjct: 72 GPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPD 131
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTMLF
Sbjct: 132 ILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVAECINRQQTMLF 190
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E++ L P L + + +T +++V V++E +L L +
Sbjct: 191 SATTGGSTLREMVAKVLNNPEHLQVNNVSDLNATTRQQIVTAD--HNVHKEQILNWLLAN 248
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ AA R+ KA LHG Q R A++ + V L+AT
Sbjct: 249 ETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVKILVAT 308
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I +
Sbjct: 309 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 368
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 369 YLKQSFERRTIKE 381
>gi|24375277|ref|NP_719320.1| ATP-dependent RNA helicase RhlE [Shewanella oneidensis MR-1]
gi|24350080|gb|AAN56764.1| ATP-dependent RNA helicase RhlE [Shewanella oneidensis MR-1]
Length = 535
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 149/381 (39%), Positives = 224/381 (58%), Gaps = 10/381 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS PL +A GY P+PIQA IP LTG+D+ +A TG+GKTA F LP LE L
Sbjct: 6 LGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLELLAK 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K + R L+LTPTRELA QV +E ++ +R +V GG+ Q LR D
Sbjct: 66 GHKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKLRHGVD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++D L +V + L +L+LDEADR+L++GF +I +++ L P +RQ ++F
Sbjct: 126 VLVATPGRLLD-LVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQNLMF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++++ EL K + P+ +S P +T+ + + + + + + A+L+ L +
Sbjct: 185 SATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQ---KSALLIQLIKQE 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++FS TK A+RL A + AA +HGN +Q R +AL F+ V L+ATD
Sbjct: 242 NWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V+ + LLK I
Sbjct: 302 IAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKDI--- 358
Query: 362 AGSKLKSRIVAEQSITKWSKI 382
+L +R++ Q + +S +
Sbjct: 359 --ERLINRVLERQEVEGFSPV 377
>gi|226295334|gb|EEH50754.1| ATP-dependent RNA helicase drs1 [Paracoccidioides brasiliensis
Pb18]
Length = 755
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 123/236 (52%), Positives = 170/236 (72%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
+LSRP+LR ++G++ PTPIQ IP+AL G+D+ G A+TGSGKT AF +P LERLLY
Sbjct: 304 FSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILERLLY 363
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
RP+++P RV IL PTRELAVQ ++ K+A +TDI C +VGG S + QE L+ PD+
Sbjct: 364 RPRKVPTSRVAILMPTRELAVQCCNVATKLATYTDITFCQLVGGFSLREQENILKKRPDV 423
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFS
Sbjct: 424 IIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFS 483
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
AT+T +D+LI++ L +P+RL D + TL +E VR+R RE + L++LC
Sbjct: 484 ATMTNTIDKLIRVGLNRPVRLMVDAQKQTVGTLVQEFVRLRPGREDKRLGYLIALC 539
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/135 (51%), Positives = 96/135 (71%), Gaps = 3/135 (2%)
Query: 307 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---G 363
LDI GV+TVINY P+ Y+HRVGRTARAGR G A T ++DR ++KA K G
Sbjct: 544 LDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAESDRKVVKAAVKTGRAQG 603
Query: 364 SKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEI 423
+K+ SR++ KW+ +E+MED+V IL+EE+EE+ L +AEME T+ N+I+H+++I
Sbjct: 604 AKIVSRLIDVAEADKWAAKVEEMEDEVKEILKEEKEEKQLAQAEMEVTRGSNLISHEKDI 663
Query: 424 FARPKRTWFVTEKEK 438
+RPKRTWF +EKEK
Sbjct: 664 MSRPKRTWFESEKEK 678
>gi|311104225|ref|YP_003977078.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
gi|310758914|gb|ADP14363.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
Length = 493
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 149/361 (41%), Positives = 221/361 (61%), Gaps = 12/361 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL++ GY+ PTPIQA IP+ + GRD+ G+A TG+GKTAAF LP L RL+
Sbjct: 21 DFGLHPLLLQSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHRLM 80
Query: 62 ------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
P R P +R LILTPTRELA QV+ +++ ++ T +R +V GG+ Q+ A
Sbjct: 81 PLANTSASPARHP-VRALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQKEA 139
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR +++VATPGR++DH+ +V+L + +L+LDEADR+L++GF ++ ++RL P +
Sbjct: 140 LRRGCEVLVATPGRLLDHVEQK-NVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQ 198
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQ +LFSAT + ++ +L + L P+ + +T+T+ + M + A ++
Sbjct: 199 RQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATANTITQIAYK---MPSDAKRAAVV 255
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
L ++VI+FS TK RL +KA +HG+ TQA R++ALE F+ ++
Sbjct: 256 HLVKSRGLNQVIVFSNTKIGTARLARDLERDGVKAESIHGDKTQADRMKALEAFKAGELE 315
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT-FVTDNDRSL 354
L+ATDVAARGLD+ GV VINY P + YVHR+GRT RAG G A+ F D +R L
Sbjct: 316 VLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPDEERFL 375
Query: 355 L 355
L
Sbjct: 376 L 376
>gi|296386927|ref|ZP_06876426.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1]
gi|416874952|ref|ZP_11918445.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa 152504]
gi|334842505|gb|EGM21111.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa 152504]
Length = 639
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 153/369 (41%), Positives = 214/369 (57%), Gaps = 19/369 (5%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL- 61
L LS L RA EA GYS+PTP+Q IP L GRD+ +A TG+GKT FALP LERL
Sbjct: 6 LGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFP 65
Query: 62 ---------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 112
+ P++ RVL+LTPTRELA QVH + A+ + + GG+ Q
Sbjct: 66 AGHPDREHRHGPRQA---RVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMNPQ 122
Query: 113 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172
AL D++VA PGR++D L VDL + +L+LDEADR+L++GF ++ +++
Sbjct: 123 IQALAKGVDVLVACPGRLLD-LAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKL 181
Query: 173 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMREVNQE 231
P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+ +
Sbjct: 182 PPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTP----PNTTVERIEQRVFRLPAPQKR 237
Query: 232 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 291
A+L L + +V++F+ TK A+RL L AA +HGN +Q R +AL F+
Sbjct: 238 ALLAHLVTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297
Query: 292 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
V L+ATD+AARGLDI + V+NY P YVHR+GRT RAGR G A++ V ++
Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357
Query: 352 RSLLKAIAK 360
LLKAI K
Sbjct: 358 EKLLKAIEK 366
>gi|331005215|ref|ZP_08328608.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC1989]
gi|330420958|gb|EGG95231.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC1989]
Length = 464
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 146/358 (40%), Positives = 220/358 (61%), Gaps = 7/358 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A GY P+PIQA IP+ L GRD+ +A TG+GKTA F LP LE L
Sbjct: 6 LGLSDPILKAVTDKGYDTPSPIQAKAIPVVLEGRDVMAAAQTGTGKTAGFTLPLLEILSK 65
Query: 63 -RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P R +R L+LTPTRELA QV +E + +R +V GG+ Q LR D
Sbjct: 66 GQPARANQVRALVLTPTRELAAQVAESVETYGKHLKLRSAVVFGGVKINPQMMKLRGGVD 125
Query: 122 IVVATPGRMID-HLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
I++ATPGR++D H +N+MS + L +LILDEADR+L++GF +I ++++ P++RQ ++
Sbjct: 126 ILIATPGRLLDLHQQNAMS--FNKLEILILDEADRMLDMGFINDIRKILKALPEKRQNLM 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++D+ +L K + KP+ +S P +T+T+ + + + + + ++L+ L +
Sbjct: 184 FSATFSDDIRDLAKTIVNKPIEISVTPKNSTATTVTQWIHPVDKKQ---KPSLLVELIYQ 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++FS TK A++L ++KAA +HGN +Q R AL F+ V L+AT
Sbjct: 241 HKWEQVLVFSRTKHGANKLATFLEKHSIKAAAIHGNKSQGARTRALADFKAGKVRVLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
D+AARGLDI + V+N P YVHR+GRT RAG G AV+ V+ ++ L+ I
Sbjct: 301 DIAARGLDIEQLPQVVNIDLPNVAEDYVHRIGRTGRAGATGQAVSLVSADEIQQLQDI 358
>gi|420137008|ref|ZP_14645012.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa CIG1]
gi|403250242|gb|EJY63694.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa CIG1]
Length = 639
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 153/369 (41%), Positives = 214/369 (57%), Gaps = 19/369 (5%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL- 61
L LS L RA EA GYS+PTP+Q IP L GRD+ +A TG+GKT FALP LERL
Sbjct: 6 LGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFP 65
Query: 62 ---------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 112
+ P++ RVL+LTPTRELA QVH + A+ + + GG+ Q
Sbjct: 66 AGHPDREHRHGPRQA---RVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMNPQ 122
Query: 113 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172
AL D++VA PGR++D L VDL + +L+LDEADR+L++GF ++ +++
Sbjct: 123 IQALAKGVDVLVACPGRLLD-LAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKL 181
Query: 173 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMREVNQE 231
P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+ +
Sbjct: 182 PPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTP----PNTTVERIEQRVFRLPAPQKR 237
Query: 232 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 291
A+L L + +V++F+ TK A+RL L AA +HGN +Q R +AL F+
Sbjct: 238 ALLAHLVTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297
Query: 292 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
V L+ATD+AARGLDI + V+NY P YVHR+GRT RAGR G A++ V ++
Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357
Query: 352 RSLLKAIAK 360
LLKAI K
Sbjct: 358 EKLLKAIEK 366
>gi|195352029|ref|XP_002042518.1| GM23393 [Drosophila sechellia]
gi|194124387|gb|EDW46430.1| GM23393 [Drosophila sechellia]
Length = 519
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 145/366 (39%), Positives = 213/366 (58%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ L +AC+ L + P+ IQ IP+AL G+D+ G A TGSGKT AFALP L LL
Sbjct: 69 DLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALL 128
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A L+LTPTRELA Q+ E + I+CC+VVGG+ Q L P
Sbjct: 129 ENPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 185
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++DHL N +L + L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 186 IIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 245
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSK 240
SAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 246 SATMTKKVKKLQRASLKDPVKIEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGN 305
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T + ++ L A LHG ++Q +RL AL F+ ++ LI+T
Sbjct: 306 SF----MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKTKNRSILIST 361
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+T V+ D L + I
Sbjct: 362 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEH 421
Query: 361 RAGSKL 366
G +L
Sbjct: 422 LLGKQL 427
>gi|195580593|ref|XP_002080120.1| GD24302 [Drosophila simulans]
gi|194192129|gb|EDX05705.1| GD24302 [Drosophila simulans]
Length = 519
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 145/366 (39%), Positives = 213/366 (58%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ L +AC+ L + P+ IQ IP+AL G+D+ G A TGSGKT AFALP L LL
Sbjct: 69 DLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALL 128
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A L+LTPTRELA Q+ E + I+CC+VVGG+ Q L P
Sbjct: 129 ENPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 185
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++DHL N +L + L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 186 IIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 245
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSK 240
SAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 246 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGN 305
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T + ++ L A LHG ++Q +RL AL F+ ++ LI+T
Sbjct: 306 SF----MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKTKNRSILIST 361
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+T V+ D L + I
Sbjct: 362 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEH 421
Query: 361 RAGSKL 366
G +L
Sbjct: 422 LLGKQL 427
>gi|15595625|ref|NP_249119.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
gi|386056497|ref|YP_005973019.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa M18]
gi|392981840|ref|YP_006480427.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa DK2]
gi|416856277|ref|ZP_11911921.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa 138244]
gi|418588420|ref|ZP_13152432.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa MPAO1/P1]
gi|418593498|ref|ZP_13157343.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa MPAO1/P2]
gi|419755910|ref|ZP_14282262.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PADK2_CF510]
gi|421178338|ref|ZP_15635953.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa E2]
gi|421515044|ref|ZP_15961730.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO579]
gi|424943154|ref|ZP_18358917.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa
NCMG1179]
gi|9946285|gb|AAG03817.1|AE004480_1 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
gi|334842152|gb|EGM20765.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa 138244]
gi|346059600|dbj|GAA19483.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa
NCMG1179]
gi|347302803|gb|AEO72917.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa M18]
gi|375040816|gb|EHS33548.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa MPAO1/P1]
gi|375047589|gb|EHS40133.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa MPAO1/P2]
gi|384397572|gb|EIE43983.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PADK2_CF510]
gi|392317345|gb|AFM62725.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa DK2]
gi|404348772|gb|EJZ75109.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO579]
gi|404548668|gb|EKA57615.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa E2]
gi|453045807|gb|EME93525.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PA21_ST175]
Length = 639
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 153/369 (41%), Positives = 214/369 (57%), Gaps = 19/369 (5%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL- 61
L LS L RA EA GYS+PTP+Q IP L GRD+ +A TG+GKT FALP LERL
Sbjct: 6 LGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFP 65
Query: 62 ---------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 112
+ P++ RVL+LTPTRELA QVH + A+ + + GG+ Q
Sbjct: 66 AGHPDREHRHGPRQA---RVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMNPQ 122
Query: 113 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172
AL D++VA PGR++D L VDL + +L+LDEADR+L++GF ++ +++
Sbjct: 123 IQALAKGVDVLVACPGRLLD-LAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKL 181
Query: 173 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMREVNQE 231
P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+ +
Sbjct: 182 PPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTP----PNTTVERIEQRVFRLPAPQKR 237
Query: 232 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 291
A+L L + +V++F+ TK A+RL L AA +HGN +Q R +AL F+
Sbjct: 238 ALLAHLVTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297
Query: 292 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
V L+ATD+AARGLDI + V+NY P YVHR+GRT RAGR G A++ V ++
Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357
Query: 352 RSLLKAIAK 360
LLKAI K
Sbjct: 358 EKLLKAIEK 366
>gi|393760514|ref|ZP_10349324.1| ATP-dependent RNA helicase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
gi|393161371|gb|EJC61435.1| ATP-dependent RNA helicase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
Length = 487
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 155/374 (41%), Positives = 224/374 (59%), Gaps = 8/374 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L+ PLLRA GY+ PTPIQA IP + G D+ +A TG+GKTA F LP L RLL
Sbjct: 10 LGLAEPLLRAVTDAGYTHPTPIQAQAIPKVIEGGDLLAAAQTGTGKTAGFTLPILHRLLN 69
Query: 63 RPK--RIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
P+ R P R LIL PTRELA QV + +Q T +R ++ GG++ Q ALR
Sbjct: 70 NPQQNRKPGRPRALILAPTRELAAQVEESVRLYSQHTRLRSMVMFGGVNINPQFHALRKP 129
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
DI+VATPGR++DH+R +VDL + +L+LDEADR+L++GF +I +++ L P RQT+
Sbjct: 130 LDILVATPGRLLDHVRQR-TVDLTGVEILVLDEADRMLDMGFIRDIRKIISLMPVERQTL 188
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
LFSAT ++++ EL + SL P ++ +T++V+ + ++ +L +
Sbjct: 189 LFSATFSDEIRELARGSLNNPDEVAVAARNTTNELITQQVIL---AEQAHKRDLLSHIIR 245
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
++ ++V++F TK A+RL + A LHGN +QA R AL F+ V L+A
Sbjct: 246 ESSWNQVLVFCRTKHGANRLAEKLSKDGMAAEALHGNKSQAARTRALAGFKNGKVVVLVA 305
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TD+AARGLDI + V+N+ P YVHR+GRT RAG EG A++ V ++ LLK I
Sbjct: 306 TDIAARGLDIDQLPYVVNFELPNVPEDYVHRIGRTGRAGSEGVALSLVDRSEMRLLKQIE 365
Query: 360 KRAGSKLKSRIVAE 373
+ + + RIV E
Sbjct: 366 RMTRNPI-DRIVVE 378
>gi|21464402|gb|AAM52004.1| RE27528p [Drosophila melanogaster]
Length = 507
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 145/366 (39%), Positives = 213/366 (58%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ L +AC+ L + P+ IQ IP+AL G+D+ G A TGSGKT AFALP L LL
Sbjct: 65 DLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALL 124
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A L+LTPTRELA Q+ E + I+CC+VVGG+ Q L P
Sbjct: 125 ENPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 181
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++DHL N +L + L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 182 IIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 241
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSK 240
SAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 242 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGN 301
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T + ++ L A LHG ++Q +RL AL F+ ++ LI+T
Sbjct: 302 SF----MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILIST 357
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+T V+ D L + I
Sbjct: 358 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEH 417
Query: 361 RAGSKL 366
G +L
Sbjct: 418 LLGKQL 423
>gi|295104477|emb|CBL02021.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
SL3/3]
Length = 641
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 151/385 (39%), Positives = 218/385 (56%), Gaps = 14/385 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNLS PLLRA + GY P+PIQAA IP L GRD+ G A TG+GKTAAFALP L+RL
Sbjct: 5 ELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPMLDRLT 64
Query: 62 YR-PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
P+R A+R LILTPTRELA+Q+ E ++ +R ++ GG+ Q AL+
Sbjct: 65 ANAPRRKGAVRALILTPTRELALQIGESFEAYGKYLKLRSTVIFGGVGQAPQVEALKKGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DI++A PGR+ D + +DL L + +LDEADR+L++GF ++ +++ P +RQ ++
Sbjct: 125 DILIACPGRLNDLIGQGF-IDLSALEIFVLDEADRMLDMGFVHDVKKVIAKLPAQRQNLM 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+ ++++L L P + DP S+ + + + E + +LL K
Sbjct: 184 FSATMPAEIEQLAAGILHDPAFVKVDPV----SSTVDRIQQSLYYVEKGNKKLLLPWLIK 239
Query: 241 TFTSKVI---IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
V+ +FS TK A ++ + AA +HGN +Q R+ ALE F+ L
Sbjct: 240 NLQPPVVNALVFSRTKHGADKIAKDLTKQGIPAAAIHGNKSQTARVTALEDFKSGKTRVL 299
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATD+AARG+DI + V NY P +YVHR+GRTARAG +G AV+F ++ L
Sbjct: 300 VATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEQEYLAG 359
Query: 358 IAKRAGSKLKSRIVAEQSITKWSKI 382
I KL R + S W +
Sbjct: 360 I-----EKLNRRKIPVVSGHPWDGV 379
>gi|421486785|ref|ZP_15934320.1| ATP-dependent RNA helicase [Achromobacter piechaudii HLE]
gi|400194954|gb|EJO27955.1| ATP-dependent RNA helicase [Achromobacter piechaudii HLE]
Length = 497
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 151/361 (41%), Positives = 220/361 (60%), Gaps = 12/361 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL++ GY+ PTPIQA IP+ + GRD+ G+A TG+GKTAAF LP L RL+
Sbjct: 21 DFGLHPLLLQSIAETGYTIPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHRLM 80
Query: 62 ------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
P R P +R LILTPTRELA QV+ +++ ++ T +R +V GG+ Q+ A
Sbjct: 81 PLANASASPARHP-VRALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQKEA 139
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR +++VATPGR++DH+ +V+L + +L+LDEADR+L++GF ++ ++RL P +
Sbjct: 140 LRRGCEVLVATPGRLLDHVEQK-NVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPTQ 198
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQ +LFSAT + ++ +L + L P+ + A R +T T +M + A ++
Sbjct: 199 RQGLLFSATFSNEIRKLGRSYLNHPVEIEV---AARNATATTITQIAYKMSGDAKRAAVV 255
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
L +VI+FS TK RL +KA +HG+ TQA R++ALE F+ ++
Sbjct: 256 HLVKSRGLKQVIVFSNTKIGTARLARELERDGVKAESIHGDKTQADRMKALEAFKAGELE 315
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT-FVTDNDRSL 354
L+ATDVAARGLD+ GV VINY P + YVHR+GRT RAG G A+ F D +R L
Sbjct: 316 VLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPDEERFL 375
Query: 355 L 355
L
Sbjct: 376 L 376
>gi|33598065|ref|NP_885708.1| ATP-dependent RNA helicase [Bordetella parapertussis 12822]
gi|33566623|emb|CAE38832.1| putative ATP-dependent RNA helicase [Bordetella parapertussis]
Length = 477
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 151/362 (41%), Positives = 221/362 (61%), Gaps = 14/362 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL++ GY+ PTPIQA IP+ + GRD+ G+A TG+GKTAAF LP L RL+
Sbjct: 21 DFGLHPLLLKSIADTGYTNPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHRLM 80
Query: 62 ------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
P R P +R LILTPTRELA QV+ +++ + T +R +V GG+ Q+ A
Sbjct: 81 PLANTSASPARHP-VRALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQKEA 139
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR +++VATPGR++DH+ +V+L + +L+LDEADR+L++GF ++ ++RL P +
Sbjct: 140 LRRGCEVLVATPGRLLDHVEQK-NVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQ 198
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVL 234
RQ +LFSAT + ++ +L + L P+ + A R +T + V +I +M + A +
Sbjct: 199 RQGLLFSATFSNEIRKLGRSYLNHPVEIEV---AARNAT-ADTVTQIAYQMHGDTKRAAV 254
Query: 235 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 294
+ L +VI+FS TK RL +KA +HG+ TQ R++ALE F+ +
Sbjct: 255 VHLVKSRGLKQVIVFSNTKIGTARLARQLERDGVKAESIHGDKTQGDRMKALEAFKAGDL 314
Query: 295 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT-FVTDNDRS 353
+ L+ATDVAARGLD+ GV VINY P + YVHR+GRT RAG G A+ F D +R
Sbjct: 315 EVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTADEERY 374
Query: 354 LL 355
LL
Sbjct: 375 LL 376
>gi|218889170|ref|YP_002438034.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
gi|218769393|emb|CAW25153.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
Length = 639
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 153/369 (41%), Positives = 214/369 (57%), Gaps = 19/369 (5%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL- 61
L LS L RA EA GYS+PTP+Q IP L GRD+ +A TG+GKT FALP LERL
Sbjct: 6 LGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFP 65
Query: 62 ---------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 112
+ P++ RVL+LTPTRELA QVH + A+ + + GG+ Q
Sbjct: 66 AGHPDREHRHGPRQA---RVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMNPQ 122
Query: 113 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172
AL D++VA PGR++D L VDL + +L+LDEADR+L++GF ++ +++
Sbjct: 123 IQALAKGVDVLVACPGRLLD-LAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKL 181
Query: 173 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMREVNQE 231
P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+ +
Sbjct: 182 PHKRQNLLFSATFSKDIVDLANKLLHNPERIEVTP----PNTTVERIEQRVFRLPAPQKR 237
Query: 232 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 291
A+L L + +V++F+ TK A+RL L AA +HGN +Q R +AL F+
Sbjct: 238 ALLAHLVTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297
Query: 292 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
V L+ATD+AARGLDI + V+NY P YVHR+GRT RAGR G A++ V ++
Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357
Query: 352 RSLLKAIAK 360
LLKAI K
Sbjct: 358 EKLLKAIEK 366
>gi|452977644|gb|EME77410.1| hypothetical protein MYCFIDRAFT_83332 [Pseudocercospora fijiensis
CIRAD86]
Length = 498
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 149/379 (39%), Positives = 218/379 (57%), Gaps = 5/379 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L AC++L + +PT IQ IP+AL G+DI G A TGSGKTAAFALP L+ LL
Sbjct: 78 DLGVREELCDACDSLNFKRPTAIQREAIPIALEGKDIIGLAETGSGKTAAFALPILQALL 137
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + LIL PTRELA Q+ E + +RC ++VGG+ Q AL P
Sbjct: 138 DKPQPLFG---LILAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVPQAVALAKKPH 194
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IVVATPGR++DH+ N+ + L++DEADRLL+L F + ++++ + R+TMLF
Sbjct: 195 IVVATPGRLLDHMENTKGFSVKHFKYLVMDEADRLLDLDFGPILDKILQELNRDRRTMLF 254
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT++ ++ L + +L P+R+S S+ + T+ + R + ++ L+ L +
Sbjct: 255 SATMSTKLNSLTRAALQNPVRVSISESSYQ--TVKNLMQRYMFIPHKYKDIYLVYLLDEF 312
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
IIF+ T R+ + A LHG + Q+ RL AL FR D L+ATD
Sbjct: 313 AGKTCIIFTRTIHETQRIAYVLRALGRSAIPLHGQMNQSARLGALNKFRGGSRDILVATD 372
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V V+N+ P D +YVHRVGRTARAG+ G A++ VT D + + I K
Sbjct: 373 VAARGLDIPSVDLVLNFDLPPDSKTYVHRVGRTARAGKSGVAISIVTQYDIEIYQRIEKA 432
Query: 362 AGSKLKSRIVAEQSITKWS 380
G KL+ + + ++
Sbjct: 433 LGKKLEEHATEREEVMVFA 451
>gi|343493741|ref|ZP_08732041.1| ATP-dependent RNA helicase RhlE [Vibrio nigripulchritudo ATCC
27043]
gi|342825883|gb|EGU60344.1| ATP-dependent RNA helicase RhlE [Vibrio nigripulchritudo ATCC
27043]
Length = 485
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 147/381 (38%), Positives = 225/381 (59%), Gaps = 10/381 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS LLRA E LGY P+PIQA IP + GRD+ +A TG+GKTA F LP L+RL
Sbjct: 6 LGLSPELLRAIEELGYETPSPIQAQAIPPVIQGRDVMAAAQTGTGKTAGFTLPLLQRLAG 65
Query: 63 -RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + +R L+LTPTRELA QV+ + K ++ ++ +V GG+ Q LR D
Sbjct: 66 GKSAKSNHVRALVLTPTRELAAQVNGSVVKYGKYLNVNSNVVFGGVKINPQMMKLRKGSD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++D L +V L VL+LDEADR+L++GF +I +++ L P++RQ +LF
Sbjct: 126 VLVATPGRLLD-LYQQNAVKFSQLEVLVLDEADRMLDMGFIRDIKKILALLPEKRQNLLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++D+ L K + P ++S P T+ + + + + + + ++L L +
Sbjct: 185 SATFSDDIRALAKGLVHNPEQISVSPPNATAKTVEQYLYNVDKKK---KPSILAKLIKEN 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
S+V+IFS TK A+RL + AA +HGN +Q R++ALE F+ V L+ATD
Sbjct: 242 DWSQVLIFSKTKHGANRLSRFLESENVSAAAIHGNKSQGARIKALEHFKTGQVRALVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARGLDI + V+N+ P YVHR+GRT RAG G A + V ++ L AI
Sbjct: 302 IAARGLDIPQLPQVVNFELPHVPEDYVHRIGRTGRAGESGKAYSLVCADEAKELFAI--- 358
Query: 362 AGSKLKSRIVAEQSITKWSKI 382
+L +++ +++ ++ +
Sbjct: 359 --ERLIQKLIPRETVEGYTPV 377
>gi|291230627|ref|XP_002735268.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47-like
[Saccoglossus kowalevskii]
Length = 446
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 160/414 (38%), Positives = 230/414 (55%), Gaps = 24/414 (5%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L L CE L + +PT IQ IPLAL G+D+ G A TGSGKT AFALP L+ LL
Sbjct: 28 LGLVDVLCETCEQLKWKEPTKIQRESIPLALEGKDVIGLAETGSGKTGAFALPILQDLLE 87
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P+R+ A LILTPTRELA Q+ E + I+C +VVGG+ Q L P +
Sbjct: 88 HPQRLFA---LILTPTRELAFQISEQFEALGSAIGIKCAVVVGGIDMMSQALQLAKKPHV 144
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
VVATPGR++DHL N+ +L + L++DEADR+L + F E+ +++++ P+ R+T L+S
Sbjct: 145 VVATPGRLVDHLENTKGFNLRSVKYLVMDEADRILNMDFEIELDKILKVIPRERRTYLYS 204
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSKT 241
AT+T+ V +L + SL P+++ + + L + + I + ++V +L L +
Sbjct: 205 ATMTKKVAKLQRASLKNPVKVEVNTKYQTVEKLLQYYLFIPSKYKDVYLVYILNELAGNS 264
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F ++F T R+ ++ L A LHG ++Q +RL L F+ + LIATD
Sbjct: 265 F----MVFCSTCNNTQRVALMLRNLGLTAVPLHGQMSQNKRLGMLNKFKGKDRSILIATD 320
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V VIN+ P Y+HRVGRTARAG+ G A+TFVT D L + I
Sbjct: 321 VASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGKSGKAITFVTQYDVELYQRI--- 377
Query: 362 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAEN 415
EQ I+K + E+ V ++ ER R A ME T ++
Sbjct: 378 -----------EQLISKQLPLYPSEEEDVMMLV--ERVTEAQRYARMEMTDNDD 418
>gi|451988189|ref|ZP_21936328.1| ATP-dependent RNA helicase RhlE [Pseudomonas aeruginosa 18A]
gi|451754165|emb|CCQ88851.1| ATP-dependent RNA helicase RhlE [Pseudomonas aeruginosa 18A]
Length = 639
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 153/369 (41%), Positives = 214/369 (57%), Gaps = 19/369 (5%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL- 61
L LS L RA EA GYS+PTP+Q IP L GRD+ +A TG+GKT FALP LERL
Sbjct: 6 LGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFP 65
Query: 62 ---------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 112
+ P++ RVL+LTPTRELA QVH + A+ + + GG+ Q
Sbjct: 66 AGHPDREHRHGPRQA---RVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMNPQ 122
Query: 113 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172
AL D++VA PGR++D L VDL + +L+LDEADR+L++GF ++ +++
Sbjct: 123 IQALAKGVDVLVACPGRLLD-LAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKL 181
Query: 173 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMREVNQE 231
P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+ +
Sbjct: 182 PPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTP----PNTTVERIEQRVFRLPAPQKR 237
Query: 232 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 291
A+L L + +V++F+ TK A+RL L AA +HGN +Q R +AL F+
Sbjct: 238 ALLAHLVTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297
Query: 292 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
V L+ATD+AARGLDI + V+NY P YVHR+GRT RAGR G A++ V ++
Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357
Query: 352 RSLLKAIAK 360
LLKAI K
Sbjct: 358 EKLLKAIEK 366
>gi|333378025|ref|ZP_08469758.1| hypothetical protein HMPREF9456_01353 [Dysgonomonas mossii DSM
22836]
gi|332884045|gb|EGK04325.1| hypothetical protein HMPREF9456_01353 [Dysgonomonas mossii DSM
22836]
Length = 374
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 223/369 (60%), Gaps = 8/369 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELN+ P+L+A E GY+ PTPIQ I ALT RDI G A TG+GKTAAF+LP +++L
Sbjct: 5 ELNIIEPILKALEEKGYTTPTPIQEKAIIPALTNRDILGLAQTGTGKTAAFSLPIIQQLY 64
Query: 62 YRP---KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
KR IR LILTPTRELA+Q++ + Q+T +R C++ GG+ K Q L++
Sbjct: 65 LNKVSGKR-REIRALILTPTRELAIQINDSLNDYTQYTGLRHCVIYGGVKQKAQTDELKT 123
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
DI+VATPGR++D L N ++LD + +LDEADR+L++GF +I L+ PK +QT
Sbjct: 124 GIDILVATPGRLLD-LINQGFINLDSIRHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQT 182
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
+ FSAT+ + L + L PL++ P++ T+ + + + + ++ +L++L
Sbjct: 183 LFFSATMPSTIASLSRSILRDPLKVEVTPASSVIDTIKQYLYFVEKQE---KKDLLINLL 239
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
K V++FS TK A ++ L A + + +HGN +Q R AL F+ Q LI
Sbjct: 240 KKDKKQSVLVFSRTKHGADKIARLLCKAGIGSEAIHGNKSQNARQRALTNFKSQKTRVLI 299
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+AARG+D+ ++ VINY P +YVHR+GRT RAG G A+TF + + ++L I
Sbjct: 300 ATDIAARGIDVDQLELVINYDLPDVPETYVHRIGRTGRAGNSGTALTFCSAEENAMLNDI 359
Query: 359 AKRAGSKLK 367
K G KL
Sbjct: 360 QKLTGKKLN 368
>gi|320587284|gb|EFW99764.1| ATP-dependent RNA helicase [Grosmannia clavigera kw1407]
Length = 481
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 158/363 (43%), Positives = 215/363 (59%), Gaps = 21/363 (5%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L L CE LGY+ PTPIQAA IP+AL RDI G+A TGSGKT AFALP L+ LL
Sbjct: 74 ELGLVDALCEVCEMLGYTAPTPIQAAAIPVALKNRDIIGTAETGSGKTIAFALPMLQALL 133
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
RP+ + L+L+PTRELAVQ+ E A + +RC +VVGG+ Q AL P
Sbjct: 134 DRPRPLFG---LVLSPTRELAVQIGQTFESFAAIS-LRCAVVVGGMDMVSQSIALAKKPH 189
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+V T G + HL+ L++DEADRLL++ F + +++R P+ R+TMLF
Sbjct: 190 VV--TKGFSLKHLQ-----------YLVIDEADRLLDMDFGPILEKILRHLPRERRTMLF 236
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT++ V+ L + SL P+R++ SA + STL + V+ R ++ L+ L ++
Sbjct: 237 SATMSSQVESLQRASLRDPVRVNVASSAHQTVSTLKQSVIVTPTTR---KDVCLVYLVNE 293
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+ +++F+ T RL IL A LH L+Q+QRL AL + + LIAT
Sbjct: 294 FYGQSIMVFTRTIYETQRLAILLRALGFGAVPLHARLSQSQRLSALNKIKSGSREMLIAT 353
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLDI + VINY P+D +YVHRVGRTARAG+ G+AV VT D + A+ K
Sbjct: 354 DVAARGLDIPHIGIVINYDVPQDSKTYVHRVGRTARAGKSGHAVNLVTQYDHTHFLAVEK 413
Query: 361 RAG 363
G
Sbjct: 414 AIG 416
>gi|116054159|ref|YP_788602.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
gi|313111948|ref|ZP_07797737.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
aeruginosa 39016]
gi|386068661|ref|YP_005983965.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa NCGM2.S1]
gi|421172149|ref|ZP_15629929.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa CI27]
gi|115589380|gb|ABJ15395.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
aeruginosa UCBPP-PA14]
gi|310884239|gb|EFQ42833.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
aeruginosa 39016]
gi|348037220|dbj|BAK92580.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa NCGM2.S1]
gi|404538376|gb|EKA47919.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa CI27]
Length = 639
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 153/369 (41%), Positives = 214/369 (57%), Gaps = 19/369 (5%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL- 61
L LS L RA EA GYS+PTP+Q IP L GRD+ +A TG+GKT FALP LERL
Sbjct: 6 LGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFP 65
Query: 62 ---------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 112
+ P++ RVL+LTPTRELA QVH + A+ + + GG+ Q
Sbjct: 66 AGHPDREHRHGPRQA---RVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMNPQ 122
Query: 113 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172
AL D++VA PGR++D L VDL + +L+LDEADR+L++GF ++ +++
Sbjct: 123 IQALAKGVDVLVACPGRLLD-LAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKL 181
Query: 173 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMREVNQE 231
P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+ +
Sbjct: 182 PPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTP----PNTTVERIEQRVFRLPAPQKR 237
Query: 232 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 291
A+L L + +V++F+ TK A+RL L AA +HGN +Q R +AL F+
Sbjct: 238 ALLAHLVTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297
Query: 292 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
V L+ATD+AARGLDI + V+NY P YVHR+GRT RAGR G A++ V ++
Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357
Query: 352 RSLLKAIAK 360
LLKAI K
Sbjct: 358 EKLLKAIEK 366
>gi|390351278|ref|XP_786173.3| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Strongylocentrotus purpuratus]
Length = 428
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 145/358 (40%), Positives = 213/358 (59%), Gaps = 6/358 (1%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 68
L AC+ L + P+ IQ +P+AL G+D+ G A TGSGKT AFALP L+ LL P+R+
Sbjct: 10 LCEACDKLKWKTPSKIQTEALPVALQGKDVIGLAETGSGKTGAFALPILQALLETPQRLF 69
Query: 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 128
A L+LTPTRELA Q+ E + + C ++VGG+ Q L P +++ATPG
Sbjct: 70 A---LVLTPTRELAYQIAEQFEALGSTIGVSCVVIVGGIDMMTQALQLAKKPHVMIATPG 126
Query: 129 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 188
R++DHL N+ +L L L++DEADR+L + F AEI +++++ PK+R+T L+SAT+T+
Sbjct: 127 RLVDHLENTKGFNLRGLKYLVMDEADRILNMDFEAEIDKILKVIPKQRRTYLYSATMTKK 186
Query: 189 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVII 248
V +L + SL P+++ + S L + + I ++ L+S+ ++ + ++
Sbjct: 187 VAKLQRASLQDPVKVEVSTKYQTVSKLQQSYIFIPAK---YKDCYLVSILNEFAGNSFMV 243
Query: 249 FSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 308
F T R+ +L L A LHG L+Q++RL L F+ + LIATDVA+RGLD
Sbjct: 244 FCSTCNNTQRVALLLRNLGLTAIPLHGQLSQSKRLGTLNKFKSKSRSILIATDVASRGLD 303
Query: 309 IIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 366
I V VIN+ P Y+HRVGRTARAGR G A+TFVT D L + I + KL
Sbjct: 304 IPHVDCVINFDIPTHSKDYIHRVGRTARAGRAGKAITFVTQYDVELYQRIEQLIDKKL 361
>gi|408419813|ref|YP_006761227.1| ATP-dependent RNA helicase RhlE2 [Desulfobacula toluolica Tol2]
gi|405107026|emb|CCK80523.1| RhlE2: predicted ATP-dependent RNA helicase [Desulfobacula
toluolica Tol2]
Length = 439
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 157/363 (43%), Positives = 222/363 (61%), Gaps = 12/363 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L LL+A ++ GY+ PTPIQ IP L GRDI A TG+GKT AFALP +E +L
Sbjct: 5 ELGLRVELLKASKSKGYTAPTPIQTRAIPAILNGRDILARAQTGTGKTDAFALPLIE-IL 63
Query: 62 YRPK---RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
R K R P R L+LTPTRELA+QV I+ A+ IRC +V GG++ Q L+
Sbjct: 64 SRKKVKRRYP--RALVLTPTRELALQVGESIKAYARRVSIRCTVVYGGVNITPQIDRLKR 121
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
DI+VATPGR++D L + +DL + L+ DEADR+L+LGFS EI E++ P R+T
Sbjct: 122 GIDILVATPGRLLD-LASHRDLDLSRIEFLVFDEADRMLDLGFSEEISEILEFVPTERRT 180
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV-RIRRMREVNQEAVLLSL 237
MLFSAT T+ + L ++ L +P + PS +T E +V ++ + + N+ A+L+ L
Sbjct: 181 MLFSATYTQQIRNLAQIMLQEPDYIEVTPS----NTAAESIVQKVHLVDKPNKRALLIHL 236
Query: 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
+ +++++F TK A++L + AA LHGN +Q+ R L+ F+ + L
Sbjct: 237 ITTGHWTQILVFVRTKHGANKLTEKLVAKGISAAALHGNKSQSFRTRTLKEFKNGVIRTL 296
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATDVAARGLDI + V+NY P Y+HR+GRT RAG G AV+ V+ ++R LKA
Sbjct: 297 VATDVAARGLDISNLPYVVNYDIPSVPEDYIHRIGRTGRAGVSGIAVSLVSPDERPHLKA 356
Query: 358 IAK 360
I K
Sbjct: 357 IEK 359
>gi|380696525|ref|ZP_09861384.1| ATP-dependent RNA helicase [Bacteroides faecis MAJ27]
Length = 374
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 149/369 (40%), Positives = 227/369 (61%), Gaps = 8/369 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELN++ P+L+A E GY+ PTPIQ IP+AL RDI G A TG+GKTA+FA+P ++ L
Sbjct: 5 ELNITEPILKAVEEKGYTVPTPIQEKAIPVALVKRDILGCAQTGTGKTASFAIPIIQHLH 64
Query: 62 YR---PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
KR+ I+ LILTPTRELA+Q+ I+ +++T IR ++ GG++ + Q L
Sbjct: 65 LNKGEGKRL-GIKALILTPTRELALQISECIDDYSKYTRIRHGVIFGGVNQRPQVDMLHK 123
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
DI+VATPGR++D L N + LD++ +LDEADR+L++GF +I ++ PK +QT
Sbjct: 124 GIDILVATPGRLLD-LMNQGHIRLDNIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQT 182
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
+ FSAT+ + + L L P+++ P + ++ + V + + +E +Q +L+S+
Sbjct: 183 LFFSATMPDTIIALTNSLLKNPVKIYVTPKSSTVDSIKQLVYFVEK-KEKSQ--LLISIL 239
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
K+ V+IFS TK A ++ + G A + + +HGN +QA R AL F+ ++
Sbjct: 240 QKSEDRSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMV 299
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+A+RG+DI + VINY P +YVHR+GRT RAG EG A+TF + +R L+ I
Sbjct: 300 ATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNEGTALTFCSQEERKLINDI 359
Query: 359 AKRAGSKLK 367
K G KL
Sbjct: 360 QKLTGKKLN 368
>gi|399072166|ref|ZP_10750181.1| DNA/RNA helicase, superfamily II [Caulobacter sp. AP07]
gi|398042783|gb|EJL35752.1| DNA/RNA helicase, superfamily II [Caulobacter sp. AP07]
Length = 494
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 147/361 (40%), Positives = 214/361 (59%), Gaps = 6/361 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L++PLL+A GY+ PTPIQA IPL ++GRD+ G A TG+GKTAAFALP L RL
Sbjct: 18 DLALAKPLLKALTDKGYTTPTPIQAQAIPLVMSGRDLLGIAQTGTGKTAAFALPILHRLA 77
Query: 62 YRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
K P R L+L+PTRELA Q+ + + + GG+ Q AL +
Sbjct: 78 EDKKPAPRRGFRCLVLSPTRELATQIADSFRDYGKHMGLTVATIFGGVKYGPQMKALAAG 137
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
D+VVATPGR++DHL S L+ + + +LDEAD++L+LGF I ++ PK RQ +
Sbjct: 138 VDVVVATPGRLMDHL-GEKSAHLNGVEIFVLDEADQMLDLGFVVPIRKIASQLPKERQNL 196
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
FSAT+ ++ +L L P +++ PSA + + ++ I R + +L L +
Sbjct: 197 FFSATMPSEIGKLAGELLKNPAQVAITPSATTVERIDQSLIFIEAQR---KRPLLAELLA 253
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+ I+F+ TK+ A R+ + ++AA +HG+ TQ QR AL F+ V LIA
Sbjct: 254 DKSVERSIVFTRTKRGADRVAKYLVASGIEAAAIHGDKTQGQRERALAAFKAGQVKALIA 313
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TD+AARG+D+ V V N+ P SYVHR+GRTAR G+EG A++F D++R+LL+ I
Sbjct: 314 TDIAARGIDVNDVSHVFNFELPNVPESYVHRIGRTARKGKEGVAISFCADDERNLLRDIQ 373
Query: 360 K 360
K
Sbjct: 374 K 374
>gi|24585582|ref|NP_610090.1| CG9253 [Drosophila melanogaster]
gi|7298752|gb|AAF53963.1| CG9253 [Drosophila melanogaster]
gi|384475998|gb|AFH89832.1| FI20110p1 [Drosophila melanogaster]
Length = 507
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 145/366 (39%), Positives = 213/366 (58%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ L +AC+ L + P+ IQ IP+AL G+D+ G A TGSGKT AFALP L LL
Sbjct: 65 DLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALL 124
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A L+LTPTRELA Q+ E + I+CC+VVGG+ Q L P
Sbjct: 125 ENPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 181
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++DHL N +L + L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 182 IIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 241
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSK 240
SAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 242 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGN 301
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T + ++ L A LHG ++Q +RL AL F+ ++ LI+T
Sbjct: 302 SF----MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILIST 357
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+T V+ D L + I
Sbjct: 358 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEH 417
Query: 361 RAGSKL 366
G +L
Sbjct: 418 LLGKQL 423
>gi|223939310|ref|ZP_03631190.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
gi|223892023|gb|EEF58504.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
Length = 412
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 156/385 (40%), Positives = 226/385 (58%), Gaps = 10/385 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
L LS+ ++ +A+GY +PTPIQ IPL L+G+D+ GSA TG+GKTAAFALP L +L
Sbjct: 5 NLGLSQTMVDGVKAMGYVEPTPIQLRAIPLILSGQDVIGSAQTGTGKTAAFALPILSKL- 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P R+LIL PTRELA QV + I A+FT++R ++ GG+ Q AL++ D
Sbjct: 64 --ESHQPRPRLLILEPTRELAAQVETAIRDFARFTNLRAAVLYGGVGYGRQMDALKAGVD 121
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++DHL + D + L+LDEADR+L++GF ++ +V CP+ R T LF
Sbjct: 122 IIIATPGRLLDHLERG-TCKFDQIKYLVLDEADRMLDMGFLPDVRRIVDKCPRDRHTSLF 180
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKR-PSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT+ ++ LIK ++ P + A+R P+ + V I + E + +L L +
Sbjct: 181 SATVPPQIETLIKWAMKNPQTIEI--GARRSPAETVKHV--IYPVAEDQKSDLLRELLER 236
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
VI+F TK A R+ IL A LH N TQ +R +AL+ FR + L+AT
Sbjct: 237 VNYDSVIVFCRTKHRADRIAILLKRNNHAVAVLHSNRTQREREDALKGFRNGRFEVLVAT 296
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARGLDI V VINY P+ Y+HR+GRT RA G A T + D +++I +
Sbjct: 297 DIAARGLDIADVSHVINYDVPQHPEDYIHRIGRTGRAAATGDAFTLMVAEDSQHVQSIER 356
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQ 385
G K++ RI E K++ + E+
Sbjct: 357 FIGKKVE-RIKLENFNYKYTALFEE 380
>gi|86144457|ref|ZP_01062789.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222]
gi|85837356|gb|EAQ55468.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222]
Length = 523
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 140/346 (40%), Positives = 207/346 (59%), Gaps = 5/346 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A EA GY KP+PIQ +P LTG+D+ +A TG+GKTA F LP LE L
Sbjct: 6 LGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILEMLSK 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ R +R L+LTPTRELA QV+ + K + +V GG+ Q LR D
Sbjct: 66 GPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKLRKGSD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++D L N +V D L +L+LDEADR+L++GF +I +++ PK+RQ +LF
Sbjct: 126 VLVATPGRLLD-LYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQNLLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++D+ L K + P+ +S P+ T+ + + + + ++ +L L
Sbjct: 185 SATFSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKA---PMLAKLIKDN 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++FS TK A++L + +A +HGN +Q R +ALE F+ V L+ATD
Sbjct: 242 DWRQVLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 347
+AARG+DI + V+N+ P YVHR+GRT RAG G A++ V
Sbjct: 302 IAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLV 347
>gi|392531372|ref|ZP_10278509.1| ATP-dependent RNA helicase; cold shock [Carnobacterium
maltaromaticum ATCC 35586]
gi|414082690|ref|YP_006991393.1| DEAD/DEAH box helicase [Carnobacterium maltaromaticum LMA28]
gi|412996269|emb|CCO10078.1| DEAD/DEAH box helicase family protein [Carnobacterium
maltaromaticum LMA28]
Length = 541
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 142/357 (39%), Positives = 218/357 (61%), Gaps = 7/357 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L LL++ E LG+ + TPIQ IPLAL G+D+ G A TG+GKTAAF LP L+++
Sbjct: 5 ELGLDPELLQSVERLGFEEATPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPMLQKID 64
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + A++ L++ PTRELA+Q + ++++ +R +V GG Q +L+ P
Sbjct: 65 LKNR---AVQGLVIAPTRELAIQTQEELFRLSRDKKVRVQVVYGGADISRQIRSLKDQPH 121
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IVV TPGR++DH+ N ++ LD + L+LDEAD +L +GF +I ++++ PK RQT+LF
Sbjct: 122 IVVGTPGRLLDHI-NRRTLKLDQVETLVLDEADEMLNMGFLEDIEKIIKEVPKTRQTLLF 180
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ + + + + +P + +A S + + VR + + + LL + +
Sbjct: 181 SATMPDAIKRIGVKFMNEPEHVRIQATAMSDSLIDQYYVRCKDFEKFDIMTRLLDVQTPE 240
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
T I+F TK+ L + +A +HG+L+Q +R+ L+ F+K +D L+ATD
Sbjct: 241 LT---IVFGRTKRRVDELSKGLEMRGYRAEGIHGDLSQQKRMSVLKSFKKGDLDILVATD 297
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
VAARGLDI GV V NY P+D SYVHR+GRT RAG+EG +VTF+T N+ L+ I
Sbjct: 298 VAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMSVTFITPNEMGYLRVI 354
>gi|389685466|ref|ZP_10176790.1| DEAD/DEAH box helicase domain protein [Pseudomonas chlororaphis O6]
gi|388551119|gb|EIM14388.1| DEAD/DEAH box helicase domain protein [Pseudomonas chlororaphis O6]
Length = 445
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 150/373 (40%), Positives = 223/373 (59%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 QFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +PD
Sbjct: 64 GPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKAGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGR+I+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV CP R+QTMLF
Sbjct: 124 ILIGTPGRLIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVDECPNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E++ L P L + ++ T ++++ + ++E ++ L +
Sbjct: 183 SATTGGSGLREMVAKVLNNPEHLQLNAVSQLNDTTRQQIITADHNQ--HKEQIVNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+AT
Sbjct: 241 ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I +
Sbjct: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQHFERRTIKE 373
>gi|422322840|ref|ZP_16403880.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
gi|317402151|gb|EFV82742.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
Length = 481
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 149/361 (41%), Positives = 220/361 (60%), Gaps = 12/361 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL++ GY+ PTPIQA IP+ + GRD+ G+A TG+GKTAAF LP L RL+
Sbjct: 22 DFGLHPLLLQSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHRLM 81
Query: 62 ------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
P R P +R LILTPTRELA QV+ +++ ++ T +R +V GG+ Q+ A
Sbjct: 82 PLANTSASPARHP-VRALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQKEA 140
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR +++VATPGR++DH+ +V+L + +L+LDEADR+L++GF ++ ++RL P +
Sbjct: 141 LRRGCEVLVATPGRLLDHVEQK-NVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQ 199
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQ +LFSAT + ++ +L + L P+ + +T+T+ + M + A ++
Sbjct: 200 RQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATANTITQIAYK---MSGDQKRAAVV 256
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
L +VI+FS TK RL +KA +HG+ TQA R++ALE F+ ++
Sbjct: 257 HLVKSRGLKQVIVFSNTKIGTARLARELERDGVKAESIHGDKTQADRMKALEAFKAGELE 316
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT-FVTDNDRSL 354
L+ATDVAARGLD+ GV VINY P + YVHR+GRT RAG G A+ F D +R L
Sbjct: 317 VLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGATGEAIALFTADEERFL 376
Query: 355 L 355
L
Sbjct: 377 L 377
>gi|402771172|ref|YP_006590709.1| DEAD/DEAH box helicase [Methylocystis sp. SC2]
gi|401773192|emb|CCJ06058.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. SC2]
Length = 442
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 157/362 (43%), Positives = 217/362 (59%), Gaps = 8/362 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ LLRA E GY+ PTP+QA IP L GRD+ G A TG+GKTAAFALP L RLL
Sbjct: 5 DLGLNEILLRALEREGYTTPTPVQAQSIPALLQGRDLLGVAQTGTGKTAAFALPILHRLL 64
Query: 62 YRPKRIPA---IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
KR PA R LIL PTRELA Q+ F ++VGG+S + Q L
Sbjct: 65 AD-KRRPAPNTARALILAPTRELAAQIADSFRSYGHFFRPSVGVIVGGVSHRPQNEMLAR 123
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
D++VATPGR++DHL S + L VL+LDEAD +L+LGF I ++V PK+RQT
Sbjct: 124 GLDVLVATPGRLLDHL-GSGRLRLATTEVLVLDEADHMLDLGFIVPIRQIVAKLPKQRQT 182
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
+LFSAT+ ++ L L P ++S P+A + + V + + + +L+ L
Sbjct: 183 LLFSATMPREISALADDMLRDPAKVSVTPAATTAERVAQHVYLVSGGAKRD---LLVELL 239
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+ S+ I+F+ TK+ A R+ A + A +HGN +Q+QRL AL+ FRK L+
Sbjct: 240 NDREISRAIVFTRTKRGADRVAQHLESAGVGADAIHGNKSQSQRLRALDGFRKGRTRVLV 299
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+AARG+D+ GV V+N+ P +YVHR+GRTARAG G A++ + +R LL+AI
Sbjct: 300 ATDIAARGIDVDGVTHVVNFELPEVAEAYVHRIGRTARAGATGQAISLCDNGERPLLRAI 359
Query: 359 AK 360
K
Sbjct: 360 EK 361
>gi|330808146|ref|YP_004352608.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|423695930|ref|ZP_17670420.1| DEAD/DEAH box helicase domain protein [Pseudomonas fluorescens
Q8r1-96]
gi|327376254|gb|AEA67604.1| putative ATP-dependent RNA helicase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|388009311|gb|EIK70562.1| DEAD/DEAH box helicase domain protein [Pseudomonas fluorescens
Q8r1-96]
Length = 448
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 152/373 (40%), Positives = 223/373 (59%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 QFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +PD
Sbjct: 64 GPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTMLF
Sbjct: 124 ILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECTNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E+I L P L + ++ ST ++++ + ++E ++ L +
Sbjct: 183 SATTGGSGLREMIAKVLNNPEHLQLNAVSQLNSTTRQQIITADHNQ--HKEQIVNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+AT
Sbjct: 241 ETYEKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I +
Sbjct: 301 DVAARGLDVEGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQSFERRTIKE 373
>gi|238028205|ref|YP_002912436.1| ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
gi|237877399|gb|ACR29732.1| Putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
Length = 480
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 149/365 (40%), Positives = 225/365 (61%), Gaps = 11/365 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L+ +L+A GY+KPTPIQA IP+ L+GRD+ G+A TG+GKTA+F+LP ++RLL
Sbjct: 15 QFGLAPDILKAIADQGYTKPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLL 74
Query: 62 YR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
+ P R P +R LILTPTRELA QV + + A+ T +R +V GG+ Q
Sbjct: 75 PQANTSASPARHP-VRALILTPTRELADQVAANVHSYAKHTALRSAVVFGGVDMNPQMAE 133
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR +I++ATPGR++DH++ + +L + +L+LDEADR+L++GF ++ ++ L PK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQK-TANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKA 192
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQT+LFSAT + ++ +L LT P + S + +T+ V I E +++A ++
Sbjct: 193 RQTLLFSATFSPEIKKLAATYLTNPQTIEVARSNATATNVTQIVYDIA---EGDKQAAVV 249
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
L +VI+F +K A RL L + A +HG+ +Q +R++ALE F++ V+
Sbjct: 250 KLIRDRALKQVIVFCNSKIGASRLARLLERDGVVATAIHGDRSQNERMQALEAFKRGEVE 309
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARGLDI + VIN+ P YVHR+GRT RAG G A++ + N+R L
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369
Query: 356 KAIAK 360
I K
Sbjct: 370 ADIEK 374
>gi|340786226|ref|YP_004751691.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
gi|340551493|gb|AEK60868.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
Length = 506
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 166/477 (34%), Positives = 249/477 (52%), Gaps = 43/477 (9%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ LS +LRA GY PTPIQA IP+ L GRD+ G+A TG+GKTA F+LP ++ LL
Sbjct: 32 DFGLSPDILRALNDQGYVHPTPIQAEAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQLLL 91
Query: 62 YR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
P R P +R LILTPTRELA QV ++ + T +R +V GG+ Q A
Sbjct: 92 AHANTSASPARHP-VRALILTPTRELADQVAENVKAYCRHTPLRSTVVFGGVDIAPQTAA 150
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LRS +IV+ATPGR++DH++ +++L +L++DEADR+L++GF ++ ++ L PK
Sbjct: 151 LRSGIEIVIATPGRLLDHVQQK-TLNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKE 209
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQ ++FSAT + ++ +L L P+ + S +T+ + + + EAV
Sbjct: 210 RQNLMFSATFSGEIKKLAATFLKNPVTIEVARSNATADNVTQTMYHVNE--QTKAEAVSY 267
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
+ + +VI+FS TK A +L + A+ +HG+ TQ +R+ ALE F++ ++
Sbjct: 268 IIRERNL-KQVIVFSNTKIGASKLARHLENEGVNASAIHGDKTQNERMAALEAFKRGEIE 326
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARGLDI + VIN+ P + YVHR+GRT RAG G A++ D D LL
Sbjct: 327 VLVATDVAARGLDIAELPCVINFDLPYNAEDYVHRIGRTGRAGASGDAISLYADKDERLL 386
Query: 356 KAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKA--------- 406
I K + K+ + ++ VA ERE R A
Sbjct: 387 VDIEK---------------MIKYKFVRAELTGFVAKPASAERERSSGRGADARNGRGER 431
Query: 407 -EMEATKAENMIAHKEEIFARPKRT-------WFVTEKEKKLAVKADKASIEKGKGS 455
E A ++ H + + WF+ E LA + D +S+ GS
Sbjct: 432 GEGRAPASDRSTQHTRSAYTSTPTSRKEKVDPWFLKPYEPTLAAEVDTSSVAPAGGS 488
>gi|254561714|ref|YP_003068809.1| RNA helicase [Methylobacterium extorquens DM4]
gi|254268992|emb|CAX24953.1| RNA helicase [Methylobacterium extorquens DM4]
Length = 510
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 146/359 (40%), Positives = 219/359 (61%), Gaps = 6/359 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L++P+LRA E GY PTPIQA +P A+ GRD+CG A TG+GKTAAFALP L RL
Sbjct: 6 DFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHRLS 65
Query: 62 YRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
+R P RVL+L+PTRELA Q+ + +V GG++ QE A+
Sbjct: 66 LDSRRAPRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQERAIAPG 125
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
DI+VATPGR+ID L + ++ L+ + +L+LDEAD++L+LGF + +V++ P +RQ++
Sbjct: 126 VDILVATPGRLID-LVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAKRQSL 184
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
FSAT+ +++ L L+ P++++ P A + ++V+ ++A+L +
Sbjct: 185 FFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFCH---TGAKQALLNHVLR 241
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+V++F+ TK A R+ A + +A +HGN +Q QR AL FR L+A
Sbjct: 242 DPKIERVLVFTRTKHGADRVVRGLDKANVVSAAIHGNKSQPQRERALAAFRDGSCRVLVA 301
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
TD+AARG+D+ GV V+NY P SYVHR+GRTARAG EG A++F D +R+ L+ I
Sbjct: 302 TDIAARGIDVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRDI 360
>gi|152988184|ref|YP_001345923.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
gi|150963342|gb|ABR85367.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
Length = 635
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 153/369 (41%), Positives = 214/369 (57%), Gaps = 19/369 (5%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL- 61
L LS L RA EA GYS+PTP+Q IP L GRD+ +A TG+GKT FALP LERL
Sbjct: 6 LGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFP 65
Query: 62 ---------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 112
+ P++ RVL+LTPTRELA QVH + A+ + + GG+ Q
Sbjct: 66 AGHPDREHRHGPRQA---RVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMNPQ 122
Query: 113 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172
AL D++VA PGR++D L VDL + +L+LDEADR+L++GF ++ +++
Sbjct: 123 IQALAKGVDVLVACPGRLLD-LAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKL 181
Query: 173 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMREVNQE 231
P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+ +
Sbjct: 182 PPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTP----PNTTVERIEQRVFRLPAPQKR 237
Query: 232 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 291
A+L L + +V++F+ TK A+RL L AA +HGN +Q R +AL F+
Sbjct: 238 ALLAHLVTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297
Query: 292 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
V L+ATD+AARGLDI + V+NY P YVHR+GRT RAGR G A++ V ++
Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357
Query: 352 RSLLKAIAK 360
LLKAI K
Sbjct: 358 EKLLKAIEK 366
>gi|160880140|ref|YP_001559108.1| DEAD/DEAH box helicase [Clostridium phytofermentans ISDg]
gi|160428806|gb|ABX42369.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
ISDg]
Length = 514
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 155/434 (35%), Positives = 243/434 (55%), Gaps = 27/434 (6%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E+NL +PLL+A + G+ +P+PIQ IPL L GRDI G A TG+GKTAAFALP L+ L
Sbjct: 5 EMNLIKPLLQAIKEEGFIEPSPIQKKTIPLVLEGRDILGCAQTGTGKTAAFALPILQSL- 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+R LI+TPTRELA+Q++ E ++T ++ ++ GG+ +Q +L++ D
Sbjct: 64 -SKGEGSGVRALIITPTRELAIQIYESFECFGKYTSLKQSVIYGGVGQSLQVNSLKAGID 122
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR+ D L + LD + + +LDEAD++L++GF +I ++++L PK RQT+LF
Sbjct: 123 ILIATPGRLND-LIGQGYITLDAIEMFVLDEADQMLDMGFLNDIKKVIKLLPKTRQTLLF 181
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ ++++ L L P + P ++ + V + R+ N+ ++L SL +
Sbjct: 182 SATMPKEIESLATNLLNNPEIIKISPVTSTVDSIEQSVYFVDRL---NKISLLTSLIKEH 238
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
S+V++F+ TK A R+ A +K +HG Q R AL F++ + L+ATD
Sbjct: 239 KMSRVLVFTKTKHGADRVADKLNKAKVKTQAIHGGKGQNARQTALSDFKEGKIKVLVATD 298
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARG+DI + V+NY P Y+HR+GRT RAG G A+ +D L+ I K
Sbjct: 299 IAARGIDISELSYVVNYDIPNQAEIYIHRIGRTGRAGLGGNAINLCNIDDMDYLREIEKH 358
Query: 362 AGSKLKSRIVAEQSITKWSK-IIEQMEDQVAAILQEEREERILRKAEMEATKAENMI--- 417
G +V + +KW I+E+ E V +R E + E+ K E I
Sbjct: 359 IG------MVIPEVPSKWPMLILEKTEKPVRG----QRPENTTKNVGKESVKTEEKILLN 408
Query: 418 -------AHKEEIF 424
AHK+ ++
Sbjct: 409 EGAKKTKAHKKPVY 422
>gi|157376983|ref|YP_001475583.1| DEAD/DEAH box helicase [Shewanella sediminis HAW-EB3]
gi|157319357|gb|ABV38455.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 513
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 145/358 (40%), Positives = 218/358 (60%), Gaps = 7/358 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE LL
Sbjct: 28 LGLSAPILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE-LLT 86
Query: 63 RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
R R A +R L+LTPTRELA QV +E + +R +V GG+ Q + L
Sbjct: 87 RGNRAQAKQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVVFGGVGIGPQISKLGKGV 146
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DI+VATPGR++D L N +++ + L VLILDEADR+L++GF +I +++++ P +RQ ++
Sbjct: 147 DILVATPGRLLD-LFNQRALNFNQLEVLILDEADRMLDMGFIHDIKKILKVLPAKRQNLM 205
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++D+ +L K + P+ +S P T+ + + ++ + ++ A L+ L +
Sbjct: 206 FSATFSDDIRKLAKGLVNNPVEISVTPRNATAKTVEQYIYQVDQKQKT---AALIHLIKQ 262
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++FS TK A+R+ L AA +HGN +Q R +AL F+ V L+AT
Sbjct: 263 NDWKQVLVFSRTKHGANRIAKNLEANDLTAAAIHGNKSQGARTKALANFKSGEVRVLVAT 322
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
D+AARG+DI + V+N+ P YVHR+GRT RAG +G AV+ V+ ++ LL+ I
Sbjct: 323 DIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGADGQAVSLVSGDESKLLRDI 380
>gi|344940973|ref|ZP_08780261.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
gi|344262165|gb|EGW22436.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
Length = 419
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 153/370 (41%), Positives = 219/370 (59%), Gaps = 11/370 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL-- 60
L LS PLLRA GY+ P+PIQ+ IP L G D+ +A TG+GKTA F LP L RL
Sbjct: 6 LGLSDPLLRAIADAGYTTPSPIQSQAIPAVLGGHDVLAAAQTGTGKTAGFTLPILHRLSQ 65
Query: 61 -LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD--IRCCLVVGGLSTKMQETALR 117
Y R +RVLILTPTRELA Q+ + K ++ +V GG+ Q LR
Sbjct: 66 KAYGNNR--PVRVLILTPTRELAAQIGESVNKYGAHLHPRLKSEVVFGGVKINPQMMRLR 123
Query: 118 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 177
DI+VATPGR++D L N +V LD + LILDEADR+L++GF +I +++ PK+RQ
Sbjct: 124 GGVDILVATPGRLLD-LVNQNAVKLDQVETLILDEADRMLDMGFIRDIRKIIAFLPKKRQ 182
Query: 178 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 237
+LFSAT +ED+ +L L P+++ P + L E+V + + + N+ +L L
Sbjct: 183 NLLFSATFSEDIRKLTTGLLVNPIKIEVAPR-NTAAELVEQVAYL--VNKANKTELLCHL 239
Query: 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
+ +V++F+ TK A+RL +KAA +HGN +Q R AL F+ + L
Sbjct: 240 IKEHDWQQVLVFTTTKHGANRLTEKLNKVDIKAAAIHGNKSQGARTSALSGFKAGEIRVL 299
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATDVAARG+DI + V+N+ PR YVHR+GRT RAG EG A++ V+ ++ S L+
Sbjct: 300 VATDVAARGIDINLLPHVVNFELPRAPEDYVHRIGRTGRAGEEGQAISLVSHDEYSFLRL 359
Query: 358 IAKRAGSKLK 367
+ K G ++K
Sbjct: 360 VEKLIGKEIK 369
>gi|410093986|ref|ZP_11290448.1| ATP-dependent RNA helicase SrmB [Pseudomonas viridiflava UASWS0038]
gi|409758627|gb|EKN43906.1| ATP-dependent RNA helicase SrmB [Pseudomonas viridiflava UASWS0038]
Length = 445
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 161/376 (42%), Positives = 222/376 (59%), Gaps = 10/376 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 EFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K IR +IL PTRELA Q +E+ +QFT ++ LV GG K Q LR +PD
Sbjct: 64 GPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLVTGGEDFKAQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGR+++ L N+ ++DL + VL+LDEADR+L++GFS ++ L C R QTMLF
Sbjct: 124 ILIGTPGRLLEQL-NAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E+I L P L + ++ S ++V V++E VL L +
Sbjct: 183 SATTGGAGLREMIGKVLKDPQHLQLNNVSELASGTRHQIVMAD--HNVHKEQVLNWLLTN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFG-LAAL--KAAELHGNLTQAQRLEALELFRKQHVDFL 297
K IIF+ TK A R L+G L AL KA LHG+ Q R A++ ++ +
Sbjct: 241 ETYQKAIIFTNTKAMADR---LYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKVM 297
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATDVAARGLD+ G+ VIN+ PR YVHRVGRT RAG EG A++ + D +L+ +
Sbjct: 298 VATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSEGLAISLICHGDWNLMSS 357
Query: 358 IAKRAGSKLKSRIVAE 373
I + + R++ E
Sbjct: 358 IERYLKQSFERRVIKE 373
>gi|329906289|ref|ZP_08274385.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
gi|327547309|gb|EGF32148.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
Length = 504
Score = 271 bits (694), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 149/371 (40%), Positives = 221/371 (59%), Gaps = 10/371 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ LS +LRA GY PTPIQAA IP+ L GRD+ G+A TG+GKTA F+LP ++ LL
Sbjct: 20 DFGLSAEILRALADQGYDHPTPIQAAAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQLLL 79
Query: 62 YR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
P R P +R LILTPTRELA QV ++ + T +R +V GG+ Q A
Sbjct: 80 ANASNSASPARHP-VRALILTPTRELADQVAENVKAYCRHTPLRSTVVFGGMDMAPQTAA 138
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR+ +IV+ATPGR++DH++ +++L +L++DEADR+L++GF ++ ++ L PK+
Sbjct: 139 LRAGVEIVIATPGRLLDHVQQK-TLNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKK 197
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQ ++FSAT + ++ +L L P+ + S + +T+ V ++ + + ++
Sbjct: 198 RQNLMFSATFSGEIKKLASSFLDNPVTIEVARSNQTADRVTQVVYKVDS--DDAKRDIVA 255
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
L +V++FS TK A RL +KA+ +HG+ TQ++R+ ALE F+ +D
Sbjct: 256 HLIRGRQLKQVLVFSNTKIGASRLARELEKGGVKASAIHGDKTQSERMAALEAFKGGEID 315
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARGLDI + VINY P + YVHR+GRT RAG G A++ T D LL
Sbjct: 316 VLVATDVAARGLDISDLPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFTTKDERLL 375
Query: 356 KAIAKRAGSKL 366
I K K
Sbjct: 376 LDIEKLINHKF 386
>gi|403347814|gb|EJY73340.1| hypothetical protein OXYTRI_05530 [Oxytricha trifallax]
Length = 508
Score = 271 bits (694), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 152/365 (41%), Positives = 208/365 (56%), Gaps = 6/365 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + L A + +GY PT IQA + L G+DI G A TGSGKTAAFA+P +++LL
Sbjct: 63 KLGVCSELQEALKNMGYKCPTKIQAESLQYTLKGKDIIGLAETGSGKTAAFAIPVIQQLL 122
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ A +++PTREL VQ+ E I +R ++VGGL Q AL P
Sbjct: 123 DNPQPFFAC---VMSPTRELCVQIAEQFEAIGAGIGLRTAVLVGGLDMVSQAIALSKNPH 179
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+V+ TPGRM DHL N+ L L LI DEADRLL + F +I+ ++ PK R T LF
Sbjct: 180 VVIGTPGRMADHLANTKGFHLKKLKFLIFDEADRLLSMDFEKQINLILTQIPKSRNTYLF 239
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T V +L + SL P+++ K TL + + I E ++E L+ L ++
Sbjct: 240 SATMTSKVQKLQRASLNDPVKIEVSSKYKTVDTLVQNYIFI---PEKHKETYLVYLLTQF 296
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
K+IIF+ T + +L ++ KA ++G LTQ QRL AL F+ + LIATD
Sbjct: 297 AGQKMIIFTTTCNQSMKLALILRNLNFKAVNINGQLTQTQRLSALNKFKANERNILIATD 356
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V VIN+ P+ YVHRVGRTARAG+ G A+TFVT D + I +
Sbjct: 357 VASRGLDIPEVDFVINFDIPQHSKDYVHRVGRTARAGKTGKAITFVTQYDVETFQKIEQL 416
Query: 362 AGSKL 366
KL
Sbjct: 417 IDKKL 421
>gi|218676102|ref|YP_002394921.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
gi|218324370|emb|CAV25741.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
Length = 523
Score = 271 bits (694), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 140/346 (40%), Positives = 207/346 (59%), Gaps = 5/346 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A EA GY KP+PIQ +P LTG+D+ +A TG+GKTA F LP LE L
Sbjct: 6 LGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILEMLSK 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ R +R L+LTPTRELA QV+ + K + +V GG+ Q LR D
Sbjct: 66 GPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKLRKGSD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++D L N +V D L +L+LDEADR+L++GF +I +++ PK+RQ +LF
Sbjct: 126 VLVATPGRLLD-LYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQNLLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++D+ L K + P+ +S P+ T+ + + + + ++ +L L
Sbjct: 185 SATFSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKA---PMLAKLIKDN 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++FS TK A++L + +A +HGN +Q R +ALE F+ V L+ATD
Sbjct: 242 DWRQVLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 347
+AARG+DI + V+N+ P YVHR+GRT RAG G A++ V
Sbjct: 302 IAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLV 347
>gi|82703770|ref|YP_413336.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC
25196]
gi|82411835|gb|ABB75944.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC
25196]
Length = 510
Score = 271 bits (694), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 158/378 (41%), Positives = 233/378 (61%), Gaps = 15/378 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNL+ +LRA GY+ PTPIQ IP L GRDI G+A TG+GKTA+F LP L L
Sbjct: 5 ELNLTPEILRAIADQGYTDPTPIQTQAIPHILEGRDIMGAAQTGTGKTASFTLPMLNLLQ 64
Query: 62 Y------RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
P R P IR LIL PTRELA+QVH ++ ++ +R V GG+ + Q
Sbjct: 65 SGANTSASPARHP-IRTLILVPTRELAIQVHESVKTYGKYLPLRYAAVYGGVDMEPQTRE 123
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR+ +I+VATPGR++DH++ +++L + +LILDEADR+L++GF +I ++ L P +
Sbjct: 124 LRAGVEILVATPGRLLDHVQQK-AINLSKVEILILDEADRMLDMGFLPDIKRILALLPSQ 182
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR--MREVNQEAV 233
RQ+++FSAT ++++ +L L +P+ + A+R +T+TE + + +RE +E +
Sbjct: 183 RQSLMFSATFSDEIKKLAGKLLREPVLVEV---ARR-NTITELITHVVHPVVRERKRE-L 237
Query: 234 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 293
L L +V++F+ TK A RL + A +HG+ TQ QR EAL F++
Sbjct: 238 LAHLIKSQDLQQVLVFARTKHGASRLAHQLERDHISATAIHGDKTQTQRTEALAKFKQGV 297
Query: 294 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 353
V L+ATDVAARGLDI + V+N+ P + YVHR+GRT RAG +G AV+ V +++
Sbjct: 298 VRVLVATDVAARGLDIEELPHVVNFELPTNPEDYVHRIGRTGRAGTKGDAVSLVCEDEAE 357
Query: 354 LLKAIAKRAGSKLKSRIV 371
LLK I K KL+S++V
Sbjct: 358 LLKGIEKLLKFKLESKVV 375
>gi|187479233|ref|YP_787258.1| ATP-dependent RNA helicase [Bordetella avium 197N]
gi|115423820|emb|CAJ50371.1| putative ATP-dependent RNA helicase [Bordetella avium 197N]
Length = 477
Score = 271 bits (694), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 151/362 (41%), Positives = 223/362 (61%), Gaps = 14/362 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL++ GY+ PTPIQA IP+ GRD+ G+A TG+GKTAAF LP L RL+
Sbjct: 19 DFGLHPLLLKSIAETGYTSPTPIQAQAIPVVAEGRDVMGAAQTGTGKTAAFTLPILHRLM 78
Query: 62 ------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
P R P +R LILTPTRELA QV+ +++ + T +R +V GG+ Q+ A
Sbjct: 79 PLANSSASPARHP-VRALILTPTRELADQVYENVKRYSLHTPLRSAVVFGGVDIGPQKEA 137
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR +++VATPGR++DH+ +V+L + +L+LDEADR+L++GF ++ ++RL P +
Sbjct: 138 LRQGCEVLVATPGRLLDHVEQK-NVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPPQ 196
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVL 234
RQ +LFSAT + ++ +L + L +P+ + A R +T + V +I +M + A +
Sbjct: 197 RQGLLFSATFSNEIRKLGRSYLNQPVEIEV---AARNAT-ADTVTQIAYQMTGEAKRAAV 252
Query: 235 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 294
+ L +VI+FS TK RL L +KA +HG+ +QA R++ALE F+ +
Sbjct: 253 VHLVKSRGLKQVIVFSNTKIGTARLARQLELDGVKAESIHGDKSQADRMKALEAFKAGEL 312
Query: 295 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT-FVTDNDRS 353
+ L+ATDVAARGLD+ GV VINY P + YVHR+GRT RAG G A+ F + +R
Sbjct: 313 EVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPEEERY 372
Query: 354 LL 355
LL
Sbjct: 373 LL 374
>gi|118497423|ref|YP_898473.1| ATP-dependent RNA helicase [Francisella novicida U112]
gi|195536115|ref|ZP_03079122.1| dead/deah box helicase domain protein [Francisella novicida FTE]
gi|118423329|gb|ABK89719.1| ATP-dependent RNA helicase [Francisella novicida U112]
gi|194372592|gb|EDX27303.1| dead/deah box helicase domain protein [Francisella tularensis
subsp. novicida FTE]
Length = 441
Score = 271 bits (694), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 144/366 (39%), Positives = 220/366 (60%), Gaps = 5/366 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L+L+ + A E GY+KPTPIQA IP+ L G D+ SA TG+GKTA F LP ++RLL
Sbjct: 5 DLDLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQRLL 64
Query: 62 YRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+PK + I+ LILTPTRELA Q+ I+ A T IR ++ GG+S Q LR
Sbjct: 65 DQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRKGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
+I++ATPGR++D L + +V D L +LDEADR+L++GF ++ ++ +L PK+ QT++
Sbjct: 125 EILIATPGRLLD-LYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQTLM 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT + ++ L L P +SAD +T+++ + + ++N L+SL
Sbjct: 184 FSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKIN---ALISLIKD 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++FS TK A+++ A + ++ +HGN +Q R +AL F+ ++ L+AT
Sbjct: 241 QNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARG+DI + VIN P YVHR+GRT RAG+EG A++ V+ ++ L I
Sbjct: 301 DIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNIEH 360
Query: 361 RAGSKL 366
G L
Sbjct: 361 LIGHLL 366
>gi|315126209|ref|YP_004068212.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
gi|315014723|gb|ADT68061.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
Length = 465
Score = 271 bits (694), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 150/362 (41%), Positives = 215/362 (59%), Gaps = 5/362 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS+ L+ A GY PTPIQA IP + RD+ +A TG+GKTA F LP +ERL
Sbjct: 6 LGLSQSLVNAVLEKGYETPTPIQAQAIPAIIARRDVMAAAQTGTGKTAGFTLPLIERLSS 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K + +R LILTPTRELA+QV +E+ A+ +D+ +V GG+ Q LR D
Sbjct: 66 GTKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRLRKGVD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR+ID L N +V D + VL+LDEADR+L++GF +I L+ P++RQ ++F
Sbjct: 126 ILVATPGRLID-LHNQNAVKFDSIEVLVLDEADRMLDMGFIHDIKRLIAKMPEKRQNLMF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++D+ L K + P+ +S ++T+ V + + R+ A+L L
Sbjct: 185 SATFSDDIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKARKT---ALLSHLIRSN 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++FS TK A+RL + A +HGN +Q R++ALE F+ V L+ATD
Sbjct: 242 NWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALEGFKSGEVRVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+ ARGLDI+ + V+NY P YVHR+GRT RAG G+A++FVT +D L I +
Sbjct: 302 IVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTVDDAVDLYGIERF 361
Query: 362 AG 363
G
Sbjct: 362 IG 363
>gi|398914196|ref|ZP_10656834.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM49]
gi|398951208|ref|ZP_10673906.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM33]
gi|426410872|ref|YP_007030971.1| ATP-dependent RNA helicase [Pseudomonas sp. UW4]
gi|398156990|gb|EJM45400.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM33]
gi|398178936|gb|EJM66566.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM49]
gi|426269089|gb|AFY21166.1| ATP-dependent RNA helicase [Pseudomonas sp. UW4]
Length = 446
Score = 271 bits (694), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 151/373 (40%), Positives = 222/373 (59%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 QFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +PD
Sbjct: 64 GPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTMLF
Sbjct: 124 ILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECTNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E+I L P L + ++ T ++++ + ++E ++ L +
Sbjct: 183 SATTGGSGLREMIAKVLNNPEHLQLNAVSQLNDTTRQQIITADHNQ--HKEQIVNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+AT
Sbjct: 241 ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I +
Sbjct: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQSFERRTIKE 373
>gi|253573302|ref|ZP_04850645.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
oral taxon 786 str. D14]
gi|251846830|gb|EES74835.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 518
Score = 271 bits (694), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 150/389 (38%), Positives = 222/389 (57%), Gaps = 21/389 (5%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L +L+A LG+ + TPIQA IP+AL+GRD+ G A TG+GKTAAF LP + ++
Sbjct: 6 DFGLEPKVLQAITELGFEEATPIQAKSIPIALSGRDLIGQAQTGTGKTAAFGLPLINKI- 64
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
PK I L++TPTRELA+QV I K+++F R + GG Q AL+ P
Sbjct: 65 --PKEEDRIVALVMTPTRELAIQVAEEIGKLSRFKGTRSLPIYGGQDIVRQIRALKKKPQ 122
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGR++DH+ N ++ LDD+ ++LDEAD +L++GF +I +++L P+ RQTMLF
Sbjct: 123 IIIGTPGRLLDHI-NRKTIKLDDVKTVVLDEADEMLDMGFMDDIQSILKLVPEDRQTMLF 181
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ ++ +L + L P +S P + + + + ++ + LL + S
Sbjct: 182 SATMPANIQKLAQQFLKNPEHVSVIPKQVSAPLIDQAYIEVHERQKFDALTRLLDMESPE 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
I+F TK+ L A LHG+L+Q QR + FR +D L+ATD
Sbjct: 242 LA---IVFGRTKRRVDELSEALQKQGYSADGLHGDLSQNQRDNVMRKFRDGSIDVLVATD 298
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLD+ GV V+N+ P+D SYVHR+GRT RAG+EG A +FVT + L+ I +
Sbjct: 299 VAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGVAWSFVTPREMDHLRFIERI 358
Query: 362 AGSKL--------------KSRIVAEQSI 376
K+ K RI+AE+ I
Sbjct: 359 TRHKIARKPLPSIAEAIEGKQRIIAERLI 387
>gi|156093649|ref|XP_001612863.1| DEAD/DEAH box helicase [Plasmodium vivax Sal-1]
gi|148801737|gb|EDL43136.1| DEAD/DEAH box helicase, putative [Plasmodium vivax]
Length = 539
Score = 271 bits (694), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 160/418 (38%), Positives = 231/418 (55%), Gaps = 28/418 (6%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELN+ +L++ E LG+ KPT IQ +P A RDI G + TGSGKTA F +P L+ L
Sbjct: 136 ELNICEEILQSIEELGWKKPTAIQRKMLPFAFQKRDIIGLSETGSGKTACFIIPILQEL- 194
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
R KR + L+++PTREL +Q+ + + I C + GG+ Q L P+
Sbjct: 195 -REKR-QSFFALVISPTRELCIQIAQHFQALGSNLLINICTIFGGVDIVTQSLNLAKKPN 252
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+V+TPGR++DHL N+ +L +L L+ DEAD+LL L F A I++L+ + P++R T LF
Sbjct: 253 IIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSLDFEASINKLLLILPEKRITFLF 312
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ V +L K SL P+ + STL E + I + L SLC
Sbjct: 313 SATMTKSVAKLKKASLKNPITVEVSSKYSTASTLIENYIFIPLKYKY---TYLCSLCFHF 369
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ +IIF+ T A ++ LK+ LHG LTQ QRL +L F+ + + LI+T
Sbjct: 370 SSRSIIIFANTCATAQKINFFCRNLGLKSICLHGKLTQNQRLSSLNSFKSKRYNILISTQ 429
Query: 302 VAARGLDIIGVQTVINYACPRDLTS---YVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
V ARGLD+ ++ VIN+ DL S Y+HRVGRTARAGR G ++TFVT D AI
Sbjct: 430 VGARGLDLKDIRIVINF----DLCSCKEYIHRVGRTARAGRTGKSITFVTQYDVESFLAI 485
Query: 359 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENM 416
K K I K+S++ D+ A+L E+ LR A+ E + +++
Sbjct: 486 EKMLNKK----------IDKFSEL-----DENDALLYHEQTVEALRLADTEMKENQDL 528
>gi|162447374|ref|YP_001620506.1| ATP-dependent RNA helicase, DEAD box containing [Acholeplasma
laidlawii PG-8A]
gi|161985481|gb|ABX81130.1| ATP-dependent RNA helicase, superfamily II [Acholeplasma laidlawii
PG-8A]
Length = 448
Score = 271 bits (693), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 147/371 (39%), Positives = 229/371 (61%), Gaps = 10/371 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELN+ + +A GY PT IQ IP+ L+G+D+ GSA TG+GKTAAFA+P L+++
Sbjct: 5 ELNIIERIQKALTLSGYEAPTAIQEQAIPILLSGQDLLGSAQTGTGKTAAFAIPILQKI- 63
Query: 62 YRPKRIPA---IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
Y K A ++ LILTPTRELA+Q+H ++ A++ +I + GG+S K QE AL+
Sbjct: 64 YETKEHKAPRKVQALILTPTRELALQIHENVKIYAKYLNIISTTIYGGVSQKRQEEALKR 123
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
D+V+ATPGR++D L N + L D+ L+LDEAD++L++GF ++ +V PK+RQT
Sbjct: 124 GVDVVIATPGRLLD-LMNQKIISLQDVRYLVLDEADQMLDMGFIKDVTSIVDKTPKKRQT 182
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
MLFSAT+ + ++ L K L P R++ P + +T+ V + + N+ +L+ L
Sbjct: 183 MLFSATMPKQIEVLSKQILVNPERIAVTPVTQTLDAITQSVYMVNK---ANKTLLLIDLI 239
Query: 239 SKTFTSKVIIFSGTKQAAHRL-KILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
V++F+ TK A++L K L L +++ +HG+ +QA R AL F+K L
Sbjct: 240 YTLNMKSVLVFTKTKHGANKLVKNLMNLG-IESEPIHGSKSQAARERALANFKKGKTKIL 298
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATD+AARG+DI + VIN+ P +Y+HR+GRT RAG G A++ V +++ LL
Sbjct: 299 VATDIAARGIDIEALDYVINFELPEVPETYIHRIGRTGRAGLSGMALSLVDPSEQKLLTQ 358
Query: 358 IAKRAGSKLKS 368
+ K SK+++
Sbjct: 359 VEKHINSKIEA 369
>gi|342218233|ref|ZP_08710855.1| DEAD-box ATP-dependent RNA helicase CshA [Megasphaera sp. UPII
135-E]
gi|341590668|gb|EGS33904.1| DEAD-box ATP-dependent RNA helicase CshA [Megasphaera sp. UPII
135-E]
Length = 515
Score = 271 bits (693), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 152/379 (40%), Positives = 227/379 (59%), Gaps = 17/379 (4%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
LN+S +L+A +G+ +PTPIQA IP+AL G+D+ G A TG+GKTAAF +P LE++L
Sbjct: 8 LNISTTILQALNTMGFEEPTPIQAEAIPVALQGQDMIGQAQTGTGKTAAFGIPVLEKILA 67
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
K ++ ++L+PTRELA+QV + +AQ+T I+ + GG + Q LR P I
Sbjct: 68 SSK-TSNVQTIVLSPTRELAMQVAEELNHLAQYTSIQALPIYGGQDMERQLRRLRKHPQI 126
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+VATPGR+IDH++ ++ LD+++ ++LDEAD +L++GF +IH ++ P+ RQT+LFS
Sbjct: 127 IVATPGRLIDHMKRG-TIHLDEISTIVLDEADEMLDMGFIDDIHTIMSATPETRQTLLFS 185
Query: 183 ATLTEDVDELIKLSLTKP--LRLSADPSAKRPSTLTEEVVRIRRMREVNQEA--VLLSLC 238
AT+ + +L + L P +R+ A +T +++ + +++ VL L
Sbjct: 186 ATMPAPIQKLAQTFLKDPQIIRMKA-------KEVTMDLIEQSYIETPDRQKFDVLCRLL 238
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
IIF TK+ L + +HG+LTQA+R + FR++ +D L+
Sbjct: 239 DLQEPDLAIIFVRTKRRVDELSEALKKRGYSSEGIHGDLTQAKRDSVIRQFREKTIDILV 298
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATDVAARGLDI GV V NY P+D SYVHRVGRT RAG+ G A TFV + L+AI
Sbjct: 299 ATDVAARGLDISGVTHVFNYDLPQDPESYVHRVGRTGRAGKTGEATTFVIPRELEHLRAI 358
Query: 359 AKRAGSKLKSRIVAEQSIT 377
+ +K IV Q+ T
Sbjct: 359 ERL----IKRHIVRHQAPT 373
>gi|339243967|ref|XP_003377909.1| ATP-dependent rRNA helicase Rrp3 [Trichinella spiralis]
gi|316973226|gb|EFV56846.1| ATP-dependent rRNA helicase Rrp3 [Trichinella spiralis]
Length = 496
Score = 271 bits (693), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 147/359 (40%), Positives = 215/359 (59%), Gaps = 8/359 (2%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 68
L AC+ L ++ PT +Q IPLAL GRD+ G A TGSGKTAAFALP L+ LL P+R+
Sbjct: 73 LCEACKQLNWTDPTKVQIEAIPLALQGRDVIGLAETGSGKTAAFALPILQALLEHPQRLF 132
Query: 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 128
A L+LTPTRELA Q+ E + I+ ++VGG+ Q L P ++VATPG
Sbjct: 133 A---LVLTPTRELAYQIAEQFEALGACIGIKVAVIVGGVDMVTQALCLAKKPHVIVATPG 189
Query: 129 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 188
R++DHL N+ L L L++DEADR+L++ F +E+++++++ P+ R+T LFSAT+T+
Sbjct: 190 RLVDHLENTKGFSLRSLKYLVMDEADRILDMDFESEVNKILQVIPRERKTYLFSATMTKK 249
Query: 189 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSKTFTSKVI 247
V +L + SL P+++ + L + + I ++ ++ +L + K+ I
Sbjct: 250 VTKLQRASLQDPVKVEVSSKYQTVDKLQQHYIFIPQKFKDCYLVYILNEMAGKS----CI 305
Query: 248 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 307
+F+ T + R +L A LHG ++QA+RL AL F+ + LIATDVA+RGL
Sbjct: 306 VFTSTCANSLRTALLLRNLGFTAVPLHGQMSQAKRLGALNKFKAKDRSILIATDVASRGL 365
Query: 308 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 366
DI V VIN+ P Y+HRVGRTARAGR G ++TFVT D L + I G +L
Sbjct: 366 DIPHVDLVINFDIPTHSKDYIHRVGRTARAGRAGISITFVTQYDVELYQRIEYLLGKQL 424
>gi|398870252|ref|ZP_10625599.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM74]
gi|398209137|gb|EJM95820.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM74]
Length = 446
Score = 271 bits (693), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 151/373 (40%), Positives = 222/373 (59%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 QFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +PD
Sbjct: 64 GPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTMLF
Sbjct: 124 ILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECTNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E+I L P L + ++ T ++++ + ++E ++ L +
Sbjct: 183 SATTGGSGLREMIAKVLNNPEHLQLNAVSQLNDTTRQQIITADHNQ--HKEQIVNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+AT
Sbjct: 241 ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I +
Sbjct: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQSFERRTIKE 373
>gi|332375408|gb|AEE62845.1| unknown [Dendroctonus ponderosae]
Length = 469
Score = 271 bits (693), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 215/366 (58%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L L +ACE L + P+ IQ IP+AL G+DI G A TGSGKTAAFALP L+ LL
Sbjct: 43 DLGLVDVLCKACEQLKWKTPSKIQRESIPVALQGKDIIGLAETGSGKTAAFALPILQALL 102
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A LILTPTRELA Q+ E + ++ ++VGGL Q L P
Sbjct: 103 ENPQRHFA---LILTPTRELAFQISEQFEALGSGIGVKSIVIVGGLDMTSQALMLAKKPH 159
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++DHL N+ +L L L++DEADR+L + F AE+ +++++ P+ R+T LF
Sbjct: 160 IIIATPGRLVDHLSNTKGFNLRALKFLVMDEADRILNMDFEAEVDKILKVIPRERRTFLF 219
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSK 240
SAT+T+ V++L + L P+R+ + L + V I + ++V L+ + ++
Sbjct: 220 SATMTKKVNKLQRACLQDPVRVEVSTKYQTVEKLLQYYVFIPAKFKDV----YLVHILNE 275
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+ ++F T R +L A LHG ++Q +RL AL F+ ++ LI+T
Sbjct: 276 NAGNSFMVFCSTCNNTIRTALLLRNLGFTAVPLHGQMSQNKRLAALTKFKAKNRSILIST 335
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V VIN+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 336 DVASRGLDIPHVDIVINFDIPMHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRIEH 395
Query: 361 RAGSKL 366
G +L
Sbjct: 396 LIGKQL 401
>gi|146305460|ref|YP_001185925.1| DEAD/DEAH box helicase [Pseudomonas mendocina ymp]
gi|145573661|gb|ABP83193.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
Length = 628
Score = 271 bits (693), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 150/367 (40%), Positives = 217/367 (59%), Gaps = 19/367 (5%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL- 61
L LS L+RA EA GY++PTP+Q IP L GRD+ +A TG+GKT FALP LERL
Sbjct: 6 LGLSEALVRAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFP 65
Query: 62 ---------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 112
+ PK+ RVL+LTPTRELA QVH + A+ + GG+ Q
Sbjct: 66 DGHPDREQRHGPKQP---RVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMNPQ 122
Query: 113 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172
AL D++VA PGR++D L N ++DL + +L+LDEADR+L++GF ++ +++
Sbjct: 123 VQALAKGVDVLVACPGRLLD-LANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAKL 181
Query: 173 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMREVNQE 231
P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+ ++
Sbjct: 182 PAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTP----PNTTVERIEQRVFRLAASHKR 237
Query: 232 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 291
A+L L ++ +V++F+ TK A+RL L AA +HGN +Q R +AL F+
Sbjct: 238 ALLAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKA 297
Query: 292 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
V L+ATD+AARGLDI + V+N+ P YVHR+GRT RAGR G A++ V ++
Sbjct: 298 NKVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357
Query: 352 RSLLKAI 358
LLK+I
Sbjct: 358 EKLLKSI 364
>gi|167580312|ref|ZP_02373186.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH]
gi|167618435|ref|ZP_02387066.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
gi|257139776|ref|ZP_05588038.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 481
Score = 271 bits (693), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 147/365 (40%), Positives = 226/365 (61%), Gaps = 11/365 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L+ +LRA GY+ PTPIQA IP+ L+GRD+ G+A TG+GKTA+F+LP ++RLL
Sbjct: 15 QFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLL 74
Query: 62 YR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
+ P R P +R LILTPTRELA QV + + A+ T +R +V GG+ Q
Sbjct: 75 PQANTSASPARHP-VRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAE 133
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR +I++ATPGR++DH++ + +L + +L+LDEADR+L++GF ++ ++ L PK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQK-TANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQT+LFSAT + ++ +L L P + S ST+T+ V + E +++A ++
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVA---EGDKQAAVV 249
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
L +VI+F +K A RL + AA +HG+ +Q++R++AL+ F++ ++
Sbjct: 250 KLIRDRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIE 309
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARGLDI + VIN+ P + YVHR+GRT RAG G A++ + N+R L
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369
Query: 356 KAIAK 360
I K
Sbjct: 370 ADIEK 374
>gi|378949418|ref|YP_005206906.1| protein SrmB [Pseudomonas fluorescens F113]
gi|359759432|gb|AEV61511.1| SrmB [Pseudomonas fluorescens F113]
Length = 448
Score = 271 bits (693), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 151/373 (40%), Positives = 223/373 (59%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 QFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +PD
Sbjct: 64 GPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTMLF
Sbjct: 124 ILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECVNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E+I L P L + ++ ST ++++ + ++E ++ L +
Sbjct: 183 SATTGGSGLREMIAKVLNNPEHLQLNAVSQLNSTTRQQIITADHNQ--HKEQIVNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+AT
Sbjct: 241 ETYEKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ ++ +
Sbjct: 301 DVAARGLDVEGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSVER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQSFERRTIKE 373
>gi|398857768|ref|ZP_10613465.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM79]
gi|398905928|ref|ZP_10653194.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM50]
gi|398173884|gb|EJM61699.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM50]
gi|398240326|gb|EJN26009.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM79]
Length = 448
Score = 271 bits (693), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 151/373 (40%), Positives = 223/373 (59%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 QFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ AQFT I+ L+ GG K+Q LR +PD
Sbjct: 64 GPAKVRVSIKTLILLPTRELAQQTIKEVERFAQFTFIKSGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTMLF
Sbjct: 124 ILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVEECTNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E++ L P L + + +T ++++ + ++E ++ L +
Sbjct: 183 SATTGGSGLREMVAKVLNNPEHLQLNNVSDLNATTRQQIITADHNQ--HKEQIVNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ A R+ KA LHG+ Q R A++ ++ V L+AT
Sbjct: 241 ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGDKDQKDRKLAIDRLKQGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I +
Sbjct: 301 DVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQSFERRTIKE 373
>gi|317477122|ref|ZP_07936363.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
gi|316906665|gb|EFV28378.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
Length = 392
Score = 271 bits (693), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 147/365 (40%), Positives = 222/365 (60%), Gaps = 4/365 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+LN++ +L+A E GY PTPIQA IP L G+DI G A TG+GKTAAFA+P +++L
Sbjct: 25 DLNITESILKAIEEKGYVNPTPIQAKAIPALLVGKDILGCAQTGTGKTAAFAIPIIQQLQ 84
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+I+ LILTPTRELA+Q+ I+ A++T + ++ GG++ + Q L D
Sbjct: 85 ADRNLNKSIKALILTPTRELALQISECIDDYARYTQVCHGVIFGGVNQRTQVNMLHKGVD 144
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++D L N V L+++ +LDEADR+L++GF +I L+ PK +QT+LF
Sbjct: 145 ILVATPGRLLD-LMNQGYVRLNNIQHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQTLLF 203
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ + + L L +P+++S P + + + V + + + +L+S+ KT
Sbjct: 204 SATMPDTIISLTNSLLKQPVKISITPKSSTVDAIEQTVYFVEKKE---KSKLLISILHKT 260
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
V++FS TK A R+ + G A + + +HGN +Q R ALE F+ + +IATD
Sbjct: 261 QGQSVLVFSRTKHNADRIVRVLGKAGIGSQAIHGNKSQNARQSALENFKSGKIRVMIATD 320
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARG+DI + VINY P +YVHR+GRT RAG G A++F + +R L+ I K
Sbjct: 321 IAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNSGTALSFCSQEERKLVNDIQKL 380
Query: 362 AGSKL 366
G KL
Sbjct: 381 TGKKL 385
>gi|429220230|ref|YP_007181874.1| DNA/RNA helicase [Deinococcus peraridilitoris DSM 19664]
gi|429131093|gb|AFZ68108.1| DNA/RNA helicase, superfamily II [Deinococcus peraridilitoris DSM
19664]
Length = 477
Score = 271 bits (693), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 157/364 (43%), Positives = 218/364 (59%), Gaps = 6/364 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+L L RA LGY+KPTPIQA +P AL GRD+ G+A TGSGKTAAF LP L+RL
Sbjct: 12 LDLHASLQRAVGELGYAKPTPIQALALPPALQGRDVLGAAQTGSGKTAAFLLPILQRLQG 71
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P+ R L+L PTRELA Q+ +A+FTD+R V GG+S K QE A R D+
Sbjct: 72 LPRG--KTRALVLAPTRELAAQIEESALALAKFTDVRVASVFGGVSMKPQEKAFRGGTDL 129
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR++DH ++ + L+ L VL+LDEADR+L++GF +I ++R P RRQT+ FS
Sbjct: 130 IIATPGRLLDHFQHPYA-RLEALEVLVLDEADRMLDMGFLPDIRRVLRHLPARRQTLFFS 188
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+ + +L + L P+ + A+ A +T+ + + + + LL S
Sbjct: 189 ATMPAPILQLSRELLRDPVMVGAERKAAPAQGVTQSIYPVPEELKTDLLLELLRQPS--- 245
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
I+F+ TK A+RL A +KA +HGN +QA R EAL F+ L+ATD+
Sbjct: 246 MESAIVFTRTKHRANRLAEKLIKAGVKAERIHGNRSQAARTEALAGFKSGKYRVLVATDI 305
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
AARG+D+ + V+N+ P Y+HRVGRTARA G A+TFV + LKAI +
Sbjct: 306 AARGIDVEALGHVVNFDVPEIPEDYIHRVGRTARAEMTGEALTFVAPQEEGDLKAIERAV 365
Query: 363 GSKL 366
G KL
Sbjct: 366 GRKL 369
>gi|398878534|ref|ZP_10633653.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM67]
gi|398886701|ref|ZP_10641564.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM60]
gi|398188549|gb|EJM75850.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM60]
gi|398199789|gb|EJM86722.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM67]
Length = 448
Score = 271 bits (693), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 151/373 (40%), Positives = 223/373 (59%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 QFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ AQFT I+ L+ GG K+Q LR +PD
Sbjct: 64 GPAKIRVSIKTLILLPTRELAQQTIKEVERFAQFTFIKSGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTMLF
Sbjct: 124 ILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECTNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E++ L P L + + +T ++++ + ++E ++ L +
Sbjct: 183 SATTGGSGLREMVAKVLNNPEHLQLNNVSDLNATTRQQIITADHNQ--HKEQIVNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ A R+ KA LHG+ Q R A++ ++ V L+AT
Sbjct: 241 ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGDKDQKDRKLAIDRLKQGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I +
Sbjct: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQSFERRTIKE 373
>gi|443917623|gb|ELU38297.1| ATP-dependent rRNA helicase RRP3 [Rhizoctonia solani AG-1 IA]
Length = 1028
Score = 271 bits (693), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 156/364 (42%), Positives = 211/364 (57%), Gaps = 8/364 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L PLL A + +GYSKPT IQA IP AL G+D+ G A TGSGKTAAFALP L++L
Sbjct: 101 LGLISPLLEALKQVGYSKPTEIQAGIIPHALEGKDVIGVAETGSGKTAAFALPILQKLWD 160
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P+ + +L PTRELA Q+ E + +RC +VGG+ Q AL P I
Sbjct: 161 EPR---GLFACVLAPTRELAYQIAQQFEALGSAIGVRCATIVGGMDMMSQSIAL-GKPHI 216
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+VATPGR+ DHL N+ L L L+LDEADRLL++ F I +++++ P+ R T LFS
Sbjct: 217 IVATPGRLNDHLENTKGFSLRGLRYLVLDEADRLLDMDFGPVIDKILKVLPRERNTFLFS 276
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT++ V +L + SL P+R+ + STL + + N++ L+ L ++
Sbjct: 277 ATMSTKVAKLQRASLQNPVRVEVNGKYSTVSTLLQYYLLTPF---ANKDVHLVHLANELA 333
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+ +IIF+ T A RL ++ A LHG L+Q+ RL AL F+ LIATDV
Sbjct: 334 ANSIIIFTRTVHDAQRLSMVLRNLGFPAVPLHGQLSQSARLGALNKFKAGGRSLLIATDV 393
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+ GLDI V VIN+ P Y+HRVGRTARAGR G ++T VT D LL+ I
Sbjct: 394 AS-GLDIPTVDVVINFDIPTHSKDYIHRVGRTARAGRAGKSITLVTQYDVELLQRIEGVI 452
Query: 363 GSKL 366
G K+
Sbjct: 453 GKKM 456
>gi|170093371|ref|XP_001877907.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647766|gb|EDR12010.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 441
Score = 271 bits (693), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 157/366 (42%), Positives = 213/366 (58%), Gaps = 6/366 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL + PLL+A E L ++ PT IQ CIP A+ GRDI G A TGSGKT AF +P L RL
Sbjct: 8 ELGICAPLLQALEELKHTTPTEIQTGCIPQAIAGRDIIGIAPTGSGKTLAFVIPILHRLW 67
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA-LRSMP 120
P+ A +L+PTRELA Q+ + E + ++ ++VGG ++Q+ L P
Sbjct: 68 DNPQGYFAC---VLSPTRELAYQISAQFEALGAAMGVQSVVIVGGDDDRVQQAVRLAQKP 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
I+VATPGR+ DHL+++ L L L+LDEADRLL+L F EI E+++ PK R T L
Sbjct: 125 HIIVATPGRLHDHLKSTKGFSLRSLKHLVLDEADRLLDLDFQREITEIMQSIPKERCTYL 184
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T +V +L + SL+ P+R+ D S R +T++ V V +E L+ L +
Sbjct: 185 FSATMTANVSKLQRASLSDPVRV--DASLFRYTTVSTLVQHYLLCPLVEKEVTLVYLINS 242
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+ +I+F T A RL I+ A LHG LTQ+QRL A F+ L+AT
Sbjct: 243 LVQNLIIVFVRTVADAKRLSIILRSLGFDAVPLHGELTQSQRLGAFTRFKSGKSKILVAT 302
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLD+ V VINY P Y+HRVGRTARAGR G ++ VT D L+ + K
Sbjct: 303 DVASRGLDVPNVDVVINYDTPTHSKDYIHRVGRTARAGRAGKSILMVTQYDAELMLRLEK 362
Query: 361 RAGSKL 366
KL
Sbjct: 363 VLNQKL 368
>gi|398999282|ref|ZP_10702030.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM18]
gi|398132217|gb|EJM21499.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM18]
Length = 448
Score = 271 bits (693), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 152/373 (40%), Positives = 222/373 (59%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 QFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ AQFT I+ L+ GG K+Q LR +PD
Sbjct: 64 GPAKVRVSIKTLILLPTRELAQQTIKEVERFAQFTFIKSGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTMLF
Sbjct: 124 ILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECTNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E+I L P L + ++ T ++++ + ++E ++ L +
Sbjct: 183 SATTGGSGLREMIAKVLNNPEHLQLNAVSQLNDTTRQQIITADHNQ--HKEQIVNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+AT
Sbjct: 241 ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I +
Sbjct: 301 DVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQSFERRTIKE 373
>gi|254374244|ref|ZP_04989726.1| hypothetical protein FTDG_00409 [Francisella novicida GA99-3548]
gi|151571964|gb|EDN37618.1| hypothetical protein FTDG_00409 [Francisella novicida GA99-3548]
Length = 441
Score = 271 bits (693), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 144/366 (39%), Positives = 219/366 (59%), Gaps = 5/366 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ + A E GY+KPTPIQA IP+ L G D+ SA TG+GKTA F LP ++RLL
Sbjct: 5 DLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQRLL 64
Query: 62 YRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+PK + I+ LILTPTRELA Q+ I+ A T IR ++ GG+S Q LR
Sbjct: 65 DQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRKGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
+I++ATPGR++D L + +V D L +LDEADR+L++GF ++ ++ +L PK+ QT++
Sbjct: 125 EILIATPGRLLD-LYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQTLM 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT + ++ L L P +SAD +T+++ + + ++N L+SL
Sbjct: 184 FSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKIN---ALISLIKD 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++FS TK A+++ A + ++ +HGN +Q R +AL F+ ++ L+AT
Sbjct: 241 QNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARG+DI + VIN P YVHR+GRT RAG+EG A++ V+ ++ L I
Sbjct: 301 DIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNIEH 360
Query: 361 RAGSKL 366
G L
Sbjct: 361 LIGHLL 366
>gi|170750207|ref|YP_001756467.1| DEAD/DEAH box helicase [Methylobacterium radiotolerans JCM 2831]
gi|170656729|gb|ACB25784.1| DEAD/DEAH box helicase domain protein [Methylobacterium
radiotolerans JCM 2831]
Length = 506
Score = 271 bits (693), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 146/359 (40%), Positives = 219/359 (61%), Gaps = 6/359 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L++P+LRA GY PTPIQA IP A+ GRD+CG A TG+GKTAAFALP L RL
Sbjct: 6 DFGLAQPVLRALSEAGYVAPTPIQAQAIPPAMEGRDLCGIAQTGTGKTAAFALPILHRLS 65
Query: 62 YRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
+R P RVL+L+PTRELA Q+ + +V GG++ QE AL
Sbjct: 66 LSDRRAPRRGCRVLVLSPTRELANQIAESFTDYGRHLSYTTTVVFGGVTISRQERALAPG 125
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
DI+VATPGR+ID L + S+ L+ + +L+LDEAD++L+LGF + +V++ P++RQ++
Sbjct: 126 VDILVATPGRLID-LVDRRSLTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPEKRQSL 184
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
FSAT+ +++ L LT P++++ P A + +EV+ + ++A+L +
Sbjct: 185 FFSATMPKNIAGLAAQYLTDPVQVAVTPVATTAERVEQEVIFVHTG---AKQALLGHILR 241
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+V++F+ TK A R+ + AA +HGN +Q QR AL F+ L+A
Sbjct: 242 DPAIERVLVFTRTKHGADRVVRGLDKVGIAAAAIHGNKSQPQRERALAAFKDGSCRVLVA 301
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
TD+AARG+D+ GV V+N+ P SYVHR+GRTARAG +G A++F D +++ L+ I
Sbjct: 302 TDIAARGIDVEGVSHVVNFDLPNVPESYVHRIGRTARAGADGLAISFCNDEEKAYLRDI 360
>gi|328870452|gb|EGG18826.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 507
Score = 271 bits (692), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 145/357 (40%), Positives = 215/357 (60%), Gaps = 5/357 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + ++ AC +G+ KPT IQ IP A+ GRDI G A TGSGKTAAFA+P L++LL
Sbjct: 86 QLGMHPQIIEACVRMGFKKPTEIQRESIPHAIAGRDIIGLAQTGSGKTAAFAIPILQQLL 145
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ + A LIL+PTRELA Q+ E + ++C ++VGG+ Q L P
Sbjct: 146 QSPQPLFA---LILSPTRELAFQISQQFEALGAVIGVKCGVLVGGMDVMQQAMVLARKPH 202
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+V TPGR++ HL N+ L L L++DEADRLL + F EI++++++ PK R T LF
Sbjct: 203 IIVGTPGRVMYHLENTKGFHLKALKFLVMDEADRLLSMDFEEEINKILKVIPKNRNTYLF 262
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T V +L K SL P+++ ++ + ST+ V + + +++ L + ++
Sbjct: 263 SATMTSKVAKLQKASLVNPIKVQV--ASTKYSTVDTLVQQYCFIPYQHKDCYLTYILNEL 320
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ I+F T A++RL ++ L A ++GN+ Q +RL +L F+ + L+ATD
Sbjct: 321 SGNSAIVFVATCAASNRLSVMLRNLGLGAIPINGNMDQTKRLASLNKFKSSVKNILVATD 380
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
VAARGLDI V V+NY P + YVHRVGRTARAG+ G A+T VT D + + I
Sbjct: 381 VAARGLDIPSVGLVVNYDIPVNSKEYVHRVGRTARAGQSGRAITLVTQYDVEVYQRI 437
>gi|359437542|ref|ZP_09227600.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20311]
gi|359445111|ref|ZP_09234864.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20439]
gi|358027712|dbj|GAA63849.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20311]
gi|358041038|dbj|GAA71113.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20439]
Length = 465
Score = 271 bits (692), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 149/362 (41%), Positives = 215/362 (59%), Gaps = 5/362 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS+ L+ A GY PTPIQA IP + RD+ +A TG+GKTA F LP +ERL
Sbjct: 6 LGLSQSLVNAVLEKGYETPTPIQAQAIPAIIARRDVMAAAQTGTGKTAGFTLPLIERLSS 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K + +R LILTPTRELA+QV +E+ A+ +++ +V GG+ Q LR D
Sbjct: 66 GTKAKSNHVRALILTPTRELALQVSENVEEYAKHSNVSSFVVYGGVKINPQMQRLRKGVD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR+ID L N +V D + VL+LDEADR+L++GF +I L+ P++RQ ++F
Sbjct: 126 ILVATPGRLID-LHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPEKRQNLMF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++D+ L K + P+ +S ++T+ V + + R+ A+L L
Sbjct: 185 SATFSDDIRALAKGLINDPVEISVAAKNTTAKSVTQSVYAVDKARKT---ALLSHLIRSN 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++FS TK A+RL + A +HGN +Q R++ALE F+ V L+ATD
Sbjct: 242 DWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALEGFKSGEVRVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+ ARGLDI+ + V+NY P YVHR+GRT RAG G+A++FVT +D L I +
Sbjct: 302 IVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTVDDAVDLYGIERF 361
Query: 362 AG 363
G
Sbjct: 362 IG 363
>gi|333898539|ref|YP_004472412.1| DEAD/DEAH box helicase [Pseudomonas fulva 12-X]
gi|333113804|gb|AEF20318.1| DEAD/DEAH box helicase domain protein [Pseudomonas fulva 12-X]
Length = 615
Score = 271 bits (692), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 153/375 (40%), Positives = 220/375 (58%), Gaps = 19/375 (5%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL- 61
L LS L+RA EA GY++PTP+Q IP AL GRD+ +A TG+GKT FALP LERL
Sbjct: 6 LGLSEALVRAVEAAGYTQPTPVQQRAIPAALQGRDLMVAAQTGTGKTGGFALPILERLFP 65
Query: 62 ---------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 112
+ PK+ RVL+LTPTRELA QVH + A+ + GG+ Q
Sbjct: 66 NGHPDREQRHGPKQP---RVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMNPQ 122
Query: 113 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172
AL D++VA PGR++D L SVDL + +L+LDEADR+L++GF ++ +++
Sbjct: 123 VQALAKGVDVLVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFIHDVKKVLARL 181
Query: 173 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMREVNQE 231
P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R++ ++
Sbjct: 182 PAKRQNLLFSATFSKDITDLASKLLHDPERIEVTP----PNTTVERIEQRVFRLQASHKR 237
Query: 232 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 291
A+L L + +V++F+ TK A+RL L AA +HGN +Q R +AL F+
Sbjct: 238 ALLAHLITAGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKA 297
Query: 292 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
V L+ATD+AARGLDI + V+N+ P YVHR+GRT RAGR G A++ V ++
Sbjct: 298 NKVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357
Query: 352 RSLLKAIAKRAGSKL 366
LLK+I + K+
Sbjct: 358 EKLLKSIERMTKQKI 372
>gi|385792772|ref|YP_005825748.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|328676918|gb|AEB27788.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida Fx1]
Length = 442
Score = 271 bits (692), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 144/366 (39%), Positives = 219/366 (59%), Gaps = 5/366 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ + A E GY+KPTPIQA IP+ L G D+ SA TG+GKTA F LP ++RLL
Sbjct: 5 DLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQRLL 64
Query: 62 YRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+PK + I+ LILTPTRELA Q+ I+ A T IR ++ GG+S Q LR
Sbjct: 65 DQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRKGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
+I++ATPGR++D L + +V D L +LDEADR+L++GF ++ ++ +L PK+ QT++
Sbjct: 125 EILIATPGRLLD-LYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQTLM 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT + ++ L L P +SAD +T+++ + + ++N L+SL
Sbjct: 184 FSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKIN---ALISLIKD 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++FS TK A+++ A + ++ +HGN +Q R +AL F+ ++ L+AT
Sbjct: 241 QNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARG+DI + VIN P YVHR+GRT RAG+EG A++ V+ ++ L I
Sbjct: 301 DIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNIEH 360
Query: 361 RAGSKL 366
G L
Sbjct: 361 LIGHLL 366
>gi|344303537|gb|EGW33786.1| ATP-dependent rRNA helicase RRP3 [Spathaspora passalidarum NRRL
Y-27907]
Length = 475
Score = 271 bits (692), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 146/365 (40%), Positives = 213/365 (58%), Gaps = 6/365 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L LL + +++ ++KPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L+ L
Sbjct: 67 ELKLVPELLESIQSMKFTKPTPIQSEAIPHALEGHDIIGLAQTGSGKTAAFAIPILQALW 126
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ P L+L PTRELA Q+ + + +R +VGG+ Q L P
Sbjct: 127 --EAQSPYF-ALVLAPTRELAFQIKETFDALGSTMGLRSVCIVGGMDMMDQARDLMRKPH 183
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++DHL + L DL L++DEADRLL++ F + ++++ P +R T LF
Sbjct: 184 VIVATPGRIMDHLETTKGFKLKDLKYLVMDEADRLLDMDFGPALDRILKVIPTKRTTYLF 243
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T +++L + SL P+R++ + L + ++ + + + +L+ L S+
Sbjct: 244 SATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVH---DGYKNTILIHLLSEY 300
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+I+F+ T A R +L + A LHG L+QAQRL +L F+ + + LIATD
Sbjct: 301 EGKLIIVFTRTVAHAQRTALLCRILGFNAVPLHGQLSQAQRLGSLNKFKSRSANILIATD 360
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V VINY P D +Y+HRVGRTARAGR G +++ +T D + I
Sbjct: 361 VAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRIESV 420
Query: 362 AGSKL 366
G KL
Sbjct: 421 LGKKL 425
>gi|261415437|ref|YP_003249120.1| DEAD/DEAH box helicase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261371893|gb|ACX74638.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 486
Score = 271 bits (692), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 153/364 (42%), Positives = 220/364 (60%), Gaps = 10/364 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L+ PL RA A+GY PTPIQ IP L G+D+ G A TG+GKTAAFALP L+RLL
Sbjct: 5 ELPLANPLQRAVRAVGYETPTPIQERSIPSLLEGKDLLGIAQTGTGKTAAFALPILQRLL 64
Query: 62 YRPK-RIP-AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
K R P R LIL PTRELA+QV + AQFT I + GG++ Q+ L
Sbjct: 65 DSGKFRSPKTCRALILLPTRELAIQVEDCFREYAQFTAISTACIFGGVNDNPQKQKLIRG 124
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
D++VATPGR++D L ++ L L +LDEADR+L++GF +I ++V + P+ RQ +
Sbjct: 125 VDVLVATPGRLLD-LIGQKAISLKKLEFFVLDEADRMLDMGFIHDIRKVVAMLPQDRQNL 183
Query: 180 LFSATLTEDVDELIKLSL-TKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS-- 236
FSAT+ E++ +L L P+R+ P + + +E+ RI + R+ LL
Sbjct: 184 FFSATMPEEISKLAATILRPNPVRVEVAPQSTPIERIRQELYRIDKRRK----GALLKEL 239
Query: 237 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 296
L KV++F TK A ++ + A +K A +HGN +Q +R EAL F+ + +
Sbjct: 240 LAEHPEMKKVLVFCRTKHGADKIVRVLEKAGIKCAAIHGNKSQNRRQEALGNFKCEQIRV 299
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 356
L+ATD+AARG+D+ V V NY P + ++VHR+GRTARAG+EG A++F + ++ S L+
Sbjct: 300 LVATDIAARGIDVDDVSHVFNYDLPNEHETFVHRIGRTARAGKEGVAISFCSPDEESDLR 359
Query: 357 AIAK 360
I K
Sbjct: 360 GIEK 363
>gi|427413381|ref|ZP_18903573.1| hypothetical protein HMPREF9282_00980 [Veillonella ratti
ACS-216-V-Col6b]
gi|425716197|gb|EKU79183.1| hypothetical protein HMPREF9282_00980 [Veillonella ratti
ACS-216-V-Col6b]
Length = 523
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/383 (38%), Positives = 228/383 (59%), Gaps = 12/383 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL +S P+LRA +G+ +PTPIQ IP+A++G D+ G A TG+GKTAAF +P LE++
Sbjct: 7 ELQISEPILRALNDMGFEEPTPIQKEAIPVAMSGLDMIGQAQTGTGKTAAFGIPALEQV- 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + A++VLIL+PTRELA+QV + K+AQ T I+ + GG + Q +LR P
Sbjct: 66 --DEHLRAVQVLILSPTRELAIQVAEELNKMAQHTHIQALPIYGGQDIQRQFRSLRKNPQ 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DH+ S++ D++ V++LDEAD +L +GF +I++++ P++RQT+LF
Sbjct: 124 IIVATPGRLMDHMERG-SINFDNVKVIVLDEADEMLNMGFIDDINKILAAVPEQRQTLLF 182
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ + L + L +P + P+ + + + ++ ++ + LL + +
Sbjct: 183 SATMPPAIQTLAENYLKEPRLIRMKPTQVTMDLIEQYYIEVQDRQKFDLLCRLLDMQAPE 242
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
I+F TK+ + A +HG+L+Q +R + FR+ +D L+ATD
Sbjct: 243 LA---IVFGRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATD 299
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV V NY P+D SYVHRVGRT RAG+ G A TFV + L AI
Sbjct: 300 VAARGLDISGVTHVYNYDLPQDPESYVHRVGRTGRAGKAGMANTFVIPREMEHLHAI--- 356
Query: 362 AGSKLKSRIVAEQSITKWSKIIE 384
+L R +A + +++E
Sbjct: 357 --ERLTKRKIARRKAPSLGEVLE 377
>gi|119471733|ref|ZP_01614093.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
[Alteromonadales bacterium TW-7]
gi|119445356|gb|EAW26644.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
[Alteromonadales bacterium TW-7]
Length = 465
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 148/362 (40%), Positives = 214/362 (59%), Gaps = 5/362 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS+ L+ A GY PTPIQA IP + RD+ +A TG+GKTA F LP +ERL
Sbjct: 6 LGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIERLST 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
PK + +R LIL PTRELA+QV +E+ A+ +++ +V GG+ Q LR D
Sbjct: 66 GPKAKSNHVRALILAPTRELALQVSENVEEYAKHSNVSSFVVYGGVKINPQMQRLRKGVD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR+ID L N +V D + VL+LDEADR+L++GF +I L+ P +RQ ++F
Sbjct: 126 ILVATPGRLID-LHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQNLMF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++D+ L K + P+ +S ++T+ V + + R+ A+L L
Sbjct: 185 SATFSDDIRALAKGLINDPVEISVAAKNTTAKSVTQSVYAVDKGRKT---ALLSHLIRSN 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++FS TK A+RL + A +HGN +Q R++AL+ F+ V L+ATD
Sbjct: 242 DWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+ ARGLDI+ + V+NY P YVHR+GRT RAG G+A++FVT +D L I +
Sbjct: 302 IVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTVDDAVDLYGIERF 361
Query: 362 AG 363
G
Sbjct: 362 IG 363
>gi|269838391|ref|YP_003320619.1| DEAD/DEAH box helicase [Sphaerobacter thermophilus DSM 20745]
gi|269787654|gb|ACZ39797.1| DEAD/DEAH box helicase domain protein [Sphaerobacter thermophilus
DSM 20745]
Length = 526
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 156/370 (42%), Positives = 220/370 (59%), Gaps = 7/370 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L LS P+L+A +A+G+ +PTPIQ IPL L+GRD+ A TG+GKTAAFALP +ERL
Sbjct: 6 DLGLSEPVLKAIDAVGFEEPTPIQREAIPLLLSGRDLIAQAQTGTGKTAAFALPIIERLQ 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+R A L+L PTRELAVQV ++ + D R V GG + Q ALR +
Sbjct: 66 PNGRRPQA---LVLAPTRELAVQVAQTFHQLGRVRDTRVLAVYGGQPIERQLRALRHPVE 122
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+VV TPGR++DH+R ++DL +++ +++DEAD +L++GF ++ ++ P RQT LF
Sbjct: 123 VVVGTPGRVMDHIRRE-TLDLSNVSTVVIDEADEMLDMGFIEDVEWILDHVPAERQTALF 181
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ + V L + L P R++ +P +R + E + ++ EA+ L +T
Sbjct: 182 SATIPDRVAALARRYLRDPARVAVEP--ERVTVPQIEQTYVEVVQRAKVEALTRILDMET 239
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
S IIF TK+ L A LHG+L+Q QR + FR + LIATD
Sbjct: 240 PPSA-IIFCRTKRGVDELTQQLQSLGYAAEALHGDLSQVQRDRVMARFRSGQAELLIATD 298
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLD+ G+ VINY P D SYVHR+GRT RAGR G A+T VT +R LL+ I +
Sbjct: 299 VAARGLDVEGITHVINYDIPGDPESYVHRIGRTGRAGRAGAAITLVTPRERRLLREIERA 358
Query: 362 AGSKLKSRIV 371
G ++ R V
Sbjct: 359 TGVRMTRRGV 368
>gi|254372784|ref|ZP_04988273.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570511|gb|EDN36165.1| ATP-dependent RNA helicase RhlE [Francisella novicida GA99-3549]
Length = 442
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 144/366 (39%), Positives = 219/366 (59%), Gaps = 5/366 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ + A E GY+KPTPIQA IP+ L G D+ SA TG+GKTA F LP ++RLL
Sbjct: 5 DLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQRLL 64
Query: 62 YRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+PK + I+ LILTPTRELA Q+ I+ A T IR ++ GG+S Q LR
Sbjct: 65 DQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRKGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
+I++ATPGR++D L + +V D L +LDEADR+L++GF ++ ++ +L PK+ QT++
Sbjct: 125 EILIATPGRLLD-LYSQSAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQTLM 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT + ++ L L P +SAD +T+++ + + ++N L+SL
Sbjct: 184 FSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKIN---ALISLIKD 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++FS TK A+++ A + ++ +HGN +Q R +AL F+ ++ L+AT
Sbjct: 241 QNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARG+DI + VIN P YVHR+GRT RAG+EG A++ V+ ++ L I
Sbjct: 301 DIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNIEH 360
Query: 361 RAGSKL 366
G L
Sbjct: 361 LIGHLL 366
>gi|208779218|ref|ZP_03246564.1| dead/deah box helicase domain protein [Francisella novicida FTG]
gi|208745018|gb|EDZ91316.1| dead/deah box helicase domain protein [Francisella novicida FTG]
Length = 441
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 144/366 (39%), Positives = 219/366 (59%), Gaps = 5/366 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ + A E GY+KPTPIQA IP+ L G D+ SA TG+GKTA F LP ++RLL
Sbjct: 5 DLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQRLL 64
Query: 62 YRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+PK + I+ LILTPTRELA Q+ I+ A T IR ++ GG+S Q LR
Sbjct: 65 DQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRKGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
+I++ATPGR++D L + +V D L +LDEADR+L++GF ++ ++ +L PK+ QT++
Sbjct: 125 EILIATPGRLLD-LYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQTLM 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT + ++ L L P +SAD +T+++ + + ++N L+SL
Sbjct: 184 FSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKIN---ALISLIKD 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++FS TK A+++ A + ++ +HGN +Q R +AL F+ ++ L+AT
Sbjct: 241 QNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARG+DI + VIN P YVHR+GRT RAG+EG A++ V+ ++ L I
Sbjct: 301 DIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNIEH 360
Query: 361 RAGSKL 366
G L
Sbjct: 361 LIGHLL 366
>gi|395500069|ref|ZP_10431648.1| DEAD/DEAH box helicase [Pseudomonas sp. PAMC 25886]
Length = 448
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 220/366 (60%), Gaps = 4/366 (1%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 68
LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+ K
Sbjct: 11 LLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPILNRLIGPAKVRV 70
Query: 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 128
+I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +PDI++ TPG
Sbjct: 71 SIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPDILIGTPG 130
Query: 129 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL-TE 187
RMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV+ C R+QTMLFSAT
Sbjct: 131 RMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVQECVNRQQTMLFSATTGGS 189
Query: 188 DVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVI 247
+ +++ L P L + + ST ++++ V++E +L L + K I
Sbjct: 190 TLRDMVAKVLNNPEHLQVNNVSDLNSTTRQQIITAD--HNVHKEQILNWLLANETYQKAI 247
Query: 248 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 307
+F+ T+ A R+ KA LHG Q R A++ ++ V L+ATDVAARGL
Sbjct: 248 VFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVATDVAARGL 307
Query: 308 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 367
D+ + VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I + +
Sbjct: 308 DVDSLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIERYLKQSFE 367
Query: 368 SRIVAE 373
R + E
Sbjct: 368 RRTIKE 373
>gi|389722095|ref|ZP_10188778.1| ATP-dependent RNA helicase [Rhodanobacter sp. 115]
gi|388443987|gb|EIM00117.1| ATP-dependent RNA helicase [Rhodanobacter sp. 115]
Length = 437
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 150/360 (41%), Positives = 219/360 (60%), Gaps = 7/360 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L LLRA GY++PTPIQAA IP L G D+ +A TG+GKTAAFALP L+RL+
Sbjct: 6 LGLVPTLLRALAEQGYAEPTPIQAAAIPEVLAGHDLLAAAQTGTGKTAAFALPLLQRLID 65
Query: 63 RPKRIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P P RVLILTPTRELA Q+ + A++ +R ++ GG+ Q ALR D
Sbjct: 66 APAATPRRPRVLILTPTRELAAQIDDNLRAYAKYLHVRSAVIFGGVGMGPQINALRRGVD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+V+ATPGR+IDH++ +++L + VL+LDEADR+L++GF + ++ PK+RQT+LF
Sbjct: 126 VVIATPGRLIDHMQQR-NIELSGVDVLVLDEADRMLDMGFLPALKRILTAVPKQRQTLLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVR-IRRMREVNQEAVLLSLCSK 240
SAT + L + +P +S P P+T+T+ + + + + +LL + S+
Sbjct: 185 SATFAAPIKALAMQFMRQPREVSVSP----PNTVTQLITHHVHPVDASRKRDLLLHVLSQ 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+ ++FS TK A +L ++ L+AA +HGN +Q R AL F+ V L+AT
Sbjct: 241 DSRRQTLVFSRTKHGADKLVKFLEVSGLRAAAIHGNKSQNARTRALSDFKSGRVTVLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARG+DI + VIN+ P YVHR+GRT RAG EG A++ V+ ++ LL+ I K
Sbjct: 301 DIAARGIDIDQLPVVINHDLPMVAEDYVHRIGRTGRAGSEGLALSLVSHDESGLLRDIRK 360
>gi|114046344|ref|YP_736894.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-7]
gi|113887786|gb|ABI41837.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
Length = 549
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 148/376 (39%), Positives = 227/376 (60%), Gaps = 12/376 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+ +A GY P+PIQA IP LTG+D+ +A TG+GKTA F LP LE LL
Sbjct: 6 LGLSLPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE-LLS 64
Query: 63 RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+ + A IR L+LTPTRELA QV +E ++ +R +V GG+ Q LR
Sbjct: 65 KGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKLRHGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D++VATPGR++D ++ ++ V + L +L+LDEADR+L++GF +I +++ L P +RQ ++
Sbjct: 125 DVLVATPGRLLDLVQQNV-VKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQNLM 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++++ EL K + +P+ +S P +T+ + + + + ++ A+L+ L +
Sbjct: 184 FSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQK---SALLIQLIKQ 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++FS TK A+RL A + AA +HGN +Q R +AL F+ V L+AT
Sbjct: 241 EDWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V+ + LL+ I
Sbjct: 301 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEFKLLRDI-- 358
Query: 361 RAGSKLKSRIVAEQSI 376
+L +R++ Q I
Sbjct: 359 ---ERLINRVLERQEI 371
>gi|114706869|ref|ZP_01439769.1| Superfamily II DNA and RNA helicase [Fulvimarina pelagi HTCC2506]
gi|114537817|gb|EAU40941.1| Superfamily II DNA and RNA helicase [Fulvimarina pelagi HTCC2506]
Length = 457
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 152/367 (41%), Positives = 222/367 (60%), Gaps = 8/367 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+ PL RA L + PTPIQ IP AL GRD+ G A TG+GKTAAFALP L L+
Sbjct: 9 FGLAEPLTRALARLELTTPTPIQERAIPHALAGRDMLGIAQTGTGKTAAFALPLLHHLMT 68
Query: 63 RPKRIPAIRV---LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
+ P R LIL+PTRELAVQ+ I +++ T I C+V GG+S + Q AL
Sbjct: 69 VGGK-PTTRTTKALILSPTRELAVQIAESIADLSEGTPISHCVVFGGVSVRPQIQALARG 127
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
DI+VATPGR++D L ++DL + LILDEADR+L++GF ++ ++V CP RQ+M
Sbjct: 128 VDILVATPGRLLD-LMEQRAIDLRETRHLILDEADRMLDMGFVRDVMKIVGKCPDDRQSM 186
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
+FSAT+ + +++L K LT P ++S P+ + + V + + ++ L+ S
Sbjct: 187 MFSATMPKPIEDLSKKILTNPQKVSVTPAVVTVEKIAQSVFSVPQR---AKKHWLIDFVS 243
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
K T ++++F+ TK A+RL A ++A +HGN +Q R +AL F+ +D L+A
Sbjct: 244 KNDTGRIVVFTRTKHGANRLTSDLDKAGIQALAIHGNKSQTARQKALGAFQDGEIDVLVA 303
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TD+ ARG+ + + V+N+ P + SYVHR+GRTARAGR G A+ V ++R+ LK I
Sbjct: 304 TDIVARGIHVDDISHVVNFDLPEEPESYVHRIGRTARAGRSGQAIALVDPSERAKLKQII 363
Query: 360 KRAGSKL 366
K G L
Sbjct: 364 KLTGIDL 370
>gi|435852049|ref|YP_007313635.1| DNA/RNA helicase, superfamily II [Methanomethylovorans hollandica
DSM 15978]
gi|433662679|gb|AGB50105.1| DNA/RNA helicase, superfamily II [Methanomethylovorans hollandica
DSM 15978]
Length = 422
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 142/361 (39%), Positives = 218/361 (60%), Gaps = 6/361 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL- 60
L + + L RA E+ GY PTPIQA IP L RD+ G A TG+GKTAAF LP L++L
Sbjct: 5 NLKIKKTLQRALESEGYITPTPIQAQAIPHLLENRDLIGIAQTGTGKTAAFVLPILQKLS 64
Query: 61 -LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
+P + A RVL+L PTRELA Q+ QF R +V GG+ Q AL
Sbjct: 65 ETNKPSKSRAPRVLVLAPTRELAAQIGDSFSTYGQFIRFRYTVVFGGVGQGPQVKALAHG 124
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
D+++ATPGR++D L + V L+++ +LDEADR+L++GF +++ +V L P +RQ++
Sbjct: 125 VDVLIATPGRLLD-LLDQGHVKLNEVEFFVLDEADRMLDMGFIKDVYRIVPLLPVKRQSL 183
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
FSAT++ + EL + LT P+ + P A + + V + + N++ +LL L
Sbjct: 184 FFSATMSPQIAELARKLLTSPVHVEVSPQATTVEKIDQFVFFVD---QENKDNLLLGLLQ 240
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
V++F+ TK A+++ ++ ++A +HGN +Q QR +A++ F+ +V L+A
Sbjct: 241 HNHLRSVLVFTRTKHRANKVALMLNKNKIEADAIHGNKSQNQRTKAMDDFKSGNVRVLVA 300
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TD+AARG+DI + VINY P + +YVHR+GRTARAG +G A +F ++R L++I
Sbjct: 301 TDIAARGIDIEDISHVINYDLPNEPENYVHRIGRTARAGSDGTAYSFCAADERDYLRSIE 360
Query: 360 K 360
K
Sbjct: 361 K 361
>gi|430809219|ref|ZP_19436334.1| RNA helicase [Cupriavidus sp. HMR-1]
gi|429498363|gb|EKZ96873.1| RNA helicase [Cupriavidus sp. HMR-1]
Length = 498
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 152/365 (41%), Positives = 228/365 (62%), Gaps = 20/365 (5%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL------Y 62
+LRA GY+KPTPIQA IP+ L G+D+ G+A TG+GKTA FALP ++RLL
Sbjct: 26 VLRALTEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQRLLPLANASA 85
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P R P +R L+LTPTRELA QV+ + + A+ TD+R +V GG+ Q ALR +I
Sbjct: 86 SPARHP-VRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQTDALRRGVEI 144
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+VATPGR++DH++ SV+L + +L+LDEADR+L++GF ++ ++ L P +RQT+LFS
Sbjct: 145 LVATPGRLLDHVQQK-SVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAQRQTLLFS 203
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVR--IRRMREVNQEAVLLSL--- 237
AT + ++ +L L +P+ + A+ S T E VR + ++++ +++A ++ L
Sbjct: 204 ATFSPEIKKLASSYLKQPVTIEV---AR--SNSTNENVRQVVYQVQDGHKQAAVVHLLKQ 258
Query: 238 -CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 296
++ + + I+F +K RL + AA +HG+ TQ +R++ L+ F+ +D
Sbjct: 259 RANEQQSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLDGFKNGTIDA 318
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT-FVTDNDRSLL 355
L+ATDVAARGLDI + VIN+ P YVHR+GRT RAG G A++ FV ND LL
Sbjct: 319 LVATDVAARGLDIPAMPCVINFDLPFSAEDYVHRIGRTGRAGASGDALSIFVPGNDDRLL 378
Query: 356 KAIAK 360
I K
Sbjct: 379 ADIEK 383
>gi|399519079|ref|ZP_10759887.1| ATP-dependent RNA helicase [Pseudomonas pseudoalcaligenes CECT
5344]
gi|399112903|emb|CCH36445.1| ATP-dependent RNA helicase [Pseudomonas pseudoalcaligenes CECT
5344]
Length = 632
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 151/375 (40%), Positives = 220/375 (58%), Gaps = 19/375 (5%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL- 61
L LS L+RA EA GY++PTP+Q IP L GRD+ +A TG+GKT FALP LERL
Sbjct: 6 LGLSEALVRAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFP 65
Query: 62 ---------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 112
+ PK+ RVL+LTPTRELA QVH + A+ + GG+ Q
Sbjct: 66 DGHPDREQRHGPKQP---RVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMNPQ 122
Query: 113 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172
AL D++VA PGR++D L N ++DL + +L+LDEADR+L++GF ++ +++
Sbjct: 123 VQALAKGVDVLVACPGRLLD-LANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAKL 181
Query: 173 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMREVNQE 231
P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+ ++
Sbjct: 182 PAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTP----PNTTVERIEQRVFRLAASHKR 237
Query: 232 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 291
A+L L ++ +V++F+ TK A+RL L AA +HGN +Q R +AL F+
Sbjct: 238 ALLAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKA 297
Query: 292 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
V L+ATD+AARGLDI + V+N+ P YVHR+GRT RAGR G A++ V ++
Sbjct: 298 NKVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357
Query: 352 RSLLKAIAKRAGSKL 366
LLK+I + K+
Sbjct: 358 EKLLKSIERMTKQKI 372
>gi|258511452|ref|YP_003184886.1| DEAD/DEAH box helicase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257478178|gb|ACV58497.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 541
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 163/397 (41%), Positives = 231/397 (58%), Gaps = 31/397 (7%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+R +L+A +G+ +P+PIQAACIP+ L GRD+ G A TG+GKTAAF +P +ER+
Sbjct: 22 FGLNRRVLQAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFGIPLVERVST 81
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P+ ++ ++LTPTRELA+QV I KIA++ +R + GG S Q AL+ I
Sbjct: 82 EPR----VQAIVLTPTRELAIQVAGEIRKIAKYKRVRSVPIYGGQSIVHQIRALKQGVQI 137
Query: 123 VVATPGRMIDHL-RNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
V+ TPGR++DH+ R ++S L D+ +++LDEAD +L++GF +I ++R P RQTMLF
Sbjct: 138 VIGTPGRVLDHIHRGTLS--LSDVRMVVLDEADEMLDMGFIDDIEAILRETPSDRQTMLF 195
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV----LLSL 237
SAT +V L LR DP T+ V + ++ +V + + L SL
Sbjct: 196 SATFPNEVKRL-------ALRYMRDPQH---ITVNRGEVTVPQIDQVCYKVLERNKLDSL 245
Query: 238 CSKTFTSKV---IIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 294
C + + IIF TK+ L A LHG+L+QAQR + FRK +
Sbjct: 246 CRIVDSEDIQLGIIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEI 305
Query: 295 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 354
+ L+ATDVAARGLD+ V VINY P+D SYVHR+GRT RAG+ G A+T VT + L
Sbjct: 306 ELLVATDVAARGLDVDDVTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYKL 365
Query: 355 LKAIAKRAGSKLKSR------IVAEQSITKW-SKIIE 384
LK I + K+ R VAE+ W SKI++
Sbjct: 366 LKQIEREIKQKITVREVPSLEDVAERQAEMWRSKIVD 402
>gi|398941979|ref|ZP_10670072.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM41(2012)]
gi|398161344|gb|EJM49580.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM41(2012)]
Length = 448
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 150/373 (40%), Positives = 223/373 (59%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 QFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ AQFT I+ L+ GG K+Q LR +PD
Sbjct: 64 GPAKVRVSIKTLILLPTRELAQQTIKEVERFAQFTFIKSGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTMLF
Sbjct: 124 ILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVEECTNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E++ L P L + + +T ++++ + ++E ++ L +
Sbjct: 183 SATTGGSGLREMVAKVLNNPEHLQLNNVSDLNATTRQQIITADHNQ--HKEQIVNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ A R+ KA LHG+ Q R A++ ++ V L+AT
Sbjct: 241 ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGDKDQKDRKLAIDRLKQGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ ++ +
Sbjct: 301 DVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSVER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQSFERRTIKE 373
>gi|332286324|ref|YP_004418235.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
gi|330430277|gb|AEC21611.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
Length = 477
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 160/383 (41%), Positives = 225/383 (58%), Gaps = 16/383 (4%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L+ PLLRA GY PTPIQA IP + G D+ +A TG+GKTA F LP L RLL
Sbjct: 10 LGLAEPLLRAVTDTGYEHPTPIQAQAIPQVMQGGDLLAAAQTGTGKTAGFTLPILHRLLQ 69
Query: 63 RP--KRIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
P R P RVLILTPTREL QV + ++ T IR ++ GG++ Q +ALR
Sbjct: 70 NPAQGRKPGQPRVLILTPTRELTAQVEESVRTYSKHTSIRSMVMFGGVNINPQISALRKP 129
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
DI+VATPGR++DH + +VDL + +L+LDEADR+L++GF +I ++ L PK+RQ +
Sbjct: 130 LDILVATPGRLLDHAQQK-TVDLSAVEILVLDEADRMLDMGFIRDIRRILALLPKQRQNL 188
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKR--PSTLTEEVVRIRRMREVNQEAVLLSL 237
LFSAT ++++ L K L P+ +S A+R S L E+ V + + ++ +L +
Sbjct: 189 LFSATFSDEIRALSKGVLNDPIEISV---ARRNTASELVEQSVVL--TEQAHKRDLLSHI 243
Query: 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
++ +V++F+ TK A+RL L AA +HGN +QA R AL F+ V L
Sbjct: 244 IRESGWHQVLVFTRTKHGANRLAEKLVKDGLSAAAIHGNKSQAARTRALAGFKDGKVAVL 303
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATD+AARG+DI + V+N+ P YVHR+GRT RAG G A++ V + LL A
Sbjct: 304 VATDIAARGIDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGSTGSAMSLVDRTEIKLLSA 363
Query: 358 IAKRAGSKLKSRIVAEQSITKWS 380
I KL R + +I WS
Sbjct: 364 I-----EKLIKRPIERTTIEGWS 381
>gi|398838810|ref|ZP_10596069.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM102]
gi|398114480|gb|EJM04299.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM102]
Length = 448
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 151/373 (40%), Positives = 223/373 (59%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 QFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ AQFT I+ L+ GG K+Q LR +PD
Sbjct: 64 GPAKVRVSIKTLILLPTRELAQQTIKEVERFAQFTFIKSGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTMLF
Sbjct: 124 ILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECTNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E++ L P L + + +T ++++ + ++E ++ L +
Sbjct: 183 SATTGGSGLREMVAKVLNNPEHLQLNNVSDLNATTRQQIITADHNQ--HKEQIVNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K I+F+ T+ A R+ KA LHG+ Q R A++ ++ V L+AT
Sbjct: 241 ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGDKDQKDRKLAIDRLKQGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I +
Sbjct: 301 DVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQSFERRTIKE 373
>gi|424778219|ref|ZP_18205170.1| ATP-dependent RNA helicase [Alcaligenes sp. HPC1271]
gi|422887047|gb|EKU29458.1| ATP-dependent RNA helicase [Alcaligenes sp. HPC1271]
Length = 487
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 155/374 (41%), Positives = 225/374 (60%), Gaps = 8/374 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L+ PLLRA GY+ PTPIQA IP + G D+ +A TG+GKTA F LP L RLL
Sbjct: 10 LELAEPLLRAVTDAGYTHPTPIQAQAIPKVIEGGDLLAAAQTGTGKTAGFTLPILHRLLN 69
Query: 63 RPK--RIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
P+ R P R LIL PTRELA QV + +Q T +R ++ GG++ Q ALR
Sbjct: 70 NPQQNRKPGRPRALILAPTRELAAQVEESVRLYSQHTRLRSMVMFGGVNINPQFHALRKP 129
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
DI+VATPGR++DH+R +VDL + +L+LDEADR+L++GF +I +++ L P RQT+
Sbjct: 130 LDILVATPGRLLDHVRQR-TVDLTGVEILVLDEADRMLDMGFIRDIRKIISLMPVDRQTL 188
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
LFSAT ++++ EL + SL P ++ +T++V+ + ++ +L +
Sbjct: 189 LFSATFSDEIRELARGSLNNPDEVAVAARNTTNELITQQVIL---ADQAHKRDLLSHIIR 245
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
++ ++V++F TK A+RL + A LHGN +QA R AL F+ V L+A
Sbjct: 246 ESGWNQVLVFCRTKHGANRLAEKLSKDGMAAEALHGNKSQAARTRALAGFKNGKVVVLVA 305
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TD+AARGLDI + V+N+ P YVHR+GRT RAG EG A++ V ++ LLK I
Sbjct: 306 TDIAARGLDIDQLPYVVNFELPNVPEDYVHRIGRTGRAGSEGVALSLVDRSEMRLLKQIE 365
Query: 360 KRAGSKLKSRIVAE 373
+ + ++ RIV E
Sbjct: 366 RMTRNPIE-RIVVE 378
>gi|406939141|gb|EKD72227.1| hypothetical protein ACD_45C00735G0003 [uncultured bacterium]
Length = 427
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/370 (39%), Positives = 218/370 (58%), Gaps = 4/370 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ NLS P+ +A +A GY KPTPIQA IP L G+DI SA TG+GKTA+F LP L RL
Sbjct: 5 QFNLSPPIAKALDACGYKKPTPIQAKSIPEILLGKDIVASAQTGTGKTASFVLPALHRL- 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K R+LILTPTRELA Q+ + I K +F + +VGG+ + Q AL D
Sbjct: 64 STSKATSKPRILILTPTRELANQITTAIGKYGKFLRVNIASLVGGMPYRQQLRALSHSVD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+++ATPGR++DH+ + +DL + +LILDEADR+L++GF ++ E+ + P RQT+LF
Sbjct: 124 MIIATPGRLLDHMSHR-RLDLSAIEMLILDEADRMLDMGFIDDVREIAKATPSNRQTLLF 182
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ + ++I+ L P+++ P +T+E+ + +++ +L+ +
Sbjct: 183 SATVDNRLSQVIRQLLNNPIKIDFSHEQLTPEKITQELYMADNPQ--HKKRLLMHFVTDK 240
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
K IIFS TK A +L AA LHG+L Q R +E R+ + FL+ATD
Sbjct: 241 NIFKAIIFSATKINADKLAGELTDQGYAAAALHGDLKQNVRNRTMERMRRNKIQFLVATD 300
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARG+D+ + VINY P+ YVHR+GRT RAG+ G A++ T +D ++ I +
Sbjct: 301 VAARGIDVQDITHVINYDLPKFSEDYVHRIGRTGRAGKTGIAISLATSSDIRHIQRIERL 360
Query: 362 AGSKLKSRIV 371
L +I+
Sbjct: 361 MNQVLTRKII 370
>gi|95928808|ref|ZP_01311554.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
gi|95135153|gb|EAT16806.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
Length = 426
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 158/382 (41%), Positives = 228/382 (59%), Gaps = 15/382 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L LS LLRA GYS+PTPIQA IP L G DI +A TG+GKTA F LP L+RL
Sbjct: 6 DLGLSAELLRAVADQGYSEPTPIQAQAIPAVLNGGDILAAAQTGTGKTAGFTLPVLQRLS 65
Query: 62 YRP---KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
P R P +R L+LTPTRELA QV + + ++ +R +V GG+ Q + LR
Sbjct: 66 DTPVSSGRRP-VRALVLTPTRELAAQVGASVADYGKYLPLRSAIVFGGVKINPQISMLRK 124
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
DI+VATPGR++DH+ + +VDL + +LILDEADR+L++GF +I +++ L PK+RQ
Sbjct: 125 GVDILVATPGRLLDHV-SQKTVDLSKVEILILDEADRMLDMGFIRDIRKVLALLPKKRQN 183
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS-L 237
+LFSAT ++D+ L L P + R +T +E+V + + E +++ LLS +
Sbjct: 184 LLFSATFSDDIKRLADSLLNTPTLIEV----ARRNTASEQVEQSVHLIEKSRKRELLSHM 239
Query: 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
+V++F+ TK+ A+RL LK+ +HGN TQ R +AL F+ L
Sbjct: 240 IGSQNWQQVLVFTRTKRGANRLAQQLEKDGLKSTAIHGNKTQGARTKALADFKAGRARVL 299
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATD+AARGLDI + V+NY P YVHR+GRT RAGR+G AV+ V ++ L+
Sbjct: 300 VATDIAARGLDIDQLPNVVNYELPDVPEDYVHRIGRTGRAGRDGKAVSLVCSEEKKQLRD 359
Query: 358 IAKRAGSKLKSRIVAEQSITKW 379
I +L R +A++ I +
Sbjct: 360 I-----ERLLKRPIAKEVIAGY 376
>gi|260223394|emb|CBA33917.1| Putative ATP-dependent RNA helicase rhlE [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 520
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 151/373 (40%), Positives = 222/373 (59%), Gaps = 12/373 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ PL RA +GY+ TPIQA IP+ LTG+D+ G+A TG+GKTAAFALP L+RL+
Sbjct: 26 QLQLADPLARAVAEMGYTTMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFALPLLQRLM 85
Query: 62 YR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
P R P +R L+L PTRELA QV ++ A++T++R +V GG+ K Q
Sbjct: 86 KHENASTSPARHP-VRALVLLPTRELADQVAQQVKLYAKYTNLRSAVVFGGMDMKPQTLE 144
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
L++ +++VATPGR++DH+ +V L+ + ++LDEADR+L++GF ++ ++ PK
Sbjct: 145 LKAGVEVLVATPGRLLDHIEAKNAV-LNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKT 203
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
R T+LFSAT + ++ L L P+ + S ST+ + R+ + ++ LL
Sbjct: 204 RTTLLFSATFSPEIKRLANSYLQNPITIEVARSNATASTVEQHFYRVN---DDDKRHALL 260
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
+ + +F +K RL L+AA LHG+ +Q +RL+ALE F+K VD
Sbjct: 261 QIVRSKDIKQAFVFVNSKLGCARLTRALERDGLRAAALHGDKSQDERLKALEAFKKGEVD 320
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV-TDNDRSL 354
L+ TDVAARGLDI V V N P + YVHR+GRT RAG G AV+FV ND L
Sbjct: 321 LLVCTDVAARGLDIKDVPAVFNMDIPFNAEDYVHRIGRTGRAGASGLAVSFVGGGNDARL 380
Query: 355 LKAIAKRAGSKLK 367
+ I K +K++
Sbjct: 381 VADIEKLIKTKIE 393
>gi|384135153|ref|YP_005517867.1| DEAD/DEAH box helicase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339289238|gb|AEJ43348.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
Length = 526
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 163/397 (41%), Positives = 231/397 (58%), Gaps = 31/397 (7%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+R +L+A +G+ +P+PIQAACIP+ L GRD+ G A TG+GKTAAF +P +ER+
Sbjct: 7 FGLNRRVLQAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFGIPLVERVST 66
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P+ ++ ++LTPTRELA+QV I KIA++ +R + GG S Q AL+ I
Sbjct: 67 EPR----VQAIVLTPTRELAIQVAGEIRKIAKYKRVRSVPIYGGQSIVHQIRALKQGVQI 122
Query: 123 VVATPGRMIDHL-RNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
V+ TPGR++DH+ R ++S L D+ +++LDEAD +L++GF +I ++R P RQTMLF
Sbjct: 123 VIGTPGRVLDHIHRGTLS--LSDVRMVVLDEADEMLDMGFIDDIEAILRETPSERQTMLF 180
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV----LLSL 237
SAT +V L LR DP T+ V + ++ +V + + L SL
Sbjct: 181 SATFPNEVKRL-------ALRYMRDPQH---ITVNRGEVTVPQIDQVCYKVLERNKLDSL 230
Query: 238 CSKTFTSKV---IIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 294
C + + IIF TK+ L A LHG+L+QAQR + FRK +
Sbjct: 231 CRIVDSEDIQLGIIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEI 290
Query: 295 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 354
+ L+ATDVAARGLD+ V VINY P+D SYVHR+GRT RAG+ G A+T VT + L
Sbjct: 291 ELLVATDVAARGLDVDDVTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYKL 350
Query: 355 LKAIAKRAGSKLKSR------IVAEQSITKW-SKIIE 384
LK I + K+ R VAE+ W SKI++
Sbjct: 351 LKQIEREIKQKITVREVPSLEDVAERQAEMWRSKIVD 387
>gi|326934515|ref|XP_003213334.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like
[Meleagris gallopavo]
Length = 482
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 163/383 (42%), Positives = 220/383 (57%), Gaps = 15/383 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L+ L+ +G S+PTP+QA+CIP L GRD G A TGSGKTAAF LP L+ L
Sbjct: 6 ELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQVLS 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P I L+LTPTRELA Q+ + + ++ C+VVGGL Q L P
Sbjct: 66 EDPY---GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKPH 122
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG---FSAEIHELVRLCPKRRQT 178
+V+ATPGR+ DHLR+S + L L L+LDEADRLLE G F+A++ ++ P RRQT
Sbjct: 123 VVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVPARRQT 182
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
+LFSATLT+ ++EL L++ +P A A T+ E R + E ++A L+ L
Sbjct: 183 LLFSATLTDTLNELKSLAMNRPFFWEA---ASEVRTVDELDQRYLLVPEAVKDAYLVHLI 239
Query: 239 SKTFTSK-----VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 293
+TF + +IIF+ T + L ++ + + LH + Q QR AL F+
Sbjct: 240 -QTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSSI 298
Query: 294 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 353
LIATDVAARGLDI VQ VIN+ P Y+HRVGRTARAGR G ++T VT D
Sbjct: 299 FKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDIH 358
Query: 354 LLKAIAKRAGSKLKSRIVAEQSI 376
L+ AI + KL+ V E+ +
Sbjct: 359 LVHAIEEEIKLKLQEFSVEEKLV 381
>gi|335041830|ref|ZP_08534857.1| superfamily II DNA and RNA helicase [Methylophaga
aminisulfidivorans MP]
gi|333788444|gb|EGL54326.1| superfamily II DNA and RNA helicase [Methylophaga
aminisulfidivorans MP]
Length = 433
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/371 (39%), Positives = 218/371 (58%), Gaps = 5/371 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L PL RA GY+ P+PIQA IP + G D+ +A TG+GKTA F LP L +L
Sbjct: 5 ELGLILPLQRAVTESGYTTPSPIQAKAIPAIMQGNDVMAAAQTGTGKTAGFTLPLLHKLS 64
Query: 62 Y-RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+P R R L+LTPTRELA QV I+ ++ +R +V GG+ Q +R
Sbjct: 65 EGKPARANQARALVLTPTRELAAQVEESIKTYGKYLPLRSAVVFGGVKINPQMMQMRRGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D++VATPGR++D L ++ D+L VL+LDEADR+L++GF +I +++ + P++RQT+L
Sbjct: 125 DVLVATPGRLLD-LYQQNAIRFDELEVLVLDEADRMLDMGFIHDIRKIINMLPQKRQTLL 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT + ++ EL K + P+ +S P+ + + ++ + + + + A+L L
Sbjct: 184 FSATFSNEIRELAKRLVKNPVEISVAPANTTAKKVKQWIIPVDKKQ---KPALLNQLIQD 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++FS TK A++L LKAA +HGN +Q R AL F+ + L+AT
Sbjct: 241 NNWYQVLVFSKTKHGANKLTKYLEDHGLKAAAIHGNKSQGARTRALADFKSNTIQVLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARGLDI + VIN P YVHR+GRT RAG G A++ V+ ++ LK I K
Sbjct: 301 DIAARGLDIDQLPHVINVDLPNVAADYVHRIGRTGRAGATGEAISLVSADEIDQLKDIEK 360
Query: 361 RAGSKLKSRIV 371
G+KL+ V
Sbjct: 361 LIGNKLEREYV 371
>gi|330501389|ref|YP_004378258.1| DEAD/DEAH box helicase [Pseudomonas mendocina NK-01]
gi|328915675|gb|AEB56506.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
mendocina NK-01]
Length = 632
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 151/367 (41%), Positives = 217/367 (59%), Gaps = 19/367 (5%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL- 61
L LS L+RA E+ GY++PTP+Q IP L GRD+ +A TG+GKTA FALP LERL
Sbjct: 6 LGLSEALVRAIESAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTAGFALPILERLFP 65
Query: 62 ---------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 112
+ PK+ RVL+LTPTRELA QVH + A+ + GG+ Q
Sbjct: 66 AGHPDREQRHGPKQP---RVLVLTPTRELAAQVHDSFKIYARDLKFVSACIFGGVGMNPQ 122
Query: 113 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172
AL D++VA PGR++D L SVDL + +L+LDEADR+L++GF ++ +++
Sbjct: 123 VQALAKGVDVLVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFIHDVKKVLARL 181
Query: 173 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMREVNQE 231
P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+ ++
Sbjct: 182 PAQRQNLLFSATFSKDITDLAGKLLHNPERIEVTP----PNTTVERIEQRVFRLAASHKR 237
Query: 232 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 291
A+L L ++ +V++F+ TK A+RL L AA +HGN +Q R +AL F+
Sbjct: 238 ALLAHLITQGAWEQVLVFTRTKHGANRLAEYLDKHGLPAAAIHGNKSQNARTKALADFKA 297
Query: 292 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
V L+ATD+AARGLDI + V+N+ P YVHR+GRT RAGR G A++ V ++
Sbjct: 298 SKVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357
Query: 352 RSLLKAI 358
LLK+I
Sbjct: 358 EKLLKSI 364
>gi|194878451|ref|XP_001974067.1| GG21281 [Drosophila erecta]
gi|190657254|gb|EDV54467.1| GG21281 [Drosophila erecta]
Length = 524
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 145/366 (39%), Positives = 213/366 (58%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ L +AC+ L + P+ IQ IP+AL G+D+ G A TGSGKT AFALP L LL
Sbjct: 73 DLGLNETLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALL 132
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A L+LTPTRELA Q+ E + I+CC+VVGG+ Q L P
Sbjct: 133 ENPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 189
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++DHL N +L + L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 190 IIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 249
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSK 240
SAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 250 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELSGN 309
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T + ++ L A LHG ++Q +RL AL F+ ++ LI+T
Sbjct: 310 SF----MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILIST 365
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+T V+ D L + I
Sbjct: 366 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEH 425
Query: 361 RAGSKL 366
G +L
Sbjct: 426 LLGKQL 431
>gi|423015941|ref|ZP_17006662.1| putative ATP-dependent RNA helicase [Achromobacter xylosoxidans
AXX-A]
gi|338781000|gb|EGP45396.1| putative ATP-dependent RNA helicase [Achromobacter xylosoxidans
AXX-A]
Length = 457
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 146/346 (42%), Positives = 215/346 (62%), Gaps = 12/346 (3%)
Query: 17 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL------YRPKRIPAI 70
GY+ PTPIQA IP+ + GRD+ G+A TG+GKTAAF LP L RL+ P R P +
Sbjct: 8 GYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHRLMPLANTSASPARHP-V 66
Query: 71 RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM 130
R LILTPTRELA QV+ +++ ++ T +R +V GG+ Q+ ALR +++VATPGR+
Sbjct: 67 RALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRL 126
Query: 131 IDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVD 190
+DH+ +V+L + +L+LDEADR+L++GF ++ ++RL P +RQ +LFSAT + ++
Sbjct: 127 LDHVEQK-NVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQRQGLLFSATFSNEIR 185
Query: 191 ELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFS 250
+L + L +P+ + +T+T+ + M + A ++ L +VI+FS
Sbjct: 186 KLGRSYLNQPVEIEVAARNATANTITQIAYK---MSGDQKRAAVVHLVKSRGLKQVIVFS 242
Query: 251 GTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 310
TK RL +KA +HG+ TQA R++ALE F+ ++ L+ATDVAARGLD+
Sbjct: 243 NTKIGTARLARELERDGVKAESIHGDKTQADRMKALEAFKAGELEVLVATDVAARGLDVA 302
Query: 311 GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT-FVTDNDRSLL 355
GV VINY P + YVHR+GRT RAG G A+ F D +R LL
Sbjct: 303 GVPCVINYDLPYNAEDYVHRIGRTGRAGATGEAIALFTGDEERFLL 348
>gi|332030497|gb|EGI70185.1| Putative ATP-dependent RNA helicase DDX47 [Acromyrmex echinatior]
Length = 448
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 158/415 (38%), Positives = 231/415 (55%), Gaps = 24/415 (5%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L L + C L + +PT IQ IPL L G+D+ G A TGSGKTAAFALP L+ LL
Sbjct: 22 DLGLVDILCKTCLDLKWKEPTRIQQEAIPLTLQGKDVIGLAETGSGKTAAFALPILQALL 81
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A LILTPTRELA Q+ + + ++ ++VGG+ Q L P
Sbjct: 82 ENPQRYFA---LILTPTRELAFQISEQFDALGSSIGVKTVVLVGGMDMHAQGMILEKKPH 138
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++DHL N+ +L L L++DEADR+L + F E+ +++R+ P+ R+T+LF
Sbjct: 139 IIIATPGRLVDHLENTKGFNLRQLKFLVMDEADRILNMDFEVEVDKILRVIPRERRTLLF 198
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSK 240
SAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 199 SATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGN 258
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF GT R +L A LHG +TQ +R+ AL F+ ++ LI+T
Sbjct: 259 SF----MIFCGTCNNTVRTALLLRNLGFTAVPLHGQMTQNKRIAALTKFKAKNRSILIST 314
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++TFVT D L + I
Sbjct: 315 DVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRI-- 372
Query: 361 RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAEN 415
EQ I+K + E++V +L +ER R +M+ E+
Sbjct: 373 ------------EQLISKQLPLFPTEEEEV--MLLQERVSEAQRIVKMDMKNMED 413
>gi|443726900|gb|ELU13896.1| hypothetical protein CAPTEDRAFT_175937 [Capitella teleta]
Length = 453
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 143/365 (39%), Positives = 210/365 (57%), Gaps = 8/365 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L ++ L ACE LG+ P+ IQ IP+AL G D+ G A TGSGKT +FALP L+ LL
Sbjct: 32 LGVTDVLCEACEILGWKAPSKIQKESIPVALQGSDVIGLAETGSGKTGSFALPVLQTLLD 91
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P+R+ L+LTPTRELA Q+ E + ++C ++VGG+ Q L P I
Sbjct: 92 NPQRM---YCLVLTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMMTQSMVLAKKPHI 148
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
++ATPGR++DHL N+ +L L L++DEADR+L + F E+++++++ PK R+T L+S
Sbjct: 149 IIATPGRLVDHLENTKGFNLRALKYLVMDEADRILNMDFEQEVNKILKVIPKERKTYLYS 208
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSKT 241
AT+T V +L + L P+++ + L + I + ++V +L L +
Sbjct: 209 ATMTSKVAKLQRACLKNPVKVEVSTKYQTVDKLQQSYCFIPAKFKDVYLVYILNELAGNS 268
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
F I+F T R+ ++ + A LHG + Q +RL AL F+ + LIATD
Sbjct: 269 F----IVFCSTCANTQRVALMLRNLGMTAIPLHGQMNQTKRLGALNKFKSKSRSILIATD 324
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V V+N+ P Y+HRVGRTARAG+ G A+T VT D L + I +
Sbjct: 325 VASRGLDIPHVNVVVNFDIPTHSKDYIHRVGRTARAGKSGKAITLVTQYDVELYQRIEQL 384
Query: 362 AGSKL 366
G KL
Sbjct: 385 IGKKL 389
>gi|182412765|ref|YP_001817831.1| DEAD/DEAH box helicase [Opitutus terrae PB90-1]
gi|177839979|gb|ACB74231.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1]
Length = 409
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 149/365 (40%), Positives = 217/365 (59%), Gaps = 8/365 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+LR A GY+ PTPIQ IP+ L G D+ GSA TG+GKTAAFALP L RL
Sbjct: 6 LQLSAPVLRGVVAAGYTDPTPIQLRAIPVVLGGGDLIGSAQTGTGKTAAFALPILTRLGA 65
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
R P RVL+L PTRELA QV + A+FTD+R V GG+ +Q T L+ D+
Sbjct: 66 HAARAP--RVLVLEPTRELAAQVETAFRDFARFTDLRTVAVFGGVGYGLQRTELKRGVDV 123
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+VATPGR++D+L + +++L + +L+LDE DR+L++GF + ++++ CP++RQT+ FS
Sbjct: 124 IVATPGRLMDYLHDR-TINLQGVEILVLDEVDRMLDMGFLPVVKDIIQRCPRQRQTLFFS 182
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL-SLCSKT 241
AT+ ++ + +L P R+ + ++ E V +Q+ LL +L ++T
Sbjct: 183 ATVPPEIQAVASFALRNPTRVEVGVN----RSVNESVKHALYPVAADQKFELLEALLART 238
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
V++FS TK A ++ A A LH N +Q QR+EAL F+ + ++ATD
Sbjct: 239 DFDSVLVFSRTKHGADKIARKLKAANHSVAVLHANRSQNQRIEALAGFKSGKYEIMVATD 298
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARG+D+ GV VINY P YVHR+GRT RA G A T VT + ++ I +
Sbjct: 299 IAARGIDVAGVSHVINYDVPEKPEDYVHRIGRTGRAQAVGDAFTLVTPENAHDVRDIERF 358
Query: 362 AGSKL 366
G K+
Sbjct: 359 IGQKI 363
>gi|71736956|ref|YP_273717.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|289647906|ref|ZP_06479249.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aesculi
str. 2250]
gi|422584568|ref|ZP_16659674.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|422598398|ref|ZP_16672660.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|422680932|ref|ZP_16739203.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|71557509|gb|AAZ36720.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|298157456|gb|EFH98539.1| ATP-dependent RNA helicase SrmB [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|330869381|gb|EGH04090.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330988677|gb|EGH86780.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331010277|gb|EGH90333.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
Length = 445
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 223/376 (59%), Gaps = 10/376 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 EFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K IR +IL PTRELA Q +E+ +QFT ++ L+ GG K+Q LR +PD
Sbjct: 64 GPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGR+++ L N+ ++DL + VL+LDEADR+L++GFS ++ L C R QTMLF
Sbjct: 124 ILIGTPGRLLEQL-NAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E+I L P L + ++ S +++ V++E VL L +
Sbjct: 183 SATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITAD--HNVHKEQVLNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFG-LAAL--KAAELHGNLTQAQRLEALELFRKQHVDFL 297
K IIF+ TK A R L+G L AL KA LHG+ Q R A++ ++ +
Sbjct: 241 ETYQKAIIFTNTKAMADR---LYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIM 297
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATDVAARGLD+ G+ VIN+ PR YVHRVGRT RAG +G A++ + D +L+ +
Sbjct: 298 VATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSS 357
Query: 358 IAKRAGSKLKSRIVAE 373
+ + + R++ E
Sbjct: 358 VERYLKQSFERRVIKE 373
>gi|47217410|emb|CAG00770.1| unnamed protein product [Tetraodon nigroviridis]
Length = 456
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 158/384 (41%), Positives = 220/384 (57%), Gaps = 15/384 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS L++ C+ LG KPTP+Q C+P L GRD G A TGSGKTAAF LP L++L
Sbjct: 7 LGLSDWLVKQCKQLGIHKPTPVQENCVPAILQGRDCMGCAKTGSGKTAAFVLPVLQKLSE 66
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P I L+LTPTRELA Q+ + + +R C+VVGG+ Q + L + P +
Sbjct: 67 DPY---GIFCLVLTPTRELAYQIAEQFRVLGKPLGLRDCIVVGGMDMVSQASELSNQPHV 123
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG---FSAEIHELVRLCPKRRQTM 179
VVATPGR+ DH+R+S + + + LI+DEADRLLE G F+ ++ ++ P +RQT+
Sbjct: 124 VVATPGRLADHIRSSSTFSMSKIQFLIMDEADRLLEQGCTDFTKDLETIMPALPAKRQTL 183
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
LFSATLT+ + EL +++ KP + + T+ E R E ++A L+ L
Sbjct: 184 LFSATLTDTLQELKNIAMNKPFFWESKSETR---TVDELDQRYILTPEKVKDAYLVHLI- 239
Query: 240 KTFTSK-----VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 294
+TFT + +IIF+ T + L ++ LH + Q QR L F+
Sbjct: 240 QTFTDQHDDWSIIIFTNTCKNCQILTMMLQQFNFPTISLHSMMKQKQRFANLAKFKASVY 299
Query: 295 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 354
LIATDVAARGLDI VQ VIN+ P Y+HRVGRTARAGR G ++T VT D L
Sbjct: 300 KILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIHL 359
Query: 355 LKAIAKRAGSKLKSRIVAEQSITK 378
+ +I ++ +KLK V E+ + K
Sbjct: 360 VHSIEEQIQTKLKEFPVEEKEVLK 383
>gi|345022779|ref|ZP_08786392.1| ATP-dependent RNA helicase [Ornithinibacillus scapharcae TW25]
Length = 490
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 149/396 (37%), Positives = 231/396 (58%), Gaps = 20/396 (5%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELN+S P++++ E +G+ + TPIQ+ IPLAL G D+ G A TG+GKTAAF +P LE++
Sbjct: 6 ELNISSPIMKSLEKMGFEEATPIQSETIPLALAGHDVIGQAQTGTGKTAAFGIPMLEKVD 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+++ L++ PTRELA+QV + ++ +F +R V GG Q +L+ P
Sbjct: 66 TSARKVQG---LVVAPTRELAIQVAEELNRLGRFKGVRVLPVYGGAPMDRQIRSLKDGPQ 122
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IVVATPGR++DH R ++ D + ++LDEAD +L +GF +I E+++ P RQT+LF
Sbjct: 123 IVVATPGRLLDHFRRR-TIRADIVNTVVLDEADEMLNMGFIDDIREILKQVPSERQTLLF 181
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ +++ ++ + P + + ++ V I + + LL + +
Sbjct: 182 SATMPKEIRDIATNLMNSPKEVKVKAKEMTVENIDQQFVEIPEKYKFDTLTNLLDMQNPE 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAA--LKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
I+FS TK+ +I GL A ++ +HG+LTQ +R+ L F+ VD L+A
Sbjct: 242 L---AIVFSRTKKRVD--EITEGLQARGFRSEGIHGDLTQGKRMSVLNKFKNGRVDVLVA 296
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVAARGLDI GV V N+ P+D SYVHR+GRT RAGR G A++F+T + + L+ I
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGRTGEAISFITPREMAHLRLIE 356
Query: 360 KRAGSKLKSRI--------VAEQSITKWSKIIEQME 387
K SK+K + + +Q IT KI+ +E
Sbjct: 357 KVTKSKMKRMVPPTNKEARIGQQQIT-VEKILATIE 391
>gi|416015105|ref|ZP_11562765.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
str. B076]
gi|416028719|ref|ZP_11571636.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
str. race 4]
gi|422404416|ref|ZP_16481469.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
str. race 4]
gi|320325391|gb|EFW81456.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
str. B076]
gi|320327468|gb|EFW83481.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330877269|gb|EGH11418.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 445
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 223/376 (59%), Gaps = 10/376 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 EFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K IR +IL PTRELA Q +E+ +QFT ++ L+ GG K+Q LR +PD
Sbjct: 64 GPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGR+++ L N+ ++DL + VL+LDEADR+L++GFS ++ L C R QTMLF
Sbjct: 124 ILIGTPGRLLEQL-NAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E+I L P L + ++ S +++ V++E VL L +
Sbjct: 183 SATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITAD--HNVHKEQVLNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFG-LAAL--KAAELHGNLTQAQRLEALELFRKQHVDFL 297
K IIF+ TK A R L+G L AL KA LHG+ Q R A++ ++ +
Sbjct: 241 ETYQKAIIFTNTKAMADR---LYGRLVALEYKAFVLHGDKYQKDRKAAIDRLKQGGAKIM 297
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATDVAARGLD+ G+ VIN+ PR YVHRVGRT RAG +G A++ + D +L+ +
Sbjct: 298 VATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSS 357
Query: 358 IAKRAGSKLKSRIVAE 373
+ + + R++ E
Sbjct: 358 VERYLKQSFERRVIKE 373
>gi|398964629|ref|ZP_10680406.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM30]
gi|398148015|gb|EJM36703.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM30]
Length = 446
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 155/359 (43%), Positives = 216/359 (60%), Gaps = 8/359 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L PLLR+ E LGY PTP+QA IP L GRD+ +A TG+GKTA FALP L+ L
Sbjct: 6 LGLIEPLLRSLEKLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQLLAM 65
Query: 63 RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
++ A R LIL PTRELA QVH + + A+ +R V GG+S Q LR
Sbjct: 66 EGPKVAANSARALILVPTRELAEQVHESVRQYAENLPLRTYAVYGGVSINPQMMKLRGGV 125
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D++VATPGR+ID LR + ++ LD L L+LDEADR+L+LGFS E+ + R+ PK+RQT+L
Sbjct: 126 DVLVATPGRLIDLLRQN-ALKLDQLQTLVLDEADRMLDLGFSEELANIYRMLPKKRQTLL 184
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++D+ L L PL + P +T+ + VV + + R + + + L K
Sbjct: 185 FSATFSDDIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVTVDKKR---KPELFVHLMRK 241
Query: 241 TFTSKVIIFSGTKQAAHRL-KILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+V++F+ T+ L + L GL + A +HG+ QA R AL+ F+ V L+A
Sbjct: 242 NKWKQVLVFAKTRNGVDALVEKLQGLG-VNADGIHGDKPQATRQRALDRFKLSEVQILVA 300
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
TDVAARGLDI + V+N+ P Y+HR+GRT RAG G A++ V ++ +LL AI
Sbjct: 301 TDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGATGEAISLVCADEVNLLSAI 359
>gi|448090292|ref|XP_004197032.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
gi|448094692|ref|XP_004198063.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
gi|359378454|emb|CCE84713.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
gi|359379485|emb|CCE83682.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
Length = 500
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 145/365 (39%), Positives = 212/365 (58%), Gaps = 6/365 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNL LL + ++KPTPIQA IP AL G+DI G A TGSGKTAAFA+P L+ L
Sbjct: 93 ELNLIPELLETINEMKFTKPTPIQAEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLW 152
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ P L+L PTRELA Q+ + + +R +VGG+ Q L P
Sbjct: 153 --DAQTPYFG-LVLAPTRELAYQIKETFDALGSSMGLRTVCIVGGMDMMDQARDLMRRPH 209
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL ++ L +L L++DEADRLL++ F + +++++ P +R T LF
Sbjct: 210 ILVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPTQRTTYLF 269
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T V++L + SL P++++ + L + ++ + + + L+ L ++
Sbjct: 270 SATMTSKVEKLQRASLHNPVKVAVSTKYQTADNLVQSMMLV---SDGYKNTYLIHLLNEF 326
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+I+F+ T + R +L + A LHG L+Q+QRL +L F+ + L+ATD
Sbjct: 327 VGKSIIVFTRTCAHSQRTSLLARILGFSAVPLHGQLSQSQRLGSLNKFKSGKSNILVATD 386
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V VINY P D +Y+HRVGRTARAG+ G +++ VT D L I
Sbjct: 387 VAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLELYLRIENV 446
Query: 362 AGSKL 366
G KL
Sbjct: 447 LGKKL 451
>gi|424902637|ref|ZP_18326153.1| ATP-dependent RNA helicase 2 [Burkholderia thailandensis MSMB43]
gi|390933012|gb|EIP90412.1| ATP-dependent RNA helicase 2 [Burkholderia thailandensis MSMB43]
Length = 482
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 146/365 (40%), Positives = 227/365 (62%), Gaps = 11/365 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L+ +L+A GY+ PTPIQA IP+ L+GRD+ G+A TG+GKTA+F+LP ++RLL
Sbjct: 15 QFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLL 74
Query: 62 YR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
+ P R P +R LILTPTRELA QV + + A+ T +R +V GG+ Q
Sbjct: 75 PQANTSASPARHP-VRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAE 133
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR +I++ATPGR++DH++ + +L + +L+LDEADR+L++GF ++ ++ L PK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQK-TANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQT+LFSAT + ++ +L L P + S ST+T+ V + E +++A ++
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRDPQTIEVARSNAAASTVTQIVYDVA---EGDKQAAVV 249
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
L +VI+F +K A RL + AA +HG+ +Q++R++AL+ F++ ++
Sbjct: 250 KLIRDRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIE 309
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARGLDI+ + VIN+ P + YVHR+GRT RAG G A++ + N+R L
Sbjct: 310 ALVATDVAARGLDIVELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369
Query: 356 KAIAK 360
I K
Sbjct: 370 ADIEK 374
>gi|78485124|ref|YP_391049.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
gi|78363410|gb|ABB41375.1| ATP-dependent RNA helicase [Thiomicrospira crunogena XCL-2]
Length = 445
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 148/357 (41%), Positives = 212/357 (59%), Gaps = 5/357 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL- 61
L LS+P+L A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LERL
Sbjct: 6 LGLSKPILDAVTQQGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILERLSK 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P R LILTPTRELA QV +E + ++ +V GG+ Q LR D
Sbjct: 66 GKPAGPNQARALILTPTRELAAQVSDSVETYGKQLSLKSTVVFGGVKINPQMMRLRKGVD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++D L N ++ D L +L+LDEADR+L++GF +I +++ PK RQ +LF
Sbjct: 126 ILVATPGRLLD-LFNQNAIKFDQLEILVLDEADRMLDMGFIHDIKRILKALPKNRQNLLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT + ++ +L K + P+ +S P +T+T+ + + + R+ A+L L +
Sbjct: 185 SATFSNEIRQLAKGLVNNPVEISVTPRNTTATTVTQWIYPVDKGRKA---ALLTKLIKEN 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
S+V+IFS TK A+RL +KAA +HGN +Q R +AL F+ V L+ATD
Sbjct: 242 DWSQVLIFSRTKHGANRLTKQLEGKGIKAAAIHGNKSQGARTKALASFKDGTVQALVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
+AARG+DI + V+N+ P YVHR+GRT RAG G AV+ V+ ++ L I
Sbjct: 302 IAARGIDIDQLPHVVNFDLPNVAEDYVHRIGRTGRAGAVGEAVSLVSADEVKELAGI 358
>gi|359443658|ref|ZP_09233492.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20429]
gi|358034494|dbj|GAA69741.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20429]
Length = 464
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/362 (41%), Positives = 214/362 (59%), Gaps = 5/362 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS+ L+ A GY PTPIQA IP + RD+ +A TG+GKTA F LP +ERL
Sbjct: 6 LGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIERLSS 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
PK + +R LILTPTRELA+QV +E+ A+ +D+ +V GG+ Q LR D
Sbjct: 66 GPKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRLRKGVD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR+ID L N +V D + VL+LDEADR+L++GF +I L+ P +RQ ++F
Sbjct: 126 ILVATPGRLID-LHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQNLMF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++++ L K + P+ +S ++T+ V + + R+ A+L L
Sbjct: 185 SATFSDEIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKTRKT---ALLSHLIRTN 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++FS TK A+RL + A +HGN +Q R++AL+ F+ V L+ATD
Sbjct: 242 DWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+ ARGLDI+ + V+NY P YVHR+GRT RAG G+A++FVT D L I +
Sbjct: 302 IVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTTEDAVDLYGIERF 361
Query: 362 AG 363
G
Sbjct: 362 IG 363
>gi|359435528|ref|ZP_09225727.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20652]
gi|357917829|dbj|GAA61976.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20652]
Length = 464
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/362 (41%), Positives = 214/362 (59%), Gaps = 5/362 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS+ L+ A GY PTPIQA IP + RD+ +A TG+GKTA F LP +ERL
Sbjct: 6 LGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIERLSS 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
PK + +R LILTPTRELA+QV +E+ A+ +D+ +V GG+ Q LR D
Sbjct: 66 GPKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRLRKGVD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR+ID L N +V D + VL+LDEADR+L++GF +I L+ P +RQ ++F
Sbjct: 126 ILVATPGRLID-LHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQNLMF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++++ L K + P+ +S ++T+ V + + R+ A+L L
Sbjct: 185 SATFSDEIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKTRKT---ALLSHLIRTN 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++FS TK A+RL + A +HGN +Q R++AL+ F+ V L+ATD
Sbjct: 242 DWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+ ARGLDI+ + V+NY P YVHR+GRT RAG G+A++FVT D L I +
Sbjct: 302 IVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTTEDAVDLYGIERF 361
Query: 362 AG 363
G
Sbjct: 362 IG 363
>gi|303231880|ref|ZP_07318591.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
ACS-049-V-Sch6]
gi|302513487|gb|EFL55518.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
ACS-049-V-Sch6]
Length = 523
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 146/368 (39%), Positives = 220/368 (59%), Gaps = 7/368 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L +S P+LRA +G+ +PTPIQ IP+A++G+D+ G A TG+GKTAAF LP LER+
Sbjct: 7 QLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVD 66
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + +V+IL+PTRELA+QV + K+AQ+TDI + GG Q AL+ P
Sbjct: 67 GSNRHV---QVVILSPTRELAIQVAEELNKMAQYTDITALPIYGGQDINRQFRALKKNPQ 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DH+ S+ +D+ +++LDEAD +L +GF +I++++ P+ QT+LF
Sbjct: 124 IIVATPGRLMDHMDRG-SIKFEDVKIVVLDEADEMLNMGFVDDINKILGAIPEDHQTLLF 182
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ + + EL + LT+P + P+ + + + ++ ++ + VL L
Sbjct: 183 SATMPKTIRELAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFD---VLCRLFDLQ 239
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
IIF+ TK+ + A +HG+L+Q +R + FR+ +D L+ATD
Sbjct: 240 APELAIIFTRTKRRVDEVTEALKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATD 299
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV V NY P+D SY HRVGRT RAG+ G A TFV + L AI +
Sbjct: 300 VAARGLDISGVSHVYNYDLPQDPESYTHRVGRTGRAGKAGEAYTFVIPREIEHLHAIERL 359
Query: 362 AGSKLKSR 369
K+ R
Sbjct: 360 TKRKIAKR 367
>gi|239624536|ref|ZP_04667567.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
bacterium 1_7_47_FAA]
gi|239520922|gb|EEQ60788.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
bacterium 1_7_47FAA]
Length = 518
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 147/369 (39%), Positives = 221/369 (59%), Gaps = 7/369 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL LS LL+A + GY KP+PIQ IP L G+D+ G A TG+GKTAAFALP ++ L+
Sbjct: 5 ELQLSPLLLKALDQKGYIKPSPIQEQAIPYVLNGQDLLGCAQTGTGKTAAFALPIIQNLM 64
Query: 62 YRPK---RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
RPK + +R LILTPTRELA+Q+H IE+ T I ++ GG+S K Q +LR
Sbjct: 65 ERPKNRQKKKPVRALILTPTRELALQIHENIEEYGAGTPINSAVIFGGVSAKPQIQSLRR 124
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
DI+VATPGR++D L +DL + + +LDEADR+L++GF ++ ++ L PK+RQT
Sbjct: 125 GIDILVATPGRLLD-LIGQHEIDLSFVEIFVLDEADRMLDMGFIHDVKRVITLLPKKRQT 183
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
+LFSAT+ +++ L L P+++ P + ST+ + + + N+ +L+ L
Sbjct: 184 LLFSATMPDEIQALAAKLLHNPVKVEVTPVS---STVDLIETSLYYVDKANKWPLLVHLL 240
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
S ++F+ TK A R + + AA +HG+ +Q R AL F+ + L+
Sbjct: 241 EHEDVSSTLVFTRTKHGADRGAKYLNKSGITAAAIHGDKSQGARQTALSNFKSGRLRVLV 300
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+AARG+DI + VIN+ P +YVHR+GRT RAG G A++F +++ +K I
Sbjct: 301 ATDIAARGIDIEELSCVINFDLPNVPETYVHRIGRTGRAGLGGRAISFSDIEEKAYVKDI 360
Query: 359 AKRAGSKLK 367
K G ++
Sbjct: 361 EKLTGKTIQ 369
>gi|254431629|ref|ZP_05045332.1| DNA and RNA helicase [Cyanobium sp. PCC 7001]
gi|197626082|gb|EDY38641.1| DNA and RNA helicase [Cyanobium sp. PCC 7001]
Length = 437
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 152/370 (41%), Positives = 219/370 (59%), Gaps = 5/370 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L P+L+A GY+ P+PIQ CIP L G D+ +A TG+GKTA F LP LERL +
Sbjct: 8 LGLGLPILKAVAEKGYTTPSPIQLECIPTVLAGHDVMAAAQTGTGKTAGFTLPMLERLRH 67
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P R +R L+LTPTRELA QV + ++ D+R +V GG+ Q LR+ D
Sbjct: 68 GPHARGGVVRALVLTPTRELAAQVAENVAAYGRYLDLRSDVVFGGVKINPQINRLRAGAD 127
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++D L+ ++ LD + VL+LDEADR+L++GF +I +L+ L P +RQ +LF
Sbjct: 128 ILVATPGRLLD-LQQQRAIRLDRVEVLVLDEADRMLDMGFIRDIQKLLALLPPKRQNLLF 186
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT + + +L L +P++L A P + T+ E ++ M + +L L +
Sbjct: 187 SATFSPSIRKLAHGLLHQPVQLQATPENQAAPTV-EHLLHPCDM--ARKPELLTHLIASN 243
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++FS TK A+R+ A L+AA +HGN +Q R AL F+ V L+ATD
Sbjct: 244 DWQQVLVFSRTKHGANRMADRLCAAGLEAAAIHGNKSQGARTRALAGFKTGEVRVLVATD 303
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARG+DI + V+N P YVHR+GRT RAG G+A++ V + LL AI +
Sbjct: 304 LAARGIDIHQLPHVVNLDLPNQAEDYVHRIGRTGRAGHPGHAISLVAAEEHELLGAIERL 363
Query: 362 AGSKLKSRIV 371
G+ L S V
Sbjct: 364 IGTSLPSETV 373
>gi|359456093|ref|ZP_09245284.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20495]
gi|358046842|dbj|GAA81533.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20495]
Length = 464
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/362 (41%), Positives = 214/362 (59%), Gaps = 5/362 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS+ L+ A GY PTPIQA IP + RD+ +A TG+GKTA F LP +ERL
Sbjct: 6 LGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIERLSS 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
PK + +R LILTPTRELA+QV +E+ A+ +D+ +V GG+ Q LR D
Sbjct: 66 GPKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRLRKGVD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR+ID L N +V D + VL+LDEADR+L++GF +I L+ P +RQ ++F
Sbjct: 126 ILVATPGRLID-LHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQNLMF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++++ L K + P+ +S ++T+ V + + R+ A+L L
Sbjct: 185 SATFSDEIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKTRKT---ALLSHLIRTN 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++FS TK A+RL + A +HGN +Q R++AL+ F+ V L+ATD
Sbjct: 242 DWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+ ARGLDI+ + V+NY P YVHR+GRT RAG G+A++FVT D L I +
Sbjct: 302 IVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTTEDAVDLYGIERF 361
Query: 362 AG 363
G
Sbjct: 362 IG 363
>gi|66047019|ref|YP_236860.1| helicase [Pseudomonas syringae pv. syringae B728a]
gi|422673345|ref|ZP_16732705.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aceris
str. M302273]
gi|424068921|ref|ZP_17806369.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
gi|440722920|ref|ZP_20903290.1| helicase [Pseudomonas syringae BRIP34876]
gi|440727353|ref|ZP_20907589.1| helicase [Pseudomonas syringae BRIP34881]
gi|63257726|gb|AAY38822.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Pseudomonas syringae pv. syringae B728a]
gi|330971079|gb|EGH71145.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aceris
str. M302273]
gi|407996030|gb|EKG36527.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
gi|440360496|gb|ELP97768.1| helicase [Pseudomonas syringae BRIP34876]
gi|440364118|gb|ELQ01258.1| helicase [Pseudomonas syringae BRIP34881]
Length = 445
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 223/376 (59%), Gaps = 10/376 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 EFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K IR +IL PTRELA Q +E+ +QFT ++ L+ GG K+Q LR +PD
Sbjct: 64 GPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGR+++ L N+ ++DL + VL+LDEADR+L++GFS ++ L C R QTMLF
Sbjct: 124 ILIGTPGRLLEQL-NAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E+I L P L + ++ S +++ V++E VL L +
Sbjct: 183 SATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITAD--HNVHKEQVLNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFG-LAAL--KAAELHGNLTQAQRLEALELFRKQHVDFL 297
K IIF+ TK A R L+G L AL KA LHG+ Q R A++ ++ +
Sbjct: 241 ETYQKAIIFTNTKAMADR---LYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIM 297
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATDVAARGLD+ G+ VIN+ PR YVHRVGRT RAG +G A++ + D +L+ +
Sbjct: 298 VATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSS 357
Query: 358 IAKRAGSKLKSRIVAE 373
+ + + R++ E
Sbjct: 358 VERYLKQSFERRVIKE 373
>gi|381188780|ref|ZP_09896340.1| ATP-dependent RNA helicase RhlE [Flavobacterium frigoris PS1]
gi|379649418|gb|EIA07993.1| ATP-dependent RNA helicase RhlE [Flavobacterium frigoris PS1]
Length = 419
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 217/362 (59%), Gaps = 7/362 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT---LE 58
EL+LS+ + RA GY+ PTPIQ IPL L G+D+ G A TG+GKTAAFA+P L
Sbjct: 5 ELSLSKSIQRAVYEQGYTNPTPIQEQSIPLVLAGKDLIGCAQTGTGKTAAFAIPIIHQLH 64
Query: 59 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
R++ K+ IR L++TPTRELAVQ+ + ++T++ + GG+S Q AL++
Sbjct: 65 RIVGSSKKAKQIRALVVTPTRELAVQIGQSFDTYGKYTNLTQLTIFGGVSQNPQVDALKN 124
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
DI++ATPGR++D L +DLD L L+LDEAD++L++GF ++ ++V+L PK RQT
Sbjct: 125 GVDILIATPGRLLD-LHKQGFIDLDHLHCLVLDEADQMLDMGFVNDVKKIVKLTPKNRQT 183
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
+ FSAT+ + EL ++ LTKP ++ P + + + V + + + N +L +L
Sbjct: 184 LFFSATMPIAIRELAEMFLTKPETVTVSPVSSTAENVEQRVYFVEKTEKRN---LLYNLI 240
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+ V++FS TK A + + A +HG+ +Q R LE F+ + V L+
Sbjct: 241 KNENLTDVLVFSRTKHGADNVVKALRKNNIAAEAIHGDKSQNARQRVLEAFKNKEVGVLV 300
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+AARG+DI + VIN+ P +YVHR+GRT RAG G A++F + ++ K I
Sbjct: 301 ATDIAARGIDIDQLPYVINFDLPNIPETYVHRIGRTGRAGNGGVAISFCSKDEHGYWKDI 360
Query: 359 AK 360
K
Sbjct: 361 QK 362
>gi|302188635|ref|ZP_07265308.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. syringae
642]
gi|443642767|ref|ZP_21126617.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. syringae
B64]
gi|443282784|gb|ELS41789.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. syringae
B64]
Length = 445
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 223/376 (59%), Gaps = 10/376 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 EFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K IR +IL PTRELA Q +E+ +QFT ++ L+ GG K+Q LR +PD
Sbjct: 64 GPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGR+++ L N+ ++DL + VL+LDEADR+L++GFS ++ L C R QTMLF
Sbjct: 124 ILIGTPGRLLEQL-NAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E+I L P L + ++ S +++ V++E VL L +
Sbjct: 183 SATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITAD--HNVHKEQVLNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFG-LAAL--KAAELHGNLTQAQRLEALELFRKQHVDFL 297
K IIF+ TK A R L+G L AL KA LHG+ Q R A++ ++ +
Sbjct: 241 ETYKKAIIFTNTKAMADR---LYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIM 297
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATDVAARGLD+ G+ VIN+ PR YVHRVGRT RAG +G A++ + D +L+ +
Sbjct: 298 VATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSS 357
Query: 358 IAKRAGSKLKSRIVAE 373
+ + + R++ E
Sbjct: 358 VERYLKQSFERRVIKE 373
>gi|392536161|ref|ZP_10283298.1| ATP-dependent RNA helicase [Pseudoalteromonas arctica A 37-1-2]
Length = 464
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/362 (41%), Positives = 214/362 (59%), Gaps = 5/362 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS+ L+ A GY PTPIQA IP + RD+ +A TG+GKTA F LP +ERL
Sbjct: 6 LGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIERLSS 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
PK + +R LILTPTRELA+QV +E+ A+ +D+ +V GG+ Q LR D
Sbjct: 66 GPKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRLRKGVD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR+ID L N +V D + VL+LDEADR+L++GF +I L+ P +RQ ++F
Sbjct: 126 ILVATPGRLID-LHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQNLMF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++++ L K + P+ +S ++T+ V + + R+ A+L L
Sbjct: 185 SATFSDEIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKTRKT---ALLSHLIRTN 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++FS TK A+RL + A +HGN +Q R++AL+ F+ V L+ATD
Sbjct: 242 DWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+ ARGLDI+ + V+NY P YVHR+GRT RAG G+A++FVT D L I +
Sbjct: 302 IVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTTEDAVDLYGIERF 361
Query: 362 AG 363
G
Sbjct: 362 IG 363
>gi|422616661|ref|ZP_16685366.1| helicase [Pseudomonas syringae pv. japonica str. M301072]
gi|330896875|gb|EGH28465.1| helicase [Pseudomonas syringae pv. japonica str. M301072]
Length = 445
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 223/376 (59%), Gaps = 10/376 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 EFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K IR +IL PTRELA Q +E+ +QFT ++ L+ GG K+Q LR +PD
Sbjct: 64 GPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGR+++ L N+ ++DL + VL+LDEADR+L++GFS ++ L C R QTMLF
Sbjct: 124 ILIGTPGRLLEQL-NAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGGCAGREQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E+I L P L + ++ S +++ V++E VL L +
Sbjct: 183 SATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITAD--HNVHKEQVLNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFG-LAAL--KAAELHGNLTQAQRLEALELFRKQHVDFL 297
K IIF+ TK A R L+G L AL KA LHG+ Q R A++ ++ +
Sbjct: 241 ETYQKAIIFTNTKAMADR---LYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIM 297
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATDVAARGLD+ G+ VIN+ PR YVHRVGRT RAG +G A++ + D +L+ +
Sbjct: 298 VATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSS 357
Query: 358 IAKRAGSKLKSRIVAE 373
+ + + R++ E
Sbjct: 358 VERYLKQSFERRVIKE 373
>gi|294055756|ref|YP_003549414.1| DEAD/DEAH box helicase [Coraliomargarita akajimensis DSM 45221]
gi|293615089|gb|ADE55244.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
DSM 45221]
Length = 406
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 217/360 (60%), Gaps = 6/360 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ +L A E GY++PTPIQA IP + GRD+ GSA TG+GKTAAFALP L RL
Sbjct: 6 DLGLAPAILSAVEEAGYTEPTPIQAGAIPHIIDGRDVIGSAQTGTGKTAAFALPALHRL- 64
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ ++ A R L+L PTRELA QV EK + ++C L+ GG+ Q L + D
Sbjct: 65 GKHQKGAAPRCLVLGPTRELAAQVKEQFEKYGKDAQLKCALIHGGVGYGRQRQELEAGAD 124
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR-RQTML 180
+V+ATPGR+IDH++ + DL ++ +LILDE DR+L++GF ++ ++++ C K+ RQT+L
Sbjct: 125 VVIATPGRLIDHVQQR-TADLRNVDLLILDEVDRMLDMGFIDDVKKIIKFCSKQGRQTLL 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT++E++ LI SL P+ ++ T+ EV + M++ + +L++L
Sbjct: 184 FSATVSEEIKRLIARSLKDPVEVAIAVKITPAETVKHEVYPVGAMQKFD---LLVALIES 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+IIF K A R+ K A +H +L Q R AL+ F+ ++ L+AT
Sbjct: 241 MEVDSMIIFCRMKIGADRITRWLQQHKYKVAAMHADLNQKARNRALQDFKDGNIKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+A+RGLDI V VINY P YVHR+GRT RA REG A T + ++ S L AI K
Sbjct: 301 DIASRGLDIANVTHVINYDVPEHPEDYVHRIGRTGRAQREGDAATILAPDEESKLDAIEK 360
>gi|301384847|ref|ZP_07233265.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
Max13]
gi|302059212|ref|ZP_07250753.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
K40]
gi|302130851|ref|ZP_07256841.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|422297602|ref|ZP_16385235.1| ATP-dependent RNA helicase SrmB [Pseudomonas avellanae BPIC 631]
gi|422658705|ref|ZP_16721137.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|331017330|gb|EGH97386.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|407990944|gb|EKG32917.1| ATP-dependent RNA helicase SrmB [Pseudomonas avellanae BPIC 631]
Length = 445
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 223/376 (59%), Gaps = 10/376 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 EFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K IR +IL PTRELA Q +E+ +QFT ++ L+ GG K+Q LR +PD
Sbjct: 64 GPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGR+++ L N+ ++DL + VL+LDEADR+L++GFS ++ L C R QTMLF
Sbjct: 124 ILIGTPGRLLEQL-NAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E+I L P L + ++ S +++ V++E VL L +
Sbjct: 183 SATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITAD--HNVHKEQVLNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFG-LAAL--KAAELHGNLTQAQRLEALELFRKQHVDFL 297
K IIF+ TK A R L+G L AL KA LHG+ Q R A++ ++ +
Sbjct: 241 ETYQKAIIFTNTKAMADR---LYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIM 297
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATDVAARGLD+ G+ VIN+ PR YVHRVGRT RAG +G A++ + D +L+ +
Sbjct: 298 VATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSS 357
Query: 358 IAKRAGSKLKSRIVAE 373
+ + + R++ E
Sbjct: 358 VERYLKQSFERRVIKE 373
>gi|160883549|ref|ZP_02064552.1| hypothetical protein BACOVA_01521 [Bacteroides ovatus ATCC 8483]
gi|237722794|ref|ZP_04553275.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|293371813|ref|ZP_06618223.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CMC 3f]
gi|299147643|ref|ZP_07040707.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_23]
gi|336416998|ref|ZP_08597329.1| hypothetical protein HMPREF1017_04437 [Bacteroides ovatus
3_8_47FAA]
gi|423291591|ref|ZP_17270438.1| hypothetical protein HMPREF1069_05481 [Bacteroides ovatus
CL02T12C04]
gi|156110962|gb|EDO12707.1| DEAD/DEAH box helicase [Bacteroides ovatus ATCC 8483]
gi|229447316|gb|EEO53107.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|292633265|gb|EFF51836.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CMC 3f]
gi|298514430|gb|EFI38315.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_23]
gi|335937042|gb|EGM98952.1| hypothetical protein HMPREF1017_04437 [Bacteroides ovatus
3_8_47FAA]
gi|392662714|gb|EIY56270.1| hypothetical protein HMPREF1069_05481 [Bacteroides ovatus
CL02T12C04]
Length = 374
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 148/368 (40%), Positives = 221/368 (60%), Gaps = 6/368 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELN++ P+L+A E GY+ PTPIQ IP AL RDI G A TG+GKTA+FA+P ++ L
Sbjct: 5 ELNITEPILKAIEEKGYAVPTPIQGEAIPAALAKRDILGCAQTGTGKTASFAIPIIQHLQ 64
Query: 62 YRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
+ + I+ LILTPTRELA+Q+ I A++T +R ++ GG++ + Q L
Sbjct: 65 MNKEAAKCRGIKALILTPTRELALQISECINDYAKYTQVRHGVIFGGVNQRPQVDMLHKG 124
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
DI+VATPGR++D L N + LD + +LDEADR+L++GF +I ++ PK +QT+
Sbjct: 125 IDILVATPGRLLD-LMNQGHIHLDKIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQTL 183
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
FSAT+ + + L L P+R+S P + + E++V +E + +L+S+
Sbjct: 184 FFSATMPDTIISLTNSLLKNPVRISITPKSSTVDAI-EQMVYFVEKKE--KSLLLVSILQ 240
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
K+ V++FS TK A ++ + G A + + +HGN +QA R AL F+ ++A
Sbjct: 241 KSEDQSVLVFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQLALGNFKSGKTRVMVA 300
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TD+AARG+DI + VINY P +YVHR+GRT RAG G A+TF + +R L+ I
Sbjct: 301 TDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNTGTALTFCSQEERKLVNDIQ 360
Query: 360 KRAGSKLK 367
K G KL
Sbjct: 361 KLTGKKLN 368
>gi|401679335|ref|ZP_10811267.1| DEAD/DEAH box helicase [Veillonella sp. ACP1]
gi|400219664|gb|EJO50527.1| DEAD/DEAH box helicase [Veillonella sp. ACP1]
Length = 523
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 146/368 (39%), Positives = 220/368 (59%), Gaps = 7/368 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L +S P+LRA +G+ +PTPIQ IP+A++G+D+ G A TG+GKTAAF LP LER+
Sbjct: 7 QLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVD 66
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + +V+IL+PTRELA+QV + K+AQ+TDI + GG Q AL+ P
Sbjct: 67 GSNRHV---QVVILSPTRELAIQVAEELNKMAQYTDITALPIYGGQDINRQFRALKKNPQ 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DH+ S+ +D+ +++LDEAD +L +GF +I++++ P+ QT+LF
Sbjct: 124 IIVATPGRLMDHMDRG-SIKFEDVKIVVLDEADEMLNMGFVDDINKILGAIPEDHQTLLF 182
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ + + EL + LT+P + P+ + + + ++ ++ + VL L
Sbjct: 183 SATMPKAIRELAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFD---VLCRLFDLQ 239
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
IIF+ TK+ + A +HG+L+Q +R + FR+ +D L+ATD
Sbjct: 240 APELAIIFTRTKRRVDEVTEALKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATD 299
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV V NY P+D SY HRVGRT RAG+ G A TFV + L AI +
Sbjct: 300 VAARGLDISGVSHVYNYDLPQDPESYTHRVGRTGRAGKAGEAYTFVIPREIEHLHAIERL 359
Query: 362 AGSKLKSR 369
K+ R
Sbjct: 360 TKRKIAKR 367
>gi|303228490|ref|ZP_07315321.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
ACS-134-V-Col7a]
gi|302516848|gb|EFL58759.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
ACS-134-V-Col7a]
Length = 523
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 146/368 (39%), Positives = 220/368 (59%), Gaps = 7/368 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L +S P+LRA +G+ +PTPIQ IP+A++G+D+ G A TG+GKTAAF LP LER+
Sbjct: 7 QLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVD 66
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + +V+IL+PTRELA+QV + K+AQ+TDI + GG Q AL+ P
Sbjct: 67 GSNRHV---QVVILSPTRELAIQVAEELNKMAQYTDITALPIYGGQDINRQFRALKKNPQ 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DH+ S+ +D+ +++LDEAD +L +GF +I++++ P+ QT+LF
Sbjct: 124 IIVATPGRLMDHMDRG-SIKFEDVKIVVLDEADEMLNMGFVDDINKILGAIPEDHQTLLF 182
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ + + EL + LT+P + P+ + + + ++ ++ + VL L
Sbjct: 183 SATMPKAIRELAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFD---VLCRLFDLQ 239
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
IIF+ TK+ + A +HG+L+Q +R + FR+ +D L+ATD
Sbjct: 240 APELAIIFTRTKRRVDEVTEALKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATD 299
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV V NY P+D SY HRVGRT RAG+ G A TFV + L AI +
Sbjct: 300 VAARGLDISGVSHVYNYDLPQDPESYTHRVGRTGRAGKAGEAYTFVIPREIEHLHAIERL 359
Query: 362 AGSKLKSR 369
K+ R
Sbjct: 360 TKRKIAKR 367
>gi|392538647|ref|ZP_10285784.1| ATP-dependent RNA helicase [Pseudoalteromonas marina mano4]
Length = 465
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 147/362 (40%), Positives = 214/362 (59%), Gaps = 5/362 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS+ L+ A GY PTPIQA IP + RD+ +A TG+GKTA F LP +ERL
Sbjct: 6 LGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIERLST 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
PK + +R LIL PTRELA+QV +E+ A+ +++ +V GG+ Q LR D
Sbjct: 66 GPKAKSNHVRALILAPTRELALQVSENVEEYAKHSNVSSFVVYGGVKINPQMQRLRKGVD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR+ID L N +V D + VL+LDEADR+L++GF +I ++ P +RQ ++F
Sbjct: 126 ILVATPGRLID-LHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRIIAKMPAKRQNLMF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++D+ L K + P+ +S ++T+ V + + R+ A+L L
Sbjct: 185 SATFSDDIRALAKGLINDPVEISVAAKNTTAKSVTQSVYAVDKGRKT---ALLSHLIRSN 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++FS TK A+RL + A +HGN +Q R++AL+ F+ V L+ATD
Sbjct: 242 DWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+ ARGLDI+ + V+NY P YVHR+GRT RAG G+A++FVT +D L I +
Sbjct: 302 IVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTVDDAVDLYGIERF 361
Query: 362 AG 363
G
Sbjct: 362 IG 363
>gi|414071784|ref|ZP_11407745.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. Bsw20308]
gi|410805784|gb|EKS11789.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. Bsw20308]
Length = 464
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/362 (41%), Positives = 214/362 (59%), Gaps = 5/362 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS+ L+ A GY PTPIQA IP + RD+ +A TG+GKTA F LP +ERL
Sbjct: 6 LGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIERLSS 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
PK + +R LILTPTRELA+QV +E+ A+ +D+ +V GG+ Q LR D
Sbjct: 66 GPKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRLRKGVD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR+ID L N +V D + VL+LDEADR+L++GF +I L+ P +RQ ++F
Sbjct: 126 ILVATPGRLID-LHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQNLMF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++++ L K + P+ +S ++T+ V + + R+ A+L L
Sbjct: 185 SATFSDEIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKTRKT---ALLSHLIRTN 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++FS TK A+RL + A +HGN +Q R++AL+ F+ V L+ATD
Sbjct: 242 DWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+ ARGLDI+ + V+NY P YVHR+GRT RAG G+A++FVT D L I +
Sbjct: 302 IVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTTEDAVDLYGIERF 361
Query: 362 AG 363
G
Sbjct: 362 IG 363
>gi|429760884|ref|ZP_19293342.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica KON]
gi|429176588|gb|EKY17963.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica KON]
Length = 523
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 146/368 (39%), Positives = 220/368 (59%), Gaps = 7/368 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L +S P+LRA +G+ +PTPIQ IP+A++G+D+ G A TG+GKTAAF LP LER+
Sbjct: 7 QLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVD 66
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + +V+IL+PTRELA+QV + K+AQ+TDI + GG Q AL+ P
Sbjct: 67 GSNRHV---QVVILSPTRELAIQVAEELNKMAQYTDITALPIYGGQDINRQFRALKKNPQ 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DH+ S+ +D+ +++LDEAD +L +GF +I++++ P+ QT+LF
Sbjct: 124 IIVATPGRLMDHMDRG-SIKFEDVKIVVLDEADEMLNMGFVDDINKILGAIPEDHQTLLF 182
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ + + EL + LT+P + P+ + + + ++ ++ + VL L
Sbjct: 183 SATMPKAIRELAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFD---VLCRLFDLQ 239
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
IIF+ TK+ + A +HG+L+Q +R + FR+ +D L+ATD
Sbjct: 240 APELAIIFTRTKRRVDEVTEALKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATD 299
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV V NY P+D SY HRVGRT RAG+ G A TFV + L AI +
Sbjct: 300 VAARGLDISGVSHVYNYDLPQDPESYTHRVGRTGRAGKAGEAYTFVIPREIEHLHAIERL 359
Query: 362 AGSKLKSR 369
K+ R
Sbjct: 360 TKRKIAKR 367
>gi|424073352|ref|ZP_17810770.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
gi|407996213|gb|EKG36696.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
Length = 445
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 223/376 (59%), Gaps = 10/376 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 EFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDMRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K IR +IL PTRELA Q +E+ +QFT ++ L+ GG K+Q LR +PD
Sbjct: 64 GPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGR+++ L N+ ++DL + VL+LDEADR+L++GFS ++ L C R QTMLF
Sbjct: 124 ILIGTPGRLLEQL-NAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E+I L P L + ++ S +++ V++E VL L +
Sbjct: 183 SATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITAD--HNVHKEQVLNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFG-LAAL--KAAELHGNLTQAQRLEALELFRKQHVDFL 297
K IIF+ TK A R L+G L AL KA LHG+ Q R A++ ++ +
Sbjct: 241 ETYQKAIIFTNTKAMADR---LYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIM 297
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATDVAARGLD+ G+ VIN+ PR YVHRVGRT RAG +G A++ + D +L+ +
Sbjct: 298 VATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSS 357
Query: 358 IAKRAGSKLKSRIVAE 373
+ + + R++ E
Sbjct: 358 VERYLKQSFERRVIKE 373
>gi|440741996|ref|ZP_20921326.1| helicase [Pseudomonas syringae BRIP39023]
gi|440378082|gb|ELQ14712.1| helicase [Pseudomonas syringae BRIP39023]
Length = 445
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 223/376 (59%), Gaps = 10/376 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 EFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K IR +IL PTRELA Q +E+ +QFT ++ L+ GG K+Q LR +PD
Sbjct: 64 GPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGR+++ L N+ ++DL + VL+LDEADR+L++GFS ++ L C R QTMLF
Sbjct: 124 ILIGTPGRLLEQL-NAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E+I L P L + ++ S +++ V++E VL L +
Sbjct: 183 SATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITAD--HNVHKEQVLNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFG-LAAL--KAAELHGNLTQAQRLEALELFRKQHVDFL 297
K IIF+ TK A R L+G L AL KA LHG+ Q R A++ ++ +
Sbjct: 241 ETYQKAIIFTNTKAMADR---LYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKVM 297
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATDVAARGLD+ G+ VIN+ PR YVHRVGRT RAG +G A++ + D +L+ +
Sbjct: 298 VATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSS 357
Query: 358 IAKRAGSKLKSRIVAE 373
+ + + R++ E
Sbjct: 358 VERYLKQSFERRVIKE 373
>gi|194759163|ref|XP_001961819.1| GF14739 [Drosophila ananassae]
gi|190615516|gb|EDV31040.1| GF14739 [Drosophila ananassae]
Length = 525
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 145/366 (39%), Positives = 212/366 (57%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ L +AC+ L + P+ IQ IP+AL G+D+ G A TGSGKT AFALP L LL
Sbjct: 75 DLGLNDTLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALL 134
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A L+LTPTRELA Q+ E + I+CC+VVGG+ Q L P
Sbjct: 135 ENPQRFFA---LVLTPTRELAFQIGEQFEALGSSIGIKCCVVVGGMDMVAQGLQLAKKPH 191
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++DHL N +L + L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 192 IIIATPGRLVDHLENMKGFNLKSIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 251
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSK 240
SAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 252 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQYYLFIPVKYKDVYLVHILNELAGN 311
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T + ++ L A LHG ++Q +RL AL F+ + LI+T
Sbjct: 312 SF----MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKDRSILIST 367
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+T V+ D L + I
Sbjct: 368 DVASRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEH 427
Query: 361 RAGSKL 366
G +L
Sbjct: 428 LLGKQL 433
>gi|288942468|ref|YP_003444708.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
vinosum DSM 180]
gi|288897840|gb|ADC63676.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
180]
Length = 438
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/364 (41%), Positives = 215/364 (59%), Gaps = 4/364 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS LLRA A GY++PTPIQ+ IP L RD+ +A TG+GKTAAF LP L L
Sbjct: 6 LGLSAELLRAIAAQGYTQPTPIQSKAIPAVLARRDVLAAAQTGTGKTAAFTLPMLHLLSQ 65
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+R A R L+LTPTRELA QV + Q +R + GG+ Q TALR DI
Sbjct: 66 STQRQRAPRALVLTPTRELAAQVGESVSTYGQHLPLRALQIFGGVGMVPQTTALRRGVDI 125
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+VATPGR++DH+ VDL + +LDEADR+L++GF +I +++L P +RQ +LFS
Sbjct: 126 LVATPGRLLDHV-GQGHVDLSKIEFFVLDEADRMLDMGFIHDIRRVLKLLPSKRQNLLFS 184
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT + ++++L L PLR+ P T+T+ V + R + ++L L +
Sbjct: 185 ATYSREIEQLAIGLLHDPLRIEVAPRNTAAETVTQVVHPVARE---AKRSLLSHLILQGD 241
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+V+IF+ TK A+RL G + AA +HGN +Q R AL F+ + L+ATD+
Sbjct: 242 WQQVLIFTRTKHGANRLAEQLGRDGITAAAIHGNKSQGARTRALADFKSGALRALVATDI 301
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
AARGLDI + V+N+ P YVHR+GRT RAG +G AV+ ++ ++R LL I +
Sbjct: 302 AARGLDIDRLPHVVNFELPNVPEDYVHRIGRTGRAGSDGTAVSLISPDERGLLAGIERLL 361
Query: 363 GSKL 366
G ++
Sbjct: 362 GRRI 365
>gi|332533777|ref|ZP_08409633.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas haloplanktis
ANT/505]
gi|332036708|gb|EGI73171.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas haloplanktis
ANT/505]
Length = 464
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/362 (41%), Positives = 215/362 (59%), Gaps = 5/362 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS+ L+ A GY PTPIQA IP + RD+ +A TG+GKTA F LP +ERL
Sbjct: 6 LGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIERLSS 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
PK + +R LILTPTRELA+QV +E+ A+ +D+ +V GG+ Q LR D
Sbjct: 66 GPKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRLRKGVD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR+ID L N +V D + VL+LDEADR+L++GF +I L+ P +RQ ++F
Sbjct: 126 ILVATPGRLID-LHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQNLMF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++++ L K + P+ +S ++T+ V + + R+ A+L L
Sbjct: 185 SATFSDEIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKTRKT---ALLSHLIRTN 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++FS TK A+RL + A +HGN +Q R++AL+ F+ V L+ATD
Sbjct: 242 DWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+ ARGLDI+ + V+NY P YVHR+GRT RAG G+A++FVT +D L I +
Sbjct: 302 IVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGATGHAISFVTVDDAVDLYGIERF 361
Query: 362 AG 363
G
Sbjct: 362 IG 363
>gi|402700606|ref|ZP_10848585.1| DEAD/DEAH box helicase [Pseudomonas fragi A22]
Length = 448
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/373 (40%), Positives = 223/373 (59%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 DFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +PD
Sbjct: 64 GPAKIRVSIKALILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGR+++ L N+ ++DL ++ VL+LDEADR+L++GFS ++ LV CP R+QTMLF
Sbjct: 124 ILIGTPGRLLEQL-NAGNLDLKEVEVLVLDEADRMLDMGFSEDVQRLVDECPNRQQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E+I L L + ++ +T ++V+ + ++E ++ L +
Sbjct: 183 SATTGGSGLREMIGKVLNNAEHLQLNQVSQLNATTRQQVITADHNQ--HKEQIVNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K IIF+ T+ A R+ KA LHG Q R A++ ++ V L+AT
Sbjct: 241 ETYQKAIIFTNTRAMADRIYGRLVAQDYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ ++ +
Sbjct: 301 DVAARGLDVDGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSVER 360
Query: 361 RAGSKLKSRIVAE 373
+ R + E
Sbjct: 361 YLKQSFERRTIKE 373
>gi|383755140|ref|YP_005434043.1| putative DEAD-box ATP-dependent RNA helicase CshA [Selenomonas
ruminantium subsp. lactilytica TAM6421]
gi|381367192|dbj|BAL84020.1| putative DEAD-box ATP-dependent RNA helicase CshA [Selenomonas
ruminantium subsp. lactilytica TAM6421]
Length = 526
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 153/394 (38%), Positives = 234/394 (59%), Gaps = 24/394 (6%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E+ LSR +L+A +G+ +P+PIQA IPL L G D+ G A TG+GKTAAF +PT+E++
Sbjct: 10 EIELSRKVLQALREMGFEEPSPIQAQTIPLTLEGHDVIGQAQTGTGKTAAFGIPTVEKI- 68
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
++ ++ LILTPTRELA+Q + KI +F +R + GG S Q +L+
Sbjct: 69 --AEKFHKVQALILTPTRELAIQTAEELNKIGKFKRVRTLPIYGGQSIDRQIRSLKRGVH 126
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
VV TPGR++DHL N ++DL+++ L+LDEAD +L++GF +I +++ P RQT+LF
Sbjct: 127 AVVGTPGRLLDHL-NRGTLDLENVQTLVLDEADEMLDMGFIDDIENIIKQIPDGRQTLLF 185
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA-----VLLS 236
SAT+ +++L + + P R+ T+T+E + + + ++ E L
Sbjct: 186 SATMPGPIEKLSRRYMEHPQRV----------TITKENLTVPLIDQLYYETREKFEGLCR 235
Query: 237 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 296
+ T K+IIF TK+A L A LHG+L+Q QR ++ FR+ +D
Sbjct: 236 VLDVEETGKLIIFCRTKRAVDDLTASLEARGYSAGGLHGDLSQIQRDRVMKRFREGRIDI 295
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 356
LIATDVAARG+DI + VINY P+D SYVHR+GRT RAGR+G A+TF+ + L+
Sbjct: 296 LIATDVAARGIDIDDITHVINYDIPQDHESYVHRIGRTGRAGRKGVAMTFIEPKEYRQLR 355
Query: 357 AIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQV 390
I K A +K++ + + S ++E+ +D V
Sbjct: 356 LIMKLAHTKIQRK-----ELPTASDLLERQKDLV 384
>gi|410637091|ref|ZP_11347679.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola lipolytica E3]
gi|410143470|dbj|GAC14884.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola lipolytica E3]
Length = 412
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 145/365 (39%), Positives = 218/365 (59%), Gaps = 5/365 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L + + A GY++PTPIQA IP L +D+ +A TG+GKTA F LP LE+L +
Sbjct: 6 LGLGQNIANALIEKGYNEPTPIQAQAIPAILDNQDVMAAAQTGTGKTAGFVLPILEKLSH 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ + + L+LTPTRELA Q+ ++ ++ +IR +V GG+S Q ALR D
Sbjct: 66 HPRPKGNQVNALVLTPTRELAAQISENVKAYSKNLNIRHTVVFGGVSINPQMMALRKGVD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++D L N +V D+L +L+LDEADR+L++GF +I +++L P RQ +LF
Sbjct: 126 ILVATPGRLLD-LYNQKAVKFDNLQILVLDEADRMLDMGFIHDIKRIIKLLPNSRQNLLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT + + EL K + P+ +S P+ K + + + + + + + +L + +
Sbjct: 185 SATFSTQIRELAKSIVNNPVEISVAPANKTADKVEQCIHPVDKSK---KSGLLTHIIKQQ 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++FS TK A+RL + +A +HGN +Q R +AL F+ + L+ATD
Sbjct: 242 NMDQVLVFSRTKHGANRLAKQLTARGIVSAAIHGNKSQGARTKALAEFKSSAIQVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARGLDI + VINY P YVHR+GRT RAG G+A++ VT D LLK I +
Sbjct: 302 IAARGLDIHQLPFVINYDLPHVAEDYVHRIGRTGRAGATGHAISLVTAEDIKLLKDIERV 361
Query: 362 AGSKL 366
G K+
Sbjct: 362 IGEKI 366
>gi|421750235|ref|ZP_16187502.1| helicase, partial [Cupriavidus necator HPC(L)]
gi|409770743|gb|EKN53287.1| helicase, partial [Cupriavidus necator HPC(L)]
Length = 423
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/361 (41%), Positives = 222/361 (61%), Gaps = 13/361 (3%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL------Y 62
+LRA GY+KPTPIQA IP+ L G+D+ G+A TG+GKTA FALP ++RLL
Sbjct: 30 VLRALSEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQRLLPLANASA 89
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P R P +R L+LTPTRELA QV+ + + A+ TD+R +V GG+ Q ALR +I
Sbjct: 90 SPARHP-VRALMLTPTRELADQVYDNVARYARHTDLRSTVVFGGVDMNPQTDALRRGVEI 148
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+VATPGR++DH++ SV+L + +L+LDEADR+L++GF ++ ++ L P +RQT+LFS
Sbjct: 149 LVATPGRLLDHVQQK-SVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAKRQTLLFS 207
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL---CS 239
AT + ++ +L L +P+ + S + + V +++ ++ QEAV+ L
Sbjct: 208 ATFSPEIKKLAASYLHQPVTIEVARSNSANENVRQTVYQVQDGQK--QEAVVHLLKQRAD 265
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+ + + I+F +K RL + AA +HG+ TQ +R++ LE F++ +D L+A
Sbjct: 266 QGLSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLEGFKQGTIDALVA 325
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVAARGLDI + VIN+ P + YVHR+GRT RAG G A++ D LL I
Sbjct: 326 TDVAARGLDIADMPCVINFDLPFNAEDYVHRIGRTGRAGATGDALSIFVPGDERLLADIE 385
Query: 360 K 360
K
Sbjct: 386 K 386
>gi|404406153|ref|ZP_10997737.1| DNA/RNA helicase [Alistipes sp. JC136]
Length = 541
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 146/366 (39%), Positives = 220/366 (60%), Gaps = 10/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L LS PLLRA GY+ PTPIQ IP L GRD+ G A TG+GKTAAF LP L+ L
Sbjct: 5 DLGLSEPLLRAIGEKGYTDPTPIQQQAIPPVLEGRDLQGCAQTGTGKTAAFTLPILQLLA 64
Query: 62 YRP----KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 117
P +R IR L++TPTRELA+Q+ A++ IR C++ GG++ + Q AL+
Sbjct: 65 AEPAARGRR--EIRALVITPTRELAIQIDECCRDYARYLSIRHCVIFGGVNQRPQVDALQ 122
Query: 118 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 177
D++VATPGR++D L + LD + +LDEADR+L++GF +I ++ L P +RQ
Sbjct: 123 RGVDLLVATPGRLLD-LIGQGYISLDKIRFFVLDEADRMLDMGFIHDIRRILPLLPAQRQ 181
Query: 178 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 237
T+ FSAT+ D+ +L L P+ ++ P A T+++ R+ + + +L+ L
Sbjct: 182 TLFFSATMPPDIAQLAAKILHDPVLVTVTPPASVVETISQ---RVHFAEKAEKSQLLIDL 238
Query: 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
+ +V++F+ TK A +L + A ++++ +HGN +Q R++A+ F+ L
Sbjct: 239 LEGSDAQQVLVFTRTKHGADKLAKILNRAGIQSSAIHGNKSQNARVKAMNDFKGGFCRVL 298
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
IATD+AARG+DI + VINY P +YVHR+GRT RAG EG A +F ++++ LK
Sbjct: 299 IATDIAARGIDIDQLPLVINYDLPEVPETYVHRIGRTGRAGYEGTAWSFCSEDEFDYLKD 358
Query: 358 IAKRAG 363
I K G
Sbjct: 359 IQKLTG 364
>gi|157963311|ref|YP_001503345.1| DEAD/DEAH box helicase [Shewanella pealeana ATCC 700345]
gi|157848311|gb|ABV88810.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
700345]
Length = 511
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 148/371 (39%), Positives = 221/371 (59%), Gaps = 7/371 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS +L+A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE LL
Sbjct: 6 LGLSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE-LLS 64
Query: 63 RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+ + PA +R L+LTPTRELA QV +E + ++ +V GG+ Q T L
Sbjct: 65 KGTKAPAKQVRALVLTPTRELAAQVGESVETYGKNLPLKSAVVFGGVGIGPQITKLNRGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DI+VATPGR++D L N ++ L VL+LDEADR+L++GF +I +++ + P +RQ ++
Sbjct: 125 DILVATPGRLLD-LYNQRALSFSQLEVLVLDEADRMLDMGFIHDIKKILAILPAKRQNLM 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++D+ +L K + P+ +S P +T+ + V + + ++ AVL+ L +
Sbjct: 184 FSATFSDDIRQLAKGLVNNPVEISVTPRNATANTVQQWVCPVDQSQKT---AVLVKLIKQ 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++FS TK A+RL + AA +HGN +Q R +AL F+ V L+AT
Sbjct: 241 NDWQQVLVFSRTKHGANRLAKNLEAKDITAAAIHGNKSQGARTKALADFKSGAVRVLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARGLDI + V+N+ P YVHR+GRT RAG G+AV+ V++ + LL+ I
Sbjct: 301 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGHAVSLVSNEETKLLRDIEL 360
Query: 361 RAGSKLKSRIV 371
L+ R+V
Sbjct: 361 LIKQNLERRVV 371
>gi|195155425|ref|XP_002018605.1| GL25891 [Drosophila persimilis]
gi|194114758|gb|EDW36801.1| GL25891 [Drosophila persimilis]
Length = 518
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 145/366 (39%), Positives = 213/366 (58%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ L +AC+ L + P+ IQ IP+AL G+D+ G A TGSGKT AFALP L LL
Sbjct: 73 DLGLNDTLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALL 132
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A L+LTPTRELA Q+ E + I+CC+VVGG+ Q L P
Sbjct: 133 ESPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 189
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++DHL N +L + L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 190 IIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 249
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSK 240
SAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 250 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGN 309
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T + ++ L A LHG ++Q +RL AL F+ ++ LI+T
Sbjct: 310 SF----MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILIST 365
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+T V+ D L + I
Sbjct: 366 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITIVSQYDIELYQRIEH 425
Query: 361 RAGSKL 366
G +L
Sbjct: 426 LLGKQL 431
>gi|125987477|ref|XP_001357501.1| GA21647 [Drosophila pseudoobscura pseudoobscura]
gi|54645833|gb|EAL34571.1| GA21647 [Drosophila pseudoobscura pseudoobscura]
Length = 518
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 145/366 (39%), Positives = 213/366 (58%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ L +AC+ L + P+ IQ IP+AL G+D+ G A TGSGKT AFALP L LL
Sbjct: 73 DLGLNDTLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALL 132
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A L+LTPTRELA Q+ E + I+CC+VVGG+ Q L P
Sbjct: 133 ESPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 189
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++DHL N +L + L++DEADR+L + F E+ +++++ P+ R+T LF
Sbjct: 190 IIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 249
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSK 240
SAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 250 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGN 309
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F +IF T + ++ L A LHG ++Q +RL AL F+ ++ LI+T
Sbjct: 310 SF----MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILIST 365
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+T V+ D L + I
Sbjct: 366 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITIVSQYDIELYQRIEH 425
Query: 361 RAGSKL 366
G +L
Sbjct: 426 LLGKQL 431
>gi|429216159|ref|ZP_19207318.1| putative ATP-dependent RNA helicase [Pseudomonas sp. M1]
gi|428153812|gb|EKX00366.1| putative ATP-dependent RNA helicase [Pseudomonas sp. M1]
Length = 441
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 154/374 (41%), Positives = 222/374 (59%), Gaps = 7/374 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+A E L +++PT +QAA IP AL GRD+ +A TGSGKTAAF LP L RLL
Sbjct: 4 QFALHERLLKALETLSFTEPTAVQAAAIPKALEGRDLRVTAQTGSGKTAAFVLPLLHRLL 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K R LIL PTRELA Q +E+ AQFT I+ CL+ GG K+Q LR P+
Sbjct: 64 SEEKPKTGARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGARLRKNPE 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGR+ + N+ ++ L D+ VL+LDEADR+L++GF+ ++ +L CP +RQT+LF
Sbjct: 124 IIIGTPGRLNEQF-NAGNLPLGDVEVLVLDEADRMLDMGFAEDVLKLAGACPAQRQTLLF 182
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN--QEAVLLSLCS 239
SAT + +++ L +P L + R S L E++ + + + N +EA+L L
Sbjct: 183 SATAGSGLHAMVEQVLREPESLQLN----RVSELNEDIAQQVILVDDNAHKEAILHWLLE 238
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
K I+F+ T+ A RL A K LHG Q R A+E ++ V L+A
Sbjct: 239 NETFDKAIVFTNTRVQADRLTGRLIAAGHKVFVLHGEKDQKDRKLAIERLKQGAVKILVA 298
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVAARGLD+ G+ V+N+ PR YVHR+GRT RAG G A++ V+ +D +L+ +I
Sbjct: 299 TDVAARGLDVEGLDLVLNFDMPRRGDEYVHRIGRTGRAGEAGLAISLVSHSDWNLMSSIE 358
Query: 360 KRAGSKLKSRIVAE 373
+ + + R + E
Sbjct: 359 RYLKVRFEQRTIKE 372
>gi|418063902|ref|ZP_12701506.1| DEAD/DEAH box helicase domain protein, partial [Methylobacterium
extorquens DSM 13060]
gi|373556194|gb|EHP82728.1| DEAD/DEAH box helicase domain protein, partial [Methylobacterium
extorquens DSM 13060]
Length = 417
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 146/359 (40%), Positives = 220/359 (61%), Gaps = 6/359 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L++P+LRA E GY PTPIQA +P A+ GRD+CG A TG+GKTAAFALP L RL
Sbjct: 6 DFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHRLS 65
Query: 62 YRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
+R P RVL+L+PTRELA Q+ + +V GG++ QE A+
Sbjct: 66 LDSRRAPRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQERAIAPG 125
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
DI+VATPGR+ID L + ++ L+ + +L+LDEAD++L+LGF + +V++ P +RQ++
Sbjct: 126 VDILVATPGRLID-LVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAKRQSL 184
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
FSAT+ +++ L L+ P++++ P A + ++V+ ++A+L +
Sbjct: 185 FFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFCHTG---AKQALLNHVLR 241
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+V++F+ TK A R+ A++ +A +HGN +Q QR AL FR L+A
Sbjct: 242 DPKIERVLVFTRTKHGADRVVRGLDKASVVSAAIHGNKSQPQRERALAAFRDGSYRVLVA 301
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
TD+AARG+D+ GV V+NY P SYVHR+GRTARAG EG A++F D +R+ L+ I
Sbjct: 302 TDIAARGIDVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRDI 360
>gi|85708371|ref|ZP_01039437.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
gi|85689905|gb|EAQ29908.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
Length = 484
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/374 (40%), Positives = 222/374 (59%), Gaps = 15/374 (4%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L LS+P+L+A + GYS PTPIQ IP L GRD+ G A TG+GKTAAF LP+++RL
Sbjct: 6 DLGLSQPVLQALDLKGYSTPTPIQEQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSIDRLR 65
Query: 62 YRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
RIP + R+L+L PTREL Q+ + + ++ +VGG S L
Sbjct: 66 EADNRIPFKSCRMLVLAPTRELVSQIAASAKDYGALAGLKVQSIVGGTSVNKDRNKLHRG 125
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
DI++ATPGR++D L + + +L + VL+LDEAD++L+LGF + + +L PK RQT+
Sbjct: 126 TDILIATPGRLLD-LIDQKAFNLGSVEVLVLDEADQMLDLGFVHALRRISQLVPKERQTL 184
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL-- 237
FSAT+ + + EL+ P+++S P ST E + + M + +++ LL L
Sbjct: 185 FFSATMPKAIKELVSGYCNNPVQVSVTPE----STTAERIDQYLFMVQQDEKQSLLELIL 240
Query: 238 -----CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 292
F +++IF+ TK A R+ A + A +HGN +Q QR AL+ FR+
Sbjct: 241 SGRHKVPGEF-ERILIFTRTKHGADRVVKKLSRAGIPANAIHGNKSQPQRQRALDEFRRG 299
Query: 293 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 352
L+ATDVAARG+DI GV V+NY P YVHR+GRTARAG++G A+ F +++R
Sbjct: 300 KTMILVATDVAARGIDIPGVSHVLNYELPNVPEQYVHRIGRTARAGKDGVAIAFCAEDER 359
Query: 353 SLLKAIAKRAGSKL 366
+ LK I K G++L
Sbjct: 360 AYLKDIRKTTGAEL 373
>gi|218290125|ref|ZP_03494287.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
acidocaldarius LAA1]
gi|218239834|gb|EED07023.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
acidocaldarius LAA1]
Length = 465
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 163/397 (41%), Positives = 231/397 (58%), Gaps = 31/397 (7%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L+R +L+A +G+ +P+PIQAACIP+ L GRD+ G A TG+GKTAAF +P +ER+
Sbjct: 23 FGLNRRVLQAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFGIPLVERVST 82
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P+ ++ ++LTPTRELA+QV I KIA++ +R + GG S Q AL+ I
Sbjct: 83 EPR----VQAIVLTPTRELAIQVAGEIRKIAKYKRVRSVPIYGGQSIVHQIRALKQGVQI 138
Query: 123 VVATPGRMIDHL-RNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
V+ TPGR++DH+ R ++S L D+ +++LDEAD +L++GF +I ++R P RQTMLF
Sbjct: 139 VIGTPGRVLDHIHRGTLS--LGDVRMVVLDEADEMLDMGFIDDIEAILRETPSDRQTMLF 196
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV----LLSL 237
SAT +V L LR DP T+ V + ++ +V + + L SL
Sbjct: 197 SATFPNEVKRL-------ALRYMRDPQH---ITVNRGEVTVPQIDQVCYKVLERNKLDSL 246
Query: 238 CSKTFTSKV---IIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 294
C + + IIF TK+ L A LHG+L+QAQR + FRK +
Sbjct: 247 CRIVDSEDIQLGIIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEI 306
Query: 295 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 354
+ L+ATDVAARGLD+ V VINY P+D SYVHR+GRT RAG+ G A+T VT + L
Sbjct: 307 ELLVATDVAARGLDVDDVTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYKL 366
Query: 355 LKAIAKRAGSKLKSR------IVAEQSITKW-SKIIE 384
LK I + K+ R VAE+ W SKI++
Sbjct: 367 LKQIEREIKQKITVREVPSLEDVAERQAEMWRSKIVD 403
>gi|33594279|ref|NP_881923.1| ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
gi|384205577|ref|YP_005591316.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
gi|408417408|ref|YP_006628115.1| ATP-dependent RNA helicase [Bordetella pertussis 18323]
gi|33564354|emb|CAE43658.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
gi|332383691|gb|AEE68538.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
gi|401779578|emb|CCJ65116.1| putative ATP-dependent RNA helicase [Bordetella pertussis 18323]
Length = 477
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/362 (41%), Positives = 220/362 (60%), Gaps = 14/362 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL+ GY+ PTPIQA IP+ + GRD+ G+A TG+GKTAAF LP L RL+
Sbjct: 21 DFGLHPLLLKLIADTGYTNPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHRLM 80
Query: 62 ------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
P R P +R LILTPTRELA QV+ +++ + T +R +V GG+ Q+ A
Sbjct: 81 PLANTSASPARHP-VRALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQKEA 139
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR +++VATPGR++DH+ +V+L + +L+LDEADR+L++GF ++ ++RL P +
Sbjct: 140 LRRGCEVLVATPGRLLDHVEQK-NVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQ 198
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVL 234
RQ +LFSAT + ++ +L + L P+ + A R +T + V +I +M + A +
Sbjct: 199 RQGLLFSATFSNEIRKLGRSYLNHPVEIEV---AARNAT-ADTVTQIAYQMHGDTKRAAV 254
Query: 235 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 294
+ L +VI+FS TK RL +KA +HG+ TQ R++ALE F+ +
Sbjct: 255 VHLVKSRGLKQVIVFSNTKIGTARLARQLERDGVKAESIHGDKTQGDRMKALEAFKAGDL 314
Query: 295 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT-FVTDNDRS 353
+ L+ATDVAARGLD+ GV VINY P + YVHR+GRT RAG G A+ F D +R
Sbjct: 315 EVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTADEERY 374
Query: 354 LL 355
LL
Sbjct: 375 LL 376
>gi|237798870|ref|ZP_04587331.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331021724|gb|EGI01781.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 445
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 156/376 (41%), Positives = 223/376 (59%), Gaps = 10/376 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 EFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K IR +IL PTRELA Q +E+ +QFT ++ L+ GG K+Q LR +PD
Sbjct: 64 GPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGR+++ L N+ ++DL + VL+LDEADR+L++GFS ++ L C R QTMLF
Sbjct: 124 ILIGTPGRLLEQL-NAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E+I L P L + ++ S +++ V++E VL L +
Sbjct: 183 SATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITAD--HNVHKEQVLNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFG-LAAL--KAAELHGNLTQAQRLEALELFRKQHVDFL 297
K IIF+ TK A R L+G L AL KA LHG+ Q R A++ ++ +
Sbjct: 241 ETYQKAIIFTNTKAMADR---LYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIM 297
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATDVAARGLD+ G+ V+N+ PR YVHRVGRT RAG +G A++ + D +L+ +
Sbjct: 298 VATDVAARGLDVEGLDMVVNFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSS 357
Query: 358 IAKRAGSKLKSRIVAE 373
+ + + R++ E
Sbjct: 358 VERYLKQSFERRVIKE 373
>gi|92112945|ref|YP_572873.1| DEAD/DEAH box helicase [Chromohalobacter salexigens DSM 3043]
gi|91796035|gb|ABE58174.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
DSM 3043]
Length = 452
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 145/347 (41%), Positives = 209/347 (60%), Gaps = 7/347 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L A GY P+PIQA IP L GRD+ +A TG+GKTA F LP LERL
Sbjct: 6 LGLSAPILDAVAEQGYETPSPIQAKAIPAVLEGRDVMAAAQTGTGKTAGFTLPILERLAA 65
Query: 63 RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
R P +R LILTPTRELA Q+ + IE + +R +V GG+ Q LR
Sbjct: 66 G-TRAPGKQVRALILTPTRELAAQIGANIEAYGKHLPLRSAVVFGGVKINPQIAKLRGGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DI+VATPGR++D L +V+ D L VL+LDEADR+L++GF +I +++ P +RQ +L
Sbjct: 125 DILVATPGRLLD-LHGQKAVNFDALDVLVLDEADRMLDMGFIHDIRRILKTLPSKRQNLL 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++++ +L K + P+ +S P T+T+ + + + R + A+L L +
Sbjct: 184 FSATFSQEIRQLAKGLVNDPVEISVTPRNTTAETVTQWIHPVDKAR---KPALLTHLIHE 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++F TK A+RL A ++AA +HGN +Q R +AL+ F+ + L+AT
Sbjct: 241 HQWQQVLVFMRTKHGANRLSRHLEEAGIEAAAIHGNKSQNARTKALDGFKSGEIRVLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 347
D+AARGLDI + V+N+ P YVHR+GRT RAG G+A++ V
Sbjct: 301 DIAARGLDINQLPQVVNFELPNVAEDYVHRIGRTGRAGASGHAISLV 347
>gi|397685466|ref|YP_006522785.1| DEAD/DEAH box helicase [Pseudomonas stutzeri DSM 10701]
gi|395807022|gb|AFN76427.1| DEAD/DEAH box helicase [Pseudomonas stutzeri DSM 10701]
Length = 592
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/367 (40%), Positives = 216/367 (58%), Gaps = 19/367 (5%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL- 61
L LS L A EA GY++PTP+Q IP L GRD+ +A TG+GKT FALP LE L
Sbjct: 6 LGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLELLFP 65
Query: 62 ---------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 112
Y P++ RVL+LTPTRELA QVH + A+ + + GG+ Q
Sbjct: 66 GGHPDREHRYGPRQP---RVLVLTPTRELAAQVHDSFKVYARDLPFKSACIFGGVGMNPQ 122
Query: 113 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172
A+ D++VA PGR++D L N +VDL + +L+LDEADR+L++GF ++ +++
Sbjct: 123 VQAIAKGLDVLVACPGRLLD-LANQKAVDLGHVEILVLDEADRMLDMGFIHDVKKVLAKL 181
Query: 173 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMREVNQE 231
P +RQ +LFSAT ++D+ +L L +P R+ P P+T E + R+ R+ ++
Sbjct: 182 PAKRQNLLFSATFSKDITDLAGKLLHEPERIEVTP----PNTTVERIEQRVYRLPATHKR 237
Query: 232 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 291
A+L L S+ +V++F+ TK A+RL L AA +HGN +Q R +AL F+
Sbjct: 238 ALLAHLISQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKA 297
Query: 292 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
V L+ATD+AARGLDI + V+N+ P YVHR+GRT RAGR G A++ V+ ++
Sbjct: 298 NQVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVSPDE 357
Query: 352 RSLLKAI 358
LLK I
Sbjct: 358 EKLLKGI 364
>gi|212712156|ref|ZP_03320284.1| hypothetical protein PROVALCAL_03238 [Providencia alcalifaciens DSM
30120]
gi|422018909|ref|ZP_16365460.1| ATP-dependent RNA helicase with P-loop hydrolase domain
[Providencia alcalifaciens Dmel2]
gi|212685203|gb|EEB44731.1| hypothetical protein PROVALCAL_03238 [Providencia alcalifaciens DSM
30120]
gi|414104095|gb|EKT65667.1| ATP-dependent RNA helicase with P-loop hydrolase domain
[Providencia alcalifaciens Dmel2]
Length = 477
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/363 (41%), Positives = 220/363 (60%), Gaps = 10/363 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ +LRA LGY PTPIQ IP L G+D+ SA TG+GKTA F LP L++L+
Sbjct: 34 DLALNEEILRAINELGYESPTPIQQQAIPAVLAGKDLLASAQTGTGKTAGFTLPILQKLV 93
Query: 62 YRPK---RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
P+ R P IR LILTPTRELA QV +++ ++ IR +V GG+S Q LR
Sbjct: 94 DNPRGNNRRP-IRALILTPTRELAAQVAENVKEYSRHLKIRSFVVFGGVSINPQMMKLRG 152
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
D+++ATPGR++D L + +VDL + V +LDEADR+L++GF +I ++ PK+RQ
Sbjct: 153 GVDVLIATPGRLLD-LEHQNAVDLSQVEVFVLDEADRMLDMGFIHDIRRVITKLPKKRQN 211
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS-L 237
+LFSAT ++++ +L L P+ + P ++ +E+V + + + N++A LLS +
Sbjct: 212 LLFSATFSDEIKQLASKLLNNPVSIEVAPR----NSASEQVTQYVHLVDKNRKAELLSFM 267
Query: 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
+ +V++F+ TK A+RL +KAA +HGN +Q R AL F+ + L
Sbjct: 268 IGRENWQQVLVFTRTKHGANRLAEHLNKDGVKAAAIHGNKSQGARTRALADFKSGDIRVL 327
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATD+AARGLDI + V+N+ P YVHR+GRT RA G AV+ V ++ LLK
Sbjct: 328 VATDIAARGLDIEQLPYVVNFELPNVAEDYVHRIGRTGRAEATGMAVSLVCIDEAKLLKD 387
Query: 358 IAK 360
I K
Sbjct: 388 IEK 390
>gi|83720702|ref|YP_441535.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
gi|83654527|gb|ABC38590.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 571
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 147/365 (40%), Positives = 226/365 (61%), Gaps = 11/365 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L+ +LRA GY+ PTPIQA IP+ L+GRD+ G+A TG+GKTA+F+LP ++RLL
Sbjct: 105 QFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLL 164
Query: 62 YR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
+ P R P +R LILTPTRELA QV + + A+ T +R +V GG+ Q
Sbjct: 165 PQANTSASPARHP-VRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAE 223
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR +I++ATPGR++DH++ + +L + +L+LDEADR+L++GF ++ ++ L PK
Sbjct: 224 LRRGVEILIATPGRLLDHVQQK-TANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 282
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQT+LFSAT + ++ +L L P + S ST+T+ V + E +++A ++
Sbjct: 283 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVA---EGDKQAAVV 339
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
L +VI+F +K A RL + AA +HG+ +Q++R++AL+ F++ ++
Sbjct: 340 KLIRDRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIE 399
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARGLDI + VIN+ P + YVHR+GRT RAG G A++ + N+R L
Sbjct: 400 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 459
Query: 356 KAIAK 360
I K
Sbjct: 460 ADIEK 464
>gi|356504849|ref|XP_003521207.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 10-like [Glycine
max]
Length = 439
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 144/365 (39%), Positives = 213/365 (58%), Gaps = 4/365 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L LS L+ ACE LG+ P IQ IPLAL G+D+ G A TGSGKT AFALP L LL
Sbjct: 13 DLGLSESLVEACEKLGWKNPLKIQTEAIPLALEGKDVIGLAQTGSGKTGAFALPILHALL 72
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P R +L+PTRELA+Q+ E + ++C ++VGG+ Q + P
Sbjct: 73 EAP-RPKDFFACVLSPTRELAIQIAEQFEALGSEIGVKCAVLVGGIDMVQQSIKIAKQPH 131
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+V TPGR+IDHL+++ L L L+LDEADRLL F ++E++++ P+ R+T LF
Sbjct: 132 IIVGTPGRVIDHLKHTKGFSLSRLKYLVLDEADRLLNEDFEESLNEILQMIPRERRTFLF 191
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ V +L ++ L P+++ A TL ++ R + +++ L+ + ++
Sbjct: 192 SATMTKKVQKLQRVCLRNPVKIEASSKYSTVDTLKQQY---RFLPAKHKDCYLVYILTEM 248
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
S ++F+ T A L ++ LKA ++G+++Q++RL AL F+ + L+ TD
Sbjct: 249 AGSTSMVFTRTCDATRLLALILRNLGLKAIPINGHMSQSKRLGALNKFKSGECNILLCTD 308
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V VINY P + Y+HRVGRTARAGR G A++ V + I K
Sbjct: 309 VASRGLDIPTVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKL 368
Query: 362 AGSKL 366
G KL
Sbjct: 369 IGKKL 373
>gi|348523239|ref|XP_003449131.1| PREDICTED: probable ATP-dependent RNA helicase DDX49 [Oreochromis
niloticus]
Length = 480
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 157/384 (40%), Positives = 222/384 (57%), Gaps = 15/384 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS L++ C+ LG +KPTP+Q C+P L GRD G A TGSGKTAAF LP L++L
Sbjct: 7 LGLSDWLVKQCKQLGINKPTPVQENCMPAILQGRDCMGCAKTGSGKTAAFVLPVLQKLSE 66
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P I L+LTPTRELA Q+ + + ++ C++VGG+ Q L + P +
Sbjct: 67 DPY---GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSNQPHV 123
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG---FSAEIHELVRLCPKRRQTM 179
VVATPGR+ DH+R+S + + + LILDEADRLLE G F+ ++ ++ + P +RQT+
Sbjct: 124 VVATPGRLADHIRSSNTFSMKRIQFLILDEADRLLEQGCTDFTKDLEVILEILPAKRQTL 183
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
LFSATLT+ + EL +++ KP + + T+ E R E ++A L+ L
Sbjct: 184 LFSATLTDTLQELKSIAMNKPFFWESKSETR---TVEELDQRYILTPEKVKDAYLVHLI- 239
Query: 240 KTFTSK-----VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 294
+TFT + +IIF+ T ++ L ++ LH + Q QR L F+
Sbjct: 240 QTFTDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQKQRFANLAKFKASVY 299
Query: 295 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 354
LIATDVAARGLDI VQ VIN+ P Y+HRVGRTARAGR G ++T VT D L
Sbjct: 300 KILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIHL 359
Query: 355 LKAIAKRAGSKLKSRIVAEQSITK 378
+ +I ++ +KLK V E+ + K
Sbjct: 360 IHSIEEQIQTKLKEYPVVEKEVLK 383
>gi|406979406|gb|EKE01199.1| hypothetical protein ACD_21C00193G0001 [uncultured bacterium]
Length = 368
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 156/365 (42%), Positives = 211/365 (57%), Gaps = 5/365 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L +L+A +A GY KPTPIQ IP L+G+D+ SA TG+GKTAA+ LP L+ L
Sbjct: 5 QLQLHEKILQAVKACGYDKPTPIQVKAIPSILSGKDLVASAQTGTGKTAAYVLPCLQLLG 64
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P RVLIL PTRELA Q+ +I K +F VGG+S Q L D
Sbjct: 65 AHKSSKP--RVLILAPTRELAGQITKVIAKYGKFMKPNIASFVGGVSYDRQLKELSRPID 122
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR++DH+ N +DL + +LILDEADR+L++GF I +V+ PK RQT+LF
Sbjct: 123 IVIATPGRLMDHMENR-RLDLSRIEMLILDEADRMLDMGFIPAIKRIVKATPKSRQTLLF 181
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT + + ++K L P+R++ P + +E+ R R NQ VL L +
Sbjct: 182 SATADDKLMSVMKDLLKNPVRINISQDKVDPKLIKQEIYMSRDSRHKNQ--VLAQLLDQQ 239
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
K IIFS TK+ A +L A+ +HG+L Q R L FR V FL+ATD
Sbjct: 240 NIFKAIIFSATKRHASKLATQLRDNGYAASPMHGDLKQNARNRTLAQFRTGEVQFLVATD 299
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARG+D+ V VINY PR YVHR+GRT RAG+ G A++ ++ L++I +
Sbjct: 300 VAARGIDVSDVSHVINYDLPRFHEDYVHRIGRTGRAGKTGVAISIALHSEMKQLQSIERY 359
Query: 362 AGSKL 366
G KL
Sbjct: 360 IGKKL 364
>gi|167625028|ref|YP_001675322.1| DEAD/DEAH box helicase [Shewanella halifaxensis HAW-EB4]
gi|167355050|gb|ABZ77663.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 437
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 143/347 (41%), Positives = 214/347 (61%), Gaps = 9/347 (2%)
Query: 17 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK-----RIPAIR 71
GY +PT IQA IP L GRDI SA TG+GKTAAF LP L+RL+ + +
Sbjct: 44 GYQQPTAIQAEAIPAILAGRDIMASAQTGTGKTAAFTLPLLQRLIDKSSSDEQSKAKRAS 103
Query: 72 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMI 131
VL+L PTRELAVQV++ + + A TD+ ++ GG+S Q T L + D++VATPGR++
Sbjct: 104 VLVLAPTRELAVQVNTNVSQYAVNTDVSSIVIYGGVSIDAQATKLAAGVDVIVATPGRLL 163
Query: 132 DHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDE 191
DH+R +++L D+ L+ DEADR+L++GF EI+ +++ P +RQT+LFSAT + + E
Sbjct: 164 DHVRRG-TLNLSDIEYLVFDEADRMLDMGFMDEINAILKQLPAKRQTLLFSATFSSAIFE 222
Query: 192 LIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSG 251
L K L KPLR+ D + +++ + V + R+ +L L +K+ +V++FS
Sbjct: 223 LSKKLLQKPLRIEVDKANSAANSIEQVVYAVDSERKTE---LLCHLINKSAWQQVLVFSR 279
Query: 252 TKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG 311
KQ A + A ++A HG+L Q R + L F++ + L+ATDVAARGLDI+
Sbjct: 280 KKQTADLIAQKMLAAGIEAKAFHGDLGQGAREQVLNDFKQGKIKALVATDVAARGLDIVE 339
Query: 312 VQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
++ V+NY P YVHR+GRT RAG G A+T +++D LL+ +
Sbjct: 340 LKVVVNYEIPFVAEDYVHRIGRTGRAGNTGKAITLYSEDDALLLEEV 386
>gi|94311518|ref|YP_584728.1| RNA helicase [Cupriavidus metallidurans CH34]
gi|93355370|gb|ABF09459.1| RNA helicase [Cupriavidus metallidurans CH34]
Length = 556
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 152/365 (41%), Positives = 228/365 (62%), Gaps = 20/365 (5%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL------Y 62
+LRA GY+KPTPIQA IP+ L G+D+ G+A TG+GKTA FALP ++RLL
Sbjct: 84 ILRALTEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQRLLPLANASA 143
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P R P +R L+LTPTRELA QV+ + + A+ TD+R +V GG+ Q ALR +I
Sbjct: 144 SPARHP-VRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQTDALRRGVEI 202
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+VATPGR++DH++ SV+L + +L+LDEADR+L++GF ++ ++ L P +RQT+LFS
Sbjct: 203 LVATPGRLLDHVQQK-SVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAQRQTLLFS 261
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVR--IRRMREVNQEAVLLSL--- 237
AT + ++ +L L +P+ + A+ S T E VR + ++++ +++A ++ L
Sbjct: 262 ATFSPEIKKLASSYLKQPVTIEV---AR--SNSTNENVRQVVYQVQDGHKQAAVVHLLKQ 316
Query: 238 -CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 296
++ + + I+F +K RL + AA +HG+ TQ +R++ L+ F+ +D
Sbjct: 317 RANEQQSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLDGFKNGTIDA 376
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT-FVTDNDRSLL 355
L+ATDVAARGLDI + VIN+ P YVHR+GRT RAG G A++ FV ND LL
Sbjct: 377 LVATDVAARGLDIPAMPCVINFDLPFSAEDYVHRIGRTGRAGASGDALSIFVPGNDDRLL 436
Query: 356 KAIAK 360
I K
Sbjct: 437 ADIEK 441
>gi|451979881|ref|ZP_21928289.1| ATP-dependent RNA helicase rhlE [Nitrospina gracilis 3/211]
gi|451762901|emb|CCQ89503.1| ATP-dependent RNA helicase rhlE [Nitrospina gracilis 3/211]
Length = 436
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 153/364 (42%), Positives = 218/364 (59%), Gaps = 10/364 (2%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
+ LNL P+LR+ E Y PTPIQ+ IP L GRD+ G A TG+GKTAAFALP L+RL
Sbjct: 14 VSLNLIDPILRSLEEEQYQTPTPIQSESIPHLLQGRDLLGCAQTGTGKTAAFALPLLQRL 73
Query: 61 LYRPKRIPA---IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 117
+P R LIL PTRELAVQ+ + + LV GG+ T Q AL+
Sbjct: 74 -AESNTVPGPKGARALILAPTRELAVQIEESFRVYGRHLKLSRALVYGGVKTFHQIRALK 132
Query: 118 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 177
D++VATPGR++D L ++ LD + + +LDEADR+L++GF ++ + P++RQ
Sbjct: 133 RGVDVLVATPGRLLD-LMEQRALRLDKVEIFVLDEADRMLDMGFLPDVRRIHSALPQKRQ 191
Query: 178 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV-RIRRMREVNQEAVLLS 236
TMLFSATL ++V LI L P+ +S P PST + + +I + + N++A+L S
Sbjct: 192 TMLFSATLPQEVRRLISTFLHDPVHVSVSP----PSTTGKNIAQKILFVDKENKKALLES 247
Query: 237 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 296
L +V++F+ TK A+++ ++A +HGN +Q RL+ALE FR
Sbjct: 248 LLGDAQIERVLVFTRTKHGANQVAKRLNQTRIRAEAIHGNKSQPARLQALEKFRSGKTRV 307
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 356
L+ATD+ ARGLD+ G+ VINY P++ SYVHR+GRTARAG G A++F +R L
Sbjct: 308 LVATDIVARGLDVDGITHVINYELPKEAESYVHRIGRTARAGATGIALSFCDAGERPYLS 367
Query: 357 AIAK 360
I +
Sbjct: 368 RIER 371
>gi|152981130|ref|YP_001352218.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
gi|151281207|gb|ABR89617.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
Length = 513
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 146/366 (39%), Positives = 221/366 (60%), Gaps = 13/366 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L+ +LRA GY PTPIQA IP+ L G D+ G+A TG+GKTA F+LP ++ L+
Sbjct: 40 DFGLAPEILRALSDQGYVHPTPIQAEAIPVVLQGIDVMGAAQTGTGKTAGFSLPIIQLLM 99
Query: 62 YR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
P R P +R LILTPTRELA QV ++ ++ T +R +V GG+ Q A
Sbjct: 100 AHANSSASPARHP-VRALILTPTRELADQVADNVKAYSRHTPLRSVVVFGGVDMAPQTAA 158
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LRS +IV+ATPGR++DH++ +++L +L++DEADR+L++GF ++ ++ L PK+
Sbjct: 159 LRSGVEIVIATPGRLLDHIQQK-TLNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQ 217
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVL 234
RQ ++FSAT + ++ +L L P+ + R + E V +I ++ E ++ +
Sbjct: 218 RQNLMFSATFSPEIKKLAATFLKDPVTIEV----ARSNATAENVTQIVYKVEEGDKGDAV 273
Query: 235 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 294
+ + +VI+FS TK A RL +KA+ +HG+ +QA+R+ ALE F+ +
Sbjct: 274 SYIIRERGLKQVIVFSNTKIGASRLARQLENEGVKASAIHGDKSQAERMAALEAFKNGTI 333
Query: 295 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 354
+ L+ATDVAARGLDI + VINY P + YVHR+GRT RAG G A++ +D D L
Sbjct: 334 EVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLYSDKDARL 393
Query: 355 LKAIAK 360
L I K
Sbjct: 394 LVDIEK 399
>gi|28868793|ref|NP_791412.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213969602|ref|ZP_03397738.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
T1]
gi|28852032|gb|AAO55107.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213925698|gb|EEB59257.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
T1]
Length = 453
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 223/376 (59%), Gaps = 10/376 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 12 EFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 71
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K IR +IL PTRELA Q +E+ +QFT ++ L+ GG K+Q LR +PD
Sbjct: 72 GPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPD 131
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGR+++ L N+ ++DL + VL+LDEADR+L++GFS ++ L C R QTMLF
Sbjct: 132 ILIGTPGRLLEQL-NAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLF 190
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E+I L P L + ++ S +++ V++E VL L +
Sbjct: 191 SATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITAD--HNVHKEQVLNWLLAN 248
Query: 241 TFTSKVIIFSGTKQAAHRLKILFG-LAAL--KAAELHGNLTQAQRLEALELFRKQHVDFL 297
K IIF+ TK A R L+G L AL KA LHG+ Q R A++ ++ +
Sbjct: 249 ETYQKAIIFTNTKAMADR---LYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIM 305
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATDVAARGLD+ G+ VIN+ PR YVHRVGRT RAG +G A++ + D +L+ +
Sbjct: 306 VATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSS 365
Query: 358 IAKRAGSKLKSRIVAE 373
+ + + R++ E
Sbjct: 366 VERYLKQSFERRVIKE 381
>gi|336171342|ref|YP_004578480.1| DEAD/DEAH box helicase [Lacinutrix sp. 5H-3-7-4]
gi|334725914|gb|AEH00052.1| DEAD/DEAH box helicase domain protein [Lacinutrix sp. 5H-3-7-4]
Length = 411
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 146/361 (40%), Positives = 215/361 (59%), Gaps = 9/361 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+RPLLRA GY PT IQ IPL L +D+ SA TG+GKTAAFALP L+ LL
Sbjct: 5 DLKLNRPLLRAIAEKGYDNPTLIQERTIPLVLNKKDVIASAQTGTGKTAAFALPILQ-LL 63
Query: 62 YR----PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 117
Y K +R LI++PTRELA+Q+ + +T++R ++ GG S + Q+ LR
Sbjct: 64 YDKQDAAKNQKKVRALIISPTRELAIQIQENFQDYLIYTNLRSTVIFGGASIEPQKDVLR 123
Query: 118 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 177
DI++ATPGR++D L V+LD + L+LDEAD +L++GF ++ ++ RLCP +Q
Sbjct: 124 KGVDILIATPGRLLD-LHKQDEVNLDYVETLVLDEADLMLDMGFIDDVKKIERLCPAEKQ 182
Query: 178 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 237
+LFSAT+ V++L K L P R+ ++ + + + + + + +++ + L L
Sbjct: 183 ILLFSATMPYKVEQLAKTILNNPKRVEVSQNSSTSTNINQALYYVPKPKKIE---LCLHL 239
Query: 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
T K+IIF TK +L+ KA +HG+ +Q R EAL F+K V+ L
Sbjct: 240 LRNTVKGKIIIFRRTKYGVDKLEKTLLRNNYKADSIHGDKSQTLRQEALNRFKKNEVNIL 299
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
IATDVAARG+DI V VIN+ P +YVHR+GRT RAG G A +F + +++ +K
Sbjct: 300 IATDVAARGIDIENVDAVINFDMPNVPETYVHRIGRTGRAGNTGMAYSFCSADEKEYIKT 359
Query: 358 I 358
I
Sbjct: 360 I 360
>gi|359451210|ref|ZP_09240620.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20480]
gi|358042989|dbj|GAA76869.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20480]
Length = 438
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 148/362 (40%), Positives = 214/362 (59%), Gaps = 5/362 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS+ L+ A GY PTPIQA IP + RD+ +A TG+GKTA F LP +ERL
Sbjct: 6 LGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIERLST 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
PK + +R LIL PTRELA+QV +E+ A+ +++ +V GG+ Q LR D
Sbjct: 66 GPKAKSNHVRALILAPTRELALQVSENVEEYAKHSNVSSFVVYGGVKINPQMQRLRKGVD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR+ID L N +V D + VL+LDEADR+L++GF +I L+ P +RQ ++F
Sbjct: 126 ILVATPGRLID-LHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQNLMF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++D+ L K + P+ +S ++T+ V + + R+ A+L L
Sbjct: 185 SATFSDDIRALAKGLINDPVEISVAAKNTTAKSVTQSVYAVDKGRKT---ALLSHLIRSN 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++FS TK A+RL + A +HGN +Q R++AL+ F+ V L+ATD
Sbjct: 242 DWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+ ARGLDI+ + V+NY P YVHR+GRT RAG G+A++FVT +D L I +
Sbjct: 302 IVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTIDDAVDLYGIERF 361
Query: 362 AG 363
G
Sbjct: 362 IG 363
>gi|167835963|ref|ZP_02462846.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis MSMB43]
Length = 397
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 146/365 (40%), Positives = 227/365 (62%), Gaps = 11/365 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L+ +L+A GY+ PTPIQA IP+ L+GRD+ G+A TG+GKTA+F+LP ++RLL
Sbjct: 15 QFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLL 74
Query: 62 YR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
+ P R P +R LILTPTRELA QV + + A+ T +R +V GG+ Q
Sbjct: 75 PQANTSASPARHP-VRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAE 133
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR +I++ATPGR++DH++ + +L + +L+LDEADR+L++GF ++ ++ L PK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQK-TANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQT+LFSAT + ++ +L L P + S ST+T+ V + E +++A ++
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRDPQTIEVARSNAAASTVTQIVYDVA---EGDKQAAVV 249
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
L +VI+F +K A RL + AA +HG+ +Q++R++AL+ F++ ++
Sbjct: 250 KLIRDRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIE 309
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARGLDI+ + VIN+ P + YVHR+GRT RAG G A++ + N+R L
Sbjct: 310 ALVATDVAARGLDIVELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369
Query: 356 KAIAK 360
I K
Sbjct: 370 ADIEK 374
>gi|410671946|ref|YP_006924317.1| DEAD/DEAH box helicase-like protein [Methanolobus psychrophilus
R15]
gi|409171074|gb|AFV24949.1| DEAD/DEAH box helicase-like protein [Methanolobus psychrophilus
R15]
Length = 408
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 147/361 (40%), Positives = 217/361 (60%), Gaps = 6/361 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+LNL PL RA GY +PTPIQ IP L G+D+ G A TG+GKTAAF LP L+R+
Sbjct: 5 DLNLIDPLQRALTKEGYIEPTPIQVQSIPQLLKGKDLIGIAQTGTGKTAAFVLPILQRMH 64
Query: 62 YRPKRI-PAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
+ K P RVL+L PTRELA Q+ F + +V GG+S Q ++
Sbjct: 65 EKHKHTTPGFPRVLVLAPTRELAAQIGDSFAAYGHFLHFKHTVVFGGVSQVPQFKSITKG 124
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
DI+VATPGR++D L + V L + +LDEADR+L++GF +++ +V + P +RQ++
Sbjct: 125 VDILVATPGRLLD-LMDQGIVKLSGVEFFVLDEADRMLDMGFIKDVNRIVSMLPHKRQSL 183
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
FSAT++ + EL + LT P+R+ P A + ++V + + N++A+LLSL
Sbjct: 184 FFSATMSPQISELTRRLLTDPVRVEVTPQATTVERIEQKVFFVD---QENKDALLLSLLQ 240
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+ + V++F+ TK A+++ + A +HGN +QA R +E FR + L+A
Sbjct: 241 QDHLNCVLVFTRTKHRANKVAQTLNKNRVGADAIHGNKSQAHRTRVMESFRAGELQVLVA 300
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TD+AARG+DI + VINY P + SYVHR+GRTARAG EG A +F ++RS L++I
Sbjct: 301 TDIAARGIDIEDISHVINYDLPNEPESYVHRIGRTARAGAEGTAYSFCAADERSFLRSIE 360
Query: 360 K 360
K
Sbjct: 361 K 361
>gi|153809380|ref|ZP_01962048.1| hypothetical protein BACCAC_03694 [Bacteroides caccae ATCC 43185]
gi|423221053|ref|ZP_17207547.1| hypothetical protein HMPREF1061_04320 [Bacteroides caccae
CL03T12C61]
gi|149127966|gb|EDM19188.1| DEAD/DEAH box helicase [Bacteroides caccae ATCC 43185]
gi|392622292|gb|EIY16424.1| hypothetical protein HMPREF1061_04320 [Bacteroides caccae
CL03T12C61]
Length = 375
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 147/369 (39%), Positives = 224/369 (60%), Gaps = 7/369 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELN++ P+L+A + GY+ PTPIQ IP AL RDI G A TG+GKTA+FA+P ++ L
Sbjct: 5 ELNITEPILKAIKEKGYTVPTPIQEKAIPAALAKRDILGCAQTGTGKTASFAIPIIQHLQ 64
Query: 62 YRPK---RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
K + I+ LILTPTRELA+Q+ I+ +++T +R ++ GG++ + Q LR
Sbjct: 65 VVSKESVKRQGIKALILTPTRELALQISECIDDYSKYTRVRHGVIFGGVNQRPQVDMLRK 124
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
DI+VATPGR++D L N + LD + +LDEADR+L++GF +I ++ PK +QT
Sbjct: 125 GIDILVATPGRLLD-LMNQGHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQT 183
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
+ FSAT+ + + L K L P+++ P + ++ + V + + +E +Q +L+S+
Sbjct: 184 LFFSATMPDTIVTLTKSLLKNPVKIYITPKSSTVDSINQVVYFVEK-KEKSQ--LLISIL 240
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
K V+IFS TK A ++ + G A + + +HGN +QA R AL F+ ++
Sbjct: 241 QKAEDQSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMV 300
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+A+RG+DI + VINY P +YVHR+GRT RAG G A+TF + +R L+ I
Sbjct: 301 ATDIASRGIDISELPMVINYDLPDVPETYVHRIGRTGRAGNTGTALTFCSQEERKLVNDI 360
Query: 359 AKRAGSKLK 367
K G KL
Sbjct: 361 QKLTGKKLN 369
>gi|121604151|ref|YP_981480.1| DEAD/DEAH box helicase [Polaromonas naphthalenivorans CJ2]
gi|120593120|gb|ABM36559.1| DEAD/DEAH box helicase domain protein [Polaromonas
naphthalenivorans CJ2]
Length = 571
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 145/375 (38%), Positives = 223/375 (59%), Gaps = 9/375 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNL+ +L+A GY PTPIQA IP L G D+ G A TG+GKTAAF LP L+RL
Sbjct: 5 ELNLAPAILKAVLEQGYDTPTPIQAQAIPAVLAGGDLLGGAQTGTGKTAAFTLPLLQRLS 64
Query: 62 YRPK-----RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 116
P+ + A+R LI+TPTRELA QV + ++ D+ ++ GG+ Q L
Sbjct: 65 TEPRLTNRRGVNAVRALIMTPTRELAAQVEESVRTYGKYLDLTSMVMFGGVGMGAQIEKL 124
Query: 117 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 176
R DI+VATPGR++DH ++DL + +LILDEADR+L++GF +I +++ L PK++
Sbjct: 125 RRGVDILVATPGRLLDHASQG-TLDLSQVQILILDEADRMLDMGFIHDIKKVLALVPKQK 183
Query: 177 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 236
QT+LFSAT ++++ EL L PL + P +T+ + + R + ++A+L
Sbjct: 184 QTLLFSATFSDEIRELANGLLRNPLSIQVTPRNTTVQRITQTIHPVGRSK---KKALLTH 240
Query: 237 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 296
+ ++ S+V++F+ TK A+ + A + A LHGN +Q R +AL+ F+ +
Sbjct: 241 IINEHNWSQVLVFTRTKFGANNVAEHLTKAGIPAMALHGNKSQTARTQALQGFKNGDIRA 300
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 356
L+ATD+AARG+DI + V+NY P YVHR+GRT RAG G AV+ V ++ ++
Sbjct: 301 LVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGNSGQAVSLVCLDEEGFMQ 360
Query: 357 AIAKRAGSKLKSRIV 371
I + +++ +V
Sbjct: 361 DIERFTKQNIENIVV 375
>gi|146284249|ref|YP_001174402.1| DEAD/DEAH box helicase [Pseudomonas stutzeri A1501]
gi|386022659|ref|YP_005940684.1| DEAD/DEAH box helicase [Pseudomonas stutzeri DSM 4166]
gi|145572454|gb|ABP81560.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas stutzeri
A1501]
gi|327482632|gb|AEA85942.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri DSM 4166]
Length = 609
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 148/367 (40%), Positives = 216/367 (58%), Gaps = 19/367 (5%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL- 61
L LS L A EA GY++PTP+Q IP L GRD+ +A TG+GKT FALP LE L
Sbjct: 6 LGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLELLFP 65
Query: 62 ---------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 112
Y PK+ RVL+LTPTRELA QVH + A+ ++ ++ GG+ Q
Sbjct: 66 GGHPDREHRYGPKQP---RVLVLTPTRELAAQVHDSFKVYARDLPLKSAVIFGGVGMNPQ 122
Query: 113 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172
A+ D++VA PGR++D L N ++DL + +L+LDEADR+L++GF ++ +++
Sbjct: 123 IQAVAKGIDVLVACPGRLLD-LANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAKL 181
Query: 173 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMREVNQE 231
P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+ ++
Sbjct: 182 PAKRQNLLFSATFSKDITDLAAKLLQNPERIEVTP----PNTTVERIEQRVFRVASSHKR 237
Query: 232 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 291
A+L L ++ +V++F+ TK A+RL L AA +HGN +Q R +AL F+
Sbjct: 238 ALLAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKA 297
Query: 292 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
V L+ATD+AARGLDI + V+N+ P YVHR+GRT RAGR G A++ V ++
Sbjct: 298 NQVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357
Query: 352 RSLLKAI 358
LLK I
Sbjct: 358 EKLLKGI 364
>gi|149926712|ref|ZP_01914972.1| Helicase [Limnobacter sp. MED105]
gi|149824641|gb|EDM83857.1| Helicase [Limnobacter sp. MED105]
Length = 539
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 153/361 (42%), Positives = 218/361 (60%), Gaps = 14/361 (3%)
Query: 11 RACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL------YRP 64
+A +A GY++PTPIQA IP+ +TG D+ G+A TG+GKTA F+LP L RL+ P
Sbjct: 33 KAIDAQGYTQPTPIQAKAIPVVMTGVDVMGAAQTGTGKTAGFSLPILNRLMPLATENTSP 92
Query: 65 KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVV 124
R P +R LILTPTRELA QV + + A+FT +R +V GG+ Q LR ++V+
Sbjct: 93 ARHP-VRALILTPTRELADQVAANVHTYAKFTPLRSTVVYGGVDINPQIQTLRRGVELVI 151
Query: 125 ATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 184
ATPGR++DH++ S++L + VL+LDEADR+L++GF ++ ++ L PK RQ +LFSAT
Sbjct: 152 ATPGRLLDHVQQK-SINLGQVQVLVLDEADRMLDMGFLPDLQRIINLLPKTRQNLLFSAT 210
Query: 185 LTEDVDELIKLSLTKPLRLSADPSAKRPSTL--TEEVVRIRRMREVNQEAVLLSLCSKTF 242
+ ++ +L K + P + A+R +T ++V+ E + AV + SK
Sbjct: 211 FSPEIQKLAKSFMVSPTLIEV---ARRNATSENIKQVIFALDSEEDKRMAVCHLIQSKAL 267
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
S+VI+FS TK RL + + +HG+ TQ +R ++LE F+ V L+ATDV
Sbjct: 268 -SQVIVFSNTKLGTARLARHLEKEGVSSTAIHGDKTQIERTKSLEAFKAGEVTVLVATDV 326
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
AARGLDI + VINY P YVHR+GRT RAG +G A +FV D LK I K
Sbjct: 327 AARGLDIADLPCVINYDLPTTPEDYVHRIGRTGRAGAKGTAYSFVVKRDERALKDIEKLI 386
Query: 363 G 363
G
Sbjct: 387 G 387
>gi|392556514|ref|ZP_10303651.1| ATP-dependent RNA helicase [Pseudoalteromonas undina NCIMB 2128]
Length = 465
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 149/362 (41%), Positives = 215/362 (59%), Gaps = 5/362 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS+ L+ A GY PTPIQA IP + RD+ +A TG+GKTA F LP +ERL
Sbjct: 6 LGLSQSLVNAVLEKGYETPTPIQAQAIPAIIARRDVMAAAQTGTGKTAGFTLPLIERLSS 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K + +R LILTPTRELA+QV +E+ A+ +++ +V GG+ Q LR D
Sbjct: 66 GTKAKSNHVRALILTPTRELALQVSENVEEYAKHSNVSSFVVYGGVKINPQMQRLRKGVD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR+ID L N +V D + VL+LDEADR+L++GF +I L+ P++RQ ++F
Sbjct: 126 ILVATPGRLID-LHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPEKRQNLMF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++D+ L K + P+ +S ++T+ V + + R+ A+L L
Sbjct: 185 SATFSDDIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKARKT---ALLSHLIRSN 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++FS TK A+RL + A +HGN +Q R++ALE F+ V L+ATD
Sbjct: 242 DWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALEGFKSGEVRVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+ ARGLDI+ + V+NY P YVHR+GRT RAG G+A++FVT +D L I +
Sbjct: 302 IVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTVDDAVDLYGIERF 361
Query: 362 AG 363
G
Sbjct: 362 IG 363
>gi|387824537|ref|YP_005824008.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida 3523]
gi|332184003|gb|AEE26257.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida 3523]
Length = 445
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 144/366 (39%), Positives = 220/366 (60%), Gaps = 5/366 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ + A E GY+KPTPIQA IPL L G D+ SA TG+GKTA F LP ++RLL
Sbjct: 5 DLGLNPLICSALEKKGYTKPTPIQAKAIPLVLKGSDVMASAQTGTGKTAGFTLPIIQRLL 64
Query: 62 YRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+PK + I+ LILTPTRELA Q+ I+ A T IR +V GG+S Q LR
Sbjct: 65 DQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVVFGGVSINPQMMKLRKGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
+I++ATPGR++D L + ++ D L +LDEADR+L++GF ++ ++ +L PK+ QT++
Sbjct: 125 EILIATPGRLLD-LYSQNALKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQTLM 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT + ++ L L P +SAD +T+++ + + ++N L+SL
Sbjct: 184 FSATFSPEIKNLANDFLNNPQSVSADVVNTTVKKITQKIYTLDKSTKIN---ALISLIKD 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++FS TK A+++ A + ++ +HGN +Q R +AL F+ + ++ L+AT
Sbjct: 241 QDLHQVLVFSRTKHGANKISEKLNNAGITSSAIHGNKSQTARTKALADFKSKEINVLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARG+DI + VIN P YVHR+GRT RAG++G A++ V+ ++ L I
Sbjct: 301 DIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQDGLAISLVSADEVESLSNIEH 360
Query: 361 RAGSKL 366
G L
Sbjct: 361 LIGHLL 366
>gi|91794376|ref|YP_564027.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
gi|91716378|gb|ABE56304.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
Length = 496
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 147/362 (40%), Positives = 217/362 (59%), Gaps = 5/362 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL- 61
L LS LL+A GY PT IQA IP L G+D+ +A TG+GKTA F LP LE L
Sbjct: 6 LGLSAALLKAIAKQGYDTPTAIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLEILSK 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P + +R L+LTPTRELA QV +E ++ +V GG+S Q AL+ D
Sbjct: 66 GKPAQRGQVRALVLTPTRELAAQVADSVETYGHNLPLKSAVVFGGVSIVPQIAALKQGVD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++D L N ++ L +L+LDEADR+L++GF +I +++ + PK+RQ ++F
Sbjct: 126 ILVATPGRLLD-LCNQRALSFSTLEILVLDEADRMLDMGFIRDIRKVLAMLPKQRQNLMF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++D+ EL K + P+ +S P +T+T+ V + + ++ +VL+ L
Sbjct: 185 SATFSDDIRELAKGLVNNPVEISVTPRNATANTVTQWVTPVG---QSDKTSVLIDLIKDN 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++FS TK A+R+ A++KAA +HGN +Q R +AL F+ V ++ATD
Sbjct: 242 NWQQVLVFSRTKHGANRIAKNLEAASIKAAAIHGNKSQGARTKALADFKAGKVQVMVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARG+DI + V+N+ P YVHR+GRT RAG G AV+ V D + LL I +
Sbjct: 302 IAARGIDIDQLPFVVNFDLPNVSEDYVHRIGRTGRAGASGQAVSLVADEEVKLLHDIERL 361
Query: 362 AG 363
G
Sbjct: 362 IG 363
>gi|89074254|ref|ZP_01160744.1| putative ATP-dependent RNA helicase, DEAD box family protein
[Photobacterium sp. SKA34]
gi|89049958|gb|EAR55492.1| putative ATP-dependent RNA helicase, DEAD box family protein
[Photobacterium sp. SKA34]
Length = 427
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 152/378 (40%), Positives = 223/378 (58%), Gaps = 18/378 (4%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
LNL LL+A LGYS PT +Q IPLAL G D+ A TG+GKTAAF LP L+RL+
Sbjct: 6 LNLHPNLLKALTDLGYSTPTDVQQQAIPLALKGDDVMAGAQTGTGKTAAFTLPLLQRLMT 65
Query: 63 RPKRIPA--------------IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 108
P + IR LILTPTRELA QV I A++T+I+ + GG S
Sbjct: 66 LPSQAEQVSTAVENNQKSRNKIRALILTPTRELAQQVFDSITTYAKYTEIKVAVAYGGTS 125
Query: 109 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 168
+Q AL + +I+VATPGR++DH+ N SV L ++ +LDEADR+L++GF +I +
Sbjct: 126 MNVQVKALNAGAEILVATPGRLLDHVFNG-SVSLSEVETFVLDEADRMLDMGFIVDIQRI 184
Query: 169 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREV 228
++ P RQT+ FSAT ++ V +L LT P + P+ T+ + V + + R+
Sbjct: 185 MKRMPAERQTLFFSATFSKQVKKLAFDILTNPKMVEVTPANTAAETVEQIVYPVDKHRKA 244
Query: 229 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALEL 288
A L+ S+ + +V++F+ TKQ + +L GL +KA+ ++G+ +Q R AL+
Sbjct: 245 ELLAYLIG--SRNW-RQVLVFTKTKQGSDQLAKDLGLDGIKASSINGDKSQGARQRALDD 301
Query: 289 FRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 348
F+ L+ATDVAARGLDI ++ V+N+ P YVHR+GRT RAG G+A+T ++
Sbjct: 302 FKSGKTRVLVATDVAARGLDIEQLEYVVNFDMPFKAEDYVHRIGRTGRAGMTGHAITLMS 361
Query: 349 DNDRSLLKAIAKRAGSKL 366
++ LKAI + S+L
Sbjct: 362 LDEEWALKAIEELLDSRL 379
>gi|405360716|ref|ZP_11025657.1| ATP-dependent RNA helicase RhlE [Chondromyces apiculatus DSM 436]
gi|397090405|gb|EJJ21269.1| ATP-dependent RNA helicase RhlE [Myxococcus sp. (contaminant ex DSM
436)]
Length = 503
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 148/359 (41%), Positives = 216/359 (60%), Gaps = 6/359 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L LLRA +A GY+ PTPIQ IP AL G+D+ G A TG+GKTAAFALP L+RL
Sbjct: 5 ELQLQETLLRAVKAEGYTTPTPIQQKAIPHALAGKDVLGVAQTGTGKTAAFALPILQRLS 64
Query: 62 YR--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
+ P +R L+LTPTRELA QV + +R ++ GG+ Q AL+
Sbjct: 65 AKAPPGGARPVRCLVLTPTRELAGQVGESFATYGKNLPLRHTVIFGGVGQNPQVQALQRG 124
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
D++VATPGR++D L V L L V +LDEADR+L++GF ++ +++ P +RQT+
Sbjct: 125 VDVLVATPGRLLD-LMEQGCVSLRSLEVFVLDEADRMLDMGFIHDVRRVIKALPSKRQTL 183
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
FSATL D+ +L + LT P+R+ P++ T++++V + R + + +L L
Sbjct: 184 FFSATLPPDIVDLARSILTDPVRVEVTPASSTAETVSQQVYFVEREQ---KRGLLTHLLK 240
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+ S+ ++F+ TK A+R+ A + +A +HGN +Q R AL+ FR + L+A
Sbjct: 241 EGNISRALVFTRTKHGANRVAKQLEGAGVSSAAIHGNKSQNARERALDEFRSGTLRVLVA 300
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
TD+AARG+DI G+ V+NY P YVHR+GRT RAG G AV+F +R+ L+ I
Sbjct: 301 TDIAARGIDIDGLSYVVNYDLPNVPEQYVHRIGRTGRAGASGTAVSFCDAEERAYLRDI 359
>gi|332285242|ref|YP_004417153.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
gi|330429195|gb|AEC20529.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
Length = 455
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 220/366 (60%), Gaps = 13/366 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L +L+A GY+ PTPIQA +P+ + GRD+ G+A TG+GKTAAF LP L RL+
Sbjct: 16 DFGLHPSVLQAVTETGYTTPTPIQAQAMPMVMDGRDVMGAAQTGTGKTAAFTLPILHRLM 75
Query: 62 Y------RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
P R P +R LILTPTRELA QV + A+FT +R +V GG+ Q A
Sbjct: 76 QFANTSASPARHP-VRALILTPTRELADQVADSVTTYAKFTPLRSTVVFGGVDIGPQRDA 134
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR +I++ATPGR++DH+ +V+L + +L+LDEADR+L++GF ++ +VRL P +
Sbjct: 135 LRRGCEILIATPGRLLDHVEQK-NVNLSQVGILVLDEADRMLDMGFLPDLDRIVRLLPAK 193
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVL 234
RQ +LFSAT + ++ +L + L+ P + A R +T + V +I + ++ A +
Sbjct: 194 RQGLLFSATFSNEIRKLGRSYLSNPAEIEV---AARNAT-ADTVTQIAYPLAGSDKRAAV 249
Query: 235 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 294
+ L ++VI+FS TK RL +KA +HG+ +Q R++AL+ F+ +
Sbjct: 250 VHLVKSRGFNQVIVFSNTKIGTSRLARELVRDGVKAESIHGDKSQLDRMKALDAFKAGEL 309
Query: 295 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 354
+ L+ATDVAARGLD+ GV VINY P + YVHR+GRT RAG G A+ F T +
Sbjct: 310 EVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGNTGEAIAFFTPEEERY 369
Query: 355 LKAIAK 360
L I K
Sbjct: 370 LLDIEK 375
>gi|422667305|ref|ZP_16727169.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aptata
str. DSM 50252]
gi|330977878|gb|EGH77781.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 445
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 152/373 (40%), Positives = 218/373 (58%), Gaps = 4/373 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
E L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L RL+
Sbjct: 4 EFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI 63
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K IR +IL PTRELA Q +E+ +QFT ++ L+ GG K+Q LR +PD
Sbjct: 64 GPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPD 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGR+++ L N+ ++DL + VL+LDEADR+L++GFS ++ L C R QTMLF
Sbjct: 124 ILIGTPGRLLEQL-NAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLF 182
Query: 182 SATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
SAT + E+I L P L + ++ S +++ V++E VL L +
Sbjct: 183 SATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITAD--HNVHKEQVLNWLLAN 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
K IIF+ T+ A RL KA LHG+ Q R A++ ++ ++AT
Sbjct: 241 ETYQKAIIFTNTRAMADRLYCRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVAARGLD+ G+ VIN+ PR YVHRVGRT RAG +G A++ + D +L+ ++ +
Sbjct: 301 DVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVER 360
Query: 361 RAGSKLKSRIVAE 373
+ R++ E
Sbjct: 361 YLKQSFERRVIKE 373
>gi|429765433|ref|ZP_19297729.1| putative ATP-dependent RNA helicase RhlE [Clostridium celatum DSM
1785]
gi|429186393|gb|EKY27337.1| putative ATP-dependent RNA helicase RhlE [Clostridium celatum DSM
1785]
Length = 426
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 136/367 (37%), Positives = 224/367 (61%), Gaps = 6/367 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELN+ P+L+A GY KPT IQ IP+ L GRDI G A TG+GKTAAFA+P ++ ++
Sbjct: 5 ELNVIEPVLKAISEAGYEKPTEIQENSIPVVLKGRDILGCAQTGTGKTAAFAIPIIQNIV 64
Query: 62 YRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
+I+ LI+ PTRELA+Q+ A++ DI+ ++ GG++ Q + +
Sbjct: 65 TAKGNSKERSIKALIVAPTRELAIQIEENFTIYAKYLDIKNTVIFGGVNQTSQVRKINAG 124
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
D++VATPGR++D L N +DL ++ +LDEADR+L++G ++ +++ PK RQ +
Sbjct: 125 VDVLVATPGRLLD-LVNQRHIDLSNVKYFVLDEADRMLDMGMIHDVKKIISKLPKERQNL 183
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
LFSAT+ ++V +L+ L P+++ P + +++ V + + N++++L+ L
Sbjct: 184 LFSATMPKEVTKLVNSILKNPVKVEVQPVSSTAEIISQGVYFVPKK---NKKSLLIHLLK 240
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
VI+FS TK A+++ A +++A +HGN +Q QR AL F++ ++ L+A
Sbjct: 241 DESIKSVIVFSRTKHGANKIAKDLEKAGIQSAAIHGNKSQNQRQLALNNFKEGNIRVLVA 300
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TD+AARG+DI + VINY P +YVHR+GRT RAG G A+TF + ++++ ++I
Sbjct: 301 TDIAARGIDIDELSHVINYDLPDVAETYVHRIGRTGRAGASGVAITFCDEEEKAMFRSIE 360
Query: 360 KRAGSKL 366
K G +
Sbjct: 361 KIIGKSI 367
>gi|163750900|ref|ZP_02158133.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
gi|161329324|gb|EDQ00321.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
Length = 492
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 146/358 (40%), Positives = 215/358 (60%), Gaps = 7/358 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A GY PTPIQA IP L G+D+ +A TG+GKTA F LP LE LL
Sbjct: 19 LGLSAPILKAVANKGYETPTPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE-LLS 77
Query: 63 RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
R R A +R L+LTPTRELA QV ++ ++ ++ +V GG+ Q + L
Sbjct: 78 RGNRAQAKKVRALVLTPTRELAAQVAESVDTYGKYLPLKSAVVFGGVGIGPQISKLGKGV 137
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DI+VATPGR++D L N +V+ + L VL+LDEADR+L++GF +I +++R P +RQ ++
Sbjct: 138 DILVATPGRLLD-LYNQGAVNFNQLEVLVLDEADRMLDMGFIHDIKKILRALPAKRQNLM 196
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++D+ +L K + P+ +S P R +T I + + + A L+ L +
Sbjct: 197 FSATFSDDIRKLAKGLVNNPVEISVTP---RNATAKSVEQYIYMVDQKQKTAALIHLIKQ 253
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++FS TK A+R+ + AA +HGN +Q R +AL F+ V L+AT
Sbjct: 254 NDWQQVLVFSRTKHGANRIAKNLEAKDITAAAIHGNKSQGARTKALANFKSGLVRVLVAT 313
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
D+AARG+DI + V+N+ P YVHR+GRT RAG G AV+ V+ ++ LL+ I
Sbjct: 314 DIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSADESKLLRDI 371
>gi|326911793|ref|XP_003202240.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Meleagris gallopavo]
Length = 447
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 146/369 (39%), Positives = 214/369 (57%), Gaps = 8/369 (2%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 68
L AC+ LG+ PT IQ IP+AL GRDI G A TGSGKT AFALP L+ LL P+R+
Sbjct: 30 LCEACDQLGWKIPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPILQALLDAPQRLF 89
Query: 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 128
A L+LTPTRELA Q+ E + + ++VGG+ + Q AL P I++ATPG
Sbjct: 90 A---LVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPHIIIATPG 146
Query: 129 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 188
R++DHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LFSAT+T+
Sbjct: 147 RLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKQ 206
Query: 189 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSKTFTSKVI 247
V +L + +L P++ + + L + + I + ++ +L L +F +
Sbjct: 207 VQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSYLVYILNELAGNSF----M 262
Query: 248 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 307
+F T R +L A LHG ++Q +RL +L F+ + L+ATDVA+RGL
Sbjct: 263 VFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLATDVASRGL 322
Query: 308 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 367
DI V VIN+ P Y+HRVGRTARAGR G ++TFVT D L + I G KL
Sbjct: 323 DIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEHLIGKKLP 382
Query: 368 SRIVAEQSI 376
+ + E+ +
Sbjct: 383 AFPMQEEEV 391
>gi|139438943|ref|ZP_01772403.1| Hypothetical protein COLAER_01409 [Collinsella aerofaciens ATCC
25986]
gi|133775654|gb|EBA39474.1| DEAD/DEAH box helicase [Collinsella aerofaciens ATCC 25986]
Length = 749
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 159/374 (42%), Positives = 216/374 (57%), Gaps = 31/374 (8%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL- 60
EL LS +LRA E LGY+ PTP+QA IP+ L GRD+ +A TG+GKTAAF LPT+ L
Sbjct: 50 ELGLSDEMLRAIENLGYTAPTPVQAGSIPVVLEGRDLLAAAQTGTGKTAAFLLPTMNNLE 109
Query: 61 -LYRPK---------------------RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI 98
+ PK R P + L++TPTRELA Q+ + KIA T
Sbjct: 110 HIAPPKPVRERGGRNRRRGAKKPEGNGRGPVM--LVITPTRELAQQIDEVAGKIADVTGH 167
Query: 99 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 158
VVGG+S K Q AL+ DI+VATPGR++D + + LD++ VL+LDEADR+L+
Sbjct: 168 VAVTVVGGVSYKPQTAALKYGCDILVATPGRLVDLIEQG-ACHLDEVKVLVLDEADRMLD 226
Query: 159 LGFSAEIHELVRLCPKRRQTMLFSATLTED-VDELIKLSLTKPLRLSADPSAKRPSTLTE 217
+GF + +VR P RQT+LFSATL E+ V E+ L ++ P R+ P+ T+ +
Sbjct: 227 MGFLPAVRRIVRETPAERQTLLFSATLDEEAVGEITDL-VSDPARVEIAPATSTADTVDQ 285
Query: 218 EVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNL 277
V + + N +L K + I+F TK A +KAA +HGN
Sbjct: 286 FVFPVSIEAKNN---LLPEFLKKEGPERTIVFMRTKHRADSCCRRLERKGIKAAAIHGNR 342
Query: 278 TQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 337
+QAQR AL FR VD L+ATDV ARG+DI V+ V+N+ P + T Y+HR+GRT RA
Sbjct: 343 SQAQRERALSAFRDGTVDVLVATDVLARGIDISDVRYVVNFDVPAEPTDYIHRIGRTGRA 402
Query: 338 GREGYAVTFVTDND 351
G G+A+TFVT+ D
Sbjct: 403 GELGWAITFVTEQD 416
>gi|398852711|ref|ZP_10609359.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM80]
gi|398243285|gb|EJN28876.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM80]
Length = 445
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 153/359 (42%), Positives = 215/359 (59%), Gaps = 8/359 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L PLLR+ E LGY PTP+QA IP L GRD+ +A TG+GKTA FALP L+ L
Sbjct: 6 LGLIEPLLRSLETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQLLSM 65
Query: 63 RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
++ A R LIL PTRELA QVH + + A+ +R V GG+S Q LR
Sbjct: 66 EGPKVAANSARALILVPTRELAEQVHESVRQYAENLPLRTYAVYGGVSINPQMMKLRGGV 125
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D++VATPGR+ID R + ++ LD L L+LDEADR+L+LGFS E+ + R+ PK+RQT+L
Sbjct: 126 DVLVATPGRLIDLFRQN-ALKLDQLQTLVLDEADRMLDLGFSEELANIYRMLPKKRQTLL 184
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++D+ L L PL + P +T+ + +V + + R+ + + L K
Sbjct: 185 FSATFSDDIRLLAGQMLNDPLSIEVSPRNVAANTVKQWIVTVDKKRKAE---LFVHLMRK 241
Query: 241 TFTSKVIIFSGTKQAAHRL-KILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+V++F+ T+ L + L GL + A +HG+ QA R AL+ F+ V L+A
Sbjct: 242 NKWKQVLVFAKTRNGVDALVEKLQGLG-VNADGIHGDKPQATRQRALDRFKLSEVQILVA 300
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
TDVAARGLDI + VIN+ P Y+HR+GRT RAG G A++ V ++ ++L AI
Sbjct: 301 TDVAARGLDIEDLPLVINFDLPIVAEDYIHRIGRTGRAGATGEAISLVCADEVNMLSAI 359
>gi|71908923|ref|YP_286510.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, partial
[Dechloromonas aromatica RCB]
gi|71848544|gb|AAZ48040.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Dechloromonas aromatica RCB]
Length = 507
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 148/364 (40%), Positives = 218/364 (59%), Gaps = 9/364 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ LLRA GY+KPTPIQA IPL ++G+DI G A TG+GKTAAF LP L+R+L
Sbjct: 27 DLGLAPELLRAVLDEGYTKPTPIQAQAIPLVISGKDIMGGAQTGTGKTAAFTLPILQRIL 86
Query: 62 YRPKRIPA-----IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 116
P+ +R LIL PTRELA+QV ++ ++ T IR GG+ + Q L
Sbjct: 87 PFASSSPSPAKHPVRALILAPTRELAMQVFESVKTYSKHTPIRAMCAYGGVDIRPQIAEL 146
Query: 117 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 176
+ +I+VATPGR++DH+ N SV + + L+LDEADR+L++GF ++ ++ + P +R
Sbjct: 147 KKGVEILVATPGRLLDHVENK-SVSFNSVQALVLDEADRMLDMGFVPDVTRILNMLPAQR 205
Query: 177 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 236
Q++LFSAT +E++ +L L P+ + + T+T R+ + E + +L
Sbjct: 206 QSLLFSATFSEEIKKLADTMLKSPILIEVARRNQVSDTITH---RVHPVSEYGKRGLLTK 262
Query: 237 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 296
L + I+F TKQ RL A +KA +HG+ +Q +R++ALE F+ D
Sbjct: 263 LLKSGEIRQCIVFCRTKQGCSRLTRELQRAGIKADAIHGDKSQLERIKALEAFKGGETDA 322
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 356
LIATDVAARGLD+ + VINY P YVHR+GRT RAG++G A++ V+ ++ L
Sbjct: 323 LIATDVAARGLDVDDLPYVINYELPHTPEDYVHRIGRTGRAGKKGNAISLVSAHEVCYLV 382
Query: 357 AIAK 360
I K
Sbjct: 383 DIEK 386
>gi|330817865|ref|YP_004361570.1| ATP-dependent RNA helicase [Burkholderia gladioli BSR3]
gi|327370258|gb|AEA61614.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3]
Length = 485
Score = 269 bits (687), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 145/365 (39%), Positives = 225/365 (61%), Gaps = 11/365 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L+ +L+A GY+ PTPIQA IP+ L+GRD+ G+A TG+GKTA+F+LP ++RLL
Sbjct: 15 QFGLAPDILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLL 74
Query: 62 YR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
+ P R P +R LILTPTRELA QV + + A+ T +R +V GG+ Q
Sbjct: 75 PQANSSASPARHP-VRALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNSQMAE 133
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR +I++ATPGR++DH++ + +L + +L+LDEADR+L++GF ++ ++ L PK+
Sbjct: 134 LRRGVEILIATPGRLLDHVQQK-TANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKQ 192
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQT+LFSAT + ++ +L L+ P + S + +T+ V I E +++A ++
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLSNPQTIEVARSNATATNVTQVVYEIA---EGDKQAAVV 249
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
L +VI+F +K A RL + A +HG+ +Q +R++AL+ F++ V+
Sbjct: 250 KLIRDRSLKQVIVFCNSKIGASRLARQLERDGVVATAIHGDRSQNERMQALDAFKRGEVE 309
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARGLDI + VIN+ P + YVHR+GRT RAG G A++ + N+R L
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369
Query: 356 KAIAK 360
I K
Sbjct: 370 ADIEK 374
>gi|269798436|ref|YP_003312336.1| DEAD/DEAH box helicase [Veillonella parvula DSM 2008]
gi|416998583|ref|ZP_11939344.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella parvula
ACS-068-V-Sch12]
gi|269095065|gb|ACZ25056.1| DEAD/DEAH box helicase domain protein [Veillonella parvula DSM
2008]
gi|333977481|gb|EGL78339.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella parvula
ACS-068-V-Sch12]
Length = 515
Score = 269 bits (687), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 145/368 (39%), Positives = 219/368 (59%), Gaps = 7/368 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L +S P+LRA +G+ +PTPIQ IP+A++G+D+ G A TG+GKTAAF LP LER+
Sbjct: 7 QLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVD 66
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + +V+IL+PTRELA+QV + K+AQ+T+I + GG Q AL+ P
Sbjct: 67 GNERHV---QVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKNPQ 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DH+ S+ D + V++LDEAD +L +GF +I++++ P+ QT+LF
Sbjct: 124 IIVATPGRLMDHMDRG-SIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTLLF 182
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ + + +L + LT+P + P+ + + + ++ ++ + VL L
Sbjct: 183 SATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFD---VLCRLFDIQ 239
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
IIF+ TK+ + A +HG+L+Q +R + FR+ +D L+ATD
Sbjct: 240 TPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATD 299
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV V NY P+D SY HRVGRT RAG+ G A TFV + L AI +
Sbjct: 300 VAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHAIERL 359
Query: 362 AGSKLKSR 369
K+ R
Sbjct: 360 TKRKIARR 367
>gi|424925048|ref|ZP_18348409.1| Superfamily II DNA and RNA helicase [Pseudomonas fluorescens R124]
gi|404306208|gb|EJZ60170.1| Superfamily II DNA and RNA helicase [Pseudomonas fluorescens R124]
Length = 446
Score = 269 bits (687), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 153/359 (42%), Positives = 215/359 (59%), Gaps = 8/359 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L PLLR+ E LGY PTP+QA IP L GRD+ +A TG+GKTA FALP L+ L
Sbjct: 6 LGLIEPLLRSLEKLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQLLAM 65
Query: 63 RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
++ A R LIL PTRELA QVH + + A+ +R V GG+S Q LR
Sbjct: 66 EGPKVAANSARALILVPTRELAEQVHESVRQYAENLPLRTYAVYGGVSINPQMMKLRGGV 125
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D++VATPGR+ID R + ++ LD L L+LDEADR+L+LGFS E+ + R+ PK+RQT+L
Sbjct: 126 DVLVATPGRLIDLFRQN-ALKLDQLQTLVLDEADRMLDLGFSEELANIYRMLPKKRQTLL 184
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++D+ L L PL + P +T+ + VV + + R + + + L K
Sbjct: 185 FSATFSDDIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVTVDKKR---KPELFVHLMRK 241
Query: 241 TFTSKVIIFSGTKQAAHRL-KILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+V++F+ T+ L + L GL + A +HG+ QA R AL+ F+ V L+A
Sbjct: 242 NKWKQVLVFAKTRNGVDALVEKLQGLG-INADGIHGDKPQATRQRALDRFKLSEVQILVA 300
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
TDVAARGLDI + V+N+ P Y+HR+GRT RAG G A++ V ++ ++L AI
Sbjct: 301 TDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGATGEAISLVCADEVNMLSAI 359
>gi|313893137|ref|ZP_07826714.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral
taxon 158 str. F0412]
gi|313442490|gb|EFR60905.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral
taxon 158 str. F0412]
Length = 523
Score = 269 bits (687), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 145/368 (39%), Positives = 219/368 (59%), Gaps = 7/368 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L +S P+LRA +G+ +PTPIQ IP+A++G+D+ G A TG+GKTAAF LP LER+
Sbjct: 7 QLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVD 66
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + +V+IL+PTRELA+QV + K+AQ+T+I + GG Q AL+ P
Sbjct: 67 GNERHV---QVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKNPQ 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DH+ S+ D + V++LDEAD +L +GF +I++++ P+ QT+LF
Sbjct: 124 IIVATPGRLMDHMDRG-SIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTLLF 182
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ + + +L + LT+P + P+ + + + ++ ++ + VL L
Sbjct: 183 SATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFD---VLCRLFDIQ 239
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
IIF+ TK+ + A +HG+L+Q +R + FR+ +D L+ATD
Sbjct: 240 TPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATD 299
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV V NY P+D SY HRVGRT RAG+ G A TFV + L AI +
Sbjct: 300 VAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHAIERL 359
Query: 362 AGSKLKSR 369
K+ R
Sbjct: 360 TKRKISRR 367
>gi|198413641|ref|XP_002129468.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
isoform 1 [Ciona intestinalis]
Length = 449
Score = 269 bits (687), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 146/364 (40%), Positives = 214/364 (58%), Gaps = 6/364 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L + L C+ LG+ KP+ IQ IP+AL G D+ G A TGSGKT AF +P L+ LL
Sbjct: 25 LGVVDVLCETCDKLGWKKPSKIQEEAIPVALQGNDVIGLAETGSGKTGAFCIPVLQALLE 84
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P+R+ A L+LTPTRELA Q+ + + I+ C+VVGG+ Q+ L P +
Sbjct: 85 NPQRLFA---LVLTPTRELAFQIEEQFKALGSAIGIKTCVVVGGVDMMGQQIILAKKPHV 141
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
VVATPGR++DHL + L + L+LDEADR+L + F +E+ ++++ P+ R+T LFS
Sbjct: 142 VVATPGRLVDHLEKTKGFTLRSIKFLVLDEADRILNMDFESELDTILKVIPRERRTFLFS 201
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
AT+T V +L + +LTKP++ + + + T+ + + +++ L ++ ++
Sbjct: 202 ATMTGKVKKLQRAALTKPVKCAVN---NKYHTVDKLFQYYLFLPSKDKDCYLAAVVNELA 258
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
+ +IIF GT R ++ + A LHG ++QA+RL AL F+ L+ATDV
Sbjct: 259 GNAMIIFCGTCANTQRTALILRNLGISAVPLHGQMSQAKRLGALNKFKSATKSILVATDV 318
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362
A+RGLDI V VIN P Y+HRVGRTARAGR G +VTFVT D L + I +
Sbjct: 319 ASRGLDIPHVDVVINMDVPARSKDYIHRVGRTARAGRFGKSVTFVTQYDVELYQRIEELI 378
Query: 363 GSKL 366
G KL
Sbjct: 379 GKKL 382
>gi|325108112|ref|YP_004269180.1| DEAD/DEAH box helicase [Planctomyces brasiliensis DSM 5305]
gi|324968380|gb|ADY59158.1| DEAD/DEAH box helicase domain protein [Planctomyces brasiliensis
DSM 5305]
Length = 475
Score = 269 bits (687), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 147/367 (40%), Positives = 228/367 (62%), Gaps = 6/367 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+LNL P+ RA +A Y+ PTPIQA IP L GRDI GSA TG+GKTAAFALP L+ L
Sbjct: 6 DLNLIAPIQRAIKAQNYTTPTPIQAQTIPEILNGRDILGSAQTGTGKTAAFALPILDYLG 65
Query: 62 YRPKR-IPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
+ +R IP VL+L PTRELA+QV + +R L+ GG++ Q L
Sbjct: 66 RQNRRPIPNEPTVLVLVPTRELAIQVGDSFATYGRHLRVRHALIYGGVNQFRQVRDLNRG 125
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
I+VATPGR++D L N +DL L + +DEADR++++GF ++ +++R P+ RQ++
Sbjct: 126 VHILVATPGRLLD-LMNQGHIDLSRLELFAVDEADRMMDMGFLPDLKKIIREIPQERQSL 184
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
FSATL ++EL + LT P+ ++ DP + + + ++ + + +++ +LL + +
Sbjct: 185 FFSATLPPKINELSRELLTDPVSVTIDPEVRSVEAIEQSLIYVDQQ---SKKDLLLDILN 241
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+ + ++F+ TK A+RL+ + + A +HGN +Q R +AL FR + V L+A
Sbjct: 242 EEGIGQTVVFTKTKFCANRLEEQLRKSGVSAIAIHGNKSQNARQKALLAFRNEKVKVLVA 301
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVAARG+D+ GV VIN+ P + SYVHR+GRT RAG G A++F ++ +R+ L+AI
Sbjct: 302 TDVAARGIDVDGVTHVINFELPHEPESYVHRIGRTGRAGASGIAISFCSNAERAELRAIE 361
Query: 360 KRAGSKL 366
++ K+
Sbjct: 362 RQIEQKV 368
>gi|53718749|ref|YP_107735.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei K96243]
gi|53725492|ref|YP_103512.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|67643786|ref|ZP_00442529.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
gi|121599991|ref|YP_992380.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
gi|124383787|ref|YP_001026818.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|126449417|ref|YP_001079898.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
gi|126454058|ref|YP_001065480.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
gi|134281039|ref|ZP_01767748.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
gi|167893438|ref|ZP_02480840.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 7894]
gi|217419830|ref|ZP_03451336.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
gi|242317719|ref|ZP_04816735.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
gi|386862473|ref|YP_006275422.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026b]
gi|403517911|ref|YP_006652044.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BPC006]
gi|418390012|ref|ZP_12967823.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354a]
gi|418538110|ref|ZP_13103738.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026a]
gi|418541611|ref|ZP_13107086.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258a]
gi|418547854|ref|ZP_13112990.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258b]
gi|418554032|ref|ZP_13118832.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354e]
gi|52209163|emb|CAH35107.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
K96243]
gi|52428915|gb|AAU49508.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|121228801|gb|ABM51319.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
gi|124291807|gb|ABN01076.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|126227700|gb|ABN91240.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
gi|126242287|gb|ABO05380.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
gi|134247345|gb|EBA47430.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
gi|217397134|gb|EEC37150.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
gi|238525219|gb|EEP88647.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
gi|242140958|gb|EES27360.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
gi|385348870|gb|EIF55466.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026a]
gi|385357533|gb|EIF63583.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258a]
gi|385359528|gb|EIF65484.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258b]
gi|385370979|gb|EIF76201.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354e]
gi|385375790|gb|EIF80532.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354a]
gi|385659601|gb|AFI67024.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026b]
gi|403073554|gb|AFR15134.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BPC006]
Length = 482
Score = 269 bits (687), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 146/365 (40%), Positives = 226/365 (61%), Gaps = 11/365 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L+ +L+A GY+ PTPIQA IP+ L+GRD+ G+A TG+GKTA+F+LP ++RLL
Sbjct: 15 QFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLL 74
Query: 62 YR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
+ P R P +R LILTPTRELA QV + + A+ T +R +V GG+ Q
Sbjct: 75 PQANTSASPARHP-VRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAE 133
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR +I++ATPGR++DH++ + +L + +L+LDEADR+L++GF ++ ++ L PK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQK-TANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQT+LFSAT + ++ +L L P + S ST+T+ V + E +++A ++
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVA---EGDKQAAVV 249
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
L +VI+F +K A RL + AA +HG+ +Q++R++AL+ F++ ++
Sbjct: 250 KLIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIE 309
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARGLDI + VIN+ P + YVHR+GRT RAG G A++ + N+R L
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369
Query: 356 KAIAK 360
I K
Sbjct: 370 ADIEK 374
>gi|156740947|ref|YP_001431076.1| DEAD/DEAH box helicase [Roseiflexus castenholzii DSM 13941]
gi|156232275|gb|ABU57058.1| DEAD/DEAH box helicase domain protein [Roseiflexus castenholzii DSM
13941]
Length = 450
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 154/375 (41%), Positives = 215/375 (57%), Gaps = 7/375 (1%)
Query: 16 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 75
LGY PTPIQ IP AL GRD+ G A TG+GKTAAF LP L L+ P+ +R +I+
Sbjct: 19 LGYHTPTPIQEQVIPHALAGRDVIGIAQTGTGKTAAFVLPILHHLMRGPRG--RVRAMIV 76
Query: 76 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR 135
TPTRELA Q+ +IE + + T IR + GG+ + Q LR +I V PGR++DHL
Sbjct: 77 TPTRELAEQIQGVIEALGKHTGIRSVTLYGGVGYQGQIQRLRRGVEIAVVCPGRLLDHLE 136
Query: 136 NSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 195
++ LD L VL LDEAD++ ++GF ++ ++RL P RQTMLFSAT+ + V L +
Sbjct: 137 RG-TLTLDHLEVLTLDEADQMFDMGFLPDVRRILRLAPVERQTMLFSATMPDAVRSLARE 195
Query: 196 SLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQA 255
+L PL + SA +T+T + + E + ++L+ L +T V+IF+ TK
Sbjct: 196 ALRDPLTVQIGRSAPV-ATVTHAIYPVP---EHLKTSLLIELLERTDAESVLIFTRTKHR 251
Query: 256 AHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 315
A RL +A LHGNL+Q +R AL+ FR L ATD+AARG+D+ + V
Sbjct: 252 AQRLGDTLARLGYRATSLHGNLSQNRRQAALDGFRSGRYQILTATDIAARGIDVARISHV 311
Query: 316 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQS 375
INY P+ +Y HR+GRT RA R G A T VT D ++++AI + G LK IV
Sbjct: 312 INYDMPQTAEAYTHRIGRTGRAARTGDAFTLVTRGDTAMVRAIERLIGEPLKREIVPGFD 371
Query: 376 ITKWSKIIEQMEDQV 390
+ + E D V
Sbjct: 372 YNAAAPVHETRSDAV 386
>gi|294794656|ref|ZP_06759792.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44]
gi|294454986|gb|EFG23359.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44]
Length = 515
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 145/368 (39%), Positives = 219/368 (59%), Gaps = 7/368 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L +S P+LRA +G+ +PTPIQ IP+A++G+D+ G A TG+GKTAAF LP LER+
Sbjct: 7 QLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVD 66
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + +V+IL+PTRELA+QV + K+AQ+T+I + GG Q AL+ P
Sbjct: 67 GNERHV---QVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKNPQ 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DH+ S+ D + V++LDEAD +L +GF +I++++ P+ QT+LF
Sbjct: 124 IIVATPGRLMDHMDRG-SIKFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTLLF 182
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ + + +L + LT+P + P+ + + + ++ ++ + VL L
Sbjct: 183 SATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFD---VLCRLFDIQ 239
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
IIF+ TK+ + A +HG+L+Q +R + FR+ +D L+ATD
Sbjct: 240 TPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATD 299
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV V NY P+D SY HRVGRT RAG+ G A TFV + L AI +
Sbjct: 300 VAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHAIERL 359
Query: 362 AGSKLKSR 369
K+ R
Sbjct: 360 TKRKIARR 367
>gi|282849975|ref|ZP_06259358.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745]
gi|294792894|ref|ZP_06758041.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27]
gi|282580412|gb|EFB85812.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745]
gi|294456793|gb|EFG25156.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27]
Length = 515
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 145/368 (39%), Positives = 219/368 (59%), Gaps = 7/368 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L +S P+LRA +G+ +PTPIQ IP+A++G+D+ G A TG+GKTAAF LP LER+
Sbjct: 7 QLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVD 66
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + +V+IL+PTRELA+QV + K+AQ+T+I + GG Q AL+ P
Sbjct: 67 GNERHV---QVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKNPQ 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DH+ S+ D + V++LDEAD +L +GF +I++++ P+ QT+LF
Sbjct: 124 IIVATPGRLMDHMDRG-SIKFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTLLF 182
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ + + +L + LT+P + P+ + + + ++ ++ + VL L
Sbjct: 183 SATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFD---VLCRLFDIQ 239
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
IIF+ TK+ + A +HG+L+Q +R + FR+ +D L+ATD
Sbjct: 240 TPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATD 299
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV V NY P+D SY HRVGRT RAG+ G A TFV + L AI +
Sbjct: 300 VAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHAIERL 359
Query: 362 AGSKLKSR 369
K+ R
Sbjct: 360 TKRKIARR 367
>gi|373487181|ref|ZP_09577850.1| DEAD/DEAH box helicase domain protein [Holophaga foetida DSM 6591]
gi|372010063|gb|EHP10676.1| DEAD/DEAH box helicase domain protein [Holophaga foetida DSM 6591]
Length = 438
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 154/376 (40%), Positives = 222/376 (59%), Gaps = 11/376 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L LLRA GY PTPIQA IP+ L GRD+ G A TG+GKTAAF LP L+RL
Sbjct: 6 LGLLPELLRAVREQGYETPTPIQAQAIPVVLQGRDLMGGAQTGTGKTAAFTLPMLQRLAP 65
Query: 63 R------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 116
+ P + P IR L+LTPTRELA+QV I + +R + GG++ Q AL
Sbjct: 66 QASTSTSPAKHP-IRALVLTPTRELAMQVEESIRTYGKHIPLRSTTIFGGVNINPQIAAL 124
Query: 117 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 176
R +I+VATPGR++DH + ++ D L +L+LDEADR+L++GF +I +++ L P +R
Sbjct: 125 RKGVEILVATPGRLLDHHQQG-TLRFDQLEILVLDEADRMLDMGFIRDIKKILALLPAKR 183
Query: 177 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 236
Q++LFSAT + ++ EL L P + P + + V + R R + A+L
Sbjct: 184 QSLLFSATFSGEIRELAASLLKDPASVDVAPRNSTTELVKQVVHPVDRER---KRALLAH 240
Query: 237 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 296
L +V++F+ TK A+RL + A +HGN +Q QR++AL F++ ++
Sbjct: 241 LIQTKNLEQVLVFTRTKHGANRLAEQLDKDGISALAIHGNKSQPQRIKALSDFKQGNIRV 300
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 356
L+ATD+AARGLDI + V+NY P+ YVHR+GRT RAG EG A++ V ++ LLK
Sbjct: 301 LVATDIAARGLDIDQLPHVVNYELPQVPEDYVHRIGRTGRAGSEGEALSLVCVDEHKLLK 360
Query: 357 AIAKRAGSKLKSRIVA 372
I + + L S +VA
Sbjct: 361 GIERLLKNPLPSEVVA 376
>gi|295101226|emb|CBK98771.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
L2-6]
Length = 648
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 150/385 (38%), Positives = 219/385 (56%), Gaps = 14/385 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL- 60
+L LS PLL+A GY P+PIQA+ IP L GRD+ G A TG+GKTAAFALP L+RL
Sbjct: 5 DLKLSAPLLKAVSEAGYETPSPIQASAIPPVLEGRDLMGCAQTGTGKTAAFALPMLDRLS 64
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
P+R A+R LILTPTRELA+Q+ + ++ +R ++ GG+ Q A+R
Sbjct: 65 AAAPRRKGAVRALILTPTRELALQIGESFDAYGKYLKLRSTVIFGGVGQAPQVEAIRKGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DI++A PGR+ D L +DL +L V +LDEADR+L++GF ++ +++ P +RQ ++
Sbjct: 125 DILIACPGRLND-LIGQGHIDLSNLEVFVLDEADRMLDMGFVHDVKKVIAKLPAKRQNLM 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+ +++++L L P + DP S+ E + + E + +LL K
Sbjct: 184 FSATMPKEIEQLAAGILHDPAFVKVDPV----SSTVERIDQSLYFVEKGNKKLLLPWLIK 239
Query: 241 TFTSKV---IIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
T V ++FS TK A ++ + AA +HGN +Q R+ ALE F++ L
Sbjct: 240 NLTPPVQNALVFSRTKHGADKIARDLTKQGITAAAIHGNKSQTARVAALEGFKEGKTRVL 299
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATD+AARG+DI + V NY P +YVHR+GRTARAG +G AV+F + L
Sbjct: 300 VATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEMEYLAG 359
Query: 358 IAKRAGSKLKSRIVAEQSITKWSKI 382
I KL R + S W +
Sbjct: 360 I-----EKLNRRKIPVVSGHPWDGV 379
>gi|163855229|ref|YP_001629527.1| ATP-dependent RNA helicase [Bordetella petrii DSM 12804]
gi|163258957|emb|CAP41256.1| putative ATP-dependent RNA helicase [Bordetella petrii]
Length = 476
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 149/366 (40%), Positives = 224/366 (61%), Gaps = 13/366 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L LL++ GY+ PTPIQA +P + GRD+ G+A TG+GKTAAF LP L RL+
Sbjct: 21 DFGLHPQLLQSVADTGYTTPTPIQAQALPAVMAGRDVMGAAQTGTGKTAAFTLPILHRLM 80
Query: 62 ------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
P R P +R LILTPTRELA QV+ +++ ++ T +R +V GG+ Q+ A
Sbjct: 81 PLANTSASPARHP-VRTLILTPTRELADQVYESVKRYSKHTPLRSAVVFGGVDIGPQKEA 139
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR +I+VATPGR++DH+ +V+L + +L+LDEADR+L++GF ++ +VRL P +
Sbjct: 140 LRRGCEILVATPGRLLDHVEQK-TVNLSQVGILVLDEADRMLDMGFLPDLDRIVRLLPAQ 198
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVL 234
RQ +LFSAT + ++ +L + L +P+ + A R +T + V +I +M + A +
Sbjct: 199 RQGLLFSATFSNEIRKLGRTYLNQPVEIEV---AARNAT-ADTVSQIAYQMPSDAKRAAV 254
Query: 235 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 294
+ L +VI+FS TK RL ++A +HG+ +QA R++AL+ F+ +
Sbjct: 255 VHLVKSRGLKQVIVFSNTKIGTARLARELERDGVRAESIHGDKSQADRMKALDAFKAGEL 314
Query: 295 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 354
+ L+ATDVAARGLD+ GV VINY P + YVHR+GRT RAG G A+ T ++
Sbjct: 315 EVLVATDVAARGLDVAGVPCVINYDLPHNAEDYVHRIGRTGRAGASGEAIALFTADETRY 374
Query: 355 LKAIAK 360
L+ I K
Sbjct: 375 LQDIEK 380
>gi|73540602|ref|YP_295122.1| helicase [Ralstonia eutropha JMP134]
gi|72118015|gb|AAZ60278.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
eutropha JMP134]
Length = 537
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 150/364 (41%), Positives = 221/364 (60%), Gaps = 19/364 (5%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL------Y 62
+LRA GY+KPTPIQA IP+ L G+D+ G+A TG+GKTA FALP ++RLL
Sbjct: 65 ILRALSEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQRLLPMASASA 124
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P R P +R L+LTPTRELA QV+ + + A+ TD+R +V GG+ Q ALR +I
Sbjct: 125 SPARHP-VRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQTDALRRGVEI 183
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+VATPGR++DH++ SV+L + +L+LDEADR+L++GF ++ ++ L P +RQT+LFS
Sbjct: 184 LVATPGRLLDHVQQK-SVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAQRQTLLFS 242
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVR--IRRMREVNQEAVLLSL--- 237
AT + ++ L L +P+ + A+ S T E VR + ++ + ++A ++ L
Sbjct: 243 ATFSPEIKRLAASYLKQPVTIEV---AR--SNSTNENVRQMVYQVEDGQKQAAVVHLLRQ 297
Query: 238 -CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 296
+ + + I+F +K RL + AA +HG+ TQ +R++ LE F+ +D
Sbjct: 298 RAEQGLSKQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLEGFKNGTIDA 357
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 356
L+ATDVAARGLDI + VIN+ P YVHR+GRT RAG G A++ D LL
Sbjct: 358 LVATDVAARGLDIADMPCVINFDLPFSAEDYVHRIGRTGRAGASGDALSIFVPGDERLLT 417
Query: 357 AIAK 360
I K
Sbjct: 418 DIEK 421
>gi|392383668|ref|YP_005032865.1| ATP-dependent RNA helicase [Azospirillum brasilense Sp245]
gi|356878633|emb|CCC99520.1| ATP-dependent RNA helicase [Azospirillum brasilense Sp245]
Length = 478
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 153/360 (42%), Positives = 215/360 (59%), Gaps = 6/360 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L PLLRA GY TPIQA IP+ L GRD+ G A TG+GKTAAF LP L+RL
Sbjct: 7 LGLIEPLLRAVAEEGYQTATPIQAGAIPVLLEGRDVLGLAQTGTGKTAAFTLPILQRLFQ 66
Query: 63 RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
KR+ A R LILTPTRELA+Q+ + IR ++ GG+ Q AL
Sbjct: 67 NKKRVQAKAPRTLILTPTRELALQIGESFRTYGRHLPIRRTVIHGGVGQSPQVAALARGT 126
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D++VATPGR++D + V LD + + +LDEADR+L++GF ++ ++V + PK+RQT+L
Sbjct: 127 DVLVATPGRLLDLMAQKQCV-LDQVEIFVLDEADRMLDMGFIRDVRKVVAVLPKQRQTLL 185
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+ E V EL LT R+ P + + + V+ + R ++ +L L +
Sbjct: 186 FSATMPEAVVELAHSILTDAERIEVAPQSTTVERIAQRVLFVDR---ADKRRLLADLLQE 242
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+ I+F+ TK A R+ A + A +HG+ +Q+ R+ ALE FR + L+AT
Sbjct: 243 GAMERTIVFARTKHGADRIADHLKKAGVPADAIHGDKSQSARVRALESFRSGDLKALVAT 302
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARG+DI G+ VIN+ P + SYVHR+GRTARAG +G AV+F + + LKAI K
Sbjct: 303 DIAARGIDIDGITHVINFDLPNEPESYVHRIGRTARAGTDGSAVSFCDAEEVAYLKAIEK 362
>gi|312796956|ref|YP_004029878.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
gi|312168731|emb|CBW75734.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
Length = 508
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 145/364 (39%), Positives = 223/364 (61%), Gaps = 11/364 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL- 61
L+ P+L+A GY+KPTPIQA IP+ L GRD+ G+A TG+GKTA+F+LP ++RLL
Sbjct: 47 FGLAAPILQAIGEQGYTKPTPIQAQAIPIVLAGRDVMGAAQTGTGKTASFSLPIIQRLLP 106
Query: 62 -----YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 116
P R P +R LILTPTRELA QV + + A+ T +R +V GG+ Q L
Sbjct: 107 LASTSASPARHP-VRALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNPQTAEL 165
Query: 117 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 176
R +I++ATPGR++DH++ S L + +L+LDEADR+L++GF ++ ++ L P +R
Sbjct: 166 RRGVEILIATPGRLLDHVQQK-STSLAQVQMLVLDEADRMLDMGFLPDLQRILNLLPSQR 224
Query: 177 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 236
QT+LFSAT + ++ +L L P+ + S S + + V + E +++A ++
Sbjct: 225 QTLLFSATFSAEIKKLASTYLRDPVTIEVARSNSTASNVRQIVFEVA---EPDKQAAVVQ 281
Query: 237 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 296
L + +VI+F +K A RL + A +HG+ +Q++R++AL+ F++ ++
Sbjct: 282 LIRQRELKQVIVFCNSKIGASRLAKQLERDGVVATAIHGDRSQSERMQALDAFKRGEIEA 341
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 356
L+ATDVAARGLDI + VIN+ P + YVHR+GRT RAG G A++ + N+R L
Sbjct: 342 LVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFSGNERKQLA 401
Query: 357 AIAK 360
I K
Sbjct: 402 DIEK 405
>gi|115375824|ref|ZP_01463075.1| ATP-dependent RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1]
gi|310820250|ref|YP_003952608.1| ATP-dependent RNA helicase rhle [Stigmatella aurantiaca DW4/3-1]
gi|115367134|gb|EAU66118.1| ATP-dependent RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1]
gi|309393322|gb|ADO70781.1| ATP-dependent RNA helicase RhlE [Stigmatella aurantiaca DW4/3-1]
Length = 496
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 145/361 (40%), Positives = 214/361 (59%), Gaps = 8/361 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL LS PLLRA +A GY+ PTPIQ IP ALTG+D+ G A TG+GKTAAFALP L RL
Sbjct: 5 ELKLSEPLLRAVKAEGYTTPTPIQQRAIPPALTGQDVLGCAQTGTGKTAAFALPILHRLS 64
Query: 62 YRPKRIPA----IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 117
PA IRVL+LTPTRELA Q+ + +FT + ++ GG+ QE LR
Sbjct: 65 AGRSPPPAQGRPIRVLVLTPTRELASQIADSFQAYGRFTGLSWAVIFGGVGQHAQEQTLR 124
Query: 118 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 177
D+++ATPGR++D + + V L V +LDEADR+L++GF ++ ++ P +RQ
Sbjct: 125 RGVDVLIATPGRLLDLMGQGL-VSYKALEVFVLDEADRMLDMGFIHDVKRIISALPPKRQ 183
Query: 178 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 237
T+ FSAT+ ++ L + L P+R+ P + T+ +++ + R ++ + +L+ L
Sbjct: 184 TLFFSATMPPEIQSLAQGILKSPVRVEVTPESTTAETVEQKMFFVEREQKRH---LLVHL 240
Query: 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
+ ++F+ TK A+R+ + + A +HGN +Q R AL F+ L
Sbjct: 241 LGDASIRRALVFTRTKHGANRVAKHLASSRISAEAIHGNKSQNARERALGAFKDGSCRVL 300
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATD+AARG+DI G+ VIN+ P SYVHR+GRT RAG G A++F +R+ L+
Sbjct: 301 VATDIAARGIDIEGITHVINFDLPNIPESYVHRIGRTGRAGAVGTALSFCDGEERAYLRD 360
Query: 358 I 358
I
Sbjct: 361 I 361
>gi|452748745|ref|ZP_21948520.1| DEAD/DEAH box helicase [Pseudomonas stutzeri NF13]
gi|452007165|gb|EMD99422.1| DEAD/DEAH box helicase [Pseudomonas stutzeri NF13]
Length = 605
Score = 268 bits (686), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 148/367 (40%), Positives = 216/367 (58%), Gaps = 19/367 (5%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL- 61
L LS L A EA GY++PTP+Q IP L GRD+ +A TG+GKT FALP LE L
Sbjct: 6 LGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLELLFP 65
Query: 62 ---------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 112
Y PK+ RVL+LTPTRELA QVH + A+ ++ ++ GG+ Q
Sbjct: 66 GGHPDREHRYGPKQP---RVLVLTPTRELAAQVHDSFKIYARDLPLKSAVIFGGVGMNPQ 122
Query: 113 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172
A+ D++VA PGR++D L N ++DL + +L+LDEADR+L++GF ++ +++
Sbjct: 123 IQAVAKGLDVLVACPGRLLD-LANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAKL 181
Query: 173 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMREVNQE 231
P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+ ++
Sbjct: 182 PAKRQNLLFSATFSKDITDLAAKLLHNPERIEVTP----PNTTVERIEQRVFRVAASHKR 237
Query: 232 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 291
A+L L ++ +V++F+ TK A+RL L AA +HGN +Q R +AL F+
Sbjct: 238 ALLAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKA 297
Query: 292 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
V L+ATD+AARGLDI + V+N+ P YVHR+GRT RAGR G A++ V ++
Sbjct: 298 NQVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357
Query: 352 RSLLKAI 358
LLK I
Sbjct: 358 EKLLKGI 364
>gi|163750030|ref|ZP_02157274.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
gi|161330304|gb|EDQ01285.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
Length = 436
Score = 268 bits (686), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 160/375 (42%), Positives = 216/375 (57%), Gaps = 23/375 (6%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL-- 60
L+L LL+ ALGYS+PTPIQ IP L G+DI A TGSGKTAAF+LP L +L
Sbjct: 16 LSLRPELLQVLTALGYSQPTPIQTQAIPAILAGQDIMAGAQTGSGKTAAFSLPILHKLTE 75
Query: 61 -LYR-----------PK--RIPAIRV---LILTPTRELAVQVHSMIEKIAQFTDIRCCLV 103
L R P ++PAIR L+LTPTRELA+QVH K A+ T ++ LV
Sbjct: 76 PLLRLDEKNQQESEAPSCSQVPAIRAIRALVLTPTRELALQVHGSFVKYAKLTQLKSALV 135
Query: 104 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 163
GG+S Q L + DI+VATPGR++DHLR S+ L +L L+ DEADR+L++GF
Sbjct: 136 YGGVSIDAQAQILAAGVDILVATPGRLLDHLRRG-SMSLSELEFLVFDEADRMLDMGFKD 194
Query: 164 EIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR 223
EI +V+ PK RQT+LFSAT E + L + L P R+ +R + E R+
Sbjct: 195 EIDAIVKQLPKTRQTLLFSATFDESLYGLSQSLLRDPKRIEV---GERNAAAVEIEQRVY 251
Query: 224 RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRL 283
+ + A++ L +V+IFS K AA +L A + A HG+L+Q R
Sbjct: 252 AVDSDRKLALITHLIESGKLQQVLIFSRKKVAADKLAANLTKAGIGAQAFHGDLSQGARE 311
Query: 284 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYA 343
+ L+ F+ V L+ATDVAARG+DII + V+NY P YVHR+GRT RAG +G A
Sbjct: 312 KVLQSFKDGEVRVLVATDVAARGIDIIDLNYVVNYELPYKAEDYVHRIGRTGRAGNKGVA 371
Query: 344 VTFVTDNDRSLLKAI 358
+T + D LL+ +
Sbjct: 372 ITLLCREDEHLLEEV 386
>gi|307721464|ref|YP_003892604.1| DEAD/DEAH box helicase [Sulfurimonas autotrophica DSM 16294]
gi|306979557|gb|ADN09592.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
DSM 16294]
Length = 423
Score = 268 bits (686), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 149/372 (40%), Positives = 236/372 (63%), Gaps = 10/372 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L + +PLL A LGY +PT +Q IPL L +D+ +A TG+GKTAAFALP L+++
Sbjct: 5 KLGIFKPLLDAINDLGYKEPTLVQTRAIPLVLGKKDVFATAQTGTGKTAAFALPILQKMR 64
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ +R +IL+PTREL++Q++ I +++ DI+ ++VGG + Q AL+ +
Sbjct: 65 KHVES-KGVRAIILSPTRELSIQIYEDITAYSKYMDIKTTILVGGKDLQKQREALKKGTE 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IV+ATPGR+++H+ N +S L D+ V +LDEADR+L++GF+ +I ++ L PKR QT+LF
Sbjct: 124 IVIATPGRLLEHIENGLS--LKDVEVFVLDEADRMLDMGFTKDIRKIHPLLPKRHQTLLF 181
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS--LCS 239
SAT ++ V +L KL LTKP + +AK+ +T+ + + ++ + + ++A LL+ + S
Sbjct: 182 SATFSDKVRKLSKLILTKPAFIE---TAKKNTTV-DTINQVAYLVDTVRKAELLAYLIGS 237
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+ F +V++F+ TK +A L LK +HG+ T+A RL+ L F++ + L+A
Sbjct: 238 RNF-PQVLVFTRTKVSADALSEELKKDGLKCGVIHGDRTKANRLKTLNQFKEGKIRVLVA 296
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TD+A+RGLDI + VINY P YVHRVGRT RAGREG A++ + ++ +K I
Sbjct: 297 TDIASRGLDIEELPYVINYELPSIPEDYVHRVGRTGRAGREGEAISLIDIYEKYDIKDIE 356
Query: 360 KRAGSKLKSRIV 371
K G K+ V
Sbjct: 357 KLIGQKIPQETV 368
>gi|238018738|ref|ZP_04599164.1| hypothetical protein VEIDISOL_00582 [Veillonella dispar ATCC 17748]
gi|237865209|gb|EEP66499.1| hypothetical protein VEIDISOL_00582 [Veillonella dispar ATCC 17748]
Length = 521
Score = 268 bits (686), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 145/368 (39%), Positives = 219/368 (59%), Gaps = 7/368 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L +S P+LRA +G+ +PTPIQ IP+A++G+D+ G A TG+GKTAAF LP LER+
Sbjct: 7 QLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVD 66
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + +V+IL+PTRELA+QV + K+AQ+T+I + GG Q AL+ P
Sbjct: 67 GNERHV---QVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKNPQ 123
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DH+ S+ D + V++LDEAD +L +GF +I++++ P+ QT+LF
Sbjct: 124 IIVATPGRLMDHMDRG-SIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTLLF 182
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ + + +L + LT+P + P+ + + + ++ ++ + VL L
Sbjct: 183 SATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFD---VLCRLFDIQ 239
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
IIF+ TK+ + A +HG+L+Q +R + FR+ +D L+ATD
Sbjct: 240 TPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATD 299
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV V NY P+D SY HRVGRT RAG+ G A TFV + L AI +
Sbjct: 300 VAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHAIERL 359
Query: 362 AGSKLKSR 369
K+ R
Sbjct: 360 TKRKIARR 367
>gi|126442203|ref|YP_001058242.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
gi|167901897|ref|ZP_02489102.1| DEAD/DEAH box helicase [Burkholderia pseudomallei NCTC 13177]
gi|237811490|ref|YP_002895941.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
gi|126221696|gb|ABN85202.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
gi|237505268|gb|ACQ97586.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
Length = 481
Score = 268 bits (686), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 146/365 (40%), Positives = 226/365 (61%), Gaps = 11/365 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L+ +L+A GY+ PTPIQA IP+ L+GRD+ G+A TG+GKTA+F+LP ++RLL
Sbjct: 15 QFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLL 74
Query: 62 YR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
+ P R P +R LILTPTRELA QV + + A+ T +R +V GG+ Q
Sbjct: 75 PQANTSASPARHP-VRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAE 133
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR +I++ATPGR++DH++ + +L + +L+LDEADR+L++GF ++ ++ L PK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQK-TANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQT+LFSAT + ++ +L L P + S ST+T+ V + E +++A ++
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVA---EGDKQAAVV 249
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
L +VI+F +K A RL + AA +HG+ +Q++R++AL+ F++ ++
Sbjct: 250 KLIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIE 309
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARGLDI + VIN+ P + YVHR+GRT RAG G A++ + N+R L
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369
Query: 356 KAIAK 360
I K
Sbjct: 370 ADIEK 374
>gi|282599579|ref|ZP_05971084.2| ATP-dependent RNA helicase RhlE [Providencia rustigianii DSM 4541]
gi|282568585|gb|EFB74120.1| ATP-dependent RNA helicase RhlE [Providencia rustigianii DSM 4541]
Length = 457
Score = 268 bits (686), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 148/364 (40%), Positives = 221/364 (60%), Gaps = 11/364 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ +LRA LGY PTPIQ IP L G D+ SA TG+GKTA F LP L++L+
Sbjct: 13 DLALNEEILRAINELGYDSPTPIQQQAIPAVLAGNDLLASAQTGTGKTAGFTLPILQKLV 72
Query: 62 YRPK----RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 117
P+ R P IR LILTPTRELA QV +++ ++ +IR +V GG+S Q LR
Sbjct: 73 DAPRSGNNRRP-IRALILTPTRELAAQVAENVKEYSRHLNIRSFVVFGGVSINPQMMKLR 131
Query: 118 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 177
S D+++ATPGR++D L + +VDL + +L+LDEADR+L++GF +I ++ PK+RQ
Sbjct: 132 SGVDVLIATPGRLLD-LEHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVITKLPKKRQ 190
Query: 178 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS- 236
+LFSAT ++D+ +L L P+ + P ++ +E+V + + + ++A LLS
Sbjct: 191 NLLFSATFSDDIKQLASKLLNNPVSIEVAPR----NSASEQVTQYVHLVDKKRKAELLSF 246
Query: 237 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 296
+ + +V++F+ TK A+RL +K+A +HGN +Q R AL F+ +
Sbjct: 247 MIGRENWQQVLVFTRTKHGANRLAEHLNKDGIKSAAIHGNKSQGARTRALADFKSGDIRV 306
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 356
L+ATD+AARGLDI + V+N+ P YVHR+GRT RA G A++ V ++ LLK
Sbjct: 307 LVATDIAARGLDIEQLPHVVNFELPNVAEDYVHRIGRTGRAEATGQAISLVCIDEVKLLK 366
Query: 357 AIAK 360
I K
Sbjct: 367 DIEK 370
>gi|357627854|gb|EHJ77400.1| hypothetical protein KGM_01171 [Danaus plexippus]
Length = 473
Score = 268 bits (686), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 149/366 (40%), Positives = 212/366 (57%), Gaps = 8/366 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL + L AC L + P+ IQ IP+AL G+DI G A TGSGKT AFALP L+ LL
Sbjct: 41 ELGVVDVLCEACAELKWKHPSKIQKEAIPVALQGKDIIGLAETGSGKTGAFALPILQALL 100
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+R A LILTPTRELA Q+ E + ++C ++VGG+ Q L P
Sbjct: 101 ENPQRYFA---LILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALILSKKPH 157
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ATPGR++DHL N+ +L L L++DEADR+L + F E+ +++R+ P+ R+T LF
Sbjct: 158 IIIATPGRLVDHLENTKGFNLKALKYLVMDEADRILNMDFEVEVDKILRVIPRERRTYLF 217
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSK 240
SAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 218 SATMTKKVQKLQRASLQDPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGN 277
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+F I+F T A R+ +L + A LHG ++Q +RL AL F+ + LI T
Sbjct: 278 SF----IVFVSTCAGALRVALLLRALGVGAVPLHGQMSQQKRLAALNKFKSKARSVLICT 333
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V V+N P Y+HRVGRTARAGR G A+TFV+ D L + I +
Sbjct: 334 DVASRGLDIPHVDVVVNLDIPLHSKDYIHRVGRTARAGRAGKAITFVSQYDVELYQRIEQ 393
Query: 361 RAGSKL 366
G +L
Sbjct: 394 LIGKQL 399
>gi|395797811|ref|ZP_10477099.1| putative ATP-dependent RNA helicase [Pseudomonas sp. Ag1]
gi|421141916|ref|ZP_15601895.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens
BBc6R8]
gi|395338179|gb|EJF70032.1| putative ATP-dependent RNA helicase [Pseudomonas sp. Ag1]
gi|404506936|gb|EKA20927.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens
BBc6R8]
Length = 445
Score = 268 bits (686), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 151/359 (42%), Positives = 217/359 (60%), Gaps = 8/359 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L PLLRA E LGY PTP+QA IP L GRD+ +A TG+GKTA FA+P L+ L
Sbjct: 6 LGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLLQLLTM 65
Query: 63 RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
++ A +R LIL PTRELA QVH+ + + AQ + V GG+S Q LR
Sbjct: 66 EGPKVSANSVRALILCPTRELAEQVHASVAEYAQNVPLTTYAVYGGVSINPQMMKLRKGV 125
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D++VATPGR+ID R + ++ L+ L L+LDEADR+L+LGFS E+ + R+ PK+RQT+L
Sbjct: 126 DVLVATPGRLIDLFRQN-ALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKKRQTLL 184
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++++ +L L PL + P +T+ + VV + + R+ + + L K
Sbjct: 185 FSATFSDEIRQLAGQMLNDPLTVEVSPRNVAANTVKQWVVPVDKKRKAE---LFVHLMRK 241
Query: 241 TFTSKVIIFSGTKQAAHRL-KILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+V++F+ T+ L + L GL + A +HG+ QA R AL+ F+ V L+A
Sbjct: 242 GRWKQVLVFAKTRNGVDALVEKLQGLG-INADGIHGDKPQATRQRALDRFKSSDVQILVA 300
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
TDVAARGLDI + V+N+ P Y+HR+GRT RAG G A++ V ++ ++L AI
Sbjct: 301 TDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLSAI 359
>gi|254877101|ref|ZP_05249811.1| ATP-dependent RNA helicase rhlE [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254843122|gb|EET21536.1| ATP-dependent RNA helicase rhlE [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 445
Score = 268 bits (686), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 144/366 (39%), Positives = 219/366 (59%), Gaps = 5/366 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ + A E GY+KPTPIQA IPL L G D+ SA TG+GKTA F LP ++RLL
Sbjct: 5 DLGLNPLICSALEKKGYTKPTPIQAKAIPLVLKGNDVMASAQTGTGKTAGFTLPIIQRLL 64
Query: 62 YRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+PK + I+ LILTPTRELA Q+ I+ A T IR +V GG+S Q LR
Sbjct: 65 DQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVVFGGVSINPQMMKLRKGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
+I++ATPGR++D L + ++ D L +LDEADR+L++GF ++ + +L PK+ QT++
Sbjct: 125 EILIATPGRLLD-LYSQNALKFDSLNTFVLDEADRMLDMGFINDLKRIHKLLPKKLQTLM 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT + ++ L L P +SAD +T+++ + + ++N L+SL
Sbjct: 184 FSATFSPEITSLANEFLDNPQSVSADVVNTTVKKITQKIYTLDKSTKIN---ALISLIKD 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++FS TK A+++ A + ++ +HGN +Q R +AL F+ + ++ L+AT
Sbjct: 241 QDLHQVLVFSRTKHGANKISEKLNNAGITSSAIHGNKSQTARTKALADFKSKDINVLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARG+DI + VIN P YVHR+GRT RAG++G A++ V+ ++ L I
Sbjct: 301 DIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQDGLAISLVSADEVESLSNIEH 360
Query: 361 RAGSKL 366
G L
Sbjct: 361 LIGHLL 366
>gi|225159079|ref|ZP_03725387.1| DEAD/DEAH box helicase domain protein [Diplosphaera colitermitum
TAV2]
gi|224802337|gb|EEG20601.1| DEAD/DEAH box helicase domain protein [Diplosphaera colitermitum
TAV2]
Length = 451
Score = 268 bits (686), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 151/367 (41%), Positives = 215/367 (58%), Gaps = 10/367 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L L+R +A+GY PTP+Q IP+ L GRD+ SA TG+GKTAAFALP L RL
Sbjct: 5 KLGLPSSLVRGVQAMGYVDPTPVQLRAIPVVLAGRDLVASAQTGTGKTAAFALPVLARLG 64
Query: 62 -YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+RP RVL+L PTREL QV + +FTD+R ++ GG+ Q + LR+
Sbjct: 65 GHRPG---GPRVLVLEPTRELGAQVETAFRDFGRFTDVRSTIIHGGVGYGKQRSDLRAGT 121
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DIV+AT GR++D ++ + LD + VLILDE DR+L++GF ++ +V LCPK+RQT+
Sbjct: 122 DIVIATVGRLMDFIKEK-EIRLDSVEVLILDEVDRMLDMGFINDVKRIVGLCPKQRQTLF 180
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL-SLCS 239
FSAT+ +++++ + +L P R+ R T+ E V Q+ LL ++
Sbjct: 181 FSATIPPEIEDVARFALQNPERIEI----GRARTVNESVKHAIYPVTFEQKFDLLCAILD 236
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
K VIIFS TK A R+ A LH N +Q QR+EALE F+ + ++A
Sbjct: 237 KLDYESVIIFSRTKHGADRIARRLKSKKHSVAVLHANRSQNQRVEALEGFKNGRYEVMVA 296
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TD+AARG+D+ GV VINY P + YVHR+GRT RA G A VT ++ + I
Sbjct: 297 TDIAARGIDVAGVSHVINYDVPENPEDYVHRIGRTGRAMAVGDAFMLVTPDEAGDVHDIQ 356
Query: 360 KRAGSKL 366
+ G+K+
Sbjct: 357 RFIGAKI 363
>gi|452125822|ref|ZP_21938405.1| ATP-dependent RNA helicase [Bordetella holmesii F627]
gi|452129183|ref|ZP_21941759.1| ATP-dependent RNA helicase [Bordetella holmesii H558]
gi|451920917|gb|EMD71062.1| ATP-dependent RNA helicase [Bordetella holmesii F627]
gi|451925053|gb|EMD75193.1| ATP-dependent RNA helicase [Bordetella holmesii H558]
Length = 457
Score = 268 bits (686), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 149/355 (41%), Positives = 220/355 (61%), Gaps = 14/355 (3%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL------Y 62
+L++ GY+ PTPIQA IP+ + GRD+ G+A TG+GKTAAF +P L RL+
Sbjct: 1 MLKSIAETGYTSPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTVPILHRLMPLANSSA 60
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P R P +R LILTPTRELA QV+ +++ + T +R +V GG+ Q+ ALR +I
Sbjct: 61 SPARHP-VRALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQKEALRRGCEI 119
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
+VATPGR++DH+ +V+L + +L+LDEADR+L++GF ++ ++RL P +RQ +LFS
Sbjct: 120 LVATPGRLLDHVEQK-NVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPPQRQGLLFS 178
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSKT 241
AT + ++ +L + L +P+ L A R +T + V +I M + A ++ L
Sbjct: 179 ATFSNEIRKLGRSYLNQPIELEV---AARNAT-ADTVTQIAYPMTGDAKRAAVVHLVKSR 234
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+VI+FS TK RL +KA +HG+ +QA R++ALE F+ ++ L+ATD
Sbjct: 235 GLKQVIVFSNTKIGTARLARDLERDGVKAESIHGDKSQADRMKALEAFKAGELEVLVATD 294
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT-FVTDNDRSLL 355
VAARGLD+ GV VINY P + YVHR+GRT RAG G A+ F + +R LL
Sbjct: 295 VAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPEEERYLL 349
>gi|386002133|ref|YP_005920432.1| ATP-dependent RNA helicase [Methanosaeta harundinacea 6Ac]
gi|357210189|gb|AET64809.1| ATP-dependent RNA helicase, putative [Methanosaeta harundinacea
6Ac]
Length = 418
Score = 268 bits (686), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 146/368 (39%), Positives = 220/368 (59%), Gaps = 6/368 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L+++ PL RA GY+ PTPIQA IP L G D+ G A TG+GKTAAF LP L+R+
Sbjct: 5 DLDIAEPLQRALTKEGYANPTPIQAEAIPHLLRGEDLLGIAQTGTGKTAAFVLPVLQRIS 64
Query: 62 YRPKR-IP-AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
+R +P A R L+L PTRELA Q+ QF V GG+S + Q AL
Sbjct: 65 EERRRTVPGAPRALVLAPTRELAAQIDESFGTYGQFLQFSHAAVFGGVSQEPQVKALSRG 124
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
+ +VATPGR++D L +DL + +LDEADR+L++GF+ ++H +V PK+R ++
Sbjct: 125 VEALVATPGRLLD-LMEQGHIDLKGIEFFVLDEADRMLDMGFAKDVHRIVSALPKKRHSL 183
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
F+AT++ ++ EL L P+R+ P A P E+ + +E N +L+ L
Sbjct: 184 FFAATMSREIGELAGRLLKDPVRVEVAPQAT-PVESIEQRIFFVDQKEKN--PLLIGLLQ 240
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+ F +V++F+ TK+ A R+ + + ++A +HG+ TQ QRL AL F+ + L+A
Sbjct: 241 QKFLKRVLVFTRTKRRADRVAKVLTRSGIRADAIHGDRTQNQRLAALRGFKAGRLQVLVA 300
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TD+AARG+D+ + VINY P + SYVHR+GRT RAGR G A +F + +RS L+ I
Sbjct: 301 TDIAARGIDVEDISHVINYDLPNEPESYVHRIGRTGRAGRAGTAYSFCSAEERSFLRDIE 360
Query: 360 KRAGSKLK 367
+ +K++
Sbjct: 361 RLTRTKIR 368
>gi|395499060|ref|ZP_10430639.1| putative ATP-dependent RNA helicase [Pseudomonas sp. PAMC 25886]
Length = 443
Score = 268 bits (686), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 151/359 (42%), Positives = 217/359 (60%), Gaps = 8/359 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L PLLRA E LGY PTP+QA IP L GRD+ +A TG+GKTA FA+P L+ L
Sbjct: 6 LGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLLQLLTM 65
Query: 63 RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
++ A +R LIL PTRELA QVH+ + + AQ + V GG+S Q LR
Sbjct: 66 EGPKVSANSVRALILCPTRELAEQVHASVAEYAQNLPLTTYAVYGGVSINPQMMKLRKGV 125
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
D++VATPGR+ID R + ++ L+ L L+LDEADR+L+LGFS E+ + R+ PK+RQT+L
Sbjct: 126 DVLVATPGRLIDLFRQN-ALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKKRQTLL 184
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++++ +L L PL + P +T+ + VV + + R+ + + L K
Sbjct: 185 FSATFSDEIRQLAGQMLNDPLTVEVSPRNVAANTVKQWVVPVDKKRKAE---LFVHLMRK 241
Query: 241 TFTSKVIIFSGTKQAAHRL-KILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+V++F+ T+ L + L GL + A +HG+ QA R AL+ F+ V L+A
Sbjct: 242 GRWKQVLVFAKTRNGVDALVEKLQGLG-INADGIHGDKPQATRQRALDRFKSSDVQILVA 300
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
TDVAARGLDI + V+N+ P Y+HR+GRT RAG G A++ V ++ ++L AI
Sbjct: 301 TDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLSAI 359
>gi|381188403|ref|ZP_09895965.1| ATP-dependent RNA helicase RhlE [Flavobacterium frigoris PS1]
gi|379650191|gb|EIA08764.1| ATP-dependent RNA helicase RhlE [Flavobacterium frigoris PS1]
Length = 428
Score = 268 bits (686), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 145/370 (39%), Positives = 226/370 (61%), Gaps = 15/370 (4%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE---- 58
L LS LL+A GY+ P+PIQ IP L G+D+ SA TG+GKTA F LP L+
Sbjct: 6 LGLSDALLKAISKKGYTTPSPIQQKAIPPILEGKDVLASAQTGTGKTAGFTLPILQILAE 65
Query: 59 --RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 116
L +RP IR LILTPTRELA Q+ + I++ ++F D+R ++ GG++ K Q L
Sbjct: 66 GKHLSHRP-----IRALILTPTRELAAQILANIKEYSEFLDLRSTVIFGGVNQKPQVAQL 120
Query: 117 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 176
R DI+VATPGR+ID L+N + L + +L+LDEADR+L++GF +I ++++ P +R
Sbjct: 121 RQGIDILVATPGRLID-LQNQGLITLSKVEILVLDEADRMLDMGFLRDIERIMKVLPVKR 179
Query: 177 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 236
Q ++FSAT ++D+ +L L KP+++ A P +T++V + + ++ +++
Sbjct: 180 QNLMFSATFSKDIKKLAMGILHKPVQVEATPENTTVDAITQKVYPVAKEKKTE---LIIK 236
Query: 237 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 296
L ++ ++++F+ TKQ A++L A ++AA +HGN Q R +AL F+ +
Sbjct: 237 LITEGNWKQILVFTRTKQGANKLTESMISAGIQAAAIHGNKGQGARTKALAGFKNGSLTA 296
Query: 297 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 356
L+ATD+AARGLDI + V+N+ P YVHR+GRT RAG G A++ + ++ L+
Sbjct: 297 LVATDIAARGLDIPLLPHVVNFELPNIPEDYVHRIGRTGRAGANGEAISLFSPDETVFLR 356
Query: 357 AIAKRAGSKL 366
I K G KL
Sbjct: 357 DIEKLIGMKL 366
>gi|407476475|ref|YP_006790352.1| ATP-dependent RNA helicase CshA [Exiguobacterium antarcticum B7]
gi|407060554|gb|AFS69744.1| ATP-dependent RNA helicase CshA [Exiguobacterium antarcticum B7]
Length = 539
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 145/368 (39%), Positives = 214/368 (58%), Gaps = 7/368 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELNLS L++ +G+ + TPIQA IP+ L+G D+ G A TG+GKTAAF +PT+ER+
Sbjct: 6 ELNLSEALIKGVLKMGFEEATPIQAETIPVGLSGVDLIGQAQTGTGKTAAFGIPTIERID 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ + I A L+L PTRELA+QV + +I + + V GG Q ALR P
Sbjct: 66 AKSRHIQA---LVLAPTRELAIQVAEELNRIGEVKRVHALPVYGGQQIDRQIRALRKNPQ 122
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
IVVATPGR++DH+ N +++LD + +ILDEAD +L +GF +I +++ P+ RQT+LF
Sbjct: 123 IVVATPGRLMDHM-NRKTLNLDHVQTVILDEADEMLNMGFVEDIEKILGTLPESRQTLLF 181
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ + + ++ +T P + + + + ++ ++ + VL L
Sbjct: 182 SATMPQQIRKIADRFMTTPTHIKVKAKEMTVENIDQSFIELKENQKFD---VLCRLIDTD 238
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
IIF TK+ + A LHG+LTQA+R + + F+K +D L+ATD
Sbjct: 239 SPELSIIFGRTKKRVDEMTEGLVQRGYTADGLHGDLTQAKRDQVIRRFKKGTIDILVATD 298
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI GV V N+ P+D SYVHR+GRT RAG+ G A+TFVT + +K I +
Sbjct: 299 VAARGLDITGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGSAITFVTPREFGQIKTIERV 358
Query: 362 AGSKLKSR 369
K+ R
Sbjct: 359 TNKKMSRR 366
>gi|294657345|ref|XP_459659.2| DEHA2E08052p [Debaryomyces hansenii CBS767]
gi|91207781|sp|Q6BQ61.2|RRP3_DEBHA RecName: Full=ATP-dependent rRNA helicase RRP3
gi|199432622|emb|CAG87892.2| DEHA2E08052p [Debaryomyces hansenii CBS767]
Length = 477
Score = 268 bits (685), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 146/365 (40%), Positives = 212/365 (58%), Gaps = 6/365 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L LL A + + ++KPTPIQ+ IP AL G+DI G A TGSGKTAAFA+P L+ L
Sbjct: 69 ELKLIPELLEAIQQMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQALW 128
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+ A L+L PTRELA Q+ + + +R +VGG+ Q L P
Sbjct: 129 ---EAQAAYYGLVLAPTRELAYQIKETFDALGSSMGLRSVCIVGGMDMMDQARDLMRKPH 185
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++DHL ++ L +L L++DEADRLL++ F + +++++ P +R T LF
Sbjct: 186 ILVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKIIPTQRTTYLF 245
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T + +L + SL P+R++ + L + ++ + + + L+ L ++
Sbjct: 246 SATMTNKIAKLQRASLHNPVRVAVSNKYQTADNLVQSMMLVS---DGYKNTYLIHLLNEF 302
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+IIF+ T + R +L + A LHG LTQAQRL +L F+ + LIATD
Sbjct: 303 LGKSIIIFTRTCAHSQRTALLARILGFSAVPLHGQLTQAQRLGSLNKFKAGKANILIATD 362
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLDI V VINY P D +Y+HRVGRTARAG+ G +++ +T D + I
Sbjct: 363 VAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGKSGKSISLITQYDLEMYLRIESV 422
Query: 362 AGSKL 366
G KL
Sbjct: 423 LGKKL 427
>gi|254259821|ref|ZP_04950875.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
gi|254218510|gb|EET07894.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
Length = 486
Score = 268 bits (685), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 146/365 (40%), Positives = 226/365 (61%), Gaps = 11/365 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L+ +L+A GY+ PTPIQA IP+ L+GRD+ G+A TG+GKTA+F+LP ++RLL
Sbjct: 15 QFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLL 74
Query: 62 YR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
+ P R P +R LILTPTRELA QV + + A+ T +R +V GG+ Q
Sbjct: 75 PQANTSASPARHP-VRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAE 133
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR +I++ATPGR++DH++ + +L + +L+LDEADR+L++GF ++ ++ L PK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQK-TANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQT+LFSAT + ++ +L L P + S ST+T+ V + E +++A ++
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVA---EGDKQAAVV 249
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
L +VI+F +K A RL + AA +HG+ +Q++R++AL+ F++ ++
Sbjct: 250 KLIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIE 309
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARGLDI + VIN+ P + YVHR+GRT RAG G A++ + N+R L
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369
Query: 356 KAIAK 360
I K
Sbjct: 370 ADIEK 374
>gi|224369411|ref|YP_002603575.1| protein RhlE2 [Desulfobacterium autotrophicum HRM2]
gi|223692128|gb|ACN15411.1| RhlE2 [Desulfobacterium autotrophicum HRM2]
Length = 460
Score = 268 bits (685), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 150/361 (41%), Positives = 221/361 (61%), Gaps = 11/361 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL L L++A + GY +PTPIQ IP L G+DI A TG+GKT AFALP +E +L
Sbjct: 5 ELGLRAELIKAVKTKGYIEPTPIQIRVIPAILNGQDILARAQTGTGKTDAFALPIVE-IL 63
Query: 62 YRPK---RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
R K R P R L+LTPTRELA+QV I+ A+ +RC +V GG++ Q L+
Sbjct: 64 ARGKAHRRHP--RALVLTPTRELALQVGESIKAYARRVSLRCTVVYGGVNVNPQIDRLKR 121
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
DI+VATPGR++D + V L + L+ DEADR+L+LGFS EI +++ L P+ R+T
Sbjct: 122 GVDILVATPGRLLDLAAFNRDVKLSKIEFLVFDEADRMLDLGFSDEISQILELVPQDRRT 181
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV-RIRRMREVNQEAVLLSL 237
MLFSAT T + +L L P ++ P+ +T+ E +V ++ + + N+ +L+ L
Sbjct: 182 MLFSATYTRQIRDLADKMLKTPEQIEVTPN----TTVAESIVQKVHLVEKSNKRELLIHL 237
Query: 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 297
+++ +V++F+ TK A++L + AA LHGN +Q+ R L+ F+ + L
Sbjct: 238 ITRSDWRQVLVFTRTKHGANKLAERLAQVKISAAALHGNKSQSFRTRTLQEFKNGEIRIL 297
Query: 298 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357
+ATDVAARGLDI G+ V+NY P YVHR+GRT RAG +G AV+ V+ ++ LK+
Sbjct: 298 VATDVAARGLDITGLPHVVNYDMPSVAEDYVHRIGRTGRAGIQGVAVSLVSKEEKVFLKS 357
Query: 358 I 358
+
Sbjct: 358 V 358
>gi|391232915|ref|ZP_10269121.1| DNA/RNA helicase, superfamily II [Opitutaceae bacterium TAV1]
gi|391222576|gb|EIQ00997.1| DNA/RNA helicase, superfamily II [Opitutaceae bacterium TAV1]
Length = 450
Score = 268 bits (685), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 152/375 (40%), Positives = 216/375 (57%), Gaps = 28/375 (7%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L L+R +A+GY+ PTP+Q IP+ L+ RD+ SA TG+GKTAAFALP L L
Sbjct: 6 LGLPANLVRGVQAMGYTDPTPVQLRAIPVVLSKRDLIASAQTGTGKTAAFALPVLAGLGA 65
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P RVL+L PTREL QV + +FTDIR ++ GG+ Q + LR+ DI
Sbjct: 66 HKAAGP--RVLVLEPTRELGAQVETAFRDFGRFTDIRSTIIHGGVGYGKQRSDLRAGTDI 123
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V+AT GR++D LR ++ LD L VLILDE DR+L++GF ++ +V LCPK+RQT+ FS
Sbjct: 124 VIATVGRLMDFLREK-TLTLDHLEVLILDEVDRMLDMGFVNDVKRIVALCPKKRQTLFFS 182
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV--------- 233
AT+ +++E+ + +L P R+ E+ R R + E+ + A+
Sbjct: 183 ATIPPEIEEVARFALQNPERI--------------EIGRARTVNELVKHAIYPVAFEQKF 228
Query: 234 --LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 291
L +L +T VIIFS TK A R+ A LH N +Q QR+EAL+ F+K
Sbjct: 229 DLLRALLDRTDYESVIIFSRTKHGADRIARKLKANKHSVAVLHANRSQNQRVEALDGFKK 288
Query: 292 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
+ ++ATD+AARG+D+ GV VINY P + YVHR+GRT RA G A T +
Sbjct: 289 GRYEVMVATDIAARGIDVAGVSHVINYDVPENPEDYVHRIGRTGRAMAVGDAFMLATPEE 348
Query: 352 RSLLKAIAKRAGSKL 366
++ I + G+K+
Sbjct: 349 AGDVRDIERFIGTKI 363
>gi|432854582|ref|XP_004067972.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Oryzias
latipes]
Length = 469
Score = 268 bits (685), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 160/384 (41%), Positives = 217/384 (56%), Gaps = 15/384 (3%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS L++ C+ LG KPTP+Q C+P L GRD G A TGSGKTAAF LP L++L
Sbjct: 7 LGLSDWLVKQCKQLGIDKPTPVQENCVPAILEGRDCLGCAKTGSGKTAAFVLPVLQKLSE 66
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P I L+LTPTRELA Q+ + + ++ C+VVGG+ Q L P +
Sbjct: 67 DPY---GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIVVGGMDMVTQALELSKQPHV 123
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG---FSAEIHELVRLCPKRRQTM 179
VVATPGR+ DH+R+S + + + LILDEADRLLE G F+ ++ E++ P +RQT+
Sbjct: 124 VVATPGRLADHVRSSNTFSMRKIKFLILDEADRLLEQGCTDFTKDLEEILGTLPAKRQTL 183
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
LFSATLT+ + EL +++ KP S T+ E R E ++A L+ L
Sbjct: 184 LFSATLTDTLQELKSIAMNKPFFWE---STSETRTVEELDQRYILTPEKVKDAYLVHLI- 239
Query: 240 KTFTSK-----VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 294
+TFT K +IIF+ T + L ++ LH + Q QR L F+
Sbjct: 240 QTFTDKHDDWSIIIFTNTCKNCQILTMMLREFNFPTISLHSMMKQRQRFANLAKFKASVY 299
Query: 295 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 354
LIATDVAARGLDI VQ VIN+ P Y+HRVGRTARAGR G ++T VT D L
Sbjct: 300 KILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIHL 359
Query: 355 LKAIAKRAGSKLKSRIVAEQSITK 378
+ +I ++ +KL V E+ + K
Sbjct: 360 VHSIEEQTKTKLTEYPVEEKEVHK 383
>gi|52840505|ref|YP_094304.1| DEAD/DEAH box helicase [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|52627616|gb|AAU26357.1| ATP-dependent RNA helicase, DEAD box family [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
Length = 414
Score = 268 bits (685), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 151/368 (41%), Positives = 221/368 (60%), Gaps = 7/368 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L PL RA LGY+ PT IQ IPL L G D+ GSA TG+GKTA+F LP L++
Sbjct: 5 QLALIEPLNRAVSELGYTTPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPILQKAS 64
Query: 62 YRPKRIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+ + P ++VLILTPTRELA+QVH I + ++ +R ++ GG+ + Q L S
Sbjct: 65 QQTQTSPNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQLDSGL 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
+I+VATPGR++D L +V D++ L+LDEADR+L++GF +I ++++L P +RQ +L
Sbjct: 125 EILVATPGRLLD-LYQQRAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLKRQNLL 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS-LCS 239
FSAT T +V L + L K + + P T+ + V + R N + LLS L
Sbjct: 184 FSATFTPEVRALARNILNKAVEIDIAPRNTAVKTIKQTVYSVDR----NHKLALLSHLLH 239
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
K + ++FS TK A++L + + + +HGN +QAQR++AL F+ V LIA
Sbjct: 240 KNNWGQTLVFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRIKALADFKSGKVQTLIA 299
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TD+AARG+DI + V+N+ P YVHR+GRT RAG G AV+ V+ + LL +I
Sbjct: 300 TDIAARGIDIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKLLLSIE 359
Query: 360 KRAGSKLK 367
K KL+
Sbjct: 360 KLINQKLE 367
>gi|322795370|gb|EFZ18163.1| hypothetical protein SINV_10215 [Solenopsis invicta]
Length = 410
Score = 268 bits (685), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 145/359 (40%), Positives = 211/359 (58%), Gaps = 8/359 (2%)
Query: 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 68
L + C L + +PT IQ IPL L G+D+ G A TGSGKTAAFALP L+ LL +P+R
Sbjct: 6 LCKTCIDLKWKEPTRIQQEAIPLTLQGKDVIGLAETGSGKTAAFALPILQALLEQPQRYF 65
Query: 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 128
A LILTPTRELA Q+ + + ++ ++VGG+ Q L P I++ATPG
Sbjct: 66 A---LILTPTRELAFQISEQFDALGSSMGVKTVVLVGGMDMHAQGMILEKKPHIIIATPG 122
Query: 129 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 188
R++DHL N+ +L L L++DEADR+L + F E+ +++R+ P+ R+T+LFSAT+T+
Sbjct: 123 RLVDHLENTKGFNLRQLKFLVMDEADRILNMDFEVEVDKILRVIPRERRTLLFSATMTKK 182
Query: 189 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSKTFTSKVI 247
V +L + SL P+R+ + L + + I + ++V +L L +F +
Sbjct: 183 VQKLQRASLRNPVRVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGNSF----M 238
Query: 248 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 307
IF GT R +L A LHG ++Q +R+ AL F+ ++ LI+TDVA+RGL
Sbjct: 239 IFCGTCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSILISTDVASRGL 298
Query: 308 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 366
DI V VIN+ P Y+HRVGRTARAGR G ++TFVT D L + I + +L
Sbjct: 299 DIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLISKQL 357
>gi|340372039|ref|XP_003384552.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Amphimedon queenslandica]
Length = 451
Score = 268 bits (685), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 143/365 (39%), Positives = 214/365 (58%), Gaps = 6/365 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
++ ++ L ++CE +G++ PT IQ IP+AL GRD+ G A TGSGKT AF+LP L+ LL
Sbjct: 30 DIGITSVLCQSCEEMGWTTPTDIQREAIPVALEGRDVIGLAETGSGKTGAFSLPILQSLL 89
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P R+ A L+LTPTRELA Q+ E + ++C +VVGG+ Q AL P
Sbjct: 90 DTPTRLFA---LVLTPTRELAFQISEQFEALGGRIGVKCAVVVGGVDMMTQALALAKKPH 146
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
+V+ATPGR++DHL N+ L + L++DEADR+L + F E+ +++++ + R+T L+
Sbjct: 147 VVIATPGRLVDHLENTKGFSLRSVKYLVMDEADRILNMDFGEEVDKILKVLSRERRTYLY 206
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+T+ V +L + SL P+++ + L + + I ++ L+S+ ++
Sbjct: 207 SATMTKKVQKLQRASLHNPIKVEVSTKYQTVDKLQQSYIFIPSKY---KDCYLVSILNEF 263
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ ++F T R ++ L A L+G + Q +RL AL F+ + LIATD
Sbjct: 264 AGNSFMVFCSTCANTQRTAVMLRNLGLPAIPLYGKMAQMKRLGALSKFKSKSRSILIATD 323
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VA+RGLDI V VIN+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 324 VASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGRAITFVTQYDVELYQRIESL 383
Query: 362 AGSKL 366
G KL
Sbjct: 384 IGKKL 388
>gi|298482320|ref|ZP_07000507.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
gi|298271607|gb|EFI13181.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
Length = 374
Score = 268 bits (685), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 150/368 (40%), Positives = 222/368 (60%), Gaps = 6/368 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELN++ P+L+A E GY+ PTPIQ IP AL RDI G A TG+GKTA+FA+P ++ L
Sbjct: 5 ELNITEPILKAIEEKGYTVPTPIQEKAIPPALAKRDILGCAQTGTGKTASFAIPIIQHLQ 64
Query: 62 Y--RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
R I+ LILTPTRELA+Q+ I+ ++ T IR ++ GG++ + Q LR
Sbjct: 65 LDKEAARRQGIKALILTPTRELALQISECIDDYSKHTRIRHGVIFGGVNQRPQVDLLRKG 124
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
DI+VATPGR++D L + LD + +LDEADR+L++GF +I ++ PK +QT+
Sbjct: 125 IDILVATPGRLLD-LMTQGHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQTL 183
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
FSAT+ + + L K L P+++ P + ++ ++VV +E +Q +L+S+ S
Sbjct: 184 FFSATMPDSIISLTKSLLKNPVKIYITPKSSTVDSI-KQVVYFVEKKEKSQ--LLISILS 240
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
K V+IFS TK A ++ + G A + + +HGN +QA R AL F+ ++A
Sbjct: 241 KAEDQSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMVA 300
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TD+A+RG+DI + VINY P +YVHR+GRT RAG G A+TF + +R L+ I
Sbjct: 301 TDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNMGTALTFCSQEERKLVNDIQ 360
Query: 360 KRAGSKLK 367
K G KL
Sbjct: 361 KLTGKKLN 368
>gi|378776210|ref|YP_005184640.1| ATP-dependent RNA helicase, DEAD box family [Legionella pneumophila
subsp. pneumophila ATCC 43290]
gi|364507017|gb|AEW50541.1| ATP-dependent RNA helicase, DEAD box family [Legionella pneumophila
subsp. pneumophila ATCC 43290]
Length = 420
Score = 268 bits (685), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 151/368 (41%), Positives = 221/368 (60%), Gaps = 7/368 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L PL RA LGY+ PT IQ IPL L G D+ GSA TG+GKTA+F LP L++
Sbjct: 11 QLALIEPLNRAVSELGYTTPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPILQKAS 70
Query: 62 YRPKRIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+ + P ++VLILTPTRELA+QVH I + ++ +R ++ GG+ + Q L S
Sbjct: 71 QQTQTSPNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQLDSGL 130
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
+I+VATPGR++D L +V D++ L+LDEADR+L++GF +I ++++L P +RQ +L
Sbjct: 131 EILVATPGRLLD-LYQQRAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLKRQNLL 189
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS-LCS 239
FSAT T +V L + L K + + P T+ + V + R N + LLS L
Sbjct: 190 FSATFTPEVRALARNILNKAVEIDIAPRNTAVKTIKQTVYSVDR----NHKLALLSHLLH 245
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
K + ++FS TK A++L + + + +HGN +QAQR++AL F+ V LIA
Sbjct: 246 KNNWGQTLVFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRIKALADFKSGKVQTLIA 305
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TD+AARG+DI + V+N+ P YVHR+GRT RAG G AV+ V+ + LL +I
Sbjct: 306 TDIAARGIDIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKLLLSIE 365
Query: 360 KRAGSKLK 367
K KL+
Sbjct: 366 KLINQKLE 373
>gi|76808776|ref|YP_332762.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1710b]
gi|76578229|gb|ABA47704.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
1710b]
Length = 559
Score = 268 bits (685), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 146/365 (40%), Positives = 226/365 (61%), Gaps = 11/365 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L+ +L+A GY+ PTPIQA IP+ L+GRD+ G+A TG+GKTA+F+LP ++RLL
Sbjct: 92 QFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLL 151
Query: 62 YR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
+ P R P +R LILTPTRELA QV + + A+ T +R +V GG+ Q
Sbjct: 152 PQANTSASPARHP-VRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAE 210
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR +I++ATPGR++DH++ + +L + +L+LDEADR+L++GF ++ ++ L PK
Sbjct: 211 LRRGVEILIATPGRLLDHVQQK-TANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 269
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQT+LFSAT + ++ +L L P + S ST+T+ V + E +++A ++
Sbjct: 270 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVA---EGDKQAAVV 326
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
L +VI+F +K A RL + AA +HG+ +Q++R++AL+ F++ ++
Sbjct: 327 KLIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIE 386
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARGLDI + VIN+ P + YVHR+GRT RAG G A++ + N+R L
Sbjct: 387 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 446
Query: 356 KAIAK 360
I K
Sbjct: 447 ADIEK 451
>gi|167910130|ref|ZP_02497221.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
112]
Length = 400
Score = 268 bits (685), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 146/365 (40%), Positives = 226/365 (61%), Gaps = 11/365 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L+ +L+A GY+ PTPIQA IP+ L+GRD+ G+A TG+GKTA+F+LP ++RLL
Sbjct: 15 QFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLL 74
Query: 62 YR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
+ P R P +R LILTPTRELA QV + + A+ T +R +V GG+ Q
Sbjct: 75 PQANTSASPARHP-VRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAE 133
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR +I++ATPGR++DH++ + +L + +L+LDEADR+L++GF ++ ++ L PK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQK-TANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQT+LFSAT + ++ +L L P + S ST+T+ V + E +++A ++
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVA---EGDKQAAVV 249
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
L +VI+F +K A RL + AA +HG+ +Q++R++AL+ F++ ++
Sbjct: 250 KLIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIE 309
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARGLDI + VIN+ P + YVHR+GRT RAG G A++ + N+R L
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369
Query: 356 KAIAK 360
I K
Sbjct: 370 ADIEK 374
>gi|225155423|ref|ZP_03723915.1| Superfamily II DNA and RNA helicase-like protein [Diplosphaera
colitermitum TAV2]
gi|224803879|gb|EEG22110.1| Superfamily II DNA and RNA helicase-like protein [Diplosphaera
colitermitum TAV2]
Length = 536
Score = 268 bits (685), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 141/349 (40%), Positives = 208/349 (59%), Gaps = 7/349 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L+ L A +GY++PTPIQA +P L GRD+ GSA TG+GKTAAFALP L +L
Sbjct: 138 LGLNDALAFAVTEMGYTEPTPIQAQAVPAVLAGRDVTGSAQTGTGKTAAFALPILHKLGA 197
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
+R+ R L+L PTRELA+QV +K +++TD+ +V GG+ Q L+ D+
Sbjct: 198 HERRL---RCLVLEPTRELALQVEEAFQKYSKYTDLTATVVYGGVGYGKQREDLQRGVDV 254
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182
V ATPGR++DH+ ++ L D+ +L+LDE DR+L++GF ++ +V+ CP+ RQT+ FS
Sbjct: 255 VAATPGRLLDHIEQG-TMTLADVEILVLDEVDRMLDMGFLPDVKRIVQQCPQARQTLFFS 313
Query: 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 242
ATL ++ +L +L P+ + T++ + ++ + +L+ L S+T
Sbjct: 314 ATLPPELAQLASWALRDPVEIKIGQRRSPAETISHAFYPVVASQKFD---LLIDLLSRTE 370
Query: 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302
VIIF+ TK A R+ +H + Q +R+EALE F+ + L+ATD+
Sbjct: 371 FKSVIIFTRTKMGADRIAHRLQREGHTVGVIHSDRNQRERVEALEGFKSGKFEVLVATDI 430
Query: 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
AARGLDI GV VINY P + YVHR+GRT RA G A T VT++D
Sbjct: 431 AARGLDIAGVSHVINYDVPENPEDYVHRIGRTGRANASGDAFTLVTEDD 479
>gi|167823349|ref|ZP_02454820.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 9]
gi|226195327|ref|ZP_03790916.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
gi|225932529|gb|EEH28527.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
Length = 478
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 146/365 (40%), Positives = 226/365 (61%), Gaps = 11/365 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L+ +L+A GY+ PTPIQA IP+ L+GRD+ G+A TG+GKTA+F+LP ++RLL
Sbjct: 15 QFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLL 74
Query: 62 YR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
+ P R P +R LILTPTRELA QV + + A+ T +R +V GG+ Q
Sbjct: 75 PQANTSASPARHP-VRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAE 133
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR +I++ATPGR++DH++ + +L + +L+LDEADR+L++GF ++ ++ L PK
Sbjct: 134 LRRGVEILIATPGRLLDHVQQK-TANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
RQT+LFSAT + ++ +L L P + S ST+T+ V + E +++A ++
Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVA---EGDKQAAVV 249
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
L +VI+F +K A RL + AA +HG+ +Q++R++AL+ F++ ++
Sbjct: 250 KLIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIE 309
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARGLDI + VIN+ P + YVHR+GRT RAG G A++ + N+R L
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369
Query: 356 KAIAK 360
I K
Sbjct: 370 ADIEK 374
>gi|423298414|ref|ZP_17276472.1| hypothetical protein HMPREF1070_05137 [Bacteroides ovatus
CL03T12C18]
gi|392663326|gb|EIY56877.1| hypothetical protein HMPREF1070_05137 [Bacteroides ovatus
CL03T12C18]
Length = 374
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 147/368 (39%), Positives = 220/368 (59%), Gaps = 6/368 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
ELN++ P+L+A E GY+ PTPIQ IP AL RDI G A TG+GKTA+FA+P ++ L
Sbjct: 5 ELNITEPILKAIEEKGYAVPTPIQGEAIPAALAKRDILGCAQTGTGKTASFAIPIIQHLQ 64
Query: 62 YRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 119
+ + I+ LIL PTRELA+Q+ I A++T +R ++ GG++ + Q L
Sbjct: 65 MNKEAAKCRGIKALILMPTRELALQISECINDYAKYTQVRHGVIFGGVNQRPQVDMLHKG 124
Query: 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179
DI+VATPGR++D L N + LD + +LDEADR+L++GF +I ++ PK +QT+
Sbjct: 125 IDILVATPGRLLD-LMNQGHIHLDKIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQTL 183
Query: 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239
FSAT+ + + L L P+R+S P + + E++V +E + +L+S+
Sbjct: 184 FFSATMPDTIISLTNSLLKNPVRISITPKSSTVDAI-EQMVYFVEKKE--KSLLLVSILQ 240
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
K+ V++FS TK A ++ + G A + + +HGN +QA R AL F+ ++A
Sbjct: 241 KSEDQSVLVFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQLALGNFKSGKTRVMVA 300
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TD+AARG+DI + VINY P +YVHR+GRT RAG G A+TF + +R L+ I
Sbjct: 301 TDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNTGTALTFCSQEERKLVNDIQ 360
Query: 360 KRAGSKLK 367
K G KL
Sbjct: 361 KLTGKKLN 368
>gi|156502690|ref|YP_001428756.1| DEAD/DEAH box helicase [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|290953085|ref|ZP_06557706.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
holarctica URFT1]
gi|423050934|ref|YP_007009368.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
holarctica F92]
gi|156253293|gb|ABU61799.1| DEAD/DEAH box helicase family protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|421951656|gb|AFX70905.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
holarctica F92]
Length = 441
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 143/366 (39%), Positives = 217/366 (59%), Gaps = 5/366 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ + A E GY+KPTPIQA IP+ L G D+ SA TG+GKTA F LP ++RLL
Sbjct: 5 DLGLNSLICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQRLL 64
Query: 62 YRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
+PK + I+ LILTPTRELA Q+ I+ A T IR ++ GG+S Q LR
Sbjct: 65 DQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSNNPQMMKLRKGV 124
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
+I++ATPGR++D L + +V D L +LDEADR+L++GF ++ ++ L PK+ QT++
Sbjct: 125 EILIATPGRLLD-LYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQTLM 183
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT + ++ L L P +SAD +T+++ + + ++N L+SL
Sbjct: 184 FSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKIN---ALISLIKD 240
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++FS TK A+++ A + ++ +HGN +Q R +AL F+ ++ L+AT
Sbjct: 241 QNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVAT 300
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
D+AARG+DI + VIN YVHR+GRT RAG+EG A++ V+ ++ L I
Sbjct: 301 DIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNIEH 360
Query: 361 RAGSKL 366
G L
Sbjct: 361 LIGHLL 366
>gi|374262391|ref|ZP_09620958.1| hypothetical protein LDG_7373 [Legionella drancourtii LLAP12]
gi|363537177|gb|EHL30604.1| hypothetical protein LDG_7373 [Legionella drancourtii LLAP12]
Length = 418
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 149/366 (40%), Positives = 215/366 (58%), Gaps = 5/366 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L PLLRA GY++P+PIQA IP L G D+ SA TG+GKTA+F LP L+RL
Sbjct: 6 LGLIEPLLRAVSESGYNEPSPIQAQSIPTILRGNDLLASAQTGTGKTASFVLPILQRLHN 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+P+ + +VLILTPTRELA QVH I + + +R +V GG+ Q LR +
Sbjct: 66 QPRAKSNHTKVLILTPTRELAAQVHESIRQYGKHLSLRSAVVFGGVKISPQMMKLRGGVE 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I+VATPGR++D L ++ D+ L+LDEADR+L++GF +I ++ L PK RQ +LF
Sbjct: 126 ILVATPGRLMD-LYQQRAIQFSDVNTLVLDEADRMLDMGFIHDIKRIINLLPKERQNLLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT +E + L K L KP+ + P + + V + + R + A+L L K
Sbjct: 185 SATFSEAIRTLAKGLLNKPVEIDVAPRNTTAIAVKQTVHPVDKNR---KHALLSHLIHKN 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+ ++FS TK A++L + AA +HGN +Q+QR + L F+ + L+ATD
Sbjct: 242 KWGQTLVFSKTKHGANKLVQQLAEEHIYAAAIHGNKSQSQRTKVLADFKSGELHILVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
+AARG+DI + V+NY P+ YVHR+GRT RAG G A++ V ++ L+AI K
Sbjct: 302 IAARGIDIDQLPCVVNYDLPQVAEDYVHRIGRTGRAGASGSAISLVCADEVGQLQAIEKL 361
Query: 362 AGSKLK 367
KL+
Sbjct: 362 IKRKLE 367
>gi|388468703|ref|ZP_10142913.1| putative ATP-dependent RNA helicase [Pseudomonas synxantha BG33R]
gi|388012283|gb|EIK73470.1| putative ATP-dependent RNA helicase [Pseudomonas synxantha BG33R]
Length = 444
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 151/358 (42%), Positives = 211/358 (58%), Gaps = 6/358 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L PLLRA E LGY PTP+QA IP L GRD+ +A TG+GKTA FALP L+ L
Sbjct: 6 LGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQLLTM 65
Query: 63 RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
++ A R LIL PTRELA QVH+ + + AQ + V GG+S Q LR
Sbjct: 66 EGPKVAANSARALILCPTRELAEQVHASVAEYAQHLPLTTYAVYGGVSINPQMMKLRKGV 125
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
DI+VATPGR+ID R + ++ L+ L L+LDEADR+L+LGFS E+ + R+ PK+RQT+L
Sbjct: 126 DILVATPGRLIDLFRQN-ALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKKRQTLL 184
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT ++D+ L L PL + P +T+ + VV + + R + + + L K
Sbjct: 185 FSATFSDDIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVPVDKKR---KPELFVHLMRK 241
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
+V++F+ T+ L + A +HG+ QA R AL+ F+ V L+AT
Sbjct: 242 GRWKQVLVFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKTSEVQILVAT 301
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
DVAARGLDI + V+N+ P Y+HR+GRT RAG G A++ V ++ ++L AI
Sbjct: 302 DVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLSAI 359
>gi|329847732|ref|ZP_08262760.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
biprosthecum C19]
gi|328842795|gb|EGF92364.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
biprosthecum C19]
Length = 606
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 145/360 (40%), Positives = 216/360 (60%), Gaps = 8/360 (2%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L LS LL E GY KPTP+QA IP L G D+ G A TG+GKTAAFALP L+ LL
Sbjct: 6 DLGLSPTLLMTLEREGYEKPTPVQAQAIPYLLKGHDLLGIAQTGTGKTAAFALPILQHLL 65
Query: 62 YRPKRIPA---IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118
+++P+ +R LIL+PTRELA Q+ + ++ ++ + GG+ Q AL
Sbjct: 66 SN-RKMPSPKMVRALILSPTRELASQIAESFKTYSKGMGLQIATIYGGVKYGPQYKALLG 124
Query: 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178
D++V TPGR+IDH+ +VDL + +LDEAD++L+LGF I ++ PK+RQ
Sbjct: 125 GLDVLVCTPGRLIDHIEQK-TVDLSQVECFVLDEADQMLDLGFVKPIRQVASRLPKKRQN 183
Query: 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238
+ FSAT+ +++ L LT P R+ P A ++++V+ I R + A+L +
Sbjct: 184 LFFSATMPKEIGVLASELLTDPKRVEITPEATTAERVSQQVLFIEAQR---KRALLSEMY 240
Query: 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298
+ + ++F+ TK++A R+ ++AA +HG+ Q+QR AL+ FR V L+
Sbjct: 241 ADAVLERTLVFTRTKRSADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFRAGKVRALV 300
Query: 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
ATD+AARG+D+ V VINY P +YVHR+GRTARAG+ G ++T D++R LLK I
Sbjct: 301 ATDIAARGIDVDNVSHVINYELPNVAEAYVHRIGRTARAGKSGVSITLCADDERRLLKDI 360
>gi|212555586|gb|ACJ28040.1| ATP-dependent RNA helicase, DEAD box family [Shewanella
piezotolerans WP3]
Length = 422
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 142/338 (42%), Positives = 214/338 (63%), Gaps = 8/338 (2%)
Query: 17 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP--KRIPAIRVLI 74
GY++PTPIQ A IP+ L+G+D+ SA TG+GKTAAF LP L++L + K +IR LI
Sbjct: 33 GYNEPTPIQTAAIPVILSGKDLMASAQTGTGKTAAFTLPILQKLAMQSAGKETDSIRALI 92
Query: 75 LTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHL 134
L PTRELAVQV+ + + T ++ ++ GG+S Q ++L + DIVVATPGR++DHL
Sbjct: 93 LVPTRELAVQVNKSVTEYGVNTALKSMVIYGGVSIDAQASSLAAGVDIVVATPGRLLDHL 152
Query: 135 RNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIK 194
R S+ L + L+ DEADR+L++GF EI+ +++ P RQT+LFSAT ++ + L K
Sbjct: 153 RRG-SLSLMAIDTLVFDEADRMLDMGFMDEINAILKQLPTERQTLLFSATFSDAIYRLSK 211
Query: 195 LSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS-LCSKTFTSKVIIFSGTK 253
L+KP+R+ D + ++ + V +I + +++A L+S L +K +V+IFS K
Sbjct: 212 KLLSKPVRIEVD----KANSAADSVEQIVYAVDSDRKAALISHLINKYHWQQVLIFSRKK 267
Query: 254 QAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQ 313
Q A + A + A HG+L+Q R + L F+ ++ L+ATDVAARGLDI+ +
Sbjct: 268 QTADTITSKLVAAGVAAKAFHGDLSQGAREQVLNDFKAGNIKALVATDVAARGLDIVELN 327
Query: 314 TVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
V+NY P Y+HR+GRT RAG G A+T +++D
Sbjct: 328 YVVNYEIPFVAEDYIHRIGRTGRAGNSGKAITLYSEDD 365
>gi|261408394|ref|YP_003244635.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|329929405|ref|ZP_08283153.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
gi|261284857|gb|ACX66828.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
gi|328936492|gb|EGG32937.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
Length = 533
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 153/400 (38%), Positives = 229/400 (57%), Gaps = 25/400 (6%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L +L+A LG+ + TPIQ+ IP+ALTG+D+ G A TG+GKTAAF LP + ++
Sbjct: 6 DFGLEPRVLQAITELGFEEATPIQSQSIPIALTGKDMIGQAQTGTGKTAAFGLPLIHKIA 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+RI A LI+TPTRELA+QV I K+++F IR + GG Q AL+ P
Sbjct: 66 KEEERIVA---LIMTPTRELAIQVAEEIGKLSRFKGIRSLAIYGGQDIGRQIRALKRKPQ 122
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGR++DH+ N ++ LDD+ ++LDEAD +L++GF +I +++L P+ RQT+LF
Sbjct: 123 IIIGTPGRLLDHI-NRKTIRLDDVQTVVLDEADEMLDMGFMEDIQSILKLVPEERQTLLF 181
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ ++ +L L +P +S P + + + + ++ + LL + S
Sbjct: 182 SATMPANIQKLASQFLKEPEHVSVIPKHVSAPLIDQAYIEVPERQKFEALSRLLDMESPE 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
I+F TK+ L A LHG+L+Q QR + FR +D L+ATD
Sbjct: 242 LA---IVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLVATD 298
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLD+ GV V+N+ P+D SYVHR+GRT RAG+EG A +FVT + L I +
Sbjct: 299 VAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLYFIERV 358
Query: 362 AGSKL--------------KSRIVAEQSITKWSKIIEQME 387
++ K RI+AE+ + +IIEQ E
Sbjct: 359 TRHRIPRKPLPTIAEAIEGKQRIIAERVL----EIIEQGE 394
>gi|283779149|ref|YP_003369904.1| DEAD/DEAH box helicase [Pirellula staleyi DSM 6068]
gi|283437602|gb|ADB16044.1| DEAD/DEAH box helicase domain protein [Pirellula staleyi DSM 6068]
Length = 598
Score = 268 bits (684), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 137/371 (36%), Positives = 220/371 (59%), Gaps = 12/371 (3%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+L L+ PL+RA A Y++PT IQ IP A+ GRD+ G A TG+GKTAAFALP L+RL+
Sbjct: 5 DLGLAEPLVRALNAANYTEPTAIQLQAIPPAIAGRDLQGCAQTGTGKTAAFALPLLDRLI 64
Query: 62 YRPK------RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
P+ R+P R L+L+PTRELA Q+H + + + + GG+S Q
Sbjct: 65 KNPRQGKLRGRLP--RALVLSPTRELAGQIHDSVRRYGRHAMQNSLTIYGGVSQVPQVKG 122
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
L + D+++ATPGR+ D ++ ++L ++ V +LDEADR+L++GF +I ++ P++
Sbjct: 123 LNAGQDVLIATPGRLCDLMQQGY-INLSEIEVFVLDEADRMLDMGFMPDIRRIIAKLPQQ 181
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235
+QT+LFSAT+ ++ +L L P+ ++ +P +T+ + + ++ +L
Sbjct: 182 KQTLLFSATMPPEIQKLASQLLHDPVEINIEPERATADGITQSLYYVPTK---HKPELLA 238
Query: 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 295
S+ + ++ ++F TK ++ + LK +HGN +Q+ R L F+ H+
Sbjct: 239 SVLKREEVTRAVVFVRTKHGCNKAALQLEKTGLKVDAIHGNKSQSARQRTLYAFKNGHIQ 298
Query: 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355
L+ATDVAARGLD+ GV VINY P + +YVHR+GRT RAG+ G A++F D R LL
Sbjct: 299 VLVATDVAARGLDVTGVSHVINYDLPMEPETYVHRIGRTGRAGKSGIAISFCDDEQRGLL 358
Query: 356 KAIAKRAGSKL 366
+ + + G K+
Sbjct: 359 RDVQRILGKKI 369
>gi|320158915|ref|YP_004191293.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus MO6-24/O]
gi|319934227|gb|ADV89090.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus MO6-24/O]
Length = 509
Score = 268 bits (684), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 144/346 (41%), Positives = 211/346 (60%), Gaps = 5/346 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A + GY P+PIQ IP L G+D+ +A TG+GKTA F LP LERL
Sbjct: 6 LGLSAPILKAIQEKGYDTPSPIQLQAIPAILEGKDVMAAAQTGTGKTAGFTLPILERLAK 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ R IR LILTPTRELA QV + ++ D+ +V GG+ Q LR D
Sbjct: 66 GPRVRANHIRALILTPTRELAAQVQENVFMYSRHLDLNSAVVFGGVKINPQMLRLRKGAD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++D L + +V D L VLILDEADR+L++GF +I +++ L P +RQ +LF
Sbjct: 126 VLVATPGRLMD-LYSQNAVKFDQLEVLILDEADRMLDMGFIRDIRKILALLPAKRQNLLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++++ EL K + P+ +S +P+ T+ E+ + +++ + A+L L +
Sbjct: 185 SATFSDEIRELAKGLVNNPIEISVNPANSTARTV-EQCIYPADVKK--KPAMLAKLINDG 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++F+ TK A+RL L AA +HGN +Q R +AL F+ V L+ATD
Sbjct: 242 DWRQVLVFTRTKHGANRLAAFLTDQGLTAAAIHGNKSQGARTKALADFKSGEVRVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 347
+AARG+DI + V+N+ P+ YVHR+GRT RAG G A++ V
Sbjct: 302 IAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGETGKAISLV 347
>gi|443682977|gb|ELT87384.1| hypothetical protein CAPTEDRAFT_162583 [Capitella teleta]
Length = 460
Score = 268 bits (684), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 151/379 (39%), Positives = 217/379 (57%), Gaps = 4/379 (1%)
Query: 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 60
++L L+ L++ CEA+G ++PTPIQ C+P L+G D G A TGSGKTAAFALP L++L
Sbjct: 19 VDLGLNDWLVKQCEAVGMTRPTPIQLNCVPKILSGHDCIGCAKTGSGKTAAFALPILQKL 78
Query: 61 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
P I A L+LTPTRELA Q+ + + ++ ++ GG Q L P
Sbjct: 79 CEDPYGIFA---LVLTPTRELAYQIGEQFSVLGKPIGLKEAIITGGRDMIDQGLLLAQKP 135
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
+VV+TPGR+ DHLR + V L +A L++DEADRLLE F ++ + PK+RQT+L
Sbjct: 136 HVVVSTPGRLADHLRTNADVSLKKIAFLVMDEADRLLEDNFGEQLQTIFAALPKKRQTLL 195
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCS 239
FSAT+T+ + EL ++L KP + +LT++ V + +++ +L
Sbjct: 196 FSATMTDTLKELEDVALNKPFFWQSKDKVATVDSLTQQYVLMPADVKDAYLMHILRKFTE 255
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
+ +S V+IF+ T + L ++ L+ LH L Q RL +L F+ V + A
Sbjct: 256 ENPSSSVMIFTNTCKYCQILGLVAKEVGLECVSLHSYLMQKIRLSSLAKFKSHQVKIMFA 315
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVA+RGLDI V VIN+ P +YVHRVGRTARAGR G A+T VT D +L+ AI
Sbjct: 316 TDVASRGLDIPTVDLVINHNIPNKPKNYVHRVGRTARAGRLGDAITMVTQFDVNLVHAIE 375
Query: 360 KRAGSKLKSRIVAEQSITK 378
+KL V + + K
Sbjct: 376 DHINAKLVEHKVDDDEVAK 394
>gi|315648503|ref|ZP_07901602.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
gi|315276197|gb|EFU39543.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
Length = 536
Score = 268 bits (684), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 153/400 (38%), Positives = 228/400 (57%), Gaps = 25/400 (6%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L +L+A LG+ + TPIQ+ IP+ALTGRD+ G A TG+GKTAAF LP + ++
Sbjct: 6 DFGLEPRVLQAITELGFEEATPIQSQSIPIALTGRDMIGQAQTGTGKTAAFGLPLIHKIA 65
Query: 62 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
+RI + LI+TPTRELA+QV I K+++F IR + GG Q AL+ P
Sbjct: 66 KEEERIVS---LIMTPTRELAIQVAEEIGKLSRFKGIRSLAIYGGQDIGRQIRALKKKPQ 122
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
I++ TPGR++DH+ N ++ LDD+ ++LDEAD +L++GF +I +++L P+ RQT+LF
Sbjct: 123 IIIGTPGRLLDHI-NRKTIRLDDVQTVVLDEADEMLDMGFMEDIQSILKLVPEERQTLLF 181
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT+ ++ +L L P +S P + + + + ++ + LL + S
Sbjct: 182 SATMPANIQKLASQFLKDPEHVSVIPKHVSAPLIDQAYIEVPERQKFEALSRLLDMESPE 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
I+F TK+ L A LHG+L+Q QR + FR +D L+ATD
Sbjct: 242 LA---IVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLVATD 298
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361
VAARGLD+ GV V+N+ P+D SYVHR+GRT RAG+EG A +FVT + L I +
Sbjct: 299 VAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLYFIERV 358
Query: 362 AGSKL--------------KSRIVAEQSITKWSKIIEQME 387
++ K RI+AE+ + +IIEQ E
Sbjct: 359 TRHRIPRKPLPTIAEAIEGKQRIIAERVL----EIIEQGE 394
>gi|255544624|ref|XP_002513373.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223547281|gb|EEF48776.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 442
Score = 268 bits (684), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 148/366 (40%), Positives = 212/366 (57%), Gaps = 4/366 (1%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
EL + L+ AC+ LG+ PT IQ IP AL G+D+ G A TGSGKT AFALP L+ LL
Sbjct: 13 ELGVCDQLVTACDNLGWKNPTKIQIESIPHALEGKDLIGLAQTGSGKTGAFALPILQSLL 72
Query: 62 -YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 120
K + A +L+PTRELA+Q+ E + ++C ++VGG+ Q AL P
Sbjct: 73 EASEKSVQAFFACVLSPTRELAIQIAEQFEALGSDIGVKCAVLVGGVDMVQQSIALGKRP 132
Query: 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180
IVVATPGR++DHL N+ L L L+LDEADRLL F + E++++ P+ R+T L
Sbjct: 133 HIVVATPGRLVDHLSNTKGFSLRTLKYLVLDEADRLLNEDFEKSLDEILKVIPRERRTFL 192
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240
FSAT+T+ V +L + L P+++ A TL +E R + ++ L+ + ++
Sbjct: 193 FSATMTKKVKKLQRACLRNPVKIEAASKYSTVDTLKQEY---RFIPAKYKDCYLVYILTE 249
Query: 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 300
S ++F+ T A L ++ L+A ++G++TQ++RL AL F+ + LI T
Sbjct: 250 KSGSTSMVFTRTCDATTFLALVLRNLGLRAIPINGHMTQSKRLGALNKFKAGECNILICT 309
Query: 301 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360
DVA+RGLDI V VINY P + Y+HRVGRTARAGR G A++ V + I K
Sbjct: 310 DVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYEVEWFIQIEK 369
Query: 361 RAGSKL 366
G KL
Sbjct: 370 LIGKKL 375
>gi|388502288|gb|AFK39210.1| unknown [Lotus japonicus]
Length = 460
Score = 268 bits (684), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 152/402 (37%), Positives = 225/402 (55%), Gaps = 10/402 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L L+ L ACE LG+ P+ IQ +P+A RDI G A TGSGKT AFALP L+ LL
Sbjct: 15 LGLNDALCEACEKLGWKNPSKIQCEALPIAFQKRDIIGLAETGSGKTGAFALPILQALLA 74
Query: 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 122
P+R+ A L+LTPTRELA Q+ E + ++C ++VGG+ Q AL P I
Sbjct: 75 TPQRLFA---LVLTPTRELAYQISEQFEALGSSIGVKCAVIVGGMDMMSQSIALAKKPHI 131
Query: 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP--KRRQTML 180
V+ATPGR++DHL N+ L + L++DEADR+L + F ++ +++++ P R T L
Sbjct: 132 VIATPGRLVDHLENTKGFSLRSIQYLVMDEADRILNMDFEVDLDKILKILPPSSTRSTYL 191
Query: 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCS 239
+SAT+T+ V +L + SL P+++ L + + I + ++V ++L +
Sbjct: 192 YSATMTKKVAKLQRASLRDPIKIEVSDKYATVDKLQQTYLFIPSKFKDVYLVSILNDMSG 251
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
K+ +I+F+ T RL +L LHG ++Q +RL AL F+ + LIA
Sbjct: 252 KS----IIVFASTCTTTLRLALLTRNLGFTTVPLHGQMSQTKRLGALNKFKGKARSILIA 307
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359
TDVA+RGLDI V VINY P Y+HRVGRTARAGR G ++TFVT D L + I
Sbjct: 308 TDVASRGLDIPHVDVVINYDIPNHSKDYIHRVGRTARAGRSGKSITFVTQYDIELYQRIE 367
Query: 360 KRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 401
G +L + E + + + + + Q ++E +ER
Sbjct: 368 FLIGKQLPQYVTQEDEVMTLLERVNEADRQARIQMKEIEDER 409
>gi|421505460|ref|ZP_15952398.1| DEAD/DEAH box helicase [Pseudomonas mendocina DLHK]
gi|400343869|gb|EJO92241.1| DEAD/DEAH box helicase [Pseudomonas mendocina DLHK]
Length = 628
Score = 268 bits (684), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 149/367 (40%), Positives = 216/367 (58%), Gaps = 19/367 (5%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL- 61
L LS L+RA E+ GY++PTP+Q IP L GRD+ +A TG+GKTA FALP LERL
Sbjct: 6 LGLSEALVRAIESAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTAGFALPILERLFP 65
Query: 62 ---------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 112
+ P++ RVL+LTPTRELA QVH + A+ + GG+ Q
Sbjct: 66 AGHPDREQRHGPRQP---RVLVLTPTRELAAQVHDSFKIYARDLKFVSACIFGGVGMNPQ 122
Query: 113 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172
AL D++VA PGR++D L SVDL + +L+LDEADR+L++GF ++ +++
Sbjct: 123 VQALAKGVDVLVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFIHDVKKVLARL 181
Query: 173 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMREVNQE 231
P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+ ++
Sbjct: 182 PAQRQNLLFSATFSKDITDLAGKLLHNPERIEVTP----PNTTVERIEQRVFRLAASHKR 237
Query: 232 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 291
A+L L ++ +V++F+ TK A+RL L A +HGN +Q R +AL F+
Sbjct: 238 ALLAHLITQGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKA 297
Query: 292 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351
V L+ATD+AARGLDI + V+N+ P YVHR+GRT RAGR G A++ V ++
Sbjct: 298 NKVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357
Query: 352 RSLLKAI 358
LLK+I
Sbjct: 358 EKLLKSI 364
>gi|326793753|ref|YP_004311573.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
gi|326544517|gb|ADZ89737.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
MMB-1]
Length = 425
Score = 268 bits (684), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 151/359 (42%), Positives = 220/359 (61%), Gaps = 9/359 (2%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L A ++ GYS+P+PIQA IP L G+D+ +A TG+GKTA F LP LE L
Sbjct: 6 LGLSAPILDAIKSQGYSEPSPIQAMAIPAVLEGKDVMAAAQTGTGKTAGFTLPILELLSK 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
K R +R L+LTPTRELA QVH +Q +R +V GG+ Q LR D
Sbjct: 66 GEKARSNNVRALVLTPTRELAAQVHENAAAYSQNLPLRAEVVFGGVKINPQMMKLRRGVD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++D L + ++ L +L+LDEADR+L++GF +I +++L PK RQT+LF
Sbjct: 126 VLVATPGRLLD-LFSQNAISFKQLEILVLDEADRMLDMGFIHDIKRILKLLPKERQTLLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVR--IRRMREVNQEAVLLSLCS 239
SAT ++D+ EL + + + +S P P+T T EV+R + + + + A L L
Sbjct: 185 SATFSDDIRELAQNVVKDAVEVSVTP----PNT-TVEVIRQSLIPVDKSKKSAALKFLIQ 239
Query: 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299
S+V++FS TK A+RL LF A ++AA +HGN +Q R +AL F+ + L+A
Sbjct: 240 SRDLSQVLVFSRTKHGANRLATLFQKAGIEAAAIHGNKSQGARTKALAGFKSGEIRVLVA 299
Query: 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358
TD+AARG+DI + V+N+ P YVHR+GRT RAG G A++ V++++ L I
Sbjct: 300 TDIAARGIDIDQLPHVVNFDLPNVPADYVHRIGRTGRAGATGEAISLVSEDEADQLSDI 358
>gi|27367036|ref|NP_762563.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus CMCP6]
gi|27358604|gb|AAO07553.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus CMCP6]
Length = 509
Score = 268 bits (684), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 144/346 (41%), Positives = 210/346 (60%), Gaps = 5/346 (1%)
Query: 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 62
L LS P+L+A + GY P+PIQ IP L G+D+ +A TG+GKTA F LP LERL
Sbjct: 6 LGLSAPILKAIQEKGYDTPSPIQLQAIPAILEGKDVMAAAQTGTGKTAGFTLPILERLAK 65
Query: 63 RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 121
P+ R IR LILTPTRELA QV + ++ D+ +V GG+ Q LR D
Sbjct: 66 GPRVRANHIRALILTPTRELAAQVQENVFMYSRHLDLNSAVVFGGVKINPQMLRLRKGAD 125
Query: 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181
++VATPGR++D L + +V D L VLILDEADR+L++GF +I +++ L P +RQ +LF
Sbjct: 126 VLVATPGRLMD-LYSQNAVKFDQLEVLILDEADRMLDMGFIRDIRKILALLPAKRQNLLF 184
Query: 182 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241
SAT ++++ EL K + P+ +S +P+ T+ E+ + +++ + A+L L
Sbjct: 185 SATFSDEIRELAKGLVNNPIEISVNPANSTARTV-EQCIYPADVKK--KPAMLAKLIKDG 241
Query: 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301
+V++F+ TK A+RL L AA +HGN +Q R +AL F+ V L+ATD
Sbjct: 242 DWQQVLVFTRTKHGANRLAAFLTDQGLTAAAIHGNKSQGARTKALADFKSGEVRVLVATD 301
Query: 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 347
+AARG+DI + V+N+ P+ YVHR+GRT RAG G A++ V
Sbjct: 302 IAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGETGKAISLV 347
>gi|319944378|ref|ZP_08018652.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
gi|319742339|gb|EFV94752.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
Length = 546
Score = 268 bits (684), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 149/368 (40%), Positives = 220/368 (59%), Gaps = 16/368 (4%)
Query: 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 61
+ L +L+A A GY+KPTPIQA IP+ + G D+ +A TG+GKTA FALP + L+
Sbjct: 22 DFGLHPDVLKAVTAAGYTKPTPIQAKAIPVVMAGHDVMAAAQTGTGKTAGFALPIINVLM 81
Query: 62 ------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115
P R P +R LI+ PTRELA Q+H ++ QFT +R V GG+ + Q A
Sbjct: 82 PSASHSASPARHP-VRALIIAPTRELADQIHDNVKTYIQFTPLRSAAVFGGVDMQPQTNA 140
Query: 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175
LR+ +I++ATPGR++DH++ SV+L + +L+LDEADR+L++GF +I ++ L R
Sbjct: 141 LRAGVEILIATPGRLLDHVQQK-SVNLSQVQLLVLDEADRMLDMGFLPDIQRIINLLNPR 199
Query: 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV---VRIRRMREVNQEA 232
RQ ++FSAT ++++ +L K L +P + RP+TL E V V ++ ++A
Sbjct: 200 RQNLMFSATFSDEIRKLAKRFLNEPKLIEV----ARPNTLAENVEQTVYHVPSEDLKRDA 255
Query: 233 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 292
V +L + +VI+FS TK A RL A +HG+ +Q +RL+ L+ F+
Sbjct: 256 VG-ALIRERGIEQVIVFSNTKIGAGRLARHLQKEGFLAEAIHGDKSQQERLKTLDGFKAG 314
Query: 293 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 352
+ L+ATDVAARGLDI + VINY P YVHR+GRT RAG G A++ + D+D+
Sbjct: 315 EIKVLVATDVAARGLDIAELPAVINYDLPHSPEDYVHRIGRTGRAGASGMALSLMVDHDQ 374
Query: 353 SLLKAIAK 360
L I K
Sbjct: 375 KALAEIEK 382
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.131 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,143,071,411
Number of Sequences: 23463169
Number of extensions: 319904201
Number of successful extensions: 2126295
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 31901
Number of HSP's successfully gapped in prelim test: 29084
Number of HSP's that attempted gapping in prelim test: 1783246
Number of HSP's gapped (non-prelim): 162396
length of query: 602
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 453
effective length of database: 8,863,183,186
effective search space: 4015021983258
effective search space used: 4015021983258
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 80 (35.4 bits)