Query 007481
Match_columns 602
No_of_seqs 384 out of 3100
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 11:11:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007481.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007481hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0338 ATP-dependent RNA heli 100.0 2E-100 3E-105 776.3 37.9 441 2-442 185-628 (691)
2 KOG0330 ATP-dependent RNA heli 100.0 7.8E-75 1.7E-79 573.4 31.9 372 2-379 65-436 (476)
3 COG0513 SrmB Superfamily II DN 100.0 2E-67 4.4E-72 575.8 41.7 361 2-366 33-397 (513)
4 KOG0331 ATP-dependent RNA heli 100.0 4E-68 8.6E-73 559.3 34.3 356 2-361 95-459 (519)
5 KOG0340 ATP-dependent RNA heli 100.0 2.7E-67 5.8E-72 514.3 32.8 371 2-378 11-389 (442)
6 KOG0345 ATP-dependent RNA heli 100.0 1.8E-64 3.8E-69 510.3 40.2 357 2-361 10-375 (567)
7 KOG0343 RNA Helicase [RNA proc 100.0 6E-65 1.3E-69 521.0 37.2 423 2-444 73-501 (758)
8 KOG0342 ATP-dependent RNA heli 100.0 1.6E-64 3.4E-69 514.2 32.9 377 2-384 86-468 (543)
9 KOG0328 Predicted ATP-dependen 100.0 5.3E-65 1.1E-69 483.7 26.5 363 2-370 31-393 (400)
10 KOG0333 U5 snRNP-like RNA heli 100.0 5.6E-64 1.2E-68 511.7 32.3 357 2-362 249-636 (673)
11 PRK04837 ATP-dependent RNA hel 100.0 2.1E-62 4.5E-67 529.1 41.5 362 2-367 12-379 (423)
12 PRK11634 ATP-dependent RNA hel 100.0 2.1E-61 4.5E-66 537.9 50.2 365 2-373 10-375 (629)
13 KOG0346 RNA helicase [RNA proc 100.0 8E-63 1.7E-67 494.0 34.2 414 2-421 23-486 (569)
14 PRK10590 ATP-dependent RNA hel 100.0 3.5E-61 7.5E-66 523.4 42.5 361 2-366 5-368 (456)
15 PRK11776 ATP-dependent RNA hel 100.0 5.5E-61 1.2E-65 523.6 42.5 359 2-368 8-367 (460)
16 PRK04537 ATP-dependent RNA hel 100.0 6.2E-61 1.3E-65 531.2 42.2 363 2-367 13-381 (572)
17 PTZ00110 helicase; Provisional 100.0 2.4E-60 5.1E-65 524.8 43.3 356 2-361 134-495 (545)
18 PRK11192 ATP-dependent RNA hel 100.0 4.4E-60 9.6E-65 513.1 43.9 360 2-364 5-366 (434)
19 KOG0347 RNA helicase [RNA proc 100.0 1.7E-61 3.7E-66 495.6 25.0 362 2-367 185-587 (731)
20 KOG0348 ATP-dependent RNA heli 100.0 2.3E-60 5E-65 486.0 29.8 360 2-361 140-565 (708)
21 PLN00206 DEAD-box ATP-dependen 100.0 5.6E-59 1.2E-63 512.3 41.4 356 2-362 125-487 (518)
22 KOG0336 ATP-dependent RNA heli 100.0 4.2E-60 9.1E-65 469.8 27.4 354 3-360 225-582 (629)
23 PRK01297 ATP-dependent RNA hel 100.0 6.5E-58 1.4E-62 500.8 43.9 362 2-367 91-459 (475)
24 KOG0326 ATP-dependent RNA heli 100.0 1.2E-60 2.6E-65 460.8 18.8 359 2-368 89-447 (459)
25 KOG0335 ATP-dependent RNA heli 100.0 2.2E-58 4.7E-63 477.5 27.8 354 4-361 80-455 (482)
26 KOG0341 DEAD-box protein abstr 100.0 2.3E-59 4.9E-64 461.8 16.2 345 2-351 174-529 (610)
27 PTZ00424 helicase 45; Provisio 100.0 5.5E-56 1.2E-60 476.9 41.2 361 2-368 32-392 (401)
28 KOG0339 ATP-dependent RNA heli 100.0 2E-56 4.3E-61 454.0 30.2 357 2-361 227-586 (731)
29 KOG0337 ATP-dependent RNA heli 100.0 5.9E-56 1.3E-60 442.8 22.8 360 2-367 25-385 (529)
30 KOG0332 ATP-dependent RNA heli 100.0 6.7E-55 1.5E-59 429.3 26.0 362 1-370 93-464 (477)
31 KOG0327 Translation initiation 100.0 7.8E-55 1.7E-59 433.1 24.6 358 2-368 30-388 (397)
32 KOG0350 DEAD-box ATP-dependent 100.0 5.7E-54 1.2E-58 436.6 28.1 354 6-364 145-554 (620)
33 KOG0334 RNA helicase [RNA proc 100.0 1.6E-53 3.6E-58 469.0 30.4 367 2-372 369-740 (997)
34 TIGR03817 DECH_helic helicase/ 100.0 2.4E-51 5.1E-56 465.7 39.6 367 4-382 20-420 (742)
35 KOG0344 ATP-dependent RNA heli 100.0 5.7E-50 1.2E-54 417.0 25.8 357 3-361 141-506 (593)
36 KOG4284 DEAD box protein [Tran 100.0 3E-50 6.6E-55 418.5 23.2 346 2-352 29-381 (980)
37 PLN03137 ATP-dependent DNA hel 100.0 1.3E-47 2.9E-52 432.5 41.6 338 3-360 442-797 (1195)
38 TIGR00614 recQ_fam ATP-depende 100.0 3.9E-48 8.5E-53 422.4 35.5 327 14-361 5-344 (470)
39 PRK11057 ATP-dependent DNA hel 100.0 5.1E-46 1.1E-50 416.2 39.6 335 3-360 7-353 (607)
40 TIGR01389 recQ ATP-dependent D 100.0 5E-45 1.1E-49 409.1 38.1 324 15-361 8-342 (591)
41 PRK13767 ATP-dependent helicas 100.0 1.1E-44 2.3E-49 419.1 37.9 339 5-348 18-396 (876)
42 PRK02362 ski2-like helicase; P 100.0 9.6E-45 2.1E-49 415.6 35.1 331 2-351 5-398 (737)
43 TIGR02621 cas3_GSU0051 CRISPR- 100.0 6.7E-44 1.5E-48 397.6 35.3 316 16-349 12-390 (844)
44 PRK00254 ski2-like helicase; P 100.0 1.9E-43 4.1E-48 403.9 36.4 332 2-351 5-389 (720)
45 TIGR00580 mfd transcription-re 100.0 8.7E-43 1.9E-47 399.4 37.9 334 3-361 434-787 (926)
46 KOG0329 ATP-dependent RNA heli 100.0 6.5E-45 1.4E-49 341.9 15.2 320 2-363 46-369 (387)
47 PRK10689 transcription-repair 100.0 1.3E-41 2.8E-46 397.5 38.8 318 8-350 589-919 (1147)
48 PRK09401 reverse gyrase; Revie 100.0 2.7E-41 5.9E-46 395.6 36.6 283 16-322 77-410 (1176)
49 COG1201 Lhr Lhr-like helicases 100.0 3.8E-41 8.3E-46 373.6 35.8 376 4-386 7-400 (814)
50 PRK10917 ATP-dependent DNA hel 100.0 6.9E-41 1.5E-45 378.8 38.0 317 7-348 248-587 (681)
51 PRK01172 ski2-like helicase; P 100.0 9.3E-41 2E-45 380.0 35.0 336 2-358 5-387 (674)
52 TIGR00643 recG ATP-dependent D 100.0 2.1E-40 4.6E-45 372.5 37.3 317 8-348 224-564 (630)
53 PRK09751 putative ATP-dependen 100.0 8.6E-40 1.9E-44 383.8 37.5 342 40-385 1-422 (1490)
54 COG0514 RecQ Superfamily II DN 100.0 9.2E-40 2E-44 350.8 30.4 326 14-361 11-348 (590)
55 PRK14701 reverse gyrase; Provi 100.0 4.5E-39 9.8E-44 384.1 37.6 292 9-322 68-412 (1638)
56 TIGR01054 rgy reverse gyrase. 100.0 2E-38 4.2E-43 372.1 37.9 291 9-322 67-409 (1171)
57 COG1111 MPH1 ERCC4-like helica 100.0 7.1E-39 1.5E-43 329.4 29.7 331 17-357 12-488 (542)
58 PHA02653 RNA helicase NPH-II; 100.0 1.2E-38 2.7E-43 353.9 32.5 314 22-352 166-516 (675)
59 PRK12898 secA preprotein trans 100.0 4E-37 8.6E-42 336.7 37.1 322 15-354 99-590 (656)
60 PHA02558 uvsW UvsW helicase; P 100.0 6.3E-38 1.4E-42 344.0 30.0 305 18-342 112-444 (501)
61 TIGR01970 DEAH_box_HrpB ATP-de 100.0 6.2E-37 1.3E-41 347.9 33.6 308 24-353 6-339 (819)
62 PRK09200 preprotein translocas 100.0 6.8E-36 1.5E-40 333.6 39.9 321 15-354 74-545 (790)
63 TIGR00603 rad25 DNA repair hel 100.0 2.8E-38 6E-43 349.5 18.2 317 19-361 254-618 (732)
64 PRK11664 ATP-dependent RNA hel 100.0 1.8E-36 3.8E-41 345.0 31.2 306 26-353 11-342 (812)
65 TIGR03714 secA2 accessory Sec 100.0 5.1E-35 1.1E-39 323.6 38.3 321 15-354 66-541 (762)
66 TIGR01587 cas3_core CRISPR-ass 100.0 2.6E-36 5.6E-41 319.3 26.9 302 37-351 1-337 (358)
67 KOG0354 DEAD-box like helicase 100.0 5.1E-36 1.1E-40 325.2 29.5 330 17-355 59-534 (746)
68 PRK13766 Hef nuclease; Provisi 100.0 3.3E-35 7.1E-40 340.3 38.1 329 17-354 12-483 (773)
69 TIGR00963 secA preprotein tran 100.0 8.1E-35 1.8E-39 320.0 38.7 323 15-355 52-522 (745)
70 COG1202 Superfamily II helicas 100.0 6.3E-36 1.4E-40 309.0 25.6 334 2-350 198-553 (830)
71 COG0556 UvrB Helicase subunit 100.0 5.1E-36 1.1E-40 308.5 23.9 264 174-451 385-657 (663)
72 KOG0349 Putative DEAD-box RNA 100.0 6.7E-37 1.4E-41 306.4 15.9 289 68-357 285-622 (725)
73 COG1204 Superfamily II helicas 100.0 1.2E-34 2.5E-39 326.3 28.2 335 4-349 15-407 (766)
74 TIGR03158 cas3_cyano CRISPR-as 100.0 8.1E-34 1.8E-38 298.5 31.3 290 24-335 1-357 (357)
75 KOG0352 ATP-dependent DNA heli 100.0 3.2E-34 7E-39 287.0 25.0 334 8-361 6-373 (641)
76 COG1205 Distinct helicase fami 100.0 6.2E-33 1.3E-37 316.4 33.0 337 7-350 57-422 (851)
77 PRK04914 ATP-dependent helicas 100.0 6.3E-32 1.4E-36 308.8 36.4 335 20-362 152-615 (956)
78 KOG0952 DNA/RNA helicase MER3/ 100.0 8.7E-33 1.9E-37 302.6 26.1 344 14-361 104-502 (1230)
79 KOG0351 ATP-dependent DNA heli 100.0 1.7E-32 3.7E-37 310.6 25.3 334 8-361 252-603 (941)
80 PRK11131 ATP-dependent RNA hel 100.0 9.7E-32 2.1E-36 311.0 29.7 300 27-353 81-414 (1294)
81 PRK05580 primosome assembly pr 100.0 1.6E-30 3.5E-35 293.4 34.5 320 20-359 144-558 (679)
82 COG1061 SSL2 DNA or RNA helica 100.0 5.3E-31 1.1E-35 284.0 26.3 293 19-336 35-375 (442)
83 KOG1123 RNA polymerase II tran 100.0 4.1E-33 8.8E-38 283.8 7.1 402 18-467 300-753 (776)
84 KOG0353 ATP-dependent DNA heli 100.0 7.2E-30 1.6E-34 252.3 27.8 339 2-357 75-474 (695)
85 cd00268 DEADc DEAD-box helicas 100.0 1.2E-29 2.5E-34 246.7 25.3 200 2-203 3-202 (203)
86 PRK12899 secA preprotein trans 100.0 3.7E-28 8.1E-33 270.3 39.8 147 2-157 66-228 (970)
87 PRK13104 secA preprotein trans 100.0 2.5E-28 5.4E-33 272.3 37.1 318 20-354 82-591 (896)
88 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.3E-29 2.8E-34 294.5 27.9 315 15-353 59-407 (1283)
89 PRK09694 helicase Cas3; Provis 100.0 1.3E-28 2.8E-33 280.0 33.2 314 18-339 284-664 (878)
90 KOG0951 RNA helicase BRR2, DEA 100.0 5.1E-29 1.1E-33 275.9 26.6 350 5-361 296-713 (1674)
91 PRK12904 preprotein translocas 100.0 1.4E-27 3.1E-32 266.2 38.3 322 15-354 77-577 (830)
92 COG1200 RecG RecG-like helicas 100.0 9.7E-28 2.1E-32 257.4 32.1 322 4-351 246-592 (677)
93 TIGR00595 priA primosomal prot 100.0 1.9E-28 4.2E-33 267.3 26.6 299 39-358 1-389 (505)
94 PRK12906 secA preprotein trans 100.0 9.8E-27 2.1E-31 258.5 37.7 322 15-354 76-557 (796)
95 TIGR00631 uvrb excinuclease AB 100.0 1.2E-27 2.5E-32 267.1 27.4 203 241-448 440-653 (655)
96 COG1197 Mfd Transcription-repa 100.0 1.3E-26 2.8E-31 261.3 32.6 322 3-350 577-913 (1139)
97 KOG0947 Cytoplasmic exosomal R 100.0 1.5E-26 3.2E-31 251.3 30.3 325 15-358 293-733 (1248)
98 PRK11448 hsdR type I restricti 100.0 1.5E-26 3.1E-31 270.5 31.7 309 19-337 412-800 (1123)
99 PLN03142 Probable chromatin-re 100.0 2.4E-26 5.1E-31 264.0 32.0 326 20-358 169-609 (1033)
100 COG4098 comFA Superfamily II D 99.9 2.2E-25 4.7E-30 219.0 30.3 313 20-359 97-425 (441)
101 COG4581 Superfamily II RNA hel 99.9 1E-25 2.2E-30 254.1 32.1 331 12-359 112-548 (1041)
102 PRK13107 preprotein translocas 99.9 1.6E-25 3.5E-30 249.1 33.1 321 16-354 79-595 (908)
103 KOG0948 Nuclear exosomal RNA h 99.9 4.1E-26 9E-31 242.3 24.4 320 20-359 129-549 (1041)
104 KOG0385 Chromatin remodeling c 99.9 1.1E-25 2.4E-30 240.2 26.9 316 20-353 167-602 (971)
105 PRK05298 excinuclease ABC subu 99.9 1.6E-24 3.4E-29 243.7 31.7 189 242-451 445-646 (652)
106 PF00270 DEAD: DEAD/DEAH box h 99.9 2.2E-25 4.7E-30 209.8 19.5 165 22-191 1-168 (169)
107 KOG0950 DNA polymerase theta/e 99.9 5E-24 1.1E-28 233.5 22.6 341 5-360 208-621 (1008)
108 KOG0387 Transcription-coupled 99.9 2.6E-22 5.6E-27 215.7 27.9 328 19-358 204-666 (923)
109 COG1110 Reverse gyrase [DNA re 99.9 5.8E-22 1.2E-26 218.3 30.9 280 16-321 79-416 (1187)
110 COG1203 CRISPR-associated heli 99.9 3.1E-22 6.7E-27 228.3 24.5 328 20-355 195-555 (733)
111 KOG0384 Chromodomain-helicase 99.9 2.2E-22 4.8E-27 224.4 19.8 329 19-361 369-824 (1373)
112 PRK12900 secA preprotein trans 99.9 8.6E-21 1.9E-25 212.3 32.2 124 229-354 582-715 (1025)
113 TIGR01407 dinG_rel DnaQ family 99.9 2.1E-20 4.5E-25 217.5 32.4 331 5-350 231-814 (850)
114 COG1643 HrpA HrpA-like helicas 99.9 4.4E-21 9.5E-26 215.7 25.6 307 23-351 53-388 (845)
115 TIGR00348 hsdR type I site-spe 99.9 2.9E-20 6.3E-25 210.1 28.5 303 20-337 238-634 (667)
116 COG1198 PriA Primosomal protei 99.9 2.5E-20 5.4E-25 206.7 26.7 340 3-361 159-614 (730)
117 KOG0922 DEAH-box RNA helicase 99.9 5.3E-20 1.1E-24 196.2 23.8 304 27-352 58-392 (674)
118 PRK12326 preprotein translocas 99.9 2.8E-18 6.1E-23 187.5 37.6 322 15-354 74-551 (764)
119 smart00487 DEXDc DEAD-like hel 99.9 7.1E-20 1.5E-24 175.5 21.8 188 15-207 3-192 (201)
120 KOG0389 SNF2 family DNA-depend 99.9 6.1E-20 1.3E-24 197.3 23.1 326 17-353 397-891 (941)
121 KOG0392 SNF2 family DNA-depend 99.8 1.1E-19 2.4E-24 202.3 24.3 325 20-353 975-1457(1549)
122 KOG0386 Chromatin remodeling c 99.8 1E-20 2.2E-25 207.6 15.6 323 19-357 393-843 (1157)
123 COG4096 HsdR Type I site-speci 99.8 8.4E-20 1.8E-24 198.8 21.9 300 17-337 162-525 (875)
124 PRK13103 secA preprotein trans 99.8 4.5E-18 9.8E-23 190.1 33.2 321 15-354 78-595 (913)
125 KOG0920 ATP-dependent RNA heli 99.8 1.7E-19 3.6E-24 202.2 20.9 316 22-351 175-545 (924)
126 KOG0390 DNA repair protein, SN 99.8 2.2E-18 4.9E-23 190.2 29.2 327 19-353 237-710 (776)
127 KOG0923 mRNA splicing factor A 99.8 5E-19 1.1E-23 186.8 21.9 305 22-349 267-605 (902)
128 PRK12903 secA preprotein trans 99.8 4.6E-17 1E-21 180.3 36.5 321 15-354 74-543 (925)
129 PRK07246 bifunctional ATP-depe 99.8 1.8E-17 3.8E-22 190.7 28.7 325 17-361 243-796 (820)
130 KOG0924 mRNA splicing factor A 99.8 9.7E-18 2.1E-22 177.4 21.7 306 24-350 360-697 (1042)
131 CHL00122 secA preprotein trans 99.8 3E-16 6.6E-21 174.9 33.0 323 15-355 72-636 (870)
132 KOG0926 DEAH-box RNA helicase 99.8 1.1E-17 2.4E-22 179.6 18.3 305 28-349 264-703 (1172)
133 KOG0949 Predicted helicase, DE 99.8 3.9E-17 8.4E-22 178.8 21.5 160 20-187 511-673 (1330)
134 KOG1000 Chromatin remodeling p 99.8 1.5E-16 3.3E-21 163.3 24.2 317 19-352 197-605 (689)
135 KOG0388 SNF2 family DNA-depend 99.7 2.1E-16 4.6E-21 167.6 21.9 114 240-353 1041-1157(1185)
136 PRK12902 secA preprotein trans 99.7 1.7E-14 3.7E-19 160.7 35.2 130 16-156 82-217 (939)
137 PF00271 Helicase_C: Helicase 99.7 2.4E-17 5.3E-22 134.4 8.1 78 261-338 1-78 (78)
138 cd00079 HELICc Helicase superf 99.7 7.9E-17 1.7E-21 144.4 12.1 117 230-346 13-131 (131)
139 KOG4150 Predicted ATP-dependen 99.7 4.6E-16 1E-20 161.7 18.1 342 13-363 279-655 (1034)
140 COG4889 Predicted helicase [Ge 99.7 8.4E-17 1.8E-21 174.0 12.8 319 17-347 158-585 (1518)
141 cd00046 DEXDc DEAD-like helica 99.7 8.2E-16 1.8E-20 138.5 17.3 144 36-185 1-144 (144)
142 TIGR03117 cas_csf4 CRISPR-asso 99.7 1.8E-14 3.9E-19 159.2 30.8 80 241-322 468-561 (636)
143 KOG0391 SNF2 family DNA-depend 99.7 2.7E-15 5.8E-20 166.1 24.0 112 240-351 1273-1388(1958)
144 PRK08074 bifunctional ATP-depe 99.7 6.8E-15 1.5E-19 172.3 28.9 121 241-361 750-906 (928)
145 PF04851 ResIII: Type III rest 99.7 3E-16 6.4E-21 149.3 11.6 152 20-186 3-183 (184)
146 KOG1002 Nucleotide excision re 99.6 6.8E-14 1.5E-18 143.8 24.3 113 240-352 635-751 (791)
147 KOG0953 Mitochondrial RNA heli 99.6 3.3E-15 7.2E-20 155.7 14.7 278 36-360 191-486 (700)
148 KOG0925 mRNA splicing factor A 99.6 2.3E-14 5E-19 147.2 18.7 303 22-350 49-387 (699)
149 TIGR00604 rad3 DNA repair heli 99.6 1.5E-13 3.3E-18 157.3 26.0 76 15-93 5-84 (705)
150 KOG4439 RNA polymerase II tran 99.6 3.6E-14 7.8E-19 151.4 18.8 111 241-351 744-859 (901)
151 KOG0951 RNA helicase BRR2, DEA 99.6 4.5E-14 9.7E-19 158.5 20.2 316 19-359 1142-1503(1674)
152 COG1199 DinG Rad3-related DNA 99.6 2.1E-13 4.6E-18 155.6 26.2 106 241-349 477-616 (654)
153 PRK12901 secA preprotein trans 99.6 2.4E-12 5.2E-17 145.2 32.1 111 241-354 626-745 (1112)
154 PF06862 DUF1253: Protein of u 99.6 1E-12 2.2E-17 138.6 27.2 297 63-359 31-424 (442)
155 PRK11747 dinG ATP-dependent DN 99.6 5.2E-12 1.1E-16 143.8 33.1 105 242-350 533-674 (697)
156 smart00490 HELICc helicase sup 99.5 1.7E-14 3.6E-19 118.0 8.2 81 258-338 2-82 (82)
157 COG0553 HepA Superfamily II DN 99.5 1.1E-12 2.3E-17 154.9 25.9 107 245-351 713-823 (866)
158 PRK14873 primosome assembly pr 99.5 1.4E-12 3.1E-17 146.0 23.0 139 39-193 164-311 (665)
159 KOG1015 Transcription regulato 99.5 9E-13 1.9E-17 144.1 19.2 145 233-377 1130-1304(1567)
160 PF02399 Herpes_ori_bp: Origin 99.4 1.1E-11 2.4E-16 137.3 20.4 288 37-350 51-388 (824)
161 TIGR02562 cas3_yersinia CRISPR 99.4 2.8E-11 6.1E-16 137.3 23.9 312 20-339 408-881 (1110)
162 KOG2340 Uncharacterized conser 99.4 4.3E-11 9.4E-16 124.6 21.1 342 17-359 213-677 (698)
163 PF00176 SNF2_N: SNF2 family N 99.3 7.3E-12 1.6E-16 128.8 12.2 153 24-187 1-174 (299)
164 COG0610 Type I site-specific r 99.3 1.2E-09 2.7E-14 127.8 30.8 299 36-348 274-651 (962)
165 COG0653 SecA Preprotein transl 99.3 1.2E-10 2.6E-15 130.0 20.6 319 22-354 80-549 (822)
166 PF07652 Flavi_DEAD: Flaviviru 99.3 1.6E-11 3.5E-16 109.2 10.4 136 35-190 4-141 (148)
167 smart00488 DEXDc2 DEAD-like he 99.2 3.1E-10 6.7E-15 116.0 14.7 76 16-92 5-84 (289)
168 smart00489 DEXDc3 DEAD-like he 99.2 3.1E-10 6.7E-15 116.0 14.7 76 16-92 5-84 (289)
169 KOG1016 Predicted DNA helicase 99.0 7E-08 1.5E-12 104.6 21.9 134 243-376 719-875 (1387)
170 PF07517 SecA_DEAD: SecA DEAD- 98.9 6.7E-08 1.4E-12 96.6 15.8 132 15-157 73-210 (266)
171 KOG0921 Dosage compensation co 98.7 6.5E-08 1.4E-12 106.6 11.9 311 29-349 387-773 (1282)
172 TIGR00596 rad1 DNA repair prot 98.6 2.3E-06 5.1E-11 98.1 18.4 69 118-187 6-74 (814)
173 PRK15483 type III restriction- 98.5 9.5E-07 2E-11 101.4 14.3 70 293-362 501-580 (986)
174 COG3587 Restriction endonuclea 98.5 5E-06 1.1E-10 92.2 18.9 71 292-362 482-565 (985)
175 KOG1132 Helicase of the DEAD s 98.5 3.2E-05 6.9E-10 86.4 24.9 79 243-322 561-656 (945)
176 KOG0952 DNA/RNA helicase MER3/ 98.5 2E-08 4.3E-13 112.6 -0.0 260 20-292 927-1204(1230)
177 KOG1001 Helicase-like transcri 98.5 5.4E-07 1.2E-11 101.1 9.8 101 245-345 541-643 (674)
178 PF13086 AAA_11: AAA domain; P 98.4 4E-06 8.7E-11 82.5 13.3 71 20-91 1-75 (236)
179 PF13307 Helicase_C_2: Helicas 98.3 2.8E-06 6.1E-11 79.8 8.8 106 242-349 8-149 (167)
180 PF13604 AAA_30: AAA domain; P 98.2 6.9E-06 1.5E-10 79.2 9.6 123 20-183 1-129 (196)
181 KOG1802 RNA helicase nonsense 98.1 4.7E-05 1E-09 82.3 13.1 85 12-105 402-486 (935)
182 PF13872 AAA_34: P-loop contai 98.0 4E-05 8.7E-10 77.1 11.6 161 20-191 37-226 (303)
183 TIGR01447 recD exodeoxyribonuc 98.0 6.6E-05 1.4E-09 84.0 13.4 143 22-183 147-294 (586)
184 PF02562 PhoH: PhoH-like prote 98.0 1.1E-05 2.4E-10 77.6 5.9 145 20-184 4-155 (205)
185 PRK10536 hypothetical protein; 98.0 0.00014 3E-09 72.1 13.4 143 17-182 56-210 (262)
186 PRK10875 recD exonuclease V su 97.9 0.00011 2.4E-09 82.4 14.0 143 22-184 154-301 (615)
187 PF09848 DUF2075: Uncharacteri 97.9 5.2E-05 1.1E-09 80.1 9.9 108 37-171 3-117 (352)
188 KOG1803 DNA helicase [Replicat 97.9 5.5E-05 1.2E-09 81.5 9.8 64 20-89 185-249 (649)
189 PF13245 AAA_19: Part of AAA d 97.8 6.2E-05 1.4E-09 60.6 7.2 60 28-89 2-62 (76)
190 TIGR01448 recD_rel helicase, p 97.8 0.00025 5.4E-09 81.6 14.1 128 16-183 320-451 (720)
191 TIGR00376 DNA helicase, putati 97.7 0.00031 6.8E-09 79.6 13.5 67 19-91 156-223 (637)
192 PF12340 DUF3638: Protein of u 97.7 0.00022 4.7E-09 69.4 10.0 133 20-158 23-186 (229)
193 PRK08181 transposase; Validate 97.5 0.0038 8.2E-08 63.1 15.4 130 12-189 76-213 (269)
194 PRK06526 transposase; Provisio 97.4 0.0025 5.3E-08 64.0 13.5 45 144-188 159-204 (254)
195 TIGR02768 TraA_Ti Ti-type conj 97.4 0.003 6.6E-08 73.0 15.3 75 5-86 338-413 (744)
196 KOG0383 Predicted helicase [Ge 97.3 3.2E-05 6.9E-10 86.2 -2.0 65 241-306 629-696 (696)
197 PF00580 UvrD-helicase: UvrD/R 97.3 0.00065 1.4E-08 70.0 7.9 124 21-154 1-125 (315)
198 PRK14722 flhF flagellar biosyn 97.3 0.0055 1.2E-07 64.6 14.5 131 35-196 137-269 (374)
199 PRK13889 conjugal transfer rel 97.3 0.004 8.7E-08 73.3 14.8 125 16-183 343-469 (988)
200 smart00492 HELICc3 helicase su 97.2 0.0023 5E-08 58.1 9.8 50 273-322 27-79 (141)
201 PF13401 AAA_22: AAA domain; P 97.2 0.0007 1.5E-08 60.3 5.9 17 35-51 4-20 (131)
202 COG1419 FlhF Flagellar GTP-bin 97.2 0.0082 1.8E-07 63.0 14.4 134 35-200 203-339 (407)
203 PRK12723 flagellar biosynthesi 97.1 0.0066 1.4E-07 64.5 13.7 130 36-196 175-309 (388)
204 KOG0298 DEAD box-containing he 97.1 0.0013 2.8E-08 76.5 8.4 154 35-193 374-558 (1394)
205 PRK13826 Dtr system oriT relax 97.1 0.0075 1.6E-07 71.5 14.8 138 4-184 366-505 (1102)
206 PRK04296 thymidine kinase; Pro 97.1 0.0013 2.7E-08 63.2 7.1 108 37-184 4-114 (190)
207 PRK14974 cell division protein 97.1 0.0073 1.6E-07 62.9 13.1 130 37-196 142-275 (336)
208 smart00491 HELICc2 helicase su 97.0 0.0032 7E-08 57.3 8.7 43 280-322 31-80 (142)
209 COG3421 Uncharacterized protei 97.0 0.0064 1.4E-07 65.8 11.5 141 40-187 2-167 (812)
210 PRK05703 flhF flagellar biosyn 97.0 0.012 2.7E-07 63.5 13.9 128 35-196 221-354 (424)
211 PF13871 Helicase_C_4: Helicas 96.9 0.0038 8.3E-08 62.7 8.9 79 283-361 51-141 (278)
212 PF00448 SRP54: SRP54-type pro 96.9 0.0079 1.7E-07 57.9 10.4 127 38-193 4-133 (196)
213 KOG0989 Replication factor C, 96.9 0.0031 6.8E-08 63.2 7.7 47 139-186 124-170 (346)
214 smart00382 AAA ATPases associa 96.9 0.003 6.6E-08 55.9 7.2 42 35-82 2-43 (148)
215 cd00009 AAA The AAA+ (ATPases 96.9 0.013 2.9E-07 52.3 11.4 17 35-51 19-35 (151)
216 PRK08116 hypothetical protein; 96.8 0.031 6.6E-07 56.6 14.1 124 21-190 89-226 (268)
217 PF14617 CMS1: U3-containing 9 96.7 0.0049 1.1E-07 61.2 8.0 87 67-155 124-212 (252)
218 PRK06921 hypothetical protein; 96.7 0.023 5E-07 57.5 12.9 44 35-84 117-160 (266)
219 COG1875 NYN ribonuclease and A 96.7 0.016 3.5E-07 59.6 10.9 64 15-81 223-288 (436)
220 PRK12377 putative replication 96.6 0.068 1.5E-06 53.4 15.2 59 22-87 80-146 (248)
221 PRK07952 DNA replication prote 96.6 0.037 8E-07 55.1 13.2 122 22-189 78-209 (244)
222 COG1484 DnaC DNA replication p 96.6 0.017 3.8E-07 57.9 10.8 73 11-90 74-153 (254)
223 KOG1131 RNA polymerase II tran 96.6 0.019 4.2E-07 61.2 11.3 75 16-92 12-90 (755)
224 KOG1805 DNA replication helica 96.6 0.0057 1.2E-07 69.6 7.9 127 17-158 666-810 (1100)
225 PRK11889 flhF flagellar biosyn 96.5 0.04 8.7E-07 58.1 13.3 128 36-196 242-374 (436)
226 PRK06835 DNA replication prote 96.5 0.11 2.3E-06 54.2 16.6 44 35-85 183-226 (329)
227 PHA02533 17 large terminase pr 96.5 0.024 5.2E-07 62.9 12.1 148 20-185 59-210 (534)
228 PF01695 IstB_IS21: IstB-like 96.5 0.004 8.7E-08 59.0 5.0 67 12-85 18-90 (178)
229 PRK10919 ATP-dependent DNA hel 96.4 0.0089 1.9E-07 68.6 8.6 70 20-93 2-71 (672)
230 PF05970 PIF1: PIF1-like helic 96.4 0.014 3.1E-07 61.8 9.6 60 20-85 1-66 (364)
231 cd01120 RecA-like_NTPases RecA 96.2 0.059 1.3E-06 49.3 11.6 38 38-81 2-39 (165)
232 PRK14712 conjugal transfer nic 96.2 0.03 6.6E-07 68.7 11.9 63 19-85 834-900 (1623)
233 PRK12727 flagellar biosynthesi 96.2 0.088 1.9E-06 57.7 14.2 127 35-195 350-480 (559)
234 PRK11054 helD DNA helicase IV; 96.1 0.023 5E-07 65.0 9.8 78 11-92 187-264 (684)
235 PRK08727 hypothetical protein; 96.1 0.039 8.5E-07 54.7 10.1 45 145-189 94-140 (233)
236 PRK13709 conjugal transfer nic 96.1 0.049 1.1E-06 67.7 12.8 65 19-85 966-1032(1747)
237 PRK05642 DNA replication initi 96.1 0.038 8.3E-07 54.8 9.9 43 145-187 98-141 (234)
238 TIGR03420 DnaA_homol_Hda DnaA 96.0 0.039 8.4E-07 54.1 9.9 18 35-52 38-55 (226)
239 KOG1133 Helicase of the DEAD s 96.0 0.22 4.7E-06 55.3 15.8 112 235-350 622-780 (821)
240 TIGR02760 TraI_TIGR conjugativ 96.0 0.065 1.4E-06 68.2 13.5 135 20-184 429-566 (1960)
241 PRK05707 DNA polymerase III su 95.9 0.046 9.9E-07 57.0 10.1 41 20-61 3-47 (328)
242 TIGR01075 uvrD DNA helicase II 95.9 0.033 7.2E-07 64.6 9.9 72 19-94 3-74 (715)
243 PF03354 Terminase_1: Phage Te 95.9 0.039 8.3E-07 60.9 9.8 151 23-183 1-161 (477)
244 COG3973 Superfamily I DNA and 95.8 0.045 9.7E-07 59.7 9.6 90 3-93 187-284 (747)
245 PF13177 DNA_pol3_delta2: DNA 95.8 0.074 1.6E-06 49.5 10.0 44 143-187 101-144 (162)
246 PRK09183 transposase/IS protei 95.8 0.21 4.6E-06 50.3 14.0 22 32-53 99-120 (259)
247 PRK06893 DNA replication initi 95.8 0.049 1.1E-06 53.8 9.2 45 144-188 91-137 (229)
248 PRK00149 dnaA chromosomal repl 95.8 0.063 1.4E-06 58.7 11.0 109 36-190 149-259 (450)
249 PRK14723 flhF flagellar biosyn 95.8 0.079 1.7E-06 60.6 11.9 129 37-196 187-317 (767)
250 TIGR02785 addA_Gpos recombinat 95.8 0.035 7.7E-07 68.0 9.8 125 20-155 1-126 (1232)
251 PRK12323 DNA polymerase III su 95.7 0.051 1.1E-06 60.8 9.8 43 142-185 122-164 (700)
252 COG1474 CDC6 Cdc6-related prot 95.7 0.12 2.6E-06 54.7 12.4 27 36-63 43-69 (366)
253 PRK08769 DNA polymerase III su 95.7 0.078 1.7E-06 55.0 10.6 146 18-186 2-154 (319)
254 TIGR00362 DnaA chromosomal rep 95.7 0.073 1.6E-06 57.4 10.9 37 36-76 137-173 (405)
255 TIGR01074 rep ATP-dependent DN 95.7 0.057 1.2E-06 62.2 10.5 89 21-134 2-90 (664)
256 PRK00771 signal recognition pa 95.6 0.12 2.6E-06 55.9 12.2 127 37-195 97-227 (437)
257 PRK11773 uvrD DNA-dependent he 95.6 0.051 1.1E-06 63.1 10.1 72 19-94 8-79 (721)
258 PRK07003 DNA polymerase III su 95.6 0.098 2.1E-06 59.5 11.7 40 143-183 118-157 (830)
259 PRK07764 DNA polymerase III su 95.6 0.12 2.7E-06 60.2 13.0 39 143-182 119-157 (824)
260 cd00561 CobA_CobO_BtuR ATP:cor 95.6 0.048 1E-06 50.4 7.8 54 142-195 93-148 (159)
261 PRK11331 5-methylcytosine-spec 95.6 0.049 1.1E-06 58.5 8.8 32 21-52 180-211 (459)
262 PRK14087 dnaA chromosomal repl 95.6 0.098 2.1E-06 57.1 11.4 110 36-189 142-253 (450)
263 COG1444 Predicted P-loop ATPas 95.6 0.094 2E-06 59.6 11.3 151 11-186 205-357 (758)
264 PRK12726 flagellar biosynthesi 95.6 0.19 4.2E-06 52.9 12.9 127 35-194 206-337 (407)
265 PRK09112 DNA polymerase III su 95.5 0.11 2.4E-06 54.8 11.2 42 142-184 139-180 (351)
266 PTZ00112 origin recognition co 95.5 0.068 1.5E-06 61.4 9.9 24 37-61 782-806 (1164)
267 TIGR02881 spore_V_K stage V sp 95.5 0.062 1.4E-06 54.2 9.0 17 36-52 43-59 (261)
268 cd01124 KaiC KaiC is a circadi 95.4 0.14 3E-06 48.5 10.7 48 38-92 2-49 (187)
269 PRK08084 DNA replication initi 95.4 0.12 2.6E-06 51.2 10.5 16 36-51 46-61 (235)
270 PRK09111 DNA polymerase III su 95.4 0.12 2.7E-06 58.2 11.6 40 142-182 130-169 (598)
271 PF00004 AAA: ATPase family as 95.4 0.017 3.7E-07 51.1 3.9 14 38-51 1-14 (132)
272 TIGR01425 SRP54_euk signal rec 95.4 0.32 6.9E-06 52.4 14.1 130 38-196 103-235 (429)
273 PHA03333 putative ATPase subun 95.4 0.39 8.4E-06 54.0 15.0 76 14-94 163-241 (752)
274 PRK14958 DNA polymerase III su 95.4 0.16 3.5E-06 56.2 12.3 39 143-182 118-156 (509)
275 TIGR02782 TrbB_P P-type conjug 95.3 0.24 5.3E-06 50.9 12.7 67 10-82 108-175 (299)
276 PLN03025 replication factor C 95.3 0.21 4.6E-06 51.9 12.5 39 143-182 98-136 (319)
277 PRK12402 replication factor C 95.3 0.11 2.3E-06 54.3 10.4 40 143-183 124-163 (337)
278 PRK06731 flhF flagellar biosyn 95.3 0.31 6.6E-06 49.3 13.0 128 36-196 76-208 (270)
279 PRK14086 dnaA chromosomal repl 95.3 0.38 8.2E-06 53.9 14.8 47 144-190 377-425 (617)
280 PRK14956 DNA polymerase III su 95.3 0.11 2.4E-06 56.4 10.3 16 37-52 42-57 (484)
281 TIGR00708 cobA cob(I)alamin ad 95.2 0.081 1.8E-06 49.5 8.0 54 142-195 95-150 (173)
282 PF13173 AAA_14: AAA domain 95.2 0.17 3.6E-06 45.0 9.8 35 145-182 62-96 (128)
283 PRK14964 DNA polymerase III su 95.2 0.32 6.9E-06 53.4 13.7 40 142-182 114-153 (491)
284 PRK12724 flagellar biosynthesi 95.2 0.29 6.2E-06 52.3 12.9 124 38-196 226-356 (432)
285 PRK08691 DNA polymerase III su 95.2 0.18 4E-06 57.0 12.0 40 142-182 117-156 (709)
286 PRK05986 cob(I)alamin adenolsy 95.1 0.24 5.3E-06 47.1 11.0 147 34-196 21-169 (191)
287 COG2256 MGS1 ATPase related to 95.1 0.1 2.2E-06 54.6 9.0 18 36-53 49-66 (436)
288 PRK07471 DNA polymerase III su 95.1 0.13 2.9E-06 54.3 10.3 148 24-186 23-182 (365)
289 TIGR01073 pcrA ATP-dependent D 95.1 0.098 2.1E-06 60.9 10.1 72 19-94 3-74 (726)
290 PHA02544 44 clamp loader, smal 95.1 0.11 2.5E-06 53.8 9.7 40 144-183 100-139 (316)
291 cd01122 GP4d_helicase GP4d_hel 95.1 0.061 1.3E-06 54.5 7.5 145 7-159 2-155 (271)
292 PRK13833 conjugal transfer pro 95.1 0.075 1.6E-06 55.1 8.1 65 12-82 122-187 (323)
293 PRK08903 DnaA regulatory inact 95.1 0.14 3E-06 50.4 9.7 41 145-186 91-132 (227)
294 TIGR02640 gas_vesic_GvpN gas v 95.1 0.16 3.4E-06 51.3 10.2 32 21-52 3-38 (262)
295 PRK14088 dnaA chromosomal repl 95.0 0.27 5.9E-06 53.5 12.7 38 36-77 131-168 (440)
296 PRK14957 DNA polymerase III su 95.0 0.19 4.2E-06 55.8 11.5 40 142-182 117-156 (546)
297 PF00308 Bac_DnaA: Bacterial d 95.0 0.11 2.3E-06 51.1 8.6 107 37-189 36-144 (219)
298 PRK14721 flhF flagellar biosyn 95.0 0.2 4.4E-06 53.7 11.2 131 35-196 191-323 (420)
299 PRK14960 DNA polymerase III su 95.0 0.23 5.1E-06 55.8 11.9 39 143-182 117-155 (702)
300 TIGR03499 FlhF flagellar biosy 94.9 0.11 2.5E-06 53.0 8.9 17 36-52 195-211 (282)
301 TIGR01547 phage_term_2 phage t 94.9 0.088 1.9E-06 56.5 8.5 144 37-196 3-151 (396)
302 PRK13894 conjugal transfer ATP 94.9 0.076 1.7E-06 55.1 7.6 66 10-81 124-190 (319)
303 PRK00411 cdc6 cell division co 94.9 0.13 2.8E-06 55.1 9.7 25 36-61 56-80 (394)
304 PRK14961 DNA polymerase III su 94.9 0.24 5.2E-06 52.6 11.5 40 142-182 117-156 (363)
305 TIGR02760 TraI_TIGR conjugativ 94.9 0.16 3.4E-06 64.9 11.6 62 19-85 1018-1084(1960)
306 PRK12422 chromosomal replicati 94.9 0.21 4.6E-06 54.3 11.2 48 144-191 202-251 (445)
307 PRK10917 ATP-dependent DNA hel 94.8 0.16 3.4E-06 58.6 10.7 77 242-318 309-390 (681)
308 PF05496 RuvB_N: Holliday junc 94.8 0.12 2.5E-06 50.4 8.0 16 37-52 52-67 (233)
309 PF05127 Helicase_RecD: Helica 94.8 0.0082 1.8E-07 56.4 0.1 125 39-187 1-125 (177)
310 CHL00181 cbbX CbbX; Provisiona 94.8 0.17 3.7E-06 51.8 9.6 18 35-52 59-76 (287)
311 COG4962 CpaF Flp pilus assembl 94.7 0.051 1.1E-06 55.8 5.6 63 14-83 151-214 (355)
312 COG0552 FtsY Signal recognitio 94.7 0.69 1.5E-05 47.6 13.6 129 38-196 142-280 (340)
313 PRK14952 DNA polymerase III su 94.7 0.39 8.4E-06 54.0 12.9 40 142-182 116-155 (584)
314 PHA00729 NTP-binding motif con 94.7 0.28 6.1E-06 48.0 10.4 74 121-195 60-138 (226)
315 PRK08939 primosomal protein Dn 94.7 0.33 7.2E-06 50.1 11.6 26 35-61 156-181 (306)
316 PRK14951 DNA polymerase III su 94.7 0.19 4.2E-06 56.6 10.5 40 142-182 122-161 (618)
317 PTZ00293 thymidine kinase; Pro 94.6 0.17 3.6E-06 49.1 8.6 39 35-79 4-42 (211)
318 PF05729 NACHT: NACHT domain 94.6 0.17 3.7E-06 46.4 8.6 46 37-83 2-47 (166)
319 PF05876 Terminase_GpA: Phage 94.5 0.096 2.1E-06 58.7 7.8 126 20-158 16-148 (557)
320 TIGR03015 pepcterm_ATPase puta 94.4 0.77 1.7E-05 46.2 13.6 34 19-52 22-60 (269)
321 PRK07994 DNA polymerase III su 94.4 0.23 5E-06 56.2 10.5 38 143-181 118-155 (647)
322 PRK14949 DNA polymerase III su 94.4 0.73 1.6E-05 53.7 14.4 38 143-181 118-155 (944)
323 PRK14963 DNA polymerase III su 94.4 0.26 5.6E-06 54.5 10.6 24 37-61 38-61 (504)
324 COG0470 HolB ATPase involved i 94.3 0.22 4.8E-06 51.6 9.6 40 142-182 107-146 (325)
325 PRK14955 DNA polymerase III su 94.3 0.48 1.1E-05 50.9 12.3 17 37-53 40-56 (397)
326 KOG0739 AAA+-type ATPase [Post 94.3 0.84 1.8E-05 46.0 12.7 127 29-205 155-298 (439)
327 PRK06995 flhF flagellar biosyn 94.3 0.62 1.4E-05 50.9 13.1 17 36-52 257-273 (484)
328 PRK05563 DNA polymerase III su 94.3 0.39 8.5E-06 53.9 11.9 19 142-160 117-135 (559)
329 KOG2036 Predicted P-loop ATPas 94.2 0.47 1E-05 52.7 11.6 148 22-188 255-414 (1011)
330 PF02572 CobA_CobO_BtuR: ATP:c 94.2 0.36 7.8E-06 45.2 9.5 142 38-195 6-149 (172)
331 COG1110 Reverse gyrase [DNA re 94.2 0.18 3.9E-06 58.3 8.8 72 232-303 114-191 (1187)
332 PRK04195 replication factor C 94.1 0.34 7.4E-06 53.5 11.0 18 35-52 39-56 (482)
333 PRK14969 DNA polymerase III su 94.1 0.42 9.1E-06 53.3 11.5 40 142-182 117-156 (527)
334 PRK10867 signal recognition pa 94.1 1.1 2.3E-05 48.6 14.2 130 38-196 103-236 (433)
335 PRK06871 DNA polymerase III su 94.1 0.3 6.4E-06 50.8 9.6 43 142-185 105-147 (325)
336 KOG0745 Putative ATP-dependent 94.0 0.058 1.2E-06 56.7 4.2 26 35-62 226-251 (564)
337 TIGR00643 recG ATP-dependent D 94.0 0.24 5.3E-06 56.6 9.8 76 242-317 283-363 (630)
338 PRK06645 DNA polymerase III su 94.0 0.69 1.5E-05 51.1 12.8 18 36-53 44-61 (507)
339 TIGR00064 ftsY signal recognit 93.9 1.5 3.3E-05 44.4 14.4 128 37-194 74-211 (272)
340 TIGR00959 ffh signal recogniti 93.9 1.1 2.4E-05 48.4 14.0 52 145-196 183-235 (428)
341 TIGR02880 cbbX_cfxQ probable R 93.9 0.26 5.6E-06 50.4 8.8 18 35-52 58-75 (284)
342 PRK05580 primosome assembly pr 93.8 0.22 4.9E-06 57.2 9.1 76 243-319 190-266 (679)
343 PRK14962 DNA polymerase III su 93.8 0.29 6.3E-06 53.7 9.5 16 37-52 38-53 (472)
344 PRK06090 DNA polymerase III su 93.8 0.49 1.1E-05 49.1 10.7 140 20-186 3-149 (319)
345 PRK14965 DNA polymerase III su 93.8 0.42 9.1E-06 53.9 11.0 40 142-182 117-156 (576)
346 PRK10436 hypothetical protein; 93.7 0.2 4.3E-06 54.7 8.0 45 12-60 196-242 (462)
347 PRK13342 recombination factor 93.7 0.4 8.7E-06 51.8 10.2 17 36-52 37-53 (413)
348 PHA02244 ATPase-like protein 93.7 0.33 7.1E-06 51.0 9.0 22 30-51 114-135 (383)
349 TIGR02928 orc1/cdc6 family rep 93.7 0.44 9.4E-06 50.5 10.4 24 36-60 41-64 (365)
350 TIGR00595 priA primosomal prot 93.7 0.32 6.9E-06 53.9 9.6 76 243-319 25-101 (505)
351 cd01129 PulE-GspE PulE/GspE Th 93.6 0.2 4.2E-06 50.7 7.2 62 11-81 57-120 (264)
352 PRK14959 DNA polymerase III su 93.5 0.32 7E-06 54.6 9.3 18 36-53 39-56 (624)
353 PRK08699 DNA polymerase III su 93.5 0.8 1.7E-05 47.7 11.6 40 21-61 2-46 (325)
354 KOG0991 Replication factor C, 93.5 0.18 3.9E-06 48.9 6.1 42 142-184 111-152 (333)
355 PRK13341 recombination factor 93.4 0.45 9.8E-06 54.9 10.6 40 145-189 110-149 (725)
356 TIGR00678 holB DNA polymerase 93.4 0.6 1.3E-05 44.4 10.0 40 142-182 94-133 (188)
357 PRK05973 replicative DNA helic 93.4 0.39 8.4E-06 47.6 8.7 82 3-92 23-114 (237)
358 PRK11034 clpA ATP-dependent Cl 93.3 1 2.3E-05 52.2 13.4 44 146-189 280-327 (758)
359 TIGR02533 type_II_gspE general 93.3 0.24 5.2E-06 54.6 7.8 45 12-60 220-266 (486)
360 PRK14950 DNA polymerase III su 93.3 0.46 1E-05 53.7 10.3 38 142-180 118-155 (585)
361 PF07728 AAA_5: AAA domain (dy 93.3 0.031 6.7E-07 50.3 0.8 15 37-51 1-15 (139)
362 PF05621 TniB: Bacterial TniB 93.3 0.68 1.5E-05 47.2 10.4 114 36-177 62-180 (302)
363 COG2804 PulE Type II secretory 93.3 0.16 3.5E-06 54.8 6.2 41 22-63 243-285 (500)
364 PRK06964 DNA polymerase III su 93.3 0.34 7.4E-06 50.7 8.5 41 21-62 2-47 (342)
365 COG2909 MalT ATP-dependent tra 93.2 0.34 7.4E-06 55.3 8.8 41 146-186 131-171 (894)
366 PRK07940 DNA polymerase III su 93.2 0.99 2.1E-05 48.3 12.0 42 142-184 115-156 (394)
367 TIGR03877 thermo_KaiC_1 KaiC d 93.2 0.43 9.4E-06 47.3 8.8 52 35-93 21-72 (237)
368 cd03115 SRP The signal recogni 93.1 2.1 4.5E-05 39.9 13.0 15 38-52 3-17 (173)
369 PRK08451 DNA polymerase III su 93.1 0.79 1.7E-05 50.8 11.4 40 142-182 115-154 (535)
370 TIGR00580 mfd transcription-re 93.0 0.47 1E-05 56.2 10.2 76 242-317 499-579 (926)
371 PRK05896 DNA polymerase III su 93.0 0.53 1.1E-05 52.7 9.9 39 143-182 118-156 (605)
372 TIGR02639 ClpA ATP-dependent C 93.0 1.2 2.6E-05 51.8 13.5 17 36-52 204-220 (731)
373 PRK14954 DNA polymerase III su 93.0 0.84 1.8E-05 51.7 11.7 40 142-182 125-164 (620)
374 PRK08533 flagellar accessory p 93.0 0.94 2E-05 44.7 10.8 51 34-91 23-73 (230)
375 PRK00440 rfc replication facto 93.0 1.6 3.4E-05 45.1 13.1 39 144-183 102-140 (319)
376 TIGR02538 type_IV_pilB type IV 92.9 0.29 6.3E-06 55.1 8.0 45 12-60 294-340 (564)
377 PRK07993 DNA polymerase III su 92.9 0.53 1.2E-05 49.2 9.4 140 20-185 2-148 (334)
378 PHA03368 DNA packaging termina 92.9 0.54 1.2E-05 52.7 9.6 135 35-187 254-392 (738)
379 PF06745 KaiC: KaiC; InterPro 92.9 0.22 4.7E-06 49.0 6.2 131 35-185 19-160 (226)
380 KOG2028 ATPase related to the 92.9 0.35 7.6E-06 49.9 7.5 49 36-90 163-211 (554)
381 COG1435 Tdk Thymidine kinase [ 92.9 0.83 1.8E-05 43.4 9.5 92 36-158 5-96 (201)
382 TIGR02688 conserved hypothetic 92.8 0.44 9.5E-06 50.9 8.5 47 6-53 173-227 (449)
383 COG2109 BtuR ATP:corrinoid ade 92.8 0.6 1.3E-05 44.0 8.4 54 143-196 121-176 (198)
384 PF01443 Viral_helicase1: Vira 92.7 0.13 2.9E-06 50.5 4.4 19 38-57 1-19 (234)
385 KOG0701 dsRNA-specific nucleas 92.6 0.075 1.6E-06 64.8 2.8 93 245-337 294-398 (1606)
386 TIGR01650 PD_CobS cobaltochela 92.5 0.43 9.3E-06 49.4 7.8 24 28-51 57-80 (327)
387 PRK14873 primosome assembly pr 92.4 0.74 1.6E-05 52.6 10.3 90 229-319 172-265 (665)
388 KOG0744 AAA+-type ATPase [Post 92.4 0.51 1.1E-05 48.1 7.9 124 35-170 177-337 (423)
389 COG1200 RecG RecG-like helicas 92.4 0.56 1.2E-05 52.4 9.0 78 240-317 308-390 (677)
390 COG0593 DnaA ATPase involved i 92.4 0.71 1.5E-05 49.2 9.4 47 144-190 175-223 (408)
391 PRK04841 transcriptional regul 92.4 1.1 2.3E-05 53.6 12.3 41 146-186 123-163 (903)
392 PRK10416 signal recognition pa 92.3 2.6 5.7E-05 43.7 13.5 51 143-193 195-252 (318)
393 PRK14948 DNA polymerase III su 92.3 0.65 1.4E-05 52.7 9.7 17 36-52 39-55 (620)
394 cd01130 VirB11-like_ATPase Typ 92.3 0.38 8.3E-06 45.8 6.8 37 13-51 4-41 (186)
395 TIGR03881 KaiC_arch_4 KaiC dom 92.3 0.92 2E-05 44.5 9.8 50 35-91 20-69 (229)
396 PRK06904 replicative DNA helic 92.2 0.98 2.1E-05 49.6 10.6 116 35-160 221-350 (472)
397 KOG1133 Helicase of the DEAD s 92.2 0.18 3.8E-06 56.0 4.7 47 15-61 9-60 (821)
398 COG2255 RuvB Holliday junction 92.0 0.36 7.8E-06 48.4 6.3 17 36-52 53-69 (332)
399 PRK14953 DNA polymerase III su 92.0 1.7 3.7E-05 48.0 12.3 34 142-176 117-150 (486)
400 COG4626 Phage terminase-like p 92.0 1.1 2.5E-05 49.0 10.6 148 20-184 61-224 (546)
401 PHA00350 putative assembly pro 92.0 0.8 1.7E-05 48.8 9.3 47 146-193 83-152 (399)
402 PRK13851 type IV secretion sys 91.8 0.25 5.5E-06 51.7 5.4 42 34-82 161-202 (344)
403 PF08423 Rad51: Rad51; InterP 91.8 0.28 6.1E-06 49.3 5.5 55 27-81 25-84 (256)
404 TIGR00635 ruvB Holliday juncti 91.8 0.63 1.4E-05 47.9 8.3 17 36-52 31-47 (305)
405 PRK11823 DNA repair protein Ra 91.8 0.77 1.7E-05 50.1 9.2 58 28-92 68-130 (446)
406 cd01121 Sms Sms (bacterial rad 91.7 1.3 2.8E-05 47.0 10.6 50 36-92 83-132 (372)
407 PF02456 Adeno_IVa2: Adenoviru 91.7 0.28 6.1E-06 49.6 5.2 40 38-82 90-130 (369)
408 COG2805 PilT Tfp pilus assembl 91.7 0.47 1E-05 47.9 6.7 27 37-64 127-153 (353)
409 PF06733 DEAD_2: DEAD_2; Inte 91.7 0.12 2.6E-06 48.7 2.5 45 114-159 114-160 (174)
410 PRK13900 type IV secretion sys 91.6 0.55 1.2E-05 49.1 7.5 42 34-82 159-200 (332)
411 PRK06647 DNA polymerase III su 91.5 1.2 2.5E-05 50.1 10.4 16 37-52 40-55 (563)
412 PRK07133 DNA polymerase III su 91.4 0.54 1.2E-05 53.8 7.8 40 142-182 116-155 (725)
413 PRK00080 ruvB Holliday junctio 91.3 1 2.2E-05 47.1 9.2 17 36-52 52-68 (328)
414 PHA00012 I assembly protein 91.3 2.7 5.8E-05 43.3 11.7 53 141-194 78-136 (361)
415 COG3854 SpoIIIAA ncharacterize 91.2 1.4 3.1E-05 42.9 9.1 114 29-179 129-247 (308)
416 PF02534 T4SS-DNA_transf: Type 91.2 0.2 4.3E-06 55.1 4.0 58 36-105 45-102 (469)
417 PRK13531 regulatory ATPase Rav 91.2 0.87 1.9E-05 49.6 8.7 24 29-52 33-56 (498)
418 KOG0298 DEAD box-containing he 91.2 0.59 1.3E-05 55.3 7.8 107 240-351 1218-1327(1394)
419 PF03237 Terminase_6: Terminas 91.1 3.4 7.3E-05 43.2 13.3 146 39-200 1-154 (384)
420 PF00437 T2SE: Type II/IV secr 91.1 0.37 8.1E-06 48.7 5.6 42 34-81 126-167 (270)
421 PRK07399 DNA polymerase III su 91.1 2.5 5.3E-05 43.9 11.7 60 122-185 104-163 (314)
422 PF05707 Zot: Zonular occluden 91.1 0.17 3.8E-06 48.5 3.0 50 144-194 79-134 (193)
423 cd01126 TraG_VirD4 The TraG/Tr 91.1 0.14 3.1E-06 54.8 2.6 56 37-104 1-56 (384)
424 KOG0738 AAA+-type ATPase [Post 91.1 0.9 2E-05 47.5 8.2 22 30-51 235-261 (491)
425 PRK03992 proteasome-activating 91.0 1.8 3.9E-05 46.4 11.0 16 36-51 166-181 (389)
426 COG0541 Ffh Signal recognition 90.8 4.5 9.9E-05 43.1 13.3 131 38-196 103-235 (451)
427 TIGR02397 dnaX_nterm DNA polym 90.8 1.9 4.1E-05 45.3 10.9 23 37-60 38-60 (355)
428 TIGR00763 lon ATP-dependent pr 90.8 1.1 2.3E-05 52.7 9.7 17 35-51 347-363 (775)
429 TIGR03346 chaperone_ClpB ATP-d 90.8 2 4.3E-05 51.0 12.0 24 36-60 195-218 (852)
430 PRK10689 transcription-repair 90.8 1.2 2.6E-05 54.2 10.2 76 242-317 648-728 (1147)
431 KOG1513 Nuclear helicase MOP-3 90.7 0.11 2.4E-06 58.1 1.4 159 17-185 261-454 (1300)
432 PRK06305 DNA polymerase III su 90.7 1.1 2.3E-05 49.1 9.0 40 142-182 119-158 (451)
433 TIGR00767 rho transcription te 90.7 1.4 3.1E-05 46.8 9.5 18 34-51 167-184 (415)
434 COG4555 NatA ABC-type Na+ tran 90.6 0.86 1.9E-05 43.5 7.0 52 142-193 149-200 (245)
435 PRK13897 type IV secretion sys 90.5 0.25 5.4E-06 55.6 4.0 58 36-105 159-216 (606)
436 cd00984 DnaB_C DnaB helicase C 90.5 2.4 5.2E-05 41.9 10.7 39 34-77 12-50 (242)
437 PRK14971 DNA polymerase III su 90.5 0.75 1.6E-05 52.2 7.8 41 141-182 118-158 (614)
438 PRK07414 cob(I)yrinic acid a,c 90.5 0.69 1.5E-05 43.5 6.2 53 142-194 113-167 (178)
439 COG0630 VirB11 Type IV secreto 90.5 0.53 1.2E-05 48.7 6.1 58 18-82 125-183 (312)
440 PRK06067 flagellar accessory p 90.4 1.8 3.9E-05 42.7 9.7 51 35-92 25-75 (234)
441 PF03796 DnaB_C: DnaB-like hel 90.4 1 2.2E-05 45.2 8.1 116 35-159 19-145 (259)
442 KOG0742 AAA+-type ATPase [Post 90.4 0.45 9.8E-06 49.8 5.3 102 36-187 385-495 (630)
443 COG1219 ClpX ATP-dependent pro 90.3 0.26 5.6E-06 50.0 3.4 25 36-62 98-122 (408)
444 TIGR02858 spore_III_AA stage I 90.2 3.9 8.5E-05 41.4 12.0 34 27-62 100-136 (270)
445 TIGR03878 thermo_KaiC_2 KaiC d 90.2 2.1 4.5E-05 43.1 10.0 37 35-77 36-72 (259)
446 COG3972 Superfamily I DNA and 90.2 0.61 1.3E-05 50.0 6.2 138 21-165 163-315 (660)
447 TIGR02524 dot_icm_DotB Dot/Icm 90.1 0.83 1.8E-05 48.3 7.3 43 12-61 116-159 (358)
448 TIGR03345 VI_ClpV1 type VI sec 90.1 1.5 3.2E-05 51.9 10.0 24 38-63 599-622 (852)
449 KOG1513 Nuclear helicase MOP-3 90.0 0.42 9.1E-06 53.8 5.0 56 284-339 848-911 (1300)
450 CHL00095 clpC Clp protease ATP 89.9 2.8 6E-05 49.6 12.2 17 36-52 201-217 (821)
451 KOG0331 ATP-dependent RNA heli 89.9 3.1 6.8E-05 45.6 11.5 90 243-336 165-272 (519)
452 TIGR03689 pup_AAA proteasome A 89.8 1.3 2.7E-05 49.0 8.6 17 35-51 216-232 (512)
453 PRK09376 rho transcription ter 89.6 1.4 3E-05 46.7 8.3 27 34-61 168-194 (416)
454 TIGR02525 plasmid_TraJ plasmid 89.6 0.87 1.9E-05 48.3 6.9 44 34-81 148-191 (372)
455 COG1198 PriA Primosomal protei 89.3 0.95 2.1E-05 51.9 7.4 90 226-316 226-318 (730)
456 TIGR03345 VI_ClpV1 type VI sec 89.2 4 8.7E-05 48.3 12.8 32 21-52 188-225 (852)
457 TIGR03819 heli_sec_ATPase heli 89.2 0.94 2E-05 47.5 6.8 63 10-81 154-217 (340)
458 PRK08058 DNA polymerase III su 89.1 3.5 7.6E-05 43.1 11.1 41 142-183 108-148 (329)
459 COG0513 SrmB Superfamily II DN 89.0 1.3 2.9E-05 49.2 8.2 68 246-317 102-180 (513)
460 COG0210 UvrD Superfamily I DNA 89.0 1.4 3E-05 50.7 8.7 71 20-94 2-72 (655)
461 PRK14701 reverse gyrase; Provi 88.9 1.3 2.9E-05 55.5 8.8 61 242-302 121-187 (1638)
462 TIGR00416 sms DNA repair prote 88.9 2.5 5.3E-05 46.3 10.0 50 36-92 95-144 (454)
463 cd03239 ABC_SMC_head The struc 88.9 0.47 1E-05 44.9 3.9 42 143-184 115-157 (178)
464 PRK13764 ATPase; Provisional 88.7 0.71 1.5E-05 51.9 5.8 26 35-61 257-282 (602)
465 TIGR00614 recQ_fam ATP-depende 88.6 5.6 0.00012 43.8 12.8 121 243-363 51-185 (470)
466 KOG0741 AAA+-type ATPase [Post 88.5 3.7 8E-05 44.8 10.5 51 2-52 493-555 (744)
467 PRK13850 type IV secretion sys 88.5 0.43 9.4E-06 54.4 4.0 57 36-104 140-196 (670)
468 PRK05564 DNA polymerase III su 88.5 2.9 6.3E-05 43.3 9.9 40 142-182 91-130 (313)
469 PRK05748 replicative DNA helic 88.4 2.3 4.9E-05 46.6 9.5 112 35-157 203-327 (448)
470 PRK08840 replicative DNA helic 88.4 3 6.5E-05 45.7 10.3 113 35-157 217-342 (464)
471 TIGR01420 pilT_fam pilus retra 88.4 1 2.2E-05 47.5 6.4 42 35-81 122-163 (343)
472 TIGR01389 recQ ATP-dependent D 88.4 5.1 0.00011 45.5 12.6 121 243-363 53-185 (591)
473 COG1618 Predicted nucleotide k 88.4 0.14 3E-06 46.9 -0.0 117 37-171 7-129 (179)
474 TIGR02868 CydC thiol reductant 88.3 2 4.3E-05 48.1 9.2 25 35-61 361-385 (529)
475 TIGR01243 CDC48 AAA family ATP 88.3 3.2 6.9E-05 48.4 11.1 17 35-51 212-228 (733)
476 PRK10865 protein disaggregatio 88.2 4.5 9.8E-05 48.0 12.3 24 36-60 200-223 (857)
477 KOG2004 Mitochondrial ATP-depe 88.1 1.9 4.1E-05 48.6 8.3 113 2-157 376-518 (906)
478 PRK06321 replicative DNA helic 88.1 3.4 7.3E-05 45.4 10.5 124 21-158 210-350 (472)
479 cd01393 recA_like RecA is a b 88.1 1.6 3.5E-05 42.6 7.4 51 28-79 7-63 (226)
480 COG1132 MdlB ABC-type multidru 88.0 2.6 5.6E-05 47.6 9.9 27 34-62 354-380 (567)
481 PRK04537 ATP-dependent RNA hel 87.9 3.5 7.7E-05 46.5 10.8 74 69-153 257-334 (572)
482 cd01128 rho_factor Transcripti 87.9 2.4 5.1E-05 42.4 8.4 19 33-51 14-32 (249)
483 COG0542 clpA ATP-binding subun 87.9 3.6 7.7E-05 47.5 10.7 84 36-156 522-605 (786)
484 PF12846 AAA_10: AAA-like doma 87.9 1.7 3.7E-05 44.1 7.7 43 35-83 1-43 (304)
485 TIGR00665 DnaB replicative DNA 87.9 2.4 5.3E-05 46.1 9.3 111 35-157 195-318 (434)
486 CHL00176 ftsH cell division pr 87.8 8.5 0.00018 44.0 13.7 17 36-52 217-233 (638)
487 PF03969 AFG1_ATPase: AFG1-lik 87.7 7 0.00015 41.4 12.3 110 35-189 62-172 (362)
488 PRK09087 hypothetical protein; 87.7 1.9 4E-05 42.5 7.5 40 147-188 90-130 (226)
489 KOG0344 ATP-dependent RNA heli 87.6 9.5 0.00021 42.0 13.1 97 44-154 366-466 (593)
490 KOG0733 Nuclear AAA ATPase (VC 87.5 1.7 3.8E-05 48.0 7.5 80 144-239 604-693 (802)
491 PRK08506 replicative DNA helic 87.4 2.7 5.8E-05 46.3 9.3 112 35-158 192-316 (472)
492 TIGR02237 recomb_radB DNA repa 87.4 4.2 9.1E-05 39.2 9.8 38 35-78 12-49 (209)
493 TIGR01241 FtsH_fam ATP-depende 87.4 7 0.00015 43.3 12.6 16 36-51 89-104 (495)
494 TIGR03600 phage_DnaB phage rep 87.3 3 6.4E-05 45.2 9.5 113 35-158 194-319 (421)
495 KOG0780 Signal recognition par 87.2 3.4 7.4E-05 43.3 9.0 153 17-196 68-236 (483)
496 PRK12608 transcription termina 87.2 2.7 5.9E-05 44.3 8.6 39 23-62 118-159 (380)
497 cd00268 DEADc DEAD-box helicas 87.2 13 0.00028 35.4 13.0 72 242-317 68-149 (203)
498 PF10593 Z1: Z1 domain; Inter 87.1 3.7 7.9E-05 40.8 9.2 86 267-358 110-201 (239)
499 PF13555 AAA_29: P-loop contai 87.1 0.9 1.9E-05 34.8 3.7 26 35-62 23-48 (62)
500 cd01131 PilT Pilus retraction 87.0 0.9 1.9E-05 43.7 4.7 39 38-81 4-42 (198)
No 1
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-100 Score=776.31 Aligned_cols=441 Identities=63% Similarity=0.975 Sum_probs=434.3
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+|+||+|||++|..+||..|||||..+||.+|.|+|++.||.||||||++|++|+|++|++++.....++||||||||+|
T Consensus 185 ~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTREL 264 (691)
T KOG0338|consen 185 SMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTREL 264 (691)
T ss_pred hcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCc
Q 007481 82 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF 161 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf 161 (602)
+.|++++.++++.|+++.+|+++||++...|+..|+..|||||+|||+|+|||+|+.+|+++++.++|+||||+|++.||
T Consensus 265 aiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegF 344 (691)
T KOG0338|consen 265 AIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGF 344 (691)
T ss_pred HHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhhc
Q 007481 162 SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241 (602)
Q Consensus 162 ~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~ 241 (602)
.+++.+|+..||+++|++||||||+..+.+++.+.+++|+++++++....++.++|+|+++++..+..+..++..++...
T Consensus 345 ademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rt 424 (691)
T KOG0338|consen 345 ADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRT 424 (691)
T ss_pred HHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCC
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACP 321 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p 321 (602)
+..++|||+.|++.|++|..+|+.+|+++..|||+++|.+|.+.++.|++++++||||||+++|||||++|.+||||++|
T Consensus 425 f~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP 504 (691)
T KOG0338|consen 425 FQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMP 504 (691)
T ss_pred cccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHH---hcCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007481 322 RDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR---AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEER 398 (602)
Q Consensus 322 ~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~ 398 (602)
.+...|+||+|||+|+|+.|.+++|+.++|+++++.|.+. .+.++.+++++...+..|...|++|++.+..++.+++
T Consensus 505 ~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~~~a~~klk~R~i~~~~Iek~~~~ieemE~~iq~vl~eE~ 584 (691)
T KOG0338|consen 505 KTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSSTKAGSKLKNRNIPPEVIEKFRKKIEEMEDTIQAVLDEER 584 (691)
T ss_pred hhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhhhhcccchhhcCCCHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhcCccccccccHHHHHHHH
Q 007481 399 EERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAV 442 (602)
Q Consensus 399 ~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 442 (602)
+++.+..++++..+++||++|.+++.++|.|+||++++++++.+
T Consensus 585 ~ekel~~ae~ql~k~en~Le~g~ei~arprRtWFqte~~kk~~K 628 (691)
T KOG0338|consen 585 EEKELSKAEAQLEKGENMLEHGDEIYARPRRTWFQTEKDKKASK 628 (691)
T ss_pred HHHHHHHHHhHHHHHHHHHhhccccccCccchhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999988887665
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.8e-75 Score=573.39 Aligned_cols=372 Identities=41% Similarity=0.664 Sum_probs=355.4
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+||+.++|+++|+.+||..||++|+++||.++.|+|||+.|.||||||.+|+||++++++..+. .+.+|||+|||||
T Consensus 65 dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~---~~~~lVLtPtREL 141 (476)
T KOG0330|consen 65 DLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK---LFFALVLTPTREL 141 (476)
T ss_pred hcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC---CceEEEecCcHHH
Confidence 7999999999999999999999999999999999999999999999999999999999998764 4789999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCc
Q 007481 82 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF 161 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf 161 (602)
|.|+.+.+..+...+++.+++++||.+...|...+...|+|+|+|||+|++|+.+...+++..++++|+||||+++++.|
T Consensus 142 A~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF 221 (476)
T KOG0330|consen 142 AQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDF 221 (476)
T ss_pred HHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhhc
Q 007481 162 SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241 (602)
Q Consensus 162 ~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~ 241 (602)
...+..|+..+|..+|+++|||||+..+..+....+.+|+.+.+...+...+.+.|.|+.++. ..+..+|..++...
T Consensus 222 ~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~---k~K~~yLV~ll~e~ 298 (476)
T KOG0330|consen 222 EEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPG---KDKDTYLVYLLNEL 298 (476)
T ss_pred HHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccc---cccchhHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999998864 56778888888888
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCC
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACP 321 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p 321 (602)
.+..+||||+|...+..++.+|...|+.+..|||.|++..|.-+++.|++|..+||||||+++||||+|.|++|||||+|
T Consensus 299 ~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP 378 (476)
T KOG0330|consen 299 AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIP 378 (476)
T ss_pred cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcchhhhhhhhhhHHH
Q 007481 322 RDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKW 379 (602)
Q Consensus 322 ~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~~~~~~~~ 379 (602)
.+..+||||+||+||+|++|.+|+|++..|.+.+..|+..++.++....++.+.+..+
T Consensus 379 ~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~~~~~~l 436 (476)
T KOG0330|consen 379 THSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDKNEVMSL 436 (476)
T ss_pred CcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcchHHHHHH
Confidence 9999999999999999999999999999999999999999998887777766555433
No 3
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-67 Score=575.84 Aligned_cols=361 Identities=43% Similarity=0.675 Sum_probs=333.9
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+|+|++.++++|.++||..|||||.++||.++.|+|+++.|+||||||++|++|+++.+...... ....+|||+|||||
T Consensus 33 ~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~-~~~~aLil~PTREL 111 (513)
T COG0513 33 SLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVER-KYVSALILAPTREL 111 (513)
T ss_pred hcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccccc-CCCceEEECCCHHH
Confidence 68999999999999999999999999999999999999999999999999999999997642111 11119999999999
Q ss_pred HHHHHHHHHHHhhcC-CceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC
Q 007481 82 AVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 160 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~-~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g 160 (602)
|.|+++.+..++.+. ++.++.++||.+...+...+..+++|||+||+||+||+.+. .++++.+.++|+||||+|+++|
T Consensus 112 A~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~-~l~l~~v~~lVlDEADrmLd~G 190 (513)
T COG0513 112 AVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG-KLDLSGVETLVLDEADRMLDMG 190 (513)
T ss_pred HHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC-CcchhhcCEEEeccHhhhhcCC
Confidence 999999999999998 79999999999999999999989999999999999999986 7899999999999999999999
Q ss_pred cHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCC--CCCCceeeeeeechhhhhhHHHHHHHHh
Q 007481 161 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK--RPSTLTEEVVRIRRMREVNQEAVLLSLC 238 (602)
Q Consensus 161 f~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~k~~~l~~l~ 238 (602)
|.+.+..|+..+|...|+++||||+++.+..++..++.+|..+.+..... ....+.|.++.+.... .+...|..++
T Consensus 191 f~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~--~k~~~L~~ll 268 (513)
T COG0513 191 FIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE--EKLELLLKLL 268 (513)
T ss_pred CHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH--HHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888875544 7788899888886422 5788888888
Q ss_pred hhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEc
Q 007481 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINY 318 (602)
Q Consensus 239 ~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~ 318 (602)
......++||||+|+..++.++..|...|+++..|||+++|.+|.++++.|++|+++||||||+++||||||++++||||
T Consensus 269 ~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Viny 348 (513)
T COG0513 269 KDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINY 348 (513)
T ss_pred hcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEc
Confidence 87777789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHhhhcccCCCcceEEEEEecC-cHHHHHHHHHHhcCcc
Q 007481 319 ACPRDLTSYVHRVGRTARAGREGYAVTFVTDN-DRSLLKAIAKRAGSKL 366 (602)
Q Consensus 319 d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~-d~~~l~~i~~~~~~~~ 366 (602)
|+|.+++.|+||+|||||+|..|.+++|+.+. |...+..+++..+..+
T Consensus 349 D~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~ 397 (513)
T COG0513 349 DLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKL 397 (513)
T ss_pred cCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999986 8899999988765543
No 4
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4e-68 Score=559.28 Aligned_cols=356 Identities=39% Similarity=0.579 Sum_probs=321.8
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcC-C--CCCCCcEEEEEcCh
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYR-P--KRIPAIRVLILTPT 78 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~-~--~~~~~~~vLiL~Pt 78 (602)
+++||+++.++|...||+.|||||.+.||.++.|+|+++.|.||||||++|++|++.++... . ....++++|||+||
T Consensus 95 ~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PT 174 (519)
T KOG0331|consen 95 ELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPT 174 (519)
T ss_pred cccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCc
Confidence 68999999999999999999999999999999999999999999999999999999999862 1 12457899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccccc
Q 007481 79 RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 158 (602)
Q Consensus 79 r~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~ 158 (602)
||||.|+...+..++..+.+++++++||.+...|...+..+.+|+|+||++|+|++... ..+|+.+.++|+||||+|++
T Consensus 175 RELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g-~~~l~~v~ylVLDEADrMld 253 (519)
T KOG0331|consen 175 RELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEG-SLNLSRVTYLVLDEADRMLD 253 (519)
T ss_pred HHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcC-CccccceeEEEeccHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999985 68999999999999999999
Q ss_pred CCcHHHHHHHHHhC-CCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCC--CCCCCceeeeeeechhhhhhHHHHHH
Q 007481 159 LGFSAEIHELVRLC-PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSA--KRPSTLTEEVVRIRRMREVNQEAVLL 235 (602)
Q Consensus 159 ~gf~~~i~~i~~~~-~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~k~~~l~ 235 (602)
+||...+..|+..+ ++..|++++|||+|..+..++..++.+|+.+.+.... ....++.|....+.. ..+...|.
T Consensus 254 mGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~---~~K~~~l~ 330 (519)
T KOG0331|consen 254 MGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDE---TAKLRKLG 330 (519)
T ss_pred cccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCH---HHHHHHHH
Confidence 99999999999999 5566899999999999999999999999999876542 334455665555543 33334444
Q ss_pred HHhh---hcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCc
Q 007481 236 SLCS---KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGV 312 (602)
Q Consensus 236 ~l~~---~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v 312 (602)
.++. ...++++||||.|+..|+.|...|...++++..|||+.+|.+|..+|+.|++|++.||||||+++||||||+|
T Consensus 331 ~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV 410 (519)
T KOG0331|consen 331 KLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDV 410 (519)
T ss_pred HHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccc
Confidence 4443 3457899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHH
Q 007481 313 QTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361 (602)
Q Consensus 313 ~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~ 361 (602)
++|||||+|.+.++|+||+|||||+|+.|.+++|++..+......+.+.
T Consensus 411 ~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~ 459 (519)
T KOG0331|consen 411 DLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKV 459 (519)
T ss_pred cEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988777766554
No 5
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-67 Score=514.26 Aligned_cols=371 Identities=41% Similarity=0.606 Sum_probs=339.2
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+|||++|+.+.|..+|+..|||+|..|||.+|.|+|+|.+|.||||||++|.+|++++|...+. +..+|||+|||+|
T Consensus 11 ~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~---giFalvlTPTrEL 87 (442)
T KOG0340|consen 11 ILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPY---GIFALVLTPTREL 87 (442)
T ss_pred hcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCC---cceEEEecchHHH
Confidence 6999999999999999999999999999999999999999999999999999999999987764 4468999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHcc---CCCCCCCcceEEEeCcccccc
Q 007481 82 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS---MSVDLDDLAVLILDEADRLLE 158 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~---~~~~l~~l~llVlDEah~l~~ 158 (602)
|.|+.+.|..+.+..++++++++||.+...+...|...|+|||+|||++.+++.++ ..+.+..+.++|+||||++++
T Consensus 88 A~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~ 167 (442)
T KOG0340|consen 88 ALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLA 167 (442)
T ss_pred HHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhc
Confidence 99999999999999999999999999999999999999999999999999999987 345688899999999999999
Q ss_pred CCcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCC--CeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHH
Q 007481 159 LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTK--PLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 236 (602)
Q Consensus 159 ~gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~--p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~ 236 (602)
..|.+.+..+.+.+|..+|+++||||+++.+..+....... ...+...+....+..+.+.++.++. ..+..++..
T Consensus 168 ~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~---~vkdaYLv~ 244 (442)
T KOG0340|consen 168 GCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSI---DVKDAYLVH 244 (442)
T ss_pred cchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecch---hhhHHHHHH
Confidence 99999999999999999999999999999998887766665 4455566667778889999988754 455666666
Q ss_pred Hhh---hcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCcc
Q 007481 237 LCS---KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQ 313 (602)
Q Consensus 237 l~~---~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~ 313 (602)
++. ....+.++||+++...|+.|+..|+.+++.+..|||.|+|.+|...+.+|+++...||||||+++||||||.|+
T Consensus 245 ~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~ 324 (442)
T KOG0340|consen 245 LLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVE 324 (442)
T ss_pred HHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCcee
Confidence 554 22467899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcchhhhhhhhhhHH
Q 007481 314 TVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITK 378 (602)
Q Consensus 314 ~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~~~~~~~ 378 (602)
+|||||+|.++..|+||+||++|+|+.|.+|+++++.|.+.+.+|++..|.++............
T Consensus 325 LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~~~~~~~ 389 (442)
T KOG0340|consen 325 LVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKVQRTVEL 389 (442)
T ss_pred EEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccccchhhhe
Confidence 99999999999999999999999999999999999999999999999999998877666554443
No 6
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-64 Score=510.29 Aligned_cols=357 Identities=39% Similarity=0.619 Sum_probs=321.4
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCc--EEEEEcChH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAI--RVLILTPTR 79 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~--~vLiL~Ptr 79 (602)
..+|+++|+.++..+||...||.|..+||.++.++||++.++||||||+||++|+++.+..+....++. -+|||+|||
T Consensus 10 ~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTR 89 (567)
T KOG0345|consen 10 APPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTR 89 (567)
T ss_pred CCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcH
Confidence 467889999999999999999999999999999999999999999999999999999997766554444 579999999
Q ss_pred HHHHHHHHHHHHHhhc-CCceEEEEECCCCHHHHHHHH-cCCCcEEEECcHHHHHHHHc-cCCCCCCCcceEEEeCcccc
Q 007481 80 ELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETAL-RSMPDIVVATPGRMIDHLRN-SMSVDLDDLAVLILDEADRL 156 (602)
Q Consensus 80 ~La~Q~~~~~~~l~~~-~~i~v~~~~g~~~~~~~~~~l-~~~~~IvI~Tp~~L~~~l~~-~~~~~l~~l~llVlDEah~l 156 (602)
|||.|+.+++..|... .++++.+++||.+.......+ ..+++|+|+|||+|.+++.+ ...+++.++++||+||||++
T Consensus 90 ELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrL 169 (567)
T KOG0345|consen 90 ELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRL 169 (567)
T ss_pred HHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhH
Confidence 9999999999999887 789999999998876655544 56789999999999999987 34456779999999999999
Q ss_pred ccCCcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCC--CCCCceeeeeeechhhhhhHHHHH
Q 007481 157 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK--RPSTLTEEVVRIRRMREVNQEAVL 234 (602)
Q Consensus 157 ~~~gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~k~~~l 234 (602)
+++||...+..|+..+|+.+++-|||||.+..+.++...++.+|+.+.+..... .|..+..+++.|.+ ..+...+
T Consensus 170 ldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a---~eK~~~l 246 (567)
T KOG0345|consen 170 LDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEA---DEKLSQL 246 (567)
T ss_pred hcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecH---HHHHHHH
Confidence 999999999999999999999999999999999999999999999999887665 77778888887765 4556667
Q ss_pred HHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCc
Q 007481 235 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGV 312 (602)
Q Consensus 235 ~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~--g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v 312 (602)
..++......++|||++|...+++....|... ...+..+||.|++..|..+++.|++..-.+|+|||+++||||||++
T Consensus 247 v~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~i 326 (567)
T KOG0345|consen 247 VHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGI 326 (567)
T ss_pred HHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCc
Confidence 77777777889999999999999998888765 6788999999999999999999999888899999999999999999
Q ss_pred cEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHH
Q 007481 313 QTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361 (602)
Q Consensus 313 ~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~ 361 (602)
++||+||+|.++..|+||+|||||+|+.|.+|+|+.+.+..++..+.-.
T Consensus 327 D~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~ 375 (567)
T KOG0345|consen 327 DLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIK 375 (567)
T ss_pred eEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999877777666443
No 7
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=6e-65 Score=520.98 Aligned_cols=423 Identities=33% Similarity=0.535 Sum_probs=359.5
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCC-CCCCCcEEEEEcChHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP-KRIPAIRVLILTPTRE 80 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~-~~~~~~~vLiL~Ptr~ 80 (602)
+|+||...+++|...+|..||.+|+.+||.+|+|+|||..|.||||||+||++|++++|.... ....|.-+|||.||||
T Consensus 73 dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRE 152 (758)
T KOG0343|consen 73 DLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRE 152 (758)
T ss_pred hCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHH
Confidence 799999999999999999999999999999999999999999999999999999999987532 1234566999999999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC
Q 007481 81 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 160 (602)
Q Consensus 81 La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g 160 (602)
||.|+++.+.+.+.+.++..+++.||.........+ ...+|+|||||||++||.....++.+++.+||+||||+|+++|
T Consensus 153 LA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMG 231 (758)
T KOG0343|consen 153 LALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMG 231 (758)
T ss_pred HHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHh
Confidence 999999999999999999999999999876554444 5579999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCC--CCCCCCCceeeeeeechhhhhhHHHHHHHHh
Q 007481 161 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADP--SAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238 (602)
Q Consensus 161 f~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~ 238 (602)
|...+..|+..+|+.+|++|||||.+..+.+++.+.+.+|..+.+.. ....|..+.|.|+.++ ...+..+|..++
T Consensus 232 Fk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~---l~~Ki~~L~sFI 308 (758)
T KOG0343|consen 232 FKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVP---LEDKIDMLWSFI 308 (758)
T ss_pred HHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEe---hhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988763 3567888999988875 467888899999
Q ss_pred hhcCCCeEEEEeCcHHHHHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEE
Q 007481 239 SKTFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI 316 (602)
Q Consensus 239 ~~~~~~kvIIF~~s~~~a~~l~~~L~~~--g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI 316 (602)
..+...++|||+.|.+++..+++.|..+ |+++..|||.|+|..|.++...|.....-||+|||+++||||+|.|++||
T Consensus 309 ~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwVi 388 (758)
T KOG0343|consen 309 KSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVI 388 (758)
T ss_pred HhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEE
Confidence 9999999999999999999999999875 88999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhhHHHHhhhcccCCCcceEEEEEecCc-HHHHHHHHHHhcCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 007481 317 NYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND-RSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQ 395 (602)
Q Consensus 317 ~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 395 (602)
++|||.+..+||||+||++|.+..|.+++++.+++ ..++..+.+. +.++....+++..... +...++.++.
T Consensus 389 Q~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k-~I~i~~i~i~~~k~~~-------i~~~l~~ll~ 460 (758)
T KOG0343|consen 389 QVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK-KIPIKEIKIDPEKLTS-------IRNKLEALLA 460 (758)
T ss_pred EecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc-CCCHHhhccCHHHhhh-------HHHHHHHHHh
Confidence 99999999999999999999999999999999998 5566666554 3555555555443333 3344444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccccccHHHHHHHHHH
Q 007481 396 EEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKA 444 (602)
Q Consensus 396 ~e~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 444 (602)
...+-++.. .+.++.+.+.++-.-.+..|+-......++.+
T Consensus 461 ~~~eLk~~a--------qka~isY~rsi~~~rdK~~f~~~~l~~~afa~ 501 (758)
T KOG0343|consen 461 KDPELKEYA--------QKAFISYLRSIYLMRDKRVFDVEKLDIEAFAD 501 (758)
T ss_pred hCHHHHHHH--------HHHHHHHHHHHHhhccchhhcchhccHHHHHH
Confidence 333222211 13455666666555555556554444444443
No 8
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.6e-64 Score=514.23 Aligned_cols=377 Identities=34% Similarity=0.522 Sum_probs=336.4
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCC-CCCCcEEEEEcChHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK-RIPAIRVLILTPTRE 80 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~-~~~~~~vLiL~Ptr~ 80 (602)
++.||+..++|+..+||.++|++|+.+||.++.|+|+++.|.||||||+||+||+++.+..... ..++..+|||||||+
T Consensus 86 ~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRE 165 (543)
T KOG0342|consen 86 EGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRE 165 (543)
T ss_pred ccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHH
Confidence 5789999999999999999999999999999999999999999999999999999999887543 246778999999999
Q ss_pred HHHHHHHHHHHHhhcC-CceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccC
Q 007481 81 LAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 159 (602)
Q Consensus 81 La~Q~~~~~~~l~~~~-~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~ 159 (602)
||.|++.+++.+..+. ++.+..+.||.........+..+++|+|+|||+|+||+.|...+.+.+++++|+||||++++.
T Consensus 166 LA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~ 245 (543)
T KOG0342|consen 166 LAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDI 245 (543)
T ss_pred HHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhc
Confidence 9999999999999998 899999999999888888888899999999999999999988888888899999999999999
Q ss_pred CcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCC-CeEEecCCCCCC--CCCceeeeeeechhhhhhHHHHHHH
Q 007481 160 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTK-PLRLSADPSAKR--PSTLTEEVVRIRRMREVNQEAVLLS 236 (602)
Q Consensus 160 gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~-p~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~k~~~l~~ 236 (602)
||.+.+..|+..+|..+|+++||||.++.+.+++...+.. |+.+.++..... ...+.|-++.+.. ..+...+..
T Consensus 246 GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~---~~~f~ll~~ 322 (543)
T KOG0342|consen 246 GFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPS---DSRFSLLYT 322 (543)
T ss_pred ccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccc---cchHHHHHH
Confidence 9999999999999999999999999999999999888876 888877665443 3456666665543 333555666
Q ss_pred HhhhcCC-CeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEE
Q 007481 237 LCSKTFT-SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 315 (602)
Q Consensus 237 l~~~~~~-~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~V 315 (602)
++.++.. .++||||+|...+..++++|+...++|..+||..+|..|..+...|++.+.-||||||+++||+|+|+|++|
T Consensus 323 ~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~V 402 (543)
T KOG0342|consen 323 FLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWV 402 (543)
T ss_pred HHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEE
Confidence 6666655 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcchhhhhhhhhhHHHHHHHH
Q 007481 316 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIE 384 (602)
Q Consensus 316 I~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 384 (602)
|+||+|.++.+||||+|||||.|..|.+++++.+.+..+++++. ..++....+++.....+....+
T Consensus 403 vQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK---~lpl~~~e~~~~~~~~v~~~~~ 468 (543)
T KOG0342|consen 403 VQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK---KLPLEEFEFPPLKPEDVQSQLE 468 (543)
T ss_pred EEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh---hCCCcccCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 4455555555555544444333
No 9
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.3e-65 Score=483.75 Aligned_cols=363 Identities=32% Similarity=0.533 Sum_probs=340.4
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+|||++.+|+++.+.||..|+.+|+.|||.++.|+|||+.|..|+|||.+|.+.+++.+.-+. ...++|||+|||||
T Consensus 31 ~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~---r~tQ~lilsPTREL 107 (400)
T KOG0328|consen 31 DMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISV---RETQALILSPTREL 107 (400)
T ss_pred hcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccccc---ceeeEEEecChHHH
Confidence 799999999999999999999999999999999999999999999999999999888765543 34689999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCc
Q 007481 82 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF 161 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf 161 (602)
|.|+.+.+..++.+.++.+..+.||.+..+....+..+.++|.+|||++++++... .+....+.+||+||||.|++.||
T Consensus 108 a~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~-~L~tr~vkmlVLDEaDemL~kgf 186 (400)
T KOG0328|consen 108 AVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRR-SLRTRAVKMLVLDEADEMLNKGF 186 (400)
T ss_pred HHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhc-cccccceeEEEeccHHHHHHhhH
Confidence 99999999999999999999999999988888888899999999999999999885 67788899999999999999999
Q ss_pred HHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhhc
Q 007481 162 SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241 (602)
Q Consensus 162 ~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~ 241 (602)
..++..+++.+|+..|++++|||+|.++.+....++.+|+.+.+........++.+.++.+. .+..+...|+.+....
T Consensus 187 k~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve--~EewKfdtLcdLYd~L 264 (400)
T KOG0328|consen 187 KEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVE--KEEWKFDTLCDLYDTL 264 (400)
T ss_pred HHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeec--hhhhhHhHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999888888888999988875 4566788888888877
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCC
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACP 321 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p 321 (602)
.-...+|||+|+..+++|.+.+....+.+..+||+|++.+|..++.+|++|+.+|||+||+-+||+|+|.|++|||||+|
T Consensus 265 tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP 344 (400)
T KOG0328|consen 265 TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLP 344 (400)
T ss_pred ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcchhhh
Q 007481 322 RDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRI 370 (602)
Q Consensus 322 ~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~~~~~ 370 (602)
.+.+.|+||+||.||.|+.|.+|-|+..+|...++.|++.+...+....
T Consensus 345 ~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp 393 (400)
T KOG0328|consen 345 NNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMP 393 (400)
T ss_pred ccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhccccc
Confidence 9999999999999999999999999999999999999998765555433
No 10
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=5.6e-64 Score=511.75 Aligned_cols=357 Identities=38% Similarity=0.592 Sum_probs=331.3
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCC------CCCCCcEEEEE
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP------KRIPAIRVLIL 75 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~------~~~~~~~vLiL 75 (602)
+.||+..+++.+...||..|||||..+||..++++|+|+.|.||||||++|++|++..+..-+ +...++.++||
T Consensus 249 E~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiil 328 (673)
T KOG0333|consen 249 ESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIIL 328 (673)
T ss_pred hcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeee
Confidence 679999999999999999999999999999999999999999999999999999999888766 23568899999
Q ss_pred cChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccc
Q 007481 76 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 155 (602)
Q Consensus 76 ~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~ 155 (602)
+|||+|+.|+.+.-.+|+...+++++.++||.+..++-..+..+++|+|+||++|++.|.+. .+-++.+.++|+||||+
T Consensus 329 aptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr-~lvl~qctyvvldeadr 407 (673)
T KOG0333|consen 329 APTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENR-YLVLNQCTYVVLDEADR 407 (673)
T ss_pred chHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHH-HHHhccCceEeccchhh
Confidence 99999999999999999999999999999999999998899999999999999999999986 46788999999999999
Q ss_pred cccCCcHHHHHHHHHhCCC-------------------------CcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCC
Q 007481 156 LLELGFSAEIHELVRLCPK-------------------------RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK 210 (602)
Q Consensus 156 l~~~gf~~~i~~i~~~~~~-------------------------~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~ 210 (602)
|.++||.+.+..++.+.|. -+|+++||||||+.+..++..++..|+.+.+.....
T Consensus 408 miDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk 487 (673)
T KOG0333|consen 408 MIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGK 487 (673)
T ss_pred hhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCC
Confidence 9999999999999998873 169999999999999999999999999999988887
Q ss_pred CCCCceeeeeeechhhhhhHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHh
Q 007481 211 RPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 290 (602)
Q Consensus 211 ~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~ 290 (602)
..+-+.|.++.+.. ..+...|..++...+..++|||+|+++.|+.|++.|...|+.|+.|||+-+|++|+.+|+.|+
T Consensus 488 ~~~rveQ~v~m~~e---d~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr 564 (673)
T KOG0333|consen 488 PTPRVEQKVEMVSE---DEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFR 564 (673)
T ss_pred CccchheEEEEecc---hHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHH
Confidence 77777887777643 344666777888888899999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHh
Q 007481 291 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362 (602)
Q Consensus 291 ~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~ 362 (602)
.|..+||||||+++||||||+|++|||||++.+...|+||||||||+|+.|++++|+++.|...++.+.+.+
T Consensus 565 ~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l 636 (673)
T KOG0333|consen 565 EGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQAL 636 (673)
T ss_pred hcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999977777665543
No 11
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.1e-62 Score=529.14 Aligned_cols=362 Identities=38% Similarity=0.576 Sum_probs=324.5
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCC----CCCCcEEEEEcC
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK----RIPAIRVLILTP 77 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~----~~~~~~vLiL~P 77 (602)
+|||++.++++|.++||..|||+|++|||.++.|+|++++||||||||++|++|+++.+..... ...++++|||+|
T Consensus 12 ~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~P 91 (423)
T PRK04837 12 DFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAP 91 (423)
T ss_pred hCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECC
Confidence 6899999999999999999999999999999999999999999999999999999999876432 124578999999
Q ss_pred hHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccc
Q 007481 78 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 157 (602)
Q Consensus 78 tr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~ 157 (602)
|++||.|+++.+..++...++++..++||.+...+...+..+++|+|+||++|++++.+. .+.+.++++|||||||+++
T Consensus 92 treLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~-~~~l~~v~~lViDEad~l~ 170 (423)
T PRK04837 92 TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN-HINLGAIQVVVLDEADRMF 170 (423)
T ss_pred cHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcC-CcccccccEEEEecHHHHh
Confidence 999999999999999999999999999999988888888889999999999999999874 5789999999999999999
Q ss_pred cCCcHHHHHHHHHhCCC--CcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHH
Q 007481 158 ELGFSAEIHELVRLCPK--RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235 (602)
Q Consensus 158 ~~gf~~~i~~i~~~~~~--~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~ 235 (602)
+++|...+..++..++. ..+.++||||++..+..+....+..|..+.+.........+.+.+.... ...+...+.
T Consensus 171 ~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~---~~~k~~~l~ 247 (423)
T PRK04837 171 DLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPS---NEEKMRLLQ 247 (423)
T ss_pred hcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCC---HHHHHHHHH
Confidence 99999999999998885 5678999999999999999899999988877655544455555544332 234556677
Q ss_pred HHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEE
Q 007481 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 315 (602)
Q Consensus 236 ~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~V 315 (602)
.++......++||||+++..|+.+...|...|+.+..+||++++.+|..+++.|++|+++|||||+++++|||+|+|++|
T Consensus 248 ~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~V 327 (423)
T PRK04837 248 TLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHV 327 (423)
T ss_pred HHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEE
Confidence 77766667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcch
Q 007481 316 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 367 (602)
Q Consensus 316 I~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~~ 367 (602)
||||+|.+...|+||+||+||+|+.|.+++|+++.+...+..+++.++..+.
T Consensus 328 I~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~ 379 (423)
T PRK04837 328 FNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIP 379 (423)
T ss_pred EEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999999999999999999998888888776655543
No 12
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.1e-61 Score=537.90 Aligned_cols=365 Identities=39% Similarity=0.622 Sum_probs=331.6
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+|+|+++++++|.++||..|||+|.++||.++.|+|+|+.||||||||++|++|+++.+.... ..+++||||||++|
T Consensus 10 ~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~---~~~~~LIL~PTreL 86 (629)
T PRK11634 10 DLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL---KAPQILVLAPTREL 86 (629)
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhcc---CCCeEEEEeCcHHH
Confidence 689999999999999999999999999999999999999999999999999999999886432 35689999999999
Q ss_pred HHHHHHHHHHHhhcC-CceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC
Q 007481 82 AVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 160 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~-~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g 160 (602)
|.|+++.+..|.... ++.+..++|+.+...+...+...++|||+||++|++++... .+.++++.+|||||||+|++++
T Consensus 87 a~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~-~l~l~~l~~lVlDEAd~ml~~g 165 (629)
T PRK11634 87 AVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG-TLDLSKLSGLVLDEADEMLRMG 165 (629)
T ss_pred HHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcC-CcchhhceEEEeccHHHHhhcc
Confidence 999999999987764 79999999999988888888899999999999999999874 5789999999999999999999
Q ss_pred cHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhh
Q 007481 161 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240 (602)
Q Consensus 161 f~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~ 240 (602)
|...+..|+..+|...|+++||||+|+.+..+...++.+|..+.+.........+.+.++.+.. ..+...+..++..
T Consensus 166 f~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~---~~k~~~L~~~L~~ 242 (629)
T PRK11634 166 FIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG---MRKNEALVRFLEA 242 (629)
T ss_pred cHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEech---hhHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999888776665555666676666543 3445566666666
Q ss_pred cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCC
Q 007481 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC 320 (602)
Q Consensus 241 ~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~ 320 (602)
....++||||+|+..+..++..|...|+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++|||||+
T Consensus 243 ~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~ 322 (629)
T PRK11634 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDI 322 (629)
T ss_pred cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCC
Confidence 66679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcchhhhhhh
Q 007481 321 PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAE 373 (602)
Q Consensus 321 p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~~ 373 (602)
|.+..+|+||+|||||+|+.|.+++|+.+.+...++.|.+.++..+....++.
T Consensus 323 P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~ 375 (629)
T PRK11634 323 PMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPN 375 (629)
T ss_pred CCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecCCc
Confidence 99999999999999999999999999999999999999998887776655544
No 13
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8e-63 Score=494.01 Aligned_cols=414 Identities=36% Similarity=0.549 Sum_probs=343.8
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCC---CCCCcEEEEEcCh
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK---RIPAIRVLILTPT 78 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~---~~~~~~vLiL~Pt 78 (602)
+|||++.|++|+..+||.+||-+|+.+||.+|+|+|+++.|.||||||++|+||+++.++.... ...++.++||+||
T Consensus 23 ~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPT 102 (569)
T KOG0346|consen 23 EFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPT 102 (569)
T ss_pred HhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEech
Confidence 6999999999999999999999999999999999999999999999999999999999987543 3467889999999
Q ss_pred HHHHHHHHHHHHHHhhcC--CceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccc
Q 007481 79 RELAVQVHSMIEKIAQFT--DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 156 (602)
Q Consensus 79 r~La~Q~~~~~~~l~~~~--~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l 156 (602)
+|||.|+|..+.++..++ .+++.-+..+.+.......+...|+|||+||++++.++.......++.++++|+||||.+
T Consensus 103 kEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLl 182 (569)
T KOG0346|consen 103 KELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLL 182 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhh
Confidence 999999999999999887 466677777777777778899999999999999999999865577899999999999999
Q ss_pred ccCCcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCC-CCCCCceeeeeeechhhhhhHHHHHH
Q 007481 157 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSA-KRPSTLTEEVVRIRRMREVNQEAVLL 235 (602)
Q Consensus 157 ~~~gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~k~~~l~ 235 (602)
+..||.+.+..+..++|+..|.++||||+.+++..+.++++++|+.+...... ..+..+.|..+.|. +.++..++.
T Consensus 183 lsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cs---e~DKfllly 259 (569)
T KOG0346|consen 183 LSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCS---EEDKFLLLY 259 (569)
T ss_pred hhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEec---cchhHHHHH
Confidence 99999999999999999999999999999999999999999999998765543 45667888888875 466666666
Q ss_pred HHhh-hcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc------------
Q 007481 236 SLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV------------ 302 (602)
Q Consensus 236 ~l~~-~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~------------ 302 (602)
.++. ....+++|||+||++.|.++.-+|...|++.++|+|.|+...|..++++|+.|-++||||||.
T Consensus 260 allKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~k 339 (569)
T KOG0346|consen 260 ALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVK 339 (569)
T ss_pred HHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcccc
Confidence 6654 455789999999999999999999999999999999999999999999999999999999991
Q ss_pred -----------------------cccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHH---HHH
Q 007481 303 -----------------------AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS---LLK 356 (602)
Q Consensus 303 -----------------------~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~---~l~ 356 (602)
++||||+.+|++|||||+|.+..+||||+|||||++++|.+++|+.+.+.. .++
T Consensus 340 gk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le 419 (569)
T KOG0346|consen 340 GKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLE 419 (569)
T ss_pred ccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHH
Confidence 579999999999999999999999999999999999999999999999876 333
Q ss_pred HHHHHh----cCc-chhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007481 357 AIAKRA----GSK-LKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 421 (602)
Q Consensus 357 ~i~~~~----~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~e~~~~~~~ 421 (602)
.+.... +.+ +....+..+.+ ....-+++|-..+...-.-.+.+++....++...|++-.||+
T Consensus 420 ~~~~d~~~~~~~qilqPY~f~~eev---esfryR~eD~~ravTkvAvreaR~kEikqEll~SeKLK~~Fe 486 (569)
T KOG0346|consen 420 SILKDENRQEGRQILQPYQFRMEEV---ESFRYRAEDALRAVTKVAVREARLKEIKQELLNSEKLKAFFE 486 (569)
T ss_pred HHHhhHHhhcCccccccccchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 333221 111 11111112222 222224455555555444444444444445555555555543
No 14
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.5e-61 Score=523.41 Aligned_cols=361 Identities=39% Similarity=0.626 Sum_probs=324.3
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCC---CCCCcEEEEEcCh
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK---RIPAIRVLILTPT 78 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~---~~~~~~vLiL~Pt 78 (602)
+|||+++|+++|.++||..|||+|.++||.++.|+|+|++||||||||++|++|+++.+..... ....+++|||+||
T Consensus 5 ~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~Pt 84 (456)
T PRK10590 5 SLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPT 84 (456)
T ss_pred HcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCc
Confidence 6899999999999999999999999999999999999999999999999999999999875432 1234589999999
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccccc
Q 007481 79 RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 158 (602)
Q Consensus 79 r~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~ 158 (602)
++||.|+++.+..+..+.++.+..++|+.+...+...+...++|+|+||++|++++... .+.++.+++|||||||+|++
T Consensus 85 reLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~-~~~l~~v~~lViDEah~ll~ 163 (456)
T PRK10590 85 RELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQN-AVKLDQVEILVLDEADRMLD 163 (456)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcC-CcccccceEEEeecHHHHhc
Confidence 99999999999999999999999999999988888888899999999999999998764 56789999999999999999
Q ss_pred CCcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHh
Q 007481 159 LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 238 (602)
Q Consensus 159 ~gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~ 238 (602)
++|...+..++..++...|+++||||+++++..+....+.+|..+.+.........+.+.+..+. ...+..++..++
T Consensus 164 ~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~---~~~k~~~l~~l~ 240 (456)
T PRK10590 164 MGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVD---KKRKRELLSQMI 240 (456)
T ss_pred cccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcC---HHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988876555444555555555443 233455566666
Q ss_pred hhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEc
Q 007481 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINY 318 (602)
Q Consensus 239 ~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~ 318 (602)
......++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|+|++||||
T Consensus 241 ~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~ 320 (456)
T PRK10590 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320 (456)
T ss_pred HcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEe
Confidence 66666799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcc
Q 007481 319 ACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 366 (602)
Q Consensus 319 d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~ 366 (602)
++|.+..+|+||+||+||+|..|.+++|+...|..+++.+++.+...+
T Consensus 321 ~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~ 368 (456)
T PRK10590 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEI 368 (456)
T ss_pred CCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999988887765544
No 15
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=5.5e-61 Score=523.58 Aligned_cols=359 Identities=37% Similarity=0.586 Sum_probs=326.6
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+|+|++.++++|..+||..|||+|++|||.++.|+|++++||||||||++|++|+++++.... ..+++|||+||++|
T Consensus 8 ~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~---~~~~~lil~PtreL 84 (460)
T PRK11776 8 TLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR---FRVQALVLCPTREL 84 (460)
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc---CCceEEEEeCCHHH
Confidence 689999999999999999999999999999999999999999999999999999999985432 24579999999999
Q ss_pred HHHHHHHHHHHhhcC-CceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC
Q 007481 82 AVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 160 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~-~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g 160 (602)
|.|+++.++.++... ++.+..++||.+...+...+..+++|+|+||++|.+++.+. .+.+.++++|||||||+|++++
T Consensus 85 a~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~-~~~l~~l~~lViDEad~~l~~g 163 (460)
T PRK11776 85 ADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKG-TLDLDALNTLVLDEADRMLDMG 163 (460)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcC-CccHHHCCEEEEECHHHHhCcC
Confidence 999999999988754 78999999999998888888999999999999999999874 5778999999999999999999
Q ss_pred cHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhh
Q 007481 161 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240 (602)
Q Consensus 161 f~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~ 240 (602)
|...+..++..++...|+++||||+++.+..+...++..|..+.+.... ....+.+.++.+.. ..+...+..++..
T Consensus 164 ~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~---~~k~~~l~~ll~~ 239 (460)
T PRK11776 164 FQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSP---DERLPALQRLLLH 239 (460)
T ss_pred cHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCc---HHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988876554 33446666666543 2366667777777
Q ss_pred cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCC
Q 007481 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC 320 (602)
Q Consensus 241 ~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~ 320 (602)
....++||||+|+..++.++..|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++++|||||+
T Consensus 240 ~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~ 319 (460)
T PRK11776 240 HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYEL 319 (460)
T ss_pred cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecC
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcchh
Q 007481 321 PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 368 (602)
Q Consensus 321 p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~~~ 368 (602)
|.+..+|+||+|||||+|..|.+++|+.+.|...+..+.+..+..+..
T Consensus 320 p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~ 367 (460)
T PRK11776 320 ARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNW 367 (460)
T ss_pred CCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCce
Confidence 999999999999999999999999999999999988888877665544
No 16
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.2e-61 Score=531.20 Aligned_cols=363 Identities=37% Similarity=0.582 Sum_probs=324.7
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCC----CCCCcEEEEEcC
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK----RIPAIRVLILTP 77 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~----~~~~~~vLiL~P 77 (602)
+|+|++.|+++|..+||..|||+|+++||.++.|+|+|+.||||||||++|++|+++.+..... ....+++|||+|
T Consensus 13 ~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~P 92 (572)
T PRK04537 13 SFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAP 92 (572)
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeC
Confidence 5899999999999999999999999999999999999999999999999999999999875431 112478999999
Q ss_pred hHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccc
Q 007481 78 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 157 (602)
Q Consensus 78 tr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~ 157 (602)
|++||.|+++.+..|....++.+..++|+.+...+...+...++|+|+||++|++++.+...+.+..+++|||||||+|+
T Consensus 93 TreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~ll 172 (572)
T PRK04537 93 TRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMF 172 (572)
T ss_pred cHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHh
Confidence 99999999999999999999999999999999888888888899999999999999987656778899999999999999
Q ss_pred cCCcHHHHHHHHHhCCC--CcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHH
Q 007481 158 ELGFSAEIHELVRLCPK--RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235 (602)
Q Consensus 158 ~~gf~~~i~~i~~~~~~--~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~ 235 (602)
+++|...+..|+..++. ..|+++||||++..+..+....+..|..+.+.........+.+.++... ...+...+.
T Consensus 173 d~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~---~~~k~~~L~ 249 (572)
T PRK04537 173 DLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPA---DEEKQTLLL 249 (572)
T ss_pred hcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecC---HHHHHHHHH
Confidence 99999999999999887 7899999999999999999999998877766555444445555554432 344556667
Q ss_pred HHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEE
Q 007481 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 315 (602)
Q Consensus 236 ~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~V 315 (602)
.++....+.++||||+|+..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++|
T Consensus 250 ~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~V 329 (572)
T PRK04537 250 GLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYV 329 (572)
T ss_pred HHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEE
Confidence 67766667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcch
Q 007481 316 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 367 (602)
Q Consensus 316 I~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~~ 367 (602)
||||+|.+...|+||+||+||.|..|.+++|+++.+...+..+.+.++.++.
T Consensus 330 Inyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~ 381 (572)
T PRK04537 330 YNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIP 381 (572)
T ss_pred EEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999888888888776655544
No 17
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.4e-60 Score=524.84 Aligned_cols=356 Identities=35% Similarity=0.543 Sum_probs=314.1
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCC--CCCCcEEEEEcChH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK--RIPAIRVLILTPTR 79 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~--~~~~~~vLiL~Ptr 79 (602)
+++|+++|+++|..+||..|||+|.++||.++.|+|+|++||||||||++|++|++.++...+. ...++.+|||+||+
T Consensus 134 ~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTr 213 (545)
T PTZ00110 134 YTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTR 213 (545)
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChH
Confidence 5789999999999999999999999999999999999999999999999999999998875432 12467899999999
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccC
Q 007481 80 ELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 159 (602)
Q Consensus 80 ~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~ 159 (602)
+||.|+++.+..|+...++++.+++|+.+...+...+..+++|+|+||++|++++.+. ...+..+++|||||||+|+++
T Consensus 214 eLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~-~~~l~~v~~lViDEAd~mld~ 292 (545)
T PTZ00110 214 ELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESN-VTNLRRVTYLVLDEADRMLDM 292 (545)
T ss_pred HHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcC-CCChhhCcEEEeehHHhhhhc
Confidence 9999999999999988899999999999988888889999999999999999999874 467899999999999999999
Q ss_pred CcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcC-CCeEEecCCCC-CCCCCceeeeeeechhhhhhHHHHHHHH
Q 007481 160 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLT-KPLRLSADPSA-KRPSTLTEEVVRIRRMREVNQEAVLLSL 237 (602)
Q Consensus 160 gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~-~p~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~k~~~l~~l 237 (602)
+|...+..|+..+++.+|+++||||++.++..++..++. .|+.+.+.... .....+.+.+..+.. ..+...|..+
T Consensus 293 gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~---~~k~~~L~~l 369 (545)
T PTZ00110 293 GFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEE---HEKRGKLKML 369 (545)
T ss_pred chHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEec---hhHHHHHHHH
Confidence 999999999999999999999999999999998887775 57776654332 222345555544432 3344445555
Q ss_pred hhhc--CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEE
Q 007481 238 CSKT--FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 315 (602)
Q Consensus 238 ~~~~--~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~V 315 (602)
+... ...++||||+++..|+.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|+|++|
T Consensus 370 l~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~V 449 (545)
T PTZ00110 370 LQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYV 449 (545)
T ss_pred HHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEE
Confidence 5433 46799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHH
Q 007481 316 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361 (602)
Q Consensus 316 I~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~ 361 (602)
||||+|.+..+|+||+||+||+|..|.+++|+++.+......+.+.
T Consensus 450 I~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~ 495 (545)
T PTZ00110 450 INFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKV 495 (545)
T ss_pred EEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999988877766554
No 18
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=4.4e-60 Score=513.12 Aligned_cols=360 Identities=40% Similarity=0.625 Sum_probs=323.0
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCC-CCCcEEEEEcChHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR-IPAIRVLILTPTRE 80 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~-~~~~~vLiL~Ptr~ 80 (602)
+|+|++.++++|..+||..|||+|.++||.++.|+|++++||||||||++|++|+++++...+.. ..++++|||+||++
T Consensus 5 ~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~e 84 (434)
T PRK11192 5 ELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRE 84 (434)
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHH
Confidence 68999999999999999999999999999999999999999999999999999999998753321 23468999999999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC
Q 007481 81 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 160 (602)
Q Consensus 81 La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g 160 (602)
||.|+++.+..|+.+.++.+..++|+.....+...+..+++|+|+||++|++++.+. .+.+.++++|||||||+|++++
T Consensus 85 La~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~-~~~~~~v~~lViDEah~~l~~~ 163 (434)
T PRK11192 85 LAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEE-NFDCRAVETLILDEADRMLDMG 163 (434)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC-CcCcccCCEEEEECHHHHhCCC
Confidence 999999999999999999999999999988888888889999999999999999874 5778999999999999999999
Q ss_pred cHHHHHHHHHhCCCCcceeeeeccCCh-hHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhh
Q 007481 161 FSAEIHELVRLCPKRRQTMLFSATLTE-DVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239 (602)
Q Consensus 161 f~~~i~~i~~~~~~~~q~il~SAT~~~-~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~ 239 (602)
|...+..+...++...|+++||||++. .+..+....+..|+.+...........+.+.+..+.. ...+..++..++.
T Consensus 164 ~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~--~~~k~~~l~~l~~ 241 (434)
T PRK11192 164 FAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADD--LEHKTALLCHLLK 241 (434)
T ss_pred cHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCC--HHHHHHHHHHHHh
Confidence 999999999999999999999999985 5788888888999988876665555556665554432 2345666777776
Q ss_pred hcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcC
Q 007481 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA 319 (602)
Q Consensus 240 ~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d 319 (602)
.....++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++|||||
T Consensus 242 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d 321 (434)
T PRK11192 242 QPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFD 321 (434)
T ss_pred cCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEEC
Confidence 65678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcC
Q 007481 320 CPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGS 364 (602)
Q Consensus 320 ~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~ 364 (602)
+|.+...|+||+||+||+|..|.+++|++..|...+..+.+.+..
T Consensus 322 ~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~ 366 (434)
T PRK11192 322 MPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEE 366 (434)
T ss_pred CCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999888888877665443
No 19
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-61 Score=495.61 Aligned_cols=362 Identities=40% Similarity=0.609 Sum_probs=313.1
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CCEEEEcCCCchHHHHHHHHHHHHHHcCCCC--------CCCcE-
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKR--------IPAIR- 71 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g-~dvii~a~TGSGKT~a~~l~il~~l~~~~~~--------~~~~~- 71 (602)
+|+||.++|++|..+||..|||||..+||.+..| .|+++.|.||||||+||.||+++.++...+. ..+++
T Consensus 185 ~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~ 264 (731)
T KOG0347|consen 185 NLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKP 264 (731)
T ss_pred cCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcc
Confidence 5899999999999999999999999999999999 7999999999999999999999966653321 23344
Q ss_pred -EEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCC--CCCCCcceE
Q 007481 72 -VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS--VDLDDLAVL 148 (602)
Q Consensus 72 -vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~--~~l~~l~ll 148 (602)
.||++||||||.|+.+.+...+.++++++..++||.....|.+.++..|+|||+|||||+.++..... -.+.++.+|
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcL 344 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCL 344 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEE
Confidence 89999999999999999999999999999999999999999999999999999999999999986543 257889999
Q ss_pred EEeCccccccCCcHHHHHHHHHhCC-----CCcceeeeeccCChh---------------------HHHHHH-H-hcCCC
Q 007481 149 ILDEADRLLELGFSAEIHELVRLCP-----KRRQTMLFSATLTED---------------------VDELIK-L-SLTKP 200 (602)
Q Consensus 149 VlDEah~l~~~gf~~~i~~i~~~~~-----~~~q~il~SAT~~~~---------------------~~~l~~-~-~l~~p 200 (602)
||||+|+|++.|+.+++..|+.++. ..+|++.||||++-. +..+++ . +..+|
T Consensus 345 VlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kp 424 (731)
T KOG0347|consen 345 VLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKP 424 (731)
T ss_pred EEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCC
Confidence 9999999999999999999988775 467999999998521 222222 1 23456
Q ss_pred eEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHH
Q 007481 201 LRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQA 280 (602)
Q Consensus 201 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~ 280 (602)
..+...+.......+.+..+.|.+ ..++.+|.+++ ..+++++|||||+++.+.+|+-+|+.+++....||+.|.|.
T Consensus 425 kiiD~t~q~~ta~~l~Es~I~C~~---~eKD~ylyYfl-~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QK 500 (731)
T KOG0347|consen 425 KIIDLTPQSATASTLTESLIECPP---LEKDLYLYYFL-TRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQK 500 (731)
T ss_pred eeEecCcchhHHHHHHHHhhcCCc---cccceeEEEEE-eecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHH
Confidence 777776666666667777777643 23334444443 34578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHH
Q 007481 281 QRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360 (602)
Q Consensus 281 eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~ 360 (602)
+|...++.|++....||||||+++||||||+|.|||||..|.+.+.|+||.|||+|++..|.+++|+.+.+...++.+.+
T Consensus 501 qRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~k 580 (731)
T KOG0347|consen 501 QRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCK 580 (731)
T ss_pred HHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HhcCcch
Q 007481 361 RAGSKLK 367 (602)
Q Consensus 361 ~~~~~~~ 367 (602)
.+.....
T Consensus 581 tL~k~~d 587 (731)
T KOG0347|consen 581 TLKKKED 587 (731)
T ss_pred HHhhccC
Confidence 7754433
No 20
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-60 Score=485.96 Aligned_cols=360 Identities=36% Similarity=0.530 Sum_probs=313.4
Q ss_pred CCCCCHHHHHHH-HHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCC---CCCcEEEEEcC
Q 007481 2 ELNLSRPLLRAC-EALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR---IPAIRVLILTP 77 (602)
Q Consensus 2 ~l~L~~~ll~~l-~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~---~~~~~vLiL~P 77 (602)
.|||++.++..| ..|++..||.+|++|||.+|+|+|++|.++||||||++|++|+++.|...... ..|+-+|||+|
T Consensus 140 ~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivP 219 (708)
T KOG0348|consen 140 SLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVP 219 (708)
T ss_pred hcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEec
Confidence 589999999999 46899999999999999999999999999999999999999999999875432 46788999999
Q ss_pred hHHHHHHHHHHHHHHhhcC-CceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccc
Q 007481 78 TRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 156 (602)
Q Consensus 78 tr~La~Q~~~~~~~l~~~~-~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l 156 (602)
|||||.|+|+.+.++.+.+ .+--+.+.||.........++.+.+|+|+|||||+|||.+...+.++.+.+||+||+|++
T Consensus 220 TREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrl 299 (708)
T KOG0348|consen 220 TRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRL 299 (708)
T ss_pred hHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHH
Confidence 9999999999999997764 344488899999888999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHhC-------------CCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCC---------------
Q 007481 157 LELGFSAEIHELVRLC-------------PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPS--------------- 208 (602)
Q Consensus 157 ~~~gf~~~i~~i~~~~-------------~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~--------------- 208 (602)
++.||...+..|+..+ |...|.+|+|||+++.+..++...+.+|+.+..+..
T Consensus 300 leLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~ 379 (708)
T KOG0348|consen 300 LELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVD 379 (708)
T ss_pred HhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcC
Confidence 9999999999998765 234689999999999999999999999999883321
Q ss_pred ----------CCCCCCceeeeeeechhhhhh-HHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhc-----------
Q 007481 209 ----------AKRPSTLTEEVVRIRRMREVN-QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA----------- 266 (602)
Q Consensus 209 ----------~~~~~~l~~~~~~~~~~~~~~-k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~----------- 266 (602)
...|..+.+.++.+++..... -..+|...++.....++|||+.+.+.++.-+..|...
T Consensus 380 ~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~ 459 (708)
T KOG0348|consen 380 DGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGA 459 (708)
T ss_pred CcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCC
Confidence 223445566666665532222 2234455566666789999999999999887777532
Q ss_pred -----------CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcc
Q 007481 267 -----------ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTA 335 (602)
Q Consensus 267 -----------g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~ 335 (602)
+.++..|||+|+|++|..+++.|....-.||+|||+++||||+|+|.+||.||+|.++.+|+||+|||+
T Consensus 460 ~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTA 539 (708)
T KOG0348|consen 460 PDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTA 539 (708)
T ss_pred cccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhh
Confidence 345788999999999999999999998889999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEEEecCcHHHHHHHHHH
Q 007481 336 RAGREGYAVTFVTDNDRSLLKAIAKR 361 (602)
Q Consensus 336 R~g~~g~~i~l~~~~d~~~l~~i~~~ 361 (602)
|+|..|.+++|..+.+.+++..+...
T Consensus 540 RaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 540 RAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred hccCCCceEEEecccHHHHHHHHHhh
Confidence 99999999999999999988877654
No 21
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=5.6e-59 Score=512.32 Aligned_cols=356 Identities=31% Similarity=0.515 Sum_probs=312.8
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCC----CCCCCcEEEEEcC
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP----KRIPAIRVLILTP 77 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~----~~~~~~~vLiL~P 77 (602)
+++|++.++++|..+||..|||+|.++||.++.|+|+|++||||||||++|++|++.++.... ....++++|||+|
T Consensus 125 ~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~P 204 (518)
T PLN00206 125 SCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTP 204 (518)
T ss_pred hCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeC
Confidence 579999999999999999999999999999999999999999999999999999999876421 1125678999999
Q ss_pred hHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccc
Q 007481 78 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 157 (602)
Q Consensus 78 tr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~ 157 (602)
|++||.|+++.+..+....++.+..++||.....+...+..+++|+|+||++|++++.+. .+.++++.+|||||||+|+
T Consensus 205 TreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~-~~~l~~v~~lViDEad~ml 283 (518)
T PLN00206 205 TRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH-DIELDNVSVLVLDEVDCML 283 (518)
T ss_pred CHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC-CccchheeEEEeecHHHHh
Confidence 999999999999999888889999999998888887788889999999999999999875 6789999999999999999
Q ss_pred cCCcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHH
Q 007481 158 ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 237 (602)
Q Consensus 158 ~~gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l 237 (602)
++||...+..++..++ .+|+++||||+++.+..++..++.+++.+.+.........+.+.++.+.. ..+...+..+
T Consensus 284 ~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~---~~k~~~l~~~ 359 (518)
T PLN00206 284 ERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVET---KQKKQKLFDI 359 (518)
T ss_pred hcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccc---hhHHHHHHHH
Confidence 9999999999988885 58999999999999999999999999888776555444445555555442 2233444444
Q ss_pred hhh--cCCCeEEEEeCcHHHHHHHHHHHhh-cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccE
Q 007481 238 CSK--TFTSKVIIFSGTKQAAHRLKILFGL-AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT 314 (602)
Q Consensus 238 ~~~--~~~~kvIIF~~s~~~a~~l~~~L~~-~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~ 314 (602)
+.. ....++||||+++..++.++..|.. .++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|+|++
T Consensus 360 l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~ 439 (518)
T PLN00206 360 LKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQ 439 (518)
T ss_pred HHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCE
Confidence 442 2346899999999999999999975 6899999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHh
Q 007481 315 VINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362 (602)
Q Consensus 315 VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~ 362 (602)
|||||+|.+..+|+||+|||||+|..|.+++|+++++...+..+.+.+
T Consensus 440 VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l 487 (518)
T PLN00206 440 VIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALL 487 (518)
T ss_pred EEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888777776543
No 22
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-60 Score=469.83 Aligned_cols=354 Identities=35% Similarity=0.557 Sum_probs=315.7
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCC---CCCCcEEEEEcChH
Q 007481 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK---RIPAIRVLILTPTR 79 (602)
Q Consensus 3 l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~---~~~~~~vLiL~Ptr 79 (602)
++..+++++.+...||.+|||||.+++|.+|+|.|+++.|.||+|||++|++|.+-++...+. ..+++.+|+|+||+
T Consensus 225 Fq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptr 304 (629)
T KOG0336|consen 225 FQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTR 304 (629)
T ss_pred HhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccH
Confidence 567789999999999999999999999999999999999999999999999999888876543 25678899999999
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccC
Q 007481 80 ELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 159 (602)
Q Consensus 80 ~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~ 159 (602)
+|+.|+.-+..++ .+.+....+++|+.+..++...+..+.+|+|+||++|.++..++ .+++.++.+|||||||+|+++
T Consensus 305 eLalqie~e~~ky-syng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n-~i~l~siTYlVlDEADrMLDM 382 (629)
T KOG0336|consen 305 ELALQIEGEVKKY-SYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDN-VINLASITYLVLDEADRMLDM 382 (629)
T ss_pred HHHHHHHhHHhHh-hhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcC-eeeeeeeEEEEecchhhhhcc
Confidence 9999998888887 45578888899999999999999999999999999999988774 689999999999999999999
Q ss_pred CcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhh
Q 007481 160 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239 (602)
Q Consensus 160 gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~ 239 (602)
||...+..|+-.+.+.+|+++.|||.|+.+..++..++..|+.+.+.............++.+. .+..+..+...++.
T Consensus 383 gFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~--~d~~k~~~~~~f~~ 460 (629)
T KOG0336|consen 383 GFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVT--TDSEKLEIVQFFVA 460 (629)
T ss_pred cccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEec--ccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887665544433333333332 33444455544444
Q ss_pred h-cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEc
Q 007481 240 K-TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINY 318 (602)
Q Consensus 240 ~-~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~ 318 (602)
. ....++||||..+-.|+.|..-|...|+.+-.|||+-.|.+|+..+++|++|++.||||||++++|||+++++||+||
T Consensus 461 ~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~Ny 540 (629)
T KOG0336|consen 461 NMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNY 540 (629)
T ss_pred hcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeecc
Confidence 3 346799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHH
Q 007481 319 ACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360 (602)
Q Consensus 319 d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~ 360 (602)
|+|.+.+.|+||+||+||+|+.|.+++|++.+|..+...+.+
T Consensus 541 DFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ 582 (629)
T KOG0336|consen 541 DFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQ 582 (629)
T ss_pred CCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHH
Confidence 999999999999999999999999999999999998877654
No 23
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.5e-58 Score=500.82 Aligned_cols=362 Identities=37% Similarity=0.617 Sum_probs=322.1
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCC----CCCcEEEEEcC
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR----IPAIRVLILTP 77 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~----~~~~~vLiL~P 77 (602)
+++|++.|+++|.++||..|||+|.++|+.++.|+|+|+.+|||||||++|++|+++.+...... ...+++|||+|
T Consensus 91 ~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~P 170 (475)
T PRK01297 91 DFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAP 170 (475)
T ss_pred HCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeC
Confidence 58999999999999999999999999999999999999999999999999999999998865421 12468999999
Q ss_pred hHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHc-CCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccc
Q 007481 78 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 156 (602)
Q Consensus 78 tr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~-~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l 156 (602)
|++||.|+++.+..+....++.+..++||.+...+...+. ..++|+|+||++|++++.+. ...++++++|||||||++
T Consensus 171 treLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~-~~~l~~l~~lViDEah~l 249 (475)
T PRK01297 171 TRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG-EVHLDMVEVMVLDEADRM 249 (475)
T ss_pred cHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC-CcccccCceEEechHHHH
Confidence 9999999999999999989999999999988776666554 56899999999999988764 567899999999999999
Q ss_pred ccCCcHHHHHHHHHhCCC--CcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHH
Q 007481 157 LELGFSAEIHELVRLCPK--RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL 234 (602)
Q Consensus 157 ~~~gf~~~i~~i~~~~~~--~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l 234 (602)
++++|...+..++..++. ..|++++|||++.++..++..++..|..+.+.........+.+.+..+. ...+...+
T Consensus 250 ~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~k~~~l 326 (475)
T PRK01297 250 LDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVA---GSDKYKLL 326 (475)
T ss_pred HhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEec---chhHHHHH
Confidence 999999999999998865 5799999999999999999999999988877665544455555555443 23455566
Q ss_pred HHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccE
Q 007481 235 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT 314 (602)
Q Consensus 235 ~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~ 314 (602)
..++......++||||+++..++.++..|...|+.+..+||++++.+|.++++.|++|+++|||||+++++|||||++++
T Consensus 327 ~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~ 406 (475)
T PRK01297 327 YNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISH 406 (475)
T ss_pred HHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCE
Confidence 66776666779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcch
Q 007481 315 VINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 367 (602)
Q Consensus 315 VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~~ 367 (602)
||+|++|.|..+|+||+||+||.|..|.+++|++++|...+..+++.++.++.
T Consensus 407 VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~ 459 (475)
T PRK01297 407 VINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKIS 459 (475)
T ss_pred EEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCc
Confidence 99999999999999999999999999999999999998889999888877764
No 24
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-60 Score=460.82 Aligned_cols=359 Identities=33% Similarity=0.536 Sum_probs=334.0
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
++.|.+.|+.++-..||..|+|+|.++||.+|.|+|+++.|..|+|||.+|.+|+++.+..... ..+++|++|||||
T Consensus 89 d~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~---~IQ~~ilVPtrel 165 (459)
T KOG0326|consen 89 DYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKN---VIQAIILVPTREL 165 (459)
T ss_pred HhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcccc---ceeEEEEeecchh
Confidence 6789999999999999999999999999999999999999999999999999999999876543 4579999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCc
Q 007481 82 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF 161 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf 161 (602)
|.|+.+.+..+++++++.+.+.+||.+..+....+....+++|+|||+++|++... ...+++..++|+||||.+++..|
T Consensus 166 ALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~Kg-Va~ls~c~~lV~DEADKlLs~~F 244 (459)
T KOG0326|consen 166 ALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKG-VADLSDCVILVMDEADKLLSVDF 244 (459)
T ss_pred hHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcc-cccchhceEEEechhhhhhchhh
Confidence 99999999999999999999999999988888888889999999999999999874 56799999999999999999999
Q ss_pred HHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhhc
Q 007481 162 SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241 (602)
Q Consensus 162 ~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~ 241 (602)
...+..++..+|+.+|++++|||.|-.+..+...++.+|..+..-.. ..+.+++|.+..+ .+..+...|..++...
T Consensus 245 ~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e-Ltl~GvtQyYafV---~e~qKvhCLntLfskL 320 (459)
T KOG0326|consen 245 QPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE-LTLKGVTQYYAFV---EERQKVHCLNTLFSKL 320 (459)
T ss_pred hhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh-hhhcchhhheeee---chhhhhhhHHHHHHHh
Confidence 99999999999999999999999999999999999999998876443 3556777877776 3566777777777777
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCC
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACP 321 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p 321 (602)
.-...||||+|...++.++..+.++|++|.++|+.|-|+.|..+..+|++|.++.|||||++.||||++.+++|||||+|
T Consensus 321 qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfp 400 (459)
T KOG0326|consen 321 QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFP 400 (459)
T ss_pred cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcchh
Q 007481 322 RDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 368 (602)
Q Consensus 322 ~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~~~ 368 (602)
.++++|+||+||.||.|..|.+|.|++-+|+..+..|++.+|.++..
T Consensus 401 k~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~p 447 (459)
T KOG0326|consen 401 KNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKP 447 (459)
T ss_pred CCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999987764
No 25
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-58 Score=477.53 Aligned_cols=354 Identities=37% Similarity=0.570 Sum_probs=319.0
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCC-------CCCcEEEEEc
Q 007481 4 NLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR-------IPAIRVLILT 76 (602)
Q Consensus 4 ~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~-------~~~~~vLiL~ 76 (602)
.|...+...+...||+.|||+|+.+||.+..|+++++||+||||||.+|++|++..++..... ...+++|||+
T Consensus 80 ~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIla 159 (482)
T KOG0335|consen 80 ILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILA 159 (482)
T ss_pred chhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEe
Confidence 466778888899999999999999999999999999999999999999999999999875321 1358899999
Q ss_pred ChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccc
Q 007481 77 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 156 (602)
Q Consensus 77 Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l 156 (602)
||||||.|++++.+++.-...+.++.++|+.+...+...+..+++|+|+|||+|.+.+... .+.|+++.++||||||+|
T Consensus 160 pTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g-~i~l~~~k~~vLDEADrM 238 (482)
T KOG0335|consen 160 PTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERG-KISLDNCKFLVLDEADRM 238 (482)
T ss_pred CcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcc-eeehhhCcEEEecchHHh
Confidence 9999999999999999988999999999999999999999999999999999999999874 689999999999999999
Q ss_pred cc-CCcHHHHHHHHHhCCC----CcceeeeeccCChhHHHHHHHhcCC-CeEEecCCCCCCCCCceeeeeeechhhhhhH
Q 007481 157 LE-LGFSAEIHELVRLCPK----RRQTMLFSATLTEDVDELIKLSLTK-PLRLSADPSAKRPSTLTEEVVRIRRMREVNQ 230 (602)
Q Consensus 157 ~~-~gf~~~i~~i~~~~~~----~~q~il~SAT~~~~~~~l~~~~l~~-p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k 230 (602)
++ ++|...+.+|+..... ..|+++||||.|.++..++..++.+ .+.+.+........++.|.++++... .+
T Consensus 239 lD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~---~k 315 (482)
T KOG0335|consen 239 LDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEM---EK 315 (482)
T ss_pred hhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecch---hh
Confidence 99 9999999999988754 7899999999999999998888776 67777777777888999999998643 34
Q ss_pred HHHHHHHhhhcC----CC-----eEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC
Q 007481 231 EAVLLSLCSKTF----TS-----KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301 (602)
Q Consensus 231 ~~~l~~l~~~~~----~~-----kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~ 301 (602)
...|+.++.... .+ .++|||.|++.|..+..+|...++++..+||+.++.+|.+.+..|++|.+.+||||+
T Consensus 316 r~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~ 395 (482)
T KOG0335|consen 316 RSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATN 395 (482)
T ss_pred HHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEeh
Confidence 444555544222 23 899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHH
Q 007481 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361 (602)
Q Consensus 302 ~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~ 361 (602)
+++||||||+|+||||||+|.+..+|+||||||||+|..|.++.|++..+....+++.+-
T Consensus 396 VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~ 455 (482)
T KOG0335|consen 396 VAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEI 455 (482)
T ss_pred hhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999998887777776543
No 26
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.3e-59 Score=461.79 Aligned_cols=345 Identities=37% Similarity=0.613 Sum_probs=311.3
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCC-----CCCCCcEEEEEc
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP-----KRIPAIRVLILT 76 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~-----~~~~~~~vLiL~ 76 (602)
+|.++.+||+.|...|+.+|||||.+.||.+|.|+|.|..|-||||||++|.+|++-..+... ....++-.||+|
T Consensus 174 eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiic 253 (610)
T KOG0341|consen 174 EMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIIC 253 (610)
T ss_pred hccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEc
Confidence 688999999999999999999999999999999999999999999999999999876555422 123567789999
Q ss_pred ChHHHHHHHHHHHHHHhhc------CCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEE
Q 007481 77 PTRELAVQVHSMIEKIAQF------TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLIL 150 (602)
Q Consensus 77 Ptr~La~Q~~~~~~~l~~~------~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVl 150 (602)
|+|+||.|.++.+..|+.. +.++++++.||.+..+|...++.+.+|+|+||++|.|.|... .++|+-..++.+
T Consensus 254 PSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK-~~sLd~CRyL~l 332 (610)
T KOG0341|consen 254 PSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKK-IMSLDACRYLTL 332 (610)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHh-hccHHHHHHhhh
Confidence 9999999999999888764 358899999999999999999999999999999999999874 578888999999
Q ss_pred eCccccccCCcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhH
Q 007481 151 DEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ 230 (602)
Q Consensus 151 DEah~l~~~gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k 230 (602)
||||+|.++||.+.+..|+.++...+|+++||||||..+..+++..+.+|+.+.+.......-++.|++-++ ....+
T Consensus 333 DEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyV---kqEaK 409 (610)
T KOG0341|consen 333 DEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYV---KQEAK 409 (610)
T ss_pred hhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHH---Hhhhh
Confidence 999999999999999999999999999999999999999999999999999999876665555555554443 33455
Q ss_pred HHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcC
Q 007481 231 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 310 (602)
Q Consensus 231 ~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip 310 (602)
..+|+..+. ....+|||||..+..++.++++|-..|+.++.+||+-+|++|...++.|+.|+-+||||||+++.|||+|
T Consensus 410 iVylLeCLQ-KT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp 488 (610)
T KOG0341|consen 410 IVYLLECLQ-KTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFP 488 (610)
T ss_pred hhhHHHHhc-cCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCc
Confidence 556665444 3457999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCc
Q 007481 311 GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 351 (602)
Q Consensus 311 ~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d 351 (602)
++.||||||+|...+.|+||+|||||.|+.|.+.+|++...
T Consensus 489 ~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 489 DIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred cchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 99999999999999999999999999999999999999764
No 27
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=5.5e-56 Score=476.85 Aligned_cols=361 Identities=32% Similarity=0.529 Sum_probs=319.5
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+|||++.++++|..+||..|+|+|.++|+.++.|+|+++.||||||||++|++|+++.+... ..++++|||+||++|
T Consensus 32 ~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~---~~~~~~lil~Pt~~L 108 (401)
T PTZ00424 32 ALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD---LNACQALILAPTREL 108 (401)
T ss_pred hCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC---CCCceEEEECCCHHH
Confidence 58999999999999999999999999999999999999999999999999999999887543 235689999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCc
Q 007481 82 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF 161 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf 161 (602)
+.|+++.+..++...++.+..++|+.........+..+++|+|+||++|.+++... .+.++++++|||||||++++.+|
T Consensus 109 ~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~-~~~l~~i~lvViDEah~~~~~~~ 187 (401)
T PTZ00424 109 AQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKR-HLRVDDLKLFILDEADEMLSRGF 187 (401)
T ss_pred HHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhC-CcccccccEEEEecHHHHHhcch
Confidence 99999999999888888999999998887777788888999999999999998864 46789999999999999999999
Q ss_pred HHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhhc
Q 007481 162 SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241 (602)
Q Consensus 162 ~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~ 241 (602)
...+..++..++...|++++|||+++.+..+...++..|..+.+.........+.+.++.+.. ...+...+..++...
T Consensus 188 ~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 265 (401)
T PTZ00424 188 KGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEK--EEWKFDTLCDLYETL 265 (401)
T ss_pred HHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecCh--HHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998888888888877665444444555555554432 223344455555555
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCC
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACP 321 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p 321 (602)
...++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++++||+||+|
T Consensus 266 ~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p 345 (401)
T PTZ00424 266 TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLP 345 (401)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcchh
Q 007481 322 RDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 368 (602)
Q Consensus 322 ~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~~~ 368 (602)
.+...|+||+||+||.|..|.|++|+++.+...+..+++.+...+..
T Consensus 346 ~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~ 392 (401)
T PTZ00424 346 ASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEE 392 (401)
T ss_pred CCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccc
Confidence 99999999999999999999999999999999999998877655543
No 28
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-56 Score=454.03 Aligned_cols=357 Identities=37% Similarity=0.571 Sum_probs=325.2
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCC--CCCCcEEEEEcChH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK--RIPAIRVLILTPTR 79 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~--~~~~~~vLiL~Ptr 79 (602)
++|++..|..++....|.+|||+|.+++|.++.|+|++..|.||||||.+|+.|++-+++..+. ...++-.||||||+
T Consensus 227 h~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTr 306 (731)
T KOG0339|consen 227 HFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTR 306 (731)
T ss_pred hcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccH
Confidence 5789999999999999999999999999999999999999999999999999999999887543 24577899999999
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccC
Q 007481 80 ELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 159 (602)
Q Consensus 80 ~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~ 159 (602)
+||.|++.++++|++..+++++++|||.+.-+|...|..++.||||||+||++++.-. ..++.++.+||||||++|.++
T Consensus 307 ela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmK-atn~~rvS~LV~DEadrmfdm 385 (731)
T KOG0339|consen 307 ELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMK-ATNLSRVSYLVLDEADRMFDM 385 (731)
T ss_pred HHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhh-cccceeeeEEEEechhhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999874 678999999999999999999
Q ss_pred CcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHH-HHh
Q 007481 160 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL-SLC 238 (602)
Q Consensus 160 gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~-~l~ 238 (602)
||...+..|..++.+.+|+++||||++..+..++..++..|+++.......-...++|.+.-+.. +..+...|. .+.
T Consensus 386 Gfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s--~~~Kl~wl~~~L~ 463 (731)
T KOG0339|consen 386 GFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPS--EEKKLNWLLRHLV 463 (731)
T ss_pred ccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccC--cHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999877666666677776655543 334444444 444
Q ss_pred hhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEc
Q 007481 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINY 318 (602)
Q Consensus 239 ~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~ 318 (602)
.-...+++|||+.-+..++.+...|...++++..+||++.|.+|.++|..|+.+...|||+||++++|+||+.+.+||||
T Consensus 464 ~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvny 543 (731)
T KOG0339|consen 464 EFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNY 543 (731)
T ss_pred hhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecc
Confidence 45566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHH
Q 007481 319 ACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361 (602)
Q Consensus 319 d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~ 361 (602)
|+-.+.+.|.||+||+||+|..|.+++|+++.|..+.=.+.+.
T Consensus 544 D~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnn 586 (731)
T KOG0339|consen 544 DFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNN 586 (731)
T ss_pred cccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHH
Confidence 9999999999999999999999999999999997765555443
No 29
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-56 Score=442.77 Aligned_cols=360 Identities=39% Similarity=0.593 Sum_probs=334.2
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
.|||+..+++++..-||.+|||+|++.||.+|+++|++..+-||||||.||++|+++++.... ..+.+++|++||++|
T Consensus 25 smgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s--~~g~RalilsptreL 102 (529)
T KOG0337|consen 25 SMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS--QTGLRALILSPTREL 102 (529)
T ss_pred ccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc--ccccceeeccCcHHH
Confidence 689999999999999999999999999999999999999999999999999999999998776 357799999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCc
Q 007481 82 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF 161 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf 161 (602)
+.|..+.++.+++++++++++++||.+..+++..+..+||||++||++++...-. ..+.|+.+++||+||+|++.++||
T Consensus 103 a~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~ve-m~l~l~sveyVVfdEadrlfemgf 181 (529)
T KOG0337|consen 103 ALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVE-MTLTLSSVEYVVFDEADRLFEMGF 181 (529)
T ss_pred HHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehh-eeccccceeeeeehhhhHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999876655 357899999999999999999999
Q ss_pred HHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhhc
Q 007481 162 SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241 (602)
Q Consensus 162 ~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~ 241 (602)
.+.+.+++..+|...|+++||||+|..+.++++..+.+|+.+..+........+...+..++ ...+..+|..++...
T Consensus 182 qeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~---~a~K~aaLl~il~~~ 258 (529)
T KOG0337|consen 182 QEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVR---KAEKEAALLSILGGR 258 (529)
T ss_pred HHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeec---cHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999987777766666766666664 466777888887654
Q ss_pred C-CCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCC
Q 007481 242 F-TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC 320 (602)
Q Consensus 242 ~-~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~ 320 (602)
. ..+++||+.|+..++.+...|...|+.+..++|.+++.-|..-+.+|+.++..+||.||+++||+|||..+.|||||.
T Consensus 259 ~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~ 338 (529)
T KOG0337|consen 259 IKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDF 338 (529)
T ss_pred ccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccC
Confidence 3 468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcch
Q 007481 321 PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 367 (602)
Q Consensus 321 p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~~ 367 (602)
|.+...|+||+||++|+|+.|++|.++.+.+..++-.+....+..+.
T Consensus 339 p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~ 385 (529)
T KOG0337|consen 339 PPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLI 385 (529)
T ss_pred CCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCcee
Confidence 99999999999999999999999999999999999888877776554
No 30
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.7e-55 Score=429.34 Aligned_cols=362 Identities=31% Similarity=0.485 Sum_probs=322.0
Q ss_pred CCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcCh
Q 007481 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 78 (602)
Q Consensus 1 ~~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g--~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Pt 78 (602)
.+|+|.|+|+++|..|+|..|+.||+.++|.+|.. +|.|..+..|+|||+||.+.+|.++... ...|++++|+||
T Consensus 93 eeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~---~~~PQ~iCLaPt 169 (477)
T KOG0332|consen 93 EELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD---VVVPQCICLAPT 169 (477)
T ss_pred HhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc---ccCCCceeeCch
Confidence 37999999999999999999999999999999985 8999999999999999999999887543 356789999999
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccccc
Q 007481 79 RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 158 (602)
Q Consensus 79 r~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~ 158 (602)
++||.|+-+.+.++.++++++....+-+.... ..-.-..+|+|+||+.+.|++..-..+++..+.++|+||||.|++
T Consensus 170 rELA~Q~~eVv~eMGKf~~ita~yair~sk~~---rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~ 246 (477)
T KOG0332|consen 170 RELAPQTGEVVEEMGKFTELTASYAIRGSKAK---RGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMID 246 (477)
T ss_pred HHHHHHHHHHHHHhcCceeeeEEEEecCcccc---cCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhh
Confidence 99999999999999999998888877765211 111112489999999999999886678899999999999999886
Q ss_pred -CCcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHH
Q 007481 159 -LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 237 (602)
Q Consensus 159 -~gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l 237 (602)
.||.+.-..|...+|...|+++||||....+..++...+.+|..+..........++.|.++.|. .+..+...|..+
T Consensus 247 tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~--~~~~K~~~l~~l 324 (477)
T KOG0332|consen 247 TQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCA--CRDDKYQALVNL 324 (477)
T ss_pred cccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeecc--chhhHHHHHHHH
Confidence 57999999999999999999999999999999999999999988888777777788888888876 356777888877
Q ss_pred hhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEE
Q 007481 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN 317 (602)
Q Consensus 238 ~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~ 317 (602)
.....-+..||||.|++.|.+++..|...|..+..|||+|...+|..++.+|+.|...|||+|++.+||||++.|++|||
T Consensus 325 yg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvN 404 (477)
T KOG0332|consen 325 YGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVN 404 (477)
T ss_pred HhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEe
Confidence 76666689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------ChhhHHHHhhhcccCCCcceEEEEEecC-cHHHHHHHHHHhcCcchhhh
Q 007481 318 YACPR------DLTSYVHRVGRTARAGREGYAVTFVTDN-DRSLLKAIAKRAGSKLKSRI 370 (602)
Q Consensus 318 ~d~p~------s~~~yiQriGRa~R~g~~g~~i~l~~~~-d~~~l~~i~~~~~~~~~~~~ 370 (602)
||+|. +++.|+||+|||||.|+.|.+|.|++.. +..++..|.+.++..++...
T Consensus 405 ydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~ 464 (477)
T KOG0332|consen 405 YDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLD 464 (477)
T ss_pred cCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecC
Confidence 99996 7899999999999999999999999875 56788889988876666443
No 31
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.8e-55 Score=433.06 Aligned_cols=358 Identities=32% Similarity=0.543 Sum_probs=330.9
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+|||+++||+++...||.+|+.+|++||+++..|.|+++.+++|+|||.+|.+++++.+.... ..+++|+++||++|
T Consensus 30 dm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~---ke~qalilaPtreL 106 (397)
T KOG0327|consen 30 DMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSV---KETQALILAPTREL 106 (397)
T ss_pred hcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcch---HHHHHHHhcchHHH
Confidence 799999999999999999999999999999999999999999999999999999999985443 45679999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHH-cCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC
Q 007481 82 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL-RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 160 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l-~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g 160 (602)
+.|++.....+..+.++++..++|+.+...+...+ ...+.|+|+||+++.+.+... .+....+.++|+||||.|+..|
T Consensus 107 a~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDEaDEmLs~g 185 (397)
T KOG0327|consen 107 AQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDEADEMLSRG 185 (397)
T ss_pred HHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-cccccceeEEeecchHhhhccc
Confidence 99999999999999999999999998877555444 445899999999999999886 6788889999999999999999
Q ss_pred cHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhh
Q 007481 161 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240 (602)
Q Consensus 161 f~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~ 240 (602)
|.+.+..|..++|+..|++++|||+|.++.++.+.++..|+.+.+.....+...+.+.++.+.... +...|..+.+
T Consensus 186 fkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~---k~~~l~dl~~- 261 (397)
T KOG0327|consen 186 FKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE---KLDTLCDLYR- 261 (397)
T ss_pred hHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc---cccHHHHHHH-
Confidence 999999999999999999999999999999999999999999999887777888889888876533 6666666666
Q ss_pred cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCC
Q 007481 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC 320 (602)
Q Consensus 241 ~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~ 320 (602)
.-...+|||+|+..+..+...|...++.+..+||+|.+.+|..++..|+.|...|||+|+++++|+|+..++.||||++
T Consensus 262 -~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydl 340 (397)
T KOG0327|consen 262 -RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDL 340 (397)
T ss_pred -hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeecc
Confidence 4568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcchh
Q 007481 321 PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 368 (602)
Q Consensus 321 p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~~~ 368 (602)
|.+..+|+||+||+||.|++|.++.++.+.|...++.+++.+...+..
T Consensus 341 P~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e 388 (397)
T KOG0327|consen 341 PARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEE 388 (397)
T ss_pred ccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCccee
Confidence 999999999999999999999999999999999999999888766654
No 32
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.7e-54 Score=436.56 Aligned_cols=354 Identities=35% Similarity=0.562 Sum_probs=304.7
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHhc---------CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEc
Q 007481 6 SRPLLRACEALGYSKPTPIQAACIPLALT---------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 76 (602)
Q Consensus 6 ~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~---------g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~ 76 (602)
+..+.++|..+++++..|+|..++|++|. ++|++|.||||||||++|.|||++.+..++- +..|+|||+
T Consensus 145 ea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v--~~LRavViv 222 (620)
T KOG0350|consen 145 EATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPV--KRLRAVVIV 222 (620)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCc--cceEEEEEe
Confidence 44566779999999999999999999974 5899999999999999999999999988764 347899999
Q ss_pred ChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCC-C----cEEEECcHHHHHHHHccCCCCCCCcceEEEe
Q 007481 77 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM-P----DIVVATPGRMIDHLRNSMSVDLDDLAVLILD 151 (602)
Q Consensus 77 Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~-~----~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlD 151 (602)
||++|+.|++..|..|+...++.||.+.|..+.......|... + ||+|+|||||.||+.+..+++|.++.++|||
T Consensus 223 Ptr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVID 302 (620)
T KOG0350|consen 223 PTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVID 302 (620)
T ss_pred eHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEec
Confidence 9999999999999999999999999999999887777777554 3 8999999999999999999999999999999
Q ss_pred CccccccCCcHHHHHHHHHhCC----------------------------------CCcceeeeeccCChhHHHHHHHhc
Q 007481 152 EADRLLELGFSAEIHELVRLCP----------------------------------KRRQTMLFSATLTEDVDELIKLSL 197 (602)
Q Consensus 152 Eah~l~~~gf~~~i~~i~~~~~----------------------------------~~~q~il~SAT~~~~~~~l~~~~l 197 (602)
|||+|++..|..++..++.++. +..+.+.+|||++.+...+..+.+
T Consensus 303 EADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l 382 (620)
T KOG0350|consen 303 EADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTL 382 (620)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhc
Confidence 9999999888887777665543 122468899999999999999999
Q ss_pred CCCeEEecC----CCCCCCCCceeeeeeechhhhhhHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHh----hcCCc
Q 007481 198 TKPLRLSAD----PSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFG----LAALK 269 (602)
Q Consensus 198 ~~p~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~----~~g~~ 269 (602)
+.|-.+.+. ..+..|..+.+..+.+.. ..+...+..++......++|+|+++...+.+++..|. ....+
T Consensus 383 ~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~---~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~ 459 (620)
T KOG0350|consen 383 HIPRLFHVSKPLIGRYSLPSSLSHRLVVTEP---KFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFK 459 (620)
T ss_pred CCCceEEeecccceeeecChhhhhceeeccc---ccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccch
Confidence 999555544 334455666665555432 2344556667777777899999999999999998887 33567
Q ss_pred eeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEec
Q 007481 270 AAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 349 (602)
Q Consensus 270 ~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~ 349 (602)
+..+.|+++...|...++.|..|++++|||+|+++||+|+.+++.|||||+|.+..+|+||+|||||+|+.|.||++.+.
T Consensus 460 ~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~ 539 (620)
T KOG0350|consen 460 VSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDK 539 (620)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeecc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhcC
Q 007481 350 NDRSLLKAIAKRAGS 364 (602)
Q Consensus 350 ~d~~~l~~i~~~~~~ 364 (602)
.+...+..+.+..+.
T Consensus 540 ~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 540 HEKRLFSKLLKKTNL 554 (620)
T ss_pred ccchHHHHHHHHhcc
Confidence 988887777766543
No 33
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-53 Score=468.96 Aligned_cols=367 Identities=38% Similarity=0.550 Sum_probs=325.0
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCC--CCCCcEEEEEcChH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK--RIPAIRVLILTPTR 79 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~--~~~~~~vLiL~Ptr 79 (602)
+.||+.-|+.-+..+||..|||||.+|||+++.|+|||+.|-||||||++|++|++.++...+. ...+|-+||++||+
T Consensus 369 q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtr 448 (997)
T KOG0334|consen 369 QCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTR 448 (997)
T ss_pred hCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCH
Confidence 4689999999999999999999999999999999999999999999999999999988776443 24588899999999
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHcc--CCCCCCCcceEEEeCccccc
Q 007481 80 ELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS--MSVDLDDLAVLILDEADRLL 157 (602)
Q Consensus 80 ~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~--~~~~l~~l~llVlDEah~l~ 157 (602)
+|+.|++++++.|+..+++.+++++|+.....+...+..++.|+|||||+++|.+-.+ .-.++..+.++|+||||+|+
T Consensus 449 ela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmf 528 (997)
T KOG0334|consen 449 ELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMF 528 (997)
T ss_pred HHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhh
Confidence 9999999999999999999999999999999999999999999999999999988643 22345666699999999999
Q ss_pred cCCcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHH
Q 007481 158 ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 237 (602)
Q Consensus 158 ~~gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l 237 (602)
++||...+..|+..+++.+|+++||||.|..+..++...++.|+.+.+.........+.+.+..+.. +..+...|..+
T Consensus 529 dmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~--e~eKf~kL~eL 606 (997)
T KOG0334|consen 529 DMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAI--ENEKFLKLLEL 606 (997)
T ss_pred eeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecC--chHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998887665555666666555541 33444445544
Q ss_pred hh-hcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEE
Q 007481 238 CS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI 316 (602)
Q Consensus 238 ~~-~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI 316 (602)
+. ....+++||||.....|..+..-|...|+.|..|||+.++.+|..++++|++|.+++||+|+++++|||++.+.+||
T Consensus 607 l~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvv 686 (997)
T KOG0334|consen 607 LGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVV 686 (997)
T ss_pred HHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEE
Confidence 43 44478999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcchhhhhh
Q 007481 317 NYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVA 372 (602)
Q Consensus 317 ~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~ 372 (602)
|||+|.....|+||+|||||+|+.|.|++|+.+.+..+.-.|.+.+ .+....++
T Consensus 687 nyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al--~~~~~~~P 740 (997)
T KOG0334|consen 687 NYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL--ELSKQPVP 740 (997)
T ss_pred EcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH--HhccCCCc
Confidence 9999999999999999999999999999999997777777777765 33344444
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.4e-51 Score=465.72 Aligned_cols=367 Identities=19% Similarity=0.230 Sum_probs=285.2
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHH
Q 007481 4 NLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 83 (602)
Q Consensus 4 ~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~ 83 (602)
.|++.|.++|..+||..|||+|.++||.+++|+|+++.+|||||||++|++|+++.+... +++++|||+||++|+.
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~----~~~~aL~l~PtraLa~ 95 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD----PRATALYLAPTKALAA 95 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC----CCcEEEEEcChHHHHH
Confidence 589999999999999999999999999999999999999999999999999999998754 3568999999999999
Q ss_pred HHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHcc-C--CCCCCCcceEEEeCccccccCC
Q 007481 84 QVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS-M--SVDLDDLAVLILDEADRLLELG 160 (602)
Q Consensus 84 Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~-~--~~~l~~l~llVlDEah~l~~~g 160 (602)
|+.+.+..+. ..++++..+.|+.+.. +...+...++|+|+||++|...+... . ...++++++|||||||.+.+.
T Consensus 96 q~~~~l~~l~-~~~i~v~~~~Gdt~~~-~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~- 172 (742)
T TIGR03817 96 DQLRAVRELT-LRGVRPATYDGDTPTE-ERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGV- 172 (742)
T ss_pred HHHHHHHHhc-cCCeEEEEEeCCCCHH-HHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCc-
Confidence 9999999987 5578888888887654 44566777999999999987543211 0 113788999999999999763
Q ss_pred cHHHHHHHH-------HhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeech---------
Q 007481 161 FSAEIHELV-------RLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR--------- 224 (602)
Q Consensus 161 f~~~i~~i~-------~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~--------- 224 (602)
|...+..++ ...+..+|++++|||+++... ++..++..|+.+. +... .+....+..+....
T Consensus 173 fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i-~~~~-~~~~~~~~~~~~p~~~~~~~~~~ 249 (742)
T TIGR03817 173 FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAV-TEDG-SPRGARTVALWEPPLTELTGENG 249 (742)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEE-CCCC-CCcCceEEEEecCCccccccccc
Confidence 655544433 344667899999999997754 5666667775542 2221 11111221111111
Q ss_pred -----hhhhhHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhc--------CCceeeccCCCCHHHHHHHHHHHhc
Q 007481 225 -----MREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA--------ALKAAELHGNLTQAQRLEALELFRK 291 (602)
Q Consensus 225 -----~~~~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~--------g~~~~~lhg~~~~~eR~~il~~F~~ 291 (602)
.........+..++.. +.++||||+|++.++.++..|... +..+..+||++++.+|..+++.|++
T Consensus 250 ~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~ 327 (742)
T TIGR03817 250 APVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRD 327 (742)
T ss_pred cccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHc
Confidence 0112233445445443 579999999999999999887653 5678899999999999999999999
Q ss_pred CCceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEec--CcHHHHHHHHHHhcCcchhh
Q 007481 292 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD--NDRSLLKAIAKRAGSKLKSR 369 (602)
Q Consensus 292 g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~--~d~~~l~~i~~~~~~~~~~~ 369 (602)
|++++||||+++++||||+++++||||++|.+..+|+||+|||||.|+.|.+++++.. .|...+..+.+.+...+...
T Consensus 328 G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~~ 407 (742)
T TIGR03817 328 GELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEAT 407 (742)
T ss_pred CCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999874 45566666666666666655
Q ss_pred hhhhhhhHHHHHH
Q 007481 370 IVAEQSITKWSKI 382 (602)
Q Consensus 370 ~~~~~~~~~~~~~ 382 (602)
.++..+...+..+
T Consensus 408 ~~~~~n~~il~~h 420 (742)
T TIGR03817 408 VFDPDNPYVLGPH 420 (742)
T ss_pred eeCCCcHHHHHHH
Confidence 5544443333333
No 35
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.7e-50 Score=417.02 Aligned_cols=357 Identities=35% Similarity=0.499 Sum_probs=309.8
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCC--CCCCCcEEEEEcChHH
Q 007481 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP--KRIPAIRVLILTPTRE 80 (602)
Q Consensus 3 l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~--~~~~~~~vLiL~Ptr~ 80 (602)
...+..++..+..+||..|+|+|.+|||.++.+++++.|||||||||++|.+|++.+|.... +...+.+++||.||++
T Consensus 141 ~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptre 220 (593)
T KOG0344|consen 141 YSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRE 220 (593)
T ss_pred hhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHH
Confidence 45678899999999999999999999999999999999999999999999999999987643 2246789999999999
Q ss_pred HHHHHHHHHHHHh--hcCCceEEEEECCCCHHH-HHHHHcCCCcEEEECcHHHHHHHHcc-CCCCCCCcceEEEeCcccc
Q 007481 81 LAVQVHSMIEKIA--QFTDIRCCLVVGGLSTKM-QETALRSMPDIVVATPGRMIDHLRNS-MSVDLDDLAVLILDEADRL 156 (602)
Q Consensus 81 La~Q~~~~~~~l~--~~~~i~v~~~~g~~~~~~-~~~~l~~~~~IvI~Tp~~L~~~l~~~-~~~~l~~l~llVlDEah~l 156 (602)
||.|++..+..|. ..+++.+..+........ ........++|+|+||-++..++... ..++++.+.++|+||||++
T Consensus 221 La~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~l 300 (593)
T KOG0344|consen 221 LAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLL 300 (593)
T ss_pred HHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhh
Confidence 9999999999998 555555555444322211 11122344699999999999998764 2368999999999999999
Q ss_pred ccC-CcHHHHHHHHHhCC-CCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHH
Q 007481 157 LEL-GFSAEIHELVRLCP-KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL 234 (602)
Q Consensus 157 ~~~-gf~~~i~~i~~~~~-~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l 234 (602)
.+. +|..++..|+..|. +...+-+||||++.++.+++......++.+.+.........+.|..+.+. .+..+...+
T Consensus 301 fe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~g--se~~K~lA~ 378 (593)
T KOG0344|consen 301 FEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCG--SEKGKLLAL 378 (593)
T ss_pred hChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeee--cchhHHHHH
Confidence 998 89999999998875 45677899999999999999999999999888766555667777777775 345667777
Q ss_pred HHHhhhcCCCeEEEEeCcHHHHHHHHHHH-hhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCcc
Q 007481 235 LSLCSKTFTSKVIIFSGTKQAAHRLKILF-GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQ 313 (602)
Q Consensus 235 ~~l~~~~~~~kvIIF~~s~~~a~~l~~~L-~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~ 313 (602)
..++......++|||+.+.+.|..|...| ...++.+..+||..++.+|.+++++|+.|++.|||||++++||+|+.+++
T Consensus 379 rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn 458 (593)
T KOG0344|consen 379 RQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVN 458 (593)
T ss_pred HHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcc
Confidence 78888888999999999999999999999 67789999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHH
Q 007481 314 TVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361 (602)
Q Consensus 314 ~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~ 361 (602)
+|||||.|.+..+|+||+||+||+|+.|.+|+|+++.|...++.+.+.
T Consensus 459 ~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~ 506 (593)
T KOG0344|consen 459 LVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEV 506 (593)
T ss_pred eEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHH
Confidence 999999999999999999999999999999999999999999888765
No 36
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=3e-50 Score=418.52 Aligned_cols=346 Identities=30% Similarity=0.477 Sum_probs=311.2
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+|-|.++++.+|...+|..||++|..|||.++.+-|+||.|..|+|||++|.+.+++.+..+. ..++.+||+||||+
T Consensus 29 ~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~---~~~q~~Iv~PTREi 105 (980)
T KOG4284|consen 29 QLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRS---SHIQKVIVTPTREI 105 (980)
T ss_pred HHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCccc---CcceeEEEecchhh
Confidence 466889999999999999999999999999999999999999999999999999998887654 45689999999999
Q ss_pred HHHHHHHHHHHhh-cCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccccc-C
Q 007481 82 AVQVHSMIEKIAQ-FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-L 159 (602)
Q Consensus 82 a~Q~~~~~~~l~~-~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~-~ 159 (602)
|.|+.+.+..++. +.+.+|.+++||.........+ +.++|+|+|||++..++... .++++.++++||||||.+++ .
T Consensus 106 aVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl-k~~rIvIGtPGRi~qL~el~-~~n~s~vrlfVLDEADkL~~t~ 183 (980)
T KOG4284|consen 106 AVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL-KQTRIVIGTPGRIAQLVELG-AMNMSHVRLFVLDEADKLMDTE 183 (980)
T ss_pred hhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh-hhceEEecCchHHHHHHHhc-CCCccceeEEEeccHHhhhchh
Confidence 9999999999987 4699999999998776554444 45689999999999998875 68899999999999999998 4
Q ss_pred CcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhh-----hhHHHHH
Q 007481 160 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMRE-----VNQEAVL 234 (602)
Q Consensus 160 gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~k~~~l 234 (602)
.|.+.+..|+..+|..+|++.||||-|..++.++..++.+|..+.........-++.|.++.+..... ..+...|
T Consensus 184 sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L 263 (980)
T KOG4284|consen 184 SFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKL 263 (980)
T ss_pred hHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999988887777788887766543321 1244556
Q ss_pred HHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccE
Q 007481 235 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT 314 (602)
Q Consensus 235 ~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~ 314 (602)
-.++...+-...||||+....|+-++.+|...|++|..+.|.|+|.+|..+++.++.=.++|||+||+-+||||-+++++
T Consensus 264 ~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNL 343 (980)
T KOG4284|consen 264 THVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNL 343 (980)
T ss_pred HHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccce
Confidence 66677777778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcH
Q 007481 315 VINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 352 (602)
Q Consensus 315 VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~ 352 (602)
|||.|+|.+...|.||||||||.|..|.+++|+.....
T Consensus 344 VVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 344 VVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred EEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 99999999999999999999999999999999887644
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.3e-47 Score=432.46 Aligned_cols=338 Identities=21% Similarity=0.268 Sum_probs=260.6
Q ss_pred CCCCHHHHHHH-HHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 3 LNLSRPLLRAC-EALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 3 l~L~~~ll~~l-~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
++.+..+...+ ..+||..|+|+|.++|+.++.|+|+++.+|||+|||++|++|++.. +..+|||+|+++|
T Consensus 442 fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~---------~GiTLVISPLiSL 512 (1195)
T PLN03137 442 FPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC---------PGITLVISPLVSL 512 (1195)
T ss_pred CCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---------CCcEEEEeCHHHH
Confidence 34444555555 4589999999999999999999999999999999999999999853 2359999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHc------CCCcEEEECcHHHHH--HHHcc-CCC-CCCCcceEEEe
Q 007481 82 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR------SMPDIVVATPGRMID--HLRNS-MSV-DLDDLAVLILD 151 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~------~~~~IvI~Tp~~L~~--~l~~~-~~~-~l~~l~llVlD 151 (602)
+.++...+.. .++.+..+.++.....+...+. ..++|+|+||++|.. .+.+. ..+ ....+.+||||
T Consensus 513 mqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVID 588 (1195)
T PLN03137 513 IQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVID 588 (1195)
T ss_pred HHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccC
Confidence 8754444433 3788999999988776655443 568999999999862 22221 111 23457899999
Q ss_pred CccccccCC--cHHHHHHH--HHhCCCCcceeeeeccCChhHHHHHHHhcC--CCeEEecCCCCCCCCCceeeeeeechh
Q 007481 152 EADRLLELG--FSAEIHEL--VRLCPKRRQTMLFSATLTEDVDELIKLSLT--KPLRLSADPSAKRPSTLTEEVVRIRRM 225 (602)
Q Consensus 152 Eah~l~~~g--f~~~i~~i--~~~~~~~~q~il~SAT~~~~~~~l~~~~l~--~p~~~~~~~~~~~~~~l~~~~~~~~~~ 225 (602)
|||++++|| |+..+..+ +....+..++++||||+++.+...+...+. .++.+. ....++ ++...++. .
T Consensus 589 EAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr--~Sf~Rp-NL~y~Vv~---k 662 (1195)
T PLN03137 589 EAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFR--QSFNRP-NLWYSVVP---K 662 (1195)
T ss_pred cchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee--cccCcc-ceEEEEec---c
Confidence 999999998 77766553 333334678999999999988875544433 333322 222232 33222221 1
Q ss_pred hhhhHHHHHHHHhh-hcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccc
Q 007481 226 REVNQEAVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 304 (602)
Q Consensus 226 ~~~~k~~~l~~l~~-~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~ 304 (602)
.. .....+..++. ...+...||||.|++.++.++..|...|+.+..+||+|++.+|..+++.|..|+++|||||++++
T Consensus 663 ~k-k~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFG 741 (1195)
T PLN03137 663 TK-KCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFG 741 (1195)
T ss_pred ch-hHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhh
Confidence 11 11122333333 33466899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHH
Q 007481 305 RGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360 (602)
Q Consensus 305 ~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~ 360 (602)
+|||+|+|++||||++|.|.+.|+||+|||||.|..|.|++|++..|...++.+..
T Consensus 742 MGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 742 MGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred cCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999988777776654
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.9e-48 Score=422.36 Aligned_cols=327 Identities=21% Similarity=0.290 Sum_probs=255.6
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHh
Q 007481 14 EALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 93 (602)
Q Consensus 14 ~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~ 93 (602)
..+||..|+|+|.++|+.++.|+|+++.+|||||||++|++|++.. +..+|||+|+++|+.|+...+..+
T Consensus 5 ~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~---------~~~~lVi~P~~~L~~dq~~~l~~~- 74 (470)
T TIGR00614 5 TVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS---------DGITLVISPLISLMEDQVLQLKAS- 74 (470)
T ss_pred hhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc---------CCcEEEEecHHHHHHHHHHHHHHc-
Confidence 4689999999999999999999999999999999999999998742 235899999999999988887753
Q ss_pred hcCCceEEEEECCCCHHHHHHH----HcCCCcEEEECcHHHHHHHHccCCC-CCCCcceEEEeCccccccCC--cHHHHH
Q 007481 94 QFTDIRCCLVVGGLSTKMQETA----LRSMPDIVVATPGRMIDHLRNSMSV-DLDDLAVLILDEADRLLELG--FSAEIH 166 (602)
Q Consensus 94 ~~~~i~v~~~~g~~~~~~~~~~----l~~~~~IvI~Tp~~L~~~l~~~~~~-~l~~l~llVlDEah~l~~~g--f~~~i~ 166 (602)
++.++.+.++......... ..+.++|+++||+++.....-...+ ....+++|||||||++.+|| |+..+.
T Consensus 75 ---gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~ 151 (470)
T TIGR00614 75 ---GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYK 151 (470)
T ss_pred ---CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHH
Confidence 7788888887765533222 3455899999999975422100011 45778999999999999987 666554
Q ss_pred HH---HHhCCCCcceeeeeccCChhHHHHHHHh--cCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhh-h
Q 007481 167 EL---VRLCPKRRQTMLFSATLTEDVDELIKLS--LTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS-K 240 (602)
Q Consensus 167 ~i---~~~~~~~~q~il~SAT~~~~~~~l~~~~--l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~-~ 240 (602)
.+ ...+ +..+++++|||+++.+...+... +..|..+.... .+ +++...+. .... .....+..++. .
T Consensus 152 ~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~--~r-~nl~~~v~---~~~~-~~~~~l~~~l~~~ 223 (470)
T TIGR00614 152 ALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSF--DR-PNLYYEVR---RKTP-KILEDLLRFIRKE 223 (470)
T ss_pred HHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCC--CC-CCcEEEEE---eCCc-cHHHHHHHHHHHh
Confidence 44 3344 46789999999998876544333 44555443321 12 22222221 1111 12222333333 3
Q ss_pred cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCC
Q 007481 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC 320 (602)
Q Consensus 241 ~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~ 320 (602)
..+..+||||+|++.++.++..|...|+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||||++
T Consensus 224 ~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~ 303 (470)
T TIGR00614 224 FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSL 303 (470)
T ss_pred cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCC
Confidence 44556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHH
Q 007481 321 PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361 (602)
Q Consensus 321 p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~ 361 (602)
|.|...|+||+||+||.|..|.+++|+++.|...++.+...
T Consensus 304 P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 304 PKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLME 344 (470)
T ss_pred CCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHhc
Confidence 99999999999999999999999999999998877776543
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=5.1e-46 Score=416.22 Aligned_cols=335 Identities=21% Similarity=0.285 Sum_probs=261.4
Q ss_pred CCCCHHHHHHHH-HCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 3 LNLSRPLLRACE-ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 3 l~L~~~ll~~l~-~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
++++......|. .+||..|+|+|+++|+.++.|+|+++.+|||+|||++|++|++.. ...+|||+|+++|
T Consensus 7 ~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---------~g~tlVisPl~sL 77 (607)
T PRK11057 7 LNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---------DGLTLVVSPLISL 77 (607)
T ss_pred CCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---------CCCEEEEecHHHH
Confidence 455555666664 479999999999999999999999999999999999999999843 2258999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHH----HcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccc
Q 007481 82 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA----LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 157 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~----l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~ 157 (602)
+.|+.+.+..+ ++.+..+.++.+....... ..+..+++++||++|....... .+....+++|||||||++.
T Consensus 78 ~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~-~l~~~~l~~iVIDEaH~i~ 152 (607)
T PRK11057 78 MKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLE-HLAHWNPALLAVDEAHCIS 152 (607)
T ss_pred HHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHH-HHhhCCCCEEEEeCccccc
Confidence 99998888764 6777777777665543322 2355789999999987421111 2334568899999999999
Q ss_pred cCC--cHHHHHHH---HHhCCCCcceeeeeccCChhHHHHHH--HhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhH
Q 007481 158 ELG--FSAEIHEL---VRLCPKRRQTMLFSATLTEDVDELIK--LSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ 230 (602)
Q Consensus 158 ~~g--f~~~i~~i---~~~~~~~~q~il~SAT~~~~~~~l~~--~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k 230 (602)
+|| |+..+..+ ...+ +..+++++|||+++.+...+. +.+..|...... ..+ +++...++. ....
T Consensus 153 ~~G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~--~~r-~nl~~~v~~-----~~~~ 223 (607)
T PRK11057 153 QWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS--FDR-PNIRYTLVE-----KFKP 223 (607)
T ss_pred cccCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECC--CCC-Ccceeeeee-----ccch
Confidence 987 55554433 3444 467899999999987765432 234555544321 112 222222111 1122
Q ss_pred HHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcC
Q 007481 231 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 310 (602)
Q Consensus 231 ~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip 310 (602)
...+..++....+.++||||+|++.++.++..|...|+.+..+||+|++.+|..+++.|+.|+++|||||+++++|||+|
T Consensus 224 ~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip 303 (607)
T PRK11057 224 LDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKP 303 (607)
T ss_pred HHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCC
Confidence 23344455556678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHH
Q 007481 311 GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 360 (602)
Q Consensus 311 ~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~ 360 (602)
+|++|||||+|.|..+|+||+|||||.|..|.+++|+++.|...++.+..
T Consensus 304 ~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~ 353 (607)
T PRK11057 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (607)
T ss_pred CcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998777666543
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=5e-45 Score=409.05 Aligned_cols=324 Identities=24% Similarity=0.334 Sum_probs=259.3
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 15 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 15 ~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
.+||+.|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. +..++||+|+++|+.|+...+..+
T Consensus 8 ~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~---------~g~~lVisPl~sL~~dq~~~l~~~-- 76 (591)
T TIGR01389 8 TFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL---------KGLTVVISPLISLMKDQVDQLRAA-- 76 (591)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc---------CCcEEEEcCCHHHHHHHHHHHHHc--
Confidence 589999999999999999999999999999999999999999742 225899999999999988888764
Q ss_pred cCCceEEEEECCCCHHHHHHH----HcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC--cHHHHHHH
Q 007481 95 FTDIRCCLVVGGLSTKMQETA----LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG--FSAEIHEL 168 (602)
Q Consensus 95 ~~~i~v~~~~g~~~~~~~~~~----l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g--f~~~i~~i 168 (602)
++.+..+.++.+....... ..+..+|+++||++|....... .+....+++|||||||++.+|| |+..+..+
T Consensus 77 --gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~-~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l 153 (591)
T TIGR01389 77 --GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLN-MLQRIPIALVAVDEAHCVSQWGHDFRPEYQRL 153 (591)
T ss_pred --CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHH-HHhcCCCCEEEEeCCcccccccCccHHHHHHH
Confidence 6788888888876544332 3466899999999986432221 2345678999999999999987 66555444
Q ss_pred ---HHhCCCCcceeeeeccCChhHHHHHHHhcC--CCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhhcCC
Q 007481 169 ---VRLCPKRRQTMLFSATLTEDVDELIKLSLT--KPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFT 243 (602)
Q Consensus 169 ---~~~~~~~~q~il~SAT~~~~~~~l~~~~l~--~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~ 243 (602)
...++.. +++++|||+++.+...+...+. .+..+.. ...+ +++...+.. .......+..++....+
T Consensus 154 ~~l~~~~~~~-~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~--~~~r-~nl~~~v~~-----~~~~~~~l~~~l~~~~~ 224 (591)
T TIGR01389 154 GSLAERFPQV-PRIALTATADAETRQDIRELLRLADANEFIT--SFDR-PNLRFSVVK-----KNNKQKFLLDYLKKHRG 224 (591)
T ss_pred HHHHHhCCCC-CEEEEEeCCCHHHHHHHHHHcCCCCCCeEec--CCCC-CCcEEEEEe-----CCCHHHHHHHHHHhcCC
Confidence 4445544 4999999999887765554443 4433321 2222 223222221 12233445555555557
Q ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCCCC
Q 007481 244 SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD 323 (602)
Q Consensus 244 ~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s 323 (602)
.++||||+|++.++.++..|...|+.+..+||+|+..+|..+++.|.+|+++|||||+++++|||+|++++||||++|.|
T Consensus 225 ~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s 304 (591)
T TIGR01389 225 QSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGN 304 (591)
T ss_pred CCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHH
Q 007481 324 LTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361 (602)
Q Consensus 324 ~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~ 361 (602)
...|+|++||+||.|..|.+++++++.|...++.+.+.
T Consensus 305 ~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i~~ 342 (591)
T TIGR01389 305 LESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRIEQ 342 (591)
T ss_pred HHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHHhc
Confidence 99999999999999999999999999998877776543
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.1e-44 Score=419.12 Aligned_cols=339 Identities=22% Similarity=0.296 Sum_probs=249.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCC---CCCcEEEEEcChHHH
Q 007481 5 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR---IPAIRVLILTPTREL 81 (602)
Q Consensus 5 L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~---~~~~~vLiL~Ptr~L 81 (602)
|++.+.+.+.. +|..|||+|.++||.++.|+|++++||||||||++|.+|++..+...... ..++++|||+||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56667777655 89999999999999999999999999999999999999999998753211 246789999999999
Q ss_pred HHHHHHHHHH-------Hh----hc-CCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCC-CCCCCcceE
Q 007481 82 AVQVHSMIEK-------IA----QF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS-VDLDDLAVL 148 (602)
Q Consensus 82 a~Q~~~~~~~-------l~----~~-~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~-~~l~~l~ll 148 (602)
+.|+++.+.. ++ .. .++++.+.+|+.+.......+...++|+||||++|..++.+... ..+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999876552 22 12 27788999999988877777888999999999999887754321 147889999
Q ss_pred EEeCccccccCCcHHH----HHHHHHhCCCCcceeeeeccCChhHHHHHHHhc-------CCCeEEecCCCCCCCCCcee
Q 007481 149 ILDEADRLLELGFSAE----IHELVRLCPKRRQTMLFSATLTEDVDELIKLSL-------TKPLRLSADPSAKRPSTLTE 217 (602)
Q Consensus 149 VlDEah~l~~~gf~~~----i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l-------~~p~~~~~~~~~~~~~~l~~ 217 (602)
||||||.+.+..+... +..+....+...|++++|||+++. .++..... ..++.+. .........+..
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv-~~~~~k~~~i~v 254 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIV-DARFVKPFDIKV 254 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEE-ccCCCccceEEE
Confidence 9999999997654433 344444555678999999999752 33332221 1122221 111111111100
Q ss_pred e-----eeeechh-hhhhHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhc------CCceeeccCCCCHHHHHHH
Q 007481 218 E-----VVRIRRM-REVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA------ALKAAELHGNLTQAQRLEA 285 (602)
Q Consensus 218 ~-----~~~~~~~-~~~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~------g~~~~~lhg~~~~~eR~~i 285 (602)
. +...... ........+..++. .+.++||||+|+..|+.++..|... +..+..+||++++.+|..+
T Consensus 255 ~~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~v 332 (876)
T PRK13767 255 ISPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEV 332 (876)
T ss_pred eccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHH
Confidence 0 0000000 00011122222222 2568999999999999999998762 4679999999999999999
Q ss_pred HHHHhcCCceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccC-CCcceEEEEEe
Q 007481 286 LELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA-GREGYAVTFVT 348 (602)
Q Consensus 286 l~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~-g~~g~~i~l~~ 348 (602)
++.|++|.++|||||+++++|||+|++++||+|+.|.+...|+||+||+||. |..+.+++++.
T Consensus 333 e~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 333 EEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred HHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 9999999999999999999999999999999999999999999999999986 43344444443
No 42
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=9.6e-45 Score=415.56 Aligned_cols=331 Identities=24% Similarity=0.314 Sum_probs=255.8
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPL-ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 80 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~-~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~ 80 (602)
+|+|++++++++...||.+|+|+|.+|++. ++.|+|++++||||||||++|.+|++..+.. +.++|||+|+++
T Consensus 5 ~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~------~~kal~i~P~ra 78 (737)
T PRK02362 5 ELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR------GGKALYIVPLRA 78 (737)
T ss_pred hcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc------CCcEEEEeChHH
Confidence 689999999999999999999999999998 6789999999999999999999999998852 347999999999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC
Q 007481 81 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 160 (602)
Q Consensus 81 La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g 160 (602)
||.|+++.+..+.. .+++++.++|+...... ....++|+|+||+++..++++. ...+.++++|||||+|.+.+.+
T Consensus 79 La~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~-~~~l~~v~lvViDE~H~l~d~~ 153 (737)
T PRK02362 79 LASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNG-APWLDDITCVVVDEVHLIDSAN 153 (737)
T ss_pred HHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcC-hhhhhhcCEEEEECccccCCCc
Confidence 99999999998754 48899999998764332 2356899999999999988864 3447889999999999999887
Q ss_pred cHHHHHHHHH---hCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeee------------eechh
Q 007481 161 FSAEIHELVR---LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV------------RIRRM 225 (602)
Q Consensus 161 f~~~i~~i~~---~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~------------~~~~~ 225 (602)
+...+..++. ..+...|++++|||+++. .++....-...+ ....+|..+...+. .+...
T Consensus 154 rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~wl~~~~~-----~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~ 227 (737)
T PRK02362 154 RGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADWLDAELV-----DSEWRPIDLREGVFYGGAIHFDDSQREVEVP 227 (737)
T ss_pred chHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHHhCCCcc-----cCCCCCCCCeeeEecCCeeccccccccCCCc
Confidence 7777766644 345678999999999752 333332211111 01112211211110 00000
Q ss_pred hhhhHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhc------------------------------------CCc
Q 007481 226 REVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA------------------------------------ALK 269 (602)
Q Consensus 226 ~~~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~------------------------------------g~~ 269 (602)
........+...+ ..++++||||+|+..|+.++..|... ...
T Consensus 228 ~~~~~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~g 305 (737)
T PRK02362 228 SKDDTLNLVLDTL--EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKG 305 (737)
T ss_pred cchHHHHHHHHHH--HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhC
Confidence 0011112222222 24679999999999999887776532 136
Q ss_pred eeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEE----cC-----CCCChhhHHHHhhhcccCCCc
Q 007481 270 AAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN----YA-----CPRDLTSYVHRVGRTARAGRE 340 (602)
Q Consensus 270 ~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~----~d-----~p~s~~~yiQriGRa~R~g~~ 340 (602)
+.++||+|++.+|..+++.|++|.++|||||+++++|+|+|.+++||+ || .|.+..+|+||+|||||.|.+
T Consensus 306 va~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d 385 (737)
T PRK02362 306 AAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLD 385 (737)
T ss_pred EEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 789999999999999999999999999999999999999999999997 66 688999999999999998865
Q ss_pred --ceEEEEEecCc
Q 007481 341 --GYAVTFVTDND 351 (602)
Q Consensus 341 --g~~i~l~~~~d 351 (602)
|.+++++...+
T Consensus 386 ~~G~~ii~~~~~~ 398 (737)
T PRK02362 386 PYGEAVLLAKSYD 398 (737)
T ss_pred CCceEEEEecCch
Confidence 99999987653
No 43
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=6.7e-44 Score=397.64 Aligned_cols=316 Identities=21% Similarity=0.224 Sum_probs=244.3
Q ss_pred CCCCCCcHHHHHHHHHHhcCC-CEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEE-EEEcChHHHHHHHHHHHHHHh
Q 007481 16 LGYSKPTPIQAACIPLALTGR-DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRV-LILTPTRELAVQVHSMIEKIA 93 (602)
Q Consensus 16 ~g~~~pt~~Q~~~i~~~l~g~-dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~v-LiL~Ptr~La~Q~~~~~~~l~ 93 (602)
.||. |||||.++||.++.|+ ++++.+|||||||.+|.++++.. ... ...++. ++++|||+|+.|+++.+..++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~---~~~~~rLv~~vPtReLa~Qi~~~~~~~~ 86 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG---AKVPRRLVYVVNRRTVVDQVTEEAEKIG 86 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc---ccccceEEEeCchHHHHHHHHHHHHHHH
Confidence 5998 9999999999999998 57778999999999766555522 111 123344 557799999999999999999
Q ss_pred hcC-----------------------CceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCC----------
Q 007481 94 QFT-----------------------DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSV---------- 140 (602)
Q Consensus 94 ~~~-----------------------~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~---------- 140 (602)
+.. ++++..++||.+...++..+..+++|||+|+ |++.+...+
T Consensus 87 k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~~~ 162 (844)
T TIGR02621 87 ERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFKSR 162 (844)
T ss_pred HHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccccccccc
Confidence 865 4889999999999999999999999999994 555443211
Q ss_pred -----CCCCcceEEEeCccccccCCcHHHHHHHHHhC--CCC---cceeeeeccCChhHHHHHHHhcCCCeEEecCCCCC
Q 007481 141 -----DLDDLAVLILDEADRLLELGFSAEIHELVRLC--PKR---RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK 210 (602)
Q Consensus 141 -----~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~--~~~---~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~ 210 (602)
.++++++||||||| ++++|...+..|+..+ +.. .|+++||||++.++..+...++.+|..+.+.....
T Consensus 163 pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l 240 (844)
T TIGR02621 163 PLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRL 240 (844)
T ss_pred cchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccc
Confidence 26789999999999 7889999999999964 432 69999999999988888878887887666544333
Q ss_pred CCCCceeeeeeechhhhh-hHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHH-----H
Q 007481 211 RPSTLTEEVVRIRRMREV-NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRL-----E 284 (602)
Q Consensus 211 ~~~~l~~~~~~~~~~~~~-~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~-----~ 284 (602)
....+.+ ++.+...... .....+..+. ...++++||||+|++.|+.++..|...++ ..|||+|++.+|. .
T Consensus 241 ~a~ki~q-~v~v~~e~Kl~~lv~~L~~ll-~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~ 316 (844)
T TIGR02621 241 AAKKIVK-LVPPSDEKFLSTMVKELNLLM-KDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKE 316 (844)
T ss_pred cccceEE-EEecChHHHHHHHHHHHHHHH-hhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHH
Confidence 3333443 2222211100 1111122122 23467899999999999999999998877 8999999999999 8
Q ss_pred HHHHHhc----CC-------ceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCc-ceEEEEEec
Q 007481 285 ALELFRK----QH-------VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE-GYAVTFVTD 349 (602)
Q Consensus 285 il~~F~~----g~-------~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~-g~~i~l~~~ 349 (602)
+++.|++ |. ..|||||+++++||||+. ++||++.+| .++|+||+||+||+|+. +..++++..
T Consensus 317 il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 317 IFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 8999987 44 689999999999999987 899998877 68999999999999985 444665543
No 44
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.9e-43 Score=403.93 Aligned_cols=332 Identities=20% Similarity=0.268 Sum_probs=259.3
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPL-ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 80 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~-~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~ 80 (602)
+|+|++.+++.|...||..|+|+|.+||+. ++.|+|+++++|||||||++|.+|++..+... +.++|||+|+++
T Consensus 5 ~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-----~~~~l~l~P~~a 79 (720)
T PRK00254 5 ELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-----GGKAVYLVPLKA 79 (720)
T ss_pred HcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-----CCeEEEEeChHH
Confidence 689999999999999999999999999986 78899999999999999999999999988643 347999999999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC
Q 007481 81 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 160 (602)
Q Consensus 81 La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g 160 (602)
|+.|+++.+..|.. .++++..++|+.+....+ ...++|+|+||+++..++++. ...+.++++|||||+|.+.+.+
T Consensus 80 La~q~~~~~~~~~~-~g~~v~~~~Gd~~~~~~~---~~~~~IiV~Tpe~~~~ll~~~-~~~l~~l~lvViDE~H~l~~~~ 154 (720)
T PRK00254 80 LAEEKYREFKDWEK-LGLRVAMTTGDYDSTDEW---LGKYDIIIATAEKFDSLLRHG-SSWIKDVKLVVADEIHLIGSYD 154 (720)
T ss_pred HHHHHHHHHHHHhh-cCCEEEEEeCCCCCchhh---hccCCEEEEcHHHHHHHHhCC-chhhhcCCEEEEcCcCccCCcc
Confidence 99999999988753 589999999987654322 356899999999998888764 3457889999999999999888
Q ss_pred cHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceee-----eeeechhhh----hhHH
Q 007481 161 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEE-----VVRIRRMRE----VNQE 231 (602)
Q Consensus 161 f~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~-----~~~~~~~~~----~~k~ 231 (602)
+...+..++..++...|++++|||+++ ..++... +..+.. ....++..+... ++....... ....
T Consensus 155 rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~w-l~~~~~----~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (720)
T PRK00254 155 RGATLEMILTHMLGRAQILGLSATVGN-AEELAEW-LNAELV----VSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWE 228 (720)
T ss_pred chHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHHH-hCCccc----cCCCCCCcceeeEecCCeeeccCcchhcchHHHH
Confidence 889999999999889999999999975 3445443 322221 111222222111 111111000 0011
Q ss_pred HHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhh---------------------------------cCCceeeccCCCC
Q 007481 232 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL---------------------------------AALKAAELHGNLT 278 (602)
Q Consensus 232 ~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~---------------------------------~g~~~~~lhg~~~ 278 (602)
..+...+. .+.++||||+|+..|+.++..|.. ....+.++||+|+
T Consensus 229 ~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~ 306 (720)
T PRK00254 229 SLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLG 306 (720)
T ss_pred HHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCC
Confidence 12222222 367899999999999877655521 1235889999999
Q ss_pred HHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEE-------cCCCC-ChhhHHHHhhhcccCC--CcceEEEEEe
Q 007481 279 QAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN-------YACPR-DLTSYVHRVGRTARAG--REGYAVTFVT 348 (602)
Q Consensus 279 ~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~-------~d~p~-s~~~yiQriGRa~R~g--~~g~~i~l~~ 348 (602)
+.+|..+++.|++|.++|||||+++++|+|+|.+++||. ++.|. +...|.||+|||||.| ..|.+++++.
T Consensus 307 ~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~ 386 (720)
T PRK00254 307 RTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVAT 386 (720)
T ss_pred HHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEec
Confidence 999999999999999999999999999999999999993 55544 5679999999999965 6799999988
Q ss_pred cCc
Q 007481 349 DND 351 (602)
Q Consensus 349 ~~d 351 (602)
..+
T Consensus 387 ~~~ 389 (720)
T PRK00254 387 TEE 389 (720)
T ss_pred Ccc
Confidence 765
No 45
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=8.7e-43 Score=399.39 Aligned_cols=334 Identities=21% Similarity=0.227 Sum_probs=259.6
Q ss_pred CCCCHHHHHHHH-HCCCCCCcHHHHHHHHHHhcC------CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEE
Q 007481 3 LNLSRPLLRACE-ALGYSKPTPIQAACIPLALTG------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 75 (602)
Q Consensus 3 l~L~~~ll~~l~-~~g~~~pt~~Q~~~i~~~l~g------~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL 75 (602)
+..+..++..+. .++|. |||+|.+||+.++.+ .|++++||||||||.+|++|++..+.. +.+++||
T Consensus 434 ~~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~------g~qvlvL 506 (926)
T TIGR00580 434 FPPDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD------GKQVAVL 506 (926)
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh------CCeEEEE
Confidence 445566666664 57995 999999999999985 799999999999999999999988753 3579999
Q ss_pred cChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHH---Hc-CCCcEEEECcHHHHHHHHccCCCCCCCcceEEEe
Q 007481 76 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA---LR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 151 (602)
Q Consensus 76 ~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~---l~-~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlD 151 (602)
+||++||.|+++.+..+....++++..++|+.+...+... +. +.++|||+||.. +. ..+.+.++++||||
T Consensus 507 vPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l~--~~v~f~~L~llVID 580 (926)
T TIGR00580 507 VPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----LQ--KDVKFKDLGLLIID 580 (926)
T ss_pred eCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----hh--CCCCcccCCEEEee
Confidence 9999999999999999888788999999998775544333 22 468999999942 22 24678899999999
Q ss_pred CccccccCCcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHH
Q 007481 152 EADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE 231 (602)
Q Consensus 152 Eah~l~~~gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~ 231 (602)
|+|++ .......+...+..+|+++|||||.+....+....+.++..+...+.. +. .+...+.... ......
T Consensus 581 Eahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~-R~-~V~t~v~~~~--~~~i~~ 651 (926)
T TIGR00580 581 EEQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED-RL-PVRTFVMEYD--PELVRE 651 (926)
T ss_pred ccccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC-cc-ceEEEEEecC--HHHHHH
Confidence 99994 333445566677889999999999887766666666666655543322 11 1222222211 111111
Q ss_pred HHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCc
Q 007481 232 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI 309 (602)
Q Consensus 232 ~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~--g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDi 309 (602)
.++..+ ..+++++|||+++..++.++..|... ++++..+||+|++.+|..++.+|++|+++|||||+++++|||+
T Consensus 652 ~i~~el---~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDI 728 (926)
T TIGR00580 652 AIRREL---LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDI 728 (926)
T ss_pred HHHHHH---HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhccccc
Confidence 222211 24679999999999999999999874 7899999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCC-ChhhHHHHhhhcccCCCcceEEEEEecC------cHHHHHHHHHH
Q 007481 310 IGVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVTDN------DRSLLKAIAKR 361 (602)
Q Consensus 310 p~v~~VI~~d~p~-s~~~yiQriGRa~R~g~~g~~i~l~~~~------d~~~l~~i~~~ 361 (602)
|++++||++++|. +..+|.||+||+||.|+.|.||+++.+. +.+.++.+.+.
T Consensus 729 p~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 729 PNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred ccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHh
Confidence 9999999999975 6779999999999999999999998653 34455555443
No 46
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-45 Score=341.94 Aligned_cols=320 Identities=35% Similarity=0.597 Sum_probs=277.6
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
++-|-|+|++|+-+.||..|+..|.+|||.+..|-|++..|..|.|||++|.+..++.+...+. ...+|++|.||+|
T Consensus 46 dfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g---~vsvlvmchtrel 122 (387)
T KOG0329|consen 46 DFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDG---QVSVLVMCHTREL 122 (387)
T ss_pred hhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCC---eEEEEEEeccHHH
Confidence 4668999999999999999999999999999999999999999999999999999999866543 3569999999999
Q ss_pred HHHHHHHHHHHhhcC-CceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccccc-C
Q 007481 82 AVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-L 159 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~-~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~-~ 159 (602)
|-|+.+....|+++. ++++.+++||.+.......+.+.|+|+|+|||+++.+.++. .+++.++...|+||||.|++ .
T Consensus 123 afqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k-~l~lk~vkhFvlDEcdkmle~l 201 (387)
T KOG0329|consen 123 AFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNR-SLNLKNVKHFVLDECDKMLEQL 201 (387)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhc-cCchhhcceeehhhHHHHHHHH
Confidence 999999999999985 79999999999999888899999999999999999999884 79999999999999998875 3
Q ss_pred CcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCC-CCCCCceeeeeeechhhhhhHHHHHHHHh
Q 007481 160 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSA-KRPSTLTEEVVRIRRMREVNQEAVLLSLC 238 (602)
Q Consensus 160 gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~k~~~l~~l~ 238 (602)
..+..+++|.+..|...|++.||||++.++......++.+|+.+.++... .+..++.|.++.+.. ..+...+..++
T Consensus 202 DMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke---~eKNrkl~dLL 278 (387)
T KOG0329|consen 202 DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKE---NEKNRKLNDLL 278 (387)
T ss_pred HHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhh---hhhhhhhhhhh
Confidence 46888999999999999999999999999999999999999999887543 455677777777644 33444455555
Q ss_pred hhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEc
Q 007481 239 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINY 318 (602)
Q Consensus 239 ~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~ 318 (602)
....-..++||+.+.... + | .-+ ||||++++||+||..++.||||
T Consensus 279 d~LeFNQVvIFvKsv~Rl---------------------~----------f---~kr-~vat~lfgrgmdiervNi~~NY 323 (387)
T KOG0329|consen 279 DVLEFNQVVIFVKSVQRL---------------------S----------F---QKR-LVATDLFGRGMDIERVNIVFNY 323 (387)
T ss_pred hhhhhcceeEeeehhhhh---------------------h----------h---hhh-hHHhhhhccccCcccceeeecc
Confidence 555567899999887650 0 3 112 8999999999999999999999
Q ss_pred CCCCChhhHHHHhhhcccCCCcceEEEEEec-CcHHHHHHHHHHhc
Q 007481 319 ACPRDLTSYVHRVGRTARAGREGYAVTFVTD-NDRSLLKAIAKRAG 363 (602)
Q Consensus 319 d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~-~d~~~l~~i~~~~~ 363 (602)
|+|.+..+|+||+|||||.|..|.+|++++. ++...+..+..++.
T Consensus 324 dmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~ 369 (387)
T KOG0329|consen 324 DMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFE 369 (387)
T ss_pred CCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhh
Confidence 9999999999999999999999999999875 46667766666553
No 47
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.3e-41 Score=397.49 Aligned_cols=318 Identities=20% Similarity=0.218 Sum_probs=253.4
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHhcC------CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 8 PLLRACEALGYSKPTPIQAACIPLALTG------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 8 ~ll~~l~~~g~~~pt~~Q~~~i~~~l~g------~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+..+...+++| .||++|.+||+.++.+ .|++++|+||||||.+|+.+++..+. .+.+++||+||++|
T Consensus 589 ~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~------~g~qvlvLvPT~eL 661 (1147)
T PRK10689 589 QYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE------NHKQVAVLVPTTLL 661 (1147)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH------cCCeEEEEeCcHHH
Confidence 44556688999 6999999999999987 89999999999999998888776653 35589999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHc----CCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccc
Q 007481 82 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR----SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 157 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~ 157 (602)
|.|+++.+..+....++++..++|+.+...+...+. +.++|+|+||+.+ . ..+.+.++++|||||+|++
T Consensus 662 A~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~--~~v~~~~L~lLVIDEahrf- 734 (1147)
T PRK10689 662 AQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q--SDVKWKDLGLLIVDEEHRF- 734 (1147)
T ss_pred HHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h--CCCCHhhCCEEEEechhhc-
Confidence 999999999876666888888999888766655442 5689999999643 2 2456788999999999996
Q ss_pred cCCcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHH
Q 007481 158 ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 237 (602)
Q Consensus 158 ~~gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l 237 (602)
|+. ....+..++..+|+++|||||.+....+....+.++..+...+.. + ..+...+..+. ....+..++..+
T Consensus 735 --G~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~-r-~~v~~~~~~~~--~~~~k~~il~el 806 (1147)
T PRK10689 735 --GVR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR-R-LAVKTFVREYD--SLVVREAILREI 806 (1147)
T ss_pred --chh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC-C-CCceEEEEecC--cHHHHHHHHHHH
Confidence 333 245567778899999999999988888777778888777653332 1 12222222221 111223333333
Q ss_pred hhhcCCCeEEEEeCcHHHHHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEE
Q 007481 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 315 (602)
Q Consensus 238 ~~~~~~~kvIIF~~s~~~a~~l~~~L~~~--g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~V 315 (602)
. .+++++|||+++..++.++..|... +..+..+||+|++.+|.+++.+|++|+++|||||+++++|||+|++++|
T Consensus 807 ~---r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~V 883 (1147)
T PRK10689 807 L---RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTI 883 (1147)
T ss_pred h---cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEE
Confidence 2 3579999999999999999999876 7889999999999999999999999999999999999999999999999
Q ss_pred EEcCCC-CChhhHHHHhhhcccCCCcceEEEEEecC
Q 007481 316 INYACP-RDLTSYVHRVGRTARAGREGYAVTFVTDN 350 (602)
Q Consensus 316 I~~d~p-~s~~~yiQriGRa~R~g~~g~~i~l~~~~ 350 (602)
|+.+++ .+..+|+||+||+||.|+.|.|++++.+.
T Consensus 884 Ii~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 884 IIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred EEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 965443 35678999999999999999999988543
No 48
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=2.7e-41 Score=395.58 Aligned_cols=283 Identities=22% Similarity=0.251 Sum_probs=224.9
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhc
Q 007481 16 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 95 (602)
Q Consensus 16 ~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~ 95 (602)
+|+ .|||+|..++|.++.|+|++++||||||||+ |+++++..+.. .+.++|||+||++|+.|+++.++.++..
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-----~g~~alIL~PTreLa~Qi~~~l~~l~~~ 149 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-----KGKKSYIIFPTRLLVEQVVEKLEKFGEK 149 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-----cCCeEEEEeccHHHHHHHHHHHHHHhhh
Confidence 587 7999999999999999999999999999996 55666554432 3568999999999999999999999998
Q ss_pred CCceEEEEECCCCH-----HHHHHHHc-CCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccccc-----------
Q 007481 96 TDIRCCLVVGGLST-----KMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE----------- 158 (602)
Q Consensus 96 ~~i~v~~~~g~~~~-----~~~~~~l~-~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~----------- 158 (602)
.++.+..++|+.+. ..+...+. +.++|+|+||++|.+++. .+....+++|||||||+|++
T Consensus 150 ~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~---~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~ 226 (1176)
T PRK09401 150 VGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD---ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYL 226 (1176)
T ss_pred cCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH---hccccccCEEEEEChHHhhhcccchhhHHHh
Confidence 88888888876542 22233333 568999999999999886 24566799999999999986
Q ss_pred CCcH-HHHHHHHHhCCC------------------------CcceeeeeccCChh-HHHHHHHhcCCCeEEecCCCCCCC
Q 007481 159 LGFS-AEIHELVRLCPK------------------------RRQTMLFSATLTED-VDELIKLSLTKPLRLSADPSAKRP 212 (602)
Q Consensus 159 ~gf~-~~i~~i~~~~~~------------------------~~q~il~SAT~~~~-~~~l~~~~l~~p~~~~~~~~~~~~ 212 (602)
.||. +.+..++..++. ..|+++||||+++. +.. ..+..++.+.+.......
T Consensus 227 lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~~~ 303 (1176)
T PRK09401 227 LGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVFYL 303 (1176)
T ss_pred CCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCccccc
Confidence 6785 677777777764 68999999999875 332 233455555555444445
Q ss_pred CCceeeeeeechhhhhhHHHHHHHHhhhcCCCeEEEEeCcHHH---HHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHH
Q 007481 213 STLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQA---AHRLKILFGLAALKAAELHGNLTQAQRLEALELF 289 (602)
Q Consensus 213 ~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~kvIIF~~s~~~---a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F 289 (602)
.++.+.++.+. .+...+..++... +.++||||++... ++.++.+|...|+++..+||++ ...+++|
T Consensus 304 rnI~~~yi~~~-----~k~~~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F 372 (1176)
T PRK09401 304 RNIVDSYIVDE-----DSVEKLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKF 372 (1176)
T ss_pred CCceEEEEEcc-----cHHHHHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHH
Confidence 56777666543 3344555555443 4689999999777 9999999999999999999999 2346999
Q ss_pred hcCCceEEEE----cCccccccCcCC-ccEEEEcCCCC
Q 007481 290 RKQHVDFLIA----TDVAARGLDIIG-VQTVINYACPR 322 (602)
Q Consensus 290 ~~g~~~iLVa----T~~~~~GlDip~-v~~VI~~d~p~ 322 (602)
++|+++|||| |++++||||+|+ +++||||++|.
T Consensus 373 ~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 373 EEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred HCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 9999999999 699999999999 89999999996
No 49
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=3.8e-41 Score=373.61 Aligned_cols=376 Identities=23% Similarity=0.288 Sum_probs=287.1
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCC--CCCCCcEEEEEcChHHH
Q 007481 4 NLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP--KRIPAIRVLILTPTREL 81 (602)
Q Consensus 4 ~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~--~~~~~~~vLiL~Ptr~L 81 (602)
-|++.+.+++... |..|||.|.++||.+..|+|+++.||||||||.++.+|++..+.... ....+..+|||+|.++|
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 3789999999888 99999999999999999999999999999999999999999999884 22346789999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHcc-CCCCCCCcceEEEeCccccccCC
Q 007481 82 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS-MSVDLDDLAVLILDEADRLLELG 160 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~-~~~~l~~l~llVlDEah~l~~~g 160 (602)
...+...+..+....|+.+.+-+|+.+.........++|||+||||+.|.-.+.+. ..-.|.++.++||||.|.+.+.-
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 99999999999999999999999999998888888999999999999998777652 12258899999999999987543
Q ss_pred c----HHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCC--CeEEecCCCCCCCCCceeeeeeec----hhhhhhH
Q 007481 161 F----SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTK--PLRLSADPSAKRPSTLTEEVVRIR----RMREVNQ 230 (602)
Q Consensus 161 f----~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~--p~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~k 230 (602)
- .-.+..+....+ ..|.|++|||.. +..+.++..... +..+......... .+.-...... .......
T Consensus 166 RG~~Lsl~LeRL~~l~~-~~qRIGLSATV~-~~~~varfL~g~~~~~~Iv~~~~~k~~-~i~v~~p~~~~~~~~~~~~~~ 242 (814)
T COG1201 166 RGVQLALSLERLRELAG-DFQRIGLSATVG-PPEEVAKFLVGFGDPCEIVDVSAAKKL-EIKVISPVEDLIYDEELWAAL 242 (814)
T ss_pred cchhhhhhHHHHHhhCc-ccEEEeehhccC-CHHHHHHHhcCCCCceEEEEcccCCcc-eEEEEecCCccccccchhHHH
Confidence 2 233445555556 899999999997 444445444433 4443322222111 1110000000 0011112
Q ss_pred HHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcC-CceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCc
Q 007481 231 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAA-LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI 309 (602)
Q Consensus 231 ~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g-~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDi 309 (602)
...+..++..+ ..+|||+||+..++.+...|...+ ..+..+||+++.++|..+.+.|++|+++++|||+.++-|||+
T Consensus 243 ~~~i~~~v~~~--~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDi 320 (814)
T COG1201 243 YERIAELVKKH--RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDI 320 (814)
T ss_pred HHHHHHHHhhc--CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhcccc
Confidence 23334444443 389999999999999999999887 889999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCChhhHHHHhhhccc-CCCcceEEEEEecCcHHHHHHH--H-HHhcCcchhhhhhhhhhHHHHHHHHH
Q 007481 310 IGVQTVINYACPRDLTSYVHRVGRTAR-AGREGYAVTFVTDNDRSLLKAI--A-KRAGSKLKSRIVAEQSITKWSKIIEQ 385 (602)
Q Consensus 310 p~v~~VI~~d~p~s~~~yiQriGRa~R-~g~~g~~i~l~~~~d~~~l~~i--~-~~~~~~~~~~~~~~~~~~~~~~~i~~ 385 (602)
.+++.||+|+.|.+...++||+||+|. .|.....+++... -..++..+ . ......+..-.++.+.++.+.+++-.
T Consensus 321 G~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~-r~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg 399 (814)
T COG1201 321 GDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED-RDDLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVG 399 (814)
T ss_pred CCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC-HHHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHH
Confidence 999999999999999999999999886 5666777777665 33344432 2 22233444455555556655555544
Q ss_pred H
Q 007481 386 M 386 (602)
Q Consensus 386 ~ 386 (602)
+
T Consensus 400 ~ 400 (814)
T COG1201 400 M 400 (814)
T ss_pred H
Confidence 3
No 50
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=6.9e-41 Score=378.79 Aligned_cols=317 Identities=22% Similarity=0.283 Sum_probs=239.0
Q ss_pred HHHHHHH-HHCCCCCCcHHHHHHHHHHhcC------CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChH
Q 007481 7 RPLLRAC-EALGYSKPTPIQAACIPLALTG------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 79 (602)
Q Consensus 7 ~~ll~~l-~~~g~~~pt~~Q~~~i~~~l~g------~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr 79 (602)
..+++.+ ..++|. ||++|.++|+.++.+ .+++++||||||||++|++|++..+. .+.+++||+||+
T Consensus 248 ~~~~~~~~~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~------~g~q~lilaPT~ 320 (681)
T PRK10917 248 GELLKKFLASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE------AGYQAALMAPTE 320 (681)
T ss_pred hHHHHHHHHhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH------cCCeEEEEeccH
Confidence 3444444 678884 999999999999986 48999999999999999999998774 356899999999
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHH---HHHc-CCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccc
Q 007481 80 ELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE---TALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 155 (602)
Q Consensus 80 ~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~---~~l~-~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~ 155 (602)
+||.|+++.+..+....++++++++|+.+..... ..+. +.++|+|+||+.+.+ .+.+.++++|||||+|+
T Consensus 321 ~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 321 ILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD------DVEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc------cchhcccceEEEechhh
Confidence 9999999999999988899999999998854433 2333 469999999988743 34577899999999999
Q ss_pred cccCCcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHH
Q 007481 156 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235 (602)
Q Consensus 156 l~~~gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~ 235 (602)
+.. .....+......+++++|||||.+....+.......+..+...+.. + ..+...++.. ......+.
T Consensus 395 fg~-----~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~-r-~~i~~~~~~~-----~~~~~~~~ 462 (681)
T PRK10917 395 FGV-----EQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPG-R-KPITTVVIPD-----SRRDEVYE 462 (681)
T ss_pred hhH-----HHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCC-C-CCcEEEEeCc-----ccHHHHHH
Confidence 532 2233334445568999999999876555443332233222221111 1 1122222211 11122222
Q ss_pred HHhhh-cCCCeEEEEeCcH--------HHHHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccc
Q 007481 236 SLCSK-TFTSKVIIFSGTK--------QAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 304 (602)
Q Consensus 236 ~l~~~-~~~~kvIIF~~s~--------~~a~~l~~~L~~~--g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~ 304 (602)
.+... ..+.+++|||++. ..+..++..|... ++.+..+||+|++.+|..++++|++|+++|||||++++
T Consensus 463 ~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie 542 (681)
T PRK10917 463 RIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIE 542 (681)
T ss_pred HHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECccee
Confidence 22221 3467999999954 3455666666654 57899999999999999999999999999999999999
Q ss_pred cccCcCCccEEEEcCCCC-ChhhHHHHhhhcccCCCcceEEEEEe
Q 007481 305 RGLDIIGVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVT 348 (602)
Q Consensus 305 ~GlDip~v~~VI~~d~p~-s~~~yiQriGRa~R~g~~g~~i~l~~ 348 (602)
+|+|+|++++||++++|. ....|.|++||+||.|..|.|++++.
T Consensus 543 ~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 543 VGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred eCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 999999999999999997 57888899999999999999999995
No 51
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=9.3e-41 Score=380.03 Aligned_cols=336 Identities=18% Similarity=0.235 Sum_probs=250.9
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+|+|++.+++.+...||. |+|+|.++++.++.|+|++++||||||||+++.+++++.+.. +.++|||+|+++|
T Consensus 5 ~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~------~~k~v~i~P~raL 77 (674)
T PRK01172 5 DLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA------GLKSIYIVPLRSL 77 (674)
T ss_pred hcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh------CCcEEEEechHHH
Confidence 689999999999999998 999999999999999999999999999999999999988753 2369999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCc
Q 007481 82 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF 161 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf 161 (602)
|.|+++.+..+. ..++.+...+|+...... ....++|+|+||+++..++.+.. ..+.++++||+||||.+.+.++
T Consensus 78 a~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~-~~l~~v~lvViDEaH~l~d~~r 152 (674)
T PRK01172 78 AMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDP-YIINDVGLIVADEIHIIGDEDR 152 (674)
T ss_pred HHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCCh-hHHhhcCEEEEecchhccCCCc
Confidence 999999998864 357888888888654322 23567999999999988887643 4578899999999999988777
Q ss_pred HHHHHHHHH---hCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeee-----echhhhhhHHHH
Q 007481 162 SAEIHELVR---LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVR-----IRRMREVNQEAV 233 (602)
Q Consensus 162 ~~~i~~i~~---~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~k~~~ 233 (602)
...+..++. ..+...|+|++|||+++ ..++... +..+.. ....++..+...+.. +.. .......
T Consensus 153 g~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~w-l~~~~~----~~~~r~vpl~~~i~~~~~~~~~~-~~~~~~~- 224 (674)
T PRK01172 153 GPTLETVLSSARYVNPDARILALSATVSN-ANELAQW-LNASLI----KSNFRPVPLKLGILYRKRLILDG-YERSQVD- 224 (674)
T ss_pred cHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHH-hCCCcc----CCCCCCCCeEEEEEecCeeeecc-ccccccc-
Confidence 666666543 45677899999999975 3444443 222211 111122222211111 000 0000001
Q ss_pred HHHHhh--hcCCCeEEEEeCcHHHHHHHHHHHhhc-------------------------CCceeeccCCCCHHHHHHHH
Q 007481 234 LLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLA-------------------------ALKAAELHGNLTQAQRLEAL 286 (602)
Q Consensus 234 l~~l~~--~~~~~kvIIF~~s~~~a~~l~~~L~~~-------------------------g~~~~~lhg~~~~~eR~~il 286 (602)
+..++. ...++++||||++++.++.++..|... ...+.++||+|++.+|..++
T Consensus 225 ~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve 304 (674)
T PRK01172 225 INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIE 304 (674)
T ss_pred HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHH
Confidence 111222 134679999999999999998877542 12478899999999999999
Q ss_pred HHHhcCCceEEEEcCccccccCcCCccEEEEcCC---------CCChhhHHHHhhhcccCCC--cceEEEEEecCc-HHH
Q 007481 287 ELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC---------PRDLTSYVHRVGRTARAGR--EGYAVTFVTDND-RSL 354 (602)
Q Consensus 287 ~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~---------p~s~~~yiQriGRa~R~g~--~g~~i~l~~~~d-~~~ 354 (602)
+.|++|.++|||||+++++|+|+|...+|| ++. |.+..+|.||+|||||.|. .|.+++++...+ ...
T Consensus 305 ~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~ 383 (674)
T PRK01172 305 EMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDA 383 (674)
T ss_pred HHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHH
Confidence 999999999999999999999999865444 443 4588899999999999884 577888766543 344
Q ss_pred HHHH
Q 007481 355 LKAI 358 (602)
Q Consensus 355 l~~i 358 (602)
++.+
T Consensus 384 ~~~~ 387 (674)
T PRK01172 384 AKKY 387 (674)
T ss_pred HHHH
Confidence 4443
No 52
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2.1e-40 Score=372.48 Aligned_cols=317 Identities=21% Similarity=0.246 Sum_probs=236.6
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHhcC------CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 8 PLLRACEALGYSKPTPIQAACIPLALTG------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 8 ~ll~~l~~~g~~~pt~~Q~~~i~~~l~g------~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
.+.+.+..++| +||++|.+||+.++.+ .+.+++||||||||++|++|++..+. .+.+++|++||++|
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~------~g~qvlilaPT~~L 296 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE------AGYQVALMAPTEIL 296 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH------cCCcEEEECCHHHH
Confidence 34566789999 6999999999999986 26899999999999999999998774 34579999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEECCCCHHHH---HHHH-cCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccc
Q 007481 82 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ---ETAL-RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 157 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~---~~~l-~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~ 157 (602)
|.|+++.+..+....++++++++|+.+.... ...+ .+.++|+|+||+.+.+ .+.+.++++|||||+|++.
T Consensus 297 A~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~------~~~~~~l~lvVIDEaH~fg 370 (630)
T TIGR00643 297 AEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE------KVEFKRLALVIIDEQHRFG 370 (630)
T ss_pred HHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc------cccccccceEEEechhhcc
Confidence 9999999999988889999999999876542 2233 3468999999988754 3557889999999999853
Q ss_pred cCCcHHHHHHHHHhCC--CCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHH
Q 007481 158 ELGFSAEIHELVRLCP--KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235 (602)
Q Consensus 158 ~~gf~~~i~~i~~~~~--~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~ 235 (602)
.. ....+..... ..+++++|||||.+....+..........+...+.. + ..+...++.. ......+.
T Consensus 371 ~~----qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~-r-~~i~~~~~~~-----~~~~~~~~ 439 (630)
T TIGR00643 371 VE----QRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPG-R-KPITTVLIKH-----DEKDIVYE 439 (630)
T ss_pred HH----HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCC-C-CceEEEEeCc-----chHHHHHH
Confidence 22 1122223332 267899999998765544332221111111111111 1 1122222211 11222233
Q ss_pred HHhhh-cCCCeEEEEeCcH--------HHHHHHHHHHhh--cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccc
Q 007481 236 SLCSK-TFTSKVIIFSGTK--------QAAHRLKILFGL--AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 304 (602)
Q Consensus 236 ~l~~~-~~~~kvIIF~~s~--------~~a~~l~~~L~~--~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~ 304 (602)
.+... ..+.+++|||+.. ..++.++..|.. .++.+..+||+|++.+|..+++.|++|+.+|||||++++
T Consensus 440 ~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie 519 (630)
T TIGR00643 440 FIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIE 519 (630)
T ss_pred HHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceee
Confidence 23222 2467899999875 455566666654 378899999999999999999999999999999999999
Q ss_pred cccCcCCccEEEEcCCCC-ChhhHHHHhhhcccCCCcceEEEEEe
Q 007481 305 RGLDIIGVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVT 348 (602)
Q Consensus 305 ~GlDip~v~~VI~~d~p~-s~~~yiQriGRa~R~g~~g~~i~l~~ 348 (602)
+|+|+|++++||++++|. +...|.|++||+||.|..|.|++++.
T Consensus 520 ~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 520 VGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred cCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 999999999999999996 67888999999999999999999983
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=8.6e-40 Score=383.79 Aligned_cols=342 Identities=21% Similarity=0.292 Sum_probs=244.4
Q ss_pred EEcCCCchHHHHHHHHHHHHHHcCCC-------CCCCcEEEEEcChHHHHHHHHHHHHHHh------------hcCCceE
Q 007481 40 GSAITGSGKTAAFALPTLERLLYRPK-------RIPAIRVLILTPTRELAVQVHSMIEKIA------------QFTDIRC 100 (602)
Q Consensus 40 i~a~TGSGKT~a~~l~il~~l~~~~~-------~~~~~~vLiL~Ptr~La~Q~~~~~~~l~------------~~~~i~v 100 (602)
|+||||||||++|.+|++..++.... ...++++|||+|+++|+.|+++.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999999999986431 1246799999999999999999887522 1247899
Q ss_pred EEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccC--C--cHHHHHHHHHhCCCCc
Q 007481 101 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL--G--FSAEIHELVRLCPKRR 176 (602)
Q Consensus 101 ~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~--g--f~~~i~~i~~~~~~~~ 176 (602)
...+|+.+...+...+...++|+|+||++|..++.+.....+.++++|||||+|.+.+. | +...+..+...++...
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 99999999888777778889999999999999887543346899999999999999865 3 3345666667778889
Q ss_pred ceeeeeccCChhHHHHHHHhc-CCCeEEecCCCCCCCCCceeeeeeechhhh------------------hhHHHHHHHH
Q 007481 177 QTMLFSATLTEDVDELIKLSL-TKPLRLSADPSAKRPSTLTEEVVRIRRMRE------------------VNQEAVLLSL 237 (602)
Q Consensus 177 q~il~SAT~~~~~~~l~~~~l-~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~------------------~~k~~~l~~l 237 (602)
|+|++|||+++ ..++..... ..|+.+.. ....+...+. .++.+..... .....+...+
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~Iv~-~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTVVN-PPAMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEEEC-CCCCcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 99999999986 455554332 33555432 2222222222 1121111000 0000111112
Q ss_pred hh-hcCCCeEEEEeCcHHHHHHHHHHHhhcC---------------------------------CceeeccCCCCHHHHH
Q 007481 238 CS-KTFTSKVIIFSGTKQAAHRLKILFGLAA---------------------------------LKAAELHGNLTQAQRL 283 (602)
Q Consensus 238 ~~-~~~~~kvIIF~~s~~~a~~l~~~L~~~g---------------------------------~~~~~lhg~~~~~eR~ 283 (602)
+. .....++||||||+..|+.++..|+... ..+..+||++++++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 22 1235789999999999999998887531 1256899999999999
Q ss_pred HHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccC-CCcceEEEEEecCcHHHHH---HHH
Q 007481 284 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA-GREGYAVTFVTDNDRSLLK---AIA 359 (602)
Q Consensus 284 ~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~-g~~g~~i~l~~~~d~~~l~---~i~ 359 (602)
.+++.|++|++++||||+.+++||||+++++||||+.|.+..+|+||+||+||. |..+.++++... ....+. -++
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~-r~dlle~~~~ve 396 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRT-RRDLVDSAVIVE 396 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCc-HHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999995 333444433332 222222 133
Q ss_pred HHhcCcchhhhhhhhhhHHHHHHHHH
Q 007481 360 KRAGSKLKSRIVAEQSITKWSKIIEQ 385 (602)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~i~~ 385 (602)
......++...++.+..+.+.+++-.
T Consensus 397 ~~l~g~iE~~~~p~nplDVLaqqiva 422 (1490)
T PRK09751 397 CMFAGRLENLTPPHNPLDVLAQQTVA 422 (1490)
T ss_pred HHhcCCCCccCCCCChHHHHHHHHHH
Confidence 44455566655555655555554433
No 54
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=9.2e-40 Score=350.81 Aligned_cols=326 Identities=22% Similarity=0.335 Sum_probs=258.0
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHh
Q 007481 14 EALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 93 (602)
Q Consensus 14 ~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~ 93 (602)
.-+||..++|-|.++|..+++|+|+++..|||+||+++|++|++-. ..-+|||.|..+|.....+.+...
T Consensus 11 ~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---------~G~TLVVSPLiSLM~DQV~~l~~~- 80 (590)
T COG0514 11 QVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---------EGLTLVVSPLISLMKDQVDQLEAA- 80 (590)
T ss_pred HHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---------CCCEEEECchHHHHHHHHHHHHHc-
Confidence 3579999999999999999999999999999999999999999743 124899999999976655555543
Q ss_pred hcCCceEEEEECCCCHHHHHHH----HcCCCcEEEECcHHHHHH-HHccCCCCCCCcceEEEeCccccccCC--cHHHHH
Q 007481 94 QFTDIRCCLVVGGLSTKMQETA----LRSMPDIVVATPGRMIDH-LRNSMSVDLDDLAVLILDEADRLLELG--FSAEIH 166 (602)
Q Consensus 94 ~~~~i~v~~~~g~~~~~~~~~~----l~~~~~IvI~Tp~~L~~~-l~~~~~~~l~~l~llVlDEah~l~~~g--f~~~i~ 166 (602)
|+.++.+.+..+..+.... ..+..+++.-+|++|..- +.+ .+.-..+.++||||||++..|| |+..+.
T Consensus 81 ---Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~--~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~ 155 (590)
T COG0514 81 ---GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLE--LLKRLPISLVAIDEAHCISQWGHDFRPDYR 155 (590)
T ss_pred ---CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHH--HHHhCCCceEEechHHHHhhcCCccCHhHH
Confidence 7889999988776554333 234579999999998643 221 1224457899999999999998 888777
Q ss_pred HHHH---hCCCCcceeeeeccCChhHHHHHHHh--cCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhhc
Q 007481 167 ELVR---LCPKRRQTMLFSATLTEDVDELIKLS--LTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241 (602)
Q Consensus 167 ~i~~---~~~~~~q~il~SAT~~~~~~~l~~~~--l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~ 241 (602)
.+-. .+| .+.++.+|||.++.+...+... +..+..+.. ...+| ++...++... ....+...+.. ....
T Consensus 156 ~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~--sfdRp-Ni~~~v~~~~--~~~~q~~fi~~-~~~~ 228 (590)
T COG0514 156 RLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRG--SFDRP-NLALKVVEKG--EPSDQLAFLAT-VLPQ 228 (590)
T ss_pred HHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEe--cCCCc-hhhhhhhhcc--cHHHHHHHHHh-hccc
Confidence 7644 444 6789999999998887766443 444433322 22232 2222222211 11122222222 1245
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCC
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACP 321 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p 321 (602)
..+..||||.|++.++.++..|...|+.+..+|++|+..+|..+.+.|..++..|+|||.++++|||-|+|.+|||||+|
T Consensus 229 ~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP 308 (590)
T COG0514 229 LSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLP 308 (590)
T ss_pred cCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCC
Confidence 56779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHH
Q 007481 322 RDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361 (602)
Q Consensus 322 ~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~ 361 (602)
.|.++|.|-+|||||.|....|++|+++.|....+.+.+.
T Consensus 309 ~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 309 GSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred CCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 9999999999999999999999999999998888777665
No 55
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=4.5e-39 Score=384.08 Aligned_cols=292 Identities=21% Similarity=0.265 Sum_probs=226.9
Q ss_pred HHHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHH
Q 007481 9 LLRACEA-LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHS 87 (602)
Q Consensus 9 ll~~l~~-~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~ 87 (602)
+.+.+.. +|| .|||+|+.+||.++.|+|+++.||||||||++++++++.... .+.++|||+||++|+.|+++
T Consensus 68 ~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~------~g~~aLVl~PTreLa~Qi~~ 140 (1638)
T PRK14701 68 FEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL------KGKKCYIILPTTLLVKQTVE 140 (1638)
T ss_pred HHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh------cCCeEEEEECHHHHHHHHHH
Confidence 4445554 899 699999999999999999999999999999965555543321 34579999999999999999
Q ss_pred HHHHHhhcC--CceEEEEECCCCHHHHHH---HHc-CCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccccc---
Q 007481 88 MIEKIAQFT--DIRCCLVVGGLSTKMQET---ALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE--- 158 (602)
Q Consensus 88 ~~~~l~~~~--~i~v~~~~g~~~~~~~~~---~l~-~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~--- 158 (602)
.+..++... ++.+..++|+.+...+.. .+. +.++|+|+||++|.+++... . ...+++|||||||+|+.
T Consensus 141 ~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~-~~~i~~iVVDEAD~ml~~~k 217 (1638)
T PRK14701 141 KIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--K-HLKFDFIFVDDVDAFLKASK 217 (1638)
T ss_pred HHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--h-hCCCCEEEEECceecccccc
Confidence 999998775 467788889988766533 233 45899999999999887642 1 26789999999999986
Q ss_pred --------CCcHHHHHH----HHH----------------------hCCCCcc-eeeeeccCChhHHHHHHHhcCCCeEE
Q 007481 159 --------LGFSAEIHE----LVR----------------------LCPKRRQ-TMLFSATLTEDVDELIKLSLTKPLRL 203 (602)
Q Consensus 159 --------~gf~~~i~~----i~~----------------------~~~~~~q-~il~SAT~~~~~~~l~~~~l~~p~~~ 203 (602)
+||...+.. ++. .++..+| ++++|||+++... .. ..+..+..+
T Consensus 218 nid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~-~~-~l~~~~l~f 295 (1638)
T PRK14701 218 NIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD-RV-KLYRELLGF 295 (1638)
T ss_pred ccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH-HH-HHhhcCeEE
Confidence 578877754 322 2355566 5779999986421 12 334677777
Q ss_pred ecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhhcCCCeEEEEeCcHHH---HHHHHHHHhhcCCceeeccCCCCHH
Q 007481 204 SADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQA---AHRLKILFGLAALKAAELHGNLTQA 280 (602)
Q Consensus 204 ~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~kvIIF~~s~~~---a~~l~~~L~~~g~~~~~lhg~~~~~ 280 (602)
.+.........+.+.++..... .+ ..+..++... +..+||||+|++. |+.++..|...|+++..+||+
T Consensus 296 ~v~~~~~~lr~i~~~yi~~~~~---~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~---- 366 (1638)
T PRK14701 296 EVGSGRSALRNIVDVYLNPEKI---IK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK---- 366 (1638)
T ss_pred EecCCCCCCCCcEEEEEECCHH---HH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch----
Confidence 7766665666777777654321 12 3455555544 5789999999875 589999999999999999995
Q ss_pred HHHHHHHHHhcCCceEEEEc----CccccccCcCC-ccEEEEcCCCC
Q 007481 281 QRLEALELFRKQHVDFLIAT----DVAARGLDIIG-VQTVINYACPR 322 (602)
Q Consensus 281 eR~~il~~F~~g~~~iLVaT----~~~~~GlDip~-v~~VI~~d~p~ 322 (602)
|..++++|++|+++||||| ++++||||+|+ |++|||||+|.
T Consensus 367 -R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk 412 (1638)
T PRK14701 367 -NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPK 412 (1638)
T ss_pred -HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCC
Confidence 8899999999999999999 58999999999 99999999997
No 56
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=2e-38 Score=372.13 Aligned_cols=291 Identities=23% Similarity=0.276 Sum_probs=221.9
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHH
Q 007481 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSM 88 (602)
Q Consensus 9 ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~ 88 (602)
+...+.......|||+|+.++|.++.|+|++++||||||||+ |++|++..+.. .++++|||+||++||.|+++.
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-----~g~~vLIL~PTreLa~Qi~~~ 140 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-----KGKRCYIILPTTLLVIQVAEK 140 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-----cCCeEEEEeCHHHHHHHHHHH
Confidence 334444434457999999999999999999999999999997 66777766543 246899999999999999999
Q ss_pred HHHHhhcCCceEE---EEECCCCHHHHHH---HHc-CCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccccc---
Q 007481 89 IEKIAQFTDIRCC---LVVGGLSTKMQET---ALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE--- 158 (602)
Q Consensus 89 ~~~l~~~~~i~v~---~~~g~~~~~~~~~---~l~-~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~--- 158 (602)
+..++...++.+. .++|+.+...+.. .+. +.++|+|+||++|.+++.... . .++++||||||+|++
T Consensus 141 l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~---~-~~~~iVvDEaD~~L~~~k 216 (1171)
T TIGR01054 141 ISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG---P-KFDFIFVDDVDALLKASK 216 (1171)
T ss_pred HHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc---C-CCCEEEEeChHhhhhccc
Confidence 9999987776543 4678887765432 233 459999999999999887521 2 789999999999998
Q ss_pred --------CCcHHH-HHHHH----------------------HhCCCCcc--eeeeecc-CChhHHHHHHHhcCCCeEEe
Q 007481 159 --------LGFSAE-IHELV----------------------RLCPKRRQ--TMLFSAT-LTEDVDELIKLSLTKPLRLS 204 (602)
Q Consensus 159 --------~gf~~~-i~~i~----------------------~~~~~~~q--~il~SAT-~~~~~~~l~~~~l~~p~~~~ 204 (602)
+||..+ +..++ ..++...| +++|||| +|..+.. ..+..++.+.
T Consensus 217 ~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~ 293 (1171)
T TIGR01054 217 NVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFE 293 (1171)
T ss_pred cHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceE
Confidence 678764 44432 34455555 5678999 4544332 3345555566
Q ss_pred cCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhhcCCCeEEEEeCcH---HHHHHHHHHHhhcCCceeeccCCCCHHH
Q 007481 205 ADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTK---QAAHRLKILFGLAALKAAELHGNLTQAQ 281 (602)
Q Consensus 205 ~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~kvIIF~~s~---~~a~~l~~~L~~~g~~~~~lhg~~~~~e 281 (602)
+........++.+.++.... +...+..++... +.++||||+++ +.|+.++..|...|+++..+||++++
T Consensus 294 v~~~~~~~r~I~~~~~~~~~-----~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~-- 365 (1171)
T TIGR01054 294 VGGGSDTLRNVVDVYVEDED-----LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK-- 365 (1171)
T ss_pred ecCccccccceEEEEEeccc-----HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH--
Confidence 65554455566666654321 123344555443 56899999999 99999999999999999999999974
Q ss_pred HHHHHHHHhcCCceEEEE----cCccccccCcCC-ccEEEEcCCCC
Q 007481 282 RLEALELFRKQHVDFLIA----TDVAARGLDIIG-VQTVINYACPR 322 (602)
Q Consensus 282 R~~il~~F~~g~~~iLVa----T~~~~~GlDip~-v~~VI~~d~p~ 322 (602)
.+++.|++|+++|||| |++++||||+|+ |++|||||+|.
T Consensus 366 --~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 366 --EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred --HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 6899999999999999 599999999999 89999998874
No 57
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.1e-39 Score=329.45 Aligned_cols=331 Identities=25% Similarity=0.326 Sum_probs=244.5
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcC
Q 007481 17 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 96 (602)
Q Consensus 17 g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~ 96 (602)
+.-+|+.||......++.+ |.+++.|||.|||+++++.+...+... .+ ++|+|+||+.|+.|.++.+..+...+
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~----~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip 85 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF----GG-KVLFLAPTKPLVLQHAEFCRKVTGIP 85 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc----CC-eEEEecCCchHHHHHHHHHHHHhCCC
Confidence 3457899999999888876 999999999999999888777776554 23 79999999999999999999998877
Q ss_pred CceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccccc-CCcHHHHHHHHHhCCCC
Q 007481 97 DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-LGFSAEIHELVRLCPKR 175 (602)
Q Consensus 97 ~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~-~gf~~~i~~i~~~~~~~ 175 (602)
.-.++.++|..+... ....+...+|+|+||+.+.+-|..+ .+++.++.+|||||||+-.. +.|......++.. ..+
T Consensus 86 ~~~i~~ltGev~p~~-R~~~w~~~kVfvaTPQvveNDl~~G-rid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~-~k~ 162 (542)
T COG1111 86 EDEIAALTGEVRPEE-REELWAKKKVFVATPQVVENDLKAG-RIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRS-AKN 162 (542)
T ss_pred hhheeeecCCCChHH-HHHHHhhCCEEEeccHHHHhHHhcC-ccChHHceEEEechhhhccCcchHHHHHHHHHHh-ccC
Confidence 788899999887654 3445677899999999998888774 68999999999999999764 4455555544443 456
Q ss_pred cceeeeeccCChhHHHHHHHhcC---CCeEEecCCC--------------------------------------------
Q 007481 176 RQTMLFSATLTEDVDELIKLSLT---KPLRLSADPS-------------------------------------------- 208 (602)
Q Consensus 176 ~q~il~SAT~~~~~~~l~~~~l~---~p~~~~~~~~-------------------------------------------- 208 (602)
+.++++||||..+...+....-+ ..+.+....+
T Consensus 163 ~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~ 242 (542)
T COG1111 163 PLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKEL 242 (542)
T ss_pred ceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 78999999997554433111000 0000000000
Q ss_pred ------C------------------CC-CC-------------------------Cceeeeeeech------h-------
Q 007481 209 ------A------------------KR-PS-------------------------TLTEEVVRIRR------M------- 225 (602)
Q Consensus 209 ------~------------------~~-~~-------------------------~l~~~~~~~~~------~------- 225 (602)
. .. .. ++...+..+.. .
T Consensus 243 g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~ 322 (542)
T COG1111 243 GVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAK 322 (542)
T ss_pred CceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHH
Confidence 0 00 00 00000000000 0
Q ss_pred ----------------------hhhhHHHHHHHHh----hhcCCCeEEEEeCcHHHHHHHHHHHhhcCCcee--ec----
Q 007481 226 ----------------------REVNQEAVLLSLC----SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAA--EL---- 273 (602)
Q Consensus 226 ----------------------~~~~k~~~l~~l~----~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~--~l---- 273 (602)
..-.+...+..++ ....+.++|||++.+++|+.+..+|...+.++. ++
T Consensus 323 ~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~ 402 (542)
T COG1111 323 SLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQAS 402 (542)
T ss_pred HHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccc
Confidence 0000111222222 344467999999999999999999999988774 22
Q ss_pred ---cCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecC
Q 007481 274 ---HGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 350 (602)
Q Consensus 274 ---hg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~ 350 (602)
..||+|.++.+++++|+.|+++|||||+++++|||||++++||.|++..|+..++||.||||| ++.|.+++|++.+
T Consensus 403 r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR-~r~Grv~vLvt~g 481 (542)
T COG1111 403 REGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR-KRKGRVVVLVTEG 481 (542)
T ss_pred cccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCcccc-CCCCeEEEEEecC
Confidence 247999999999999999999999999999999999999999999999999999999999999 5999999999999
Q ss_pred cHHHHHH
Q 007481 351 DRSLLKA 357 (602)
Q Consensus 351 d~~~l~~ 357 (602)
++...++
T Consensus 482 trdeayy 488 (542)
T COG1111 482 TRDEAYY 488 (542)
T ss_pred chHHHHH
Confidence 7655443
No 58
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.2e-38 Score=353.88 Aligned_cols=314 Identities=18% Similarity=0.183 Sum_probs=232.5
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCchHHHH---------HHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHH
Q 007481 22 TPIQAACIPLALTGRDICGSAITGSGKTAA---------FALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 92 (602)
Q Consensus 22 t~~Q~~~i~~~l~g~dvii~a~TGSGKT~a---------~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l 92 (602)
..+|+++++.++.|+++|+.|+||||||++ |++|.+..+..-.......+++|++||++||.|+...+...
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999986 33444444321111123458999999999999999998775
Q ss_pred hhc---CCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHH
Q 007481 93 AQF---TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELV 169 (602)
Q Consensus 93 ~~~---~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~ 169 (602)
..+ .+..+.+.+|+.+.. +........+|+|+|++.. ...+..+++|||||||++...+ +.+..++
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~~-~~~t~~k~~~Ilv~T~~L~--------l~~L~~v~~VVIDEaHEr~~~~--DllL~ll 314 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPDE-LINTNPKPYGLVFSTHKLT--------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVA 314 (675)
T ss_pred hCccccCCceEEEEECCcchH-HhhcccCCCCEEEEeCccc--------ccccccCCEEEccccccCccch--hHHHHHH
Confidence 544 467788899998732 2222334679999996521 2347789999999999988765 4444555
Q ss_pred HhC-CCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechh-------hhhhHHHHHHHHhhh-
Q 007481 170 RLC-PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRM-------REVNQEAVLLSLCSK- 240 (602)
Q Consensus 170 ~~~-~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~k~~~l~~l~~~- 240 (602)
... +..+|+++||||++.++..+ ..++.+|..+.+... ....+.+.++..... ....+...+..+...
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~ 391 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYT 391 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhh
Confidence 433 34469999999999888776 467778877766422 223344444322100 011122222222221
Q ss_pred -cCCCeEEEEeCcHHHHHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHH-hcCCceEEEEcCccccccCcCCccEEE
Q 007481 241 -TFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELF-RKQHVDFLIATDVAARGLDIIGVQTVI 316 (602)
Q Consensus 241 -~~~~kvIIF~~s~~~a~~l~~~L~~~--g~~~~~lhg~~~~~eR~~il~~F-~~g~~~iLVaT~~~~~GlDip~v~~VI 316 (602)
..++.+|||++++..++.+...|... ++.+..|||++++. .+.++.| ++|+.+||||||++++|||||+|++||
T Consensus 392 ~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VI 469 (675)
T PHA02653 392 PPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVY 469 (675)
T ss_pred cccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEE
Confidence 23568999999999999999999876 78999999999985 5677787 689999999999999999999999999
Q ss_pred EcC---CCC---------ChhhHHHHhhhcccCCCcceEEEEEecCcH
Q 007481 317 NYA---CPR---------DLTSYVHRVGRTARAGREGYAVTFVTDNDR 352 (602)
Q Consensus 317 ~~d---~p~---------s~~~yiQriGRa~R~g~~g~~i~l~~~~d~ 352 (602)
+++ .|. |..+|+||.|||||. .+|.|+.|+++.+.
T Consensus 470 D~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 470 DTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred ECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 998 565 888999999999998 79999999998764
No 59
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4e-37 Score=336.72 Aligned_cols=322 Identities=23% Similarity=0.226 Sum_probs=246.2
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 15 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 15 ~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
.+|. .|+|+|..++|.++.|+ |+.+.||+|||++|.+|++...+. +..++||+||++||.|.++++..+..
T Consensus 99 ~lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~------G~~v~VvTptreLA~qdae~~~~l~~ 169 (656)
T PRK12898 99 VLGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA------GLPVHVITVNDYLAERDAELMRPLYE 169 (656)
T ss_pred HhCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc------CCeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 4464 59999999999999999 999999999999999999987653 45799999999999999999999999
Q ss_pred cCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHH-HHHHHccCCC------------------------CCCCcceEE
Q 007481 95 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSV------------------------DLDDLAVLI 149 (602)
Q Consensus 95 ~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L-~~~l~~~~~~------------------------~l~~l~llV 149 (602)
+.++++++++|+.+. +.......++|+++|...| .|+|+.+... -...+.+.|
T Consensus 170 ~lGlsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aI 247 (656)
T PRK12898 170 ALGLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAI 247 (656)
T ss_pred hcCCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeE
Confidence 999999999999764 3444557789999998888 7777654221 135578999
Q ss_pred EeCccccc-cCC-----------------cH--------------------------------HHHHH------------
Q 007481 150 LDEADRLL-ELG-----------------FS--------------------------------AEIHE------------ 167 (602)
Q Consensus 150 lDEah~l~-~~g-----------------f~--------------------------------~~i~~------------ 167 (602)
|||+|.++ +.. +. ..+..
T Consensus 248 vDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~ 327 (656)
T PRK12898 248 VDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGA 327 (656)
T ss_pred eecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccc
Confidence 99999732 100 00 00000
Q ss_pred ------HHHh------CC-------------------------------------------------------------C
Q 007481 168 ------LVRL------CP-------------------------------------------------------------K 174 (602)
Q Consensus 168 ------i~~~------~~-------------------------------------------------------------~ 174 (602)
|... +. .
T Consensus 328 ~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~ 407 (656)
T PRK12898 328 VRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRR 407 (656)
T ss_pred hHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHh
Confidence 0000 00 0
Q ss_pred CcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhhc--CCCeEEEEeCc
Q 007481 175 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT--FTSKVIIFSGT 252 (602)
Q Consensus 175 ~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~--~~~kvIIF~~s 252 (602)
-..+.+||||.+....++...+..+++.+....+..+. ..+.++.+. ...+...+..++... .+.++||||+|
T Consensus 408 Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r~--~~~~~v~~t---~~~K~~aL~~~i~~~~~~~~pvLIft~t 482 (656)
T PRK12898 408 YLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRR--HLPDEVFLT---AAAKWAAVAARVRELHAQGRPVLVGTRS 482 (656)
T ss_pred hHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCccce--ecCCEEEeC---HHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 01567999999988888888888888776554433221 222233322 334555566655442 35789999999
Q ss_pred HHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcC---Ccc-----EEEEcCCCCCh
Q 007481 253 KQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII---GVQ-----TVINYACPRDL 324 (602)
Q Consensus 253 ~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip---~v~-----~VI~~d~p~s~ 324 (602)
+..++.++..|...|+++..|||.++ +|+..+..|..+...|+||||+++||+||+ +|. +||+|++|.|.
T Consensus 483 ~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~ 560 (656)
T PRK12898 483 VAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSA 560 (656)
T ss_pred HHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCH
Confidence 99999999999999999999999865 555556666666678999999999999999 666 99999999999
Q ss_pred hhHHHHhhhcccCCCcceEEEEEecCcHHH
Q 007481 325 TSYVHRVGRTARAGREGYAVTFVTDNDRSL 354 (602)
Q Consensus 325 ~~yiQriGRa~R~g~~g~~i~l~~~~d~~~ 354 (602)
..|+||+|||||+|..|.+++|++..|.-+
T Consensus 561 r~y~hr~GRTGRqG~~G~s~~~is~eD~l~ 590 (656)
T PRK12898 561 RIDRQLAGRCGRQGDPGSYEAILSLEDDLL 590 (656)
T ss_pred HHHHHhcccccCCCCCeEEEEEechhHHHH
Confidence 999999999999999999999999876444
No 60
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=6.3e-38 Score=344.00 Aligned_cols=305 Identities=15% Similarity=0.143 Sum_probs=219.8
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCC
Q 007481 18 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 97 (602)
Q Consensus 18 ~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~ 97 (602)
.-.|+|+|.++++.++.++++++++|||||||+++.. +...+... ...++||||||++|+.||.+.+..+.....
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~-l~~~~~~~----~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~ 186 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYL-LSRYYLEN----YEGKVLIIVPTTSLVTQMIDDFVDYRLFPR 186 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHH-HHHHHHhc----CCCeEEEEECcHHHHHHHHHHHHHhccccc
Confidence 4589999999999999999999999999999987543 22222222 123799999999999999999999876655
Q ss_pred ceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcc
Q 007481 98 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 177 (602)
Q Consensus 98 i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q 177 (602)
..+..+.+|.... ...+|+|+||+++.+.... .+.++++||+||||++.... +..++..+++.++
T Consensus 187 ~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~~----~~~~~~~iIvDEaH~~~~~~----~~~il~~~~~~~~ 251 (501)
T PHA02558 187 EAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPKE----WFDQFGMVIVDECHLFTGKS----LTSIITKLDNCKF 251 (501)
T ss_pred cceeEEecCcccC-------CCCCEEEeeHHHHhhchhh----hccccCEEEEEchhcccchh----HHHHHHhhhccce
Confidence 5565666664321 3579999999999764432 35788999999999997643 4566677777889
Q ss_pred eeeeeccCChhHHHHHH-HhcCCCeEEecCCCCCCC----CCceeeeeeec--h------------------hhhhhHHH
Q 007481 178 TMLFSATLTEDVDELIK-LSLTKPLRLSADPSAKRP----STLTEEVVRIR--R------------------MREVNQEA 232 (602)
Q Consensus 178 ~il~SAT~~~~~~~l~~-~~l~~p~~~~~~~~~~~~----~~l~~~~~~~~--~------------------~~~~~k~~ 232 (602)
+++|||||.+....... ..+-.|+...+....... ..+....+.+. . .....+..
T Consensus 252 ~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~ 331 (501)
T PHA02558 252 KFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNK 331 (501)
T ss_pred EEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHH
Confidence 99999999754321111 111122222211000000 00000000000 0 00011222
Q ss_pred HHHHHhhh--cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEc-CccccccCc
Q 007481 233 VLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT-DVAARGLDI 309 (602)
Q Consensus 233 ~l~~l~~~--~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT-~~~~~GlDi 309 (602)
.+..++.. ..+.++||||.+.++++.+++.|...|.++..+||++++.+|..+++.|++|...||||| +++++|+|+
T Consensus 332 ~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Di 411 (501)
T PHA02558 332 WIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISI 411 (501)
T ss_pred HHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccccc
Confidence 22222221 235689999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred CCccEEEEcCCCCChhhHHHHhhhcccCCCcce
Q 007481 310 IGVQTVINYACPRDLTSYVHRVGRTARAGREGY 342 (602)
Q Consensus 310 p~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~ 342 (602)
|++++||++.+|.|...|+||+||++|.+..+.
T Consensus 412 p~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~ 444 (501)
T PHA02558 412 KNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKS 444 (501)
T ss_pred ccccEEEEecCCcchhhhhhhhhccccCCCCCc
Confidence 999999999999999999999999999765543
No 61
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=6.2e-37 Score=347.89 Aligned_cols=308 Identities=18% Similarity=0.229 Sum_probs=233.8
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHH-HHhhcCCceEEE
Q 007481 24 IQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE-KIAQFTDIRCCL 102 (602)
Q Consensus 24 ~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~-~l~~~~~i~v~~ 102 (602)
+-.+.+..+..+.++|++|+||||||++|.+++++... .+++++|+.|+|++|.|+++.+. .+....+..|+.
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy 79 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGY 79 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEE
Confidence 33455666767899999999999999999999988752 23579999999999999999885 443445666666
Q ss_pred EECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcc-ccccCCcHH-HHHHHHHhCCCCcceee
Q 007481 103 VVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD-RLLELGFSA-EIHELVRLCPKRRQTML 180 (602)
Q Consensus 103 ~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah-~l~~~gf~~-~i~~i~~~~~~~~q~il 180 (602)
.+++.+ .....++|+|+|||+|++++.+ ...++.+++|||||+| ++++.+|.. .+..+...++...|+|+
T Consensus 80 ~vr~~~------~~s~~t~I~v~T~G~Llr~l~~--d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIl 151 (819)
T TIGR01970 80 RVRGEN------KVSRRTRLEVVTEGILTRMIQD--DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILA 151 (819)
T ss_pred EEcccc------ccCCCCcEEEECCcHHHHHHhh--CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEE
Confidence 665432 2345679999999999999986 3578999999999999 577766543 33556666788899999
Q ss_pred eeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhh--hHHHHHHHHhhhcCCCeEEEEeCcHHHHHH
Q 007481 181 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREV--NQEAVLLSLCSKTFTSKVIIFSGTKQAAHR 258 (602)
Q Consensus 181 ~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~ 258 (602)
||||++... ...++.++..+.+... ...+.+.+......... .....+..++.. ..+.+|||+++..+++.
T Consensus 152 mSATl~~~~---l~~~l~~~~vI~~~gr---~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~ 224 (819)
T TIGR01970 152 MSATLDGER---LSSLLPDAPVVESEGR---SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRR 224 (819)
T ss_pred EeCCCCHHH---HHHHcCCCcEEEecCc---ceeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHH
Confidence 999998654 2445544434443221 11233333332211100 011223333332 35789999999999999
Q ss_pred HHHHHhh---cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCCC-------------
Q 007481 259 LKILFGL---AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR------------- 322 (602)
Q Consensus 259 l~~~L~~---~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~------------- 322 (602)
+...|.. .++.+..|||+|++.+|..+++.|.+|..+||||||++++|||||+|++||++++|.
T Consensus 225 l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L 304 (819)
T TIGR01970 225 VQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRL 304 (819)
T ss_pred HHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCcee
Confidence 9999986 478899999999999999999999999999999999999999999999999999885
Q ss_pred -----ChhhHHHHhhhcccCCCcceEEEEEecCcHH
Q 007481 323 -----DLTSYVHRVGRTARAGREGYAVTFVTDNDRS 353 (602)
Q Consensus 323 -----s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~ 353 (602)
|..+|+||.||+||. ..|.||.|+++.+..
T Consensus 305 ~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 305 ETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred eEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 335699999999997 799999999886544
No 62
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=6.8e-36 Score=333.61 Aligned_cols=321 Identities=20% Similarity=0.246 Sum_probs=239.0
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 15 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 15 ~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
.+|+ .|+++|..+++.++.|+ |+.+.||+|||++|.+|++...+. +..|+|++||++||.|.++++..+..
T Consensus 74 ~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~------G~~v~VvTpt~~LA~qd~e~~~~l~~ 144 (790)
T PRK09200 74 VLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE------GKGVHLITVNDYLAKRDAEEMGQVYE 144 (790)
T ss_pred HhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc------CCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 4576 79999999999998887 999999999999999999866653 44699999999999999999999999
Q ss_pred cCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHH-HHHHHccCC-----CCCCCcceEEEeCccccc-cCC-------
Q 007481 95 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMS-----VDLDDLAVLILDEADRLL-ELG------- 160 (602)
Q Consensus 95 ~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L-~~~l~~~~~-----~~l~~l~llVlDEah~l~-~~g------- 160 (602)
+.++++++++|+.+...+.. ....++|+++||++| .|+|+.... ..+..+.++||||||.|+ +..
T Consensus 145 ~lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliis 223 (790)
T PRK09200 145 FLGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIIS 223 (790)
T ss_pred hcCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeee
Confidence 99999999999988333333 335689999999999 777765321 346788999999999843 100
Q ss_pred --------cHHHHHHHHHhCC-----------------------------------------------------------
Q 007481 161 --------FSAEIHELVRLCP----------------------------------------------------------- 173 (602)
Q Consensus 161 --------f~~~i~~i~~~~~----------------------------------------------------------- 173 (602)
+...+..+...+.
T Consensus 224 g~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~ 303 (790)
T PRK09200 224 GKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDV 303 (790)
T ss_pred CCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCC
Confidence 0000001110000
Q ss_pred ------------------------------------------C----------------CcceeeeeccCChhHHHHHHH
Q 007481 174 ------------------------------------------K----------------RRQTMLFSATLTEDVDELIKL 195 (602)
Q Consensus 174 ------------------------------------------~----------------~~q~il~SAT~~~~~~~l~~~ 195 (602)
+ -..+.+||+|......++...
T Consensus 304 dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~ 383 (790)
T PRK09200 304 DYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEV 383 (790)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHH
Confidence 0 013567777765555555443
Q ss_pred hcCCCeEEecCCCCCCCCCcee--eeeeechhhhhhHHHHHHHHhhh--cCCCeEEEEeCcHHHHHHHHHHHhhcCCcee
Q 007481 196 SLTKPLRLSADPSAKRPSTLTE--EVVRIRRMREVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAA 271 (602)
Q Consensus 196 ~l~~p~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~k~~~l~~l~~~--~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~ 271 (602)
+-...+.+ ++. .|..... ..+.. ....+...+...+.. ..+.++||||+|+..++.++..|...|+++.
T Consensus 384 Y~l~v~~I---Pt~-kp~~r~d~~~~i~~---~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~ 456 (790)
T PRK09200 384 YNMEVVQI---PTN-RPIIRIDYPDKVFV---TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHN 456 (790)
T ss_pred hCCcEEEC---CCC-CCcccccCCCeEEc---CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEE
Confidence 32222222 221 1211111 11211 223455555555543 3577999999999999999999999999999
Q ss_pred eccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCc---CCcc-----EEEEcCCCCChhhHHHHhhhcccCCCcceE
Q 007481 272 ELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI---IGVQ-----TVINYACPRDLTSYVHRVGRTARAGREGYA 343 (602)
Q Consensus 272 ~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDi---p~v~-----~VI~~d~p~s~~~yiQriGRa~R~g~~g~~ 343 (602)
.|||.+.+.++..+...+..| .|+|||++++||+|| |+|. +||+|++|.|...|+||+|||||.|.+|.+
T Consensus 457 ~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s 534 (790)
T PRK09200 457 LLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSS 534 (790)
T ss_pred EecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeE
Confidence 999999999888888887766 799999999999999 6998 999999999999999999999999999999
Q ss_pred EEEEecCcHHH
Q 007481 344 VTFVTDNDRSL 354 (602)
Q Consensus 344 i~l~~~~d~~~ 354 (602)
++|++..|.-+
T Consensus 535 ~~~is~eD~l~ 545 (790)
T PRK09200 535 QFFISLEDDLL 545 (790)
T ss_pred EEEEcchHHHH
Confidence 99999876544
No 63
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.8e-38 Score=349.52 Aligned_cols=317 Identities=17% Similarity=0.192 Sum_probs=220.8
Q ss_pred CCCcHHHHHHHHHHhc-C--CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhc
Q 007481 19 SKPTPIQAACIPLALT-G--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 95 (602)
Q Consensus 19 ~~pt~~Q~~~i~~~l~-g--~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~ 95 (602)
..|+|||.+++..++. | +..++++|||+|||++.+ .++..+. .++|||||+.+|+.||.+.|..|+..
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai-~aa~~l~--------k~tLILvps~~Lv~QW~~ef~~~~~l 324 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV-TAACTVK--------KSCLVLCTSAVSVEQWKQQFKMWSTI 324 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHH-HHHHHhC--------CCEEEEeCcHHHHHHHHHHHHHhcCC
Confidence 4689999999999885 3 478999999999999864 4444431 24999999999999999999998766
Q ss_pred CCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHcc-------CCCCCCCcceEEEeCccccccCCcHHHHHHH
Q 007481 96 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS-------MSVDLDDLAVLILDEADRLLELGFSAEIHEL 168 (602)
Q Consensus 96 ~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~-------~~~~l~~l~llVlDEah~l~~~gf~~~i~~i 168 (602)
....+..++|+.... .....+|+|+|+..+.....+. ..+.-..|++||+||||++....|.. +
T Consensus 325 ~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~fr~----i 395 (732)
T TIGR00603 325 DDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAMFRR----V 395 (732)
T ss_pred CCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHHHHH----H
Confidence 566777777753221 1234689999998775322111 01223568899999999997654444 4
Q ss_pred HHhCCCCcceeeeeccCChhHHHHHH-HhcCCCeEEecCCC------CCCCCCceeeeeeechh----------------
Q 007481 169 VRLCPKRRQTMLFSATLTEDVDELIK-LSLTKPLRLSADPS------AKRPSTLTEEVVRIRRM---------------- 225 (602)
Q Consensus 169 ~~~~~~~~q~il~SAT~~~~~~~l~~-~~l~~p~~~~~~~~------~~~~~~l~~~~~~~~~~---------------- 225 (602)
+..+. ....+++||||..+-..... ..+-.|..+..... ...+..+.. +++.-.
T Consensus 396 l~~l~-a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~e--v~v~~t~~~~~~yl~~~~~~k~ 472 (732)
T TIGR00603 396 LTIVQ-AHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAE--VWCPMTPEFYREYLRENSRKRM 472 (732)
T ss_pred HHhcC-cCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEE--EEecCCHHHHHHHHHhcchhhh
Confidence 43333 34569999999743221111 11122333332110 000000000 111100
Q ss_pred ----hhhhHHHHHHHHhhh--cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC-CceEEE
Q 007481 226 ----REVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ-HVDFLI 298 (602)
Q Consensus 226 ----~~~~k~~~l~~l~~~--~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g-~~~iLV 298 (602)
....+...+..++.. ..+.++||||.+...++.++..|. +..+||++++.+|..+++.|+.| .+++||
T Consensus 473 ~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv 547 (732)
T TIGR00603 473 LLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIF 547 (732)
T ss_pred HHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEE
Confidence 001122233333433 367899999999999999988873 45799999999999999999975 889999
Q ss_pred EcCccccccCcCCccEEEEcCCCC-ChhhHHHHhhhcccCCCcce-------EEEEEecCcHHHHHHHHHH
Q 007481 299 ATDVAARGLDIIGVQTVINYACPR-DLTSYVHRVGRTARAGREGY-------AVTFVTDNDRSLLKAIAKR 361 (602)
Q Consensus 299 aT~~~~~GlDip~v~~VI~~d~p~-s~~~yiQriGRa~R~g~~g~-------~i~l~~~~d~~~l~~i~~~ 361 (602)
+|+++++|||+|++++||+++.|. |..+|+||+||++|.+..|. .|+|++.++.++..+-.++
T Consensus 548 ~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq 618 (732)
T TIGR00603 548 LSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQ 618 (732)
T ss_pred EecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHH
Confidence 999999999999999999999985 99999999999999875544 4999999998877665554
No 64
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.8e-36 Score=344.99 Aligned_cols=306 Identities=17% Similarity=0.221 Sum_probs=231.5
Q ss_pred HHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHH-HhhcCCceEEEEE
Q 007481 26 AACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK-IAQFTDIRCCLVV 104 (602)
Q Consensus 26 ~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~-l~~~~~i~v~~~~ 104 (602)
.+.+..+.+++++|+.|+||||||++|.+++++... ...+++|++|||++|.|+++.+.. +....+..|+..+
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~v 84 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRM 84 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEe
Confidence 355666667899999999999999999998887532 224799999999999999998854 4444677777777
Q ss_pred CCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccc-cccCCc-HHHHHHHHHhCCCCcceeeee
Q 007481 105 GGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR-LLELGF-SAEIHELVRLCPKRRQTMLFS 182 (602)
Q Consensus 105 g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~-l~~~gf-~~~i~~i~~~~~~~~q~il~S 182 (602)
++.+. ......|+|+|||+|++++.+ ...++.+++|||||+|. .++..+ ...+..++..++...|+++||
T Consensus 85 r~~~~------~~~~t~I~v~T~G~Llr~l~~--d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmS 156 (812)
T PRK11664 85 RAESK------VGPNTRLEVVTEGILTRMIQR--DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMS 156 (812)
T ss_pred cCccc------cCCCCcEEEEChhHHHHHHhh--CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEe
Confidence 76432 234568999999999999886 45789999999999996 455433 233455667778889999999
Q ss_pred ccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhh--HHHHHHHHhhhcCCCeEEEEeCcHHHHHHHH
Q 007481 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN--QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLK 260 (602)
Q Consensus 183 AT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~ 260 (602)
||++... + ..++.++..+.+... ...+.+.++......... -...+..++. ...+.+|||+++...++.++
T Consensus 157 ATl~~~~--l-~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~-~~~g~iLVFlpg~~ei~~l~ 229 (812)
T PRK11664 157 ATLDNDR--L-QQLLPDAPVIVSEGR---SFPVERRYQPLPAHQRFDEAVARATAELLR-QESGSLLLFLPGVGEIQRVQ 229 (812)
T ss_pred cCCCHHH--H-HHhcCCCCEEEecCc---cccceEEeccCchhhhHHHHHHHHHHHHHH-hCCCCEEEEcCCHHHHHHHH
Confidence 9998652 2 345554444443322 122344443332111100 0112333332 23688999999999999999
Q ss_pred HHHhh---cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCCC---------------
Q 007481 261 ILFGL---AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR--------------- 322 (602)
Q Consensus 261 ~~L~~---~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~--------------- 322 (602)
..|.. .++.+..+||++++.+|..++..|.+|..+||||||++++|||||+|++||+++++.
T Consensus 230 ~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~ 309 (812)
T PRK11664 230 EQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVT 309 (812)
T ss_pred HHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEE
Confidence 99986 578899999999999999999999999999999999999999999999999988764
Q ss_pred ---ChhhHHHHhhhcccCCCcceEEEEEecCcHH
Q 007481 323 ---DLTSYVHRVGRTARAGREGYAVTFVTDNDRS 353 (602)
Q Consensus 323 ---s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~ 353 (602)
|..+|+||.||+||. ..|.||.|+++.+..
T Consensus 310 ~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 310 QRISQASMTQRAGRAGRL-EPGICLHLYSKEQAE 342 (812)
T ss_pred EeechhhhhhhccccCCC-CCcEEEEecCHHHHh
Confidence 335899999999997 699999999976543
No 65
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=5.1e-35 Score=323.59 Aligned_cols=321 Identities=18% Similarity=0.176 Sum_probs=226.7
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 15 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 15 ~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
.+|. .|++.| ++..+...++.|+.++||+|||++|.+|++...+.. ..++||+|+++||.|+++++..+..
T Consensus 66 ~lgl-rpydVQ--lig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g------~~V~VVTpn~yLA~Rdae~m~~l~~ 136 (762)
T TIGR03714 66 VLGM-FPYDVQ--VLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTG------KGAMLVTTNDYLAKRDAEEMGPVYE 136 (762)
T ss_pred hcCC-CccHHH--HHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcC------CceEEeCCCHHHHHHHHHHHHHHHh
Confidence 3454 455555 554444444579999999999999999988766543 3599999999999999999999999
Q ss_pred cCCceEEEEECCCC---HHHHHHHHcCCCcEEEECcHHH-HHHHHcc-----CCCCCCCcceEEEeCccccccCC-----
Q 007481 95 FTDIRCCLVVGGLS---TKMQETALRSMPDIVVATPGRM-IDHLRNS-----MSVDLDDLAVLILDEADRLLELG----- 160 (602)
Q Consensus 95 ~~~i~v~~~~g~~~---~~~~~~~l~~~~~IvI~Tp~~L-~~~l~~~-----~~~~l~~l~llVlDEah~l~~~g----- 160 (602)
+.++++.+++++.. ...........++|+++||++| .++|+.. ....+..+.++||||||.|+-..
T Consensus 137 ~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpl 216 (762)
T TIGR03714 137 WLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPL 216 (762)
T ss_pred hcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCe
Confidence 99999998887622 2222333446799999999999 6776542 12346788999999999853210
Q ss_pred -----------cHHHHHHHHHhCC--------------------------------------------------------
Q 007481 161 -----------FSAEIHELVRLCP-------------------------------------------------------- 173 (602)
Q Consensus 161 -----------f~~~i~~i~~~~~-------------------------------------------------------- 173 (602)
+...+..+...+.
T Consensus 217 iisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~ 296 (762)
T TIGR03714 217 VISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFK 296 (762)
T ss_pred eeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHh
Confidence 0000001111000
Q ss_pred -------------------------------------------------------------CCcceeeeeccCChhHHHH
Q 007481 174 -------------------------------------------------------------KRRQTMLFSATLTEDVDEL 192 (602)
Q Consensus 174 -------------------------------------------------------------~~~q~il~SAT~~~~~~~l 192 (602)
.-..+.+||+|......++
T Consensus 297 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef 376 (762)
T TIGR03714 297 RNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEF 376 (762)
T ss_pred cCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHH
Confidence 0014567777766555555
Q ss_pred HHHhcCCCeEEecCCCCCCCCCceee--eeeechhhhhhHHHHHHHHhhh--cCCCeEEEEeCcHHHHHHHHHHHhhcCC
Q 007481 193 IKLSLTKPLRLSADPSAKRPSTLTEE--VVRIRRMREVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAAL 268 (602)
Q Consensus 193 ~~~~l~~p~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~k~~~l~~l~~~--~~~~kvIIF~~s~~~a~~l~~~L~~~g~ 268 (602)
...+-...+.+ ++. .|...... .+.. ....+...+...+.. ..+.++||||+|+..++.++..|...|+
T Consensus 377 ~~iY~l~v~~I---Pt~-kp~~r~d~~d~i~~---~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi 449 (762)
T TIGR03714 377 IETYSLSVVKI---PTN-KPIIRIDYPDKIYA---TLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGI 449 (762)
T ss_pred HHHhCCCEEEc---CCC-CCeeeeeCCCeEEE---CHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCC
Confidence 54332222211 111 11111111 1222 223344445544433 4567999999999999999999999999
Q ss_pred ceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcC---------CccEEEEcCCCCChhhHHHHhhhcccCCC
Q 007481 269 KAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII---------GVQTVINYACPRDLTSYVHRVGRTARAGR 339 (602)
Q Consensus 269 ~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip---------~v~~VI~~d~p~s~~~yiQriGRa~R~g~ 339 (602)
++..|||.+.+.++..+...|+.| .|+|||++++||+||+ ++++|++|++|..... +||+|||||+|.
T Consensus 450 ~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~ 526 (762)
T TIGR03714 450 PHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGD 526 (762)
T ss_pred CEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCC
Confidence 999999999999988887777666 7999999999999999 9999999999977655 999999999999
Q ss_pred cceEEEEEecCcHHH
Q 007481 340 EGYAVTFVTDNDRSL 354 (602)
Q Consensus 340 ~g~~i~l~~~~d~~~ 354 (602)
+|.+++|++..|.-+
T Consensus 527 ~G~s~~~is~eD~l~ 541 (762)
T TIGR03714 527 PGSSQFFVSLEDDLI 541 (762)
T ss_pred ceeEEEEEccchhhh
Confidence 999999999876544
No 66
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.6e-36 Score=319.35 Aligned_cols=302 Identities=23% Similarity=0.207 Sum_probs=207.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHH------
Q 007481 37 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK------ 110 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~------ 110 (602)
++++.||||||||.+|++|++..+... .+.+++|++|+++|+.|+++.+..+.. ..+..++++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~----~~~~ii~v~P~~~L~~q~~~~l~~~f~---~~~~~~~~~~~~~~~~~~~ 73 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ----KADRVIIALPTRATINAMYRRAKELFG---SNLGLLHSSSSFKRIKEMG 73 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC----CCCeEEEEeehHHHHHHHHHHHHHHhC---cccEEeeccHHHHHHhccC
Confidence 589999999999999999999876533 345899999999999999999998643 2344445432210
Q ss_pred ------HHHHHH------cCCCcEEEECcHHHHHHHHccCC---CCC--CCcceEEEeCccccccCCcHHHHHHHHHhCC
Q 007481 111 ------MQETAL------RSMPDIVVATPGRMIDHLRNSMS---VDL--DDLAVLILDEADRLLELGFSAEIHELVRLCP 173 (602)
Q Consensus 111 ------~~~~~l------~~~~~IvI~Tp~~L~~~l~~~~~---~~l--~~l~llVlDEah~l~~~gf~~~i~~i~~~~~ 173 (602)
...... ...++|+|+||+.++..+..... +.+ -..++|||||||.+.+.++.. +..++..++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~ 152 (358)
T TIGR01587 74 DSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLK 152 (358)
T ss_pred CchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHH
Confidence 001111 12367999999999987765211 111 123789999999998865443 445544443
Q ss_pred -CCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhh-cCCCeEEEEeC
Q 007481 174 -KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK-TFTSKVIIFSG 251 (602)
Q Consensus 174 -~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~-~~~~kvIIF~~ 251 (602)
...|+++||||+|+.+.++.......+........... ....+.+..+.. ....+...+..++.. ..++++||||+
T Consensus 153 ~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~lVf~~ 230 (358)
T TIGR01587 153 DNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEER-RFERHRFIKIES-DKVGEISSLERLLEFIKKGGKIAIIVN 230 (358)
T ss_pred HcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcccc-ccccccceeecc-ccccCHHHHHHHHHHhhCCCeEEEEEC
Confidence 46899999999997777666544332211111110000 001122211111 111222333333332 34679999999
Q ss_pred cHHHHHHHHHHHhhcCC--ceeeccCCCCHHHHHH----HHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCCCChh
Q 007481 252 TKQAAHRLKILFGLAAL--KAAELHGNLTQAQRLE----ALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLT 325 (602)
Q Consensus 252 s~~~a~~l~~~L~~~g~--~~~~lhg~~~~~eR~~----il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~ 325 (602)
|++.++.++..|...+. .+..+||++++.+|.. +++.|++|...|||||+++++|+|++ +++||++..| ..
T Consensus 231 t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~ 307 (358)
T TIGR01587 231 TVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--ID 307 (358)
T ss_pred CHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HH
Confidence 99999999999987766 5899999999999976 48999999999999999999999995 8899998877 78
Q ss_pred hHHHHhhhcccCCCc----ceEEEEEecCc
Q 007481 326 SYVHRVGRTARAGRE----GYAVTFVTDND 351 (602)
Q Consensus 326 ~yiQriGRa~R~g~~----g~~i~l~~~~d 351 (602)
+|+||+||+||.|+. |.++++....+
T Consensus 308 ~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 308 SLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 999999999998753 36777765543
No 67
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=5.1e-36 Score=325.20 Aligned_cols=330 Identities=24% Similarity=0.307 Sum_probs=237.5
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcC
Q 007481 17 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 96 (602)
Q Consensus 17 g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~ 96 (602)
..-.+++||.+.+..+| |+|+||++|||+|||.++...++.++.+.+. .++|+++|++.|+.|....+..++..
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~----~KiVF~aP~~pLv~QQ~a~~~~~~~~- 132 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK----GKVVFLAPTRPLVNQQIACFSIYLIP- 132 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc----ceEEEeeCCchHHHHHHHHHhhccCc-
Confidence 44578999999999999 9999999999999999998889988877654 58999999999999988667666433
Q ss_pred CceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccc-cCCcHHHHHHHHHhCCCC
Q 007481 97 DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKR 175 (602)
Q Consensus 97 ~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~-~~gf~~~i~~i~~~~~~~ 175 (602)
..+....||.........+....+|+|+||+.|.+-|.+.....|+.+.+|||||||+-. +..|...+..++..-...
T Consensus 133 -~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~ 211 (746)
T KOG0354|consen 133 -YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQG 211 (746)
T ss_pred -ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhcc
Confidence 455666666444444446677889999999999999887655557899999999999976 444667777777766666
Q ss_pred cceeeeeccCChhHHHHHHHhcCC-------------------------CeEE---------------------------
Q 007481 176 RQTMLFSATLTEDVDELIKLSLTK-------------------------PLRL--------------------------- 203 (602)
Q Consensus 176 ~q~il~SAT~~~~~~~l~~~~l~~-------------------------p~~~--------------------------- 203 (602)
.|++++||||..+.........+- |+-+
T Consensus 212 ~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l 291 (746)
T KOG0354|consen 212 NQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGL 291 (746)
T ss_pred ccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCc
Confidence 799999999975544331110000 0000
Q ss_pred ---e---------cC-CCCCCCCCc---------------------eeeeeee----------------c----------
Q 007481 204 ---S---------AD-PSAKRPSTL---------------------TEEVVRI----------------R---------- 223 (602)
Q Consensus 204 ---~---------~~-~~~~~~~~l---------------------~~~~~~~----------------~---------- 223 (602)
. +. ......++. ....+++ .
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~ 371 (746)
T KOG0354|consen 292 IEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEAR 371 (746)
T ss_pred cccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcch
Confidence 0 00 000000000 0000000 0
Q ss_pred ------------------hhhhhhHHH----HHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhh---cCCceeeccC---
Q 007481 224 ------------------RMREVNQEA----VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL---AALKAAELHG--- 275 (602)
Q Consensus 224 ------------------~~~~~~k~~----~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~---~g~~~~~lhg--- 275 (602)
+..+..+.. ++..........++||||.++..|+.|..+|.. .|+.+..+-|
T Consensus 372 ~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~ 451 (746)
T KOG0354|consen 372 LIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGK 451 (746)
T ss_pred hhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccc
Confidence 000011111 122222334457999999999999999999882 2444444433
Q ss_pred -----CCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecC
Q 007481 276 -----NLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 350 (602)
Q Consensus 276 -----~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~ 350 (602)
+|++.++.++++.|++|+++|||||+++++||||++|++||-||+-.|+..++||.|| ||+ +.|.++++++..
T Consensus 452 s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~ 529 (746)
T KOG0354|consen 452 STQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGS 529 (746)
T ss_pred cccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcch
Confidence 7999999999999999999999999999999999999999999999999999999999 995 688988888854
Q ss_pred cHHHH
Q 007481 351 DRSLL 355 (602)
Q Consensus 351 d~~~l 355 (602)
+....
T Consensus 530 ~~~~~ 534 (746)
T KOG0354|consen 530 EVIEF 534 (746)
T ss_pred hHHHH
Confidence 43333
No 68
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=3.3e-35 Score=340.35 Aligned_cols=329 Identities=25% Similarity=0.318 Sum_probs=240.9
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcC
Q 007481 17 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 96 (602)
Q Consensus 17 g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~ 96 (602)
+.-.|++||.+++..++.+ |+++++|||+|||+++++++...+. . .+.++|||+||++|+.|+.+.+..+....
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~-~----~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~ 85 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH-K----KGGKVLILAPTKPLVEQHAEFFRKFLNIP 85 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH-h----CCCeEEEEeCcHHHHHHHHHHHHHHhCCC
Confidence 5568999999999999887 9999999999999999888887763 2 34579999999999999999999876555
Q ss_pred CceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCCCc
Q 007481 97 DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 176 (602)
Q Consensus 97 ~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~ 176 (602)
+..+..++|+.+... ...+...++|+|+||+.+...+... .+.+.++++|||||||++.+......+..........+
T Consensus 86 ~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~ 163 (773)
T PRK13766 86 EEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAG-RISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNP 163 (773)
T ss_pred CceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcC-CCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCC
Confidence 567888888877653 3445567899999999998877653 56788999999999999876543334444444445567
Q ss_pred ceeeeeccCChhHHHH---HHHhcCCCeEEecCCCC--------------------------------------------
Q 007481 177 QTMLFSATLTEDVDEL---IKLSLTKPLRLSADPSA-------------------------------------------- 209 (602)
Q Consensus 177 q~il~SAT~~~~~~~l---~~~~l~~p~~~~~~~~~-------------------------------------------- 209 (602)
++++|||||......+ ........+.+......
T Consensus 164 ~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~ 243 (773)
T PRK13766 164 LVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELG 243 (773)
T ss_pred EEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 8999999985443222 11111011100000000
Q ss_pred CC-CCC--c------------eeeeee-----------------ec----------------------h-----------
Q 007481 210 KR-PST--L------------TEEVVR-----------------IR----------------------R----------- 224 (602)
Q Consensus 210 ~~-~~~--l------------~~~~~~-----------------~~----------------------~----------- 224 (602)
.. +.. + ...+.. +. .
T Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~ 323 (773)
T PRK13766 244 VIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKAS 323 (773)
T ss_pred CcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHH
Confidence 00 000 0 000000 00 0
Q ss_pred -------------------hhhhhHHHHHHHHhhh----cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCC-----
Q 007481 225 -------------------MREVNQEAVLLSLCSK----TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGN----- 276 (602)
Q Consensus 225 -------------------~~~~~k~~~l~~l~~~----~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~----- 276 (602)
.....+...|..++.. ..+.++||||.+...++.+..+|...|+.+..+||.
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~ 403 (773)
T PRK13766 324 KRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDG 403 (773)
T ss_pred HHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccc
Confidence 0000112222223322 456899999999999999999999999999999886
Q ss_pred ---CCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHH
Q 007481 277 ---LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 353 (602)
Q Consensus 277 ---~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~ 353 (602)
+++.+|..++.+|++|++++||||+++++|+|+|+|++||+||+|+|+..|+||+||+||.| .|.+++++..++.+
T Consensus 404 ~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~t~e 482 (773)
T PRK13766 404 DKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKGTRD 482 (773)
T ss_pred cCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCCChH
Confidence 99999999999999999999999999999999999999999999999999999999999965 58999999887654
Q ss_pred H
Q 007481 354 L 354 (602)
Q Consensus 354 ~ 354 (602)
.
T Consensus 483 e 483 (773)
T PRK13766 483 E 483 (773)
T ss_pred H
Confidence 3
No 69
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=8.1e-35 Score=320.03 Aligned_cols=323 Identities=20% Similarity=0.204 Sum_probs=240.2
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 15 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 15 ~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
.+|+ .|+++|..+.+.++.|+ |+.++||+|||++|.+|++-..+. +..|+|++||++||.|.++++..+..
T Consensus 52 ~lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~------G~~V~VvTpt~~LA~qdae~~~~l~~ 122 (745)
T TIGR00963 52 VLGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT------GKGVHVVTVNDYLAQRDAEWMGQVYR 122 (745)
T ss_pred HhCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh------CCCEEEEcCCHHHHHHHHHHHHHHhc
Confidence 4564 59999999999988876 999999999999999999644443 23599999999999999999999999
Q ss_pred cCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHH-HHHHHccC-----CCCCCCcceEEEeCccccccC---------
Q 007481 95 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLDDLAVLILDEADRLLEL--------- 159 (602)
Q Consensus 95 ~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L-~~~l~~~~-----~~~l~~l~llVlDEah~l~~~--------- 159 (602)
+.++++++++|+.+....... ..++|+++||++| +|+++... .+.+..+.++||||+|.|+=.
T Consensus 123 ~LGLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiis 200 (745)
T TIGR00963 123 FLGLSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIIS 200 (745)
T ss_pred cCCCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhc
Confidence 999999999999886544443 3579999999999 99998753 245788999999999984310
Q ss_pred C----c---H--------------------------------HHHHHH------------------HHh------CC---
Q 007481 160 G----F---S--------------------------------AEIHEL------------------VRL------CP--- 173 (602)
Q Consensus 160 g----f---~--------------------------------~~i~~i------------------~~~------~~--- 173 (602)
| . . ..++.+ ... +.
T Consensus 201 g~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~ 280 (745)
T TIGR00963 201 GPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDV 280 (745)
T ss_pred CCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCC
Confidence 0 0 0 000000 000 00
Q ss_pred ----------------------------------------------------------CCcceeeeeccCChhHHHHHHH
Q 007481 174 ----------------------------------------------------------KRRQTMLFSATLTEDVDELIKL 195 (602)
Q Consensus 174 ----------------------------------------------------------~~~q~il~SAT~~~~~~~l~~~ 195 (602)
.-..+.+||+|......++...
T Consensus 281 dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~i 360 (745)
T TIGR00963 281 DYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKI 360 (745)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHH
Confidence 0013567777776655555544
Q ss_pred hcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHh-h-hcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeec
Q 007481 196 SLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC-S-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAEL 273 (602)
Q Consensus 196 ~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~-~-~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~l 273 (602)
+-...+.+... .|......-..+.. ....+...+...+ . ...+.++||||+|+..++.++..|...|+++..|
T Consensus 361 Y~l~vv~IPtn----kp~~R~d~~d~i~~-t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~L 435 (745)
T TIGR00963 361 YNLEVVVVPTN----RPVIRKDLSDLVYK-TEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVL 435 (745)
T ss_pred hCCCEEEeCCC----CCeeeeeCCCeEEc-CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEe
Confidence 43333322221 11111111111111 1222333333322 2 2357899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCC-------ccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEE
Q 007481 274 HGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG-------VQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 346 (602)
Q Consensus 274 hg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~-------v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l 346 (602)
|+. +.+|+..+..|..+...|+|||++++||+||+. ..+||+++.|.|...|.|++|||||.|.+|.+.+|
T Consensus 436 na~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ 513 (745)
T TIGR00963 436 NAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFF 513 (745)
T ss_pred eCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEE
Confidence 998 889999999999999999999999999999988 55999999999999999999999999999999999
Q ss_pred EecCcHHHH
Q 007481 347 VTDNDRSLL 355 (602)
Q Consensus 347 ~~~~d~~~l 355 (602)
++..|.-+.
T Consensus 514 ls~eD~l~~ 522 (745)
T TIGR00963 514 LSLEDNLMR 522 (745)
T ss_pred EeccHHHHH
Confidence 999876554
No 70
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=6.3e-36 Score=308.99 Aligned_cols=334 Identities=24% Similarity=0.292 Sum_probs=271.7
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPL-ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 80 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~-~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~ 80 (602)
+|.+++.+.+-|...|++.+.|.|.-|+.. ++.|.|.++..+|+||||++.-++-+.+++... .+.|+|+|..+
T Consensus 198 eLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g-----~KmlfLvPLVA 272 (830)
T COG1202 198 ELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGG-----KKMLFLVPLVA 272 (830)
T ss_pred ccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCC-----CeEEEEehhHH
Confidence 688999999999999999999999999976 567999999999999999998888888888643 36999999999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEECCCCHHHHH----HHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccc
Q 007481 81 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE----TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 156 (602)
Q Consensus 81 La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~----~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l 156 (602)
||.|-|+.|+.-....++.+.+-+|-....... ......+||||+|++-+-.+++.. -.+.++..+||||+|.+
T Consensus 273 LANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg--~~lgdiGtVVIDEiHtL 350 (830)
T COG1202 273 LANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG--KDLGDIGTVVIDEIHTL 350 (830)
T ss_pred hhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC--CcccccceEEeeeeeec
Confidence 999999999887777888888888865443322 223455799999999987777763 67899999999999988
Q ss_pred ccCCcH---HHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHH
Q 007481 157 LELGFS---AEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV 233 (602)
Q Consensus 157 ~~~gf~---~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~ 233 (602)
-+..-. +.+..-++.+-+..|+|++|||..+. .+++...-..++.+. .+|..+..+++.+.. +..+..+
T Consensus 351 ~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~-----~RPVplErHlvf~~~--e~eK~~i 422 (830)
T COG1202 351 EDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYD-----ERPVPLERHLVFARN--ESEKWDI 422 (830)
T ss_pred cchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeec-----CCCCChhHeeeeecC--chHHHHH
Confidence 764433 33333345555689999999999744 556666655666554 367777777777663 3444555
Q ss_pred HHHHhh--------hcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcccc
Q 007481 234 LLSLCS--------KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAAR 305 (602)
Q Consensus 234 l~~l~~--------~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~ 305 (602)
+..+++ ..+.+++|||++|+..|+.++.+|...|+++..+|++++..+|..+...|.++++.++|+|-+++-
T Consensus 423 i~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~A 502 (830)
T COG1202 423 IARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAA 502 (830)
T ss_pred HHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhc
Confidence 555554 334689999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCCccEEE---EcCCCC-ChhhHHHHhhhcccCCC--cceEEEEEecC
Q 007481 306 GLDIIGVQTVI---NYACPR-DLTSYVHRVGRTARAGR--EGYAVTFVTDN 350 (602)
Q Consensus 306 GlDip~v~~VI---~~d~p~-s~~~yiQriGRa~R~g~--~g~~i~l~~~~ 350 (602)
|+|+|.-.+|+ -.+..| |+..|.||.|||||.+. .|.+|+++.+.
T Consensus 503 GVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 503 GVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred CCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 99999877665 234444 89999999999999774 59999998775
No 71
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.1e-36 Score=308.51 Aligned_cols=264 Identities=19% Similarity=0.247 Sum_probs=212.4
Q ss_pred CCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhh-hcCCCeEEEEeCc
Q 007481 174 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS-KTFTSKVIIFSGT 252 (602)
Q Consensus 174 ~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~-~~~~~kvIIF~~s 252 (602)
..+|+|++||||.+...+..... .+ ....+|+++.++.+.+++......+. +..+.. ...+.++||.+-|
T Consensus 385 ~~~q~i~VSATPg~~E~e~s~~~---vv-----eQiIRPTGLlDP~ievRp~~~QvdDL-~~EI~~r~~~~eRvLVTtLT 455 (663)
T COG0556 385 KIPQTIYVSATPGDYELEQSGGN---VV-----EQIIRPTGLLDPEIEVRPTKGQVDDL-LSEIRKRVAKNERVLVTTLT 455 (663)
T ss_pred hcCCEEEEECCCChHHHHhccCc---ee-----EEeecCCCCCCCceeeecCCCcHHHH-HHHHHHHHhcCCeEEEEeeh
Confidence 45799999999987765544311 11 12248899999999999866554433 333332 4556899999999
Q ss_pred HHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCCC-----ChhhH
Q 007481 253 KQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR-----DLTSY 327 (602)
Q Consensus 253 ~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~-----s~~~y 327 (602)
+++|+.|.++|.+.|+++.++|+++..-+|.+++.+++.|.++|||+.+++.+|||+|.|++|.++|+.. |..+.
T Consensus 456 KkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SL 535 (663)
T COG0556 456 KKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSL 535 (663)
T ss_pred HHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998765 99999
Q ss_pred HHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-H
Q 007481 328 VHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEERE-ERILR-K 405 (602)
Q Consensus 328 iQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~-~~~~~-~ 405 (602)
+|.+|||+| +-+|.+|++.+.-+.+|-++|.+..+.+-++..++..+...+.+..+.+.+.+......... ..... .
T Consensus 536 IQtIGRAAR-N~~GkvIlYAD~iT~sM~~Ai~ET~RRR~iQ~~yN~~hgItP~ti~K~i~d~l~~~~~~~~~~~~~~~~~ 614 (663)
T COG0556 536 IQTIGRAAR-NVNGKVILYADKITDSMQKAIDETERRREIQMAYNEEHGITPQTIKKKIRDILDGEYEEDEYKAKIEKKA 614 (663)
T ss_pred HHHHHHHhh-ccCCeEEEEchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhhhhhhhhhhhhhhccccc
Confidence 999999999 78999999999999999999999988888888899988888888888777766543322111 11111 1
Q ss_pred HHHHHHHHHHHHHhHHHHhcCccccc-cccHHHHHHHHHHhHHHHHc
Q 007481 406 AEMEATKAENMIAHKEEIFARPKRTW-FVTEKEKKLAVKADKASIEK 451 (602)
Q Consensus 406 ~e~~~~~~e~~~~~~~~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~ 451 (602)
..+...+.+.++..++..|...++.| |+. ++..++.+.+|..
T Consensus 615 ~~~~~~e~~~~I~~Le~~M~~aA~~l~FE~----Aa~lRD~i~~L~~ 657 (663)
T COG0556 615 SKMSKKELEKLIKKLEKEMKEAAKNLEFEE----AARLRDEIKELKE 657 (663)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHHHH
Confidence 22455667788888888999998888 765 8888888887763
No 72
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=6.7e-37 Score=306.36 Aligned_cols=289 Identities=34% Similarity=0.487 Sum_probs=230.2
Q ss_pred CCcEEEEEcChHHHHHHHHHHHHHHhhcC---CceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCC
Q 007481 68 PAIRVLILTPTRELAVQVHSMIEKIAQFT---DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDD 144 (602)
Q Consensus 68 ~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~---~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 144 (602)
+.+..+|+-|+++|++|.++.+++|-.++ .++..++.||.....|-..+..+.+|+|+||+++.+.+... .+.+..
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g-~~~lt~ 363 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKG-LVTLTH 363 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhcc-ceeeee
Confidence 45789999999999999999777665543 56677899999999999999999999999999999988874 577888
Q ss_pred cceEEEeCccccccCCcHHHHHHHHHhCCC------CcceeeeeccCCh-hHHHHHHHhcCCCeEEecCCCCCCCCCcee
Q 007481 145 LAVLILDEADRLLELGFSAEIHELVRLCPK------RRQTMLFSATLTE-DVDELIKLSLTKPLRLSADPSAKRPSTLTE 217 (602)
Q Consensus 145 l~llVlDEah~l~~~gf~~~i~~i~~~~~~------~~q~il~SAT~~~-~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~ 217 (602)
..++|+||++.++..|+.+.+..+-..+|. ..|.++.|||+.. ++..+....++-|..+........|....+
T Consensus 364 crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHh 443 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHH 443 (725)
T ss_pred eEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcc
Confidence 999999999999999999998888766653 5799999999852 344455666777777766554444433322
Q ss_pred eeeeech-------------------------------hhhhhHHHHH-----HHHhhhcCCCeEEEEeCcHHHHHHHHH
Q 007481 218 EVVRIRR-------------------------------MREVNQEAVL-----LSLCSKTFTSKVIIFSGTKQAAHRLKI 261 (602)
Q Consensus 218 ~~~~~~~-------------------------------~~~~~k~~~l-----~~l~~~~~~~kvIIF~~s~~~a~~l~~ 261 (602)
...-+.+ ........+| .....+..-+++||||.|+..|+.|..
T Consensus 444 vv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 444 VVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred ceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHH
Confidence 2211111 1111111111 112234445799999999999999999
Q ss_pred HHhhcC---CceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCC
Q 007481 262 LFGLAA---LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 338 (602)
Q Consensus 262 ~L~~~g---~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g 338 (602)
+|.+.| ++|+.+||+..+.+|.+.++.|..+++.+|||||+++|||||.++-++||..+|.+...|+||+||.||+.
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhh
Confidence 998775 68999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEecCcHHHHHH
Q 007481 339 REGYAVTFVTDNDRSLLKA 357 (602)
Q Consensus 339 ~~g~~i~l~~~~d~~~l~~ 357 (602)
+-|.+|+|+...-.+....
T Consensus 604 rmglaislvat~~ekvwyh 622 (725)
T KOG0349|consen 604 RMGLAISLVATVPEKVWYH 622 (725)
T ss_pred hcceeEEEeeccchheeeh
Confidence 9999999987654444443
No 73
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=326.25 Aligned_cols=335 Identities=20% Similarity=0.255 Sum_probs=251.2
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhc-CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHH
Q 007481 4 NLSRPLLRACEALGYSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 82 (602)
Q Consensus 4 ~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~-g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La 82 (602)
.+++.+.+-+...|+..+.|.|+.++...+- ++|+|+++|||||||+++++.++..+... +.++|||||+++||
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-----~~k~vYivPlkALa 89 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-----GGKVVYIVPLKALA 89 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-----CCcEEEEeChHHHH
Confidence 3788889999999999999999998876654 69999999999999999999999998764 34699999999999
Q ss_pred HHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcH
Q 007481 83 VQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS 162 (602)
Q Consensus 83 ~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~ 162 (602)
.|.++.|+.| ...|++|...+|+......+ ...++|+|+||+.+...+++..+ .+..+++|||||+|.+.+..-.
T Consensus 90 ~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~~---l~~~~ViVtT~EK~Dsl~R~~~~-~~~~V~lvViDEiH~l~d~~RG 164 (766)
T COG1204 90 EEKYEEFSRL-EELGIRVGISTGDYDLDDER---LARYDVIVTTPEKLDSLTRKRPS-WIEEVDLVVIDEIHLLGDRTRG 164 (766)
T ss_pred HHHHHHhhhH-HhcCCEEEEecCCcccchhh---hccCCEEEEchHHhhHhhhcCcc-hhhcccEEEEeeeeecCCcccC
Confidence 9999999955 45699999999998755432 46789999999999999988755 5788999999999998876444
Q ss_pred HHHHHHHH---hCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCC-CCCCCCCceeeeeeechhhh---hhHHHHHH
Q 007481 163 AEIHELVR---LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADP-SAKRPSTLTEEVVRIRRMRE---VNQEAVLL 235 (602)
Q Consensus 163 ~~i~~i~~---~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~-~~~~~~~l~~~~~~~~~~~~---~~k~~~l~ 235 (602)
..++.|+. ......|++++|||+|+. .+++...-.+++.....+ +..++....+.+........ ........
T Consensus 165 ~~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~ 243 (766)
T COG1204 165 PVLESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLAL 243 (766)
T ss_pred ceehhHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHH
Confidence 44444433 333448999999999854 444444433333211111 22233334444444332111 11112222
Q ss_pred HHh-h-hcCCCeEEEEeCcHHHHHHHHHHHhh-------------------------------------cCCceeeccCC
Q 007481 236 SLC-S-KTFTSKVIIFSGTKQAAHRLKILFGL-------------------------------------AALKAAELHGN 276 (602)
Q Consensus 236 ~l~-~-~~~~~kvIIF~~s~~~a~~l~~~L~~-------------------------------------~g~~~~~lhg~ 276 (602)
.++ . -..++.+||||+|++.+...+..+.. ....++++|++
T Consensus 244 ~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAG 323 (766)
T COG1204 244 ELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAG 323 (766)
T ss_pred HHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccC
Confidence 222 2 33467999999999999888777762 01236789999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEE----EcC-----CCCChhhHHHHhhhcccCCC--cceEEE
Q 007481 277 LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI----NYA-----CPRDLTSYVHRVGRTARAGR--EGYAVT 345 (602)
Q Consensus 277 ~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI----~~d-----~p~s~~~yiQriGRa~R~g~--~g~~i~ 345 (602)
++..+|.-+.+.|+.|.++||+||+.++.|+|+|.-.+|| .|+ .+-+..+++|+.|||||.|- .|.+++
T Consensus 324 L~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i 403 (766)
T COG1204 324 LPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAII 403 (766)
T ss_pred CCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEE
Confidence 9999999999999999999999999999999999887777 466 45588999999999999874 477888
Q ss_pred EEec
Q 007481 346 FVTD 349 (602)
Q Consensus 346 l~~~ 349 (602)
+.+.
T Consensus 404 ~~~~ 407 (766)
T COG1204 404 LATS 407 (766)
T ss_pred EecC
Confidence 7743
No 74
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=8.1e-34 Score=298.49 Aligned_cols=290 Identities=19% Similarity=0.201 Sum_probs=201.0
Q ss_pred HHHHHHHHHhcCCC--EEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcC----C
Q 007481 24 IQAACIPLALTGRD--ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT----D 97 (602)
Q Consensus 24 ~Q~~~i~~~l~g~d--vii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~----~ 97 (602)
+|.++++.+.++.+ ++++||||||||.+|++|++.. ..+++|++|+++|+.|+++.+..+.... +
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~---------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~ 71 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG---------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERD 71 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc---------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCC
Confidence 59999999999874 7889999999999999998842 2258999999999999999998887432 5
Q ss_pred ceEEEEECCCCHHH--------------------HHHHHcCCCcEEEECcHHHHHHHHccCCC-------CCCCcceEEE
Q 007481 98 IRCCLVVGGLSTKM--------------------QETALRSMPDIVVATPGRMIDHLRNSMSV-------DLDDLAVLIL 150 (602)
Q Consensus 98 i~v~~~~g~~~~~~--------------------~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~-------~l~~l~llVl 150 (602)
+.+..+.|...... ........+.|++|||+.|...++..... .+..+++|||
T Consensus 72 ~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~ 151 (357)
T TIGR03158 72 VNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIF 151 (357)
T ss_pred ceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEE
Confidence 56666666522110 00111346889999999997766542111 2578999999
Q ss_pred eCccccccCCc-----HHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHh--cCCCeEEecCCCC----------CCC-
Q 007481 151 DEADRLLELGF-----SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLS--LTKPLRLSADPSA----------KRP- 212 (602)
Q Consensus 151 DEah~l~~~gf-----~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~--l~~p~~~~~~~~~----------~~~- 212 (602)
||+|.+..++. ......++.......+++++|||+++.+.+.+... +..|+........ ..+
T Consensus 152 DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~ 231 (357)
T TIGR03158 152 DEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKT 231 (357)
T ss_pred ecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccc
Confidence 99999775432 12233333433445799999999998877766543 3444432221100 000
Q ss_pred -------CCceeeeeeechhhhhhHHHHHH---H-H---hhhcCCCeEEEEeCcHHHHHHHHHHHhhcC--CceeeccCC
Q 007481 213 -------STLTEEVVRIRRMREVNQEAVLL---S-L---CSKTFTSKVIIFSGTKQAAHRLKILFGLAA--LKAAELHGN 276 (602)
Q Consensus 213 -------~~l~~~~~~~~~~~~~~k~~~l~---~-l---~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g--~~~~~lhg~ 276 (602)
+.+.+.+.. .. ..+...+. . + +....++++||||+|+..++.++..|...+ +.+..+||.
T Consensus 232 ~~~~~~~~~i~~~~~~-~~---~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~ 307 (357)
T TIGR03158 232 QSFRPVLPPVELELIP-AP---DFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGF 307 (357)
T ss_pred cccceeccceEEEEEe-CC---chhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecC
Confidence 123332222 11 11111121 1 1 112346799999999999999999999764 578899999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcc
Q 007481 277 LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTA 335 (602)
Q Consensus 277 ~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~ 335 (602)
+++.+|.++ ++.+|||||+++++|||++.+ +|| ++ |.+..+|+||+||+|
T Consensus 308 ~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 308 APKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 999998754 478999999999999999987 565 55 889999999999986
No 75
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=3.2e-34 Score=287.03 Aligned_cols=334 Identities=22% Similarity=0.321 Sum_probs=253.1
Q ss_pred HHHHHHH-HCCCCCC-cHHHHHHHHHHhcC-CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHH
Q 007481 8 PLLRACE-ALGYSKP-TPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 84 (602)
Q Consensus 8 ~ll~~l~-~~g~~~p-t~~Q~~~i~~~l~g-~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q 84 (602)
.+-.+|. -+|+..+ +|.|+.++..+..+ +||.+++|||+||+++|+||.|-. +.-+||+.|..+|...
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---------~gITIV~SPLiALIkD 76 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---------GGITIVISPLIALIKD 76 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---------CCeEEEehHHHHHHHH
Confidence 3445563 4577665 89999999999885 699999999999999999999743 2248999999999766
Q ss_pred HHHHHHHHhhcCCceEEEEECCCCHHHHHHHH------cCCCcEEEECcHHHH-----HHHHccCCCCCCCcceEEEeCc
Q 007481 85 VHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL------RSMPDIVVATPGRMI-----DHLRNSMSVDLDDLAVLILDEA 153 (602)
Q Consensus 85 ~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l------~~~~~IvI~Tp~~L~-----~~l~~~~~~~l~~l~llVlDEa 153 (602)
..+.+..+ .+.+..+.+..+..+....+ .....++..||+.-. +.|.. ..+-+.+.++|+|||
T Consensus 77 QiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~--L~~r~~L~Y~vVDEA 150 (641)
T KOG0352|consen 77 QIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG--LANRDVLRYIVVDEA 150 (641)
T ss_pred HHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH--HhhhceeeeEEechh
Confidence 65666554 56666666666665544433 344578999998642 22221 112344789999999
Q ss_pred cccccCC--cHHHHHHHHHh--CCCCcceeeeeccCChhHHHHH--HHhcCCCeEEecCCCCCCCCCceeeeeeechh-h
Q 007481 154 DRLLELG--FSAEIHELVRL--CPKRRQTMLFSATLTEDVDELI--KLSLTKPLRLSADPSAKRPSTLTEEVVRIRRM-R 226 (602)
Q Consensus 154 h~l~~~g--f~~~i~~i~~~--~~~~~q~il~SAT~~~~~~~l~--~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~-~ 226 (602)
|.+..|| |+..+..+-.. .-.....+.+|||.++.+.+-+ .+.+.+|+.++..+.. ....|+.+... .
T Consensus 151 HCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~F-----R~NLFYD~~~K~~ 225 (641)
T KOG0352|consen 151 HCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTF-----RDNLFYDNHMKSF 225 (641)
T ss_pred hhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcch-----hhhhhHHHHHHHH
Confidence 9999998 77766555332 2245668999999999988765 6778889876643221 11111111100 0
Q ss_pred hhhHHHHHHHHhhh-------------cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCC
Q 007481 227 EVNQEAVLLSLCSK-------------TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 293 (602)
Q Consensus 227 ~~~k~~~l~~l~~~-------------~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~ 293 (602)
-.+....|..++.. ...+-.||||.|++.+++++..|...|+++..+|.++...+|.++.+.|.+++
T Consensus 226 I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~ 305 (641)
T KOG0352|consen 226 ITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNE 305 (641)
T ss_pred hhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCC
Confidence 11222334433321 22367899999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHH
Q 007481 294 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361 (602)
Q Consensus 294 ~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~ 361 (602)
+.|++||..+++|+|-|+|.+|||+++|.|...|.|..||+||.|...+|-++++.+|+..+..+...
T Consensus 306 ~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~ 373 (641)
T KOG0352|consen 306 IPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSG 373 (641)
T ss_pred CCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999888877543
No 76
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=6.2e-33 Score=316.45 Aligned_cols=337 Identities=23% Similarity=0.300 Sum_probs=261.4
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHH
Q 007481 7 RPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH 86 (602)
Q Consensus 7 ~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~ 86 (602)
..+..+|...|+..|+++|.+|+..+.+|+|+||+.+||||||.+|++|++++++..+.. ++|+|.||++||..+.
T Consensus 57 ~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a----~AL~lYPtnALa~DQ~ 132 (851)
T COG1205 57 ESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA----RALLLYPTNALANDQA 132 (851)
T ss_pred hHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc----cEEEEechhhhHhhHH
Confidence 345778888999999999999999999999999999999999999999999999987553 7999999999999999
Q ss_pred HHHHHHhhcCC--ceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHc-cC--CCCCCCcceEEEeCccccccCCc
Q 007481 87 SMIEKIAQFTD--IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRN-SM--SVDLDDLAVLILDEADRLLELGF 161 (602)
Q Consensus 87 ~~~~~l~~~~~--i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~-~~--~~~l~~l~llVlDEah~l~~~gf 161 (602)
+.+..+....+ +.+....|+.........+.+.|+|++|||.+|..++.. .. .+.+.++++|||||+|..-.- |
T Consensus 133 ~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv-~ 211 (851)
T COG1205 133 ERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGV-Q 211 (851)
T ss_pred HHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecccc-c
Confidence 99999988776 888888898887777678899999999999999885443 22 234677999999999975532 2
Q ss_pred H-------HHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhh------
Q 007481 162 S-------AEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREV------ 228 (602)
Q Consensus 162 ~-------~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~------ 228 (602)
. ..+..++...+..+|+|+.|||+.+. .++...+...++...+.... .+......+...++....
T Consensus 212 GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g-~~~~~~~~~~~~p~~~~~~~~~r~ 289 (851)
T COG1205 212 GSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDG-SPRGLRYFVRREPPIRELAESIRR 289 (851)
T ss_pred hhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCC-CCCCceEEEEeCCcchhhhhhccc
Confidence 2 23334444556689999999999744 45556666666555433322 333333333332211100
Q ss_pred hHHHHHHHHhh--hcCCCeEEEEeCcHHHHHHHH----HHHhhcC----CceeeccCCCCHHHHHHHHHHHhcCCceEEE
Q 007481 229 NQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLK----ILFGLAA----LKAAELHGNLTQAQRLEALELFRKQHVDFLI 298 (602)
Q Consensus 229 ~k~~~l~~l~~--~~~~~kvIIF~~s~~~a~~l~----~~L~~~g----~~~~~lhg~~~~~eR~~il~~F~~g~~~iLV 298 (602)
.....+..+.. -..+-++|+|+.+...++.+. ..+...+ ..+..+++++...+|..++..|+.|++.+++
T Consensus 290 s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~ 369 (851)
T COG1205 290 SALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVI 369 (851)
T ss_pred chHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEe
Confidence 11111222221 224679999999999999995 3333344 5688899999999999999999999999999
Q ss_pred EcCccccccCcCCccEEEEcCCCC-ChhhHHHHhhhcccCCCcceEEEEEecC
Q 007481 299 ATDVAARGLDIIGVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVTDN 350 (602)
Q Consensus 299 aT~~~~~GlDip~v~~VI~~d~p~-s~~~yiQriGRa~R~g~~g~~i~l~~~~ 350 (602)
+|+++.-|+||..++.||++..|. +..++.|+.||+||.++.+.++++...+
T Consensus 370 st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 370 ATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred cchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 999999999999999999999999 8999999999999998777777776643
No 77
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=6.3e-32 Score=308.80 Aligned_cols=335 Identities=17% Similarity=0.171 Sum_probs=217.8
Q ss_pred CCcHHHHHHHHHHhc--CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCC
Q 007481 20 KPTPIQAACIPLALT--GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 97 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~--g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~ 97 (602)
.|.|||..++..++. ...+|+...+|.|||+.+++.+-+.+... ...++|||||. .|+.||..++... ++
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g----~~~rvLIVvP~-sL~~QW~~El~~k---F~ 223 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG----RAERVLILVPE-TLQHQWLVEMLRR---FN 223 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC----CCCcEEEEcCH-HHHHHHHHHHHHH---hC
Confidence 599999999887765 35799999999999988755554444332 22369999998 7899998888653 24
Q ss_pred ceEEEEECCCCHHHHH--HHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccC--CcHHHHHHHHHhCC
Q 007481 98 IRCCLVVGGLSTKMQE--TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL--GFSAEIHELVRLCP 173 (602)
Q Consensus 98 i~v~~~~g~~~~~~~~--~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~--gf~~~i~~i~~~~~ 173 (602)
+.+.++.++....... .......+++|+|++.+...-.....+.-..|++|||||||++... .-......+.....
T Consensus 224 l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~ 303 (956)
T PRK04914 224 LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAE 303 (956)
T ss_pred CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhh
Confidence 5555444432111000 0111246899999887764211000122236889999999998732 11222333333334
Q ss_pred CCcceeeeeccCCh-hHHHHH-HHhcCCCeE-------------------------------------------------
Q 007481 174 KRRQTMLFSATLTE-DVDELI-KLSLTKPLR------------------------------------------------- 202 (602)
Q Consensus 174 ~~~q~il~SAT~~~-~~~~l~-~~~l~~p~~------------------------------------------------- 202 (602)
....++++||||-. ...++. .+.+-+|..
T Consensus 304 ~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~ 383 (956)
T PRK04914 304 VIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEP 383 (956)
T ss_pred ccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhH
Confidence 45678999999952 111100 000000000
Q ss_pred -------------------------------EecCCCCCCCCCcee---eeeeech------------------------
Q 007481 203 -------------------------------LSADPSAKRPSTLTE---EVVRIRR------------------------ 224 (602)
Q Consensus 203 -------------------------------~~~~~~~~~~~~l~~---~~~~~~~------------------------ 224 (602)
+.+.........+.. ..+.+..
T Consensus 384 l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~ 463 (956)
T PRK04914 384 LLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQ 463 (956)
T ss_pred HHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHH
Confidence 000000000000000 0000000
Q ss_pred -----------hhhhhHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHH-hhcCCceeeccCCCCHHHHHHHHHHHhcC
Q 007481 225 -----------MREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILF-GLAALKAAELHGNLTQAQRLEALELFRKQ 292 (602)
Q Consensus 225 -----------~~~~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L-~~~g~~~~~lhg~~~~~eR~~il~~F~~g 292 (602)
.....+...|..++....+.++||||+++..+..+...| ...|+.+..+||+|++.+|..+++.|+++
T Consensus 464 ~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~ 543 (956)
T PRK04914 464 IYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADE 543 (956)
T ss_pred HHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcC
Confidence 001123445666666666789999999999999999999 46799999999999999999999999984
Q ss_pred --CceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHh
Q 007481 293 --HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362 (602)
Q Consensus 293 --~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~ 362 (602)
...|||||+++++|+|++.+++|||||+|||+..|+||+||++|.|+.+.+.+++...+......+.+.+
T Consensus 544 ~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~ 615 (956)
T PRK04914 544 EDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWY 615 (956)
T ss_pred CCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999998877776554443444444433
No 78
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=8.7e-33 Score=302.65 Aligned_cols=344 Identities=19% Similarity=0.220 Sum_probs=258.4
Q ss_pred HHCCCCCCcHHHHHHHHHHhc-CCCEEEEcCCCchHHHHHHHHHHHHHHcCCC----CCCCcEEEEEcChHHHHHHHHHH
Q 007481 14 EALGYSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPK----RIPAIRVLILTPTRELAVQVHSM 88 (602)
Q Consensus 14 ~~~g~~~pt~~Q~~~i~~~l~-g~dvii~a~TGSGKT~a~~l~il~~l~~~~~----~~~~~~vLiL~Ptr~La~Q~~~~ 88 (602)
.-++|.+++.+|..++|.+.. +.|.|||||||||||.+|+|.+|+.+..... ...+.+++||+|+++||.++++.
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 457899999999999999997 6899999999999999999999998875221 23567899999999999988877
Q ss_pred HHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccC--CCCCCCcceEEEeCccccccCCcHHHHH
Q 007481 89 IEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM--SVDLDDLAVLILDEADRLLELGFSAEIH 166 (602)
Q Consensus 89 ~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~--~~~l~~l~llVlDEah~l~~~gf~~~i~ 166 (602)
+.+=....++.|.-++|+......+ -..++|+|+||+.+--.-+.+. ...++.+.+|||||+|.+-+. ....++
T Consensus 184 ~~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlE 259 (1230)
T KOG0952|consen 184 FSKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLE 259 (1230)
T ss_pred HhhhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHH
Confidence 7664455699999999998765544 3457999999999754444322 223577899999999987765 455555
Q ss_pred HHHH-------hCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHH-----HH
Q 007481 167 ELVR-------LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA-----VL 234 (602)
Q Consensus 167 ~i~~-------~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~-----~l 234 (602)
.|+. ......+++++|||+|+..+-...+..+.+.-+.......+|..+.+.++-+.......... ..
T Consensus 260 tiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~ 339 (1230)
T KOG0952|consen 260 TIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCY 339 (1230)
T ss_pred HHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHH
Confidence 5543 33456789999999997655433444444555555566778889998888766541111111 11
Q ss_pred HHHhh-hcCCCeEEEEeCcHHHHHHHHHHHhhcC-----------------------CceeeccCCCCHHHHHHHHHHHh
Q 007481 235 LSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAA-----------------------LKAAELHGNLTQAQRLEALELFR 290 (602)
Q Consensus 235 ~~l~~-~~~~~kvIIF~~s~~~a~~l~~~L~~~g-----------------------~~~~~lhg~~~~~eR~~il~~F~ 290 (602)
....+ -..+.+++|||.++..+...+..|.... .....+|.+|...+|.-+...|.
T Consensus 340 ~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~ 419 (1230)
T KOG0952|consen 340 DKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFK 419 (1230)
T ss_pred HHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHh
Confidence 12222 2346799999999998888887775421 23567899999999999999999
Q ss_pred cCCceEEEEcCccccccCcCCccEEE----EcCCCC------ChhhHHHHhhhcccC--CCcceEEEEEecCcHHHHHHH
Q 007481 291 KQHVDFLIATDVAARGLDIIGVQTVI----NYACPR------DLTSYVHRVGRTARA--GREGYAVTFVTDNDRSLLKAI 358 (602)
Q Consensus 291 ~g~~~iLVaT~~~~~GlDip~v~~VI----~~d~p~------s~~~yiQriGRa~R~--g~~g~~i~l~~~~d~~~l~~i 358 (602)
.|.++||+||..+++|+|+|.-.++| .||.-. ..-.-+|..|||||. +..|.+|++.+.+....+..+
T Consensus 420 ~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sL 499 (1230)
T KOG0952|consen 420 EGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESL 499 (1230)
T ss_pred cCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHH
Confidence 99999999999999999999877776 344332 456779999999995 467999999888877777666
Q ss_pred HHH
Q 007481 359 AKR 361 (602)
Q Consensus 359 ~~~ 361 (602)
...
T Consensus 500 l~~ 502 (1230)
T KOG0952|consen 500 LTG 502 (1230)
T ss_pred HcC
Confidence 544
No 79
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.7e-32 Score=310.61 Aligned_cols=334 Identities=22% Similarity=0.275 Sum_probs=260.2
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHH
Q 007481 8 PLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHS 87 (602)
Q Consensus 8 ~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~ 87 (602)
...-....+|+..++|-|.++|..++.|+|+.+.+|||+||+++|+||++-. +.-+|||.|...|..-+
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~---------~gitvVISPL~SLm~DQ-- 320 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL---------GGVTVVISPLISLMQDQ-- 320 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc---------CCceEEeccHHHHHHHH--
Confidence 3344457889999999999999999999999999999999999999999721 22489999999996543
Q ss_pred HHHHHhhcCCceEEEEECCCCHHHH---HHHHcC---CCcEEEECcHHHHHHHHcc-CCCCCCC---cceEEEeCccccc
Q 007481 88 MIEKIAQFTDIRCCLVVGGLSTKMQ---ETALRS---MPDIVVATPGRMIDHLRNS-MSVDLDD---LAVLILDEADRLL 157 (602)
Q Consensus 88 ~~~~l~~~~~i~v~~~~g~~~~~~~---~~~l~~---~~~IvI~Tp~~L~~~l~~~-~~~~l~~---l~llVlDEah~l~ 157 (602)
+..+ ...++..+.+.++.....+ +..+.. ..+|+..||+.+...-.-. ....+.. +.++||||||.+.
T Consensus 321 -v~~L-~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVS 398 (941)
T KOG0351|consen 321 -VTHL-SKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVS 398 (941)
T ss_pred -HHhh-hhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhh
Confidence 4444 2348888999998887533 333333 3689999999985421100 1122333 8899999999999
Q ss_pred cCC--cHHHHHHHH---HhCCCCcceeeeeccCChhHHHHH--HHhcCCCeEEecCCCCCCCCCceeeeeeechhh-hhh
Q 007481 158 ELG--FSAEIHELV---RLCPKRRQTMLFSATLTEDVDELI--KLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR-EVN 229 (602)
Q Consensus 158 ~~g--f~~~i~~i~---~~~~~~~q~il~SAT~~~~~~~l~--~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~ 229 (602)
.|| |+.....+. ...+ ...+|.+|||.+..+..-+ .+.+.+|..+. .....+++...+.. .. ...
T Consensus 399 qWgHdFRp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~---~sfnR~NL~yeV~~---k~~~~~ 471 (941)
T KOG0351|consen 399 QWGHDFRPSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPELFK---SSFNRPNLKYEVSP---KTDKDA 471 (941)
T ss_pred hhcccccHHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcceec---ccCCCCCceEEEEe---ccCccc
Confidence 998 776665553 3333 3679999999998877655 44455555332 22344455444332 22 222
Q ss_pred HHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCc
Q 007481 230 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI 309 (602)
Q Consensus 230 k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDi 309 (602)
....+...-...+....||+|.++.+|+.++..|...|+++..||++|+..+|..+...|..++++|+|||=++++|||.
T Consensus 472 ~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK 551 (941)
T KOG0351|consen 472 LLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDK 551 (941)
T ss_pred hHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCC
Confidence 23334444456677899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHH
Q 007481 310 IGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361 (602)
Q Consensus 310 p~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~ 361 (602)
|+|..||||.+|.|.+.|.|-+|||||.|....|++|++..|...++.+...
T Consensus 552 ~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s 603 (941)
T KOG0351|consen 552 PDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTS 603 (941)
T ss_pred CceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999998888777654
No 80
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=9.7e-32 Score=311.04 Aligned_cols=300 Identities=18% Similarity=0.236 Sum_probs=205.9
Q ss_pred HHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcCh----HHHHHHHHHHHHH-HhhcCCceEE
Q 007481 27 ACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT----RELAVQVHSMIEK-IAQFTDIRCC 101 (602)
Q Consensus 27 ~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Pt----r~La~Q~~~~~~~-l~~~~~i~v~ 101 (602)
+.+..+..+..+||+|+||||||+ ++|.+....... ....+++.-|. ++||.|+++++.. +....|+
T Consensus 81 ~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~g---~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY--- 152 (1294)
T PRK11131 81 DILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRG---VKGLIGHTQPRRLAARTVANRIAEELETELGGCVGY--- 152 (1294)
T ss_pred HHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCCC---CCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceece---
Confidence 445555556677789999999998 588543322111 12235555674 5777777777664 2222222
Q ss_pred EEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcc-ccccCCcHHH-HHHHHHhCCCCccee
Q 007481 102 LVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD-RLLELGFSAE-IHELVRLCPKRRQTM 179 (602)
Q Consensus 102 ~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah-~l~~~gf~~~-i~~i~~~~~~~~q~i 179 (602)
-+.. .......+.|+|+|||+|++++... ..++.+++||||||| ++++.+|... +..++.. .+..|+|
T Consensus 153 -~vrf------~~~~s~~t~I~v~TpG~LL~~l~~d--~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpdlKvI 222 (1294)
T PRK11131 153 -KVRF------NDQVSDNTMVKLMTDGILLAEIQQD--RLLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPDLKVI 222 (1294)
T ss_pred -eecC------ccccCCCCCEEEEChHHHHHHHhcC--CccccCcEEEecCccccccccchHHHHHHHhhhc-CCCceEE
Confidence 1111 1112456899999999999999864 458999999999999 6888888753 3333322 2467999
Q ss_pred eeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhh---hhHHHHHHHHh---hhcCCCeEEEEeCcH
Q 007481 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMRE---VNQEAVLLSLC---SKTFTSKVIIFSGTK 253 (602)
Q Consensus 180 l~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~k~~~l~~l~---~~~~~~kvIIF~~s~ 253 (602)
+||||++. ..+...+.+.|+ +.+.... ..+...+........ ......+...+ .....+.+|||+++.
T Consensus 223 LmSATid~--e~fs~~F~~apv-I~V~Gr~---~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~ 296 (1294)
T PRK11131 223 ITSATIDP--ERFSRHFNNAPI-IEVSGRT---YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGE 296 (1294)
T ss_pred EeeCCCCH--HHHHHHcCCCCE-EEEcCcc---ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCH
Confidence 99999974 356666666664 4443222 122233332211111 11111111111 123467899999999
Q ss_pred HHHHHHHHHHhhcCCc---eeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcC-----------
Q 007481 254 QAAHRLKILFGLAALK---AAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA----------- 319 (602)
Q Consensus 254 ~~a~~l~~~L~~~g~~---~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d----------- 319 (602)
..++.++..|...++. +..|||++++.+|..+++. .|..+||||||++++|||||+|++||+++
T Consensus 297 ~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~ 374 (1294)
T PRK11131 297 REIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRT 374 (1294)
T ss_pred HHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccccccccc
Confidence 9999999999987764 6789999999999999886 47889999999999999999999999986
Q ss_pred ----CC---CChhhHHHHhhhcccCCCcceEEEEEecCcHH
Q 007481 320 ----CP---RDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 353 (602)
Q Consensus 320 ----~p---~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~ 353 (602)
+| .|..+|.||.|||||. .+|.||.|+++.+..
T Consensus 375 ~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 375 KVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred CcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 34 3557999999999997 799999999976543
No 81
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=1.6e-30 Score=293.38 Aligned_cols=320 Identities=18% Similarity=0.222 Sum_probs=219.7
Q ss_pred CCcHHHHHHHHHHhcC---CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcC
Q 007481 20 KPTPIQAACIPLALTG---RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 96 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~g---~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~ 96 (602)
.||++|+++++.++.+ +++++.|+||||||.+|+.++.+.+.. +.++|||+|+++|+.|+++.++.. .
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~------g~~vLvLvPt~~L~~Q~~~~l~~~---f 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ------GKQALVLVPEIALTPQMLARFRAR---F 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc------CCeEEEEeCcHHHHHHHHHHHHHH---h
Confidence 5899999999999984 789999999999999998777666532 347999999999999999998864 3
Q ss_pred CceEEEEECCCCHHHHH---HH-HcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC-----c-HHHHH
Q 007481 97 DIRCCLVVGGLSTKMQE---TA-LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-----F-SAEIH 166 (602)
Q Consensus 97 ~i~v~~~~g~~~~~~~~---~~-l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g-----f-~~~i~ 166 (602)
+..+..++|+.+..... .. ..+.++|+|+|++.+. ..+.++++|||||+|...-.. | ...+
T Consensus 215 g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v- 285 (679)
T PRK05580 215 GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL- 285 (679)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCccccccCcCCCCcHHHH-
Confidence 67889999998765443 22 3456899999998763 457789999999999765322 1 1222
Q ss_pred HHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhh-h----hhHHHHHHHHhhh-
Q 007481 167 ELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR-E----VNQEAVLLSLCSK- 240 (602)
Q Consensus 167 ~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~-~----~~k~~~l~~l~~~- 240 (602)
.+........+++++|||++.+....+.......+ .............-.++...... . ......+..+.+.
T Consensus 286 a~~ra~~~~~~~il~SATps~~s~~~~~~g~~~~~--~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l 363 (679)
T PRK05580 286 AVVRAKLENIPVVLGSATPSLESLANAQQGRYRLL--RLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRL 363 (679)
T ss_pred HHHHhhccCCCEEEEcCCCCHHHHHHHhccceeEE--EeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHH
Confidence 23334456789999999998665544432211111 11111000000011112211100 0 0001112222222
Q ss_pred cCCCeEEEEeCcH------------------------------------------------------------HHHHHHH
Q 007481 241 TFTSKVIIFSGTK------------------------------------------------------------QAAHRLK 260 (602)
Q Consensus 241 ~~~~kvIIF~~s~------------------------------------------------------------~~a~~l~ 260 (602)
..+.++|||++.+ .-++.+.
T Consensus 364 ~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~ 443 (679)
T PRK05580 364 ERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLE 443 (679)
T ss_pred HcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHH
Confidence 2244777876642 2445667
Q ss_pred HHHhhc--CCceeeccCCCCH--HHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCCC--C----------h
Q 007481 261 ILFGLA--ALKAAELHGNLTQ--AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR--D----------L 324 (602)
Q Consensus 261 ~~L~~~--g~~~~~lhg~~~~--~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~--s----------~ 324 (602)
+.|... +.++..+|+++.+ .++..+++.|++|+.+|||+|+++++|+|+|++++|+.+|.+. + .
T Consensus 444 e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~ 523 (679)
T PRK05580 444 EELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTF 523 (679)
T ss_pred HHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHH
Confidence 777665 7889999999874 6789999999999999999999999999999999997665542 2 2
Q ss_pred hhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHH
Q 007481 325 TSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359 (602)
Q Consensus 325 ~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~ 359 (602)
..|+|++||+||.+..|.+++.....+...+..+.
T Consensus 524 ~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~~ 558 (679)
T PRK05580 524 QLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQALL 558 (679)
T ss_pred HHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHHH
Confidence 67999999999999999999987776666555553
No 82
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.98 E-value=5.3e-31 Score=283.98 Aligned_cols=293 Identities=22% Similarity=0.276 Sum_probs=204.0
Q ss_pred CCCcHHHHHHHHHHhc----CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 19 SKPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 19 ~~pt~~Q~~~i~~~l~----g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
..|+|||++++..+.. ++.+++++|||+|||.+++ -++..+.. .+|||||+.+|+.||++.+..+..
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~-~~~~~~~~--------~~Lvlv~~~~L~~Qw~~~~~~~~~ 105 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAA-EAIAELKR--------STLVLVPTKELLDQWAEALKKFLL 105 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHH-HHHHHhcC--------CEEEEECcHHHHHHHHHHHHHhcC
Confidence 4599999999999998 8999999999999998764 44444321 399999999999999877766533
Q ss_pred cCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHH--HHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhC
Q 007481 95 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDH--LRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172 (602)
Q Consensus 95 ~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~--l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~ 172 (602)
.. ..++.+.|+.... .. ..|+|+|.+.+... +. .+..+.+.+||+||||++.+..|......+....
T Consensus 106 ~~-~~~g~~~~~~~~~------~~-~~i~vat~qtl~~~~~l~---~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~ 174 (442)
T COG1061 106 LN-DEIGIYGGGEKEL------EP-AKVTVATVQTLARRQLLD---EFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAY 174 (442)
T ss_pred Cc-cccceecCceecc------CC-CcEEEEEhHHHhhhhhhh---hhcccccCEEEEEccccCCcHHHHHHHHhhhccc
Confidence 21 1234444432211 11 46999999998774 22 2334468999999999998876665555444333
Q ss_pred CCCcceeeeeccCChhHH-HHHHHh-cCCCeEEecCCCC------CCCCCceeeeeeec------------h--------
Q 007481 173 PKRRQTMLFSATLTEDVD-ELIKLS-LTKPLRLSADPSA------KRPSTLTEEVVRIR------------R-------- 224 (602)
Q Consensus 173 ~~~~q~il~SAT~~~~~~-~l~~~~-l~~p~~~~~~~~~------~~~~~l~~~~~~~~------------~-------- 224 (602)
+ ++++||||+.... .+...+ +..|+.+...... ..+..+....+... .
T Consensus 175 ~----~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~ 250 (442)
T COG1061 175 P----RLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRAR 250 (442)
T ss_pred c----eeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhh
Confidence 3 8999999873321 111111 1113333222110 00000000000000 0
Q ss_pred -------------hhhhhHHHHHHHHhhhc-CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHh
Q 007481 225 -------------MREVNQEAVLLSLCSKT-FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 290 (602)
Q Consensus 225 -------------~~~~~k~~~l~~l~~~~-~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~ 290 (602)
.....+...+..++... .+.+++|||.+..++..++..|...++ +..++|..+..+|..+++.|+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr 329 (442)
T COG1061 251 GTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFR 329 (442)
T ss_pred hhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHH
Confidence 00011111222222323 467999999999999999999998888 889999999999999999999
Q ss_pred cCCceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhccc
Q 007481 291 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTAR 336 (602)
Q Consensus 291 ~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R 336 (602)
.|.+++||++.++.+|+|+|+++++|...++.|...|+||+||.-|
T Consensus 330 ~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 330 TGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred cCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 9999999999999999999999999999999999999999999999
No 83
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.98 E-value=4.1e-33 Score=283.82 Aligned_cols=402 Identities=17% Similarity=0.217 Sum_probs=285.6
Q ss_pred CCCCcHHHHHHHHHHhcC---CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 18 YSKPTPIQAACIPLALTG---RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 18 ~~~pt~~Q~~~i~~~l~g---~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
-+.++|||..++..++.+ ++.||..|||+|||++- +.+...+.. ++||||.+...++||..+|..|+.
T Consensus 300 st~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVG-vTAa~tikK--------~clvLcts~VSVeQWkqQfk~wst 370 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG-VTAACTIKK--------SCLVLCTSAVSVEQWKQQFKQWST 370 (776)
T ss_pred ccccCchHHHHHHHHhCCCcccCceEEEecCCCCceee-eeeeeeecc--------cEEEEecCccCHHHHHHHHHhhcc
Confidence 357899999999999974 79999999999999873 455444422 499999999999999999999998
Q ss_pred cCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHH-------------HHHHHccCCCCCCCcceEEEeCccccccCCc
Q 007481 95 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-------------IDHLRNSMSVDLDDLAVLILDEADRLLELGF 161 (602)
Q Consensus 95 ~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L-------------~~~l~~~~~~~l~~l~llVlDEah~l~~~gf 161 (602)
.-+-.++.++.+.. .....++.|+|+|+.++ +++++. ..|.++|+||+|.++...|
T Consensus 371 i~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~------~EWGllllDEVHvvPA~MF 439 (776)
T KOG1123|consen 371 IQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRG------REWGLLLLDEVHVVPAKMF 439 (776)
T ss_pred cCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhc------CeeeeEEeehhccchHHHH
Confidence 88888898888643 22467789999997554 444544 3489999999999999999
Q ss_pred HHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcC-CCeEEec---------------------------CCCCCCCC
Q 007481 162 SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLT-KPLRLSA---------------------------DPSAKRPS 213 (602)
Q Consensus 162 ~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~-~p~~~~~---------------------------~~~~~~~~ 213 (602)
+..+..+..||. +++|||+-.+-+.+..+.+. .|-.+.. ...+.+..
T Consensus 440 RRVlsiv~aHcK-----LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~ 514 (776)
T KOG1123|consen 440 RRVLSIVQAHCK-----LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLREN 514 (776)
T ss_pred HHHHHHHHHHhh-----ccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhh
Confidence 999999989987 89999996554333222111 1111100 00111111
Q ss_pred CceeeeeeechhhhhhHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC-
Q 007481 214 TLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ- 292 (602)
Q Consensus 214 ~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g- 292 (602)
.-....+.+.+......+.+|+...+. .++++|||..+......++..|+.. +++|.++|.+|+.|++.|+-+
T Consensus 515 t~kr~lLyvMNP~KFraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~Kp-----fIYG~Tsq~ERm~ILqnFq~n~ 588 (776)
T KOG1123|consen 515 TRKRMLLYVMNPNKFRACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLGKP-----FIYGPTSQNERMKILQNFQTNP 588 (776)
T ss_pred hhhhheeeecCcchhHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCCc-----eEECCCchhHHHHHHHhcccCC
Confidence 112223344444445556666655444 7899999999999998888888755 889999999999999999965
Q ss_pred CceEEEEcCccccccCcCCccEEEEcCCCC-ChhhHHHHhhhcccCC------CcceEEEEEecCcHHHHHHHHHHhcCc
Q 007481 293 HVDFLIATDVAARGLDIIGVQTVINYACPR-DLTSYVHRVGRTARAG------REGYAVTFVTDNDRSLLKAIAKRAGSK 365 (602)
Q Consensus 293 ~~~iLVaT~~~~~GlDip~v~~VI~~d~p~-s~~~yiQriGRa~R~g------~~g~~i~l~~~~d~~~l~~i~~~~~~~ 365 (602)
.++.++.+.++...||+|+++++|+..... |..+-.||.||+-|+. .+...|+|++.++.+|...-.++.
T Consensus 589 ~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YStKRQ~--- 665 (776)
T KOG1123|consen 589 KVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYSTKRQQ--- 665 (776)
T ss_pred ccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhhhhhhh---
Confidence 889999999999999999999999654432 8899999999999963 357889999999999988776653
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccccccHHHHHHHHHHh
Q 007481 366 LKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKAD 445 (602)
Q Consensus 366 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 445 (602)
..++++...++.+.+..|+..-...+....++..+.+..+.......-.+..++. + +...++.+...+
T Consensus 666 ---FLidQGYsfkVit~L~gme~~~~l~y~skeeq~~LLq~Vl~a~d~~~e~E~~~~~-~--------~~~~~a~r~~gs 733 (776)
T KOG1123|consen 666 ---FLIDQGYSFKVITNLPGMENLEDLAYASKEEQLELLQKVLLASDLDAELEDLEDE-S--------RASSKAVRSEGS 733 (776)
T ss_pred ---hhhhcCceEEEeecCCCcCcCcccccCCHHHHHHHHHHHHhcchhhhcccccccc-c--------cccccceecccc
Confidence 6777777777677776666433333433334444444333333221111111111 1 122445667888
Q ss_pred HHHHHcCCCCCCcccchHhHHH
Q 007481 446 KASIEKGKGSGNEVTSAQQAED 467 (602)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~ 467 (602)
+..+++|+.+ +|+++.....
T Consensus 734 lssmsGgd~m--~Y~ey~~~~~ 753 (776)
T KOG1123|consen 734 LSSMSGGDDM--AYMEYNSSRN 753 (776)
T ss_pred cccccCCCcc--eeeeeccccc
Confidence 9999999888 7888774433
No 84
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.97 E-value=7.2e-30 Score=252.26 Aligned_cols=339 Identities=18% Similarity=0.215 Sum_probs=256.3
Q ss_pred CCCCCHHHHHHH-HHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHH
Q 007481 2 ELNLSRPLLRAC-EALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 80 (602)
Q Consensus 2 ~l~L~~~ll~~l-~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~ 80 (602)
+++-|...-+.| +.+....++|.|..+|+....|.++++..|||.||+++|.+|++.. ...+||+||...
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a---------dg~alvi~plis 145 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA---------DGFALVICPLIS 145 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc---------CCceEeechhHH
Confidence 456666666666 4678889999999999999999999999999999999999999853 335899999999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEECCCCHHHHH----HHHc--CCCcEEEECcHHHHH------HHHccCCCCCCCcceE
Q 007481 81 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE----TALR--SMPDIVVATPGRMID------HLRNSMSVDLDDLAVL 148 (602)
Q Consensus 81 La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~----~~l~--~~~~IvI~Tp~~L~~------~l~~~~~~~l~~l~ll 148 (602)
|.+...-+++.+ ++....+....+...-. .... ....++..||+.+.. -|.. .+....+.+|
T Consensus 146 lmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnklek--a~~~~~~~~i 219 (695)
T KOG0353|consen 146 LMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEK--ALEAGFFKLI 219 (695)
T ss_pred HHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHH--HhhcceeEEE
Confidence 987666666665 66666666555433211 1112 335789999998743 3333 3456678899
Q ss_pred EEeCccccccCC--cHHHHH--HHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeech
Q 007481 149 ILDEADRLLELG--FSAEIH--ELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR 224 (602)
Q Consensus 149 VlDEah~l~~~g--f~~~i~--~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~ 224 (602)
.+||+|....|| |+.... .|+...-+...++++|||.++.+.+-++..+.....+.+.... +.+++...+..-+.
T Consensus 220 aidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~f-nr~nl~yev~qkp~ 298 (695)
T KOG0353|consen 220 AIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGF-NRPNLKYEVRQKPG 298 (695)
T ss_pred eecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeeccc-CCCCceeEeeeCCC
Confidence 999999999988 555443 3444444567799999999988777665554433333332222 33455555444333
Q ss_pred hhhhhHHHHHHHHhh-hcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc
Q 007481 225 MREVNQEAVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA 303 (602)
Q Consensus 225 ~~~~~k~~~l~~l~~-~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~ 303 (602)
. +.+-.+-+..++. ...+...||||-+.+.++.++..|+..|+.+..+|..|.+.++.-+-+.|-.|++.|+|+|-++
T Consensus 299 n-~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvaf 377 (695)
T KOG0353|consen 299 N-EDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAF 377 (695)
T ss_pred C-hHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeee
Confidence 2 2222222333333 3445678999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcCCccEEEEcCCCCChhhHHH-------------------------------------------HhhhcccCCCc
Q 007481 304 ARGLDIIGVQTVINYACPRDLTSYVH-------------------------------------------RVGRTARAGRE 340 (602)
Q Consensus 304 ~~GlDip~v~~VI~~d~p~s~~~yiQ-------------------------------------------riGRa~R~g~~ 340 (602)
++|||-|+|++|||..+|.|.+.|.| ..||+||.+..
T Consensus 378 gmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~ 457 (695)
T KOG0353|consen 378 GMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMK 457 (695)
T ss_pred cccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCc
Confidence 99999999999999999999999999 67999999999
Q ss_pred ceEEEEEecCcHHHHHH
Q 007481 341 GYAVTFVTDNDRSLLKA 357 (602)
Q Consensus 341 g~~i~l~~~~d~~~l~~ 357 (602)
..||+++.-.|.-....
T Consensus 458 a~cilyy~~~difk~ss 474 (695)
T KOG0353|consen 458 ADCILYYGFADIFKISS 474 (695)
T ss_pred ccEEEEechHHHHhHHH
Confidence 99999998777544433
No 85
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=1.2e-29 Score=246.67 Aligned_cols=200 Identities=49% Similarity=0.783 Sum_probs=181.9
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+++|++.+++.|..+||+.|+++|.++++.++.|+|+++++|||+|||++|++|++..+..... ..++++||++|+++|
T Consensus 3 ~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~-~~~~~viii~p~~~L 81 (203)
T cd00268 3 ELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK-KDGPQALILAPTREL 81 (203)
T ss_pred cCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcc-cCCceEEEEcCCHHH
Confidence 6899999999999999999999999999999999999999999999999999999998877531 245689999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCc
Q 007481 82 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF 161 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf 161 (602)
+.|+...+..+....++.+..++|+.........+...++|+|+||+.|.+++.+.. ..+.+++++|+||||.+.+.+|
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~-~~~~~l~~lIvDE~h~~~~~~~ 160 (203)
T cd00268 82 ALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK-LDLSKVKYLVLDEADRMLDMGF 160 (203)
T ss_pred HHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC-CChhhCCEEEEeChHHhhccCh
Confidence 999999999998888899999999988776666666788999999999999998753 7788999999999999999999
Q ss_pred HHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEE
Q 007481 162 SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRL 203 (602)
Q Consensus 162 ~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~ 203 (602)
...+..+...++..+|++++|||+++.+..+...++.+|+.+
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 161 EDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred HHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 999999999999999999999999999999999999988765
No 86
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=3.7e-28 Score=270.28 Aligned_cols=147 Identities=20% Similarity=0.290 Sum_probs=130.4
Q ss_pred CCCCCHHHHHHHH-----HCCCCCC---cHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEE
Q 007481 2 ELNLSRPLLRACE-----ALGYSKP---TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVL 73 (602)
Q Consensus 2 ~l~L~~~ll~~l~-----~~g~~~p---t~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vL 73 (602)
.|+|.+.+.+.+. .+||..| ||+|.++||.++.++++|+.++||+|||++|++|++..++... .++
T Consensus 66 afal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~------~v~ 139 (970)
T PRK12899 66 AYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK------PVH 139 (970)
T ss_pred HhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC------CeE
Confidence 4788899988887 7899999 9999999999999999999999999999999999998886431 389
Q ss_pred EEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHH-HHHHHccCCCCCC-------Cc
Q 007481 74 ILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSVDLD-------DL 145 (602)
Q Consensus 74 iL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L-~~~l~~~~~~~l~-------~l 145 (602)
||+||++||.|.++++..+..+.++++++++||.+...+...+ .++|+|+||++| +|+++.. .+.++ .+
T Consensus 140 IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~-~~~~~~~~~vqr~~ 216 (970)
T PRK12899 140 LVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDN-SIATRKEEQVGRGF 216 (970)
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCC-CCCcCHHHhhcccc
Confidence 9999999999999999999999999999999999988776555 589999999999 9999875 24443 45
Q ss_pred ceEEEeCccccc
Q 007481 146 AVLILDEADRLL 157 (602)
Q Consensus 146 ~llVlDEah~l~ 157 (602)
.++||||||.|+
T Consensus 217 ~~~IIDEADsmL 228 (970)
T PRK12899 217 YFAIIDEVDSIL 228 (970)
T ss_pred cEEEEechhhhh
Confidence 899999999865
No 87
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2.5e-28 Score=272.34 Aligned_cols=318 Identities=20% Similarity=0.213 Sum_probs=227.9
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCce
Q 007481 20 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 99 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~ 99 (602)
.|++.|--.--.+.. .-|+.++||+|||++|.+|++..++.. ..|+||+||++||.|.++++..+..+++++
T Consensus 82 ~~ydvQliGg~~Lh~--G~Iaem~TGeGKTL~a~Lpa~~~al~G------~~V~VvTpn~yLA~qd~e~m~~l~~~lGLt 153 (896)
T PRK13104 82 RHFDVQLIGGMVLHE--GNIAEMRTGEGKTLVATLPAYLNAISG------RGVHIVTVNDYLAKRDSQWMKPIYEFLGLT 153 (896)
T ss_pred CcchHHHhhhhhhcc--CccccccCCCCchHHHHHHHHHHHhcC------CCEEEEcCCHHHHHHHHHHHHHHhcccCce
Confidence 466666555444444 458999999999999999999877643 248999999999999999999999999999
Q ss_pred EEEEECCCCHHHHHHHHcCCCcEEEECcHHH-HHHHHccCCCCC-----CCcceEEEeCccccccCC-------------
Q 007481 100 CCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSVDL-----DDLAVLILDEADRLLELG------------- 160 (602)
Q Consensus 100 v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L-~~~l~~~~~~~l-----~~l~llVlDEah~l~~~g------------- 160 (602)
+++++|+.+.......+ .++|+++||++| +|+|+....+++ ..+.++||||||.|+=..
T Consensus 154 v~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~~ 231 (896)
T PRK13104 154 VGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAED 231 (896)
T ss_pred EEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCcc
Confidence 99999998876655444 589999999999 999998654555 578999999999843100
Q ss_pred ---cHHHHHHHHHhCCC---------------------------------------------------------------
Q 007481 161 ---FSAEIHELVRLCPK--------------------------------------------------------------- 174 (602)
Q Consensus 161 ---f~~~i~~i~~~~~~--------------------------------------------------------------- 174 (602)
+...+..+...+..
T Consensus 232 ~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A 311 (896)
T PRK13104 232 SSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKA 311 (896)
T ss_pred chHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHH
Confidence 00000111110000
Q ss_pred -------------------------------------------------------------------CcceeeeeccCCh
Q 007481 175 -------------------------------------------------------------------RRQTMLFSATLTE 187 (602)
Q Consensus 175 -------------------------------------------------------------------~~q~il~SAT~~~ 187 (602)
-..+.+||+|...
T Consensus 312 ~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~t 391 (896)
T PRK13104 312 HAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADT 391 (896)
T ss_pred HHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChh
Confidence 0123455555544
Q ss_pred hHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHh-h-hcCCCeEEEEeCcHHHHHHHHHHHhh
Q 007481 188 DVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC-S-KTFTSKVIIFSGTKQAAHRLKILFGL 265 (602)
Q Consensus 188 ~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~-~-~~~~~kvIIF~~s~~~a~~l~~~L~~ 265 (602)
...++...+-...+.+... +|......-..+.. ....+...+...+ . ...+.++||||+|+..++.++..|..
T Consensus 392 e~~Ef~~iY~l~Vv~IPtn----kp~~R~d~~d~v~~-t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~ 466 (896)
T PRK13104 392 EAYEFQQIYNLEVVVIPTN----RSMIRKDEADLVYL-TQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKK 466 (896)
T ss_pred HHHHHHHHhCCCEEECCCC----CCcceecCCCeEEc-CHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 4444444332222222111 11111111111111 1222333333322 2 24578999999999999999999999
Q ss_pred cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcC-----------------------------------
Q 007481 266 AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII----------------------------------- 310 (602)
Q Consensus 266 ~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip----------------------------------- 310 (602)
.|+++..||+.+.+.++..+.+.|+.|. |+|||++++||+||.
T Consensus 467 ~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 544 (896)
T PRK13104 467 ENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEV 544 (896)
T ss_pred cCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHH
Confidence 9999999999999999999999999995 999999999999995
Q ss_pred ---CccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHH
Q 007481 311 ---GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 354 (602)
Q Consensus 311 ---~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~ 354 (602)
+=-+||-...+.|...--|-.||+||.|.+|.+.+|++-.|.-+
T Consensus 545 ~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~ 591 (896)
T PRK13104 545 IAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLM 591 (896)
T ss_pred HHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 12478888899999999999999999999999999999877544
No 88
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=1.3e-29 Score=294.54 Aligned_cols=315 Identities=18% Similarity=0.215 Sum_probs=218.0
Q ss_pred HCCCCCCcHHHH---HHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHH
Q 007481 15 ALGYSKPTPIQA---ACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 91 (602)
Q Consensus 15 ~~g~~~pt~~Q~---~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~ 91 (602)
...|...-|+.. +.+..+..+..+||+|+||||||+ ++|.+..-... ....++++.-|.|..|..++..+..
T Consensus 59 ~~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~---~~~~~I~~tQPRRlAA~svA~RvA~ 133 (1283)
T TIGR01967 59 EIRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGR---GSHGLIGHTQPRRLAARTVAQRIAE 133 (1283)
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCC---CCCceEecCCccHHHHHHHHHHHHH
Confidence 456776666665 344445456677899999999998 46765432211 1233677788999888877766654
Q ss_pred HhhcCCceEEEEECCC-CHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcc-ccccCCcHHH-HHHH
Q 007481 92 IAQFTDIRCCLVVGGL-STKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD-RLLELGFSAE-IHEL 168 (602)
Q Consensus 92 l~~~~~i~v~~~~g~~-~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah-~l~~~gf~~~-i~~i 168 (602)
. .+..++..+|.. ... ......+.|.|+|+|+|++.+... ..++.+++||||||| ++++.+|... +..+
T Consensus 134 e---lg~~lG~~VGY~vR~~---~~~s~~T~I~~~TdGiLLr~l~~d--~~L~~~~~IIIDEaHERsL~~D~LL~lLk~i 205 (1283)
T TIGR01967 134 E---LGTPLGEKVGYKVRFH---DQVSSNTLVKLMTDGILLAETQQD--RFLSRYDTIIIDEAHERSLNIDFLLGYLKQL 205 (1283)
T ss_pred H---hCCCcceEEeeEEcCC---cccCCCceeeeccccHHHHHhhhC--cccccCcEEEEcCcchhhccchhHHHHHHHH
Confidence 3 244444444421 111 112456789999999999998763 458999999999999 6888887764 5555
Q ss_pred HHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhh---hhhHHH----HHHHHhhhc
Q 007481 169 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR---EVNQEA----VLLSLCSKT 241 (602)
Q Consensus 169 ~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~k~~----~l~~l~~~~ 241 (602)
+... +..|+|+||||++. ..+...+...|+ +.+..... .+...+....... ...... .+..++. .
T Consensus 206 l~~r-pdLKlIlmSATld~--~~fa~~F~~apv-I~V~Gr~~---PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~-~ 277 (1283)
T TIGR01967 206 LPRR-PDLKIIITSATIDP--ERFSRHFNNAPI-IEVSGRTY---PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA-E 277 (1283)
T ss_pred HhhC-CCCeEEEEeCCcCH--HHHHHHhcCCCE-EEECCCcc---cceeEEecccccccchhhhHHHHHHHHHHHHHh-h
Confidence 5444 47899999999974 456666655665 33322211 1222222111100 011111 1222222 2
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcC---CceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEc
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGLAA---LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINY 318 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~~g---~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~ 318 (602)
..+.+|||+++..+++.+...|...+ +.+..|||++++.+|..++..+ +..+||||||++++|||||+|++||++
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDs 355 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDT 355 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeC
Confidence 45799999999999999999998764 4578899999999999986654 346899999999999999999999998
Q ss_pred CCCC------------------ChhhHHHHhhhcccCCCcceEEEEEecCcHH
Q 007481 319 ACPR------------------DLTSYVHRVGRTARAGREGYAVTFVTDNDRS 353 (602)
Q Consensus 319 d~p~------------------s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~ 353 (602)
+++. |..+|.||.||+||.| +|.||.|+++.+..
T Consensus 356 Gl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 356 GTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFN 407 (1283)
T ss_pred CCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHH
Confidence 8542 5679999999999987 99999999876543
No 89
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=1.3e-28 Score=280.03 Aligned_cols=314 Identities=20% Similarity=0.217 Sum_probs=205.3
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhc--
Q 007481 18 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-- 95 (602)
Q Consensus 18 ~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~-- 95 (602)
...|+|+|+.+......+..+|+.||||+|||.++++.+. .+.... ...+++|..||++++.|+++.+..+...
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~-~l~~~~---~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAW-RLIDQG---LADSIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHH-HHHHhC---CCCeEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 4479999998865544567789999999999999755544 444322 2347999999999999999999876542
Q ss_pred CCceEEEEECCCCHHHHH---------------------HHHc---C---CCcEEEECcHHHHHHHHccCCCCCCCc---
Q 007481 96 TDIRCCLVVGGLSTKMQE---------------------TALR---S---MPDIVVATPGRMIDHLRNSMSVDLDDL--- 145 (602)
Q Consensus 96 ~~i~v~~~~g~~~~~~~~---------------------~~l~---~---~~~IvI~Tp~~L~~~l~~~~~~~l~~l--- 145 (602)
....+.+.+|........ ..+. . ..+|+|||...++..+.......+..+
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La 439 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLG 439 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhc
Confidence 245678888765322110 0111 1 168999999998855443222222222
Q ss_pred -ceEEEeCccccccCCcHHHHHHHHHhC-CCCcceeeeeccCChhHHHHHHHhcCC----------CeEEecCCCCC---
Q 007481 146 -AVLILDEADRLLELGFSAEIHELVRLC-PKRRQTMLFSATLTEDVDELIKLSLTK----------PLRLSADPSAK--- 210 (602)
Q Consensus 146 -~llVlDEah~l~~~gf~~~i~~i~~~~-~~~~q~il~SAT~~~~~~~l~~~~l~~----------p~~~~~~~~~~--- 210 (602)
++|||||+|-+..+ ....+..+++.+ .....+|+||||+|....+.....+.. |..........
T Consensus 440 ~svvIiDEVHAyD~y-m~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~ 518 (878)
T PRK09694 440 RSVLIVDEVHAYDAY-MYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRF 518 (878)
T ss_pred cCeEEEechhhCCHH-HHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceee
Confidence 48999999987553 233444444432 345679999999998776543222111 11000000000
Q ss_pred ----CCCC-ceeeeeeechh--h-hhhHHHHHHHHhhh-cCCCeEEEEeCcHHHHHHHHHHHhhcC---CceeeccCCCC
Q 007481 211 ----RPST-LTEEVVRIRRM--R-EVNQEAVLLSLCSK-TFTSKVIIFSGTKQAAHRLKILFGLAA---LKAAELHGNLT 278 (602)
Q Consensus 211 ----~~~~-l~~~~~~~~~~--~-~~~k~~~l~~l~~~-~~~~kvIIF~~s~~~a~~l~~~L~~~g---~~~~~lhg~~~ 278 (602)
.+.. -....+.+... . .......+..+... ..++++||||||++.|..++..|...+ ..+..+||.++
T Consensus 519 ~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~ 598 (878)
T PRK09694 519 DLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFT 598 (878)
T ss_pred eccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCC
Confidence 0000 00111111110 0 01112333334332 346789999999999999999998764 67999999999
Q ss_pred HHHH----HHHHHHH-hcCC---ceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCC
Q 007481 279 QAQR----LEALELF-RKQH---VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 339 (602)
Q Consensus 279 ~~eR----~~il~~F-~~g~---~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~ 339 (602)
..+| .++++.| ++|+ ..|||||+++++|||| ++++||...+| ...++||+||++|.++
T Consensus 599 ~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 599 LNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 9999 4577788 5665 4799999999999999 58999998888 6799999999999875
No 90
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=5.1e-29 Score=275.95 Aligned_cols=350 Identities=18% Similarity=0.216 Sum_probs=262.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CCEEEEcCCCchHHHHHHHHHHHHHHcCCCC-----CCCcEEEEEcCh
Q 007481 5 LSRPLLRACEALGYSKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKR-----IPAIRVLILTPT 78 (602)
Q Consensus 5 L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g-~dvii~a~TGSGKT~a~~l~il~~l~~~~~~-----~~~~~vLiL~Pt 78 (602)
||.|-..++ .|+..+.++|..+.+.++.+ .++++|||||+|||.++++.+++.+..+.+. ....++++++|.
T Consensus 296 lP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPm 373 (1674)
T KOG0951|consen 296 LPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPM 373 (1674)
T ss_pred Ccchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeH
Confidence 444555554 46777999999999999986 6899999999999999999999998876542 345689999999
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCC-CCcceEEEeCccccc
Q 007481 79 RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDL-DDLAVLILDEADRLL 157 (602)
Q Consensus 79 r~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l-~~l~llVlDEah~l~ 157 (602)
.+|+..|...|.+.....+++|.-.+|+.....+. .....|+||||+.+--.-+++..... +-++++|+||.|.+-
T Consensus 374 KaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLh 450 (1674)
T KOG0951|consen 374 KALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLH 450 (1674)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcc
Confidence 99999999998888888899999999986643322 24578999999998655555443332 357899999999875
Q ss_pred cCCcHHHHHHHHH-------hCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhH
Q 007481 158 ELGFSAEIHELVR-------LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ 230 (602)
Q Consensus 158 ~~gf~~~i~~i~~-------~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k 230 (602)
+. ....+..|.. .....++++++|||+|+..+- ......+|--++......+|..+.|.++-+.......+
T Consensus 451 Dd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV-~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~ 528 (1674)
T KOG0951|consen 451 DD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDV-ASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKR 528 (1674)
T ss_pred cc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhh-HHHhccCcccccccCcccCcCCccceEeccccCCchHH
Confidence 43 3444544432 234577899999999976543 33333333334444556799999999998876544444
Q ss_pred HHHH-----HHHhhhcCCCeEEEEeCcHHHHHHHHHHHhh-------------------------------------cCC
Q 007481 231 EAVL-----LSLCSKTFTSKVIIFSGTKQAAHRLKILFGL-------------------------------------AAL 268 (602)
Q Consensus 231 ~~~l-----~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~-------------------------------------~g~ 268 (602)
.... ..++.....++||||+.+++++...+..++. +.+
T Consensus 529 ~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpy 608 (1674)
T KOG0951|consen 529 FQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPY 608 (1674)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhc
Confidence 3333 3334455568999999998877666554431 124
Q ss_pred ceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEE----EcCCC------CChhhHHHHhhhcccCC
Q 007481 269 KAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI----NYACP------RDLTSYVHRVGRTARAG 338 (602)
Q Consensus 269 ~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI----~~d~p------~s~~~yiQriGRa~R~g 338 (602)
..+.+|.||+..+|..+...|++|.++|||+|-.+++|+|+|..+++| .||+. .++...+||.||+||.+
T Consensus 609 gfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~ 688 (1674)
T KOG0951|consen 609 GFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQ 688 (1674)
T ss_pred cceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCc
Confidence 578899999999999999999999999999999999999999988887 46654 38999999999999965
Q ss_pred --CcceEEEEEecCcHHHHHHHHHH
Q 007481 339 --REGYAVTFVTDNDRSLLKAIAKR 361 (602)
Q Consensus 339 --~~g~~i~l~~~~d~~~l~~i~~~ 361 (602)
..|..+++.+.++..++..+.++
T Consensus 689 ~D~~gegiiit~~se~qyyls~mn~ 713 (1674)
T KOG0951|consen 689 YDTCGEGIIITDHSELQYYLSLMNQ 713 (1674)
T ss_pred cCcCCceeeccCchHhhhhHHhhhh
Confidence 45777777777776666665543
No 91
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.4e-27 Score=266.18 Aligned_cols=322 Identities=19% Similarity=0.202 Sum_probs=237.4
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 15 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 15 ~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
.+|+ .|++.|--..-.+..|+ |+.+.||+|||+++.+|++-..+.. ..|-|++||..||.|.++++..+..
T Consensus 77 ~lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G------~~V~IvTpn~yLA~rd~e~~~~l~~ 147 (830)
T PRK12904 77 VLGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTG------KGVHVVTVNDYLAKRDAEWMGPLYE 147 (830)
T ss_pred HhCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcC------CCEEEEecCHHHHHHHHHHHHHHHh
Confidence 3464 48888887776666664 8999999999999999996444432 2477999999999999999999999
Q ss_pred cCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHH-HHHHHccCCC-----CCCCcceEEEeCccccc-cCC-------
Q 007481 95 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSV-----DLDDLAVLILDEADRLL-ELG------- 160 (602)
Q Consensus 95 ~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L-~~~l~~~~~~-----~l~~l~llVlDEah~l~-~~g------- 160 (602)
+.++++++++|+.+...+...+ .++|+++||++| +|+|+..... .+..+.++||||||.|+ +..
T Consensus 148 ~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiS 225 (830)
T PRK12904 148 FLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIIS 225 (830)
T ss_pred hcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeE
Confidence 9999999999998887766654 489999999999 9999875432 36778899999999843 100
Q ss_pred --------cHHHHHHHHHhCC-----------------------------------------------------------
Q 007481 161 --------FSAEIHELVRLCP----------------------------------------------------------- 173 (602)
Q Consensus 161 --------f~~~i~~i~~~~~----------------------------------------------------------- 173 (602)
+...+..+...+.
T Consensus 226 g~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~ 305 (830)
T PRK12904 226 GPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDV 305 (830)
T ss_pred CCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCC
Confidence 0000011111000
Q ss_pred ----------------------------------------------------------CCcceeeeeccCChhHHHHHHH
Q 007481 174 ----------------------------------------------------------KRRQTMLFSATLTEDVDELIKL 195 (602)
Q Consensus 174 ----------------------------------------------------------~~~q~il~SAT~~~~~~~l~~~ 195 (602)
.-..+.+||+|......++...
T Consensus 306 dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~i 385 (830)
T PRK12904 306 DYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREI 385 (830)
T ss_pred cEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHH
Confidence 0014567788876665555555
Q ss_pred hcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhh--cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeec
Q 007481 196 SLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAEL 273 (602)
Q Consensus 196 ~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~--~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~l 273 (602)
+-...+.+.. . .|......-..+. .....+...+...+.. ..+.++||||+|+..++.++..|...|+++..|
T Consensus 386 Y~l~vv~IPt---n-kp~~r~d~~d~i~-~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vL 460 (830)
T PRK12904 386 YNLDVVVIPT---N-RPMIRIDHPDLIY-KTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVL 460 (830)
T ss_pred hCCCEEEcCC---C-CCeeeeeCCCeEE-ECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEec
Confidence 4333332221 1 1111111111111 1233445555555543 457799999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCC--------------------------------------ccEE
Q 007481 274 HGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG--------------------------------------VQTV 315 (602)
Q Consensus 274 hg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~--------------------------------------v~~V 315 (602)
|+. +.+|+..+..|..+...|+||||+++||+||+- =-+|
T Consensus 461 nak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhV 538 (830)
T PRK12904 461 NAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHV 538 (830)
T ss_pred cCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEE
Confidence 995 889999999999999999999999999999953 2478
Q ss_pred EEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHH
Q 007481 316 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 354 (602)
Q Consensus 316 I~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~ 354 (602)
|....|.|...--|-.||+||.|.+|.+..|++-.|.-+
T Consensus 539 igTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l~ 577 (830)
T PRK12904 539 IGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLM 577 (830)
T ss_pred EecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHHH
Confidence 889999999999999999999999999999999877544
No 92
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=9.7e-28 Score=257.37 Aligned_cols=322 Identities=22% Similarity=0.246 Sum_probs=240.3
Q ss_pred CCCHHHHHHH-HHCCCCCCcHHHHHHHHHHhcC------CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEc
Q 007481 4 NLSRPLLRAC-EALGYSKPTPIQAACIPLALTG------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 76 (602)
Q Consensus 4 ~L~~~ll~~l-~~~g~~~pt~~Q~~~i~~~l~g------~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~ 76 (602)
..+..+++.+ .+++|. ||..|++++..|+.. -+-++.|.-|||||+++++.++..+. .|.++..++
T Consensus 246 ~~~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~------~G~Q~ALMA 318 (677)
T COG1200 246 PANGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE------AGYQAALMA 318 (677)
T ss_pred CccHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH------cCCeeEEec
Confidence 3444555544 788887 999999999999874 46789999999999999999988774 466899999
Q ss_pred ChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHH----HHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeC
Q 007481 77 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE----TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 152 (602)
Q Consensus 77 Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~----~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDE 152 (602)
||--||.|.++.+.+|....+++|..++|........ ....+..+|||+|-- ++. ..+.+.++.++|+||
T Consensus 319 PTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA----LiQ--d~V~F~~LgLVIiDE 392 (677)
T COG1200 319 PTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA----LIQ--DKVEFHNLGLVIIDE 392 (677)
T ss_pred cHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcch----hhh--cceeecceeEEEEec
Confidence 9999999999999999999999999999987654333 223456899999922 222 257889999999999
Q ss_pred ccccccCCcHHHHHHHHHhCCC-CcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeee-eeechhhhhhH
Q 007481 153 ADRLLELGFSAEIHELVRLCPK-RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMREVNQ 230 (602)
Q Consensus 153 ah~l~~~gf~~~i~~i~~~~~~-~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~k 230 (602)
-|+ |.-.-...+..-.. .+.++.|||||-|..-.+.-....+.-.+.. .|++..... ..+. ....
T Consensus 393 QHR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdE-----lP~GRkpI~T~~i~---~~~~ 459 (677)
T COG1200 393 QHR-----FGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDE-----LPPGRKPITTVVIP---HERR 459 (677)
T ss_pred ccc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhcc-----CCCCCCceEEEEec---cccH
Confidence 999 54444444444444 6789999999987766555433322221111 222211111 1111 1233
Q ss_pred HHHHHHHhhh-cCCCeEEEEeCcHHH--------HHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHHhcCCceEEEE
Q 007481 231 EAVLLSLCSK-TFTSKVIIFSGTKQA--------AHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 299 (602)
Q Consensus 231 ~~~l~~l~~~-~~~~kvIIF~~s~~~--------a~~l~~~L~~~--g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVa 299 (602)
..++..+... ..+.++.+.|+-+++ |..++..|+.. ++.+..+||.|+..+..++++.|++|+++||||
T Consensus 460 ~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVa 539 (677)
T COG1200 460 PEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVA 539 (677)
T ss_pred HHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEE
Confidence 3334333332 246788888986554 44556666533 567999999999999999999999999999999
Q ss_pred cCccccccCcCCccEEEEcCCCC-ChhhHHHHhhhcccCCCcceEEEEEecCc
Q 007481 300 TDVAARGLDIIGVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVTDND 351 (602)
Q Consensus 300 T~~~~~GlDip~v~~VI~~d~p~-s~~~yiQriGRa~R~g~~g~~i~l~~~~d 351 (602)
|.+.+.|+|+|+++++|+.|+-. -..+.-|-.||.||.+..++|++++.+..
T Consensus 540 TTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 540 TTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred eeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 99999999999999999988764 67888999999999888999999998876
No 93
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=1.9e-28 Score=267.29 Aligned_cols=299 Identities=17% Similarity=0.204 Sum_probs=197.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHH---HHH
Q 007481 39 CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ---ETA 115 (602)
Q Consensus 39 ii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~---~~~ 115 (602)
++.||||||||.+|+..+ ...+.. +.++|||+|+++|+.|+++.++.. .+..+..++++.+..+. |..
T Consensus 1 LL~g~TGsGKT~v~l~~i-~~~l~~-----g~~vLvlvP~i~L~~Q~~~~l~~~---f~~~v~vlhs~~~~~er~~~~~~ 71 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAI-EKVLAL-----GKSVLVLVPEIALTPQMIQRFKYR---FGSQVAVLHSGLSDSEKLQAWRK 71 (505)
T ss_pred CccCCCCCCHHHHHHHHH-HHHHHc-----CCeEEEEeCcHHHHHHHHHHHHHH---hCCcEEEEECCCCHHHHHHHHHH
Confidence 478999999999985544 444432 347999999999999999998864 35678889998876543 333
Q ss_pred H-cCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC-----cH-HHHHHHHHhCCCCcceeeeeccCChh
Q 007481 116 L-RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-----FS-AEIHELVRLCPKRRQTMLFSATLTED 188 (602)
Q Consensus 116 l-~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g-----f~-~~i~~i~~~~~~~~q~il~SAT~~~~ 188 (602)
+ .+.++|||+|+..++ ..+.++++|||||+|...-.+ |. ..+..+ .......+++++||||+.+
T Consensus 72 ~~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~-ra~~~~~~vil~SATPsle 142 (505)
T TIGR00595 72 VKNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVY-RAKKFNCPVVLGSATPSLE 142 (505)
T ss_pred HHcCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHHHH-HHHhcCCCEEEEeCCCCHH
Confidence 3 355799999988763 346788999999999865322 11 222222 2333578899999998865
Q ss_pred HHHHHHHhcCCCeEE-ecCCCCCCCCCceeeeeeechhh--hhhHHHHHHHHhhh-cCCCeEEEEeCcHHH---------
Q 007481 189 VDELIKLSLTKPLRL-SADPSAKRPSTLTEEVVRIRRMR--EVNQEAVLLSLCSK-TFTSKVIIFSGTKQA--------- 255 (602)
Q Consensus 189 ~~~l~~~~l~~p~~~-~~~~~~~~~~~l~~~~~~~~~~~--~~~k~~~l~~l~~~-~~~~kvIIF~~s~~~--------- 255 (602)
....+... .... ...............++...... ......++..+.+. ..+.++|||+|++-.
T Consensus 143 s~~~~~~g---~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~C 219 (505)
T TIGR00595 143 SYHNAKQK---AYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSC 219 (505)
T ss_pred HHHHHhcC---CeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhC
Confidence 54433221 1111 11100000001111122221110 00111222222222 235689999776543
Q ss_pred ---------------------------------------------------HHHHHHHHhhc--CCceeeccCCCCHHHH
Q 007481 256 ---------------------------------------------------AHRLKILFGLA--ALKAAELHGNLTQAQR 282 (602)
Q Consensus 256 ---------------------------------------------------a~~l~~~L~~~--g~~~~~lhg~~~~~eR 282 (602)
++.+.+.|... +.++..+|+++++..+
T Consensus 220 g~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~ 299 (505)
T TIGR00595 220 GYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKG 299 (505)
T ss_pred cCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCcc
Confidence 46667777665 7789999999988766
Q ss_pred --HHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCCC------------ChhhHHHHhhhcccCCCcceEEEEEe
Q 007481 283 --LEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR------------DLTSYVHRVGRTARAGREGYAVTFVT 348 (602)
Q Consensus 283 --~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~------------s~~~yiQriGRa~R~g~~g~~i~l~~ 348 (602)
..+++.|++|+.+|||+|+++++|+|+|++++|+.+|.+. ....|+|++||+||.+..|.+++...
T Consensus 300 ~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 300 AHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred HHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 8999999999999999999999999999999986544432 24678999999999999999997766
Q ss_pred cCcHHHHHHH
Q 007481 349 DNDRSLLKAI 358 (602)
Q Consensus 349 ~~d~~~l~~i 358 (602)
..+...+..+
T Consensus 380 ~p~~~~~~~~ 389 (505)
T TIGR00595 380 NPNHPAIQAA 389 (505)
T ss_pred CCCCHHHHHH
Confidence 5555555444
No 94
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=9.8e-27 Score=258.50 Aligned_cols=322 Identities=20% Similarity=0.230 Sum_probs=229.2
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 15 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 15 ~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
.+|+ .|++.|--+.-.+..|+ |+.+.||+|||+++.+|++...+. +..|-|++||-.||.|-++++..+..
T Consensus 76 ~~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~------G~~v~vvT~neyLA~Rd~e~~~~~~~ 146 (796)
T PRK12906 76 VLGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT------GKGVHVVTVNEYLSSRDATEMGELYR 146 (796)
T ss_pred HhCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc------CCCeEEEeccHHHHHhhHHHHHHHHH
Confidence 4464 58898988777776666 999999999999999998877764 34589999999999999999999999
Q ss_pred cCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHH-HHHHHccCCC-----CCCCcceEEEeCccccc-cCC-------
Q 007481 95 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSV-----DLDDLAVLILDEADRLL-ELG------- 160 (602)
Q Consensus 95 ~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L-~~~l~~~~~~-----~l~~l~llVlDEah~l~-~~g------- 160 (602)
+.|++|+++.++.+....... ..+||+.+|...| .|+|+..... -...+.+.||||+|.++ +..
T Consensus 147 ~LGl~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiis 224 (796)
T PRK12906 147 WLGLTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIIS 224 (796)
T ss_pred hcCCeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecC
Confidence 999999999998776654443 3579999998776 5666653222 23557889999999743 100
Q ss_pred --------cHHHHHHHHHhCC-----------------------------------------------------------
Q 007481 161 --------FSAEIHELVRLCP----------------------------------------------------------- 173 (602)
Q Consensus 161 --------f~~~i~~i~~~~~----------------------------------------------------------- 173 (602)
+...+..+...+.
T Consensus 225 g~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~A 304 (796)
T PRK12906 225 GQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQA 304 (796)
T ss_pred CCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHH
Confidence 0000000000000
Q ss_pred ---------------------------------------------------------------------CCcceeeeecc
Q 007481 174 ---------------------------------------------------------------------KRRQTMLFSAT 184 (602)
Q Consensus 174 ---------------------------------------------------------------------~~~q~il~SAT 184 (602)
.-..+.+||+|
T Consensus 305 l~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGT 384 (796)
T PRK12906 305 LRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGT 384 (796)
T ss_pred HHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCC
Confidence 00134566666
Q ss_pred CChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhh--hcCCCeEEEEeCcHHHHHHHHHH
Q 007481 185 LTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKIL 262 (602)
Q Consensus 185 ~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~--~~~~~kvIIF~~s~~~a~~l~~~ 262 (602)
......++...+-...+.+ ++. .|......-..+.. ....+...+...+. ...+.++||||+|+..++.++..
T Consensus 385 a~~e~~Ef~~iY~l~vv~I---Ptn-kp~~r~d~~d~i~~-t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~ 459 (796)
T PRK12906 385 AKTEEEEFREIYNMEVITI---PTN-RPVIRKDSPDLLYP-TLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHL 459 (796)
T ss_pred CHHHHHHHHHHhCCCEEEc---CCC-CCeeeeeCCCeEEc-CHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHH
Confidence 6554444443332222211 111 11111111001111 22334444544443 23578999999999999999999
Q ss_pred HhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCc---CCcc-----EEEEcCCCCChhhHHHHhhhc
Q 007481 263 FGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI---IGVQ-----TVINYACPRDLTSYVHRVGRT 334 (602)
Q Consensus 263 L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDi---p~v~-----~VI~~d~p~s~~~yiQriGRa 334 (602)
|...|+++..||+.+.+.++..+...++.|. |+|||++++||+|| ++|. +||+++.|.|...|.|++|||
T Consensus 460 L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRt 537 (796)
T PRK12906 460 LDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRS 537 (796)
T ss_pred HHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhh
Confidence 9999999999999999888888888877776 99999999999999 4888 999999999999999999999
Q ss_pred ccCCCcceEEEEEecCcHHH
Q 007481 335 ARAGREGYAVTFVTDNDRSL 354 (602)
Q Consensus 335 ~R~g~~g~~i~l~~~~d~~~ 354 (602)
||.|.+|.+.+|++..|.-+
T Consensus 538 GRqG~~G~s~~~~sleD~l~ 557 (796)
T PRK12906 538 GRQGDPGSSRFYLSLEDDLM 557 (796)
T ss_pred ccCCCCcceEEEEeccchHH
Confidence 99999999999999887544
No 95
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.96 E-value=1.2e-27 Score=267.12 Aligned_cols=203 Identities=19% Similarity=0.254 Sum_probs=150.9
Q ss_pred cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcC-
Q 007481 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA- 319 (602)
Q Consensus 241 ~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d- 319 (602)
..+.++||||+|+..++.++.+|...|+.+..+||++++.+|.+++..|+.|+++|||||+++++|+|+|++++||++|
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Da 519 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDA 519 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCc
Confidence 3467999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ----CCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 007481 320 ----CPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQ 395 (602)
Q Consensus 320 ----~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 395 (602)
.|.+..+|+||+|||||. ..|.+++|++..+..+...|.+.....-.+..++..+...+.++++.+.+.+.....
T Consensus 520 difG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~~~~~~iq~~~~~~~~~~p~~~~~~~~~~~~~~~~ 598 (655)
T TIGR00631 520 DKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEETERRRKIQMAYNEEHGITPQTIRKPIRDILDIELK 598 (655)
T ss_pred ccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHHHhHHHHHhhhhhhcCCCCcccCcchHHHhhhhhh
Confidence 799999999999999996 689999999999999999998773333333555655555555555555554432111
Q ss_pred HHH-HHHH----HHHHHHHHHHHHHHHHhHHHHhcCccccc-cccHHHHHHHHHHhHHH
Q 007481 396 EER-EERI----LRKAEMEATKAENMIAHKEEIFARPKRTW-FVTEKEKKLAVKADKAS 448 (602)
Q Consensus 396 ~e~-~~~~----~~~~e~~~~~~e~~~~~~~~~~~~~~~~~-f~~~~~~~~~~~~~~~~ 448 (602)
.+. .... .....+.....+.++..+.+.|...+..+ |+. ++..++.+..
T Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~M~~aa~~l~FE~----Aa~~RD~i~~ 653 (655)
T TIGR00631 599 EKEDAAKKKKKGEDLSDLSKKELKKLIKQLEKEMKQAARNLEFEE----AARLRDEILE 653 (655)
T ss_pred cccchhhccccccccccCCHHHHHHHHHHHHHHHHHHHHccCHHH----HHHHHHHHHh
Confidence 110 0000 00001122334455666666666666555 554 5555555543
No 96
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=1.3e-26 Score=261.34 Aligned_cols=322 Identities=21% Similarity=0.226 Sum_probs=250.2
Q ss_pred CCCCHHHHHHH-HHCCCCCCcHHHHHHHHHHhc----C--CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEE
Q 007481 3 LNLSRPLLRAC-EALGYSKPTPIQAACIPLALT----G--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 75 (602)
Q Consensus 3 l~L~~~ll~~l-~~~g~~~pt~~Q~~~i~~~l~----g--~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL 75 (602)
+..+.+....+ .+++|. -||-|..||..+.. + -|-+|||.-|.|||-+++=+++.... .+.+|.||
T Consensus 577 f~~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~------~GKQVAvL 649 (1139)
T COG1197 577 FPPDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM------DGKQVAVL 649 (1139)
T ss_pred CCCChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc------CCCeEEEE
Confidence 34455555555 567777 79999999999886 3 48999999999999998777776653 45689999
Q ss_pred cChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHH----cCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEe
Q 007481 76 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 151 (602)
Q Consensus 76 ~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l----~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlD 151 (602)
|||.-||.|.++.|+.-....+++|..++--.+..++...+ .+..||||+| ..+|. .++.+.++.+||||
T Consensus 650 VPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT----HrLL~--kdv~FkdLGLlIID 723 (1139)
T COG1197 650 VPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT----HRLLS--KDVKFKDLGLLIID 723 (1139)
T ss_pred cccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec----hHhhC--CCcEEecCCeEEEe
Confidence 99999999999999987777889999888877777776554 4668999999 23333 47889999999999
Q ss_pred CccccccCCcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhh-hhhH
Q 007481 152 EADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR-EVNQ 230 (602)
Q Consensus 152 Eah~l~~~gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~k 230 (602)
|=|+ |.-.-.+-++.+..+.-++-+||||-|..-.+.-..+.+--.+...+.. +.+ .+ ..+.+.. ...+
T Consensus 724 EEqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~-R~p--V~--T~V~~~d~~~ir 793 (1139)
T COG1197 724 EEQR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPED-RLP--VK--TFVSEYDDLLIR 793 (1139)
T ss_pred chhh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCC-Ccc--eE--EEEecCChHHHH
Confidence 9999 5555556666677788899999999887776665555443333221111 111 11 1222222 2233
Q ss_pred HHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccC
Q 007481 231 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 308 (602)
Q Consensus 231 ~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~--g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlD 308 (602)
.+++..+ ..++++...+|..+..+.++..|+.+ ...+++.||.|+..+-++++.+|.+|+++|||||.+.+.|||
T Consensus 794 eAI~REl---~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGID 870 (1139)
T COG1197 794 EAILREL---LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGID 870 (1139)
T ss_pred HHHHHHH---hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcC
Confidence 3333322 34789999999999999999999876 567899999999999999999999999999999999999999
Q ss_pred cCCccEEEEcCCCC-ChhhHHHHhhhcccCCCcceEEEEEecC
Q 007481 309 IIGVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVTDN 350 (602)
Q Consensus 309 ip~v~~VI~~d~p~-s~~~yiQriGRa~R~g~~g~~i~l~~~~ 350 (602)
||+++++|+.+... -..+..|..||.||.+..++||+++.+.
T Consensus 871 IPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 871 IPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred CCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 99999999877665 6889999999999999999999998864
No 97
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=1.5e-26 Score=251.27 Aligned_cols=325 Identities=19% Similarity=0.231 Sum_probs=241.2
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 15 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 15 ~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
..+|. |-++|++||-++..|.+|.+.|+|.+|||+++-.++.-.- ..++|++|-+|-.+|..|-++.|+.-
T Consensus 293 ~~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq------~h~TR~iYTSPIKALSNQKfRDFk~t-- 363 (1248)
T KOG0947|consen 293 IYPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ------KHMTRTIYTSPIKALSNQKFRDFKET-- 363 (1248)
T ss_pred hCCCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH------hhccceEecchhhhhccchHHHHHHh--
Confidence 44554 8999999999999999999999999999988665553221 24668999999999999999998873
Q ss_pred cCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCC
Q 007481 95 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK 174 (602)
Q Consensus 95 ~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~ 174 (602)
|.++ .+++|+.. +...+.++|+|.+.|..+|.++.++ ++++++||+||+|.+.+....-.+++++-.+|.
T Consensus 364 F~Dv--gLlTGDvq-------inPeAsCLIMTTEILRsMLYrgadl-iRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~ 433 (1248)
T KOG0947|consen 364 FGDV--GLLTGDVQ-------INPEASCLIMTTEILRSMLYRGADL-IRDVEFVIFDEVHYINDVERGVVWEEVIIMLPR 433 (1248)
T ss_pred cccc--ceeeccee-------eCCCcceEeehHHHHHHHHhcccch-hhccceEEEeeeeecccccccccceeeeeeccc
Confidence 3333 47888754 4567899999999999999886443 678999999999999887777788889999999
Q ss_pred CcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechh-----------------------------
Q 007481 175 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRM----------------------------- 225 (602)
Q Consensus 175 ~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~----------------------------- 225 (602)
..++|++|||.|+.....-+.+-.+.-.+.+.+...+|..+.+.+..-...
T Consensus 434 HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~ 513 (1248)
T KOG0947|consen 434 HVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFV 513 (1248)
T ss_pred cceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccc
Confidence 999999999999765544444433333344444445555555443321000
Q ss_pred -----------------------hh--------h-h----HHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCC-
Q 007481 226 -----------------------RE--------V-N----QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAAL- 268 (602)
Q Consensus 226 -----------------------~~--------~-~----k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~- 268 (602)
.. . . ....+...+....--++||||-+++.|+..+.+|...++
T Consensus 514 ~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~ 593 (1248)
T KOG0947|consen 514 DVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLT 593 (1248)
T ss_pred ccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcc
Confidence 00 0 0 011122222233334899999999999999888854321
Q ss_pred --------------------------------------ceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcC
Q 007481 269 --------------------------------------KAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 310 (602)
Q Consensus 269 --------------------------------------~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip 310 (602)
.++++||++-+.-.+-+.-.|..|-++||+||..+++|+|.|
T Consensus 594 ~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMP 673 (1248)
T KOG0947|consen 594 DSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMP 673 (1248)
T ss_pred cchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCC
Confidence 367899999999999999999999999999999999999999
Q ss_pred CccEEEEc----C----CCCChhhHHHHhhhcccCC--CcceEEEEEecC--cHHHHHHH
Q 007481 311 GVQTVINY----A----CPRDLTSYVHRVGRTARAG--REGYAVTFVTDN--DRSLLKAI 358 (602)
Q Consensus 311 ~v~~VI~~----d----~p~s~~~yiQriGRa~R~g--~~g~~i~l~~~~--d~~~l~~i 358 (602)
.-.+|+.- | ---.+-.|.|+.|||||.| ..|++|++.... +...++.+
T Consensus 674 ARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~l 733 (1248)
T KOG0947|consen 674 ARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRL 733 (1248)
T ss_pred ceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhH
Confidence 88777731 1 1127889999999999987 568888887654 44445444
No 98
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.95 E-value=1.5e-26 Score=270.46 Aligned_cols=309 Identities=20% Similarity=0.262 Sum_probs=197.4
Q ss_pred CCCcHHHHHHHHHHhc----C-CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHh
Q 007481 19 SKPTPIQAACIPLALT----G-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 93 (602)
Q Consensus 19 ~~pt~~Q~~~i~~~l~----g-~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~ 93 (602)
..|++||.+||..+.. | +.++++++||||||.++ +.++.+++... ...+||||+|+.+|+.|+.+.|..+.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~ta-i~li~~L~~~~---~~~rVLfLvDR~~L~~Qa~~~F~~~~ 487 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTA-IALMYRLLKAK---RFRRILFLVDRSALGEQAEDAFKDTK 487 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHH-HHHHHHHHhcC---ccCeEEEEecHHHHHHHHHHHHHhcc
Confidence 3599999999987763 3 67999999999999874 55555555432 23489999999999999999998763
Q ss_pred hcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHcc----CCCCCCCcceEEEeCcccccc---------CC
Q 007481 94 QFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS----MSVDLDDLAVLILDEADRLLE---------LG 160 (602)
Q Consensus 94 ~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~----~~~~l~~l~llVlDEah~l~~---------~g 160 (602)
......+..+++..... .........|+|+|++.|...+... ..+.+..+++||+||||+... .+
T Consensus 488 ~~~~~~~~~i~~i~~L~--~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~ 565 (1123)
T PRK11448 488 IEGDQTFASIYDIKGLE--DKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQ 565 (1123)
T ss_pred cccccchhhhhchhhhh--hhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhc
Confidence 22221222122211111 1112345789999999998765321 124578899999999999531 11
Q ss_pred ------cHHHHHHHHHhCCCCcceeeeeccCChhHHHH-------------HHHh-cC---CCeEEecCCCC----CCCC
Q 007481 161 ------FSAEIHELVRLCPKRRQTMLFSATLTEDVDEL-------------IKLS-LT---KPLRLSADPSA----KRPS 213 (602)
Q Consensus 161 ------f~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l-------------~~~~-l~---~p~~~~~~~~~----~~~~ 213 (602)
+...+..++.++. ...|+|||||......+ +... +. .|+.+...... ....
T Consensus 566 ~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~ 643 (1123)
T PRK11448 566 FRDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKG 643 (1123)
T ss_pred cchhhhHHHHHHHHHhhcC--ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccccccccc
Confidence 1345566666653 46799999997443221 1111 11 12222210000 0000
Q ss_pred C----c---eeee--eeech-----hhhhhH--------HHH---HHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhc--
Q 007481 214 T----L---TEEV--VRIRR-----MREVNQ--------EAV---LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA-- 266 (602)
Q Consensus 214 ~----l---~~~~--~~~~~-----~~~~~k--------~~~---l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~-- 266 (602)
. . ...+ ..+.. .....+ ..+ +...+....++++||||.+..+|+.+...|...
T Consensus 644 e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~ 723 (1123)
T PRK11448 644 EEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFK 723 (1123)
T ss_pred chhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHH
Confidence 0 0 0000 00000 000000 001 111122223479999999999999988877643
Q ss_pred ----CC---ceeeccCCCCHHHHHHHHHHHhcCCc-eEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccC
Q 007481 267 ----AL---KAAELHGNLTQAQRLEALELFRKQHV-DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 337 (602)
Q Consensus 267 ----g~---~~~~lhg~~~~~eR~~il~~F~~g~~-~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~ 337 (602)
++ .+..+||+++ ++..++++|+++.. .|||+++++.+|+|+|.|++||++.++.|...|+||+||+.|.
T Consensus 724 ~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~ 800 (1123)
T PRK11448 724 KKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRL 800 (1123)
T ss_pred hhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccC
Confidence 22 4556888875 46789999999877 6899999999999999999999999999999999999999995
No 99
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.95 E-value=2.4e-26 Score=263.97 Aligned_cols=326 Identities=18% Similarity=0.229 Sum_probs=218.9
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhc
Q 007481 20 KPTPIQAACIPLAL----TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 95 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l----~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~ 95 (602)
+++|||.+.+.+++ .|.++|++..+|.|||+.. +.++..+..... ...++|||||.. +..||.+.+..|+.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQa-IalL~~L~~~~~--~~gp~LIVvP~S-lL~nW~~Ei~kw~p- 243 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT-ISLLGYLHEYRG--ITGPHMVVAPKS-TLGNWMNEIRRFCP- 243 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHH-HHHHHHHHHhcC--CCCCEEEEeChH-HHHHHHHHHHHHCC-
Confidence 68999999999886 4789999999999999875 444444432211 223589999985 55789999998864
Q ss_pred CCceEEEEECCCCHHHHH---HHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhC
Q 007481 96 TDIRCCLVVGGLSTKMQE---TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172 (602)
Q Consensus 96 ~~i~v~~~~g~~~~~~~~---~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~ 172 (602)
.+.+..++|........ .......+|+|+|++.+...... +.--.|++|||||||++.+.. ......+..+
T Consensus 244 -~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~---L~k~~W~~VIvDEAHrIKN~~--Sklskalr~L 317 (1033)
T PLN03142 244 -VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA---LKRFSWRYIIIDEAHRIKNEN--SLLSKTMRLF 317 (1033)
T ss_pred -CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH---hccCCCCEEEEcCccccCCHH--HHHHHHHHHh
Confidence 56677777754332211 11234579999999998765432 223357899999999988753 2333444444
Q ss_pred CCCcceeeeeccCCh-hHHHHHHH-hcCCC----------------------------------eEEec---CCCCCCCC
Q 007481 173 PKRRQTMLFSATLTE-DVDELIKL-SLTKP----------------------------------LRLSA---DPSAKRPS 213 (602)
Q Consensus 173 ~~~~q~il~SAT~~~-~~~~l~~~-~l~~p----------------------------------~~~~~---~~~~~~~~ 213 (602)
. ....+++|+||-. .+.++..+ .+..| +.+.. +.....|
T Consensus 318 ~-a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LP- 395 (1033)
T PLN03142 318 S-TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP- 395 (1033)
T ss_pred h-cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCC-
Confidence 3 3446899999853 22222111 00111 00000 0000000
Q ss_pred Cceeeeeeech------------------------------------------------------------hhhhhHHHH
Q 007481 214 TLTEEVVRIRR------------------------------------------------------------MREVNQEAV 233 (602)
Q Consensus 214 ~l~~~~~~~~~------------------------------------------------------------~~~~~k~~~ 233 (602)
......+.+.. .....+..+
T Consensus 396 pK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~l 475 (1033)
T PLN03142 396 PKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVL 475 (1033)
T ss_pred CceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHH
Confidence 00111111110 000122223
Q ss_pred HHHHhh--hcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC---CceEEEEcCccccccC
Q 007481 234 LLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ---HVDFLIATDVAARGLD 308 (602)
Q Consensus 234 l~~l~~--~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g---~~~iLVaT~~~~~GlD 308 (602)
|..++. ...+.+||||+.....+..|..+|...|+.++.+||+++..+|..+++.|+.. .+-+|++|.+++.|||
T Consensus 476 LdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGIN 555 (1033)
T PLN03142 476 LDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGIN 555 (1033)
T ss_pred HHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCc
Confidence 333333 23467999999999999999999999999999999999999999999999863 3567899999999999
Q ss_pred cCCccEEEEcCCCCChhhHHHHhhhcccCCCc--ceEEEEEecCc--HHHHHHH
Q 007481 309 IIGVQTVINYACPRDLTSYVHRVGRTARAGRE--GYAVTFVTDND--RSLLKAI 358 (602)
Q Consensus 309 ip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~--g~~i~l~~~~d--~~~l~~i 358 (602)
+..+++||+||+|||+..+.|++||++|.|.. -.+|.|++.++ ..++...
T Consensus 556 Lt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera 609 (1033)
T PLN03142 556 LATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERA 609 (1033)
T ss_pred hhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHH
Confidence 99999999999999999999999999999976 45666677765 3444443
No 100
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.95 E-value=2.2e-25 Score=219.03 Aligned_cols=313 Identities=20% Similarity=0.231 Sum_probs=224.2
Q ss_pred CCcHHHHHHHHHHhc----CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhc
Q 007481 20 KPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 95 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~----g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~ 95 (602)
++||.|+.+-..+++ .++.|++|.||+|||.. +.+.++..+. .|.++.|.+|....|.+++..++. .+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~-----~G~~vciASPRvDVclEl~~Rlk~--aF 168 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALN-----QGGRVCIASPRVDVCLELYPRLKQ--AF 168 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHh-----cCCeEEEecCcccchHHHHHHHHH--hh
Confidence 689999999877765 58999999999999976 5677776665 456799999999999999999987 45
Q ss_pred CCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCCC
Q 007481 96 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175 (602)
Q Consensus 96 ~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~ 175 (602)
.+..+++++|+.+... ...++|+|...|+.+-.. +++|||||+|-++-..-...-..........
T Consensus 169 ~~~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk~a--------FD~liIDEVDAFP~~~d~~L~~Av~~ark~~ 233 (441)
T COG4098 169 SNCDIDLLYGDSDSYF-------RAPLVVATTHQLLRFKQA--------FDLLIIDEVDAFPFSDDQSLQYAVKKARKKE 233 (441)
T ss_pred ccCCeeeEecCCchhc-------cccEEEEehHHHHHHHhh--------ccEEEEeccccccccCCHHHHHHHHHhhccc
Confidence 5788899999866432 258999999999886654 5699999999865321111112223344456
Q ss_pred cceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHH----HHHHHHhh--hcCCCeEEEE
Q 007481 176 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE----AVLLSLCS--KTFTSKVIIF 249 (602)
Q Consensus 176 ~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~----~~l~~l~~--~~~~~kvIIF 249 (602)
--+|++|||++..+..-+...-..++.+ .......+-....++++......... ..|...++ ...+.+++||
T Consensus 234 g~~IylTATp~k~l~r~~~~g~~~~~kl--p~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF 311 (441)
T COG4098 234 GATIYLTATPTKKLERKILKGNLRILKL--PARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIF 311 (441)
T ss_pred CceEEEecCChHHHHHHhhhCCeeEeec--chhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEE
Confidence 6789999999988776543332222221 11222222233345555443322211 12333333 2345799999
Q ss_pred eCcHHHHHHHHHHHhh-cC-CceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCC--CCChh
Q 007481 250 SGTKQAAHRLKILFGL-AA-LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC--PRDLT 325 (602)
Q Consensus 250 ~~s~~~a~~l~~~L~~-~g-~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~--p~s~~ 325 (602)
++++...+.++..|+. .+ ..++.+|+. ...|.+.++.|++|++++||+|.+++||+.+|+|+++|.-.- -.+..
T Consensus 312 ~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTes 389 (441)
T COG4098 312 FPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTES 389 (441)
T ss_pred ecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHH
Confidence 9999999999999943 33 455788874 357899999999999999999999999999999999774322 24889
Q ss_pred hHHHHhhhcccCC--CcceEEEEEecCcHHHHHHHH
Q 007481 326 SYVHRVGRTARAG--REGYAVTFVTDNDRSLLKAIA 359 (602)
Q Consensus 326 ~yiQriGRa~R~g--~~g~~i~l~~~~d~~~l~~i~ 359 (602)
+.+|..||+||.- ..|.++.|...-...|.++..
T Consensus 390 aLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A~k 425 (441)
T COG4098 390 ALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQARK 425 (441)
T ss_pred HHHHHhhhccCCCcCCCCcEEEEeccchHHHHHHHH
Confidence 9999999999943 468888888777777776654
No 101
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.95 E-value=1e-25 Score=254.13 Aligned_cols=331 Identities=20% Similarity=0.214 Sum_probs=242.0
Q ss_pred HHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHH
Q 007481 12 ACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 91 (602)
Q Consensus 12 ~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~ 91 (602)
...+.||+ |-++|++++..+..|.+|+++||||||||.+.-.++...+.. +.+++|.+|..+|..|.+..+..
T Consensus 112 ~~~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~------~qrviYTsPIKALsNQKyrdl~~ 184 (1041)
T COG4581 112 PAREYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD------GQRVIYTSPIKALSNQKYRDLLA 184 (1041)
T ss_pred HHHhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc------CCceEeccchhhhhhhHHHHHHH
Confidence 34567877 999999999999999999999999999999877776665543 33599999999999999998876
Q ss_pred HhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHh
Q 007481 92 IAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL 171 (602)
Q Consensus 92 l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~ 171 (602)
......-.+++++|+.+ ++..+.|+|+|.+.|.+++... ...+..+..||+||+|.|.+..-.-.+++++-+
T Consensus 185 ~fgdv~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg-~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~ 256 (1041)
T COG4581 185 KFGDVADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRG-SESLRDIEWVVFDEVHYIGDRERGVVWEEVIIL 256 (1041)
T ss_pred Hhhhhhhhccceeccee-------eCCCCceEEeeHHHHHHHhccC-cccccccceEEEEeeeeccccccchhHHHHHHh
Confidence 43211223577888755 4577899999999999988875 577899999999999999998878888999999
Q ss_pred CCCCcceeeeeccCChhHHHHHHHh--cCCCeEEecCCCCCCCCCceeeeeeec-------hhhh---hh----------
Q 007481 172 CPKRRQTMLFSATLTEDVDELIKLS--LTKPLRLSADPSAKRPSTLTEEVVRIR-------RMRE---VN---------- 229 (602)
Q Consensus 172 ~~~~~q~il~SAT~~~~~~~l~~~~--l~~p~~~~~~~~~~~~~~l~~~~~~~~-------~~~~---~~---------- 229 (602)
+|...++++||||.++....-.+.. -..|+.+.. ...+|..+.+.+..-. .... ..
T Consensus 257 lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~--t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~ 334 (1041)
T COG4581 257 LPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVS--TEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSC 334 (1041)
T ss_pred cCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEe--ecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhc
Confidence 9999999999999986654433333 344544433 3345555554433210 0000 00
Q ss_pred -------------------------------HHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhh-------------
Q 007481 230 -------------------------------QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL------------- 265 (602)
Q Consensus 230 -------------------------------k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~------------- 265 (602)
...-+...+.....-++|+|+-++..|+.++..+..
T Consensus 335 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i 414 (1041)
T COG4581 335 FSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAI 414 (1041)
T ss_pred cchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHH
Confidence 000011112223345899999999999877554431
Q ss_pred ---------------cCC-------------ceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEE-
Q 007481 266 ---------------AAL-------------KAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI- 316 (602)
Q Consensus 266 ---------------~g~-------------~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI- 316 (602)
.++ .++++|++|-+..+..+...|..|-+.||++|.+++.|+|.|.-++|+
T Consensus 415 ~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~ 494 (1041)
T COG4581 415 REIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFT 494 (1041)
T ss_pred HHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeee
Confidence 111 245789999999999999999999999999999999999999888777
Q ss_pred ---EcC----CCCChhhHHHHhhhcccCCC--cceEEEEEecC--cHHHHHHHH
Q 007481 317 ---NYA----CPRDLTSYVHRVGRTARAGR--EGYAVTFVTDN--DRSLLKAIA 359 (602)
Q Consensus 317 ---~~d----~p~s~~~yiQriGRa~R~g~--~g~~i~l~~~~--d~~~l~~i~ 359 (602)
.+| -+-++..|.|+.||+||.|- .|.+|++..+. +.+....+.
T Consensus 495 ~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~ 548 (1041)
T COG4581 495 SLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLA 548 (1041)
T ss_pred eeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHhh
Confidence 222 23378999999999999885 48888874433 334444443
No 102
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.6e-25 Score=249.14 Aligned_cols=321 Identities=18% Similarity=0.185 Sum_probs=226.7
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhc
Q 007481 16 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 95 (602)
Q Consensus 16 ~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~ 95 (602)
+|. .|++.|--.--.+ ...-|+.++||.|||++|.+|++...+... .|.||+|+.+||.|.++++..+..+
T Consensus 79 lgm-~~ydVQliGgl~L--~~G~IaEm~TGEGKTL~a~lp~~l~al~g~------~VhIvT~ndyLA~RD~e~m~~l~~~ 149 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVL--DSNRIAEMRTGEGKTLTATLPAYLNALTGK------GVHVITVNDYLARRDAENNRPLFEF 149 (908)
T ss_pred hCC-CcCchHHhcchHh--cCCccccccCCCCchHHHHHHHHHHHhcCC------CEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 353 3666665443333 345689999999999999999998776442 3999999999999999999999999
Q ss_pred CCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHH-HHHHHccCCCCC-----CCcceEEEeCccccccCC---------
Q 007481 96 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSVDL-----DDLAVLILDEADRLLELG--------- 160 (602)
Q Consensus 96 ~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L-~~~l~~~~~~~l-----~~l~llVlDEah~l~~~g--------- 160 (602)
.+++|.++.++.+... ..-...++|+++||+.| +|+|+....+.. ..+.++||||||.++-..
T Consensus 150 lGlsv~~i~~~~~~~~--r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg 227 (908)
T PRK13107 150 LGLTVGINVAGLGQQE--KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISG 227 (908)
T ss_pred cCCeEEEecCCCCHHH--HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecC
Confidence 9999999999887632 22234789999999999 999987644443 678899999999854211
Q ss_pred -------cHHHH----HHHHHh------------------------------------C---------------------
Q 007481 161 -------FSAEI----HELVRL------------------------------------C--------------------- 172 (602)
Q Consensus 161 -------f~~~i----~~i~~~------------------------------------~--------------------- 172 (602)
+...+ ..+... +
T Consensus 228 ~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~ 307 (908)
T PRK13107 228 AAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLL 307 (908)
T ss_pred CCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHH
Confidence 00000 011000 0
Q ss_pred -------------C---------------------------------------------C----------------Ccce
Q 007481 173 -------------P---------------------------------------------K----------------RRQT 178 (602)
Q Consensus 173 -------------~---------------------------------------------~----------------~~q~ 178 (602)
. + -..+
T Consensus 308 ~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL 387 (908)
T PRK13107 308 HHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKL 387 (908)
T ss_pred HHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHh
Confidence 0 0 0023
Q ss_pred eeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHH-HHHHHHhh-hcCCCeEEEEeCcHHHH
Q 007481 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE-AVLLSLCS-KTFTSKVIIFSGTKQAA 256 (602)
Q Consensus 179 il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~-~~l~~l~~-~~~~~kvIIF~~s~~~a 256 (602)
.+||+|......++...+-...+.+... +|....+.--.+.. ....+. +++..+.. ...+.++||||.|...+
T Consensus 388 ~GMTGTa~te~~Ef~~iY~l~Vv~IPTn----kp~~R~d~~d~iy~-t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~s 462 (908)
T PRK13107 388 AGMTGTADTEAFEFQHIYGLDTVVVPTN----RPMVRKDMADLVYL-TADEKYQAIIKDIKDCRERGQPVLVGTVSIEQS 462 (908)
T ss_pred hcccCCChHHHHHHHHHhCCCEEECCCC----CCccceeCCCcEEe-CHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHH
Confidence 4555555444444443332222222111 11111111101111 112222 23333322 23478999999999999
Q ss_pred HHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcC--------------------------
Q 007481 257 HRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII-------------------------- 310 (602)
Q Consensus 257 ~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip-------------------------- 310 (602)
+.++..|...|+++..||+.+++.++..+.+.|+.|. |+|||++++||+||.
T Consensus 463 e~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~ 540 (908)
T PRK13107 463 ELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKAD 540 (908)
T ss_pred HHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999 999999999999995
Q ss_pred -----------CccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHH
Q 007481 311 -----------GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 354 (602)
Q Consensus 311 -----------~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~ 354 (602)
+=-+||-...+.|...--|-.||+||.|.+|.+..|++-.|.-+
T Consensus 541 ~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L~ 595 (908)
T PRK13107 541 WQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLM 595 (908)
T ss_pred HHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHHH
Confidence 22478989999999999999999999999999999999887544
No 103
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=4.1e-26 Score=242.32 Aligned_cols=320 Identities=21% Similarity=0.262 Sum_probs=239.8
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCce
Q 007481 20 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 99 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~ 99 (602)
++-|+|..+|..+-.+.+|+++|.|.+|||.++-.++...+..+ -||+|-.|-.+|..|-|+.+..- |.+
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k------QRVIYTSPIKALSNQKYREl~~E--F~D-- 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREK------QRVIYTSPIKALSNQKYRELLEE--FKD-- 198 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhc------CeEEeeChhhhhcchhHHHHHHH--hcc--
Confidence 47899999999999999999999999999999888887776433 27999999999999999988763 333
Q ss_pred EEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCCCccee
Q 007481 100 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179 (602)
Q Consensus 100 v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~i 179 (602)
|++.+|+.+ +...+..+|+|.+.|..++.++ +--+..+.+||+||+|.|-+....-.+++-+-.+|...+.+
T Consensus 199 VGLMTGDVT-------InP~ASCLVMTTEILRsMLYRG-SEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~V 270 (1041)
T KOG0948|consen 199 VGLMTGDVT-------INPDASCLVMTTEILRSMLYRG-SEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFV 270 (1041)
T ss_pred cceeeccee-------eCCCCceeeeHHHHHHHHHhcc-chHhheeeeEEeeeehhccccccceeeeeeEEeccccceEE
Confidence 477888765 3567789999999999988875 45578899999999999988765555666666789999999
Q ss_pred eeeccCChhHH--HHHHHhcCCCeEEecCCCCCCCCCceeeeeeec------------hhhhhhHHHHHH----------
Q 007481 180 LFSATLTEDVD--ELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR------------RMREVNQEAVLL---------- 235 (602)
Q Consensus 180 l~SAT~~~~~~--~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~------------~~~~~~k~~~l~---------- 235 (602)
++|||+|+... +++...-.+|..+.. ...+|+.+.+.+.... .+++..-...+.
T Consensus 271 FLSATiPNA~qFAeWI~~ihkQPcHVVY--TdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~ 348 (1041)
T KOG0948|consen 271 FLSATIPNARQFAEWICHIHKQPCHVVY--TDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDG 348 (1041)
T ss_pred EEeccCCCHHHHHHHHHHHhcCCceEEe--ecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcc
Confidence 99999997643 344444455654433 4456777766543311 011111111111
Q ss_pred ---------------------------HHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcC---------------------
Q 007481 236 ---------------------------SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAA--------------------- 267 (602)
Q Consensus 236 ---------------------------~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g--------------------- 267 (602)
..+-.....+||||+-+++.|+.++.-+..+.
T Consensus 349 ~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~L 428 (1041)
T KOG0948|consen 349 KKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQL 428 (1041)
T ss_pred ccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhc
Confidence 11112223589999999999998865554322
Q ss_pred ------------------CceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEE----cCCCC---
Q 007481 268 ------------------LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN----YACPR--- 322 (602)
Q Consensus 268 ------------------~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~----~d~p~--- 322 (602)
-.+..+|||+-+.-.+-+.-.|..|-+++|+||..++.|||.|.-++|+- ||-..
T Consensus 429 seeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRw 508 (1041)
T KOG0948|consen 429 SEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRW 508 (1041)
T ss_pred ChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceee
Confidence 23678999999999999999999999999999999999999998887772 33221
Q ss_pred -ChhhHHHHhhhcccCCC--cceEEEEEecC-cHHHHHHHH
Q 007481 323 -DLTSYVHRVGRTARAGR--EGYAVTFVTDN-DRSLLKAIA 359 (602)
Q Consensus 323 -s~~~yiQriGRa~R~g~--~g~~i~l~~~~-d~~~l~~i~ 359 (602)
|.-.|+|+.|||||.|. .|.||+++++. +....+.+.
T Consensus 509 issGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~ 549 (1041)
T KOG0948|consen 509 ISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDML 549 (1041)
T ss_pred ecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHh
Confidence 67799999999999885 58899998865 555555554
No 104
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.95 E-value=1.1e-25 Score=240.15 Aligned_cols=316 Identities=20% Similarity=0.269 Sum_probs=222.4
Q ss_pred CCcHHHHHHHHHHhc----CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhc
Q 007481 20 KPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 95 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~----g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~ 95 (602)
.+++||.+.++++.+ |-++|+...+|.|||+.. |..+..+....+ .+ ...||+||...|.. |.+.|..|+.
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~-~~-GPfLVi~P~StL~N-W~~Ef~rf~P- 241 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKG-IP-GPFLVIAPKSTLDN-WMNEFKRFTP- 241 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcC-CC-CCeEEEeeHhhHHH-HHHHHHHhCC-
Confidence 689999999998875 779999999999999764 555554444222 22 34899999999855 7788887764
Q ss_pred CCceEEEEECCCCHHH---HHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhC
Q 007481 96 TDIRCCLVVGGLSTKM---QETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172 (602)
Q Consensus 96 ~~i~v~~~~g~~~~~~---~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~ 172 (602)
++++.+++|+..... +.....+..+|+|||++..+.--. .+.--.|.+|||||||++.+. ...+..+++.+
T Consensus 242 -~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~---~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~f 315 (971)
T KOG0385|consen 242 -SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS---FLKKFNWRYLVIDEAHRIKNE--KSKLSKILREF 315 (971)
T ss_pred -CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH---HHhcCCceEEEechhhhhcch--hhHHHHHHHHh
Confidence 788899999864322 122234578999999999875311 122335889999999999886 34455666665
Q ss_pred CCCcceeeeeccCC-hhHHHHH----------------------------------------------------------
Q 007481 173 PKRRQTMLFSATLT-EDVDELI---------------------------------------------------------- 193 (602)
Q Consensus 173 ~~~~q~il~SAT~~-~~~~~l~---------------------------------------------------------- 193 (602)
.... .+|+|+||- +++.++.
T Consensus 316 ~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLpp 394 (971)
T KOG0385|consen 316 KTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPP 394 (971)
T ss_pred cccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCC
Confidence 5433 467788873 2222221
Q ss_pred -----------------------------------------------HHhcCCCeEEecCCCCCCCCCceeeeeeechhh
Q 007481 194 -----------------------------------------------KLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR 226 (602)
Q Consensus 194 -----------------------------------------------~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~ 226 (602)
...|++|..+.-..+. .|-...++++ .
T Consensus 395 KkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg-~pyttdehLv-----~ 468 (971)
T KOG0385|consen 395 KKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPG-PPYTTDEHLV-----T 468 (971)
T ss_pred cceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCC-CCCCcchHHH-----h
Confidence 1111111111110000 0000000000 0
Q ss_pred hhhHHHHHHHHhh--hcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC---CceEEEEcC
Q 007481 227 EVNQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ---HVDFLIATD 301 (602)
Q Consensus 227 ~~~k~~~l~~l~~--~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g---~~~iLVaT~ 301 (602)
...+..+|..++. ...+++||||.....+.+.|.+++...++..+.|.|+++.++|...++.|... .+-+|++|.
T Consensus 469 nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTR 548 (971)
T KOG0385|consen 469 NSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTR 548 (971)
T ss_pred cCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecc
Confidence 1222334444443 34578999999999999999999999999999999999999999999999974 456789999
Q ss_pred ccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCc--ceEEEEEecCcHH
Q 007481 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE--GYAVTFVTDNDRS 353 (602)
Q Consensus 302 ~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~--g~~i~l~~~~d~~ 353 (602)
+++.|||+..+++||.||..|||..-+|.+.||+|.|+. -.||-|++.++.+
T Consensus 549 AGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 549 AGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred ccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 999999999999999999999999999999999999964 5667778887654
No 105
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.94 E-value=1.6e-24 Score=243.75 Aligned_cols=189 Identities=20% Similarity=0.291 Sum_probs=142.8
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCC-
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC- 320 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~- 320 (602)
.+.++||||+|...++.++..|...|+++..+||++++.+|..++..|+.|.+.|||||+++++|+|+|++++||++|.
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~e 524 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDAD 524 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCc
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred ----CCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcC-------cchhhhhhhhhhHHHHHHHHHHHHH
Q 007481 321 ----PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGS-------KLKSRIVAEQSITKWSKIIEQMEDQ 389 (602)
Q Consensus 321 ----p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~~~~ 389 (602)
|.+..+|+||+||+||. ..|.+++|++..+..+.+.+.+.... .....+++...+..|...++.+++.
T Consensus 525 ifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (652)
T PRK05298 525 KEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTIKKKIRDILDSVYKK 603 (652)
T ss_pred ccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHhhhhh
Confidence 78999999999999995 79999999998777777777554322 2233444555555555444333221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccc-cccHHHHHHHHHHhHHHHHc
Q 007481 390 VAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTW-FVTEKEKKLAVKADKASIEK 451 (602)
Q Consensus 390 ~~~~~~~e~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~ 451 (602)
.+ +.....+..+..+...|...+... |+ .++..++.+..|..
T Consensus 604 --~~--------------~~~~~~~~~~~~l~~~M~~aa~~l~fE----~Aa~~Rd~i~~l~~ 646 (652)
T PRK05298 604 --DK--------------LSKKELEKLIKELEKQMKEAAKNLEFE----EAARLRDEIKELKE 646 (652)
T ss_pred --cc--------------CCHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHH
Confidence 01 111223344444555555555444 54 37777777776653
No 106
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=2.2e-25 Score=209.79 Aligned_cols=165 Identities=37% Similarity=0.558 Sum_probs=142.3
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEE
Q 007481 22 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCC 101 (602)
Q Consensus 22 t~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~ 101 (602)
||+|.++++.+..|+++++.||||+|||+++++|++..+... + ..+++|++|+++|+.|+++.+..+....++++.
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~---~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-K---DARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-S---SSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-C---CceEEEEeecccccccccccccccccccccccc
Confidence 799999999999999999999999999999999999888765 2 227999999999999999999999888888999
Q ss_pred EEECCCCHH-HHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCC--Ccce
Q 007481 102 LVVGGLSTK-MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK--RRQT 178 (602)
Q Consensus 102 ~~~g~~~~~-~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~--~~q~ 178 (602)
.++|+.... .....+...++|+|+||++|.+.+..... .+..+++|||||+|.+..+.+...+..++..+.. ..|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~-~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~ 155 (169)
T PF00270_consen 77 LLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI-NISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQI 155 (169)
T ss_dssp EESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS-TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEE
T ss_pred cccccccccccccccccccccccccCcchhhcccccccc-ccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcE
Confidence 999998855 44455567799999999999999988443 6677999999999999998888888888887733 5899
Q ss_pred eeeeccCChhHHH
Q 007481 179 MLFSATLTEDVDE 191 (602)
Q Consensus 179 il~SAT~~~~~~~ 191 (602)
+++|||++..++.
T Consensus 156 i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 156 ILLSATLPSNVEK 168 (169)
T ss_dssp EEEESSSTHHHHH
T ss_pred EEEeeCCChhHhh
Confidence 9999999966554
No 107
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.92 E-value=5e-24 Score=233.50 Aligned_cols=341 Identities=21% Similarity=0.246 Sum_probs=239.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHH--HHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHH
Q 007481 5 LSRPLLRACEALGYSKPTPIQAACI--PLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 82 (602)
Q Consensus 5 L~~~ll~~l~~~g~~~pt~~Q~~~i--~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La 82 (602)
++....-.....|...++.||.+|+ |.++.++|.|..+||+.|||+++-+.++.+++...+ .++.+.|-...+
T Consensus 208 ~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr-----~~llilp~vsiv 282 (1008)
T KOG0950|consen 208 PTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR-----NVLLILPYVSIV 282 (1008)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh-----ceeEecceeehh
Confidence 3334444456779999999999997 788899999999999999999999998888876544 389999998888
Q ss_pred HHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHcc-CCCCCCCcceEEEeCccccccCCc
Q 007481 83 VQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS-MSVDLDDLAVLILDEADRLLELGF 161 (602)
Q Consensus 83 ~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~-~~~~l~~l~llVlDEah~l~~~gf 161 (602)
..-...+..+....|+.+...+|..+... ....-++.|||-++-...+... ..-.++.+.+|||||.|.+.+.+.
T Consensus 283 ~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~----~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~r 358 (1008)
T KOG0950|consen 283 QEKISALSPFSIDLGFPVEEYAGRFPPEK----RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGR 358 (1008)
T ss_pred HHHHhhhhhhccccCCcchhhcccCCCCC----cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeecccc
Confidence 77777888887778888877776654322 2345689999988754443321 123577789999999999999886
Q ss_pred HHHHHHHHHh-----CCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHH-----
Q 007481 162 SAEIHELVRL-----CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE----- 231 (602)
Q Consensus 162 ~~~i~~i~~~-----~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~----- 231 (602)
...++.++.. .....|+|+||||+++. ..+ ..++..-++ ....+|..+.+....-.......+.
T Consensus 359 g~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~-~lL-~~~L~A~~y----~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ 432 (1008)
T KOG0950|consen 359 GAILELLLAKILYENLETSVQIIGMSATIPNN-SLL-QDWLDAFVY----TTRFRPVPLKEYIKPGSLIYESSRNKVLRE 432 (1008)
T ss_pred chHHHHHHHHHHHhccccceeEeeeecccCCh-HHH-HHHhhhhhe----ecccCcccchhccCCCcccccchhhHHHHH
Confidence 6666666442 23346799999999854 222 222222111 1122232222211000000000011
Q ss_pred --------------HHHHHHhhhc--CCCeEEEEeCcHHHHHHHHHHHh-------------------------------
Q 007481 232 --------------AVLLSLCSKT--FTSKVIIFSGTKQAAHRLKILFG------------------------------- 264 (602)
Q Consensus 232 --------------~~l~~l~~~~--~~~kvIIF~~s~~~a~~l~~~L~------------------------------- 264 (602)
..+..+|.+. .+.++||||++++.|+.++..+.
T Consensus 433 ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ 512 (1008)
T KOG0950|consen 433 IANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGI 512 (1008)
T ss_pred hhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcc
Confidence 1222223221 23469999999999987753331
Q ss_pred -------hcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcC----CCCChhhHHHHhhh
Q 007481 265 -------LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA----CPRDLTSYVHRVGR 333 (602)
Q Consensus 265 -------~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d----~p~s~~~yiQriGR 333 (602)
...+.++++|.+++.++|..+...|+.|.+.|++||+.++.|+|+|...++|-.- .+.+...|.||+||
T Consensus 513 ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GR 592 (1008)
T KOG0950|consen 513 LDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGR 592 (1008)
T ss_pred cchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhh
Confidence 0124588999999999999999999999999999999999999999999888432 23378899999999
Q ss_pred cccCCC--cceEEEEEecCcHHHHHHHHH
Q 007481 334 TARAGR--EGYAVTFVTDNDRSLLKAIAK 360 (602)
Q Consensus 334 a~R~g~--~g~~i~l~~~~d~~~l~~i~~ 360 (602)
|||+|- -|.+|+++...+.+.+..+..
T Consensus 593 AGR~gidT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 593 AGRTGIDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred hhhcccccCcceEEEeeccchhHHHHHHh
Confidence 999874 599999999999877776654
No 108
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=2.6e-22 Score=215.65 Aligned_cols=328 Identities=19% Similarity=0.174 Sum_probs=215.9
Q ss_pred CCCcHHHHHHHHHHhc----CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 19 SKPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 19 ~~pt~~Q~~~i~~~l~----g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
..+.|||++++.++.. +...|+...+|.|||+. ++..|..+.....- ..++|||||.. +..||..+|..|.
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~k~--~~paLIVCP~T-ii~qW~~E~~~w~- 278 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSGKL--TKPALIVCPAT-IIHQWMKEFQTWW- 278 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhcccc--cCceEEEccHH-HHHHHHHHHHHhC-
Confidence 3568999999998874 67899999999999964 34444444444221 13599999986 5578888888864
Q ss_pred cCCceEEEEECCCCH--------HHHHH-----HHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCc
Q 007481 95 FTDIRCCLVVGGLST--------KMQET-----ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF 161 (602)
Q Consensus 95 ~~~i~v~~~~g~~~~--------~~~~~-----~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf 161 (602)
+.++|.+++|..+. ...+. .......|+|+|+..|.-. ...+.-..|+++|+||.|++-+..
T Consensus 279 -p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~---~d~l~~~~W~y~ILDEGH~IrNpn- 353 (923)
T KOG0387|consen 279 -PPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ---GDDLLGILWDYVILDEGHRIRNPN- 353 (923)
T ss_pred -cceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc---CcccccccccEEEecCcccccCCc-
Confidence 57788888876552 11111 1234457999998876432 122334568999999999988764
Q ss_pred HHHHHHHHHhCCCCcceeeeeccCC-hhHHHHHHHh-----------------cCCCeEEecCCCCC-------------
Q 007481 162 SAEIHELVRLCPKRRQTMLFSATLT-EDVDELIKLS-----------------LTKPLRLSADPSAK------------- 210 (602)
Q Consensus 162 ~~~i~~i~~~~~~~~q~il~SAT~~-~~~~~l~~~~-----------------l~~p~~~~~~~~~~------------- 210 (602)
..+..-+..++ ..+.|.+|+||- +++.++..++ +..|+...-+....
T Consensus 354 -s~islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~ 431 (923)
T KOG0387|consen 354 -SKISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVA 431 (923)
T ss_pred -cHHHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHH
Confidence 22222222222 334566777763 2233221111 01111110000000
Q ss_pred --------------------CCCCceeeeeee------------------------------------------------
Q 007481 211 --------------------RPSTLTEEVVRI------------------------------------------------ 222 (602)
Q Consensus 211 --------------------~~~~l~~~~~~~------------------------------------------------ 222 (602)
..+.-.+.++.|
T Consensus 432 Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~ 511 (923)
T KOG0387|consen 432 LRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDR 511 (923)
T ss_pred HHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccC
Confidence 000000001111
Q ss_pred ------------chhhhhhHHHHHHHHhh--hcCCCeEEEEeCcHHHHHHHHHHHh-hcCCceeeccCCCCHHHHHHHHH
Q 007481 223 ------------RRMREVNQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFG-LAALKAAELHGNLTQAQRLEALE 287 (602)
Q Consensus 223 ------------~~~~~~~k~~~l~~l~~--~~~~~kvIIF~~s~~~a~~l~~~L~-~~g~~~~~lhg~~~~~eR~~il~ 287 (602)
.......+..++..++. ...+.++|+|..++.+...|..+|. ..|++++.+.|.++...|..++.
T Consensus 512 ~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd 591 (923)
T KOG0387|consen 512 RDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVD 591 (923)
T ss_pred cccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHH
Confidence 01122334445554443 3346799999999999999999999 68999999999999999999999
Q ss_pred HHhcCCc--eEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCc--ceEEEEEecCcHHHHHHH
Q 007481 288 LFRKQHV--DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE--GYAVTFVTDNDRSLLKAI 358 (602)
Q Consensus 288 ~F~~g~~--~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~--g~~i~l~~~~d~~~l~~i 358 (602)
+|+++.. -+|++|.+++-|+|+.+++-||+||+.|||..-.|..-|+.|.|+. -.+|-|++..+.+...+-
T Consensus 592 ~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~ 666 (923)
T KOG0387|consen 592 RFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYH 666 (923)
T ss_pred hhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHH
Confidence 9998743 3689999999999999999999999999999999999999999965 456666887765544433
No 109
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.91 E-value=5.8e-22 Score=218.33 Aligned_cols=280 Identities=25% Similarity=0.305 Sum_probs=193.3
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhc
Q 007481 16 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 95 (602)
Q Consensus 16 ~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~ 95 (602)
.|| .|+..|.-....++.|+++-+.||||.|||.- .+.+-..+- ..+.+++||+||..|+.|+++.+..|+..
T Consensus 79 ~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTf-g~~~sl~~a-----~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~ 151 (1187)
T COG1110 79 TGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTF-GLLMSLYLA-----KKGKRVYIIVPTTTLVRQVYERLKKFAED 151 (1187)
T ss_pred hCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHH-HHHHHHHHH-----hcCCeEEEEecCHHHHHHHHHHHHHHHhh
Confidence 365 89999999999999999999999999999963 333222221 13457999999999999999999999876
Q ss_pred CC-ceEEE-EECCCCHHHHH----HHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccccc-----------
Q 007481 96 TD-IRCCL-VVGGLSTKMQE----TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE----------- 158 (602)
Q Consensus 96 ~~-i~v~~-~~g~~~~~~~~----~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~----------- 158 (602)
.+ ..+.. .++..+..... ..-.++.||+|+|.+.|...+..-. --++++|++|++|-++-
T Consensus 152 ~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~---~~kFdfifVDDVDA~LkaskNvDriL~L 228 (1187)
T COG1110 152 AGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELS---KLKFDFIFVDDVDAILKASKNVDRLLRL 228 (1187)
T ss_pred cCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhc---ccCCCEEEEccHHHHHhccccHHHHHHH
Confidence 65 44433 45555544432 3345679999999998887766521 13578999999997653
Q ss_pred CCcHHHH-----------------------HHHHHh--------CCCCcceeeeeccCChhHH--HHHHHhcCCCeEEec
Q 007481 159 LGFSAEI-----------------------HELVRL--------CPKRRQTMLFSATLTEDVD--ELIKLSLTKPLRLSA 205 (602)
Q Consensus 159 ~gf~~~i-----------------------~~i~~~--------~~~~~q~il~SAT~~~~~~--~l~~~~l~~p~~~~~ 205 (602)
.||..+. .++++. -.+.-++|..|||..+.-. .+....+. +.+
T Consensus 229 lGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg----Fev 304 (1187)
T COG1110 229 LGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG----FEV 304 (1187)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC----Ccc
Confidence 2333321 111111 1134578999999864422 22222222 222
Q ss_pred CCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhhcCCCeEEEEeCc---HHHHHHHHHHHhhcCCceeeccCCCCHHHH
Q 007481 206 DPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGT---KQAAHRLKILFGLAALKAAELHGNLTQAQR 282 (602)
Q Consensus 206 ~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~kvIIF~~s---~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR 282 (602)
........++.+.++.. .-...+..++.. .+...|||++. ++.++.++++|...|+++..+|+. .
T Consensus 305 G~~~~~LRNIvD~y~~~------~~~e~~~elvk~-lG~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~ 372 (1187)
T COG1110 305 GSGGEGLRNIVDIYVES------ESLEKVVELVKK-LGDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----K 372 (1187)
T ss_pred CccchhhhheeeeeccC------ccHHHHHHHHHH-hCCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----c
Confidence 22222333444444332 122233334443 35688999999 999999999999999999999983 2
Q ss_pred HHHHHHHhcCCceEEEEc----CccccccCcCC-ccEEEEcCCC
Q 007481 283 LEALELFRKQHVDFLIAT----DVAARGLDIIG-VQTVINYACP 321 (602)
Q Consensus 283 ~~il~~F~~g~~~iLVaT----~~~~~GlDip~-v~~VI~~d~p 321 (602)
.+.++.|..|++++||++ .++-||||+|. +..+|.|+.|
T Consensus 373 ~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 373 EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred hhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 678999999999999885 67899999997 7888888877
No 110
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.90 E-value=3.1e-22 Score=228.31 Aligned_cols=328 Identities=20% Similarity=0.202 Sum_probs=215.0
Q ss_pred CCcHHHHHHHHHHhcC---C-CEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhc
Q 007481 20 KPTPIQAACIPLALTG---R-DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 95 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~g---~-dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~ 95 (602)
.+++.|..++..++.. . .+++.||||+|||.+.+++++..+... . ....+++++.|++.+..++++.+..+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-~-~~~~r~i~vlP~~t~ie~~~~r~~~~~~~ 272 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-I-KLKSRVIYVLPFRTIIEDMYRRAKEIFGL 272 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-c-cccceEEEEccHHHHHHHHHHHHHhhhcc
Confidence 3489999999988863 4 788999999999999988888776653 1 24568999999999999999999987766
Q ss_pred CCceEEEEECCCCHHHHHHH--------------HcCCCcEEEECcHHHHHHHHccCCCC-C--CCcceEEEeCcccccc
Q 007481 96 TDIRCCLVVGGLSTKMQETA--------------LRSMPDIVVATPGRMIDHLRNSMSVD-L--DDLAVLILDEADRLLE 158 (602)
Q Consensus 96 ~~i~v~~~~g~~~~~~~~~~--------------l~~~~~IvI~Tp~~L~~~l~~~~~~~-l--~~l~llVlDEah~l~~ 158 (602)
.++.....+|.......... ......++++||............+. + -..+++||||+|.+.+
T Consensus 273 ~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~ 352 (733)
T COG1203 273 FSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYAD 352 (733)
T ss_pred cccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcc
Confidence 54433323333222111100 00112334444444433222111111 1 1236899999999887
Q ss_pred CCcHHHHHHHHH-hCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCC---CCCCceee-eeeechhhhhhHHHH
Q 007481 159 LGFSAEIHELVR-LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK---RPSTLTEE-VVRIRRMREVNQEAV 233 (602)
Q Consensus 159 ~gf~~~i~~i~~-~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~---~~~~l~~~-~~~~~~~~~~~k~~~ 233 (602)
......+..++. .......+|++|||+|+.+.+.+...+.....+....... ....+... ...+. .......
T Consensus 353 ~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~---~~~~~~~ 429 (733)
T COG1203 353 ETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVE---DGPQEEL 429 (733)
T ss_pred cchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhh---hhhhHhh
Confidence 732222323322 2334677999999999999988877766655444321100 00011100 00000 0000011
Q ss_pred HHHH-hhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHh----cCCceEEEEcCccccccC
Q 007481 234 LLSL-CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR----KQHVDFLIATDVAARGLD 308 (602)
Q Consensus 234 l~~l-~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~----~g~~~iLVaT~~~~~GlD 308 (602)
.... .....+.+++|.|||...|..++..|+..+.++..+||.+...+|.+.++.+. .+...|+|||++.+.|+|
T Consensus 430 ~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvD 509 (733)
T COG1203 430 IELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVD 509 (733)
T ss_pred hhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEec
Confidence 1111 12334679999999999999999999998888999999999999998888655 468899999999999999
Q ss_pred cCCccEEEEcCCCCChhhHHHHhhhcccCC--CcceEEEEEecCcHHHH
Q 007481 309 IIGVQTVINYACPRDLTSYVHRVGRTARAG--REGYAVTFVTDNDRSLL 355 (602)
Q Consensus 309 ip~v~~VI~~d~p~s~~~yiQriGRa~R~g--~~g~~i~l~~~~d~~~l 355 (602)
+. .+++|-=-. ...+.+||.||++|.| ..|.++++.........
T Consensus 510 id-fd~mITe~a--PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~ 555 (733)
T COG1203 510 ID-FDVLITELA--PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYL 555 (733)
T ss_pred cc-cCeeeecCC--CHHHHHHHHHHHhhcccccCCceeEeecccCCCch
Confidence 95 777764333 5789999999999999 67888888766543333
No 111
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.89 E-value=2.2e-22 Score=224.42 Aligned_cols=329 Identities=19% Similarity=0.233 Sum_probs=221.5
Q ss_pred CCCcHHHHHHHHHHhc----CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 19 SKPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 19 ~~pt~~Q~~~i~~~l~----g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
.+++.||-+.+++++. +.++|+...+|.|||+.- +..|..+..... .....|||+|...+.. |...|..|+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqt-i~fl~~l~~~~~--~~gpflvvvplst~~~-W~~ef~~w~- 443 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQT-ITFLSYLFHSLQ--IHGPFLVVVPLSTITA-WEREFETWT- 443 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHH-HHHHHHHHHhhh--ccCCeEEEeehhhhHH-HHHHHHHHh-
Confidence 6899999999999874 789999999999999542 333333332221 1224899999988765 677777665
Q ss_pred cCCceEEEEECCCCHHHHHHHH----cC-----CCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHH
Q 007481 95 FTDIRCCLVVGGLSTKMQETAL----RS-----MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI 165 (602)
Q Consensus 95 ~~~i~v~~~~g~~~~~~~~~~l----~~-----~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i 165 (602)
+.++.+.+|........... .. .++++|||++.++.--. .+.--.|.+++|||||++.+.. ..+
T Consensus 444 --~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~---~L~~i~w~~~~vDeahrLkN~~--~~l 516 (1373)
T KOG0384|consen 444 --DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA---ELSKIPWRYLLVDEAHRLKNDE--SKL 516 (1373)
T ss_pred --hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh---hhccCCcceeeecHHhhcCchH--HHH
Confidence 78888889887654433221 22 37899999998865221 1222347899999999998753 223
Q ss_pred HHHHHhCCCCcceeeeeccCC-hhHHHHHHHh-cCCCeEEecC---------------------------------CCCC
Q 007481 166 HELVRLCPKRRQTMLFSATLT-EDVDELIKLS-LTKPLRLSAD---------------------------------PSAK 210 (602)
Q Consensus 166 ~~i~~~~~~~~q~il~SAT~~-~~~~~l~~~~-l~~p~~~~~~---------------------------------~~~~ 210 (602)
...+..+.. ...+++|+||- +++.++..+. +..|..+... ....
T Consensus 517 ~~~l~~f~~-~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdveks 595 (1373)
T KOG0384|consen 517 YESLNQFKM-NHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKS 595 (1373)
T ss_pred HHHHHHhcc-cceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccC
Confidence 333333332 23478888875 3444443221 1122111000 0000
Q ss_pred CCCCceeeeeeec-------------------------------------------------h--------hhhhhHHHH
Q 007481 211 RPSTLTEEVVRIR-------------------------------------------------R--------MREVNQEAV 233 (602)
Q Consensus 211 ~~~~l~~~~~~~~-------------------------------------------------~--------~~~~~k~~~ 233 (602)
.| .-.+.+++|. + .........
T Consensus 596 lp-~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~ 674 (1373)
T KOG0384|consen 596 LP-PKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEA 674 (1373)
T ss_pred CC-CCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHH
Confidence 00 0011111110 0 000000112
Q ss_pred HHHH-------------hh--hcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhc---CCce
Q 007481 234 LLSL-------------CS--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK---QHVD 295 (602)
Q Consensus 234 l~~l-------------~~--~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~---g~~~ 295 (602)
|..+ +. ...+++||||.....+.+.|++||...+++.-.|.|.+..+.|..+|..|+. ..+-
T Consensus 675 L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFv 754 (1373)
T KOG0384|consen 675 LQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFV 754 (1373)
T ss_pred HHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceE
Confidence 2111 11 3446899999999999999999999999999999999999999999999996 4788
Q ss_pred EEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCc--ceEEEEEecCc--HHHHHHHHHH
Q 007481 296 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE--GYAVTFVTDND--RSLLKAIAKR 361 (602)
Q Consensus 296 iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~--g~~i~l~~~~d--~~~l~~i~~~ 361 (602)
+|+||.+++.|||+..+++||+||..|||..-+|..-||+|.|+. -.+|-|++.++ ++++......
T Consensus 755 FLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~K 824 (1373)
T KOG0384|consen 755 FLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLK 824 (1373)
T ss_pred EEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999965 56777788774 4566655544
No 112
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=8.6e-21 Score=212.32 Aligned_cols=124 Identities=19% Similarity=0.229 Sum_probs=109.6
Q ss_pred hHHHHHHHHhhh--cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccc
Q 007481 229 NQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 306 (602)
Q Consensus 229 ~k~~~l~~l~~~--~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~G 306 (602)
.+...+...+.. ..+.++||||+|+..++.|+..|...|+++..||+ .+.+|+..+..|..+...|+|||++++||
T Consensus 582 eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRG 659 (1025)
T PRK12900 582 EKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRG 659 (1025)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCC
Confidence 344555555532 35789999999999999999999999999999997 78899999999999999999999999999
Q ss_pred cCcC---Ccc-----EEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHH
Q 007481 307 LDII---GVQ-----TVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 354 (602)
Q Consensus 307 lDip---~v~-----~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~ 354 (602)
+||+ +|. +||+++.|.|...|.|++|||||+|.+|.+++|++..|.-+
T Consensus 660 tDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lm 715 (1025)
T PRK12900 660 TDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELM 715 (1025)
T ss_pred CCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHH
Confidence 9998 554 45999999999999999999999999999999999887654
No 113
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.88 E-value=2.1e-20 Score=217.51 Aligned_cols=331 Identities=18% Similarity=0.225 Sum_probs=206.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHH----HHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHH
Q 007481 5 LSRPLLRACEALGYSKPTPIQAACIP----LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 80 (602)
Q Consensus 5 L~~~ll~~l~~~g~~~pt~~Q~~~i~----~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~ 80 (602)
+++.+.+.+...||. ++|.|.+.+. .+..++++++.||||+|||++|++|++.... . +.+++|.+||++
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~-----~~~vvi~t~t~~ 303 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-T-----EKPVVISTNTKV 303 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-C-----CCeEEEEeCcHH
Confidence 345677778888998 8999998665 4556899999999999999999999987654 1 237999999999
Q ss_pred HHHHHHH-HHHHHhhcCC--ceEEEEECCCCHH---------------HH------------------------------
Q 007481 81 LAVQVHS-MIEKIAQFTD--IRCCLVVGGLSTK---------------MQ------------------------------ 112 (602)
Q Consensus 81 La~Q~~~-~~~~l~~~~~--i~v~~~~g~~~~~---------------~~------------------------------ 112 (602)
|..|+.. .+..+.+..+ ++++++.|+.++- ..
T Consensus 304 Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~ 383 (850)
T TIGR01407 304 LQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNK 383 (850)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcch
Confidence 9999865 5766666544 7778777764220 00
Q ss_pred --HHH------------------------HcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC------
Q 007481 113 --ETA------------------------LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG------ 160 (602)
Q Consensus 113 --~~~------------------------l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g------ 160 (602)
|.. ....++|||+....|+..+..... -+....++||||||++.+..
T Consensus 384 ~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~-ilp~~~~lIiDEAH~L~d~a~~~~~~ 462 (850)
T TIGR01407 384 MFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPE-LFPSFRDLIIDEAHHLPDIAENQLQE 462 (850)
T ss_pred hhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccc-cCCCCCEEEEECcchHHHHHHHHhcc
Confidence 000 012368999999988887754322 24556799999999965310
Q ss_pred -c-----HHH-------------------------------------------------------------HHH---HHH
Q 007481 161 -F-----SAE-------------------------------------------------------------IHE---LVR 170 (602)
Q Consensus 161 -f-----~~~-------------------------------------------------------------i~~---i~~ 170 (602)
+ ... ... .+.
T Consensus 463 ~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~ 542 (850)
T TIGR01407 463 ELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDL 542 (850)
T ss_pred eeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 0 000 000 000
Q ss_pred h------------------------------------------------CCCCcceeeeeccCCh--hHHHHH-HHhcCC
Q 007481 171 L------------------------------------------------CPKRRQTMLFSATLTE--DVDELI-KLSLTK 199 (602)
Q Consensus 171 ~------------------------------------------------~~~~~q~il~SAT~~~--~~~~l~-~~~l~~ 199 (602)
. .+....+|++|||++. ....+. .+++..
T Consensus 543 ~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~ 622 (850)
T TIGR01407 543 ALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTD 622 (850)
T ss_pred HHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCc
Confidence 0 0012357899999973 233332 233332
Q ss_pred CeEEecCCCCCCCCCc-eeeeeee----chh----hhhh---HHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhh--
Q 007481 200 PLRLSADPSAKRPSTL-TEEVVRI----RRM----REVN---QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL-- 265 (602)
Q Consensus 200 p~~~~~~~~~~~~~~l-~~~~~~~----~~~----~~~~---k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~-- 265 (602)
....... ..|-.. .+..+.+ ... .+.. -...+..++. ..++++||||+|...++.++..|..
T Consensus 623 ~~~~~~~---~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~-~~~g~~LVlftS~~~l~~v~~~L~~~~ 698 (850)
T TIGR01407 623 VHFNTIE---PTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITA-ITSPKILVLFTSYEMLHMVYDMLNELP 698 (850)
T ss_pred cccceec---CCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH-hcCCCEEEEeCCHHHHHHHHHHHhhhc
Confidence 2211111 011110 1111111 100 0111 1112223332 3457999999999999999999875
Q ss_pred --cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCcc--EEEEcCCCCC------------------
Q 007481 266 --AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQ--TVINYACPRD------------------ 323 (602)
Q Consensus 266 --~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~--~VI~~d~p~s------------------ 323 (602)
.++. .+..+.. .+|..+++.|+.|+..||++|+.+++|+|+|+.. +||+..+|..
T Consensus 699 ~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g 775 (850)
T TIGR01407 699 EFEGYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEG 775 (850)
T ss_pred cccCce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhc
Confidence 2333 3333333 5789999999999999999999999999999855 5777776641
Q ss_pred ------------hhhHHHHhhhcccCCCcceEEEEEecC
Q 007481 324 ------------LTSYVHRVGRTARAGREGYAVTFVTDN 350 (602)
Q Consensus 324 ------------~~~yiQriGRa~R~g~~g~~i~l~~~~ 350 (602)
...+.|.+||.-|...+.-++++++..
T Consensus 776 ~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 776 KNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred CCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 133459999999966554455555544
No 114
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.88 E-value=4.4e-21 Score=215.69 Aligned_cols=307 Identities=19% Similarity=0.215 Sum_probs=209.1
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHH--HHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHH-hhcCCce
Q 007481 23 PIQAACIPLALTGRDICGSAITGSGKTAAFALPTL--ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI-AQFTDIR 99 (602)
Q Consensus 23 ~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il--~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l-~~~~~i~ 99 (602)
....+.+.++.++.-+||+|+||||||+. +|.+ +... ..+..+.++-|.|.-|.-+++.+..- ....|-.
T Consensus 53 ~~~~~i~~ai~~~~vvii~getGsGKTTq--lP~~lle~g~-----~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~ 125 (845)
T COG1643 53 AVRDEILKAIEQNQVVIIVGETGSGKTTQ--LPQFLLEEGL-----GIAGKIGCTQPRRLAARSVAERVAEELGEKLGET 125 (845)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCChHHH--HHHHHHhhhc-----ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCce
Confidence 34445566666778888999999999984 5543 2221 23457899999998777776665443 2223333
Q ss_pred EEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccc-cccCCcHH-HHHHHHHhCCCCcc
Q 007481 100 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR-LLELGFSA-EIHELVRLCPKRRQ 177 (602)
Q Consensus 100 v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~-l~~~gf~~-~i~~i~~~~~~~~q 177 (602)
|+..+-. +........|-++|.|.|+..+.+ +..|+.+++|||||||+ .++..|.- .+..++...+....
T Consensus 126 VGY~iRf------e~~~s~~Trik~mTdGiLlrei~~--D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLK 197 (845)
T COG1643 126 VGYSIRF------ESKVSPRTRIKVMTDGILLREIQN--DPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLK 197 (845)
T ss_pred eeEEEEe------eccCCCCceeEEeccHHHHHHHhh--CcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCce
Confidence 4333321 112245678999999999999987 45689999999999995 44443433 33445666676789
Q ss_pred eeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhh--hhhHHHHHHHHhhhcCCCeEEEEeCcHHH
Q 007481 178 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR--EVNQEAVLLSLCSKTFTSKVIIFSGTKQA 255 (602)
Q Consensus 178 ~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~k~~~l~~l~~~~~~~kvIIF~~s~~~ 255 (602)
+|.||||+..+ .+...+-+.|+... ...... +.-.|....... -.........+......+.+|||.+...+
T Consensus 198 iIimSATld~~--rfs~~f~~apvi~i-~GR~fP---Vei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~E 271 (845)
T COG1643 198 LIIMSATLDAE--RFSAYFGNAPVIEI-EGRTYP---VEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQRE 271 (845)
T ss_pred EEEEecccCHH--HHHHHcCCCCEEEe-cCCccc---eEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHH
Confidence 99999999744 44444444555332 221111 111110100000 01111111222234457899999999999
Q ss_pred HHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCC-----------
Q 007481 256 AHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC----------- 320 (602)
Q Consensus 256 a~~l~~~L~~----~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~----------- 320 (602)
.+.+...|.. ..+.+..|||.++..++..+++--..|.-+|++||++++.+|-||+|.+||.-+.
T Consensus 272 I~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g 351 (845)
T COG1643 272 IERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTG 351 (845)
T ss_pred HHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccC
Confidence 9999999987 3477889999999999999888777776779999999999999999999996332
Q ss_pred -------CCChhhHHHHhhhcccCCCcceEEEEEecCc
Q 007481 321 -------PRDLTSYVHRVGRTARAGREGYAVTFVTDND 351 (602)
Q Consensus 321 -------p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d 351 (602)
|-|-.+..||.|||||- .+|.||-++++++
T Consensus 352 ~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~ 388 (845)
T COG1643 352 LTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEED 388 (845)
T ss_pred ceeeeEEEechhhhhhhccccccC-CCceEEEecCHHH
Confidence 23778889999999995 5999999999754
No 115
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.87 E-value=2.9e-20 Score=210.08 Aligned_cols=303 Identities=18% Similarity=0.175 Sum_probs=178.6
Q ss_pred CCcHHHHHHHHHHhc----------CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHH
Q 007481 20 KPTPIQAACIPLALT----------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 89 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~----------g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~ 89 (602)
.|+++|..+|..++. .+..+++++||||||++.+ .+...+... ...++||||+|+.+|..|+.+.|
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~-~la~~l~~~---~~~~~vl~lvdR~~L~~Q~~~~f 313 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTML-FAARKALEL---LKNPKVFFVVDRRELDYQLMKEF 313 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHH-HHHHHHHhh---cCCCeEEEEECcHHHHHHHHHHH
Confidence 379999999987643 2579999999999998753 333444322 23568999999999999999999
Q ss_pred HHHhhcCCceEEEEECCCCHHHHHHHHc-CCCcEEEECcHHHHHHHHcc-CCCCCCCc-ceEEEeCccccccCCcHHHHH
Q 007481 90 EKIAQFTDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNS-MSVDLDDL-AVLILDEADRLLELGFSAEIH 166 (602)
Q Consensus 90 ~~l~~~~~i~v~~~~g~~~~~~~~~~l~-~~~~IvI~Tp~~L~~~l~~~-~~~~l~~l-~llVlDEah~l~~~gf~~~i~ 166 (602)
..+.... ..+..+.......+. ....|+|+|.+.|...+... ..+..... -+||+||||+.....+...+
T Consensus 314 ~~~~~~~------~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~l- 386 (667)
T TIGR00348 314 QSLQKDC------AERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKNL- 386 (667)
T ss_pred HhhCCCC------CcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHHH-
Confidence 9874311 011112221222232 34689999999998654331 11222112 28999999997644333322
Q ss_pred HHHHhCCCCcceeeeeccCChhHHH---------------------HHHHhcCCCeEEecCCCCCC--CCCce----eee
Q 007481 167 ELVRLCPKRRQTMLFSATLTEDVDE---------------------LIKLSLTKPLRLSADPSAKR--PSTLT----EEV 219 (602)
Q Consensus 167 ~i~~~~~~~~q~il~SAT~~~~~~~---------------------l~~~~l~~p~~~~~~~~~~~--~~~l~----~~~ 219 (602)
...+| ....++|||||-..... .+...+.-|+.+........ ...+. ..+
T Consensus 387 --~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~ 463 (667)
T TIGR00348 387 --KKALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIF 463 (667)
T ss_pred --HhhCC-CCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHH
Confidence 23444 46799999999532111 11111111221111000000 00000 000
Q ss_pred eeech-hhhhh-------------------H-HH----HHHHHhh--hcCCCeEEEEeCcHHHHHHHHHHHhhc-----C
Q 007481 220 VRIRR-MREVN-------------------Q-EA----VLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLA-----A 267 (602)
Q Consensus 220 ~~~~~-~~~~~-------------------k-~~----~l~~l~~--~~~~~kvIIF~~s~~~a~~l~~~L~~~-----g 267 (602)
..... ..+.. . .. ++..... ...+++.+|||.++..|..+...|... +
T Consensus 464 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~ 543 (667)
T TIGR00348 464 ELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFE 543 (667)
T ss_pred HhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccC
Confidence 00000 00000 0 00 0011111 112479999999999999999887654 2
Q ss_pred CceeeccCCCCHH---------------------HHHHHHHHHhc-CCceEEEEcCccccccCcCCccEEEEcCCCCChh
Q 007481 268 LKAAELHGNLTQA---------------------QRLEALELFRK-QHVDFLIATDVAARGLDIIGVQTVINYACPRDLT 325 (602)
Q Consensus 268 ~~~~~lhg~~~~~---------------------eR~~il~~F~~-g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~ 325 (602)
..+..++++.+.. ....++++|++ +.++|||+++++.+|+|.|.+++++..-+.. ..
T Consensus 544 ~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk-~h 622 (667)
T TIGR00348 544 ASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLK-YH 622 (667)
T ss_pred CeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccc-cc
Confidence 4455666543322 22478889986 6889999999999999999999998665544 45
Q ss_pred hHHHHhhhcccC
Q 007481 326 SYVHRVGRTARA 337 (602)
Q Consensus 326 ~yiQriGRa~R~ 337 (602)
.++|++||+-|.
T Consensus 623 ~LlQai~R~nR~ 634 (667)
T TIGR00348 623 GLLQAIARTNRI 634 (667)
T ss_pred HHHHHHHHhccc
Confidence 689999999993
No 116
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.87 E-value=2.5e-20 Score=206.74 Aligned_cols=340 Identities=22% Similarity=0.277 Sum_probs=221.1
Q ss_pred CCCCHHHHHHHHHCCC----------------------CCCcHHHHHHHHHHhcC----CCEEEEcCCCchHHHHHHHHH
Q 007481 3 LNLSRPLLRACEALGY----------------------SKPTPIQAACIPLALTG----RDICGSAITGSGKTAAFALPT 56 (602)
Q Consensus 3 l~L~~~ll~~l~~~g~----------------------~~pt~~Q~~~i~~~l~g----~dvii~a~TGSGKT~a~~l~i 56 (602)
++.+...+++|...|+ ..+++-|+.++..+... ...++.+.||||||.+| +.+
T Consensus 159 ~~~s~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvY-l~~ 237 (730)
T COG1198 159 AGVSLSVLKGLEKKGLIEIIELEPPLVVAPPDPSLSEWLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVY-LEA 237 (730)
T ss_pred cchhHHHHHHHHhcCceeeecccCCCcccccccccccccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHH-HHH
Confidence 3455666666666554 36688999999998765 67899999999999997 566
Q ss_pred HHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHH---HHHH-cCCCcEEEECcHHHHH
Q 007481 57 LERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ---ETAL-RSMPDIVVATPGRMID 132 (602)
Q Consensus 57 l~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~---~~~l-~~~~~IvI~Tp~~L~~ 132 (602)
++..+.. |.++|||+|-..|..|+.+.|+.. ++.++.+++++.+..+. |... .+...|||+|
T Consensus 238 i~~~L~~-----GkqvLvLVPEI~Ltpq~~~rf~~r---Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt------ 303 (730)
T COG1198 238 IAKVLAQ-----GKQVLVLVPEIALTPQLLARFKAR---FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGT------ 303 (730)
T ss_pred HHHHHHc-----CCEEEEEeccccchHHHHHHHHHH---hCCChhhhcccCChHHHHHHHHHHhcCCceEEEEe------
Confidence 6666554 346999999999999998888865 36888999999886543 3333 4778999999
Q ss_pred HHHccCCCCCCCcceEEEeCccccc---cC--CcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCC
Q 007481 133 HLRNSMSVDLDDLAVLILDEADRLL---EL--GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADP 207 (602)
Q Consensus 133 ~l~~~~~~~l~~l~llVlDEah~l~---~~--gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~ 207 (602)
++.....+.++.+|||||=|.-. +. .+...--.+++.-..++.+|+-||||+-+....+.......+.+ ..
T Consensus 304 --RSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSATPSLES~~~~~~g~y~~~~L--~~ 379 (730)
T COG1198 304 --RSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPSLESYANAESGKYKLLRL--TN 379 (730)
T ss_pred --chhhcCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCCHHHHHhhhcCceEEEEc--cc
Confidence 23334578899999999999633 11 13333334444445577899999999755443332221111111 11
Q ss_pred CCCCCCCceeeeeeechhhhhhH----HHHHHHHhh-hcCCCeEEEEeCcHHHH--------------------------
Q 007481 208 SAKRPSTLTEEVVRIRRMREVNQ----EAVLLSLCS-KTFTSKVIIFSGTKQAA-------------------------- 256 (602)
Q Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~k----~~~l~~l~~-~~~~~kvIIF~~s~~~a-------------------------- 256 (602)
...........++..+....... ...+..+-. -..+.++|||.|.+-.+
T Consensus 380 R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~ 459 (730)
T COG1198 380 RAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKA 459 (730)
T ss_pred cccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecC
Confidence 11111111112222221111110 111221111 12244555555433322
Q ss_pred ----------------------------------HHHHHHHhh--cCCceeeccCCCCHHH--HHHHHHHHhcCCceEEE
Q 007481 257 ----------------------------------HRLKILFGL--AALKAAELHGNLTQAQ--RLEALELFRKQHVDFLI 298 (602)
Q Consensus 257 ----------------------------------~~l~~~L~~--~g~~~~~lhg~~~~~e--R~~il~~F~~g~~~iLV 298 (602)
+++.+.|.. .+..+..+.++.+... -..++..|.+|+.+|||
T Consensus 460 ~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILi 539 (730)
T COG1198 460 TGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILI 539 (730)
T ss_pred CCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeee
Confidence 122333322 2566777888766644 46789999999999999
Q ss_pred EcCccccccCcCCccEEEEcCCCC------------ChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHH
Q 007481 299 ATDVAARGLDIIGVQTVINYACPR------------DLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361 (602)
Q Consensus 299 aT~~~~~GlDip~v~~VI~~d~p~------------s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~ 361 (602)
+|++++.|.|+|++++|...|.+. ....+.|-.||+||++.+|.+++-....|...++.+...
T Consensus 540 GTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~ 614 (730)
T COG1198 540 GTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKRG 614 (730)
T ss_pred cchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHhc
Confidence 999999999999999988766553 356678999999999999999999888887777766543
No 117
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.86 E-value=5.3e-20 Score=196.18 Aligned_cols=304 Identities=16% Similarity=0.191 Sum_probs=200.7
Q ss_pred HHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHH-HhhcCCceEEEEEC
Q 007481 27 ACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK-IAQFTDIRCCLVVG 105 (602)
Q Consensus 27 ~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~-l~~~~~i~v~~~~g 105 (602)
+.+..+-.++-+||.|+||||||+ ++|-+ +.+.......++.+.-|.|.-|.-++..+.. +....|-.|+..+-
T Consensus 58 ~il~~ve~nqvlIviGeTGsGKST--QipQy---L~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IR 132 (674)
T KOG0922|consen 58 QILYAVEDNQVLIVIGETGSGKST--QIPQY---LAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIR 132 (674)
T ss_pred HHHHHHHHCCEEEEEcCCCCCccc--cHhHH---HHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEE
Confidence 445555567888899999999997 46643 2222222233489999999988877665543 22223433433322
Q ss_pred CCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccc-cccCCcH-HHHHHHHHhCCCCcceeeeec
Q 007481 106 GLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR-LLELGFS-AEIHELVRLCPKRRQTMLFSA 183 (602)
Q Consensus 106 ~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~-l~~~gf~-~~i~~i~~~~~~~~q~il~SA 183 (602)
- +........|.+.|.|.|+..+.. +..|+.+++|||||||. -+..... -.+..++. -++...+|.+||
T Consensus 133 F------ed~ts~~TrikymTDG~LLRE~l~--Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~-~R~~LklIimSA 203 (674)
T KOG0922|consen 133 F------EDSTSKDTRIKYMTDGMLLREILK--DPLLSKYSVIILDEAHERSLHTDILLGLLKKILK-KRPDLKLIIMSA 203 (674)
T ss_pred e------cccCCCceeEEEecchHHHHHHhc--CCccccccEEEEechhhhhhHHHHHHHHHHHHHh-cCCCceEEEEee
Confidence 1 111234568999999999998886 46789999999999995 2222111 12222322 234568999999
Q ss_pred cCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhh--HHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHH
Q 007481 184 TLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN--QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKI 261 (602)
Q Consensus 184 T~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~ 261 (602)
|+..+ .+...+.+.|+.... ... -.+...+.. .+..... .......+......+-+|||....++.+.+.+
T Consensus 204 Tlda~--kfS~yF~~a~i~~i~-GR~---fPVei~y~~-~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~ 276 (674)
T KOG0922|consen 204 TLDAE--KFSEYFNNAPILTIP-GRT---FPVEILYLK-EPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACE 276 (674)
T ss_pred eecHH--HHHHHhcCCceEeec-CCC---CceeEEecc-CCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHH
Confidence 99733 333444443543322 111 111111111 1111111 11223334445667899999999999999988
Q ss_pred HHhhc----CC----ceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEE--------cCC-----
Q 007481 262 LFGLA----AL----KAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN--------YAC----- 320 (602)
Q Consensus 262 ~L~~~----g~----~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~--------~d~----- 320 (602)
.|.+. +- -+..+||.++.+++..+...--.|.-+|+++|++++..|-|+++..||. |++
T Consensus 277 ~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~ 356 (674)
T KOG0922|consen 277 LLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLD 356 (674)
T ss_pred HHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCcc
Confidence 88764 11 2457999999999999988888899999999999999999999999995 332
Q ss_pred -----CCChhhHHHHhhhcccCCCcceEEEEEecCcH
Q 007481 321 -----PRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 352 (602)
Q Consensus 321 -----p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~ 352 (602)
|-|-.+-.||.|||||. .+|.|+-|+++++.
T Consensus 357 ~L~v~~ISkasA~QRaGRAGRt-~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 357 SLIVVPISKASANQRAGRAGRT-GPGKCYRLYTESAY 392 (674)
T ss_pred ceeEEechHHHHhhhcccCCCC-CCceEEEeeeHHHH
Confidence 44788889999999995 59999999998764
No 118
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=2.8e-18 Score=187.46 Aligned_cols=322 Identities=21% Similarity=0.210 Sum_probs=218.4
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 15 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 15 ~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
.+|+ .|++.|--..-.++.|+ |+.+.||+|||+++.+|++...+. +..|-|++|+..||.|-++++..+..
T Consensus 74 ~lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~------G~~VhvvT~NdyLA~RDae~m~~ly~ 144 (764)
T PRK12326 74 TLGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ------GRRVHVITVNDYLARRDAEWMGPLYE 144 (764)
T ss_pred HcCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc------CCCeEEEcCCHHHHHHHHHHHHHHHH
Confidence 4464 58999999988888774 789999999999999998877654 33589999999999999999999999
Q ss_pred cCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHH-HHHHHccCC-----CCCCCcceEEEeCccccccCC--------
Q 007481 95 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMS-----VDLDDLAVLILDEADRLLELG-------- 160 (602)
Q Consensus 95 ~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L-~~~l~~~~~-----~~l~~l~llVlDEah~l~~~g-------- 160 (602)
+.+++|+++.++.+.......+ .+||+.+|...| .|+|+.... .....+.+.||||+|.++=..
T Consensus 145 ~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiIS 222 (764)
T PRK12326 145 ALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLA 222 (764)
T ss_pred hcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeee
Confidence 9999999999988766544444 579999997665 455554321 124567899999999732100
Q ss_pred -------cHHHHHHHHHhCC------------------------------------------------------------
Q 007481 161 -------FSAEIHELVRLCP------------------------------------------------------------ 173 (602)
Q Consensus 161 -------f~~~i~~i~~~~~------------------------------------------------------------ 173 (602)
....+..+...+.
T Consensus 223 g~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~ 302 (764)
T PRK12326 223 GSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDV 302 (764)
T ss_pred CCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCC
Confidence 0000000000000
Q ss_pred ----------------------------------------------------------CCcceeeeeccCChhHHHHHHH
Q 007481 174 ----------------------------------------------------------KRRQTMLFSATLTEDVDELIKL 195 (602)
Q Consensus 174 ----------------------------------------------------------~~~q~il~SAT~~~~~~~l~~~ 195 (602)
.-..+.+||+|......++...
T Consensus 303 dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~i 382 (764)
T PRK12326 303 HYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQF 382 (764)
T ss_pred cEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHH
Confidence 0014567777776665555544
Q ss_pred hcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhh-hcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeecc
Q 007481 196 SLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELH 274 (602)
Q Consensus 196 ~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~-~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lh 274 (602)
+-...+.+. +. .|......-..+.......-..++..+.. ...+.+|||.|.|....+.++..|...|++...|+
T Consensus 383 Y~l~Vv~IP---tn-kp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLN 458 (764)
T PRK12326 383 YDLGVSVIP---PN-KPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLN 458 (764)
T ss_pred hCCcEEECC---CC-CCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeec
Confidence 433322221 11 11111111011111112222223333322 23578999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcC-CceEEEEcCccccccCcC---------------CccEEEEcCCCCChhhHHHHhhhcccCC
Q 007481 275 GNLTQAQRLEALELFRKQ-HVDFLIATDVAARGLDII---------------GVQTVINYACPRDLTSYVHRVGRTARAG 338 (602)
Q Consensus 275 g~~~~~eR~~il~~F~~g-~~~iLVaT~~~~~GlDip---------------~v~~VI~~d~p~s~~~yiQriGRa~R~g 338 (602)
..-...+ .+++.. .| .-.|.|||++++||.||. +=-+||-...|.|...--|-.||+||.|
T Consensus 459 Ak~~~~E-A~IIa~--AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQG 535 (764)
T PRK12326 459 AKNDAEE-ARIIAE--AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQG 535 (764)
T ss_pred cCchHhH-HHHHHh--cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCC
Confidence 8644332 333322 34 446889999999999995 2347999999999999999999999999
Q ss_pred CcceEEEEEecCcHHH
Q 007481 339 REGYAVTFVTDNDRSL 354 (602)
Q Consensus 339 ~~g~~i~l~~~~d~~~ 354 (602)
.+|.+..|++-.|.-+
T Consensus 536 DpGss~f~lSleDdl~ 551 (764)
T PRK12326 536 DPGSSVFFVSLEDDVV 551 (764)
T ss_pred CCCceeEEEEcchhHH
Confidence 9999999999877544
No 119
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.85 E-value=7.1e-20 Score=175.45 Aligned_cols=188 Identities=40% Similarity=0.607 Sum_probs=154.2
Q ss_pred HCCCCCCcHHHHHHHHHHhcC-CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHh
Q 007481 15 ALGYSKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 93 (602)
Q Consensus 15 ~~g~~~pt~~Q~~~i~~~l~g-~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~ 93 (602)
..++..|+++|.++++.++.+ +++++.++||||||.++..+++..+.... ..++||++|+..++.|+...+..+.
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~----~~~~l~~~p~~~~~~~~~~~~~~~~ 78 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK----GKRVLVLVPTRELAEQWAEELKKLG 78 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC----CCcEEEEeCCHHHHHHHHHHHHHHh
Confidence 467889999999999999998 99999999999999988888887765432 2369999999999999999999877
Q ss_pred hcCCceEEEEECCCCHHHHHHHHcCCC-cEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhC
Q 007481 94 QFTDIRCCLVVGGLSTKMQETALRSMP-DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172 (602)
Q Consensus 94 ~~~~i~v~~~~g~~~~~~~~~~l~~~~-~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~ 172 (602)
...........++......+..+.... +|+++|++.+.+.+.... .....++++||||||.+....+...+..++..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 157 (201)
T smart00487 79 PSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL-LELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL 157 (201)
T ss_pred ccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC-cCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC
Confidence 655434455555555444555555555 999999999999988743 566778899999999999766888888998888
Q ss_pred CCCcceeeeeccCChhHHHHHHHhcCCCeEEecCC
Q 007481 173 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADP 207 (602)
Q Consensus 173 ~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~ 207 (602)
+...+++++|||+++........++..++.+....
T Consensus 158 ~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 158 PKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred CccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 88899999999999999998888888777666543
No 120
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.85 E-value=6.1e-20 Score=197.28 Aligned_cols=326 Identities=18% Similarity=0.200 Sum_probs=217.9
Q ss_pred CCCCCcHHHHHHHHHHhc----CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHH
Q 007481 17 GYSKPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 92 (602)
Q Consensus 17 g~~~pt~~Q~~~i~~~l~----g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l 92 (602)
|++ +-+||.-.+.++.- +=+.|+...+|.|||.. +++.|..|..... +| .-|||||...|-. |.++|.+|
T Consensus 397 ~i~-LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~--~g-pHLVVvPsSTleN-WlrEf~kw 470 (941)
T KOG0389|consen 397 GIQ-LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGN--PG-PHLVVVPSSTLEN-WLREFAKW 470 (941)
T ss_pred CCc-ccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCC--CC-CcEEEecchhHHH-HHHHHHHh
Confidence 444 88999999988763 55789999999999964 3444544443332 23 4699999998844 66777776
Q ss_pred hhcCCceEEEEECCCCHHHHHHHH----cCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHH
Q 007481 93 AQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 168 (602)
Q Consensus 93 ~~~~~i~v~~~~g~~~~~~~~~~l----~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i 168 (602)
|. .++|...+|......+.+.. ....+|+|+|+.-....-.....+.-.+|+++|+||+|.+.+.+ ...+..+
T Consensus 471 CP--sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~L 547 (941)
T KOG0389|consen 471 CP--SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHL 547 (941)
T ss_pred CC--ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHh
Confidence 63 67888888876544333322 22579999998765422111112233457899999999988874 4445555
Q ss_pred HHhCCCCcceeeeeccCCh-hHHHHHHHh---c-----------------------------------------CCCe--
Q 007481 169 VRLCPKRRQTMLFSATLTE-DVDELIKLS---L-----------------------------------------TKPL-- 201 (602)
Q Consensus 169 ~~~~~~~~q~il~SAT~~~-~~~~l~~~~---l-----------------------------------------~~p~-- 201 (602)
+..- ..+.+++|+||-. ++.+++.+. + -.|+
T Consensus 548 M~I~--An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFIL 625 (941)
T KOG0389|consen 548 MSIN--ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFIL 625 (941)
T ss_pred cccc--ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHH
Confidence 4432 4556888888732 222221100 0 0000
Q ss_pred ----------------EEecC-------------------------CCCCCCC--Cc-------eeee------------
Q 007481 202 ----------------RLSAD-------------------------PSAKRPS--TL-------TEEV------------ 219 (602)
Q Consensus 202 ----------------~~~~~-------------------------~~~~~~~--~l-------~~~~------------ 219 (602)
.+... ....... .+ .|.+
T Consensus 626 RR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~ 705 (941)
T KOG0389|consen 626 RRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLR 705 (941)
T ss_pred HHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHH
Confidence 00000 0000000 00 0000
Q ss_pred ----------------------------------------------eeechhhhhhHHHHHHHHhh--hcCCCeEEEEeC
Q 007481 220 ----------------------------------------------VRIRRMREVNQEAVLLSLCS--KTFTSKVIIFSG 251 (602)
Q Consensus 220 ----------------------------------------------~~~~~~~~~~k~~~l~~l~~--~~~~~kvIIF~~ 251 (602)
+.-.+.....++..|..++. ...+++||||..
T Consensus 706 ~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQ 785 (941)
T KOG0389|consen 706 KMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQ 785 (941)
T ss_pred HHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeH
Confidence 00001112233444444444 234689999999
Q ss_pred cHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCC--ceEEEEcCccccccCcCCccEEEEcCCCCChhhHHH
Q 007481 252 TKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH--VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVH 329 (602)
Q Consensus 252 s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~--~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQ 329 (602)
-..+.+.|..+|...++....|.|.+...+|..++..|...+ +-+|++|.+++.|||+..+++||.||+..||-.-.|
T Consensus 786 FTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~Q 865 (941)
T KOG0389|consen 786 FTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQ 865 (941)
T ss_pred HHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccch
Confidence 999999999999999999999999999999999999999753 346899999999999999999999999999999999
Q ss_pred HhhhcccCCC--cceEEEEEecCcHH
Q 007481 330 RVGRTARAGR--EGYAVTFVTDNDRS 353 (602)
Q Consensus 330 riGRa~R~g~--~g~~i~l~~~~d~~ 353 (602)
.-.||+|.|+ +-.++-|++.++.+
T Consensus 866 AEDRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 866 AEDRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred hHHHHHhhCCcceeEEEEEEecCcHH
Confidence 9999999985 57788889988754
No 121
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.85 E-value=1.1e-19 Score=202.26 Aligned_cols=325 Identities=18% Similarity=0.194 Sum_probs=209.1
Q ss_pred CCcHHHHHHHHHHhc----CCCEEEEcCCCchHHHHHHHHHHHHHHcC---CCCCCCcEEEEEcChHHHHHHHHHHHHHH
Q 007481 20 KPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYR---PKRIPAIRVLILTPTRELAVQVHSMIEKI 92 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~----g~dvii~a~TGSGKT~a~~l~il~~l~~~---~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l 92 (602)
.++.||++.+.++.- +=+.|+|..+|.|||+..+..+......+ .........|||||. .|+-.|..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 458899999987642 45899999999999987654443333332 112344558999998 5888899999999
Q ss_pred hhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhC
Q 007481 93 AQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172 (602)
Q Consensus 93 ~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~ 172 (602)
+.+ +++...+|........+.--++++|+|+.|+.+.+-+... .-..|.++|+||-|.+.+. ...+......+
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l---~~~~wNYcVLDEGHVikN~--ktkl~kavkqL 1126 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYL---IKIDWNYCVLDEGHVIKNS--KTKLTKAVKQL 1126 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHH---HhcccceEEecCcceecch--HHHHHHHHHHH
Confidence 877 5666677766555555555566899999999886332211 1124779999999998775 22333333333
Q ss_pred CCCcceeeeeccCC-hhHHHHHHHh---c--------------CCCe---------------------------------
Q 007481 173 PKRRQTMLFSATLT-EDVDELIKLS---L--------------TKPL--------------------------------- 201 (602)
Q Consensus 173 ~~~~q~il~SAT~~-~~~~~l~~~~---l--------------~~p~--------------------------------- 201 (602)
... ..+.+|+||- +++.++..++ + .+|+
T Consensus 1127 ~a~-hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LR 1205 (1549)
T KOG0392|consen 1127 RAN-HRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLR 1205 (1549)
T ss_pred hhc-ceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHH
Confidence 322 2366778773 2333321110 0 0000
Q ss_pred -----------------------------------------EEecCCCCCCCCCc---------------eeeeeeech-
Q 007481 202 -----------------------------------------RLSADPSAKRPSTL---------------TEEVVRIRR- 224 (602)
Q Consensus 202 -----------------------------------------~~~~~~~~~~~~~l---------------~~~~~~~~~- 224 (602)
.-..+......... .+......+
T Consensus 1206 RlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~ 1285 (1549)
T KOG0392|consen 1206 RLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPV 1285 (1549)
T ss_pred HHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCC
Confidence 00000000000000 000000000
Q ss_pred --------------------hhhhhHHHHHHHHhhh----------------cCCCeEEEEeCcHHHHHHHHHHHhhcC-
Q 007481 225 --------------------MREVNQEAVLLSLCSK----------------TFTSKVIIFSGTKQAAHRLKILFGLAA- 267 (602)
Q Consensus 225 --------------------~~~~~k~~~l~~l~~~----------------~~~~kvIIF~~s~~~a~~l~~~L~~~g- 267 (602)
.....+...|..++.. ..++++||||.-+.+++.+.+-|-..-
T Consensus 1286 hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~m 1365 (1549)
T KOG0392|consen 1286 HPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYM 1365 (1549)
T ss_pred cchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhc
Confidence 0111122233333211 134699999999999999977665442
Q ss_pred --CceeeccCCCCHHHHHHHHHHHhcC-CceEE-EEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcc--
Q 007481 268 --LKAAELHGNLTQAQRLEALELFRKQ-HVDFL-IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREG-- 341 (602)
Q Consensus 268 --~~~~~lhg~~~~~eR~~il~~F~~g-~~~iL-VaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g-- 341 (602)
+....|.|+.++.+|.++.++|+++ .++|| ++|.+++-|||+.++++||.++-.|||..-.|.+.||+|.|+.-
T Consensus 1366 psVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvV 1445 (1549)
T KOG0392|consen 1366 PSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVV 1445 (1549)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceee
Confidence 3344799999999999999999998 78876 66799999999999999999999999999999999999999664
Q ss_pred eEEEEEecCcHH
Q 007481 342 YAVTFVTDNDRS 353 (602)
Q Consensus 342 ~~i~l~~~~d~~ 353 (602)
.||-|++.++.+
T Consensus 1446 NVyRlItrGTLE 1457 (1549)
T KOG0392|consen 1446 NVYRLITRGTLE 1457 (1549)
T ss_pred eeeeehhcccHH
Confidence 456667777643
No 122
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.85 E-value=1e-20 Score=207.63 Aligned_cols=323 Identities=15% Similarity=0.174 Sum_probs=212.5
Q ss_pred CCCcHHHHHHHHHHhc----CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 19 SKPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 19 ~~pt~~Q~~~i~~~l~----g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
-++.+||...+.++.. +=|.|+...||.|||... +.++..++.... ..| ..||+||+..|.. |...|..|+.
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQt-IsLitYLmE~K~-~~G-P~LvivPlstL~N-W~~Ef~kWaP 468 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQT-ISLITYLMEHKQ-MQG-PFLIIVPLSTLVN-WSSEFPKWAP 468 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHH-HHHHHHHHHHcc-cCC-CeEEeccccccCC-chhhcccccc
Confidence 3789999999998875 347899999999999764 444444444332 233 3899999999977 7777777653
Q ss_pred cCCceEEEEECCCCH--HHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhC
Q 007481 95 FTDIRCCLVVGGLST--KMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172 (602)
Q Consensus 95 ~~~i~v~~~~g~~~~--~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~ 172 (602)
.+......|.... ..+.....+.++|+++|++.++. ....+.--.|.++||||.|+|.+. ...+...+...
T Consensus 469 --Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik---dk~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~L~t~ 541 (1157)
T KOG0386|consen 469 --SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK---DKALLSKISWKYMIIDEGHRMKNA--ICKLTDTLNTH 541 (1157)
T ss_pred --ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC---CHHHHhccCCcceeecccccccch--hhHHHHHhhcc
Confidence 4444444443221 12233345778999999998875 111122345779999999998774 22333333322
Q ss_pred CCCcceeeeeccCChh----HHHH--------------------------------------------------------
Q 007481 173 PKRRQTMLFSATLTED----VDEL-------------------------------------------------------- 192 (602)
Q Consensus 173 ~~~~q~il~SAT~~~~----~~~l-------------------------------------------------------- 192 (602)
-.....+++|+||..+ +..+
T Consensus 542 y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRl 621 (1157)
T KOG0386|consen 542 YRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRL 621 (1157)
T ss_pred ccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhh
Confidence 2233345566665211 0000
Q ss_pred ---------------------------------------------------------HHHhcCCCeEEecCCCCCCCCCc
Q 007481 193 ---------------------------------------------------------IKLSLTKPLRLSADPSAKRPSTL 215 (602)
Q Consensus 193 ---------------------------------------------------------~~~~l~~p~~~~~~~~~~~~~~l 215 (602)
....|+.|..+.-......+...
T Consensus 622 KkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~ 701 (1157)
T KOG0386|consen 622 KKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYD 701 (1157)
T ss_pred hHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccC
Confidence 01111111111000000000000
Q ss_pred eeeeeeechhhhhhHHHHHHHHhh--hcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC-
Q 007481 216 TEEVVRIRRMREVNQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ- 292 (602)
Q Consensus 216 ~~~~~~~~~~~~~~k~~~l~~l~~--~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g- 292 (602)
. ..-.+...+..+|..++. ...+++||+||........+..+|...++....+.|.+...+|...+..|+.-
T Consensus 702 ~-----~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pd 776 (1157)
T KOG0386|consen 702 I-----KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPD 776 (1157)
T ss_pred h-----hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCC
Confidence 0 011123344455555554 34578999999999999999999999999999999999999999999999974
Q ss_pred --CceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHH
Q 007481 293 --HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 357 (602)
Q Consensus 293 --~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~ 357 (602)
-+.+|++|.+.+.|+|++.+++||+||..|++..+.|+..|++|.|....|-++......++-..
T Consensus 777 s~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~ 843 (1157)
T KOG0386|consen 777 SPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEK 843 (1157)
T ss_pred CceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHH
Confidence 45578999999999999999999999999999999999999999997666555544443333333
No 123
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.84 E-value=8.4e-20 Score=198.83 Aligned_cols=300 Identities=20% Similarity=0.235 Sum_probs=195.2
Q ss_pred CCCCCcHHHHHHHHHHhc----C-CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHH
Q 007481 17 GYSKPTPIQAACIPLALT----G-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 91 (602)
Q Consensus 17 g~~~pt~~Q~~~i~~~l~----g-~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~ 91 (602)
+-..|++||..||..+.. | +.+++++.||+|||.++ +.++.+|+.... ..+||+|+.+..|+.|.+..+..
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~~---~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSGW---VKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcch---hheeeEEechHHHHHHHHHHHHH
Confidence 334689999999977654 4 34889999999999875 666666665432 34799999999999999999888
Q ss_pred HhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHcc----CCCCCCCcceEEEeCccccccCCcHHHHHH
Q 007481 92 IAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS----MSVDLDDLAVLILDEADRLLELGFSAEIHE 167 (602)
Q Consensus 92 l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~----~~~~l~~l~llVlDEah~l~~~gf~~~i~~ 167 (602)
+..+. -.+..+.+-.. ...+.|.|+|+++|...+... ..+....+++||+||||+-. ......
T Consensus 238 ~~P~~-~~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~~ 304 (875)
T COG4096 238 FLPFG-TKMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YSEWSS 304 (875)
T ss_pred hCCCc-cceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----HhhhHH
Confidence 75542 22222332211 124689999999999887653 23566779999999999843 333345
Q ss_pred HHHhCCCCcceeeeeccCChhHHHHHHHhc-CCCeE--------------------EecC--CCCCCCCCce--------
Q 007481 168 LVRLCPKRRQTMLFSATLTEDVDELIKLSL-TKPLR--------------------LSAD--PSAKRPSTLT-------- 216 (602)
Q Consensus 168 i~~~~~~~~q~il~SAT~~~~~~~l~~~~l-~~p~~--------------------~~~~--~~~~~~~~l~-------- 216 (602)
|+.++..-. +++||||...+....-.++ ..|+. +... .....+....
T Consensus 305 I~dYFdA~~--~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~ 382 (875)
T COG4096 305 ILDYFDAAT--QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGE 382 (875)
T ss_pred HHHHHHHHH--HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcc
Confidence 555554333 4459999765444333333 33322 1111 1111111110
Q ss_pred -----eeeeeec--------hhhhhhHHHHHHHHhhh--cC--CCeEEEEeCcHHHHHHHHHHHhhc-----CCceeecc
Q 007481 217 -----EEVVRIR--------RMREVNQEAVLLSLCSK--TF--TSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELH 274 (602)
Q Consensus 217 -----~~~~~~~--------~~~~~~k~~~l~~l~~~--~~--~~kvIIF~~s~~~a~~l~~~L~~~-----g~~~~~lh 274 (602)
....... +.....-...+...+.. .. -+++||||.+..+|+++...|... |-=+..+.
T Consensus 383 ~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT 462 (875)
T COG4096 383 AIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKIT 462 (875)
T ss_pred ccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEe
Confidence 0000000 00001112233334443 22 369999999999999999988754 22355677
Q ss_pred CCCCHHHHHHHHHHHhcC--CceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccC
Q 007481 275 GNLTQAQRLEALELFRKQ--HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 337 (602)
Q Consensus 275 g~~~~~eR~~il~~F~~g--~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~ 337 (602)
|+-.+.+ ..+..|... -..|.|+.+++..|+|+|.|..+|.+-.-.|..-|.|++||.-|.
T Consensus 463 ~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 463 GDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred ccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 7655543 446666552 446888899999999999999999999999999999999998883
No 124
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=4.5e-18 Score=190.15 Aligned_cols=321 Identities=18% Similarity=0.194 Sum_probs=214.0
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 15 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 15 ~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
.+| -.|++.|--.--.+ ...-|+.+.||+|||+++.+|++...+. +..|-|++||-.||.|-++++..+..
T Consensus 78 ~lG-m~~ydVQliGg~~L--h~G~iaEM~TGEGKTLvA~l~a~l~al~------G~~VhvvT~ndyLA~RD~e~m~~l~~ 148 (913)
T PRK13103 78 VMG-MRHFDVQLIGGMTL--HEGKIAEMRTGEGKTLVGTLAVYLNALS------GKGVHVVTVNDYLARRDANWMRPLYE 148 (913)
T ss_pred HhC-CCcchhHHHhhhHh--ccCccccccCCCCChHHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHHHhc
Confidence 446 44677775443333 4566899999999999999999876654 34599999999999999999999999
Q ss_pred cCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHH-HHHHHccCCC-----CCCCcceEEEeCccccc-cCC-------
Q 007481 95 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSV-----DLDDLAVLILDEADRLL-ELG------- 160 (602)
Q Consensus 95 ~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L-~~~l~~~~~~-----~l~~l~llVlDEah~l~-~~g------- 160 (602)
+.+++|+++.++.+.......+. ++|+++|..-| .|+|+....+ -...+.++||||+|.++ +..
T Consensus 149 ~lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIIS 226 (913)
T PRK13103 149 FLGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIIS 226 (913)
T ss_pred ccCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeec
Confidence 99999999999877665554443 89999998876 6666654222 23678899999999843 100
Q ss_pred --------cHHHHHHHHHhC------------------------------------------------------------
Q 007481 161 --------FSAEIHELVRLC------------------------------------------------------------ 172 (602)
Q Consensus 161 --------f~~~i~~i~~~~------------------------------------------------------------ 172 (602)
....+..+...+
T Consensus 227 g~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~ 306 (913)
T PRK13103 227 GQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGL 306 (913)
T ss_pred CCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHH
Confidence 000000000000
Q ss_pred --------------C-------------------------------------------------------------CCcc
Q 007481 173 --------------P-------------------------------------------------------------KRRQ 177 (602)
Q Consensus 173 --------------~-------------------------------------------------------------~~~q 177 (602)
. .-..
T Consensus 307 ~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~k 386 (913)
T PRK13103 307 LTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNK 386 (913)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcch
Confidence 0 0013
Q ss_pred eeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHH-HHHHHHhh-hcCCCeEEEEeCcHHH
Q 007481 178 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE-AVLLSLCS-KTFTSKVIIFSGTKQA 255 (602)
Q Consensus 178 ~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~-~~l~~l~~-~~~~~kvIIF~~s~~~ 255 (602)
+.+||+|......++...+-...+.+....+..+. ..... +. . ....+. .++..+.. ...+.+|||-|.|...
T Consensus 387 LsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~-D~~d~-vy--~-t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~ 461 (913)
T PRK13103 387 LSGMTGTADTEAFEFRQIYGLDVVVIPPNKPLARK-DFNDL-VY--L-TAEEKYAAIITDIKECMALGRPVLVGTATIET 461 (913)
T ss_pred hccCCCCCHHHHHHHHHHhCCCEEECCCCCCcccc-cCCCe-EE--c-CHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHH
Confidence 45666666555555444443332222221111111 11111 11 1 112233 33333332 2357899999999999
Q ss_pred HHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC-CceEEEEcCccccccCcC------------------------
Q 007481 256 AHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ-HVDFLIATDVAARGLDII------------------------ 310 (602)
Q Consensus 256 a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g-~~~iLVaT~~~~~GlDip------------------------ 310 (602)
.+.++..|...|++.-+|+.... +++..+-. ..| .-.|.|||++++||.||.
T Consensus 462 SE~ls~~L~~~gi~h~VLNAk~~--~~EA~IIa-~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~ 538 (913)
T PRK13103 462 SEHMSNLLKKEGIEHKVLNAKYH--EKEAEIIA-QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIK 538 (913)
T ss_pred HHHHHHHHHHcCCcHHHhccccc--hhHHHHHH-cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHH
Confidence 99999999999999888887644 33322222 335 456899999999999994
Q ss_pred -------------CccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHH
Q 007481 311 -------------GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 354 (602)
Q Consensus 311 -------------~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~ 354 (602)
+=-+||-...|.|...--|-.||+||.|.+|.+-+|++-.|.-+
T Consensus 539 ~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~Lm 595 (913)
T PRK13103 539 ADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSLM 595 (913)
T ss_pred HHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 22478889999999999999999999999999999999876544
No 125
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.83 E-value=1.7e-19 Score=202.16 Aligned_cols=316 Identities=17% Similarity=0.195 Sum_probs=216.8
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHh-hcCCceE
Q 007481 22 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA-QFTDIRC 100 (602)
Q Consensus 22 t~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~-~~~~i~v 100 (602)
+..+.+.+..+.++..++|+|.||+|||+..---+++....+. ..+++++--|.|--|.-+++++..=- .-.+-.|
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~---~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~V 251 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG---AACNIICTQPRRISAISVAERVAKERGESLGEEV 251 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC---CCCeEEecCCchHHHHHHHHHHHHHhccccCCee
Confidence 5667788888888999999999999999854444566655554 56679999999998888887765422 2234444
Q ss_pred EEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccc-cccCCcHHHHHHHHHhCCCCccee
Q 007481 101 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR-LLELGFSAEIHELVRLCPKRRQTM 179 (602)
Q Consensus 101 ~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~-l~~~gf~~~i~~i~~~~~~~~q~i 179 (602)
+.-++..+. ......+.+||.|.|++.+.. ...+..+..||+||+|. -.+..|...+...+-...+..++|
T Consensus 252 GYqvrl~~~------~s~~t~L~fcTtGvLLr~L~~--~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvI 323 (924)
T KOG0920|consen 252 GYQVRLESK------RSRETRLLFCTTGVLLRRLQS--DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVI 323 (924)
T ss_pred eEEEeeecc------cCCceeEEEecHHHHHHHhcc--CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEE
Confidence 443332221 223368999999999999987 56688899999999995 334445544444444445788999
Q ss_pred eeeccCChhHHHHHHHhcCCCeEEecCCCCCCC---------------CCceeee-----------eeech--hhhhhHH
Q 007481 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRP---------------STLTEEV-----------VRIRR--MREVNQE 231 (602)
Q Consensus 180 l~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~---------------~~l~~~~-----------~~~~~--~~~~~k~ 231 (602)
+||||+..+. +...+...|+........... ....+.. +.+.. ..-..-.
T Consensus 324 LMSAT~dae~--fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~ 401 (924)
T KOG0920|consen 324 LMSATLDAEL--FSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIE 401 (924)
T ss_pred EeeeecchHH--HHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHH
Confidence 9999997332 222222223221111000000 0000000 00000 0011122
Q ss_pred HHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhc-------CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccc
Q 007481 232 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA-------ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 304 (602)
Q Consensus 232 ~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~-------g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~ 304 (602)
..+..++.....+.+|||.+.......+...|... .+-+..+|+.|+..++..+....-.|..+|+++|++++
T Consensus 402 ~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAE 481 (924)
T KOG0920|consen 402 DLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAE 481 (924)
T ss_pred HHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHh
Confidence 34455666666889999999999999999998642 24567899999999999999999999999999999999
Q ss_pred cccCcCCccEEEE--------cCCCC----------ChhhHHHHhhhcccCCCcceEEEEEecCc
Q 007481 305 RGLDIIGVQTVIN--------YACPR----------DLTSYVHRVGRTARAGREGYAVTFVTDND 351 (602)
Q Consensus 305 ~GlDip~v~~VI~--------~d~p~----------s~~~yiQriGRa~R~g~~g~~i~l~~~~d 351 (602)
.+|-|++|-+||. ||+-. |...-.||.|||||. .+|.||.+++...
T Consensus 482 TSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 482 TSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSR 545 (924)
T ss_pred hcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhh
Confidence 9999999999995 44433 556667999999994 7999999998753
No 126
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.83 E-value=2.2e-18 Score=190.16 Aligned_cols=327 Identities=18% Similarity=0.194 Sum_probs=209.3
Q ss_pred CCCcHHHHHHHHHHhc---C-------CCEEEEcCCCchHHHHHHHHHHHHHHcCCCC-C-CCcEEEEEcChHHHHHHHH
Q 007481 19 SKPTPIQAACIPLALT---G-------RDICGSAITGSGKTAAFALPTLERLLYRPKR-I-PAIRVLILTPTRELAVQVH 86 (602)
Q Consensus 19 ~~pt~~Q~~~i~~~l~---g-------~dvii~a~TGSGKT~a~~l~il~~l~~~~~~-~-~~~~vLiL~Ptr~La~Q~~ 86 (602)
..++|+|++.+..+.. | ..+|+...+|+|||+.. ++.+..++..... . --.+.|||||.. |+.-|+
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~-IsflwtlLrq~P~~~~~~~k~lVV~P~s-Lv~nWk 314 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQC-ISFIWTLLRQFPQAKPLINKPLVVAPSS-LVNNWK 314 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHH-HHHHHHHHHhCcCccccccccEEEccHH-HHHHHH
Confidence 3579999999988754 2 35778889999999874 5666655554221 0 014689999985 667799
Q ss_pred HHHHHHhhcCCceEEEEECCCCH--HHHHHHH-----cCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccC
Q 007481 87 SMIEKIAQFTDIRCCLVVGGLST--KMQETAL-----RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 159 (602)
Q Consensus 87 ~~~~~l~~~~~i~v~~~~g~~~~--~~~~~~l-----~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~ 159 (602)
++|.+|.....+....++|.... ..+...+ .-..-|+|.+++.+.+++.. +....+++||+||.|++-+.
T Consensus 315 kEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~~~glLVcDEGHrlkN~ 391 (776)
T KOG0390|consen 315 KEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLIRPGLLVCDEGHRLKNS 391 (776)
T ss_pred HHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcCCCCeEEECCCCCccch
Confidence 99999876556777777777663 1111111 12235788889999877764 34567889999999997664
Q ss_pred CcHHHHHHHHHhCCCCcceeeeeccCCh-hHHHHH---------------------------------------------
Q 007481 160 GFSAEIHELVRLCPKRRQTMLFSATLTE-DVDELI--------------------------------------------- 193 (602)
Q Consensus 160 gf~~~i~~i~~~~~~~~q~il~SAT~~~-~~~~l~--------------------------------------------- 193 (602)
. ...+..+ ..+ ..++.|++|+||-+ ++.+..
T Consensus 392 ~-s~~~kaL-~~l-~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~ 468 (776)
T KOG0390|consen 392 D-SLTLKAL-SSL-KTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQ 468 (776)
T ss_pred h-hHHHHHH-Hhc-CCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHH
Confidence 2 1122222 222 23345777777731 111110
Q ss_pred -----------------------------------------------------------------HHhcCCCeEEecCCC
Q 007481 194 -----------------------------------------------------------------KLSLTKPLRLSADPS 208 (602)
Q Consensus 194 -----------------------------------------------------------------~~~l~~p~~~~~~~~ 208 (602)
...++.|.-+.....
T Consensus 469 eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~ 548 (776)
T KOG0390|consen 469 ELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEK 548 (776)
T ss_pred HHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhccccc
Confidence 011111111100000
Q ss_pred C------CCCCCceeee-ee--echhhhhhHHHHHHHHhh---hcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCC
Q 007481 209 A------KRPSTLTEEV-VR--IRRMREVNQEAVLLSLCS---KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGN 276 (602)
Q Consensus 209 ~------~~~~~l~~~~-~~--~~~~~~~~k~~~l~~l~~---~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~ 276 (602)
. ..+..+.+.. .. ........+...|..+|. ......+.+..+.+...+.+...++..|+.++.|||.
T Consensus 549 ~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~ 628 (776)
T KOG0390|consen 549 TEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGK 628 (776)
T ss_pred ccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCC
Confidence 0 0000000000 00 000111223344555542 2223466667778888888888888889999999999
Q ss_pred CCHHHHHHHHHHHhcCC---ceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEE--EEecCc
Q 007481 277 LTQAQRLEALELFRKQH---VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT--FVTDND 351 (602)
Q Consensus 277 ~~~~eR~~il~~F~~g~---~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~--l~~~~d 351 (602)
|+..+|..+++.|++.. .-+|.+|.+.++||++-+++.||.||++|||..-.|++.|+.|.|+.-.|++ |++.++
T Consensus 629 ~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGt 708 (776)
T KOG0390|consen 629 TSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGT 708 (776)
T ss_pred CchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCC
Confidence 99999999999999743 4467889999999999999999999999999999999999999997655555 466654
Q ss_pred HH
Q 007481 352 RS 353 (602)
Q Consensus 352 ~~ 353 (602)
.+
T Consensus 709 iE 710 (776)
T KOG0390|consen 709 IE 710 (776)
T ss_pred ch
Confidence 33
No 127
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=5e-19 Score=186.79 Aligned_cols=305 Identities=17% Similarity=0.210 Sum_probs=201.0
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHH-HHhhcCCceE
Q 007481 22 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE-KIAQFTDIRC 100 (602)
Q Consensus 22 t~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~-~l~~~~~i~v 100 (602)
+++-.+.+.++-...-+||.|.||||||. +||-+ |....-...+.++-+--|.|..|+.++..+. .+....|-.|
T Consensus 267 y~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQy--L~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eV 342 (902)
T KOG0923|consen 267 YPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQY--LYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEV 342 (902)
T ss_pred hhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHH--HHhcccccCCceEeecCcchHHHHHHHHHHHHHhCccccccc
Confidence 55666677777778888999999999997 46653 2211111223347888899999988765543 3322222222
Q ss_pred EEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccc-cccCCcH-HHHHHHHHhCCCCcce
Q 007481 101 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR-LLELGFS-AEIHELVRLCPKRRQT 178 (602)
Q Consensus 101 ~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~-l~~~gf~-~~i~~i~~~~~~~~q~ 178 (602)
+.-.- .+.......-|-++|.|+|+.-+.. .++|..+++|||||||. .+..... -.+..|. .+.+...+
T Consensus 343 GYsIR------FEdcTSekTvlKYMTDGmLlREfL~--epdLasYSViiiDEAHERTL~TDILfgLvKDIa-r~RpdLKl 413 (902)
T KOG0923|consen 343 GYSIR------FEDCTSEKTVLKYMTDGMLLREFLS--EPDLASYSVIIVDEAHERTLHTDILFGLVKDIA-RFRPDLKL 413 (902)
T ss_pred ceEEE------eccccCcceeeeeecchhHHHHHhc--cccccceeEEEeehhhhhhhhhhHHHHHHHHHH-hhCCcceE
Confidence 11110 1111223345779999999988876 56899999999999995 3333222 2233333 34467889
Q ss_pred eeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHH-HHH---HHhhhcCCCeEEEEeCcHH
Q 007481 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA-VLL---SLCSKTFTSKVIIFSGTKQ 254 (602)
Q Consensus 179 il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~-~l~---~l~~~~~~~kvIIF~~s~~ 254 (602)
+..|||+..+ .+...+-..|+...... .... . +.+....+.+... .+. .+....+.+-+|||....+
T Consensus 414 lIsSAT~DAe--kFS~fFDdapIF~iPGR-RyPV----d--i~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQe 484 (902)
T KOG0923|consen 414 LISSATMDAE--KFSAFFDDAPIFRIPGR-RYPV----D--IFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQE 484 (902)
T ss_pred EeeccccCHH--HHHHhccCCcEEeccCc-ccce----e--eecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHH
Confidence 9999999643 44445555565443211 1111 1 1111112222222 222 2233455688999999988
Q ss_pred HHHHHHHHHhh----cC-----CceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEE--------
Q 007481 255 AAHRLKILFGL----AA-----LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN-------- 317 (602)
Q Consensus 255 ~a~~l~~~L~~----~g-----~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~-------- 317 (602)
..+...+.|.. +| +-++.+|++++++.+..|.+---.|.-.|++||++++.+|-|+++.+||.
T Consensus 485 EIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~ns 564 (902)
T KOG0923|consen 485 EIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNS 564 (902)
T ss_pred HHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccC
Confidence 88777666643 23 45778999999999999998888899999999999999999999999995
Q ss_pred cC----------CCCChhhHHHHhhhcccCCCcceEEEEEec
Q 007481 318 YA----------CPRDLTSYVHRVGRTARAGREGYAVTFVTD 349 (602)
Q Consensus 318 ~d----------~p~s~~~yiQriGRa~R~g~~g~~i~l~~~ 349 (602)
|+ .|-|..+-.||.|||||.| +|.|+-|++.
T Consensus 565 ynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 565 YNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred cCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeech
Confidence 22 2447788899999999965 9999999984
No 128
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=4.6e-17 Score=180.26 Aligned_cols=321 Identities=20% Similarity=0.201 Sum_probs=214.7
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 15 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 15 ~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
.+|. .|++.|--.--.+..| -|..+.||-|||+++.+|+.-..+.. ..|-|++.+-.||..=++++..+..
T Consensus 74 ~lG~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~G------kgVhVVTvNdYLA~RDae~mg~vy~ 144 (925)
T PRK12903 74 VLGK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALTG------KGVIVSTVNEYLAERDAEEMGKVFN 144 (925)
T ss_pred HhCC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhcC------CceEEEecchhhhhhhHHHHHHHHH
Confidence 3464 5888887776666555 47999999999999999987555443 3488889999999998999999999
Q ss_pred cCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHH-HHHHHccCCC-----CCCCcceEEEeCccccc-cCC-------
Q 007481 95 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSV-----DLDDLAVLILDEADRLL-ELG------- 160 (602)
Q Consensus 95 ~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L-~~~l~~~~~~-----~l~~l~llVlDEah~l~-~~g------- 160 (602)
+.|++|+++..+.+....... ..+||+.+|...| +|+|+.+..+ -...+.+.||||+|.++ +..
T Consensus 145 fLGLsvG~i~~~~~~~~rr~a--Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIIS 222 (925)
T PRK12903 145 FLGLSVGINKANMDPNLKREA--YACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIIS 222 (925)
T ss_pred HhCCceeeeCCCCChHHHHHh--ccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCccccc
Confidence 999999999887776544433 3589999997765 6677654322 24567789999999732 100
Q ss_pred --------cHHHHHHHHHhCC-----------------------------------------------------------
Q 007481 161 --------FSAEIHELVRLCP----------------------------------------------------------- 173 (602)
Q Consensus 161 --------f~~~i~~i~~~~~----------------------------------------------------------- 173 (602)
+...+..+...+.
T Consensus 223 g~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~d 302 (925)
T PRK12903 223 GGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVE 302 (925)
T ss_pred CCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCc
Confidence 0000111111000
Q ss_pred ---------------------------------------------------------CCcceeeeeccCChhHHHHHHHh
Q 007481 174 ---------------------------------------------------------KRRQTMLFSATLTEDVDELIKLS 196 (602)
Q Consensus 174 ---------------------------------------------------------~~~q~il~SAT~~~~~~~l~~~~ 196 (602)
.-..+.+||+|......++...+
T Consensus 303 YiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY 382 (925)
T PRK12903 303 YIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIY 382 (925)
T ss_pred eEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHh
Confidence 00135567777655555555444
Q ss_pred cCCCeEEecCCCCCCCCCceeeeeeechhhhhhHH-HHHHHHhhh-cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeecc
Q 007481 197 LTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE-AVLLSLCSK-TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELH 274 (602)
Q Consensus 197 l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~-~~l~~l~~~-~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lh 274 (602)
-...+.+... .|......-..+.. ....+. .++..+... ..+.+|||.|.|...++.++..|...|++..+|+
T Consensus 383 ~l~Vv~IPTn----kP~~R~D~~d~iy~-t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLN 457 (925)
T PRK12903 383 NMRVNVVPTN----KPVIRKDEPDSIFG-TKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLN 457 (925)
T ss_pred CCCEEECCCC----CCeeeeeCCCcEEE-cHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeec
Confidence 3332222111 11111111000111 112222 233333322 3578999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHhcC-CceEEEEcCccccccCcCCc--------cEEEEcCCCCChhhHHHHhhhcccCCCcceEEE
Q 007481 275 GNLTQAQRLEALELFRKQ-HVDFLIATDVAARGLDIIGV--------QTVINYACPRDLTSYVHRVGRTARAGREGYAVT 345 (602)
Q Consensus 275 g~~~~~eR~~il~~F~~g-~~~iLVaT~~~~~GlDip~v--------~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~ 345 (602)
.. +.+++..+-. ..| .-.|.|||++++||.||.-- -+||....|.|...--|..||+||.|.+|.+.+
T Consensus 458 Ak--~~e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f 534 (925)
T PRK12903 458 AK--QNAREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRF 534 (925)
T ss_pred cc--chhhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceE
Confidence 85 3344443333 446 45789999999999999532 289999999999999999999999999999999
Q ss_pred EEecCcHHH
Q 007481 346 FVTDNDRSL 354 (602)
Q Consensus 346 l~~~~d~~~ 354 (602)
|++-.|.-+
T Consensus 535 ~lSLeD~L~ 543 (925)
T PRK12903 535 FISLDDQLF 543 (925)
T ss_pred EEecchHHH
Confidence 998776544
No 129
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.80 E-value=1.8e-17 Score=190.70 Aligned_cols=325 Identities=18% Similarity=0.216 Sum_probs=197.9
Q ss_pred CCCCCcHHHHHHH---HHHh-cCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHH-HHHHHH
Q 007481 17 GYSKPTPIQAACI---PLAL-TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV-HSMIEK 91 (602)
Q Consensus 17 g~~~pt~~Q~~~i---~~~l-~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~-~~~~~~ 91 (602)
|| .++|-|.+-. ...+ .+..+++.|+||+|||++|++|++... .+.++||++||++|+.|+ ...+..
T Consensus 243 ~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-------~~~~vvI~t~T~~Lq~Ql~~~~i~~ 314 (820)
T PRK07246 243 GL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-------DQRQIIVSVPTKILQDQIMAEEVKA 314 (820)
T ss_pred CC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-------CCCcEEEEeCcHHHHHHHHHHHHHH
Confidence 55 4899999944 3333 467888999999999999999988753 235799999999999999 577888
Q ss_pred HhhcCCceEEEEECCCCHHH-----------------------------------------------HHHHH--------
Q 007481 92 IAQFTDIRCCLVVGGLSTKM-----------------------------------------------QETAL-------- 116 (602)
Q Consensus 92 l~~~~~i~v~~~~g~~~~~~-----------------------------------------------~~~~l-------- 116 (602)
+.+..++++.++.|+.++-- -|..+
T Consensus 315 l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~ 394 (820)
T PRK07246 315 IQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQ 394 (820)
T ss_pred HHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCC
Confidence 88888888888887643110 01110
Q ss_pred ----------------cCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC-----c-------HH-----
Q 007481 117 ----------------RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-----F-------SA----- 163 (602)
Q Consensus 117 ----------------~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g-----f-------~~----- 163 (602)
...++|||+.-.-|+..+.... .+...+++||||||++.+.. . ..
T Consensus 395 ~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~--~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~ 472 (820)
T PRK07246 395 SSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK--DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKA 472 (820)
T ss_pred CCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc--CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHH
Confidence 1226789998877777664432 35678999999999865311 0 00
Q ss_pred ---------------------------------------------HHHHH--------HHh-------------------
Q 007481 164 ---------------------------------------------EIHEL--------VRL------------------- 171 (602)
Q Consensus 164 ---------------------------------------------~i~~i--------~~~------------------- 171 (602)
.+..+ ...
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~ 552 (820)
T PRK07246 473 LSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKR 552 (820)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcc
Confidence 00000 000
Q ss_pred -----------------CCCCcceeeeeccCC--hhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeee----echhh--
Q 007481 172 -----------------CPKRRQTMLFSATLT--EDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVR----IRRMR-- 226 (602)
Q Consensus 172 -----------------~~~~~q~il~SAT~~--~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~----~~~~~-- 226 (602)
++....+|++|||++ +.......+++............ . .+..+. ++...
T Consensus 553 ~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~-~----~~~~~~i~~~~p~~~~~ 627 (820)
T PRK07246 553 VTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDK-K----QDQLVVVDQDMPLVTET 627 (820)
T ss_pred eeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCcHHHHcCCCccceecCCCCh-H----HccEEEeCCCCCCCCCC
Confidence 011135789999995 33331122333322221111110 0 011111 11100
Q ss_pred -hhhH----HHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC
Q 007481 227 -EVNQ----EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301 (602)
Q Consensus 227 -~~~k----~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~ 301 (602)
.... ...+..++ ..+++++|+++|....+.++..|....+.+ ...|... .+..+++.|+.++-.||++|+
T Consensus 628 ~~~~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~ 702 (820)
T PRK07246 628 SDEVYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLG 702 (820)
T ss_pred ChHHHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecc
Confidence 1111 11222333 346899999999999999999987654444 3434222 256689999998889999999
Q ss_pred ccccccCcCC--ccEEEEcCCCC------------------------------ChhhHHHHhhhcccCCCcceEEEEEec
Q 007481 302 VAARGLDIIG--VQTVINYACPR------------------------------DLTSYVHRVGRTARAGREGYAVTFVTD 349 (602)
Q Consensus 302 ~~~~GlDip~--v~~VI~~d~p~------------------------------s~~~yiQriGRa~R~g~~g~~i~l~~~ 349 (602)
.+.+|+|+|+ ...||+..+|. -...+.|.+||.-|...+--+++++++
T Consensus 703 sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~ 782 (820)
T PRK07246 703 SFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDR 782 (820)
T ss_pred hhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECC
Confidence 9999999973 55667666553 123346999999995543224444554
Q ss_pred C--cHHHHHHHHHH
Q 007481 350 N--DRSLLKAIAKR 361 (602)
Q Consensus 350 ~--d~~~l~~i~~~ 361 (602)
. +..+-+.+.+.
T Consensus 783 R~~~k~Yg~~~l~s 796 (820)
T PRK07246 783 RILTKSYGKQILAS 796 (820)
T ss_pred cccccHHHHHHHHh
Confidence 3 33344444443
No 130
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=9.7e-18 Score=177.35 Aligned_cols=306 Identities=19% Similarity=0.181 Sum_probs=191.6
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEE
Q 007481 24 IQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV 103 (602)
Q Consensus 24 ~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~ 103 (602)
.+.+.+..+-.++-+||.+.||||||.. +|-+ |+...-. ...-+-+--|.|..|..++..+..- .+..++.-
T Consensus 360 ~R~~ll~~ir~n~vvvivgETGSGKTTQ--l~Qy--L~edGY~-~~GmIGcTQPRRvAAiSVAkrVa~E---M~~~lG~~ 431 (1042)
T KOG0924|consen 360 CRDQLLSVIRENQVVVIVGETGSGKTTQ--LAQY--LYEDGYA-DNGMIGCTQPRRVAAISVAKRVAEE---MGVTLGDT 431 (1042)
T ss_pred HHHHHHHHHhhCcEEEEEecCCCCchhh--hHHH--HHhcccc-cCCeeeecCchHHHHHHHHHHHHHH---hCCccccc
Confidence 3444445555577788999999999974 4432 2221111 2224677789999998887665432 22222222
Q ss_pred ECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccc-cccCCcHHHHHHHHHhCCCCcceeeee
Q 007481 104 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR-LLELGFSAEIHELVRLCPKRRQTMLFS 182 (602)
Q Consensus 104 ~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~-l~~~gf~~~i~~i~~~~~~~~q~il~S 182 (602)
+|= +.. .+..-.....|-++|.|.|+.-... .-.|..+++||+||||. -++....-.+....-.-..+..+|.+|
T Consensus 432 VGY-sIR-FEdvT~~~T~IkymTDGiLLrEsL~--d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtS 507 (1042)
T KOG0924|consen 432 VGY-SIR-FEDVTSEDTKIKYMTDGILLRESLK--DRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTS 507 (1042)
T ss_pred cce-EEE-eeecCCCceeEEEeccchHHHHHhh--hhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEee
Confidence 220 000 0111123456889999999876543 34688899999999995 444433333333333344578899999
Q ss_pred ccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhh---hcCCCeEEEEeCcHHHHHHH
Q 007481 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS---KTFTSKVIIFSGTKQAAHRL 259 (602)
Q Consensus 183 AT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~---~~~~~kvIIF~~s~~~a~~l 259 (602)
|||.. +.+...+-+.|........ +.-.........+..-...+...+. ....+-+|||....+..+..
T Consensus 508 ATm~a--~kf~nfFgn~p~f~IpGRT------yPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t 579 (1042)
T KOG0924|consen 508 ATMDA--QKFSNFFGNCPQFTIPGRT------YPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECT 579 (1042)
T ss_pred ccccH--HHHHHHhCCCceeeecCCc------cceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHH
Confidence 99963 3444444445543322111 1111111111111111222222222 33457899999876655444
Q ss_pred ----HHHHhhc------CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcC----------
Q 007481 260 ----KILFGLA------ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA---------- 319 (602)
Q Consensus 260 ----~~~L~~~------g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d---------- 319 (602)
...|.+. ++.+..+++.+++.-+.++.+.-..|.-+++|||++++..|-||++.+||..+
T Consensus 580 ~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~ 659 (1042)
T KOG0924|consen 580 CDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPR 659 (1042)
T ss_pred HHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccc
Confidence 4444332 57788999999999999999988889999999999999999999999999633
Q ss_pred --------CCCChhhHHHHhhhcccCCCcceEEEEEecC
Q 007481 320 --------CPRDLTSYVHRVGRTARAGREGYAVTFVTDN 350 (602)
Q Consensus 320 --------~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~ 350 (602)
.|-|-..--||.|||||. .+|.||-+++..
T Consensus 660 ~G~D~L~~~pIS~AnA~QRaGRAGRt-~pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 660 IGMDALQIVPISQANADQRAGRAGRT-GPGTCYRLYTED 697 (1042)
T ss_pred cccceeEEEechhccchhhccccCCC-CCcceeeehhhh
Confidence 244777778999999995 499999999874
No 131
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.78 E-value=3e-16 Score=174.90 Aligned_cols=323 Identities=22% Similarity=0.206 Sum_probs=209.3
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 15 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 15 ~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
.+|+. |++.|--..- .-.+.-|+.+.||.|||+++.+|+.-..+. |..|-|++++..||.+-++++..+..
T Consensus 72 ~lG~r-~ydvQlig~l--~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~------G~~VhVvT~NdyLA~RD~e~m~pvy~ 142 (870)
T CHL00122 72 TLGLR-HFDVQLIGGL--VLNDGKIAEMKTGEGKTLVATLPAYLNALT------GKGVHIVTVNDYLAKRDQEWMGQIYR 142 (870)
T ss_pred HhCCC-CCchHhhhhH--hhcCCccccccCCCCchHHHHHHHHHHHhc------CCceEEEeCCHHHHHHHHHHHHHHHH
Confidence 44654 7777766543 334668899999999999999998654443 33489999999999999999999999
Q ss_pred cCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHH-HHHHHccCCC-----CCCCcceEEEeCccccc-cC--------
Q 007481 95 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSV-----DLDDLAVLILDEADRLL-EL-------- 159 (602)
Q Consensus 95 ~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L-~~~l~~~~~~-----~l~~l~llVlDEah~l~-~~-------- 159 (602)
+.|++|+++.++.+....... ..+||+.+|...| .|+|+..... -...+.+.||||+|.++ +.
T Consensus 143 ~LGLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiIS 220 (870)
T CHL00122 143 FLGLTVGLIQEGMSSEERKKN--YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIIS 220 (870)
T ss_pred HcCCceeeeCCCCChHHHHHh--cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceecc
Confidence 999999999888776544333 4579999997655 4555543221 24567899999999732 10
Q ss_pred C-------cH--------------------------------HHHHHH-----------------HHhC------C----
Q 007481 160 G-------FS--------------------------------AEIHEL-----------------VRLC------P---- 173 (602)
Q Consensus 160 g-------f~--------------------------------~~i~~i-----------------~~~~------~---- 173 (602)
| .. ..+..+ ...+ .
T Consensus 221 g~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~d 300 (870)
T CHL00122 221 GQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVH 300 (870)
T ss_pred CCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCc
Confidence 0 00 000000 0000 0
Q ss_pred ---------------------------------------------------------CCcceeeeeccCChhHHHHHHHh
Q 007481 174 ---------------------------------------------------------KRRQTMLFSATLTEDVDELIKLS 196 (602)
Q Consensus 174 ---------------------------------------------------------~~~q~il~SAT~~~~~~~l~~~~ 196 (602)
.-..+.+||+|......++...+
T Consensus 301 YiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY 380 (870)
T CHL00122 301 YIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIY 380 (870)
T ss_pred EEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHh
Confidence 00145677888766555554444
Q ss_pred cCCCeEEecCCCCCCCCCceeeeeeechhhhhhHH-HHHHHHhh-hcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeecc
Q 007481 197 LTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE-AVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELH 274 (602)
Q Consensus 197 l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~-~~l~~l~~-~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lh 274 (602)
-...+.+... .|....+.-..+.. ....+. .++..+.. ...+.||||.|.|....+.++..|...|++..+|+
T Consensus 381 ~l~vv~IPtn----kp~~R~d~~d~v~~-t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLN 455 (870)
T CHL00122 381 NLEVVCIPTH----RPMLRKDLPDLIYK-DELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLN 455 (870)
T ss_pred CCCEEECCCC----CCccceeCCCeEEe-CHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceee
Confidence 3332222111 12111111111111 112222 23333333 24477999999999999999999999999999999
Q ss_pred CCCCHHHHH-HHHHHHhcC-CceEEEEcCccccccCcC---Cc-------------------------------------
Q 007481 275 GNLTQAQRL-EALELFRKQ-HVDFLIATDVAARGLDII---GV------------------------------------- 312 (602)
Q Consensus 275 g~~~~~eR~-~il~~F~~g-~~~iLVaT~~~~~GlDip---~v------------------------------------- 312 (602)
..-.+.+++ +++.. .| .-.|.|||++++||.||. +.
T Consensus 456 Ak~~~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (870)
T CHL00122 456 AKPENVRRESEIVAQ--AGRKGSITIATNMAGRGTDIILGGNPEFKLKKELYDLLLSYKSNEKISTISQNFLNILNSLKN 533 (870)
T ss_pred CCCccchhHHHHHHh--cCCCCcEEEeccccCCCcCeecCCchhHHHHHHHhhhhcccccccccccccccchhhhhhccc
Confidence 863222333 33332 34 456889999999999982 20
Q ss_pred ------------------------------------------------------------cEEEEcCCCCChhhHHHHhh
Q 007481 313 ------------------------------------------------------------QTVINYACPRDLTSYVHRVG 332 (602)
Q Consensus 313 ------------------------------------------------------------~~VI~~d~p~s~~~yiQriG 332 (602)
-+||-.....|...--|-.|
T Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~V~~~GGL~VIgTErheSrRIDnQLrG 613 (870)
T CHL00122 534 DLKFLSLSDFENLKILNEASEISIPKNSYQLSLRFLYNELLEKYKKLQEKEKKIVKKLGGLYVIGTERHESRRIDNQLRG 613 (870)
T ss_pred chhhhcccccccccccccccccccccchhhhhhhhHHHHHHHHHHHHhhhhHHHHHHcCCCEEEecCcCchHHHHHHHhc
Confidence 13555555567788889999
Q ss_pred hcccCCCcceEEEEEecCcHHHH
Q 007481 333 RTARAGREGYAVTFVTDNDRSLL 355 (602)
Q Consensus 333 Ra~R~g~~g~~i~l~~~~d~~~l 355 (602)
|+||.|.+|.+-.|++-.|.-+.
T Consensus 614 RaGRQGDPG~s~f~lSLED~l~~ 636 (870)
T CHL00122 614 RAGRQGDPGSSRFFLSLEDNLLR 636 (870)
T ss_pred cccCCCCCCcceEEEEeccHHHH
Confidence 99999999999999998775443
No 132
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=1.1e-17 Score=179.65 Aligned_cols=305 Identities=19% Similarity=0.212 Sum_probs=187.0
Q ss_pred HHHHHhcCCCEEEEcCCCchHHHHHHHHHH-HHHHcCCCC-CCCcEEEEEcChHHHHHHHHHHHH-HHhhcCCceE--EE
Q 007481 28 CIPLALTGRDICGSAITGSGKTAAFALPTL-ERLLYRPKR-IPAIRVLILTPTRELAVQVHSMIE-KIAQFTDIRC--CL 102 (602)
Q Consensus 28 ~i~~~l~g~dvii~a~TGSGKT~a~~l~il-~~l~~~~~~-~~~~~vLiL~Ptr~La~Q~~~~~~-~l~~~~~i~v--~~ 102 (602)
+..+|..+--+||||.||||||+ ++|-+ ....+.... ..+.-+=|--|.|..|.-++..+. .++. .+-.| .+
T Consensus 264 IMEaIn~n~vvIIcGeTGsGKTT--QvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~eVsYqI 340 (1172)
T KOG0926|consen 264 IMEAINENPVVIICGETGSGKTT--QVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSEVSYQI 340 (1172)
T ss_pred HHHHhhcCCeEEEecCCCCCccc--cchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-CccceeEEE
Confidence 34445556667899999999997 46643 222222221 123357788899988876665543 3333 23223 22
Q ss_pred EECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccc-ccCC----cHHHHHHHHHhCC----
Q 007481 103 VVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL-LELG----FSAEIHELVRLCP---- 173 (602)
Q Consensus 103 ~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l-~~~g----f~~~i~~i~~~~~---- 173 (602)
-+.+. ......|-++|.|.|+.-+.+ +|-|..+++|||||||.= ++.. ....+-.+.....
T Consensus 341 Rfd~t--------i~e~T~IkFMTDGVLLrEi~~--DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~ 410 (1172)
T KOG0926|consen 341 RFDGT--------IGEDTSIKFMTDGVLLREIEN--DFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQC 410 (1172)
T ss_pred Eeccc--------cCCCceeEEecchHHHHHHHH--hHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhc
Confidence 22221 235568999999999999987 577899999999999952 2211 1122212211111
Q ss_pred --CCcceeeeeccCChh-HHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeech-hhhhhHHHHHHHHhhhcCCCeEEEE
Q 007481 174 --KRRQTMLFSATLTED-VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR-MREVNQEAVLLSLCSKTFTSKVIIF 249 (602)
Q Consensus 174 --~~~q~il~SAT~~~~-~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~k~~~l~~l~~~~~~~kvIIF 249 (602)
....+|.||||+--+ .-+...++-..|-.+.++..... +.-+|-.-.+ ..-.....-.+.+....+.+.+|||
T Consensus 411 ~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfP---VsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVF 487 (1172)
T KOG0926|consen 411 QIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFP---VSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVF 487 (1172)
T ss_pred ccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCc---eEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEE
Confidence 245789999998522 11122233333333333322211 1111110000 0001111223445567788999999
Q ss_pred eCcHHHHHHHHHHHhhc-----C---------------------------------------------------------
Q 007481 250 SGTKQAAHRLKILFGLA-----A--------------------------------------------------------- 267 (602)
Q Consensus 250 ~~s~~~a~~l~~~L~~~-----g--------------------------------------------------------- 267 (602)
+.....+..|...|+.. +
T Consensus 488 vTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa 567 (1172)
T KOG0926|consen 488 VTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAA 567 (1172)
T ss_pred EeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhh
Confidence 99999998887666432 0
Q ss_pred -------------------------------------CceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcC
Q 007481 268 -------------------------------------LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 310 (602)
Q Consensus 268 -------------------------------------~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip 310 (602)
+-|..|++-++...+.++.+.--.|.--++|||++++..|-||
T Consensus 568 ~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIP 647 (1172)
T KOG0926|consen 568 FNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIP 647 (1172)
T ss_pred hhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccC
Confidence 0145566677777778887777788888999999999999999
Q ss_pred CccEEEE--------cCCCC----------ChhhHHHHhhhcccCCCcceEEEEEec
Q 007481 311 GVQTVIN--------YACPR----------DLTSYVHRVGRTARAGREGYAVTFVTD 349 (602)
Q Consensus 311 ~v~~VI~--------~d~p~----------s~~~yiQriGRa~R~g~~g~~i~l~~~ 349 (602)
++.+||. ||--. |-.+--||.|||||.| .|.||-|++.
T Consensus 648 gIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 648 GIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred CeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 9999995 44333 4455569999999975 8999999875
No 133
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.76 E-value=3.9e-17 Score=178.78 Aligned_cols=160 Identities=19% Similarity=0.168 Sum_probs=111.7
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhc-CCc
Q 007481 20 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDI 98 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~-~~i 98 (602)
.|-.||.+.+...=.++..+|.|||.+|||.+- .-.++..+..... .-||+++||.+|+.|+...+...... +-.
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfis-fY~iEKVLResD~---~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFIS-FYAIEKVLRESDS---DVVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceecc-HHHHHHHHhhcCC---CEEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 488999999999999999999999999999763 4445555554322 24899999999999987666543322 222
Q ss_pred eEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHcc--CCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCCCc
Q 007481 99 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS--MSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 176 (602)
Q Consensus 99 ~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~--~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~ 176 (602)
....+.|......+.. .-.++|+|+-|+.+-..|... ..-....++++|+||+|.+-+..-...+++++-+.+ +
T Consensus 587 rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~--C 662 (1330)
T KOG0949|consen 587 RGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIP--C 662 (1330)
T ss_pred cchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcC--C
Confidence 3334444443332221 235799999999998877652 122467899999999999887654445555555543 5
Q ss_pred ceeeeeccCCh
Q 007481 177 QTMLFSATLTE 187 (602)
Q Consensus 177 q~il~SAT~~~ 187 (602)
.++.+|||+.+
T Consensus 663 P~L~LSATigN 673 (1330)
T KOG0949|consen 663 PFLVLSATIGN 673 (1330)
T ss_pred CeeEEecccCC
Confidence 58999999864
No 134
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.76 E-value=1.5e-16 Score=163.34 Aligned_cols=317 Identities=16% Similarity=0.197 Sum_probs=210.0
Q ss_pred CCCcHHHHHHHHHHhc-CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCC
Q 007481 19 SKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 97 (602)
Q Consensus 19 ~~pt~~Q~~~i~~~l~-g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~ 97 (602)
..+-|+|.+.+..++. |..+++...+|.|||+.++ .+...+ +..+ ..||+||...+ .-|.+.+..|.....
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAl-aIA~yy--raEw----plliVcPAsvr-ftWa~al~r~lps~~ 268 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQAL-AIARYY--RAEW----PLLIVCPASVR-FTWAKALNRFLPSIH 268 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHH-HHHHHH--hhcC----cEEEEecHHHh-HHHHHHHHHhccccc
Confidence 4568999999988876 7889999999999998753 333222 2222 48999998755 447888887765432
Q ss_pred ceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcc
Q 007481 98 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 177 (602)
Q Consensus 98 i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q 177 (602)
- +.++.++.+.. ..+-..+.|.|.+++.+.. +.+ .+.-..+.+||+||+|++.+.. ......++..+....+
T Consensus 269 p-i~vv~~~~D~~---~~~~t~~~v~ivSye~ls~-l~~--~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~akh 340 (689)
T KOG1000|consen 269 P-IFVVDKSSDPL---PDVCTSNTVAIVSYEQLSL-LHD--ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAKH 340 (689)
T ss_pred c-eEEEecccCCc---cccccCCeEEEEEHHHHHH-HHH--HHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhhh
Confidence 2 44555543321 1123445788888887643 332 2334558899999999887653 3445666666666678
Q ss_pred eeeeeccCC-------------------hhHHHHHHHhcCC-CeEEecCCCC--------------------------CC
Q 007481 178 TMLFSATLT-------------------EDVDELIKLSLTK-PLRLSADPSA--------------------------KR 211 (602)
Q Consensus 178 ~il~SAT~~-------------------~~~~~l~~~~l~~-p~~~~~~~~~--------------------------~~ 211 (602)
+|++|+||. ++..++...+|.- .+.+..+... ..
T Consensus 341 vILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qL 420 (689)
T KOG1000|consen 341 VILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQL 420 (689)
T ss_pred eEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 899999983 2223333333322 1111111110 11
Q ss_pred CCCceeeeeeechhh---------------------hhh--------------HHH-HHHHHh-----hhcCCCeEEEEe
Q 007481 212 PSTLTEEVVRIRRMR---------------------EVN--------------QEA-VLLSLC-----SKTFTSKVIIFS 250 (602)
Q Consensus 212 ~~~l~~~~~~~~~~~---------------------~~~--------------k~~-~l~~l~-----~~~~~~kvIIF~ 250 (602)
|+. .+.++.+.... +.. +.. +...++ ....+.+++||+
T Consensus 421 PpK-rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFa 499 (689)
T KOG1000|consen 421 PPK-RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFA 499 (689)
T ss_pred Ccc-ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEe
Confidence 111 12222211100 000 000 111111 123456999999
Q ss_pred CcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC-CceE-EEEcCccccccCcCCccEEEEcCCCCChhhHH
Q 007481 251 GTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ-HVDF-LIATDVAARGLDIIGVQTVINYACPRDLTSYV 328 (602)
Q Consensus 251 ~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g-~~~i-LVaT~~~~~GlDip~v~~VI~~d~p~s~~~yi 328 (602)
......+.+..++...++....+.|.++..+|....+.|+.. ++.| +++..+++.||++...+.||...++||+--.+
T Consensus 500 HH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLl 579 (689)
T KOG1000|consen 500 HHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLL 579 (689)
T ss_pred hhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEE
Confidence 999999999999999999999999999999999999999965 5555 56778899999999999999999999999999
Q ss_pred HHhhhcccCCCcce--EEEEEecCcH
Q 007481 329 HRVGRTARAGREGY--AVTFVTDNDR 352 (602)
Q Consensus 329 QriGRa~R~g~~g~--~i~l~~~~d~ 352 (602)
|.-.|++|.|+... ++.|+..++.
T Consensus 580 QAEDRaHRiGQkssV~v~ylvAKgT~ 605 (689)
T KOG1000|consen 580 QAEDRAHRIGQKSSVFVQYLVAKGTA 605 (689)
T ss_pred echhhhhhccccceeeEEEEEecCch
Confidence 99999999997643 4455666543
No 135
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.74 E-value=2.1e-16 Score=167.62 Aligned_cols=114 Identities=16% Similarity=0.253 Sum_probs=102.6
Q ss_pred hcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCc-eEEEEcCccccccCcCCccEEEEc
Q 007481 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV-DFLIATDVAARGLDIIGVQTVINY 318 (602)
Q Consensus 240 ~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~-~iLVaT~~~~~GlDip~v~~VI~~ 318 (602)
...++++|+|+...++.+.+.++|...+++...|.|+..-.+|..++.+|...++ -+|++|.+++.|||+..+++||.|
T Consensus 1041 kaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFY 1120 (1185)
T KOG0388|consen 1041 KAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFY 1120 (1185)
T ss_pred hcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEe
Confidence 3457899999999999999999999999999999999999999999999998644 568999999999999999999999
Q ss_pred CCCCChhhHHHHhhhcccCCCc--ceEEEEEecCcHH
Q 007481 319 ACPRDLTSYVHRVGRTARAGRE--GYAVTFVTDNDRS 353 (602)
Q Consensus 319 d~p~s~~~yiQriGRa~R~g~~--g~~i~l~~~~d~~ 353 (602)
|..|++..-.|.+.||+|.|.. -.+|-|+..++.+
T Consensus 1121 dSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvE 1157 (1185)
T KOG0388|consen 1121 DSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVE 1157 (1185)
T ss_pred cCCCCcchhhHHHHHHHhccCccceeeeeecccccHH
Confidence 9999999999999999998854 5677777776543
No 136
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=1.7e-14 Score=160.70 Aligned_cols=130 Identities=23% Similarity=0.263 Sum_probs=98.3
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhc
Q 007481 16 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 95 (602)
Q Consensus 16 ~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~ 95 (602)
+|. .|++.|--.--.+ ...-|+.+.||-|||+++.+|+.-..+.. ..|-||+++..||..-++++..+..+
T Consensus 82 lG~-r~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL~G------kgVhVVTvNdYLA~RDae~m~~vy~~ 152 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNALTG------KGVHVVTVNDYLARRDAEWMGQVHRF 152 (939)
T ss_pred hCC-CcchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhhcC------CCeEEEeCCHHHHHhHHHHHHHHHHH
Confidence 353 3666665444444 45678999999999999999988665543 34899999999999999999999999
Q ss_pred CCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHH-HHHHHccC-----CCCCCCcceEEEeCcccc
Q 007481 96 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLDDLAVLILDEADRL 156 (602)
Q Consensus 96 ~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L-~~~l~~~~-----~~~l~~l~llVlDEah~l 156 (602)
.|++|+++.++.+..... ....+||+.+|+..| .|+|+.+. ......+.+.||||+|.+
T Consensus 153 LGLtvg~i~~~~~~~err--~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 153 LGLSVGLIQQDMSPEERK--KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred hCCeEEEECCCCChHHHH--HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccce
Confidence 999999998877654333 445789999998887 44444321 123567889999999974
No 137
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.71 E-value=2.4e-17 Score=134.37 Aligned_cols=78 Identities=33% Similarity=0.599 Sum_probs=75.4
Q ss_pred HHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCC
Q 007481 261 ILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 338 (602)
Q Consensus 261 ~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g 338 (602)
.+|...++.+..+||++++.+|..+++.|+++...|||||+++++|+|+|.+++||++++|+|+..|+|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367889999999999999999999999999999999999999999999999999999999999999999999999976
No 138
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.71 E-value=7.9e-17 Score=144.42 Aligned_cols=117 Identities=39% Similarity=0.603 Sum_probs=105.9
Q ss_pred HHHHHHHHhhhc--CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcccccc
Q 007481 230 QEAVLLSLCSKT--FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 307 (602)
Q Consensus 230 k~~~l~~l~~~~--~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~Gl 307 (602)
+...+..++... .++++||||++...++.+...|...+..+..+||+++..+|..++..|.+|...+|++|+++++|+
T Consensus 13 k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~ 92 (131)
T cd00079 13 KLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGI 92 (131)
T ss_pred HHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCc
Confidence 344444444433 478999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEE
Q 007481 308 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 346 (602)
Q Consensus 308 Dip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l 346 (602)
|+|++++||++++|++...|+|++||++|.|..|.++++
T Consensus 93 d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 93 DLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred ChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999988888764
No 139
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.70 E-value=4.6e-16 Score=161.68 Aligned_cols=342 Identities=13% Similarity=0.070 Sum_probs=230.0
Q ss_pred HHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHH
Q 007481 13 CEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 92 (602)
Q Consensus 13 l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l 92 (602)
+..+.-.....+|.++|..+-+|+++++.-.|.+||.+++.+.....+..- +....+++.|+.+++....+.+.-.
T Consensus 279 ~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~----~~s~~~~~~~~~~~~~~~~~~~~V~ 354 (1034)
T KOG4150|consen 279 LNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC----HATNSLLPSEMVEHLRNGSKGQVVH 354 (1034)
T ss_pred HhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC----cccceecchhHHHHhhccCCceEEE
Confidence 345556677899999999999999999999999999999887776655543 3445899999999976433221110
Q ss_pred hhc---CCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHH-ccCCC--CCCCcceEEEeCccccccCC---cHH
Q 007481 93 AQF---TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR-NSMSV--DLDDLAVLILDEADRLLELG---FSA 163 (602)
Q Consensus 93 ~~~---~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~-~~~~~--~l~~l~llVlDEah~l~~~g---f~~ 163 (602)
... ..--++-.+.+.+........+.+.+++++.|........ +...+ .+-...++++||+|..+... ...
T Consensus 355 ~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~ 434 (1034)
T KOG4150|consen 355 VEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQD 434 (1034)
T ss_pred EEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHH
Confidence 000 0112334455566666666677889999999988766443 32211 23345678999999866431 234
Q ss_pred HHHHHHHhC-----CCCcceeeeeccCChhHHHHHHHhcCCCe-EEecCCCCCCCCCceeeeeeechh---hhhhHH---
Q 007481 164 EIHELVRLC-----PKRRQTMLFSATLTEDVDELIKLSLTKPL-RLSADPSAKRPSTLTEEVVRIRRM---REVNQE--- 231 (602)
Q Consensus 164 ~i~~i~~~~-----~~~~q~il~SAT~~~~~~~l~~~~l~~p~-~~~~~~~~~~~~~l~~~~~~~~~~---~~~~k~--- 231 (602)
.+..+++.+ ..+.|++-.|||....+.-....+--+-+ .+..+ ..|.+-.+.+++.++. .+..+.
T Consensus 435 ~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~D---GSPs~~K~~V~WNP~~~P~~~~~~~~~i 511 (1034)
T KOG4150|consen 435 QLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTID---GSPSSEKLFVLWNPSAPPTSKSEKSSKV 511 (1034)
T ss_pred HHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEec---CCCCccceEEEeCCCCCCcchhhhhhHH
Confidence 455555444 34678899999987666554444322222 22222 2344444445554321 111111
Q ss_pred ----HHHHHHhhhcCCCeEEEEeCcHHHHHHHHHH----HhhcCC----ceeeccCCCCHHHHHHHHHHHhcCCceEEEE
Q 007481 232 ----AVLLSLCSKTFTSKVIIFSGTKQAAHRLKIL----FGLAAL----KAAELHGNLTQAQRLEALELFRKQHVDFLIA 299 (602)
Q Consensus 232 ----~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~----L~~~g~----~~~~lhg~~~~~eR~~il~~F~~g~~~iLVa 299 (602)
.++..++ ..+-++|.||.+++.|+.+... |.+.+- .+..+.|+.+.++|..+..+.-.|++.-+|+
T Consensus 512 ~E~s~~~~~~i--~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIa 589 (1034)
T KOG4150|consen 512 VEVSHLFAEMV--QHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIA 589 (1034)
T ss_pred HHHHHHHHHHH--HcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEe
Confidence 1222222 2356999999999999977433 333332 2445679999999999999999999999999
Q ss_pred cCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecC--cHHHHHHHHHHhc
Q 007481 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN--DRSLLKAIAKRAG 363 (602)
Q Consensus 300 T~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~--d~~~l~~i~~~~~ 363 (602)
|++++.||||.+++.|++.++|.|...+.|..||+||.+++..++.++... |..++..-....+
T Consensus 590 TNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~ 655 (1034)
T KOG4150|consen 590 TNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFG 655 (1034)
T ss_pred cchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhC
Confidence 999999999999999999999999999999999999998887777766544 5444443333333
No 140
>COG4889 Predicted helicase [General function prediction only]
Probab=99.70 E-value=8.4e-17 Score=174.04 Aligned_cols=319 Identities=20% Similarity=0.241 Sum_probs=184.1
Q ss_pred CCCCCcHHHHHHHHHHhcC----CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHH
Q 007481 17 GYSKPTPIQAACIPLALTG----RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 92 (602)
Q Consensus 17 g~~~pt~~Q~~~i~~~l~g----~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l 92 (602)
.-..|+|+|+.||..++.| ...=+.+.||+|||... |-+.+.+.. .++|+|+|+..|..|..+.+..-
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTs-LkisEala~-------~~iL~LvPSIsLLsQTlrew~~~ 229 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTS-LKISEALAA-------ARILFLVPSISLLSQTLREWTAQ 229 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchH-HHHHHHHhh-------hheEeecchHHHHHHHHHHHhhc
Confidence 4568999999999999875 23446677999999875 666666643 46999999999988875544432
Q ss_pred hhcCCceEEEEECCCCHH-----------------------HHH--HHHcCCCcEEEECcHHHHHHHHccCCCCCCCcce
Q 007481 93 AQFTDIRCCLVVGGLSTK-----------------------MQE--TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAV 147 (602)
Q Consensus 93 ~~~~~i~v~~~~g~~~~~-----------------------~~~--~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~l 147 (602)
. ..+++...++++.... ..+ ..-..+--||++|++.+...-.. ....+..+++
T Consensus 230 ~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA-Qe~G~~~fDl 307 (1518)
T COG4889 230 K-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA-QEAGLDEFDL 307 (1518)
T ss_pred c-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH-HHcCCCCccE
Confidence 1 1344444444432100 001 11123346899999988765443 2356788999
Q ss_pred EEEeCccccccCCcH-HHHHHHHHhCC-----CCcceeeeeccCCh---hHHHHHH------------------------
Q 007481 148 LILDEADRLLELGFS-AEIHELVRLCP-----KRRQTMLFSATLTE---DVDELIK------------------------ 194 (602)
Q Consensus 148 lVlDEah~l~~~gf~-~~i~~i~~~~~-----~~~q~il~SAT~~~---~~~~l~~------------------------ 194 (602)
||+||||+....... +.-..+ ..++ +....++|||||.- ....-++
T Consensus 308 iicDEAHRTtGa~~a~dd~saF-t~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~F 386 (1518)
T COG4889 308 IICDEAHRTTGATLAGDDKSAF-TRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGF 386 (1518)
T ss_pred EEecchhccccceecccCcccc-eeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccH
Confidence 999999985432211 111111 1111 12345899999841 1111110
Q ss_pred ------HhcCC--CeEEecCCCCCCCCCceeeeeeechhhhhhHH----HHHHHHhhh--------------cCCCeEEE
Q 007481 195 ------LSLTK--PLRLSADPSAKRPSTLTEEVVRIRRMREVNQE----AVLLSLCSK--------------TFTSKVII 248 (602)
Q Consensus 195 ------~~l~~--p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~----~~l~~l~~~--------------~~~~kvII 248 (602)
..+.+ .+.+.++... ....+.............+.. ..-.-+..+ .+-.+.|-
T Consensus 387 geAv~rdlLTDYKVmvlaVd~~~-i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIa 465 (1518)
T COG4889 387 GEAVERDLLTDYKVMVLAVDKEV-IAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIA 465 (1518)
T ss_pred HHHHHhhhhccceEEEEEechhh-hhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHH
Confidence 00000 0111111100 000000000000000000000 000011111 11147889
Q ss_pred EeCcHHHHHHHHHHHhh-------------cC--CceeeccCCCCHHHHHHHHHH---HhcCCceEEEEcCccccccCcC
Q 007481 249 FSGTKQAAHRLKILFGL-------------AA--LKAAELHGNLTQAQRLEALEL---FRKQHVDFLIATDVAARGLDII 310 (602)
Q Consensus 249 F~~s~~~a~~l~~~L~~-------------~g--~~~~~lhg~~~~~eR~~il~~---F~~g~~~iLVaT~~~~~GlDip 310 (602)
||.++++...+++.|.. .+ +.+..+.|.|+-.+|...+.. |...+++||--...+++|+|+|
T Consensus 466 F~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVP 545 (1518)
T COG4889 466 FAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVP 545 (1518)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCcc
Confidence 99998888777655531 23 345566799999999665553 4556888888889999999999
Q ss_pred CccEEEEcCCCCChhhHHHHhhhcccC--CC-cceEEEEE
Q 007481 311 GVQTVINYACPRDLTSYVHRVGRTARA--GR-EGYAVTFV 347 (602)
Q Consensus 311 ~v~~VI~~d~p~s~~~yiQriGRa~R~--g~-~g~~i~l~ 347 (602)
.++.||.|++-.+....+|.+||..|. |+ -|+.|+=+
T Consensus 546 aLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 546 ALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred ccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 999999999999999999999999993 32 36555543
No 141
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.70 E-value=8.2e-16 Score=138.53 Aligned_cols=144 Identities=45% Similarity=0.570 Sum_probs=111.9
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHH
Q 007481 36 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~ 115 (602)
+++++.+|||+|||.+++..+...+... ...+++|++|+..++.|+.+.+..+... ++.+..+.+..........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~----~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 75 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL----KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKL 75 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc----cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHH
Confidence 4789999999999998766666655431 2346999999999999999998887665 6778888888776666666
Q ss_pred HcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeeccC
Q 007481 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 185 (602)
Q Consensus 116 l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SAT~ 185 (602)
.....+|+++|++.+...+.... .....++++||||+|.+....+...............+++++||||
T Consensus 76 ~~~~~~i~i~t~~~~~~~~~~~~-~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 76 LSGKTDIVVGTPGRLLDELERLK-LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred hcCCCCEEEECcHHHHHHHHcCC-cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 67789999999999988776642 3456788999999999887655444323344456778899999997
No 142
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.69 E-value=1.8e-14 Score=159.24 Aligned_cols=80 Identities=15% Similarity=0.134 Sum_probs=61.8
Q ss_pred cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC----CceEEEEcCccccccCc-------
Q 007481 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ----HVDFLIATDVAARGLDI------- 309 (602)
Q Consensus 241 ~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g----~~~iLVaT~~~~~GlDi------- 309 (602)
..+++++|.+.|...++.++..|...---...+.|+.+ .+..+++.|+.. .-.||++|+.+.+|+|+
T Consensus 468 ~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p 545 (636)
T TIGR03117 468 KAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSP 545 (636)
T ss_pred HcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCC
Confidence 34679999999999999999988653223345556443 346688999974 78999999999999999
Q ss_pred -CC--ccEEEEcCCCC
Q 007481 310 -IG--VQTVINYACPR 322 (602)
Q Consensus 310 -p~--v~~VI~~d~p~ 322 (602)
|+ +++||+..+|.
T Consensus 546 ~~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 546 DKDNLLTDLIITCAPF 561 (636)
T ss_pred CCCCcccEEEEEeCCC
Confidence 33 88999887774
No 143
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.69 E-value=2.7e-15 Score=166.11 Aligned_cols=112 Identities=21% Similarity=0.325 Sum_probs=100.6
Q ss_pred hcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC--CceEEEEcCccccccCcCCccEEEE
Q 007481 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ--HVDFLIATDVAARGLDIIGVQTVIN 317 (602)
Q Consensus 240 ~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g--~~~iLVaT~~~~~GlDip~v~~VI~ 317 (602)
...++++|||+...++.+.|..+|.-.|+-...|.|....++|...+++|+.. -+.+|++|...+.|||+-++++||+
T Consensus 1273 k~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvF 1352 (1958)
T KOG0391|consen 1273 KSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVF 1352 (1958)
T ss_pred HhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEE
Confidence 45678999999999999999999999999999999999999999999999976 4567899999999999999999999
Q ss_pred cCCCCChhhHHHHhhhcccCCCcce--EEEEEecCc
Q 007481 318 YACPRDLTSYVHRVGRTARAGREGY--AVTFVTDND 351 (602)
Q Consensus 318 ~d~p~s~~~yiQriGRa~R~g~~g~--~i~l~~~~d 351 (602)
||..||+.--.|...|++|.|+.-. .|-|+++.+
T Consensus 1353 YDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1353 YDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERT 1388 (1958)
T ss_pred ecCCCCchhhhHHHHHHHhhcCccceEEEEeeccch
Confidence 9999999999999999999996544 455566553
No 144
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.69 E-value=6.8e-15 Score=172.31 Aligned_cols=121 Identities=13% Similarity=0.154 Sum_probs=85.3
Q ss_pred cCCCeEEEEeCcHHHHHHHHHHHhhcCC--ceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCC--ccEEE
Q 007481 241 TFTSKVIIFSGTKQAAHRLKILFGLAAL--KAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG--VQTVI 316 (602)
Q Consensus 241 ~~~~kvIIF~~s~~~a~~l~~~L~~~g~--~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~--v~~VI 316 (602)
..++++|||++|....+.++..|..... ....+.-+++...|..+++.|+.++-.||++|..+.+|+|+|+ +.+||
T Consensus 750 ~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~vi 829 (928)
T PRK08074 750 ATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLV 829 (928)
T ss_pred hCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEE
Confidence 3467999999999999999999875432 1222333444456789999999988899999999999999987 58888
Q ss_pred EcCCCCC------------------------------hhhHHHHhhhcccCCCcceEEEEEecC--cHHHHHHHHHH
Q 007481 317 NYACPRD------------------------------LTSYVHRVGRTARAGREGYAVTFVTDN--DRSLLKAIAKR 361 (602)
Q Consensus 317 ~~d~p~s------------------------------~~~yiQriGRa~R~g~~g~~i~l~~~~--d~~~l~~i~~~ 361 (602)
+..+|.. ...+.|.+||.-|...+--++++++.. +..+-+.+.+.
T Consensus 830 I~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~s 906 (928)
T PRK08074 830 IVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLES 906 (928)
T ss_pred EecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHh
Confidence 8776641 223358899999965443345555554 33444444443
No 145
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.67 E-value=3e-16 Score=149.25 Aligned_cols=152 Identities=20% Similarity=0.166 Sum_probs=101.4
Q ss_pred CCcHHHHHHHHHHhc-------CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHH
Q 007481 20 KPTPIQAACIPLALT-------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 92 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~-------g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l 92 (602)
+|+|+|.+++..++. .+++++.+|||||||.+++..+. .+.. ++||+||+..|+.|+.+.+..+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~-~l~~--------~~l~~~p~~~l~~Q~~~~~~~~ 73 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALIL-ELAR--------KVLIVAPNISLLEQWYDEFDDF 73 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHH-HHHC--------EEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhh-cccc--------ceeEecCHHHHHHHHHHHHHHh
Confidence 489999999999884 58999999999999998654444 3332 6999999999999999999766
Q ss_pred hhcCCceEEEE------------ECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCC----------CCCCCcceEEE
Q 007481 93 AQFTDIRCCLV------------VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS----------VDLDDLAVLIL 150 (602)
Q Consensus 93 ~~~~~i~v~~~------------~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~----------~~l~~l~llVl 150 (602)
.... ..+... .................+++++|...|......... .....+++||+
T Consensus 74 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~ 152 (184)
T PF04851_consen 74 GSEK-YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVII 152 (184)
T ss_dssp STTS-EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEE
T ss_pred hhhh-hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEE
Confidence 4431 111100 011111122233356679999999999887654211 22346789999
Q ss_pred eCccccccCCcHHHHHHHHHhCCCCcceeeeeccCC
Q 007481 151 DEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 186 (602)
Q Consensus 151 DEah~l~~~gf~~~i~~i~~~~~~~~q~il~SAT~~ 186 (602)
||||++....- ...++. .....+++|||||.
T Consensus 153 DEaH~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 153 DEAHHYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp ETGGCTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred ehhhhcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 99999765431 344444 45667899999986
No 146
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.63 E-value=6.8e-14 Score=143.80 Aligned_cols=113 Identities=19% Similarity=0.252 Sum_probs=99.8
Q ss_pred hcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC-CceE-EEEcCccccccCcCCccEEEE
Q 007481 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ-HVDF-LIATDVAARGLDIIGVQTVIN 317 (602)
Q Consensus 240 ~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g-~~~i-LVaT~~~~~GlDip~v~~VI~ 317 (602)
....-+.|||..-....+-+...|+..|+.|+-|.|+|++..|...++.|.+. ++.| |++-.+++.-||+..+++|+.
T Consensus 635 rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFm 714 (791)
T KOG1002|consen 635 RDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFM 714 (791)
T ss_pred cccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEe
Confidence 33445899999999999999999999999999999999999999999999985 4554 567788999999999999999
Q ss_pred cCCCCChhhHHHHhhhcccCCC--cceEEEEEecCcH
Q 007481 318 YACPRDLTSYVHRVGRTARAGR--EGYAVTFVTDNDR 352 (602)
Q Consensus 318 ~d~p~s~~~yiQriGRa~R~g~--~g~~i~l~~~~d~ 352 (602)
+|+-|++.--.|...|.+|.|+ +-.++.|+-++..
T Consensus 715 mDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsi 751 (791)
T KOG1002|consen 715 MDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSI 751 (791)
T ss_pred ecccccHHHHhhhhhhHHhhcCccceeEEEeehhccH
Confidence 9999999999999999999984 5778888777653
No 147
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.63 E-value=3.3e-15 Score=155.73 Aligned_cols=278 Identities=23% Similarity=0.262 Sum_probs=174.5
Q ss_pred CCEE-EEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHH
Q 007481 36 RDIC-GSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 114 (602)
Q Consensus 36 ~dvi-i~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~ 114 (602)
+.+| -+|||.||||.- +++++..-. ..++--|.|-||.++++.+... ++.|.+++|.........
T Consensus 191 RkIi~H~GPTNSGKTy~----ALqrl~~ak------sGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~~ 256 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYR----ALQRLKSAK------SGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLDN 256 (700)
T ss_pred heEEEEeCCCCCchhHH----HHHHHhhhc------cceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCCC
Confidence 4444 589999999954 466665433 3599999999999999988875 788888888543221111
Q ss_pred HHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHH-HHHHHhCCCCcceeeeeccCChhHHHHH
Q 007481 115 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI-HELVRLCPKRRQTMLFSATLTEDVDELI 193 (602)
Q Consensus 115 ~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i-~~i~~~~~~~~q~il~SAT~~~~~~~l~ 193 (602)
...+..+-||.++.-- -..+++.||||.++|.+....-.+ ..++-.......+.+ .+.+.++.
T Consensus 257 --~~~a~hvScTVEM~sv---------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-----epsvldlV 320 (700)
T KOG0953|consen 257 --GNPAQHVSCTVEMVSV---------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-----EPSVLDLV 320 (700)
T ss_pred --CCcccceEEEEEEeec---------CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-----CchHHHHH
Confidence 1235777777654311 133789999999998875422111 222222211111111 12333444
Q ss_pred HHhcCCCeEEecCCCCCCCCCc-eeeeeeechhhhhhHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCc-ee
Q 007481 194 KLSLTKPLRLSADPSAKRPSTL-TEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALK-AA 271 (602)
Q Consensus 194 ~~~l~~p~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~-~~ 271 (602)
...+... ...+ .+.+-++.+..... ..+.. +.....+-+ |.|-|++....+...+...|.. ++
T Consensus 321 ~~i~k~T-----------Gd~vev~~YeRl~pL~v~~--~~~~s-l~nlk~GDC-vV~FSkk~I~~~k~kIE~~g~~k~a 385 (700)
T KOG0953|consen 321 RKILKMT-----------GDDVEVREYERLSPLVVEE--TALGS-LSNLKPGDC-VVAFSKKDIFTVKKKIEKAGNHKCA 385 (700)
T ss_pred HHHHhhc-----------CCeeEEEeecccCcceehh--hhhhh-hccCCCCCe-EEEeehhhHHHHHHHHHHhcCcceE
Confidence 3333211 0011 11111221111111 22222 233334444 3456777888888888888765 99
Q ss_pred eccCCCCHHHHHHHHHHHhc--CCceEEEEcCccccccCcCCccEEEEcCCC---------CChhhHHHHhhhcccCCC-
Q 007481 272 ELHGNLTQAQRLEALELFRK--QHVDFLIATDVAARGLDIIGVQTVINYACP---------RDLTSYVHRVGRTARAGR- 339 (602)
Q Consensus 272 ~lhg~~~~~eR~~il~~F~~--g~~~iLVaT~~~~~GlDip~v~~VI~~d~p---------~s~~~yiQriGRa~R~g~- 339 (602)
+++|+++++.|.+--..|++ ++++||||||+.++|||+ +++-||.|++- -+..+..|..|||||.|.
T Consensus 386 VIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 386 VIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred EEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccC
Confidence 99999999999999999998 899999999999999998 77778877654 367788899999999863
Q ss_pred --cceEEEEEecCcHHHHHHHHH
Q 007481 340 --EGYAVTFVTDNDRSLLKAIAK 360 (602)
Q Consensus 340 --~g~~i~l~~~~d~~~l~~i~~ 360 (602)
.|.+.++..+ |...++.+.+
T Consensus 465 ~~~G~vTtl~~e-DL~~L~~~l~ 486 (700)
T KOG0953|consen 465 YPQGEVTTLHSE-DLKLLKRILK 486 (700)
T ss_pred CcCceEEEeeHh-hHHHHHHHHh
Confidence 5777776654 4445554443
No 148
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.61 E-value=2.3e-14 Score=147.17 Aligned_cols=303 Identities=22% Similarity=0.213 Sum_probs=178.7
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEE
Q 007481 22 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCC 101 (602)
Q Consensus 22 t~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~ 101 (602)
+.++.+.+..+.+++-+++.|.||||||+ .+|-+..-...+. ...|..--|.|.-|++++..+.. ..++.++
T Consensus 49 w~~k~~F~~~l~~nQ~~v~vGetgsGKtt--QiPq~~~~~~~~~---~~~v~CTQprrvaamsva~RVad---EMDv~lG 120 (699)
T KOG0925|consen 49 WEQKEEFLKLLLNNQIIVLVGETGSGKTT--QIPQFVLEYELSH---LTGVACTQPRRVAAMSVAQRVAD---EMDVTLG 120 (699)
T ss_pred HHhHHHHHHHHhcCceEEEEecCCCCccc--cCcHHHHHHHHhh---ccceeecCchHHHHHHHHHHHHH---Hhccccc
Confidence 34444555666667888899999999997 4554432221111 12478888999999988665442 3355444
Q ss_pred EEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccc-cccCC-cHHHHHHHHHhCCCCccee
Q 007481 102 LVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR-LLELG-FSAEIHELVRLCPKRRQTM 179 (602)
Q Consensus 102 ~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~-l~~~g-f~~~i~~i~~~~~~~~q~i 179 (602)
--+|-. .. .+.......-+-.+|.+.|+.-..+ ...++.+++||+||||. .+... ..-.+.+++... +...+|
T Consensus 121 ~EVGys-Ir-fEdC~~~~T~Lky~tDgmLlrEams--~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~r-pdLk~v 195 (699)
T KOG0925|consen 121 EEVGYS-IR-FEDCTSPNTLLKYCTDGMLLREAMS--DPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNR-PDLKLV 195 (699)
T ss_pred hhcccc-cc-ccccCChhHHHHHhcchHHHHHHhh--CcccccccEEEechhhhhhHHHHHHHHHHHHHHhhC-CCceEE
Confidence 444321 10 0110001111224566666655444 34588999999999995 22221 122334444444 488999
Q ss_pred eeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeec--hhhhhhHHHHHHHHhhhcCCCeEEEEeCcHHHHH
Q 007481 180 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR--RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAH 257 (602)
Q Consensus 180 l~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~ 257 (602)
.+|||+... .+...+.+.|+ +.+.... |. +.++.-. +..-+.....+..++.....+-+|||....++.+
T Consensus 196 vmSatl~a~--Kfq~yf~n~Pl-l~vpg~~--Pv---Ei~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe 267 (699)
T KOG0925|consen 196 VMSATLDAE--KFQRYFGNAPL-LAVPGTH--PV---EIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIE 267 (699)
T ss_pred EeecccchH--HHHHHhCCCCe-eecCCCC--ce---EEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHH
Confidence 999998632 33344444444 3332211 11 1111110 1111122233444555556889999999998888
Q ss_pred HHHHHHhh----c-----CCceeeccCCCCHHHHHHHHHHHh---cC--CceEEEEcCccccccCcCCccEEEEcC----
Q 007481 258 RLKILFGL----A-----ALKAAELHGNLTQAQRLEALELFR---KQ--HVDFLIATDVAARGLDIIGVQTVINYA---- 319 (602)
Q Consensus 258 ~l~~~L~~----~-----g~~~~~lhg~~~~~eR~~il~~F~---~g--~~~iLVaT~~~~~GlDip~v~~VI~~d---- 319 (602)
...+.+.. + .+.|..||- .+...+.+-.. +| .-+|+|+|++++..|-|+++.+||.-+
T Consensus 268 ~aC~~i~re~~~L~~~~g~l~v~PLyP----~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kq 343 (699)
T KOG0925|consen 268 DACRKISREVDNLGPQVGPLKVVPLYP----AQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQ 343 (699)
T ss_pred HHHHHHHHHHHhhccccCCceEEecCc----hhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhh
Confidence 77666652 1 246777872 22222222111 12 346999999999999999999999533
Q ss_pred --------------CCCChhhHHHHhhhcccCCCcceEEEEEecC
Q 007481 320 --------------CPRDLTSYVHRVGRTARAGREGYAVTFVTDN 350 (602)
Q Consensus 320 --------------~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~ 350 (602)
.|-|-.+-.||.||+|| -++|.|+-|+++.
T Consensus 344 kVYNPRIRvesllv~PISkasA~qR~gragr-t~pGkcfrLYte~ 387 (699)
T KOG0925|consen 344 KVYNPRIRVESLLVSPISKASAQQRAGRAGR-TRPGKCFRLYTEE 387 (699)
T ss_pred cccCcceeeeeeeeccchHhHHHHHhhhccC-CCCCceEEeecHH
Confidence 35577888899999998 5799999999864
No 149
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.60 E-value=1.5e-13 Score=157.35 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=61.5
Q ss_pred HCCCCCCcHHHHHHHHHHh----cCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHH
Q 007481 15 ALGYSKPTPIQAACIPLAL----TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 90 (602)
Q Consensus 15 ~~g~~~pt~~Q~~~i~~~l----~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~ 90 (602)
.+.|..++|.|.+.+..+. .+.++++.+|||+|||++.+.|++......+ ...+++|.+.|..=..|+.++++
T Consensus 5 ~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~---~~~kIiy~sRThsQl~q~i~Elk 81 (705)
T TIGR00604 5 YFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP---EVRKIIYASRTHSQLEQATEELR 81 (705)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc---ccccEEEEcccchHHHHHHHHHH
Confidence 3678888999998876655 4789999999999999999999998765443 22478999999988888888888
Q ss_pred HHh
Q 007481 91 KIA 93 (602)
Q Consensus 91 ~l~ 93 (602)
.+.
T Consensus 82 ~~~ 84 (705)
T TIGR00604 82 KLM 84 (705)
T ss_pred hhh
Confidence 753
No 150
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.60 E-value=3.6e-14 Score=151.43 Aligned_cols=111 Identities=15% Similarity=0.191 Sum_probs=95.4
Q ss_pred cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhc--CCceE-EEEcCccccccCcCCccEEEE
Q 007481 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK--QHVDF-LIATDVAARGLDIIGVQTVIN 317 (602)
Q Consensus 241 ~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~--g~~~i-LVaT~~~~~GlDip~v~~VI~ 317 (602)
....+++|...-......+...++..|+....+||.....+|..+++.|+. |...| |++=.+.+.|||+.+.+|+|.
T Consensus 744 ~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlil 823 (901)
T KOG4439|consen 744 SSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLIL 823 (901)
T ss_pred cccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEE
Confidence 345788998888888999999999999999999999999999999999996 44455 456688899999999999999
Q ss_pred cCCCCChhhHHHHhhhcccCCCcceEEEE--EecCc
Q 007481 318 YACPRDLTSYVHRVGRTARAGREGYAVTF--VTDND 351 (602)
Q Consensus 318 ~d~p~s~~~yiQriGRa~R~g~~g~~i~l--~~~~d 351 (602)
+|+.||+..-.|.+.|+.|.|....+++. +..++
T Consensus 824 vDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gT 859 (901)
T KOG4439|consen 824 VDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGT 859 (901)
T ss_pred EecccCHHHHHHHHHHHHHhcccCceEEEEEEecCc
Confidence 99999999999999999999976655554 44444
No 151
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.60 E-value=4.5e-14 Score=158.46 Aligned_cols=316 Identities=16% Similarity=0.219 Sum_probs=214.6
Q ss_pred CCCcHHHHHHHHHHhc-CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHH-HHHHHHhhcC
Q 007481 19 SKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH-SMIEKIAQFT 96 (602)
Q Consensus 19 ~~pt~~Q~~~i~~~l~-g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~-~~~~~l~~~~ 96 (602)
....|+|.++++.+.+ +.++++++|+|||||+++-++++. + ....++++++|.-+.+...+ .+-.++....
T Consensus 1142 ~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-----~--~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~ 1214 (1674)
T KOG0951|consen 1142 QDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-----P--DTIGRAVYIAPLEEIADEQYRDWEKKFSKLL 1214 (1674)
T ss_pred cccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-----C--ccceEEEEecchHHHHHHHHHHHHHhhcccc
Confidence 3348999999999887 568889999999999988777764 1 24568999999999986554 4556666667
Q ss_pred CceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC------cHHHHHHHHH
Q 007481 97 DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG------FSAEIHELVR 170 (602)
Q Consensus 97 ~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g------f~~~i~~i~~ 170 (602)
|..+..+.|..+.. ..+....+|+|+||+++-.. + ....+++.|+||.|.+.... ... +..|..
T Consensus 1215 G~~~~~l~ge~s~~---lkl~~~~~vii~tpe~~d~l-q-----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~ 1284 (1674)
T KOG0951|consen 1215 GLRIVKLTGETSLD---LKLLQKGQVIISTPEQWDLL-Q-----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIAS 1284 (1674)
T ss_pred CceEEecCCccccc---hHHhhhcceEEechhHHHHH-h-----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHH
Confidence 88888888887643 33455679999999997543 2 35668899999999877321 112 566666
Q ss_pred hCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhh-----hHHHHHHHHhh-hcCCC
Q 007481 171 LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREV-----NQEAVLLSLCS-KTFTS 244 (602)
Q Consensus 171 ~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~k~~~l~~l~~-~~~~~ 244 (602)
.+-+..+++.+|..+.+. .++ .++...-.+.+ +...++..+.-.+-.+...... .-...+..++. ...+.
T Consensus 1285 q~~k~ir~v~ls~~lana-~d~--ig~s~~~v~Nf-~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k 1360 (1674)
T KOG0951|consen 1285 QLEKKIRVVALSSSLANA-RDL--IGASSSGVFNF-SPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRK 1360 (1674)
T ss_pred HHHhheeEEEeehhhccc-hhh--ccccccceeec-CcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCC
Confidence 777788899999988643 333 23332222222 2334555444333332211111 11112223332 33467
Q ss_pred eEEEEeCcHHHHHHHHHHHhh----------------------cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc
Q 007481 245 KVIIFSGTKQAAHRLKILFGL----------------------AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302 (602)
Q Consensus 245 kvIIF~~s~~~a~~l~~~L~~----------------------~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~ 302 (602)
+.+||+++++.|..++.-|-. ..++..+-|-+++..+..-+-.-|..|.+.|+|...-
T Consensus 1361 ~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~ 1440 (1674)
T KOG0951|consen 1361 PAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD 1440 (1674)
T ss_pred CeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc
Confidence 899999999999876433210 1123333388999999999999999999999998876
Q ss_pred cccccCcCCccEEE----EcC------CCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHH
Q 007481 303 AARGLDIIGVQTVI----NYA------CPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359 (602)
Q Consensus 303 ~~~GlDip~v~~VI----~~d------~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~ 359 (602)
..|+-...--+|+ .|| .+.+.....|++|+|.| .|.|++++......+++.+.
T Consensus 1441 -~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl 1503 (1674)
T KOG0951|consen 1441 -CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFL 1503 (1674)
T ss_pred -cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhc
Confidence 8888764433333 233 34467889999999988 68899999988888777653
No 152
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.59 E-value=2.1e-13 Score=155.64 Aligned_cols=106 Identities=16% Similarity=0.181 Sum_probs=78.5
Q ss_pred cCCCeEEEEeCcHHHHHHHHHHHhhcCCc-eeeccCCCCHHHHHHHHHHHhcCCc-eEEEEcCccccccCcCC--ccEEE
Q 007481 241 TFTSKVIIFSGTKQAAHRLKILFGLAALK-AAELHGNLTQAQRLEALELFRKQHV-DFLIATDVAARGLDIIG--VQTVI 316 (602)
Q Consensus 241 ~~~~kvIIF~~s~~~a~~l~~~L~~~g~~-~~~lhg~~~~~eR~~il~~F~~g~~-~iLVaT~~~~~GlDip~--v~~VI 316 (602)
..++++|||++|...+..+...+...... ....+|..+. ...++.|..+.- -++|+|..+++|+|+|+ +.+||
T Consensus 477 ~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~---~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vv 553 (654)
T COG1199 477 ASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDER---EELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVV 553 (654)
T ss_pred hcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcH---HHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEE
Confidence 34559999999999999999999876653 3445554443 478888887654 89999999999999987 57888
Q ss_pred EcCCCC------------------------------ChhhHHHHhhhcccCCCcceEEEEEec
Q 007481 317 NYACPR------------------------------DLTSYVHRVGRTARAGREGYAVTFVTD 349 (602)
Q Consensus 317 ~~d~p~------------------------------s~~~yiQriGRa~R~g~~g~~i~l~~~ 349 (602)
+..+|. ......|.+||.-|.-.+--++++++.
T Consensus 554 I~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 554 IVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 877774 234557999999995444334444444
No 153
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=2.4e-12 Score=145.15 Aligned_cols=111 Identities=21% Similarity=0.224 Sum_probs=91.5
Q ss_pred cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC-CceEEEEcCccccccCcC--------C
Q 007481 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ-HVDFLIATDVAARGLDII--------G 311 (602)
Q Consensus 241 ~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g-~~~iLVaT~~~~~GlDip--------~ 311 (602)
..+.||||-|.|....+.|+..|...|++.-+|+......+-.-+-+ .| .-.|-|||++++||.||. +
T Consensus 626 ~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~---AG~~GaVTIATNMAGRGTDIkLg~~V~e~G 702 (1112)
T PRK12901 626 EAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAE---AGQPGTVTIATNMAGRGTDIKLSPEVKAAG 702 (1112)
T ss_pred HCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHh---cCCCCcEEEeccCcCCCcCcccchhhHHcC
Confidence 35789999999999999999999999999888887644333222222 24 446889999999999995 3
Q ss_pred ccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHH
Q 007481 312 VQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 354 (602)
Q Consensus 312 v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~ 354 (602)
=-+||-...|.|....-|..||+||.|.+|.+.+|++-.|.-+
T Consensus 703 GL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLm 745 (1112)
T PRK12901 703 GLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLM 745 (1112)
T ss_pred CCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHHH
Confidence 3579999999999999999999999999999999999877544
No 154
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.57 E-value=1e-12 Score=138.63 Aligned_cols=297 Identities=20% Similarity=0.189 Sum_probs=204.1
Q ss_pred CCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcC-C--------ceEE----------EEECCCCHHHHHHHH-------
Q 007481 63 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT-D--------IRCC----------LVVGGLSTKMQETAL------- 116 (602)
Q Consensus 63 ~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~-~--------i~v~----------~~~g~~~~~~~~~~l------- 116 (602)
++.+...|+||||||+|..|.++.+.+-.+.... . -..+ .-.........+..+
T Consensus 31 RDQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD 110 (442)
T PF06862_consen 31 RDQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDD 110 (442)
T ss_pred hccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccc
Confidence 3445677899999999999999988887776431 0 0000 000000111122221
Q ss_pred ------------------cCCCcEEEECcHHHHHHHHc----cCCC-CCCCcceEEEeCccccc--cCCcHHHHHHHHHh
Q 007481 117 ------------------RSMPDIVVATPGRMIDHLRN----SMSV-DLDDLAVLILDEADRLL--ELGFSAEIHELVRL 171 (602)
Q Consensus 117 ------------------~~~~~IvI~Tp~~L~~~l~~----~~~~-~l~~l~llVlDEah~l~--~~gf~~~i~~i~~~ 171 (602)
...+|||||+|=-|...+.. .... .|++++++|+|.||.|+ +|.+...+..-+..
T Consensus 111 ~FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~ 190 (442)
T PF06862_consen 111 CFRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNL 190 (442)
T ss_pred eEEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhcc
Confidence 13379999999999887763 1122 38999999999999766 44333333222322
Q ss_pred CC---------------------CCcceeeeeccCChhHHHHHHHhcCCC---eEEecCCC-----CCCCCCceeeeeee
Q 007481 172 CP---------------------KRRQTMLFSATLTEDVDELIKLSLTKP---LRLSADPS-----AKRPSTLTEEVVRI 222 (602)
Q Consensus 172 ~~---------------------~~~q~il~SAT~~~~~~~l~~~~l~~p---~~~~~~~~-----~~~~~~l~~~~~~~ 222 (602)
.| .-+|+|++|+..++++..+....+.+. +.+..... ......+.|.+.++
T Consensus 191 ~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~ 270 (442)
T PF06862_consen 191 QPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRF 270 (442)
T ss_pred CCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEe
Confidence 23 235999999999999999988866553 22221111 12344566777665
Q ss_pred chhhh----hhHHHHH-----HHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCC
Q 007481 223 RRMRE----VNQEAVL-----LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 293 (602)
Q Consensus 223 ~~~~~----~~k~~~l-----~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~ 293 (602)
..... ..+..++ -.+......+++|||++|.-.--++..+|...++..+.+|...++.+-..+-..|..|+
T Consensus 271 ~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~ 350 (442)
T PF06862_consen 271 DCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGR 350 (442)
T ss_pred cCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCC
Confidence 43221 1222222 22221344579999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcCcc--ccccCcCCccEEEEcCCCCChhhHHHHhhhcccCC------CcceEEEEEecCcHHHHHHHH
Q 007481 294 VDFLIATDVA--ARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG------REGYAVTFVTDNDRSLLKAIA 359 (602)
Q Consensus 294 ~~iLVaT~~~--~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g------~~g~~i~l~~~~d~~~l~~i~ 359 (602)
..||+.|.-+ -+-..|.++.+||.|.+|..+.-|...++-..... ....|.+|++.-|.-.++.|.
T Consensus 351 ~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 351 KPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred ceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 9999999753 44567889999999999999999988886655432 257899999999877777664
No 155
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.56 E-value=5.2e-12 Score=143.81 Aligned_cols=105 Identities=21% Similarity=0.277 Sum_probs=75.1
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhc-CCceeeccCCCCHHHHHHHHHHHhc----CCceEEEEcCccccccCcCC--ccE
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRK----QHVDFLIATDVAARGLDIIG--VQT 314 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~~-g~~~~~lhg~~~~~eR~~il~~F~~----g~~~iLVaT~~~~~GlDip~--v~~ 314 (602)
.++++|||++|....+.++..|... +.. ...+|. ..+..+++.|++ |+-.||++|..+.+|||+|+ +++
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEE
Confidence 3456899999999999999988643 333 344554 256778877774 67789999999999999987 788
Q ss_pred EEEcCCCC----Ch--------------------------hhHHHHhhhcccCCCcceEEEEEecC
Q 007481 315 VINYACPR----DL--------------------------TSYVHRVGRTARAGREGYAVTFVTDN 350 (602)
Q Consensus 315 VI~~d~p~----s~--------------------------~~yiQriGRa~R~g~~g~~i~l~~~~ 350 (602)
||+..+|. ++ ..+.|.+||.-|...+--+++++++.
T Consensus 609 vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 609 VIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 99877764 11 22358889999954443344445543
No 156
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.54 E-value=1.7e-14 Score=118.01 Aligned_cols=81 Identities=47% Similarity=0.724 Sum_probs=76.9
Q ss_pred HHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccC
Q 007481 258 RLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 337 (602)
Q Consensus 258 ~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~ 337 (602)
.+...|...++.+..+||+++..+|..++..|+++...|||+|+++++|+|+|++++||.+++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 45677888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 007481 338 G 338 (602)
Q Consensus 338 g 338 (602)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 157
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.53 E-value=1.1e-12 Score=154.95 Aligned_cols=107 Identities=22% Similarity=0.332 Sum_probs=97.1
Q ss_pred eEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC--CceEEEEcCccccccCcCCccEEEEcCCCC
Q 007481 245 KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ--HVDFLIATDVAARGLDIIGVQTVINYACPR 322 (602)
Q Consensus 245 kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g--~~~iLVaT~~~~~GlDip~v~~VI~~d~p~ 322 (602)
++|||++.......+..+|...++....++|+++..+|...++.|.++ ..-+|+++.+++.|||+..+++||+||+.|
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~w 792 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWW 792 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecccc
Confidence 899999999999999999999999999999999999999999999986 555678889999999999999999999999
Q ss_pred ChhhHHHHhhhcccCCCcc--eEEEEEecCc
Q 007481 323 DLTSYVHRVGRTARAGREG--YAVTFVTDND 351 (602)
Q Consensus 323 s~~~yiQriGRa~R~g~~g--~~i~l~~~~d 351 (602)
++....|...|+.|.|+.. .++-++..++
T Consensus 793 np~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 793 NPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred ChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 9999999999999998654 4555566665
No 158
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.51 E-value=1.4e-12 Score=146.01 Aligned_cols=139 Identities=16% Similarity=0.185 Sum_probs=94.4
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHH---HHH
Q 007481 39 CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ---ETA 115 (602)
Q Consensus 39 ii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~---~~~ 115 (602)
+..+.+|||||.+| +.++...+.. +.++|||+|...|+.|+...|+... .+..+..++++.+.... |..
T Consensus 164 i~~~~~GSGKTevy-l~~i~~~l~~-----Gk~vLvLvPEi~lt~q~~~rl~~~f--~~~~v~~lhS~l~~~~R~~~w~~ 235 (665)
T PRK14873 164 VWQALPGEDWARRL-AAAAAATLRA-----GRGALVVVPDQRDVDRLEAALRALL--GAGDVAVLSAGLGPADRYRRWLA 235 (665)
T ss_pred HhhcCCCCcHHHHH-HHHHHHHHHc-----CCeEEEEecchhhHHHHHHHHHHHc--CCCcEEEECCCCCHHHHHHHHHH
Confidence 34445699999998 5555555543 3369999999999999999998643 23678889998876543 333
Q ss_pred H-cCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccc--cC-C--cHHHHHHHHHhCCCCcceeeeeccCChhH
Q 007481 116 L-RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL--EL-G--FSAEIHELVRLCPKRRQTMLFSATLTEDV 189 (602)
Q Consensus 116 l-~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~--~~-g--f~~~i~~i~~~~~~~~q~il~SAT~~~~~ 189 (602)
+ .+...|||+| ++.....+.++.+|||||=|.-. +. + |...--.+++....+..+|+.|||++-+.
T Consensus 236 ~~~G~~~IViGt--------RSAvFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles 307 (665)
T PRK14873 236 VLRGQARVVVGT--------RSAVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEA 307 (665)
T ss_pred HhCCCCcEEEEc--------ceeEEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHH
Confidence 3 4558999999 33334578899999999999532 11 1 22221222333345677999999998665
Q ss_pred HHHH
Q 007481 190 DELI 193 (602)
Q Consensus 190 ~~l~ 193 (602)
...+
T Consensus 308 ~~~~ 311 (665)
T PRK14873 308 QALV 311 (665)
T ss_pred HHHH
Confidence 5444
No 159
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.50 E-value=9e-13 Score=144.14 Aligned_cols=145 Identities=19% Similarity=0.260 Sum_probs=109.2
Q ss_pred HHHHHhh--hcCCCeEEEEeCcHHHHHHHHHHHhh----------------------cCCceeeccCCCCHHHHHHHHHH
Q 007481 233 VLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGL----------------------AALKAAELHGNLTQAQRLEALEL 288 (602)
Q Consensus 233 ~l~~l~~--~~~~~kvIIF~~s~~~a~~l~~~L~~----------------------~g~~~~~lhg~~~~~eR~~il~~ 288 (602)
+|+.|+. ...++++|||..+......+..+|.. .|.....|.|..+..+|......
T Consensus 1130 LLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~ 1209 (1567)
T KOG1015|consen 1130 LLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEE 1209 (1567)
T ss_pred hHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHH
Confidence 3444443 34578999999999999999888863 24567889999999999999999
Q ss_pred HhcC-C---ceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEE--EEecCcHHHHHHHHHHh
Q 007481 289 FRKQ-H---VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT--FVTDNDRSLLKAIAKRA 362 (602)
Q Consensus 289 F~~g-~---~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~--l~~~~d~~~l~~i~~~~ 362 (602)
|++- + --+||+|.+++.|||+-.++-||+||..|||.--.|.+=|+.|.|+.--||+ |+..++.+.--+-...+
T Consensus 1210 FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVT 1289 (1567)
T KOG1015|consen 1210 FNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVT 1289 (1567)
T ss_pred hcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHh
Confidence 9974 2 2379999999999999999999999999999999999999999997655554 46655433222222223
Q ss_pred cCcchhhhhhhhhhH
Q 007481 363 GSKLKSRIVAEQSIT 377 (602)
Q Consensus 363 ~~~~~~~~~~~~~~~ 377 (602)
...+-.++|+++.+.
T Consensus 1290 Kqsls~RVVDeqQv~ 1304 (1567)
T KOG1015|consen 1290 KQSLSFRVVDEQQVE 1304 (1567)
T ss_pred HhhhhhhhhhHHHHH
Confidence 344455666666543
No 160
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.41 E-value=1.1e-11 Score=137.26 Aligned_cols=288 Identities=17% Similarity=0.229 Sum_probs=176.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHH
Q 007481 37 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 116 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l 116 (602)
-.+|.+|+|||||.+. +..+...+.. +..++|+|+..+.|+.+....++... ..++....-.++. .+
T Consensus 51 V~vVRSpMGTGKTtaL-i~wLk~~l~~----~~~~VLvVShRrSL~~sL~~rf~~~~-l~gFv~Y~d~~~~-------~i 117 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTAL-IRWLKDALKN----PDKSVLVVSHRRSLTKSLAERFKKAG-LSGFVNYLDSDDY-------II 117 (824)
T ss_pred eEEEECCCCCCcHHHH-HHHHHHhccC----CCCeEEEEEhHHHHHHHHHHHHhhcC-CCcceeeeccccc-------cc
Confidence 3458999999999874 5666555433 34479999999999999988887531 1122211111110 11
Q ss_pred c-CCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHH-------HHHHHhCCCCcceeeeeccCChh
Q 007481 117 R-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI-------HELVRLCPKRRQTMLFSATLTED 188 (602)
Q Consensus 117 ~-~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i-------~~i~~~~~~~~q~il~SAT~~~~ 188 (602)
. ...+-+++..+.|.... ...+.++++|||||+-..+..-|...+ ..+...+.....+|++-||+.+.
T Consensus 118 ~~~~~~rLivqIdSL~R~~----~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~ 193 (824)
T PF02399_consen 118 DGRPYDRLIVQIDSLHRLD----GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQ 193 (824)
T ss_pred cccccCeEEEEehhhhhcc----cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHH
Confidence 1 13466777766665432 234677999999999976654333222 22344556677899999999999
Q ss_pred HHHHHHHhcC-CCeEEecCCCCCCCCCceee-eeeech---------------------------------hhhhhHHHH
Q 007481 189 VDELIKLSLT-KPLRLSADPSAKRPSTLTEE-VVRIRR---------------------------------MREVNQEAV 233 (602)
Q Consensus 189 ~~~l~~~~l~-~p~~~~~~~~~~~~~~l~~~-~~~~~~---------------------------------~~~~~k~~~ 233 (602)
..+++..... .++.+.+..-. . +++... .+.++. .........
T Consensus 194 tvdFl~~~Rp~~~i~vI~n~y~-~-~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF 271 (824)
T PF02399_consen 194 TVDFLASCRPDENIHVIVNTYA-S-PGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTF 271 (824)
T ss_pred HHHHHHHhCCCCcEEEEEeeee-c-CCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhH
Confidence 8888776543 33333222111 0 011000 000000 000111222
Q ss_pred HHHHhhh-cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCc
Q 007481 234 LLSLCSK-TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGV 312 (602)
Q Consensus 234 l~~l~~~-~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v 312 (602)
+..+... ..+.++.||+.|...++.++.+....+.++..++|.-+..+ ++.| ++++|+|-|.++..|+++...
T Consensus 272 ~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W--~~~~VviYT~~itvG~Sf~~~ 345 (824)
T PF02399_consen 272 FSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESW--KKYDVVIYTPVITVGLSFEEK 345 (824)
T ss_pred HHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----cccc--cceeEEEEeceEEEEeccchh
Confidence 2223322 34668889999999999999999999889999988766552 2223 589999999999999999654
Q ss_pred --cEEEEcCCCC----ChhhHHHHhhhcccCCCcceEEEEEecC
Q 007481 313 --QTVINYACPR----DLTSYVHRVGRTARAGREGYAVTFVTDN 350 (602)
Q Consensus 313 --~~VI~~d~p~----s~~~yiQriGRa~R~g~~g~~i~l~~~~ 350 (602)
+-|+-|--|. +..+..|++||+-. =.....+++++..
T Consensus 346 HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~-l~~~ei~v~~d~~ 388 (824)
T PF02399_consen 346 HFDSMFAYVKPMSYGPDMVSVYQMLGRVRS-LLDNEIYVYIDAS 388 (824)
T ss_pred hceEEEEEecCCCCCCcHHHHHHHHHHHHh-hccCeEEEEEecc
Confidence 4455442232 45568899999544 3455566665543
No 161
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.41 E-value=2.8e-11 Score=137.27 Aligned_cols=312 Identities=20% Similarity=0.162 Sum_probs=182.1
Q ss_pred CCcHHHHHHHHHHhc--------CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHH
Q 007481 20 KPTPIQAACIPLALT--------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 91 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~--------g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~ 91 (602)
....+|-+|+..+.. |-=+|-.|.||+|||++ -.-|+..+-.. ..++|..|-.-.|.|..|.-+.++.
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~a-NARImyaLsd~---~~g~RfsiALGLRTLTLQTGda~r~ 483 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLA-NARAMYALRDD---KQGARFAIALGLRSLTLQTGHALKT 483 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHH-HHHHHHHhCCC---CCCceEEEEccccceeccchHHHHH
Confidence 346799999987765 23356689999999987 35555554322 3577899999999999999888887
Q ss_pred HhhcCCceEEEEECCCCHHHHHH-------------------------------------------HHc--------CCC
Q 007481 92 IAQFTDIRCCLVVGGLSTKMQET-------------------------------------------ALR--------SMP 120 (602)
Q Consensus 92 l~~~~~i~v~~~~g~~~~~~~~~-------------------------------------------~l~--------~~~ 120 (602)
-....+-..++++|+.....-.. .+. -..
T Consensus 484 rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~a 563 (1110)
T TIGR02562 484 RLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAA 563 (1110)
T ss_pred hcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcC
Confidence 66666667788888632211100 000 114
Q ss_pred cEEEECcHHHHHHHHcc--CCCCCC--C--cceEEEeCccccccCCcHHHHHHHHHhC-CCCcceeeeeccCChhHHHHH
Q 007481 121 DIVVATPGRMIDHLRNS--MSVDLD--D--LAVLILDEADRLLELGFSAEIHELVRLC-PKRRQTMLFSATLTEDVDELI 193 (602)
Q Consensus 121 ~IvI~Tp~~L~~~l~~~--~~~~l~--~--l~llVlDEah~l~~~gf~~~i~~i~~~~-~~~~q~il~SAT~~~~~~~l~ 193 (602)
.|+|||++.++-..... ....+. . -+.|||||+|-+-...+ ..+..++..+ .....++++|||+|+.+...+
T Consensus 564 pv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~-~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L 642 (1110)
T TIGR02562 564 PVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDL-PALLRLVQLAGLLGSRVLLSSATLPPALVKTL 642 (1110)
T ss_pred CeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHH-HHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHH
Confidence 79999999998776321 111111 1 24799999998654432 2233333321 235678999999998765542
Q ss_pred H-----------HhcC---CCeEE---ecCCCCCCC----------------------------CCceeeeeeechhhh-
Q 007481 194 K-----------LSLT---KPLRL---SADPSAKRP----------------------------STLTEEVVRIRRMRE- 227 (602)
Q Consensus 194 ~-----------~~l~---~p~~~---~~~~~~~~~----------------------------~~l~~~~~~~~~~~~- 227 (602)
. .... .|+.+ -++...... .--.-.++.+.....
T Consensus 643 ~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~ 722 (1110)
T TIGR02562 643 FRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPRE 722 (1110)
T ss_pred HHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcccc
Confidence 1 1122 12111 111111100 000111122221110
Q ss_pred --hhHHH----HHHHHh---h----hc--CCCe---EEEEeCcHHHHHHHHHHHhhc----C--CceeeccCCCCHHHHH
Q 007481 228 --VNQEA----VLLSLC---S----KT--FTSK---VIIFSGTKQAAHRLKILFGLA----A--LKAAELHGNLTQAQRL 283 (602)
Q Consensus 228 --~~k~~----~l~~l~---~----~~--~~~k---vIIF~~s~~~a~~l~~~L~~~----g--~~~~~lhg~~~~~eR~ 283 (602)
..... ++..++ . .. .+.+ .+|-+.+++.+-.++..|-.. + +.+..+|+..+...|.
T Consensus 723 ~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs 802 (1110)
T TIGR02562 723 NESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRS 802 (1110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHH
Confidence 01111 111111 1 01 1112 366667777666666655433 2 4577899999888887
Q ss_pred HHHHHH----------------------hc----CCceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccC
Q 007481 284 EALELF----------------------RK----QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 337 (602)
Q Consensus 284 ~il~~F----------------------~~----g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~ 337 (602)
.+.+.+ .+ +...|+|+|++.+.|+|+ +.+++|- -|.+..+.+|+.||+.|.
T Consensus 803 ~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~ 879 (1110)
T TIGR02562 803 YIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRH 879 (1110)
T ss_pred HHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhccccc
Confidence 766543 11 366799999999999998 4566543 345789999999999997
Q ss_pred CC
Q 007481 338 GR 339 (602)
Q Consensus 338 g~ 339 (602)
+.
T Consensus 880 ~~ 881 (1110)
T TIGR02562 880 RL 881 (1110)
T ss_pred cc
Confidence 64
No 162
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=4.3e-11 Score=124.63 Aligned_cols=342 Identities=20% Similarity=0.212 Sum_probs=222.1
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEE-EcCCCchH--HHHHHHHHHHHHHcCC-------------------------CCCC
Q 007481 17 GYSKPTPIQAACIPLALTGRDICG-SAITGSGK--TAAFALPTLERLLYRP-------------------------KRIP 68 (602)
Q Consensus 17 g~~~pt~~Q~~~i~~~l~g~dvii-~a~TGSGK--T~a~~l~il~~l~~~~-------------------------~~~~ 68 (602)
.-..+|+.|.+.+..+.+-+|++. ....+.|+ +.+|.+.++.+++... .+..
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 345789999999999999999873 34445565 4567788888887511 1245
Q ss_pred CcEEEEEcChHHHHHHHHHHHHHHhhcCCc---------eEEEEECCC--------C-HHHHHHHH--------------
Q 007481 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDI---------RCCLVVGGL--------S-TKMQETAL-------------- 116 (602)
Q Consensus 69 ~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i---------~v~~~~g~~--------~-~~~~~~~l-------------- 116 (602)
.++||||||+|+-|..+.+.+..+....+- ++.--+++. . ...-...+
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 678999999999999998888877432211 111111110 0 00000000
Q ss_pred ----------cCCCcEEEECcHHHHHHHHccC----CC-CCCCcceEEEeCccccccCCcHHHHHHHHHhCCC-------
Q 007481 117 ----------RSMPDIVVATPGRMIDHLRNSM----SV-DLDDLAVLILDEADRLLELGFSAEIHELVRLCPK------- 174 (602)
Q Consensus 117 ----------~~~~~IvI~Tp~~L~~~l~~~~----~~-~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~------- 174 (602)
....||+||+|--|.-.+.+.. .+ .++.+.++|||-||.|+...|. .+..|+.++..
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwE-hl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWE-HLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHH-HHHHHHHHhhcCcccccC
Confidence 2347999999999888776422 12 3788999999999988765443 34455555432
Q ss_pred -----------------CcceeeeeccCChhHHHHHHHhcCCC---eEEecCCCC----CCCCCceeeeeeec--hhh--
Q 007481 175 -----------------RRQTMLFSATLTEDVDELIKLSLTKP---LRLSADPSA----KRPSTLTEEVVRIR--RMR-- 226 (602)
Q Consensus 175 -----------------~~q~il~SAT~~~~~~~l~~~~l~~p---~~~~~~~~~----~~~~~l~~~~~~~~--~~~-- 226 (602)
-+|+++||+--.+.+..+....|.+- +........ .....+.|.+..+. ...
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~ 531 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIET 531 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccC
Confidence 13899999988777777766655442 111111111 01111222222211 111
Q ss_pred hhhHHHHHHH-Hhh---hcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc
Q 007481 227 EVNQEAVLLS-LCS---KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302 (602)
Q Consensus 227 ~~~k~~~l~~-l~~---~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~ 302 (602)
...+..++.. ++. ......+||+.++.-.--++..+|+..++....+|.-.++..-..+-+-|-.|...||+-|.-
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER 611 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTER 611 (698)
T ss_pred chHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehh
Confidence 1122222221 111 222457899999999999999999999998888888778877778888899999999999975
Q ss_pred c--ccccCcCCccEEEEcCCCCChhhHH---HHhhhcccCC----CcceEEEEEecCcHHHHHHHH
Q 007481 303 A--ARGLDIIGVQTVINYACPRDLTSYV---HRVGRTARAG----REGYAVTFVTDNDRSLLKAIA 359 (602)
Q Consensus 303 ~--~~GlDip~v~~VI~~d~p~s~~~yi---QriGRa~R~g----~~g~~i~l~~~~d~~~l~~i~ 359 (602)
+ -+-.+|.+|.-||.|.+|.+|.-|. .+.+|+.-.| ..-.|.++++.-|.--+..+.
T Consensus 612 ~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~iv 677 (698)
T KOG2340|consen 612 AHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIV 677 (698)
T ss_pred hhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhh
Confidence 4 5668899999999999999988774 5556654333 234677788888876666553
No 163
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.33 E-value=7.3e-12 Score=128.80 Aligned_cols=153 Identities=22% Similarity=0.186 Sum_probs=94.8
Q ss_pred HHHHHHHHHhc-------------CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHH
Q 007481 24 IQAACIPLALT-------------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 90 (602)
Q Consensus 24 ~Q~~~i~~~l~-------------g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~ 90 (602)
+|.+++.+++. .+.+|++..+|+|||+.. +.++..+...........+|||||. .+..||..++.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~-i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITA-IALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHH-HHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhh-hhhhhhhhhccccccccceeEeecc-chhhhhhhhhc
Confidence 68888877742 367899999999999875 4444444443322222359999999 77789999999
Q ss_pred HHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHH--------HHHHccCCCCCCCcceEEEeCccccccCCcH
Q 007481 91 KIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMI--------DHLRNSMSVDLDDLAVLILDEADRLLELGFS 162 (602)
Q Consensus 91 ~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~--------~~l~~~~~~~l~~l~llVlDEah~l~~~gf~ 162 (602)
.++....+++....|...............+|+|+|++.+. +.+.. ..+++||+||+|.+-+.. .
T Consensus 79 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~------~~~~~vIvDEaH~~k~~~-s 151 (299)
T PF00176_consen 79 KWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQ------IKWDRVIVDEAHRLKNKD-S 151 (299)
T ss_dssp HHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHT------SEEEEEEETTGGGGTTTT-S
T ss_pred cccccccccccccccccccccccccccccceeeecccccccccccccccccccc------ccceeEEEeccccccccc-c
Confidence 98865466777666654122222223455799999999998 22222 338899999999986542 2
Q ss_pred HHHHHHHHhCCCCcceeeeeccCCh
Q 007481 163 AEIHELVRLCPKRRQTMLFSATLTE 187 (602)
Q Consensus 163 ~~i~~i~~~~~~~~q~il~SAT~~~ 187 (602)
. ....+..+. ....+++||||..
T Consensus 152 ~-~~~~l~~l~-~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 152 K-RYKALRKLR-ARYRWLLSGTPIQ 174 (299)
T ss_dssp H-HHHHHHCCC-ECEEEEE-SS-SS
T ss_pred c-ccccccccc-cceEEeecccccc
Confidence 2 223333344 6677999999853
No 164
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.32 E-value=1.2e-09 Score=127.79 Aligned_cols=299 Identities=18% Similarity=0.182 Sum_probs=165.6
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHH
Q 007481 36 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~ 115 (602)
+..+|+--||||||++ ++-+...+... ...+.|+||+-++.|-.|+.+.|..+........ ...+.......
T Consensus 274 ~~G~IWHtqGSGKTlT-m~~~A~~l~~~---~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~ 345 (962)
T COG0610 274 KGGYIWHTQGSGKTLT-MFKLARLLLEL---PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKEL 345 (962)
T ss_pred CceEEEeecCCchHHH-HHHHHHHHHhc---cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHH
Confidence 5699999999999986 34444444443 2456899999999999999999998865433211 33344444555
Q ss_pred HcCC-CcEEEECcHHHHHHHHccCCCCCCC-cceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeeccCChhHHHH-
Q 007481 116 LRSM-PDIVVATPGRMIDHLRNSMSVDLDD-LAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDEL- 192 (602)
Q Consensus 116 l~~~-~~IvI~Tp~~L~~~l~~~~~~~l~~-l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l- 192 (602)
+... ..|+|||-+.|-..+.......+.. -=++|+||||+--. | .....+...++ ....++||+||...-...
T Consensus 346 l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~-G--~~~~~~~~~~~-~a~~~gFTGTPi~~~d~~t 421 (962)
T COG0610 346 LEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY-G--ELAKLLKKALK-KAIFIGFTGTPIFKEDKDT 421 (962)
T ss_pred HhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccc-c--HHHHHHHHHhc-cceEEEeeCCccccccccc
Confidence 5544 4899999999988776531111222 22789999998542 2 22222233333 377899999995332221
Q ss_pred HHHhcCC-----------------CeEEecCCC-CCCCCCceeeeeeec----hhhh----h----------------hH
Q 007481 193 IKLSLTK-----------------PLRLSADPS-AKRPSTLTEEVVRIR----RMRE----V----------------NQ 230 (602)
Q Consensus 193 ~~~~l~~-----------------p~~~~~~~~-~~~~~~l~~~~~~~~----~~~~----~----------------~k 230 (602)
....+.. |+.+..... ........+....+. .... . ..
T Consensus 422 t~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~ 501 (962)
T COG0610 422 TKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRL 501 (962)
T ss_pred hhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHH
Confidence 0111111 222221100 000000000000000 0000 0 00
Q ss_pred ----HHHHHHHhh-hcCCCeEEEEeCcHHHHHHHHHHHhhcC---------Cc------------eeec--cCCCCHHHH
Q 007481 231 ----EAVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAA---------LK------------AAEL--HGNLTQAQR 282 (602)
Q Consensus 231 ----~~~l~~l~~-~~~~~kvIIF~~s~~~a~~l~~~L~~~g---------~~------------~~~l--hg~~~~~eR 282 (602)
..+...+.. ...+.++.+.|.++..+..+.+...... .. -... |.. .....
T Consensus 502 ~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~ 580 (962)
T COG0610 502 IRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK-LKDEK 580 (962)
T ss_pred HHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-HHHHH
Confidence 000111111 3345678888888874444433322110 00 0000 111 12223
Q ss_pred HHHHHH--HhcCCceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccC--C--CcceEEEEEe
Q 007481 283 LEALEL--FRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA--G--REGYAVTFVT 348 (602)
Q Consensus 283 ~~il~~--F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~--g--~~g~~i~l~~ 348 (602)
...... +.....++||.+|++-.|+|-|.++++. +|-|.-....+|.+-|+-|. + ..|.++-|+.
T Consensus 581 ~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 581 KDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred hhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 334444 3346899999999999999999998876 67888888999999999993 3 2366666655
No 165
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.31 E-value=1.2e-10 Score=129.98 Aligned_cols=319 Identities=20% Similarity=0.206 Sum_probs=197.7
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEE
Q 007481 22 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCC 101 (602)
Q Consensus 22 t~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~ 101 (602)
+|+=.+.+-.+.....-|+.+.||-|||+++.+|+.-..+.. -.|.+++..--||.--.+++..+..+.+++++
T Consensus 80 ~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~g------kgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG 153 (822)
T COG0653 80 RHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAG------KGVHVVTVNDYLARRDAEWMGPLYEFLGLSVG 153 (822)
T ss_pred ChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCC------CCcEEeeehHHhhhhCHHHHHHHHHHcCCcee
Confidence 344455566666667788999999999999988886554433 24889999999999889999999999999999
Q ss_pred EEECCCCHHHHHHHHcCCCcEEEECcHHH-HHHHHccCC-----CCCCCcceEEEeCccccc-c--------CC------
Q 007481 102 LVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMS-----VDLDDLAVLILDEADRLL-E--------LG------ 160 (602)
Q Consensus 102 ~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L-~~~l~~~~~-----~~l~~l~llVlDEah~l~-~--------~g------ 160 (602)
+...+.+....... ..+||..+|-..| .|+++.+.. .....+.+.|+||+|.++ + .|
T Consensus 154 ~~~~~m~~~ek~~a--Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~~~ 231 (822)
T COG0653 154 VILAGMSPEEKRAA--YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAEDSS 231 (822)
T ss_pred eccCCCChHHHHHH--HhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccccCc
Confidence 99999877655544 4579999997665 444443211 123456788888888632 1 00
Q ss_pred -cHHHHHHHHHhCCC---------------------------------------------------------------Cc
Q 007481 161 -FSAEIHELVRLCPK---------------------------------------------------------------RR 176 (602)
Q Consensus 161 -f~~~i~~i~~~~~~---------------------------------------------------------------~~ 176 (602)
....+..+...+.. +-
T Consensus 232 ~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd~ 311 (822)
T COG0653 232 ELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRDG 311 (822)
T ss_pred hHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEecC
Confidence 11122222211110 00
Q ss_pred ------------------------------------------------------ceeeeeccCChhHHHHHHHhcCCCeE
Q 007481 177 ------------------------------------------------------QTMLFSATLTEDVDELIKLSLTKPLR 202 (602)
Q Consensus 177 ------------------------------------------------------q~il~SAT~~~~~~~l~~~~l~~p~~ 202 (602)
.+.+||.|...+..++...+....+.
T Consensus 312 ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv~ 391 (822)
T COG0653 312 EVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVVV 391 (822)
T ss_pred eEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCceee
Confidence 11223333222222222222222222
Q ss_pred EecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhh-cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHH
Q 007481 203 LSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK-TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQ 281 (602)
Q Consensus 203 ~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~-~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~e 281 (602)
+....+..+. ...-.+.......-.+++..++.. ..+.|+||-+.++...+.++..|...|++..+|...-. .
T Consensus 392 iPTnrp~~R~----D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~ 465 (822)
T COG0653 392 IPTNRPIIRL----DEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--A 465 (822)
T ss_pred ccCCCcccCC----CCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--H
Confidence 2111111111 111111111222333445555543 45789999999999999999999999999888877555 3
Q ss_pred HHHHHHHHhcCCceEEEEcCccccccCcC---Cc--------cEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecC
Q 007481 282 RLEALELFRKQHVDFLIATDVAARGLDII---GV--------QTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 350 (602)
Q Consensus 282 R~~il~~F~~g~~~iLVaT~~~~~GlDip---~v--------~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~ 350 (602)
++.-+-.+.--.--|-|||+++++|-||. +. -+||-..--.|...--|-.||+||.|.+|.+..|++-.
T Consensus 466 ~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSle 545 (822)
T COG0653 466 REAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLE 545 (822)
T ss_pred HHHHHHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhH
Confidence 33333333322334679999999999993 21 24666665667777779999999999999999888876
Q ss_pred cHHH
Q 007481 351 DRSL 354 (602)
Q Consensus 351 d~~~ 354 (602)
|.-+
T Consensus 546 D~L~ 549 (822)
T COG0653 546 DDLM 549 (822)
T ss_pred HHHH
Confidence 5433
No 166
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.29 E-value=1.6e-11 Score=109.23 Aligned_cols=136 Identities=21% Similarity=0.230 Sum_probs=81.4
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 114 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~ 114 (602)
|+-.++-.++|+|||.-.+--++...+.+ +.++|||.|||.++..+++.++.. ++++. ..-...
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~-----~~rvLvL~PTRvva~em~~aL~~~----~~~~~--t~~~~~----- 67 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKR-----RLRVLVLAPTRVVAEEMYEALKGL----PVRFH--TNARMR----- 67 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHT-----T--EEEEESSHHHHHHHHHHTTTS----SEEEE--STTSS------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHc-----cCeEEEecccHHHHHHHHHHHhcC----CcccC--ceeeec-----
Confidence 44567899999999986544455544443 347999999999999888877632 33222 111110
Q ss_pred HHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC--cHHHHHHHHHhCCCCcceeeeeccCChhHH
Q 007481 115 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG--FSAEIHELVRLCPKRRQTMLFSATLTEDVD 190 (602)
Q Consensus 115 ~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g--f~~~i~~i~~~~~~~~q~il~SAT~~~~~~ 190 (602)
...++.-|-|+|...+...+.+ ...+.++++||+||||..-... +.-.+.++... ....+|++|||||....
T Consensus 68 ~~~g~~~i~vMc~at~~~~~~~--p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~--g~~~~i~mTATPPG~~~ 141 (148)
T PF07652_consen 68 THFGSSIIDVMCHATYGHFLLN--PCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES--GEAKVIFMTATPPGSED 141 (148)
T ss_dssp ---SSSSEEEEEHHHHHHHHHT--SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT--TS-EEEEEESS-TT---
T ss_pred cccCCCcccccccHHHHHHhcC--cccccCccEEEEeccccCCHHHHhhheeHHHhhhc--cCeeEEEEeCCCCCCCC
Confidence 1235567899999999888876 4557899999999999854432 22222222221 23578999999996653
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.18 E-value=3.1e-10 Score=115.99 Aligned_cols=76 Identities=28% Similarity=0.291 Sum_probs=59.9
Q ss_pred CCCCCCcHHHHH----HHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHH
Q 007481 16 LGYSKPTPIQAA----CIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 91 (602)
Q Consensus 16 ~g~~~pt~~Q~~----~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~ 91 (602)
+.|. |+|.|.+ ++..+..|.++++.||||+|||+++++|++..+........+.+++|+++|..+..|....++.
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 4565 6999999 4455556899999999999999999999988776543321234799999999998888777765
Q ss_pred H
Q 007481 92 I 92 (602)
Q Consensus 92 l 92 (602)
+
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 4
No 168
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.18 E-value=3.1e-10 Score=115.99 Aligned_cols=76 Identities=28% Similarity=0.291 Sum_probs=59.9
Q ss_pred CCCCCCcHHHHH----HHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHH
Q 007481 16 LGYSKPTPIQAA----CIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 91 (602)
Q Consensus 16 ~g~~~pt~~Q~~----~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~ 91 (602)
+.|. |+|.|.+ ++..+..|.++++.||||+|||+++++|++..+........+.+++|+++|..+..|....++.
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 4565 6999999 4455556899999999999999999999988776543321234799999999998888777765
Q ss_pred H
Q 007481 92 I 92 (602)
Q Consensus 92 l 92 (602)
+
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 4
No 169
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.97 E-value=7e-08 Score=104.63 Aligned_cols=134 Identities=21% Similarity=0.293 Sum_probs=105.8
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhhcCC------------------ceeeccCCCCHHHHHHHHHHHhcC---CceEEEEcC
Q 007481 243 TSKVIIFSGTKQAAHRLKILFGLAAL------------------KAAELHGNLTQAQRLEALELFRKQ---HVDFLIATD 301 (602)
Q Consensus 243 ~~kvIIF~~s~~~a~~l~~~L~~~g~------------------~~~~lhg~~~~~eR~~il~~F~~g---~~~iLVaT~ 301 (602)
+.++|||..+.-....+.++|....+ +...+.|..+..+|+..+.+|++. .+-+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 46899999999999999999975432 345788999999999999999974 356889999
Q ss_pred ccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHh--cCcchhhhhhhhhh
Q 007481 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA--GSKLKSRIVAEQSI 376 (602)
Q Consensus 302 ~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~--~~~~~~~~~~~~~~ 376 (602)
+...|||+-..+-+|+||+-|++.--.|.+.|+-|.|....|+++---.|..+-+.|-.+. +..+..+++++...
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~np 875 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDANP 875 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhcccCc
Confidence 9999999999999999999999999999999999999887777775555555555543322 23455566665443
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.86 E-value=6.7e-08 Score=96.59 Aligned_cols=132 Identities=26% Similarity=0.350 Sum_probs=98.5
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 15 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 15 ~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
.+|+ .|++.|.-++-.+..|+ |+...||-|||++..+|+....+. |..|=|++.+..||..=++++..+..
T Consensus 73 ~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~------G~~V~vvT~NdyLA~RD~~~~~~~y~ 143 (266)
T PF07517_consen 73 TLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ------GKGVHVVTSNDYLAKRDAEEMRPFYE 143 (266)
T ss_dssp HTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT------SS-EEEEESSHHHHHHHHHHHHHHHH
T ss_pred HcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh------cCCcEEEeccHHHhhccHHHHHHHHH
Confidence 4554 59999999987776666 999999999999888887766553 34589999999999999999999999
Q ss_pred cCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHH-HHHHHccCCC-----CCCCcceEEEeCccccc
Q 007481 95 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSV-----DLDDLAVLILDEADRLL 157 (602)
Q Consensus 95 ~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L-~~~l~~~~~~-----~l~~l~llVlDEah~l~ 157 (602)
+.|++++.++++.+........ .++|+.+|...| .|+|+..... ....+.++||||||.++
T Consensus 144 ~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 144 FLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999999999988754433333 358999998887 4677653222 14678899999999765
No 171
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.74 E-value=6.5e-08 Score=106.63 Aligned_cols=311 Identities=17% Similarity=0.189 Sum_probs=178.7
Q ss_pred HHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCC
Q 007481 29 IPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 108 (602)
Q Consensus 29 i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~ 108 (602)
+..+..+.-+++.+.||.|||.-+.--+|+.++.+.... -.-+.+--|++..+.-+.+.+-.-. .-.++-.+|-..
T Consensus 387 ~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~-~~na~v~qprrisaisiaerva~er---~e~~g~tvgy~v 462 (1282)
T KOG0921|consen 387 LQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGA-SFNAVVSQPRRISAISLAERVANER---GEEVGETCGYNV 462 (1282)
T ss_pred HHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccc-cccceeccccccchHHHHHHHHHhh---HHhhcccccccc
Confidence 344444667779999999999988888888888765531 1236777788887776665543311 111122222111
Q ss_pred HHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccC-CcHHHHHHHHHhCCCCcceeeeeccCCh
Q 007481 109 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLTE 187 (602)
Q Consensus 109 ~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~-gf~~~i~~i~~~~~~~~q~il~SAT~~~ 187 (602)
.. ....-...--|+.+|-+.++..+.+. +..+.++|+||.|..--. .|...+..=+.-......++++|||+..
T Consensus 463 Rf-~Sa~prpyg~i~fctvgvllr~~e~g----lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatIdT 537 (1282)
T KOG0921|consen 463 RF-DSATPRPYGSIMFCTVGVLLRMMENG----LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATIDT 537 (1282)
T ss_pred cc-cccccccccceeeeccchhhhhhhhc----ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccch
Confidence 00 00001122368999999999988764 455779999999974322 2333222222222334444555555432
Q ss_pred hHH--------------------HHHHHhcCCCeEEecCCCCCCCCCc----eeee---------eeec-----------
Q 007481 188 DVD--------------------ELIKLSLTKPLRLSADPSAKRPSTL----TEEV---------VRIR----------- 223 (602)
Q Consensus 188 ~~~--------------------~l~~~~l~~p~~~~~~~~~~~~~~l----~~~~---------~~~~----------- 223 (602)
+.. .+....+..++.............. .+.. ..+.
T Consensus 538 d~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am 617 (1282)
T KOG0921|consen 538 DLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAM 617 (1282)
T ss_pred hhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhh
Confidence 211 1111111111111110000000000 0000 0000
Q ss_pred --hhh----hhhHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhc-------CCceeeccCCCCHHHHHHHHHHHh
Q 007481 224 --RMR----EVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA-------ALKAAELHGNLTQAQRLEALELFR 290 (602)
Q Consensus 224 --~~~----~~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~-------g~~~~~lhg~~~~~eR~~il~~F~ 290 (602)
... ...-...+..+......+-++||.+-....-.|..+|... .+.+.-+|+.+...+..++.+...
T Consensus 618 ~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p 697 (1282)
T KOG0921|consen 618 SRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVP 697 (1282)
T ss_pred hcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCccc
Confidence 000 0001122233333455678999999998888887766533 356778899888888888888888
Q ss_pred cCCceEEEEcCccccccCcCCccEEEEcCCC------------------CChhhHHHHhhhcccCCCcceEEEEEec
Q 007481 291 KQHVDFLIATDVAARGLDIIGVQTVINYACP------------------RDLTSYVHRVGRTARAGREGYAVTFVTD 349 (602)
Q Consensus 291 ~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p------------------~s~~~yiQriGRa~R~g~~g~~i~l~~~ 349 (602)
.|..+++++|+.+...+-+.++..||+.+.- .|....+||.||++| -+.|.|..+++.
T Consensus 698 ~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~gr-vR~G~~f~lcs~ 773 (1282)
T KOG0921|consen 698 EGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGR-VRPGFCFHLCSR 773 (1282)
T ss_pred ccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCce-ecccccccccHH
Confidence 8999999999999999999887777743221 266778999999999 478888887654
No 172
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.56 E-value=2.3e-06 Score=98.06 Aligned_cols=69 Identities=20% Similarity=0.131 Sum_probs=55.3
Q ss_pred CCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeeccCCh
Q 007481 118 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 187 (602)
Q Consensus 118 ~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SAT~~~ 187 (602)
....|+++||..|..=+-.. .++++.+..|||||||++....-...+..+++...+..-+.+|||.|..
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~-ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTG-IIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred hcCCEEEEechhhHhHHhcC-CCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 44579999999986555442 5889999999999999998776666677777777777889999999853
No 173
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.53 E-value=9.5e-07 Score=101.40 Aligned_cols=70 Identities=19% Similarity=0.281 Sum_probs=53.7
Q ss_pred CceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccC-----CC----cceEE-EEEecCcHHHHHHHHHHh
Q 007481 293 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA-----GR----EGYAV-TFVTDNDRSLLKAIAKRA 362 (602)
Q Consensus 293 ~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~-----g~----~g~~i-~l~~~~d~~~l~~i~~~~ 362 (602)
.+.+|++-+++.+|.|-|++-+++-+....|...-.|.+||.-|. |. ....+ ++++.+...+...+.+.+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 678999999999999999999999999888999999999999883 21 11223 335566666766665544
No 174
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.52 E-value=5e-06 Score=92.22 Aligned_cols=71 Identities=21% Similarity=0.327 Sum_probs=57.2
Q ss_pred CCceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccC--CCcce-----------EEEEEecCcHHHHHHH
Q 007481 292 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA--GREGY-----------AVTFVTDNDRSLLKAI 358 (602)
Q Consensus 292 g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~--g~~g~-----------~i~l~~~~d~~~l~~i 358 (602)
...++|.+-.++.+|.|-|+|=+++-+....|..+=.|.+||.-|. +..|. -.++++.++..++..+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 3578999999999999999999999999999999999999999883 33333 2345677777788777
Q ss_pred HHHh
Q 007481 359 AKRA 362 (602)
Q Consensus 359 ~~~~ 362 (602)
.+..
T Consensus 562 qkEI 565 (985)
T COG3587 562 QKEI 565 (985)
T ss_pred HHHH
Confidence 6543
No 175
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.51 E-value=3.2e-05 Score=86.40 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=49.4
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhhcC-------CceeeccCCCCHHHHHHHHHHHhc--------CCceEEEEcCcccccc
Q 007481 243 TSKVIIFSGTKQAAHRLKILFGLAA-------LKAAELHGNLTQAQRLEALELFRK--------QHVDFLIATDVAARGL 307 (602)
Q Consensus 243 ~~kvIIF~~s~~~a~~l~~~L~~~g-------~~~~~lhg~~~~~eR~~il~~F~~--------g~~~iLVaT~~~~~Gl 307 (602)
...+|||+++....+.+..+....+ ++-..+-- -+..+=.+++..|-+ |.+-+.||---+++||
T Consensus 561 p~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEP-r~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGl 639 (945)
T KOG1132|consen 561 PYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEP-RSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGL 639 (945)
T ss_pred ccceEEeccchHHHHHHHHHHHcchHHHHhhcccCceecc-CCccchHHHHHHHHHHhhCccccceEEEEEecccccCCC
Confidence 4559999999998888866665432 22211111 122233344555543 3344567778899999
Q ss_pred CcCC--ccEEEEcCCCC
Q 007481 308 DIIG--VQTVINYACPR 322 (602)
Q Consensus 308 Dip~--v~~VI~~d~p~ 322 (602)
|+.+ .+.||..++|.
T Consensus 640 DFsD~~~RaVI~tGlPy 656 (945)
T KOG1132|consen 640 DFSDDNGRAVIITGLPY 656 (945)
T ss_pred CccccCCceeEEecCCC
Confidence 9954 67889888873
No 176
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.51 E-value=2e-08 Score=112.64 Aligned_cols=260 Identities=18% Similarity=0.219 Sum_probs=150.6
Q ss_pred CCcHHHHHHHHHHhc-CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCc
Q 007481 20 KPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI 98 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~-g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i 98 (602)
...|+|.+.+..+.. ..++++.+|||+|||++|.+.++..+.+. ++.++++++|..+|+..-.+.+.......++
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~----p~~kvvyIap~kalvker~~Dw~~r~~~~g~ 1002 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY----PGSKVVYIAPDKALVKERSDDWSKRDELPGI 1002 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC----CCccEEEEcCCchhhcccccchhhhcccCCc
Confidence 344566655544443 57899999999999999999988776654 3458999999999987766665554444588
Q ss_pred eEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCC-CCCCcceEEEeCccccccC-CcH-----HHHHHHHHh
Q 007481 99 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSV-DLDDLAVLILDEADRLLEL-GFS-----AEIHELVRL 171 (602)
Q Consensus 99 ~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~-~l~~l~llVlDEah~l~~~-gf~-----~~i~~i~~~ 171 (602)
++.-+.|+...... -...++|+|+||+++..+.+++... .+.+++++|+||.|.+.+. |.. .....+-.+
T Consensus 1003 k~ie~tgd~~pd~~---~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~~ 1079 (1230)
T KOG0952|consen 1003 KVIELTGDVTPDVK---AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISSQ 1079 (1230)
T ss_pred eeEeccCccCCChh---heecCceEEcccccccCccccccchhhhccccceeecccccccCCCcceEEEEeeccccCccc
Confidence 88888888665422 2356799999999999988854333 3678899999999987654 211 111112233
Q ss_pred CCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeee------eeechhhhhhHHHHHHHHhhhcCCCe
Q 007481 172 CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV------VRIRRMREVNQEAVLLSLCSKTFTSK 245 (602)
Q Consensus 172 ~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~k~~~l~~l~~~~~~~k 245 (602)
.+...+.+++|.-+. +..++++..-..+. +.+. +..+|..+...+ ..++.....+ ...+..+....+..+
T Consensus 1080 t~~~vr~~glsta~~-na~dla~wl~~~~~-~nf~-~svrpvp~~~~i~gfp~~~~cprm~smn-kpa~qaik~~sp~~p 1155 (1230)
T KOG0952|consen 1080 TEEPVRYLGLSTALA-NANDLADWLNIKDM-YNFR-PSVRPVPLEVHIDGFPGQHYCPRMMSMN-KPAFQAIKTHSPIKP 1155 (1230)
T ss_pred cCcchhhhhHhhhhh-ccHHHHHHhCCCCc-CCCC-cccccCCceEeecCCCchhcchhhhhcc-cHHHHHHhcCCCCCc
Confidence 344455555554332 22233332222222 2111 112232222222 1222222222 233444545566789
Q ss_pred EEEEeCcHHHHHHH----HHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC
Q 007481 246 VIIFSGTKQAAHRL----KILFGLAALKAAELHGNLTQAQRLEALELFRKQ 292 (602)
Q Consensus 246 vIIF~~s~~~a~~l----~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g 292 (602)
+|||+.++.....- ...+....-+...++.+ ..+-+-++...++.
T Consensus 1156 ~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~d--e~e~e~~~~~~~d~ 1204 (1230)
T KOG0952|consen 1156 VLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMD--ELELEIIMSKVRDT 1204 (1230)
T ss_pred eEEEeecccccccchHhHHhhccCCCCchhccCCC--HHHHHHHHHHhccc
Confidence 99999887654433 33332222233444443 44444555555543
No 177
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.46 E-value=5.4e-07 Score=101.06 Aligned_cols=101 Identities=15% Similarity=0.145 Sum_probs=89.7
Q ss_pred eEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC-CceE-EEEcCccccccCcCCccEEEEcCCCC
Q 007481 245 KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ-HVDF-LIATDVAARGLDIIGVQTVINYACPR 322 (602)
Q Consensus 245 kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g-~~~i-LVaT~~~~~GlDip~v~~VI~~d~p~ 322 (602)
++|||+.-...+..+...|...++....+.|.|+...|...+..|..+ ...+ |++..++..||++-.+.+|+..|+-|
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 899999999999999999998899999999999999999999999954 3333 57789999999999999999999999
Q ss_pred ChhhHHHHhhhcccCCCcceEEE
Q 007481 323 DLTSYVHRVGRTARAGREGYAVT 345 (602)
Q Consensus 323 s~~~yiQriGRa~R~g~~g~~i~ 345 (602)
|+...-|.+-|++|.|..-.+.+
T Consensus 621 np~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred ChHHHHHHHHHHHHhcccceeee
Confidence 99999999999999986544433
No 178
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.39 E-value=4e-06 Score=82.53 Aligned_cols=71 Identities=21% Similarity=0.281 Sum_probs=50.4
Q ss_pred CCcHHHHHHHHHHhcCCC-EEEEcCCCchHHHHHHHHHHHHHHcC---CCCCCCcEEEEEcChHHHHHHHHHHHHH
Q 007481 20 KPTPIQAACIPLALTGRD-ICGSAITGSGKTAAFALPTLERLLYR---PKRIPAIRVLILTPTRELAVQVHSMIEK 91 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~g~d-vii~a~TGSGKT~a~~l~il~~l~~~---~~~~~~~~vLiL~Ptr~La~Q~~~~~~~ 91 (602)
++.+.|.+||..++.... .+|.||+|+|||.+ +..++..+..+ .....+.++|+++|+...+.++.+.+..
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999988 89999999999965 34455555211 0112455799999999999999888776
No 179
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.29 E-value=2.8e-06 Score=79.77 Aligned_cols=106 Identities=17% Similarity=0.206 Sum_probs=72.4
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCC--ceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC--ccccccCcCC--ccEE
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGLAAL--KAAELHGNLTQAQRLEALELFRKQHVDFLIATD--VAARGLDIIG--VQTV 315 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~~g~--~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~--~~~~GlDip~--v~~V 315 (602)
.++++|||++|....+.+...+..... ....+.. ...++..+++.|+.+.-.||+++. .+.+|+|+++ +++|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 358999999999999999999986642 1222222 355778999999999999999998 9999999986 7889
Q ss_pred EEcCCCCC-h-----------------------------hhHHHHhhhcccCCCcceEEEEEec
Q 007481 316 INYACPRD-L-----------------------------TSYVHRVGRTARAGREGYAVTFVTD 349 (602)
Q Consensus 316 I~~d~p~s-~-----------------------------~~yiQriGRa~R~g~~g~~i~l~~~ 349 (602)
|...+|.. + ....|.+||+-|...+--++++++.
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 99888841 1 1224889999996655445555554
No 180
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.20 E-value=6.9e-06 Score=79.23 Aligned_cols=123 Identities=25% Similarity=0.250 Sum_probs=71.1
Q ss_pred CCcHHHHHHHHHHhcCC--CEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCC
Q 007481 20 KPTPIQAACIPLALTGR--DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 97 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~g~--dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~ 97 (602)
++++-|.+++..++.+. -+++.|+.|+|||.+ +..+...+... +.++++++||...+..+.+.. +
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~-----g~~v~~~apT~~Aa~~L~~~~-------~ 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAA-----GKRVIGLAPTNKAAKELREKT-------G 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHT-----T--EEEEESSHHHHHHHHHHH-------T
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhC-----CCeEEEECCcHHHHHHHHHhh-------C
Confidence 47899999999998654 466889999999975 34455444442 347999999999887655441 1
Q ss_pred ceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccC---CCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCC
Q 007481 98 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM---SVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK 174 (602)
Q Consensus 98 i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~---~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~ 174 (602)
+.+ .|-..++....... ...+...++||||||-.+. ...+..++..++.
T Consensus 68 ~~a------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 68 IEA------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLAKK 119 (196)
T ss_dssp S-E------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS-T
T ss_pred cch------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHHHh
Confidence 211 12111111111000 0114556799999999864 3456677777766
Q ss_pred -Ccceeeeec
Q 007481 175 -RRQTMLFSA 183 (602)
Q Consensus 175 -~~q~il~SA 183 (602)
..++|++.=
T Consensus 120 ~~~klilvGD 129 (196)
T PF13604_consen 120 SGAKLILVGD 129 (196)
T ss_dssp -T-EEEEEE-
T ss_pred cCCEEEEECC
Confidence 455555443
No 181
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.06 E-value=4.7e-05 Score=82.33 Aligned_cols=85 Identities=19% Similarity=0.142 Sum_probs=68.2
Q ss_pred HHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHH
Q 007481 12 ACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 91 (602)
Q Consensus 12 ~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~ 91 (602)
.+...|++.+..-|..|+.++|+..-.||.+|+|+|||.+- ..|+.++... .+.+|||.+|+...++|+++-+.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvts-a~IVyhl~~~----~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ----HAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehh-HHHHHHHHHh----cCCceEEEcccchhHHHHHHHHHh
Confidence 44566899999999999999999999999999999999763 5555566554 334699999999999999888876
Q ss_pred HhhcCCceEEEEEC
Q 007481 92 IAQFTDIRCCLVVG 105 (602)
Q Consensus 92 l~~~~~i~v~~~~g 105 (602)
++++|.-+..
T Consensus 477 ----tgLKVvRl~a 486 (935)
T KOG1802|consen 477 ----TGLKVVRLCA 486 (935)
T ss_pred ----cCceEeeeeh
Confidence 3566665553
No 182
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.04 E-value=4e-05 Score=77.13 Aligned_cols=161 Identities=19% Similarity=0.154 Sum_probs=104.3
Q ss_pred CCcHHHHHHHHHHhc----------CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHH
Q 007481 20 KPTPIQAACIPLALT----------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 89 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~----------g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~ 89 (602)
.++..|-+++-.+.+ ...+++...||.||.-...-.|++.++...+ +.|+|..+..|.....+.+
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~-----r~vwvS~s~dL~~Da~RDl 111 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRK-----RAVWVSVSNDLKYDAERDL 111 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCC-----ceEEEECChhhhhHHHHHH
Confidence 468899999866642 3578899999999997655667777765432 5899999999988888888
Q ss_pred HHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCC--CCC---------CCcceEEEeCcccccc
Q 007481 90 EKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS--VDL---------DDLAVLILDEADRLLE 158 (602)
Q Consensus 90 ~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~--~~l---------~~l~llVlDEah~l~~ 158 (602)
+.+... .+.+..+..-.. . ....-...|+++|+..|......... ..+ +.-.+|||||||.+.+
T Consensus 112 ~DIG~~-~i~v~~l~~~~~-~---~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn 186 (303)
T PF13872_consen 112 RDIGAD-NIPVHPLNKFKY-G---DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKN 186 (303)
T ss_pred HHhCCC-cccceechhhcc-C---cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCC
Confidence 876433 333333322100 0 01123457999999998876532111 010 1224899999999876
Q ss_pred CCc--------HHHHHHHHHhCCCCcceeeeeccCChhHHH
Q 007481 159 LGF--------SAEIHELVRLCPKRRQTMLFSATLTEDVDE 191 (602)
Q Consensus 159 ~gf--------~~~i~~i~~~~~~~~q~il~SAT~~~~~~~ 191 (602)
..- ...+..+...+|.. +++++|||-..+...
T Consensus 187 ~~~~~~~~sk~g~avl~LQ~~LP~A-RvvY~SATgasep~N 226 (303)
T PF13872_consen 187 LSSGSKKPSKTGIAVLELQNRLPNA-RVVYASATGASEPRN 226 (303)
T ss_pred CCccCccccHHHHHHHHHHHhCCCC-cEEEecccccCCCce
Confidence 532 13455566667654 599999998655443
No 183
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.99 E-value=6.6e-05 Score=83.95 Aligned_cols=143 Identities=20% Similarity=0.208 Sum_probs=87.4
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEE
Q 007481 22 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCC 101 (602)
Q Consensus 22 t~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~ 101 (602)
.++|+.++..++.++-++|.|+.|+|||.+ +..++..+..........++++.+||.--|..+.+.+.......+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~-- 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTT-VARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA-- 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc--
Confidence 479999999999999999999999999975 34444444322111112479999999998888777665432111110
Q ss_pred EEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCC-----CCCCCcceEEEeCccccccCCcHHHHHHHHHhCCCCc
Q 007481 102 LVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS-----VDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 176 (602)
Q Consensus 102 ~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~-----~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~ 176 (602)
. .+.....+-..|-.+|+........ -..-.+++||||||-++. ...+..++..++...
T Consensus 224 -------~-----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~~ 287 (586)
T TIGR01447 224 -------E-----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPNT 287 (586)
T ss_pred -------h-----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCCC
Confidence 0 0001111224454444433221100 122357899999999764 345667788888888
Q ss_pred ceeeeec
Q 007481 177 QTMLFSA 183 (602)
Q Consensus 177 q~il~SA 183 (602)
++|++.=
T Consensus 288 rlIlvGD 294 (586)
T TIGR01447 288 KLILLGD 294 (586)
T ss_pred EEEEECC
Confidence 8776653
No 184
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.97 E-value=1.1e-05 Score=77.63 Aligned_cols=145 Identities=17% Similarity=0.125 Sum_probs=72.6
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHH-------HHHHHHH
Q 007481 20 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV-------HSMIEKI 92 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~-------~~~~~~l 92 (602)
-.|+.|..++.+++...-+++.||.|||||+.++..+++.+... .-.+++|+-|..+....+ .+-+.-|
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g----~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG----EYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT----S-SEEEEEE-S--TT----SS---------TT
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC----CCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 35889999999999888888999999999998888888777653 233688888876541110 0000000
Q ss_pred hhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhC
Q 007481 93 AQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172 (602)
Q Consensus 93 ~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~ 172 (602)
.....-....+.+... ...+.....|-+.++..+ + ..+++ -.+||||||+.+. ...+..++..+
T Consensus 80 ~~p~~d~l~~~~~~~~----~~~~~~~~~Ie~~~~~~i----R---Grt~~-~~~iIvDEaQN~t----~~~~k~ilTR~ 143 (205)
T PF02562_consen 80 LRPIYDALEELFGKEK----LEELIQNGKIEIEPLAFI----R---GRTFD-NAFIIVDEAQNLT----PEELKMILTRI 143 (205)
T ss_dssp THHHHHHHTTTS-TTC----HHHHHHTTSEEEEEGGGG----T---T--B--SEEEEE-SGGG------HHHHHHHHTTB
T ss_pred HHHHHHHHHHHhChHh----HHHHhhcCeEEEEehhhh----c---Ccccc-ceEEEEecccCCC----HHHHHHHHccc
Confidence 0000000000001111 111223345555554333 1 12232 2699999999874 45788888888
Q ss_pred CCCcceeeeecc
Q 007481 173 PKRRQTMLFSAT 184 (602)
Q Consensus 173 ~~~~q~il~SAT 184 (602)
..+.+++++.-.
T Consensus 144 g~~skii~~GD~ 155 (205)
T PF02562_consen 144 GEGSKIIITGDP 155 (205)
T ss_dssp -TT-EEEEEE--
T ss_pred CCCcEEEEecCc
Confidence 877777766543
No 185
>PRK10536 hypothetical protein; Provisional
Probab=97.95 E-value=0.00014 Score=72.09 Aligned_cols=143 Identities=17% Similarity=0.220 Sum_probs=80.4
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHH-----------HHH
Q 007481 17 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA-----------VQV 85 (602)
Q Consensus 17 g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La-----------~Q~ 85 (602)
++.-.+..|...+.++..+..+++.||+|+|||+.+....++.+... .-.+++|.=|+.+.. +-.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~----~~~kIiI~RP~v~~ge~LGfLPG~~~eK~ 131 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK----DVDRIIVTRPVLQADEDLGFLPGDIAEKF 131 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC----CeeEEEEeCCCCCchhhhCcCCCCHHHHH
Confidence 34445788999999888888888999999999987666566555432 123466665664321 112
Q ss_pred HHHHHHHhhcCCceEEEEECCCCHHHHHHHHc-CCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHH
Q 007481 86 HSMIEKIAQFTDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAE 164 (602)
Q Consensus 86 ~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~-~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~ 164 (602)
..++..+...... +.|. ......+. ....|-|.. +.+++.. +++ -++||||||+++. ...
T Consensus 132 ~p~~~pi~D~L~~----~~~~---~~~~~~~~~~~~~Iei~~----l~ymRGr---tl~-~~~vIvDEaqn~~----~~~ 192 (262)
T PRK10536 132 APYFRPVYDVLVR----RLGA---SFMQYCLRPEIGKVEIAP----FAYMRGR---TFE-NAVVILDEAQNVT----AAQ 192 (262)
T ss_pred HHHHHHHHHHHHH----HhCh---HHHHHHHHhccCcEEEec----HHHhcCC---ccc-CCEEEEechhcCC----HHH
Confidence 2222222111110 1111 11111111 223455555 2334432 232 2689999999874 367
Q ss_pred HHHHHHhCCCCcceeeee
Q 007481 165 IHELVRLCPKRRQTMLFS 182 (602)
Q Consensus 165 i~~i~~~~~~~~q~il~S 182 (602)
+..++..+..+.++|++.
T Consensus 193 ~k~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 193 MKMFLTRLGENVTVIVNG 210 (262)
T ss_pred HHHHHhhcCCCCEEEEeC
Confidence 788888888777666543
No 186
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.94 E-value=0.00011 Score=82.43 Aligned_cols=143 Identities=20% Similarity=0.193 Sum_probs=88.8
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEE
Q 007481 22 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCC 101 (602)
Q Consensus 22 t~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~ 101 (602)
.++|+.|+-.++.++-++|.|++|+|||.+ +..++..+..... ....++++++||.--|..+.+.+.......++
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~-v~~ll~~l~~~~~-~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~--- 228 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTT-VAKLLAALIQLAD-GERCRIRLAAPTGKAAARLTESLGKALRQLPL--- 228 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHH-HHHHHHHHHHhcC-CCCcEEEEECCcHHHHHHHHHHHHhhhhcccc---
Confidence 589999999999999999999999999976 3444444433211 12357899999999998887776543221111
Q ss_pred EEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCC-----CCCCCcceEEEeCccccccCCcHHHHHHHHHhCCCCc
Q 007481 102 LVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS-----VDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 176 (602)
Q Consensus 102 ~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~-----~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~ 176 (602)
... +......-..|-.+|+........ .+.-.+++||||||-++- ...+..++..+++..
T Consensus 229 ------~~~-----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~~~ 293 (615)
T PRK10875 229 ------TDE-----QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPPHA 293 (615)
T ss_pred ------chh-----hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcccCC
Confidence 000 001111123444444433211110 122346899999999753 456677788888888
Q ss_pred ceeeeecc
Q 007481 177 QTMLFSAT 184 (602)
Q Consensus 177 q~il~SAT 184 (602)
++|++.=.
T Consensus 294 rlIlvGD~ 301 (615)
T PRK10875 294 RVIFLGDR 301 (615)
T ss_pred EEEEecch
Confidence 88877543
No 187
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.89 E-value=5.2e-05 Score=80.07 Aligned_cols=108 Identities=21% Similarity=0.258 Sum_probs=68.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHH
Q 007481 37 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 116 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l 116 (602)
-++|.|..|||||+++ +-++..+... ..+..++++|++..|...++..+..-. .
T Consensus 3 v~~I~G~aGTGKTvla-~~l~~~l~~~---~~~~~~~~l~~n~~l~~~l~~~l~~~~----------~------------ 56 (352)
T PF09848_consen 3 VILITGGAGTGKTVLA-LNLAKELQNS---EEGKKVLYLCGNHPLRNKLREQLAKKY----------N------------ 56 (352)
T ss_pred EEEEEecCCcCHHHHH-HHHHHHhhcc---ccCCceEEEEecchHHHHHHHHHhhhc----------c------------
Confidence 3679999999999874 5555555111 134468999999999988877776532 0
Q ss_pred cCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC-------cHHHHHHHHHh
Q 007481 117 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-------FSAEIHELVRL 171 (602)
Q Consensus 117 ~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g-------f~~~i~~i~~~ 171 (602)
.......+..|..++..+.. .......+++|||||||++...+ ....+..++..
T Consensus 57 ~~~~~~~~~~~~~~i~~~~~-~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 57 PKLKKSDFRKPTSFINNYSE-SDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred cchhhhhhhhhHHHHhhccc-ccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 01112344455555554431 12345678999999999998732 23556666655
No 188
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.88 E-value=5.5e-05 Score=81.52 Aligned_cols=64 Identities=20% Similarity=0.355 Sum_probs=50.2
Q ss_pred CCcHHHHHHHHHHhcCCC-EEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHH
Q 007481 20 KPTPIQAACIPLALTGRD-ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 89 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~g~d-vii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~ 89 (602)
.+.+-|.+|+..+.+.++ .++.||+|+|||... .-+++.+... +.+|||.+||.+-+..+.+.+
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~Tl-vEiI~qlvk~-----~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTL-VEIISQLVKQ-----KKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeH-HHHHHHHHHc-----CCeEEEEcCchHHHHHHHHHh
Confidence 567889999999999865 558999999999874 4445555543 347999999999988887754
No 189
>PF13245 AAA_19: Part of AAA domain
Probab=97.83 E-value=6.2e-05 Score=60.59 Aligned_cols=60 Identities=28% Similarity=0.386 Sum_probs=40.6
Q ss_pred HHHHHhcCC-CEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHH
Q 007481 28 CIPLALTGR-DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 89 (602)
Q Consensus 28 ~i~~~l~g~-dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~ 89 (602)
+|...+.+. -++|.||+|||||... +..+..+....... +.++||++||+..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~-~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTL-AARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHH-HHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 445444444 4556999999999664 44555554321111 457999999999999887776
No 190
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.80 E-value=0.00025 Score=81.56 Aligned_cols=128 Identities=19% Similarity=0.153 Sum_probs=79.2
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhc
Q 007481 16 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 95 (602)
Q Consensus 16 ~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~ 95 (602)
.+ ..+++-|.+++..++.++-+++.|+.|+|||.+. -.++..+.... ....+++++||...|..+.+.
T Consensus 320 ~~-~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~---~~~~v~l~ApTg~AA~~L~e~------- 387 (720)
T TIGR01448 320 LR-KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELG---GLLPVGLAAPTGRAAKRLGEV------- 387 (720)
T ss_pred cC-CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcC---CCceEEEEeCchHHHHHHHHh-------
Confidence 45 4699999999999999888999999999999752 34444333221 114688999998887654332
Q ss_pred CCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHcc----CCCCCCCcceEEEeCccccccCCcHHHHHHHHHh
Q 007481 96 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS----MSVDLDDLAVLILDEADRLLELGFSAEIHELVRL 171 (602)
Q Consensus 96 ~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~----~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~ 171 (602)
++... .|-.+|+...... ..-.....++||||||+++.. ..+..++..
T Consensus 388 ~g~~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~----~~~~~Ll~~ 439 (720)
T TIGR01448 388 TGLTA------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMDT----WLALSLLAA 439 (720)
T ss_pred cCCcc------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCCH----HHHHHHHHh
Confidence 12110 1111111110000 000123467999999998743 345666777
Q ss_pred CCCCcceeeeec
Q 007481 172 CPKRRQTMLFSA 183 (602)
Q Consensus 172 ~~~~~q~il~SA 183 (602)
++...++|++.=
T Consensus 440 ~~~~~rlilvGD 451 (720)
T TIGR01448 440 LPDHARLLLVGD 451 (720)
T ss_pred CCCCCEEEEECc
Confidence 887888777653
No 191
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.74 E-value=0.00031 Score=79.58 Aligned_cols=67 Identities=19% Similarity=0.290 Sum_probs=53.0
Q ss_pred CCCcHHHHHHHHHHhcC-CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHH
Q 007481 19 SKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 91 (602)
Q Consensus 19 ~~pt~~Q~~~i~~~l~g-~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~ 91 (602)
..+++.|.+++..++.. ..++|.||+|+|||.+. ..++..+... +.+||+++||...+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~-~~ii~~~~~~-----g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTL-VELIRQLVKR-----GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHH-HHHHHHHHHc-----CCCEEEEcCcHHHHHHHHHHHHh
Confidence 45799999999999986 56779999999999763 4444444432 33799999999999998887765
No 192
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.71 E-value=0.00022 Score=69.36 Aligned_cols=133 Identities=22% Similarity=0.249 Sum_probs=84.5
Q ss_pred CCcHHHHHHHHHHhc---CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh-c
Q 007481 20 KPTPIQAACIPLALT---GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ-F 95 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~---g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~-~ 95 (602)
.++|.|.+.+..+.+ |.|.+...-+|.|||.+ ++|++..++..... -|.+++|. +|..|..+.+..-.. .
T Consensus 23 liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~----LvrviVpk-~Ll~q~~~~L~~~lg~l 96 (229)
T PF12340_consen 23 LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSR----LVRVIVPK-ALLEQMRQMLRSRLGGL 96 (229)
T ss_pred eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCc----EEEEEcCH-HHHHHHHHHHHHHHHHH
Confidence 489999999999986 58999999999999987 69999888865442 36677776 588888887765332 2
Q ss_pred CCceEEEEE--CCCCHHH----H----HHHHcCCCcEEEECcHHHHHHHHcc------CCC-----------CCCCcceE
Q 007481 96 TDIRCCLVV--GGLSTKM----Q----ETALRSMPDIVVATPGRMIDHLRNS------MSV-----------DLDDLAVL 148 (602)
Q Consensus 96 ~~i~v~~~~--g~~~~~~----~----~~~l~~~~~IvI~Tp~~L~~~l~~~------~~~-----------~l~~l~ll 148 (602)
.+-.+..+- -...... . .......-.|+++||+.++.+.-.. ... -++....=
T Consensus 97 ~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rd 176 (229)
T PF12340_consen 97 LNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRD 176 (229)
T ss_pred hCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCe
Confidence 333332222 1111110 0 1112344579999999986643211 000 02233456
Q ss_pred EEeCcccccc
Q 007481 149 ILDEADRLLE 158 (602)
Q Consensus 149 VlDEah~l~~ 158 (602)
|+||+|.++.
T Consensus 177 ilDEsDe~L~ 186 (229)
T PF12340_consen 177 ILDESDEILS 186 (229)
T ss_pred EeECchhccC
Confidence 8999997665
No 193
>PRK08181 transposase; Validated
Probab=97.46 E-value=0.0038 Score=63.07 Aligned_cols=130 Identities=17% Similarity=0.206 Sum_probs=70.7
Q ss_pred HHHHCCCCC---CcHHHHHHHH----HHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHH
Q 007481 12 ACEALGYSK---PTPIQAACIP----LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 84 (602)
Q Consensus 12 ~l~~~g~~~---pt~~Q~~~i~----~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q 84 (602)
.++++.|.. +...|..++. ++-.+.++++.||+|+|||..+ ..+...+... +..| +.++..+|..+
T Consensus 76 tle~fd~~~~~~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa-~Aia~~a~~~-----g~~v-~f~~~~~L~~~ 148 (269)
T PRK08181 76 TLDSFDFEAVPMVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLA-AAIGLALIEN-----GWRV-LFTRTTDLVQK 148 (269)
T ss_pred CHhhCCccCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHH-HHHHHHHHHc-----CCce-eeeeHHHHHHH
Confidence 445554443 3566766663 3446789999999999999653 3333334332 2234 44455666555
Q ss_pred HHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCc-HH
Q 007481 85 VHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF-SA 163 (602)
Q Consensus 85 ~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf-~~ 163 (602)
+..... . .+...++..+. ..++|||||.+......+ ..
T Consensus 149 l~~a~~------~---------------------------~~~~~~l~~l~--------~~dLLIIDDlg~~~~~~~~~~ 187 (269)
T PRK08181 149 LQVARR------E---------------------------LQLESAIAKLD--------KFDLLILDDLAYVTKDQAETS 187 (269)
T ss_pred HHHHHh------C---------------------------CcHHHHHHHHh--------cCCEEEEeccccccCCHHHHH
Confidence 432110 0 02222333332 356999999997654332 33
Q ss_pred HHHHHHHhCCCCcceeeeeccCChhH
Q 007481 164 EIHELVRLCPKRRQTMLFSATLTEDV 189 (602)
Q Consensus 164 ~i~~i~~~~~~~~q~il~SAT~~~~~ 189 (602)
.+.+++........+|+.|-.++.+.
T Consensus 188 ~Lf~lin~R~~~~s~IiTSN~~~~~w 213 (269)
T PRK08181 188 VLFELISARYERRSILITANQPFGEW 213 (269)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCHHHH
Confidence 45555554433445666666555443
No 194
>PRK06526 transposase; Provisional
Probab=97.43 E-value=0.0025 Score=64.00 Aligned_cols=45 Identities=18% Similarity=0.074 Sum_probs=27.4
Q ss_pred CcceEEEeCccccccCCc-HHHHHHHHHhCCCCcceeeeeccCChh
Q 007481 144 DLAVLILDEADRLLELGF-SAEIHELVRLCPKRRQTMLFSATLTED 188 (602)
Q Consensus 144 ~l~llVlDEah~l~~~gf-~~~i~~i~~~~~~~~q~il~SAT~~~~ 188 (602)
.+++|||||+|.+..... ...+..++........+|+.|..++..
T Consensus 159 ~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~ 204 (254)
T PRK06526 159 RYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGR 204 (254)
T ss_pred cCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHH
Confidence 367999999998653322 234455554333334577777777654
No 195
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.37 E-value=0.003 Score=73.05 Aligned_cols=75 Identities=15% Similarity=0.074 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHH
Q 007481 5 LSRPLLRACEALGYSKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 83 (602)
Q Consensus 5 L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g-~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~ 83 (602)
+++..+...-..+ ..+++-|.+++..++.+ +-++|.|+.|+|||.+ +-.+.+.+.. .+.++++++||.-.+.
T Consensus 338 ~~~~~~~~~l~~~-~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~~~-----~g~~V~~~ApTg~Aa~ 410 (744)
T TIGR02768 338 VSPPIVDAAIDQH-YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAWEA-----AGYRVIGAALSGKAAE 410 (744)
T ss_pred CCHHHHHHHHhcc-CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHHHh-----CCCeEEEEeCcHHHHH
Confidence 4444444433334 34899999999999885 5667999999999975 2334333322 2457999999987765
Q ss_pred HHH
Q 007481 84 QVH 86 (602)
Q Consensus 84 Q~~ 86 (602)
.+.
T Consensus 411 ~L~ 413 (744)
T TIGR02768 411 GLQ 413 (744)
T ss_pred HHH
Confidence 543
No 196
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.29 E-value=3.2e-05 Score=86.16 Aligned_cols=65 Identities=23% Similarity=0.359 Sum_probs=58.3
Q ss_pred cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhc---CCceEEEEcCccccc
Q 007481 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK---QHVDFLIATDVAARG 306 (602)
Q Consensus 241 ~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~---g~~~iLVaT~~~~~G 306 (602)
..+++|+||.......+.+..++...+ ....+.|..+..+|..++..|+. ..+.+|++|.+.+.|
T Consensus 629 ~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 629 SSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred hcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 447899999999999999999999888 88899999999999999999993 377899999988765
No 197
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.29 E-value=0.00065 Score=70.04 Aligned_cols=124 Identities=23% Similarity=0.190 Sum_probs=75.9
Q ss_pred CcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceE
Q 007481 21 PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 100 (602)
Q Consensus 21 pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v 100 (602)
+|+-|.++|.. ...+++|.|+.|||||.+.+.-++..+... . .++.++|+|++|+..+..+.+.+..........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~-~-~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~- 75 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEG-G-VPPERILVLTFTNAAAQEMRERIRELLEEEQQE- 75 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTS-S-STGGGEEEEESSHHHHHHHHHHHHHHHHHCCHC-
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccc-c-CChHHheecccCHHHHHHHHHHHHHhcCccccc-
Confidence 57889999988 778999999999999988655555444333 2 355679999999999999988888754432110
Q ss_pred EEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCC-CCcceEEEeCcc
Q 007481 101 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDL-DDLAVLILDEAD 154 (602)
Q Consensus 101 ~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l-~~l~llVlDEah 154 (602)
................+.|+|-..+...+-+...... -.-.+-++|+..
T Consensus 76 -----~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 76 -----SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp -----CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred -----ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0000011122233457889998888665432111111 112456777776
No 198
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.28 E-value=0.0055 Score=64.59 Aligned_cols=131 Identities=21% Similarity=0.206 Sum_probs=66.8
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 114 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~ 114 (602)
|..+++.||||+|||+.. .-+...+..... ..++.+++ +...-.--.+.+..|+...++.+..
T Consensus 137 g~ii~lvGptGvGKTTti-akLA~~~~~~~G---~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~------------ 199 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTT-AKLAARCVMRFG---ASKVALLT-TDSYRIGGHEQLRIFGKILGVPVHA------------ 199 (374)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHHHHHhcC---CCeEEEEe-cccccccHHHHHHHHHHHcCCceEe------------
Confidence 567889999999999864 333333322211 11344443 2222111234556665555554332
Q ss_pred HHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC-cHHHHHHHHHhCCCCcceeeeeccCChhH-HHH
Q 007481 115 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-FSAEIHELVRLCPKRRQTMLFSATLTEDV-DEL 192 (602)
Q Consensus 115 ~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g-f~~~i~~i~~~~~~~~q~il~SAT~~~~~-~~l 192 (602)
+.+++.+...+.. +.+.++|+||.+-+..... ..+.+..+.........++.+|||...+. .+.
T Consensus 200 ---------~~~~~~l~~~l~~-----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ev 265 (374)
T PRK14722 200 ---------VKDGGDLQLALAE-----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEV 265 (374)
T ss_pred ---------cCCcccHHHHHHH-----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHH
Confidence 3344444333332 3345789999998654322 22333333222233344677899886543 444
Q ss_pred HHHh
Q 007481 193 IKLS 196 (602)
Q Consensus 193 ~~~~ 196 (602)
++.+
T Consensus 266 i~~f 269 (374)
T PRK14722 266 VQAY 269 (374)
T ss_pred HHHH
Confidence 4444
No 199
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.27 E-value=0.004 Score=73.28 Aligned_cols=125 Identities=18% Similarity=0.105 Sum_probs=74.9
Q ss_pred CCCCCCcHHHHHHHHHHhcCCC-EEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 16 LGYSKPTPIQAACIPLALTGRD-ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 16 ~g~~~pt~~Q~~~i~~~l~g~d-vii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
.|+ .+++-|.+++..++.+++ +++.|+.|+|||.+ +-.+.+.+ .. .+.+|+.++||--.+..+.+
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~-e~----~G~~V~~~ApTGkAA~~L~e------- 408 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAW-EA----AGYEVRGAALSGIAAENLEG------- 408 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHH-HH----cCCeEEEecCcHHHHHHHhh-------
Confidence 454 599999999999998765 56999999999975 33333333 22 35579999999877654422
Q ss_pred cCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhC-C
Q 007481 95 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC-P 173 (602)
Q Consensus 95 ~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~-~ 173 (602)
..++.. .|-..|+...... ...+...++||||||-++... .+..++... +
T Consensus 409 ~tGi~a------------------------~TI~sll~~~~~~-~~~l~~~~vlIVDEASMv~~~----~m~~LL~~a~~ 459 (988)
T PRK13889 409 GSGIAS------------------------RTIASLEHGWGQG-RDLLTSRDVLVIDEAGMVGTR----QLERVLSHAAD 459 (988)
T ss_pred ccCcch------------------------hhHHHHHhhhccc-ccccccCcEEEEECcccCCHH----HHHHHHHhhhh
Confidence 112211 1212221111111 123556679999999976543 344455433 4
Q ss_pred CCcceeeeec
Q 007481 174 KRRQTMLFSA 183 (602)
Q Consensus 174 ~~~q~il~SA 183 (602)
...++|++.=
T Consensus 460 ~garvVLVGD 469 (988)
T PRK13889 460 AGAKVVLVGD 469 (988)
T ss_pred CCCEEEEECC
Confidence 4566666543
No 200
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.23 E-value=0.0023 Score=58.11 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=38.6
Q ss_pred ccCCCCHHHHHHHHHHHhcCC-ceEEEEcCccccccCcCC--ccEEEEcCCCC
Q 007481 273 LHGNLTQAQRLEALELFRKQH-VDFLIATDVAARGLDIIG--VQTVINYACPR 322 (602)
Q Consensus 273 lhg~~~~~eR~~il~~F~~g~-~~iLVaT~~~~~GlDip~--v~~VI~~d~p~ 322 (602)
+.-+.+..+...+++.|+... ..||++|..+++|+|+|+ +++||...+|.
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 334455556788999998754 379999988999999987 67888877774
No 201
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.18 E-value=0.0007 Score=60.27 Aligned_cols=17 Identities=41% Similarity=0.372 Sum_probs=11.9
Q ss_pred CCCEEEEcCCCchHHHH
Q 007481 35 GRDICGSAITGSGKTAA 51 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a 51 (602)
++.+++.|++|+|||..
T Consensus 4 ~~~~~i~G~~G~GKT~~ 20 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTL 20 (131)
T ss_dssp ---EEEEE-TTSSHHHH
T ss_pred CcccEEEcCCCCCHHHH
Confidence 45788999999999975
No 202
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.18 E-value=0.0082 Score=63.03 Aligned_cols=134 Identities=26% Similarity=0.318 Sum_probs=81.4
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEE-EEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRV-LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 113 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~v-LiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~ 113 (602)
++-+.+.||||-|||+.. .-+..++....+ ..+| ||-+.|-=.. .+++++.|+...++.+.
T Consensus 203 ~~vi~LVGPTGVGKTTTl-AKLAar~~~~~~---~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~~------------ 264 (407)
T COG1419 203 KRVIALVGPTGVGKTTTL-AKLAARYVMLKK---KKKVAIITTDTYRIG--AVEQLKTYADIMGVPLE------------ 264 (407)
T ss_pred CcEEEEECCCCCcHHHHH-HHHHHHHHhhcc---CcceEEEEeccchhh--HHHHHHHHHHHhCCceE------------
Confidence 567779999999999763 333333331111 1123 5544443332 34567777776666554
Q ss_pred HHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccc-cCCcHHHHHHHHHhCCCCcceeeeeccCC-hhHHH
Q 007481 114 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQTMLFSATLT-EDVDE 191 (602)
Q Consensus 114 ~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~-~~gf~~~i~~i~~~~~~~~q~il~SAT~~-~~~~~ 191 (602)
++-+|.-|.+.+.. +.+.++|.||=+.+-. +.....++..++...+..--.+.+|||.. .++.+
T Consensus 265 ---------vv~~~~el~~ai~~-----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlke 330 (407)
T COG1419 265 ---------VVYSPKELAEAIEA-----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKE 330 (407)
T ss_pred ---------EecCHHHHHHHHHH-----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHH
Confidence 45566666665543 4456789999888644 32355677777777766666678888875 55666
Q ss_pred HHHHhcCCC
Q 007481 192 LIKLSLTKP 200 (602)
Q Consensus 192 l~~~~l~~p 200 (602)
+...+-.-|
T Consensus 331 i~~~f~~~~ 339 (407)
T COG1419 331 IIKQFSLFP 339 (407)
T ss_pred HHHHhccCC
Confidence 666664444
No 203
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.0066 Score=64.47 Aligned_cols=130 Identities=19% Similarity=0.200 Sum_probs=69.9
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEc-Ch-HHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHH
Q 007481 36 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT-PT-RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 113 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~-Pt-r~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~ 113 (602)
..+++.||||+|||++.. -+...+..... ..+.+|.+++ .+ |.-+. .++..|+...++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~a-KLA~~~~~~~~-~~g~~V~lit~Dt~R~aa~---eQL~~~a~~lgvpv~~----------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIA-KLAAIYGINSD-DKSLNIKIITIDNYRIGAK---KQIQTYGDIMGIPVKA----------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHH-HHHHHHHhhhc-cCCCeEEEEeccCccHHHH---HHHHHHhhcCCcceEe-----------
Confidence 457799999999997643 23233322110 0122344333 33 23332 2366666655654422
Q ss_pred HHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC-cHHHHHHHHHhCCCC-cceeeeeccCCh-hHH
Q 007481 114 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-FSAEIHELVRLCPKR-RQTMLFSATLTE-DVD 190 (602)
Q Consensus 114 ~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g-f~~~i~~i~~~~~~~-~q~il~SAT~~~-~~~ 190 (602)
+.++..+...+.. +.+.++||||++.++.... ....+..++..+... .-++.+|||... ++.
T Consensus 239 ----------~~~~~~l~~~L~~-----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~ 303 (388)
T PRK12723 239 ----------IESFKDLKEEITQ-----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK 303 (388)
T ss_pred ----------eCcHHHHHHHHHH-----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH
Confidence 2234445444443 2457899999999876432 234555566555433 356788998864 344
Q ss_pred HHHHHh
Q 007481 191 ELIKLS 196 (602)
Q Consensus 191 ~l~~~~ 196 (602)
+....+
T Consensus 304 ~~~~~~ 309 (388)
T PRK12723 304 EIFHQF 309 (388)
T ss_pred HHHHHh
Confidence 444444
No 204
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.12 E-value=0.0013 Score=76.47 Aligned_cols=154 Identities=21% Similarity=0.149 Sum_probs=94.4
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHc-----------CCC-CCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEE
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLY-----------RPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCL 102 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~-----------~~~-~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~ 102 (602)
|+++++....|+|||..-+...+..+-. ... ......+|||||.. +..||++++...+... +.+..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~a-Il~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNA-ILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHH-HHHHHHHHHHHhcccc-ceEEE
Confidence 5788999999999998755444332111 111 12223489999985 5589999999876543 56665
Q ss_pred EECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCC-------------CC----CCC--cceEEEeCccccccCCcHH
Q 007481 103 VVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS-------------VD----LDD--LAVLILDEADRLLELGFSA 163 (602)
Q Consensus 103 ~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~-------------~~----l~~--l~llVlDEah~l~~~gf~~ 163 (602)
..|=.........-.-.+|||+||+..|..-+..... .. |-. |=-|+||||+++.. ...
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHH
Confidence 5553221111112234579999999999766543211 11 111 12479999998766 345
Q ss_pred HHHHHHHhCCCCcceeeeeccCChhHHHHH
Q 007481 164 EIHELVRLCPKRRQTMLFSATLTEDVDELI 193 (602)
Q Consensus 164 ~i~~i~~~~~~~~q~il~SAT~~~~~~~l~ 193 (602)
...+++..++. ...-.+|+||-..++++.
T Consensus 530 ~~a~M~~rL~~-in~W~VTGTPiq~Iddl~ 558 (1394)
T KOG0298|consen 530 AAAEMVRRLHA-INRWCVTGTPIQKIDDLF 558 (1394)
T ss_pred HHHHHHHHhhh-hceeeecCCchhhhhhhH
Confidence 55566555553 346899999877666653
No 205
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.11 E-value=0.0075 Score=71.53 Aligned_cols=138 Identities=18% Similarity=0.111 Sum_probs=82.8
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhc-CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHH
Q 007481 4 NLSRPLLRACEALGYSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 82 (602)
Q Consensus 4 ~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~-g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La 82 (602)
++++..+.+....+ ..+++-|.+++..+.. ++-+++.|+.|+|||.+ +-++.+.+.. .+.+|+.++||.--+
T Consensus 366 ~v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~-----~G~~V~g~ApTgkAA 438 (1102)
T PRK13826 366 GVREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEA-----AGYRVVGGALAGKAA 438 (1102)
T ss_pred CCCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHH-----cCCeEEEEcCcHHHH
Confidence 45566666655544 4599999999998865 45577999999999975 3444443322 345799999998776
Q ss_pred HHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcH
Q 007481 83 VQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS 162 (602)
Q Consensus 83 ~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~ 162 (602)
..+.+ ..++... |-..|+-.... ....+..-++||||||.++..
T Consensus 439 ~~L~e-------~~Gi~a~------------------------TIas~ll~~~~-~~~~l~~~~vlVIDEAsMv~~---- 482 (1102)
T PRK13826 439 EGLEK-------EAGIQSR------------------------TLSSWELRWNQ-GRDQLDNKTVFVLDEAGMVAS---- 482 (1102)
T ss_pred HHHHH-------hhCCCee------------------------eHHHHHhhhcc-CccCCCCCcEEEEECcccCCH----
Confidence 55432 1233222 11111100101 112355567999999997643
Q ss_pred HHHHHHHHhCC-CCcceeeeecc
Q 007481 163 AEIHELVRLCP-KRRQTMLFSAT 184 (602)
Q Consensus 163 ~~i~~i~~~~~-~~~q~il~SAT 184 (602)
..+..++..++ ...++|++.=+
T Consensus 483 ~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 483 RQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHHHhcCCEEEEECCH
Confidence 34445565554 45666666543
No 206
>PRK04296 thymidine kinase; Provisional
Probab=97.10 E-value=0.0013 Score=63.15 Aligned_cols=108 Identities=16% Similarity=0.190 Sum_probs=57.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcCh---HHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHH
Q 007481 37 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT---RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 113 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Pt---r~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~ 113 (602)
=.++.+|+|+|||..+ +-++.++... +.+++|+-|. +.... .+....++.+.
T Consensus 4 i~litG~~GsGKTT~~-l~~~~~~~~~-----g~~v~i~k~~~d~~~~~~-------~i~~~lg~~~~------------ 58 (190)
T PRK04296 4 LEFIYGAMNSGKSTEL-LQRAYNYEER-----GMKVLVFKPAIDDRYGEG-------KVVSRIGLSRE------------ 58 (190)
T ss_pred EEEEECCCCCHHHHHH-HHHHHHHHHc-----CCeEEEEeccccccccCC-------cEecCCCCccc------------
Confidence 4678999999999764 5555555433 3357888663 22111 11111121110
Q ss_pred HHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeecc
Q 007481 114 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 184 (602)
Q Consensus 114 ~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SAT 184 (602)
.+.+..+..+++.+.. .-..+++|||||+|.+. .+.+.+++..+......+.+++-
T Consensus 59 -------~~~~~~~~~~~~~~~~----~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 59 -------AIPVSSDTDIFELIEE----EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred -------ceEeCChHHHHHHHHh----hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEec
Confidence 1223455556665544 23457899999998642 23355565554333344555553
No 207
>PRK14974 cell division protein FtsY; Provisional
Probab=97.09 E-value=0.0073 Score=62.92 Aligned_cols=130 Identities=17% Similarity=0.164 Sum_probs=72.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcCh---HHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHH
Q 007481 37 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT---RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 113 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Pt---r~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~ 113 (602)
-+++.|++|+|||.+. .-+...+... +.+++++... .....|+.. ++...++.+.....+....
T Consensus 142 vi~~~G~~GvGKTTti-akLA~~l~~~-----g~~V~li~~Dt~R~~a~eqL~~----~a~~lgv~v~~~~~g~dp~--- 208 (336)
T PRK14974 142 VIVFVGVNGTGKTTTI-AKLAYYLKKN-----GFSVVIAAGDTFRAGAIEQLEE----HAERLGVKVIKHKYGADPA--- 208 (336)
T ss_pred EEEEEcCCCCCHHHHH-HHHHHHHHHc-----CCeEEEecCCcCcHHHHHHHHH----HHHHcCCceecccCCCCHH---
Confidence 3558999999999753 2222333222 2356666543 334455433 4444455443222111110
Q ss_pred HHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccccc-CCcHHHHHHHHHhCCCCcceeeeeccCChhHHHH
Q 007481 114 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDEL 192 (602)
Q Consensus 114 ~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~-~gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l 192 (602)
..+.+.+... .....++|+||.++++.. ..+...+..+.+...+..-++.++||..++..+.
T Consensus 209 --------------~v~~~ai~~~---~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~ 271 (336)
T PRK14974 209 --------------AVAYDAIEHA---KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQ 271 (336)
T ss_pred --------------HHHHHHHHHH---HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHH
Confidence 0112222211 112356999999999863 3456777777777777777888899887766665
Q ss_pred HHHh
Q 007481 193 IKLS 196 (602)
Q Consensus 193 ~~~~ 196 (602)
+..+
T Consensus 272 a~~f 275 (336)
T PRK14974 272 AREF 275 (336)
T ss_pred HHHH
Confidence 5544
No 208
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.03 E-value=0.0032 Score=57.25 Aligned_cols=43 Identities=23% Similarity=0.289 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCCc---eEEEEcCc--cccccCcCC--ccEEEEcCCCC
Q 007481 280 AQRLEALELFRKQHV---DFLIATDV--AARGLDIIG--VQTVINYACPR 322 (602)
Q Consensus 280 ~eR~~il~~F~~g~~---~iLVaT~~--~~~GlDip~--v~~VI~~d~p~ 322 (602)
.+...+++.|+...- .||+++.- +++|||+|+ +++||...+|.
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 345788889987543 68888876 899999987 67899888774
No 209
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.98 E-value=0.0064 Score=65.75 Aligned_cols=141 Identities=17% Similarity=0.182 Sum_probs=70.5
Q ss_pred EEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHH-Hh-hcCCceEEEEECCCCHH----HHH
Q 007481 40 GSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK-IA-QFTDIRCCLVVGGLSTK----MQE 113 (602)
Q Consensus 40 i~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~-l~-~~~~i~v~~~~g~~~~~----~~~ 113 (602)
..+.||||||++..-.||+.....-. ..|+.|......+.....+.. +. ++. ++-.+.+++.... ...
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr-----~flffvnq~nilekt~~nftd~~s~kyl-f~e~i~~~d~~i~ikkvn~f 75 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYR-----NFLFFVNQANILEKTKLNFTDSVSSKYL-FSENININDENIEIKKVNNF 75 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchh-----hEEEEecchhHHHHHHhhcccchhhhHh-hhhhhhcCCceeeeeeeccc
Confidence 46789999998865555554433222 367777776665544332211 00 000 0000111111100 001
Q ss_pred HHHcCCCcEEEECcHHHHHHHHccC--CCC---CCCcc-eEEEeCccccccCC-------------cHHHHHHHHHhCCC
Q 007481 114 TALRSMPDIVVATPGRMIDHLRNSM--SVD---LDDLA-VLILDEADRLLELG-------------FSAEIHELVRLCPK 174 (602)
Q Consensus 114 ~~l~~~~~IvI~Tp~~L~~~l~~~~--~~~---l~~l~-llVlDEah~l~~~g-------------f~~~i~~i~~~~~~ 174 (602)
........|+++|.+.|...+.+.. .+. +.+.. +++-||||++.... |...+..-++ -.+
T Consensus 76 sehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~-~nk 154 (812)
T COG3421 76 SEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALE-QNK 154 (812)
T ss_pred CccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHh-cCC
Confidence 1123445799999999877665432 222 33334 45779999976422 1121111111 123
Q ss_pred CcceeeeeccCCh
Q 007481 175 RRQTMLFSATLTE 187 (602)
Q Consensus 175 ~~q~il~SAT~~~ 187 (602)
..-++.+|||.+.
T Consensus 155 d~~~lef~at~~k 167 (812)
T COG3421 155 DNLLLEFSATIPK 167 (812)
T ss_pred CceeehhhhcCCc
Confidence 4456788999983
No 210
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.96 E-value=0.012 Score=63.48 Aligned_cols=128 Identities=25% Similarity=0.276 Sum_probs=67.5
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHH-cCCCCCCCcEEEEEcC-h-HHHHHHHHHHHHHHhhcCCceEEEEECCCCHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLL-YRPKRIPAIRVLILTP-T-RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM 111 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~-~~~~~~~~~~vLiL~P-t-r~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~ 111 (602)
++.+++.+|||+|||.... -+...+. .. .+.+|.+|.- + +.-+ .+.+..|+...++.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~-kLA~~~~~~~----~g~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~~---------- 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLA-KLAARYALLY----GKKKVALITLDTYRIGA---VEQLKTYAKIMGIPVE---------- 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHHHHHhc----CCCeEEEEECCccHHHH---HHHHHHHHHHhCCceE----------
Confidence 4567899999999997643 2222222 11 1224544432 2 2211 2345555444444322
Q ss_pred HHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccC-CcHHHHHHHHHh-CCCCcceeeeeccCCh-h
Q 007481 112 QETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAEIHELVRL-CPKRRQTMLFSATLTE-D 188 (602)
Q Consensus 112 ~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~-gf~~~i~~i~~~-~~~~~q~il~SAT~~~-~ 188 (602)
++.++..+...+.. +..+++||||.+.+.... .....+..++.. ..+....+.+|||... +
T Consensus 283 -----------~~~~~~~l~~~l~~-----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~ 346 (424)
T PRK05703 283 -----------VVYDPKELAKALEQ-----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYED 346 (424)
T ss_pred -----------ccCCHHhHHHHHHH-----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHH
Confidence 23345555555543 234789999999875432 123455555552 2233457788998764 4
Q ss_pred HHHHHHHh
Q 007481 189 VDELIKLS 196 (602)
Q Consensus 189 ~~~l~~~~ 196 (602)
+.+....+
T Consensus 347 l~~~~~~f 354 (424)
T PRK05703 347 LKDIYKHF 354 (424)
T ss_pred HHHHHHHh
Confidence 44444444
No 211
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.92 E-value=0.0038 Score=62.72 Aligned_cols=79 Identities=19% Similarity=0.379 Sum_probs=60.4
Q ss_pred HHHHHHHhcCCceEEEEcCccccccCcCC--------ccEEEEcCCCCChhhHHHHhhhcccCCC-cceEEEEEecC---
Q 007481 283 LEALELFRKQHVDFLIATDVAARGLDIIG--------VQTVINYACPRDLTSYVHRVGRTARAGR-EGYAVTFVTDN--- 350 (602)
Q Consensus 283 ~~il~~F~~g~~~iLVaT~~~~~GlDip~--------v~~VI~~d~p~s~~~yiQriGRa~R~g~-~g~~i~l~~~~--- 350 (602)
....+.|.+|+.+|+|.+++++.||.+.. -.+-|.+.+|||....+|..||++|.|+ ..-.|.++..+
T Consensus 51 ~~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~g 130 (278)
T PF13871_consen 51 IAEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPG 130 (278)
T ss_pred HHHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHH
Confidence 35678999999999999999999999863 2456778999999999999999999886 34444444433
Q ss_pred cHHHHHHHHHH
Q 007481 351 DRSLLKAIAKR 361 (602)
Q Consensus 351 d~~~l~~i~~~ 361 (602)
|..+...+.+.
T Consensus 131 E~Rfas~va~r 141 (278)
T PF13871_consen 131 ERRFASTVARR 141 (278)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 212
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.88 E-value=0.0079 Score=57.93 Aligned_cols=127 Identities=17% Similarity=0.178 Sum_probs=70.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEc-C-hHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHH
Q 007481 38 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT-P-TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115 (602)
Q Consensus 38 vii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~-P-tr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~ 115 (602)
+++.||||+|||.+. .-+..++..... ++.+++ - .|.= ..++++.|+...++.+.......+...
T Consensus 4 i~lvGptGvGKTTt~-aKLAa~~~~~~~-----~v~lis~D~~R~g---a~eQL~~~a~~l~vp~~~~~~~~~~~~---- 70 (196)
T PF00448_consen 4 IALVGPTGVGKTTTI-AKLAARLKLKGK-----KVALISADTYRIG---AVEQLKTYAEILGVPFYVARTESDPAE---- 70 (196)
T ss_dssp EEEEESTTSSHHHHH-HHHHHHHHHTT-------EEEEEESTSSTH---HHHHHHHHHHHHTEEEEESSTTSCHHH----
T ss_pred EEEECCCCCchHhHH-HHHHHHHhhccc-----cceeecCCCCCcc---HHHHHHHHHHHhccccchhhcchhhHH----
Confidence 568999999999863 444444444321 344443 2 2322 245566676666776554332221111
Q ss_pred HcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccC-CcHHHHHHHHHhCCCCcceeeeeccCChhHHHHH
Q 007481 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELI 193 (602)
Q Consensus 116 l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~-gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~ 193 (602)
.+.+.+.. ...+++++|+||-+.+.... ....++..++....+..-.+.+|||...+....+
T Consensus 71 -------------~~~~~l~~---~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~ 133 (196)
T PF00448_consen 71 -------------IAREALEK---FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQA 133 (196)
T ss_dssp -------------HHHHHHHH---HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHH
T ss_pred -------------HHHHHHHH---HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHH
Confidence 11122221 11123678999999876532 2456677777777666677888999876654433
No 213
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.88 E-value=0.0031 Score=63.21 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=34.3
Q ss_pred CCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeeccCC
Q 007481 139 SVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 186 (602)
Q Consensus 139 ~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SAT~~ 186 (602)
......+.++|+||||.|.... ...+...++..+....+++++.-+.
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCChh
Confidence 3456667899999999987653 3455666666777778888877664
No 214
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.87 E-value=0.003 Score=55.91 Aligned_cols=42 Identities=26% Similarity=0.169 Sum_probs=26.1
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 82 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La 82 (602)
+..+++.||+|+|||... ..++..+. ... ..++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~-~~l~~~~~-~~~----~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA-RALARELG-PPG----GGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHH-HHHHhccC-CCC----CCEEEECCEEccc
Confidence 467889999999999753 33333322 111 2377777776543
No 215
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.86 E-value=0.013 Score=52.27 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCchHHHH
Q 007481 35 GRDICGSAITGSGKTAA 51 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a 51 (602)
++.+++.||+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999964
No 216
>PRK08116 hypothetical protein; Validated
Probab=96.76 E-value=0.031 Score=56.65 Aligned_cols=124 Identities=16% Similarity=0.149 Sum_probs=64.8
Q ss_pred CcHHHHHHHHHHh-----------cCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHH
Q 007481 21 PTPIQAACIPLAL-----------TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 89 (602)
Q Consensus 21 pt~~Q~~~i~~~l-----------~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~ 89 (602)
.++-|..++..+. .+..+++.|++|+|||..+ ..+...+.... ..++ ..+..+|...+...+
T Consensus 89 ~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa-~aia~~l~~~~-----~~v~-~~~~~~ll~~i~~~~ 161 (268)
T PRK08116 89 FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLA-ACIANELIEKG-----VPVI-FVNFPQLLNRIKSTY 161 (268)
T ss_pred CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHH-HHHHHHHHHcC-----CeEE-EEEHHHHHHHHHHHH
Confidence 4566666554433 1234889999999999754 45666655431 2344 445555654443322
Q ss_pred HHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccc--ccCCcHHHHHH
Q 007481 90 EKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL--LELGFSAEIHE 167 (602)
Q Consensus 90 ~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l--~~~gf~~~i~~ 167 (602)
.. . +. .+...+++.+ .+.++|||||.+.. .++ ....+..
T Consensus 162 ~~---~---------~~------------------~~~~~~~~~l--------~~~dlLviDDlg~e~~t~~-~~~~l~~ 202 (268)
T PRK08116 162 KS---S---------GK------------------EDENEIIRSL--------VNADLLILDDLGAERDTEW-AREKVYN 202 (268)
T ss_pred hc---c---------cc------------------ccHHHHHHHh--------cCCCEEEEecccCCCCCHH-HHHHHHH
Confidence 11 0 00 0122233333 23568999999643 233 2344555
Q ss_pred HHHhC-CCCcceeeeeccCChhHH
Q 007481 168 LVRLC-PKRRQTMLFSATLTEDVD 190 (602)
Q Consensus 168 i~~~~-~~~~q~il~SAT~~~~~~ 190 (602)
|+... .....+|+.|...+.++.
T Consensus 203 iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 203 IIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred HHHHHHHCCCCEEEECCCCHHHHH
Confidence 55543 233456666666555544
No 217
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.75 E-value=0.0049 Score=61.19 Aligned_cols=87 Identities=21% Similarity=0.267 Sum_probs=65.4
Q ss_pred CCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCC-CHHHHHHHHc-CCCcEEEECcHHHHHHHHccCCCCCCC
Q 007481 67 IPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGL-STKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDD 144 (602)
Q Consensus 67 ~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~-~~~~~~~~l~-~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 144 (602)
...|.+||||.+-.-|..+.+.++.|.. .+..|+-++.-. ...++...+. ...+|.|+||+||..++.+ ..+.++.
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~-~~L~l~~ 201 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLEN-GALSLSN 201 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHc-CCCCccc
Confidence 4467899999988888878777776631 134445555543 5566666676 4689999999999999977 4788999
Q ss_pred cceEEEeCccc
Q 007481 145 LAVLILDEADR 155 (602)
Q Consensus 145 l~llVlDEah~ 155 (602)
+.+||||--|.
T Consensus 202 l~~ivlD~s~~ 212 (252)
T PF14617_consen 202 LKRIVLDWSYL 212 (252)
T ss_pred CeEEEEcCCcc
Confidence 99999998774
No 218
>PRK06921 hypothetical protein; Provisional
Probab=96.72 E-value=0.023 Score=57.48 Aligned_cols=44 Identities=23% Similarity=0.200 Sum_probs=27.1
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 84 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q 84 (602)
+.++++.|++|+|||..+ ..+...+.... +..|+++. ..++..+
T Consensus 117 ~~~l~l~G~~G~GKThLa-~aia~~l~~~~----g~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLL-TAAANELMRKK----GVPVLYFP-FVEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHHhhhc----CceEEEEE-HHHHHHH
Confidence 578999999999999753 44555554321 23455554 4455443
No 219
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.65 E-value=0.016 Score=59.59 Aligned_cols=64 Identities=22% Similarity=0.282 Sum_probs=45.0
Q ss_pred HCCCCCCcHHHHHHHHHHhcC--CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 15 ALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 15 ~~g~~~pt~~Q~~~i~~~l~g--~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
..|..-....|.-|+..++.. .=|.+.++-|||||+.++.+.++..+.+.. .-+++|-=|+..+
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~---y~KiiVtRp~vpv 288 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR---YRKIIVTRPTVPV 288 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh---hceEEEecCCcCc
Confidence 457776667777778888875 345589999999998888887777665432 2256776676554
No 220
>PRK12377 putative replication protein; Provisional
Probab=96.62 E-value=0.068 Score=53.38 Aligned_cols=59 Identities=22% Similarity=0.214 Sum_probs=34.9
Q ss_pred cHHHHHHHHHHh-------c-CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHH
Q 007481 22 TPIQAACIPLAL-------T-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHS 87 (602)
Q Consensus 22 t~~Q~~~i~~~l-------~-g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~ 87 (602)
.+-|..++..+. . ..++++.||+|+|||..+ ..+...+... +..| +.++..+|..++..
T Consensus 80 ~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa-~AIa~~l~~~-----g~~v-~~i~~~~l~~~l~~ 146 (248)
T PRK12377 80 NDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLA-AAIGNRLLAK-----GRSV-IVVTVPDVMSRLHE 146 (248)
T ss_pred ChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHHHHHc-----CCCe-EEEEHHHHHHHHHH
Confidence 456666654332 1 257899999999999753 4455555432 2224 44455667665533
No 221
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.61 E-value=0.037 Score=55.12 Aligned_cols=122 Identities=19% Similarity=0.303 Sum_probs=64.9
Q ss_pred cHHHHHHHHHHhc------C--CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHh
Q 007481 22 TPIQAACIPLALT------G--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 93 (602)
Q Consensus 22 t~~Q~~~i~~~l~------g--~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~ 93 (602)
++.|..++..+.. + ..+++.+++|+|||..+ ..+...+... +..|+++ +..+|...+...+..
T Consensus 78 ~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa-~aia~~l~~~-----g~~v~~i-t~~~l~~~l~~~~~~-- 148 (244)
T PRK07952 78 CEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLA-AAICNELLLR-----GKSVLII-TVADIMSAMKDTFSN-- 148 (244)
T ss_pred CchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHH-HHHHHHHHhc-----CCeEEEE-EHHHHHHHHHHHHhh--
Confidence 4567666655442 1 47889999999999753 4455555443 2245555 444444333222110
Q ss_pred hcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHH-HHHHHHHhC
Q 007481 94 QFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA-EIHELVRLC 172 (602)
Q Consensus 94 ~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~-~i~~i~~~~ 172 (602)
. + .+...+++.+ ..+++|||||++......|.. .+..|+...
T Consensus 149 -----------~---------------~---~~~~~~l~~l--------~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~R 191 (244)
T PRK07952 149 -----------S---------------E---TSEEQLLNDL--------SNVDLLVIDEIGVQTESRYEKVIINQIVDRR 191 (244)
T ss_pred -----------c---------------c---ccHHHHHHHh--------ccCCEEEEeCCCCCCCCHHHHHHHHHHHHHH
Confidence 0 0 1223334332 346799999999876544443 445555543
Q ss_pred C-CCcceeeeeccCChhH
Q 007481 173 P-KRRQTMLFSATLTEDV 189 (602)
Q Consensus 173 ~-~~~q~il~SAT~~~~~ 189 (602)
. ....+++.|--.+.++
T Consensus 192 y~~~~~tiitSNl~~~~l 209 (244)
T PRK07952 192 SSSKRPTGMLTNSNMEEM 209 (244)
T ss_pred HhCCCCEEEeCCCCHHHH
Confidence 2 2344555555444443
No 222
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.59 E-value=0.017 Score=57.93 Aligned_cols=73 Identities=14% Similarity=0.212 Sum_probs=50.0
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHh-------cCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHH
Q 007481 11 RACEALGYSKPTPIQAACIPLAL-------TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 83 (602)
Q Consensus 11 ~~l~~~g~~~pt~~Q~~~i~~~l-------~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~ 83 (602)
+.+..+.|......+..++..+. .+.++++.||+|+|||..+ .++...+... + .-++++++.+|+.
T Consensus 74 k~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa-~Ai~~~l~~~-----g-~sv~f~~~~el~~ 146 (254)
T COG1484 74 KTFEEFDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLA-IAIGNELLKA-----G-ISVLFITAPDLLS 146 (254)
T ss_pred CCcccccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHH-HHHHHHHHHc-----C-CeEEEEEHHHHHH
Confidence 44556677778888888776554 3679999999999999764 4455555422 1 2466667778877
Q ss_pred HHHHHHH
Q 007481 84 QVHSMIE 90 (602)
Q Consensus 84 Q~~~~~~ 90 (602)
++...+.
T Consensus 147 ~Lk~~~~ 153 (254)
T COG1484 147 KLKAAFD 153 (254)
T ss_pred HHHHHHh
Confidence 7655544
No 223
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.59 E-value=0.019 Score=61.15 Aligned_cols=75 Identities=15% Similarity=0.133 Sum_probs=43.5
Q ss_pred CCCCCCcHHHHHHHHH---Hhc-CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHH
Q 007481 16 LGYSKPTPIQAACIPL---ALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 91 (602)
Q Consensus 16 ~g~~~pt~~Q~~~i~~---~l~-g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~ 91 (602)
+.|+..+|-|-.-.-. .|. +.+.++.+|+|+|||.+.+-.++.--+..+. ...+.++-.-|..=.+.+..+++.
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~--~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD--EHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc--ccceEEEecCcchHHHHHHHHHHH
Confidence 5677788888765433 333 5789999999999998754444433333332 122455555444433434444443
Q ss_pred H
Q 007481 92 I 92 (602)
Q Consensus 92 l 92 (602)
+
T Consensus 90 l 90 (755)
T KOG1131|consen 90 L 90 (755)
T ss_pred H
Confidence 3
No 224
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.58 E-value=0.0057 Score=69.55 Aligned_cols=127 Identities=17% Similarity=0.100 Sum_probs=77.6
Q ss_pred CCCCCcHHHHHHHHHHhcCCC-EEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhc
Q 007481 17 GYSKPTPIQAACIPLALTGRD-ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 95 (602)
Q Consensus 17 g~~~pt~~Q~~~i~~~l~g~d-vii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~ 95 (602)
-+..++.-|++|+-.++..+| .+|.|-+|+|||.. +..++..|... +.+||+.+-|...+..+ +.++..
T Consensus 666 ~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTt-I~~LIkiL~~~-----gkkVLLtsyThsAVDNI---LiKL~~- 735 (1100)
T KOG1805|consen 666 ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTT-ISLLIKILVAL-----GKKVLLTSYTHSAVDNI---LIKLKG- 735 (1100)
T ss_pred HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhh-HHHHHHHHHHc-----CCeEEEEehhhHHHHHH---HHHHhc-
Confidence 355788999999999998766 55899999999975 33344444433 33689999998776655 444432
Q ss_pred CCceEEEEECCCC--HHH---------------HHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccccc
Q 007481 96 TDIRCCLVVGGLS--TKM---------------QETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 158 (602)
Q Consensus 96 ~~i~v~~~~g~~~--~~~---------------~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~ 158 (602)
.++.+.-+-.+.. ... ....+...+.||.+|---+.+ .-|....++++|||||-.++.
T Consensus 736 ~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~-----plf~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 736 FGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINH-----PLFVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred cCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCc-----hhhhccccCEEEEcccccccc
Confidence 2333221111111 111 111234567888888433322 223445688999999997653
No 225
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.53 E-value=0.04 Score=58.12 Aligned_cols=128 Identities=19% Similarity=0.170 Sum_probs=68.0
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcC-h-H-HHHHHHHHHHHHHhhcCCceEEEEECCCCHHHH
Q 007481 36 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP-T-R-ELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 112 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~P-t-r-~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~ 112 (602)
+.+++.||||+|||..... +...+... +.++.++.. + | ..+.|+ ..++...++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaK-LA~~L~~~-----GkkVglI~aDt~RiaAvEQL----k~yae~lgipv------------ 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAK-MAWQFHGK-----KKTVGFITTDHSRIGTVQQL----QDYVKTIGFEV------------ 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHH-HHHHHHHc-----CCcEEEEecCCcchHHHHHH----HHHhhhcCCcE------------
Confidence 4567999999999976432 22333322 224544433 2 2 233343 33433333322
Q ss_pred HHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC-cHHHHHHHHHhCCCCcceeeeeccCC-hhHH
Q 007481 113 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-FSAEIHELVRLCPKRRQTMLFSATLT-EDVD 190 (602)
Q Consensus 113 ~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g-f~~~i~~i~~~~~~~~q~il~SAT~~-~~~~ 190 (602)
+++.+|..+.+.+.... ...++++|+||-+-+..... ....+..++....+..-++.+|||.. .++.
T Consensus 300 ---------~v~~d~~~L~~aL~~lk--~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~ 368 (436)
T PRK11889 300 ---------IAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMI 368 (436)
T ss_pred ---------EecCCHHHHHHHHHHHH--hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHH
Confidence 22346677766664321 01246799999998866432 23444455544434434556888765 4556
Q ss_pred HHHHHh
Q 007481 191 ELIKLS 196 (602)
Q Consensus 191 ~l~~~~ 196 (602)
+.+..+
T Consensus 369 ~i~~~F 374 (436)
T PRK11889 369 EIITNF 374 (436)
T ss_pred HHHHHh
Confidence 666555
No 226
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.53 E-value=0.11 Score=54.23 Aligned_cols=44 Identities=25% Similarity=0.182 Sum_probs=28.2
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 85 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~ 85 (602)
+.++++.||||+|||..+ ..+...+... +..|++ ++..+|..++
T Consensus 183 ~~~Lll~G~~GtGKThLa-~aIa~~l~~~-----g~~V~y-~t~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLS-NCIAKELLDR-----GKSVIY-RTADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHHH-HHHHHHHHHC-----CCeEEE-EEHHHHHHHH
Confidence 578999999999999753 4455555433 223544 4555665544
No 227
>PHA02533 17 large terminase protein; Provisional
Probab=96.49 E-value=0.024 Score=62.92 Aligned_cols=148 Identities=15% Similarity=0.106 Sum_probs=85.2
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCc-
Q 007481 20 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI- 98 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i- 98 (602)
.|.|+|...+..+..++-.++..+=..|||.+....++...+.. ++..+++++|+..-|..+++.++.+....+.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~----~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l 134 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN----KDKNVGILAHKASMAAEVLDRTKQAIELLPDF 134 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC----CCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHH
Confidence 48999999998887677778899999999987654455444433 2347999999999998888877765443211
Q ss_pred -eEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCC--C
Q 007481 99 -RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK--R 175 (602)
Q Consensus 99 -~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~--~ 175 (602)
........ .....+.++..|.+.|... + ...=.++.++|+||+|.+.+ +.+.+..+...+.. .
T Consensus 135 ~~~~i~~~~----~~~I~l~NGS~I~~lss~~--~------t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~~ 200 (534)
T PHA02533 135 LQPGIVEWN----KGSIELENGSKIGAYASSP--D------AVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGRS 200 (534)
T ss_pred hhcceeecC----ccEEEeCCCCEEEEEeCCC--C------ccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCCC
Confidence 11110000 0111124455554444210 1 11112356899999998765 22333333332222 2
Q ss_pred cceeeeeccC
Q 007481 176 RQTMLFSATL 185 (602)
Q Consensus 176 ~q~il~SAT~ 185 (602)
.+++.+|++.
T Consensus 201 ~r~iiiSTp~ 210 (534)
T PHA02533 201 SKIIITSTPN 210 (534)
T ss_pred ceEEEEECCC
Confidence 3455555553
No 228
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.45 E-value=0.004 Score=58.98 Aligned_cols=67 Identities=19% Similarity=0.262 Sum_probs=30.1
Q ss_pred HHHHCCCCCCcHHHHHHHHHHh------cCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHH
Q 007481 12 ACEALGYSKPTPIQAACIPLAL------TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 85 (602)
Q Consensus 12 ~l~~~g~~~pt~~Q~~~i~~~l------~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~ 85 (602)
.++.+.|.....++...+..+. .+.++++.||+|+|||..+ ..+...+... +..|++ ++..+|...+
T Consensus 18 ~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~l~l~G~~G~GKThLa-~ai~~~~~~~-----g~~v~f-~~~~~L~~~l 90 (178)
T PF01695_consen 18 TLENFDFSNERGIDKAQIAQLAALEFIENGENLILYGPPGTGKTHLA-VAIANEAIRK-----GYSVLF-ITASDLLDEL 90 (178)
T ss_dssp ----------------HHHHHHHH-S-SC--EEEEEESTTSSHHHHH-HHHHHHHHHT-----T--EEE-EEHHHHHHHH
T ss_pred ccccccccchhhHHHHHHHHHhcCCCcccCeEEEEEhhHhHHHHHHH-HHHHHHhccC-----CcceeE-eecCceeccc
Confidence 3455666666666666665443 3688999999999999765 4444445442 223555 4566665543
No 229
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.43 E-value=0.0089 Score=68.60 Aligned_cols=70 Identities=19% Similarity=0.125 Sum_probs=52.6
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHh
Q 007481 20 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 93 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~ 93 (602)
.++|-|.+++.. ....++|.|..|||||.+...-+.. ++... +.++.++|+|+.|+..|..+.+.+..+.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~-Li~~~-~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAH-LIRGC-GYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHH-HHHhc-CCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 478999999875 3568889999999999875444444 44321 2345679999999999999988887653
No 230
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.42 E-value=0.014 Score=61.84 Aligned_cols=60 Identities=20% Similarity=0.232 Sum_probs=45.0
Q ss_pred CCcHHHHHHHHHH------hcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHH
Q 007481 20 KPTPIQAACIPLA------LTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 85 (602)
Q Consensus 20 ~pt~~Q~~~i~~~------l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~ 85 (602)
++++-|++++..+ ..+.++.+.|+-|+|||.. +-.+...+.. .+..+++++||..-|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~~----~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLRS----RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhcc----ccceEEEecchHHHHHhc
Confidence 3678899998888 5678899999999999974 5555444443 234699999998777654
No 231
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.25 E-value=0.059 Score=49.26 Aligned_cols=38 Identities=26% Similarity=0.195 Sum_probs=23.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 38 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 38 vii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+++.|++|+|||... ..++..+.. .+..++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~-~~i~~~~~~-----~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLA-LQLALNIAT-----KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHH-HHHHHHHHh-----cCCEEEEEECCcch
Confidence 579999999999753 333333322 23357777665444
No 232
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.23 E-value=0.03 Score=68.68 Aligned_cols=63 Identities=27% Similarity=0.257 Sum_probs=45.8
Q ss_pred CCCcHHHHHHHHHHhcC--CCEEEEcCCCchHHHHH--HHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHH
Q 007481 19 SKPTPIQAACIPLALTG--RDICGSAITGSGKTAAF--ALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 85 (602)
Q Consensus 19 ~~pt~~Q~~~i~~~l~g--~dvii~a~TGSGKT~a~--~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~ 85 (602)
..+++-|.+++..++.+ +-++|.|..|+|||.+. ++.++..+... .+..++.++||.--+..+
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~----~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPES----ERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhc----cCceEEEEechHHHHHHH
Confidence 36999999999999965 66789999999999763 12223222211 345689999998887655
No 233
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.22 E-value=0.088 Score=57.68 Aligned_cols=127 Identities=20% Similarity=0.249 Sum_probs=61.2
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEc-C-hHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT-P-TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 112 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~-P-tr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~ 112 (602)
|+.+++.||||+|||..+...+ ..+.... .+.++.++. . .+..+ .+++..+....++.+..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLA-a~la~~~---~gkkVaLIdtDtyRigA---~EQLk~ya~iLgv~v~~---------- 412 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLA-QRFAAQH---APRDVALVTTDTQRVGG---REQLHSYGRQLGIAVHE---------- 412 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHH-HHHHHhc---CCCceEEEecccccccH---HHHHHHhhcccCceeEe----------
Confidence 5677799999999997642222 2222211 112344443 2 23222 12234433333332211
Q ss_pred HHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC-cHHHHHHHHHhCCCCcceeeeeccCC-hhHH
Q 007481 113 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-FSAEIHELVRLCPKRRQTMLFSATLT-EDVD 190 (602)
Q Consensus 113 ~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g-f~~~i~~i~~~~~~~~q~il~SAT~~-~~~~ 190 (602)
+.++..+...+.. +.++++||||.+-+..... ....+..+.. .....-++.++++.. .++.
T Consensus 413 -----------a~d~~~L~~aL~~-----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~a-a~~~a~lLVLpAtss~~Dl~ 475 (559)
T PRK12727 413 -----------ADSAESLLDLLER-----LRDYKLVLIDTAGMGQRDRALAAQLNWLRA-ARQVTSLLVLPANAHFSDLD 475 (559)
T ss_pred -----------cCcHHHHHHHHHH-----hccCCEEEecCCCcchhhHHHHHHHHHHHH-hhcCCcEEEEECCCChhHHH
Confidence 1234445555543 2347799999998754221 1222333322 223345677777764 3444
Q ss_pred HHHHH
Q 007481 191 ELIKL 195 (602)
Q Consensus 191 ~l~~~ 195 (602)
+.+..
T Consensus 476 eii~~ 480 (559)
T PRK12727 476 EVVRR 480 (559)
T ss_pred HHHHH
Confidence 44443
No 234
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.14 E-value=0.023 Score=65.02 Aligned_cols=78 Identities=23% Similarity=0.204 Sum_probs=55.6
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHH
Q 007481 11 RACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 90 (602)
Q Consensus 11 ~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~ 90 (602)
..+....-..+++-|++++-. ...+++|.|..|||||.+.+ .-+..++.... ..+.++|+|+.|+..|..+.+.+.
T Consensus 187 ~~f~~~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~-~r~ayLl~~~~-~~~~~IL~ltft~~AA~em~eRL~ 262 (684)
T PRK11054 187 DFFSQVESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLV-ARAGWLLARGQ-AQPEQILLLAFGRQAAEEMDERIR 262 (684)
T ss_pred HHHHhccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHH-HHHHHHHHhCC-CCHHHeEEEeccHHHHHHHHHHHH
Confidence 344455556799999999863 34578999999999998753 33333333221 245579999999999998888877
Q ss_pred HH
Q 007481 91 KI 92 (602)
Q Consensus 91 ~l 92 (602)
..
T Consensus 263 ~~ 264 (684)
T PRK11054 263 ER 264 (684)
T ss_pred Hh
Confidence 54
No 235
>PRK08727 hypothetical protein; Validated
Probab=96.09 E-value=0.039 Score=54.67 Aligned_cols=45 Identities=4% Similarity=0.087 Sum_probs=24.3
Q ss_pred cceEEEeCccccccCC-cHHHHHHHHHhCCC-CcceeeeeccCChhH
Q 007481 145 LAVLILDEADRLLELG-FSAEIHELVRLCPK-RRQTMLFSATLTEDV 189 (602)
Q Consensus 145 l~llVlDEah~l~~~g-f~~~i~~i~~~~~~-~~q~il~SAT~~~~~ 189 (602)
.++|||||+|.+.... ....+..++..+.. ..++|+.|..+|.+.
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 4589999999886432 22333344433322 334555555555443
No 236
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.09 E-value=0.049 Score=67.75 Aligned_cols=65 Identities=23% Similarity=0.180 Sum_probs=46.0
Q ss_pred CCCcHHHHHHHHHHhcC--CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHH
Q 007481 19 SKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 85 (602)
Q Consensus 19 ~~pt~~Q~~~i~~~l~g--~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~ 85 (602)
..+++.|.+++..++.+ +-++|.+..|+|||.+ +-.++..+..-.. ..+.+|+.++||.--|..+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l~~-~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTLPE-SERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHhhc-ccCceEEEECCcHHHHHHH
Confidence 36899999999999985 4577999999999975 2333333321111 1345689999998877654
No 237
>PRK05642 DNA replication initiation factor; Validated
Probab=96.06 E-value=0.038 Score=54.80 Aligned_cols=43 Identities=14% Similarity=0.267 Sum_probs=27.7
Q ss_pred cceEEEeCccccccC-CcHHHHHHHHHhCCCCcceeeeeccCCh
Q 007481 145 LAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLTE 187 (602)
Q Consensus 145 l~llVlDEah~l~~~-gf~~~i~~i~~~~~~~~q~il~SAT~~~ 187 (602)
.++||||++|.+... .+...+..++..+......+++|++.++
T Consensus 98 ~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 98 YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 468999999987543 3455666776665544445666666543
No 238
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.05 E-value=0.039 Score=54.12 Aligned_cols=18 Identities=28% Similarity=0.266 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCchHHHHH
Q 007481 35 GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~ 52 (602)
+.++++.||+|+|||..+
T Consensus 38 ~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999754
No 239
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.00 E-value=0.22 Score=55.29 Aligned_cols=112 Identities=13% Similarity=0.186 Sum_probs=75.0
Q ss_pred HHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCC-------ceeeccCCCCHHHHHHHHHHHhc----CCceEEEEc--C
Q 007481 235 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAAL-------KAAELHGNLTQAQRLEALELFRK----QHVDFLIAT--D 301 (602)
Q Consensus 235 ~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~-------~~~~lhg~~~~~eR~~il~~F~~----g~~~iLVaT--~ 301 (602)
..++... ++.+++|++|.+....+...+...|+ +.+++-..-+ -..+++.|.. |.-.+|+|. .
T Consensus 622 ~nL~~~V-PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGG 697 (821)
T KOG1133|consen 622 SNLSNAV-PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGG 697 (821)
T ss_pred HHHHhhC-CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecc
Confidence 3344433 48899999999999999999987664 2222222222 2445666653 444566554 6
Q ss_pred ccccccCcCC--ccEEEEcCCCCC--------------------------------hhhHHHHhhhcccCCCcceEEEEE
Q 007481 302 VAARGLDIIG--VQTVINYACPRD--------------------------------LTSYVHRVGRTARAGREGYAVTFV 347 (602)
Q Consensus 302 ~~~~GlDip~--v~~VI~~d~p~s--------------------------------~~~yiQriGRa~R~g~~g~~i~l~ 347 (602)
-+++|||+.+ +++||..++|.. ...--|-+|||-|.-++--+|+|+
T Consensus 698 KlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~Ll 777 (821)
T KOG1133|consen 698 KLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLL 777 (821)
T ss_pred ccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEe
Confidence 7899999976 788888888752 012248999999987777777776
Q ss_pred ecC
Q 007481 348 TDN 350 (602)
Q Consensus 348 ~~~ 350 (602)
+..
T Consensus 778 D~R 780 (821)
T KOG1133|consen 778 DKR 780 (821)
T ss_pred hhh
Confidence 643
No 240
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.96 E-value=0.065 Score=68.22 Aligned_cols=135 Identities=18% Similarity=0.209 Sum_probs=80.2
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCC
Q 007481 20 KPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 97 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~g--~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~ 97 (602)
.+++-|.+++..++.. +-.+|.++.|+|||.+ +-.++. +... .+.+|++++||..-+.++.+....
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~-~~~~----~G~~V~~lAPTgrAA~~L~e~~g~------ 496 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLH-LASE----QGYEIQIITAGSLSAQELRQKIPR------ 496 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHH-HHHh----cCCeEEEEeCCHHHHHHHHHHhcc------
Confidence 5899999999999986 4567999999999975 233333 3332 345799999999877666544221
Q ss_pred ceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhC-CCCc
Q 007481 98 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC-PKRR 176 (602)
Q Consensus 98 i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~-~~~~ 176 (602)
....+ ..+...... .....|...|+ + ....+..-++||||||.++.. ..+..++... +...
T Consensus 497 -~A~Ti-------~~~l~~l~~-~~~~~tv~~fl----~-~~~~l~~~~vlIVDEAsMl~~----~~~~~Ll~~a~~~ga 558 (1960)
T TIGR02760 497 -LASTF-------ITWVKNLFN-DDQDHTVQGLL----D-KSSPFSNKDIFVVDEANKLSN----NELLKLIDKAEQHNS 558 (1960)
T ss_pred -hhhhH-------HHHHHhhcc-cccchhHHHhh----c-ccCCCCCCCEEEEECCCCCCH----HHHHHHHHHHhhcCC
Confidence 10000 011110000 11122333333 1 223456678999999997643 4555666554 4677
Q ss_pred ceeeeecc
Q 007481 177 QTMLFSAT 184 (602)
Q Consensus 177 q~il~SAT 184 (602)
++||+.=+
T Consensus 559 rvVlvGD~ 566 (1960)
T TIGR02760 559 KLILLNDS 566 (1960)
T ss_pred EEEEEcCh
Confidence 88877544
No 241
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.93 E-value=0.046 Score=57.04 Aligned_cols=41 Identities=20% Similarity=0.027 Sum_probs=30.6
Q ss_pred CCcHHHHHHHHHHhcC----CCEEEEcCCCchHHHHHHHHHHHHHH
Q 007481 20 KPTPIQAACIPLALTG----RDICGSAITGSGKTAAFALPTLERLL 61 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~g----~dvii~a~TGSGKT~a~~l~il~~l~ 61 (602)
.++|||...+..++.. +-.++.||.|.|||..+ ..+...++
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A-~~~A~~ll 47 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALA-ERLAAALL 47 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHH-HHHHHHHc
Confidence 4589999999988864 35789999999999754 34444444
No 242
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.91 E-value=0.033 Score=64.61 Aligned_cols=72 Identities=18% Similarity=0.139 Sum_probs=54.8
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 19 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 19 ~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
..++|-|.+++.. ...+++|.|..|||||.+...-+ ..++... +.++.++|+|+.|+..|..+.+.+..+..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ri-a~Li~~~-~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRI-AWLLSVE-NASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHH-HHHHHcC-CCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 4689999999865 35689999999999998754444 4444322 23456799999999999999999887643
No 243
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.86 E-value=0.039 Score=60.86 Aligned_cols=151 Identities=16% Similarity=0.123 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhc-----C----CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHh
Q 007481 23 PIQAACIPLALT-----G----RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 93 (602)
Q Consensus 23 ~~Q~~~i~~~l~-----g----~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~ 93 (602)
|+|.-++-.++. | +.+++.-|=|-|||.......+..+...+ ..+..+++.+++++-|..+++.+..+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g--~~~~~i~~~A~~~~QA~~~f~~~~~~i 78 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG--EPGAEIYCAANTRDQAKIVFDEAKKMI 78 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC--ccCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 788888888773 2 46888999999999765444454554332 245689999999999999999988877
Q ss_pred hcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHc-cCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhC
Q 007481 94 QFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRN-SMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172 (602)
Q Consensus 94 ~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~-~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~ 172 (602)
.............. .. .....|.....+.++..+.+ ....+=.+..++|+||+|.+.+......+..=...
T Consensus 79 ~~~~~l~~~~~~~~-----~~--~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~- 150 (477)
T PF03354_consen 79 EASPELRKRKKPKI-----IK--SNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGA- 150 (477)
T ss_pred HhChhhccchhhhh-----hh--hhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhcc-
Confidence 65321110000000 00 00112322222222222211 11222234679999999998764333333333333
Q ss_pred CCCcceeeeec
Q 007481 173 PKRRQTMLFSA 183 (602)
Q Consensus 173 ~~~~q~il~SA 183 (602)
.++++++.+|.
T Consensus 151 r~~pl~~~IST 161 (477)
T PF03354_consen 151 RPNPLIIIIST 161 (477)
T ss_pred CCCceEEEEeC
Confidence 33555555543
No 244
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.82 E-value=0.045 Score=59.72 Aligned_cols=90 Identities=22% Similarity=0.215 Sum_probs=58.9
Q ss_pred CCCCHH-HHHHHHHCCCCCCcH----HHHHHHHHHhc--CCCEEEEcCCCchHHHHHHHHHHHHHHcCCC-CCCCcEEEE
Q 007481 3 LNLSRP-LLRACEALGYSKPTP----IQAACIPLALT--GRDICGSAITGSGKTAAFALPTLERLLYRPK-RIPAIRVLI 74 (602)
Q Consensus 3 l~L~~~-ll~~l~~~g~~~pt~----~Q~~~i~~~l~--g~dvii~a~TGSGKT~a~~l~il~~l~~~~~-~~~~~~vLi 74 (602)
.++.++ |..+|+..--..++. +|.+-=..+.. ++-+||.|..|||||.+++--+ ..++++.+ ...+..|||
T Consensus 187 ~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRv-AyLlY~~R~~l~~k~vlv 265 (747)
T COG3973 187 TGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRV-AYLLYGYRGPLQAKPVLV 265 (747)
T ss_pred CchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHH-HHHHhccccccccCceEE
Confidence 444444 445666665555544 45555455554 4567799999999998874444 44444333 344556999
Q ss_pred EcChHHHHHHHHHHHHHHh
Q 007481 75 LTPTRELAVQVHSMIEKIA 93 (602)
Q Consensus 75 L~Ptr~La~Q~~~~~~~l~ 93 (602)
|.|++.+..-+.+++-.|.
T Consensus 266 l~PN~vFleYis~VLPeLG 284 (747)
T COG3973 266 LGPNRVFLEYISRVLPELG 284 (747)
T ss_pred EcCcHHHHHHHHHhchhhc
Confidence 9999999888777776653
No 245
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.81 E-value=0.074 Score=49.54 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=32.0
Q ss_pred CCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeeccCCh
Q 007481 143 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 187 (602)
Q Consensus 143 ~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SAT~~~ 187 (602)
...+++||||||.|... -...+..+++.-|....+|++|..+..
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~~ 144 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPSK 144 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GGG
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChHH
Confidence 56889999999998765 456677777777777777777766543
No 246
>PRK09183 transposase/IS protein; Provisional
Probab=95.80 E-value=0.21 Score=50.30 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=17.9
Q ss_pred HhcCCCEEEEcCCCchHHHHHH
Q 007481 32 ALTGRDICGSAITGSGKTAAFA 53 (602)
Q Consensus 32 ~l~g~dvii~a~TGSGKT~a~~ 53 (602)
+-.+.++++.||+|+|||..+.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAI 120 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHH
Confidence 4457899999999999997543
No 247
>PRK06893 DNA replication initiation factor; Validated
Probab=95.79 E-value=0.049 Score=53.83 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=27.7
Q ss_pred CcceEEEeCccccccC-CcHHHHHHHHHhCCC-CcceeeeeccCChh
Q 007481 144 DLAVLILDEADRLLEL-GFSAEIHELVRLCPK-RRQTMLFSATLTED 188 (602)
Q Consensus 144 ~l~llVlDEah~l~~~-gf~~~i~~i~~~~~~-~~q~il~SAT~~~~ 188 (602)
+.++|||||+|.+... .+...+..++..+.. ..+++++|++.++.
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 4579999999987633 234445555544433 34566777766543
No 248
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.78 E-value=0.063 Score=58.73 Aligned_cols=109 Identities=16% Similarity=0.205 Sum_probs=56.7
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHH
Q 007481 36 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~ 115 (602)
..+++.||+|+|||... -.+...+.... ++.+++++ +...+..++...+.. +
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~---~~~~v~yi-~~~~~~~~~~~~~~~-----~------------------ 200 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEKN---PNAKVVYV-TSEKFTNDFVNALRN-----N------------------ 200 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhC---CCCeEEEE-EHHHHHHHHHHHHHc-----C------------------
Confidence 45889999999999753 34444444321 23356666 444554433322221 0
Q ss_pred HcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC-cHHHHHHHHHhC-CCCcceeeeeccCChhHH
Q 007481 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-FSAEIHELVRLC-PKRRQTMLFSATLTEDVD 190 (602)
Q Consensus 116 l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g-f~~~i~~i~~~~-~~~~q~il~SAT~~~~~~ 190 (602)
+...+.+.+. .+++|||||+|.+.... ....+..++..+ ....++++.|..+|..+.
T Consensus 201 ----------~~~~~~~~~~--------~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 201 ----------TMEEFKEKYR--------SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred ----------cHHHHHHHHh--------cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 1123333333 35699999999876532 223333443332 234455555545554444
No 249
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.77 E-value=0.079 Score=60.65 Aligned_cols=129 Identities=16% Similarity=0.129 Sum_probs=63.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHH
Q 007481 37 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 116 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l 116 (602)
-+++.||||+|||+++...+........ ..+|.++..-..-+ -..+.++.|+...++.+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G----~kkV~lit~Dt~Ri-gA~eQL~~~a~~~gvpv---------------- 245 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREG----ADQLALLTTDSFRI-GALEQLRIYGRILGVPV---------------- 245 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcC----CCeEEEecCcccch-HHHHHHHHHHHhCCCCc----------------
Confidence 3568999999999864322222111211 11344443322110 02344555555445432
Q ss_pred cCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccC-CcHHHHHHHHHhCCCCcceeeeeccCCh-hHHHHHH
Q 007481 117 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLTE-DVDELIK 194 (602)
Q Consensus 117 ~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~-gf~~~i~~i~~~~~~~~q~il~SAT~~~-~~~~l~~ 194 (602)
.++.+|..+.+.+.. +.+.++|+||=+-+.... .....+..+.....+...++.+|||... .+.+++.
T Consensus 246 -----~~~~~~~~l~~al~~-----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~ 315 (767)
T PRK14723 246 -----HAVKDAADLRFALAA-----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVH 315 (767)
T ss_pred -----cccCCHHHHHHHHHH-----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHH
Confidence 223356666666653 234567888888766532 1233333333334444456677777643 3344443
Q ss_pred Hh
Q 007481 195 LS 196 (602)
Q Consensus 195 ~~ 196 (602)
.+
T Consensus 316 ~f 317 (767)
T PRK14723 316 AY 317 (767)
T ss_pred HH
Confidence 33
No 250
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.76 E-value=0.035 Score=68.03 Aligned_cols=125 Identities=24% Similarity=0.196 Sum_probs=80.0
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCce
Q 007481 20 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 99 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~ 99 (602)
+.|+-|.++|. ..+++++|.|.-|||||.+.+--++..+... ....++|+|+=|+..|..+.+.+..-....-
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~---~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~-- 73 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG---VDIDRLLVVTFTNAAAREMKERIEEALQKAL-- 73 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC---CCHhhEEEEeccHHHHHHHHHHHHHHHHHHH--
Confidence 36899999997 3688999999999999988666666665533 2334699999999999888777765432110
Q ss_pred EEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCC-CcceEEEeCccc
Q 007481 100 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLD-DLAVLILDEADR 155 (602)
Q Consensus 100 v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~-~l~llVlDEah~ 155 (602)
............+..-...-|+|-..|+..+-+.....++ +..+=|.||...
T Consensus 74 ----~~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 74 ----QQEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred ----hcCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 0000111122334444577899999998766543222111 123456888774
No 251
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.72 E-value=0.051 Score=60.84 Aligned_cols=43 Identities=16% Similarity=0.262 Sum_probs=28.2
Q ss_pred CCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeeccC
Q 007481 142 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 185 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SAT~ 185 (602)
...++++||||+|+|....|. .+..+++.-+....+|+.|.-+
T Consensus 122 ~gr~KViIIDEah~Ls~~AaN-ALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFN-AMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred cCCceEEEEEChHhcCHHHHH-HHHHhhccCCCCceEEEEeCCh
Confidence 456889999999998765443 3444555555566666665543
No 252
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.12 Score=54.65 Aligned_cols=27 Identities=33% Similarity=0.268 Sum_probs=20.2
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHHHcC
Q 007481 36 RDICGSAITGSGKTAAFALPTLERLLYR 63 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l~~~ 63 (602)
.|+++-|+||+|||++. --++..+...
T Consensus 43 ~n~~iyG~~GTGKT~~~-~~v~~~l~~~ 69 (366)
T COG1474 43 SNIIIYGPTGTGKTATV-KFVMEELEES 69 (366)
T ss_pred ccEEEECCCCCCHhHHH-HHHHHHHHhh
Confidence 47999999999999763 5555555544
No 253
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.69 E-value=0.078 Score=54.96 Aligned_cols=146 Identities=20% Similarity=0.189 Sum_probs=75.2
Q ss_pred CCCCcHHHHHHHHHHhc----CC---CEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHH
Q 007481 18 YSKPTPIQAACIPLALT----GR---DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 90 (602)
Q Consensus 18 ~~~pt~~Q~~~i~~~l~----g~---dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~ 90 (602)
++.++|+|..++..+.. |+ -+++.||.|+||+..+ ..+...++-......+ -|+.. ..+.
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA-~~lA~~LlC~~~~~~~-----~c~~c-------~~~~ 68 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVA-LALAEHVLASGPDPAA-----AQRTR-------QLIA 68 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHhCCCCCCCC-----cchHH-------HHHh
Confidence 56789999999987764 33 5889999999999754 4444444433211000 11111 1111
Q ss_pred HHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHH
Q 007481 91 KIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVR 170 (602)
Q Consensus 91 ~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~ 170 (602)
. ..++++.+.....+.... .....|.|-.--.+.+.+... ......+++|||+||.|... -.+.+..+++
T Consensus 69 ~-g~HPD~~~i~~~p~~~~~------k~~~~I~idqIR~l~~~~~~~--p~~g~~kV~iI~~ae~m~~~-AaNaLLKtLE 138 (319)
T PRK08769 69 A-GTHPDLQLVSFIPNRTGD------KLRTEIVIEQVREISQKLALT--PQYGIAQVVIVDPADAINRA-ACNALLKTLE 138 (319)
T ss_pred c-CCCCCEEEEecCCCcccc------cccccccHHHHHHHHHHHhhC--cccCCcEEEEeccHhhhCHH-HHHHHHHHhh
Confidence 1 123343322111110000 000122222222233333221 22356789999999998655 3455556677
Q ss_pred hCCCCcceeeeeccCC
Q 007481 171 LCPKRRQTMLFSATLT 186 (602)
Q Consensus 171 ~~~~~~q~il~SAT~~ 186 (602)
.-|....+|++|..+.
T Consensus 139 EPp~~~~fiL~~~~~~ 154 (319)
T PRK08769 139 EPSPGRYLWLISAQPA 154 (319)
T ss_pred CCCCCCeEEEEECChh
Confidence 7666666777766543
No 254
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.68 E-value=0.073 Score=57.37 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=23.3
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEc
Q 007481 36 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 76 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~ 76 (602)
..+++.||+|+|||... ..+...+.... ++.+++++.
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~---~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENN---PNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhC---CCCcEEEEE
Confidence 35789999999999753 44444444331 233567764
No 255
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.66 E-value=0.057 Score=62.18 Aligned_cols=89 Identities=17% Similarity=0.073 Sum_probs=62.3
Q ss_pred CcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceE
Q 007481 21 PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 100 (602)
Q Consensus 21 pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v 100 (602)
++|-|.+++.. ...+++|.|..|||||.+.+--+. .++.... ..+.++|+|+.|+..+.++.+.+.......
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~-~ll~~~~-~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~---- 73 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIA-YLIQNCG-YKARNIAAVTFTNKAAREMKERVAKTLGKG---- 73 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHH-HHHHhcC-CCHHHeEEEeccHHHHHHHHHHHHHHhCcc----
Confidence 78999998865 356899999999999987544444 4443211 234579999999999999988887653210
Q ss_pred EEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHH
Q 007481 101 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHL 134 (602)
Q Consensus 101 ~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l 134 (602)
....|.|.|...|...+
T Consensus 74 -----------------~~~~v~v~TfHs~a~~i 90 (664)
T TIGR01074 74 -----------------EARGLTISTFHTLGLDI 90 (664)
T ss_pred -----------------ccCCeEEEeHHHHHHHH
Confidence 11357788887776544
No 256
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.65 E-value=0.12 Score=55.91 Aligned_cols=127 Identities=17% Similarity=0.168 Sum_probs=66.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcC-h-HHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHH
Q 007481 37 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP-T-RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 114 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~P-t-r~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~ 114 (602)
.+++++++|+|||.+.. -+...+... +.++++++. + +.- .++++..|+...++.+.......
T Consensus 97 vI~lvG~~GsGKTTtaa-kLA~~L~~~-----g~kV~lV~~D~~R~a---a~eQL~~la~~~gvp~~~~~~~~------- 160 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAA-KLARYFKKK-----GLKVGLVAADTYRPA---AYDQLKQLAEKIGVPFYGDPDNK------- 160 (437)
T ss_pred EEEEECCCCCcHHHHHH-HHHHHHHHc-----CCeEEEecCCCCCHH---HHHHHHHHHHHcCCcEEecCCcc-------
Confidence 46689999999997642 333333322 224554443 2 222 23445555554555432111110
Q ss_pred HHcCCCcEEEECcH-HHHHHHHccCCCCCCCcceEEEeCcccccc-CCcHHHHHHHHHhCCCCcceeeeeccCChhHHHH
Q 007481 115 ALRSMPDIVVATPG-RMIDHLRNSMSVDLDDLAVLILDEADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDEL 192 (602)
Q Consensus 115 ~l~~~~~IvI~Tp~-~L~~~l~~~~~~~l~~l~llVlDEah~l~~-~gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l 192 (602)
.|. .+.+.+.... ..++||||.+-++.. .....++..+...+.+..-++.++||...+..+.
T Consensus 161 -----------d~~~i~~~al~~~~-----~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~ 224 (437)
T PRK00771 161 -----------DAVEIAKEGLEKFK-----KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQ 224 (437)
T ss_pred -----------CHHHHHHHHHHHhh-----cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHH
Confidence 111 1223333211 136899999976542 2234556666666666666778888877655544
Q ss_pred HHH
Q 007481 193 IKL 195 (602)
Q Consensus 193 ~~~ 195 (602)
+..
T Consensus 225 a~~ 227 (437)
T PRK00771 225 AKA 227 (437)
T ss_pred HHH
Confidence 443
No 257
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.64 E-value=0.051 Score=63.08 Aligned_cols=72 Identities=18% Similarity=0.155 Sum_probs=54.5
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 19 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 19 ~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
..++|-|.+++... ..+++|.|..|||||.+...-+. .++... +.++.++|+|+-|+..|.++.+.+..+..
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria-~Li~~~-~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIA-WLMQVE-NASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHH-HHHHcC-CCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 45899999998743 46899999999999987544443 444322 23456799999999999999999888653
No 258
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.63 E-value=0.098 Score=59.51 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=26.1
Q ss_pred CCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeec
Q 007481 143 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSA 183 (602)
Q Consensus 143 ~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SA 183 (602)
..++++||||+|.|....|.. +..+++.-+....+|+.|.
T Consensus 118 gr~KVIIIDEah~LT~~A~NA-LLKtLEEPP~~v~FILaTt 157 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNA-MLKTLEEPPPHVKFILATT 157 (830)
T ss_pred CCceEEEEeChhhCCHHHHHH-HHHHHHhcCCCeEEEEEEC
Confidence 457899999999987654443 4445555555555555553
No 259
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.62 E-value=0.12 Score=60.20 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=27.6
Q ss_pred CCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeee
Q 007481 143 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182 (602)
Q Consensus 143 ~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~S 182 (602)
..++++||||+|+|.... .+.+..+++..+....+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 568899999999987654 345556666666666666655
No 260
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.61 E-value=0.048 Score=50.43 Aligned_cols=54 Identities=22% Similarity=0.364 Sum_probs=44.2
Q ss_pred CCCcceEEEeCccccccCCc--HHHHHHHHHhCCCCcceeeeeccCChhHHHHHHH
Q 007481 142 LDDLAVLILDEADRLLELGF--SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 195 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~gf--~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~ 195 (602)
...+++||+||+-..++.|+ .+.+..++...|...-+|+.+-.+|+.+.+.+..
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~ 148 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADL 148 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCce
Confidence 45688999999999888775 4677788888888888888888999888877643
No 261
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.58 E-value=0.049 Score=58.53 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=26.0
Q ss_pred CcHHHHHHHHHHhcCCCEEEEcCCCchHHHHH
Q 007481 21 PTPIQAACIPLALTGRDICGSAITGSGKTAAF 52 (602)
Q Consensus 21 pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~ 52 (602)
|-......+..+..++++++.+|+|+|||..+
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 44555667777778999999999999999754
No 262
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.58 E-value=0.098 Score=57.07 Aligned_cols=110 Identities=15% Similarity=0.124 Sum_probs=57.1
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHH
Q 007481 36 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~ 115 (602)
+.+++.|++|+|||... -.+...+.... ++.+++++.+ .++...+...+..- .
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~---~~~~v~yv~~-~~f~~~~~~~l~~~----~------------------ 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNF---SDLKVSYMSG-DEFARKAVDILQKT----H------------------ 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhC---CCCeEEEEEH-HHHHHHHHHHHHHh----h------------------
Confidence 45889999999999642 34444443321 2345666655 45554444333310 0
Q ss_pred HcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC-cHHHHHHHHHhCC-CCcceeeeeccCChhH
Q 007481 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-FSAEIHELVRLCP-KRRQTMLFSATLTEDV 189 (602)
Q Consensus 116 l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g-f~~~i~~i~~~~~-~~~q~il~SAT~~~~~ 189 (602)
.+.+.+... +...++|||||+|.+.... ..+.+..++..+. ...|+|+.|-.+|..+
T Consensus 195 ---------~~~~~~~~~--------~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 ---------KEIEQFKNE--------ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred ---------hHHHHHHHH--------hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 011112222 2346699999999876432 3344444444432 3345555555555443
No 263
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.56 E-value=0.094 Score=59.58 Aligned_cols=151 Identities=19% Similarity=0.245 Sum_probs=87.8
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHhcCC--CEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHH
Q 007481 11 RACEALGYSKPTPIQAACIPLALTGR--DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSM 88 (602)
Q Consensus 11 ~~l~~~g~~~pt~~Q~~~i~~~l~g~--dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~ 88 (602)
..|..+..+.+..-|.+.+..++..+ -+++.|.-|=|||.+..|.+....... ...+++|.+|+.+-+..+...
T Consensus 205 ~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~----~~~~iiVTAP~~~nv~~Lf~f 280 (758)
T COG1444 205 RELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLA----GSVRIIVTAPTPANVQTLFEF 280 (758)
T ss_pred HHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhc----CCceEEEeCCCHHHHHHHHHH
Confidence 33455555556666666667777653 577999999999998776663222111 134799999999998888877
Q ss_pred HHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHH
Q 007481 89 IEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 168 (602)
Q Consensus 89 ~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i 168 (602)
+..-..+.|.+-.+........ ...-.....|=+-+|.... ..-++||||||=-+. ...+..+
T Consensus 281 a~~~l~~lg~~~~v~~d~~g~~--~~~~~~~~~i~y~~P~~a~-----------~~~DllvVDEAAaIp----lplL~~l 343 (758)
T COG1444 281 AGKGLEFLGYKRKVAPDALGEI--REVSGDGFRIEYVPPDDAQ-----------EEADLLVVDEAAAIP----LPLLHKL 343 (758)
T ss_pred HHHhHHHhCCccccccccccce--eeecCCceeEEeeCcchhc-----------ccCCEEEEehhhcCC----hHHHHHH
Confidence 6665555554322222110000 0000011123344444322 114689999998653 4455555
Q ss_pred HHhCCCCcceeeeeccCC
Q 007481 169 VRLCPKRRQTMLFSATLT 186 (602)
Q Consensus 169 ~~~~~~~~q~il~SAT~~ 186 (602)
+...+ .++||.|+.
T Consensus 344 ~~~~~----rv~~sTTIh 357 (758)
T COG1444 344 LRRFP----RVLFSTTIH 357 (758)
T ss_pred HhhcC----ceEEEeeec
Confidence 55443 489999985
No 264
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.56 E-value=0.19 Score=52.86 Aligned_cols=127 Identities=20% Similarity=0.215 Sum_probs=61.3
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcC-h-HH-HHHHHHHHHHHHhhcCCceEEEEECCCCHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP-T-RE-LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM 111 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~P-t-r~-La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~ 111 (602)
++.+++.+|+|+|||....-.+ ..+... +.+|.+++- + |. -+.| +..++...++.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA-~~l~~~-----g~~V~lItaDtyR~gAveQ----Lk~yae~lgvpv~---------- 265 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLG-WQLLKQ-----NRTVGFITTDTFRSGAVEQ----FQGYADKLDVELI---------- 265 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHH-HHHHHc-----CCeEEEEeCCccCccHHHH----HHHHhhcCCCCEE----------
Confidence 4567799999999997643222 233222 224544432 2 22 1233 4444443443222
Q ss_pred HHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccC-CcHHHHHHHHHhCCCCcceeeeeccCC-hhH
Q 007481 112 QETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLT-EDV 189 (602)
Q Consensus 112 ~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~-gf~~~i~~i~~~~~~~~q~il~SAT~~-~~~ 189 (602)
++.+|..+.+.+.... .....++|+||=+-+.... .....+..+...+.+..-++.+|||.. .++
T Consensus 266 -----------~~~dp~dL~~al~~l~--~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~ 332 (407)
T PRK12726 266 -----------VATSPAELEEAVQYMT--YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADV 332 (407)
T ss_pred -----------ecCCHHHHHHHHHHHH--hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHH
Confidence 2234555555444211 1234678888888765432 133444444444443333445566544 244
Q ss_pred HHHHH
Q 007481 190 DELIK 194 (602)
Q Consensus 190 ~~l~~ 194 (602)
.+...
T Consensus 333 ~~i~~ 337 (407)
T PRK12726 333 MTILP 337 (407)
T ss_pred HHHHH
Confidence 44333
No 265
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.54 E-value=0.11 Score=54.76 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=28.6
Q ss_pred CCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeecc
Q 007481 142 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 184 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SAT 184 (602)
...+.++||||||.|.... .+.+..+++.-+....++++|..
T Consensus 139 ~g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit~~ 180 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILISHS 180 (351)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEECC
Confidence 4568899999999986553 34566666665556666666543
No 266
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.52 E-value=0.068 Score=61.36 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=17.3
Q ss_pred CE-EEEcCCCchHHHHHHHHHHHHHH
Q 007481 37 DI-CGSAITGSGKTAAFALPTLERLL 61 (602)
Q Consensus 37 dv-ii~a~TGSGKT~a~~l~il~~l~ 61 (602)
++ .|.|+||+|||++. --++..+.
T Consensus 782 nvLYIyG~PGTGKTATV-K~VLrELq 806 (1164)
T PTZ00112 782 QILYISGMPGTGKTATV-YSVIQLLQ 806 (1164)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 45 49999999999874 44555543
No 267
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.51 E-value=0.062 Score=54.20 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
.++++.||+|+|||..+
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 47899999999999754
No 268
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.44 E-value=0.14 Score=48.50 Aligned_cols=48 Identities=27% Similarity=0.119 Sum_probs=29.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHH
Q 007481 38 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 92 (602)
Q Consensus 38 vii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l 92 (602)
+++.||+|+|||... +-++...... +.+++|++. .+...++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~-~~~~~~~~~~-----g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFA-LQFLYAGLAR-----GEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHH-HHHHHHHHHC-----CCcEEEEEC-CCCHHHHHHHHHHc
Confidence 689999999999754 3333333322 234777754 35566666666654
No 269
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.40 E-value=0.12 Score=51.23 Aligned_cols=16 Identities=19% Similarity=0.150 Sum_probs=14.3
Q ss_pred CCEEEEcCCCchHHHH
Q 007481 36 RDICGSAITGSGKTAA 51 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a 51 (602)
..++++||+|+|||..
T Consensus 46 ~~l~l~Gp~G~GKThL 61 (235)
T PRK08084 46 GYIYLWSREGAGRSHL 61 (235)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5789999999999975
No 270
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.40 E-value=0.12 Score=58.16 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=26.5
Q ss_pred CCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeee
Q 007481 142 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~S 182 (602)
+...+++||||+|.|.... .+.+...++..+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4567899999999987543 334444555555666666654
No 271
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.38 E-value=0.017 Score=51.10 Aligned_cols=14 Identities=36% Similarity=0.375 Sum_probs=12.5
Q ss_pred EEEEcCCCchHHHH
Q 007481 38 ICGSAITGSGKTAA 51 (602)
Q Consensus 38 vii~a~TGSGKT~a 51 (602)
+++.||+|+|||..
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 58999999999974
No 272
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.38 E-value=0.32 Score=52.37 Aligned_cols=130 Identities=12% Similarity=0.148 Sum_probs=66.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcC--hHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHH
Q 007481 38 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP--TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115 (602)
Q Consensus 38 vii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~P--tr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~ 115 (602)
++++|++|+|||++.. -+...+ ... +.+|++++. .|.-+. .+++.++...++.+.....+.+.....
T Consensus 103 i~lvG~~GvGKTTtaa-KLA~~l-~~~----G~kV~lV~~D~~R~aA~---eQLk~~a~~~~vp~~~~~~~~dp~~i~-- 171 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCT-KLAYYY-QRK----GFKPCLVCADTFRAGAF---DQLKQNATKARIPFYGSYTESDPVKIA-- 171 (429)
T ss_pred EEEECCCCCCHHHHHH-HHHHHH-HHC----CCCEEEEcCcccchhHH---HHHHHHhhccCCeEEeecCCCCHHHHH--
Confidence 4589999999997532 222222 221 234655543 243332 345555555566554433322211000
Q ss_pred HcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccC-CcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHH
Q 007481 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIK 194 (602)
Q Consensus 116 l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~-gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~ 194 (602)
..-+..+.. ..+++||||=+.++... ....++..+...+.+..-++.++||...+....+.
T Consensus 172 ------------~~~l~~~~~------~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~ 233 (429)
T TIGR01425 172 ------------SEGVEKFKK------ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAK 233 (429)
T ss_pred ------------HHHHHHHHh------CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHH
Confidence 000111211 23568888888775432 23455555555565565677788887766555554
Q ss_pred Hh
Q 007481 195 LS 196 (602)
Q Consensus 195 ~~ 196 (602)
.+
T Consensus 234 ~F 235 (429)
T TIGR01425 234 AF 235 (429)
T ss_pred HH
Confidence 43
No 273
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.37 E-value=0.39 Score=53.98 Aligned_cols=76 Identities=13% Similarity=0.209 Sum_probs=56.0
Q ss_pred HHCCCCCCcHHHHHHHHHHhc---CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHH
Q 007481 14 EALGYSKPTPIQAACIPLALT---GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 90 (602)
Q Consensus 14 ~~~g~~~pt~~Q~~~i~~~l~---g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~ 90 (602)
..++...|.|.=.+-|..+++ .+-.++.+|-|-|||.+..+.+...+.. .+.+++|.+|...-+.++++.+.
T Consensus 163 ~~~np~~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f-----~Gi~IlvTAH~~~ts~evF~rv~ 237 (752)
T PHA03333 163 VAFNPEAPSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF-----LEIDIVVQAQRKTMCLTLYNRVE 237 (752)
T ss_pred hhcCcCCCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh-----cCCeEEEECCChhhHHHHHHHHH
Confidence 345566678888888877775 4677889999999998755444433321 23579999999999999888877
Q ss_pred HHhh
Q 007481 91 KIAQ 94 (602)
Q Consensus 91 ~l~~ 94 (602)
.+..
T Consensus 238 ~~le 241 (752)
T PHA03333 238 TVVH 241 (752)
T ss_pred HHHH
Confidence 7765
No 274
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.35 E-value=0.16 Score=56.17 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=26.8
Q ss_pred CCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeee
Q 007481 143 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182 (602)
Q Consensus 143 ~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~S 182 (602)
..++++||||||+|....| +.+..+++..|....+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4678999999999876544 34445666666666666655
No 275
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.31 E-value=0.24 Score=50.95 Aligned_cols=67 Identities=33% Similarity=0.335 Sum_probs=43.9
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHhc-CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHH
Q 007481 10 LRACEALGYSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 82 (602)
Q Consensus 10 l~~l~~~g~~~pt~~Q~~~i~~~l~-g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La 82 (602)
+..|...|+ +++-|...+..++. +++++++|+||||||.. +-.++..+...+ +..+++++=.+.|+.
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~---~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKND---PTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccC---CCceEEEECCchhhc
Confidence 344445554 45666777766555 67999999999999974 344555443321 234688888888873
No 276
>PLN03025 replication factor C subunit; Provisional
Probab=95.31 E-value=0.21 Score=51.92 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=24.6
Q ss_pred CCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeee
Q 007481 143 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182 (602)
Q Consensus 143 ~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~S 182 (602)
..+.++||||+|.|.... ...+..+++..+....+++.+
T Consensus 98 ~~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CCeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEEEe
Confidence 347899999999986543 444555555555544444433
No 277
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.31 E-value=0.11 Score=54.34 Aligned_cols=40 Identities=15% Similarity=0.278 Sum_probs=25.9
Q ss_pred CCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeec
Q 007481 143 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSA 183 (602)
Q Consensus 143 ~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SA 183 (602)
....+|||||+|.+.+. ....+..++...+....+|+.+.
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEeC
Confidence 45679999999987543 34455566666665565555443
No 278
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.30 E-value=0.31 Score=49.33 Aligned_cols=128 Identities=17% Similarity=0.139 Sum_probs=67.8
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcC-hH--HHHHHHHHHHHHHhhcCCceEEEEECCCCHHHH
Q 007481 36 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP-TR--ELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 112 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~P-tr--~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~ 112 (602)
..+++.+++|+|||..+.+.+ ..+... +.++.++.. +. ..+.||.. ++...++.+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~-~~l~~~-----~~~v~~i~~D~~ri~~~~ql~~----~~~~~~~~~~----------- 134 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMA-WQFHGK-----KKTVGFITTDHSRIGTVQQLQD----YVKTIGFEVI----------- 134 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHH-HHHHHc-----CCeEEEEecCCCCHHHHHHHHH----HhhhcCceEE-----------
Confidence 456799999999998654333 222221 223444433 22 34445443 3332233221
Q ss_pred HHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccC-CcHHHHHHHHHhCCCCcceeeeeccCC-hhHH
Q 007481 113 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLT-EDVD 190 (602)
Q Consensus 113 ~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~-gf~~~i~~i~~~~~~~~q~il~SAT~~-~~~~ 190 (602)
...+|..+.+.+..- -....+++||||-+-+.... .....+..++....+..-++.+|||.. .+..
T Consensus 135 ----------~~~~~~~l~~~l~~l--~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~ 202 (270)
T PRK06731 135 ----------AVRDEAAMTRALTYF--KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMI 202 (270)
T ss_pred ----------ecCCHHHHHHHHHHH--HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHH
Confidence 113455555544321 01234689999999886532 233445555555544444566899875 4666
Q ss_pred HHHHHh
Q 007481 191 ELIKLS 196 (602)
Q Consensus 191 ~l~~~~ 196 (602)
+.+..+
T Consensus 203 ~~~~~f 208 (270)
T PRK06731 203 EIITNF 208 (270)
T ss_pred HHHHHh
Confidence 666655
No 279
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.30 E-value=0.38 Score=53.91 Aligned_cols=47 Identities=15% Similarity=0.211 Sum_probs=28.2
Q ss_pred CcceEEEeCccccccCC-cHHHHHHHHHhCCC-CcceeeeeccCChhHH
Q 007481 144 DLAVLILDEADRLLELG-FSAEIHELVRLCPK-RRQTMLFSATLTEDVD 190 (602)
Q Consensus 144 ~l~llVlDEah~l~~~g-f~~~i~~i~~~~~~-~~q~il~SAT~~~~~~ 190 (602)
++++||||++|.+.... ....+..++..+.. ..++|+.|-..+.++.
T Consensus 377 ~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 377 EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 36799999999886543 23444455544433 4566665555555543
No 280
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.25 E-value=0.11 Score=56.38 Aligned_cols=16 Identities=25% Similarity=0.065 Sum_probs=13.9
Q ss_pred CEEEEcCCCchHHHHH
Q 007481 37 DICGSAITGSGKTAAF 52 (602)
Q Consensus 37 dvii~a~TGSGKT~a~ 52 (602)
.+|++||.|+|||.++
T Consensus 42 a~Lf~GP~GtGKTTlA 57 (484)
T PRK14956 42 AYIFFGPRGVGKTTIA 57 (484)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3689999999999864
No 281
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.23 E-value=0.081 Score=49.55 Aligned_cols=54 Identities=24% Similarity=0.385 Sum_probs=44.0
Q ss_pred CCCcceEEEeCccccccCCcH--HHHHHHHHhCCCCcceeeeeccCChhHHHHHHH
Q 007481 142 LDDLAVLILDEADRLLELGFS--AEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 195 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~gf~--~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~ 195 (602)
-..+++||+||+-..++.|+. +.+..++...|....+|+..-.+|+.+.+.+..
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCce
Confidence 356889999999998888854 567778888888888888888999888877654
No 282
>PF13173 AAA_14: AAA domain
Probab=95.22 E-value=0.17 Score=45.02 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=23.8
Q ss_pred cceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeee
Q 007481 145 LAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182 (602)
Q Consensus 145 l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~S 182 (602)
-.+|+|||+|.+.+ +...+..+.... ...++++.+
T Consensus 62 ~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tg 96 (128)
T PF13173_consen 62 KKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTG 96 (128)
T ss_pred CcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEc
Confidence 34899999999875 577777777754 334444433
No 283
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.21 E-value=0.32 Score=53.36 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=25.0
Q ss_pred CCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeee
Q 007481 142 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~S 182 (602)
....+++||||+|.|....| +.+...++.-|....+|+.+
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEEEe
Confidence 45688999999998866433 33444455545444445444
No 284
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.20 E-value=0.29 Score=52.35 Aligned_cols=124 Identities=18% Similarity=0.173 Sum_probs=62.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEE-cCh-HHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHH
Q 007481 38 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL-TPT-RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115 (602)
Q Consensus 38 vii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL-~Pt-r~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~ 115 (602)
+++.+|+|+|||....-.+....... +.+|.++ +.+ |..+. ..+..++...++.+..
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~-----G~~V~Lit~Dt~R~aA~---eQLk~yAe~lgvp~~~------------- 284 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHM-----GKSVSLYTTDNYRIAAI---EQLKRYADTMGMPFYP------------- 284 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhc-----CCeEEEecccchhhhHH---HHHHHHHHhcCCCeee-------------
Confidence 66899999999976433332222221 2234333 333 33322 2455555444443211
Q ss_pred HcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccccc-CCcHHHHHHHHHhCC---CCcceeeeeccCCh-hHH
Q 007481 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-LGFSAEIHELVRLCP---KRRQTMLFSATLTE-DVD 190 (602)
Q Consensus 116 l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~-~gf~~~i~~i~~~~~---~~~q~il~SAT~~~-~~~ 190 (602)
+..+..+.+.+.. ...++||||=+.+... ..-...+..++..+. +..-++.+|||... ++.
T Consensus 285 --------~~~~~~l~~~l~~------~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~ 350 (432)
T PRK12724 285 --------VKDIKKFKETLAR------DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTL 350 (432)
T ss_pred --------hHHHHHHHHHHHh------CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHH
Confidence 1112334444432 3467899998776542 223345555555442 22346777998876 455
Q ss_pred HHHHHh
Q 007481 191 ELIKLS 196 (602)
Q Consensus 191 ~l~~~~ 196 (602)
+.+..+
T Consensus 351 ~~~~~f 356 (432)
T PRK12724 351 TVLKAY 356 (432)
T ss_pred HHHHHh
Confidence 555444
No 285
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.19 E-value=0.18 Score=57.04 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=26.1
Q ss_pred CCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeee
Q 007481 142 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~S 182 (602)
+...+++||||+|.|....+ ..+..+++..+....+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~A~-NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHHH-HHHHHHHHhCCCCcEEEEEe
Confidence 35678999999998765433 34455555555566666655
No 286
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.14 E-value=0.24 Score=47.08 Aligned_cols=147 Identities=12% Similarity=0.073 Sum_probs=80.7
Q ss_pred cCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHH
Q 007481 34 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 113 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~ 113 (602)
....+++..++|.|||.+++-.++..+. .+.+|+|+-=..--. -+.+...+....++.+.. .+.... +
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g------~G~~V~ivQFlKg~~--~~GE~~~l~~l~~v~~~~--~g~~~~--~ 88 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVG------HGKKVGVVQFIKGAW--STGERNLLEFGGGVEFHV--MGTGFT--W 88 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHH------CCCeEEEEEEecCCC--ccCHHHHHhcCCCcEEEE--CCCCCc--c
Confidence 4568999999999999987666665553 344566663211100 011122221212333222 111100 0
Q ss_pred HHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCc--HHHHHHHHHhCCCCcceeeeeccCChhHHH
Q 007481 114 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF--SAEIHELVRLCPKRRQTMLFSATLTEDVDE 191 (602)
Q Consensus 114 ~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf--~~~i~~i~~~~~~~~q~il~SAT~~~~~~~ 191 (602)
. ....+--+......++.... .+.-..+++||+||+-..++.|+ .+.+..++...|...-+|+..-.+|+++.+
T Consensus 89 ~--~~~~~e~~~~~~~~~~~a~~--~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie 164 (191)
T PRK05986 89 E--TQDRERDIAAAREGWEEAKR--MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIE 164 (191)
T ss_pred c--CCCcHHHHHHHHHHHHHHHH--HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHH
Confidence 0 00000000111122332222 12235688999999999998886 466777788888887788888889988887
Q ss_pred HHHHh
Q 007481 192 LIKLS 196 (602)
Q Consensus 192 l~~~~ 196 (602)
.+...
T Consensus 165 ~ADlV 169 (191)
T PRK05986 165 AADLV 169 (191)
T ss_pred hCchh
Confidence 76543
No 287
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.12 E-value=0.1 Score=54.64 Aligned_cols=18 Identities=22% Similarity=0.181 Sum_probs=15.4
Q ss_pred CCEEEEcCCCchHHHHHH
Q 007481 36 RDICGSAITGSGKTAAFA 53 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~ 53 (602)
.+.|+++|+|+|||..+-
T Consensus 49 ~SmIl~GPPG~GKTTlA~ 66 (436)
T COG2256 49 HSMILWGPPGTGKTTLAR 66 (436)
T ss_pred ceeEEECCCCCCHHHHHH
Confidence 489999999999998643
No 288
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.11 E-value=0.13 Score=54.35 Aligned_cols=148 Identities=18% Similarity=0.157 Sum_probs=72.0
Q ss_pred HHHHHHHHHh----cC---CCEEEEcCCCchHHHHHHHHHHHHHHcCCC-CCC----CcEEEEEcChHHHHHHHHHHHHH
Q 007481 24 IQAACIPLAL----TG---RDICGSAITGSGKTAAFALPTLERLLYRPK-RIP----AIRVLILTPTRELAVQVHSMIEK 91 (602)
Q Consensus 24 ~Q~~~i~~~l----~g---~dvii~a~TGSGKT~a~~l~il~~l~~~~~-~~~----~~~vLiL~Ptr~La~Q~~~~~~~ 91 (602)
.|..++..+. .| +-.++.||.|+||+..+ ..+...++-... ... .+..+-+|+....|.++ ..
T Consensus 23 Gq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA-~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i----~~ 97 (365)
T PRK07471 23 GHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLA-YRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRI----AA 97 (365)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHH-HHHHHHHhCCCCCCCCccccccccccCCCCChHHHHH----Hc
Confidence 4555554443 33 35889999999999764 444555544321 111 12244555554433322 21
Q ss_pred HhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHh
Q 007481 92 IAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL 171 (602)
Q Consensus 92 l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~ 171 (602)
..++++.+ +......... .....|.|-..-.+.+.+.. ........++||||+|.|... -.+.+...++.
T Consensus 98 -~~HPDl~~--i~~~~~~~~~----~~~~~I~VdqiR~l~~~~~~--~~~~~~~kVviIDead~m~~~-aanaLLK~LEe 167 (365)
T PRK07471 98 -GAHGGLLT--LERSWNEKGK----RLRTVITVDEVRELISFFGL--TAAEGGWRVVIVDTADEMNAN-AANALLKVLEE 167 (365)
T ss_pred -cCCCCeEE--Eecccccccc----cccccccHHHHHHHHHHhCc--CcccCCCEEEEEechHhcCHH-HHHHHHHHHhc
Confidence 12334432 2211000000 00123333332223333322 223456789999999988654 34455566666
Q ss_pred CCCCcceeeeeccCC
Q 007481 172 CPKRRQTMLFSATLT 186 (602)
Q Consensus 172 ~~~~~q~il~SAT~~ 186 (602)
.+....+|++|..+.
T Consensus 168 pp~~~~~IL~t~~~~ 182 (365)
T PRK07471 168 PPARSLFLLVSHAPA 182 (365)
T ss_pred CCCCeEEEEEECCch
Confidence 555666666665553
No 289
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.11 E-value=0.098 Score=60.88 Aligned_cols=72 Identities=22% Similarity=0.244 Sum_probs=54.3
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 19 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 19 ~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
..++|-|.+++.. ...+++|.|..|||||.+...-+.. ++... +..+.++|+|+-|+..|..+.+.+..+..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~-Li~~~-~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAH-LIAEK-NVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHH-HHHcC-CCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 4689999999975 3568999999999999875444443 33322 13455799999999999999888887643
No 290
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.11 E-value=0.11 Score=53.78 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=26.8
Q ss_pred CcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeec
Q 007481 144 DLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSA 183 (602)
Q Consensus 144 ~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SA 183 (602)
..++|||||+|.+........+..+++..+...++|+.|.
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 3568999999988433345566666777666666665443
No 291
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.10 E-value=0.061 Score=54.46 Aligned_cols=145 Identities=14% Similarity=0.055 Sum_probs=67.8
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHH
Q 007481 7 RPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH 86 (602)
Q Consensus 7 ~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~ 86 (602)
+.++++|...|.++..|---+.+--+..|.-+++.|++|+|||... +-++..+... .+.+|+++.-- +-..++.
T Consensus 2 ~~~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~-~~~~~~~~~~----~g~~vl~iS~E-~~~~~~~ 75 (271)
T cd01122 2 EEIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFL-REYALDLITQ----HGVRVGTISLE-EPVVRTA 75 (271)
T ss_pred chhhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHH-HHHHHHHHHh----cCceEEEEEcc-cCHHHHH
Confidence 3566777655554444333333333445678889999999999643 3333333222 13357777542 2233444
Q ss_pred HHHHHHhhcCCceEEEEECCCCHHHHH---HHHcCCCcEEEE------CcHHHHHHHHccCCCCCCCcceEEEeCccccc
Q 007481 87 SMIEKIAQFTDIRCCLVVGGLSTKMQE---TALRSMPDIVVA------TPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 157 (602)
Q Consensus 87 ~~~~~l~~~~~i~v~~~~g~~~~~~~~---~~l~~~~~IvI~------Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~ 157 (602)
..+.......++............... ..+...+.+++- |+..++..+... ..-..+++||||..+.+.
T Consensus 76 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~--~~~~~~~~vvID~l~~l~ 153 (271)
T cd01122 76 RRLLGQYAGKRLHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYM--AVSHGIQHIIIDNLSIMV 153 (271)
T ss_pred HHHHHHHhCCCcccCCccccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHH--HhcCCceEEEECCHHHHh
Confidence 444332111121110000011111111 122222333322 445555555431 111247899999999876
Q ss_pred cC
Q 007481 158 EL 159 (602)
Q Consensus 158 ~~ 159 (602)
..
T Consensus 154 ~~ 155 (271)
T cd01122 154 SD 155 (271)
T ss_pred cc
Confidence 43
No 292
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.09 E-value=0.075 Score=55.11 Aligned_cols=65 Identities=31% Similarity=0.297 Sum_probs=44.3
Q ss_pred HHHHCCCCCCcHHHHHHHHHHhc-CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHH
Q 007481 12 ACEALGYSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 82 (602)
Q Consensus 12 ~l~~~g~~~pt~~Q~~~i~~~l~-g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La 82 (602)
.+...|+ +++.|.+.+..++. +.+++++|+||||||.. +-.++..+...+ +..+++++=.+.||.
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~---~~~rivtiEd~~El~ 187 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA---PEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC---CCceEEEecCCcccc
Confidence 3445554 56788888776665 57899999999999964 455555554322 234688888788873
No 293
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.06 E-value=0.14 Score=50.38 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=24.3
Q ss_pred cceEEEeCccccccCCcHHHHHHHHHhCCCCcc-eeeeeccCC
Q 007481 145 LAVLILDEADRLLELGFSAEIHELVRLCPKRRQ-TMLFSATLT 186 (602)
Q Consensus 145 l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q-~il~SAT~~ 186 (602)
.++|||||+|.+... -...+..++........ +++++++.+
T Consensus 91 ~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~ 132 (227)
T PRK08903 91 AELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAA 132 (227)
T ss_pred CCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 458999999987543 23444445544333333 467777654
No 294
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.05 E-value=0.16 Score=51.33 Aligned_cols=32 Identities=19% Similarity=0.127 Sum_probs=23.6
Q ss_pred CcHHHHHHH----HHHhcCCCEEEEcCCCchHHHHH
Q 007481 21 PTPIQAACI----PLALTGRDICGSAITGSGKTAAF 52 (602)
Q Consensus 21 pt~~Q~~~i----~~~l~g~dvii~a~TGSGKT~a~ 52 (602)
+||..++.+ ..+..|.++++.||+|+|||..+
T Consensus 3 ~t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 3 ETDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLA 38 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHH
Confidence 345555554 44556899999999999999764
No 295
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.05 E-value=0.27 Score=53.52 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=24.0
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcC
Q 007481 36 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 77 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~P 77 (602)
..+++.||+|+|||... -.+...+.... ++.+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~~~---~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQNE---PDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHHhC---CCCeEEEEEH
Confidence 46889999999999753 34444444321 2345777654
No 296
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.02 E-value=0.19 Score=55.83 Aligned_cols=40 Identities=15% Similarity=0.167 Sum_probs=26.5
Q ss_pred CCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeee
Q 007481 142 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~S 182 (602)
.....++||||||+|.... .+.+..+++..|....+|+.|
T Consensus 117 ~g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3467899999999987643 344555566555555566655
No 297
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.99 E-value=0.11 Score=51.05 Aligned_cols=107 Identities=20% Similarity=0.220 Sum_probs=57.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHH
Q 007481 37 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 116 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l 116 (602)
.+++.||+|+|||.. +-.+...+.... ++.+|+++... +........+..
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~---~~~~v~y~~~~-~f~~~~~~~~~~------------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQH---PGKRVVYLSAE-EFIREFADALRD------------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHC---TTS-EEEEEHH-HHHHHHHHHHHT-------------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhcc---ccccceeecHH-HHHHHHHHHHHc-------------------------
Confidence 478999999999974 344444444321 23456666433 443333333321
Q ss_pred cCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC-cHHHHHHHHHhCC-CCcceeeeeccCChhH
Q 007481 117 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-FSAEIHELVRLCP-KRRQTMLFSATLTEDV 189 (602)
Q Consensus 117 ~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g-f~~~i~~i~~~~~-~~~q~il~SAT~~~~~ 189 (602)
.....+.+.+. ..++|+||.+|.+.... +...+..++..+. ...++|+.|..+|.++
T Consensus 86 --------~~~~~~~~~~~--------~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 86 --------GEIEEFKDRLR--------SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp --------TSHHHHHHHHC--------TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred --------ccchhhhhhhh--------cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 01223333333 36799999999986542 3444555544432 3456777776766553
No 298
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.97 E-value=0.2 Score=53.74 Aligned_cols=131 Identities=17% Similarity=0.170 Sum_probs=64.5
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 114 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~ 114 (602)
|.-+.+.||||+|||......+-..+..... ..-.++.+.+.-.+ ..+++..|+...++.+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~---~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~------------ 253 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGA---DKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRS------------ 253 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC---CeEEEEecCCcchh--HHHHHHHHHHHcCCceec------------
Confidence 4456799999999998643222222222111 11135555553332 233455555555554332
Q ss_pred HHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccC-CcHHHHHHHHHhCCCCcceeeeeccCChh-HHHH
Q 007481 115 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLTED-VDEL 192 (602)
Q Consensus 115 ~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~-gf~~~i~~i~~~~~~~~q~il~SAT~~~~-~~~l 192 (602)
+.++..+...+.. +.+.++++||.+-+.... .....+..+.........++.+|||.... +.+.
T Consensus 254 ---------v~~~~dl~~al~~-----l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~ 319 (420)
T PRK14721 254 ---------IKDIADLQLMLHE-----LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV 319 (420)
T ss_pred ---------CCCHHHHHHHHHH-----hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH
Confidence 2233333333322 345678999987554321 12233333333233344567789987544 5555
Q ss_pred HHHh
Q 007481 193 IKLS 196 (602)
Q Consensus 193 ~~~~ 196 (602)
+..+
T Consensus 320 ~~~f 323 (420)
T PRK14721 320 ISAY 323 (420)
T ss_pred HHHh
Confidence 5444
No 299
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.96 E-value=0.23 Score=55.83 Aligned_cols=39 Identities=15% Similarity=0.278 Sum_probs=25.3
Q ss_pred CCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeee
Q 007481 143 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182 (602)
Q Consensus 143 ~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~S 182 (602)
..++++||||+|+|....+ ..+..+++..+....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCcEEEEEE
Confidence 4578999999998876543 34555555555555555544
No 300
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.93 E-value=0.11 Score=52.96 Aligned_cols=17 Identities=35% Similarity=0.329 Sum_probs=14.0
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
+.++++||||+|||...
T Consensus 195 ~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTL 211 (282)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45779999999999763
No 301
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=94.93 E-value=0.088 Score=56.55 Aligned_cols=144 Identities=19% Similarity=0.200 Sum_probs=78.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHH-HHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHH
Q 007481 37 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE-LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~-La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~ 115 (602)
-.++.|..|||||.+..+-++..+.... ++.+++++-|+.. |..-++..+.......++....-....+. ...
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~---~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~---~i~ 76 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK---KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM---EIK 76 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC---CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc---EEE
Confidence 3578999999999888777777776641 2457899999987 55556666665544434321111111100 000
Q ss_pred HcC-CCcEEEECc-HHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCC--CCcceeeeeccCChhHHH
Q 007481 116 LRS-MPDIVVATP-GRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP--KRRQTMLFSATLTEDVDE 191 (602)
Q Consensus 116 l~~-~~~IvI~Tp-~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~--~~~q~il~SAT~~~~~~~ 191 (602)
+.. +..|++..- +...+ +. ....+.++++|||..+... .+..++..+. .....+++|.||......
T Consensus 77 ~~~~g~~i~f~g~~d~~~~-ik-----~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~~~w 146 (396)
T TIGR01547 77 ILNTGKKFIFKGLNDKPNK-LK-----SGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESPLHW 146 (396)
T ss_pred ecCCCeEEEeecccCChhH-hh-----CcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCCccH
Confidence 111 334444332 11111 11 2233689999999998544 2333332232 222358899998754344
Q ss_pred HHHHh
Q 007481 192 LIKLS 196 (602)
Q Consensus 192 l~~~~ 196 (602)
+...+
T Consensus 147 ~~~~f 151 (396)
T TIGR01547 147 VKKRF 151 (396)
T ss_pred HHHHH
Confidence 43433
No 302
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.92 E-value=0.076 Score=55.11 Aligned_cols=66 Identities=30% Similarity=0.350 Sum_probs=44.7
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHh-cCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 10 LRACEALGYSKPTPIQAACIPLAL-TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 10 l~~l~~~g~~~pt~~Q~~~i~~~l-~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+..|...|+ +++.|.+.+..+. .+++++++|+||||||.. +-.++..+...+ +..+++++-.+.||
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~---~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQD---PTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcC---CCceEEEEcCCCcc
Confidence 344555565 4677888887655 468999999999999954 455555443221 23468888888877
No 303
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.90 E-value=0.13 Score=55.15 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=18.6
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHHH
Q 007481 36 RDICGSAITGSGKTAAFALPTLERLL 61 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l~ 61 (602)
.++++.||+|+|||.. +--++..+.
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l~ 80 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEELE 80 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 5799999999999975 344555443
No 304
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.89 E-value=0.24 Score=52.59 Aligned_cols=40 Identities=18% Similarity=0.284 Sum_probs=24.2
Q ss_pred CCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeee
Q 007481 142 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~S 182 (602)
.....++||||+|.+....+. .+...++..|....+|+.|
T Consensus 117 ~~~~kviIIDEa~~l~~~a~n-aLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 117 KSRFKVYLIDEVHMLSRHSFN-ALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred cCCceEEEEEChhhcCHHHHH-HHHHHHhcCCCCeEEEEEc
Confidence 345789999999998754333 3334444444455555544
No 305
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.89 E-value=0.16 Score=64.93 Aligned_cols=62 Identities=26% Similarity=0.360 Sum_probs=44.8
Q ss_pred CCCcHHHHHHHHHHhcC--CCEEEEcCCCchHHHHHH---HHHHHHHHcCCCCCCCcEEEEEcChHHHHHHH
Q 007481 19 SKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFA---LPTLERLLYRPKRIPAIRVLILTPTRELAVQV 85 (602)
Q Consensus 19 ~~pt~~Q~~~i~~~l~g--~dvii~a~TGSGKT~a~~---l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~ 85 (602)
..+++.|.+++..++.+ +-++|.++.|+|||.... -++.+.+. . .+.+|+.++||..-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~-~----~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFE-S----EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHH-h----cCCeEEEEeChHHHHHHH
Confidence 46899999999999876 456689999999997531 22333222 1 345799999998777655
No 306
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.85 E-value=0.21 Score=54.34 Aligned_cols=48 Identities=10% Similarity=0.218 Sum_probs=28.0
Q ss_pred CcceEEEeCccccccCC-cHHHHHHHHHhC-CCCcceeeeeccCChhHHH
Q 007481 144 DLAVLILDEADRLLELG-FSAEIHELVRLC-PKRRQTMLFSATLTEDVDE 191 (602)
Q Consensus 144 ~l~llVlDEah~l~~~g-f~~~i~~i~~~~-~~~~q~il~SAT~~~~~~~ 191 (602)
..++|+|||+|.+.... ....+..++..+ ....|+|+.|-+.|..+..
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~ 251 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKA 251 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhh
Confidence 46799999999986532 233444443322 2345666666566655543
No 307
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.82 E-value=0.16 Score=58.56 Aligned_cols=77 Identities=19% Similarity=0.192 Sum_probs=65.0
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHh----hcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc-cccccCcCCccEEE
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFG----LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-AARGLDIIGVQTVI 316 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~----~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~-~~~GlDip~v~~VI 316 (602)
.+.+++|.++|...|...+..+. ..|+++..+||+++..+|.+++..+.+|+.+|+|+|.. +...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 45689999999999987766554 44789999999999999999999999999999999964 44567788999988
Q ss_pred Ec
Q 007481 317 NY 318 (602)
Q Consensus 317 ~~ 318 (602)
.=
T Consensus 389 ID 390 (681)
T PRK10917 389 ID 390 (681)
T ss_pred Ee
Confidence 53
No 308
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.82 E-value=0.12 Score=50.41 Aligned_cols=16 Identities=25% Similarity=0.131 Sum_probs=14.1
Q ss_pred CEEEEcCCCchHHHHH
Q 007481 37 DICGSAITGSGKTAAF 52 (602)
Q Consensus 37 dvii~a~TGSGKT~a~ 52 (602)
++|++||+|.|||..+
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 6899999999999753
No 309
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.78 E-value=0.0082 Score=56.43 Aligned_cols=125 Identities=22% Similarity=0.231 Sum_probs=53.7
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcC
Q 007481 39 CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 118 (602)
Q Consensus 39 ii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~ 118 (602)
|+.|+-|-|||.+..+.+...+... ..+++|.+|+.+-+..+++.+..-....+++....... .........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~-----~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~ 72 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG-----KIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRI---GQIIKLRFN 72 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS----------EEEE-SS--S-HHHHHCC-----------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc-----CceEEEecCCHHHHHHHHHHHHhhcccccccccccccc---ccccccccc
Confidence 5789999999987555543322211 24699999999988777666554333222221000000 000000112
Q ss_pred CCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeeccCCh
Q 007481 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 187 (602)
Q Consensus 119 ~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SAT~~~ 187 (602)
...|-+..|+.+...- ...++||||||=.+. ...+..++...+ .+.||.|...
T Consensus 73 ~~~i~f~~Pd~l~~~~--------~~~DlliVDEAAaIp----~p~L~~ll~~~~----~vv~stTi~G 125 (177)
T PF05127_consen 73 KQRIEFVAPDELLAEK--------PQADLLIVDEAAAIP----LPLLKQLLRRFP----RVVFSTTIHG 125 (177)
T ss_dssp CCC--B--HHHHCCT------------SCEEECTGGGS-----HHHHHHHHCCSS----EEEEEEEBSS
T ss_pred cceEEEECCHHHHhCc--------CCCCEEEEechhcCC----HHHHHHHHhhCC----EEEEEeeccc
Confidence 3456666666654321 134789999998764 344555543333 4778888753
No 310
>CHL00181 cbbX CbbX; Provisional
Probab=94.77 E-value=0.17 Score=51.82 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchHHHHH
Q 007481 35 GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~ 52 (602)
|-++++.||+|+|||.++
T Consensus 59 ~~~ill~G~pGtGKT~lA 76 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVA 76 (287)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346899999999999764
No 311
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.71 E-value=0.051 Score=55.82 Aligned_cols=63 Identities=29% Similarity=0.285 Sum_probs=47.4
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCC-CEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHH
Q 007481 14 EALGYSKPTPIQAACIPLALTGR-DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 83 (602)
Q Consensus 14 ~~~g~~~pt~~Q~~~i~~~l~g~-dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~ 83 (602)
.-..|...++-|...+..+..++ |+++++.||||||+. +-++...... .-+++.+=-|.||..
T Consensus 151 dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--LNal~~~i~~-----~eRvItiEDtaELql 214 (355)
T COG4962 151 DLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--LNALSGFIDS-----DERVITIEDTAELQL 214 (355)
T ss_pred HHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--HHHHHhcCCC-----cccEEEEeehhhhcc
Confidence 34467788999999999999876 999999999999974 3343333222 227999999988844
No 312
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.71 E-value=0.69 Score=47.56 Aligned_cols=129 Identities=21% Similarity=0.231 Sum_probs=72.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcC-h-HHHHHHHHHHHHHHhhcCCceEEEE-ECCCCHHHHHH
Q 007481 38 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP-T-RELAVQVHSMIEKIAQFTDIRCCLV-VGGLSTKMQET 114 (602)
Q Consensus 38 vii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~P-t-r~La~Q~~~~~~~l~~~~~i~v~~~-~g~~~~~~~~~ 114 (602)
+++.+..|+|||+. +--+...+... +.+|++.+- | |+-| .+++..|+...++.+..- .|..+..
T Consensus 142 il~vGVNG~GKTTT-IaKLA~~l~~~-----g~~VllaA~DTFRAaA---iEQL~~w~er~gv~vI~~~~G~DpAa---- 208 (340)
T COG0552 142 ILFVGVNGVGKTTT-IAKLAKYLKQQ-----GKSVLLAAGDTFRAAA---IEQLEVWGERLGVPVISGKEGADPAA---- 208 (340)
T ss_pred EEEEecCCCchHhH-HHHHHHHHHHC-----CCeEEEEecchHHHHH---HHHHHHHHHHhCCeEEccCCCCCcHH----
Confidence 55899999999986 23333343332 334555543 3 3333 344566666667766542 2222211
Q ss_pred HHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC-cHHHHHHHHHhCCCCcc-----eee-eeccCCh
Q 007481 115 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-FSAEIHELVRLCPKRRQ-----TML-FSATLTE 187 (602)
Q Consensus 115 ~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g-f~~~i~~i~~~~~~~~q-----~il-~SAT~~~ 187 (602)
...|.+.... -.++++|++|=|-||-+.. .-+++..|.+.+.+... +++ +-||..+
T Consensus 209 --------------VafDAi~~Ak---ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGq 271 (340)
T COG0552 209 --------------VAFDAIQAAK---ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQ 271 (340)
T ss_pred --------------HHHHHHHHHH---HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccCh
Confidence 1233343321 3457789999999987643 45667777776655432 444 4788887
Q ss_pred hHHHHHHHh
Q 007481 188 DVDELIKLS 196 (602)
Q Consensus 188 ~~~~l~~~~ 196 (602)
+-..-++.+
T Consensus 272 nal~QAk~F 280 (340)
T COG0552 272 NALSQAKIF 280 (340)
T ss_pred hHHHHHHHH
Confidence 755554443
No 313
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.69 E-value=0.39 Score=53.98 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=26.1
Q ss_pred CCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeee
Q 007481 142 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~S 182 (602)
.....++||||+|.|....+. .+..+++..|...-+|+.+
T Consensus 116 ~~~~KVvIIDEah~Lt~~A~N-ALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAGFN-ALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHHHHH-HHHHHHhcCCCCeEEEEEe
Confidence 356789999999998765433 3445555555555555555
No 314
>PHA00729 NTP-binding motif containing protein
Probab=94.68 E-value=0.28 Score=48.01 Aligned_cols=74 Identities=12% Similarity=0.232 Sum_probs=36.5
Q ss_pred cEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccC-CcHHH----HHHHHHhCCCCcceeeeeccCChhHHHHHHH
Q 007481 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAE----IHELVRLCPKRRQTMLFSATLTEDVDELIKL 195 (602)
Q Consensus 121 ~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~-gf~~~----i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~ 195 (602)
.+++.+.+.|++.+.... -.....++|||||+-.-+.. .|... ...+...+....+++.+...-+.++...+..
T Consensus 60 ~~~fid~~~Ll~~L~~a~-~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 60 NSYFFELPDALEKIQDAI-DNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred cEEEEEHHHHHHHHHHHH-hcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 455666666666664321 11233568999995532221 12311 1122223333455666666655555555443
No 315
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.67 E-value=0.33 Score=50.11 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=19.1
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLL 61 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~ 61 (602)
++++++.||+|+|||..+ ..+...+.
T Consensus 156 ~~gl~L~G~~G~GKThLa-~Aia~~l~ 181 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLL-AAIANELA 181 (306)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 457999999999999753 44444544
No 316
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.67 E-value=0.19 Score=56.64 Aligned_cols=40 Identities=20% Similarity=0.305 Sum_probs=24.6
Q ss_pred CCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeee
Q 007481 142 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~S 182 (602)
...++++||||+|+|....|.. +...++.-|....+|+.|
T Consensus 122 ~g~~KV~IIDEvh~Ls~~a~Na-LLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNTAFNA-MLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred cCCceEEEEEChhhCCHHHHHH-HHHhcccCCCCeEEEEEE
Confidence 3568899999999987654433 334444444444555544
No 317
>PTZ00293 thymidine kinase; Provisional
Probab=94.64 E-value=0.17 Score=49.06 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=27.0
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 79 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr 79 (602)
|+=.++.||++||||.- +|-.+.+..... .+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTte-LLr~i~~y~~ag-----~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTE-LMRLVKRFTYSE-----KKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHH-HHHHHHHHHHcC-----CceEEEEecc
Confidence 44467899999999965 455565554432 2588888864
No 318
>PF05729 NACHT: NACHT domain
Probab=94.61 E-value=0.17 Score=46.41 Aligned_cols=46 Identities=15% Similarity=0.086 Sum_probs=26.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHH
Q 007481 37 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 83 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~ 83 (602)
-++|.|+.|+|||.. +.-+...+...........+++..+.+....
T Consensus 2 ~l~I~G~~G~GKStl-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (166)
T PF05729_consen 2 VLWISGEPGSGKSTL-LRKLAQQLAEEEPPPSKFPYPFFFSLRDISD 47 (166)
T ss_pred EEEEECCCCCChHHH-HHHHHHHHHhcCcccccceEEEEEeehhhhh
Confidence 367999999999975 3455555554432111123555555555544
No 319
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.54 E-value=0.096 Score=58.68 Aligned_cols=126 Identities=13% Similarity=0.069 Sum_probs=74.5
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHH-HHHHHHhhcC
Q 007481 20 KPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH-SMIEKIAQFT 96 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~g--~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~-~~~~~l~~~~ 96 (602)
..+|||.+....+-.. +.|++..++-+|||.+.+..+...+... +..+|++.||.++|..+. ..|..+...+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~-----P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~s 90 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQD-----PGPMLYVQPTDDAAKDFSKERLDPMIRAS 90 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeC-----CCCEEEEEEcHHHHHHHHHHHHHHHHHhC
Confidence 5689999999988764 6888999999999986443333333222 335999999999998775 4565554443
Q ss_pred CceEEEEEC----CCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccccc
Q 007481 97 DIRCCLVVG----GLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 158 (602)
Q Consensus 97 ~i~v~~~~g----~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~ 158 (602)
..--..+.. ..........+. +..+.++.... ...+.-..+++|++||+|.+..
T Consensus 91 p~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S-------~~~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 91 PVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANS-------PSNLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred HHHHHHhCchhhcccCCchhheecC-CCEEEEEeCCC-------CcccccCCcCEEEEechhhccc
Confidence 221112222 111111122222 33444433111 0122334578999999999864
No 320
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.45 E-value=0.77 Score=46.19 Aligned_cols=34 Identities=18% Similarity=0.093 Sum_probs=24.9
Q ss_pred CCCcHHHHHHHHHHhc----CC-CEEEEcCCCchHHHHH
Q 007481 19 SKPTPIQAACIPLALT----GR-DICGSAITGSGKTAAF 52 (602)
Q Consensus 19 ~~pt~~Q~~~i~~~l~----g~-dvii~a~TGSGKT~a~ 52 (602)
-.+++.+.+++..+.. +. .+++.||+|+|||...
T Consensus 22 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 22 FYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred hCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 3567778888776542 33 5779999999999753
No 321
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.43 E-value=0.23 Score=56.18 Aligned_cols=38 Identities=18% Similarity=0.304 Sum_probs=24.4
Q ss_pred CCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeee
Q 007481 143 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181 (602)
Q Consensus 143 ~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~ 181 (602)
..+.++||||||+|....+. .+..+++.-|....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a~N-ALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFN-ALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHHHH-HHHHHHHcCCCCeEEEEe
Confidence 46789999999998765443 344455554544445554
No 322
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.41 E-value=0.73 Score=53.69 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=24.0
Q ss_pred CCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeee
Q 007481 143 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 181 (602)
Q Consensus 143 ~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~ 181 (602)
..+.++||||||+|.... .+.+..+++.-|....+|+.
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE
Confidence 457899999999986543 33444455554555555554
No 323
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.40 E-value=0.26 Score=54.51 Aligned_cols=24 Identities=21% Similarity=-0.013 Sum_probs=16.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHHH
Q 007481 37 DICGSAITGSGKTAAFALPTLERLL 61 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l~ 61 (602)
-++++||+|+|||.++ ..+...+.
T Consensus 38 a~Lf~GppGtGKTTlA-~~lA~~l~ 61 (504)
T PRK14963 38 AYLFSGPRGVGKTTTA-RLIAMAVN 61 (504)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHh
Confidence 3489999999999874 33444443
No 324
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.33 E-value=0.22 Score=51.58 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=24.6
Q ss_pred CCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeee
Q 007481 142 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~S 182 (602)
...+.++||||||.|... -...+...++.-+....+++.+
T Consensus 107 ~~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 107 EGGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEc
Confidence 366889999999998763 2334444444444444444444
No 325
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.31 E-value=0.48 Score=50.89 Aligned_cols=17 Identities=35% Similarity=0.323 Sum_probs=14.4
Q ss_pred CEEEEcCCCchHHHHHH
Q 007481 37 DICGSAITGSGKTAAFA 53 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~ 53 (602)
.+|++||.|+|||.++.
T Consensus 40 a~lf~Gp~G~GKtt~A~ 56 (397)
T PRK14955 40 GYIFSGLRGVGKTTAAR 56 (397)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48899999999998653
No 326
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=0.84 Score=45.99 Aligned_cols=127 Identities=17% Similarity=0.221 Sum_probs=71.1
Q ss_pred HHHHhcCC-----CEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEE
Q 007481 29 IPLALTGR-----DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV 103 (602)
Q Consensus 29 i~~~l~g~-----dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~ 103 (602)
+|.++.|+ .+++.+|+|+||+.. .-++.. ..+ .+.+-+.+..|+..|.-.-.++.+
T Consensus 155 FPqlFtGkR~PwrgiLLyGPPGTGKSYL--AKAVAT---EAn-----STFFSvSSSDLvSKWmGESEkLVk--------- 215 (439)
T KOG0739|consen 155 FPQLFTGKRKPWRGILLYGPPGTGKSYL--AKAVAT---EAN-----STFFSVSSSDLVSKWMGESEKLVK--------- 215 (439)
T ss_pred chhhhcCCCCcceeEEEeCCCCCcHHHH--HHHHHh---hcC-----CceEEeehHHHHHHHhccHHHHHH---------
Confidence 37778874 588999999999953 333322 111 367888888887665433333211
Q ss_pred ECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC---cHHHHHH----HHHhC----
Q 007481 104 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG---FSAEIHE----LVRLC---- 172 (602)
Q Consensus 104 ~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g---f~~~i~~----i~~~~---- 172 (602)
.|+.+-+.+ ..++|+|||+|.+.... -.+.... ++-..
T Consensus 216 -------------------------nLFemARe~------kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG 264 (439)
T KOG0739|consen 216 -------------------------NLFEMAREN------KPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVG 264 (439)
T ss_pred -------------------------HHHHHHHhc------CCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccc
Confidence 123333332 24589999999765432 1122222 22221
Q ss_pred CCCcceeeeeccCChhHH-HHHHHhcCCCeEEec
Q 007481 173 PKRRQTMLFSATLTEDVD-ELIKLSLTKPLRLSA 205 (602)
Q Consensus 173 ~~~~q~il~SAT~~~~~~-~l~~~~l~~p~~~~~ 205 (602)
...--++.+.||-.+.+. ..+..-+...+++..
T Consensus 265 ~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPL 298 (439)
T KOG0739|consen 265 NDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPL 298 (439)
T ss_pred cCCCceEEEecCCCchhHHHHHHHHhhcceeccC
Confidence 123457788888666544 445566666665543
No 327
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.30 E-value=0.62 Score=50.94 Aligned_cols=17 Identities=29% Similarity=0.180 Sum_probs=13.9
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
.-+++.||||+|||++.
T Consensus 257 ~Vi~LvGpnGvGKTTTi 273 (484)
T PRK06995 257 GVFALMGPTGVGKTTTT 273 (484)
T ss_pred cEEEEECCCCccHHHHH
Confidence 44669999999999864
No 328
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.26 E-value=0.39 Score=53.89 Aligned_cols=19 Identities=26% Similarity=0.216 Sum_probs=15.1
Q ss_pred CCCcceEEEeCccccccCC
Q 007481 142 LDDLAVLILDEADRLLELG 160 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~g 160 (602)
.....++||||+|.|....
T Consensus 117 ~~~~kViIIDE~~~Lt~~a 135 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGA 135 (559)
T ss_pred cCCeEEEEEECcccCCHHH
Confidence 4568899999999886543
No 329
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.19 E-value=0.47 Score=52.69 Aligned_cols=148 Identities=16% Similarity=0.204 Sum_probs=79.9
Q ss_pred cHHHHHHHHHHhcC------CC-EEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 22 TPIQAACIPLALTG------RD-ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 22 t~~Q~~~i~~~l~g------~d-vii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
|--|.+++-.++.. +. +-+.|.-|-||++|..+.+...+...- ..+.|-.|.-+-..-+++.+-+=..
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~Gy-----snIyvtSPspeNlkTlFeFv~kGfD 329 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFGY-----SNIYVTSPSPENLKTLFEFVFKGFD 329 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcCc-----ceEEEcCCChHHHHHHHHHHHcchh
Confidence 77899998666542 33 448999999999998888887765432 3478889998876666555432111
Q ss_pred cCCc----eEEEEECCCCHHHHHHHHcCCCcEEEECcHH-HHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHH
Q 007481 95 FTDI----RCCLVVGGLSTKMQETALRSMPDIVVATPGR-MIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELV 169 (602)
Q Consensus 95 ~~~i----~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~-L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~ 169 (602)
..+. ...++....+ ..... -..|-|.--.+ -++++.-.....+...++||||||--++ ...+..++
T Consensus 330 aL~Yqeh~Dy~iI~s~np-~fkka----ivRInifr~hrQtIQYi~P~D~~kl~q~eLlVIDEAAAIP----Lplvk~Li 400 (1011)
T KOG2036|consen 330 ALEYQEHVDYDIIQSTNP-DFKKA----IVRINIFREHRQTIQYISPHDHQKLGQAELLVIDEAAAIP----LPLVKKLI 400 (1011)
T ss_pred hhcchhhcchhhhhhcCh-hhhhh----EEEEEEeccccceeEeeccchhhhccCCcEEEechhhcCC----HHHHHHhh
Confidence 1111 0001110000 00000 00111111000 0111111112346778899999998764 33333333
Q ss_pred HhCCCCcceeeeeccCChh
Q 007481 170 RLCPKRRQTMLFSATLTED 188 (602)
Q Consensus 170 ~~~~~~~q~il~SAT~~~~ 188 (602)
.+.+++|+.|+...
T Consensus 401 -----gPylVfmaSTinGY 414 (1011)
T KOG2036|consen 401 -----GPYLVFMASTINGY 414 (1011)
T ss_pred -----cceeEEEeeccccc
Confidence 46689999998643
No 330
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=94.17 E-value=0.36 Score=45.22 Aligned_cols=142 Identities=20% Similarity=0.254 Sum_probs=68.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHc
Q 007481 38 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 117 (602)
Q Consensus 38 vii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~ 117 (602)
+.+.--.|=|||.+++=-++..+- .+.+|+|+-=..-- --+.++..+....++.+..+--+.........
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G------~G~rV~ivQFlKg~--~~~GE~~~l~~l~~~~~~~~g~~f~~~~~~~~-- 75 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAG------HGMRVLIVQFLKGG--RYSGELKALKKLPNVEIERFGKGFVWRMNEEE-- 75 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHC------TT--EEEEESS--S--S--HHHHHHGGGT--EEEE--TT----GGGHH--
T ss_pred EEEEeCCCCCchHHHHHHHHHHHh------CCCEEEEEEEecCC--CCcCHHHHHHhCCeEEEEEcCCcccccCCCcH--
Confidence 446667899999987666665552 45578887433330 01233333333334433221111111000000
Q ss_pred CCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcH--HHHHHHHHhCCCCcceeeeeccCChhHHHHHHH
Q 007481 118 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS--AEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 195 (602)
Q Consensus 118 ~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~--~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~ 195 (602)
.+ .......++.... .+.-..+++||+||+-..++.|+. +.+..++...|...-+|+..-.+|+.+.+.+..
T Consensus 76 --~~--~~~~~~~~~~a~~--~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ADl 149 (172)
T PF02572_consen 76 --ED--RAAAREGLEEAKE--AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAADL 149 (172)
T ss_dssp --HH--HHHHHHHHHHHHH--HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-SE
T ss_pred --HH--HHHHHHHHHHHHH--HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCCe
Confidence 00 1111222233222 233456899999999999888864 567778888888888888888999888877643
No 331
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.17 E-value=0.18 Score=58.32 Aligned_cols=72 Identities=25% Similarity=0.242 Sum_probs=57.4
Q ss_pred HHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcC-----Cceee-ccCCCCHHHHHHHHHHHhcCCceEEEEcCcc
Q 007481 232 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAA-----LKAAE-LHGNLTQAQRLEALELFRKQHVDFLIATDVA 303 (602)
Q Consensus 232 ~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g-----~~~~~-lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~ 303 (602)
..+..+.-...+.++++.++|.-.+.+..+.|.... +.+.. +||.|+..++.+++++|.+|+++|||+|+..
T Consensus 114 g~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 114 GLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 344455555667899999999988888877776542 44433 8999999999999999999999999999753
No 332
>PRK04195 replication factor C large subunit; Provisional
Probab=94.15 E-value=0.34 Score=53.48 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCchHHHHH
Q 007481 35 GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~ 52 (602)
.+.+++.||+|+|||..+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 367999999999999753
No 333
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.07 E-value=0.42 Score=53.28 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=26.2
Q ss_pred CCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeee
Q 007481 142 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~S 182 (602)
...+.++||||+|.|....+ +.+...++..|....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 45678999999998876433 33444555555556666655
No 334
>PRK10867 signal recognition particle protein; Provisional
Probab=94.06 E-value=1.1 Score=48.61 Aligned_cols=130 Identities=18% Similarity=0.198 Sum_probs=62.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEE-cCh-HHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHH
Q 007481 38 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL-TPT-RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115 (602)
Q Consensus 38 vii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL-~Pt-r~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~ 115 (602)
+++++++|+|||++.. -+...+... .+.+|+++ +.+ |..+ .+++..|+...++.+.....+.
T Consensus 103 I~~vG~~GsGKTTtaa-kLA~~l~~~----~G~kV~lV~~D~~R~aa---~eQL~~~a~~~gv~v~~~~~~~-------- 166 (433)
T PRK10867 103 IMMVGLQGAGKTTTAG-KLAKYLKKK----KKKKVLLVAADVYRPAA---IEQLKTLGEQIGVPVFPSGDGQ-------- 166 (433)
T ss_pred EEEECCCCCcHHHHHH-HHHHHHHHh----cCCcEEEEEccccchHH---HHHHHHHHhhcCCeEEecCCCC--------
Confidence 5689999999997643 222233322 12235444 333 2222 2334445555565543321111
Q ss_pred HcCCCcEEEECcHHHH-HHHHccCCCCCCCcceEEEeCcccccc-CCcHHHHHHHHHhCCCCcceeeeeccCChhHHHHH
Q 007481 116 LRSMPDIVVATPGRMI-DHLRNSMSVDLDDLAVLILDEADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELI 193 (602)
Q Consensus 116 l~~~~~IvI~Tp~~L~-~~l~~~~~~~l~~l~llVlDEah~l~~-~gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~ 193 (602)
.|..+. +.+.. .....+++||||=+-++.. ......+..+...+.+..-++.++|+...+..+.+
T Consensus 167 ----------dp~~i~~~a~~~---a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a 233 (433)
T PRK10867 167 ----------DPVDIAKAALEE---AKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTA 233 (433)
T ss_pred ----------CHHHHHHHHHHH---HHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHH
Confidence 122222 11111 0122366888888877542 22334455555555444445666776655555544
Q ss_pred HHh
Q 007481 194 KLS 196 (602)
Q Consensus 194 ~~~ 196 (602)
..+
T Consensus 234 ~~F 236 (433)
T PRK10867 234 KAF 236 (433)
T ss_pred HHH
Confidence 433
No 335
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.06 E-value=0.3 Score=50.78 Aligned_cols=43 Identities=14% Similarity=0.075 Sum_probs=28.9
Q ss_pred CCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeeccC
Q 007481 142 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 185 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SAT~ 185 (602)
-...+++|||+||.|... -.+.+..+++.-|....+|+.|..+
T Consensus 105 ~g~~KV~iI~~a~~m~~~-AaNaLLKtLEEPp~~~~fiL~t~~~ 147 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEA-AANALLKTLEEPRPNTYFLLQADLS 147 (325)
T ss_pred cCCceEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEEECCh
Confidence 456889999999998765 3455556666655555555555543
No 336
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=0.058 Score=56.71 Aligned_cols=26 Identities=38% Similarity=0.359 Sum_probs=19.9
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHc
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLY 62 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~ 62 (602)
.-|+|+.+|||||||+. .-.|.+++.
T Consensus 226 KSNvLllGPtGsGKTll--aqTLAr~ld 251 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLL--AQTLARVLD 251 (564)
T ss_pred cccEEEECCCCCchhHH--HHHHHHHhC
Confidence 35899999999999974 456666653
No 337
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.02 E-value=0.24 Score=56.56 Aligned_cols=76 Identities=18% Similarity=0.208 Sum_probs=64.1
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHh----hcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc-ccccCcCCccEEE
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFG----LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-ARGLDIIGVQTVI 316 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~----~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~-~~GlDip~v~~VI 316 (602)
.+.+++|.++|...|...+..+. ..|+++..+||+++..+|..++..+.+|+.+|+|+|..+ ...+++.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 35689999999999987766554 447999999999999999999999999999999999654 4457778888888
Q ss_pred E
Q 007481 317 N 317 (602)
Q Consensus 317 ~ 317 (602)
.
T Consensus 363 I 363 (630)
T TIGR00643 363 I 363 (630)
T ss_pred E
Confidence 5
No 338
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=93.97 E-value=0.69 Score=51.09 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=15.1
Q ss_pred CCEEEEcCCCchHHHHHH
Q 007481 36 RDICGSAITGSGKTAAFA 53 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~ 53 (602)
+.++++||.|+|||.++.
T Consensus 44 ~a~Lf~Gp~G~GKTT~Ar 61 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSAR 61 (507)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 368899999999998653
No 339
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.94 E-value=1.5 Score=44.44 Aligned_cols=128 Identities=21% Similarity=0.272 Sum_probs=64.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEc-C-hHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHH
Q 007481 37 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT-P-TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 114 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~-P-tr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~ 114 (602)
-+++.+|+|+|||.+..-.+ ..+.. .+.+|+++. . .|.-+ .+++..|+...++.+.....+.+
T Consensus 74 vi~l~G~~G~GKTTt~akLA-~~l~~-----~g~~V~li~~D~~r~~a---~~ql~~~~~~~~i~~~~~~~~~d------ 138 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLA-NKLKK-----QGKSVLLAAGDTFRAAA---IEQLEEWAKRLGVDVIKQKEGAD------ 138 (272)
T ss_pred EEEEECCCCCcHHHHHHHHH-HHHHh-----cCCEEEEEeCCCCCHHH---HHHHHHHHHhCCeEEEeCCCCCC------
Confidence 45588999999997643222 22322 133566665 2 23322 23455555555544332111111
Q ss_pred HHcCCCcEEEECcHH-HHHHHHccCCCCCCCcceEEEeCccccccC-CcHHHHHHHHHhCC------CCcceeeeeccCC
Q 007481 115 ALRSMPDIVVATPGR-MIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAEIHELVRLCP------KRRQTMLFSATLT 186 (602)
Q Consensus 115 ~l~~~~~IvI~Tp~~-L~~~l~~~~~~~l~~l~llVlDEah~l~~~-gf~~~i~~i~~~~~------~~~q~il~SAT~~ 186 (602)
|.. ..+.+.. .....+++||||=+.++... ....++..+...++ +.--++.++||..
T Consensus 139 ------------p~~~~~~~l~~---~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~ 203 (272)
T TIGR00064 139 ------------PAAVAFDAIQK---AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG 203 (272)
T ss_pred ------------HHHHHHHHHHH---HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC
Confidence 111 1121211 01234678888888876532 23455666665554 4555677888866
Q ss_pred hhHHHHHH
Q 007481 187 EDVDELIK 194 (602)
Q Consensus 187 ~~~~~l~~ 194 (602)
.+....+.
T Consensus 204 ~~~~~~~~ 211 (272)
T TIGR00064 204 QNALEQAK 211 (272)
T ss_pred HHHHHHHH
Confidence 55444443
No 340
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.94 E-value=1.1 Score=48.42 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=29.2
Q ss_pred cceEEEeCcccccc-CCcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHh
Q 007481 145 LAVLILDEADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLS 196 (602)
Q Consensus 145 l~llVlDEah~l~~-~gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~ 196 (602)
+++||+|=+-++.. ......+..+...+.+.--++.++|+...+....+..+
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f 235 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTF 235 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHH
Confidence 56788888877542 22334455555555444445666776655555444433
No 341
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.92 E-value=0.26 Score=50.42 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCchHHHHH
Q 007481 35 GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~ 52 (602)
+.++++.||+|+|||.++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 347999999999999764
No 342
>PRK05580 primosome assembly protein PriA; Validated
Probab=93.84 E-value=0.22 Score=57.24 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=64.8
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhh-cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcC
Q 007481 243 TSKVIIFSGTKQAAHRLKILFGL-AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA 319 (602)
Q Consensus 243 ~~kvIIF~~s~~~a~~l~~~L~~-~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d 319 (602)
+.++||.++++..+..+...|.. .|..+..+||+++..+|.+....+..|..+|+|+|..+.. +.+.++.+||.-+
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEEC
Confidence 56899999999999999888875 4788999999999999999999999999999999975432 5667888888544
No 343
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.83 E-value=0.29 Score=53.66 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=13.8
Q ss_pred CEEEEcCCCchHHHHH
Q 007481 37 DICGSAITGSGKTAAF 52 (602)
Q Consensus 37 dvii~a~TGSGKT~a~ 52 (602)
.+|++||+|+|||..+
T Consensus 38 ~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 38 AYIFAGPRGTGKTTVA 53 (472)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3689999999999864
No 344
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=93.81 E-value=0.49 Score=49.06 Aligned_cols=140 Identities=11% Similarity=0.047 Sum_probs=69.2
Q ss_pred CCcHHHHHHHHHHhc----C---CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHH
Q 007481 20 KPTPIQAACIPLALT----G---RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 92 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~----g---~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l 92 (602)
.++|+|...+..+.. | +-.++.||.|.||+..+ ..+...++-..... . -|..-..|.++ ..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA-~~~a~~llC~~~~~-~-----~Cg~C~sC~~~----~~- 70 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLV-ELFSRALLCQNYQS-E-----ACGFCHSCELM----QS- 70 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHcCCCCCC-C-----CCCCCHHHHHH----Hc-
Confidence 467888888766653 4 36889999999999654 33444443322110 0 12221222211 11
Q ss_pred hhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhC
Q 007481 93 AQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172 (602)
Q Consensus 93 ~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~ 172 (602)
..++++. .+..... +..|-|-.--.+.+.+.. .......+++|||+||.|... -.+.+..+++.-
T Consensus 71 g~HPD~~--~i~p~~~----------~~~I~vdqiR~l~~~~~~--~~~~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEP 135 (319)
T PRK06090 71 GNHPDLH--VIKPEKE----------GKSITVEQIRQCNRLAQE--SSQLNGYRLFVIEPADAMNES-ASNALLKTLEEP 135 (319)
T ss_pred CCCCCEE--EEecCcC----------CCcCCHHHHHHHHHHHhh--CcccCCceEEEecchhhhCHH-HHHHHHHHhcCC
Confidence 1223332 2222100 001111111112222222 223456889999999998754 345555566665
Q ss_pred CCCcceeeeeccCC
Q 007481 173 PKRRQTMLFSATLT 186 (602)
Q Consensus 173 ~~~~q~il~SAT~~ 186 (602)
|....+|++|..+.
T Consensus 136 p~~t~fiL~t~~~~ 149 (319)
T PRK06090 136 APNCLFLLVTHNQK 149 (319)
T ss_pred CCCeEEEEEECChh
Confidence 55555666665543
No 345
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.79 E-value=0.42 Score=53.90 Aligned_cols=40 Identities=13% Similarity=0.156 Sum_probs=25.7
Q ss_pred CCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeee
Q 007481 142 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~S 182 (602)
...++++||||+|.|.... .+.+..+++.-|....+|+.|
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 4568899999999876543 344555555555555555444
No 346
>PRK10436 hypothetical protein; Provisional
Probab=93.75 E-value=0.2 Score=54.67 Aligned_cols=45 Identities=40% Similarity=0.406 Sum_probs=32.1
Q ss_pred HHHHCCCCCCcHHHHHHHHHHhc--CCCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 12 ACEALGYSKPTPIQAACIPLALT--GRDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 12 ~l~~~g~~~pt~~Q~~~i~~~l~--g~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
.|.++|| .+-|.+.+..++. +.-++++||||||||.. +..++..+
T Consensus 196 ~L~~LG~---~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~ 242 (462)
T PRK10436 196 DLETLGM---TPAQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTL 242 (462)
T ss_pred CHHHcCc---CHHHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhh
Confidence 4567775 4667777776664 34577999999999976 35566665
No 347
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.67 E-value=0.4 Score=51.84 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=14.6
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
.++++.||+|+|||..+
T Consensus 37 ~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 37 SSMILWGPPGTGKTTLA 53 (413)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 37899999999999754
No 348
>PHA02244 ATPase-like protein
Probab=93.66 E-value=0.33 Score=50.99 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=18.1
Q ss_pred HHHhcCCCEEEEcCCCchHHHH
Q 007481 30 PLALTGRDICGSAITGSGKTAA 51 (602)
Q Consensus 30 ~~~l~g~dvii~a~TGSGKT~a 51 (602)
.++-.+.++++.||||+|||..
T Consensus 114 r~l~~~~PVLL~GppGtGKTtL 135 (383)
T PHA02244 114 KIVNANIPVFLKGGAGSGKNHI 135 (383)
T ss_pred HHHhcCCCEEEECCCCCCHHHH
Confidence 3444588999999999999974
No 349
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.66 E-value=0.44 Score=50.45 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=18.1
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 36 RDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
.++++.||+|+|||.+. -.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 57999999999999753 4444444
No 350
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.66 E-value=0.32 Score=53.92 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=64.0
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhh-cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcC
Q 007481 243 TSKVIIFSGTKQAAHRLKILFGL-AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA 319 (602)
Q Consensus 243 ~~kvIIF~~s~~~a~~l~~~L~~-~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d 319 (602)
+.++||.+++...+..+...|.. .+..+..+||+++..+|.++.....+|+.+|+|+|..+-. +.++++.+||.-+
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 56899999999999999888875 4778999999999999999999999999999999975432 4567888888543
No 351
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.59 E-value=0.2 Score=50.69 Aligned_cols=62 Identities=26% Similarity=0.261 Sum_probs=39.2
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHhc-C-CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 11 RACEALGYSKPTPIQAACIPLALT-G-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 11 ~~l~~~g~~~pt~~Q~~~i~~~l~-g-~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
..|.++|| .+.|.+.+..++. . ..+++.++||||||.. +..++..+.. ...+++.|=...|+
T Consensus 57 ~~l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i~~-----~~~~iitiEdp~E~ 120 (264)
T cd01129 57 LDLEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSELNT-----PEKNIITVEDPVEY 120 (264)
T ss_pred CCHHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhhCC-----CCCeEEEECCCcee
Confidence 34677885 4667777776665 3 4578999999999975 4555555432 12246666544443
No 352
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.52 E-value=0.32 Score=54.65 Aligned_cols=18 Identities=28% Similarity=0.152 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchHHHHHH
Q 007481 36 RDICGSAITGSGKTAAFA 53 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~ 53 (602)
..+|+++|.|+|||.++.
T Consensus 39 ha~Lf~GPpG~GKTtiAr 56 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIAR 56 (624)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 357799999999998753
No 353
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.47 E-value=0.8 Score=47.75 Aligned_cols=40 Identities=20% Similarity=0.013 Sum_probs=28.7
Q ss_pred CcHHHHHHHHHHhc--C---CCEEEEcCCCchHHHHHHHHHHHHHH
Q 007481 21 PTPIQAACIPLALT--G---RDICGSAITGSGKTAAFALPTLERLL 61 (602)
Q Consensus 21 pt~~Q~~~i~~~l~--g---~dvii~a~TGSGKT~a~~l~il~~l~ 61 (602)
.+|||+..+..+.. + ...++.||.|.|||..+ ..+...++
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la-~~~a~~ll 46 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFA-RFAAQALL 46 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHH-HHHHHHHc
Confidence 37889988888774 3 35889999999999764 33333433
No 354
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.45 E-value=0.18 Score=48.94 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=25.9
Q ss_pred CCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeecc
Q 007481 142 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 184 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SAT 184 (602)
-...++||+||||.|.+- -...+...++...+..++.+...+
T Consensus 111 ~grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CCceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhhhhcc
Confidence 355679999999998653 344455555555555555444333
No 355
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.44 E-value=0.45 Score=54.87 Aligned_cols=40 Identities=20% Similarity=0.256 Sum_probs=24.0
Q ss_pred cceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeeccCChhH
Q 007481 145 LAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDV 189 (602)
Q Consensus 145 l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SAT~~~~~ 189 (602)
..+|||||+|++.... .+ .++..+. ..+++++++|-.+..
T Consensus 110 ~~IL~IDEIh~Ln~~q-Qd---aLL~~lE-~g~IiLI~aTTenp~ 149 (725)
T PRK13341 110 RTILFIDEVHRFNKAQ-QD---ALLPWVE-NGTITLIGATTENPY 149 (725)
T ss_pred ceEEEEeChhhCCHHH-HH---HHHHHhc-CceEEEEEecCCChH
Confidence 4589999999975432 22 2223232 356788888765443
No 356
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.41 E-value=0.6 Score=44.37 Aligned_cols=40 Identities=18% Similarity=0.294 Sum_probs=24.2
Q ss_pred CCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeee
Q 007481 142 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~S 182 (602)
.....+|||||+|.+.... .+.+...++..+...-+|+++
T Consensus 94 ~~~~kviiide~~~l~~~~-~~~Ll~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAA-ANALLKTLEEPPPNTLFILIT 133 (188)
T ss_pred cCCeEEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEEE
Confidence 4567899999999986542 334445555544444444443
No 357
>PRK05973 replicative DNA helicase; Provisional
Probab=93.41 E-value=0.39 Score=47.56 Aligned_cols=82 Identities=20% Similarity=0.165 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHCCCCC----------CcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEE
Q 007481 3 LNLSRPLLRACEALGYSK----------PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRV 72 (602)
Q Consensus 3 l~L~~~ll~~l~~~g~~~----------pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~v 72 (602)
+.|++.+=+....-||.. +||. .+.+.-+..|.-++|.|++|+|||+.. +-++.....+ +.++
T Consensus 23 ~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~-~~l~GGl~~Gsl~LIaG~PG~GKT~la-lqfa~~~a~~-----Ge~v 95 (237)
T PRK05973 23 IPLHEALDRIAAEEGFSSWSLLAAKAAATTPA-EELFSQLKPGDLVLLGARPGHGKTLLG-LELAVEAMKS-----GRTG 95 (237)
T ss_pred CcHHHHHHHHHHHhccchHHHHHHhccCCCCH-HHhcCCCCCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc-----CCeE
Confidence 344555555555667763 4442 222333334567889999999999754 4443333322 2346
Q ss_pred EEEcChHHHHHHHHHHHHHH
Q 007481 73 LILTPTRELAVQVHSMIEKI 92 (602)
Q Consensus 73 LiL~Ptr~La~Q~~~~~~~l 92 (602)
+|++- -+-..|+.+.+..+
T Consensus 96 lyfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 96 VFFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred EEEEE-eCCHHHHHHHHHHc
Confidence 77743 23345666666654
No 358
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.34 E-value=1 Score=52.22 Aligned_cols=44 Identities=14% Similarity=0.303 Sum_probs=25.6
Q ss_pred ceEEEeCccccccCCc----HHHHHHHHHhCCCCcceeeeeccCChhH
Q 007481 146 AVLILDEADRLLELGF----SAEIHELVRLCPKRRQTMLFSATLTEDV 189 (602)
Q Consensus 146 ~llVlDEah~l~~~gf----~~~i~~i~~~~~~~~q~il~SAT~~~~~ 189 (602)
.+|+|||+|.+...|- ...+..++..+-....+.++.||-+++.
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 3899999999875442 2233334433323445666667655543
No 359
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.31 E-value=0.24 Score=54.57 Aligned_cols=45 Identities=31% Similarity=0.348 Sum_probs=32.5
Q ss_pred HHHHCCCCCCcHHHHHHHHHHhcC-C-CEEEEcCCCchHHHHHHHHHHHHH
Q 007481 12 ACEALGYSKPTPIQAACIPLALTG-R-DICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 12 ~l~~~g~~~pt~~Q~~~i~~~l~g-~-dvii~a~TGSGKT~a~~l~il~~l 60 (602)
.|.++|| .|-|.+.+..++.. + -++++||||||||.. +..++..+
T Consensus 220 ~l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l 266 (486)
T TIGR02533 220 DLETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRL 266 (486)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhcc
Confidence 4567776 57788888877764 3 356999999999975 34556555
No 360
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.30 E-value=0.46 Score=53.73 Aligned_cols=38 Identities=24% Similarity=0.305 Sum_probs=22.1
Q ss_pred CCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceee
Q 007481 142 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 180 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il 180 (602)
+....+|||||+|.|....+ +.+..+++..+....+|+
T Consensus 118 ~~~~kVvIIDEa~~L~~~a~-naLLk~LEepp~~tv~Il 155 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAAF-NALLKTLEEPPPHAIFIL 155 (585)
T ss_pred cCCeEEEEEeChHhCCHHHH-HHHHHHHhcCCCCeEEEE
Confidence 45678999999998865432 333444444443333333
No 361
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.30 E-value=0.031 Score=50.33 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=13.4
Q ss_pred CEEEEcCCCchHHHH
Q 007481 37 DICGSAITGSGKTAA 51 (602)
Q Consensus 37 dvii~a~TGSGKT~a 51 (602)
++++.+|+|+|||..
T Consensus 1 ~vlL~G~~G~GKt~l 15 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTL 15 (139)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred CEEEECCCCCCHHHH
Confidence 589999999999974
No 362
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=93.27 E-value=0.68 Score=47.16 Aligned_cols=114 Identities=18% Similarity=0.141 Sum_probs=55.8
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHHHcCC---CCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHH
Q 007481 36 RDICGSAITGSGKTAAFALPTLERLLYRP---KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 112 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l~~~~---~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~ 112 (602)
.++++.|+||-|||.+ +--+....... ....-+-++|-+|...-..-.|..+-.. .+..+. ...+....
T Consensus 62 p~lLivG~snnGKT~I--i~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~---lgaP~~---~~~~~~~~ 133 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI--IERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEA---LGAPYR---PRDRVAKL 133 (302)
T ss_pred CceEEecCCCCcHHHH--HHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHH---hCcccC---CCCCHHHH
Confidence 5899999999999974 22232222111 1111233566677665555455544332 121110 01111100
Q ss_pred HHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcH--HHHHHHHHhCCCCcc
Q 007481 113 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS--AEIHELVRLCPKRRQ 177 (602)
Q Consensus 113 ~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~--~~i~~i~~~~~~~~q 177 (602)
. ...+..++.- .+.+|||||+|+++.-... ..+...++.+.+..+
T Consensus 134 ~--------------~~~~~llr~~------~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ 180 (302)
T PF05621_consen 134 E--------------QQVLRLLRRL------GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQ 180 (302)
T ss_pred H--------------HHHHHHHHHc------CCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccC
Confidence 0 0112333332 3679999999998876543 233344455544333
No 363
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.27 E-value=0.16 Score=54.85 Aligned_cols=41 Identities=32% Similarity=0.313 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHhcCCC--EEEEcCCCchHHHHHHHHHHHHHHcC
Q 007481 22 TPIQAACIPLALTGRD--ICGSAITGSGKTAAFALPTLERLLYR 63 (602)
Q Consensus 22 t~~Q~~~i~~~l~g~d--vii~a~TGSGKT~a~~l~il~~l~~~ 63 (602)
.+.|...+..++.... +++.||||||||.. +..++..+...
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCC
Confidence 6888888888887644 44899999999987 57777776544
No 364
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=93.26 E-value=0.34 Score=50.71 Aligned_cols=41 Identities=17% Similarity=0.022 Sum_probs=28.4
Q ss_pred CcHHHHHHHHHHhc--C---CCEEEEcCCCchHHHHHHHHHHHHHHc
Q 007481 21 PTPIQAACIPLALT--G---RDICGSAITGSGKTAAFALPTLERLLY 62 (602)
Q Consensus 21 pt~~Q~~~i~~~l~--g---~dvii~a~TGSGKT~a~~l~il~~l~~ 62 (602)
++|||...+..+.. + +-+++.||.|.|||..+ ..+...++-
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA-~~~A~~LlC 47 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFA-QHLAQGLLC 47 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHH-HHHHHHHcC
Confidence 36888888877664 3 46779999999999764 334444443
No 365
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.18 E-value=0.34 Score=55.28 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=37.1
Q ss_pred ceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeeccCC
Q 007481 146 AVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 186 (602)
Q Consensus 146 ~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SAT~~ 186 (602)
=++|+|+.|.+.+......+..++++.|.+.+.++.|-+-|
T Consensus 131 l~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 131 LYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred eEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 38999999999999888899999999999999999998754
No 366
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.16 E-value=0.99 Score=48.34 Aligned_cols=42 Identities=21% Similarity=0.357 Sum_probs=26.1
Q ss_pred CCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeecc
Q 007481 142 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 184 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SAT 184 (602)
.....++||||+|.|.... .+.+..+++.-+....+|+.|.+
T Consensus 115 ~~~~kViiIDead~m~~~a-anaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA-ANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred cCCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCCeEEEEECC
Confidence 3567899999999986553 34455555554444444444444
No 367
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.15 E-value=0.43 Score=47.32 Aligned_cols=52 Identities=17% Similarity=0.071 Sum_probs=33.6
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHh
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 93 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~ 93 (602)
|..+++.||+|+|||...+--+.+.+ .+ +-+++|++ +.+-..|+.+.+..+.
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~-~~-----ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGL-QM-----GEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH-Hc-----CCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 46788999999999975433334443 22 23477777 4456667777666653
No 368
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.12 E-value=2.1 Score=39.95 Aligned_cols=15 Identities=33% Similarity=0.383 Sum_probs=12.7
Q ss_pred EEEEcCCCchHHHHH
Q 007481 38 ICGSAITGSGKTAAF 52 (602)
Q Consensus 38 vii~a~TGSGKT~a~ 52 (602)
+++.+++|+|||...
T Consensus 3 ~~~~G~~G~GKTt~~ 17 (173)
T cd03115 3 ILLVGLQGVGKTTTA 17 (173)
T ss_pred EEEECCCCCCHHHHH
Confidence 568999999999763
No 369
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=93.10 E-value=0.79 Score=50.83 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=27.7
Q ss_pred CCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeee
Q 007481 142 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~S 182 (602)
...+.++||||||.|.... ...+..+++..|....+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 4668899999999987543 334555566656666666665
No 370
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.03 E-value=0.47 Score=56.24 Aligned_cols=76 Identities=16% Similarity=0.126 Sum_probs=64.3
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC-ccccccCcCCccEEE
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-VAARGLDIIGVQTVI 316 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~----~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~-~~~~GlDip~v~~VI 316 (602)
.+.+++|.++|...|......|.. .++++..++|..+..++..++..+..|+++|+|+|. ++...+.+.++.+||
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 357899999999999988776654 467888999999999999999999999999999996 444567788898888
Q ss_pred E
Q 007481 317 N 317 (602)
Q Consensus 317 ~ 317 (602)
.
T Consensus 579 I 579 (926)
T TIGR00580 579 I 579 (926)
T ss_pred e
Confidence 5
No 371
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.03 E-value=0.53 Score=52.75 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=23.4
Q ss_pred CCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeee
Q 007481 143 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182 (602)
Q Consensus 143 ~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~S 182 (602)
....++||||||.|.... ...+..+++..|...-+|++|
T Consensus 118 ~~~KVIIIDEad~Lt~~A-~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTSA-WNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred CCcEEEEEechHhCCHHH-HHHHHHHHHhCCCcEEEEEEC
Confidence 457799999999875432 334445555544444444444
No 372
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.01 E-value=1.2 Score=51.84 Aligned_cols=17 Identities=29% Similarity=0.161 Sum_probs=15.2
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
.|+|+.||+|+|||..+
T Consensus 204 ~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CceEEECCCCCCHHHHH
Confidence 58999999999999764
No 373
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.00 E-value=0.84 Score=51.70 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=24.1
Q ss_pred CCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeee
Q 007481 142 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~S 182 (602)
+....++||||+|.|.... .+.+..+++.-+...-+|+++
T Consensus 125 ~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 4567899999999986543 233444444444444444444
No 374
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.99 E-value=0.94 Score=44.75 Aligned_cols=51 Identities=12% Similarity=0.012 Sum_probs=30.5
Q ss_pred cCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHH
Q 007481 34 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 91 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~ 91 (602)
.|.-+++.+++|+|||+.. +-++..+... +.++++++.. +-..+..+.+..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~-~~~~~~~~~~-----g~~~~yi~~e-~~~~~~~~~~~~ 73 (230)
T PRK08533 23 AGSLILIEGDESTGKSILS-QRLAYGFLQN-----GYSVSYVSTQ-LTTTEFIKQMMS 73 (230)
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHHHhC-----CCcEEEEeCC-CCHHHHHHHHHH
Confidence 3667889999999999753 3344444332 2357888743 333444444443
No 375
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=92.95 E-value=1.6 Score=45.08 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=25.4
Q ss_pred CcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeec
Q 007481 144 DLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSA 183 (602)
Q Consensus 144 ~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SA 183 (602)
...+|||||+|.+... ....+..++...+....+|+.+.
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~~ 140 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSCN 140 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEeC
Confidence 4679999999988653 23455556666566666666543
No 376
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=92.95 E-value=0.29 Score=55.07 Aligned_cols=45 Identities=31% Similarity=0.357 Sum_probs=32.5
Q ss_pred HHHHCCCCCCcHHHHHHHHHHhcC--CCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 12 ACEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 12 ~l~~~g~~~pt~~Q~~~i~~~l~g--~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
.|.++||. |-|.+.+..++.. ..++++||||||||.. +..++..+
T Consensus 294 ~l~~lg~~---~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~ 340 (564)
T TIGR02538 294 DIDKLGFE---PDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNIL 340 (564)
T ss_pred CHHHcCCC---HHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhh
Confidence 46778864 6677777766653 4567999999999976 45666655
No 377
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=92.92 E-value=0.53 Score=49.25 Aligned_cols=140 Identities=14% Similarity=0.080 Sum_probs=68.8
Q ss_pred CCcHHHHHHHHHHhc----C---CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHH
Q 007481 20 KPTPIQAACIPLALT----G---RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 92 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~----g---~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l 92 (602)
.++|||...+..+.. | +-.++.||.|+||+..+ ..+...++-.......+. =.|+.-.+ +..
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA-~~~A~~LlC~~~~~~~~C--g~C~sC~~-------~~~- 70 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALI-YALSRWLMCQQPQGHKSC--GHCRGCQL-------MQA- 70 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHH-HHHHHHHcCCCCCCCCCC--CCCHHHHH-------HHc-
Confidence 357888888877653 3 36779999999999764 343444433211111000 01222111 111
Q ss_pred hhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhC
Q 007481 93 AQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172 (602)
Q Consensus 93 ~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~ 172 (602)
..++++. .+..... ...|-|-.--.+.+.+.. .......+++|||+||.|... -.+.+..+++.-
T Consensus 71 g~HPD~~--~i~p~~~----------~~~I~idqiR~l~~~~~~--~~~~g~~kV~iI~~ae~m~~~-AaNaLLKtLEEP 135 (334)
T PRK07993 71 GTHPDYY--TLTPEKG----------KSSLGVDAVREVTEKLYE--HARLGGAKVVWLPDAALLTDA-AANALLKTLEEP 135 (334)
T ss_pred CCCCCEE--EEecccc----------cccCCHHHHHHHHHHHhh--ccccCCceEEEEcchHhhCHH-HHHHHHHHhcCC
Confidence 1223332 2222110 001111111122232322 123466889999999998765 345555555655
Q ss_pred CCCcceeeeeccC
Q 007481 173 PKRRQTMLFSATL 185 (602)
Q Consensus 173 ~~~~q~il~SAT~ 185 (602)
|...-+|++|.-+
T Consensus 136 p~~t~fiL~t~~~ 148 (334)
T PRK07993 136 PENTWFFLACREP 148 (334)
T ss_pred CCCeEEEEEECCh
Confidence 5555566666554
No 378
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=92.91 E-value=0.54 Score=52.70 Aligned_cols=135 Identities=19% Similarity=0.144 Sum_probs=81.0
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcC--CceEEEEECCCCHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT--DIRCCLVVGGLSTKMQ 112 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~--~i~v~~~~g~~~~~~~ 112 (602)
.+-.++..|-=.|||.+.. +++..++.. ..+.++++.+|....+..+++.+..+.... +..+..+.| ...
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s---~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I--- 325 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALAT---FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI--- 325 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHh---CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE---
Confidence 3678899999999998643 666555533 235689999999999999998888765421 111222222 110
Q ss_pred HHHHcCC--CcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeeccCCh
Q 007481 113 ETALRSM--PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 187 (602)
Q Consensus 113 ~~~l~~~--~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SAT~~~ 187 (602)
...+..+ +.|.+++. ++..+..=..++++|||||+.+.+.-+...+ -++ ...++++|++|.|-+.
T Consensus 326 ~i~f~nG~kstI~FaSa-------rntNsiRGqtfDLLIVDEAqFIk~~al~~il-p~l--~~~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 326 SFSFPDGSRSTIVFASS-------HNTNGIRGQDFNLLFVDEANFIRPDAVQTIM-GFL--NQTNCKIIFVSSTNTG 392 (738)
T ss_pred EEEecCCCccEEEEEec-------cCCCCccCCcccEEEEechhhCCHHHHHHHH-HHH--hccCccEEEEecCCCC
Confidence 0011112 24555531 2222233346889999999988765333333 222 2237889999988654
No 379
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.89 E-value=0.22 Score=48.96 Aligned_cols=131 Identities=15% Similarity=0.124 Sum_probs=63.9
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcC-------CceEEEEECCC
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT-------DIRCCLVVGGL 107 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~-------~i~v~~~~g~~ 107 (602)
|..+++.|++|+|||...+--+.+.+... +-++++++- .+-..++.+.+..+.... .+.+.-+....
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~-----ge~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNF-----GEKVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH-----T--EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhc-----CCcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccc
Confidence 46788999999999965433333444330 224777774 334455666666542110 11111111000
Q ss_pred CHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccC----CcHHHHHHHHHhCCCCcceeeeec
Q 007481 108 STKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL----GFSAEIHELVRLCPKRRQTMLFSA 183 (602)
Q Consensus 108 ~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~----gf~~~i~~i~~~~~~~~q~il~SA 183 (602)
. .+ . -..++.++..+.+. +.-...+.+|||-...+... .++..+..+...+.....+.++++
T Consensus 93 ~---~~-------~--~~~~~~l~~~i~~~--i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~ 158 (226)
T PF06745_consen 93 I---GW-------S--PNDLEELLSKIREA--IEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTS 158 (226)
T ss_dssp S---T--------T--SCCHHHHHHHHHHH--HHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred c---cc-------c--ccCHHHHHHHHHHH--HHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 0 00 0 11233344433321 00011268999999877221 245566666666665566677777
Q ss_pred cC
Q 007481 184 TL 185 (602)
Q Consensus 184 T~ 185 (602)
..
T Consensus 159 ~~ 160 (226)
T PF06745_consen 159 EM 160 (226)
T ss_dssp EE
T ss_pred cc
Confidence 63
No 380
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=92.88 E-value=0.35 Score=49.94 Aligned_cols=49 Identities=20% Similarity=0.202 Sum_probs=29.0
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHH
Q 007481 36 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 90 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~ 90 (602)
.++|+++|+|+|||..+-+.+. .......+.+=+.-|.+-+..+...|+
T Consensus 163 pSmIlWGppG~GKTtlArlia~------tsk~~SyrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIAS------TSKKHSYRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred CceEEecCCCCchHHHHHHHHh------hcCCCceEEEEEeccccchHHHHHHHH
Confidence 4799999999999974322221 111223456666666655555555444
No 381
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=92.86 E-value=0.83 Score=43.38 Aligned_cols=92 Identities=20% Similarity=0.196 Sum_probs=55.2
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHH
Q 007481 36 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~ 115 (602)
+=.++.+|++||||.. +|-.+.++... +.++++..|-..- .+ +.....-.-|.
T Consensus 5 ~l~~i~gpM~SGKT~e-Ll~r~~~~~~~-----g~~v~vfkp~iD~------------R~-~~~~V~Sr~G~-------- 57 (201)
T COG1435 5 WLEFIYGPMFSGKTEE-LLRRARRYKEA-----GMKVLVFKPAIDT------------RY-GVGKVSSRIGL-------- 57 (201)
T ss_pred EEEEEEccCcCcchHH-HHHHHHHHHHc-----CCeEEEEeccccc------------cc-ccceeeeccCC--------
Confidence 3457899999999986 45555555443 3368888885321 11 11111111121
Q ss_pred HcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccccc
Q 007481 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 158 (602)
Q Consensus 116 l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~ 158 (602)
..+-++|-.+..+.+++.... . ...+++|.||||+.+..
T Consensus 58 --~~~A~~i~~~~~i~~~i~~~~-~-~~~~~~v~IDEaQF~~~ 96 (201)
T COG1435 58 --SSEAVVIPSDTDIFDEIAALH-E-KPPVDCVLIDEAQFFDE 96 (201)
T ss_pred --cccceecCChHHHHHHHHhcc-c-CCCcCEEEEehhHhCCH
Confidence 224567778888888887531 1 12278999999997543
No 382
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=92.82 E-value=0.44 Score=50.87 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=30.9
Q ss_pred CHHHHHHHHHCCCCCCcHHHH--------HHHHHHhcCCCEEEEcCCCchHHHHHH
Q 007481 6 SRPLLRACEALGYSKPTPIQA--------ACIPLALTGRDICGSAITGSGKTAAFA 53 (602)
Q Consensus 6 ~~~ll~~l~~~g~~~pt~~Q~--------~~i~~~l~g~dvii~a~TGSGKT~a~~ 53 (602)
.+|+==-|.++||. |..+-. +++|.+-.+.|+|..||+|+|||..|.
T Consensus 173 dEWid~LlrSiG~~-P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 173 EEWIDVLIRSIGYE-PEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHHHHHHHhcCCC-cccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHH
Confidence 34444445677776 322211 223666678999999999999997654
No 383
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=92.78 E-value=0.6 Score=43.96 Aligned_cols=54 Identities=22% Similarity=0.375 Sum_probs=42.6
Q ss_pred CCcceEEEeCccccccCCc--HHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHh
Q 007481 143 DDLAVLILDEADRLLELGF--SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLS 196 (602)
Q Consensus 143 ~~l~llVlDEah~l~~~gf--~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~ 196 (602)
..+++||+||.-..+.+|+ .+++..++...|....+|+..-..|+.+.+.+.+.
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlV 176 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLV 176 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 3588999999999888885 46677777777777777777778898888887654
No 384
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=92.70 E-value=0.13 Score=50.54 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=14.3
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 007481 38 ICGSAITGSGKTAAFALPTL 57 (602)
Q Consensus 38 vii~a~TGSGKT~a~~l~il 57 (602)
++|.|+.|||||.. +..++
T Consensus 1 ~vv~G~pGsGKSt~-i~~~~ 19 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL-IKKLL 19 (234)
T ss_pred CEEEcCCCCCHHHH-HHHHH
Confidence 47899999999974 34444
No 385
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=92.60 E-value=0.075 Score=64.79 Aligned_cols=93 Identities=27% Similarity=0.339 Sum_probs=74.4
Q ss_pred eEEEEeCcHHHHHHHHHHHhhcC-CceeeccCCCCH-----------HHHHHHHHHHhcCCceEEEEcCccccccCcCCc
Q 007481 245 KVIIFSGTKQAAHRLKILFGLAA-LKAAELHGNLTQ-----------AQRLEALELFRKQHVDFLIATDVAARGLDIIGV 312 (602)
Q Consensus 245 kvIIF~~s~~~a~~l~~~L~~~g-~~~~~lhg~~~~-----------~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v 312 (602)
-.|+|+.....+..+...+.... ..+..+.|.+.+ ..+.+++..|....+++|++|.++.+|+|++.|
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 45899999888888877776553 233334443221 235788999999999999999999999999999
Q ss_pred cEEEEcCCCCChhhHHHHhhhcccC
Q 007481 313 QTVINYACPRDLTSYVHRVGRTARA 337 (602)
Q Consensus 313 ~~VI~~d~p~s~~~yiQriGRa~R~ 337 (602)
+.|+.++.|.....|+|..||+-++
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccc
Confidence 9999999999999999999996553
No 386
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=92.47 E-value=0.43 Score=49.38 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=19.3
Q ss_pred HHHHHhcCCCEEEEcCCCchHHHH
Q 007481 28 CIPLALTGRDICGSAITGSGKTAA 51 (602)
Q Consensus 28 ~i~~~l~g~dvii~a~TGSGKT~a 51 (602)
++-.+..++++++.+++|+|||..
T Consensus 57 vl~~l~~~~~ilL~G~pGtGKTtl 80 (327)
T TIGR01650 57 ICAGFAYDRRVMVQGYHGTGKSTH 80 (327)
T ss_pred HHHHHhcCCcEEEEeCCCChHHHH
Confidence 344455689999999999999975
No 387
>PRK14873 primosome assembly protein PriA; Provisional
Probab=92.42 E-value=0.74 Score=52.62 Aligned_cols=90 Identities=12% Similarity=0.095 Sum_probs=70.1
Q ss_pred hHHHHHHHHhhh--cCCCeEEEEeCcHHHHHHHHHHHhhc-C-CceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccc
Q 007481 229 NQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLA-A-LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 304 (602)
Q Consensus 229 ~k~~~l~~l~~~--~~~~kvIIF~~s~~~a~~l~~~L~~~-g-~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~ 304 (602)
.+.+++..++.. ..+..+||.++.+..+..+...|... | ..+..+|++++..+|.+......+|+.+|+|+|..+.
T Consensus 172 GKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv 251 (665)
T PRK14873 172 DWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV 251 (665)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE
Confidence 455555555442 23668999999999999998888754 4 6789999999999999999999999999999997654
Q ss_pred cccCcCCccEEEEcC
Q 007481 305 RGLDIIGVQTVINYA 319 (602)
Q Consensus 305 ~GlDip~v~~VI~~d 319 (602)
. +-+++..+||..+
T Consensus 252 F-aP~~~LgLIIvdE 265 (665)
T PRK14873 252 F-APVEDLGLVAIWD 265 (665)
T ss_pred E-eccCCCCEEEEEc
Confidence 3 4556777777543
No 388
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.41 E-value=0.51 Score=48.08 Aligned_cols=124 Identities=19% Similarity=0.267 Sum_probs=71.3
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHH-----------HHHHHHHHHHHHhhcCCceEEEE
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE-----------LAVQVHSMIEKIAQFTDIRCCLV 103 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~-----------La~Q~~~~~~~l~~~~~i~v~~~ 103 (602)
++-++++||+|+|||.. .-.+.+++--+.......-.||=..... |+.++++.+..+....+.-|+++
T Consensus 177 NRliLlhGPPGTGKTSL-CKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSL-CKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred eeEEEEeCCCCCChhHH-HHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45678999999999963 3445555544433222223455444444 45566666677766667667777
Q ss_pred ECCCC------------------------HHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccC
Q 007481 104 VGGLS------------------------TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 159 (602)
Q Consensus 104 ~g~~~------------------------~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~ 159 (602)
..... .-.|...+...++|+|-|...|.+ .++.-.+|-||-...-
T Consensus 256 IDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~-----------siD~AfVDRADi~~yV 324 (423)
T KOG0744|consen 256 IDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTD-----------SIDVAFVDRADIVFYV 324 (423)
T ss_pred eHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHH-----------HHHHHhhhHhhheeec
Confidence 65321 113455567777877666444444 3445678888865544
Q ss_pred C--cHHHHHHHHH
Q 007481 160 G--FSAEIHELVR 170 (602)
Q Consensus 160 g--f~~~i~~i~~ 170 (602)
| -...+.+|+.
T Consensus 325 G~Pt~~ai~~Ilk 337 (423)
T KOG0744|consen 325 GPPTAEAIYEILK 337 (423)
T ss_pred CCccHHHHHHHHH
Confidence 4 2334444443
No 389
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=92.38 E-value=0.56 Score=52.41 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=66.3
Q ss_pred hcCCCeEEEEeCcHHHHH----HHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc-ccccCcCCccE
Q 007481 240 KTFTSKVIIFSGTKQAAH----RLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-ARGLDIIGVQT 314 (602)
Q Consensus 240 ~~~~~kvIIF~~s~~~a~----~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~-~~GlDip~v~~ 314 (602)
...+..+.+..+|.-.|+ .+..+|...|+.+..|.|.+...+|.++++...+|+++++|+|-++ -..+++.+.-+
T Consensus 308 i~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgL 387 (677)
T COG1200 308 IEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGL 387 (677)
T ss_pred HHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeE
Confidence 344678999999965555 5567777789999999999999999999999999999999999765 66788888888
Q ss_pred EEE
Q 007481 315 VIN 317 (602)
Q Consensus 315 VI~ 317 (602)
||.
T Consensus 388 VIi 390 (677)
T COG1200 388 VII 390 (677)
T ss_pred EEE
Confidence 885
No 390
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=92.37 E-value=0.71 Score=49.22 Aligned_cols=47 Identities=17% Similarity=0.226 Sum_probs=30.2
Q ss_pred CcceEEEeCccccccC-CcHHHHHHHHHhCCC-CcceeeeeccCChhHH
Q 007481 144 DLAVLILDEADRLLEL-GFSAEIHELVRLCPK-RRQTMLFSATLTEDVD 190 (602)
Q Consensus 144 ~l~llVlDEah~l~~~-gf~~~i~~i~~~~~~-~~q~il~SAT~~~~~~ 190 (602)
++++++||.++.+... .....+-.++..+.. ..|+++.|-.+|.++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 5779999999988765 344444444444433 3477777777776544
No 391
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.35 E-value=1.1 Score=53.59 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=34.3
Q ss_pred ceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeeccCC
Q 007481 146 AVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 186 (602)
Q Consensus 146 ~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SAT~~ 186 (602)
-+||||++|.+.+......+..++...|....+|+.|-+.+
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 38999999998766667788888999999999988887754
No 392
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.33 E-value=2.6 Score=43.74 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=30.0
Q ss_pred CCcceEEEeCccccccC-CcHHHHHHHHHhC------CCCcceeeeeccCChhHHHHH
Q 007481 143 DDLAVLILDEADRLLEL-GFSAEIHELVRLC------PKRRQTMLFSATLTEDVDELI 193 (602)
Q Consensus 143 ~~l~llVlDEah~l~~~-gf~~~i~~i~~~~------~~~~q~il~SAT~~~~~~~l~ 193 (602)
.++++||||=+.++... ....++..+...+ .+..-++.++||...+....+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a 252 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA 252 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH
Confidence 34678999999886533 2334555555432 233346788888765433333
No 393
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.30 E-value=0.65 Score=52.73 Aligned_cols=17 Identities=24% Similarity=0.216 Sum_probs=14.5
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
..+|+.||.|+|||.++
T Consensus 39 ~a~Lf~Gp~G~GKttlA 55 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSA 55 (620)
T ss_pred ceEEEECCCCCChHHHH
Confidence 45789999999999864
No 394
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.29 E-value=0.38 Score=45.77 Aligned_cols=37 Identities=43% Similarity=0.410 Sum_probs=28.5
Q ss_pred HHHCCCCCCcHHHHHHHHHHhc-CCCEEEEcCCCchHHHH
Q 007481 13 CEALGYSKPTPIQAACIPLALT-GRDICGSAITGSGKTAA 51 (602)
Q Consensus 13 l~~~g~~~pt~~Q~~~i~~~l~-g~dvii~a~TGSGKT~a 51 (602)
|...|+ .++-|...+...+. |..+++.+|||||||..
T Consensus 4 l~~~g~--~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 4 LIAQGT--FSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred HHHcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 344454 46778888877765 78889999999999974
No 395
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.28 E-value=0.92 Score=44.55 Aligned_cols=50 Identities=18% Similarity=0.113 Sum_probs=28.0
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 91 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~ 91 (602)
|..+++.+++|+|||..+..-+.+.+ .. +..+++++. .+...++.+....
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~-~~-----g~~~~~is~-e~~~~~i~~~~~~ 69 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGL-RD-----GDPVIYVTT-EESRESIIRQAAQ 69 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHH-hc-----CCeEEEEEc-cCCHHHHHHHHHH
Confidence 56788999999999975432233333 22 224666664 2333444444333
No 396
>PRK06904 replicative DNA helicase; Validated
Probab=92.18 E-value=0.98 Score=49.64 Aligned_cols=116 Identities=18% Similarity=0.241 Sum_probs=59.1
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEE-EC-CCCHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV-VG-GLSTKMQ 112 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~-~g-~~~~~~~ 112 (602)
|.=+|+.|.||.|||. |.+-+...+... .+..|+|++.- .-..|+...+-.. ..++....+ .| ..+.. .
T Consensus 221 G~LiiIaarPg~GKTa-falnia~~~a~~----~g~~Vl~fSlE-Ms~~ql~~Rlla~--~s~v~~~~i~~g~~l~~~-e 291 (472)
T PRK06904 221 SDLIIVAARPSMGKTT-FAMNLCENAAMA----SEKPVLVFSLE-MPAEQIMMRMLAS--LSRVDQTKIRTGQNLDQQ-D 291 (472)
T ss_pred CcEEEEEeCCCCChHH-HHHHHHHHHHHh----cCCeEEEEecc-CCHHHHHHHHHHh--hCCCCHHHhccCCCCCHH-H
Confidence 4556789999999996 445555444322 12246666443 4455665554432 223333222 23 23322 2
Q ss_pred HH-------HHcCCCcEEEE-----CcHHHHHHHHccCCCCCCCcceEEEeCccccccCC
Q 007481 113 ET-------ALRSMPDIVVA-----TPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 160 (602)
Q Consensus 113 ~~-------~l~~~~~IvI~-----Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g 160 (602)
|. .+...+++.|. |+..+...++... .....+++||||=.+.|...+
T Consensus 292 ~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~-~~~~~~~lvvIDYLqli~~~~ 350 (472)
T PRK06904 292 WAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVY-RENGGLSLIMVDYLQLMRAPG 350 (472)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHH-HhCCCCCEEEEecHHhcCCCC
Confidence 22 23234556663 4445544443211 011247899999988776433
No 397
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.18 E-value=0.18 Score=55.97 Aligned_cols=47 Identities=21% Similarity=0.238 Sum_probs=35.8
Q ss_pred HCCCC-CCcHHHHHHHHHHh----cCCCEEEEcCCCchHHHHHHHHHHHHHH
Q 007481 15 ALGYS-KPTPIQAACIPLAL----TGRDICGSAITGSGKTAAFALPTLERLL 61 (602)
Q Consensus 15 ~~g~~-~pt~~Q~~~i~~~l----~g~dvii~a~TGSGKT~a~~l~il~~l~ 61 (602)
.++|+ +|+.||.+....+. .|+=.|+..|||+|||+..+..++.+|.
T Consensus 9 ~F~fPy~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 9 EFPFPYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred ccCCCCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 34443 59999998877665 4898899999999999887666665543
No 398
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=92.03 E-value=0.36 Score=48.37 Aligned_cols=17 Identities=24% Similarity=0.128 Sum_probs=14.6
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
.++++.+|+|.|||..+
T Consensus 53 DHvLl~GPPGlGKTTLA 69 (332)
T COG2255 53 DHVLLFGPPGLGKTTLA 69 (332)
T ss_pred CeEEeeCCCCCcHHHHH
Confidence 47999999999999754
No 399
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.01 E-value=1.7 Score=47.95 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=20.3
Q ss_pred CCCcceEEEeCccccccCCcHHHHHHHHHhCCCCc
Q 007481 142 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 176 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~ 176 (602)
.....++||||||.|....+ +.+...+...|...
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~-naLLk~LEepp~~~ 150 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAF-NALLKTLEEPPPRT 150 (486)
T ss_pred cCCeeEEEEEChhhcCHHHH-HHHHHHHhcCCCCe
Confidence 45678999999998765433 23333444433333
No 400
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=92.00 E-value=1.1 Score=48.96 Aligned_cols=148 Identities=16% Similarity=0.088 Sum_probs=85.0
Q ss_pred CCcHHHHHHHHHHhc------C----CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHH
Q 007481 20 KPTPIQAACIPLALT------G----RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 89 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~------g----~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~ 89 (602)
.+-|||.-++-.++. | +..+|..|-+-|||..+...++..++... ..+..+.|++|+.+-+.+.++.+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~--~~~~~~~i~A~s~~qa~~~F~~a 138 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW--RSGAGIYILAPSVEQAANSFNPA 138 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh--hcCCcEEEEeccHHHHHHhhHHH
Confidence 468999999999883 2 35789999999999654322333222222 24567999999999998888888
Q ss_pred HHHhhcCCceEEEEECCCCHHHHHHHHcCCCc---EEEECcHHHHHHHHc-cCCCCCCCcceEEEeCccccccCCcHHHH
Q 007481 90 EKIAQFTDIRCCLVVGGLSTKMQETALRSMPD---IVVATPGRMIDHLRN-SMSVDLDDLAVLILDEADRLLELGFSAEI 165 (602)
Q Consensus 90 ~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~---IvI~Tp~~L~~~l~~-~~~~~l~~l~llVlDEah~l~~~gf~~~i 165 (602)
+....... +.. .......+ |.+.--...+..+.+ ....+-.+..+.|+||.|.....+ ..+
T Consensus 139 r~mv~~~~--------~l~-----~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~ 203 (546)
T COG4626 139 RDMVKRDD--------DLR-----DLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMY 203 (546)
T ss_pred HHHHHhCc--------chh-----hhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHH
Confidence 77654322 000 00011111 111111111222221 122333456689999999876643 444
Q ss_pred HHHHHhC--CCCcceeeeecc
Q 007481 166 HELVRLC--PKRRQTMLFSAT 184 (602)
Q Consensus 166 ~~i~~~~--~~~~q~il~SAT 184 (602)
..+..-+ .+..++++.|..
T Consensus 204 ~~~~~g~~ar~~~l~~~ITT~ 224 (546)
T COG4626 204 SEAKGGLGARPEGLVVYITTS 224 (546)
T ss_pred HHHHhhhccCcCceEEEEecC
Confidence 4444333 346677777763
No 401
>PHA00350 putative assembly protein
Probab=92.00 E-value=0.8 Score=48.77 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=31.9
Q ss_pred ceEEEeCccccccCC-----------------------cHHHHHHHHHhCCCCcceeeeeccCChhHHHHH
Q 007481 146 AVLILDEADRLLELG-----------------------FSAEIHELVRLCPKRRQTMLFSATLTEDVDELI 193 (602)
Q Consensus 146 ~llVlDEah~l~~~g-----------------------f~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~ 193 (602)
.+|||||||.+.... -...+..+..|.+...=++++|=.+. .+...+
T Consensus 83 aLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~HRH~G~DIiliTQ~~~-~Id~~i 152 (399)
T PHA00350 83 ALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRHRHYNWDIILLTPNIR-KIHSDI 152 (399)
T ss_pred CEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHHHHhcccCceEEEEeCCHH-HhhHHH
Confidence 589999999876432 12456666667777778888887764 333333
No 402
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.84 E-value=0.25 Score=51.74 Aligned_cols=42 Identities=26% Similarity=0.302 Sum_probs=29.5
Q ss_pred cCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHH
Q 007481 34 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 82 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La 82 (602)
.+.+++++|+||||||.. +-.++..+- ...+++.+=++.||.
T Consensus 161 ~~~nilI~G~tGSGKTTl-l~aLl~~i~------~~~rivtiEd~~El~ 202 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTM-SKTLISAIP------PQERLITIEDTLELV 202 (344)
T ss_pred cCCeEEEECCCCccHHHH-HHHHHcccC------CCCCEEEECCCcccc
Confidence 478999999999999974 344443331 223578888888774
No 403
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=91.83 E-value=0.28 Score=49.33 Aligned_cols=55 Identities=18% Similarity=0.096 Sum_probs=33.5
Q ss_pred HHHHHHhcC----CCEE-EEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 27 ACIPLALTG----RDIC-GSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 27 ~~i~~~l~g----~dvi-i~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
.++..+|.| ..+. ++|+.|||||...+-.++...+.......+.+|+||......
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f 84 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTF 84 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCC
Confidence 367777775 4555 999999999965433333333222222245679999765543
No 404
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=91.79 E-value=0.63 Score=47.92 Aligned_cols=17 Identities=24% Similarity=0.139 Sum_probs=14.5
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
.++++.||+|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46899999999999753
No 405
>PRK11823 DNA repair protein RadA; Provisional
Probab=91.76 E-value=0.77 Score=50.08 Aligned_cols=58 Identities=24% Similarity=0.235 Sum_probs=35.4
Q ss_pred HHHHHhcC-----CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHH
Q 007481 28 CIPLALTG-----RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 92 (602)
Q Consensus 28 ~i~~~l~g-----~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l 92 (602)
-+..++.| .-+++.+++|+|||.. ++-+...+... +.+++|+.- .+...|+......+
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL-~lq~a~~~a~~-----g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTL-LLQVAARLAAA-----GGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHH-HHHHHHHHHhc-----CCeEEEEEc-cccHHHHHHHHHHc
Confidence 34555653 4567999999999974 34444444321 336888874 34556666555544
No 406
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=91.74 E-value=1.3 Score=47.05 Aligned_cols=50 Identities=24% Similarity=0.242 Sum_probs=30.4
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHH
Q 007481 36 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 92 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l 92 (602)
.-+++.+++|+|||.. ++-+...+... +.+++|+... +...|+......+
T Consensus 83 slvLI~G~pG~GKStL-llq~a~~~a~~-----g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 83 SVILIGGDPGIGKSTL-LLQVAARLAKR-----GGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred eEEEEEeCCCCCHHHH-HHHHHHHHHhc-----CCeEEEEECC-cCHHHHHHHHHHc
Confidence 4577999999999975 34444444322 2358888654 3445665554443
No 407
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=91.70 E-value=0.28 Score=49.58 Aligned_cols=40 Identities=28% Similarity=0.345 Sum_probs=24.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHcCCCC-CCCcEEEEEcChHHHH
Q 007481 38 ICGSAITGSGKTAAFALPTLERLLYRPKR-IPAIRVLILTPTRELA 82 (602)
Q Consensus 38 vii~a~TGSGKT~a~~l~il~~l~~~~~~-~~~~~vLiL~Ptr~La 82 (602)
.+|-|||||||+-. +..++...-. ..+-.|++|+|+.-..
T Consensus 90 ~~VYGPTG~GKSqL-----lRNLis~~lI~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQL-----LRNLISCQLIQPPPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHHH-----HHHhhhcCcccCCCCceEEECCCCCCC
Confidence 44899999999952 2223322211 1233589999987553
No 408
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.67 E-value=0.47 Score=47.94 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=20.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHHHcCC
Q 007481 37 DICGSAITGSGKTAAFALPTLERLLYRP 64 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l~~~~ 64 (602)
=++|.+|||||||.. +..++..+....
T Consensus 127 LILVTGpTGSGKSTT-lAamId~iN~~~ 153 (353)
T COG2805 127 LILVTGPTGSGKSTT-LAAMIDYINKHK 153 (353)
T ss_pred eEEEeCCCCCcHHHH-HHHHHHHHhccC
Confidence 466899999999976 567777765543
No 409
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=91.66 E-value=0.12 Score=48.68 Aligned_cols=45 Identities=27% Similarity=0.367 Sum_probs=29.2
Q ss_pred HHHcCCCcEEEECcHHHHHHHHcc-CC-CCCCCcceEEEeCccccccC
Q 007481 114 TALRSMPDIVVATPGRMIDHLRNS-MS-VDLDDLAVLILDEADRLLEL 159 (602)
Q Consensus 114 ~~l~~~~~IvI~Tp~~L~~~l~~~-~~-~~l~~l~llVlDEah~l~~~ 159 (602)
......+||||+++..|++-.... .. +.+ .-.+|||||||.+.+.
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~-~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDL-KDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--C-CCEEEEETTGGGCGGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccc-cCcEEEEecccchHHH
Confidence 334566899999999987754321 11 223 3368999999998763
No 410
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.58 E-value=0.55 Score=49.09 Aligned_cols=42 Identities=24% Similarity=0.311 Sum_probs=28.5
Q ss_pred cCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHH
Q 007481 34 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 82 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La 82 (602)
.+.+++++|+||||||.. +-.++..+- ...+++++=.+.||.
T Consensus 159 ~~~nili~G~tgSGKTTl-l~aL~~~ip------~~~ri~tiEd~~El~ 200 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTF-TNAALREIP------AIERLITVEDAREIV 200 (332)
T ss_pred cCCcEEEECCCCCCHHHH-HHHHHhhCC------CCCeEEEecCCCccc
Confidence 478999999999999964 444444431 123577776666663
No 411
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=91.45 E-value=1.2 Score=50.13 Aligned_cols=16 Identities=31% Similarity=0.218 Sum_probs=13.9
Q ss_pred CEEEEcCCCchHHHHH
Q 007481 37 DICGSAITGSGKTAAF 52 (602)
Q Consensus 37 dvii~a~TGSGKT~a~ 52 (602)
-+|+.||.|+|||.++
T Consensus 40 ayLf~Gp~G~GKTt~A 55 (563)
T PRK06647 40 AYIFSGPRGVGKTSSA 55 (563)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999864
No 412
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=91.45 E-value=0.54 Score=53.78 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=23.5
Q ss_pred CCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeee
Q 007481 142 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~S 182 (602)
.....++||||||.|.... ...+...++..|....+|+.+
T Consensus 116 ~g~~KV~IIDEa~~LT~~A-~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKSA-FNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred cCCCEEEEEEChhhCCHHH-HHHHHHHhhcCCCceEEEEEc
Confidence 4567899999999876542 233444444444444444433
No 413
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=91.32 E-value=1 Score=47.11 Aligned_cols=17 Identities=24% Similarity=0.145 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
.++++.||+|+|||..+
T Consensus 52 ~~~ll~GppG~GKT~la 68 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLA 68 (328)
T ss_pred CcEEEECCCCccHHHHH
Confidence 57999999999999754
No 414
>PHA00012 I assembly protein
Probab=91.28 E-value=2.7 Score=43.33 Aligned_cols=53 Identities=13% Similarity=0.208 Sum_probs=32.6
Q ss_pred CCCCcceEEEeCccccccC-CcH----H-HHHHHHHhCCCCcceeeeeccCChhHHHHHH
Q 007481 141 DLDDLAVLILDEADRLLEL-GFS----A-EIHELVRLCPKRRQTMLFSATLTEDVDELIK 194 (602)
Q Consensus 141 ~l~~l~llVlDEah~l~~~-gf~----~-~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~ 194 (602)
+...-.++||||||..++. ++. . .+..+..+.+...-++++|-.+. .++..+.
T Consensus 78 dep~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~ps-~VDs~IR 136 (361)
T PHA00012 78 DESKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDIS-IMDKQAR 136 (361)
T ss_pred CCCCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCHH-HHhHHHH
Confidence 3455679999999987752 111 3 34445555666666777776664 4554443
No 415
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=91.21 E-value=1.4 Score=42.92 Aligned_cols=114 Identities=19% Similarity=0.193 Sum_probs=61.5
Q ss_pred HHHHhc-CC-CEEEEcCCCchHHHHHHHHHHHHHHcCC-CCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEEC
Q 007481 29 IPLALT-GR-DICGSAITGSGKTAAFALPTLERLLYRP-KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVG 105 (602)
Q Consensus 29 i~~~l~-g~-dvii~a~TGSGKT~a~~l~il~~l~~~~-~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g 105 (602)
|+.+.+ |. |.++.+|+|+|||.+ +-=+.+++... +...+.+|.|+=-..|.|- +. .|
T Consensus 129 i~~ly~~g~lntLiigpP~~GKTTl--LRdiaR~~s~g~~~~l~kkv~IiDersEIag-~~-----------------~g 188 (308)
T COG3854 129 IKDLYQNGWLNTLIIGPPQVGKTTL--LRDIARLLSDGINQFLPKKVGIIDERSEIAG-CL-----------------NG 188 (308)
T ss_pred HHHHHhcCceeeEEecCCCCChHHH--HHHHHHHhhccccccCCceEEEEeccchhhc-cc-----------------cC
Confidence 444444 33 689999999999974 55555555433 3344556666666556543 10 00
Q ss_pred CCCHHHHHHHHcCCCcEEEECc--HHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCCCccee
Q 007481 106 GLSTKMQETALRSMPDIVVATP--GRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179 (602)
Q Consensus 106 ~~~~~~~~~~l~~~~~IvI~Tp--~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~i 179 (602)
.+.. .+....||+=.-| +-++..+++.. .+++|+||.... .+...++..+....|++
T Consensus 189 -vpq~----~~g~R~dVld~cpk~~gmmmaIrsm~------PEViIvDEIGt~------~d~~A~~ta~~~GVkli 247 (308)
T COG3854 189 -VPQH----GRGRRMDVLDPCPKAEGMMMAIRSMS------PEVIIVDEIGTE------EDALAILTALHAGVKLI 247 (308)
T ss_pred -Cchh----hhhhhhhhcccchHHHHHHHHHHhcC------CcEEEEeccccH------HHHHHHHHHHhcCcEEE
Confidence 0000 0011123333333 33455555532 468999999864 44556666666666554
No 416
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=91.18 E-value=0.2 Score=55.14 Aligned_cols=58 Identities=24% Similarity=0.364 Sum_probs=41.6
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEEC
Q 007481 36 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVG 105 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g 105 (602)
.++++.||||||||..+++|.+-. .+ + .++|.=|-.+|.......++.. +.+|.++..
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~---~~----~-s~iV~D~KgEl~~~t~~~r~~~----G~~V~vldp 102 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN---YP----G-SMIVTDPKGELYEKTAGYRKKR----GYKVYVLDP 102 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh---cc----C-CEEEEECCCcHHHHHHHHHHHC----CCEEEEeec
Confidence 369999999999999999997633 11 1 4899999999987666655543 334544443
No 417
>PRK13531 regulatory ATPase RavA; Provisional
Probab=91.18 E-value=0.87 Score=49.62 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=19.8
Q ss_pred HHHHhcCCCEEEEcCCCchHHHHH
Q 007481 29 IPLALTGRDICGSAITGSGKTAAF 52 (602)
Q Consensus 29 i~~~l~g~dvii~a~TGSGKT~a~ 52 (602)
+-.++.|.++++.||+|+|||..+
T Consensus 33 l~aalag~hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 33 LLAALSGESVFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHccCCCEEEECCCChhHHHHH
Confidence 345567899999999999999753
No 418
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.16 E-value=0.59 Score=55.33 Aligned_cols=107 Identities=18% Similarity=0.260 Sum_probs=79.8
Q ss_pred hcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceE-EEEcCccccccCcCCccEEEEc
Q 007481 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF-LIATDVAARGLDIIGVQTVINY 318 (602)
Q Consensus 240 ~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~i-LVaT~~~~~GlDip~v~~VI~~ 318 (602)
.....++|||+.-....+.+...+...++....--++ ++-...+..|.+ +++ |+-+...+-|+|+-+..+|+..
T Consensus 1218 k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t---~d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~ 1292 (1394)
T KOG0298|consen 1218 KNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGET---EDFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLV 1292 (1394)
T ss_pred cCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCC---cchhhhhhhccc--ceEEEEEeccCcccccHHhhhhhhee
Confidence 3445799999999888888888887777765433332 233445666654 554 5668889999999999999999
Q ss_pred CCCCChhhHHHHhhhcccCCCc--ceEEEEEecCc
Q 007481 319 ACPRDLTSYVHRVGRTARAGRE--GYAVTFVTDND 351 (602)
Q Consensus 319 d~p~s~~~yiQriGRa~R~g~~--g~~i~l~~~~d 351 (602)
++-.++..-.|.+||..|.|+. ..+.-|+..++
T Consensus 1293 ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~T 1327 (1394)
T KOG0298|consen 1293 EPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNET 1327 (1394)
T ss_pred ccccCchHHHhhhhhhhhcccccchhhhhhhhccc
Confidence 9999999999999999999965 44444444443
No 419
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=91.12 E-value=3.4 Score=43.22 Aligned_cols=146 Identities=22% Similarity=0.147 Sum_probs=63.4
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHH---HHHHHhhc-CCceEEEEECCCCHHHHHH
Q 007481 39 CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHS---MIEKIAQF-TDIRCCLVVGGLSTKMQET 114 (602)
Q Consensus 39 ii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~---~~~~l~~~-~~i~v~~~~g~~~~~~~~~ 114 (602)
|+.++.|+|||.+..+.++..++..+. ...++++.....+...+.. .+..+... ............-
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~---~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP---GRRVIIASTYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKI------ 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS-----EEEEEESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEE------
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC---CcEEEEecCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcE------
Confidence 578999999998877777777766543 1345666444455554222 23332222 1111111111100
Q ss_pred HHcCCCcEEEECcHH--HHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeeccC--ChhHH
Q 007481 115 ALRSMPDIVVATPGR--MIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL--TEDVD 190 (602)
Q Consensus 115 ~l~~~~~IvI~Tp~~--L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SAT~--~~~~~ 190 (602)
.+.++..|.+.+... -.+.++. ..+++|++||+-.+.+..+...+........ ....+++|.|+ ...+.
T Consensus 72 ~~~nG~~i~~~~~~~~~~~~~~~G------~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~p~~~~~~~~ 144 (384)
T PF03237_consen 72 ILPNGSRIQFRGADSPDSGDNIRG------FEYDLIIIDEAAKVPDDAFSELIRRLRATWG-GSIRMYISTPPNPGGWFY 144 (384)
T ss_dssp EETTS-EEEEES-----SHHHHHT------S--SEEEEESGGGSTTHHHHHHHHHHHHCST-T--EEEEEE---SSSHHH
T ss_pred EecCceEEEEeccccccccccccc------cccceeeeeecccCchHHHHHHHHhhhhccc-CcceEEeecCCCCCCcee
Confidence 013445566655332 1233332 3366999999988766544444433333222 22222555544 33444
Q ss_pred HHHHHhcCCC
Q 007481 191 ELIKLSLTKP 200 (602)
Q Consensus 191 ~l~~~~l~~p 200 (602)
.+........
T Consensus 145 ~~~~~~~~~~ 154 (384)
T PF03237_consen 145 EIFQRNLDDD 154 (384)
T ss_dssp HHHHHHHCTS
T ss_pred eeeehhhcCC
Confidence 4444444433
No 420
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.10 E-value=0.37 Score=48.73 Aligned_cols=42 Identities=31% Similarity=0.284 Sum_probs=29.2
Q ss_pred cCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 34 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
.+.+++++|+||||||.. +-.++..+-.. ..+++++-.+.|+
T Consensus 126 ~~~~ili~G~tGSGKTT~-l~all~~i~~~-----~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTL-LNALLEEIPPE-----DERIVTIEDPPEL 167 (270)
T ss_dssp TTEEEEEEESTTSSHHHH-HHHHHHHCHTT-----TSEEEEEESSS-S
T ss_pred cceEEEEECCCccccchH-HHHHhhhcccc-----ccceEEeccccce
Confidence 367899999999999975 45555554332 2367888777776
No 421
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=91.10 E-value=2.5 Score=43.90 Aligned_cols=60 Identities=10% Similarity=0.110 Sum_probs=35.0
Q ss_pred EEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeeccC
Q 007481 122 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 185 (602)
Q Consensus 122 IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SAT~ 185 (602)
|-|-....+.+.+... ......+++|||+||.|.... .+.+..+++.-| ...+|++|..+
T Consensus 104 I~id~ir~i~~~l~~~--p~~~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~~~ 163 (314)
T PRK07399 104 IRLEQIREIKRFLSRP--PLEAPRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAPSP 163 (314)
T ss_pred CcHHHHHHHHHHHccC--cccCCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEECCh
Confidence 3333333444444432 224578999999999986543 445556666655 55555555443
No 422
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=91.07 E-value=0.17 Score=48.47 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=24.0
Q ss_pred CcceEEEeCccccccCCcH------HHHHHHHHhCCCCcceeeeeccCChhHHHHHH
Q 007481 144 DLAVLILDEADRLLELGFS------AEIHELVRLCPKRRQTMLFSATLTEDVDELIK 194 (602)
Q Consensus 144 ~l~llVlDEah~l~~~gf~------~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~ 194 (602)
.-.+|||||||...+.... ..+..+..+.+...-++++|=.+. .+...+.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~-~id~~ir 134 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPS-QIDKFIR 134 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GG-GB-HHHH
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHH-HHhHHHH
Confidence 3458999999987754322 223222233344555666666653 4444433
No 423
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=91.06 E-value=0.14 Score=54.75 Aligned_cols=56 Identities=21% Similarity=0.180 Sum_probs=40.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEE
Q 007481 37 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVV 104 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~ 104 (602)
++++.||||||||.++++|.+... ...++|+=|.-++........+. .+..|.++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~--------~~s~vv~D~Kge~~~~t~~~r~~----~G~~V~v~n 56 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW--------PGSVVVLDPKGENFELTSEHRRA----LGRKVFVFD 56 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC--------CCCEEEEccchhHHHHHHHHHHH----cCCeEEEEc
Confidence 578999999999999888876432 13589999999998766555443 244444444
No 424
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.05 E-value=0.9 Score=47.47 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=18.0
Q ss_pred HHHhcC-----CCEEEEcCCCchHHHH
Q 007481 30 PLALTG-----RDICGSAITGSGKTAA 51 (602)
Q Consensus 30 ~~~l~g-----~dvii~a~TGSGKT~a 51 (602)
|..++| +.+++.+|+|+|||+.
T Consensus 235 Pe~F~GirrPWkgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 235 PEFFKGIRRPWKGVLMVGPPGTGKTLL 261 (491)
T ss_pred HHHHhhcccccceeeeeCCCCCcHHHH
Confidence 455565 7899999999999974
No 425
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=91.01 E-value=1.8 Score=46.38 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=14.5
Q ss_pred CCEEEEcCCCchHHHH
Q 007481 36 RDICGSAITGSGKTAA 51 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a 51 (602)
+.+++.||+|+|||+.
T Consensus 166 ~gvLL~GppGtGKT~l 181 (389)
T PRK03992 166 KGVLLYGPPGTGKTLL 181 (389)
T ss_pred CceEEECCCCCChHHH
Confidence 5799999999999975
No 426
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=90.84 E-value=4.5 Score=43.15 Aligned_cols=131 Identities=18% Similarity=0.226 Sum_probs=77.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEc-ChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHH
Q 007481 38 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT-PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 116 (602)
Q Consensus 38 vii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~-Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l 116 (602)
+++++--|||||++.. -+. .++... +.++++++ .+.=-| .+++++.++...++.+.....+.+...
T Consensus 103 ImmvGLQGsGKTTt~~-KLA-~~lkk~----~~kvllVaaD~~RpA--A~eQL~~La~q~~v~~f~~~~~~~Pv~----- 169 (451)
T COG0541 103 ILMVGLQGSGKTTTAG-KLA-KYLKKK----GKKVLLVAADTYRPA--AIEQLKQLAEQVGVPFFGSGTEKDPVE----- 169 (451)
T ss_pred EEEEeccCCChHhHHH-HHH-HHHHHc----CCceEEEecccCChH--HHHHHHHHHHHcCCceecCCCCCCHHH-----
Confidence 5579999999998643 222 233321 22354444 333222 245677777777776654422222211
Q ss_pred cCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccc-cCCcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHH
Q 007481 117 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 195 (602)
Q Consensus 117 ~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~-~~gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~ 195 (602)
| ...-++.... ..+++||||=|-++- +...-+++..|...+.+.--++.+-|++..+....++.
T Consensus 170 -------I--ak~al~~ak~------~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~a 234 (451)
T COG0541 170 -------I--AKAALEKAKE------EGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKA 234 (451)
T ss_pred -------H--HHHHHHHHHH------cCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHH
Confidence 0 0111222222 236789999998865 33456778888888888877888889988887777655
Q ss_pred h
Q 007481 196 S 196 (602)
Q Consensus 196 ~ 196 (602)
+
T Consensus 235 F 235 (451)
T COG0541 235 F 235 (451)
T ss_pred H
Confidence 5
No 427
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=90.83 E-value=1.9 Score=45.33 Aligned_cols=23 Identities=26% Similarity=0.104 Sum_probs=16.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHH
Q 007481 37 DICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l 60 (602)
.+++.||.|+|||..+ ..+...+
T Consensus 38 ~~Ll~G~~G~GKt~~a-~~la~~l 60 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIA-RIFAKAL 60 (355)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 4789999999999753 3344443
No 428
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=90.80 E-value=1.1 Score=52.68 Aligned_cols=17 Identities=35% Similarity=0.522 Sum_probs=14.5
Q ss_pred CCCEEEEcCCCchHHHH
Q 007481 35 GRDICGSAITGSGKTAA 51 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a 51 (602)
+..+++.+|+|+|||..
T Consensus 347 ~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSL 363 (775)
T ss_pred CceEEEECCCCCCHHHH
Confidence 45688999999999975
No 429
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=90.77 E-value=2 Score=50.97 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=17.8
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 36 RDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
.+.|+.||+|+|||... -.+...+
T Consensus 195 ~n~lL~G~pGvGKT~l~-~~la~~i 218 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIV-EGLAQRI 218 (852)
T ss_pred CceEEEcCCCCCHHHHH-HHHHHHH
Confidence 68999999999999764 3333443
No 430
>PRK10689 transcription-repair coupling factor; Provisional
Probab=90.75 E-value=1.2 Score=54.23 Aligned_cols=76 Identities=14% Similarity=0.091 Sum_probs=63.2
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC-ccccccCcCCccEEE
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-VAARGLDIIGVQTVI 316 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~----~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~-~~~~GlDip~v~~VI 316 (602)
.+.+++|.++|...|..+...|.. .++.+..++|..+..++..++..+..|.++|||+|. .+...+++.++.+||
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 467899999999999988777664 356788899999999999999999999999999996 444456777888887
Q ss_pred E
Q 007481 317 N 317 (602)
Q Consensus 317 ~ 317 (602)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 5
No 431
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=90.75 E-value=0.11 Score=58.13 Aligned_cols=159 Identities=19% Similarity=0.169 Sum_probs=90.9
Q ss_pred CCCCCcHHHHHHHHHHhcC----------CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHH
Q 007481 17 GYSKPTPIQAACIPLALTG----------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH 86 (602)
Q Consensus 17 g~~~pt~~Q~~~i~~~l~g----------~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~ 86 (602)
..-.++..|-++|-.+.+. -.++|....|-||-....-.|++..+...+ ++|.+.-+..|--...
T Consensus 261 ~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRK-----rAlW~SVSsDLKfDAE 335 (1300)
T KOG1513|consen 261 DSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRK-----RALWFSVSSDLKFDAE 335 (1300)
T ss_pred cccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccc-----eeEEEEeccccccchh
Confidence 3456788999999776652 145665555555543223446677666543 5888888888865555
Q ss_pred HHHHHHhhcCCceEEEEECC----CCHHHHHHHHcCCCcEEEECcHHHHHHHHccCC-----------C-CCCCcceEEE
Q 007481 87 SMIEKIAQFTDIRCCLVVGG----LSTKMQETALRSMPDIVVATPGRMIDHLRNSMS-----------V-DLDDLAVLIL 150 (602)
Q Consensus 87 ~~~~~l~~~~~i~v~~~~g~----~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~-----------~-~l~~l~llVl 150 (602)
+.+.... .+++.|..+.-- .+..+. -.-.-.|+++|+-.|+.-...... + .-+.=.+|||
T Consensus 336 RDL~Dig-A~~I~V~alnK~KYakIss~en---~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvf 411 (1300)
T KOG1513|consen 336 RDLRDIG-ATGIAVHALNKFKYAKISSKEN---TNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVF 411 (1300)
T ss_pred hchhhcC-CCCccceehhhccccccccccc---CCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEe
Confidence 5565542 234544433211 111000 011236999999888764432110 0 0111258999
Q ss_pred eCccccccCC---------cHHHHHHHHHhCCCCcceeeeeccC
Q 007481 151 DEADRLLELG---------FSAEIHELVRLCPKRRQTMLFSATL 185 (602)
Q Consensus 151 DEah~l~~~g---------f~~~i~~i~~~~~~~~q~il~SAT~ 185 (602)
||||.-.+.- ....+..+...+| ..++++-|||-
T Consensus 412 DECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATG 454 (1300)
T KOG1513|consen 412 DECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATG 454 (1300)
T ss_pred hhhhhhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccC
Confidence 9999755411 3455666666676 46689999984
No 432
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=90.74 E-value=1.1 Score=49.12 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=23.4
Q ss_pred CCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeee
Q 007481 142 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~S 182 (602)
.....+|||||+|.|.... .+.+..+++..+....+|+.+
T Consensus 119 ~~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 119 KSRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred cCCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEEEe
Confidence 3567899999999986532 233444444444444444433
No 433
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=90.70 E-value=1.4 Score=46.85 Aligned_cols=18 Identities=28% Similarity=0.141 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCchHHHH
Q 007481 34 TGRDICGSAITGSGKTAA 51 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a 51 (602)
.|+-+++.||+|+|||..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred CCCEEEEECCCCCChhHH
Confidence 378899999999999975
No 434
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=90.64 E-value=0.86 Score=43.54 Aligned_cols=52 Identities=21% Similarity=0.492 Sum_probs=42.6
Q ss_pred CCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeeccCChhHHHHH
Q 007481 142 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELI 193 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~ 193 (602)
..+.+++|+||.-.=++-..+..+..++.++......++||.-.-+++..+.
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealC 200 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALC 200 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhh
Confidence 4567799999998877777788899999999988889999987766766554
No 435
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=90.52 E-value=0.25 Score=55.65 Aligned_cols=58 Identities=22% Similarity=0.104 Sum_probs=44.5
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEEC
Q 007481 36 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVG 105 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g 105 (602)
.++++.||||||||..+++|.+..+ + ..+||+=|-.|+........+++ |..|.++..
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~---~-----~S~VV~DpKGEl~~~Ta~~R~~~----G~~V~vfdP 216 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW---E-----DSVVVHDIKLENYELTSGWREKQ----GQKVFVWEP 216 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC---C-----CCEEEEeCcHHHHHHHHHHHHHC----CCeEEEEeC
Confidence 5789999999999999999988653 1 23899999999988777666653 555555543
No 436
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=90.51 E-value=2.4 Score=41.90 Aligned_cols=39 Identities=31% Similarity=0.259 Sum_probs=25.4
Q ss_pred cCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcC
Q 007481 34 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 77 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~P 77 (602)
.|.-++|.|++|+|||.. ++-++..+.... +.++++++.
T Consensus 12 ~G~l~lI~G~~G~GKT~~-~~~~~~~~~~~~----g~~vly~s~ 50 (242)
T cd00984 12 PGDLIIIAARPSMGKTAF-ALNIAENIAKKQ----GKPVLFFSL 50 (242)
T ss_pred CCeEEEEEeCCCCCHHHH-HHHHHHHHHHhC----CCceEEEeC
Confidence 356788999999999964 444444444321 335788873
No 437
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.51 E-value=0.75 Score=52.22 Aligned_cols=41 Identities=15% Similarity=0.188 Sum_probs=25.2
Q ss_pred CCCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeee
Q 007481 141 DLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182 (602)
Q Consensus 141 ~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~S 182 (602)
.+...+++||||+|.|.... .+.+..+++..|...-+|+.|
T Consensus 118 ~~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred ccCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 35678899999999986542 334555555544444444433
No 438
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=90.46 E-value=0.69 Score=43.50 Aligned_cols=53 Identities=17% Similarity=0.345 Sum_probs=43.3
Q ss_pred CCCcceEEEeCccccccCCcH--HHHHHHHHhCCCCcceeeeeccCChhHHHHHH
Q 007481 142 LDDLAVLILDEADRLLELGFS--AEIHELVRLCPKRRQTMLFSATLTEDVDELIK 194 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~gf~--~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~ 194 (602)
-..+++||+||+-..++.|+. +.+..++...|...-+|+..-.+|+.+.+.+.
T Consensus 113 ~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 113 EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCC
Confidence 356889999999999988864 66778888888888888888899988887664
No 439
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.46 E-value=0.53 Score=48.74 Aligned_cols=58 Identities=33% Similarity=0.362 Sum_probs=42.6
Q ss_pred CCCCcHHHHHHHHHHhc-CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHH
Q 007481 18 YSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 82 (602)
Q Consensus 18 ~~~pt~~Q~~~i~~~l~-g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La 82 (602)
+..+++.|..-+..++. +++++++++||||||.. +.+++..+ .+..+++.+=-|.++.
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~I------p~~~rivtIEdt~E~~ 183 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFI------PPEERIVTIEDTPELK 183 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhC------CchhcEEEEecccccc
Confidence 55678888888777665 68999999999999975 56665544 2344678887777763
No 440
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=90.39 E-value=1.8 Score=42.71 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=29.8
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 92 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l 92 (602)
|.-+++.|++|+|||... ..++.....+ +.+++++.-- +-..++.+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~-~~~~~~~~~~-----g~~~~y~~~e-~~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLS-QQFVYGALKQ-----GKKVYVITTE-NTSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHH-HHHHHHHHhC-----CCEEEEEEcC-CCHHHHHHHHHHC
Confidence 356779999999999654 3333332222 3356776654 3334555555554
No 441
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=90.39 E-value=1 Score=45.21 Aligned_cols=116 Identities=16% Similarity=0.102 Sum_probs=57.2
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 114 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~ 114 (602)
|.=+++.|.||.|||.. ++-+...+.... +..|+|++.--. ..++...+-... .++....+..+.-....+.
T Consensus 19 g~L~vi~a~pg~GKT~~-~l~ia~~~a~~~----~~~vly~SlEm~-~~~l~~R~la~~--s~v~~~~i~~g~l~~~e~~ 90 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAF-ALQIALNAALNG----GYPVLYFSLEMS-EEELAARLLARL--SGVPYNKIRSGDLSDEEFE 90 (259)
T ss_dssp T-EEEEEESTTSSHHHH-HHHHHHHHHHTT----SSEEEEEESSS--HHHHHHHHHHHH--HTSTHHHHHCCGCHHHHHH
T ss_pred CcEEEEEecccCCchHH-HHHHHHHHHHhc----CCeEEEEcCCCC-HHHHHHHHHHHh--hcchhhhhhccccCHHHHH
Confidence 34577999999999964 555555555432 246888876311 122332222211 1222222222222222222
Q ss_pred H-------HcCCCcEEEEC----cHHHHHHHHccCCCCCCCcceEEEeCccccccC
Q 007481 115 A-------LRSMPDIVVAT----PGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 159 (602)
Q Consensus 115 ~-------l~~~~~IvI~T----p~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~ 159 (602)
. +...+-++..+ ++.+.+.+...... ...+++||||=.|.+...
T Consensus 91 ~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~-~~~~~~v~IDyl~ll~~~ 145 (259)
T PF03796_consen 91 RLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKRE-GKKVDVVFIDYLQLLKSE 145 (259)
T ss_dssp HHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHH-STTEEEEEEEEGGGSBTS
T ss_pred HHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhh-ccCCCEEEechHHHhcCC
Confidence 1 33333233343 44555544432111 156789999999988763
No 442
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.37 E-value=0.45 Score=49.84 Aligned_cols=102 Identities=26% Similarity=0.329 Sum_probs=56.8
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHH
Q 007481 36 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~ 115 (602)
+|++..+|+|+|||+++ ++| +...++...+++||.-...-..
T Consensus 385 RNilfyGPPGTGKTm~A--------------------------rel-----------Ar~SGlDYA~mTGGDVAPlG~q- 426 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA--------------------------REL-----------ARHSGLDYAIMTGGDVAPLGAQ- 426 (630)
T ss_pred hheeeeCCCCCCchHHH--------------------------HHH-----------HhhcCCceehhcCCCccccchH-
Confidence 79999999999999753 122 2334677777777743221111
Q ss_pred HcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC--------cHHHHHHHHHh-CCCCcceeeeeccCC
Q 007481 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG--------FSAEIHELVRL-CPKRRQTMLFSATLT 186 (602)
Q Consensus 116 l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g--------f~~~i~~i~~~-~~~~~q~il~SAT~~ 186 (602)
-|+--..|+|+-..+. -.| +|+|||||-++..- .+..+..++-. -...+.++|+=||-.
T Consensus 427 -------aVTkiH~lFDWakkS~-rGL----llFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNr 494 (630)
T KOG0742|consen 427 -------AVTKIHKLFDWAKKSR-RGL----LLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNR 494 (630)
T ss_pred -------HHHHHHHHHHHHhhcc-cce----EEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCC
Confidence 1233344555544321 111 78999999765311 22333333322 234566788888754
Q ss_pred h
Q 007481 187 E 187 (602)
Q Consensus 187 ~ 187 (602)
+
T Consensus 495 p 495 (630)
T KOG0742|consen 495 P 495 (630)
T ss_pred c
Confidence 3
No 443
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.27 E-value=0.26 Score=50.04 Aligned_cols=25 Identities=40% Similarity=0.409 Sum_probs=19.1
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHHHc
Q 007481 36 RDICGSAITGSGKTAAFALPTLERLLY 62 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l~~ 62 (602)
.|+++.+|||||||+. .-.|.+++.
T Consensus 98 SNILLiGPTGsGKTlL--AqTLAk~Ln 122 (408)
T COG1219 98 SNILLIGPTGSGKTLL--AQTLAKILN 122 (408)
T ss_pred ccEEEECCCCCcHHHH--HHHHHHHhC
Confidence 4799999999999974 445666553
No 444
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=90.22 E-value=3.9 Score=41.41 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=23.0
Q ss_pred HHHHHHhcC---CCEEEEcCCCchHHHHHHHHHHHHHHc
Q 007481 27 ACIPLALTG---RDICGSAITGSGKTAAFALPTLERLLY 62 (602)
Q Consensus 27 ~~i~~~l~g---~dvii~a~TGSGKT~a~~l~il~~l~~ 62 (602)
..++.+... +++++.+|+|||||+. +-++..++.
T Consensus 100 ~~l~~l~~~~~~~~~~i~g~~g~GKttl--~~~l~~~~~ 136 (270)
T TIGR02858 100 KLLPYLVRNNRVLNTLIISPPQCGKTTL--LRDLARILS 136 (270)
T ss_pred HHHHHHHhCCCeeEEEEEcCCCCCHHHH--HHHHhCccC
Confidence 345556543 5889999999999974 444444443
No 445
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=90.17 E-value=2.1 Score=43.11 Aligned_cols=37 Identities=19% Similarity=0.070 Sum_probs=23.2
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcC
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 77 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~P 77 (602)
|.-++|.|++|+|||... +-++...... +.+++|++-
T Consensus 36 gs~~lI~G~pGtGKT~l~-~qf~~~~a~~-----Ge~vlyis~ 72 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMV-EQFAVTQASR-----GNPVLFVTV 72 (259)
T ss_pred CcEEEEEcCCCCCHHHHH-HHHHHHHHhC-----CCcEEEEEe
Confidence 456779999999999654 3333332222 235777774
No 446
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=90.15 E-value=0.61 Score=50.04 Aligned_cols=138 Identities=17% Similarity=0.123 Sum_probs=74.8
Q ss_pred CcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhc-----
Q 007481 21 PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF----- 95 (602)
Q Consensus 21 pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~----- 95 (602)
+-..|.++.-..-.|.. .|.+-.|||||.....-+.+....+ +..+++|.+=|+.|+.++...+.+|+-.
T Consensus 163 fD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~kn----Pd~~I~~Tfftk~L~s~~r~lv~~F~f~~~e~~ 237 (660)
T COG3972 163 FDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHSKN----PDSRIAFTFFTKILASTMRTLVPEFFFMRVEKQ 237 (660)
T ss_pred ccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhcCC----CCceEEEEeehHHHHHHHHHHHHHHHHHHhhcC
Confidence 33445555433334544 5677889999986443333332223 4568999999999999998888877632
Q ss_pred ---CCceEEEEECCCCHHHHHHH---HcCCCcEEEEC----cHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHH
Q 007481 96 ---TDIRCCLVVGGLSTKMQETA---LRSMPDIVVAT----PGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI 165 (602)
Q Consensus 96 ---~~i~v~~~~g~~~~~~~~~~---l~~~~~IvI~T----p~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i 165 (602)
..+.++.-.||.+..-.... ......+-++- ..-.+.-+-+. .-....+++|.|||++-+++. |.+.+
T Consensus 238 pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~-~~~~~~yD~ilIDE~QDFP~~-F~~Lc 315 (660)
T COG3972 238 PDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIAD-INNKKAYDYILIDESQDFPQS-FIDLC 315 (660)
T ss_pred CCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHh-hhccccccEEEecccccCCHH-HHHHH
Confidence 13445555555443221111 11111121111 11112222211 122566889999999987654 44433
No 447
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=90.10 E-value=0.83 Score=48.25 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=26.6
Q ss_pred HHHHCCCCCCcHHHHHHHHHHh-cCCCEEEEcCCCchHHHHHHHHHHHHHH
Q 007481 12 ACEALGYSKPTPIQAACIPLAL-TGRDICGSAITGSGKTAAFALPTLERLL 61 (602)
Q Consensus 12 ~l~~~g~~~pt~~Q~~~i~~~l-~g~dvii~a~TGSGKT~a~~l~il~~l~ 61 (602)
.+.++|++ ..+ +..+. .+..++++||||||||.. +..++..+.
T Consensus 116 ~l~~l~~~--~~~----~~~~~~~~glilI~GpTGSGKTTt-L~aLl~~i~ 159 (358)
T TIGR02524 116 KLSKLDLP--AAI----IDAIAPQEGIVFITGATGSGKSTL-LAAIIRELA 159 (358)
T ss_pred CHHHcCCC--HHH----HHHHhccCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 35667763 222 22233 466788999999999975 344555443
No 448
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=90.07 E-value=1.5 Score=51.87 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=17.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHcC
Q 007481 38 ICGSAITGSGKTAAFALPTLERLLYR 63 (602)
Q Consensus 38 vii~a~TGSGKT~a~~l~il~~l~~~ 63 (602)
++++||||+|||..+ -.+...+..
T Consensus 599 ~lf~Gp~GvGKT~lA--~~La~~l~~ 622 (852)
T TIGR03345 599 FLLVGPSGVGKTETA--LALAELLYG 622 (852)
T ss_pred EEEECCCCCCHHHHH--HHHHHHHhC
Confidence 789999999999753 344444443
No 449
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=90.02 E-value=0.42 Score=53.77 Aligned_cols=56 Identities=18% Similarity=0.279 Sum_probs=47.6
Q ss_pred HHHHHHhcCCceEEEEcCccccccCcCCccEEE--------EcCCCCChhhHHHHhhhcccCCC
Q 007481 284 EALELFRKQHVDFLIATDVAARGLDIIGVQTVI--------NYACPRDLTSYVHRVGRTARAGR 339 (602)
Q Consensus 284 ~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI--------~~d~p~s~~~yiQriGRa~R~g~ 339 (602)
.--++|.+|+-.|-|-+.+++-||.++.-.-|+ -+.+|||...-||..|||+|.+.
T Consensus 848 ~EKqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQ 911 (1300)
T KOG1513|consen 848 REKQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQ 911 (1300)
T ss_pred HHHhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccc
Confidence 345679999999999999999999997655444 58999999999999999999653
No 450
>CHL00095 clpC Clp protease ATP binding subunit
Probab=89.91 E-value=2.8 Score=49.57 Aligned_cols=17 Identities=29% Similarity=0.153 Sum_probs=15.3
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
.++|+.||+|.|||+++
T Consensus 201 ~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 201 NNPILIGEPGVGKTAIA 217 (821)
T ss_pred CCeEEECCCCCCHHHHH
Confidence 58999999999999864
No 451
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.90 E-value=3.1 Score=45.60 Aligned_cols=90 Identities=20% Similarity=0.296 Sum_probs=65.5
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhhc----CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC-----ccccc-cCcCCc
Q 007481 243 TSKVIIFSGTKQAAHRLKILFGLA----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VAARG-LDIIGV 312 (602)
Q Consensus 243 ~~kvIIF~~s~~~a~~l~~~L~~~----g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~-----~~~~G-lDip~v 312 (602)
+..+||.++|++.|..+...+... ++.+..++|+.+...+..-++ .-++|+|||+ .+..| +|+..|
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~----~gvdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLE----RGVDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHh----cCCcEEEeCChHHHHHHHcCCccccce
Confidence 456999999999999998877665 355788999999877666665 4689999995 44555 788899
Q ss_pred cEEEEcC--------CCCChhhHHHHhhhccc
Q 007481 313 QTVINYA--------CPRDLTSYVHRVGRTAR 336 (602)
Q Consensus 313 ~~VI~~d--------~p~s~~~yiQriGRa~R 336 (602)
+++|.=. +-......++.++|..|
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 9988422 22245556666666555
No 452
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=89.81 E-value=1.3 Score=49.03 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCchHHHH
Q 007481 35 GRDICGSAITGSGKTAA 51 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a 51 (602)
.+.+++.||+|+|||..
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 36799999999999975
No 453
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=89.60 E-value=1.4 Score=46.74 Aligned_cols=27 Identities=19% Similarity=0.094 Sum_probs=19.6
Q ss_pred cCCCEEEEcCCCchHHHHHHHHHHHHHH
Q 007481 34 TGRDICGSAITGSGKTAAFALPTLERLL 61 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a~~l~il~~l~ 61 (602)
.|+-.+|.||.|+|||... --+...+.
T Consensus 168 kGQR~lIvgppGvGKTTLa-K~Ian~I~ 194 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLL-QNIANSIT 194 (416)
T ss_pred cCceEEEeCCCCCChhHHH-HHHHHHHH
Confidence 4788999999999999642 33444443
No 454
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=89.58 E-value=0.87 Score=48.31 Aligned_cols=44 Identities=18% Similarity=0.073 Sum_probs=27.1
Q ss_pred cCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 34 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
.+..+++++|||||||.. +..++..+.... +..+++.+=...|+
T Consensus 148 ~~GlilI~G~TGSGKTT~-l~al~~~i~~~~---~~~~IvtiEdp~E~ 191 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTL-AASIYQHCGETY---PDRKIVTYEDPIEY 191 (372)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHHhcC---CCceEEEEecCchh
Confidence 345788999999999975 455666654321 12245655444444
No 455
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=89.28 E-value=0.95 Score=51.88 Aligned_cols=90 Identities=20% Similarity=0.218 Sum_probs=68.9
Q ss_pred hhhhHHHHHHHHhhh--cCCCeEEEEeCcHHHHHHHHHHHhh-cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc
Q 007481 226 REVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGL-AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302 (602)
Q Consensus 226 ~~~~k~~~l~~l~~~--~~~~kvIIF~~s~~~a~~l~~~L~~-~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~ 302 (602)
..+.+.+++..++.. ..+..+||.++.+.....+...|.. .|.++.++|+++++.+|.....+..+|+..|+|+|..
T Consensus 226 TGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRS 305 (730)
T COG1198 226 TGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRS 305 (730)
T ss_pred CCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEech
Confidence 445566666665543 2356899999988888877777764 3789999999999999999999999999999999965
Q ss_pred cccccCcCCccEEE
Q 007481 303 AARGLDIIGVQTVI 316 (602)
Q Consensus 303 ~~~GlDip~v~~VI 316 (602)
+-. +-+++.-+||
T Consensus 306 AlF-~Pf~~LGLII 318 (730)
T COG1198 306 ALF-LPFKNLGLII 318 (730)
T ss_pred hhc-CchhhccEEE
Confidence 432 3455666666
No 456
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=89.23 E-value=4 Score=48.31 Aligned_cols=32 Identities=22% Similarity=0.170 Sum_probs=22.8
Q ss_pred CcHHHHHHHHHHhc------CCCEEEEcCCCchHHHHH
Q 007481 21 PTPIQAACIPLALT------GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 21 pt~~Q~~~i~~~l~------g~dvii~a~TGSGKT~a~ 52 (602)
|---|..-|..++. ..++|+.||+|+|||+..
T Consensus 188 ~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred cccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 33346666665543 368999999999999753
No 457
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=89.20 E-value=0.94 Score=47.52 Aligned_cols=63 Identities=27% Similarity=0.225 Sum_probs=41.9
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHhc-CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 10 LRACEALGYSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 10 l~~l~~~g~~~pt~~Q~~~i~~~l~-g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+..|...|+. ++.+.+.+..+.. +.+++++++||||||.. +-.++..+ . +..+++++-.+.||
T Consensus 154 l~~l~~~g~~--~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i-~-----~~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGTF--PPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALV-A-----PDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCCC--CHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccC-C-----CCCcEEEECCccee
Confidence 4555666663 5677777776665 57999999999999974 23333322 2 22357888777777
No 458
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=89.14 E-value=3.5 Score=43.09 Aligned_cols=41 Identities=12% Similarity=0.250 Sum_probs=27.0
Q ss_pred CCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeec
Q 007481 142 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSA 183 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SA 183 (602)
....+++||||+|.|.... .+.+..+++.-|....+|+.|.
T Consensus 108 ~~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEEEeC
Confidence 4567899999999986542 4445555665555555565444
No 459
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=88.99 E-value=1.3 Score=49.20 Aligned_cols=68 Identities=29% Similarity=0.469 Sum_probs=55.0
Q ss_pred EEEEeCcHHHHHHHHHHHhhc-----CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC-----ccccc-cCcCCccE
Q 007481 246 VIIFSGTKQAAHRLKILFGLA-----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VAARG-LDIIGVQT 314 (602)
Q Consensus 246 vIIF~~s~~~a~~l~~~L~~~-----g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~-----~~~~G-lDip~v~~ 314 (602)
+||+++|++.|..+++.+... ++.+..++|+++...+...+.. | .+|||+|+ .+.+| +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 999999999999998777643 4678899999998776655544 6 99999996 45666 88899999
Q ss_pred EEE
Q 007481 315 VIN 317 (602)
Q Consensus 315 VI~ 317 (602)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 884
No 460
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=88.98 E-value=1.4 Score=50.73 Aligned_cols=71 Identities=20% Similarity=0.149 Sum_probs=53.8
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 20 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
.++|-|.+++... ...++|.|..|||||.+..--+.+.+.. .. ..+..+|.|+=|+-.|.++.+.+..+..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~-~~-v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAA-GG-VDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHc-CC-cChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5789999998777 6788899999999998754444444433 22 2445699999999999999888887653
No 461
>PRK14701 reverse gyrase; Provisional
Probab=88.93 E-value=1.3 Score=55.54 Aligned_cols=61 Identities=20% Similarity=0.161 Sum_probs=53.3
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhc------CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGLA------ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~~------g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~ 302 (602)
.+.++||.++|+..+.++...|... ++.+..+||+++..++.++++.+.+|..+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4568999999999999988887762 467789999999999999999999999999999974
No 462
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=88.91 E-value=2.5 Score=46.29 Aligned_cols=50 Identities=20% Similarity=0.189 Sum_probs=31.4
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHH
Q 007481 36 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 92 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l 92 (602)
.-+++.+++|+|||... +-++..+... +.+++|+..- +-..|+......+
T Consensus 95 svilI~G~pGsGKTTL~-lq~a~~~a~~-----g~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLL-LQVACQLAKN-----QMKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred eEEEEEcCCCCCHHHHH-HHHHHHHHhc-----CCcEEEEECc-CCHHHHHHHHHHc
Confidence 45779999999999753 4444444332 2358888754 4456665555543
No 463
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=88.87 E-value=0.47 Score=44.90 Aligned_cols=42 Identities=14% Similarity=0.253 Sum_probs=27.7
Q ss_pred CCcceEEEeCccccccCCcHHHHHHHHHhC-CCCcceeeeecc
Q 007481 143 DDLAVLILDEADRLLELGFSAEIHELVRLC-PKRRQTMLFSAT 184 (602)
Q Consensus 143 ~~l~llVlDEah~l~~~gf~~~i~~i~~~~-~~~~q~il~SAT 184 (602)
...+++++||...-++......+..++..+ ....++++.|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 456799999999888876666665555543 233556665544
No 464
>PRK13764 ATPase; Provisional
Probab=88.74 E-value=0.71 Score=51.86 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=19.8
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLL 61 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~ 61 (602)
.++++++||||||||.. +..++..+.
T Consensus 257 ~~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 67899999999999974 455555553
No 465
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.56 E-value=5.6 Score=43.75 Aligned_cols=121 Identities=11% Similarity=0.117 Sum_probs=79.8
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc-cc------cc-CcCCccE
Q 007481 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-AR------GL-DIIGVQT 314 (602)
Q Consensus 243 ~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~-~~------Gl-Dip~v~~ 314 (602)
++.+||+++++..+......|...|+.+..++|+.+..++..++..+..|..++|++|+-. .. .+ ....+.+
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~ 130 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITL 130 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCE
Confidence 5679999999999998888899999999999999999999999999999999999998532 11 12 4456777
Q ss_pred EEEcCCC----C--ChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhc
Q 007481 315 VINYACP----R--DLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAG 363 (602)
Q Consensus 315 VI~~d~p----~--s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~ 363 (602)
||.-.+. | +...-..+++...+.-..-..+.+....+......+.+.++
T Consensus 131 iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~ 185 (470)
T TIGR00614 131 IAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLN 185 (470)
T ss_pred EEEeCCcccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcC
Confidence 7643322 1 11222234443322222223444444455555556655543
No 466
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.53 E-value=3.7 Score=44.76 Aligned_cols=51 Identities=20% Similarity=0.081 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHH----Hhc----C----CCEEEEcCCCchHHHHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPL----ALT----G----RDICGSAITGSGKTAAF 52 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~----~l~----g----~dvii~a~TGSGKT~a~ 52 (602)
.+|.++..+..+...|.-.-.|-=.+.+.. +.+ . -.+++.+|.|||||+.+
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLA 555 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALA 555 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHH
Confidence 368888888888877766555554444422 111 1 36889999999999643
No 467
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=88.52 E-value=0.43 Score=54.43 Aligned_cols=57 Identities=19% Similarity=0.069 Sum_probs=42.1
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEE
Q 007481 36 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVV 104 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~ 104 (602)
.++++.||||||||..+++|.+-.+ + ..+||+=|--|+........+.. +..|.++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~---~-----gS~VV~DpKGE~~~~Ta~~R~~~----G~~V~~Fn 196 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF---K-----GSVIALDVKGELFELTSRARKAS----GDAVFKFA 196 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC---C-----CCEEEEeCCchHHHHHHHHHHhC----CCEEEEec
Confidence 4899999999999999999986542 1 24899999999987666555542 44454443
No 468
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=88.47 E-value=2.9 Score=43.30 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=25.0
Q ss_pred CCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeee
Q 007481 142 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~S 182 (602)
....+++|||+||.|.... .+.+...++..|...-+|+.|
T Consensus 91 ~~~~kv~iI~~ad~m~~~a-~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQA-QNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHhcCCCCCeEEEEEe
Confidence 4568899999999986543 344445555544444444444
No 469
>PRK05748 replicative DNA helicase; Provisional
Probab=88.44 E-value=2.3 Score=46.55 Aligned_cols=112 Identities=18% Similarity=0.148 Sum_probs=55.1
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEE-ECCCCHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV-VGGLSTKMQE 113 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~-~g~~~~~~~~ 113 (602)
|.-++|.|+||.|||. |.+-++..+.... +..|+|++ .-+-..|+...+-. ...++....+ .|..+. ..|
T Consensus 203 G~livIaarpg~GKT~-~al~ia~~~a~~~----g~~v~~fS-lEms~~~l~~R~l~--~~~~v~~~~i~~~~l~~-~e~ 273 (448)
T PRK05748 203 NDLIIVAARPSVGKTA-FALNIAQNVATKT----DKNVAIFS-LEMGAESLVMRMLC--AEGNIDAQRLRTGQLTD-DDW 273 (448)
T ss_pred CceEEEEeCCCCCchH-HHHHHHHHHHHhC----CCeEEEEe-CCCCHHHHHHHHHH--HhcCCCHHHhhcCCCCH-HHH
Confidence 3557799999999996 4566655543221 22466654 33344455444432 1123222211 233332 222
Q ss_pred H-------HHcCCCcEEEE-----CcHHHHHHHHccCCCCCCCcceEEEeCccccc
Q 007481 114 T-------ALRSMPDIVVA-----TPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 157 (602)
Q Consensus 114 ~-------~l~~~~~IvI~-----Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~ 157 (602)
. .+.. ..+.|. |+..+...++.... ....+++||||=.|.|.
T Consensus 274 ~~~~~a~~~l~~-~~~~i~d~~~~ti~~i~~~~r~~~~-~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 274 PKLTIAMGSLSD-APIYIDDTPGIKVTEIRARCRRLAQ-EHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCEEEEccchhcC
Confidence 2 1223 335443 34445444432110 01257899999999875
No 470
>PRK08840 replicative DNA helicase; Provisional
Probab=88.41 E-value=3 Score=45.75 Aligned_cols=113 Identities=18% Similarity=0.163 Sum_probs=55.0
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEE-ECCCCHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV-VGGLSTKMQE 113 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~-~g~~~~~~~~ 113 (602)
|.-+|+.|.||.|||+. .+-+...+... .+..|+|+..- .-..|+...+-.. ..++....+ .|..+.. .|
T Consensus 217 g~LiviaarPg~GKTaf-alnia~~~a~~----~~~~v~~fSlE-Ms~~ql~~Rlla~--~s~v~~~~i~~~~l~~~-e~ 287 (464)
T PRK08840 217 SDLIIVAARPSMGKTTF-AMNLCENAAMD----QDKPVLIFSLE-MPAEQLMMRMLAS--LSRVDQTKIRTGQLDDE-DW 287 (464)
T ss_pred CceEEEEeCCCCchHHH-HHHHHHHHHHh----CCCeEEEEecc-CCHHHHHHHHHHh--hCCCCHHHHhcCCCCHH-HH
Confidence 45677899999999964 44444443322 12246666433 3345555444332 223322222 2333322 23
Q ss_pred HH-------HcCCCcEEEE-----CcHHHHHHHHccCCCCCCCcceEEEeCccccc
Q 007481 114 TA-------LRSMPDIVVA-----TPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 157 (602)
Q Consensus 114 ~~-------l~~~~~IvI~-----Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~ 157 (602)
.. +.....+.|. |+..+...++... .....+++||||=.|.|.
T Consensus 288 ~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~-~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 288 ARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIA-REHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HhcCCCCEEEEccHHhcC
Confidence 22 2223345553 2334433332211 111247899999988875
No 471
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=88.40 E-value=1 Score=47.45 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=27.0
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+..++++||||||||.. +..++..+... ...+++.+-...|+
T Consensus 122 ~g~ili~G~tGSGKTT~-l~al~~~i~~~----~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTT-LASMIDYINKN----AAGHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHhhCcC----CCCEEEEEcCChhh
Confidence 56788999999999975 34455444321 12357776665554
No 472
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=88.39 E-value=5.1 Score=45.50 Aligned_cols=121 Identities=13% Similarity=0.080 Sum_probs=78.4
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccc------cccCcCCccEEE
Q 007481 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA------RGLDIIGVQTVI 316 (602)
Q Consensus 243 ~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~------~GlDip~v~~VI 316 (602)
.+.+||.++++..+......|...|+.+..+||+++..++..++..+..|.+++|++|+--- .-+....+.+||
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iV 132 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVA 132 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEE
Confidence 46789999999999988888999999999999999999999999999999999999884321 112334566666
Q ss_pred EcCCC----C--ChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhc
Q 007481 317 NYACP----R--DLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAG 363 (602)
Q Consensus 317 ~~d~p----~--s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~ 363 (602)
.-.+. | +...-..+++.....-....++.+....+......+...++
T Consensus 133 iDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~ 185 (591)
T TIGR01389 133 VDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLR 185 (591)
T ss_pred EeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcC
Confidence 32211 1 11222244554322111112455544555555555655543
No 473
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=88.37 E-value=0.14 Score=46.95 Aligned_cols=117 Identities=19% Similarity=0.218 Sum_probs=59.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHH
Q 007481 37 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 116 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l 116 (602)
.+.+.+++|+|||.. ++-+.+.+....-.. .=|+||- ++.=.+..++++.-+..|... +...
T Consensus 7 ki~ITG~PGvGKtTl-~~ki~e~L~~~g~kv----gGf~t~E----------VR~gGkR~GF~Ivdl~tg~~~---~la~ 68 (179)
T COG1618 7 KIFITGRPGVGKTTL-VLKIAEKLREKGYKV----GGFITPE----------VREGGKRIGFKIVDLATGEEG---ILAR 68 (179)
T ss_pred EEEEeCCCCccHHHH-HHHHHHHHHhcCcee----eeEEeee----------eecCCeEeeeEEEEccCCceE---EEEE
Confidence 578999999999975 466666665442111 1345442 233333446666555533110 0000
Q ss_pred cCCCcEEEECcHHHHHHHHccCCC----CCCCcceEEEeCccccc--cCCcHHHHHHHHHh
Q 007481 117 RSMPDIVVATPGRMIDHLRNSMSV----DLDDLAVLILDEADRLL--ELGFSAEIHELVRL 171 (602)
Q Consensus 117 ~~~~~IvI~Tp~~L~~~l~~~~~~----~l~~l~llVlDEah~l~--~~gf~~~i~~i~~~ 171 (602)
......-|+-++...+.+.+-... .+..-+++|+||.--|- ...|.+.+.+++..
T Consensus 69 ~~~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 69 VGFSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred cCCCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 011222333333333333211000 12335799999999654 44578888777644
No 474
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=88.35 E-value=2 Score=48.06 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=19.1
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLL 61 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~ 61 (602)
|+-+.+.||+|||||+ ++-++..+.
T Consensus 361 G~~vaIvG~SGsGKST--Ll~lL~g~~ 385 (529)
T TIGR02868 361 GERVAILGPSGSGKST--LLMLLTGLL 385 (529)
T ss_pred CCEEEEECCCCCCHHH--HHHHHhcCC
Confidence 6788899999999997 355555543
No 475
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=88.25 E-value=3.2 Score=48.45 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchHHHH
Q 007481 35 GRDICGSAITGSGKTAA 51 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a 51 (602)
++.+++.||+|+|||..
T Consensus 212 ~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CceEEEECCCCCChHHH
Confidence 47899999999999974
No 476
>PRK10865 protein disaggregation chaperone; Provisional
Probab=88.18 E-value=4.5 Score=47.97 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=17.7
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 36 RDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
.++|+.||+|+|||... -.+...+
T Consensus 200 ~n~lL~G~pGvGKT~l~-~~la~~i 223 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIV-EGLAQRI 223 (857)
T ss_pred CceEEECCCCCCHHHHH-HHHHHHh
Confidence 58999999999999764 3333343
No 477
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=88.08 E-value=1.9 Score=48.59 Aligned_cols=113 Identities=24% Similarity=0.426 Sum_probs=67.6
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHH---------------------HHHHHHHh--------cCCCEEEEcCCCchHHHHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQ---------------------AACIPLAL--------TGRDICGSAITGSGKTAAF 52 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q---------------------~~~i~~~l--------~g~dvii~a~TGSGKT~a~ 52 (602)
++++.+..|..|..+.|..-+.-+ .+++..+. +|+=+++.+|+|-|||.+.
T Consensus 376 EfnvtrNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~ 455 (906)
T KOG2004|consen 376 EFNVTRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIA 455 (906)
T ss_pred chhHHHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHH
Confidence 466777888888888777655433 33333332 2566779999999999753
Q ss_pred HHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCC-cEEEECcHHHH
Q 007481 53 ALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP-DIVVATPGRMI 131 (602)
Q Consensus 53 ~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~-~IvI~Tp~~L~ 131 (602)
-.|...+ .. +| +..-+||..... .+++.. ..|=+-||+++
T Consensus 456 -kSIA~AL-----------------------------nR--kF----fRfSvGG~tDvA---eIkGHRRTYVGAMPGkiI 496 (906)
T KOG2004|consen 456 -KSIARAL-----------------------------NR--KF----FRFSVGGMTDVA---EIKGHRRTYVGAMPGKII 496 (906)
T ss_pred -HHHHHHh-----------------------------CC--ce----EEEeccccccHH---hhcccceeeeccCChHHH
Confidence 2222111 10 11 122345555432 233333 34556799999
Q ss_pred HHHHccCCCCCCCcceEEEeCccccc
Q 007481 132 DHLRNSMSVDLDDLAVLILDEADRLL 157 (602)
Q Consensus 132 ~~l~~~~~~~l~~l~llVlDEah~l~ 157 (602)
+.|..-...+ -++.|||+|.+-
T Consensus 497 q~LK~v~t~N----PliLiDEvDKlG 518 (906)
T KOG2004|consen 497 QCLKKVKTEN----PLILIDEVDKLG 518 (906)
T ss_pred HHHHhhCCCC----ceEEeehhhhhC
Confidence 9998633221 289999999987
No 478
>PRK06321 replicative DNA helicase; Provisional
Probab=88.08 E-value=3.4 Score=45.42 Aligned_cols=124 Identities=20% Similarity=0.205 Sum_probs=61.8
Q ss_pred CcHHHHHHHHHHhcC----CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcC
Q 007481 21 PTPIQAACIPLALTG----RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 96 (602)
Q Consensus 21 pt~~Q~~~i~~~l~g----~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~ 96 (602)
||.+ ..+..++.| .=+||.|.||.|||. |.+-+...+.... +..|+|++ .-.-..|+...+-.. ..
T Consensus 210 ~tG~--~~LD~~t~Gl~~G~LiiiaarPgmGKTa-fal~ia~~~a~~~----g~~v~~fS-LEMs~~ql~~Rlla~--~s 279 (472)
T PRK06321 210 PTHF--IDLDKMINGFSPSNLMILAARPAMGKTA-LALNIAENFCFQN----RLPVGIFS-LEMTVDQLIHRIICS--RS 279 (472)
T ss_pred ccCc--HHHHHHhcCCCCCcEEEEEeCCCCChHH-HHHHHHHHHHHhc----CCeEEEEe-ccCCHHHHHHHHHHh--hc
Confidence 4444 344555443 446789999999996 4555555543221 22355553 233345555554332 22
Q ss_pred CceEEEE-ECCCCHHHHHH-------HHcCCCcEEEE-----CcHHHHHHHHccCCCCCCCcceEEEeCcccccc
Q 007481 97 DIRCCLV-VGGLSTKMQET-------ALRSMPDIVVA-----TPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 158 (602)
Q Consensus 97 ~i~v~~~-~g~~~~~~~~~-------~l~~~~~IvI~-----Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~ 158 (602)
++....+ .|..+. ..|. .+.. ..+.|- |...+...++.-. .-..+++||||=.+.|..
T Consensus 280 ~v~~~~i~~~~l~~-~e~~~~~~a~~~l~~-~~~~idd~~~~ti~~i~~~~r~~~--~~~~~~lvvIDyLql~~~ 350 (472)
T PRK06321 280 EVESKKISVGDLSG-RDFQRIVSVVNEMQE-HTLLIDDQPGLKITDLRARARRMK--ESYDIQFLIIDYLQLLSG 350 (472)
T ss_pred CCCHHHhhcCCCCH-HHHHHHHHHHHHHHc-CCEEEeCCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchHHcCC
Confidence 3332222 233332 2232 2333 345554 3444544443311 113478999999998753
No 479
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=88.06 E-value=1.6 Score=42.59 Aligned_cols=51 Identities=18% Similarity=-0.020 Sum_probs=28.1
Q ss_pred HHHHHhc-----CCCEEEEcCCCchHHHHHHHHHHHHHHcCC-CCCCCcEEEEEcChH
Q 007481 28 CIPLALT-----GRDICGSAITGSGKTAAFALPTLERLLYRP-KRIPAIRVLILTPTR 79 (602)
Q Consensus 28 ~i~~~l~-----g~dvii~a~TGSGKT~a~~l~il~~l~~~~-~~~~~~~vLiL~Ptr 79 (602)
.+..++. |.-+.+.+++|+|||..++ .++....... -......++++....
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~-~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCL-QLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHH-HHHHHhhcccccCCCcceEEEEecCC
Confidence 3455554 3456699999999997543 3333222211 000124578877654
No 480
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=88.02 E-value=2.6 Score=47.61 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=19.7
Q ss_pred cCCCEEEEcCCCchHHHHHHHHHHHHHHc
Q 007481 34 TGRDICGSAITGSGKTAAFALPTLERLLY 62 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a~~l~il~~l~~ 62 (602)
.|.-+.+.||||||||+. +-++.++..
T Consensus 354 ~Ge~vaiVG~sGsGKSTl--~~LL~r~~~ 380 (567)
T COG1132 354 PGEKVAIVGPSGSGKSTL--IKLLLRLYD 380 (567)
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhccCC
Confidence 467788999999999873 555555543
No 481
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=87.94 E-value=3.5 Score=46.53 Aligned_cols=74 Identities=20% Similarity=0.348 Sum_probs=55.6
Q ss_pred CcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHH----cCCCcEEEECcHHHHHHHHccCCCCCCC
Q 007481 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 144 (602)
Q Consensus 69 ~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l----~~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 144 (602)
+.++||.|+|+..|.++++.+... ++.+..++|+.+.......+ .+..+|+||| +.+.. .+++.+
T Consensus 257 ~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~ar--GIDip~ 325 (572)
T PRK04537 257 GARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAAR--GLHIDG 325 (572)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhhc--CCCccC
Confidence 447999999999999998888753 78899999998876544333 3567999999 33433 577888
Q ss_pred cceEEEeCc
Q 007481 145 LAVLILDEA 153 (602)
Q Consensus 145 l~llVlDEa 153 (602)
+++||.-+.
T Consensus 326 V~~VInyd~ 334 (572)
T PRK04537 326 VKYVYNYDL 334 (572)
T ss_pred CCEEEEcCC
Confidence 888876543
No 482
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=87.92 E-value=2.4 Score=42.45 Aligned_cols=19 Identities=26% Similarity=0.066 Sum_probs=16.5
Q ss_pred hcCCCEEEEcCCCchHHHH
Q 007481 33 LTGRDICGSAITGSGKTAA 51 (602)
Q Consensus 33 l~g~dvii~a~TGSGKT~a 51 (602)
-.|..+++.+|.|+|||..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3588999999999999963
No 483
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=87.90 E-value=3.6 Score=47.46 Aligned_cols=84 Identities=20% Similarity=0.266 Sum_probs=49.4
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHH
Q 007481 36 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~ 115 (602)
.++++.||||.|||.. .-.|...++... ..+|-....|-.+. ..+..+-..++--|+.-.|
T Consensus 522 gsFlF~GPTGVGKTEL--AkaLA~~Lfg~e-----~aliR~DMSEy~Ek--HsVSrLIGaPPGYVGyeeG---------- 582 (786)
T COG0542 522 GSFLFLGPTGVGKTEL--AKALAEALFGDE-----QALIRIDMSEYMEK--HSVSRLIGAPPGYVGYEEG---------- 582 (786)
T ss_pred eEEEeeCCCcccHHHH--HHHHHHHhcCCC-----ccceeechHHHHHH--HHHHHHhCCCCCCceeccc----------
Confidence 3688999999999974 445555565544 25777777666442 2333332222222222222
Q ss_pred HcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccc
Q 007481 116 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 156 (602)
Q Consensus 116 l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l 156 (602)
|.|-+.+++.+ +++|.|||+..-
T Consensus 583 ------------G~LTEaVRr~P------ySViLlDEIEKA 605 (786)
T COG0542 583 ------------GQLTEAVRRKP------YSVILLDEIEKA 605 (786)
T ss_pred ------------cchhHhhhcCC------CeEEEechhhhc
Confidence 33455566544 678999998863
No 484
>PF12846 AAA_10: AAA-like domain
Probab=87.90 E-value=1.7 Score=44.15 Aligned_cols=43 Identities=33% Similarity=0.414 Sum_probs=30.3
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 83 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~ 83 (602)
+.++++.|+||||||.... .++..+... +..++|+=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~~-----g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIRR-----GPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHc-----CCCEEEEcCCchHHH
Confidence 4689999999999997754 555555443 345788877766544
No 485
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=87.85 E-value=2.4 Score=46.07 Aligned_cols=111 Identities=19% Similarity=0.150 Sum_probs=54.3
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEE-ECCCCHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV-VGGLSTKMQE 113 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~-~g~~~~~~~~ 113 (602)
|.-++|.|+||+|||. |.+-++.++.... +..|++++.- .-..|+...+.... .++....+ .|..+.. ++
T Consensus 195 G~l~vi~g~pg~GKT~-~~l~~a~~~a~~~----g~~vl~~SlE-m~~~~i~~R~~~~~--~~v~~~~~~~g~l~~~-~~ 265 (434)
T TIGR00665 195 SDLIILAARPSMGKTA-FALNIAENAAIKE----GKPVAFFSLE-MSAEQLAMRMLSSE--SRVDSQKLRTGKLSDE-DW 265 (434)
T ss_pred CeEEEEEeCCCCChHH-HHHHHHHHHHHhC----CCeEEEEeCc-CCHHHHHHHHHHHh--cCCCHHHhccCCCCHH-HH
Confidence 3457799999999996 4455555543321 2246666433 33444444443322 23322222 2323322 22
Q ss_pred -------HHHcCCCcEEE-E----CcHHHHHHHHccCCCCCCCcceEEEeCccccc
Q 007481 114 -------TALRSMPDIVV-A----TPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 157 (602)
Q Consensus 114 -------~~l~~~~~IvI-~----Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~ 157 (602)
..+... .+.| . |+..+...++... .-..+++||||=.+.+.
T Consensus 266 ~~~~~a~~~l~~~-~l~i~d~~~~~~~~i~~~i~~~~--~~~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 266 EKLTSAAGKLSEA-PLYIDDTPGLTITELRAKARRLK--REHGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHHHHHHHhcC-CEEEECCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchHhcC
Confidence 122232 3444 2 3445554443211 01236799999988775
No 486
>CHL00176 ftsH cell division protein; Validated
Probab=87.75 E-value=8.5 Score=43.96 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
+.+++.||+|+|||..+
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57999999999999753
No 487
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=87.74 E-value=7 Score=41.36 Aligned_cols=110 Identities=19% Similarity=0.206 Sum_probs=57.2
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 114 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~ 114 (602)
.+.+.+.|+.|.|||.. .-++...+.... ..+ ++-.+...++++.+..+. |+...
T Consensus 62 ~~GlYl~G~vG~GKT~L--md~f~~~lp~~~---k~R----~HFh~Fm~~vh~~l~~~~-----------~~~~~----- 116 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML--MDLFYDSLPIKR---KRR----VHFHEFMLDVHSRLHQLR-----------GQDDP----- 116 (362)
T ss_pred CceEEEECCCCCchhHH--HHHHHHhCCccc---ccc----ccccHHHHHHHHHHHHHh-----------CCCcc-----
Confidence 36788999999999963 334333222111 111 133456666777776653 11110
Q ss_pred HHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHH-hCCCCcceeeeeccCChhH
Q 007481 115 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVR-LCPKRRQTMLFSATLTEDV 189 (602)
Q Consensus 115 ~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~-~~~~~~q~il~SAT~~~~~ 189 (602)
-..+.+.+.. ...+|.|||.|.- +-+-.-.+..++. .+....-+|..|.++|.++
T Consensus 117 ------------l~~va~~l~~-------~~~lLcfDEF~V~-DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 117 ------------LPQVADELAK-------ESRLLCFDEFQVT-DIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred ------------HHHHHHHHHh-------cCCEEEEeeeecc-chhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 0111222222 2458999999953 2221222233332 2345667788888888653
No 488
>PRK09087 hypothetical protein; Validated
Probab=87.72 E-value=1.9 Score=42.53 Aligned_cols=40 Identities=8% Similarity=0.066 Sum_probs=23.0
Q ss_pred eEEEeCccccccCCcHHHHHHHHHhCCC-CcceeeeeccCChh
Q 007481 147 VLILDEADRLLELGFSAEIHELVRLCPK-RRQTMLFSATLTED 188 (602)
Q Consensus 147 llVlDEah~l~~~gf~~~i~~i~~~~~~-~~q~il~SAT~~~~ 188 (602)
+|+||++|.+.. -...+..++..+.. ..++|+.|.+.|+.
T Consensus 90 ~l~iDDi~~~~~--~~~~lf~l~n~~~~~g~~ilits~~~p~~ 130 (226)
T PRK09087 90 PVLIEDIDAGGF--DETGLFHLINSVRQAGTSLLMTSRLWPSS 130 (226)
T ss_pred eEEEECCCCCCC--CHHHHHHHHHHHHhCCCeEEEECCCChHH
Confidence 799999997632 24455555555444 34444444455543
No 489
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=87.62 E-value=9.5 Score=42.02 Aligned_cols=97 Identities=19% Similarity=0.211 Sum_probs=70.8
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHH----cCC
Q 007481 44 TGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSM 119 (602)
Q Consensus 44 TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l----~~~ 119 (602)
.+.|++..-++.+.+.+... -.|.+||.+-+.+-|.|++..+. .+.++++..++|+.+.......+ .+.
T Consensus 366 vF~gse~~K~lA~rq~v~~g----~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~FR~g~ 438 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASG----FKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERFRIGK 438 (593)
T ss_pred eeeecchhHHHHHHHHHhcc----CCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHHhccC
Confidence 47777776656665555443 34569999999999999988886 45689999999997765443332 345
Q ss_pred CcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcc
Q 007481 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 154 (602)
Q Consensus 120 ~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah 154 (602)
-.|+||| +.+.+ .+++..+.+||-++.-
T Consensus 439 IwvLicT-----dll~R--GiDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 439 IWVLICT-----DLLAR--GIDFKGVNLVINYDFP 466 (593)
T ss_pred eeEEEeh-----hhhhc--cccccCcceEEecCCC
Confidence 6899999 55555 4888999999997654
No 490
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.53 E-value=1.7 Score=47.98 Aligned_cols=80 Identities=20% Similarity=0.279 Sum_probs=45.5
Q ss_pred CcceEEEeCcccccc-------CCcHHHHHHHHHh---CCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCC
Q 007481 144 DLAVLILDEADRLLE-------LGFSAEIHELVRL---CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPS 213 (602)
Q Consensus 144 ~l~llVlDEah~l~~-------~gf~~~i~~i~~~---~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~ 213 (602)
...+|+|||.|-|.. +.-...+.+++.. +....++..+.||--+++-+-+ +. +|.
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpA---iL------------RPG 668 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPA---IL------------RPG 668 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchh---hc------------CCC
Confidence 356899999998763 1233455555544 3455678888889766644322 11 222
Q ss_pred CceeeeeeechhhhhhHHHHHHHHhh
Q 007481 214 TLTEEVVRIRRMREVNQEAVLLSLCS 239 (602)
Q Consensus 214 ~l~~~~~~~~~~~~~~k~~~l~~l~~ 239 (602)
. ....+++.......+..+|..+..
T Consensus 669 R-lDk~LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 669 R-LDKLLYVGLPNAEERVAILKTITK 693 (802)
T ss_pred c-cCceeeecCCCHHHHHHHHHHHhc
Confidence 2 223344444455667777766554
No 491
>PRK08506 replicative DNA helicase; Provisional
Probab=87.45 E-value=2.7 Score=46.30 Aligned_cols=112 Identities=19% Similarity=0.132 Sum_probs=56.9
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEE-ECCCCHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV-VGGLSTKMQE 113 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~-~g~~~~~~~~ 113 (602)
|.-+++.|.||.|||.. .+-+...+... +..|+|++. -.-..|+...+-.. ..++....+ .|..+.. .|
T Consensus 192 G~LivIaarpg~GKT~f-al~ia~~~~~~-----g~~V~~fSl-EMs~~ql~~Rlla~--~s~v~~~~i~~~~l~~~-e~ 261 (472)
T PRK08506 192 GDLIIIAARPSMGKTTL-CLNMALKALNQ-----DKGVAFFSL-EMPAEQLMLRMLSA--KTSIPLQNLRTGDLDDD-EW 261 (472)
T ss_pred CceEEEEcCCCCChHHH-HHHHHHHHHhc-----CCcEEEEeC-cCCHHHHHHHHHHH--hcCCCHHHHhcCCCCHH-HH
Confidence 34577899999999964 45555555432 224666643 34455665554332 223322222 2333322 22
Q ss_pred H-------HHcCCCcEEEE-----CcHHHHHHHHccCCCCCCCcceEEEeCcccccc
Q 007481 114 T-------ALRSMPDIVVA-----TPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 158 (602)
Q Consensus 114 ~-------~l~~~~~IvI~-----Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~ 158 (602)
. .+... .+.|- |+..+...++.... ....+++||||=.+.|..
T Consensus 262 ~~~~~a~~~l~~~-~l~I~d~~~~ti~~I~~~~r~l~~-~~~~~~lvvIDyLql~~~ 316 (472)
T PRK08506 262 ERLSDACDELSKK-KLFVYDSGYVNIHQVRAQLRKLKS-QHPEIGLAVIDYLQLMSG 316 (472)
T ss_pred HHHHHHHHHHHcC-CeEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEcChhhccC
Confidence 2 12233 35442 34455444443110 112478999999987753
No 492
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=87.41 E-value=4.2 Score=39.17 Aligned_cols=38 Identities=18% Similarity=0.079 Sum_probs=23.8
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcCh
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 78 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Pt 78 (602)
|.-+.+.+|+|||||...+ -++...... +.+++++.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~-~~~~~~~~~-----g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICM-ILAVNAARQ-----GKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHH-HHHHHHHhC-----CCeEEEEECC
Confidence 3456699999999997643 333333222 2357777664
No 493
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=87.38 E-value=7 Score=43.33 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=14.5
Q ss_pred CCEEEEcCCCchHHHH
Q 007481 36 RDICGSAITGSGKTAA 51 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a 51 (602)
+.+++.+|+|+|||..
T Consensus 89 ~giLL~GppGtGKT~l 104 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLL 104 (495)
T ss_pred CcEEEECCCCCCHHHH
Confidence 5799999999999975
No 494
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=87.26 E-value=3 Score=45.21 Aligned_cols=113 Identities=19% Similarity=0.183 Sum_probs=54.0
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEE-ECCCCHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV-VGGLSTKMQE 113 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~-~g~~~~~~~~ 113 (602)
|.-+++.|+||+|||.. .+-+...+... .+..|+|++. -.-..|+...+-. ...++....+ .|..+.. .+
T Consensus 194 g~liviag~pg~GKT~~-al~ia~~~a~~----~g~~v~~fSl-Em~~~~l~~Rl~~--~~~~v~~~~~~~~~l~~~-~~ 264 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTL-ALNIAENVALR----EGKPVLFFSL-EMSAEQLGERLLA--SKSGINTGNIRTGRFNDS-DF 264 (421)
T ss_pred CceEEEEeCCCCCHHHH-HHHHHHHHHHh----CCCcEEEEEC-CCCHHHHHHHHHH--HHcCCCHHHHhcCCCCHH-HH
Confidence 45677999999999964 45555444311 1234777762 2233444333322 1223322222 2333322 22
Q ss_pred HH-------HcCCCcEEEE-----CcHHHHHHHHccCCCCCCCcceEEEeCcccccc
Q 007481 114 TA-------LRSMPDIVVA-----TPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 158 (602)
Q Consensus 114 ~~-------l~~~~~IvI~-----Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~ 158 (602)
.. +.. .+++|. |+..+...++... .....+++||||=.|.|..
T Consensus 265 ~~~~~~~~~l~~-~~l~i~d~~~~t~~~i~~~~r~~~-~~~~~~~lvvIDyLql~~~ 319 (421)
T TIGR03600 265 NRLLNAVDRLSE-KDLYIDDTGGLTVAQIRSIARRIK-RKKGGLDLIVVDYIQLMAP 319 (421)
T ss_pred HHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHH-HhcCCCCEEEEecccccCC
Confidence 21 222 345553 3334444333210 0112478999999887754
No 495
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.17 E-value=3.4 Score=43.28 Aligned_cols=153 Identities=15% Similarity=0.200 Sum_probs=86.4
Q ss_pred CCCCCcHHHHHHHHHHhc-------------C-CCEE-EEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 17 GYSKPTPIQAACIPLALT-------------G-RDIC-GSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 17 g~~~pt~~Q~~~i~~~l~-------------g-~dvi-i~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
|+..-+-+|..+...+.. + .+|| +.+-.|+|||.. ++=+..++.+ .+.++.++|--.--
T Consensus 68 G~nk~r~i~~~vf~eL~kl~dp~~~~~~~~K~kpsVimfVGLqG~GKTTt--c~KlA~y~kk----kG~K~~LvcaDTFR 141 (483)
T KOG0780|consen 68 GVNKRRIIQKAVFDELVKLLDPGKSALQPKKGKPSVIMFVGLQGSGKTTT--CTKLAYYYKK----KGYKVALVCADTFR 141 (483)
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCCcccccccCCCcEEEEEeccCCCccee--HHHHHHHHHh----cCCceeEEeecccc
Confidence 555556677777665542 1 2444 799999999975 3333333333 23345555433222
Q ss_pred HHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccc-cCC
Q 007481 82 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELG 160 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~-~~g 160 (602)
|- .+++++.++....+.+..-+..... +.|+. .-+. .+.-+++++||+|=+.+.. +.+
T Consensus 142 ag-AfDQLkqnA~k~~iP~ygsyte~dp------------v~ia~-----egv~---~fKke~fdvIIvDTSGRh~qe~s 200 (483)
T KOG0780|consen 142 AG-AFDQLKQNATKARVPFYGSYTEADP------------VKIAS-----EGVD---RFKKENFDVIIVDTSGRHKQEAS 200 (483)
T ss_pred cc-hHHHHHHHhHhhCCeeEecccccch------------HHHHH-----HHHH---HHHhcCCcEEEEeCCCchhhhHH
Confidence 11 3455566555555554432222111 11111 1111 1233567899999998765 344
Q ss_pred cHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHh
Q 007481 161 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLS 196 (602)
Q Consensus 161 f~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~ 196 (602)
..+++..+...+.++.-++.+-|++.......+..+
T Consensus 201 LfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aF 236 (483)
T KOG0780|consen 201 LFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAF 236 (483)
T ss_pred HHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHH
Confidence 567788888888888778888999887766655444
No 496
>PRK12608 transcription termination factor Rho; Provisional
Probab=87.16 E-value=2.7 Score=44.35 Aligned_cols=39 Identities=15% Similarity=0.061 Sum_probs=27.8
Q ss_pred HHHHHHHHHHh---cCCCEEEEcCCCchHHHHHHHHHHHHHHc
Q 007481 23 PIQAACIPLAL---TGRDICGSAITGSGKTAAFALPTLERLLY 62 (602)
Q Consensus 23 ~~Q~~~i~~~l---~g~dvii~a~TGSGKT~a~~l~il~~l~~ 62 (602)
++-.++|..++ .|+.++|.||.|+|||.. +.-++..+..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTL-l~~la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVL-LQQIAAAVAA 159 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 45556777766 478999999999999975 3344555443
No 497
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=87.16 E-value=13 Score=35.39 Aligned_cols=72 Identities=17% Similarity=0.215 Sum_probs=51.9
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc-----c-ccccCcCC
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----A-ARGLDIIG 311 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~----~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~-----~-~~GlDip~ 311 (602)
.+.++||.+++...+......+.. .++.+..++|+.+..+....+. +..+|+|+|.. + ..-+++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 456899999999998887665544 3678888999988766544333 67889999952 2 22256778
Q ss_pred ccEEEE
Q 007481 312 VQTVIN 317 (602)
Q Consensus 312 v~~VI~ 317 (602)
++++|.
T Consensus 144 l~~lIv 149 (203)
T cd00268 144 VKYLVL 149 (203)
T ss_pred CCEEEE
Confidence 888774
No 498
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=87.13 E-value=3.7 Score=40.81 Aligned_cols=86 Identities=12% Similarity=0.224 Sum_probs=59.9
Q ss_pred CCceeeccCCCCHHHHHHHHHHHhcCC----ceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhh--cccCCCc
Q 007481 267 ALKAAELHGNLTQAQRLEALELFRKQH----VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGR--TARAGRE 340 (602)
Q Consensus 267 g~~~~~lhg~~~~~eR~~il~~F~~g~----~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGR--a~R~g~~ 340 (602)
++.+..++++.+... -+|.++. ..|+|+=+.++|||-+++..+.....-+.+..++.|| || .-|.|-.
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~Qm-gRwFGYR~gY~ 183 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQM-GRWFGYRPGYE 183 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHH-hhcccCCcccc
Confidence 466666665544322 3344333 7899999999999999999999999888888888887 33 2355667
Q ss_pred ceEEEEEecCcHHHHHHH
Q 007481 341 GYAVTFVTDNDRSLLKAI 358 (602)
Q Consensus 341 g~~i~l~~~~d~~~l~~i 358 (602)
+.|-++.++.-...+..|
T Consensus 184 dl~Ri~~~~~l~~~f~~i 201 (239)
T PF10593_consen 184 DLCRIYMPEELYDWFRHI 201 (239)
T ss_pred cceEEecCHHHHHHHHHH
Confidence 777777766544444444
No 499
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=87.11 E-value=0.9 Score=34.84 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=18.9
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHc
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLY 62 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~ 62 (602)
|...++.+++|||||.. +-++..++.
T Consensus 23 g~~tli~G~nGsGKSTl--lDAi~~~L~ 48 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTL--LDAIQTVLY 48 (62)
T ss_pred CcEEEEECCCCCCHHHH--HHHHHHHHc
Confidence 45688999999999974 445544443
No 500
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=87.01 E-value=0.9 Score=43.72 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=23.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 38 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 38 vii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+++++|||||||.. +..++..+... ...+++++-...++
T Consensus 4 ilI~GptGSGKTTl-l~~ll~~~~~~----~~~~i~t~e~~~E~ 42 (198)
T cd01131 4 VLVTGPTGSGKSTT-LAAMIDYINKN----KTHHILTIEDPIEF 42 (198)
T ss_pred EEEECCCCCCHHHH-HHHHHHHhhhc----CCcEEEEEcCCccc
Confidence 67999999999975 34445444322 12356666554443
Done!