Query 007481
Match_columns 602
No_of_seqs 384 out of 3100
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 02:46:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007481.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007481hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 3.8E-60 1.3E-64 512.7 44.2 355 2-361 60-419 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 1.7E-57 5.9E-62 487.6 38.5 364 2-371 41-404 (410)
3 2i4i_A ATP-dependent RNA helic 100.0 1E-56 3.5E-61 482.2 40.2 357 2-362 19-395 (417)
4 1s2m_A Putative ATP-dependent 100.0 5.4E-55 1.8E-59 466.5 42.3 360 2-369 25-384 (400)
5 3eiq_A Eukaryotic initiation f 100.0 1.2E-55 4.1E-60 473.2 36.5 362 2-369 44-406 (414)
6 1xti_A Probable ATP-dependent 100.0 4.8E-54 1.6E-58 457.3 41.9 360 2-368 12-376 (391)
7 3fht_A ATP-dependent RNA helic 100.0 1.8E-54 6.1E-59 463.5 38.5 360 2-369 29-399 (412)
8 3sqw_A ATP-dependent RNA helic 100.0 1.4E-54 4.9E-59 485.9 39.0 366 4-369 27-417 (579)
9 3pey_A ATP-dependent RNA helic 100.0 7.5E-54 2.6E-58 455.5 41.8 353 1-363 8-370 (395)
10 3i5x_A ATP-dependent RNA helic 100.0 2.7E-54 9.2E-59 482.2 37.5 365 4-368 78-467 (563)
11 1hv8_A Putative ATP-dependent 100.0 4E-53 1.4E-57 445.4 42.2 353 2-368 10-363 (367)
12 1fuu_A Yeast initiation factor 100.0 4.2E-55 1.4E-59 465.6 22.8 359 2-367 25-383 (394)
13 3fmp_B ATP-dependent RNA helic 100.0 1.6E-55 5.4E-60 482.6 18.5 358 2-367 96-464 (479)
14 2z0m_A 337AA long hypothetical 100.0 8.5E-52 2.9E-56 430.5 37.7 334 5-362 1-334 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 4.4E-50 1.5E-54 447.7 35.6 341 2-359 25-383 (591)
16 3oiy_A Reverse gyrase helicase 100.0 3.2E-50 1.1E-54 432.2 30.7 342 8-379 9-394 (414)
17 3fho_A ATP-dependent RNA helic 100.0 1.4E-50 4.9E-55 446.1 20.0 356 3-368 124-489 (508)
18 1oyw_A RECQ helicase, ATP-depe 100.0 2.9E-48 9.9E-53 428.3 33.1 338 1-361 5-354 (523)
19 4a2p_A RIG-I, retinoic acid in 100.0 3.3E-47 1.1E-51 423.3 29.9 337 16-355 3-513 (556)
20 2ykg_A Probable ATP-dependent 100.0 7E-47 2.4E-51 432.7 28.5 347 9-358 2-524 (696)
21 1tf5_A Preprotein translocase 100.0 1.8E-45 6.1E-50 411.9 36.3 322 15-352 79-547 (844)
22 3tbk_A RIG-I helicase domain; 100.0 2.2E-46 7.6E-51 416.1 27.5 337 19-358 3-515 (555)
23 4a2q_A RIG-I, retinoic acid in 100.0 1.1E-45 3.8E-50 428.2 30.5 339 14-355 242-754 (797)
24 4ddu_A Reverse gyrase; topoiso 100.0 1.4E-45 4.7E-50 435.9 31.6 322 14-363 73-503 (1104)
25 3l9o_A ATP-dependent RNA helic 100.0 6.2E-45 2.1E-49 430.5 31.6 339 3-361 167-609 (1108)
26 4a2w_A RIG-I, retinoic acid in 100.0 1.7E-44 5.7E-49 423.2 28.0 339 14-355 242-754 (936)
27 1gku_B Reverse gyrase, TOP-RG; 100.0 7.5E-45 2.5E-49 429.8 24.8 321 14-364 52-468 (1054)
28 2zj8_A DNA helicase, putative 100.0 4.4E-44 1.5E-48 410.6 29.5 333 2-352 5-389 (720)
29 2va8_A SSO2462, SKI2-type heli 100.0 1.3E-43 4.4E-48 406.7 32.9 331 2-351 12-409 (715)
30 1wp9_A ATP-dependent RNA helic 100.0 4.4E-43 1.5E-47 381.5 34.5 326 20-354 9-479 (494)
31 2fsf_A Preprotein translocase 100.0 1.6E-43 5.3E-48 395.1 29.8 326 15-353 70-586 (853)
32 2p6r_A Afuhel308 helicase; pro 100.0 5.1E-44 1.7E-48 409.0 26.0 332 2-352 5-390 (702)
33 2xgj_A ATP-dependent RNA helic 100.0 2E-42 7E-47 405.7 36.8 327 13-360 80-510 (1010)
34 4gl2_A Interferon-induced heli 100.0 3.6E-44 1.2E-48 410.4 20.6 328 19-352 6-521 (699)
35 1nkt_A Preprotein translocase 100.0 3.1E-42 1E-46 385.0 33.9 327 15-354 107-621 (922)
36 4a4z_A Antiviral helicase SKI2 100.0 2.5E-41 8.5E-46 396.5 35.8 328 15-362 35-506 (997)
37 1gm5_A RECG; helicase, replica 100.0 3E-41 1E-45 384.5 25.8 321 8-353 357-700 (780)
38 4f92_B U5 small nuclear ribonu 100.0 1.7E-40 6E-45 405.3 31.9 346 5-359 911-1317(1724)
39 2eyq_A TRCF, transcription-rep 100.0 1.6E-39 5.5E-44 386.4 35.6 322 3-350 586-922 (1151)
40 2oca_A DAR protein, ATP-depend 100.0 2.4E-40 8.3E-45 364.9 24.9 313 19-348 112-453 (510)
41 2whx_A Serine protease/ntpase/ 100.0 5.7E-42 2E-46 383.4 8.6 314 3-362 155-493 (618)
42 2fwr_A DNA repair protein RAD2 100.0 4.1E-40 1.4E-44 359.7 21.8 297 20-353 93-457 (472)
43 4f92_B U5 small nuclear ribonu 100.0 5.7E-40 2E-44 400.8 25.2 339 17-360 76-483 (1724)
44 2jlq_A Serine protease subunit 100.0 2.4E-40 8.3E-45 359.0 14.9 287 17-349 1-310 (451)
45 3o8b_A HCV NS3 protease/helica 100.0 5.9E-39 2E-43 356.5 13.3 278 21-354 218-518 (666)
46 2xau_A PRE-mRNA-splicing facto 100.0 1.1E-37 3.9E-42 357.0 22.0 332 2-352 76-445 (773)
47 2wv9_A Flavivirin protease NS2 100.0 5.2E-39 1.8E-43 361.8 10.2 306 12-362 202-548 (673)
48 3dmq_A RNA polymerase-associat 100.0 2E-36 6.7E-41 355.4 25.3 322 19-348 152-611 (968)
49 3fe2_A Probable ATP-dependent 100.0 5.9E-36 2E-40 297.7 24.7 205 2-207 33-239 (242)
50 1yks_A Genome polyprotein [con 100.0 1.4E-37 4.8E-42 336.0 13.4 280 31-362 4-314 (440)
51 2z83_A Helicase/nucleoside tri 100.0 8.1E-38 2.8E-42 339.8 10.7 272 30-350 16-313 (459)
52 3h1t_A Type I site-specific re 100.0 3.9E-36 1.3E-40 337.2 22.0 305 19-339 177-545 (590)
53 3ber_A Probable ATP-dependent 100.0 3.7E-35 1.2E-39 293.3 25.6 201 2-205 47-247 (249)
54 2v6i_A RNA helicase; membrane, 100.0 1.1E-35 3.8E-40 320.4 21.9 269 34-347 1-288 (431)
55 1vec_A ATP-dependent RNA helic 100.0 2E-34 6.8E-39 279.0 25.0 198 2-203 7-205 (206)
56 3iuy_A Probable ATP-dependent 100.0 7.4E-35 2.5E-39 286.9 21.9 200 3-204 25-227 (228)
57 1z63_A Helicase of the SNF2/RA 100.0 3.1E-34 1.1E-38 315.3 29.2 334 20-373 37-476 (500)
58 3fmo_B ATP-dependent RNA helic 100.0 3.7E-35 1.3E-39 301.2 20.2 199 2-206 96-298 (300)
59 1wrb_A DJVLGB; RNA helicase, D 100.0 6.1E-35 2.1E-39 292.2 20.6 213 2-215 27-249 (253)
60 2pl3_A Probable ATP-dependent 100.0 2.3E-34 7.9E-39 284.9 24.5 204 2-206 29-233 (236)
61 3ly5_A ATP-dependent RNA helic 100.0 1.7E-34 5.8E-39 290.7 23.0 197 5-201 61-258 (262)
62 2gxq_A Heat resistant RNA depe 100.0 3.6E-34 1.2E-38 277.2 24.1 201 2-205 5-205 (207)
63 1q0u_A Bstdead; DEAD protein, 100.0 1.3E-34 4.5E-39 283.4 20.7 201 2-206 8-212 (219)
64 3bor_A Human initiation factor 100.0 2.1E-34 7.3E-39 285.5 21.9 201 2-206 34-235 (237)
65 3rc3_A ATP-dependent RNA helic 100.0 4.3E-34 1.5E-38 321.0 26.9 293 30-368 150-462 (677)
66 2oxc_A Probable ATP-dependent 100.0 4.2E-34 1.4E-38 282.1 23.0 199 2-205 28-228 (230)
67 1qde_A EIF4A, translation init 100.0 8.5E-34 2.9E-38 278.3 22.3 201 2-207 18-218 (224)
68 1t6n_A Probable ATP-dependent 100.0 3.1E-33 1E-37 273.7 23.0 199 2-204 18-219 (220)
69 3jux_A Protein translocase sub 100.0 3.8E-31 1.3E-35 289.7 40.0 321 15-354 71-591 (822)
70 3dkp_A Probable ATP-dependent 100.0 1.7E-33 5.8E-38 280.3 18.6 203 3-207 34-242 (245)
71 1z3i_X Similar to RAD54-like; 100.0 2.3E-31 8E-36 300.5 35.5 325 20-353 55-531 (644)
72 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 3E-32 1E-36 318.0 29.0 327 19-361 270-719 (1038)
73 3mwy_W Chromo domain-containin 100.0 6.6E-32 2.3E-36 312.3 28.1 330 19-360 235-696 (800)
74 1c4o_A DNA nucleotide excision 100.0 9.9E-33 3.4E-37 311.7 20.2 259 174-451 379-644 (664)
75 2d7d_A Uvrabc system protein B 100.0 1.4E-31 4.6E-36 302.2 18.5 260 174-450 385-658 (661)
76 2ipc_A Preprotein translocase 100.0 2.6E-26 8.8E-31 255.9 44.3 132 15-157 75-215 (997)
77 2hjv_A ATP-dependent RNA helic 99.9 8.2E-26 2.8E-30 210.5 19.2 154 211-367 6-159 (163)
78 2rb4_A ATP-dependent RNA helic 99.9 2.2E-25 7.6E-30 210.1 18.3 157 211-369 4-166 (175)
79 2p6n_A ATP-dependent RNA helic 99.9 1.8E-25 6.1E-30 213.7 17.6 166 193-362 8-174 (191)
80 1t5i_A C_terminal domain of A 99.9 2.4E-25 8.2E-30 209.3 17.8 154 212-368 3-157 (172)
81 3eaq_A Heat resistant RNA depe 99.9 7.4E-25 2.5E-29 213.1 20.8 146 227-372 15-160 (212)
82 1fuk_A Eukaryotic initiation f 99.9 5.9E-25 2E-29 205.1 17.0 154 214-369 3-156 (165)
83 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.3E-24 4.3E-29 206.8 15.2 150 210-362 15-165 (185)
84 3b6e_A Interferon-induced heli 99.9 4E-25 1.4E-29 214.5 11.2 170 14-184 27-216 (216)
85 3i32_A Heat resistant RNA depe 99.9 6.8E-24 2.3E-28 216.4 19.9 155 215-372 3-157 (300)
86 2vl7_A XPD; helicase, unknown 99.9 3.8E-23 1.3E-27 228.6 23.2 303 16-349 4-520 (540)
87 2yjt_D ATP-dependent RNA helic 99.8 1.9E-25 6.5E-30 209.5 0.0 144 228-371 15-158 (170)
88 3crv_A XPD/RAD3 related DNA he 99.9 4.5E-21 1.5E-25 212.7 29.2 309 17-350 1-531 (551)
89 3llm_A ATP-dependent RNA helic 99.9 4E-22 1.4E-26 196.9 14.1 172 17-201 58-232 (235)
90 1rif_A DAR protein, DNA helica 99.9 2.1E-22 7.2E-27 204.5 10.1 156 20-191 113-268 (282)
91 2fz4_A DNA repair protein RAD2 99.8 1.8E-19 6E-24 178.1 16.2 138 20-188 93-231 (237)
92 4a15_A XPD helicase, ATP-depen 99.8 5.8E-18 2E-22 189.5 25.7 317 20-349 3-583 (620)
93 1z5z_A Helicase of the SNF2/RA 99.8 9.1E-19 3.1E-23 176.2 15.1 126 228-353 95-227 (271)
94 1w36_D RECD, exodeoxyribonucle 98.9 2.5E-09 8.5E-14 119.5 9.9 146 22-184 151-298 (608)
95 3upu_A ATP-dependent DNA helic 98.2 4.1E-06 1.4E-10 90.3 11.8 75 10-89 15-94 (459)
96 4b3f_X DNA-binding protein smu 98.2 0.00017 5.9E-09 81.0 23.1 67 19-91 188-255 (646)
97 3e1s_A Exodeoxyribonuclease V, 98.1 6.1E-06 2.1E-10 91.2 10.8 121 20-182 189-313 (574)
98 3hgt_A HDA1 complex subunit 3; 98.1 2E-05 6.7E-10 79.7 13.3 125 227-356 107-243 (328)
99 2gk6_A Regulator of nonsense t 98.1 1.6E-05 5.5E-10 89.0 13.2 70 18-92 178-247 (624)
100 3lfu_A DNA helicase II; SF1 he 98.0 0.00025 8.5E-09 79.6 21.0 72 19-94 8-79 (647)
101 2wjy_A Regulator of nonsense t 98.0 4.1E-05 1.4E-09 87.7 14.0 69 18-91 354-422 (800)
102 2xzl_A ATP-dependent helicase 98.0 5E-05 1.7E-09 87.1 14.2 70 18-92 358-427 (802)
103 2o0j_A Terminase, DNA packagin 97.2 0.0035 1.2E-07 65.3 14.4 72 20-95 163-234 (385)
104 3cpe_A Terminase, DNA packagin 97.0 0.0051 1.7E-07 68.2 14.1 73 20-96 163-235 (592)
105 3ec2_A DNA replication protein 97.0 0.0031 1.1E-07 58.1 10.4 30 22-51 16-54 (180)
106 3vkw_A Replicase large subunit 96.6 0.0049 1.7E-07 65.1 9.3 105 37-182 163-267 (446)
107 1l8q_A Chromosomal replication 96.5 0.014 4.9E-07 59.1 11.4 24 36-60 38-61 (324)
108 2orw_A Thymidine kinase; TMTK, 96.4 0.0091 3.1E-07 55.5 8.8 39 35-79 3-41 (184)
109 3te6_A Regulatory protein SIR3 96.4 0.027 9.1E-07 57.1 12.9 27 35-62 45-71 (318)
110 2b8t_A Thymidine kinase; deoxy 96.3 0.0083 2.8E-07 57.6 7.7 91 35-157 12-102 (223)
111 2w58_A DNAI, primosome compone 96.3 0.032 1.1E-06 52.1 11.7 25 36-61 55-79 (202)
112 2kjq_A DNAA-related protein; s 96.2 0.0016 5.4E-08 58.5 2.2 18 34-51 35-52 (149)
113 1xx6_A Thymidine kinase; NESG, 96.0 0.011 3.8E-07 55.3 7.1 39 35-79 8-46 (191)
114 3u4q_A ATP-dependent helicase/ 96.0 0.0088 3E-07 72.0 8.0 109 19-135 9-117 (1232)
115 1d2n_A N-ethylmaleimide-sensit 95.9 0.034 1.2E-06 54.7 10.6 17 36-52 65-81 (272)
116 1uaa_A REP helicase, protein ( 95.9 0.0074 2.5E-07 67.9 6.3 81 20-104 2-85 (673)
117 1a5t_A Delta prime, HOLB; zinc 95.9 0.014 4.6E-07 59.8 7.8 40 21-61 3-49 (334)
118 3kl4_A SRP54, signal recogniti 95.9 0.028 9.6E-07 59.4 10.1 128 37-194 99-232 (433)
119 1pjr_A PCRA; DNA repair, DNA r 95.9 0.015 5.2E-07 66.0 8.6 82 19-104 10-93 (724)
120 2chg_A Replication factor C sm 95.7 0.087 3E-06 49.2 12.0 41 143-184 101-141 (226)
121 2z4s_A Chromosomal replication 95.5 0.064 2.2E-06 57.0 11.2 17 36-52 131-147 (440)
122 3dm5_A SRP54, signal recogniti 95.4 0.18 6.3E-06 53.2 14.1 125 37-194 102-233 (443)
123 2p65_A Hypothetical protein PF 95.3 0.099 3.4E-06 47.4 10.6 25 35-60 43-67 (187)
124 2v1u_A Cell division control p 95.3 0.055 1.9E-06 55.7 9.8 17 35-51 44-60 (387)
125 3n70_A Transport activator; si 95.1 0.093 3.2E-06 46.3 9.4 20 33-52 22-41 (145)
126 2j9r_A Thymidine kinase; TK1, 95.1 0.019 6.3E-07 54.6 4.7 40 35-80 28-67 (214)
127 2qby_B CDC6 homolog 3, cell di 95.1 0.055 1.9E-06 55.8 8.9 24 35-59 45-68 (384)
128 2zpa_A Uncharacterized protein 95.0 0.018 6.3E-07 63.8 5.3 115 20-188 175-291 (671)
129 1g5t_A COB(I)alamin adenosyltr 95.0 0.081 2.8E-06 49.4 8.8 136 36-194 29-172 (196)
130 3syl_A Protein CBBX; photosynt 94.9 0.042 1.5E-06 55.0 7.2 17 36-52 68-84 (309)
131 1w4r_A Thymidine kinase; type 94.9 0.044 1.5E-06 51.1 6.6 38 35-78 20-57 (195)
132 2qgz_A Helicase loader, putati 94.8 0.098 3.4E-06 52.7 9.6 26 35-61 152-177 (308)
133 3u61_B DNA polymerase accessor 94.7 0.05 1.7E-06 55.0 7.3 40 144-183 105-144 (324)
134 3e2i_A Thymidine kinase; Zn-bi 94.7 0.057 1.9E-06 51.2 7.0 40 35-80 28-67 (219)
135 2orv_A Thymidine kinase; TP4A 94.6 0.078 2.7E-06 50.8 7.8 39 35-79 19-57 (234)
136 1jbk_A CLPB protein; beta barr 94.6 0.65 2.2E-05 41.8 14.1 24 36-60 44-67 (195)
137 2r2a_A Uncharacterized protein 94.5 0.014 4.8E-07 55.0 2.3 40 145-184 88-132 (199)
138 1sxj_E Activator 1 40 kDa subu 94.4 0.12 4E-06 52.8 9.3 43 143-186 133-175 (354)
139 3bos_A Putative DNA replicatio 94.4 0.037 1.3E-06 52.8 5.1 18 35-52 52-69 (242)
140 1gm5_A RECG; helicase, replica 94.0 0.12 4.1E-06 58.8 9.1 79 243-321 417-500 (780)
141 1fnn_A CDC6P, cell division co 93.9 0.18 6.1E-06 51.9 9.6 15 37-51 46-60 (389)
142 1njg_A DNA polymerase III subu 93.8 0.32 1.1E-05 45.8 10.6 39 144-183 126-164 (250)
143 3eie_A Vacuolar protein sortin 93.7 0.2 7E-06 50.5 9.4 17 36-52 52-68 (322)
144 2qby_A CDC6 homolog 1, cell di 93.5 0.27 9.1E-06 50.3 9.9 17 35-51 45-61 (386)
145 1iqp_A RFCS; clamp loader, ext 93.3 0.28 9.6E-06 49.0 9.5 40 143-183 109-148 (327)
146 3oiy_A Reverse gyrase helicase 93.3 0.3 1E-05 50.9 10.1 78 241-318 62-146 (414)
147 1sxj_D Activator 1 41 kDa subu 93.3 0.11 3.9E-06 52.7 6.6 40 143-183 132-171 (353)
148 3pfi_A Holliday junction ATP-d 93.1 0.27 9.3E-06 49.7 9.2 17 36-52 56-72 (338)
149 3h4m_A Proteasome-activating n 93.0 0.43 1.5E-05 46.8 10.3 18 35-52 51-68 (285)
150 2gno_A DNA polymerase III, gam 92.9 0.31 1.1E-05 48.9 9.0 40 142-182 80-119 (305)
151 2qp9_X Vacuolar protein sortin 92.7 0.17 5.9E-06 51.9 7.0 17 36-52 85-101 (355)
152 1jr3_A DNA polymerase III subu 92.2 0.44 1.5E-05 48.6 9.5 40 142-182 117-156 (373)
153 3hjh_A Transcription-repair-co 91.8 0.59 2E-05 50.0 10.1 87 34-132 13-115 (483)
154 2qz4_A Paraplegin; AAA+, SPG7, 91.8 1.1 3.8E-05 43.1 11.4 18 35-52 39-56 (262)
155 3cf0_A Transitional endoplasmi 91.8 0.45 1.5E-05 47.5 8.6 18 35-52 49-66 (301)
156 1sxj_C Activator 1 40 kDa subu 91.7 0.27 9.3E-06 49.9 7.0 39 143-182 109-147 (340)
157 1sxj_B Activator 1 37 kDa subu 91.6 0.32 1.1E-05 48.5 7.3 39 144-183 107-145 (323)
158 3vfd_A Spastin; ATPase, microt 91.6 0.31 1.1E-05 50.6 7.4 18 35-52 148-165 (389)
159 1hqc_A RUVB; extended AAA-ATPa 91.3 0.35 1.2E-05 48.4 7.3 17 36-52 39-55 (324)
160 4b4t_J 26S protease regulatory 91.1 1.3 4.6E-05 45.9 11.5 17 36-52 183-199 (405)
161 1xwi_A SKD1 protein; VPS4B, AA 91.1 0.18 6.1E-06 51.1 4.8 17 36-52 46-62 (322)
162 2p6n_A ATP-dependent RNA helic 90.8 2.2 7.4E-05 39.3 11.7 72 70-152 55-130 (191)
163 2dr3_A UPF0273 protein PH0284; 90.7 0.71 2.4E-05 43.9 8.6 49 35-90 23-71 (247)
164 2chq_A Replication factor C sm 90.5 0.11 3.9E-06 51.8 2.7 16 37-52 40-55 (319)
165 1n0w_A DNA repair protein RAD5 90.4 0.8 2.8E-05 43.5 8.6 24 29-52 13-41 (243)
166 2fna_A Conserved hypothetical 90.3 9 0.00031 38.1 16.9 54 126-185 123-179 (357)
167 2r6a_A DNAB helicase, replicat 90.3 1.2 4E-05 47.3 10.5 38 35-77 203-240 (454)
168 4b4t_L 26S protease subunit RP 90.2 0.26 8.7E-06 52.0 5.2 17 36-52 216-232 (437)
169 3pvs_A Replication-associated 90.2 0.3 1E-05 51.8 5.7 17 36-52 51-67 (447)
170 2zan_A Vacuolar protein sortin 90.1 0.77 2.6E-05 48.6 8.9 17 36-52 168-184 (444)
171 2w0m_A SSO2452; RECA, SSPF, un 89.9 0.72 2.5E-05 43.3 7.8 18 35-52 23-40 (235)
172 2eyq_A TRCF, transcription-rep 89.8 1.2 4.3E-05 52.9 11.2 76 242-317 651-731 (1151)
173 4ddu_A Reverse gyrase; topoiso 89.7 0.66 2.3E-05 54.9 8.7 78 241-319 119-204 (1104)
174 3hu3_A Transitional endoplasmi 89.5 1.1 3.9E-05 47.9 9.7 42 146-187 299-350 (489)
175 2ehv_A Hypothetical protein PH 89.4 0.32 1.1E-05 46.6 4.9 43 144-186 135-182 (251)
176 2hjv_A ATP-dependent RNA helic 89.4 1.3 4.3E-05 39.6 8.5 90 44-152 18-111 (163)
177 1w5s_A Origin recognition comp 89.3 0.43 1.5E-05 49.4 6.1 16 36-51 51-68 (412)
178 2rb4_A ATP-dependent RNA helic 89.2 1.4 4.8E-05 39.8 8.8 73 69-152 34-110 (175)
179 4b4t_K 26S protease regulatory 89.0 2.5 8.4E-05 44.4 11.6 17 36-52 207-223 (428)
180 1oyw_A RECQ helicase, ATP-depe 89.0 2.5 8.7E-05 45.6 12.1 121 243-363 65-197 (523)
181 1fuk_A Eukaryotic initiation f 88.8 2.7 9.4E-05 37.3 10.5 87 47-152 16-106 (165)
182 4b4t_I 26S protease regulatory 88.8 0.42 1.4E-05 50.1 5.4 17 36-52 217-233 (437)
183 4b4t_M 26S protease regulatory 88.6 1.9 6.6E-05 45.3 10.4 17 36-52 216-232 (434)
184 2v1x_A ATP-dependent DNA helic 88.6 1.3 4.5E-05 48.6 9.7 120 243-363 84-223 (591)
185 2q6t_A DNAB replication FORK h 88.2 0.64 2.2E-05 49.2 6.6 119 29-159 190-325 (444)
186 1t6n_A Probable ATP-dependent 88.2 2 6.8E-05 40.1 9.5 72 243-317 82-164 (220)
187 3pxi_A Negative regulator of g 88.1 0.47 1.6E-05 53.9 5.8 16 37-52 523-538 (758)
188 4b4t_H 26S protease regulatory 88.1 0.45 1.5E-05 50.3 5.2 18 35-52 243-260 (467)
189 3eaq_A Heat resistant RNA depe 87.7 1.6 5.5E-05 40.9 8.4 70 70-150 32-105 (212)
190 3ber_A Probable ATP-dependent 87.5 2.4 8.1E-05 40.8 9.7 72 242-317 110-192 (249)
191 1t5i_A C_terminal domain of A 87.1 2.7 9.1E-05 37.9 9.3 89 45-152 15-107 (172)
192 2px0_A Flagellar biosynthesis 87.1 1.5 5.1E-05 43.6 8.2 18 35-52 105-122 (296)
193 2zts_A Putative uncharacterize 87.0 0.37 1.3E-05 46.0 3.6 18 35-52 30-47 (251)
194 3e70_C DPA, signal recognition 86.9 2.2 7.5E-05 43.1 9.4 52 145-196 212-264 (328)
195 3m6a_A ATP-dependent protease 86.3 0.92 3.1E-05 49.4 6.6 25 35-61 108-132 (543)
196 3k1j_A LON protease, ATP-depen 85.9 4.6 0.00016 44.4 12.1 30 30-61 55-84 (604)
197 1qvr_A CLPB protein; coiled co 85.8 1.3 4.4E-05 51.1 7.8 25 35-60 191-215 (854)
198 3co5_A Putative two-component 85.5 0.56 1.9E-05 41.0 3.7 20 32-51 24-43 (143)
199 2z43_A DNA repair and recombin 85.5 1.8 6.2E-05 43.5 8.0 63 28-91 95-164 (324)
200 3cmu_A Protein RECA, recombina 85.2 0.87 3E-05 56.6 6.2 46 29-80 1415-1466(2050)
201 2oxc_A Probable ATP-dependent 85.1 2.3 8E-05 40.1 8.1 71 242-317 91-172 (230)
202 3cf2_A TER ATPase, transitiona 84.7 3.4 0.00012 46.9 10.4 16 36-51 239-254 (806)
203 1r6b_X CLPA protein; AAA+, N-t 84.1 2.9 9.9E-05 47.3 9.6 18 35-52 207-224 (758)
204 2jgn_A DBX, DDX3, ATP-dependen 83.7 1.8 6.2E-05 39.6 6.4 90 43-150 27-120 (185)
205 1p9r_A General secretion pathw 83.6 1.4 4.7E-05 46.2 6.2 36 13-51 146-183 (418)
206 3fe2_A Probable ATP-dependent 83.6 3.3 0.00011 39.4 8.5 72 242-317 101-182 (242)
207 1ypw_A Transitional endoplasmi 83.5 1.7 5.8E-05 49.7 7.4 17 35-51 238-254 (806)
208 2ffh_A Protein (FFH); SRP54, s 83.4 11 0.00039 39.3 13.1 50 144-193 180-230 (425)
209 3bh0_A DNAB-like replicative h 83.3 2.6 9E-05 42.2 7.9 49 35-90 68-116 (315)
210 2i4i_A ATP-dependent RNA helic 83.1 5 0.00017 41.2 10.3 72 68-150 275-350 (417)
211 1vec_A ATP-dependent RNA helic 83.0 4.4 0.00015 37.1 8.9 72 242-317 70-152 (206)
212 2l8b_A Protein TRAI, DNA helic 82.7 1.4 4.8E-05 40.4 5.0 60 21-85 35-96 (189)
213 1vma_A Cell division protein F 82.5 7.3 0.00025 38.8 10.8 15 37-51 106-120 (306)
214 2oap_1 GSPE-2, type II secreti 82.3 1.4 4.8E-05 47.5 5.7 40 10-51 236-276 (511)
215 2i1q_A DNA repair and recombin 81.4 3.6 0.00012 41.1 8.2 25 28-52 86-115 (322)
216 1ls1_A Signal recognition part 81.4 8.1 0.00028 38.2 10.6 16 36-51 99-114 (295)
217 3i32_A Heat resistant RNA depe 81.3 6.5 0.00022 39.0 9.9 89 44-151 11-103 (300)
218 3i5x_A ATP-dependent RNA helic 81.3 11 0.00037 40.6 12.6 76 69-152 339-418 (563)
219 3lda_A DNA repair protein RAD5 80.9 4.7 0.00016 41.8 9.0 44 35-78 178-221 (400)
220 4a1f_A DNAB helicase, replicat 80.8 1.2 4.2E-05 45.2 4.4 48 35-89 46-93 (338)
221 3bor_A Human initiation factor 80.6 3.3 0.00011 39.2 7.3 73 242-317 97-179 (237)
222 1e9r_A Conjugal transfer prote 80.3 0.87 3E-05 47.9 3.2 44 34-83 52-95 (437)
223 3iuy_A Probable ATP-dependent 80.2 3.2 0.00011 38.9 7.0 72 242-317 93-173 (228)
224 1xti_A Probable ATP-dependent 80.2 6 0.0002 40.1 9.6 72 243-317 76-158 (391)
225 2eyu_A Twitching motility prot 80.1 0.97 3.3E-05 44.1 3.2 20 32-51 22-41 (261)
226 2pl3_A Probable ATP-dependent 79.6 6.8 0.00023 36.8 9.1 71 242-317 96-177 (236)
227 3fht_A ATP-dependent RNA helic 78.6 12 0.00042 38.0 11.5 73 69-152 266-342 (412)
228 3sqw_A ATP-dependent RNA helic 78.4 17 0.00059 39.4 13.0 77 69-153 288-368 (579)
229 2yhs_A FTSY, cell division pro 77.5 4.7 0.00016 43.0 7.7 33 37-75 295-327 (503)
230 3cf2_A TER ATPase, transitiona 77.3 3.4 0.00011 47.0 6.9 17 36-52 512-528 (806)
231 1yks_A Genome polyprotein [con 77.2 2.6 8.8E-05 44.4 5.7 68 70-149 178-245 (440)
232 1qde_A EIF4A, translation init 77.2 3.6 0.00012 38.4 6.2 72 241-317 80-161 (224)
233 2gxq_A Heat resistant RNA depe 77.0 6.5 0.00022 35.9 7.9 72 242-317 71-150 (207)
234 1u0j_A DNA replication protein 76.5 4.6 0.00016 39.4 6.8 43 7-52 73-121 (267)
235 2j37_W Signal recognition part 76.2 40 0.0014 35.9 14.7 35 37-77 103-137 (504)
236 1hv8_A Putative ATP-dependent 76.0 6.6 0.00023 39.2 8.3 73 69-152 238-314 (367)
237 2d7d_A Uvrabc system protein B 75.1 5.1 0.00017 44.6 7.6 77 69-156 445-525 (661)
238 2xau_A PRE-mRNA-splicing facto 74.8 7.4 0.00025 44.1 9.0 75 69-150 303-393 (773)
239 2r44_A Uncharacterized protein 74.7 1.9 6.5E-05 43.2 3.7 24 28-51 39-62 (331)
240 3pey_A ATP-dependent RNA helic 74.5 25 0.00084 35.3 12.3 76 69-155 243-322 (395)
241 2xxa_A Signal recognition part 74.5 26 0.00088 36.6 12.5 16 37-52 102-117 (433)
242 1kgd_A CASK, peripheral plasma 74.3 1.7 5.9E-05 39.4 3.0 19 33-51 3-21 (180)
243 1lvg_A Guanylate kinase, GMP k 74.0 2.2 7.4E-05 39.5 3.6 25 34-60 3-27 (198)
244 1s2m_A Putative ATP-dependent 73.2 7.8 0.00027 39.5 8.1 72 69-151 258-333 (400)
245 3nbx_X ATPase RAVA; AAA+ ATPas 72.4 4.4 0.00015 43.4 6.0 30 22-51 28-57 (500)
246 3ly5_A ATP-dependent RNA helic 72.2 9.8 0.00033 36.6 8.1 72 242-317 125-207 (262)
247 3trf_A Shikimate kinase, SK; a 72.1 1.7 5.9E-05 39.3 2.4 18 35-52 5-22 (185)
248 3hws_A ATP-dependent CLP prote 72.0 4.7 0.00016 41.0 6.0 19 34-52 50-68 (363)
249 3b85_A Phosphate starvation-in 71.7 3.3 0.00011 38.7 4.3 30 22-51 9-38 (208)
250 1qhx_A CPT, protein (chloramph 71.6 1.8 6.1E-05 38.9 2.4 17 35-51 3-19 (178)
251 2j0s_A ATP-dependent RNA helic 71.4 8.5 0.00029 39.4 7.9 71 70-151 277-351 (410)
252 2gza_A Type IV secretion syste 71.4 2.5 8.5E-05 43.3 3.7 25 34-60 174-198 (361)
253 1ofh_A ATP-dependent HSL prote 71.3 7 0.00024 38.2 6.9 18 35-52 50-67 (310)
254 2v6i_A RNA helicase; membrane, 71.0 4.4 0.00015 42.5 5.5 53 70-126 172-224 (431)
255 2bjv_A PSP operon transcriptio 70.8 2.9 0.0001 40.3 3.9 18 34-51 28-45 (265)
256 1q0u_A Bstdead; DEAD protein, 70.8 4.3 0.00015 37.8 4.9 72 242-317 71-156 (219)
257 1c4o_A DNA nucleotide excision 70.8 7.6 0.00026 43.2 7.7 77 69-156 439-519 (664)
258 1tue_A Replication protein E1; 70.7 5.9 0.0002 37.1 5.7 43 8-52 29-75 (212)
259 3lw7_A Adenylate kinase relate 70.7 1.8 6.2E-05 38.3 2.2 16 37-52 3-18 (179)
260 3a8t_A Adenylate isopentenyltr 70.5 2.2 7.6E-05 43.2 3.0 17 36-52 41-57 (339)
261 2db3_A ATP-dependent RNA helic 70.4 10 0.00036 39.4 8.4 68 72-150 303-374 (434)
262 3tau_A Guanylate kinase, GMP k 70.2 2.4 8.3E-05 39.4 3.0 18 34-51 7-24 (208)
263 3cmu_A Protein RECA, recombina 70.1 6 0.0002 49.3 7.1 46 34-86 1080-1125(2050)
264 3vaa_A Shikimate kinase, SK; s 70.1 2.5 8.7E-05 38.9 3.1 18 34-51 24-41 (199)
265 3cmw_A Protein RECA, recombina 69.9 5.4 0.00018 49.0 6.5 91 36-158 1432-1523(1706)
266 3vkg_A Dynein heavy chain, cyt 69.7 6.9 0.00023 51.0 7.7 77 6-86 874-954 (3245)
267 3exa_A TRNA delta(2)-isopenten 69.4 2.4 8.2E-05 42.5 2.9 16 37-52 5-20 (322)
268 2qor_A Guanylate kinase; phosp 69.3 2 6.8E-05 39.8 2.2 20 32-51 9-28 (204)
269 3foz_A TRNA delta(2)-isopenten 69.0 2.5 8.5E-05 42.3 2.9 16 37-52 12-27 (316)
270 1sky_E F1-ATPase, F1-ATP synth 68.9 4.4 0.00015 42.9 5.0 26 27-52 140-168 (473)
271 3fmo_B ATP-dependent RNA helic 68.8 7.5 0.00026 38.4 6.5 68 243-317 162-241 (300)
272 1w36_B RECB, exodeoxyribonucle 68.7 7.2 0.00025 46.5 7.3 57 36-92 17-79 (1180)
273 3iij_A Coilin-interacting nucl 68.6 1.7 5.8E-05 39.2 1.5 19 34-52 10-28 (180)
274 3io5_A Recombination and repai 68.4 6.1 0.00021 39.6 5.6 41 37-81 30-70 (333)
275 2oca_A DAR protein, ATP-depend 68.2 28 0.00094 36.8 11.3 74 71-154 349-426 (510)
276 1wrb_A DJVLGB; RNA helicase, D 68.1 12 0.00041 35.5 7.7 71 243-317 100-180 (253)
277 3tr0_A Guanylate kinase, GMP k 67.9 3.2 0.00011 38.0 3.3 25 34-60 6-30 (205)
278 1zp6_A Hypothetical protein AT 67.7 1.9 6.7E-05 39.1 1.7 18 34-51 8-25 (191)
279 2ewv_A Twitching motility prot 67.6 2.7 9.2E-05 43.2 3.0 18 34-51 135-152 (372)
280 2ze6_A Isopentenyl transferase 67.4 2.8 9.7E-05 40.4 2.9 15 37-51 3-17 (253)
281 2wv9_A Flavivirin protease NS2 67.4 5.7 0.0002 44.2 5.7 69 69-149 410-478 (673)
282 1ex7_A Guanylate kinase; subst 67.2 2.8 9.5E-05 38.6 2.7 16 36-51 2-17 (186)
283 2yjt_D ATP-dependent RNA helic 70.4 1.1 3.9E-05 40.2 0.0 73 69-152 30-106 (170)
284 4ag6_A VIRB4 ATPase, type IV s 66.9 5.7 0.0002 40.8 5.3 42 34-81 34-75 (392)
285 2pt7_A CAG-ALFA; ATPase, prote 66.7 3 0.0001 42.1 3.0 26 34-61 170-195 (330)
286 1kag_A SKI, shikimate kinase I 66.4 3.7 0.00013 36.5 3.3 23 35-59 4-26 (173)
287 1z6g_A Guanylate kinase; struc 66.4 3.8 0.00013 38.5 3.5 25 34-60 22-46 (218)
288 3ney_A 55 kDa erythrocyte memb 66.3 3.3 0.00011 38.4 3.0 18 34-51 18-35 (197)
289 1fuu_A Yeast initiation factor 66.2 16 0.00056 36.7 8.7 71 242-317 88-168 (394)
290 3b9p_A CG5977-PA, isoform A; A 66.0 2.5 8.6E-05 41.5 2.3 18 35-52 54-71 (297)
291 1y63_A LMAJ004144AAA protein; 66.0 2.8 9.5E-05 38.1 2.4 17 35-51 10-26 (184)
292 1z6t_A APAF-1, apoptotic prote 65.8 32 0.0011 37.1 11.4 31 22-52 129-164 (591)
293 3a00_A Guanylate kinase, GMP k 65.7 3.9 0.00013 37.2 3.4 23 36-60 2-24 (186)
294 4akg_A Glutathione S-transfera 65.6 7.3 0.00025 50.1 6.8 46 7-53 892-941 (2695)
295 2jlq_A Serine protease subunit 65.4 7.1 0.00024 41.1 5.8 67 71-149 190-256 (451)
296 1gku_B Reverse gyrase, TOP-RG; 65.3 12 0.00041 44.0 8.3 74 242-317 98-181 (1054)
297 3kb2_A SPBC2 prophage-derived 65.2 2.8 9.6E-05 37.1 2.3 15 37-51 3-17 (173)
298 2qmh_A HPR kinase/phosphorylas 65.1 2.7 9.3E-05 39.2 2.1 17 35-51 34-50 (205)
299 1ly1_A Polynucleotide kinase; 65.1 2.8 9.6E-05 37.4 2.2 15 37-51 4-18 (181)
300 4a2p_A RIG-I, retinoic acid in 65.0 8.3 0.00028 41.2 6.4 71 243-317 55-136 (556)
301 2j41_A Guanylate kinase; GMP, 64.8 3.6 0.00012 37.7 3.0 24 34-59 5-28 (207)
302 1j8m_F SRP54, signal recogniti 64.6 72 0.0025 31.2 12.7 15 38-52 101-115 (297)
303 2v9p_A Replication protein E1; 64.2 4.1 0.00014 40.6 3.4 25 35-61 126-150 (305)
304 1lv7_A FTSH; alpha/beta domain 64.0 2.8 9.7E-05 40.2 2.2 17 35-51 45-61 (257)
305 3jvv_A Twitching mobility prot 64.0 3.3 0.00011 42.3 2.8 17 35-51 123-139 (356)
306 3nwj_A ATSK2; P loop, shikimat 63.8 4.6 0.00016 39.0 3.6 19 33-51 46-64 (250)
307 1kht_A Adenylate kinase; phosp 63.4 3.2 0.00011 37.4 2.3 17 35-51 3-19 (192)
308 4eun_A Thermoresistant glucoki 63.2 4.7 0.00016 37.0 3.5 23 35-59 29-51 (200)
309 3crm_A TRNA delta(2)-isopenten 63.2 3.7 0.00013 41.3 2.9 16 37-52 7-22 (323)
310 3eph_A TRNA isopentenyltransfe 63.0 4.2 0.00014 42.2 3.3 15 38-52 5-19 (409)
311 3uk6_A RUVB-like 2; hexameric 62.8 3.7 0.00013 41.6 2.9 24 36-60 71-94 (368)
312 1ojl_A Transcriptional regulat 62.1 4.8 0.00017 39.9 3.5 18 34-51 24-41 (304)
313 3d3q_A TRNA delta(2)-isopenten 61.9 4.1 0.00014 41.2 3.0 16 37-52 9-24 (340)
314 2ius_A DNA translocase FTSK; n 61.8 10 0.00036 40.6 6.2 27 35-62 167-193 (512)
315 3bgw_A DNAB-like replicative h 61.7 7.1 0.00024 41.1 4.9 48 35-89 197-244 (444)
316 4gp7_A Metallophosphoesterase; 61.6 3.1 0.00011 37.3 1.8 18 35-52 9-26 (171)
317 3cm0_A Adenylate kinase; ATP-b 61.0 2.8 9.4E-05 37.8 1.4 17 35-51 4-20 (186)
318 1wp9_A ATP-dependent RNA helic 61.0 26 0.0009 36.0 9.3 72 241-317 50-131 (494)
319 1knq_A Gluconate kinase; ALFA/ 61.0 3.3 0.00011 37.0 1.9 17 35-51 8-24 (175)
320 1rj9_A FTSY, signal recognitio 60.6 7.6 0.00026 38.6 4.7 26 35-62 102-127 (304)
321 1ye8_A Protein THEP1, hypothet 60.6 5.6 0.00019 36.1 3.4 22 37-60 2-23 (178)
322 1v5w_A DMC1, meiotic recombina 60.4 5.9 0.0002 40.1 3.9 50 29-79 111-166 (343)
323 1f2t_A RAD50 ABC-ATPase; DNA d 60.2 6 0.0002 34.7 3.4 23 37-61 25-47 (149)
324 3dkp_A Probable ATP-dependent 60.1 4.4 0.00015 38.4 2.7 72 243-317 98-181 (245)
325 3o8b_A HCV NS3 protease/helica 60.0 10 0.00034 42.1 5.8 67 68-149 395-461 (666)
326 1znw_A Guanylate kinase, GMP k 59.5 5.4 0.00018 36.9 3.2 28 31-60 16-43 (207)
327 3c8u_A Fructokinase; YP_612366 59.4 4.4 0.00015 37.5 2.5 25 35-61 22-46 (208)
328 2bdt_A BH3686; alpha-beta prot 59.3 4.1 0.00014 36.9 2.3 16 36-51 3-18 (189)
329 3t61_A Gluconokinase; PSI-biol 59.1 4.1 0.00014 37.4 2.2 16 36-51 19-34 (202)
330 3eiq_A Eukaryotic initiation f 59.0 30 0.001 35.1 9.1 73 242-317 107-189 (414)
331 2l82_A Designed protein OR32; 58.9 33 0.0011 27.9 7.2 112 246-362 5-125 (162)
332 4fcw_A Chaperone protein CLPB; 58.8 4.9 0.00017 39.5 2.9 17 36-52 48-64 (311)
333 3kta_A Chromosome segregation 58.6 5.6 0.00019 35.6 3.1 23 37-61 28-50 (182)
334 3u4q_B ATP-dependent helicase/ 58.6 7.6 0.00026 46.3 5.0 32 244-275 343-375 (1166)
335 3t15_A Ribulose bisphosphate c 58.5 4.7 0.00016 39.7 2.7 17 36-52 37-53 (293)
336 2whx_A Serine protease/ntpase/ 58.4 14 0.00048 40.6 6.7 68 70-149 356-423 (618)
337 1tf5_A Preprotein translocase 58.3 22 0.00074 40.3 8.2 55 241-301 122-180 (844)
338 1s96_A Guanylate kinase, GMP k 58.3 5.7 0.00019 37.4 3.1 20 32-51 13-32 (219)
339 1via_A Shikimate kinase; struc 58.2 4.8 0.00016 36.0 2.5 17 36-52 5-21 (175)
340 2rhm_A Putative kinase; P-loop 58.1 4.2 0.00014 36.7 2.1 17 35-51 5-21 (193)
341 3uie_A Adenylyl-sulfate kinase 58.0 5.8 0.0002 36.4 3.1 18 34-51 24-41 (200)
342 1um8_A ATP-dependent CLP prote 57.9 5.8 0.0002 40.5 3.3 18 35-52 72-89 (376)
343 4a74_A DNA repair and recombin 57.7 6.1 0.00021 36.7 3.3 17 35-51 25-41 (231)
344 2i3b_A HCR-ntpase, human cance 57.6 7.7 0.00026 35.6 3.8 41 142-185 103-145 (189)
345 1m7g_A Adenylylsulfate kinase; 57.5 5.3 0.00018 37.0 2.7 29 22-51 13-41 (211)
346 2c9o_A RUVB-like 1; hexameric 57.5 5.3 0.00018 42.1 3.0 17 36-52 64-80 (456)
347 1zuh_A Shikimate kinase; alpha 57.4 4.6 0.00016 35.7 2.2 17 36-52 8-24 (168)
348 3asz_A Uridine kinase; cytidin 57.3 6.4 0.00022 36.2 3.3 24 35-60 6-29 (211)
349 2c95_A Adenylate kinase 1; tra 57.1 5 0.00017 36.3 2.4 18 34-51 8-25 (196)
350 1ixz_A ATP-dependent metallopr 57.0 5.5 0.00019 38.0 2.9 16 36-51 50-65 (254)
351 3nwn_A Kinesin-like protein KI 56.9 7.4 0.00025 39.7 3.9 24 29-52 97-122 (359)
352 2ipc_A Preprotein translocase 56.8 27 0.00093 39.9 8.6 56 240-301 117-176 (997)
353 1tev_A UMP-CMP kinase; ploop, 56.6 4.8 0.00016 36.3 2.2 17 36-52 4-20 (196)
354 2iut_A DNA translocase FTSK; n 56.2 14 0.00049 39.9 6.2 43 35-79 214-256 (574)
355 3p32_A Probable GTPase RV1496/ 56.1 92 0.0031 31.2 12.1 16 37-52 81-96 (355)
356 4etp_A Kinesin-like protein KA 55.9 8.4 0.00029 39.9 4.1 25 28-52 132-158 (403)
357 1nks_A Adenylate kinase; therm 55.9 4.8 0.00016 36.2 2.1 15 37-51 3-17 (194)
358 2z0m_A 337AA long hypothetical 55.8 22 0.00075 34.8 7.2 70 243-317 56-135 (337)
359 2fsf_A Preprotein translocase 55.8 21 0.00074 40.4 7.6 71 241-317 113-200 (853)
360 1nkt_A Preprotein translocase 55.4 26 0.00089 39.9 8.2 71 241-317 150-237 (922)
361 2iyv_A Shikimate kinase, SK; t 55.4 6.1 0.00021 35.5 2.7 17 36-52 3-19 (184)
362 1in4_A RUVB, holliday junction 55.4 6.6 0.00023 39.4 3.2 16 36-51 52-67 (334)
363 3fb4_A Adenylate kinase; psych 55.3 5.2 0.00018 37.0 2.3 16 37-52 2-17 (216)
364 3b9q_A Chloroplast SRP recepto 55.2 7.6 0.00026 38.5 3.6 24 37-62 102-125 (302)
365 3qf7_A RAD50; ABC-ATPase, ATPa 55.2 6.4 0.00022 40.2 3.1 16 37-52 25-40 (365)
366 4a2q_A RIG-I, retinoic acid in 55.1 17 0.00057 41.3 6.8 71 243-317 296-377 (797)
367 1bg2_A Kinesin; motor protein, 55.0 8.8 0.0003 38.5 4.0 24 29-52 70-95 (325)
368 2v54_A DTMP kinase, thymidylat 55.0 5.5 0.00019 36.3 2.4 18 34-51 3-20 (204)
369 1gvn_B Zeta; postsegregational 54.9 4.3 0.00015 40.0 1.7 16 36-51 34-49 (287)
370 1e6c_A Shikimate kinase; phosp 54.9 5.9 0.0002 35.0 2.5 16 36-51 3-18 (173)
371 2r62_A Cell division protease 54.9 2.9 9.8E-05 40.4 0.4 18 35-52 44-61 (268)
372 3d8b_A Fidgetin-like protein 1 54.8 6.4 0.00022 40.0 3.0 18 35-52 117-134 (357)
373 1ak2_A Adenylate kinase isoenz 54.5 6.9 0.00023 36.9 3.0 18 35-52 16-33 (233)
374 1qf9_A UMP/CMP kinase, protein 54.4 5.3 0.00018 35.9 2.1 15 37-51 8-22 (194)
375 3tbk_A RIG-I helicase domain; 54.3 13 0.00046 39.4 5.7 71 243-317 52-133 (555)
376 2cdn_A Adenylate kinase; phosp 54.3 4.1 0.00014 37.4 1.3 16 36-51 21-36 (201)
377 3hr8_A Protein RECA; alpha and 54.1 10 0.00035 38.5 4.4 47 27-79 47-99 (356)
378 1cr0_A DNA primase/helicase; R 54.0 14 0.00047 36.1 5.2 18 35-52 35-52 (296)
379 2bwj_A Adenylate kinase 5; pho 53.9 5.4 0.00019 36.2 2.1 18 34-51 11-28 (199)
380 2cvh_A DNA repair and recombin 53.9 7.2 0.00025 35.9 3.0 18 35-52 20-37 (220)
381 3dc4_A Kinesin-like protein NO 53.8 8.6 0.0003 38.9 3.7 24 29-52 87-112 (344)
382 3dl0_A Adenylate kinase; phosp 53.6 5.7 0.0002 36.8 2.3 16 37-52 2-17 (216)
383 3auy_A DNA double-strand break 53.4 7.8 0.00027 39.6 3.4 21 37-59 27-47 (371)
384 1aky_A Adenylate kinase; ATP:A 53.3 6 0.00021 36.8 2.4 17 35-51 4-20 (220)
385 3lnc_A Guanylate kinase, GMP k 53.3 5.3 0.00018 37.6 2.0 17 35-51 27-43 (231)
386 1zd8_A GTP:AMP phosphotransfer 53.0 5.6 0.00019 37.3 2.1 17 35-51 7-23 (227)
387 2pez_A Bifunctional 3'-phospho 53.0 5.5 0.00019 35.7 1.9 24 35-60 5-28 (179)
388 2y65_A Kinesin, kinesin heavy 52.9 9.8 0.00033 38.9 4.0 24 29-52 77-102 (365)
389 2nr8_A Kinesin-like protein KI 52.9 9.4 0.00032 38.9 3.9 24 29-52 96-121 (358)
390 1zak_A Adenylate kinase; ATP:A 52.7 6.5 0.00022 36.6 2.5 18 35-52 5-22 (222)
391 2h58_A Kinesin-like protein KI 52.6 10 0.00035 38.2 4.0 25 28-52 72-98 (330)
392 3tif_A Uncharacterized ABC tra 52.5 7.6 0.00026 36.9 3.0 24 35-60 31-54 (235)
393 1iy2_A ATP-dependent metallopr 52.5 7.3 0.00025 37.8 2.9 16 36-51 74-89 (278)
394 3t0q_A AGR253WP; kinesin, alph 52.5 8.3 0.00028 39.2 3.4 25 28-52 77-103 (349)
395 1jjv_A Dephospho-COA kinase; P 52.4 6.2 0.00021 36.2 2.2 14 38-51 5-18 (206)
396 2vvg_A Kinesin-2; motor protei 52.3 10 0.00035 38.5 4.0 23 30-52 83-107 (350)
397 1v8k_A Kinesin-like protein KI 52.3 9.3 0.00032 39.6 3.8 24 29-52 147-172 (410)
398 4a14_A Kinesin, kinesin-like p 52.2 10 0.00035 38.4 4.0 24 29-52 76-101 (344)
399 1g8p_A Magnesium-chelatase 38 52.2 6.7 0.00023 39.2 2.7 17 35-51 45-61 (350)
400 3rc3_A ATP-dependent RNA helic 52.1 26 0.00088 38.9 7.6 73 72-156 323-401 (677)
401 2zr9_A Protein RECA, recombina 52.1 14 0.00048 37.4 5.1 45 28-78 48-98 (349)
402 3lre_A Kinesin-like protein KI 52.0 10 0.00035 38.6 3.9 24 29-52 98-123 (355)
403 3u06_A Protein claret segregat 51.9 9.2 0.00032 39.7 3.7 25 28-52 130-156 (412)
404 1cke_A CK, MSSA, protein (cyti 51.8 7.9 0.00027 36.0 2.9 16 36-51 6-21 (227)
405 1htw_A HI0065; nucleotide-bind 51.7 8 0.00027 34.3 2.8 25 35-61 33-57 (158)
406 3b6e_A Interferon-induced heli 51.7 12 0.0004 34.2 4.1 55 243-301 82-140 (216)
407 3b6u_A Kinesin-like protein KI 51.7 10 0.00035 38.9 3.9 24 29-52 94-119 (372)
408 2jaq_A Deoxyguanosine kinase; 51.7 6.4 0.00022 35.8 2.2 15 37-51 2-16 (205)
409 3gbj_A KIF13B protein; kinesin 51.6 10 0.00034 38.6 3.8 24 29-52 85-110 (354)
410 1ukz_A Uridylate kinase; trans 51.6 6.5 0.00022 35.9 2.3 15 37-51 17-31 (203)
411 1goj_A Kinesin, kinesin heavy 51.6 10 0.00036 38.5 3.9 23 30-52 74-98 (355)
412 2zfi_A Kinesin-like protein KI 51.5 11 0.00036 38.6 4.0 24 29-52 82-107 (366)
413 2pt5_A Shikimate kinase, SK; a 51.5 6.6 0.00022 34.6 2.2 15 37-51 2-16 (168)
414 1t5c_A CENP-E protein, centrom 51.4 10 0.00035 38.4 3.9 24 29-52 70-95 (349)
415 3qks_A DNA double-strand break 51.3 9.6 0.00033 35.2 3.4 25 37-63 25-49 (203)
416 2if2_A Dephospho-COA kinase; a 51.3 6.3 0.00022 36.1 2.1 15 37-51 3-17 (204)
417 1u94_A RECA protein, recombina 51.3 15 0.00053 37.2 5.2 44 28-77 50-99 (356)
418 2yvu_A Probable adenylyl-sulfa 51.2 5.9 0.0002 35.8 1.9 17 35-51 13-29 (186)
419 2x8a_A Nuclear valosin-contain 51.2 6.4 0.00022 38.4 2.2 16 36-51 45-60 (274)
420 3ice_A Transcription terminati 50.7 57 0.0019 33.6 9.2 32 21-52 157-191 (422)
421 2f1r_A Molybdopterin-guanine d 50.6 7 0.00024 35.2 2.2 23 37-61 4-26 (171)
422 1f9v_A Kinesin-like protein KA 50.2 9.1 0.00031 38.8 3.2 24 29-52 77-102 (347)
423 2r8r_A Sensor protein; KDPD, P 50.2 17 0.0006 34.3 5.0 25 37-62 8-32 (228)
424 2plr_A DTMP kinase, probable t 50.2 7 0.00024 35.8 2.2 17 35-51 4-20 (213)
425 1x88_A Kinesin-like protein KI 50.1 10 0.00034 38.7 3.6 24 29-52 81-106 (359)
426 1sxj_A Activator 1 95 kDa subu 50.0 13 0.00044 39.8 4.6 40 144-185 148-189 (516)
427 1nij_A Hypothetical protein YJ 50.0 9.7 0.00033 37.9 3.4 14 38-51 7-20 (318)
428 2og2_A Putative signal recogni 50.0 10 0.00034 38.7 3.5 24 37-62 159-182 (359)
429 1q57_A DNA primase/helicase; d 50.0 12 0.00041 39.9 4.3 49 35-89 242-290 (503)
430 2pbr_A DTMP kinase, thymidylat 49.8 7.2 0.00025 35.1 2.2 14 38-51 3-16 (195)
431 3a4m_A L-seryl-tRNA(SEC) kinas 49.7 7 0.00024 37.7 2.2 16 36-51 5-20 (260)
432 3cob_A Kinesin heavy chain-lik 49.7 9.3 0.00032 39.1 3.2 25 28-52 71-97 (369)
433 2wbe_C Bipolar kinesin KRP-130 49.6 11 0.00037 38.6 3.7 23 30-52 94-118 (373)
434 3f9v_A Minichromosome maintena 49.5 7.3 0.00025 42.7 2.5 15 37-51 329-343 (595)
435 2wwf_A Thymidilate kinase, put 49.4 7.2 0.00025 35.8 2.2 18 34-51 9-26 (212)
436 2qt1_A Nicotinamide riboside k 49.2 9 0.00031 35.2 2.8 17 35-51 21-37 (207)
437 2va8_A SSO2462, SKI2-type heli 49.1 40 0.0014 37.4 8.7 74 70-150 253-362 (715)
438 3pxg_A Negative regulator of g 48.9 8.9 0.0003 40.6 3.1 18 35-52 201-218 (468)
439 1ry6_A Internal kinesin; kines 48.8 11 0.00038 38.4 3.6 19 34-52 82-102 (360)
440 1xjc_A MOBB protein homolog; s 48.8 20 0.00067 32.2 4.9 22 38-60 7-28 (169)
441 3gk5_A Uncharacterized rhodane 48.8 18 0.0006 29.5 4.3 37 242-278 54-90 (108)
442 1nn5_A Similar to deoxythymidy 48.8 7.6 0.00026 35.7 2.3 18 34-51 8-25 (215)
443 3sr0_A Adenylate kinase; phosp 48.7 9.7 0.00033 35.4 3.0 15 38-52 3-17 (206)
444 1e4v_A Adenylate kinase; trans 48.6 7.4 0.00025 36.1 2.1 15 37-51 2-16 (214)
445 3foj_A Uncharacterized protein 48.5 11 0.00038 30.2 3.0 37 242-278 55-91 (100)
446 4gl2_A Interferon-induced heli 48.5 17 0.00058 40.3 5.5 75 69-150 400-488 (699)
447 2z0h_A DTMP kinase, thymidylat 48.4 7.9 0.00027 35.0 2.3 14 38-51 3-16 (197)
448 2heh_A KIF2C protein; kinesin, 48.2 12 0.0004 38.6 3.7 24 29-52 127-152 (387)
449 2vli_A Antibiotic resistance p 48.2 5.9 0.0002 35.4 1.4 18 35-52 5-22 (183)
450 3tlx_A Adenylate kinase 2; str 47.9 8.7 0.0003 36.6 2.6 18 35-52 29-46 (243)
451 1wv9_A Rhodanese homolog TT165 47.8 13 0.00043 29.4 3.2 35 244-278 54-88 (94)
452 1g41_A Heat shock protein HSLU 47.5 8.3 0.00028 40.5 2.5 17 35-51 50-66 (444)
453 1xp8_A RECA protein, recombina 47.2 19 0.00064 36.8 5.1 45 28-78 61-111 (366)
454 3aez_A Pantothenate kinase; tr 47.0 11 0.00039 37.4 3.3 24 37-62 92-115 (312)
455 3bfn_A Kinesin-like protein KI 46.9 11 0.00036 38.9 3.1 32 21-52 75-116 (388)
456 2ykg_A Probable ATP-dependent 46.9 17 0.00058 40.3 5.1 70 244-317 62-142 (696)
457 3eme_A Rhodanese-like domain p 46.8 10 0.00035 30.5 2.5 37 242-278 55-91 (103)
458 3tqc_A Pantothenate kinase; bi 46.7 31 0.0011 34.4 6.5 23 38-62 95-117 (321)
459 3umf_A Adenylate kinase; rossm 46.3 11 0.00037 35.4 2.9 17 36-52 30-46 (217)
460 1uf9_A TT1252 protein; P-loop, 46.3 10 0.00036 34.3 2.8 15 37-51 10-24 (203)
461 2owm_A Nckin3-434, related to 46.3 14 0.00048 38.8 4.0 23 30-52 130-154 (443)
462 2bbw_A Adenylate kinase 4, AK4 46.3 11 0.00037 35.8 2.9 17 35-51 27-43 (246)
463 2xb4_A Adenylate kinase; ATP-b 46.3 8.6 0.00029 36.0 2.2 15 37-51 2-16 (223)
464 1odf_A YGR205W, hypothetical 3 46.1 12 0.00042 36.8 3.4 14 38-51 34-47 (290)
465 3be4_A Adenylate kinase; malar 46.1 8.8 0.0003 35.7 2.2 17 35-51 5-21 (217)
466 2ghi_A Transport protein; mult 45.9 11 0.00037 36.4 3.0 24 35-60 46-69 (260)
467 2p5t_B PEZT; postsegregational 45.9 6.7 0.00023 37.6 1.4 16 36-51 33-48 (253)
468 4e22_A Cytidylate kinase; P-lo 45.9 11 0.00038 36.0 3.0 17 35-51 27-43 (252)
469 2pcj_A ABC transporter, lipopr 45.5 11 0.00037 35.5 2.8 24 35-60 30-53 (224)
470 1gtv_A TMK, thymidylate kinase 45.5 8.2 0.00028 35.5 1.9 14 38-51 3-16 (214)
471 1nlf_A Regulatory protein REPA 45.4 11 0.00037 36.6 2.9 20 33-52 28-47 (279)
472 2cbz_A Multidrug resistance-as 45.2 9.8 0.00033 36.2 2.4 23 35-59 31-53 (237)
473 1sgw_A Putative ABC transporte 45.2 11 0.00037 35.3 2.7 25 34-60 34-58 (214)
474 2z83_A Helicase/nucleoside tri 45.1 14 0.00048 38.9 3.9 68 70-149 191-258 (459)
475 3hix_A ALR3790 protein; rhodan 44.9 19 0.00064 29.2 3.9 37 242-278 51-88 (106)
476 1vht_A Dephospho-COA kinase; s 44.8 9.4 0.00032 35.4 2.2 15 37-51 6-20 (218)
477 2ce7_A Cell division protein F 44.7 8.7 0.0003 40.8 2.2 17 36-52 50-66 (476)
478 2rep_A Kinesin-like protein KI 44.5 14 0.00046 38.0 3.5 24 29-52 108-133 (376)
479 2jeo_A Uridine-cytidine kinase 43.5 15 0.0005 34.9 3.4 21 37-59 27-47 (245)
480 2pze_A Cystic fibrosis transme 43.5 11 0.00037 35.7 2.4 24 35-60 34-57 (229)
481 3qkt_A DNA double-strand break 43.4 9.8 0.00034 38.3 2.2 16 37-52 25-40 (339)
482 3nh6_A ATP-binding cassette SU 43.3 11 0.00039 37.4 2.7 24 35-60 80-103 (306)
483 3l9o_A ATP-dependent RNA helic 43.1 30 0.001 40.8 6.6 65 242-317 226-296 (1108)
484 3fmp_B ATP-dependent RNA helic 43.0 5.1 0.00017 42.3 0.0 70 69-149 333-406 (479)
485 1rz3_A Hypothetical protein rb 42.9 13 0.00044 34.1 2.8 15 37-51 24-38 (201)
486 1vpl_A ABC transporter, ATP-bi 42.9 13 0.00044 35.8 2.9 24 35-60 41-64 (256)
487 3iwh_A Rhodanese-like domain p 42.9 13 0.00044 30.2 2.5 35 243-277 56-90 (103)
488 1np6_A Molybdopterin-guanine d 42.8 16 0.00055 32.9 3.4 23 37-60 8-30 (174)
489 2ff7_A Alpha-hemolysin translo 42.8 11 0.00038 36.0 2.4 24 35-60 35-58 (247)
490 3g5j_A Putative ATP/GTP bindin 42.7 23 0.00077 29.7 4.2 36 244-279 90-126 (134)
491 3gfo_A Cobalt import ATP-bindi 42.6 11 0.00037 36.8 2.4 23 35-59 34-56 (275)
492 2olj_A Amino acid ABC transpor 42.4 13 0.00045 35.9 2.9 24 35-60 50-73 (263)
493 2grj_A Dephospho-COA kinase; T 42.4 11 0.00038 34.5 2.3 15 38-52 15-29 (192)
494 2ixe_A Antigen peptide transpo 42.3 13 0.00046 36.1 3.0 24 35-60 45-68 (271)
495 1g6h_A High-affinity branched- 42.0 12 0.0004 36.1 2.4 24 35-60 33-56 (257)
496 1ji0_A ABC transporter; ATP bi 41.7 12 0.00041 35.6 2.4 24 35-60 32-55 (240)
497 1ltq_A Polynucleotide kinase; 41.7 11 0.00037 36.9 2.2 16 37-52 4-19 (301)
498 1pzn_A RAD51, DNA repair and r 41.6 15 0.0005 37.2 3.2 17 36-52 132-148 (349)
499 2ihy_A ABC transporter, ATP-bi 41.4 14 0.00048 36.1 2.9 24 35-60 47-70 (279)
500 2ck3_D ATP synthase subunit be 41.2 88 0.003 32.9 9.1 25 27-51 142-169 (482)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.8e-60 Score=512.69 Aligned_cols=355 Identities=34% Similarity=0.561 Sum_probs=318.1
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCC--CCCCcEEEEEcChH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK--RIPAIRVLILTPTR 79 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~--~~~~~~vLiL~Ptr 79 (602)
+++|++.++++|..+||..|||+|.++||.++.|+|++++||||||||++|++|+++.+..... ...++++|||+||+
T Consensus 60 ~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~Ptr 139 (434)
T 2db3_A 60 SADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTR 139 (434)
T ss_dssp GSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSH
T ss_pred hcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCH
Confidence 5899999999999999999999999999999999999999999999999999999999887542 23466899999999
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccC
Q 007481 80 ELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 159 (602)
Q Consensus 80 ~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~ 159 (602)
+||.|+++.+..++...+++++.++|+.+...+...+..+++|+|+||++|++++.+. .+.+.++++|||||||+|+++
T Consensus 140 eLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~-~~~l~~~~~lVlDEah~~~~~ 218 (434)
T 2db3_A 140 ELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT-FITFEDTRFVVLDEADRMLDM 218 (434)
T ss_dssp HHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT-SCCCTTCCEEEEETHHHHTST
T ss_pred HHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhC-CcccccCCeEEEccHhhhhcc
Confidence 9999999999999988889999999999998888888899999999999999999875 467899999999999999999
Q ss_pred CcHHHHHHHHHhC--CCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHH
Q 007481 160 GFSAEIHELVRLC--PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 237 (602)
Q Consensus 160 gf~~~i~~i~~~~--~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l 237 (602)
||...+..++..+ +...|+++||||+++.+..++..++.+|+.+.+.........+.+.+..+.. ..+...+..+
T Consensus 219 gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~---~~k~~~l~~~ 295 (434)
T 2db3_A 219 GFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNK---YAKRSKLIEI 295 (434)
T ss_dssp TTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCG---GGHHHHHHHH
T ss_pred CcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCc---HHHHHHHHHH
Confidence 9999999999875 6788999999999999999999999999988877665556667777666543 3455556666
Q ss_pred hhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEE
Q 007481 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN 317 (602)
Q Consensus 238 ~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~ 317 (602)
+.... .++||||+++..++.++..|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++|||
T Consensus 296 l~~~~-~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~ 374 (434)
T 2db3_A 296 LSEQA-DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVIN 374 (434)
T ss_dssp HHHCC-TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEE
T ss_pred HHhCC-CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEE
Confidence 65544 34999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHhhhcccCCCcceEEEEEec-CcHHHHHHHHHH
Q 007481 318 YACPRDLTSYVHRVGRTARAGREGYAVTFVTD-NDRSLLKAIAKR 361 (602)
Q Consensus 318 ~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~-~d~~~l~~i~~~ 361 (602)
||+|.+..+|+||+||+||+|+.|.+++|+++ .+..++..+.+.
T Consensus 375 ~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~ 419 (434)
T 2db3_A 375 YDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKI 419 (434)
T ss_dssp SSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHH
T ss_pred ECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHH
Confidence 99999999999999999999999999999995 455566555544
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.7e-57 Score=487.60 Aligned_cols=364 Identities=31% Similarity=0.527 Sum_probs=328.6
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+|+|++.++++|..+||..|+|+|.++|+.++.|+|+++.+|||||||++|++|+++.+... ..+.++|||+||++|
T Consensus 41 ~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~---~~~~~~lil~Pt~~L 117 (410)
T 2j0s_A 41 TMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ---VRETQALILAPTREL 117 (410)
T ss_dssp GGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT---SCSCCEEEECSSHHH
T ss_pred hcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc---cCCceEEEEcCcHHH
Confidence 57999999999999999999999999999999999999999999999999999999876432 234579999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCc
Q 007481 82 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF 161 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf 161 (602)
+.|+++.+..++...++.+..++|+.....+...+..+++|+|+||++|.+++.+. .+.+..+++|||||||++.+++|
T Consensus 118 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~-~~~~~~~~~vViDEah~~~~~~~ 196 (410)
T 2j0s_A 118 AVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR-SLRTRAIKMLVLDEADEMLNKGF 196 (410)
T ss_dssp HHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEETHHHHTSTTT
T ss_pred HHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhC-CccHhheeEEEEccHHHHHhhhh
Confidence 99999999999988899999999999988887888888999999999999999874 56788899999999999999999
Q ss_pred HHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhhc
Q 007481 162 SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241 (602)
Q Consensus 162 ~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~ 241 (602)
...+..++..++...|++++|||+++.+.++...++..|..+.+.........+.+.+..+.. ...+...+..++...
T Consensus 197 ~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~k~~~l~~~~~~~ 274 (410)
T 2j0s_A 197 KEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVER--EEWKFDTLCDLYDTL 274 (410)
T ss_dssp HHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESS--TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCc--HHhHHHHHHHHHHhc
Confidence 999999999999999999999999999888888888899888766555556666766666543 233556667777766
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCC
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACP 321 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p 321 (602)
..+++||||+++..++.++..|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p 354 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLP 354 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCC
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcchhhhh
Q 007481 322 RDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIV 371 (602)
Q Consensus 322 ~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~ 371 (602)
++...|+||+||+||.|+.|.+++|+++.+...++.+.+.++..+....+
T Consensus 355 ~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 355 NNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp SSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred CCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceeccc
Confidence 99999999999999999999999999999999999999988877665443
No 3
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1e-56 Score=482.18 Aligned_cols=357 Identities=35% Similarity=0.554 Sum_probs=314.0
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCC---------------C
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK---------------R 66 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~---------------~ 66 (602)
+|+|++.++++|..+||..|||+|.++||.++.|+|+++.||||||||++|++|+++.+..... .
T Consensus 19 ~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 98 (417)
T 2i4i_A 19 DVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRR 98 (417)
T ss_dssp GSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSC
T ss_pred hCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccc
Confidence 6899999999999999999999999999999999999999999999999999999998875431 1
Q ss_pred CCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcc
Q 007481 67 IPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLA 146 (602)
Q Consensus 67 ~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~ 146 (602)
..++++|||+||++|+.|+++.+..+....++.++.++|+.....+...+..+++|+|+||++|.+++... .+.+..++
T Consensus 99 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~-~~~~~~~~ 177 (417)
T 2i4i_A 99 KQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERG-KIGLDFCK 177 (417)
T ss_dssp SBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT-SBCCTTCC
T ss_pred cCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcC-CcChhhCc
Confidence 12367999999999999999999999988899999999999988888888889999999999999999874 46788999
Q ss_pred eEEEeCccccccCCcHHHHHHHHHh--CCC--CcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeee
Q 007481 147 VLILDEADRLLELGFSAEIHELVRL--CPK--RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI 222 (602)
Q Consensus 147 llVlDEah~l~~~gf~~~i~~i~~~--~~~--~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~ 222 (602)
+|||||||++.+++|...+..++.. ++. ..|++++|||+++.+..+...++..|+.+...........+.+.++.+
T Consensus 178 ~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 257 (417)
T 2i4i_A 178 YLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWV 257 (417)
T ss_dssp EEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEEC
T ss_pred EEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEe
Confidence 9999999999999999999999874 333 678999999999999999999999998887766555666677766665
Q ss_pred chhhhhhHHHHHHHHhhhc-CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC
Q 007481 223 RRMREVNQEAVLLSLCSKT-FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301 (602)
Q Consensus 223 ~~~~~~~k~~~l~~l~~~~-~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~ 301 (602)
.. ..+...+..++... .++++||||+++..++.++..|...|+.+..+||++++.+|..+++.|++|+.+|||||+
T Consensus 258 ~~---~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 334 (417)
T 2i4i_A 258 EE---SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 334 (417)
T ss_dssp CG---GGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH
T ss_pred cc---HhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC
Confidence 43 34555666666554 467999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHh
Q 007481 302 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362 (602)
Q Consensus 302 ~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~ 362 (602)
++++|+|+|++++||+||+|++...|+||+||+||.|+.|.+++|+++.+...+..+.+.+
T Consensus 335 ~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~ 395 (417)
T 2i4i_A 335 VAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLL 395 (417)
T ss_dssp HHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHH
T ss_pred hhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988888777654
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=5.4e-55 Score=466.47 Aligned_cols=360 Identities=33% Similarity=0.525 Sum_probs=320.9
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+|+|++.++++|..+||..|+|+|.++++.++.|+++++.+|||||||++|++|++..+.... .+.++|||+|+++|
T Consensus 25 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~---~~~~~lil~P~~~L 101 (400)
T 1s2m_A 25 DFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL---NKIQALIMVPTREL 101 (400)
T ss_dssp GGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTS---CSCCEEEECSSHHH
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhcc---CCccEEEEcCCHHH
Confidence 689999999999999999999999999999999999999999999999999999998875432 34579999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCc
Q 007481 82 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF 161 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf 161 (602)
+.|+++.+..+....++.+..++|+.....+...+...++|+|+||++|.+++.+. ...+.++++|||||||++.+.+|
T Consensus 102 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~-~~~~~~~~~vIiDEaH~~~~~~~ 180 (400)
T 1s2m_A 102 ALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRK-VADLSDCSLFIMDEADKMLSRDF 180 (400)
T ss_dssp HHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT-CSCCTTCCEEEEESHHHHSSHHH
T ss_pred HHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhC-CcccccCCEEEEeCchHhhhhch
Confidence 99999999999888899999999999887777777788999999999999988764 46688999999999999998889
Q ss_pred HHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhhc
Q 007481 162 SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241 (602)
Q Consensus 162 ~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~ 241 (602)
...+..++..++...|++++|||++..+.......+..|..+..... .....+.+.+..+. ...+...+..++...
T Consensus 181 ~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~k~~~l~~~~~~~ 256 (400)
T 1s2m_A 181 KTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVE---ERQKLHCLNTLFSKL 256 (400)
T ss_dssp HHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECC---GGGHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEec---hhhHHHHHHHHHhhc
Confidence 99999999999999999999999999999999888888877665433 22334444444432 234556666667666
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCC
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACP 321 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p 321 (602)
..+++||||+++..++.++..|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p 336 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFP 336 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCC
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcchhh
Q 007481 322 RDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSR 369 (602)
Q Consensus 322 ~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~~~~ 369 (602)
++...|+||+||+||.|+.|.|++|+++.|...++.+.+.++..+...
T Consensus 337 ~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~ 384 (400)
T 1s2m_A 337 KTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAI 384 (400)
T ss_dssp SSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEEC
T ss_pred CCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccc
Confidence 999999999999999999999999999999999999999988777643
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.2e-55 Score=473.23 Aligned_cols=362 Identities=30% Similarity=0.518 Sum_probs=313.4
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+++|++.++++|..+||..|+|+|.++|+.++.|+++++.+|||||||++|++|+++.+.... .+.++|||+||++|
T Consensus 44 ~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~---~~~~~lil~P~~~L 120 (414)
T 3eiq_A 44 DMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL---KATQALVLAPTREL 120 (414)
T ss_dssp GGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS---CSCCEEEECSSHHH
T ss_pred hCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC---CceeEEEEeChHHH
Confidence 578999999999999999999999999999999999999999999999999999998875432 34579999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHc-CCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC
Q 007481 82 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 160 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~-~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g 160 (602)
+.|+++.+..+....++.+..++|+.....+...+. ..++|+|+||++|++++... .+.+..+++|||||||++.+++
T Consensus 121 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~~~~vViDEah~~~~~~ 199 (414)
T 3eiq_A 121 AQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR-YLSPKYIKMFVLDEADEMLSRG 199 (414)
T ss_dssp HHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHT-SSCSTTCCEEEECSHHHHHHTT
T ss_pred HHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcC-CcccccCcEEEEECHHHhhccC
Confidence 999999999999888999999999988877766665 77899999999999999874 4678889999999999999999
Q ss_pred cHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhh
Q 007481 161 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240 (602)
Q Consensus 161 f~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~ 240 (602)
|...+..++..++...|+++||||+++.+..+...++..|..+...........+.+.+..+.. ...+...+..++..
T Consensus 200 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 277 (414)
T 3eiq_A 200 FKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVER--EEWKLDTLCDLYET 277 (414)
T ss_dssp THHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSS--STTHHHHHHHHHHS
T ss_pred cHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeCh--HHhHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999888877666666677776665543 33456677777777
Q ss_pred cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCC
Q 007481 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC 320 (602)
Q Consensus 241 ~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~ 320 (602)
...+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++||+|++
T Consensus 278 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~ 357 (414)
T 3eiq_A 278 LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 357 (414)
T ss_dssp SCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSC
T ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCC
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcchhh
Q 007481 321 PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSR 369 (602)
Q Consensus 321 p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~~~~ 369 (602)
|++...|+||+||+||.|+.|.+++|+++.+...++.+.+.++..+...
T Consensus 358 p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (414)
T 3eiq_A 358 PTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEM 406 (414)
T ss_dssp CSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEEC
T ss_pred CCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCcccc
Confidence 9999999999999999999999999999999999999998887766654
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=4.8e-54 Score=457.26 Aligned_cols=360 Identities=32% Similarity=0.558 Sum_probs=315.0
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+|+|++.++++|..+||..|+|+|.++++.++.|+++++.+|||+|||++|++|++..+.... .+.++||||||++|
T Consensus 12 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~---~~~~~lil~P~~~L 88 (391)
T 1xti_A 12 DFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT---GQVSVLVMCHTREL 88 (391)
T ss_dssp GGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCT---TCCCEEEECSCHHH
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccC---CCeeEEEECCCHHH
Confidence 689999999999999999999999999999999999999999999999999999998875432 34579999999999
Q ss_pred HHHHHHHHHHHhhcC-CceEEEEECCCCHHHHHHHHc-CCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccC
Q 007481 82 AVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 159 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~-~i~v~~~~g~~~~~~~~~~l~-~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~ 159 (602)
+.|+++.+..+.... ++++..++|+.........+. ..++|+|+||++|.+++.+. .+.+..+++|||||||++.++
T Consensus 89 ~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~vViDEaH~~~~~ 167 (391)
T 1xti_A 89 AFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK-SLNLKHIKHFILDECDKMLEQ 167 (391)
T ss_dssp HHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT-SSCCTTCSEEEECSHHHHTSS
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcC-CccccccCEEEEeCHHHHhhc
Confidence 999999999998775 789999999988776665554 45799999999999988774 467889999999999999874
Q ss_pred -CcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCC-CCCCCceeeeeeechhhhhhHHHHHHHH
Q 007481 160 -GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSA-KRPSTLTEEVVRIRRMREVNQEAVLLSL 237 (602)
Q Consensus 160 -gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~k~~~l~~l 237 (602)
+|...+..++...+...|++++|||+++.+..+...++..|..+...... .....+.+.+..+. ...+...+..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~ 244 (391)
T 1xti_A 168 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLK---DNEKNRKLFDL 244 (391)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECC---GGGHHHHHHHH
T ss_pred cchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcC---chhHHHHHHHH
Confidence 78888899999999999999999999999999999999999887765433 23344555555443 33455566667
Q ss_pred hhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEE
Q 007481 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN 317 (602)
Q Consensus 238 ~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~ 317 (602)
+....++++||||+++..++.++..|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 245 l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~ 324 (391)
T 1xti_A 245 LDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN 324 (391)
T ss_dssp HHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEE
T ss_pred HHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEE
Confidence 77677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHhhhcccCCCcceEEEEEecC-cHHHHHHHHHHhcCcchh
Q 007481 318 YACPRDLTSYVHRVGRTARAGREGYAVTFVTDN-DRSLLKAIAKRAGSKLKS 368 (602)
Q Consensus 318 ~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~-d~~~l~~i~~~~~~~~~~ 368 (602)
|++|+|...|+||+||+||.|+.|.+++|+++. +..++..+.+.++..+..
T Consensus 325 ~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (391)
T 1xti_A 325 YDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISE 376 (391)
T ss_dssp SSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEE
T ss_pred eCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhh
Confidence 999999999999999999999999999999876 557788888887766654
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.8e-54 Score=463.53 Aligned_cols=360 Identities=29% Similarity=0.461 Sum_probs=315.2
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 79 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g--~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr 79 (602)
+|+|++.++++|..+||..|+|+|.++|+.++.+ +++++.+|||||||++|++|+++.+.... .++++|||+||+
T Consensus 29 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~---~~~~~lil~P~~ 105 (412)
T 3fht_A 29 ELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN---KYPQCLCLSPTY 105 (412)
T ss_dssp GGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS---CSCCEEEECSSH
T ss_pred hCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC---CCCCEEEECCCH
Confidence 5899999999999999999999999999999997 99999999999999999999998875442 345799999999
Q ss_pred HHHHHHHHHHHHHhhcC-CceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccccc
Q 007481 80 ELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 158 (602)
Q Consensus 80 ~La~Q~~~~~~~l~~~~-~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~ 158 (602)
+|+.|+++.+..+.... ++.+....++...... ....++|+|+||++|.+++.+...+.+.++++|||||||++.+
T Consensus 106 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~ 182 (412)
T 3fht_A 106 ELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIA 182 (412)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHS
T ss_pred HHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhh
Confidence 99999999999998764 6788888887654322 2456799999999999999776667788999999999999987
Q ss_pred -CCcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHH
Q 007481 159 -LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 237 (602)
Q Consensus 159 -~gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l 237 (602)
.+|...+..+...++...|++++|||+++.+..+....+..|..+...........+.+.++.+.. ...+...+..+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~ 260 (412)
T 3fht_A 183 TQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSS--RDEKFQALCNL 260 (412)
T ss_dssp TTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSS--HHHHHHHHHHH
T ss_pred cCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCC--hHHHHHHHHHH
Confidence 678889999999999999999999999999999999999999888776666566666666665543 23455667777
Q ss_pred hhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEE
Q 007481 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN 317 (602)
Q Consensus 238 ~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~ 317 (602)
+.....+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 261 ~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~ 340 (412)
T 3fht_A 261 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 340 (412)
T ss_dssp HHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEE
T ss_pred HhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEE
Confidence 77777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------ChhhHHHHhhhcccCCCcceEEEEEecCc-HHHHHHHHHHhcCcchhh
Q 007481 318 YACPR------DLTSYVHRVGRTARAGREGYAVTFVTDND-RSLLKAIAKRAGSKLKSR 369 (602)
Q Consensus 318 ~d~p~------s~~~yiQriGRa~R~g~~g~~i~l~~~~d-~~~l~~i~~~~~~~~~~~ 369 (602)
||+|+ +..+|+||+||+||.|..|.+++|+++.+ ...+..+.+.++..+...
T Consensus 341 ~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 399 (412)
T 3fht_A 341 FDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERL 399 (412)
T ss_dssp SSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC
T ss_pred ECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccC
Confidence 99995 66899999999999999999999998764 778888888877666543
No 8
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.4e-54 Score=485.86 Aligned_cols=366 Identities=29% Similarity=0.482 Sum_probs=305.6
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCCEEEEcCCCchHHHHHHHHHHHHHHcCCC-CCCCcEEEEEcChHH
Q 007481 4 NLSRPLLRACEALGYSKPTPIQAACIPLAL--TGRDICGSAITGSGKTAAFALPTLERLLYRPK-RIPAIRVLILTPTRE 80 (602)
Q Consensus 4 ~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l--~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~-~~~~~~vLiL~Ptr~ 80 (602)
.|+++++++|..+||..|||+|.++|+.++ .|+|+|+.||||||||++|++|+++.+..... ...++++|||+||++
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 27 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 106 (579)
T ss_dssp SSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHH
Confidence 499999999999999999999999999999 78999999999999999999999999877542 123568999999999
Q ss_pred HHHHHHHHHHHHhhc----CCceEEEEECCCCHHHHHHHHc-CCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccc
Q 007481 81 LAVQVHSMIEKIAQF----TDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 155 (602)
Q Consensus 81 La~Q~~~~~~~l~~~----~~i~v~~~~g~~~~~~~~~~l~-~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~ 155 (602)
|+.|+++.+..+... ..+.+..++|+.....+...+. ..++|+|+||++|++++.......+..+++|||||||+
T Consensus 107 La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 186 (579)
T 3sqw_A 107 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 186 (579)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHH
Confidence 999999999998643 4577888999988777766664 47899999999999998764334578899999999999
Q ss_pred cccCCcHHHHHHHHHhCCC-------CcceeeeeccCChhHHHHHHHhcCCCeEEecCCCC----CCCCCceeeeeeech
Q 007481 156 LLELGFSAEIHELVRLCPK-------RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSA----KRPSTLTEEVVRIRR 224 (602)
Q Consensus 156 l~~~gf~~~i~~i~~~~~~-------~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~----~~~~~l~~~~~~~~~ 224 (602)
+++++|...+..|+..++. .+|+++||||+++.+..++..++..|..+.+.... .....+.+.++....
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 266 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecc
Confidence 9999999999888776543 67999999999999999998888887766543321 112233444433332
Q ss_pred hhhh--hHHHHHHHHhh-hcCCCeEEEEeCcHHHHHHHHHHHhhc---CCceeeccCCCCHHHHHHHHHHHhcCCceEEE
Q 007481 225 MREV--NQEAVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLA---ALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298 (602)
Q Consensus 225 ~~~~--~k~~~l~~l~~-~~~~~kvIIF~~s~~~a~~l~~~L~~~---g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLV 298 (602)
.... .....+...+. ...+.++||||+|+..++.++..|... ++.+..+||+|++.+|..+++.|++|+.+|||
T Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLV 346 (579)
T 3sqw_A 267 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 346 (579)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEE
Confidence 1111 11122222222 255679999999999999999999887 89999999999999999999999999999999
Q ss_pred EcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcchhh
Q 007481 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSR 369 (602)
Q Consensus 299 aT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~~~~ 369 (602)
||+++++|||+|+|++||+|++|.++..|+||+||+||+|+.|.+++|+++.+..+++.+.+..+..+...
T Consensus 347 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~ 417 (579)
T 3sqw_A 347 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQ 417 (579)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEE
T ss_pred EcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999998877666543
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=7.5e-54 Score=455.52 Aligned_cols=353 Identities=33% Similarity=0.510 Sum_probs=309.4
Q ss_pred CCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcCh
Q 007481 1 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 78 (602)
Q Consensus 1 ~~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g--~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Pt 78 (602)
.+|||++.++++|..+||..|+|+|.++++.++.+ +++++++|||||||++|++|++..+.... .+.++|||+||
T Consensus 8 ~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~---~~~~~lil~P~ 84 (395)
T 3pey_A 8 DELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED---ASPQAICLAPS 84 (395)
T ss_dssp TTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC---CSCCEEEECSS
T ss_pred hhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC---CCccEEEECCC
Confidence 36899999999999999999999999999999998 99999999999999999999998875432 34579999999
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccccc
Q 007481 79 RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 158 (602)
Q Consensus 79 r~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~ 158 (602)
++|+.|+++.+..+..+.++.+..++++..... ....++|+|+||++|.+++.+. ...+..+++|||||||++.+
T Consensus 85 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~iIiDEah~~~~ 159 (395)
T 3pey_A 85 RELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRK-LMQLQKIKIFVLDEADNMLD 159 (395)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTT-CBCCTTCCEEEEETHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcC-CcccccCCEEEEEChhhhcC
Confidence 999999999999999888888888887754322 2346899999999999998774 56788999999999999987
Q ss_pred -CCcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHH
Q 007481 159 -LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 237 (602)
Q Consensus 159 -~gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l 237 (602)
.++...+..+...++...|++++|||+++.+..+....+..+..+...........+.+.+..+.. ...+...+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~ 237 (395)
T 3pey_A 160 QQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKN--EADKFDVLTEL 237 (395)
T ss_dssp STTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSS--HHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCc--hHHHHHHHHHH
Confidence 788899999999999999999999999999999999998888877766555555556655555432 34455666667
Q ss_pred hhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEE
Q 007481 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN 317 (602)
Q Consensus 238 ~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~ 317 (602)
+.....+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 238 ~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~ 317 (395)
T 3pey_A 238 YGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVN 317 (395)
T ss_dssp HTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEE
T ss_pred HHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEE
Confidence 77677789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------ChhhHHHHhhhcccCCCcceEEEEEecC-cHHHHHHHHHHhc
Q 007481 318 YACPR------DLTSYVHRVGRTARAGREGYAVTFVTDN-DRSLLKAIAKRAG 363 (602)
Q Consensus 318 ~d~p~------s~~~yiQriGRa~R~g~~g~~i~l~~~~-d~~~l~~i~~~~~ 363 (602)
||+|+ |+..|+||+||+||.|..|.+++|+.+. +..++..+.+.++
T Consensus 318 ~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 318 YDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp SSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 99999 9999999999999999999999999875 4567777777765
No 10
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.7e-54 Score=482.21 Aligned_cols=365 Identities=30% Similarity=0.485 Sum_probs=303.9
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCC-CCCcEEEEEcChHH
Q 007481 4 NLSRPLLRACEALGYSKPTPIQAACIPLAL--TGRDICGSAITGSGKTAAFALPTLERLLYRPKR-IPAIRVLILTPTRE 80 (602)
Q Consensus 4 ~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l--~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~-~~~~~vLiL~Ptr~ 80 (602)
.|+++++++|..+||..|||+|.++|+.++ .++|+|++||||||||++|++|+++.+...... ..++++|||+||++
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHH
Confidence 499999999999999999999999999999 678999999999999999999999998875421 23467999999999
Q ss_pred HHHHHHHHHHHHhhc----CCceEEEEECCCCHHHHHHHH-cCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccc
Q 007481 81 LAVQVHSMIEKIAQF----TDIRCCLVVGGLSTKMQETAL-RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 155 (602)
Q Consensus 81 La~Q~~~~~~~l~~~----~~i~v~~~~g~~~~~~~~~~l-~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~ 155 (602)
|+.|+++.+..+... ..+.+..++|+.....+...+ ...++|+|+||++|++++.+.....+..+++|||||||+
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 999999999997543 356788899998877776665 457899999999999998764334578899999999999
Q ss_pred cccCCcHHHHHHHHHhCC-------CCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCC----CCCCceeeeeeech
Q 007481 156 LLELGFSAEIHELVRLCP-------KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK----RPSTLTEEVVRIRR 224 (602)
Q Consensus 156 l~~~gf~~~i~~i~~~~~-------~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~----~~~~l~~~~~~~~~ 224 (602)
+++++|...+..++..++ ...|+++||||+++.+..++..++..|..+....... ....+.+.++....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 999999999988877653 3678999999999999999888888876665432211 22233344433322
Q ss_pred hhhh--hHHHHHHHHh-hhcCCCeEEEEeCcHHHHHHHHHHHhhc---CCceeeccCCCCHHHHHHHHHHHhcCCceEEE
Q 007481 225 MREV--NQEAVLLSLC-SKTFTSKVIIFSGTKQAAHRLKILFGLA---ALKAAELHGNLTQAQRLEALELFRKQHVDFLI 298 (602)
Q Consensus 225 ~~~~--~k~~~l~~l~-~~~~~~kvIIF~~s~~~a~~l~~~L~~~---g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLV 298 (602)
.... .....+...+ ....+.++||||+|+..++.++..|... ++.+..+||+|++.+|..+++.|++|+.+|||
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 1111 1111222222 2355779999999999999999999887 89999999999999999999999999999999
Q ss_pred EcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcchh
Q 007481 299 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 368 (602)
Q Consensus 299 aT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~~~ 368 (602)
||+++++|||+|+|++||+|++|.++..|+||+|||||+|+.|.+++|+.+.+...++.+.+..+..+..
T Consensus 398 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~ 467 (563)
T 3i5x_A 398 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAK 467 (563)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCE
T ss_pred EcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999887766554
No 11
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4e-53 Score=445.44 Aligned_cols=353 Identities=36% Similarity=0.583 Sum_probs=311.4
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 80 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g-~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~ 80 (602)
+|+|+++++++|..+||..|+|+|.++|+.++.+ +++++.+|||||||++|++|++..+... .+.++|||+|+++
T Consensus 10 ~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~----~~~~~lil~P~~~ 85 (367)
T 1hv8_A 10 ELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN----NGIEAIILTPTRE 85 (367)
T ss_dssp GSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS----SSCCEEEECSCHH
T ss_pred hcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc----CCCcEEEEcCCHH
Confidence 6899999999999999999999999999999998 7999999999999999999998876543 3457999999999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC
Q 007481 81 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 160 (602)
Q Consensus 81 La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g 160 (602)
|+.|+++.+..+....++.+..++|+.....+...+. .++|+|+||++|.+++... .+.+.++++|||||||++.+++
T Consensus 86 L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~-~~~~~~~~~iIiDEah~~~~~~ 163 (367)
T 1hv8_A 86 LAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRG-TLNLKNVKYFILDEADEMLNMG 163 (367)
T ss_dssp HHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTT-CSCTTSCCEEEEETHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcC-CcccccCCEEEEeCchHhhhhc
Confidence 9999999999998888899999999988776665554 6899999999999998864 4678899999999999999999
Q ss_pred cHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhh
Q 007481 161 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 240 (602)
Q Consensus 161 f~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~ 240 (602)
|...+..++..++...+++++|||+++........++..+..+.... ...+.+.++.+. ...+...+..++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~l~~~l~- 235 (367)
T 1hv8_A 164 FIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVN---ENERFEALCRLLK- 235 (367)
T ss_dssp THHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECC---GGGHHHHHHHHHC-
T ss_pred hHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeC---hHHHHHHHHHHHh-
Confidence 99999999999999999999999999998888888887766554432 224445555443 2344555555554
Q ss_pred cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCC
Q 007481 241 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC 320 (602)
Q Consensus 241 ~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~ 320 (602)
..+.++||||+++..++.++..|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++
T Consensus 236 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~ 315 (367)
T 1hv8_A 236 NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHL 315 (367)
T ss_dssp STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSC
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcchh
Q 007481 321 PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 368 (602)
Q Consensus 321 p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~~~ 368 (602)
|+|+.+|+||+||+||.|+.|.+++++++.+...+..+.+..+.++..
T Consensus 316 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 363 (367)
T 1hv8_A 316 PQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKK 363 (367)
T ss_dssp CSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCC
T ss_pred CCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCce
Confidence 999999999999999999999999999999999999999988776654
No 12
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=4.2e-55 Score=465.64 Aligned_cols=359 Identities=31% Similarity=0.516 Sum_probs=181.7
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+|+|++.++++|..+||..|+|+|.++++.++.|+++++.+|||||||++|++|++..+.... .++++|||+|+++|
T Consensus 25 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~---~~~~~lil~P~~~L 101 (394)
T 1fuu_A 25 DMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV---KAPQALMLAPTREL 101 (394)
T ss_dssp GGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTC---CSCCEEEECSSHHH
T ss_pred hcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccC---CCCCEEEEcCCHHH
Confidence 589999999999999999999999999999999999999999999999999999998875432 34579999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCc
Q 007481 82 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF 161 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf 161 (602)
+.|+++.+..+....++.+..++|+.........+. .++|+|+||++|.+.+.+. .+.+..+++||+||||++.+++|
T Consensus 102 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~-~~~~~~~~~vIiDEah~~~~~~~ 179 (394)
T 1fuu_A 102 ALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRR-RFRTDKIKMFILDEADEMLSSGF 179 (394)
T ss_dssp HHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEETHHHHHHTTC
T ss_pred HHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhC-CcchhhCcEEEEEChHHhhCCCc
Confidence 999999999998888999999999988766555544 6899999999999998874 46688899999999999999999
Q ss_pred HHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhhc
Q 007481 162 SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241 (602)
Q Consensus 162 ~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~ 241 (602)
...+..++..++...|++++|||+++.+.++...++..|..+...........+.+.+..+.. ...+...+..++...
T Consensus 180 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 257 (394)
T 1fuu_A 180 KEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEE--EEYKYECLTDLYDSI 257 (394)
T ss_dssp HHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC----------------------------------
T ss_pred HHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCc--hhhHHHHHHHHHhcC
Confidence 999999999999999999999999999999998899999888776555444455554444332 122344455556555
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCC
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACP 321 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p 321 (602)
..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|
T Consensus 258 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p 337 (394)
T 1fuu_A 258 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLP 337 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcch
Q 007481 322 RDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 367 (602)
Q Consensus 322 ~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~~ 367 (602)
++...|+||+||+||.|+.|.+++|+++.+...+..+.+.++..+.
T Consensus 338 ~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 383 (394)
T 1fuu_A 338 ANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIE 383 (394)
T ss_dssp ----------------------------------------------
T ss_pred CCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCccc
Confidence 9999999999999999999999999999998888888776654443
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.6e-55 Score=482.57 Aligned_cols=358 Identities=29% Similarity=0.466 Sum_probs=174.9
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 79 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g--~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr 79 (602)
+++|++.++++|..+||..|||+|.++||.++.+ +++|++||||||||++|++|+++.+.... .++++|||+||+
T Consensus 96 ~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~---~~~~~lil~Pt~ 172 (479)
T 3fmp_B 96 ELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN---KYPQCLCLSPTY 172 (479)
T ss_dssp GGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS---CSCCEEEECSSH
T ss_pred HcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC---CCCcEEEEeChH
Confidence 5799999999999999999999999999999997 99999999999999999999998775432 345799999999
Q ss_pred HHHHHHHHHHHHHhhcC-CceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccccc
Q 007481 80 ELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 158 (602)
Q Consensus 80 ~La~Q~~~~~~~l~~~~-~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~ 158 (602)
+|+.|+++.+..+..+. ++.+...+++...... ....++|+|+||++|++++.+...+.+.++++|||||||++++
T Consensus 173 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~ 249 (479)
T 3fmp_B 173 ELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIA 249 (479)
T ss_dssp HHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHT
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhh
Confidence 99999999999998764 6777777776543221 2345799999999999999876667889999999999999987
Q ss_pred -CCcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHH
Q 007481 159 -LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 237 (602)
Q Consensus 159 -~gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l 237 (602)
.+|...+..+...++..+|+++||||++..+..+....+..|..+...........+.+.++.+.. ...+...+..+
T Consensus 250 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~ 327 (479)
T 3fmp_B 250 TQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSS--RDEKFQALCNL 327 (479)
T ss_dssp STTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-------------------------------
T ss_pred cCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCC--HHHHHHHHHHH
Confidence 688899999999999999999999999999999999999999888776665555566666555432 23345556666
Q ss_pred hhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEE
Q 007481 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN 317 (602)
Q Consensus 238 ~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~ 317 (602)
+......++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++||+
T Consensus 328 ~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~ 407 (479)
T 3fmp_B 328 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 407 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEE
Confidence 66666789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------ChhhHHHHhhhcccCCCcceEEEEEecCc-HHHHHHHHHHhcCcch
Q 007481 318 YACPR------DLTSYVHRVGRTARAGREGYAVTFVTDND-RSLLKAIAKRAGSKLK 367 (602)
Q Consensus 318 ~d~p~------s~~~yiQriGRa~R~g~~g~~i~l~~~~d-~~~l~~i~~~~~~~~~ 367 (602)
||+|. +...|+||+||+||.|+.|.+++|+++.+ ..+++.+.+.++..+.
T Consensus 408 ~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~ 464 (479)
T 3fmp_B 408 FDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIE 464 (479)
T ss_dssp ---------------------------------------------------------
T ss_pred ecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCce
Confidence 99995 56899999999999999999999998765 6777777776654444
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=8.5e-52 Score=430.45 Aligned_cols=334 Identities=38% Similarity=0.600 Sum_probs=289.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHH
Q 007481 5 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 84 (602)
Q Consensus 5 L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q 84 (602)
|++.|.++|..+||..|+|+|.++++.++.|+++++.+|||||||++|++|+++. +.++|||+|+++|+.|
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~---------~~~~liv~P~~~L~~q 71 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL---------GMKSLVVTPTRELTRQ 71 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH---------TCCEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh---------cCCEEEEeCCHHHHHH
Confidence 6899999999999999999999999999999999999999999999999998864 2369999999999999
Q ss_pred HHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHH
Q 007481 85 VHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAE 164 (602)
Q Consensus 85 ~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~ 164 (602)
+++.+..+....++.+..++|+.....+...+. .++|+|+||++|.+++... .+.+..+++||+||||++.+++|...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~-~~~~~~~~~iViDEah~~~~~~~~~~ 149 (337)
T 2z0m_A 72 VASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKG-VIDLSSFEIVIIDEADLMFEMGFIDD 149 (337)
T ss_dssp HHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTT-SCCGGGCSEEEEESHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcC-CcchhhCcEEEEEChHHhhccccHHH
Confidence 999999998888999999999988776666554 4899999999999988763 45678899999999999999999999
Q ss_pred HHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhhcCCC
Q 007481 165 IHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTS 244 (602)
Q Consensus 165 i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~ 244 (602)
+..++...+...+++++|||+++.+......++..+..+... .....+.+.++.+... ... ....+....+.
T Consensus 150 ~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~ 221 (337)
T 2z0m_A 150 IKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDD---WRS--KVQALRENKDK 221 (337)
T ss_dssp HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSS---SHH--HHHHHHTCCCS
T ss_pred HHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChH---HHH--HHHHHHhCCCC
Confidence 999999999999999999999999988888888877665432 2233444555444321 111 12334456678
Q ss_pred eEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCCCCh
Q 007481 245 KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDL 324 (602)
Q Consensus 245 kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~ 324 (602)
++||||+++..++.++..|. .+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+|++|+|+
T Consensus 222 ~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~ 297 (337)
T 2z0m_A 222 GVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDL 297 (337)
T ss_dssp SEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSH
T ss_pred cEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCH
Confidence 99999999999999999887 57899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHh
Q 007481 325 TSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362 (602)
Q Consensus 325 ~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~ 362 (602)
..|+||+||+||.|+.|.+++|+. .+..+++.+.+.+
T Consensus 298 ~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 298 RTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp HHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred HHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 999999999999999999999999 8888888776654
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=4.4e-50 Score=447.66 Aligned_cols=341 Identities=16% Similarity=0.225 Sum_probs=276.1
Q ss_pred CCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHH
Q 007481 2 ELNLSRPLLRACEA-LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 80 (602)
Q Consensus 2 ~l~L~~~ll~~l~~-~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~ 80 (602)
+|++++.+.++|.. +||..|+|+|.++|+.++.|+|+++.+|||+|||++|++|++.. ..++|||+|+++
T Consensus 25 ~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~---------~g~~lVisP~~~ 95 (591)
T 2v1x_A 25 DFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS---------DGFTLVICPLIS 95 (591)
T ss_dssp CSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS---------SSEEEEECSCHH
T ss_pred cCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc---------CCcEEEEeCHHH
Confidence 68999999999988 79999999999999999999999999999999999999999742 347999999999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHH------HcCCCcEEEECcHHHH------HHHHccCCCCCCCcceE
Q 007481 81 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA------LRSMPDIVVATPGRMI------DHLRNSMSVDLDDLAVL 148 (602)
Q Consensus 81 La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~------l~~~~~IvI~Tp~~L~------~~l~~~~~~~l~~l~ll 148 (602)
|+.|+.+.+..+ ++.+..++|+.+....... ....++|+|+||++|. +.+.+ ...+..+++|
T Consensus 96 L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~--~~~~~~i~~i 169 (591)
T 2v1x_A 96 LMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK--AYEARRFTRI 169 (591)
T ss_dssp HHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH--HHHTTCEEEE
T ss_pred HHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh--hhhccCCcEE
Confidence 999999999886 7888999999876654332 2467899999999874 33333 2346789999
Q ss_pred EEeCccccccCC--cHHHHHH--HHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeech
Q 007481 149 ILDEADRLLELG--FSAEIHE--LVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR 224 (602)
Q Consensus 149 VlDEah~l~~~g--f~~~i~~--i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~ 224 (602)
||||||++.+|| |...+.. ++....+..++++||||+++.+...+...+..+....+.....+ +++...+.....
T Consensus 170 ViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r-~nl~~~v~~~~~ 248 (591)
T 2v1x_A 170 AVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNR-PNLYYEVRQKPS 248 (591)
T ss_dssp EEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCC-TTEEEEEEECCS
T ss_pred EEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCC-cccEEEEEeCCC
Confidence 999999999988 7665544 33333456899999999999887777666554433333222222 233333322211
Q ss_pred hhhhhHHHHHHHHhh-hcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc
Q 007481 225 MREVNQEAVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA 303 (602)
Q Consensus 225 ~~~~~k~~~l~~l~~-~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~ 303 (602)
........+..++. ...+.++||||+|++.++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++
T Consensus 249 -~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~ 327 (591)
T 2v1x_A 249 -NTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAF 327 (591)
T ss_dssp -SHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTS
T ss_pred -cHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechh
Confidence 12223334444443 3357899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHH
Q 007481 304 ARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 359 (602)
Q Consensus 304 ~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~ 359 (602)
++|||+|+|++||||++|.|...|+||+||+||.|..|.|++|+++.|...+..+.
T Consensus 328 ~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 328 GMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp CTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred hcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988877665553
No 16
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=3.2e-50 Score=432.23 Aligned_cols=342 Identities=18% Similarity=0.237 Sum_probs=271.3
Q ss_pred HHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHH
Q 007481 8 PLLRACEA-LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH 86 (602)
Q Consensus 8 ~ll~~l~~-~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~ 86 (602)
.+.+.+.. +|| .|||+|.++|+.++.|+|+++++|||||||++|++|++..+. .++++|||+||++|+.|++
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~------~~~~~lil~Pt~~L~~q~~ 81 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR------KGKKSALVFPTVTLVKQTL 81 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT------TTCCEEEEESSHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc------CCCEEEEEECCHHHHHHHH
Confidence 34455544 576 799999999999999999999999999999999888887651 3457999999999999999
Q ss_pred HHHHHHhhcCCceEEEEECCCCH---HHHHHHHcCC-CcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccccc----
Q 007481 87 SMIEKIAQFTDIRCCLVVGGLST---KMQETALRSM-PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE---- 158 (602)
Q Consensus 87 ~~~~~l~~~~~i~v~~~~g~~~~---~~~~~~l~~~-~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~---- 158 (602)
+.+..++. .++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||++.+
T Consensus 82 ~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~~~~~~ 157 (414)
T 3oiy_A 82 ERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRN 157 (414)
T ss_dssp HHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCCSEEEESCHHHHHHCHHH
T ss_pred HHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccccEEEEeChHhhhhccch
Confidence 99999887 78999999999987 4555556555 99999999999988874 5567899999999987653
Q ss_pred -------CCcHHH-HHHHHHhCC-----------CCcceeeeecc-CChhHH-HHHHHhcCCCeEEecCCCCCCCCCcee
Q 007481 159 -------LGFSAE-IHELVRLCP-----------KRRQTMLFSAT-LTEDVD-ELIKLSLTKPLRLSADPSAKRPSTLTE 217 (602)
Q Consensus 159 -------~gf~~~-i~~i~~~~~-----------~~~q~il~SAT-~~~~~~-~l~~~~l~~p~~~~~~~~~~~~~~l~~ 217 (602)
+||... +..++..++ ...|++++||| ++..+. .+....+. +.+.........+.+
T Consensus 158 ~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~ 233 (414)
T 3oiy_A 158 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITH 233 (414)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEE
T ss_pred hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchh
Confidence 778777 788888776 78999999999 554433 22222222 222222333445555
Q ss_pred eeeeechhhhhhHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCcee-eccCCCCHHHHHHHHHHHhcCCceE
Q 007481 218 EVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAA-ELHGNLTQAQRLEALELFRKQHVDF 296 (602)
Q Consensus 218 ~~~~~~~~~~~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~-~lhg~~~~~eR~~il~~F~~g~~~i 296 (602)
.++.+ .+...+..++.. .+.++||||+++..++.++..|...|+.+. .+||. +|. ++.|++|+++|
T Consensus 234 ~~~~~------~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~v 300 (414)
T 3oiy_A 234 VRISS------RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINI 300 (414)
T ss_dssp EEESS------CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSE
T ss_pred eeecc------CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeE
Confidence 55443 123334444444 458999999999999999999999999998 99985 444 99999999999
Q ss_pred EEE----cCccccccCcCC-ccEEEEcCCC--CChhhHHHHhhhcccCC----CcceEEEEEecCcHHHHHHHHHHhc--
Q 007481 297 LIA----TDVAARGLDIIG-VQTVINYACP--RDLTSYVHRVGRTARAG----REGYAVTFVTDNDRSLLKAIAKRAG-- 363 (602)
Q Consensus 297 LVa----T~~~~~GlDip~-v~~VI~~d~p--~s~~~yiQriGRa~R~g----~~g~~i~l~~~~d~~~l~~i~~~~~-- 363 (602)
||| |+++++|||+|+ |++||+||+| .+..+|+||+||+||.| +.|.+++|+ .+...+..+.+..+
T Consensus 301 Lvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~~~ 378 (414)
T 3oiy_A 301 LIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLI 378 (414)
T ss_dssp EEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHH
T ss_pred EEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhccc
Confidence 999 999999999999 9999999999 99999999999999987 589999999 77888888887776
Q ss_pred CcchhhhhhhhhhHHH
Q 007481 364 SKLKSRIVAEQSITKW 379 (602)
Q Consensus 364 ~~~~~~~~~~~~~~~~ 379 (602)
.++....++...+..+
T Consensus 379 ~~~~~~~~~~~~~~~~ 394 (414)
T 3oiy_A 379 AEEEIIEEAEANWKEL 394 (414)
T ss_dssp HCCCEEEGGGCCHHHH
T ss_pred ccccccccccccHHHH
Confidence 5555555554444333
No 17
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-50 Score=446.12 Aligned_cols=356 Identities=28% Similarity=0.457 Sum_probs=264.1
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHH
Q 007481 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 80 (602)
Q Consensus 3 l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g--~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~ 80 (602)
.+|+++++++|...||..|+|+|.++|+.++.| +++++.+|||||||++|++|++..+.... .+.++|||+|+++
T Consensus 124 ~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~---~~~~vLvl~P~~~ 200 (508)
T 3fho_A 124 XXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV---PKPQAICLAPSRE 200 (508)
T ss_dssp ---------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC---CSCCEEEECSCHH
T ss_pred cccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC---CCceEEEEECcHH
Confidence 468889999999999999999999999999998 99999999999999999999998875542 3457999999999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccccc-C
Q 007481 81 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-L 159 (602)
Q Consensus 81 La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~-~ 159 (602)
|+.|+++.+..+....++.+...+++.... .....++|+|+||++|.+++... .+.+.++++|||||||++.+ .
T Consensus 201 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~l~~~-~~~~~~~~lIIiDEaH~~~~~~ 275 (508)
T 3fho_A 201 LARQIMDVVTEMGKYTEVKTAFGIKDSVPK----GAKIDAQIVIGTPGTVMDLMKRR-QLDARDIKVFVLDEADNMLDQQ 275 (508)
T ss_dssp HHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTT-CSCCTTCCEEEECCHHHHTTC-
T ss_pred HHHHHHHHHHHhCCccCeeEEEEeCCcccc----cccCCCCEEEECHHHHHHHHHcC-CccccCCCEEEEechhhhcccC
Confidence 999999999999877777766666654322 22447899999999999988874 56788999999999999987 6
Q ss_pred CcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhh
Q 007481 160 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 239 (602)
Q Consensus 160 gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~ 239 (602)
+|...+..+...++...|++++|||+++.+..+...++..+..+...........+.+.+..+.. ...+...+..++.
T Consensus 276 ~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~k~~~l~~ll~ 353 (508)
T 3fho_A 276 GLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQS--EEHKYNVLVELYG 353 (508)
T ss_dssp -CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC----CHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCc--hHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999988887766555555555555555432 2345556666777
Q ss_pred hcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcC
Q 007481 240 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA 319 (602)
Q Consensus 240 ~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d 319 (602)
....+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 354 ~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~ 433 (508)
T 3fho_A 354 LLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYD 433 (508)
T ss_dssp ---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC--
T ss_pred hcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEEC
Confidence 66778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC------CChhhHHHHhhhcccCCCcceEEEEEec-CcHHHHHHHHHHhcCcchh
Q 007481 320 CP------RDLTSYVHRVGRTARAGREGYAVTFVTD-NDRSLLKAIAKRAGSKLKS 368 (602)
Q Consensus 320 ~p------~s~~~yiQriGRa~R~g~~g~~i~l~~~-~d~~~l~~i~~~~~~~~~~ 368 (602)
+| .|...|+||+||+||.|+.|.+++|+.+ .+...+..+.+.++..+..
T Consensus 434 ~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~ 489 (508)
T 3fho_A 434 MPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITR 489 (508)
T ss_dssp --CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC-
T ss_pred CCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCccc
Confidence 99 7899999999999999999999999985 5667788888877666554
No 18
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2.9e-48 Score=428.31 Aligned_cols=338 Identities=20% Similarity=0.279 Sum_probs=273.6
Q ss_pred CCCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChH
Q 007481 1 MELNLSRPLLRACEA-LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 79 (602)
Q Consensus 1 ~~l~L~~~ll~~l~~-~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr 79 (602)
.+|+|++.+.+.|.+ +||..|+|+|.++|+.++.|+|+++.+|||||||++|++|++.. ...+|||+|++
T Consensus 5 e~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---------~g~~lvi~P~~ 75 (523)
T 1oyw_A 5 EVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---------NGLTVVVSPLI 75 (523)
T ss_dssp CCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---------SSEEEEECSCH
T ss_pred hhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh---------CCCEEEECChH
Confidence 368999999999998 89999999999999999999999999999999999999999742 23699999999
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHH----HHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccc
Q 007481 80 ELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE----TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 155 (602)
Q Consensus 80 ~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~----~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~ 155 (602)
+|+.|+.+.+..+ ++.+..++++.+..... ....+.++|+|+||++|....... .+...++++|||||||+
T Consensus 76 aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~-~l~~~~~~~vViDEaH~ 150 (523)
T 1oyw_A 76 SLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLE-HLAHWNPVLLAVDEAHC 150 (523)
T ss_dssp HHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHH-HHTTSCEEEEEESSGGG
T ss_pred HHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHH-HHhhCCCCEEEEeCccc
Confidence 9999999988875 77888888887765432 223466899999999995321110 12346789999999999
Q ss_pred cccCC--cHHHHHH---HHHhCCCCcceeeeeccCChhHHHHHH--HhcCCCeEEecCCCCCCCCCceeeeeeechhhhh
Q 007481 156 LLELG--FSAEIHE---LVRLCPKRRQTMLFSATLTEDVDELIK--LSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREV 228 (602)
Q Consensus 156 l~~~g--f~~~i~~---i~~~~~~~~q~il~SAT~~~~~~~l~~--~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 228 (602)
+.++| |+..+.. +...+| ..+++++|||+++.+...+. +.+..|..+... ..+ +++...+.. ..
T Consensus 151 i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~--~~r-~~l~~~v~~-----~~ 221 (523)
T 1oyw_A 151 ISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQISS--FDR-PNIRYMLME-----KF 221 (523)
T ss_dssp GCTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECC--CCC-TTEEEEEEE-----CS
T ss_pred cCcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCC--CCC-CceEEEEEe-----CC
Confidence 99988 6555543 344454 58899999999987655332 334555544322 112 233322222 12
Q ss_pred hHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccC
Q 007481 229 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 308 (602)
Q Consensus 229 ~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlD 308 (602)
.+...+..++....+.++||||+|++.++.++..|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|||
T Consensus 222 ~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD 301 (523)
T 1oyw_A 222 KPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGIN 301 (523)
T ss_dssp SHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTC
T ss_pred CHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCC
Confidence 33444555666666789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHH
Q 007481 309 IIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 361 (602)
Q Consensus 309 ip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~ 361 (602)
+|++++||||++|.|..+|+||+||+||.|..|.+++|+++.|...++.+...
T Consensus 302 ~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 302 KPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp CTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHT
T ss_pred ccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999988877766543
No 19
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3.3e-47 Score=423.33 Aligned_cols=337 Identities=17% Similarity=0.181 Sum_probs=204.5
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhc
Q 007481 16 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 95 (602)
Q Consensus 16 ~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~ 95 (602)
++..+|||||.++|+.++.|+|+++++|||||||++|++|+++.+...+. ..+.++|||+||++|+.||++.+..++..
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA-GRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS-SCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc-cCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 56678999999999999999999999999999999999999998876543 12567999999999999999999999988
Q ss_pred CCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHH-HHHHHh---
Q 007481 96 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI-HELVRL--- 171 (602)
Q Consensus 96 ~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i-~~i~~~--- 171 (602)
.++.+..++|+.+...++..+...++|+|+||++|.+++.......+..+++|||||||++.++++...+ ..++..
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 161 (556)
T ss_dssp GTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHC
T ss_pred cCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhc
Confidence 8999999999987776666777779999999999999998754337899999999999999988754333 222222
Q ss_pred -CCCCcceeeeeccCChh-----------HHHHHHHh------------------cCCCeEEecCCCCCCCCCceee---
Q 007481 172 -CPKRRQTMLFSATLTED-----------VDELIKLS------------------LTKPLRLSADPSAKRPSTLTEE--- 218 (602)
Q Consensus 172 -~~~~~q~il~SAT~~~~-----------~~~l~~~~------------------l~~p~~~~~~~~~~~~~~l~~~--- 218 (602)
..+.+|+++||||++.. +..+.... ...|...........+..+...
T Consensus 162 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (556)
T 4a2p_A 162 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 241 (556)
T ss_dssp C---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred ccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHH
Confidence 14568999999999531 11121111 1111111100000000000000
Q ss_pred -------------------------ee------eech-------------------------------------------
Q 007481 219 -------------------------VV------RIRR------------------------------------------- 224 (602)
Q Consensus 219 -------------------------~~------~~~~------------------------------------------- 224 (602)
+- ++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (556)
T 4a2p_A 242 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 321 (556)
T ss_dssp HHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 00 0000
Q ss_pred ----------------------------------------------hhhhhHHHHHHHHhhh----cCCCeEEEEeCcHH
Q 007481 225 ----------------------------------------------MREVNQEAVLLSLCSK----TFTSKVIIFSGTKQ 254 (602)
Q Consensus 225 ----------------------------------------------~~~~~k~~~l~~l~~~----~~~~kvIIF~~s~~ 254 (602)
.....+...|..++.. ..+.++||||+++.
T Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~ 401 (556)
T 4a2p_A 322 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 401 (556)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHH
Confidence 0001122333333332 45689999999999
Q ss_pred HHHHHHHHHhhc------------CCceeeccCCCCHHHHHHHHHHHhc-CCceEEEEcCccccccCcCCccEEEEcCCC
Q 007481 255 AAHRLKILFGLA------------ALKAAELHGNLTQAQRLEALELFRK-QHVDFLIATDVAARGLDIIGVQTVINYACP 321 (602)
Q Consensus 255 ~a~~l~~~L~~~------------g~~~~~lhg~~~~~eR~~il~~F~~-g~~~iLVaT~~~~~GlDip~v~~VI~~d~p 321 (602)
.++.+...|... |..+..+||+|++.+|..+++.|++ |+++|||||+++++|||+|+|++||+||+|
T Consensus 402 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p 481 (556)
T 4a2p_A 402 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 481 (556)
T ss_dssp HHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCC
T ss_pred HHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCC
Confidence 999999999875 5556677888999999999999999 999999999999999999999999999999
Q ss_pred CChhhHHHHhhhcccCCCcceEEEEEecCcHHHH
Q 007481 322 RDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355 (602)
Q Consensus 322 ~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l 355 (602)
+|+..|+||+|| ||. +.|.+++|++..+....
T Consensus 482 ~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 513 (556)
T 4a2p_A 482 GNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 513 (556)
T ss_dssp SCHHHHHHC----------CCEEEEESCHHHHHH
T ss_pred CCHHHHHHhcCC-CCC-CCceEEEEEeCcchHHH
Confidence 999999999999 997 89999999998876544
No 20
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=7e-47 Score=432.68 Aligned_cols=347 Identities=19% Similarity=0.231 Sum_probs=226.8
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHH
Q 007481 9 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSM 88 (602)
Q Consensus 9 ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~ 88 (602)
+..+|..+||..|+|||.++|+.++.|+|+|+++|||||||++|++|+++.+...+.. .+.++|||+||++|+.||++.
T Consensus 2 ~~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~-~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 2 EVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG-QKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp -----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTT-CCCCEEEECSSHHHHHHHHHH
T ss_pred CCCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccC-CCCeEEEEECCHHHHHHHHHH
Confidence 3467889999999999999999999999999999999999999999999988765432 235799999999999999999
Q ss_pred HHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC-cHHHHHH
Q 007481 89 IEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-FSAEIHE 167 (602)
Q Consensus 89 ~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g-f~~~i~~ 167 (602)
+..++...++.+..++|+.....+...+...++|+|+||++|.+.+.......+..+++|||||||++.+.. +...+..
T Consensus 81 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~ 160 (696)
T 2ykg_A 81 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN 160 (696)
T ss_dssp HHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHH
Confidence 999988789999999999876556666667799999999999999987543368889999999999988654 2233322
Q ss_pred HHHh-----CCCCcceeeeeccCC-------hh-HHHHHHHh---------------------cCCCeEEecCCCCCCCC
Q 007481 168 LVRL-----CPKRRQTMLFSATLT-------ED-VDELIKLS---------------------LTKPLRLSADPSAKRPS 213 (602)
Q Consensus 168 i~~~-----~~~~~q~il~SAT~~-------~~-~~~l~~~~---------------------l~~p~~~~~~~~~~~~~ 213 (602)
++.. .+..++++++|||+. .+ +..+.... ...|.............
T Consensus 161 ~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 240 (696)
T 2ykg_A 161 YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 240 (696)
T ss_dssp HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCC
T ss_pred HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCC
Confidence 3322 246789999999997 11 22222111 11121110000000000
Q ss_pred --------------------------------------------------------------------------------
Q 007481 214 -------------------------------------------------------------------------------- 213 (602)
Q Consensus 214 -------------------------------------------------------------------------------- 213 (602)
T Consensus 241 ~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 320 (696)
T 2ykg_A 241 KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYN 320 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHh
Confidence
Q ss_pred -------------------------------Cceeeeee-------------echhhhhhHHHHHHHHhhhc----CCCe
Q 007481 214 -------------------------------TLTEEVVR-------------IRRMREVNQEAVLLSLCSKT----FTSK 245 (602)
Q Consensus 214 -------------------------------~l~~~~~~-------------~~~~~~~~k~~~l~~l~~~~----~~~k 245 (602)
.+.+.+.. ........+...+..++... .+++
T Consensus 321 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~ 400 (696)
T 2ykg_A 321 DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 400 (696)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCC
T ss_pred HHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCc
Confidence 00000000 00000223444455555443 5679
Q ss_pred EEEEeCcHHHHHHHHHHHhhcC----Cceeec--------cCCCCHHHHHHHHHHHhc-CCceEEEEcCccccccCcCCc
Q 007481 246 VIIFSGTKQAAHRLKILFGLAA----LKAAEL--------HGNLTQAQRLEALELFRK-QHVDFLIATDVAARGLDIIGV 312 (602)
Q Consensus 246 vIIF~~s~~~a~~l~~~L~~~g----~~~~~l--------hg~~~~~eR~~il~~F~~-g~~~iLVaT~~~~~GlDip~v 312 (602)
+||||+++..++.++..|...+ +.+..+ ||+|++.+|.++++.|++ |+.+|||||+++++|||+|+|
T Consensus 401 ~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v 480 (696)
T 2ykg_A 401 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQC 480 (696)
T ss_dssp EEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCC
T ss_pred EEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccC
Confidence 9999999999999999999988 888888 559999999999999998 999999999999999999999
Q ss_pred cEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHH
Q 007481 313 QTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358 (602)
Q Consensus 313 ~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i 358 (602)
++||+||+|+|+.+|+||+|| ||. +.|.+++|++..+......+
T Consensus 481 ~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 481 NLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp SEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 999999999999999999999 997 78999999998877655544
No 21
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.8e-45 Score=411.91 Aligned_cols=322 Identities=20% Similarity=0.209 Sum_probs=252.3
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 15 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 15 ~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
.+|| .|||+|..++|.++.|+ |+.++||+|||++|.+|++...+. +..++||+||++||.|.++++..++.
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~------g~~vlVltptreLA~qd~e~~~~l~~ 149 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT------GKGVHVVTVNEYLASRDAEQMGKIFE 149 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT------SSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHHHHh
Confidence 6899 99999999999999999 999999999999999999855432 34699999999999999999999999
Q ss_pred cCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHH-HHHHHccC-----CCCCCCcceEEEeCccccc-cCC-------
Q 007481 95 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLDDLAVLILDEADRLL-ELG------- 160 (602)
Q Consensus 95 ~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L-~~~l~~~~-----~~~l~~l~llVlDEah~l~-~~g------- 160 (602)
+.++++++++||.+...+. ...+++|+|+||++| +|+|.... .+.+..+.++||||||+|+ +.+
T Consensus 150 ~lgl~v~~i~gg~~~~~r~--~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIis 227 (844)
T 1tf5_A 150 FLGLTVGLNLNSMSKDEKR--EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIIS 227 (844)
T ss_dssp HTTCCEEECCTTSCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEE
T ss_pred hcCCeEEEEeCCCCHHHHH--HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhc
Confidence 9999999999998865433 345689999999999 78877542 3567889999999999988 664
Q ss_pred --------cHHHHHHHHHhCC---------CCccee-----------------eeeccCChhHHHHH-----HHhcC-CC
Q 007481 161 --------FSAEIHELVRLCP---------KRRQTM-----------------LFSATLTEDVDELI-----KLSLT-KP 200 (602)
Q Consensus 161 --------f~~~i~~i~~~~~---------~~~q~i-----------------l~SAT~~~~~~~l~-----~~~l~-~p 200 (602)
|...+..|+..++ +.+|++ +||||++.-+..+. ..++. ++
T Consensus 228 g~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~ 307 (844)
T 1tf5_A 228 GQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDV 307 (844)
T ss_dssp EEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTT
T ss_pred CCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCC
Confidence 6688899998887 467887 99999874333321 11221 11
Q ss_pred eEE-------ecCCCCCC------------------------CC-----Cce----------------------------
Q 007481 201 LRL-------SADPSAKR------------------------PS-----TLT---------------------------- 216 (602)
Q Consensus 201 ~~~-------~~~~~~~~------------------------~~-----~l~---------------------------- 216 (602)
-.+ .++....+ +. .++
T Consensus 308 dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~i 387 (844)
T 1tf5_A 308 DYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNI 387 (844)
T ss_dssp TEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHH
T ss_pred ceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHH
Confidence 111 01100000 00 000
Q ss_pred -------------------eeeeeechhhhhhHHHHHHHHhhh--cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccC
Q 007481 217 -------------------EEVVRIRRMREVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHG 275 (602)
Q Consensus 217 -------------------~~~~~~~~~~~~~k~~~l~~l~~~--~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg 275 (602)
+.++. .....+...+...+.. ..+.++||||+|+..++.|+..|...|+++..|||
T Consensus 388 Y~l~vv~IPtn~p~~r~d~~d~v~---~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg 464 (844)
T 1tf5_A 388 YNMQVVTIPTNRPVVRDDRPDLIY---RTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNA 464 (844)
T ss_dssp HCCCEEECCCSSCCCCEECCCEEE---SSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECS
T ss_pred hCCceEEecCCCCcccccCCcEEE---eCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeC
Confidence 00111 1233445555554432 24678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEEcCccccccCcC--------CccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEE
Q 007481 276 NLTQAQRLEALELFRKQHVDFLIATDVAARGLDII--------GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 347 (602)
Q Consensus 276 ~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip--------~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~ 347 (602)
++++.+|..+.+.|+.| .|+||||+++||+||+ ++.+||||+.|.|...|+||+|||||+|.+|.+++|+
T Consensus 465 ~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~v 542 (844)
T 1tf5_A 465 KNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYL 542 (844)
T ss_dssp SCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred CccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEe
Confidence 99888887666666655 6999999999999999 7889999999999999999999999999999999999
Q ss_pred ecCcH
Q 007481 348 TDNDR 352 (602)
Q Consensus 348 ~~~d~ 352 (602)
+..|.
T Consensus 543 s~eD~ 547 (844)
T 1tf5_A 543 SMEDE 547 (844)
T ss_dssp ETTSS
T ss_pred cHHHH
Confidence 98774
No 22
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.2e-46 Score=416.10 Aligned_cols=337 Identities=19% Similarity=0.174 Sum_probs=232.7
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCc
Q 007481 19 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI 98 (602)
Q Consensus 19 ~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i 98 (602)
-+|||||.++|+.++.|+++|+++|||||||++|++|+++.+...+. ..+.++|||+||++|+.||++.+..++...++
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 81 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC-GQKGKVVFFANQIPVYEQQATVFSRYFERLGY 81 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS-SCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-CCCCEEEEEeCCHHHHHHHHHHHHHHhccCCc
Confidence 36999999999999999999999999999999999999998877543 23567999999999999999999999988899
Q ss_pred eEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCc-HHHHHHHHHhC-----
Q 007481 99 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF-SAEIHELVRLC----- 172 (602)
Q Consensus 99 ~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf-~~~i~~i~~~~----- 172 (602)
.+..++|+.....++..+..+++|+|+||++|.+++.......+..+++|||||||++.+.+. ...+..++...
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~ 161 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESR 161 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcccc
Confidence 999999998777666667778999999999999999875433788899999999999998753 33333333322
Q ss_pred CCCcceeeeeccCChh--------HHHHH--HHhcCCCeEEecCC------CCCCCCCceeeeee---------------
Q 007481 173 PKRRQTMLFSATLTED--------VDELI--KLSLTKPLRLSADP------SAKRPSTLTEEVVR--------------- 221 (602)
Q Consensus 173 ~~~~q~il~SAT~~~~--------~~~l~--~~~l~~p~~~~~~~------~~~~~~~l~~~~~~--------------- 221 (602)
...+|++++|||++.. ...+. ...+..+....... .....+......+.
T Consensus 162 ~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
T 3tbk_A 162 DPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLM 241 (555)
T ss_dssp SCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHH
Confidence 2457999999999642 11111 11122111111100 00000000000000
Q ss_pred ---------------------------------ec---------------------------------------------
Q 007481 222 ---------------------------------IR--------------------------------------------- 223 (602)
Q Consensus 222 ---------------------------------~~--------------------------------------------- 223 (602)
+.
T Consensus 242 ~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 321 (555)
T 3tbk_A 242 KETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQ 321 (555)
T ss_dssp HHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 00
Q ss_pred --------------------------------------------hhhhhhHHHHHHHHhhh----cCCCeEEEEeCcHHH
Q 007481 224 --------------------------------------------RMREVNQEAVLLSLCSK----TFTSKVIIFSGTKQA 255 (602)
Q Consensus 224 --------------------------------------------~~~~~~k~~~l~~l~~~----~~~~kvIIF~~s~~~ 255 (602)
......+...+..++.. ..+.++||||+++..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~ 401 (555)
T 3tbk_A 322 MTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRAL 401 (555)
T ss_dssp HHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHH
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHH
Confidence 00001223333333332 356899999999999
Q ss_pred HHHHHHHHhhcC------------CceeeccCCCCHHHHHHHHHHHhc-CCceEEEEcCccccccCcCCccEEEEcCCCC
Q 007481 256 AHRLKILFGLAA------------LKAAELHGNLTQAQRLEALELFRK-QHVDFLIATDVAARGLDIIGVQTVINYACPR 322 (602)
Q Consensus 256 a~~l~~~L~~~g------------~~~~~lhg~~~~~eR~~il~~F~~-g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~ 322 (602)
++.++..|...+ .....+||+|++.+|..+++.|++ |+++|||||+++++|||+|+|++||+||+|+
T Consensus 402 ~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~ 481 (555)
T 3tbk_A 402 VDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVG 481 (555)
T ss_dssp HHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCS
T ss_pred HHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCC
Confidence 999999998764 344455669999999999999999 9999999999999999999999999999999
Q ss_pred ChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHH
Q 007481 323 DLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 358 (602)
Q Consensus 323 s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i 358 (602)
|+..|+||+|| ||. +.|.+++|+++.+......+
T Consensus 482 s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 482 NVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp SCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 99999999999 997 89999999998877655444
No 23
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.1e-45 Score=428.16 Aligned_cols=339 Identities=17% Similarity=0.185 Sum_probs=212.2
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHh
Q 007481 14 EALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 93 (602)
Q Consensus 14 ~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~ 93 (602)
.-+|+..|+|||.++|+.++.|+++|+++|||||||++|++|++..+...+. ..+.++||||||++|+.||++.+..++
T Consensus 242 ~~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~-~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA-GRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS-SCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred hhcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-cCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 3568999999999999999999999999999999999999999998876542 235679999999999999999999999
Q ss_pred hcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHH-HHHHHh-
Q 007481 94 QFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI-HELVRL- 171 (602)
Q Consensus 94 ~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i-~~i~~~- 171 (602)
...+++++.++|+.+...++..+...++|+|+||++|.+++.......+..+++|||||||++.+.+....+ ..++..
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~ 400 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHH
T ss_pred ccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 888999999999988777677777889999999999999998754337888999999999999887543332 233322
Q ss_pred ---CCCCcceeeeeccCCh-----------hHHHHHHHh------------------cCCCeEEecCCCCCCCCCce---
Q 007481 172 ---CPKRRQTMLFSATLTE-----------DVDELIKLS------------------LTKPLRLSADPSAKRPSTLT--- 216 (602)
Q Consensus 172 ---~~~~~q~il~SAT~~~-----------~~~~l~~~~------------------l~~p~~~~~~~~~~~~~~l~--- 216 (602)
....+|++++|||++. .+..+.... +..|...........+..+.
T Consensus 401 ~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (797)
T 4a2q_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (797)
T ss_dssp HTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHH
T ss_pred hccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHH
Confidence 1556899999999952 222221111 11111110000000000000
Q ss_pred -----------eeee--------------------eech-----------------------------------------
Q 007481 217 -----------EEVV--------------------RIRR----------------------------------------- 224 (602)
Q Consensus 217 -----------~~~~--------------------~~~~----------------------------------------- 224 (602)
..+. ++..
T Consensus 481 ~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 560 (797)
T 4a2q_A 481 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (797)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 0000 0000
Q ss_pred ------------------------------------------------hhhhhHHHHHHHHhhh----cCCCeEEEEeCc
Q 007481 225 ------------------------------------------------MREVNQEAVLLSLCSK----TFTSKVIIFSGT 252 (602)
Q Consensus 225 ------------------------------------------------~~~~~k~~~l~~l~~~----~~~~kvIIF~~s 252 (602)
.....+...|..++.. ..+.++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~ 640 (797)
T 4a2q_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (797)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESS
T ss_pred cccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECc
Confidence 0001122233333332 456899999999
Q ss_pred HHHHHHHHHHHhhc------------CCceeeccCCCCHHHHHHHHHHHhc-CCceEEEEcCccccccCcCCccEEEEcC
Q 007481 253 KQAAHRLKILFGLA------------ALKAAELHGNLTQAQRLEALELFRK-QHVDFLIATDVAARGLDIIGVQTVINYA 319 (602)
Q Consensus 253 ~~~a~~l~~~L~~~------------g~~~~~lhg~~~~~eR~~il~~F~~-g~~~iLVaT~~~~~GlDip~v~~VI~~d 319 (602)
+..++.+..+|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+||
T Consensus 641 ~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd 720 (797)
T 4a2q_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (797)
T ss_dssp HHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEES
T ss_pred HHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeC
Confidence 99999999999763 5666778999999999999999999 9999999999999999999999999999
Q ss_pred CCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHH
Q 007481 320 CPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355 (602)
Q Consensus 320 ~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l 355 (602)
+|+|+..|+||+|| ||. +.|.+++|++..+....
T Consensus 721 ~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee~ 754 (797)
T 4a2q_A 721 YSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 754 (797)
T ss_dssp CCSCHHHHHTC---------CCCEEEEECCHHHHHH
T ss_pred CCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHHH
Confidence 99999999999999 997 89999999988775544
No 24
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.4e-45 Score=435.91 Aligned_cols=322 Identities=18% Similarity=0.245 Sum_probs=259.3
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHh
Q 007481 14 EALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 93 (602)
Q Consensus 14 ~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~ 93 (602)
..+|| .|||+|.++||.++.|+|++++||||||||++|+++++..+. .+.++|||+||++||.|+++.+..|+
T Consensus 73 ~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~------~~~~~Lil~PtreLa~Q~~~~l~~l~ 145 (1104)
T 4ddu_A 73 KKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR------KGKKSALVFPTVTLVKQTLERLQKLA 145 (1104)
T ss_dssp HHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT------TTCCEEEEESSHHHHHHHHHHHHTTS
T ss_pred HhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh------cCCeEEEEechHHHHHHHHHHHHHhh
Confidence 35788 599999999999999999999999999999988888777661 34579999999999999999999987
Q ss_pred hcCCceEEEEECCCCH---HHHHHHHcCC-CcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccc----------c-
Q 007481 94 QFTDIRCCLVVGGLST---KMQETALRSM-PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL----------E- 158 (602)
Q Consensus 94 ~~~~i~v~~~~g~~~~---~~~~~~l~~~-~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~----------~- 158 (602)
..+++++.++|+.+. ..+...+..+ ++|+|+||++|++++.. +.+.++++|||||||++. +
T Consensus 146 -~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~ 221 (1104)
T 4ddu_A 146 -DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNIDTLLMM 221 (1104)
T ss_dssp -CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEESCHHHHTTSSHHHHHHHHT
T ss_pred -CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEEeCCCccccccccchhhhHh
Confidence 778999999999987 5566666665 99999999999998874 556789999999997655 4
Q ss_pred CCcHHH-HHHHHHhCC-----------CCcceeeeecc-CChhHHH-HHHHhcCCCeEEecCCCCCCCCCceeeeeeech
Q 007481 159 LGFSAE-IHELVRLCP-----------KRRQTMLFSAT-LTEDVDE-LIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR 224 (602)
Q Consensus 159 ~gf~~~-i~~i~~~~~-----------~~~q~il~SAT-~~~~~~~-l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~ 224 (602)
+||... +..++..++ ...|+++|||| ++..+.. +....+. +.+.........+.+.++.+.
T Consensus 222 ~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~~- 296 (1104)
T 4ddu_A 222 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISSR- 296 (1104)
T ss_dssp SSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESCC-
T ss_pred cCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEecC-
Confidence 888888 888988887 78999999999 4544432 2222222 233333344556666665542
Q ss_pred hhhhhHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCcee-eccCCCCHHHHHHHHHHHhcCCceEEEE----
Q 007481 225 MREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAA-ELHGNLTQAQRLEALELFRKQHVDFLIA---- 299 (602)
Q Consensus 225 ~~~~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~-~lhg~~~~~eR~~il~~F~~g~~~iLVa---- 299 (602)
+...+..++.. .++++||||+++..++.++..|...|+.+. .+|| +|.+ ++.|++|+++||||
T Consensus 297 -----k~~~L~~ll~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~ 364 (1104)
T 4ddu_A 297 -----SKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAY 364 (1104)
T ss_dssp -----CHHHHHHHHHH-HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTT
T ss_pred -----HHHHHHHHHHh-cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCC
Confidence 23334444444 458999999999999999999999999998 9999 2555 99999999999999
Q ss_pred cCccccccCcCC-ccEEEEcCCCC--------------------------------------------------------
Q 007481 300 TDVAARGLDIIG-VQTVINYACPR-------------------------------------------------------- 322 (602)
Q Consensus 300 T~~~~~GlDip~-v~~VI~~d~p~-------------------------------------------------------- 322 (602)
|+++++|||+|+ |++|||||+|.
T Consensus 365 TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~ 444 (1104)
T 4ddu_A 365 YGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEM 444 (1104)
T ss_dssp HHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhc
Confidence 999999999999 99999999998
Q ss_pred ----------------ChhhHHHHhhhcccCCCc--ceEEEEEecCcHHHHHHHHHHhc
Q 007481 323 ----------------DLTSYVHRVGRTARAGRE--GYAVTFVTDNDRSLLKAIAKRAG 363 (602)
Q Consensus 323 ----------------s~~~yiQriGRa~R~g~~--g~~i~l~~~~d~~~l~~i~~~~~ 363 (602)
+..+|+||+|||||.|.. +.+++++..+|...+..+.+..+
T Consensus 445 ~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 445 FRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp CCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred cceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 778999999999995532 23444444588888988887764
No 25
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-45 Score=430.52 Aligned_cols=339 Identities=19% Similarity=0.208 Sum_probs=267.8
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHH
Q 007481 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 82 (602)
Q Consensus 3 l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La 82 (602)
+++++.+...+...++..|+|+|.++|+.++.|+++|++||||||||++|++|++..+. .+.++||++||++|+
T Consensus 167 ~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~------~g~rvlvl~PtraLa 240 (1108)
T 3l9o_A 167 TPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------NKQRVIYTSPIKALS 240 (1108)
T ss_dssp STTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH------TTCEEEEEESSHHHH
T ss_pred CCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh------cCCeEEEEcCcHHHH
Confidence 45666666667677777899999999999999999999999999999999999998874 345799999999999
Q ss_pred HHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcH
Q 007481 83 VQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS 162 (602)
Q Consensus 83 ~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~ 162 (602)
.|+++.+..+.. .+++++|+.+ +...++|+|+||++|.+++.+. ...+.++++|||||||++.+++|.
T Consensus 241 ~Q~~~~l~~~~~----~VglltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~-~~~l~~l~lVVIDEaH~l~d~~rg 308 (1108)
T 3l9o_A 241 NQKYRELLAEFG----DVGLMTGDIT-------INPDAGCLVMTTEILRSMLYRG-SEVMREVAWVIFDEVHYMRDKERG 308 (1108)
T ss_dssp HHHHHHHHHHTS----SEEEECSSCB-------CCCSCSEEEEEHHHHHHHHHHC-SSHHHHEEEEEEETGGGTTSHHHH
T ss_pred HHHHHHHHHHhC----CccEEeCccc-------cCCCCCEEEeChHHHHHHHHcC-ccccccCCEEEEhhhhhccccchH
Confidence 999999998754 5778888866 3466899999999999999874 345788999999999999999999
Q ss_pred HHHHHHHHhCCCCcceeeeeccCChh--HHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeec---------hhhh----
Q 007481 163 AEIHELVRLCPKRRQTMLFSATLTED--VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR---------RMRE---- 227 (602)
Q Consensus 163 ~~i~~i~~~~~~~~q~il~SAT~~~~--~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~---------~~~~---- 227 (602)
..+..++..++...|+++||||+++. +..++......|..+..... ++..+.+.++... ....
T Consensus 309 ~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~--rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~ 386 (1108)
T 3l9o_A 309 VVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF--RPTPLQHYLFPAHGDGIYLVVDEKSTFREE 386 (1108)
T ss_dssp HHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECC--CSSCEEEEEEETTSSCCEEEEETTTEECHH
T ss_pred HHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC--CcccceEEEeecCCcceeeeeccccchhhh
Confidence 99999999999999999999999875 44555666666665544332 2223322221100 0000
Q ss_pred ---------------------------------------hhHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCC
Q 007481 228 ---------------------------------------VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAAL 268 (602)
Q Consensus 228 ---------------------------------------~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~ 268 (602)
......+...+......++||||+++..|+.++..|...++
T Consensus 387 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~ 466 (1108)
T 3l9o_A 387 NFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDF 466 (1108)
T ss_dssp HHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHH
T ss_pred hHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccC
Confidence 11112233333445567999999999999999998876443
Q ss_pred c---------------------------------------eeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCc
Q 007481 269 K---------------------------------------AAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI 309 (602)
Q Consensus 269 ~---------------------------------------~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDi 309 (602)
. +..+||+|++.+|..+++.|++|.++|||||+++++|||+
T Consensus 467 ~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDi 546 (1108)
T 3l9o_A 467 NSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNM 546 (1108)
T ss_dssp HCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC
T ss_pred CCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCC
Confidence 2 6889999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCC--------ChhhHHHHhhhcccCC--CcceEEEEEecC-cHHHHHHHHHH
Q 007481 310 IGVQTVINYACPR--------DLTSYVHRVGRTARAG--REGYAVTFVTDN-DRSLLKAIAKR 361 (602)
Q Consensus 310 p~v~~VI~~d~p~--------s~~~yiQriGRa~R~g--~~g~~i~l~~~~-d~~~l~~i~~~ 361 (602)
|++++||+++.|+ |+.+|+||+|||||.| ..|.|++++++. +...+..+...
T Consensus 547 P~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~ 609 (1108)
T 3l9o_A 547 PAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKG 609 (1108)
T ss_dssp --CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHC
T ss_pred CCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcC
Confidence 9999999877644 6667999999999999 689999998876 55566666543
No 26
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.7e-44 Score=423.22 Aligned_cols=339 Identities=17% Similarity=0.183 Sum_probs=211.4
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHh
Q 007481 14 EALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 93 (602)
Q Consensus 14 ~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~ 93 (602)
.-.|+..|+|+|.++|+.++.|+++|+++|||||||++|++|+++.+...+. ..+.++|||+||++|+.||++.+..++
T Consensus 242 ~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~-~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA-GRKAKVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS-SCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc-cCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 3457899999999999999999999999999999999999999888765432 125679999999999999999999999
Q ss_pred hcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcH-HHHHHHHHh-
Q 007481 94 QFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS-AEIHELVRL- 171 (602)
Q Consensus 94 ~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~-~~i~~i~~~- 171 (602)
...++.+..++|+.+...+...+...++|+|+||++|.+++.+.....+..+++|||||||++.+.+.. ..+..++..
T Consensus 321 ~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~ 400 (936)
T 4a2w_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (936)
T ss_dssp HTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHH
T ss_pred cccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 888999999999987666555666778999999999999998754336888999999999999877532 223233332
Q ss_pred ---CCCCcceeeeeccCCh-----------hHHHHHHH------------------hcCCCeEEecCCCCCCCCCcee--
Q 007481 172 ---CPKRRQTMLFSATLTE-----------DVDELIKL------------------SLTKPLRLSADPSAKRPSTLTE-- 217 (602)
Q Consensus 172 ---~~~~~q~il~SAT~~~-----------~~~~l~~~------------------~l~~p~~~~~~~~~~~~~~l~~-- 217 (602)
....+|+++||||+.. .+..+... ++..|...........+..+..
T Consensus 401 ~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l 480 (936)
T 4a2w_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (936)
T ss_dssp HTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHH
T ss_pred hccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHH
Confidence 2456899999999952 12221111 1112211111000000000000
Q ss_pred -----------------------------------eeeee---------ch-----------------------------
Q 007481 218 -----------------------------------EVVRI---------RR----------------------------- 224 (602)
Q Consensus 218 -----------------------------------~~~~~---------~~----------------------------- 224 (602)
.+..+ ..
T Consensus 481 ~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~ 560 (936)
T 4a2w_A 481 SNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (936)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 00000 00
Q ss_pred ------------------------------------------------hhhhhHHHHHHHHhhh----cCCCeEEEEeCc
Q 007481 225 ------------------------------------------------MREVNQEAVLLSLCSK----TFTSKVIIFSGT 252 (602)
Q Consensus 225 ------------------------------------------------~~~~~k~~~l~~l~~~----~~~~kvIIF~~s 252 (602)
.....+...|..++.. ..+.++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t 640 (936)
T 4a2w_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (936)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESS
T ss_pred chhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCC
Confidence 0001122223333332 346899999999
Q ss_pred HHHHHHHHHHHhhc------------CCceeeccCCCCHHHHHHHHHHHhc-CCceEEEEcCccccccCcCCccEEEEcC
Q 007481 253 KQAAHRLKILFGLA------------ALKAAELHGNLTQAQRLEALELFRK-QHVDFLIATDVAARGLDIIGVQTVINYA 319 (602)
Q Consensus 253 ~~~a~~l~~~L~~~------------g~~~~~lhg~~~~~eR~~il~~F~~-g~~~iLVaT~~~~~GlDip~v~~VI~~d 319 (602)
+..++.+..+|... |..+..+||+|++.+|.++++.|++ |.++|||||+++++|||+|+|++||+||
T Consensus 641 ~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD 720 (936)
T 4a2w_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (936)
T ss_dssp HHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEES
T ss_pred HHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeC
Confidence 99999999999876 5566677899999999999999999 9999999999999999999999999999
Q ss_pred CCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHH
Q 007481 320 CPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 355 (602)
Q Consensus 320 ~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l 355 (602)
+|+|+..|+||+|| ||. +.|.+++|++..+....
T Consensus 721 ~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ee~ 754 (936)
T 4a2w_A 721 YSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 754 (936)
T ss_dssp CCSCSHHHHCC---------CCCEEEEESCHHHHHH
T ss_pred CCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHHHH
Confidence 99999999999999 997 88999999988776543
No 27
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=7.5e-45 Score=429.77 Aligned_cols=321 Identities=23% Similarity=0.315 Sum_probs=257.2
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHh
Q 007481 14 EALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 93 (602)
Q Consensus 14 ~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~ 93 (602)
..+||. | |+|.++||.++.|+|++++||||||||+ |++|++..+... ++++|||+||++||.|+++.+..++
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~-----~~~~lil~PtreLa~Q~~~~l~~l~ 123 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK-----GKRCYVIFPTSLLVIQAAETIRKYA 123 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT-----SCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred HhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc-----CCeEEEEeccHHHHHHHHHHHHHHH
Confidence 458999 9 9999999999999999999999999998 889999887653 4579999999999999999999999
Q ss_pred hcCCc----eEEEEECCCCHHHH---HHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHH
Q 007481 94 QFTDI----RCCLVVGGLSTKMQ---ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIH 166 (602)
Q Consensus 94 ~~~~i----~v~~~~g~~~~~~~---~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~ 166 (602)
...++ .++.++|+.+...+ ...+.. ++|+|+||++|++++.+ +..+++|||||||+|++ |...+.
T Consensus 124 ~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-----L~~l~~lViDEah~~l~--~~~~~~ 195 (1054)
T 1gku_B 124 EKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-----LGHFDFIFVDDVDAILK--ASKNVD 195 (1054)
T ss_dssp TTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-----SCCCSEEEESCHHHHHT--STHHHH
T ss_pred hhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-----hccCCEEEEeChhhhhh--ccccHH
Confidence 88888 89999999887653 344555 99999999999997765 56899999999999998 456667
Q ss_pred HHHHhC-----------CCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHH
Q 007481 167 ELVRLC-----------PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 235 (602)
Q Consensus 167 ~i~~~~-----------~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~ 235 (602)
.++..+ +...|+++||||++.. ..+...++..+..+.+.........+.+.++. ..+...+.
T Consensus 196 ~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~------~~k~~~L~ 268 (1054)
T 1gku_B 196 KLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAVN------DESISTLS 268 (1054)
T ss_dssp HHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEES------CCCTTTTH
T ss_pred HHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEec------hhHHHHHH
Confidence 776665 3568999999999887 43333333334333333333334445554442 22233344
Q ss_pred HHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEE----cCccccccCcCC
Q 007481 236 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA----TDVAARGLDIIG 311 (602)
Q Consensus 236 ~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVa----T~~~~~GlDip~ 311 (602)
.++... ++++||||+++..++.++..|... +.+..+||++. .+++.|++|+++|||| |+++++|||+|+
T Consensus 269 ~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~ 341 (1054)
T 1gku_B 269 SILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPE 341 (1054)
T ss_dssp HHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTT
T ss_pred HHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCC
Confidence 444443 578999999999999999999988 99999999984 7799999999999999 999999999999
Q ss_pred c-cEEEEcCCC---------------------------------------------------------------------
Q 007481 312 V-QTVINYACP--------------------------------------------------------------------- 321 (602)
Q Consensus 312 v-~~VI~~d~p--------------------------------------------------------------------- 321 (602)
| ++|||||+|
T Consensus 342 VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 421 (1054)
T 1gku_B 342 RIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEV 421 (1054)
T ss_dssp TCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEE
T ss_pred cccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecce
Confidence 6 999999999
Q ss_pred --CChhhHHHHhhhcccCCCcc--eEEEEEecCcHHHHHHHHHHhcC
Q 007481 322 --RDLTSYVHRVGRTARAGREG--YAVTFVTDNDRSLLKAIAKRAGS 364 (602)
Q Consensus 322 --~s~~~yiQriGRa~R~g~~g--~~i~l~~~~d~~~l~~i~~~~~~ 364 (602)
.+..+|+||+|||||.|..| .+++|+...+..++..+.+.++.
T Consensus 422 ~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 422 IFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp EEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred ecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999987776 48888888899999999887764
No 28
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=4.4e-44 Score=410.64 Aligned_cols=333 Identities=21% Similarity=0.271 Sum_probs=265.7
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPL-ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 80 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~-~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~ 80 (602)
+|||++++.+++...||..|+|+|.++++. ++.+++++++||||||||++|.+|+++.+... +.++||++|+++
T Consensus 5 ~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-----~~~~l~i~P~ra 79 (720)
T 2zj8_A 5 ELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-----GGKAVYIVPLKA 79 (720)
T ss_dssp GCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-----CSEEEEECSSGG
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-----CCEEEEEcCcHH
Confidence 689999999999999999999999999998 88899999999999999999999999888643 347999999999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC
Q 007481 81 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 160 (602)
Q Consensus 81 La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g 160 (602)
|+.|+++.+..+... ++++..++|+...... ....++|+|+||++|...+.+. ...+.++++|||||||.+.+++
T Consensus 80 La~q~~~~~~~l~~~-g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~-~~~l~~~~~vIiDE~H~l~~~~ 154 (720)
T 2zj8_A 80 LAEEKFQEFQDWEKI-GLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHG-SSWIKDVKILVADEIHLIGSRD 154 (720)
T ss_dssp GHHHHHHHTGGGGGG-TCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHT-CTTGGGEEEEEEETGGGGGCTT
T ss_pred HHHHHHHHHHHHHhc-CCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcC-hhhhhcCCEEEEECCcccCCCc
Confidence 999999999766543 8899999998654332 2346899999999999988874 3447889999999999999888
Q ss_pred cHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeee-----eechh---hhhhHHH
Q 007481 161 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV-----RIRRM---REVNQEA 232 (602)
Q Consensus 161 f~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~-----~~~~~---~~~~k~~ 232 (602)
+...+..++..++...|+|++|||+++ ..++...+ ..+. +. ...++..+...+. .+... .......
T Consensus 155 r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l-~~~~-~~---~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (720)
T 2zj8_A 155 RGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWL-NAEL-IV---SDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEE 228 (720)
T ss_dssp THHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHT-TEEE-EE---CCCCSSEEEEEEEETTEEEETTSCEEECSSTTH
T ss_pred ccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHh-CCcc-cC---CCCCCCcceEEEEeCCeeeccccchhhhhHHHH
Confidence 888888888887778999999999985 34444433 2221 11 1112222222111 11110 0111223
Q ss_pred HHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhc---------------------------------CCceeeccCCCCH
Q 007481 233 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA---------------------------------ALKAAELHGNLTQ 279 (602)
Q Consensus 233 ~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~---------------------------------g~~~~~lhg~~~~ 279 (602)
.+..++. .++++||||++++.++.++..|... ...+..+||++++
T Consensus 229 ~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~ 306 (720)
T 2zj8_A 229 LVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGR 306 (720)
T ss_dssp HHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCH
T ss_pred HHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCH
Confidence 3333332 3689999999999999998888643 1248899999999
Q ss_pred HHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEE----cC----CCCChhhHHHHhhhcccCC--CcceEEEEEec
Q 007481 280 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN----YA----CPRDLTSYVHRVGRTARAG--REGYAVTFVTD 349 (602)
Q Consensus 280 ~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~----~d----~p~s~~~yiQriGRa~R~g--~~g~~i~l~~~ 349 (602)
.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||.| ..|.|++++++
T Consensus 307 ~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~ 386 (720)
T 2zj8_A 307 DERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTS 386 (720)
T ss_dssp HHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSS
T ss_pred HHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecC
Confidence 99999999999999999999999999999999999998 77 6899999999999999987 57999999998
Q ss_pred CcH
Q 007481 350 NDR 352 (602)
Q Consensus 350 ~d~ 352 (602)
.+.
T Consensus 387 ~~~ 389 (720)
T 2zj8_A 387 DDP 389 (720)
T ss_dssp SCH
T ss_pred ccH
Confidence 873
No 29
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.3e-43 Score=406.72 Aligned_cols=331 Identities=21% Similarity=0.273 Sum_probs=258.9
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPL-ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 80 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~-~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~ 80 (602)
+|+|++++.+++..+||..|+|+|.++++. ++.+++++++||||||||++|.+++++.+... +.+++|++|+++
T Consensus 12 ~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-----~~~il~i~P~r~ 86 (715)
T 2va8_A 12 DLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-----GGKAIYVTPLRA 86 (715)
T ss_dssp GSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-----CSEEEEECSCHH
T ss_pred HcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-----CCeEEEEeCcHH
Confidence 689999999999999999999999999999 77899999999999999999999999887643 347999999999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC
Q 007481 81 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 160 (602)
Q Consensus 81 La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g 160 (602)
|+.|+++.++.+.. .++++..++|+....... ...++|+|+||++|...+.+. ...+.++++|||||||.+.+.+
T Consensus 87 La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~-~~~l~~~~~vIiDE~H~l~~~~ 161 (715)
T 2va8_A 87 LTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHR-PEWLNEVNYFVLDELHYLNDPE 161 (715)
T ss_dssp HHHHHHHHHGGGGG-GTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHC-CGGGGGEEEEEECSGGGGGCTT
T ss_pred HHHHHHHHHHHhhc-CCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCC-hhHhhccCEEEEechhhcCCcc
Confidence 99999999965544 488999999986543321 236899999999999988874 3347889999999999998878
Q ss_pred cHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeee-----------eech-----
Q 007481 161 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV-----------RIRR----- 224 (602)
Q Consensus 161 f~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~-----------~~~~----- 224 (602)
+...+..++..++ ..|+|++|||+++ ..++...+ ..+.. . ...++..+...+. .+..
T Consensus 162 ~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l-~~~~~-~---~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (715)
T 2va8_A 162 RGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWL-GAEPV-A---TNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKK 234 (715)
T ss_dssp THHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHH-TCEEE-E---CCCCSSCEEEEEEEECSSTTEEEEEETTSCEEE
T ss_pred cchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHh-CCCcc-C---CCCCCCCceEEEEecCCcccceeeecCcchhhh
Confidence 8888888877666 7899999999975 34444433 22221 1 1112222222111 1110
Q ss_pred hh-hhhHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcC------------------------------------
Q 007481 225 MR-EVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAA------------------------------------ 267 (602)
Q Consensus 225 ~~-~~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g------------------------------------ 267 (602)
.. .......+..++. .++++||||++++.++.++..|....
T Consensus 235 ~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 312 (715)
T 2va8_A 235 VHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLIS 312 (715)
T ss_dssp EESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHh
Confidence 00 1122333333332 46899999999999999999887542
Q ss_pred CceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEE----cC-------CCCChhhHHHHhhhccc
Q 007481 268 LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN----YA-------CPRDLTSYVHRVGRTAR 336 (602)
Q Consensus 268 ~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~----~d-------~p~s~~~yiQriGRa~R 336 (602)
..+..+||++++.+|..+++.|++|..+|||||+++++|||+|++++||+ || .|.|..+|.||+|||||
T Consensus 313 ~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR 392 (715)
T 2va8_A 313 KGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGR 392 (715)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCC
T ss_pred cCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCC
Confidence 24889999999999999999999999999999999999999999999999 99 89999999999999999
Q ss_pred CC--CcceEEEEEecCc
Q 007481 337 AG--REGYAVTFVTDND 351 (602)
Q Consensus 337 ~g--~~g~~i~l~~~~d 351 (602)
.| ..|.|++++++.+
T Consensus 393 ~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 393 PGFDQIGESIVVVRDKE 409 (715)
T ss_dssp TTTCSCEEEEEECSCGG
T ss_pred CCCCCCceEEEEeCCch
Confidence 87 4799999998765
No 30
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.4e-43 Score=381.52 Aligned_cols=326 Identities=20% Similarity=0.235 Sum_probs=249.3
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCce
Q 007481 20 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 99 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~ 99 (602)
.|+|+|.++++.++.+ ++|+.+|||+|||++++++++..+.. .+.++|||||+++|+.||++.+..+.......
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-----~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~ 82 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-----YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEK 82 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-----SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-----CCCeEEEEECCHHHHHHHHHHHHHHhCcchhh
Confidence 6999999999999999 99999999999999999998887752 24469999999999999999999887555568
Q ss_pred EEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCCCccee
Q 007481 100 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179 (602)
Q Consensus 100 v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~i 179 (602)
+..++|+....... .+...++|+|+||+.|...+... .+.+..+++|||||||++.+......+...+....+..+++
T Consensus 83 v~~~~g~~~~~~~~-~~~~~~~ivv~T~~~l~~~~~~~-~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l 160 (494)
T 1wp9_A 83 IVALTGEKSPEERS-KAWARAKVIVATPQTIENDLLAG-RISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVI 160 (494)
T ss_dssp EEEECSCSCHHHHH-HHHHHCSEEEECHHHHHHHHHTT-SCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEE
T ss_pred eEEeeCCcchhhhh-hhccCCCEEEecHHHHHHHHhcC-CcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEE
Confidence 89999988765433 33456899999999999988764 46788999999999999987655555555555556788999
Q ss_pred eeeccCChhHHH---HHHHhcCCCeEEecCCCCCC-----CCCceeeeeeech---------------------------
Q 007481 180 LFSATLTEDVDE---LIKLSLTKPLRLSADPSAKR-----PSTLTEEVVRIRR--------------------------- 224 (602)
Q Consensus 180 l~SAT~~~~~~~---l~~~~l~~p~~~~~~~~~~~-----~~~l~~~~~~~~~--------------------------- 224 (602)
++||||...... +.......+..+........ +............
T Consensus 161 ~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (494)
T 1wp9_A 161 GLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLE 240 (494)
T ss_dssp EEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred EEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999854333 33322222111111000000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 007481 225 -------------------------------------------------------------------------------- 224 (602)
Q Consensus 225 -------------------------------------------------------------------------------- 224 (602)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (494)
T 1wp9_A 241 SSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIF 320 (494)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhh
Confidence
Q ss_pred ------------------hhhhhHHHHHHHHhhh----cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccC-------
Q 007481 225 ------------------MREVNQEAVLLSLCSK----TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHG------- 275 (602)
Q Consensus 225 ------------------~~~~~k~~~l~~l~~~----~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg------- 275 (602)
.....+...+..++.. ..+.++||||+++..++.+...|...|+.+..+||
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~ 400 (494)
T 1wp9_A 321 SDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEND 400 (494)
T ss_dssp TSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC---
T ss_pred hhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecccccccc
Confidence 0111233334444443 46789999999999999999999999999999999
Q ss_pred -CCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHH
Q 007481 276 -NLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 354 (602)
Q Consensus 276 -~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~ 354 (602)
+++..+|.++++.|++|..+|||||+++++|||+|++++||+||+|+|+..|+||+||+||.|. |.++.|+++++.+.
T Consensus 401 ~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 401 RGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDE 479 (494)
T ss_dssp ----CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHHH
T ss_pred ccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987 99999999987543
No 31
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.6e-43 Score=395.12 Aligned_cols=326 Identities=17% Similarity=0.168 Sum_probs=229.3
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 15 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 15 ~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
.+|+ .|+|+|..++|.++.|+ |+.++||||||++|++|++...+. +.+++||+||++||.|+++++..++.
T Consensus 70 ~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~------g~~vlVltPTreLA~Q~~e~~~~l~~ 140 (853)
T 2fsf_A 70 VFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT------GKGVHVVTVNDYLAQRDAENNRPLFE 140 (853)
T ss_dssp HHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT------SSCCEEEESSHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc------CCcEEEEcCCHHHHHHHHHHHHHHHH
Confidence 4675 89999999999999998 999999999999999999866542 34699999999999999999999999
Q ss_pred cCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHH-HHHHHccC-----CCCCCCcceEEEeCccccc-cCC-------
Q 007481 95 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLDDLAVLILDEADRLL-ELG------- 160 (602)
Q Consensus 95 ~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L-~~~l~~~~-----~~~l~~l~llVlDEah~l~-~~g------- 160 (602)
+.++++++++||.+.. ...+..+++|+|+||++| +|+|+... ...+..+.++||||||+|+ +.+
T Consensus 141 ~lgl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiS 218 (853)
T 2fsf_A 141 FLGLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIIS 218 (853)
T ss_dssp HTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEE
T ss_pred hcCCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccccccc
Confidence 9999999999998864 333445689999999999 89998653 2567899999999999998 443
Q ss_pred --------cHHHHHHHHHhCCC--------------------Cccee------------------------eeeccCChh
Q 007481 161 --------FSAEIHELVRLCPK--------------------RRQTM------------------------LFSATLTED 188 (602)
Q Consensus 161 --------f~~~i~~i~~~~~~--------------------~~q~i------------------------l~SAT~~~~ 188 (602)
|...+..|+..++. .+|++ +||||++.-
T Consensus 219 g~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~ 298 (853)
T 2fsf_A 219 GPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIML 298 (853)
T ss_dssp EC------------------------------------------------------------------------------
T ss_pred CCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchH
Confidence 56677788777764 45654 899997642
Q ss_pred HHHHH-----HHhc---------------------------------CCC----eEEecCCCCCCCCCceee--------
Q 007481 189 VDELI-----KLSL---------------------------------TKP----LRLSADPSAKRPSTLTEE-------- 218 (602)
Q Consensus 189 ~~~l~-----~~~l---------------------------------~~p----~~~~~~~~~~~~~~l~~~-------- 218 (602)
+..+. ..++ +++ ..+.+.........+++.
T Consensus 299 ~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~k 378 (853)
T 2fsf_A 299 MHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEK 378 (853)
T ss_dssp ----------------------------------------------------------CCCCCEEEEEEEHHHHHTTSSE
T ss_pred HHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhh
Confidence 22110 0000 111 111111111111111100
Q ss_pred ----------------------eeeec--------------hhhhhhHHHHHHHHhhh--cCCCeEEEEeCcHHHHHHHH
Q 007481 219 ----------------------VVRIR--------------RMREVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLK 260 (602)
Q Consensus 219 ----------------------~~~~~--------------~~~~~~k~~~l~~l~~~--~~~~kvIIF~~s~~~a~~l~ 260 (602)
++.++ ......+...+...+.. ..+.++||||+|+..++.|+
T Consensus 379 l~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls 458 (853)
T 2fsf_A 379 LAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVS 458 (853)
T ss_dssp EEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHH
T ss_pred hhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHH
Confidence 00000 01234455555555532 34678999999999999999
Q ss_pred HHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCc----------------------------
Q 007481 261 ILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGV---------------------------- 312 (602)
Q Consensus 261 ~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v---------------------------- 312 (602)
..|...|+++..|||+..+.++..+.+.|+.| .|+||||+++||+||+..
T Consensus 459 ~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (853)
T 2fsf_A 459 NELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVR 536 (853)
T ss_dssp HHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHH
T ss_pred HHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhh
Confidence 99999999999999999988888888999988 699999999999999873
Q ss_pred ---------cEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHH
Q 007481 313 ---------QTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 353 (602)
Q Consensus 313 ---------~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~ 353 (602)
.+||+|+.|.|...|+||+|||||+|.+|.+++|++..|..
T Consensus 537 ~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~l 586 (853)
T 2fsf_A 537 HDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDAL 586 (853)
T ss_dssp HHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSGG
T ss_pred hhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHHH
Confidence 69999999999999999999999999999999999988743
No 32
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=5.1e-44 Score=409.00 Aligned_cols=332 Identities=22% Similarity=0.293 Sum_probs=258.8
Q ss_pred CCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChH
Q 007481 2 ELN--LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 79 (602)
Q Consensus 2 ~l~--L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr 79 (602)
+|+ |++.+.+++..+||..|+|+|.++++.++.+++++++||||||||++|.+|+++.+.. +.++||++|++
T Consensus 5 ~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~------~~~~l~i~P~r 78 (702)
T 2p6r_A 5 ELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK------GGKSLYVVPLR 78 (702)
T ss_dssp HHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT------TCCEEEEESSH
T ss_pred hhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh------CCcEEEEeCcH
Confidence 356 8899999999999999999999999999999999999999999999999999988763 34699999999
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccC
Q 007481 80 ELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 159 (602)
Q Consensus 80 ~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~ 159 (602)
+|+.|+++.++.+.. .++++..++|+...... ....++|+|+||++|...+.+. ...+.++++|||||||.+.++
T Consensus 79 ~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~-~~~l~~~~~vIiDE~H~l~~~ 153 (702)
T 2p6r_A 79 ALAGEKYESFKKWEK-IGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNR-ASWIKAVSCLVVDEIHLLDSE 153 (702)
T ss_dssp HHHHHHHHHHTTTTT-TTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTT-CSGGGGCCEEEETTGGGGGCT
T ss_pred HHHHHHHHHHHHHHh-cCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcC-hhHHhhcCEEEEeeeeecCCC
Confidence 999999999965543 48899999998654322 1247899999999999998874 334788999999999999988
Q ss_pred CcHHHHHHHHHhC---CCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeee-----eechh-----h
Q 007481 160 GFSAEIHELVRLC---PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV-----RIRRM-----R 226 (602)
Q Consensus 160 gf~~~i~~i~~~~---~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~-----~~~~~-----~ 226 (602)
++...+..++..+ .+..|+|++|||+++ ..++... +..+.. .. ..++..+...+. .+... .
T Consensus 154 ~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~-l~~~~~-~~---~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 227 (702)
T 2p6r_A 154 KRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEW-LDADYY-VS---DWRPVPLVEGVLCEGTLELFDGAFSTSR 227 (702)
T ss_dssp TTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHH-TTCEEE-EC---CCCSSCEEEEEECSSEEEEEETTEEEEE
T ss_pred CcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHH-hCCCcc-cC---CCCCccceEEEeeCCeeeccCcchhhhh
Confidence 8877777665544 568999999999985 4555443 333321 11 112222222111 01100 0
Q ss_pred hhhHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhc------------------------------CCceeeccCC
Q 007481 227 EVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA------------------------------ALKAAELHGN 276 (602)
Q Consensus 227 ~~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~------------------------------g~~~~~lhg~ 276 (602)
.......+...+. .++++||||++++.++.++..|... +..+..+||+
T Consensus 228 ~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~ 305 (702)
T 2p6r_A 228 RVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAG 305 (702)
T ss_dssp ECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTT
T ss_pred hhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCC
Confidence 0112333333332 4689999999999999998888643 2357889999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEE----cC---CCCChhhHHHHhhhcccCC--CcceEEEEE
Q 007481 277 LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN----YA---CPRDLTSYVHRVGRTARAG--REGYAVTFV 347 (602)
Q Consensus 277 ~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~----~d---~p~s~~~yiQriGRa~R~g--~~g~~i~l~ 347 (602)
+++.+|..+++.|++|..+|||||+++++|||+|++++||+ || .|.|..+|+||+|||||.| ..|.|++++
T Consensus 306 l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~ 385 (702)
T 2p6r_A 306 LLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIV 385 (702)
T ss_dssp SCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEe
Confidence 99999999999999999999999999999999999999998 76 7899999999999999987 579999999
Q ss_pred ecCcH
Q 007481 348 TDNDR 352 (602)
Q Consensus 348 ~~~d~ 352 (602)
++.+.
T Consensus 386 ~~~~~ 390 (702)
T 2p6r_A 386 GKRDR 390 (702)
T ss_dssp CGGGH
T ss_pred cCccH
Confidence 98873
No 33
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-42 Score=405.70 Aligned_cols=327 Identities=19% Similarity=0.245 Sum_probs=260.5
Q ss_pred HHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHH
Q 007481 13 CEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 92 (602)
Q Consensus 13 l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l 92 (602)
...++|. |+|+|.++|+.++.|+++++++|||||||++|.++++..+. .+.++||++||++|+.|+++.+..+
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~------~g~rvL~l~PtkaLa~Q~~~~l~~~ 152 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------NKQRVIYTSPIKALSNQKYRELLAE 152 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH------TTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc------cCCeEEEECChHHHHHHHHHHHHHH
Confidence 3456786 99999999999999999999999999999999999988764 2458999999999999999999987
Q ss_pred hhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhC
Q 007481 93 AQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 172 (602)
Q Consensus 93 ~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~ 172 (602)
.. .+++++|+... ...++|+|+||++|.+++.+. ...+.++++|||||||++.++++...+..++..+
T Consensus 153 ~~----~vglltGd~~~-------~~~~~IvV~Tpe~L~~~L~~~-~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l 220 (1010)
T 2xgj_A 153 FG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRG-SEVMREVAWVIFDEVHYMRDKERGVVWEETIILL 220 (1010)
T ss_dssp HS----CEEEECSSCEE-------CTTCSEEEEEHHHHHHHHHHT-CTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHS
T ss_pred hC----CEEEEeCCCcc-------CCCCCEEEEcHHHHHHHHHcC-cchhhcCCEEEEechhhhcccchhHHHHHHHHhc
Confidence 54 67888887653 346799999999999988774 4668899999999999999999888899999999
Q ss_pred CCCcceeeeeccCChhHH--HHHHHhcCCCeEEecCCCCCCCCCceeeeeeec---------hhh---------------
Q 007481 173 PKRRQTMLFSATLTEDVD--ELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR---------RMR--------------- 226 (602)
Q Consensus 173 ~~~~q~il~SAT~~~~~~--~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~---------~~~--------------- 226 (602)
+...|++++|||+++... .++......|..+..... ++..+.+.++... ...
T Consensus 221 ~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~--rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 298 (1010)
T 2xgj_A 221 PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF--RPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIS 298 (1010)
T ss_dssp CTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECC--CSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC--CcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHh
Confidence 999999999999986532 333333455555443322 2333333322100 000
Q ss_pred --------------------h--------hhHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCc---------
Q 007481 227 --------------------E--------VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALK--------- 269 (602)
Q Consensus 227 --------------------~--------~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~--------- 269 (602)
. ......+...+......++||||+++..|+.++..|...++.
T Consensus 299 ~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~ 378 (1010)
T 2xgj_A 299 NQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALT 378 (1010)
T ss_dssp ------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHH
T ss_pred hhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHH
Confidence 0 111122333333444569999999999999999998765442
Q ss_pred ------------------------------eeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEE--
Q 007481 270 ------------------------------AAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN-- 317 (602)
Q Consensus 270 ------------------------------~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~-- 317 (602)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+
T Consensus 379 ~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~ 458 (1010)
T 2xgj_A 379 KIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSV 458 (1010)
T ss_dssp HHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCS
T ss_pred HHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCC
Confidence 678999999999999999999999999999999999999999999999
Q ss_pred --cCC----CCChhhHHHHhhhcccCCC--cceEEEEEecC-cHHHHHHHHH
Q 007481 318 --YAC----PRDLTSYVHRVGRTARAGR--EGYAVTFVTDN-DRSLLKAIAK 360 (602)
Q Consensus 318 --~d~----p~s~~~yiQriGRa~R~g~--~g~~i~l~~~~-d~~~l~~i~~ 360 (602)
||. |.|+.+|+||+|||||.|. .|.|++++++. +...+..+..
T Consensus 459 ~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~ 510 (1010)
T 2xgj_A 459 RKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVK 510 (1010)
T ss_dssp EEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHS
T ss_pred cccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHh
Confidence 999 8999999999999999986 59999999876 6666666643
No 34
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=3.6e-44 Score=410.44 Aligned_cols=328 Identities=21% Similarity=0.244 Sum_probs=226.0
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHH-HHHHHHHhhcCC
Q 007481 19 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV-HSMIEKIAQFTD 97 (602)
Q Consensus 19 ~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~-~~~~~~l~~~~~ 97 (602)
-.|+|+|.++|+.++.|+++|+++|||||||++|++|+++.+........+.++|||+|+++|+.|| ++.+..+... +
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~ 84 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-W 84 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-T
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-C
Confidence 3699999999999999999999999999999999999998876542211234699999999999999 9999998764 4
Q ss_pred ceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHc-----cCCCCCCCcceEEEeCccccccCC-cHHHHHHHHHh
Q 007481 98 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRN-----SMSVDLDDLAVLILDEADRLLELG-FSAEIHELVRL 171 (602)
Q Consensus 98 i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~-----~~~~~l~~l~llVlDEah~l~~~g-f~~~i~~i~~~ 171 (602)
+.+..++|+......+..+...++|+|+||++|.+++.+ ...+.+..+++|||||||++...+ +...+..++..
T Consensus 85 ~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~ 164 (699)
T 4gl2_A 85 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQ 164 (699)
T ss_dssp SCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHH
T ss_pred ceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHh
Confidence 889999998876665666667899999999999998842 224567889999999999986543 22222222221
Q ss_pred ----C---------CCCcceeeeeccCChh-----------HHHHHHHhcCCCeEEecCC------CCCCCCCceeeeee
Q 007481 172 ----C---------PKRRQTMLFSATLTED-----------VDELIKLSLTKPLRLSADP------SAKRPSTLTEEVVR 221 (602)
Q Consensus 172 ----~---------~~~~q~il~SAT~~~~-----------~~~l~~~~l~~p~~~~~~~------~~~~~~~l~~~~~~ 221 (602)
. .+.++++++|||++.. +..+........+...... ....+ . ..+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p-~--~~~~~ 241 (699)
T 4gl2_A 165 KLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEP-C--KKFAI 241 (699)
T ss_dssp HHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCC-E--EEEEE
T ss_pred hhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCC-c--eEEEE
Confidence 1 2567999999999862 2222221111000000000 00000 0 00000
Q ss_pred echh-------------------------h--------------------------------------------------
Q 007481 222 IRRM-------------------------R-------------------------------------------------- 226 (602)
Q Consensus 222 ~~~~-------------------------~-------------------------------------------------- 226 (602)
+... .
T Consensus 242 ~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (699)
T 4gl2_A 242 ADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMID 321 (699)
T ss_dssp EC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred cccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0
Q ss_pred ---------------------------------------------------------hhhH----HHHHHHHhhhcC-CC
Q 007481 227 ---------------------------------------------------------EVNQ----EAVLLSLCSKTF-TS 244 (602)
Q Consensus 227 ---------------------------------------------------------~~~k----~~~l~~l~~~~~-~~ 244 (602)
...+ ...+...+.... +.
T Consensus 322 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~ 401 (699)
T 4gl2_A 322 AYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESA 401 (699)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCC
Confidence 0000 011111122223 78
Q ss_pred eEEEEeCcHHHHHHHHHHHhhc------CCceeeccCC--------CCHHHHHHHHHHHhcCCceEEEEcCccccccCcC
Q 007481 245 KVIIFSGTKQAAHRLKILFGLA------ALKAAELHGN--------LTQAQRLEALELFRKQHVDFLIATDVAARGLDII 310 (602)
Q Consensus 245 kvIIF~~s~~~a~~l~~~L~~~------g~~~~~lhg~--------~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip 310 (602)
++||||+++..++.++..|... |+.+..+||+ |++.+|.++++.|++|+++|||||+++++|||+|
T Consensus 402 ~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip 481 (699)
T 4gl2_A 402 RGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIK 481 (699)
T ss_dssp CEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCC
T ss_pred cEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccc
Confidence 9999999999999999999987 8999999999 9999999999999999999999999999999999
Q ss_pred CccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcH
Q 007481 311 GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 352 (602)
Q Consensus 311 ~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~ 352 (602)
+|++||+||+|+|+..|+||+||+||.| +.++++....+.
T Consensus 482 ~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~~~ 521 (699)
T 4gl2_A 482 ECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSGSG 521 (699)
T ss_dssp SCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESSSC
T ss_pred cCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCCch
Confidence 9999999999999999999999965543 444444444443
No 35
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=3.1e-42 Score=384.95 Aligned_cols=327 Identities=20% Similarity=0.224 Sum_probs=254.9
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 15 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 15 ~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
.+|+ .|||+|..++|.++.|+ |+.++||+|||++|.+|++...+. +..|+||+||++||.|.++++..+..
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~------g~~v~VvTpTreLA~Qdae~m~~l~~ 177 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA------GNGVHIVTVNDYLAKRDSEWMGRVHR 177 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT------TSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh------CCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 5799 99999999999999998 999999999999999999765543 33599999999999999999999999
Q ss_pred cCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHH-HHHHHccC-----CCCCCCcceEEEeCccccc-c---------
Q 007481 95 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLDDLAVLILDEADRLL-E--------- 158 (602)
Q Consensus 95 ~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L-~~~l~~~~-----~~~l~~l~llVlDEah~l~-~--------- 158 (602)
+.++++++++||.+.... .....++|+|+||++| +|+|+... .+.+..+.++||||||.|+ +
T Consensus 178 ~lGLsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiS 255 (922)
T 1nkt_A 178 FLGLQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIIS 255 (922)
T ss_dssp HTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEE
T ss_pred hcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeec
Confidence 999999999999886433 3344689999999999 89988653 3567889999999999998 3
Q ss_pred ------CCcHHHHHHHHHhCC---------CCccee-----------------eeeccCChhHHHHH-----HHhcC-C-
Q 007481 159 ------LGFSAEIHELVRLCP---------KRRQTM-----------------LFSATLTEDVDELI-----KLSLT-K- 199 (602)
Q Consensus 159 ------~gf~~~i~~i~~~~~---------~~~q~i-----------------l~SAT~~~~~~~l~-----~~~l~-~- 199 (602)
.+|...+..|+..++ +.+|++ +||||++.-+..+. ...+. +
T Consensus 256 g~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~ 335 (922)
T 1nkt_A 256 GPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDK 335 (922)
T ss_dssp EECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTT
T ss_pred CCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhccc
Confidence 247789999999998 678888 99999875333321 11221 1
Q ss_pred ------CeEEecCCCCCC------------------------C-----CCcee-ee------------------------
Q 007481 200 ------PLRLSADPSAKR------------------------P-----STLTE-EV------------------------ 219 (602)
Q Consensus 200 ------p~~~~~~~~~~~------------------------~-----~~l~~-~~------------------------ 219 (602)
+..+.++....+ + ..+++ .+
T Consensus 336 dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~i 415 (922)
T 1nkt_A 336 DYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEI 415 (922)
T ss_dssp TEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHH
T ss_pred ceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHH
Confidence 111111110000 0 00010 00
Q ss_pred -----eeec--------------hhhhhhHHHHHHHHhhh--cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCC
Q 007481 220 -----VRIR--------------RMREVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 278 (602)
Q Consensus 220 -----~~~~--------------~~~~~~k~~~l~~l~~~--~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~ 278 (602)
+.++ ......+...+...+.. ..+.++||||+|+..++.|+..|...|+++..|||+..
T Consensus 416 Y~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~ 495 (922)
T 1nkt_A 416 YKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYH 495 (922)
T ss_dssp HCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCH
T ss_pred hCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChh
Confidence 0000 01223345445444432 24678999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhcCCceEEEEcCccccccCcCCc----------------------------------------------
Q 007481 279 QAQRLEALELFRKQHVDFLIATDVAARGLDIIGV---------------------------------------------- 312 (602)
Q Consensus 279 ~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v---------------------------------------------- 312 (602)
+.++..+.+.|+.| .|+||||+++||+||+.+
T Consensus 496 ~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (922)
T 1nkt_A 496 EQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKE 573 (922)
T ss_dssp HHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhH
Confidence 88887788888877 689999999999999875
Q ss_pred ------cEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHH
Q 007481 313 ------QTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 354 (602)
Q Consensus 313 ------~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~ 354 (602)
.+||+|+.|.|...|+||+|||||+|.+|.+++|++..|.-+
T Consensus 574 V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~ 621 (922)
T 1nkt_A 574 VIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELM 621 (922)
T ss_dssp HHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHH
T ss_pred HHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHH
Confidence 599999999999999999999999999999999999887644
No 36
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.5e-41 Score=396.46 Aligned_cols=328 Identities=18% Similarity=0.211 Sum_probs=252.6
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 15 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 15 ~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
.++|+ |+|+|.++|+.++.|+++++++|||||||++|++++...+. .+.++||++|+++|+.|+++.+..+.
T Consensus 35 ~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~------~g~~vlvl~PtraLa~Q~~~~l~~~~- 106 (997)
T 4a4z_A 35 SWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR------NMTKTIYTSPIKALSNQKFRDFKETF- 106 (997)
T ss_dssp CCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH------TTCEEEEEESCGGGHHHHHHHHHTTC-
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh------cCCeEEEEeCCHHHHHHHHHHHHHHc-
Confidence 45776 99999999999999999999999999999999988887653 34579999999999999999998753
Q ss_pred cCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCC
Q 007481 95 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK 174 (602)
Q Consensus 95 ~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~ 174 (602)
.++.+..++|+... ...++|+|+||++|.+++... ...+..+++|||||||++.+++|...+..++..++.
T Consensus 107 -~~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~-~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~ 177 (997)
T 4a4z_A 107 -DDVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYRG-ADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQ 177 (997)
T ss_dssp ---CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHT-CSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCT
T ss_pred -CCCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhC-chhhcCCCEEEEECcccccccchHHHHHHHHHhccc
Confidence 37788999998653 355799999999999998764 355788999999999999999999999999999999
Q ss_pred CcceeeeeccCChhHHH--HHHHhcCCCeEEecCCCCCCCCCceeeeee-------ech---------------------
Q 007481 175 RRQTMLFSATLTEDVDE--LIKLSLTKPLRLSADPSAKRPSTLTEEVVR-------IRR--------------------- 224 (602)
Q Consensus 175 ~~q~il~SAT~~~~~~~--l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~-------~~~--------------------- 224 (602)
..|+|++|||+++.... +.......++.+.... .++..+.+.+.. +..
T Consensus 178 ~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~--~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 255 (997)
T 4a4z_A 178 HVKFILLSATVPNTYEFANWIGRTKQKNIYVISTP--KRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESA 255 (997)
T ss_dssp TCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECS--SCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC----
T ss_pred CCCEEEEcCCCCChHHHHHHHhcccCCceEEEecC--CCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccc
Confidence 99999999999865422 2222222333322211 122222222110 000
Q ss_pred --------------------------------------------------------------hhhhhHHHHHHHHhhhcC
Q 007481 225 --------------------------------------------------------------MREVNQEAVLLSLCSKTF 242 (602)
Q Consensus 225 --------------------------------------------------------------~~~~~k~~~l~~l~~~~~ 242 (602)
.........+...+....
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~ 335 (997)
T 4a4z_A 256 KGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRE 335 (997)
T ss_dssp -------------------------------------------------------------CCCCTTHHHHHHHHHHHTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCC
Confidence 001112233444555556
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhhcCC---------------------------------------ceeeccCCCCHHHHH
Q 007481 243 TSKVIIFSGTKQAAHRLKILFGLAAL---------------------------------------KAAELHGNLTQAQRL 283 (602)
Q Consensus 243 ~~kvIIF~~s~~~a~~l~~~L~~~g~---------------------------------------~~~~lhg~~~~~eR~ 283 (602)
..++||||+++..|+.++..|...++ .+..+||+|++.+|.
T Consensus 336 ~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~ 415 (997)
T 4a4z_A 336 LLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKE 415 (997)
T ss_dssp CCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHH
Confidence 67999999999999999999987665 478999999999999
Q ss_pred HHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCCC---------ChhhHHHHhhhcccCC--CcceEEEEEe--cC
Q 007481 284 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR---------DLTSYVHRVGRTARAG--REGYAVTFVT--DN 350 (602)
Q Consensus 284 ~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~---------s~~~yiQriGRa~R~g--~~g~~i~l~~--~~ 350 (602)
.+++.|+.|.++|||||+++++|||+|+ ..||+++.|. |+.+|+||+|||||.| ..|.+++++. ..
T Consensus 416 ~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~ 494 (997)
T 4a4z_A 416 LIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPL 494 (997)
T ss_dssp HHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCC
T ss_pred HHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcc
Confidence 9999999999999999999999999999 5555555544 9999999999999988 5788888883 44
Q ss_pred cHHHHHHHHHHh
Q 007481 351 DRSLLKAIAKRA 362 (602)
Q Consensus 351 d~~~l~~i~~~~ 362 (602)
+...++.+....
T Consensus 495 ~~~~~~~~i~~~ 506 (997)
T 4a4z_A 495 SIATFKEVTMGV 506 (997)
T ss_dssp CHHHHHHHHHSC
T ss_pred hHHHHHHHhcCC
Confidence 677777765443
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=3e-41 Score=384.46 Aligned_cols=321 Identities=21% Similarity=0.215 Sum_probs=240.0
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHhcC------CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 8 PLLRACEALGYSKPTPIQAACIPLALTG------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 8 ~ll~~l~~~g~~~pt~~Q~~~i~~~l~g------~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
.+-..+..+|| .|||+|.++|+.++.+ .+++++||||||||++|++|++..+.. +.+++|++||++|
T Consensus 357 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~------g~qvlvlaPtr~L 429 (780)
T 1gm5_A 357 LAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA------GFQTAFMVPTSIL 429 (780)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH------TSCEEEECSCHHH
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc------CCeEEEEeCcHHH
Confidence 44455689999 8999999999999875 599999999999999999999988753 3479999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEECCCCHHHHH---HHHc-CCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccc
Q 007481 82 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE---TALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 157 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~---~~l~-~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~ 157 (602)
|.|+++.+..+....+++++.++|+.+..... ..+. +.++|+|+||+.|.+ .+.+.++++|||||+|++.
T Consensus 430 a~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~~~~~~l~lVVIDEaHr~g 503 (780)
T 1gm5_A 430 AIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------DVHFKNLGLVIIDEQHRFG 503 (780)
T ss_dssp HHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH------CCCCSCCCEEEEESCCCC-
T ss_pred HHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh------hhhccCCceEEecccchhh
Confidence 99999999999888899999999998876533 3333 458999999998754 4568889999999999963
Q ss_pred cCCcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHH
Q 007481 158 ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 237 (602)
Q Consensus 158 ~~gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l 237 (602)
.. . ...+......+++++||||+.+...............+...+. .+ ..+...++. ......++..+
T Consensus 504 ~~---q--r~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~-~r-~~i~~~~~~-----~~~~~~l~~~i 571 (780)
T 1gm5_A 504 VK---Q--REALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPP-GR-KEVQTMLVP-----MDRVNEVYEFV 571 (780)
T ss_dssp ---------CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCS-SC-CCCEECCCC-----SSTHHHHHHHH
T ss_pred HH---H--HHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCC-CC-cceEEEEec-----cchHHHHHHHH
Confidence 21 1 1112223346899999999987655443322111111111111 11 111111111 11122222222
Q ss_pred hhh-cCCCeEEEEeCcH--------HHHHHHHHHHhh---cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcccc
Q 007481 238 CSK-TFTSKVIIFSGTK--------QAAHRLKILFGL---AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAAR 305 (602)
Q Consensus 238 ~~~-~~~~kvIIF~~s~--------~~a~~l~~~L~~---~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~ 305 (602)
... ..+.+++|||++. ..++.++..|.. .++.+..+||+|++.+|..+++.|++|+++|||||+++++
T Consensus 572 ~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~ 651 (780)
T 1gm5_A 572 RQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEV 651 (780)
T ss_dssp HHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCS
T ss_pred HHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCc
Confidence 221 3467899999965 457788888887 4789999999999999999999999999999999999999
Q ss_pred ccCcCCccEEEEcCCCC-ChhhHHHHhhhcccCCCcceEEEEEecCcHH
Q 007481 306 GLDIIGVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVTDNDRS 353 (602)
Q Consensus 306 GlDip~v~~VI~~d~p~-s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~ 353 (602)
|+|+|++++||++++|. +...|.||+||+||.|..|.|++++++.+..
T Consensus 652 GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~ 700 (780)
T 1gm5_A 652 GIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEE 700 (780)
T ss_dssp CSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHH
T ss_pred cccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChH
Confidence 99999999999999996 7889999999999999999999999854443
No 38
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.7e-40 Score=405.33 Aligned_cols=346 Identities=17% Similarity=0.207 Sum_probs=264.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhc-CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHH
Q 007481 5 LSRPLLRACEALGYSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 83 (602)
Q Consensus 5 L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~-g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~ 83 (602)
|.++.+++|...+|+.++|+|.++++.++. ++|++++||||||||++|.+|++..+..++ +.++||++|+++||.
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~----~~kavyi~P~raLa~ 986 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS----EGRCVYITPMEALAE 986 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT----TCCEEEECSCHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC----CCEEEEEcChHHHHH
Confidence 556788888889999999999999999986 578999999999999999999999988753 346999999999999
Q ss_pred HHHHHHHH-HhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCC-CCCCcceEEEeCccccccCCc
Q 007481 84 QVHSMIEK-IAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSV-DLDDLAVLILDEADRLLELGF 161 (602)
Q Consensus 84 Q~~~~~~~-l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~-~l~~l~llVlDEah~l~~~gf 161 (602)
|.++.+.. |....+++|+.++|+.+.... ....++|+||||++|..++++.... .+.++++||+||+|.+.+. .
T Consensus 987 q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-r 1062 (1724)
T 4f92_B 987 QVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-N 1062 (1724)
T ss_dssp HHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-T
T ss_pred HHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-C
Confidence 99998865 555678999999998654322 3356799999999998777654322 3678999999999988764 3
Q ss_pred HHHHHHH-------HHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhH----
Q 007481 162 SAEIHEL-------VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ---- 230 (602)
Q Consensus 162 ~~~i~~i-------~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k---- 230 (602)
...+..+ ....+...|+|++|||+++ ..+++...-..+..+.......+|..+...+..+........
T Consensus 1063 g~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~ 1141 (1724)
T 4f92_B 1063 GPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSM 1141 (1724)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTT
T ss_pred CccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhh
Confidence 4333333 3456778999999999985 445554443333233333444566666655544332211111
Q ss_pred -HHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhh----------------------------------cCCceeeccC
Q 007481 231 -EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL----------------------------------AALKAAELHG 275 (602)
Q Consensus 231 -~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~----------------------------------~g~~~~~lhg 275 (602)
......+.....+.++||||+|+..|+.++..|.. ....++++||
T Consensus 1142 ~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHa 1221 (1724)
T 4f92_B 1142 AKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHE 1221 (1724)
T ss_dssp HHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECT
T ss_pred cchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECC
Confidence 11222233345578999999999999887655521 1235789999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEE----c------CCCCChhhHHHHhhhcccCCC--cceE
Q 007481 276 NLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN----Y------ACPRDLTSYVHRVGRTARAGR--EGYA 343 (602)
Q Consensus 276 ~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~----~------d~p~s~~~yiQriGRa~R~g~--~g~~ 343 (602)
+|++.+|..+++.|++|.++|||||+++++|+|+|...+||. | ..|.+..+|+||+|||||+|. .|.|
T Consensus 1222 gL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~a 1301 (1724)
T 4f92_B 1222 GLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRC 1301 (1724)
T ss_dssp TSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEE
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEE
Confidence 999999999999999999999999999999999999999983 2 346789999999999999986 6999
Q ss_pred EEEEecCcHHHHHHHH
Q 007481 344 VTFVTDNDRSLLKAIA 359 (602)
Q Consensus 344 i~l~~~~d~~~l~~i~ 359 (602)
++++.+.+...++.+.
T Consensus 1302 vll~~~~~~~~~~~ll 1317 (1724)
T 4f92_B 1302 VIMCQGSKKDFFKKFL 1317 (1724)
T ss_dssp EEEEEGGGHHHHHHHT
T ss_pred EEEecchHHHHHHHHh
Confidence 9999999888777664
No 39
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.6e-39 Score=386.42 Aligned_cols=322 Identities=19% Similarity=0.186 Sum_probs=253.2
Q ss_pred CCCCHHHHHHH-HHCCCCCCcHHHHHHHHHHhc----CC--CEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEE
Q 007481 3 LNLSRPLLRAC-EALGYSKPTPIQAACIPLALT----GR--DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 75 (602)
Q Consensus 3 l~L~~~ll~~l-~~~g~~~pt~~Q~~~i~~~l~----g~--dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL 75 (602)
++++..+.+.+ ..+||. |||+|.++|+.++. |+ |+++++|||||||.+|+++++..+. .+.+++||
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~------~g~~vlvl 658 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD------NHKQVAVL 658 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT------TTCEEEEE
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH------hCCeEEEE
Confidence 56777777777 567886 79999999999987 66 9999999999999999888887653 34589999
Q ss_pred cChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHH---HHc-CCCcEEEECcHHHHHHHHccCCCCCCCcceEEEe
Q 007481 76 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET---ALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 151 (602)
Q Consensus 76 ~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~---~l~-~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlD 151 (602)
|||++|+.|+++.+..+....++++..+++..+...... .+. +.++|+|+||+.|. ..+.+.++++||||
T Consensus 659 vPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~------~~~~~~~l~lvIiD 732 (1151)
T 2eyq_A 659 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ------SDVKFKDLGLLIVD 732 (1151)
T ss_dssp CSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH------SCCCCSSEEEEEEE
T ss_pred echHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh------CCccccccceEEEe
Confidence 999999999999999887777889999988777654432 233 45899999997653 24678899999999
Q ss_pred CccccccCCcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHH
Q 007481 152 EADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE 231 (602)
Q Consensus 152 Eah~l~~~gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~ 231 (602)
|||++ ......++..++...++++|||||++.........+.++..+...+. ....+...+.... ..
T Consensus 733 EaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~--~r~~i~~~~~~~~------~~ 799 (1151)
T 2eyq_A 733 EEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA--RRLAVKTFVREYD------SM 799 (1151)
T ss_dssp SGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCC--BCBCEEEEEEECC------HH
T ss_pred chHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCC--CccccEEEEecCC------HH
Confidence 99994 33445556666677899999999988777666555544433322111 1111222222111 11
Q ss_pred HHHHHHhh-hcCCCeEEEEeCcHHHHHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccC
Q 007481 232 AVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 308 (602)
Q Consensus 232 ~~l~~l~~-~~~~~kvIIF~~s~~~a~~l~~~L~~~--g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlD 308 (602)
.+...+.. ...+++++|||+++..++.++..|... ++.+..+||+|++.+|..+++.|++|+++|||||+++++|||
T Consensus 800 ~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiD 879 (1151)
T 2eyq_A 800 VVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGID 879 (1151)
T ss_dssp HHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSC
T ss_pred HHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeec
Confidence 11222222 234689999999999999999999887 889999999999999999999999999999999999999999
Q ss_pred cCCccEEEEcCC-CCChhhHHHHhhhcccCCCcceEEEEEecC
Q 007481 309 IIGVQTVINYAC-PRDLTSYVHRVGRTARAGREGYAVTFVTDN 350 (602)
Q Consensus 309 ip~v~~VI~~d~-p~s~~~yiQriGRa~R~g~~g~~i~l~~~~ 350 (602)
+|++++||++++ +++..+|+||+||+||.|..|.|++++.+.
T Consensus 880 ip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 880 IPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp CTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred ccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 999999999998 579999999999999999999999998765
No 40
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=2.4e-40 Score=364.92 Aligned_cols=313 Identities=15% Similarity=0.125 Sum_probs=235.5
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCc
Q 007481 19 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI 98 (602)
Q Consensus 19 ~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i 98 (602)
..|||+|.++|+.++.++++++++|||||||++|+++++..+... ..++|||+||++|+.||++.+..+..+.++
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-----~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~ 186 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-----EGKILIIVPTTALTTQMADDFVDYRLFSHA 186 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC-----SSEEEEEESSHHHHHHHHHHHHHTTSSCGG
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC-----CCeEEEEECcHHHHHHHHHHHHHhhcCCcc
Confidence 479999999999999999999999999999999998888776532 237999999999999999999998777778
Q ss_pred eEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcce
Q 007481 99 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178 (602)
Q Consensus 99 ~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~ 178 (602)
.+..++|+.+...+ +...++|+|+||+.|... ....+.++++|||||||++.. ..+..++..++...++
T Consensus 187 ~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~ 255 (510)
T 2oca_A 187 MIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFK 255 (510)
T ss_dssp GEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEE
T ss_pred ceEEEecCCccccc---cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEE
Confidence 88999988765443 567789999999977542 224467899999999999875 4566777778788899
Q ss_pred eeeeccCChhHHHHHH-HhcCCCeEEecCCCCC------CCCCceeeeeeechh----------hh--------hhHHHH
Q 007481 179 MLFSATLTEDVDELIK-LSLTKPLRLSADPSAK------RPSTLTEEVVRIRRM----------RE--------VNQEAV 233 (602)
Q Consensus 179 il~SAT~~~~~~~l~~-~~l~~p~~~~~~~~~~------~~~~l~~~~~~~~~~----------~~--------~~k~~~ 233 (602)
++|||||++....+.. ..+..+..+....... .+..+....+..... .. ..+...
T Consensus 256 l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (510)
T 2oca_A 256 FGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKW 335 (510)
T ss_dssp EEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHH
T ss_pred EEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHH
Confidence 9999999766433221 1122333332221100 011111111111100 00 011222
Q ss_pred HHHHhhhc---CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEc-CccccccCc
Q 007481 234 LLSLCSKT---FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT-DVAARGLDI 309 (602)
Q Consensus 234 l~~l~~~~---~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT-~~~~~GlDi 309 (602)
+..++... .+..+|||++ ...++.++..|...+..+..+||++++.+|.++++.|++|+.+||||| +++++|+|+
T Consensus 336 l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDi 414 (510)
T 2oca_A 336 IAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISV 414 (510)
T ss_dssp HHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCC
T ss_pred HHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhccccc
Confidence 33333322 3445666666 888999999999998899999999999999999999999999999999 999999999
Q ss_pred CCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEe
Q 007481 310 IGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 348 (602)
Q Consensus 310 p~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~ 348 (602)
|++++||++++|+++..|+|++||+||.|..|.++++++
T Consensus 415 p~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 415 KNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999999999987774444444
No 41
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=5.7e-42 Score=383.45 Aligned_cols=314 Identities=15% Similarity=0.132 Sum_probs=236.3
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHH
Q 007481 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 82 (602)
Q Consensus 3 l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La 82 (602)
+++++.++++|... +..|+|+|+.++|.++.|+|+|+.||||||||++|++|+++.+... +.++|||+||++||
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~-----~~~vLvl~PtreLa 228 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR-----RLRTLILAPTRVVA 228 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-----TCCEEEEESSHHHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC-----CCeEEEEcChHHHH
Confidence 45777777777554 5889999999999999999999999999999999999999988763 35799999999999
Q ss_pred HHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcH
Q 007481 83 VQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS 162 (602)
Q Consensus 83 ~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~ 162 (602)
.|+++.+. +..+.. .+... ......+..+.++|.+.+...+... ..+.++++|||||||++ +.+|.
T Consensus 229 ~Qi~~~l~------~~~v~~-~~~~l----~~~~tp~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~~~~~ 294 (618)
T 2whx_A 229 AEMEEALR------GLPIRY-QTPAV----KSDHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-DPCSV 294 (618)
T ss_dssp HHHHHHTT------TSCEEE-CCTTS----SCCCCSSSCEEEEEHHHHHHHHHHC--SSCCCCSEEEEESTTCC-SHHHH
T ss_pred HHHHHHhc------CCceeE-ecccc----eeccCCCceEEEEChHHHHHHHhcc--ccccCCeEEEEECCCCC-CccHH
Confidence 99988776 333332 22110 0011233467788888888777663 45889999999999998 66677
Q ss_pred HHHHHHHHhCC-CCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhhc
Q 007481 163 AEIHELVRLCP-KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 241 (602)
Q Consensus 163 ~~i~~i~~~~~-~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~ 241 (602)
..+..+...++ ...|+++||||++..+..+.. .++..+.+...... . ... ..+..+..
T Consensus 295 ~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~~~-~------------~~~---~ll~~l~~-- 353 (618)
T 2whx_A 295 AARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREIPE-R------------SWN---TGFDWITD-- 353 (618)
T ss_dssp HHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCCCS-S------------CCS---SSCHHHHH--
T ss_pred HHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccCCH-H------------HHH---HHHHHHHh--
Confidence 78888877765 678999999999876443221 22322222111100 0 000 11111222
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEE------
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV------ 315 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~V------ 315 (602)
..+++||||+|+..++.++..|...++.+..+||+ +|.++++.|++|+.+|||||+++++|||+| +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~ 428 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRC 428 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcce
Confidence 36799999999999999999999999999999984 788899999999999999999999999997 8888
Q ss_pred --------------EEcCCCCChhhHHHHhhhcccCCC-cceEEEEEe---cCcHHHHHHHHHHh
Q 007481 316 --------------INYACPRDLTSYVHRVGRTARAGR-EGYAVTFVT---DNDRSLLKAIAKRA 362 (602)
Q Consensus 316 --------------I~~d~p~s~~~yiQriGRa~R~g~-~g~~i~l~~---~~d~~~l~~i~~~~ 362 (602)
|+|++|.+..+|+||+||+||+|. .|.+++|++ +.|...+..++...
T Consensus 429 ~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 429 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred ecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 788889999999999999999964 899999997 77777777776653
No 42
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=4.1e-40 Score=359.65 Aligned_cols=297 Identities=19% Similarity=0.233 Sum_probs=223.3
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCce
Q 007481 20 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 99 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~ 99 (602)
.|+|+|.++++.++.++++++++|||||||++|+.++... +.++|||||+++|+.||++.+..| ++.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~ 159 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------STPTLIVVPTLALAEQWKERLGIF----GEE 159 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---------CSCEEEEESSHHHHHHHHHHGGGG----CGG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---------CCCEEEEECCHHHHHHHHHHHHhC----CCc
Confidence 6999999999999999999999999999999998887754 236999999999999999998874 677
Q ss_pred -EEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcce
Q 007481 100 -CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178 (602)
Q Consensus 100 -v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~ 178 (602)
+..++|+.. ..++|+|+||+.+...+... ...+++|||||||++.+.+|.. ++..+ ...++
T Consensus 160 ~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~ 221 (472)
T 2fwr_A 160 YVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFR 221 (472)
T ss_dssp GEEEBSSSCB---------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEE
T ss_pred ceEEECCCcC---------CcCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeE
Confidence 888888754 35799999999998776532 2358899999999999887764 44444 35789
Q ss_pred eeeeccCChh-------------------HHHHHHHhcCCCeEE--ecCCCC------------------------CCCC
Q 007481 179 MLFSATLTED-------------------VDELIKLSLTKPLRL--SADPSA------------------------KRPS 213 (602)
Q Consensus 179 il~SAT~~~~-------------------~~~l~~~~l~~p~~~--~~~~~~------------------------~~~~ 213 (602)
+++||||... ..++...++..+... .+.... ....
T Consensus 222 l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (472)
T 2fwr_A 222 LGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAE 301 (472)
T ss_dssp EEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCS
T ss_pred EEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchh
Confidence 9999999732 222211112211110 000000 0000
Q ss_pred Cceeeeeeec-------------------hhhhhhHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeecc
Q 007481 214 TLTEEVVRIR-------------------RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELH 274 (602)
Q Consensus 214 ~l~~~~~~~~-------------------~~~~~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lh 274 (602)
.+.+ ++... ......+...+..++....+.++||||++...++.++..|. +..+|
T Consensus 302 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~ 375 (472)
T 2fwr_A 302 DFNK-IVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAIT 375 (472)
T ss_dssp SSTT-TTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCC
T ss_pred hHHH-HHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceee
Confidence 0000 00000 00122344566666666778899999999999999999884 56899
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCc---ceEEEEEecCc
Q 007481 275 GNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE---GYAVTFVTDND 351 (602)
Q Consensus 275 g~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~---g~~i~l~~~~d 351 (602)
|+++..+|.++++.|++|+++|||||+++++|+|+|++++||++++|+|+..|+||+||+||.|.. ..+|.|++.++
T Consensus 376 g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t 455 (472)
T 2fwr_A 376 HRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGT 455 (472)
T ss_dssp SSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999999999999999998743 45666677665
Q ss_pred HH
Q 007481 352 RS 353 (602)
Q Consensus 352 ~~ 353 (602)
.+
T Consensus 456 ~e 457 (472)
T 2fwr_A 456 GE 457 (472)
T ss_dssp C-
T ss_pred ch
Confidence 33
No 43
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=5.7e-40 Score=400.80 Aligned_cols=339 Identities=18% Similarity=0.235 Sum_probs=257.5
Q ss_pred CCCCCcHHHHHHHHHHhc-CCCEEEEcCCCchHHHHHHHHHHHHHHcCCC-----CCCCcEEEEEcChHHHHHHHHHHHH
Q 007481 17 GYSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPK-----RIPAIRVLILTPTRELAVQVHSMIE 90 (602)
Q Consensus 17 g~~~pt~~Q~~~i~~~l~-g~dvii~a~TGSGKT~a~~l~il~~l~~~~~-----~~~~~~vLiL~Ptr~La~Q~~~~~~ 90 (602)
||.+|+|+|.+++|.++. ++|++++||||||||++|.++++..+..... ...+.++|||+|+++||.|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 899999999999999886 7899999999999999999999999875322 1346789999999999999999999
Q ss_pred HHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCC-CCCCCcceEEEeCccccccCCcHHHHHHHH
Q 007481 91 KIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS-VDLDDLAVLILDEADRLLELGFSAEIHELV 169 (602)
Q Consensus 91 ~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~-~~l~~l~llVlDEah~l~~~gf~~~i~~i~ 169 (602)
......+++|+.++|+.+.... ....++|+||||+++...+++... ..++.+++|||||+|.+.+ .....++.++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 8888889999999998764332 135689999999998555544321 1367899999999997765 3444444333
Q ss_pred -------HhCCCCcceeeeeccCChhHHHHHHHhcCC-CeEEecCCCCCCCCCceeeeeeechhhhhhHHHHH-----HH
Q 007481 170 -------RLCPKRRQTMLFSATLTEDVDELIKLSLTK-PLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL-----LS 236 (602)
Q Consensus 170 -------~~~~~~~q~il~SAT~~~~~~~l~~~~l~~-p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l-----~~ 236 (602)
..++...|+|++|||+++ ..+++...-.. +..........+|..+.+.++.+...........+ ..
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEK 310 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHH
Confidence 346778999999999985 45555443222 22222333445777777776655433222222222 12
Q ss_pred HhhhcCCCeEEEEeCcHHHHHHHHHHHhh-------------------------------------cCCceeeccCCCCH
Q 007481 237 LCSKTFTSKVIIFSGTKQAAHRLKILFGL-------------------------------------AALKAAELHGNLTQ 279 (602)
Q Consensus 237 l~~~~~~~kvIIF~~s~~~a~~l~~~L~~-------------------------------------~g~~~~~lhg~~~~ 279 (602)
+.....++++||||+|++.|+.++..|.. ....++++||+|++
T Consensus 311 v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~ 390 (1724)
T 4f92_B 311 IMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTR 390 (1724)
T ss_dssp HTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCT
T ss_pred HHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCH
Confidence 22334467899999999988887766642 12347889999999
Q ss_pred HHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEE----cCC------CCChhhHHHHhhhcccCCC--cceEEEEE
Q 007481 280 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN----YAC------PRDLTSYVHRVGRTARAGR--EGYAVTFV 347 (602)
Q Consensus 280 ~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~----~d~------p~s~~~yiQriGRa~R~g~--~g~~i~l~ 347 (602)
.+|..+.+.|++|.++|||||+++++|+|+|.+++||. |++ |.+..+|.||+|||||.|. .|.+++++
T Consensus 391 ~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~ 470 (1724)
T 4f92_B 391 VDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILIT 470 (1724)
T ss_dssp HHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEe
Confidence 99999999999999999999999999999999999995 443 4589999999999999874 69999999
Q ss_pred ecCcHHHHHHHHH
Q 007481 348 TDNDRSLLKAIAK 360 (602)
Q Consensus 348 ~~~d~~~l~~i~~ 360 (602)
...+...+..+..
T Consensus 471 ~~~~~~~~~~ll~ 483 (1724)
T 4f92_B 471 SHGELQYYLSLLN 483 (1724)
T ss_dssp ESTTCCHHHHHTT
T ss_pred cchhHHHHHHHHc
Confidence 9988776666543
No 44
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=2.4e-40 Score=358.98 Aligned_cols=287 Identities=16% Similarity=0.181 Sum_probs=216.6
Q ss_pred CCCCCcHHHHHHHHHHhcCCCE-EEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhc
Q 007481 17 GYSKPTPIQAACIPLALTGRDI-CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 95 (602)
Q Consensus 17 g~~~pt~~Q~~~i~~~l~g~dv-ii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~ 95 (602)
|+.+|+|+|+ +||.++.++++ +++||||||||++|++|++..+... +.++|||+||++|+.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~-----~~~~lvl~Ptr~La~Q~~~~l~----- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR-----RLRTLILAPTRVVAAEMEEALR----- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHTT-----
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc-----CCcEEEECCCHHHHHHHHHHhc-----
Confidence 7899999986 89999999887 8999999999999999999887653 3579999999999999988875
Q ss_pred CCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHH-hCCC
Q 007481 96 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVR-LCPK 174 (602)
Q Consensus 96 ~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~-~~~~ 174 (602)
++.+......... .......|.++|++.|..++.+. ..+.++++|||||||++ +.++...+..+.. ..+.
T Consensus 70 -g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~ 140 (451)
T 2jlq_A 70 -GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMG 140 (451)
T ss_dssp -TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC--SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTT
T ss_pred -Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc--ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCC
Confidence 3333322222111 12344679999999999888763 56889999999999987 3333333322322 2355
Q ss_pred CcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhhcCCCeEEEEeCcHH
Q 007481 175 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQ 254 (602)
Q Consensus 175 ~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~kvIIF~~s~~ 254 (602)
..|+++||||++..+..+ ....+..+..... .+. ..+. .... .+. ...+++||||+++.
T Consensus 141 ~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~--~p~---~~~~--------~~~~----~l~-~~~~~~lVF~~s~~ 199 (451)
T 2jlq_A 141 EAAAIFMTATPPGSTDPF---PQSNSPIEDIERE--IPE---RSWN--------TGFD----WIT-DYQGKTVWFVPSIK 199 (451)
T ss_dssp SCEEEEECSSCTTCCCSS---CCCSSCEEEEECC--CCS---SCCS--------SSCH----HHH-HCCSCEEEECSSHH
T ss_pred CceEEEEccCCCccchhh---hcCCCceEecCcc--CCc---hhhH--------HHHH----HHH-hCCCCEEEEcCCHH
Confidence 789999999998754322 2223332222111 000 0000 0011 111 23579999999999
Q ss_pred HHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcC---------------
Q 007481 255 AAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA--------------- 319 (602)
Q Consensus 255 ~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d--------------- 319 (602)
.++.++..|...|+.+..+||++. ..+++.|++|+.+|||||+++++|||+|+ ++|||||
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l 274 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERV 274 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccccee
Confidence 999999999999999999999764 57899999999999999999999999999 9999999
Q ss_pred -----CCCChhhHHHHhhhcccCCC-cceEEEEEec
Q 007481 320 -----CPRDLTSYVHRVGRTARAGR-EGYAVTFVTD 349 (602)
Q Consensus 320 -----~p~s~~~yiQriGRa~R~g~-~g~~i~l~~~ 349 (602)
.|.+..+|+||+||+||.|. .|.+++|+..
T Consensus 275 ~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 275 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8888888654
No 45
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=5.9e-39 Score=356.55 Aligned_cols=278 Identities=19% Similarity=0.198 Sum_probs=212.1
Q ss_pred CcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceE
Q 007481 21 PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 100 (602)
Q Consensus 21 pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v 100 (602)
++++|..+++.+..++++++.||||||||++|.+|+++. +.++||++||++||.|+++.+.... +..+
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~---------g~~vLVl~PTReLA~Qia~~l~~~~---g~~v 285 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ---------GYKVLVLNPSVAATLGFGAYMSKAH---GIDP 285 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT---------TCCEEEEESCHHHHHHHHHHHHHHH---SCCC
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC---------CCeEEEEcchHHHHHHHHHHHHHHh---CCCe
Confidence 344555555555578899999999999999999888752 3479999999999999988776543 5566
Q ss_pred EEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcc--e
Q 007481 101 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ--T 178 (602)
Q Consensus 101 ~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q--~ 178 (602)
...+|+.. +...++|+|+||++|+ .+ ..+.+.++++||||||| +++.+|...+..++..++...| +
T Consensus 286 g~~vG~~~-------~~~~~~IlV~TPGrLl---~~-~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~~ll 353 (666)
T 3o8b_A 286 NIRTGVRT-------ITTGAPVTYSTYGKFL---AD-GGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGARLV 353 (666)
T ss_dssp EEECSSCE-------ECCCCSEEEEEHHHHH---HT-TSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTCSEE
T ss_pred eEEECcEe-------ccCCCCEEEECcHHHH---hC-CCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCCceE
Confidence 77777643 4677899999999984 33 45778889999999996 4566788889999999988777 6
Q ss_pred eeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhhcCCCeEEEEeCcHHHHHH
Q 007481 179 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHR 258 (602)
Q Consensus 179 il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~ 258 (602)
++||||++..+. ...|....+...... . +.... ... .+....++++||||++++.++.
T Consensus 354 il~SAT~~~~i~------~~~p~i~~v~~~~~~---~----i~~~~--~~~-------~l~~~~~~~vLVFv~Tr~~ae~ 411 (666)
T 3o8b_A 354 VLATATPPGSVT------VPHPNIEEVALSNTG---E----IPFYG--KAI-------PIEAIRGGRHLIFCHSKKKCDE 411 (666)
T ss_dssp EEEESSCTTCCC------CCCTTEEEEECBSCS---S----EEETT--EEE-------CGGGSSSSEEEEECSCHHHHHH
T ss_pred EEECCCCCcccc------cCCcceEEEeecccc---h----hHHHH--hhh-------hhhhccCCcEEEEeCCHHHHHH
Confidence 778999987321 112211111100000 0 00000 000 0123357899999999999999
Q ss_pred HHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEE----------EcC---------
Q 007481 259 LKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI----------NYA--------- 319 (602)
Q Consensus 259 l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI----------~~d--------- 319 (602)
++..|...++.+..+||++++.+ |.++..+|||||+++++|||+| +++|| |||
T Consensus 412 la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~ 483 (666)
T 3o8b_A 412 LAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIET 483 (666)
T ss_dssp HHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEE
T ss_pred HHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccccc
Confidence 99999999999999999999875 5566679999999999999997 99988 777
Q ss_pred --CCCChhhHHHHhhhcccCCCcceEEEEEecCcHHH
Q 007481 320 --CPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 354 (602)
Q Consensus 320 --~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~ 354 (602)
.|.+..+|+||+||+|| |+.|. ++|+++.+...
T Consensus 484 ~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 484 TTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred ccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 89999999999999999 99999 99998877543
No 46
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.1e-37 Score=357.03 Aligned_cols=332 Identities=19% Similarity=0.203 Sum_probs=240.8
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 80 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g-~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~ 80 (602)
+++|++.+++.|...+ ..|+++|+++|+.++.+ ++++++||||||||+ ++|++........ ..+.+++|++|+++
T Consensus 76 ~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~-~~g~~ilvl~P~r~ 151 (773)
T 2xau_A 76 GREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPH-LENTQVACTQPRRV 151 (773)
T ss_dssp CSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGG-GGTCEEEEEESCHH
T ss_pred ccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcccc-CCCceEEecCchHH
Confidence 6899999999999988 88999999999988874 679999999999998 4666522211111 12457999999999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccc-cccC
Q 007481 81 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR-LLEL 159 (602)
Q Consensus 81 La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~-l~~~ 159 (602)
|+.|+++.+.... +..+...+|.... ........++|+|+|||++.+.+... ..+.++++|||||+|. .++.
T Consensus 152 La~q~~~~l~~~~---~~~v~~~vG~~i~--~~~~~~~~~~I~v~T~G~l~r~l~~~--~~l~~~~~lIlDEah~R~ld~ 224 (773)
T 2xau_A 152 AAMSVAQRVAEEM---DVKLGEEVGYSIR--FENKTSNKTILKYMTDGMLLREAMED--HDLSRYSCIILDEAHERTLAT 224 (773)
T ss_dssp HHHHHHHHHHHHT---TCCBTTTEEEEET--TEEECCTTCSEEEEEHHHHHHHHHHS--TTCTTEEEEEECSGGGCCHHH
T ss_pred HHHHHHHHHHHHh---CCchhheecceec--cccccCCCCCEEEECHHHHHHHHhhC--ccccCCCEEEecCccccccch
Confidence 9999987765433 3222222221000 00012356799999999999988763 4688999999999995 5553
Q ss_pred Cc-HHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhh-hhHHHHHHHH
Q 007481 160 GF-SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMRE-VNQEAVLLSL 237 (602)
Q Consensus 160 gf-~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~k~~~l~~l 237 (602)
.+ ...+..+.... +..|+++||||++. ..+...+...|+ +.+.... ..+...+........ ......+..+
T Consensus 225 d~~~~~l~~l~~~~-~~~~iIl~SAT~~~--~~l~~~~~~~~v-i~v~gr~---~pv~~~~~~~~~~~~~~~~l~~l~~~ 297 (773)
T 2xau_A 225 DILMGLLKQVVKRR-PDLKIIIMSATLDA--EKFQRYFNDAPL-LAVPGRT---YPVELYYTPEFQRDYLDSAIRTVLQI 297 (773)
T ss_dssp HHHHHHHHHHHHHC-TTCEEEEEESCSCC--HHHHHHTTSCCE-EECCCCC---CCEEEECCSSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCceEEEEeccccH--HHHHHHhcCCCc-ccccCcc---cceEEEEecCCchhHHHHHHHHHHHH
Confidence 32 23344444444 47899999999964 344444333343 4332221 223333322211110 1112223333
Q ss_pred hhhcCCCeEEEEeCcHHHHHHHHHHHhh-----------cCCceeeccCCCCHHHHHHHHHHHh-----cCCceEEEEcC
Q 007481 238 CSKTFTSKVIIFSGTKQAAHRLKILFGL-----------AALKAAELHGNLTQAQRLEALELFR-----KQHVDFLIATD 301 (602)
Q Consensus 238 ~~~~~~~kvIIF~~s~~~a~~l~~~L~~-----------~g~~~~~lhg~~~~~eR~~il~~F~-----~g~~~iLVaT~ 301 (602)
.....++++||||+++..++.++..|.. .++.+..+||++++.+|..+++.|. +|..+|||||+
T Consensus 298 ~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~ 377 (773)
T 2xau_A 298 HATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN 377 (773)
T ss_dssp HHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT
T ss_pred HHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc
Confidence 3344578999999999999999999875 5788999999999999999999999 99999999999
Q ss_pred ccccccCcCCccEEEEcCC------------------CCChhhHHHHhhhcccCCCcceEEEEEecCcH
Q 007481 302 VAARGLDIIGVQTVINYAC------------------PRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 352 (602)
Q Consensus 302 ~~~~GlDip~v~~VI~~d~------------------p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~ 352 (602)
++++|||||+|++||++++ |.|..+|+||+|||||. ..|.||.|+++.+.
T Consensus 378 iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 378 IAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp HHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred HHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 9999999999999999887 88999999999999998 89999999986654
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=5.2e-39 Score=361.80 Aligned_cols=306 Identities=15% Similarity=0.188 Sum_probs=217.9
Q ss_pred HHHHCCCC-----CCcHHHH-----HHHHHHh------cCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEE
Q 007481 12 ACEALGYS-----KPTPIQA-----ACIPLAL------TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 75 (602)
Q Consensus 12 ~l~~~g~~-----~pt~~Q~-----~~i~~~l------~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL 75 (602)
+|..+||. .|||+|+ ++||.++ .|+|+|++||||||||++|++|+++.+... +.++|||
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~-----~~~~lil 276 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK-----RLRTAVL 276 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT-----TCCEEEE
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-----CCcEEEE
Confidence 44556777 9999999 9999998 899999999999999999999999887653 3579999
Q ss_pred cChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccc
Q 007481 76 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 155 (602)
Q Consensus 76 ~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~ 155 (602)
+||++||.|+++.+..+ ++ ....+... .......-+-+.+.+.+...+.. ...+.++++|||||||+
T Consensus 277 aPTr~La~Q~~~~l~~~----~i--~~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~--~~~l~~l~lvViDEaH~ 343 (673)
T 2wv9_A 277 APTRVVAAEMAEALRGL----PV--RYLTPAVQ-----REHSGNEIVDVMCHATLTHRLMS--PLRVPNYNLFVMDEAHF 343 (673)
T ss_dssp ESSHHHHHHHHHHTTTS----CC--EECCC--------CCCCSCCCEEEEEHHHHHHHHHS--SSCCCCCSEEEEESTTC
T ss_pred ccHHHHHHHHHHHHhcC----Ce--eeeccccc-----ccCCHHHHHHHHHhhhhHHHHhc--ccccccceEEEEeCCcc
Confidence 99999999999887743 22 11111100 00011123344555555555554 25688999999999999
Q ss_pred cccCCcHHHHHHHHHhC-CCCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHH
Q 007481 156 LLELGFSAEIHELVRLC-PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL 234 (602)
Q Consensus 156 l~~~gf~~~i~~i~~~~-~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l 234 (602)
+ +..+...+..+...+ +..+|+++||||+++.+..+... ..|+.... ..+.. ......+
T Consensus 344 ~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~~v~--------------~~~~~---~~~~~~l 403 (673)
T 2wv9_A 344 T-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVHDVS--------------SEIPD---RAWSSGF 403 (673)
T ss_dssp C-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEE--------------CCCCS---SCCSSCC
T ss_pred c-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceEEEe--------------eecCH---HHHHHHH
Confidence 8 222223333333333 36789999999998664322110 11211100 00000 0000111
Q ss_pred HHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccE
Q 007481 235 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT 314 (602)
Q Consensus 235 ~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~ 314 (602)
..+.. .++++||||+++..++.++..|...++.+..+||. +|..+++.|++|+.+|||||+++++|||+| +++
T Consensus 404 ~~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~ 476 (673)
T 2wv9_A 404 EWITD--YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASR 476 (673)
T ss_dssp HHHHS--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSE
T ss_pred HHHHh--CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcE
Confidence 12222 46899999999999999999999999999999994 789999999999999999999999999999 999
Q ss_pred EEE--------------------cCCCCChhhHHHHhhhcccC-CCcceEEEEE---ecCcHHHHHHHHHHh
Q 007481 315 VIN--------------------YACPRDLTSYVHRVGRTARA-GREGYAVTFV---TDNDRSLLKAIAKRA 362 (602)
Q Consensus 315 VI~--------------------~d~p~s~~~yiQriGRa~R~-g~~g~~i~l~---~~~d~~~l~~i~~~~ 362 (602)
||| |++|.+..+|+||+||+||. |+.|.|++|+ ++.+...+..++...
T Consensus 477 VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 477 VIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp EEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred EEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 998 67899999999999999998 7899999996 566766666665543
No 48
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2e-36 Score=355.43 Aligned_cols=322 Identities=16% Similarity=0.166 Sum_probs=222.8
Q ss_pred CCCcHHHHHHHHHHhc--CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcC
Q 007481 19 SKPTPIQAACIPLALT--GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 96 (602)
Q Consensus 19 ~~pt~~Q~~~i~~~l~--g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~ 96 (602)
..|+|||.+++..++. +.++|++++||+|||++++..+...+.... ..++|||||+ .|+.||...+..+.
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~----~~rvLIVvP~-sLl~Qw~~E~~~~f--- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGA----AERVLIIVPE-TLQHQWLVEMLRRF--- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS----CCCEEEECCT-TTHHHHHHHHHHHS---
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC----CCeEEEEeCH-HHHHHHHHHHHHHh---
Confidence 4699999999999887 458899999999999998666655554332 2369999999 99999999987653
Q ss_pred CceEEEEECCCCHHHHHH--HHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcH--HHHHHHHHhC
Q 007481 97 DIRCCLVVGGLSTKMQET--ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS--AEIHELVRLC 172 (602)
Q Consensus 97 ~i~v~~~~g~~~~~~~~~--~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~--~~i~~i~~~~ 172 (602)
++.+.++.|+........ ......+|+|+|++.+.........+....|++|||||||++.+.+.. .....+....
T Consensus 224 ~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~ 303 (968)
T 3dmq_A 224 NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLA 303 (968)
T ss_dssp CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHH
T ss_pred CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHh
Confidence 566666555322111000 112346999999998854211111123456889999999999765422 2233333334
Q ss_pred CCCcceeeeeccCCh----hHHHHHHHhcCCCe-----------------------------------------------
Q 007481 173 PKRRQTMLFSATLTE----DVDELIKLSLTKPL----------------------------------------------- 201 (602)
Q Consensus 173 ~~~~q~il~SAT~~~----~~~~l~~~~l~~p~----------------------------------------------- 201 (602)
...++++++||||.+ ++..+.......++
T Consensus 304 ~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~ 383 (968)
T 3dmq_A 304 EHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIE 383 (968)
T ss_dssp TTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSS
T ss_pred hcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhH
Confidence 455679999999953 11111111000000
Q ss_pred --EEecC-----------------------------CCCCCCCCc-----eeeeeee-----------------------
Q 007481 202 --RLSAD-----------------------------PSAKRPSTL-----TEEVVRI----------------------- 222 (602)
Q Consensus 202 --~~~~~-----------------------------~~~~~~~~l-----~~~~~~~----------------------- 222 (602)
..... ........+ ....+.+
T Consensus 384 ~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (968)
T 3dmq_A 384 PLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDR 463 (968)
T ss_dssp TTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGG
T ss_pred HHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHH
Confidence 00000 000000000 0000000
Q ss_pred -------------------chhhhhhHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhh-cCCceeeccCCCCHHHH
Q 007481 223 -------------------RRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL-AALKAAELHGNLTQAQR 282 (602)
Q Consensus 223 -------------------~~~~~~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~-~g~~~~~lhg~~~~~eR 282 (602)
.......+...+..++....+.++||||+++..++.+...|.. .|+.+..+||+|++.+|
T Consensus 464 ~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R 543 (968)
T 3dmq_A 464 ARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIER 543 (968)
T ss_dssp THHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHH
T ss_pred HhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHH
Confidence 0112234566777777777788999999999999999999994 69999999999999999
Q ss_pred HHHHHHHhcCC--ceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEe
Q 007481 283 LEALELFRKQH--VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 348 (602)
Q Consensus 283 ~~il~~F~~g~--~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~ 348 (602)
..+++.|++|+ ++|||||+++++|||+|++++||+||+|+++..|+|++||+||.|+.|.+++++.
T Consensus 544 ~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~ 611 (968)
T 3dmq_A 544 DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVP 611 (968)
T ss_dssp HHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEE
T ss_pred HHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEe
Confidence 99999999998 9999999999999999999999999999999999999999999998886655543
No 49
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=5.9e-36 Score=297.71 Aligned_cols=205 Identities=34% Similarity=0.522 Sum_probs=189.8
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCC--CCCCcEEEEEcChH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK--RIPAIRVLILTPTR 79 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~--~~~~~~vLiL~Ptr 79 (602)
+++|++.++++|..+||..|||+|.++|+.++.|+|+++.+|||||||++|++|++..+..... ...++++|||+||+
T Consensus 33 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~ 112 (242)
T 3fe2_A 33 EANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTR 112 (242)
T ss_dssp TTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSH
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcH
Confidence 6899999999999999999999999999999999999999999999999999999999875431 12466799999999
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccC
Q 007481 80 ELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 159 (602)
Q Consensus 80 ~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~ 159 (602)
+|+.|+++.+..+....++.+..++|+.+...+...+..+++|+|+||++|.+++.+. ...+.++++|||||||++.++
T Consensus 113 ~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~-~~~~~~~~~lViDEah~l~~~ 191 (242)
T 3fe2_A 113 ELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG-KTNLRRTTYLVLDEADRMLDM 191 (242)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHT-SCCCTTCCEEEETTHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC-CCCcccccEEEEeCHHHHhhh
Confidence 9999999999999999999999999999998888888889999999999999999874 467899999999999999999
Q ss_pred CcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCC
Q 007481 160 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADP 207 (602)
Q Consensus 160 gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~ 207 (602)
+|...+..++..+++..|+++||||+++.+..++..++.+|+.+.+..
T Consensus 192 ~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 192 GFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp TCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred CcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 999999999999999999999999999999999999999999887653
No 50
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.4e-37 Score=335.99 Aligned_cols=280 Identities=19% Similarity=0.200 Sum_probs=195.3
Q ss_pred HHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHH
Q 007481 31 LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK 110 (602)
Q Consensus 31 ~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~ 110 (602)
.++.|+|++++||||||||++|++|+++.+..+ ++++||++||++||.|+++.+..+ .+....+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~-----~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~~-- 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR-----RLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAFS-- 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCCC--
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc-----CCeEEEEcchHHHHHHHHHHHhcC------CeEEecccce--
Confidence 356799999999999999999999999987653 347999999999999999887733 2332222110
Q ss_pred HHHHHHcCCCcEEEECcHHHHHHHHcc-------CCCCCCCcceEEEeCccccccCCcHHHHHHHHHhC-CCCcceeeee
Q 007481 111 MQETALRSMPDIVVATPGRMIDHLRNS-------MSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC-PKRRQTMLFS 182 (602)
Q Consensus 111 ~~~~~l~~~~~IvI~Tp~~L~~~l~~~-------~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~-~~~~q~il~S 182 (602)
.|+||+++++++.+. ....+.++++|||||||++ +.+|...+..+...+ +..+|+++||
T Consensus 71 ------------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~S 137 (440)
T 1yks_A 71 ------------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMT 137 (440)
T ss_dssp ------------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEC
T ss_pred ------------eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEe
Confidence 256665554322110 1245788999999999998 333433333333333 3679999999
Q ss_pred ccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHH
Q 007481 183 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKIL 262 (602)
Q Consensus 183 AT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~ 262 (602)
||+++.+..+... ..|+.... ..+...... ..+..+.. .++++||||+++..++.++..
T Consensus 138 AT~~~~~~~~~~~--~~~~~~~~--------------~~~~~~~~~---~~~~~l~~--~~~~~lVF~~s~~~a~~l~~~ 196 (440)
T 1yks_A 138 ATPPGTSDEFPHS--NGEIEDVQ--------------TDIPSEPWN---TGHDWILA--DKRPTAWFLPSIRAANVMAAS 196 (440)
T ss_dssp SSCTTCCCSSCCC--SSCEEEEE--------------CCCCSSCCS---SSCHHHHH--CCSCEEEECSCHHHHHHHHHH
T ss_pred CCCCchhhhhhhc--CCCeeEee--------------eccChHHHH---HHHHHHHh--cCCCEEEEeCCHHHHHHHHHH
Confidence 9998764422211 11111100 001100000 01111211 267999999999999999999
Q ss_pred HhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEE-------------------cCCCCC
Q 007481 263 FGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN-------------------YACPRD 323 (602)
Q Consensus 263 L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~-------------------~d~p~s 323 (602)
|...++.+..+|| .+|..+++.|++|+++|||||+++++|||+| +++||+ |+.|.+
T Consensus 197 L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~ 271 (440)
T 1yks_A 197 LRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRIS 271 (440)
T ss_dssp HHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECC
T ss_pred HHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccC
Confidence 9999999999999 4688999999999999999999999999999 999986 899999
Q ss_pred hhhHHHHhhhcccC-CCcceEEEEE---ecCcHHHHHHHHHHh
Q 007481 324 LTSYVHRVGRTARA-GREGYAVTFV---TDNDRSLLKAIAKRA 362 (602)
Q Consensus 324 ~~~yiQriGRa~R~-g~~g~~i~l~---~~~d~~~l~~i~~~~ 362 (602)
..+|+||+||+||. |..|.|++|+ ++.+...+..+...+
T Consensus 272 ~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 272 ASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp HHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred HHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 99999999999997 6899999996 677777777776543
No 51
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=8.1e-38 Score=339.76 Aligned_cols=272 Identities=16% Similarity=0.210 Sum_probs=197.7
Q ss_pred HHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCH
Q 007481 30 PLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLST 109 (602)
Q Consensus 30 ~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~ 109 (602)
..+..++++|++||||||||++|++|+++.+... ++++|||+||++||.|+++.+. +..+....+....
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~-----~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~ 84 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ-----RLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQR 84 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT-----TCCEEEEECSHHHHHHHHHHTT------TSCEEECC-----
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC-----CCcEEEECchHHHHHHHHHHhc------CceEeEEeccccc
Confidence 3455688999999999999999999999988753 3579999999999999988876 3333332222111
Q ss_pred HHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccc-----cccCCcHHHHHHHHHhCCCCcceeeeecc
Q 007481 110 KMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR-----LLELGFSAEIHELVRLCPKRRQTMLFSAT 184 (602)
Q Consensus 110 ~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~-----l~~~gf~~~i~~i~~~~~~~~q~il~SAT 184 (602)
. -..+..+.++|.+.+...+... ..+.++++|||||||+ ++..+|...+. .+...|+++||||
T Consensus 85 ~-----~t~~~~i~~~~~~~l~~~l~~~--~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~il~SAT 152 (459)
T 2z83_A 85 E-----HQGNEIVDVMCHATLTHRLMSP--NRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAAAIFMTAT 152 (459)
T ss_dssp --------CCCSEEEEEHHHHHHHHHSC--C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEEEECSS
T ss_pred C-----CCCCcEEEEEchHHHHHHhhcc--ccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCccEEEEEcC
Confidence 0 1233457788999888777653 5688999999999998 34443333221 2367899999999
Q ss_pred CChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHh
Q 007481 185 LTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFG 264 (602)
Q Consensus 185 ~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~ 264 (602)
++..+..+.. ...|+...... +........... +.. .++++||||+++..++.++..|.
T Consensus 153 ~~~~~~~~~~--~~~pi~~~~~~--------------~~~~~~~~~~~~----l~~-~~~~~LVF~~s~~~~~~l~~~L~ 211 (459)
T 2z83_A 153 PPGTTDPFPD--SNAPIHDLQDE--------------IPDRAWSSGYEW----ITE-YAGKTVWFVASVKMGNEIAMCLQ 211 (459)
T ss_dssp CTTCCCSSCC--CSSCEEEEECC--------------CCSSCCSSCCHH----HHH-CCSCEEEECSCHHHHHHHHHHHH
T ss_pred CCcchhhhcc--CCCCeEEeccc--------------CCcchhHHHHHH----HHh-cCCCEEEEeCChHHHHHHHHHHH
Confidence 9876432211 12233221100 000000000111 111 26799999999999999999999
Q ss_pred hcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEE--------------------cCCCCCh
Q 007481 265 LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN--------------------YACPRDL 324 (602)
Q Consensus 265 ~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~--------------------~d~p~s~ 324 (602)
..++.+..+||. +|..+++.|++|+.+|||||+++++|||+|+ ++||+ |+.|.|.
T Consensus 212 ~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~ 286 (459)
T 2z83_A 212 RAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITS 286 (459)
T ss_dssp HTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCH
T ss_pred hcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCH
Confidence 999999999995 6788999999999999999999999999999 99999 7799999
Q ss_pred hhHHHHhhhcccCCC-cceEEEEEecC
Q 007481 325 TSYVHRVGRTARAGR-EGYAVTFVTDN 350 (602)
Q Consensus 325 ~~yiQriGRa~R~g~-~g~~i~l~~~~ 350 (602)
.+|+||+||+||.|. .|.+++|+.+.
T Consensus 287 ~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 287 ASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHHHHhccccCCCCCCCCeEEEEEccc
Confidence 999999999999997 99999999875
No 52
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=3.9e-36 Score=337.21 Aligned_cols=305 Identities=15% Similarity=0.156 Sum_probs=188.8
Q ss_pred CCCcHHHHHHHHHHhc----C-CCEEEEcCCCchHHHHHHHHHHHHHHcCC----CCCCCcEEEEEcChHHHHHHHH-HH
Q 007481 19 SKPTPIQAACIPLALT----G-RDICGSAITGSGKTAAFALPTLERLLYRP----KRIPAIRVLILTPTRELAVQVH-SM 88 (602)
Q Consensus 19 ~~pt~~Q~~~i~~~l~----g-~dvii~a~TGSGKT~a~~l~il~~l~~~~----~~~~~~~vLiL~Ptr~La~Q~~-~~ 88 (602)
..|+|+|.++|+.++. | +++++++|||||||+++ ++++..+.... ....+.++||||||++|+.|++ +.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~-~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVA-FQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH-HHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHH-HHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 3699999999999886 4 66899999999999986 55555554432 0113567999999999999998 77
Q ss_pred HHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHcc---CCCCCCCcceEEEeCccccccCCcHHHH
Q 007481 89 IEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS---MSVDLDDLAVLILDEADRLLELGFSAEI 165 (602)
Q Consensus 89 ~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~---~~~~l~~l~llVlDEah~l~~~gf~~~i 165 (602)
+..+ +..+..+.++. .....+|+|+||++|...+... ..+....+++|||||||++...+ ...+
T Consensus 256 ~~~~----~~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~ 322 (590)
T 3h1t_A 256 FTPF----GDARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNW 322 (590)
T ss_dssp CTTT----CSSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------C
T ss_pred HHhc----chhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHH
Confidence 6654 33344444331 3456799999999998876421 13456779999999999987643 2445
Q ss_pred HHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEE-----------------ecCCCCCCCCC--------------
Q 007481 166 HELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRL-----------------SADPSAKRPST-------------- 214 (602)
Q Consensus 166 ~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~-----------------~~~~~~~~~~~-------------- 214 (602)
..++..++ ..++++|||||...........+..++.. ...........
T Consensus 323 ~~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (590)
T 3h1t_A 323 REILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGRE 401 (590)
T ss_dssp HHHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC----------------
T ss_pred HHHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccc
Confidence 66667766 36799999999854332222223322211 10000000000
Q ss_pred ceeeeeeechhhh----hhH----HHHHHHHhhh-cCCCeEEEEeCcHHHHHHHHHHHhhcCCc--------eeeccCCC
Q 007481 215 LTEEVVRIRRMRE----VNQ----EAVLLSLCSK-TFTSKVIIFSGTKQAAHRLKILFGLAALK--------AAELHGNL 277 (602)
Q Consensus 215 l~~~~~~~~~~~~----~~k----~~~l~~l~~~-~~~~kvIIF~~s~~~a~~l~~~L~~~g~~--------~~~lhg~~ 277 (602)
+............ ..+ ...+..++.. ...+++||||+++..|+.++..|...+.. +..+||++
T Consensus 402 ~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~ 481 (590)
T 3h1t_A 402 IPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEE 481 (590)
T ss_dssp -------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTT
T ss_pred cccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCC
Confidence 0000000000000 000 1112222222 34579999999999999999999876543 67899987
Q ss_pred CHHHHHHHHHHHhcCCce---EEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCC
Q 007481 278 TQAQRLEALELFRKQHVD---FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 339 (602)
Q Consensus 278 ~~~eR~~il~~F~~g~~~---iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~ 339 (602)
+. +|..+++.|++|+.+ |||+|+++++|||+|+|++||++++|+|+..|+||+||++|.+.
T Consensus 482 ~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 482 GK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp HH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred hH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 64 799999999998766 88999999999999999999999999999999999999999764
No 53
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=3.7e-35 Score=293.30 Aligned_cols=201 Identities=45% Similarity=0.774 Sum_probs=187.5
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+|+|++.++++|..+||..|+|+|.++|+.++.|+|+++.+|||||||++|++|+++.+.... .++++|||+||++|
T Consensus 47 ~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~---~~~~~lil~Ptr~L 123 (249)
T 3ber_A 47 DLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP---QRLFALVLTPTREL 123 (249)
T ss_dssp GGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC---CSSCEEEECSSHHH
T ss_pred HcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC---CCceEEEEeCCHHH
Confidence 589999999999999999999999999999999999999999999999999999999887653 24579999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCc
Q 007481 82 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF 161 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf 161 (602)
+.|+++.+..++...++.+..++|+.....+...+...++|+|+||++|.+++.+...+.+..+++|||||||++.+++|
T Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~ 203 (249)
T 3ber_A 124 AFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDF 203 (249)
T ss_dssp HHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTC
T ss_pred HHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccCh
Confidence 99999999999988899999999999988888888889999999999999999876567789999999999999999999
Q ss_pred HHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEec
Q 007481 162 SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSA 205 (602)
Q Consensus 162 ~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~ 205 (602)
...+..++..++...|+++||||+++.+.+++..++.+|+.+.+
T Consensus 204 ~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 204 ETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999999999999999999999988765
No 54
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.1e-35 Score=320.43 Aligned_cols=269 Identities=15% Similarity=0.157 Sum_probs=193.6
Q ss_pred cCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHH
Q 007481 34 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 113 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~ 113 (602)
.|+++++++|||||||++|++|+++.+... +.++|||+||++||.|+++.+. ++.+....|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~-----g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~---- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK-----RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS---- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHTT------TSCEEEC----------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC-----CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc----
Confidence 378999999999999999999999776643 3479999999999999987765 4556655554221
Q ss_pred HHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHh-CCCCcceeeeeccCChhHHHH
Q 007481 114 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL-CPKRRQTMLFSATLTEDVDEL 192 (602)
Q Consensus 114 ~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~-~~~~~q~il~SAT~~~~~~~l 192 (602)
.-....-+.+.|.+.+...+.. ...+.++++|||||||++ +.++......+... .+..+|+++||||+++.+..+
T Consensus 66 -~~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~ 141 (431)
T 2v6i_A 66 -ERTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAF 141 (431)
T ss_dssp ----CCCSEEEEEHHHHHHHHHH--TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSS
T ss_pred -cCCCCceEEEEchHHHHHHHhc--CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhh
Confidence 1123456778899988777766 456889999999999997 33334444444433 256899999999999753221
Q ss_pred HHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceee
Q 007481 193 IKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAE 272 (602)
Q Consensus 193 ~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~ 272 (602)
... ..|+.. +. ..+..... .. +..++.. .++++||||+++..++.++..|...++.+..
T Consensus 142 ~~~--~~~i~~-~~-------------~~~~~~~~---~~-~~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~ 200 (431)
T 2v6i_A 142 PPS--NSPIID-EE-------------TRIPDKAW---NS-GYEWITE-FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLY 200 (431)
T ss_dssp CCC--SSCCEE-EE-------------CCCCSSCC---SS-CCHHHHS-CSSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred cCC--CCceee-cc-------------ccCCHHHH---HH-HHHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEE
Confidence 100 111110 00 00000000 00 1111222 2578999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccE-----------------EEEcCCCCChhhHHHHhhhcc
Q 007481 273 LHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT-----------------VINYACPRDLTSYVHRVGRTA 335 (602)
Q Consensus 273 lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~-----------------VI~~d~p~s~~~yiQriGRa~ 335 (602)
+||+ +|.++++.|++|+++|||||+++++|+|+| +.+ ||+++.|.+..+|+||+||+|
T Consensus 201 lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~G 275 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIG 275 (431)
T ss_dssp ESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSS
T ss_pred eCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccC
Confidence 9997 578899999999999999999999999999 544 678899999999999999999
Q ss_pred cCCC-cceEEEEE
Q 007481 336 RAGR-EGYAVTFV 347 (602)
Q Consensus 336 R~g~-~g~~i~l~ 347 (602)
|.|. .|.++++.
T Consensus 276 R~g~~~~~~~~~~ 288 (431)
T 2v6i_A 276 RNPEKLGDIYAYS 288 (431)
T ss_dssp CCTTCCCCEEEEC
T ss_pred CCCCCCCeEEEEc
Confidence 9884 56666665
No 55
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2e-34 Score=278.95 Aligned_cols=198 Identities=34% Similarity=0.623 Sum_probs=181.7
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+|+|++.++++|..+||..|+|+|.++++.++.|+|+++.+|||||||++|++|++..+.... .++++||++||++|
T Consensus 7 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~---~~~~~lil~Pt~~L 83 (206)
T 1vec_A 7 DYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKK---DNIQAMVIVPTREL 83 (206)
T ss_dssp GSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTS---CSCCEEEECSCHHH
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccC---CCeeEEEEeCcHHH
Confidence 689999999999999999999999999999999999999999999999999999998875432 34579999999999
Q ss_pred HHHHHHHHHHHhhcC-CceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC
Q 007481 82 AVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 160 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~-~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g 160 (602)
+.|+++.+..+.... ++.+..++|+.....+...+...++|+|+||++|.+.+.+. ...+..+++||+||||++.+.+
T Consensus 84 ~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~lViDEah~~~~~~ 162 (206)
T 1vec_A 84 ALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG-VAKVDHVQMIVLDEADKLLSQD 162 (206)
T ss_dssp HHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT-CSCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcC-CcCcccCCEEEEEChHHhHhhC
Confidence 999999999998776 78999999999888777778888999999999999998864 4678899999999999999999
Q ss_pred cHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEE
Q 007481 161 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRL 203 (602)
Q Consensus 161 f~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~ 203 (602)
|...+..++..++...|+++||||+++.+.+++..++.+|+.+
T Consensus 163 ~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 163 FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp THHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred cHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999999999999999999999999999999999765
No 56
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=7.4e-35 Score=286.89 Aligned_cols=200 Identities=33% Similarity=0.506 Sum_probs=174.9
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCC---CCCCcEEEEEcChH
Q 007481 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK---RIPAIRVLILTPTR 79 (602)
Q Consensus 3 l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~---~~~~~~vLiL~Ptr 79 (602)
++|++.++++|..+||..|||+|.++|+.++.|+|+++.+|||||||++|++|++..+..... ...++++|||+||+
T Consensus 25 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~ 104 (228)
T 3iuy_A 25 FQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTR 104 (228)
T ss_dssp HTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSH
T ss_pred hccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCH
Confidence 689999999999999999999999999999999999999999999999999999988764311 12456799999999
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccC
Q 007481 80 ELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 159 (602)
Q Consensus 80 ~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~ 159 (602)
+|+.|+++.+..+. ..++.+..++|+.....+...+..+++|+|+||++|.+++... .+.+.++++|||||||++.++
T Consensus 105 ~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~-~~~~~~~~~lViDEah~~~~~ 182 (228)
T 3iuy_A 105 ELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNN-SVNLRSITYLVIDEADKMLDM 182 (228)
T ss_dssp HHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTT-CCCCTTCCEEEECCHHHHHHT
T ss_pred HHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC-CcCcccceEEEEECHHHHhcc
Confidence 99999999999986 5688899999998887777778889999999999999988774 567899999999999999999
Q ss_pred CcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEe
Q 007481 160 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLS 204 (602)
Q Consensus 160 gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~ 204 (602)
+|...+..++..++...|+++||||+++.+..++..++.+|+.+.
T Consensus 183 ~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 183 EFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp TCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred chHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 999999999999999999999999999999999999999998765
No 57
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=3.1e-34 Score=315.32 Aligned_cols=334 Identities=15% Similarity=0.183 Sum_probs=224.1
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhc
Q 007481 20 KPTPIQAACIPLAL----TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 95 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l----~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~ 95 (602)
.|+|||.++++++. .++++|++++||+|||+++ ++++..+.... ...++|||||+ .|+.||.+.+..|+.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~a-i~~i~~~~~~~---~~~~~LIv~P~-~l~~qw~~e~~~~~~- 110 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQT-IAVFSDAKKEN---ELTPSLVICPL-SVLKNWEEELSKFAP- 110 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHH-HHHHHHHHHTT---CCSSEEEEECS-TTHHHHHHHHHHHCT-
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHH-HHHHHHHHhcC---CCCCEEEEccH-HHHHHHHHHHHHHCC-
Confidence 68999999998874 4789999999999999986 45555554332 23469999995 588999999998864
Q ss_pred CCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCCC
Q 007481 96 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175 (602)
Q Consensus 96 ~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~ 175 (602)
+..+..++|+... .....++|+|+||+.+..... +....|++|||||||++.+.+. .....+..++ .
T Consensus 111 -~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~l~-~ 177 (500)
T 1z63_A 111 -HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKELK-S 177 (500)
T ss_dssp -TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGGSCTTS--HHHHHHHTSC-E
T ss_pred -CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccccCCHhH--HHHHHHHhhc-c
Confidence 5667777666421 123457999999999876433 2234689999999999987642 2333344443 4
Q ss_pred cceeeeeccCChh-HHHHH---HHh--------------------------------cCCCeEEecCCC-----CCCCCC
Q 007481 176 RQTMLFSATLTED-VDELI---KLS--------------------------------LTKPLRLSADPS-----AKRPST 214 (602)
Q Consensus 176 ~q~il~SAT~~~~-~~~l~---~~~--------------------------------l~~p~~~~~~~~-----~~~~~~ 214 (602)
.+.+++||||..+ +.++. ... +..|+.+..... ...| .
T Consensus 178 ~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp-~ 256 (500)
T 1z63_A 178 KYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLP-D 256 (500)
T ss_dssp EEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSC-S
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCC-C
Confidence 5789999999532 22221 111 012332221110 0111 1
Q ss_pred ceeeeeeechhh------------------------------------------------------hhhHHHHHHHHhhh
Q 007481 215 LTEEVVRIRRMR------------------------------------------------------EVNQEAVLLSLCSK 240 (602)
Q Consensus 215 l~~~~~~~~~~~------------------------------------------------------~~~k~~~l~~l~~~ 240 (602)
.....+.+.... ...+...+..++..
T Consensus 257 ~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~ 336 (500)
T 1z63_A 257 KIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEE 336 (500)
T ss_dssp EEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHH
Confidence 112222221100 01122223333332
Q ss_pred --cCCCeEEEEeCcHHHHHHHHHHHhhc-CCceeeccCCCCHHHHHHHHHHHhcC-Cce-EEEEcCccccccCcCCccEE
Q 007481 241 --TFTSKVIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQ-HVD-FLIATDVAARGLDIIGVQTV 315 (602)
Q Consensus 241 --~~~~kvIIF~~s~~~a~~l~~~L~~~-g~~~~~lhg~~~~~eR~~il~~F~~g-~~~-iLVaT~~~~~GlDip~v~~V 315 (602)
..+.++||||++...++.+...|... |+.+..+||++++.+|.++++.|++| ... +|++|+++++|||++.+++|
T Consensus 337 ~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~v 416 (500)
T 1z63_A 337 ALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRV 416 (500)
T ss_dssp HHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEE
T ss_pred HHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEE
Confidence 24679999999999999999999885 99999999999999999999999998 555 78999999999999999999
Q ss_pred EEcCCCCChhhHHHHhhhcccCCCcc--eEEEEEecCcHHHHHHHHHHhcCcchhhhhhh
Q 007481 316 INYACPRDLTSYVHRVGRTARAGREG--YAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAE 373 (602)
Q Consensus 316 I~~d~p~s~~~yiQriGRa~R~g~~g--~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~~ 373 (602)
|+||+|||+..|+|++||++|.|..+ .++.|+..++.+..-.-....+..+....++.
T Consensus 417 i~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~~ 476 (500)
T 1z63_A 417 IHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISS 476 (500)
T ss_dssp EESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGGS
T ss_pred EEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999998654 45667777764432211122234444445443
No 58
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=3.7e-35 Score=301.21 Aligned_cols=199 Identities=30% Similarity=0.489 Sum_probs=178.7
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 79 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g--~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr 79 (602)
+|+|++.++++|..+||..|||+|.++||.++.| +|++++||||||||++|++|+++++.... .++++|||+||+
T Consensus 96 ~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~---~~~~~lil~Ptr 172 (300)
T 3fmo_B 96 ELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN---KYPQCLCLSPTY 172 (300)
T ss_dssp GGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTS---CSCCEEEECSSH
T ss_pred hcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccC---CCceEEEEcCcH
Confidence 5899999999999999999999999999999997 99999999999999999999999886542 356799999999
Q ss_pred HHHHHHHHHHHHHhhcC-CceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccccc
Q 007481 80 ELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 158 (602)
Q Consensus 80 ~La~Q~~~~~~~l~~~~-~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~ 158 (602)
+||.|+++.+..+..+. ++.+..++|+...... ....++|+|+||++|++++.+...+.+.++++|||||||+|++
T Consensus 173 eLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~ 249 (300)
T 3fmo_B 173 ELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIA 249 (300)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhh
Confidence 99999999999998764 7888888887654322 2566899999999999999876667889999999999999998
Q ss_pred -CCcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecC
Q 007481 159 -LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSAD 206 (602)
Q Consensus 159 -~gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~ 206 (602)
.+|...+..|+..++..+|+++||||+++.+..++..++.+|+.+.+.
T Consensus 250 ~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 250 TQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp STTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred ccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 789999999999999999999999999999999999999999988763
No 59
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=6.1e-35 Score=292.21 Aligned_cols=213 Identities=35% Similarity=0.578 Sum_probs=184.7
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCC------CCCCcEEEEE
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK------RIPAIRVLIL 75 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~------~~~~~~vLiL 75 (602)
+|+|++.++++|..+||..|+|+|.++|+.++.|+|+++++|||||||++|++|++..+..... ...++++|||
T Consensus 27 ~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil 106 (253)
T 1wrb_A 27 ELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLIL 106 (253)
T ss_dssp GGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEE
T ss_pred hCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEE
Confidence 5789999999999999999999999999999999999999999999999999999999875431 1234689999
Q ss_pred cChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccc
Q 007481 76 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 155 (602)
Q Consensus 76 ~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~ 155 (602)
+||++|+.|+++.+..+....++.++.++|+.....+...+..+++|+|+||++|.+++.+. .+.+..+++|||||||+
T Consensus 107 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~-~~~~~~~~~lViDEah~ 185 (253)
T 1wrb_A 107 APTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN-KISLEFCKYIVLDEADR 185 (253)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT-SBCCTTCCEEEEETHHH
T ss_pred ECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC-CCChhhCCEEEEeCHHH
Confidence 99999999999999999888889999999999888888888889999999999999999874 46788999999999999
Q ss_pred cccCCcHHHHHHHHHh--CCC--CcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCc
Q 007481 156 LLELGFSAEIHELVRL--CPK--RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTL 215 (602)
Q Consensus 156 l~~~gf~~~i~~i~~~--~~~--~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l 215 (602)
+++++|...+..++.. .+. ..|+++||||+++++.+++..++.+|+.+.+.........+
T Consensus 186 ~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i 249 (253)
T 1wrb_A 186 MLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSI 249 (253)
T ss_dssp HHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC---------
T ss_pred HHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCc
Confidence 9999999999999985 344 68999999999999999999999999988776544333333
No 60
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.3e-34 Score=284.88 Aligned_cols=204 Identities=39% Similarity=0.629 Sum_probs=182.2
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCC-CCCCcEEEEEcChHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK-RIPAIRVLILTPTRE 80 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~-~~~~~~vLiL~Ptr~ 80 (602)
+|+|++.++++|..+||..|+|+|.++++.++.|+|+++++|||||||++|++|+++.+..... ...+.++|||+||++
T Consensus 29 ~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~ 108 (236)
T 2pl3_A 29 DFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRE 108 (236)
T ss_dssp GSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHH
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHH
Confidence 5899999999999999999999999999999999999999999999999999999998875321 123567999999999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC
Q 007481 81 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 160 (602)
Q Consensus 81 La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g 160 (602)
|+.|+++.+..+....++.+..++|+.....+...+ ..++|+|+||++|.+++.....+.+.++++|||||||++.+++
T Consensus 109 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~ 187 (236)
T 2pl3_A 109 LAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMG 187 (236)
T ss_dssp HHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCC
Confidence 999999999999888889999999998766555544 5789999999999999987655778899999999999999999
Q ss_pred cHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecC
Q 007481 161 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSAD 206 (602)
Q Consensus 161 f~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~ 206 (602)
|...+..++..++..+|+++||||+++.+.+++..++.+|..+.+.
T Consensus 188 ~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 188 FADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp THHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred cHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 9999999999999999999999999999999999999999888764
No 61
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=290.70 Aligned_cols=197 Identities=39% Similarity=0.618 Sum_probs=181.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCC-CCCcEEEEEcChHHHHH
Q 007481 5 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR-IPAIRVLILTPTRELAV 83 (602)
Q Consensus 5 L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~-~~~~~vLiL~Ptr~La~ 83 (602)
|++.++++|..+||..|+|+|.++|+.++.|+|++++||||||||++|++|+++.+...... ..+.++|||+||++|+.
T Consensus 61 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~ 140 (262)
T 3ly5_A 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAM 140 (262)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988763211 13567999999999999
Q ss_pred HHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHH
Q 007481 84 QVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 163 (602)
Q Consensus 84 Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~ 163 (602)
|+++.+..+....++.+..++|+.....+...+..+++|+|+||++|.+++.+...+.+.++++|||||||++.+++|..
T Consensus 141 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~ 220 (262)
T 3ly5_A 141 QTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEE 220 (262)
T ss_dssp HHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHH
Confidence 99999999998889999999999998888888888899999999999999988766788999999999999999999999
Q ss_pred HHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCe
Q 007481 164 EIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPL 201 (602)
Q Consensus 164 ~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~ 201 (602)
.+..++..++..+|+++||||+++.+..++...+..+.
T Consensus 221 ~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 221 ELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999998887543
No 62
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=3.6e-34 Score=277.19 Aligned_cols=201 Identities=44% Similarity=0.652 Sum_probs=182.1
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+|+|++.++++|..+||..|+|+|.++++.++.|+++++.+|||||||++|++|+++.+........++++||++||++|
T Consensus 5 ~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L 84 (207)
T 2gxq_A 5 DFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTREL 84 (207)
T ss_dssp GSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHH
T ss_pred hcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHH
Confidence 68999999999999999999999999999999999999999999999999999999988654333356789999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCc
Q 007481 82 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF 161 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf 161 (602)
+.|+++.+..+... +.+..++|+.....+...+..+++|+|+||+++.+++.+. .+.+..+++||+||||++.+.+|
T Consensus 85 ~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~iViDEah~~~~~~~ 161 (207)
T 2gxq_A 85 ALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQG-VLDLSRVEVAVLDEADEMLSMGF 161 (207)
T ss_dssp HHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHT-SSCCTTCSEEEEESHHHHHHTTC
T ss_pred HHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcC-CcchhhceEEEEEChhHhhccch
Confidence 99999999988653 7788899998877777777788999999999999998874 56788999999999999999999
Q ss_pred HHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEec
Q 007481 162 SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSA 205 (602)
Q Consensus 162 ~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~ 205 (602)
...+..++..++...|+++||||+++++.+++..++.+|+.+.+
T Consensus 162 ~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 162 EEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 99999999999999999999999999999999999999987754
No 63
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=1.3e-34 Score=283.36 Aligned_cols=201 Identities=32% Similarity=0.552 Sum_probs=181.0
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+|+|++.++++|..+||..|+|+|.++++.++.|+|+++++|||||||++|++|+++.+.... .+.++|||+||++|
T Consensus 8 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~---~~~~~lil~Pt~~L 84 (219)
T 1q0u_A 8 RFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER---AEVQAVITAPTREL 84 (219)
T ss_dssp GSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS---CSCCEEEECSSHHH
T ss_pred hCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCc---CCceEEEEcCcHHH
Confidence 689999999999999999999999999999999999999999999999999999998875432 34579999999999
Q ss_pred HHHHHHHHHHHhhcC----CceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccc
Q 007481 82 AVQVHSMIEKIAQFT----DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 157 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~----~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~ 157 (602)
+.|+++.+..+.... ++.+..++|+.+.......+...++|+|+||++|.+++.+. .+.+..+++|||||||++.
T Consensus 85 ~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~~~~~~~lViDEah~~~ 163 (219)
T 1q0u_A 85 ATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQ-ALDVHTAHILVVDEADLML 163 (219)
T ss_dssp HHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTT-CCCGGGCCEEEECSHHHHH
T ss_pred HHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcC-CCCcCcceEEEEcCchHHh
Confidence 999999999998776 78888999987765555555667899999999999998874 4668889999999999999
Q ss_pred cCCcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecC
Q 007481 158 ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSAD 206 (602)
Q Consensus 158 ~~gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~ 206 (602)
+++|...+..++..++...|+++||||+++++.+++..++.+|..+.+.
T Consensus 164 ~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 164 DMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp HTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred hhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 9999999999999999999999999999999999999999999887654
No 64
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=2.1e-34 Score=285.54 Aligned_cols=201 Identities=34% Similarity=0.562 Sum_probs=172.2
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+|+|++.++++|..+||..|+|+|.++|+.++.|+|+++.+|||||||++|++|+++.+.... .+.++|||+||++|
T Consensus 34 ~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~---~~~~~lil~Pt~~L 110 (237)
T 3bor_A 34 DMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEF---KETQALVLAPTREL 110 (237)
T ss_dssp GSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTS---CSCCEEEECSSHHH
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC---CCceEEEEECcHHH
Confidence 689999999999999999999999999999999999999999999999999999998875432 34579999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCC-CcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC
Q 007481 82 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM-PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 160 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~-~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g 160 (602)
+.|+++.+..++...++.+..++|+.....+...+..+ ++|+|+||++|.+++... .+.+..+++|||||||++.+++
T Consensus 111 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~-~~~~~~~~~lViDEah~~~~~~ 189 (237)
T 3bor_A 111 AQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR-YLSPKWIKMFVLDEADEMLSRG 189 (237)
T ss_dssp HHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTT-SSCSTTCCEEEEESHHHHHHTT
T ss_pred HHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhC-CcCcccCcEEEECCchHhhccC
Confidence 99999999999888889999999988776666556555 899999999999999864 4678889999999999999999
Q ss_pred cHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecC
Q 007481 161 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSAD 206 (602)
Q Consensus 161 f~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~ 206 (602)
|...+..++..++...|+++||||+++++.+++..++.+|+.+.+.
T Consensus 190 ~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 190 FKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp CHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred cHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999999999999999999887653
No 65
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=4.3e-34 Score=321.01 Aligned_cols=293 Identities=19% Similarity=0.207 Sum_probs=215.1
Q ss_pred HHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCH
Q 007481 30 PLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLST 109 (602)
Q Consensus 30 ~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~ 109 (602)
...+.+++++++||||||||+ +++..+.... ..+|++||++||.|+++.+..+ ++.+..++|+...
T Consensus 150 ar~l~rk~vlv~apTGSGKT~----~al~~l~~~~------~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~ 215 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTY----HAIQKYFSAK------SGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERV 215 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHH----HHHHHHHHSS------SEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEE
T ss_pred HHhcCCCEEEEEcCCCCCHHH----HHHHHHHhcC------CeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeE
Confidence 345678999999999999997 3344444331 3599999999999999998875 7788889987543
Q ss_pred HHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCC-CCcceeeeeccCChh
Q 007481 110 KMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQTMLFSATLTED 188 (602)
Q Consensus 110 ~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~-~~~q~il~SAT~~~~ 188 (602)
.. ..-....+++++|++.+. ....+++|||||||++.+.+|...+..++..++ ...+++++|||. +.
T Consensus 216 iv--~TpGr~~~il~~T~e~~~---------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~ 283 (677)
T 3rc3_A 216 TV--QPNGKQASHVSCTVEMCS---------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI-DL 283 (677)
T ss_dssp CC--STTCCCCSEEEEEGGGCC---------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HH
T ss_pred Ee--cCCCcccceeEecHhHhh---------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchH-HH
Confidence 10 000112578888875431 245679999999999999999999998888887 788999999995 33
Q ss_pred HHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCC
Q 007481 189 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAAL 268 (602)
Q Consensus 189 ~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~ 268 (602)
+..+.... ..++.+... .+...+...... + ..+... ....||||++++.++.++..|...++
T Consensus 284 i~~l~~~~-~~~~~v~~~---~r~~~l~~~~~~------------l-~~l~~~-~~g~iIf~~s~~~ie~la~~L~~~g~ 345 (677)
T 3rc3_A 284 VMELMYTT-GEEVEVRDY---KRLTPISVLDHA------------L-ESLDNL-RPGDCIVCFSKNDIYSVSRQIEIRGL 345 (677)
T ss_dssp HHHHHHHH-TCCEEEEEC---CCSSCEEECSSC------------C-CSGGGC-CTTEEEECSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhc-CCceEEEEe---eecchHHHHHHH------------H-HHHHhc-CCCCEEEEcCHHHHHHHHHHHHhcCC
Confidence 44443332 333333221 111111110000 0 011111 34558999999999999999999999
Q ss_pred ceeeccCCCCHHHHHHHHHHHhc--CCceEEEEcCccccccCcCCccEEEEcCC--------------CCChhhHHHHhh
Q 007481 269 KAAELHGNLTQAQRLEALELFRK--QHVDFLIATDVAARGLDIIGVQTVINYAC--------------PRDLTSYVHRVG 332 (602)
Q Consensus 269 ~~~~lhg~~~~~eR~~il~~F~~--g~~~iLVaT~~~~~GlDip~v~~VI~~d~--------------p~s~~~yiQriG 332 (602)
.+..+||+|++.+|..+++.|++ |..+|||||+++++|||+ ++++||++++ |.+..+|+||+|
T Consensus 346 ~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~G 424 (677)
T 3rc3_A 346 ESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAG 424 (677)
T ss_dssp CCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHT
T ss_pred CeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhc
Confidence 99999999999999999999999 889999999999999999 9999999999 889999999999
Q ss_pred hcccCCCc---ceEEEEEecCcHHHHHHHHHHhcCcchh
Q 007481 333 RTARAGRE---GYAVTFVTDNDRSLLKAIAKRAGSKLKS 368 (602)
Q Consensus 333 Ra~R~g~~---g~~i~l~~~~d~~~l~~i~~~~~~~~~~ 368 (602)
||||.|.. |.|+.+ .+.+...++.+.......+..
T Consensus 425 RAGR~g~~g~~G~v~~l-~~~d~~~~~~~~~~~~~~i~~ 462 (677)
T 3rc3_A 425 RAGRFSSRFKEGEVTTM-NHEDLSLLKEILKRPVDPIRA 462 (677)
T ss_dssp TBTCTTSSCSSEEEEES-STTHHHHHHHHHHSCCCCCCC
T ss_pred CCCCCCCCCCCEEEEEE-ecchHHHHHHHHhcCcchhhh
Confidence 99999864 665554 455666666666655444443
No 66
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=4.2e-34 Score=282.06 Aligned_cols=199 Identities=34% Similarity=0.547 Sum_probs=178.8
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+|+|++.++++|..+||..|+|+|.++|+.++.|+|+++++|||||||++|++|++..+.... .+.++|||+||++|
T Consensus 28 ~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~---~~~~~lil~Pt~~L 104 (230)
T 2oxc_A 28 SLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN---LSTQILILAPTREI 104 (230)
T ss_dssp GGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTS---CSCCEEEECSSHHH
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC---CCceEEEEeCCHHH
Confidence 589999999999999999999999999999999999999999999999999999999876442 34579999999999
Q ss_pred HHHHHHHHHHHhhcC-CceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCC
Q 007481 82 AVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 160 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~-~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~g 160 (602)
+.|+++.+..+.... ++.+..++|+.....+...+ ..++|+|+||++|.+++... .+.+.++++|||||||++.++|
T Consensus 105 ~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~-~~~~~~~~~lViDEah~~~~~~ 182 (230)
T 2oxc_A 105 AVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELD-YLNPGSIRLFILDEADKLLEEG 182 (230)
T ss_dssp HHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTT-SSCGGGCCEEEESSHHHHHSTT
T ss_pred HHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcC-CcccccCCEEEeCCchHhhcCc
Confidence 999999999997664 88999999998876655544 57899999999999998764 4677889999999999999998
Q ss_pred -cHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEec
Q 007481 161 -FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSA 205 (602)
Q Consensus 161 -f~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~ 205 (602)
|...+..++..++...|+++||||+++++.+++..++.+|+.+.+
T Consensus 183 ~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 183 SFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp SSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred chHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 999999999999999999999999999999999999999987754
No 67
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=8.5e-34 Score=278.32 Aligned_cols=201 Identities=34% Similarity=0.572 Sum_probs=173.6
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+|+|++.++++|..+||..|+|+|.++++.++.|+|+++.+|||||||++|++|+++.+.... .+.++|||+||++|
T Consensus 18 ~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~---~~~~~lil~Pt~~L 94 (224)
T 1qde_A 18 DMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV---KAPQALMLAPTREL 94 (224)
T ss_dssp GGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTC---CSCCEEEECSSHHH
T ss_pred hcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccC---CCceEEEEECCHHH
Confidence 589999999999999999999999999999999999999999999999999999999875442 34579999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCc
Q 007481 82 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF 161 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf 161 (602)
+.|+++.+..+....++.+..++|+.....+...+.. ++|+|+||++|.+++.+. .+.+..+++|||||||++.+++|
T Consensus 95 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~-~~~~~~~~~iViDEah~~~~~~~ 172 (224)
T 1qde_A 95 ALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRR-RFRTDKIKMFILDEADEMLSSGF 172 (224)
T ss_dssp HHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTT-SSCCTTCCEEEEETHHHHHHTTC
T ss_pred HHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhC-CcchhhCcEEEEcChhHHhhhhh
Confidence 9999999999988889999999998776655544443 899999999999998874 56788999999999999999999
Q ss_pred HHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEecCC
Q 007481 162 SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADP 207 (602)
Q Consensus 162 ~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~ 207 (602)
...+..++..++...|+++||||+++++.+++..++.+|+.+.+..
T Consensus 173 ~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 173 KEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp HHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred HHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 9999999999999999999999999999999999999998876643
No 68
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=3.1e-33 Score=273.67 Aligned_cols=199 Identities=36% Similarity=0.651 Sum_probs=177.8
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 2 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 2 ~l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
+|+|++.++++|..+||..|+|+|.++++.++.|+|+++++|||||||++|++|++..+.... .+.++|||+||++|
T Consensus 18 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~---~~~~~lil~Pt~~L 94 (220)
T 1t6n_A 18 DFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT---GQVSVLVMCHTREL 94 (220)
T ss_dssp TSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCT---TCCCEEEECSCHHH
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccC---CCEEEEEEeCCHHH
Confidence 689999999999999999999999999999999999999999999999999999998875432 34579999999999
Q ss_pred HHHHHHHHHHHhhcC-CceEEEEECCCCHHHHHHHHc-CCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccccc-
Q 007481 82 AVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE- 158 (602)
Q Consensus 82 a~Q~~~~~~~l~~~~-~i~v~~~~g~~~~~~~~~~l~-~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~- 158 (602)
+.|+++.+..+.... ++++..++|+.+...+...+. ..++|+|+||++|.+++.+. .+.+..+++||+||||++.+
T Consensus 95 ~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~lViDEah~~~~~ 173 (220)
T 1t6n_A 95 AFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK-SLNLKHIKHFILDECDKMLEQ 173 (220)
T ss_dssp HHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEESHHHHHSS
T ss_pred HHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhC-CCCcccCCEEEEcCHHHHhcc
Confidence 999999999998775 789999999988766655554 45799999999999998874 56788999999999999987
Q ss_pred CCcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHhcCCCeEEe
Q 007481 159 LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLS 204 (602)
Q Consensus 159 ~gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~ 204 (602)
.+|...+..++..++...|+++||||+++.+.+++..++.+|+.+.
T Consensus 174 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 174 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred cCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 5788899999999999999999999999999999999999998764
No 69
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=3.8e-31 Score=289.69 Aligned_cols=321 Identities=20% Similarity=0.216 Sum_probs=232.3
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 15 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 15 ~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
.+|+ .|++.|.-..-.+..|+ |+.+.||+|||+++.+|++-..+. +..|.||+||..||.|-++++..+..
T Consensus 71 ~lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~------G~~vhVvT~ndyLA~rdae~m~~l~~ 141 (822)
T 3jux_A 71 TLGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI------GKGVHLVTVNDYLARRDALWMGPVYL 141 (822)
T ss_dssp HTSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT------SSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc------CCceEEEeccHHHHHhHHHHHHHHHH
Confidence 4565 49999999998888887 999999999999999999865543 34599999999999999999999999
Q ss_pred cCCceEEEEECC--------------------------------------------------CCHHHHHHHHcCCCcEEE
Q 007481 95 FTDIRCCLVVGG--------------------------------------------------LSTKMQETALRSMPDIVV 124 (602)
Q Consensus 95 ~~~i~v~~~~g~--------------------------------------------------~~~~~~~~~l~~~~~IvI 124 (602)
+.|++|++++.. .+...... ...+||+.
T Consensus 142 ~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~--aY~~DItY 219 (822)
T 3jux_A 142 FLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKE--AYLCDVTY 219 (822)
T ss_dssp HTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHH--HHHSSEEE
T ss_pred HhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHH--HhcCCCEE
Confidence 999999999982 11111111 12369999
Q ss_pred ECcHHH-HHHHHccCCC-----CCCCcceEEEeCccccc-cC--------C------------------------c----
Q 007481 125 ATPGRM-IDHLRNSMSV-----DLDDLAVLILDEADRLL-EL--------G------------------------F---- 161 (602)
Q Consensus 125 ~Tp~~L-~~~l~~~~~~-----~l~~l~llVlDEah~l~-~~--------g------------------------f---- 161 (602)
+|...| .|+|+.+... -...+.+.||||+|.++ +. | |
T Consensus 220 gTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vde 299 (822)
T 3jux_A 220 GTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDE 299 (822)
T ss_dssp EEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECC
T ss_pred ccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEc
Confidence 998776 6788765322 24567899999999732 10 0 0
Q ss_pred -----------------------------HHHHHHH---HH---hCC---------------------------------
Q 007481 162 -----------------------------SAEIHEL---VR---LCP--------------------------------- 173 (602)
Q Consensus 162 -----------------------------~~~i~~i---~~---~~~--------------------------------- 173 (602)
...+..+ +. .+.
T Consensus 300 k~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLH 379 (822)
T 3jux_A 300 KARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLH 379 (822)
T ss_dssp SSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHH
T ss_pred ccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHH
Confidence 0000111 00 000
Q ss_pred ----------------------------CCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceee-eeeech
Q 007481 174 ----------------------------KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEE-VVRIRR 224 (602)
Q Consensus 174 ----------------------------~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~-~~~~~~ 224 (602)
.-..+.+||+|+.....++...+-.. .+.+ +.........+. .+..
T Consensus 380 QaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~I-Ptnkp~~R~d~~d~vy~-- 454 (822)
T 3jux_A 380 QAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVI-PTHKPMIRKDHDDLVFR-- 454 (822)
T ss_dssp HHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEEC-CCSSCCCCEECCCEEES--
T ss_pred HHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEE-CCCCCcceeecCcEEEe--
Confidence 01258899999998887776666333 2222 222211222221 2222
Q ss_pred hhhhhHHHHHHHHhhh--cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc
Q 007481 225 MREVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 302 (602)
Q Consensus 225 ~~~~~k~~~l~~l~~~--~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~ 302 (602)
....+...+...+.. ..+.++||||+|+..++.++..|...|+++..|||+..+.++..+...|+.| .|+|||++
T Consensus 455 -t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdm 531 (822)
T 3jux_A 455 -TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNM 531 (822)
T ss_dssp -SHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETT
T ss_pred -cHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcch
Confidence 233444455554433 2467999999999999999999999999999999986555555555556555 69999999
Q ss_pred cccccCcC--------CccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHH
Q 007481 303 AARGLDII--------GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 354 (602)
Q Consensus 303 ~~~GlDip--------~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~ 354 (602)
++||+||+ +..+||+++.|.|...|+||+|||||+|.+|.+++|++..|.-+
T Consensus 532 AgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~ 591 (822)
T 3jux_A 532 AGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLL 591 (822)
T ss_dssp TTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHH
T ss_pred hhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHH
Confidence 99999998 66799999999999999999999999999999999999988544
No 70
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=280.26 Aligned_cols=203 Identities=34% Similarity=0.541 Sum_probs=174.1
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHH
Q 007481 3 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 82 (602)
Q Consensus 3 l~L~~~ll~~l~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La 82 (602)
++|++.++++|..+||..|||+|.++|+.++.|+|+++.+|||||||++|++|++..+.... ..++++|||+||++|+
T Consensus 34 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~--~~~~~~lil~Pt~~L~ 111 (245)
T 3dkp_A 34 YKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPA--NKGFRALIISPTRELA 111 (245)
T ss_dssp HCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCC--SSSCCEEEECSSHHHH
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcc--cCCceEEEEeCCHHHH
Confidence 58999999999999999999999999999999999999999999999999999999885432 2456899999999999
Q ss_pred HHHHHHHHHHhhcCCceEEEEECCCCHHHHH-HHHcCCCcEEEECcHHHHHHHHccC-CCCCCCcceEEEeCcccccc--
Q 007481 83 VQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE-TALRSMPDIVVATPGRMIDHLRNSM-SVDLDDLAVLILDEADRLLE-- 158 (602)
Q Consensus 83 ~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~-~~l~~~~~IvI~Tp~~L~~~l~~~~-~~~l~~l~llVlDEah~l~~-- 158 (602)
.|+++.+..+....++.+..++|+....... ......++|+|+||++|.+++.+.. .+.+.++++|||||||++.+
T Consensus 112 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~ 191 (245)
T 3dkp_A 112 SQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDG 191 (245)
T ss_dssp HHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC
T ss_pred HHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccc
Confidence 9999999999888888888777654322211 1234568999999999999998753 46788999999999999998
Q ss_pred -CCcHHHHHHHHHhC-CCCcceeeeeccCChhHHHHHHHhcCCCeEEecCC
Q 007481 159 -LGFSAEIHELVRLC-PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADP 207 (602)
Q Consensus 159 -~gf~~~i~~i~~~~-~~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~ 207 (602)
.+|...+..++..+ +...|+++||||+++++..++..++.+|+.+.+..
T Consensus 192 ~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 192 KTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp --CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred cccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 57888888888776 45789999999999999999999999999887754
No 71
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.3e-31 Score=300.48 Aligned_cols=325 Identities=17% Similarity=0.188 Sum_probs=219.4
Q ss_pred CCcHHHHHHHHHHh---------cCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCC-CCcEEEEEcChHHHHHHHHHHH
Q 007481 20 KPTPIQAACIPLAL---------TGRDICGSAITGSGKTAAFALPTLERLLYRPKRI-PAIRVLILTPTRELAVQVHSMI 89 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l---------~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~-~~~~vLiL~Ptr~La~Q~~~~~ 89 (602)
.|+|||.+++.++. .+.++|+..+||+|||+.++..+...+...+... ...++|||||+ .|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 68999999999885 3567899999999999987555554443332211 12469999998 7889999999
Q ss_pred HHHhhcCCceEEEEECCCCHHHH---HHHHc-----CCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCc
Q 007481 90 EKIAQFTDIRCCLVVGGLSTKMQ---ETALR-----SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF 161 (602)
Q Consensus 90 ~~l~~~~~i~v~~~~g~~~~~~~---~~~l~-----~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf 161 (602)
..|+.. .+.+..++++...... ...+. ...+|+|+||+.+..... .+....|++|||||||++.+..
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~---~l~~~~~~~vI~DEaH~ikn~~- 208 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE---VLHKGKVGLVICDEGHRLKNSD- 208 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT---TTTTSCCCEEEETTGGGCCTTC-
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH---HhhcCCccEEEEECceecCChh-
Confidence 998764 4556666665432211 11111 247899999999876432 2344578899999999998764
Q ss_pred HHHHHHHHHhCCCCcceeeeeccCChhH-H---HHH---------------HHh--------------------------
Q 007481 162 SAEIHELVRLCPKRRQTMLFSATLTEDV-D---ELI---------------KLS-------------------------- 196 (602)
Q Consensus 162 ~~~i~~i~~~~~~~~q~il~SAT~~~~~-~---~l~---------------~~~-------------------------- 196 (602)
......+. .++ ....+++||||-.+- . .+. ..+
T Consensus 209 ~~~~~al~-~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 286 (644)
T 1z3i_X 209 NQTYLALN-SMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQE 286 (644)
T ss_dssp HHHHHHHH-HHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHH
T ss_pred hHHHHHHH-hcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHH
Confidence 22222222 232 456799999985320 0 000 000
Q ss_pred ---cCCCeEEecCC---CCCCCCCceeeeeeechh---------------------------------------------
Q 007481 197 ---LTKPLRLSADP---SAKRPSTLTEEVVRIRRM--------------------------------------------- 225 (602)
Q Consensus 197 ---l~~p~~~~~~~---~~~~~~~l~~~~~~~~~~--------------------------------------------- 225 (602)
+..|+.+.-.. ....| ......+.+...
T Consensus 287 L~~~l~~~~lRR~k~~v~~~LP-~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l 365 (644)
T 1z3i_X 287 LISIVNRCLIRRTSDILSKYLP-VKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPAL 365 (644)
T ss_dssp HHHHHHHHEECCCGGGGGGTSC-CEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHHHHHHhhHHhHhhhCC-CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHH
Confidence 00011110000 00001 011111111000
Q ss_pred ------------------------------hhhhHHHHHHHHhh---hcCCCeEEEEeCcHHHHHHHHHHHhhcCCceee
Q 007481 226 ------------------------------REVNQEAVLLSLCS---KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAE 272 (602)
Q Consensus 226 ------------------------------~~~~k~~~l~~l~~---~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~ 272 (602)
....+...+..++. ...+.++||||++...++.+..+|...|+.+..
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~ 445 (644)
T 1z3i_X 366 IYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVR 445 (644)
T ss_dssp HHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEE
Confidence 00112223333332 234789999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHhcCCce---EEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCc--ceEEEEE
Q 007481 273 LHGNLTQAQRLEALELFRKQHVD---FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE--GYAVTFV 347 (602)
Q Consensus 273 lhg~~~~~eR~~il~~F~~g~~~---iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~--g~~i~l~ 347 (602)
+||++++.+|..+++.|++|... +||+|+++++|||++++++||+||+|||+..|.|++||++|.|+. ..++.|+
T Consensus 446 l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv 525 (644)
T 1z3i_X 446 LDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLL 525 (644)
T ss_dssp ECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEE
T ss_pred EeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEE
Confidence 99999999999999999998654 899999999999999999999999999999999999999999865 4566678
Q ss_pred ecCcHH
Q 007481 348 TDNDRS 353 (602)
Q Consensus 348 ~~~d~~ 353 (602)
..++.+
T Consensus 526 ~~~tiE 531 (644)
T 1z3i_X 526 STGTIE 531 (644)
T ss_dssp ETTSHH
T ss_pred ECCCHH
Confidence 877543
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=3e-32 Score=318.04 Aligned_cols=327 Identities=16% Similarity=0.110 Sum_probs=218.1
Q ss_pred CCCcHHHHHHHHHHhc--------------CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHH
Q 007481 19 SKPTPIQAACIPLALT--------------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 84 (602)
Q Consensus 19 ~~pt~~Q~~~i~~~l~--------------g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q 84 (602)
..|+|+|.+|++.++. +++++++++||||||+++ ++++..+ .... ...++|||||+++|+.|
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll-~~~~--~~~rvLvlvpr~eL~~Q 345 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLA-TELD--FIDKVFFVVDRKDLDYQ 345 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHH-TTCT--TCCEEEEEECGGGCCHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHH-HhcC--CCceEEEEeCcHHHHHH
Confidence 3599999999999886 368999999999999996 6776544 3221 23589999999999999
Q ss_pred HHHHHHHHhhcCCceEEEEECCCCHHHHHHHH-cCCCcEEEECcHHHHHHHHccCC-CCCCCcceEEEeCccccccCCcH
Q 007481 85 VHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL-RSMPDIVVATPGRMIDHLRNSMS-VDLDDLAVLILDEADRLLELGFS 162 (602)
Q Consensus 85 ~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l-~~~~~IvI~Tp~~L~~~l~~~~~-~~l~~l~llVlDEah~l~~~gf~ 162 (602)
+.+.+..+... .+.++.+.......+ ...++|+|+||++|.+++..... ..+..+.+||+||||++...
T Consensus 346 ~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~--- 416 (1038)
T 2w00_A 346 TMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG--- 416 (1038)
T ss_dssp HHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH---
T ss_pred HHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch---
Confidence 99999887542 123444444444445 35789999999999998875321 23556789999999997642
Q ss_pred HHHHHHHHhCCCCcceeeeeccCChhH---------------------HHHHHHhcCCCeEEecCCCCCCCCC--c--e-
Q 007481 163 AEIHELVRLCPKRRQTMLFSATLTEDV---------------------DELIKLSLTKPLRLSADPSAKRPST--L--T- 216 (602)
Q Consensus 163 ~~i~~i~~~~~~~~q~il~SAT~~~~~---------------------~~l~~~~l~~p~~~~~~~~~~~~~~--l--~- 216 (602)
.....|...+|. .++++|||||.... .+.+......|+.+........... . .
T Consensus 417 ~~~~~I~~~~p~-a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~ 495 (1038)
T 2w00_A 417 EAQKNLKKKFKR-YYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDE 495 (1038)
T ss_dssp HHHHHHHHHCSS-EEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCH
T ss_pred HHHHHHHHhCCc-ccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccH
Confidence 335566677764 78999999997432 2222333333443322110000000 0 0
Q ss_pred eeeeee---chhhhhhHH-HHHHHHhh----h-------cCCCeEEEEeCcHHHHHHHHHHHhhcC------------Cc
Q 007481 217 EEVVRI---RRMREVNQE-AVLLSLCS----K-------TFTSKVIIFSGTKQAAHRLKILFGLAA------------LK 269 (602)
Q Consensus 217 ~~~~~~---~~~~~~~k~-~~l~~l~~----~-------~~~~kvIIF~~s~~~a~~l~~~L~~~g------------~~ 269 (602)
..+..+ .......+. .++..++. . ..+.++||||+|+..|..++..|...+ ++
T Consensus 496 ~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k 575 (1038)
T 2w00_A 496 KKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLR 575 (1038)
T ss_dssp HHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCc
Confidence 000000 000000111 11111221 1 134589999999999999999997654 45
Q ss_pred e-eeccCC----------C----------CH-----------------------------HHHHHHHHHHhcCCceEEEE
Q 007481 270 A-AELHGN----------L----------TQ-----------------------------AQRLEALELFRKQHVDFLIA 299 (602)
Q Consensus 270 ~-~~lhg~----------~----------~~-----------------------------~eR~~il~~F~~g~~~iLVa 299 (602)
+ ..+||+ + ++ .+|..++.+|++|+++|||+
T Consensus 576 ~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIv 655 (1038)
T 2w00_A 576 IATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIV 655 (1038)
T ss_dssp EEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEE
T ss_pred EEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEE
Confidence 5 455542 2 22 24888999999999999999
Q ss_pred cCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCc----ceEEEEEecCcHHHHHHHHHH
Q 007481 300 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE----GYAVTFVTDNDRSLLKAIAKR 361 (602)
Q Consensus 300 T~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~----g~~i~l~~~~d~~~l~~i~~~ 361 (602)
|+++.+|+|+|.+ +|+++|.|.+...|+|++||++|.+.. |.++.|++ ....+..++...
T Consensus 656 vd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~-~~~~l~~Al~~y 719 (1038)
T 2w00_A 656 VGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD-LERSTIDAITLF 719 (1038)
T ss_dssp SSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC-CHHHHHHHHHHT
T ss_pred cchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc-cHHHHHHHHHHH
Confidence 9999999999999 678899999999999999999997653 67776665 334444445433
No 73
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-32 Score=312.27 Aligned_cols=330 Identities=18% Similarity=0.223 Sum_probs=225.9
Q ss_pred CCCcHHHHHHHHHHh----cCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 19 SKPTPIQAACIPLAL----TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 19 ~~pt~~Q~~~i~~~l----~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
..|+|||.+++.+++ .++++|++.+||+|||+.++..+...+.... ...++||||| ..|+.||.+.+..|+
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~---~~~~~LIV~P-~sll~qW~~E~~~~~- 309 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR---QNGPHIIVVP-LSTMPAWLDTFEKWA- 309 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS---CCSCEEEECC-TTTHHHHHHHHHHHS-
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC---CCCCEEEEEC-chHHHHHHHHHHHHC-
Confidence 368999999999887 6899999999999999886444433332221 2235899999 567899999999886
Q ss_pred cCCceEEEEECCCCHHHHHHH------------HcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcH
Q 007481 95 FTDIRCCLVVGGLSTKMQETA------------LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS 162 (602)
Q Consensus 95 ~~~i~v~~~~g~~~~~~~~~~------------l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~ 162 (602)
.++.+.+.+|+......... ....++|+|+||+.+...... +....|++|||||||++.+...
T Consensus 310 -p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~lkn~~s- 384 (800)
T 3mwy_W 310 -PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHRLKNAES- 384 (800)
T ss_dssp -TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGGGCCSSS-
T ss_pred -CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhhhcCchh-
Confidence 46777777776554333221 224578999999999765432 1223588999999999976432
Q ss_pred HHHHHHHHhCCCCcceeeeeccCCh----hHHHHHHHhcCC-----------------------------CeEEecCCCC
Q 007481 163 AEIHELVRLCPKRRQTMLFSATLTE----DVDELIKLSLTK-----------------------------PLRLSADPSA 209 (602)
Q Consensus 163 ~~i~~i~~~~~~~~q~il~SAT~~~----~~~~l~~~~l~~-----------------------------p~~~~~~~~~ 209 (602)
.....+..+ .....+++||||.. ++..+....... |+.+......
T Consensus 385 -~~~~~l~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~d 462 (800)
T 3mwy_W 385 -SLYESLNSF-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKD 462 (800)
T ss_dssp -HHHHHHTTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGG
T ss_pred -HHHHHHHHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHh
Confidence 223333333 34567899999932 222222222111 1111100000
Q ss_pred --CCCCCceeeeeeechh--------------------------------------------------------------
Q 007481 210 --KRPSTLTEEVVRIRRM-------------------------------------------------------------- 225 (602)
Q Consensus 210 --~~~~~l~~~~~~~~~~-------------------------------------------------------------- 225 (602)
...+......+.+...
T Consensus 463 v~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~ 542 (800)
T 3mwy_W 463 VEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKM 542 (800)
T ss_dssp GTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----C
T ss_pred hhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccc
Confidence 0011111111111100
Q ss_pred ----------hhhhHHHHHHHHhhh--cCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCC
Q 007481 226 ----------REVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 293 (602)
Q Consensus 226 ----------~~~~k~~~l~~l~~~--~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~ 293 (602)
....+...+..++.. ..+.++||||.....++.|..+|...|+.+..+||+++..+|..+++.|+++.
T Consensus 543 ~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~ 622 (800)
T 3mwy_W 543 TRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPD 622 (800)
T ss_dssp CSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTT
T ss_pred cHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCC
Confidence 011233334444433 24679999999999999999999999999999999999999999999999865
Q ss_pred c---eEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCc--ceEEEEEecCcH--HHHHHHHH
Q 007481 294 V---DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE--GYAVTFVTDNDR--SLLKAIAK 360 (602)
Q Consensus 294 ~---~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~--g~~i~l~~~~d~--~~l~~i~~ 360 (602)
. .+|++|.++++|||++.+++||+||+|||+..++|++||++|.|+. ..++.|++.++. .++..+.+
T Consensus 623 ~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~ 696 (800)
T 3mwy_W 623 SNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARK 696 (800)
T ss_dssp CSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHH
T ss_pred CCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHH
Confidence 4 4899999999999999999999999999999999999999999864 566777888754 34443333
No 74
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=100.00 E-value=9.9e-33 Score=311.70 Aligned_cols=259 Identities=18% Similarity=0.208 Sum_probs=142.4
Q ss_pred CCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhh-cCCCeEEEEeCc
Q 007481 174 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK-TFTSKVIIFSGT 252 (602)
Q Consensus 174 ~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~-~~~~kvIIF~~s 252 (602)
...|+++||||+++..... ....+.... ++..+....+.+.+... ....++..+... ..+.++||||+|
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~-----r~~~l~~p~i~v~~~~~-~~~~Ll~~l~~~~~~~~~vlVf~~t 448 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----SGRVVEQII-----RPTGLLDPLVRVKPTEN-QILDLMEGIRERAARGERTLVTVLT 448 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----CSEEEEECS-----CTTCCCCCEEEEECSTT-HHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred hcCCEEEEecCCCHHHHHh----hhCeeeeee-----ccCCCCCCeEEEecccc-hHHHHHHHHHHHHhcCCEEEEEECC
Confidence 3578999999998654221 111111111 22223233333333221 122222323222 246799999999
Q ss_pred HHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCC-----CCChhhH
Q 007481 253 KQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC-----PRDLTSY 327 (602)
Q Consensus 253 ~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~-----p~s~~~y 327 (602)
+..++.++.+|...|+.+..+||++++.+|.++++.|+.|+++|||||+++++|+|+|+|++||++|. |.|..+|
T Consensus 449 ~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~ 528 (664)
T 1c4o_A 449 VRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 528 (664)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHH
T ss_pred HHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred HHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007481 328 VHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAE 407 (602)
Q Consensus 328 iQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~e 407 (602)
+||+||+||. ..|.+++|+++.+..+.+.+.+.......+..++......+....+.+.+.+. ..+...... ...
T Consensus 529 iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~p~~~~~~i~~~~~---~~~~~~~~~-~~~ 603 (664)
T 1c4o_A 529 IQTIGRAARN-ARGEVWLYADRVSEAMQRAIEETNRRRALQEAYNLEHGITPETVRKEVRAVIR---PEGYEEAPL-EAD 603 (664)
T ss_dssp HHHHGGGTTS-TTCEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC-------------------------
T ss_pred HHHHCccCcC-CCCEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhh---hhhcchhhh-hhh
Confidence 9999999998 48999999999999988888765533222222222211111111111122111 000000000 012
Q ss_pred HHHHHHHHHHHhHHHHhcCccccc-cccHHHHHHHHHHhHHHHHc
Q 007481 408 MEATKAENMIAHKEEIFARPKRTW-FVTEKEKKLAVKADKASIEK 451 (602)
Q Consensus 408 ~~~~~~e~~~~~~~~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~ 451 (602)
+.....+..+...+..|...++.+ |+. ++..++.+..|+.
T Consensus 604 ~~~~~~~~~i~~l~~~m~~aa~~l~fe~----Aa~lRd~i~~l~~ 644 (664)
T 1c4o_A 604 LSGEDLRERIAELELAMWQAAEALDFER----AARLRDEIRALEA 644 (664)
T ss_dssp ---------------------------------------------
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcChHH----HHHHHHHHHHHHH
Confidence 233344556666777777777766 655 7788888877663
No 75
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.97 E-value=1.4e-31 Score=302.25 Aligned_cols=260 Identities=17% Similarity=0.231 Sum_probs=163.0
Q ss_pred CCcceeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhh-cCCCeEEEEeCc
Q 007481 174 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK-TFTSKVIIFSGT 252 (602)
Q Consensus 174 ~~~q~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~-~~~~kvIIF~~s 252 (602)
...|+++||||+++..... ....+.... ++..+....+.+..... ....++..+... ..+.++||||+|
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~-----r~~~l~~p~i~v~~~~~-~~~~Ll~~l~~~~~~~~~vlVf~~t 454 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQII-----RPTGLLDPLIDVRPIEG-QIDDLIGEIQARIERNERVLVTTLT 454 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECC-----CTTCCCCCEEEEECSTT-HHHHHHHHHHHHHTTTCEEEEECSS
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeee-----cccCCCCCeEEEecccc-hHHHHHHHHHHHHhcCCeEEEEECC
Confidence 4678999999998654222 112222211 22222222233332221 122223333332 246799999999
Q ss_pred HHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCC-----CCChhhH
Q 007481 253 KQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC-----PRDLTSY 327 (602)
Q Consensus 253 ~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~-----p~s~~~y 327 (602)
+..++.++..|...|+.+..+||++++.+|..+++.|+.|+++|||||+++++|+|+|++++||++|. |.+..+|
T Consensus 455 ~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~ 534 (661)
T 2d7d_A 455 KKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 534 (661)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred HHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcchhhhhhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007481 328 VHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQ-------SITKWSKIIEQMEDQVAAILQEEREE 400 (602)
Q Consensus 328 iQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~~e~~~ 400 (602)
+||+||+||. ..|.+++|+++.+..+.+.+.+....+..+..++.. ....+...++ ........ ......
T Consensus 535 iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~~~~~r~i~~~~~~~~~~~p~~~~~~i~~~~~-~~~~~~~~-~~~~~~ 611 (661)
T 2d7d_A 535 IQTIGRAARN-AEGRVIMYADKITKSMEIAINETKRRREQQERFNEEHGITPKTINKEIRDVIR-ATVAAEDK-AEYKTK 611 (661)
T ss_dssp HHHHHTTTTS-TTCEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCC-----------------------
T ss_pred HHHhCcccCC-CCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhhHHHHHHh-hccccccc-cccchh
Confidence 9999999997 799999999999988888777654332222222221 1111222221 00000000 000000
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhcCccccc-cccHHHHHHHHHHhHHHHH
Q 007481 401 RILRKAEMEATKAENMIAHKEEIFARPKRTW-FVTEKEKKLAVKADKASIE 450 (602)
Q Consensus 401 ~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~ 450 (602)
.......+.......++......|...++.+ |+. ++..++.+.+|+
T Consensus 612 ~~~~~~~~~~~~~~~~i~~l~~~m~~aa~~~~fe~----Aa~~Rd~i~~l~ 658 (661)
T 2d7d_A 612 AAPKLSKMTKKERQKVVEQMEHEMKEAAKALDFER----AAELRDLLLELK 658 (661)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHTTCHHH----HHHHHHHC----
T ss_pred hhhhhhhCCHHHHHHHHHHHHHHHHHHHHccCHHH----HHHHHHHHHHHH
Confidence 0000012233344556666777777777666 654 777777777664
No 76
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=2.6e-26 Score=255.86 Aligned_cols=132 Identities=21% Similarity=0.227 Sum_probs=115.0
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 15 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 15 ~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
.+|| +|||+|..++|.+++|+ |+.+.||||||++|.+|++...+. +..++||+||++||.|.++++..+..
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~------G~qv~VvTPTreLA~Qdae~m~~l~~ 145 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT------GKGVHVVTVNDYLARRDAEWMGPVYR 145 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT------CSCCEEEESSHHHHHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh------CCCEEEEeCCHHHHHHHHHHHHHHHH
Confidence 5799 99999999999999998 999999999999999999755442 33699999999999999999999999
Q ss_pred cCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHH-HHHHHccC-----CCCCC---CcceEEEeCccccc
Q 007481 95 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLD---DLAVLILDEADRLL 157 (602)
Q Consensus 95 ~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L-~~~l~~~~-----~~~l~---~l~llVlDEah~l~ 157 (602)
++++++++++|+.+... ......++|+|+||++| +|+++... .+.+. .+.++||||||.|+
T Consensus 146 ~lGLsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 146 GLGLSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp TTTCCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred hcCCeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 99999999999988543 33345689999999999 89998753 24567 89999999999976
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.94 E-value=8.2e-26 Score=210.53 Aligned_cols=154 Identities=33% Similarity=0.560 Sum_probs=141.0
Q ss_pred CCCCceeeeeeechhhhhhHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHh
Q 007481 211 RPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 290 (602)
Q Consensus 211 ~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~ 290 (602)
.+.++.+.++.+. ...+...|..++....++++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|+
T Consensus 6 ~~~~i~~~~~~~~---~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~ 82 (163)
T 2hjv_A 6 TTRNIEHAVIQVR---EENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK 82 (163)
T ss_dssp CCCCEEEEEEECC---GGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CcccceEEEEECC---hHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 4456777777764 3567777888887777889999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcch
Q 007481 291 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 367 (602)
Q Consensus 291 ~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~~ 367 (602)
+|.++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+.+.+...++.+.+.++.++.
T Consensus 83 ~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 159 (163)
T 2hjv_A 83 RGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQ 159 (163)
T ss_dssp TTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCE
T ss_pred cCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988776554
No 78
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=2.2e-25 Score=210.10 Aligned_cols=157 Identities=27% Similarity=0.429 Sum_probs=138.5
Q ss_pred CCCCceeeeeeechhhhhhHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHh
Q 007481 211 RPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 290 (602)
Q Consensus 211 ~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~ 290 (602)
.+..+.+.++.+.. ...+...|..++.....+++||||+++..++.++..|...|+.+..+||++++.+|..+++.|+
T Consensus 4 ~~~~i~q~~~~~~~--~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~ 81 (175)
T 2rb4_A 4 TLNNIRQYYVLCEH--RKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFR 81 (175)
T ss_dssp CBCCEEEEEEECSS--HHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHH
T ss_pred ccCCceEEEEEcCC--hHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 35577888887753 2346777888887777889999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEcCccccccCcCCccEEEEcCCC------CChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcC
Q 007481 291 KQHVDFLIATDVAARGLDIIGVQTVINYACP------RDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGS 364 (602)
Q Consensus 291 ~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p------~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~ 364 (602)
+|.++|||||+++++|+|+|++++||+||+| .+...|+||+||+||.|..|.+++|+++.+...+..+.+.++.
T Consensus 82 ~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 161 (175)
T 2rb4_A 82 DGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNS 161 (175)
T ss_dssp TTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred cCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999 8999999999999999999999999999999999999998877
Q ss_pred cchhh
Q 007481 365 KLKSR 369 (602)
Q Consensus 365 ~~~~~ 369 (602)
.+...
T Consensus 162 ~~~~~ 166 (175)
T 2rb4_A 162 SIKQL 166 (175)
T ss_dssp CCEEE
T ss_pred ccccc
Confidence 66543
No 79
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.93 E-value=1.8e-25 Score=213.70 Aligned_cols=166 Identities=31% Similarity=0.463 Sum_probs=128.5
Q ss_pred HHHhcCCCeEEecCCCCCCCCCceeeeeeechhhhhhHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceee
Q 007481 193 IKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAE 272 (602)
Q Consensus 193 ~~~~l~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~ 272 (602)
.+.++.+|+.+.+.........+.+.++.+.. ..+...|..++... ++++||||+++..++.++..|...|+.+..
T Consensus 8 ~~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~---~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~ 83 (191)
T 2p6n_A 8 SSGVDLGTENLYFQSMGAASLDVIQEVEYVKE---EAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVA 83 (191)
T ss_dssp --------------------CCSEEEEEECCG---GGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEE
T ss_pred cccccCCCEEEEECCCCCCCcCceEEEEEcCh---HHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 35677788888877666667788888877653 45667777777654 568999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecC-c
Q 007481 273 LHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN-D 351 (602)
Q Consensus 273 lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~-d 351 (602)
+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|..|.+++|+++. +
T Consensus 84 lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~ 163 (191)
T 2p6n_A 84 IHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACD 163 (191)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSC
T ss_pred EeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999986 6
Q ss_pred HHHHHHHHHHh
Q 007481 352 RSLLKAIAKRA 362 (602)
Q Consensus 352 ~~~l~~i~~~~ 362 (602)
..++..+.+.+
T Consensus 164 ~~~~~~l~~~l 174 (191)
T 2p6n_A 164 ESVLMDLKALL 174 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776543
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.93 E-value=2.4e-25 Score=209.29 Aligned_cols=154 Identities=29% Similarity=0.463 Sum_probs=138.3
Q ss_pred CCCceeeeeeechhhhhhHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhc
Q 007481 212 PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 291 (602)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~ 291 (602)
+..+.+.++.+.. ..+...|..++.....+++||||+++..++.++..|...|+.+..+||++++.+|..+++.|++
T Consensus 3 ~~~i~q~~~~~~~---~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 79 (172)
T 1t5i_A 3 LHGLQQYYVKLKD---NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD 79 (172)
T ss_dssp --CCEEEEEECCG---GGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCCeEEEEEECCh---HHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHC
Confidence 3466777777653 5577778888877778899999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecC-cHHHHHHHHHHhcCcchh
Q 007481 292 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN-DRSLLKAIAKRAGSKLKS 368 (602)
Q Consensus 292 g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~-d~~~l~~i~~~~~~~~~~ 368 (602)
|..+|||||+++++|+|+|++++||+||+|+|+..|+||+||+||.|+.|.+++|+++. +...++.+.+.++..+..
T Consensus 80 g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 157 (172)
T 1t5i_A 80 FQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISE 157 (172)
T ss_dssp TSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEE
T ss_pred CCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhh
Confidence 99999999999999999999999999999999999999999999999999999999876 567888898888776654
No 81
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.93 E-value=7.4e-25 Score=213.06 Aligned_cols=146 Identities=34% Similarity=0.469 Sum_probs=134.5
Q ss_pred hhhHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccc
Q 007481 227 EVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 306 (602)
Q Consensus 227 ~~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~G 306 (602)
...+...+..++....++++||||+++..++.++..|...|+.+..+||++++.+|..+++.|++|..+|||||+++++|
T Consensus 15 ~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 94 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARG 94 (212)
T ss_dssp TTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCS
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcC
Confidence 35677788888877778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcchhhhhh
Q 007481 307 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVA 372 (602)
Q Consensus 307 lDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~ 372 (602)
+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++.+...+..+.+..+..+.....+
T Consensus 95 idi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 160 (212)
T 3eaq_A 95 LDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPP 160 (212)
T ss_dssp SSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCC
T ss_pred CCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCC
Confidence 999999999999999999999999999999999999999999999999999999988777655443
No 82
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.93 E-value=5.9e-25 Score=205.14 Aligned_cols=154 Identities=27% Similarity=0.468 Sum_probs=133.9
Q ss_pred CceeeeeeechhhhhhHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCC
Q 007481 214 TLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 293 (602)
Q Consensus 214 ~l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~ 293 (602)
.+.+.++.+.. ...+...|..++.....+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|.
T Consensus 3 ~i~~~~~~~~~--~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 3 GIKQFYVNVEE--EEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp -CEEEEEEEES--GGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CcEEEEEECCc--chhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 45666666643 2337777888887777889999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcchhh
Q 007481 294 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSR 369 (602)
Q Consensus 294 ~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~~~~ 369 (602)
.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|..|.+++|+++.+...+..+.+.++..+...
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEEL 156 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEEC
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999988877666543
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.92 E-value=1.3e-24 Score=206.79 Aligned_cols=150 Identities=35% Similarity=0.549 Sum_probs=121.4
Q ss_pred CCCCCceeeeeeechhhhhhHHHHHHHHhhhc-CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHH
Q 007481 210 KRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT-FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALEL 288 (602)
Q Consensus 210 ~~~~~l~~~~~~~~~~~~~~k~~~l~~l~~~~-~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~ 288 (602)
..+.++.+.++.+.. ..+...|..++... .+.++||||+++..++.++..|...|+.+..+||++++.+|..+++.
T Consensus 15 ~~~~~i~q~~~~v~~---~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~ 91 (185)
T 2jgn_A 15 STSENITQKVVWVEE---SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQ 91 (185)
T ss_dssp -CCTTEEEEEEECCG---GGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHH
T ss_pred CCCCCceEEEEEeCc---HHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHH
Confidence 345678888887753 45666777777655 46899999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHh
Q 007481 289 FRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362 (602)
Q Consensus 289 F~~g~~~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~ 362 (602)
|++|+++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++.+...++.+.+.+
T Consensus 92 f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l 165 (185)
T 2jgn_A 92 FRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLL 165 (185)
T ss_dssp HHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHH
T ss_pred HHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988888877654
No 84
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.92 E-value=4e-25 Score=214.54 Aligned_cols=170 Identities=21% Similarity=0.175 Sum_probs=123.6
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHH-HHHHHHHH
Q 007481 14 EALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ-VHSMIEKI 92 (602)
Q Consensus 14 ~~~g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q-~~~~~~~l 92 (602)
...+...|+|+|.++++.++.++++++.+|||+|||++|+++++..+........+.++||+||+++|+.| +.+.+..+
T Consensus 27 ~~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 27 SPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CCSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred CccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 34456689999999999999999999999999999999999988776543211234579999999999999 88888888
Q ss_pred hhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCC-----CCCCCcceEEEeCccccccCCcHHHH-H
Q 007481 93 AQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS-----VDLDDLAVLILDEADRLLELGFSAEI-H 166 (602)
Q Consensus 93 ~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~-----~~l~~l~llVlDEah~l~~~gf~~~i-~ 166 (602)
... ++.+..++|+.........+...++|+|+||+.|...+..... +.+..+++|||||||++.+.++...+ .
T Consensus 107 ~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~ 185 (216)
T 3b6e_A 107 LKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMR 185 (216)
T ss_dssp HTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHH
T ss_pred hcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHH
Confidence 664 6788888887655444444455689999999999999886432 55788999999999999877654443 3
Q ss_pred HHHHhC-------------CCCcceeeeecc
Q 007481 167 ELVRLC-------------PKRRQTMLFSAT 184 (602)
Q Consensus 167 ~i~~~~-------------~~~~q~il~SAT 184 (602)
.++... .+.++++++|||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 186 HYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHhcccccccccccCCCCcceEEEeecC
Confidence 333221 156899999998
No 85
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.91 E-value=6.8e-24 Score=216.38 Aligned_cols=155 Identities=32% Similarity=0.456 Sum_probs=135.8
Q ss_pred ceeeeeeechhhhhhHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCc
Q 007481 215 LTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 294 (602)
Q Consensus 215 l~~~~~~~~~~~~~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~ 294 (602)
+.+.++.+. ...+...+..++....++++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|..
T Consensus 3 v~~~~i~~~---~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~ 79 (300)
T 3i32_A 3 YEEEAVPAP---VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEV 79 (300)
T ss_dssp SEEEEEECC---SSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSC
T ss_pred eEEEEEECC---HHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCc
Confidence 345555543 35677778888877778999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCccccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcchhhhhh
Q 007481 295 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVA 372 (602)
Q Consensus 295 ~iLVaT~~~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~ 372 (602)
+|||||+++++|+|+|++++||+||+|++...|+||+||+||+|+.|.|++|+++.+...++.+.+.++..+.....+
T Consensus 80 ~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~ 157 (300)
T 3i32_A 80 RVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPP 157 (300)
T ss_dssp CEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCC
T ss_pred eEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998877654443
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.91 E-value=3.8e-23 Score=228.62 Aligned_cols=303 Identities=17% Similarity=0.195 Sum_probs=167.5
Q ss_pred CCCCCCcHHHHHHHHH----HhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHH
Q 007481 16 LGYSKPTPIQAACIPL----ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 91 (602)
Q Consensus 16 ~g~~~pt~~Q~~~i~~----~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~ 91 (602)
.|| .|+|+|.+++.. +..|+++++.||||+|||++|++|++.. +.+++|++||++|+.|+.+.+..
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~---------~~~~~~~~~t~~l~~q~~~~~~~ 73 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL---------KKKVLIFTRTHSQLDSIYKNAKL 73 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH---------TCEEEEEESCHHHHHHHHHHHGG
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC---------CCcEEEEcCCHHHHHHHHHHHHh
Confidence 577 799999998654 4578999999999999999999998754 34799999999999999988776
Q ss_pred HhhcCCceEEEEECCCCH--------------------------------HHHHH---------------HHcCCCcEEE
Q 007481 92 IAQFTDIRCCLVVGGLST--------------------------------KMQET---------------ALRSMPDIVV 124 (602)
Q Consensus 92 l~~~~~i~v~~~~g~~~~--------------------------------~~~~~---------------~l~~~~~IvI 124 (602)
+ ++++..+.|.... ...|. .....++|||
T Consensus 74 l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV 149 (540)
T 2vl7_A 74 L----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIA 149 (540)
T ss_dssp G----TCCEEEC---------------------------------------------------------CTTGGGCSEEE
T ss_pred c----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEE
Confidence 4 4555554442210 00010 1134579999
Q ss_pred ECcHHHHHHHHccC-C-----CCCCCcceEEEeCccccccCC-----------cHH------------------------
Q 007481 125 ATPGRMIDHLRNSM-S-----VDLDDLAVLILDEADRLLELG-----------FSA------------------------ 163 (602)
Q Consensus 125 ~Tp~~L~~~l~~~~-~-----~~l~~l~llVlDEah~l~~~g-----------f~~------------------------ 163 (602)
+|+..|++...... . -.+....++||||||++.+.. +..
T Consensus 150 ~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~ 229 (540)
T 2vl7_A 150 MTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDYIN 229 (540)
T ss_dssp EETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred EChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 99999998554311 1 024567899999999974310 000
Q ss_pred ------------------------------HHHHHHHh------------------------------------CCCC--
Q 007481 164 ------------------------------EIHELVRL------------------------------------CPKR-- 175 (602)
Q Consensus 164 ------------------------------~i~~i~~~------------------------------------~~~~-- 175 (602)
.+..++.. .|..
T Consensus 230 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~~~ 309 (540)
T 2vl7_A 230 LLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSDVN 309 (540)
T ss_dssp HHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSCHH
T ss_pred HHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHHHH
Confidence 00000000 0000
Q ss_pred ------cc----eeeeeccCChhHHHHHHHhcCCCeEEecCCCCCCCCCceeeeee--ec-hh--hh---hhHHHHHHHH
Q 007481 176 ------RQ----TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVR--IR-RM--RE---VNQEAVLLSL 237 (602)
Q Consensus 176 ------~q----~il~SAT~~~~~~~l~~~~l~~p~~~~~~~~~~~~~~l~~~~~~--~~-~~--~~---~~k~~~l~~l 237 (602)
.. +|++|||+++.. .+...+...+... -+..+.+.. +. ++ .. ......+..+
T Consensus 310 ~~l~~~~~~~~~~IltSATL~p~~------~~~~~f~~~~~~~----~g~~~~~~~~~l~s~f~~r~~~~~~~~~~l~~~ 379 (540)
T 2vl7_A 310 QLIEDALNVKTFKVLMSGTLPESL------TLTNSYKIVVNES----YGRGEYYYCPNVTSELRKRNSNIPIYSILLKRI 379 (540)
T ss_dssp HHHHHHTCCSSCEEEEESSCCTTC------CCTTEEEEECCCC-----CCCEEEECTTCCCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCccCCeEEEcccCCCCc------ccchhcCCchhhe----ecCCcceeccccCCCcccccCHHHHHHHHHHHH
Confidence 11 377777776510 0000000011000 011111100 10 00 00 1112223334
Q ss_pred hhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEE--EcCccccccCcCC----
Q 007481 238 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI--ATDVAARGLDIIG---- 311 (602)
Q Consensus 238 ~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLV--aT~~~~~GlDip~---- 311 (602)
+. ..++++|||++|...++.+...|.. .. ...+|.. .+|.++++.|+.+. .||+ +|+.+++|||+|+
T Consensus 380 ~~-~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~ 452 (540)
T 2vl7_A 380 YE-NSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENL 452 (540)
T ss_dssp HH-TCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------C
T ss_pred HH-hCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCccc
Confidence 43 3467999999999999999988864 23 3555554 46889999999865 5776 8899999999997
Q ss_pred ccEEEEcCCCCCh------------------------------hhHHHHhhhcccCCCcceEEEEEec
Q 007481 312 VQTVINYACPRDL------------------------------TSYVHRVGRTARAGREGYAVTFVTD 349 (602)
Q Consensus 312 v~~VI~~d~p~s~------------------------------~~yiQriGRa~R~g~~g~~i~l~~~ 349 (602)
+++||++++|... ....|.+||+.|...+--++++++.
T Consensus 453 ~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 453 FESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp EEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred ccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 8999999999521 2345999999996444334444544
No 87
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.83 E-value=1.9e-25 Score=209.54 Aligned_cols=144 Identities=35% Similarity=0.589 Sum_probs=131.0
Q ss_pred hhHHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcccccc
Q 007481 228 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 307 (602)
Q Consensus 228 ~~k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~Gl 307 (602)
..+...|..++....++++||||+++..++.++..|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+
T Consensus 15 ~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gi 94 (170)
T 2yjt_D 15 EHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGI 94 (170)
Confidence 34556666777666678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCccEEEEcCCCCChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhcCcchhhhh
Q 007481 308 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIV 371 (602)
Q Consensus 308 Dip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~ 371 (602)
|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++.+...+..+.+.++..+....+
T Consensus 95 d~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (170)
T 2yjt_D 95 DIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVI 158 (170)
Confidence 9999999999999999999999999999999999999999999999998888877666654443
No 88
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.88 E-value=4.5e-21 Score=212.75 Aligned_cols=309 Identities=16% Similarity=0.120 Sum_probs=196.5
Q ss_pred CCCCCcHHHHHHHHH----HhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHH
Q 007481 17 GYSKPTPIQAACIPL----ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 92 (602)
Q Consensus 17 g~~~pt~~Q~~~i~~----~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l 92 (602)
|| .|+|+|.+.+.. +..|+++++.||||+|||++|++|++.. +.+++|++||++|+.|+.+.+..+
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~---------~~~v~i~~pt~~l~~q~~~~~~~l 70 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV---------KPKVLFVVRTHNEFYPIYRDLTKI 70 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH---------CSEEEEEESSGGGHHHHHHHHTTC
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC---------CCeEEEEcCCHHHHHHHHHHHHHH
Confidence 45 699999997764 4568999999999999999999999872 347999999999999999999988
Q ss_pred hhcCCceEEEEECCCCH---------------------------------HHHH------------------HHHcCCCc
Q 007481 93 AQFTDIRCCLVVGGLST---------------------------------KMQE------------------TALRSMPD 121 (602)
Q Consensus 93 ~~~~~i~v~~~~g~~~~---------------------------------~~~~------------------~~l~~~~~ 121 (602)
....++++..+.|..+. .... ......++
T Consensus 71 ~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~ad 150 (551)
T 3crv_A 71 REKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKAD 150 (551)
T ss_dssp CCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCS
T ss_pred hhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCC
Confidence 77778888887773211 1111 22345689
Q ss_pred EEEECcHHHHHHHHccCCCCC-CCcceEEEeCccccccCC----------------------------------------
Q 007481 122 IVVATPGRMIDHLRNSMSVDL-DDLAVLILDEADRLLELG---------------------------------------- 160 (602)
Q Consensus 122 IvI~Tp~~L~~~l~~~~~~~l-~~l~llVlDEah~l~~~g---------------------------------------- 160 (602)
|||+||..|++...... +.+ ....++||||||++.+ .
T Consensus 151 IVV~~~~~l~~~~~~~~-~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~ 228 (551)
T 3crv_A 151 VIALTYPYFFIDRYREF-IDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVV 228 (551)
T ss_dssp EEEEETHHHHCHHHHTT-SCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSC
T ss_pred EEEeCchHhcCHHHHHh-cCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999865432 322 4667999999999765 1
Q ss_pred ---------------cHHHHH----------------------------HHHH---------------------------
Q 007481 161 ---------------FSAEIH----------------------------ELVR--------------------------- 170 (602)
Q Consensus 161 ---------------f~~~i~----------------------------~i~~--------------------------- 170 (602)
+...+. .++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l 308 (551)
T 3crv_A 229 LPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYL 308 (551)
T ss_dssp CSCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHH
T ss_pred hccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHH
Confidence 000000 0000
Q ss_pred -hCCCC-cceeeeeccCChhHHHHHHH-hcCCCeE-----EecCCCCCCCCCceeeeeeech-----hh---hh---hHH
Q 007481 171 -LCPKR-RQTMLFSATLTEDVDELIKL-SLTKPLR-----LSADPSAKRPSTLTEEVVRIRR-----MR---EV---NQE 231 (602)
Q Consensus 171 -~~~~~-~q~il~SAT~~~~~~~l~~~-~l~~p~~-----~~~~~~~~~~~~l~~~~~~~~~-----~~---~~---~k~ 231 (602)
.+... ..+|++|||+.+ ...+... .+..+.. +.+.... . .+..+.+.. .. .. .-.
T Consensus 309 ~~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf--~---~~~~l~v~~~~~~~~~~r~~~~~~~l~ 382 (551)
T 3crv_A 309 NLLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV--S---GSYECYIGVDVTSKYDMRSDNMWKRYA 382 (551)
T ss_dssp GGGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC--S---CEEEEEEECSCCCCTTTCCHHHHHHHH
T ss_pred HHHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC--C---CceEEEEeCCCCCccccCCHHHHHHHH
Confidence 01122 678999999986 3333333 2221332 1111111 1 111122111 00 11 111
Q ss_pred HHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEc--CccccccCc
Q 007481 232 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT--DVAARGLDI 309 (602)
Q Consensus 232 ~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT--~~~~~GlDi 309 (602)
..+..++ ...++++|||++|...++.+... .+..+..-..+++. .++++.|+.+.-.||++| ..+.+|||+
T Consensus 383 ~~i~~l~-~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~ 455 (551)
T 3crv_A 383 DYLLKIY-FQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIEL 455 (551)
T ss_dssp HHHHHHH-HHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCC
T ss_pred HHHHHHH-HhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccc
Confidence 2233333 33467999999999999998863 34444433334553 557788854444799998 699999999
Q ss_pred C---C--ccEEEEcCCCCC--------------------hh----------hHHHHhhhcccCCCcceEEEEEecC
Q 007481 310 I---G--VQTVINYACPRD--------------------LT----------SYVHRVGRTARAGREGYAVTFVTDN 350 (602)
Q Consensus 310 p---~--v~~VI~~d~p~s--------------------~~----------~yiQriGRa~R~g~~g~~i~l~~~~ 350 (602)
| + +.+||+..+|.. .- ...|.+||+-|...+--++++++..
T Consensus 456 ~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 456 RNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp EETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred cccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 9 3 788998877741 11 1238899999965444445555543
No 89
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.87 E-value=4e-22 Score=196.91 Aligned_cols=172 Identities=17% Similarity=0.243 Sum_probs=129.6
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhc-
Q 007481 17 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF- 95 (602)
Q Consensus 17 g~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~- 95 (602)
....++++|.++++.+..|+++++.||||||||+++.++++..+..... ...+++++++|+++|+.|+++.+......
T Consensus 58 ~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~-~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 58 ELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR-AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC-GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred hcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC-CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 3445799999999999999999999999999999998998887765443 23458999999999999998887654332
Q ss_pred CCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCcccc-ccCCcH-HHHHHHHHhCC
Q 007481 96 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL-LELGFS-AEIHELVRLCP 173 (602)
Q Consensus 96 ~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l-~~~gf~-~~i~~i~~~~~ 173 (602)
.+..++....... ......++|+|+||++|++++.. .+.++++|||||||.+ ++.+|. ..+..++...+
T Consensus 137 ~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~ 207 (235)
T 3llm_A 137 PGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP 207 (235)
T ss_dssp TTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred cCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC
Confidence 2333333222110 00124578999999999999976 3788999999999986 677776 46666666654
Q ss_pred CCcceeeeeccCChhHHHHHHHhcCCCe
Q 007481 174 KRRQTMLFSATLTEDVDELIKLSLTKPL 201 (602)
Q Consensus 174 ~~~q~il~SAT~~~~~~~l~~~~l~~p~ 201 (602)
..|+++||||++.+. +...+...|+
T Consensus 208 -~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 208 -EVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp -TSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred -CCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 689999999999776 5555555554
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.87 E-value=2.1e-22 Score=204.49 Aligned_cols=156 Identities=17% Similarity=0.143 Sum_probs=125.8
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCce
Q 007481 20 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 99 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~ 99 (602)
.|+|+|.++++.++.+++.++++|||+|||+++++++...+... ..++|||+||++|+.||++.+..+....+..
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-----~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~ 187 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-----EGKILIIVPTTALTTQMADDFVDYRLFSHAM 187 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC-----SSEEEEECSSHHHHHHHHHHHHHHTSCCGGG
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC-----CCeEEEEECCHHHHHHHHHHHHHhcccccce
Confidence 79999999999999999999999999999999988877665432 2379999999999999999999987766777
Q ss_pred EEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCCCccee
Q 007481 100 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179 (602)
Q Consensus 100 v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~i 179 (602)
+..++++..... ......+|+|+||+.+.... ...+..+++|||||||++.+ ..+..++..+....+++
T Consensus 188 ~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~----~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l 256 (282)
T 1rif_A 188 IKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP----KEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKF 256 (282)
T ss_dssp EEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC----GGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEE
T ss_pred EEEEeCCCcchh---hhccCCcEEEEchHHHHhhH----HHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEE
Confidence 888888764322 22356899999999875532 23456789999999999874 36667777777789999
Q ss_pred eeeccCChhHHH
Q 007481 180 LFSATLTEDVDE 191 (602)
Q Consensus 180 l~SAT~~~~~~~ 191 (602)
++||||++....
T Consensus 257 ~lSATp~~~~~~ 268 (282)
T 1rif_A 257 GLSGSLRDGKAN 268 (282)
T ss_dssp EECSSCCTTSTT
T ss_pred EEeCCCCCcchH
Confidence 999999865433
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.81 E-value=1.8e-19 Score=178.11 Aligned_cols=138 Identities=20% Similarity=0.189 Sum_probs=110.4
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCce
Q 007481 20 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 99 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~ 99 (602)
.|+|+|.++++.++.++++++++|||+|||.+++.++... +.++||++|+++|+.||++.+..| ++.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---------~~~~liv~P~~~L~~q~~~~~~~~----~~~ 159 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------STPTLIVVPTLALAEQWKERLGIF----GEE 159 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---------CSCEEEEESSHHHHHHHHHHHGGG----CGG
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHHHHHHHhC----CCC
Confidence 7899999999999999999999999999999987766542 236999999999999999988873 667
Q ss_pred -EEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcce
Q 007481 100 -CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 178 (602)
Q Consensus 100 -v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~ 178 (602)
+..+.|+.. ...+|+|+||+.+...+... ...+++|||||||++.+..|.. ++..++ ..++
T Consensus 160 ~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~----~~~~~llIiDEaH~l~~~~~~~----i~~~~~-~~~~ 221 (237)
T 2fz4_A 160 YVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYVQ----IAQMSI-APFR 221 (237)
T ss_dssp GEEEESSSCB---------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEECSSCCCTTTHHH----HHHTCC-CSEE
T ss_pred eEEEEeCCCC---------CcCCEEEEeHHHHHhhHHHh----cccCCEEEEECCccCCChHHHH----HHHhcc-CCEE
Confidence 777777643 35799999999988766532 2458899999999998876543 444454 5788
Q ss_pred eeeeccCChh
Q 007481 179 MLFSATLTED 188 (602)
Q Consensus 179 il~SAT~~~~ 188 (602)
+++||||+..
T Consensus 222 l~LSATp~r~ 231 (237)
T 2fz4_A 222 LGLTATFERE 231 (237)
T ss_dssp EEEEESCC--
T ss_pred EEEecCCCCC
Confidence 9999999754
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.80 E-value=5.8e-18 Score=189.53 Aligned_cols=317 Identities=18% Similarity=0.163 Sum_probs=190.3
Q ss_pred CCcHHHHHHHH----HHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhc
Q 007481 20 KPTPIQAACIP----LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 95 (602)
Q Consensus 20 ~pt~~Q~~~i~----~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~ 95 (602)
+|+|.|.+.+. .+..|+++++.||||+|||++|++|++..+... +.+++|++||++|+.|+.+.+..+...
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~-----~~kvli~t~T~~l~~Qi~~el~~l~~~ 77 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER-----KLKVLYLVRTNSQEEQVIKELRSLSST 77 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH-----TCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc-----CCeEEEECCCHHHHHHHHHHHHHHhhc
Confidence 58999999885 445799999999999999999999999887642 347999999999999999999998877
Q ss_pred CCceEEEEECCCCHHH--------------------H---------------------H---------------------
Q 007481 96 TDIRCCLVVGGLSTKM--------------------Q---------------------E--------------------- 113 (602)
Q Consensus 96 ~~i~v~~~~g~~~~~~--------------------~---------------------~--------------------- 113 (602)
.++++..+.|+.+.-. . +
T Consensus 78 ~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~l~~~ 157 (620)
T 4a15_A 78 MKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFYDY 157 (620)
T ss_dssp SCCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHHHHHH
T ss_pred cCeEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHHHHHHH
Confidence 7777777666421000 0 0
Q ss_pred ------------HHHcCCCcEEEECcHHHHHHHHccC---CCC-CCCcceEEEeCcccccc-------------------
Q 007481 114 ------------TALRSMPDIVVATPGRMIDHLRNSM---SVD-LDDLAVLILDEADRLLE------------------- 158 (602)
Q Consensus 114 ------------~~l~~~~~IvI~Tp~~L~~~l~~~~---~~~-l~~l~llVlDEah~l~~------------------- 158 (602)
......+||||+.+..|++..-... .+. ...-.++||||||++.+
T Consensus 158 ~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l~~~~ 237 (620)
T 4a15_A 158 GERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNRAD 237 (620)
T ss_dssp HHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHHHHHH
T ss_pred hhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHHHHHHH
Confidence 0012347999999988766542210 011 12345899999998432
Q ss_pred -------CCc----------HH---------------------------------------HHH-------HHHH-----
Q 007481 159 -------LGF----------SA---------------------------------------EIH-------ELVR----- 170 (602)
Q Consensus 159 -------~gf----------~~---------------------------------------~i~-------~i~~----- 170 (602)
..+ .. .+. .+..
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 317 (620)
T 4a15_A 238 REAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVENE 317 (620)
T ss_dssp HHHHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHhh
Confidence 000 00 000 0000
Q ss_pred --------------------h---CC------------------------------CCcceeeeeccCChhHHHHH-HHh
Q 007481 171 --------------------L---CP------------------------------KRRQTMLFSATLTEDVDELI-KLS 196 (602)
Q Consensus 171 --------------------~---~~------------------------------~~~q~il~SAT~~~~~~~l~-~~~ 196 (602)
. .. ....+|++|||+.+ ...+. .++
T Consensus 318 ~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p-~~~~~~~lG 396 (620)
T 4a15_A 318 KEKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP-FDFYSDITG 396 (620)
T ss_dssp HHHTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS-HHHHHHHHC
T ss_pred ccccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc-HHHHHHHhC
Confidence 0 00 01235899999986 33333 344
Q ss_pred cCCCeEEecCCCCCCCCCceeeeee-ech---hhhhh----HHHHHHHHhhhcCCCeEEEEeCcHHHHHHHHHHHhhcCC
Q 007481 197 LTKPLRLSADPSAKRPSTLTEEVVR-IRR---MREVN----QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAAL 268 (602)
Q Consensus 197 l~~p~~~~~~~~~~~~~~l~~~~~~-~~~---~~~~~----k~~~l~~l~~~~~~~kvIIF~~s~~~a~~l~~~L~~~g~ 268 (602)
+. +..+.+.+... .....-.+.. +.. ..... -...+..++.. .+++++||++|....+.+...|.. +
T Consensus 397 l~-~~~~~~~spf~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~-~~g~~lvlF~Sy~~l~~v~~~l~~--~ 471 (620)
T 4a15_A 397 FE-IPFKKIGEIFP-PENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILK-VKKNTIVYFPSYSLMDRVENRVSF--E 471 (620)
T ss_dssp CC-CCEEECCCCSC-GGGEEEEEECCC-------CHHHHHHHHHHHHHHHHH-HCSCEEEEESCHHHHHHHTSSCCS--C
T ss_pred CC-ceeeecCCCCC-HHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHHHh--c
Confidence 44 44444433322 1111111110 100 00111 11223334433 367899999999999999888872 2
Q ss_pred ceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC--ccccccCcCC--ccEEEEcCCCCCh--------------------
Q 007481 269 KAAELHGNLTQAQRLEALELFRKQHVDFLIATD--VAARGLDIIG--VQTVINYACPRDL-------------------- 324 (602)
Q Consensus 269 ~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~--~~~~GlDip~--v~~VI~~d~p~s~-------------------- 324 (602)
... ...+++..++..+++.|+ +.-.||+++. .+++|||+|+ +.+||+..+|...
T Consensus 472 ~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~ 549 (620)
T 4a15_A 472 HMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGW 549 (620)
T ss_dssp CEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHH
T ss_pred chh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCc
Confidence 222 555666678999999999 8888999974 8999999987 7889998888521
Q ss_pred ---------hhHHHHhhhcccCCCcceEEEEEec
Q 007481 325 ---------TSYVHRVGRTARAGREGYAVTFVTD 349 (602)
Q Consensus 325 ---------~~yiQriGRa~R~g~~g~~i~l~~~ 349 (602)
....|.+||.-|.-.+--++++++.
T Consensus 550 ~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 550 EYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp HHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred hHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 1125999999996544334444444
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.79 E-value=9.1e-19 Score=176.22 Aligned_cols=126 Identities=12% Similarity=0.200 Sum_probs=98.1
Q ss_pred hhHHHHHHHHhhhc--CCCeEEEEeCcHHHHHHHHHHHhhc-CCceeeccCCCCHHHHHHHHHHHhcC-Cce-EEEEcCc
Q 007481 228 VNQEAVLLSLCSKT--FTSKVIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQ-HVD-FLIATDV 302 (602)
Q Consensus 228 ~~k~~~l~~l~~~~--~~~kvIIF~~s~~~a~~l~~~L~~~-g~~~~~lhg~~~~~eR~~il~~F~~g-~~~-iLVaT~~ 302 (602)
..+...+..++... .+.++||||++...++.+...|... |+.+..+||++++.+|..+++.|++| .+. +|++|++
T Consensus 95 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~ 174 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 174 (271)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhh
Confidence 45566666666543 5789999999999999999999884 99999999999999999999999998 777 7899999
Q ss_pred cccccCcCCccEEEEcCCCCChhhHHHHhhhcccCCCcce--EEEEEecCcHH
Q 007481 303 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGY--AVTFVTDNDRS 353 (602)
Q Consensus 303 ~~~GlDip~v~~VI~~d~p~s~~~yiQriGRa~R~g~~g~--~i~l~~~~d~~ 353 (602)
+++|||++.+++||+||+|||+..|+||+||++|.|+.+. ++.|+..++.+
T Consensus 175 ~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiE 227 (271)
T 1z5z_A 175 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLE 227 (271)
T ss_dssp TCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHH
T ss_pred hcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHH
Confidence 9999999999999999999999999999999999997654 56778877543
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.90 E-value=2.5e-09 Score=119.45 Aligned_cols=146 Identities=21% Similarity=0.260 Sum_probs=91.8
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCchHH--HHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCce
Q 007481 22 TPIQAACIPLALTGRDICGSAITGSGKT--AAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 99 (602)
Q Consensus 22 t~~Q~~~i~~~l~g~dvii~a~TGSGKT--~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~ 99 (602)
++.|..+++.++.++.+++.|++||||| ++++++.+..+... .+.++++++||..+|.++.+.+..+....++.
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~----~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~ 226 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG----ERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSS----CCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhc----CCCeEEEEeCChhHHHHHHHHHHHHHhcCCCC
Confidence 7899999999999999999999999999 55667766654211 34579999999999999988887765554432
Q ss_pred EEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCCCccee
Q 007481 100 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 179 (602)
Q Consensus 100 v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~i 179 (602)
.... ..... . ...-..++-.+|+.. . +..... ....+++||||||++ ++ ...+..++..++...|+|
T Consensus 227 ~~~~-~~~~~--~---~~Tih~ll~~~~~~~-~-~~~~~~-~~l~~d~lIIDEAsm-l~---~~~~~~Ll~~l~~~~~li 293 (608)
T 1w36_D 227 DEQK-KRIPE--D---ASTLHRLLGAQPGSQ-R-LRHHAG-NPLHLDVLVVDEASM-ID---LPMMSRLIDALPDHARVI 293 (608)
T ss_dssp SCCC-CSCSC--C---CBTTTSCC-------------CTT-SCCSCSEEEECSGGG-CB---HHHHHHHHHTCCTTCEEE
T ss_pred HHHH-hccch--h---hhhhHhhhccCCCch-H-HHhccC-CCCCCCEEEEechhh-CC---HHHHHHHHHhCCCCCEEE
Confidence 1110 00000 0 000011222233221 1 111111 123688999999994 44 456778888899889998
Q ss_pred eeecc
Q 007481 180 LFSAT 184 (602)
Q Consensus 180 l~SAT 184 (602)
++.=.
T Consensus 294 LvGD~ 298 (608)
T 1w36_D 294 FLGDR 298 (608)
T ss_dssp EEECT
T ss_pred EEcch
Confidence 87643
No 95
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.24 E-value=4.1e-06 Score=90.26 Aligned_cols=75 Identities=12% Similarity=0.194 Sum_probs=52.4
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHhcC-----CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHH
Q 007481 10 LRACEALGYSKPTPIQAACIPLALTG-----RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 84 (602)
Q Consensus 10 l~~l~~~g~~~pt~~Q~~~i~~~l~g-----~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q 84 (602)
..-..-+.|..|++-|.+++..++.. ..+++.|+.|||||.+ +..++..+..... ..+++++||...+..
T Consensus 15 ~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~~----~~il~~a~T~~Aa~~ 89 (459)
T 3upu_A 15 VPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTGE----TGIILAAPTHAAKKI 89 (459)
T ss_dssp ------CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTTC----CCEEEEESSHHHHHH
T ss_pred ccccCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcCC----ceEEEecCcHHHHHH
Confidence 33446788999999999999977642 3888999999999975 3455555554322 258999999988776
Q ss_pred HHHHH
Q 007481 85 VHSMI 89 (602)
Q Consensus 85 ~~~~~ 89 (602)
+.+.+
T Consensus 90 l~~~~ 94 (459)
T 3upu_A 90 LSKLS 94 (459)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 65443
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.16 E-value=0.00017 Score=80.99 Aligned_cols=67 Identities=15% Similarity=0.209 Sum_probs=53.1
Q ss_pred CCCcHHHHHHHHHHhcCCC-EEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHH
Q 007481 19 SKPTPIQAACIPLALTGRD-ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 91 (602)
Q Consensus 19 ~~pt~~Q~~~i~~~l~g~d-vii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~ 91 (602)
..+.+.|.+|+..++..++ .||.||+|||||.+. .-++..+... +.++|+++||..-+.++.+.+..
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti-~~~I~~l~~~-----~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTV-VEIILQAVKQ-----GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHH-HHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHH-HHHHHHHHhC-----CCeEEEEcCchHHHHHHHHHHHh
Confidence 3578999999999998765 569999999999874 4455555543 34699999999999998887764
No 97
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.15 E-value=6.1e-06 Score=91.20 Aligned_cols=121 Identities=17% Similarity=0.192 Sum_probs=79.1
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCce
Q 007481 20 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 99 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~ 99 (602)
.+++.|.+++..++.++.+++.|+.|+|||.+ +..++..+... +.++++++||...+..+.+.+. ..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~~-----g~~Vl~~ApT~~Aa~~L~e~~~-------~~ 255 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAESL-----GLEVGLCAPTGKAARRLGEVTG-------RT 255 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHHT-------SC
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHhc-----CCeEEEecCcHHHHHHhHhhhc-------cc
Confidence 47999999999999999999999999999975 34444444432 3469999999999877654331 11
Q ss_pred EEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHH----HHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCCC
Q 007481 100 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDH----LRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 175 (602)
Q Consensus 100 v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~----l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~ 175 (602)
.. |-.+++.. +.. .......+++||||||+.+. ...+..++..++..
T Consensus 256 a~------------------------Tih~ll~~~~~~~~~-~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~ 306 (574)
T 3e1s_A 256 AS------------------------TVHRLLGYGPQGFRH-NHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPG 306 (574)
T ss_dssp EE------------------------EHHHHTTEETTEESC-SSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTT
T ss_pred HH------------------------HHHHHHcCCcchhhh-hhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCC
Confidence 11 11111100 000 01123457899999999764 34566777777776
Q ss_pred cceeeee
Q 007481 176 RQTMLFS 182 (602)
Q Consensus 176 ~q~il~S 182 (602)
.+++++.
T Consensus 307 ~~lilvG 313 (574)
T 3e1s_A 307 ARVLLVG 313 (574)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 6666653
No 98
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.14 E-value=2e-05 Score=79.69 Aligned_cols=125 Identities=11% Similarity=0.071 Sum_probs=91.5
Q ss_pred hhhHHHHHHHHhh--hcCCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccc
Q 007481 227 EVNQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 304 (602)
Q Consensus 227 ~~~k~~~l~~l~~--~~~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~ 304 (602)
...|..+|..++. ...+.+||||++..++.+.+..+|...++.+..+.|.....+ .+ -.+..+.+.+.|..++
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AA----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hh----cccCCceEEEEECCCC
Confidence 3556666666654 335789999999999999999999999999999999855432 11 1234556666677777
Q ss_pred cccC-----cCCccEEEEcCCCCChhhH-HHHhhhcccCC----CcceEEEEEecCcHHHHH
Q 007481 305 RGLD-----IIGVQTVINYACPRDLTSY-VHRVGRTARAG----REGYAVTFVTDNDRSLLK 356 (602)
Q Consensus 305 ~GlD-----ip~v~~VI~~d~p~s~~~y-iQriGRa~R~g----~~g~~i~l~~~~d~~~l~ 356 (602)
-|+| +...++||.||..||+..- +|.+-|++|.| +.-.+|-|++.++.+...
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~ 243 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCR 243 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHH
Confidence 7776 6789999999999999986 99999988863 467888899988866543
No 99
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.10 E-value=1.6e-05 Score=89.00 Aligned_cols=70 Identities=17% Similarity=0.094 Sum_probs=55.5
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHH
Q 007481 18 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 92 (602)
Q Consensus 18 ~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l 92 (602)
+..+++.|.+++..++.+.-++|.||+|+|||.+. ..++..+... .+.++|+++||...+.++.+.+...
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~-~~~i~~l~~~----~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ----GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHH-HHHHHHHHTS----SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHH-HHHHHHHHHc----CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 35679999999999998888899999999999763 4455555532 2346999999999999988877653
No 100
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.02 E-value=0.00025 Score=79.57 Aligned_cols=72 Identities=17% Similarity=0.157 Sum_probs=54.8
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhh
Q 007481 19 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 94 (602)
Q Consensus 19 ~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~ 94 (602)
..+++-|.+++. ..+..++|.|+.|||||.+.+--+. .++.... .++.++|+|++|+..+.++.+.+..+..
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~-~l~~~~~-~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIA-WLMSVEN-CSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHH-HHHHTSC-CCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHH-HHHHhCC-CChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 578999999997 2367899999999999987543343 3443321 2345799999999999999999887643
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.00 E-value=4.1e-05 Score=87.73 Aligned_cols=69 Identities=17% Similarity=0.098 Sum_probs=55.1
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHH
Q 007481 18 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 91 (602)
Q Consensus 18 ~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~ 91 (602)
...+++.|.+++..++.+.-.+|.||+|+|||.+. ..++..+... .+.++|+++||...+.++.+.+..
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~~~----~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ----GNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHHTT----CSSCEEEEESSHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHHHc----CCCcEEEEcCcHHHHHHHHHHHHH
Confidence 34579999999999998888899999999999763 5555555542 234699999999999998887764
No 102
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=5e-05 Score=87.06 Aligned_cols=70 Identities=14% Similarity=0.159 Sum_probs=55.0
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHH
Q 007481 18 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 92 (602)
Q Consensus 18 ~~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l 92 (602)
+..+++.|.+++..++.+.-++|.||+|||||.+. ..++..+... .+.++|+++||...+.++.+.+...
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i-~~~i~~l~~~----~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTS-ATIVYHLSKI----HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHH-HHHHHHHHHH----HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHH-HHHHHHHHhC----CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 35678999999999998777899999999999764 4444444331 2336999999999999998888764
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.24 E-value=0.0035 Score=65.30 Aligned_cols=72 Identities=14% Similarity=0.104 Sum_probs=57.0
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhc
Q 007481 20 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 95 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~ 95 (602)
.|+|+|...+..+...+-+++..+-+.|||.++...++..+... ++..+++++|+..-|..+.+.+..+...
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~----~g~~v~~vA~t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN----KDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS----SSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC----CCCeEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 68999999998775556789999999999987666666555543 3457999999999998888888777654
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.04 E-value=0.0051 Score=68.16 Aligned_cols=73 Identities=14% Similarity=0.097 Sum_probs=57.8
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcC
Q 007481 20 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 96 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~ 96 (602)
.|+|+|...+..+-..+-+++..+-|+|||.+....++..+... ++..+++++|+...|..+.+.+..+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~----~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN----KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS----SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC----CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 58999999998775567789999999999987655555555543 24479999999999999888888776554
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.03 E-value=0.0031 Score=58.12 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHh---------cCCCEEEEcCCCchHHHH
Q 007481 22 TPIQAACIPLAL---------TGRDICGSAITGSGKTAA 51 (602)
Q Consensus 22 t~~Q~~~i~~~l---------~g~dvii~a~TGSGKT~a 51 (602)
.+.|.+++..+. .|+.+++.||+|+|||..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHH
Confidence 567888887664 367899999999999975
No 106
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.64 E-value=0.0049 Score=65.11 Aligned_cols=105 Identities=21% Similarity=0.175 Sum_probs=60.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHH
Q 007481 37 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 116 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l 116 (602)
=.++.|+.|+|||..+ .-. +. . ...+||+||++++..|.+.+... +.
T Consensus 163 v~~I~G~aGsGKTt~I-~~~---~~--~-----~~~lVlTpT~~aa~~l~~kl~~~----~~------------------ 209 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEI-LSR---VN--F-----EEDLILVPGRQAAEMIRRRANAS----GI------------------ 209 (446)
T ss_dssp EEEEEECTTSCHHHHH-HHH---CC--T-----TTCEEEESCHHHHHHHHHHHTTT----SC------------------
T ss_pred EEEEEcCCCCCHHHHH-HHH---hc--c-----CCeEEEeCCHHHHHHHHHHhhhc----Cc------------------
Confidence 3568999999999753 222 21 1 13699999999998887666421 10
Q ss_pred cCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeee
Q 007481 117 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182 (602)
Q Consensus 117 ~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~S 182 (602)
.....+-|.|.+.++- +......-..++||||||-.+ +.+ .+..++...+. .+++++.
T Consensus 210 ~~~~~~~V~T~dsfL~---~~~~~~~~~~d~liiDE~sm~-~~~---~l~~l~~~~~~-~~vilvG 267 (446)
T 3vkw_A 210 IVATKDNVRTVDSFLM---NYGKGARCQFKRLFIDEGLML-HTG---CVNFLVEMSLC-DIAYVYG 267 (446)
T ss_dssp CCCCTTTEEEHHHHHH---TTTSSCCCCCSEEEEETGGGS-CHH---HHHHHHHHTTC-SEEEEEE
T ss_pred cccccceEEEeHHhhc---CCCCCCCCcCCEEEEeCcccC-CHH---HHHHHHHhCCC-CEEEEec
Confidence 0112334677666543 322222234789999999854 333 23334444443 4444443
No 107
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.47 E-value=0.014 Score=59.11 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=17.6
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 36 RDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
..+++.||+|+|||..+ -.+...+
T Consensus 38 ~~lll~G~~GtGKT~la-~~i~~~~ 61 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLL-QAAGNEA 61 (324)
T ss_dssp SSEEEECSSSSSHHHHH-HHHHHHH
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHH
Confidence 58999999999999753 3333443
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.44 E-value=0.0091 Score=55.51 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=26.8
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 79 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr 79 (602)
|+-.++.||+|+|||..+ +-++.++... +.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~l-l~~~~~~~~~-----g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTEL-LSFVEIYKLG-----KKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHH-HHHHHHHHHT-----TCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHH-HHHHHHHHHC-----CCeEEEEeecc
Confidence 455779999999999864 4555554432 23688888873
No 109
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.027 Score=57.06 Aligned_cols=27 Identities=11% Similarity=0.046 Sum_probs=20.4
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHc
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLY 62 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~ 62 (602)
+.++++.||+|+|||++. -.++..+..
T Consensus 45 ~~~lli~GpPGTGKT~~v-~~v~~~L~~ 71 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLV-NDVMDELIT 71 (318)
T ss_dssp CCEEEEECCCSHHHHHHH-HHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHH
Confidence 468999999999999764 555555543
No 110
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.28 E-value=0.0083 Score=57.61 Aligned_cols=91 Identities=22% Similarity=0.296 Sum_probs=52.8
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 114 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~ 114 (602)
|.-+++.|++|+|||++. +-++.++... +.+++++.|...- +....++...++.
T Consensus 12 G~i~litG~mGsGKTT~l-l~~~~r~~~~-----g~kVli~~~~~d~-----r~~~~i~srlG~~--------------- 65 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAEL-IRRLHRLEYA-----DVKYLVFKPKIDT-----RSIRNIQSRTGTS--------------- 65 (223)
T ss_dssp CEEEEEECSTTSCHHHHH-HHHHHHHHHT-----TCCEEEEEECCCG-----GGCSSCCCCCCCS---------------
T ss_pred cEEEEEECCCCCcHHHHH-HHHHHHHHhc-----CCEEEEEEeccCc-----hHHHHHHHhcCCC---------------
Confidence 455678999999999864 6666665543 2358888765421 0000111111110
Q ss_pred HHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccc
Q 007481 115 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 157 (602)
Q Consensus 115 ~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~ 157 (602)
...+.+.+...+++.+... ..-..+++|||||++.+.
T Consensus 66 ----~~~~~~~~~~~i~~~i~~~--~~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 66 ----LPSVEVESAPEILNYIMSN--SFNDETKVIGIDEVQFFD 102 (223)
T ss_dssp ----SCCEEESSTHHHHHHHHST--TSCTTCCEEEECSGGGSC
T ss_pred ----ccccccCCHHHHHHHHHHH--hhCCCCCEEEEecCccCc
Confidence 1133456677777777652 223457899999999754
No 111
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.26 E-value=0.032 Score=52.12 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=18.1
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHHH
Q 007481 36 RDICGSAITGSGKTAAFALPTLERLL 61 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l~ 61 (602)
.++++.||+|+|||..+ ..+...+.
T Consensus 55 ~~~~l~G~~GtGKT~la-~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL-AAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHH-HHHHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 68999999999999753 33444443
No 112
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.24 E-value=0.0016 Score=58.54 Aligned_cols=18 Identities=28% Similarity=0.277 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCchHHHH
Q 007481 34 TGRDICGSAITGSGKTAA 51 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a 51 (602)
.|..+++.+|+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 578899999999999974
No 113
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.05 E-value=0.011 Score=55.31 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=27.4
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 79 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr 79 (602)
|+=.++.+|+|||||.+. +-++.++... +.+|+++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~l-l~~a~r~~~~-----g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEEL-IRRIRRAKIA-----KQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHH-HHHHHHHHHT-----TCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHH-HHHHHHHHHC-----CCEEEEEEecc
Confidence 445668999999999764 5666665543 33689998873
No 114
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.03 E-value=0.0088 Score=72.01 Aligned_cols=109 Identities=23% Similarity=0.184 Sum_probs=70.9
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCc
Q 007481 19 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI 98 (602)
Q Consensus 19 ~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i 98 (602)
..+|+-|.++|..- +++++|.|..|||||.+.+--++..+..........++|+|++|+..|..+.+.+.........
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~~~ 86 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEKELV 86 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHHHhh
Confidence 45899999999764 8899999999999998865555555544322234557999999999999998888763321000
Q ss_pred eEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHH
Q 007481 99 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR 135 (602)
Q Consensus 99 ~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~ 135 (602)
. ..+ . ......+..-..+-|+|...|+..+-
T Consensus 87 ~----~~~-~-~~~~~~~~~~~~~~i~T~hsf~~~~l 117 (1232)
T 3u4q_A 87 Q----RPG-S-LHIRRQLSLLNRASISTLHSFCLQVL 117 (1232)
T ss_dssp H----STT-C-HHHHHHHHHTTTSEEECHHHHHHHHH
T ss_pred c----Ccc-h-HHHHHHHhccCCCeEEeHHHHHHHHH
Confidence 0 000 0 11112222334678899888876554
No 115
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.93 E-value=0.034 Score=54.72 Aligned_cols=17 Identities=29% Similarity=0.118 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
..+++.||+|+|||..+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999754
No 116
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.93 E-value=0.0074 Score=67.94 Aligned_cols=81 Identities=15% Similarity=0.037 Sum_probs=57.9
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhc---C
Q 007481 20 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF---T 96 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~---~ 96 (602)
.++|-|.+++.. .+.+++|.|+.|||||.+..--+...+.... ....++|+|+.|+..|.++.+.+..+... .
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~--~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~ 77 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG--YQARHIAAVTFTNKAAREMKERVGQTLGRKEAR 77 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC--CCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTT
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC--CCHHHeEEEeccHHHHHHHHHHHHHHcCccccc
Confidence 479999999975 3678999999999999875444444433311 23457999999999999999988876432 2
Q ss_pred CceEEEEE
Q 007481 97 DIRCCLVV 104 (602)
Q Consensus 97 ~i~v~~~~ 104 (602)
++.|..++
T Consensus 78 ~~~v~Tfh 85 (673)
T 1uaa_A 78 GLMISTFH 85 (673)
T ss_dssp TSEEEEHH
T ss_pred CCEEEeHH
Confidence 35555444
No 117
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.92 E-value=0.014 Score=59.76 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=27.9
Q ss_pred CcHHHHHHHHHHhc----CC---CEEEEcCCCchHHHHHHHHHHHHHH
Q 007481 21 PTPIQAACIPLALT----GR---DICGSAITGSGKTAAFALPTLERLL 61 (602)
Q Consensus 21 pt~~Q~~~i~~~l~----g~---dvii~a~TGSGKT~a~~l~il~~l~ 61 (602)
++|+|.+++..+.. |+ .+++.||.|+|||..+ ..+...+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a-~~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALI-YALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHH-HHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHH-HHHHHHHh
Confidence 46888888766543 43 3889999999999764 44444443
No 118
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.88 E-value=0.028 Score=59.36 Aligned_cols=128 Identities=16% Similarity=0.160 Sum_probs=69.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEc--ChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHH
Q 007481 37 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT--PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 114 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~--Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~ 114 (602)
-+++.+++|+|||+... -+...+... +.+|+++. +.+.-+ .+.+..++...++.+.....+..
T Consensus 99 vI~lvG~~GsGKTTt~~-kLA~~l~~~-----G~kVllv~~D~~r~~a---~eqL~~~~~~~gv~~~~~~~~~d------ 163 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAG-KLAYFYKKR-----GYKVGLVAADVYRPAA---YDQLLQLGNQIGVQVYGEPNNQN------ 163 (433)
T ss_dssp EEEECCCTTSCHHHHHH-HHHHHHHHT-----TCCEEEEEECCSCHHH---HHHHHHHHHTTTCCEECCTTCSC------
T ss_pred EEEEECCCCCCHHHHHH-HHHHHHHHc-----CCeEEEEecCccchhH---HHHHHHHHHhcCCceeeccccCC------
Confidence 35689999999997532 222233222 23465554 333332 33455555555654432222111
Q ss_pred HHcCCCcEEEECcHHHH-HHHHccCCCCCCCcceEEEeCccccc---cCCcHHHHHHHHHhCCCCcceeeeeccCChhHH
Q 007481 115 ALRSMPDIVVATPGRMI-DHLRNSMSVDLDDLAVLILDEADRLL---ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVD 190 (602)
Q Consensus 115 ~l~~~~~IvI~Tp~~L~-~~l~~~~~~~l~~l~llVlDEah~l~---~~gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~ 190 (602)
|..+. +.+.. .....+++||||++.++. +..+...+..+...+.+..-++.++|+...+..
T Consensus 164 ------------p~~i~~~al~~---a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~ 228 (433)
T 3kl4_A 164 ------------PIEIAKKGVDI---FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY 228 (433)
T ss_dssp ------------HHHHHHHHHHH---TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH
T ss_pred ------------HHHHHHHHHHH---HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH
Confidence 22221 22222 223467899999998754 333566677777766666667778887665554
Q ss_pred HHHH
Q 007481 191 ELIK 194 (602)
Q Consensus 191 ~l~~ 194 (602)
..+.
T Consensus 229 ~~a~ 232 (433)
T 3kl4_A 229 DLAS 232 (433)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 119
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.87 E-value=0.015 Score=65.98 Aligned_cols=82 Identities=16% Similarity=0.116 Sum_probs=58.5
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhc--C
Q 007481 19 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF--T 96 (602)
Q Consensus 19 ~~pt~~Q~~~i~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~--~ 96 (602)
..++|-|.+++.. .+..++|.|+.|||||.+..--+...+... ...+.++|+|+.|+..|.++.+.+..+... .
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~--~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~~ 85 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEK--HVAPWNILAITFTNKAAREMRERVQSLLGGAAE 85 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTT--CCCGGGEEEEESSHHHHHHHHHHHHHHHGGGGT
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhc--CCCHHHeEEEeccHHHHHHHHHHHHHHhccccc
Confidence 5689999999975 357899999999999987544444433322 124457999999999999998888776432 2
Q ss_pred CceEEEEE
Q 007481 97 DIRCCLVV 104 (602)
Q Consensus 97 ~i~v~~~~ 104 (602)
++.+..++
T Consensus 86 ~~~v~Tfh 93 (724)
T 1pjr_A 86 DVWISTFH 93 (724)
T ss_dssp TSEEEEHH
T ss_pred CcEEeeHH
Confidence 34454443
No 120
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.70 E-value=0.087 Score=49.15 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=26.2
Q ss_pred CCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeecc
Q 007481 143 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 184 (602)
Q Consensus 143 ~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SAT 184 (602)
....+|||||+|.+... ....+..++...+....+|+.|..
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeCC
Confidence 45679999999997653 344555566665555555555443
No 121
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.48 E-value=0.064 Score=56.97 Aligned_cols=17 Identities=24% Similarity=0.159 Sum_probs=14.9
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
..+++.||+|+|||..+
T Consensus 131 ~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp CCEEEECSSSSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999753
No 122
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.38 E-value=0.18 Score=53.18 Aligned_cols=125 Identities=15% Similarity=0.169 Sum_probs=68.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEc--ChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHH
Q 007481 37 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT--PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 114 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~--Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~ 114 (602)
-+++++++|+|||+.. .-+...+... +.+|++++ |.+.-+ ++.+..|+...++.+.....+.+
T Consensus 102 vIlivG~~G~GKTTt~-~kLA~~l~~~-----G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~~~~d------ 166 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTV-AKLARYFQKR-----GYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNPQEKD------ 166 (443)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHHTT-----TCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCTTCCC------
T ss_pred EEEEECcCCCCHHHHH-HHHHHHHHHC-----CCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecCCCCC------
Confidence 3568999999999863 3333333322 23465555 333332 34566666666765543222211
Q ss_pred HHcCCCcEEEECcHHH----HHHHHccCCCCCCCcceEEEeCccccccC-CcHHHHHHHHHhCCCCcceeeeeccCChhH
Q 007481 115 ALRSMPDIVVATPGRM----IDHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLTEDV 189 (602)
Q Consensus 115 ~l~~~~~IvI~Tp~~L----~~~l~~~~~~~l~~l~llVlDEah~l~~~-gf~~~i~~i~~~~~~~~q~il~SAT~~~~~ 189 (602)
|..+ +..+.. ..++++|||.+-++... .....+..+.....+..-++.++||...+.
T Consensus 167 ------------p~~i~~~al~~a~~------~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a 228 (443)
T 3dm5_A 167 ------------AIKLAKEGVDYFKS------KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA 228 (443)
T ss_dssp ------------HHHHHHHHHHHHHH------TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH
T ss_pred ------------HHHHHHHHHHHHHh------CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH
Confidence 2211 222222 23679999999765432 234455555555555556677788776555
Q ss_pred HHHHH
Q 007481 190 DELIK 194 (602)
Q Consensus 190 ~~l~~ 194 (602)
...+.
T Consensus 229 ~~~a~ 233 (443)
T 3dm5_A 229 YNQAL 233 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 123
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.31 E-value=0.099 Score=47.40 Aligned_cols=25 Identities=20% Similarity=0.049 Sum_probs=18.0
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
..++++.||+|+|||..+ ..+...+
T Consensus 43 ~~~vll~G~~G~GKT~la-~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV-EGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred CCceEEECCCCCCHHHHH-HHHHHHH
Confidence 467999999999999753 3334443
No 124
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.30 E-value=0.055 Score=55.66 Aligned_cols=17 Identities=35% Similarity=0.403 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCchHHHH
Q 007481 35 GRDICGSAITGSGKTAA 51 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a 51 (602)
+..+++.||+|+|||..
T Consensus 44 ~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCEEECBCTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 46899999999999975
No 125
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.12 E-value=0.093 Score=46.27 Aligned_cols=20 Identities=15% Similarity=0.140 Sum_probs=17.0
Q ss_pred hcCCCEEEEcCCCchHHHHH
Q 007481 33 LTGRDICGSAITGSGKTAAF 52 (602)
Q Consensus 33 l~g~dvii~a~TGSGKT~a~ 52 (602)
..+.++++.||+|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 35689999999999999753
No 126
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.07 E-value=0.019 Score=54.56 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=27.0
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 80 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~ 80 (602)
|+=.++.+++|||||++ ++-.+.++... +.+|+|+.|...
T Consensus 28 G~l~vitG~MgsGKTT~-lL~~a~r~~~~-----g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEE-LIRRVRRTQFA-----KQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHH-HHHHHHHHHHT-----TCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHH-HHHHHHHHHHC-----CCEEEEEEeccC
Confidence 33455899999999977 46666665543 335999998753
No 127
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.07 E-value=0.055 Score=55.84 Aligned_cols=24 Identities=21% Similarity=0.048 Sum_probs=17.3
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLER 59 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~ 59 (602)
.+.+++.||+|+|||..+ -.+...
T Consensus 45 ~~~vll~G~~G~GKT~la-~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS-KYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHH-HHHHHH
T ss_pred CCcEEEECCCCCCHHHHH-HHHHHH
Confidence 356899999999999753 333333
No 128
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.04 E-value=0.018 Score=63.78 Aligned_cols=115 Identities=20% Similarity=0.269 Sum_probs=74.5
Q ss_pred CCcHHHHHHHHHHhc--CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCC
Q 007481 20 KPTPIQAACIPLALT--GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 97 (602)
Q Consensus 20 ~pt~~Q~~~i~~~l~--g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~ 97 (602)
.||.-|++++..++. ..-.++.|+-|.|||++..+.+. .+. ..++|.+|+.+-+..+.+... .
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a-~~~--------~~~~vtAP~~~a~~~l~~~~~----~-- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLIS-RIA--------GRAIVTAPAKASTDVLAQFAG----E-- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHH-HSS--------SCEEEECSSCCSCHHHHHHHG----G--
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHH-HHH--------hCcEEECCCHHHHHHHHHHhh----C--
Confidence 679999999998887 33467999999999976544443 321 136999999887654433221 1
Q ss_pred ceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcc
Q 007481 98 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 177 (602)
Q Consensus 98 i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q 177 (602)
.|-+..|..+.. . +...++||||||=.+. ...+..++...+
T Consensus 240 -----------------------~i~~~~Pd~~~~---~-----~~~~dlliVDEAAaIp----~pll~~ll~~~~---- 280 (671)
T 2zpa_A 240 -----------------------KFRFIAPDALLA---S-----DEQADWLVVDEAAAIP----APLLHQLVSRFP---- 280 (671)
T ss_dssp -----------------------GCCBCCHHHHHH---S-----CCCCSEEEEETGGGSC----HHHHHHHHTTSS----
T ss_pred -----------------------CeEEeCchhhhh---C-----cccCCEEEEEchhcCC----HHHHHHHHhhCC----
Confidence 022335554332 1 2347899999999764 445556655333
Q ss_pred eeeeeccCChh
Q 007481 178 TMLFSATLTED 188 (602)
Q Consensus 178 ~il~SAT~~~~ 188 (602)
.++||.|....
T Consensus 281 ~v~~~tTv~GY 291 (671)
T 2zpa_A 281 RTLLTTTVQGY 291 (671)
T ss_dssp EEEEEEEBSST
T ss_pred eEEEEecCCcC
Confidence 48888888643
No 129
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.97 E-value=0.081 Score=49.39 Aligned_cols=136 Identities=17% Similarity=0.181 Sum_probs=75.8
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEc------ChHHHHHHHHHHHHHHhhcCCceEEEEECCCCH
Q 007481 36 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT------PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLST 109 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~------Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~ 109 (602)
..+++..++|.|||.+++-.++..+. .+.+|+|+. .+-|. +.+..+ ++.+...-.+...
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g------~G~rV~~vQF~Kg~~~~gE~-----~~l~~L----~v~~~~~g~gf~~ 93 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG------HGKNVGVVQFIKGTWPNGER-----NLLEPH----GVEFQVMATGFTW 93 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH------TTCCEEEEESSCCSSCCHHH-----HHHGGG----TCEEEECCTTCCC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEEeeCCCCCccHH-----HHHHhC----CcEEEEccccccc
Confidence 57889999999999987666665553 344688882 22222 112222 2332221111110
Q ss_pred HHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEEEeCccccccCCc--HHHHHHHHHhCCCCcceeeeeccCCh
Q 007481 110 KMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF--SAEIHELVRLCPKRRQTMLFSATLTE 187 (602)
Q Consensus 110 ~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~gf--~~~i~~i~~~~~~~~q~il~SAT~~~ 187 (602)
..+...- +. ......++.... .+.-..+++||+||.-..+..++ .+.+..++...|....+|+.+--+|+
T Consensus 94 ~~~~~~~----~~--~~a~~~l~~a~~--~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~ 165 (196)
T 1g5t_A 94 ETQNREA----DT--AACMAVWQHGKR--MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHR 165 (196)
T ss_dssp CGGGHHH----HH--HHHHHHHHHHHH--HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCH
T ss_pred CCCCcHH----HH--HHHHHHHHHHHH--HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcH
Confidence 0000000 00 000112222222 12235689999999987766664 45677777888888788888888888
Q ss_pred hHHHHHH
Q 007481 188 DVDELIK 194 (602)
Q Consensus 188 ~~~~l~~ 194 (602)
.+.+.+.
T Consensus 166 ~l~e~AD 172 (196)
T 1g5t_A 166 DILDLAD 172 (196)
T ss_dssp HHHHHCS
T ss_pred HHHHhCc
Confidence 8877664
No 130
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.90 E-value=0.042 Score=54.95 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
.++++.||+|+|||..+
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 47999999999999754
No 131
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.85 E-value=0.044 Score=51.15 Aligned_cols=38 Identities=16% Similarity=0.158 Sum_probs=27.5
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcCh
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 78 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Pt 78 (602)
|+=.++.+|+|||||.- ++-.+.+..... .+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~-Ll~~i~n~~~~~-----~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTE-LMRRVRRFQIAQ-----YKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHHTT-----CCEEEEEET
T ss_pred eEEEEEECCCCCcHHHH-HHHHHHHHHHcC-----CeEEEEccc
Confidence 56667999999999965 466666555442 358999886
No 132
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.78 E-value=0.098 Score=52.67 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=18.9
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLL 61 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~ 61 (602)
+.++++.||+|+|||..+ ..+...+.
T Consensus 152 ~~~lll~G~~GtGKT~La-~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL-AAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHH-HHHHHHHH
T ss_pred CceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 578999999999999753 33444443
No 133
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.75 E-value=0.05 Score=54.98 Aligned_cols=40 Identities=13% Similarity=0.161 Sum_probs=25.3
Q ss_pred CcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeec
Q 007481 144 DLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSA 183 (602)
Q Consensus 144 ~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SA 183 (602)
...+|||||+|.+........+..++...+...++|+.|.
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 5679999999998622234455555555555555655443
No 134
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.71 E-value=0.057 Score=51.18 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=27.2
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 80 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~ 80 (602)
|.=.++.+|+|||||.. ++..+.++... +.+++|+.|...
T Consensus 28 G~I~vitG~M~sGKTT~-Llr~~~r~~~~-----g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEE-LIRRLRRGIYA-----KQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHHT-----TCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHH-HHHHHHHHHHc-----CCceEEEEeccC
Confidence 44566899999999976 45556665543 235899988653
No 135
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.62 E-value=0.078 Score=50.82 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=27.9
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 79 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr 79 (602)
|+=.++.|++|||||.+ ++-.+.+.... +.+++++-|..
T Consensus 19 g~l~v~~G~MgsGKTT~-lL~~~~r~~~~-----g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTE-LMRRVRRFQIA-----QYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHH-HHHHHHHHHTT-----TCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHH-HHHHHHHHHHC-----CCeEEEEeecC
Confidence 56667899999999976 45555555443 33689888764
No 136
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.60 E-value=0.65 Score=41.83 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=17.7
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 36 RDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
..+++.||+|+|||..+ -.+...+
T Consensus 44 ~~~ll~G~~G~GKT~l~-~~~~~~~ 67 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV-EGLAQRI 67 (195)
T ss_dssp CEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred CceEEECCCCCCHHHHH-HHHHHHH
Confidence 67999999999999753 3344444
No 137
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.52 E-value=0.014 Score=55.00 Aligned_cols=40 Identities=13% Similarity=0.136 Sum_probs=24.4
Q ss_pred cceEEEeCccccccCC---c--HHHHHHHHHhCCCCcceeeeecc
Q 007481 145 LAVLILDEADRLLELG---F--SAEIHELVRLCPKRRQTMLFSAT 184 (602)
Q Consensus 145 l~llVlDEah~l~~~g---f--~~~i~~i~~~~~~~~q~il~SAT 184 (602)
-.+|||||||.+.... . ...+..+..+.....++|++|-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 3489999999985321 1 12233333344556678888877
No 138
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.39 E-value=0.12 Score=52.76 Aligned_cols=43 Identities=14% Similarity=0.275 Sum_probs=28.5
Q ss_pred CCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeeccCC
Q 007481 143 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 186 (602)
Q Consensus 143 ~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SAT~~ 186 (602)
....++||||+|.+ +......+..++...+....+|+.|..+.
T Consensus 133 ~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 45779999999994 43345566666766666666666665544
No 139
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.38 E-value=0.037 Score=52.76 Aligned_cols=18 Identities=22% Similarity=0.067 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCchHHHHH
Q 007481 35 GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~ 52 (602)
+..+++.||+|+|||..+
T Consensus 52 ~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 578999999999999753
No 140
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.00 E-value=0.12 Score=58.80 Aligned_cols=79 Identities=15% Similarity=0.053 Sum_probs=65.2
Q ss_pred CCeEEEEeCcHHHHHHHHHHHh----hcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc-cccccCcCCccEEEE
Q 007481 243 TSKVIIFSGTKQAAHRLKILFG----LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-AARGLDIIGVQTVIN 317 (602)
Q Consensus 243 ~~kvIIF~~s~~~a~~l~~~L~----~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~-~~~GlDip~v~~VI~ 317 (602)
+.+++|.++|+..+......+. ..|+.+..+||+++..++..++..+.+|..+|+|+|.. +...+++.++.+||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 5789999999998877765554 44799999999999999999999999999999999964 344577888998885
Q ss_pred cCCC
Q 007481 318 YACP 321 (602)
Q Consensus 318 ~d~p 321 (602)
=...
T Consensus 497 DEaH 500 (780)
T 1gm5_A 497 DEQH 500 (780)
T ss_dssp ESCC
T ss_pred cccc
Confidence 4433
No 141
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.90 E-value=0.18 Score=51.89 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=13.7
Q ss_pred CEEEEcCCCchHHHH
Q 007481 37 DICGSAITGSGKTAA 51 (602)
Q Consensus 37 dvii~a~TGSGKT~a 51 (602)
.+++.||+|+|||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 688999999999975
No 142
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.83 E-value=0.32 Score=45.75 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=22.5
Q ss_pred CcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeec
Q 007481 144 DLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSA 183 (602)
Q Consensus 144 ~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SA 183 (602)
...+|||||+|.+... ....+..++...+....+|+.|.
T Consensus 126 ~~~vlviDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp SSEEEEEETGGGSCHH-HHHHHHHHHHSCCTTEEEEEEES
T ss_pred CceEEEEECcccccHH-HHHHHHHHHhcCCCceEEEEEeC
Confidence 3568999999997533 23344444444444444555443
No 143
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.73 E-value=0.2 Score=50.53 Aligned_cols=17 Identities=24% Similarity=0.155 Sum_probs=14.9
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
+.+++.||+|+|||..+
T Consensus 52 ~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CEEEEECSSSSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57999999999999753
No 144
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.46 E-value=0.27 Score=50.35 Aligned_cols=17 Identities=41% Similarity=0.518 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCchHHHH
Q 007481 35 GRDICGSAITGSGKTAA 51 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a 51 (602)
+..+++.||+|+|||..
T Consensus 45 ~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCEEEEECTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46899999999999975
No 145
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.28 E-value=0.28 Score=49.02 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=25.3
Q ss_pred CCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeec
Q 007481 143 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSA 183 (602)
Q Consensus 143 ~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SA 183 (602)
....+|||||+|.+... ....+..++...+....+|+.+.
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~~ 148 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSCN 148 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 34679999999998643 24445555666555555555443
No 146
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.28 E-value=0.3 Score=50.86 Aligned_cols=78 Identities=9% Similarity=0.005 Sum_probs=64.5
Q ss_pred cCCCeEEEEeCcHHHHHHHHHHHhh---cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccc----cccCcCCcc
Q 007481 241 TFTSKVIIFSGTKQAAHRLKILFGL---AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA----RGLDIIGVQ 313 (602)
Q Consensus 241 ~~~~kvIIF~~s~~~a~~l~~~L~~---~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~----~GlDip~v~ 313 (602)
..+.++||.++++..+..+...+.. .++.+..+||+.+..++...+..+..|..+|+|+|.-.- .-+++..++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 3567999999999999999888887 588999999999999999999999999999999995321 125566788
Q ss_pred EEEEc
Q 007481 314 TVINY 318 (602)
Q Consensus 314 ~VI~~ 318 (602)
+||.=
T Consensus 142 ~iViD 146 (414)
T 3oiy_A 142 FVFVD 146 (414)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 88853
No 147
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.28 E-value=0.11 Score=52.72 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=25.9
Q ss_pred CCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeec
Q 007481 143 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSA 183 (602)
Q Consensus 143 ~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SA 183 (602)
....+|||||+|.+... ....+..++...+....+++.+.
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeC
Confidence 34579999999998653 33455556666555555665543
No 148
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.13 E-value=0.27 Score=49.70 Aligned_cols=17 Identities=35% Similarity=0.237 Sum_probs=14.9
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
.++++.||+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 58999999999999753
No 149
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.02 E-value=0.43 Score=46.84 Aligned_cols=18 Identities=28% Similarity=0.207 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchHHHHH
Q 007481 35 GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~ 52 (602)
++.+++.||+|+|||..+
T Consensus 51 ~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CSEEEEESSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 578999999999999753
No 150
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.88 E-value=0.31 Score=48.92 Aligned_cols=40 Identities=13% Similarity=0.191 Sum_probs=25.6
Q ss_pred CCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeee
Q 007481 142 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~S 182 (602)
.....++||||||.|.... .+.+..+++.-|....+|+.|
T Consensus 80 ~~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 3568899999999986543 344555555555455555554
No 151
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.68 E-value=0.17 Score=51.93 Aligned_cols=17 Identities=24% Similarity=0.155 Sum_probs=14.9
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
+.+++.||+|+|||..+
T Consensus 85 ~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCEEEECSTTSCHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 57999999999999753
No 152
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.22 E-value=0.44 Score=48.65 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=23.9
Q ss_pred CCCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeee
Q 007481 142 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182 (602)
Q Consensus 142 l~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~S 182 (602)
.....+|||||+|.+... ....+..++...+....+|+.|
T Consensus 117 ~~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEEE
T ss_pred cCCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 345679999999998643 2344445555544444444444
No 153
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=91.85 E-value=0.59 Score=49.99 Aligned_cols=87 Identities=13% Similarity=0.169 Sum_probs=55.1
Q ss_pred cCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECC-------
Q 007481 34 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGG------- 106 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~------- 106 (602)
.|....+.+.||||||++. ..++... +..+|||+|+...|.|+++.+..|... .|..+-..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~-a~l~~~~--------~~p~lvv~~~~~~A~~l~~~l~~~~~~---~v~~fp~~e~lpyd~ 80 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLV-AEIAERH--------AGPVVLIAPDMQNALRLHDEISQFTDQ---MVMNLADWETLPYDS 80 (483)
T ss_dssp TTCEEEEECCCTTHHHHHH-HHHHHHS--------SSCEEEEESSHHHHHHHHHHHHHTCSS---CEEECCCCCSCTTCS
T ss_pred CCCeEEEeCCCchHHHHHH-HHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHhhCCC---cEEEEeCcccccccc
Confidence 3567889999999999752 3333321 124899999999999999999987532 23333221
Q ss_pred C--CHHH-------HHHHHcCCCcEEEECcHHHHH
Q 007481 107 L--STKM-------QETALRSMPDIVVATPGRMID 132 (602)
Q Consensus 107 ~--~~~~-------~~~~l~~~~~IvI~Tp~~L~~ 132 (602)
. +... ....+.....|||+|...++.
T Consensus 81 ~~p~~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~~ 115 (483)
T 3hjh_A 81 FSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQ 115 (483)
T ss_dssp SCCCHHHHHHHHHHHHHGGGCCSSEEEEEHHHHHB
T ss_pred cCCChHHHHHHHHHHHHHHhCCCCEEEEEHHHHhh
Confidence 0 1111 112223456799999777764
No 154
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.84 E-value=1.1 Score=43.08 Aligned_cols=18 Identities=22% Similarity=0.089 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCchHHHHH
Q 007481 35 GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~ 52 (602)
.+.+++.||+|+|||..+
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467899999999999753
No 155
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.77 E-value=0.45 Score=47.48 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchHHHHH
Q 007481 35 GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~ 52 (602)
++.+++.||+|+|||..+
T Consensus 49 ~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CSEEEEECSSSSSHHHHH
T ss_pred CceEEEECCCCcCHHHHH
Confidence 577999999999999753
No 156
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.71 E-value=0.27 Score=49.93 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=26.0
Q ss_pred CCcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeee
Q 007481 143 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 182 (602)
Q Consensus 143 ~~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~S 182 (602)
....++|+||+|.|... ....+..+++..+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 34789999999988643 3445556666666656555554
No 157
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.58 E-value=0.32 Score=48.53 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=24.4
Q ss_pred CcceEEEeCccccccCCcHHHHHHHHHhCCCCcceeeeec
Q 007481 144 DLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSA 183 (602)
Q Consensus 144 ~l~llVlDEah~l~~~gf~~~i~~i~~~~~~~~q~il~SA 183 (602)
...+|||||+|.+... ....+..++...+....+|+.|.
T Consensus 107 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~~ 145 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFACN 145 (323)
T ss_dssp CCEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEECcccCCHH-HHHHHHHHHhccCCCceEEEEeC
Confidence 3679999999997653 23334455555555555665553
No 158
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.55 E-value=0.31 Score=50.58 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCchHHHHH
Q 007481 35 GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~ 52 (602)
.+++++.||+|+|||..+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 478999999999999753
No 159
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=91.33 E-value=0.35 Score=48.42 Aligned_cols=17 Identities=24% Similarity=0.135 Sum_probs=15.0
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
..+++.||+|+|||..+
T Consensus 39 ~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCEEECCTTCCCHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 68999999999999753
No 160
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.10 E-value=1.3 Score=45.94 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=15.2
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
+.+++.||+|+|||+.+
T Consensus 183 rGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCEEEESCSSSSHHHHH
T ss_pred CceEEeCCCCCCHHHHH
Confidence 78999999999999753
No 161
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.07 E-value=0.18 Score=51.05 Aligned_cols=17 Identities=29% Similarity=0.233 Sum_probs=14.9
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
+.+++.||+|+|||..+
T Consensus 46 ~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLA 62 (322)
T ss_dssp SEEEEESSSSSCHHHHH
T ss_pred ceEEEECCCCccHHHHH
Confidence 67999999999999753
No 162
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=90.79 E-value=2.2 Score=39.32 Aligned_cols=72 Identities=19% Similarity=0.290 Sum_probs=54.0
Q ss_pred cEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHH----cCCCcEEEECcHHHHHHHHccCCCCCCCc
Q 007481 70 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDL 145 (602)
Q Consensus 70 ~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l----~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l 145 (602)
.++||.|+++.-+..+++.+... ++.+..++|+.+.......+ .+..+|+|+| +.+.. .+++..+
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~--Gldi~~v 123 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASK--GLDFPAI 123 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHT--TCCCCCC
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchhc--CCCcccC
Confidence 36999999999999998888764 77889999998876544333 3567999999 33333 5777888
Q ss_pred ceEEEeC
Q 007481 146 AVLILDE 152 (602)
Q Consensus 146 ~llVlDE 152 (602)
++||.-+
T Consensus 124 ~~VI~~d 130 (191)
T 2p6n_A 124 QHVINYD 130 (191)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8877633
No 163
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.69 E-value=0.71 Score=43.92 Aligned_cols=49 Identities=20% Similarity=0.025 Sum_probs=28.6
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 90 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~ 90 (602)
|.-+++.||+|+|||..+ +-++..+... +..++++.... ...++.+.+.
T Consensus 23 G~~~~i~G~~GsGKTtl~-~~~~~~~~~~-----~~~v~~~~~e~-~~~~~~~~~~ 71 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFS-QQFLWNGLKM-----GEPGIYVALEE-HPVQVRQNMA 71 (247)
T ss_dssp TCEEEEEECTTSSHHHHH-HHHHHHHHHT-----TCCEEEEESSS-CHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHHHHhc-----CCeEEEEEccC-CHHHHHHHHH
Confidence 567789999999999753 3343333332 22477765432 2344444444
No 164
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=90.52 E-value=0.11 Score=51.76 Aligned_cols=16 Identities=38% Similarity=0.372 Sum_probs=14.0
Q ss_pred CEEEEcCCCchHHHHH
Q 007481 37 DICGSAITGSGKTAAF 52 (602)
Q Consensus 37 dvii~a~TGSGKT~a~ 52 (602)
++++.||+|+|||..+
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 6999999999999753
No 165
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.37 E-value=0.8 Score=43.45 Aligned_cols=24 Identities=21% Similarity=0.032 Sum_probs=18.0
Q ss_pred HHHHhc-----CCCEEEEcCCCchHHHHH
Q 007481 29 IPLALT-----GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 29 i~~~l~-----g~dvii~a~TGSGKT~a~ 52 (602)
+..++. |.-+++.+|+|+|||..+
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 455553 466789999999999754
No 166
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=90.28 E-value=9 Score=38.10 Aligned_cols=54 Identities=15% Similarity=0.301 Sum_probs=30.9
Q ss_pred CcHHHHHHHHccCCCCCCCcceEEEeCcccccc---CCcHHHHHHHHHhCCCCcceeeeeccC
Q 007481 126 TPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE---LGFSAEIHELVRLCPKRRQTMLFSATL 185 (602)
Q Consensus 126 Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~---~gf~~~i~~i~~~~~~~~q~il~SAT~ 185 (602)
+...+++.+..... .--+|||||+|.+.. ..+...+..+....+ ... ++++++.
T Consensus 123 ~~~~l~~~l~~~~~----~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~-~i~~g~~ 179 (357)
T 2fna_A 123 SFANLLESFEQASK----DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIK-FIMSGSE 179 (357)
T ss_dssp CHHHHHHHHHHTCS----SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEE-EEEEESS
T ss_pred hHHHHHHHHHhcCC----CCeEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeE-EEEEcCc
Confidence 34556666654211 133899999999864 346666666665543 233 4444443
No 167
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.25 E-value=1.2 Score=47.32 Aligned_cols=38 Identities=26% Similarity=0.183 Sum_probs=23.8
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcC
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 77 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~P 77 (602)
|.-+++.|++|+|||.. ++-+...+.... +.+|+|+..
T Consensus 203 G~liiI~G~pG~GKTtl-~l~ia~~~~~~~----g~~Vl~~s~ 240 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAF-ALNIAQNVATKT----NENVAIFSL 240 (454)
T ss_dssp TCEEEEECCTTSCHHHH-HHHHHHHHHHHS----SCCEEEEES
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHHhC----CCcEEEEEC
Confidence 45677999999999965 344444443211 224777764
No 168
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.22 E-value=0.26 Score=52.04 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=15.2
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
+.+|+.||+|+|||+.+
T Consensus 216 rGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 78999999999999753
No 169
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=90.17 E-value=0.3 Score=51.84 Aligned_cols=17 Identities=24% Similarity=0.204 Sum_probs=14.5
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
.++++.||+|+|||..+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 36899999999999753
No 170
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=90.14 E-value=0.77 Score=48.59 Aligned_cols=17 Identities=29% Similarity=0.233 Sum_probs=14.9
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
+.+++.||+|+|||..+
T Consensus 168 ~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLA 184 (444)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 67999999999999753
No 171
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.92 E-value=0.72 Score=43.33 Aligned_cols=18 Identities=33% Similarity=0.241 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCchHHHHH
Q 007481 35 GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~ 52 (602)
|.-+++.||+|+|||..+
T Consensus 23 G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp TCEEEEECSTTSSHHHHH
T ss_pred CCEEEEEcCCCCCHHHHH
Confidence 566789999999999653
No 172
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.79 E-value=1.2 Score=52.88 Aligned_cols=76 Identities=13% Similarity=0.113 Sum_probs=63.4
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHh----hcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC-ccccccCcCCccEEE
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFG----LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-VAARGLDIIGVQTVI 316 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~----~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~-~~~~GlDip~v~~VI 316 (602)
.+.+++|.++|...+......+. ..++.+..+++..+..++..++..+..|..+|+|+|. .+...+++.++.+||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 45699999999998887766665 3467899999999999999999999999999999994 455567888888888
Q ss_pred E
Q 007481 317 N 317 (602)
Q Consensus 317 ~ 317 (602)
.
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 4
No 173
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=89.69 E-value=0.66 Score=54.92 Aligned_cols=78 Identities=9% Similarity=0.025 Sum_probs=65.0
Q ss_pred cCCCeEEEEeCcHHHHHHHHHHHhh---cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc-----cccccCcCCc
Q 007481 241 TFTSKVIIFSGTKQAAHRLKILFGL---AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----AARGLDIIGV 312 (602)
Q Consensus 241 ~~~~kvIIF~~s~~~a~~l~~~L~~---~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~-----~~~GlDip~v 312 (602)
..+.++||.++|+..+..+...|.. .++.+..+||+++..++...+..+..|..+|||+|.- +.. +++.++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l 197 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRF 197 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCC
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCc
Confidence 3467899999999999999999988 5678999999999989999999999999999999953 222 556788
Q ss_pred cEEEEcC
Q 007481 313 QTVINYA 319 (602)
Q Consensus 313 ~~VI~~d 319 (602)
.+||.=.
T Consensus 198 ~~lViDE 204 (1104)
T 4ddu_A 198 DFVFVDD 204 (1104)
T ss_dssp SEEEESC
T ss_pred CEEEEeC
Confidence 8888533
No 174
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=89.54 E-value=1.1 Score=47.89 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=25.7
Q ss_pred ceEEEeCccccccCC----------cHHHHHHHHHhCCCCcceeeeeccCCh
Q 007481 146 AVLILDEADRLLELG----------FSAEIHELVRLCPKRRQTMLFSATLTE 187 (602)
Q Consensus 146 ~llVlDEah~l~~~g----------f~~~i~~i~~~~~~~~q~il~SAT~~~ 187 (602)
.+|+|||+|.+.... ....+..++........++++.||-.+
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 589999999887531 123344445555555566777776543
No 175
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.43 E-value=0.32 Score=46.55 Aligned_cols=43 Identities=9% Similarity=0.106 Sum_probs=26.2
Q ss_pred CcceEEEeCcccccc-----CCcHHHHHHHHHhCCCCcceeeeeccCC
Q 007481 144 DLAVLILDEADRLLE-----LGFSAEIHELVRLCPKRRQTMLFSATLT 186 (602)
Q Consensus 144 ~l~llVlDEah~l~~-----~gf~~~i~~i~~~~~~~~q~il~SAT~~ 186 (602)
..++||+||.-.+++ ......+..++..+...-.+++++.-..
T Consensus 135 ~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~ 182 (251)
T 2ehv_A 135 NAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp TCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred CCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 467999999987765 3344446666655543334555555443
No 176
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=89.36 E-value=1.3 Score=39.60 Aligned_cols=90 Identities=17% Similarity=0.226 Sum_probs=61.7
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHH----cCC
Q 007481 44 TGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSM 119 (602)
Q Consensus 44 TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l----~~~ 119 (602)
....|... +.-++... .+.++||.|+++..+..+++.+... ++.+..++|+.+.......+ .+.
T Consensus 18 ~~~~K~~~-L~~ll~~~-------~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~ 85 (163)
T 2hjv_A 18 REENKFSL-LKDVLMTE-------NPDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGE 85 (163)
T ss_dssp CGGGHHHH-HHHHHHHH-------CCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred ChHHHHHH-HHHHHHhc-------CCCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 34667643 34444432 2336999999999999998888764 78899999998866544332 456
Q ss_pred CcEEEECcHHHHHHHHccCCCCCCCcceEEEeC
Q 007481 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 152 (602)
Q Consensus 120 ~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDE 152 (602)
.+|+|+|. .+. ..+++..+++||.-+
T Consensus 86 ~~vlv~T~-----~~~--~Gld~~~~~~Vi~~~ 111 (163)
T 2hjv_A 86 YRYLVATD-----VAA--RGIDIENISLVINYD 111 (163)
T ss_dssp CSEEEECG-----GGT--TTCCCSCCSEEEESS
T ss_pred CeEEEECC-----hhh--cCCchhcCCEEEEeC
Confidence 78999992 222 357777888887644
No 177
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=89.30 E-value=0.43 Score=49.41 Aligned_cols=16 Identities=25% Similarity=0.219 Sum_probs=13.4
Q ss_pred CCEEE--EcCCCchHHHH
Q 007481 36 RDICG--SAITGSGKTAA 51 (602)
Q Consensus 36 ~dvii--~a~TGSGKT~a 51 (602)
..+++ .||+|+|||..
T Consensus 51 ~~~li~i~G~~G~GKT~L 68 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTL 68 (412)
T ss_dssp EEEEEECTTCCSSSHHHH
T ss_pred CEEEEeCcCcCCCCHHHH
Confidence 45778 89999999975
No 178
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=89.16 E-value=1.4 Score=39.77 Aligned_cols=73 Identities=12% Similarity=0.227 Sum_probs=53.6
Q ss_pred CcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHH----cCCCcEEEECcHHHHHHHHccCCCCCCC
Q 007481 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 144 (602)
Q Consensus 69 ~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l----~~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 144 (602)
..++||.|+++..+..++..+.. .++.+..++|+.+.......+ .+..+|+|+|. .+ ...+++..
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~--~~Gid~~~ 102 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQ----DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VC--ARGIDVKQ 102 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SC--CTTTCCTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----ch--hcCCCccc
Confidence 45799999999999988887775 377889999998876544332 45679999992 11 23567788
Q ss_pred cceEEEeC
Q 007481 145 LAVLILDE 152 (602)
Q Consensus 145 l~llVlDE 152 (602)
+++||.-+
T Consensus 103 ~~~Vi~~d 110 (175)
T 2rb4_A 103 VTIVVNFD 110 (175)
T ss_dssp EEEEEESS
T ss_pred CCEEEEeC
Confidence 88888533
No 179
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.00 E-value=2.5 Score=44.39 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=14.9
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
+.+++.||+|+|||+.+
T Consensus 207 rGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CEEEEESCTTTTHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 67999999999999753
No 180
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=88.99 E-value=2.5 Score=45.56 Aligned_cols=121 Identities=13% Similarity=0.068 Sum_probs=81.3
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc------ccccCcCCccEEE
Q 007481 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------ARGLDIIGVQTVI 316 (602)
Q Consensus 243 ~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~------~~GlDip~v~~VI 316 (602)
.+.+||.++++..+......|...|+.+..+||+.+..++..+...+..|..+||++|+-- ...++...+.+||
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vV 144 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLA 144 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEE
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEE
Confidence 5789999999999999999999999999999999999999999999999999999998521 1223335566666
Q ss_pred EcCC----CC--ChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhc
Q 007481 317 NYAC----PR--DLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAG 363 (602)
Q Consensus 317 ~~d~----p~--s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~ 363 (602)
.=.+ .| +......++++....-..-..+.+....+......+.+.++
T Consensus 145 iDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~ 197 (523)
T 1oyw_A 145 VDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLG 197 (523)
T ss_dssp ESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHT
T ss_pred EeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhC
Confidence 3111 11 11222344554333222234455555555565666665554
No 181
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=88.82 E-value=2.7 Score=37.35 Aligned_cols=87 Identities=13% Similarity=0.227 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHH----cCCCcE
Q 007481 47 GKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDI 122 (602)
Q Consensus 47 GKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l----~~~~~I 122 (602)
.|..+ +..++... .+.++||.|+++..+..++..+... ++.+..++|+.+.......+ .+...|
T Consensus 16 ~K~~~-l~~ll~~~-------~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 83 (165)
T 1fuk_A 16 YKYEC-LTDLYDSI-------SVTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRI 83 (165)
T ss_dssp GHHHH-HHHHHHHT-------TCSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred hHHHH-HHHHHHhC-------CCCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEE
Confidence 36654 45555442 2346999999999999888888763 67889999998866544332 456789
Q ss_pred EEECcHHHHHHHHccCCCCCCCcceEEEeC
Q 007481 123 VVATPGRMIDHLRNSMSVDLDDLAVLILDE 152 (602)
Q Consensus 123 vI~Tp~~L~~~l~~~~~~~l~~l~llVlDE 152 (602)
+|+|. .+. ..+++..+++||.-+
T Consensus 84 lv~T~-----~~~--~G~d~~~~~~Vi~~~ 106 (165)
T 1fuk_A 84 LISTD-----LLA--RGIDVQQVSLVINYD 106 (165)
T ss_dssp EEEEG-----GGT--TTCCCCSCSEEEESS
T ss_pred EEEcC-----hhh--cCCCcccCCEEEEeC
Confidence 99992 222 356777888877644
No 182
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.78 E-value=0.42 Score=50.09 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=15.1
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
+.+|+.||+|+|||+.+
T Consensus 217 rGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SEEEEESSTTTTHHHHH
T ss_pred CCCceECCCCchHHHHH
Confidence 78999999999999753
No 183
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.64 E-value=1.9 Score=45.28 Aligned_cols=17 Identities=24% Similarity=0.174 Sum_probs=15.1
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
+.+++.||+|+|||+.+
T Consensus 216 rGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred CeeEEECcCCCCHHHHH
Confidence 78999999999999753
No 184
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=88.63 E-value=1.3 Score=48.62 Aligned_cols=120 Identities=7% Similarity=0.052 Sum_probs=79.3
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHH--hcCCceEEEEcCc-c----------ccccCc
Q 007481 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF--RKQHVDFLIATDV-A----------ARGLDI 309 (602)
Q Consensus 243 ~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F--~~g~~~iLVaT~~-~----------~~GlDi 309 (602)
.+.+||.++++..+......|...|+.+..++|+++..++..++..+ ..+..+||++|+- + ...+++
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~ 163 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEA 163 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHT
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhc
Confidence 57999999999999999999999999999999999999999988888 4689999999972 1 122334
Q ss_pred CCccEEEEcCCC----CC---hhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHhc
Q 007481 310 IGVQTVINYACP----RD---LTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAG 363 (602)
Q Consensus 310 p~v~~VI~~d~p----~s---~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~~ 363 (602)
..+++||.=.+. |. ...| ..++...+.-..-..+.+....+......+...++
T Consensus 164 ~~i~~iViDEAH~is~~g~dfr~~~-~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~ 223 (591)
T 2v1x_A 164 RRFTRIAVDEVHCCSQWGHDFRPDY-KALGILKRQFPNASLIGLTATATNHVLTDAQKILC 223 (591)
T ss_dssp TCEEEEEEETGGGGSTTCTTCCGGG-GGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTT
T ss_pred cCCcEEEEECcccccccccccHHHH-HHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhC
Confidence 566766631111 11 1122 22333222222334555555556666666666554
No 185
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=88.24 E-value=0.64 Score=49.21 Aligned_cols=119 Identities=18% Similarity=0.142 Sum_probs=57.2
Q ss_pred HHHHhc----CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEE-EE
Q 007481 29 IPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCC-LV 103 (602)
Q Consensus 29 i~~~l~----g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~-~~ 103 (602)
+..++. |.-+++.|++|+|||.. ++-+...+.... +.+|+|+..- .-..|+...+.... .++... +.
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~l-al~ia~~~a~~~----g~~vl~~slE-~~~~~l~~R~~~~~--~~i~~~~l~ 261 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAF-ALTIAQNAALKE----GVGVGIYSLE-MPAAQLTLRMMCSE--ARIDMNRVR 261 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHH-HHHHHHHHHHTT----CCCEEEEESS-SCHHHHHHHHHHHH--TTCCTTTCC
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHhC----CCeEEEEECC-CCHHHHHHHHHHHH--cCCCHHHHh
Confidence 444553 35577999999999964 455544444321 2247777543 12234443332211 111111 01
Q ss_pred ECCCCHHHHHHH-------HcCCCcEEEE-----CcHHHHHHHHccCCCCCCCcceEEEeCccccccC
Q 007481 104 VGGLSTKMQETA-------LRSMPDIVVA-----TPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 159 (602)
Q Consensus 104 ~g~~~~~~~~~~-------l~~~~~IvI~-----Tp~~L~~~l~~~~~~~l~~l~llVlDEah~l~~~ 159 (602)
.|..+.. .|.. +.. ..+.|. |+..+...++.-. .-..+++||||..+.+...
T Consensus 262 ~g~l~~~-~~~~~~~a~~~l~~-~~l~i~d~~~~s~~~l~~~~~~l~--~~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 262 LGQLTDR-DFSRLVDVASRLSE-APIYIDDTPDLTLMEVRARARRLV--SQNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp GGGCCHH-HHHHHHHHHHHHHT-SCEEEECCTTCBHHHHHHHHHHHH--HHSCCCEEEEECGGGCBCC
T ss_pred CCCCCHH-HHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEEcChhhcCCC
Confidence 2333322 2221 222 345553 3444544433210 0013779999999988653
No 186
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=88.22 E-value=2 Score=40.07 Aligned_cols=72 Identities=18% Similarity=0.290 Sum_probs=54.2
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhhc-----CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc-----c-ccccCcCC
Q 007481 243 TSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----A-ARGLDIIG 311 (602)
Q Consensus 243 ~~kvIIF~~s~~~a~~l~~~L~~~-----g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~-----~-~~GlDip~ 311 (602)
..++||.++++..+..+...+... ++.+..++|+.+..+.... +..+..+|+|+|.- + ...+++..
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999999887777654 7889999999987665443 44577899999952 1 23467788
Q ss_pred ccEEEE
Q 007481 312 VQTVIN 317 (602)
Q Consensus 312 v~~VI~ 317 (602)
+++||.
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888885
No 187
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.11 E-value=0.47 Score=53.89 Aligned_cols=16 Identities=31% Similarity=0.167 Sum_probs=14.0
Q ss_pred CEEEEcCCCchHHHHH
Q 007481 37 DICGSAITGSGKTAAF 52 (602)
Q Consensus 37 dvii~a~TGSGKT~a~ 52 (602)
++++.||||+|||..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4999999999999753
No 188
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.09 E-value=0.45 Score=50.30 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchHHHHH
Q 007481 35 GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~ 52 (602)
-+.+|+.||+|+|||+.+
T Consensus 243 prGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSEEEECSCTTSSHHHHH
T ss_pred CCceEeeCCCCCcHHHHH
Confidence 378999999999999753
No 189
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=87.72 E-value=1.6 Score=40.91 Aligned_cols=70 Identities=19% Similarity=0.272 Sum_probs=53.0
Q ss_pred cEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHH----cCCCcEEEECcHHHHHHHHccCCCCCCCc
Q 007481 70 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDL 145 (602)
Q Consensus 70 ~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l----~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l 145 (602)
.++||.||++.-+..+++.+... ++.+..++|+.+.......+ .+..+|+|+| +.+. .++++..+
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~--~Gidi~~v 100 (212)
T 3eaq_A 32 DRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVAA--RGLDIPQV 100 (212)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTTT--CSSSCCCB
T ss_pred CeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chhh--cCCCCccC
Confidence 36999999999999988888764 77889999998876655443 4567899999 2222 35677888
Q ss_pred ceEEE
Q 007481 146 AVLIL 150 (602)
Q Consensus 146 ~llVl 150 (602)
++||.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88774
No 190
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=87.45 E-value=2.4 Score=40.76 Aligned_cols=72 Identities=15% Similarity=0.266 Sum_probs=53.2
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhc----CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc-----c--ccccCcC
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGLA----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----A--ARGLDII 310 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~~----g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~-----~--~~GlDip 310 (602)
.+.++||.++++..+..+...+... ++.+..++|+.+..+....+ .+..+|+|+|.- + ..++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 3567999999999988887666544 78899999998876554433 257899999942 1 1356778
Q ss_pred CccEEEE
Q 007481 311 GVQTVIN 317 (602)
Q Consensus 311 ~v~~VI~ 317 (602)
.+++||.
T Consensus 186 ~~~~lVi 192 (249)
T 3ber_A 186 ALKYLVM 192 (249)
T ss_dssp TCCEEEE
T ss_pred ccCEEEE
Confidence 8888875
No 191
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=87.10 E-value=2.7 Score=37.86 Aligned_cols=89 Identities=12% Similarity=0.190 Sum_probs=61.0
Q ss_pred CchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHH----cCCC
Q 007481 45 GSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMP 120 (602)
Q Consensus 45 GSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l----~~~~ 120 (602)
...|... +..++... .+.++||.|+++..+..+++.+... ++.+..++|+.+.......+ .+..
T Consensus 15 ~~~K~~~-L~~ll~~~-------~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 15 DNEKNRK-LFDLLDVL-------EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp GGGHHHH-HHHHHHHS-------CCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred hHHHHHH-HHHHHHhC-------CCCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 4567643 44455432 2346999999999999988888764 77889999998876544332 4567
Q ss_pred cEEEECcHHHHHHHHccCCCCCCCcceEEEeC
Q 007481 121 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 152 (602)
Q Consensus 121 ~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlDE 152 (602)
.|+|+|.- + ...+++..+++||.-+
T Consensus 83 ~vLvaT~~-----~--~~Gldi~~~~~Vi~~d 107 (172)
T 1t5i_A 83 RILVATNL-----F--GRGMDIERVNIAFNYD 107 (172)
T ss_dssp SEEEESSC-----C--STTCCGGGCSEEEESS
T ss_pred cEEEECCc-----h--hcCcchhhCCEEEEEC
Confidence 99999921 1 1356677778877644
No 192
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=87.08 E-value=1.5 Score=43.61 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCchHHHHH
Q 007481 35 GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~ 52 (602)
++-+++.+|+|+|||+..
T Consensus 105 g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp SSEEEEEESTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 445778999999999753
No 193
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=86.99 E-value=0.37 Score=46.02 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCchHHHHH
Q 007481 35 GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~ 52 (602)
|.-+++.|++|+|||...
T Consensus 30 G~l~~i~G~pG~GKT~l~ 47 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CeEEEEEeCCCCCHHHHH
Confidence 356789999999999643
No 194
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=86.95 E-value=2.2 Score=43.09 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=33.8
Q ss_pred cceEEEeCccccc-cCCcHHHHHHHHHhCCCCcceeeeeccCChhHHHHHHHh
Q 007481 145 LAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLS 196 (602)
Q Consensus 145 l~llVlDEah~l~-~~gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~~~~ 196 (602)
.+++++|.+.+.. .......+..+...+.+...++.+.++...+..+.+..+
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 4578899887654 233455666666666666677788887776666655443
No 195
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=86.29 E-value=0.92 Score=49.36 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=18.4
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLL 61 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~ 61 (602)
|..+++.+|+|+|||.. +-++...+
T Consensus 108 g~~vll~Gp~GtGKTtl--ar~ia~~l 132 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSL--AKSIAKSL 132 (543)
T ss_dssp SCEEEEESSSSSSHHHH--HHHHHHHH
T ss_pred CCEEEEECCCCCCHHHH--HHHHHHhc
Confidence 67899999999999974 33444443
No 196
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=85.94 E-value=4.6 Score=44.39 Aligned_cols=30 Identities=23% Similarity=0.227 Sum_probs=21.9
Q ss_pred HHHhcCCCEEEEcCCCchHHHHHHHHHHHHHH
Q 007481 30 PLALTGRDICGSAITGSGKTAAFALPTLERLL 61 (602)
Q Consensus 30 ~~~l~g~dvii~a~TGSGKT~a~~l~il~~l~ 61 (602)
..+..|..+++.+|+|+|||.. +-++..++
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtl--ar~ia~~l 84 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSML--GQAMAELL 84 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHH--HHHHHHTS
T ss_pred ccccCCCEEEEEeCCCCCHHHH--HHHHhccC
Confidence 3444689999999999999974 34444444
No 197
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=85.82 E-value=1.3 Score=51.07 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=17.9
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
..++++.||+|+|||..+ -.+...+
T Consensus 191 ~~~vlL~G~pG~GKT~la-~~la~~l 215 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIV-EGLAQRI 215 (854)
T ss_dssp CCCCEEEECTTSCHHHHH-HHHHHHH
T ss_pred CCceEEEcCCCCCHHHHH-HHHHHHH
Confidence 358999999999999753 3333343
No 198
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=85.53 E-value=0.56 Score=40.99 Aligned_cols=20 Identities=15% Similarity=0.009 Sum_probs=16.9
Q ss_pred HhcCCCEEEEcCCCchHHHH
Q 007481 32 ALTGRDICGSAITGSGKTAA 51 (602)
Q Consensus 32 ~l~g~dvii~a~TGSGKT~a 51 (602)
+-.+.++++.||+|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 34578999999999999974
No 199
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=85.52 E-value=1.8 Score=43.50 Aligned_cols=63 Identities=14% Similarity=0.026 Sum_probs=33.0
Q ss_pred HHHHHhc-----CCCEEEEcCCCchHHHHHHHHHHHHHHcCC-CCCCCcEEEEEcChHHH-HHHHHHHHHH
Q 007481 28 CIPLALT-----GRDICGSAITGSGKTAAFALPTLERLLYRP-KRIPAIRVLILTPTREL-AVQVHSMIEK 91 (602)
Q Consensus 28 ~i~~~l~-----g~dvii~a~TGSGKT~a~~l~il~~l~~~~-~~~~~~~vLiL~Ptr~L-a~Q~~~~~~~ 91 (602)
.+..++. |.-+++.||+|+|||..+ +.+........ ....+.+++|+.....+ ..++.+.+..
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la-~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLC-HQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHH-HHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHH-HHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455554 356779999999999754 33333322110 00113467887655322 3344444443
No 200
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.24 E-value=0.87 Score=56.61 Aligned_cols=46 Identities=17% Similarity=0.137 Sum_probs=31.2
Q ss_pred HHHHhc------CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHH
Q 007481 29 IPLALT------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 80 (602)
Q Consensus 29 i~~~l~------g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~ 80 (602)
+..++. ++++++.+|+|+|||..+. .+...... .+.+++|+.....
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~-ala~ea~~-----~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTL-QVIAAAQR-----EGKTCAFIDAEHA 1466 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHH-HHHHHHHT-----TTCCEEEECTTSC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHH-HHHHHHHH-----cCCcEEEEEcccc
Confidence 667776 5889999999999997653 33333333 2345788876643
No 201
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=85.06 E-value=2.3 Score=40.05 Aligned_cols=71 Identities=13% Similarity=0.192 Sum_probs=52.9
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhc-----CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc------ccccCcC
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------ARGLDII 310 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~~-----g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~------~~GlDip 310 (602)
.+.++||.++++..+..+...+... ++.+..++|+.+..++...+ ...+|+|+|.-- ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 4568999999999999888877654 67888999999877655443 357899999531 2345677
Q ss_pred CccEEEE
Q 007481 311 GVQTVIN 317 (602)
Q Consensus 311 ~v~~VI~ 317 (602)
.+++||.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 7877774
No 202
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=84.68 E-value=3.4 Score=46.89 Aligned_cols=16 Identities=38% Similarity=0.364 Sum_probs=14.5
Q ss_pred CCEEEEcCCCchHHHH
Q 007481 36 RDICGSAITGSGKTAA 51 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a 51 (602)
+.+++.||+|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6799999999999975
No 203
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=84.06 E-value=2.9 Score=47.32 Aligned_cols=18 Identities=28% Similarity=0.158 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchHHHHH
Q 007481 35 GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~ 52 (602)
+.++++.||+|+|||..+
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 468999999999999753
No 204
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=83.68 E-value=1.8 Score=39.59 Aligned_cols=90 Identities=19% Similarity=0.191 Sum_probs=53.0
Q ss_pred CCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHH----HHcC
Q 007481 43 ITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET----ALRS 118 (602)
Q Consensus 43 ~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~----~l~~ 118 (602)
...+.|... ++-++.... .+.++||.|+++.-+..++..+... ++.+..++|+.+...... ...+
T Consensus 27 v~~~~K~~~-L~~ll~~~~------~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g 95 (185)
T 2jgn_A 27 VEESDKRSF-LLDLLNATG------KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSG 95 (185)
T ss_dssp CCGGGHHHH-HHHHHHHC-------CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHT
T ss_pred eCcHHHHHH-HHHHHHhcC------CCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 345677653 444554421 2346999999999999888888763 778899999876543322 2245
Q ss_pred CCcEEEECcHHHHHHHHccCCCCCCCcceEEE
Q 007481 119 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLIL 150 (602)
Q Consensus 119 ~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVl 150 (602)
...|+|+|. .+. ..+++..+++||.
T Consensus 96 ~~~vLvaT~-----~~~--~Gldi~~~~~VI~ 120 (185)
T 2jgn_A 96 KSPILVATA-----VAA--RGLDISNVKHVIN 120 (185)
T ss_dssp SSSEEEEEC-------------CCCSBSEEEE
T ss_pred CCeEEEEcC-----hhh--cCCCcccCCEEEE
Confidence 678999992 222 2567777887776
No 205
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=83.63 E-value=1.4 Score=46.23 Aligned_cols=36 Identities=22% Similarity=0.220 Sum_probs=24.4
Q ss_pred HHHCCCCCCcHHHHHHHHHHhc--CCCEEEEcCCCchHHHH
Q 007481 13 CEALGYSKPTPIQAACIPLALT--GRDICGSAITGSGKTAA 51 (602)
Q Consensus 13 l~~~g~~~pt~~Q~~~i~~~l~--g~dvii~a~TGSGKT~a 51 (602)
|.++||. +-+..++..++. |.-+++.||||||||+.
T Consensus 146 l~~Lg~~---~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 146 LHSLGMT---AHNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp GGGSCCC---HHHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHcCCC---HHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 4556653 345566665554 34577999999999974
No 206
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=83.62 E-value=3.3 Score=39.37 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=53.5
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC-----ccc-cccCcCC
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VAA-RGLDIIG 311 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~----~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~-----~~~-~GlDip~ 311 (602)
.+.++||.++++..+..+...+.. .++.+..++|+.+.......+. ...+|+|+|. .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE----RGVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCCccc
Confidence 356799999999998888666654 4889999999998877655544 2578999995 222 2357788
Q ss_pred ccEEEE
Q 007481 312 VQTVIN 317 (602)
Q Consensus 312 v~~VI~ 317 (602)
+.+||.
T Consensus 177 ~~~lVi 182 (242)
T 3fe2_A 177 TTYLVL 182 (242)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 888874
No 207
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=83.54 E-value=1.7 Score=49.65 Aligned_cols=17 Identities=35% Similarity=0.311 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchHHHH
Q 007481 35 GRDICGSAITGSGKTAA 51 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a 51 (602)
++.+++.||+|+|||+.
T Consensus 238 ~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCEEEECSCTTSSHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 57899999999999974
No 208
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=83.44 E-value=11 Score=39.26 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=25.2
Q ss_pred CcceEEEeCccccccC-CcHHHHHHHHHhCCCCcceeeeeccCChhHHHHH
Q 007481 144 DLAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELI 193 (602)
Q Consensus 144 ~l~llVlDEah~l~~~-gf~~~i~~i~~~~~~~~q~il~SAT~~~~~~~l~ 193 (602)
.++++|||=+-++... .....+..+...+.+..-++.+.|+...+....+
T Consensus 180 ~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a 230 (425)
T 2ffh_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA 230 (425)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHH
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHH
Confidence 3578999977654321 1223333444444444445556665444444333
No 209
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=83.27 E-value=2.6 Score=42.16 Aligned_cols=49 Identities=16% Similarity=-0.063 Sum_probs=29.1
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 90 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~ 90 (602)
|.-+++.|++|+|||.. ++-+...+... +.+++|++.- +-..|+...+.
T Consensus 68 G~l~li~G~pG~GKTtl-~l~ia~~~a~~-----g~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAF-ALKQAKNMSDN-----DDVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp TCEEEEECCTTSSHHHH-HHHHHHHHHTT-----TCEEEEEESS-SCHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHH-HHHHHHHHHHc-----CCeEEEEECC-CCHHHHHHHHH
Confidence 45688999999999964 44444444332 2357887643 23344444443
No 210
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=83.14 E-value=5 Score=41.22 Aligned_cols=72 Identities=21% Similarity=0.271 Sum_probs=54.6
Q ss_pred CCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHH----cCCCcEEEECcHHHHHHHHccCCCCCC
Q 007481 68 PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLD 143 (602)
Q Consensus 68 ~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l----~~~~~IvI~Tp~~L~~~l~~~~~~~l~ 143 (602)
.+.++||.|+++..+..+++.+... ++.+..++|+.+.......+ .+..+|+|+|. .+.. .+++.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~--Gidip 343 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAAR--GLDIS 343 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHT--TSCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhc--CCCcc
Confidence 3457999999999999998888763 77889999998865544332 45679999993 3333 67888
Q ss_pred CcceEEE
Q 007481 144 DLAVLIL 150 (602)
Q Consensus 144 ~l~llVl 150 (602)
++++||.
T Consensus 344 ~v~~Vi~ 350 (417)
T 2i4i_A 344 NVKHVIN 350 (417)
T ss_dssp CEEEEEE
T ss_pred cCCEEEE
Confidence 8888875
No 211
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=82.95 E-value=4.4 Score=37.12 Aligned_cols=72 Identities=15% Similarity=0.134 Sum_probs=51.0
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhc-----CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc-----ccc-ccCcC
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----AAR-GLDII 310 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~~-----g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~-----~~~-GlDip 310 (602)
.+.++||.++++..+..+...+... ++.+..++|+.+..+....+ .+..+|+|+|.- +.. .+++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL----DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhc----CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 3458999999999998887777543 67888899998876543322 357789999952 222 34667
Q ss_pred CccEEEE
Q 007481 311 GVQTVIN 317 (602)
Q Consensus 311 ~v~~VI~ 317 (602)
++++||.
T Consensus 146 ~~~~lVi 152 (206)
T 1vec_A 146 HVQMIVL 152 (206)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7888774
No 212
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=82.74 E-value=1.4 Score=40.37 Aligned_cols=60 Identities=12% Similarity=0.014 Sum_probs=42.3
Q ss_pred CcHHHHHHHHHHhcCC--CEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHH
Q 007481 21 PTPIQAACIPLALTGR--DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 85 (602)
Q Consensus 21 pt~~Q~~~i~~~l~g~--dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~ 85 (602)
..+-|..++..++... -.++.++-|++||...+..++..... .|.+|.+|+|+..-....
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~-----~Gr~V~vLAp~~~s~~~l 96 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE-----QGREVQIIAADRRSQMNM 96 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH-----TTCCEEEECSTTHHHHHH
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh-----cCeEEEEEcCchHHHHHH
Confidence 4577999999998743 45589999999998754333332222 345699999998776544
No 213
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=82.54 E-value=7.3 Score=38.76 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=12.6
Q ss_pred CEEEEcCCCchHHHH
Q 007481 37 DICGSAITGSGKTAA 51 (602)
Q Consensus 37 dvii~a~TGSGKT~a 51 (602)
-+++.+|+|+|||+.
T Consensus 106 vi~ivG~~GsGKTTl 120 (306)
T 1vma_A 106 VIMVVGVNGTGKTTS 120 (306)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEEcCCCChHHHH
Confidence 356899999999975
No 214
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=82.30 E-value=1.4 Score=47.46 Aligned_cols=40 Identities=23% Similarity=0.009 Sum_probs=27.0
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHh-cCCCEEEEcCCCchHHHH
Q 007481 10 LRACEALGYSKPTPIQAACIPLAL-TGRDICGSAITGSGKTAA 51 (602)
Q Consensus 10 l~~l~~~g~~~pt~~Q~~~i~~~l-~g~dvii~a~TGSGKT~a 51 (602)
+..|..+|.- ++.+..-+...+ .|..+++.||||||||+.
T Consensus 236 ~~~l~~~G~~--~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 236 PIDLIEKGTV--PSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHTTSS--CHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhhHHhcCCC--CHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 3445566632 344555555444 578899999999999974
No 215
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=81.40 E-value=3.6 Score=41.13 Aligned_cols=25 Identities=24% Similarity=0.153 Sum_probs=17.8
Q ss_pred HHHHHhc-----CCCEEEEcCCCchHHHHH
Q 007481 28 CIPLALT-----GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 28 ~i~~~l~-----g~dvii~a~TGSGKT~a~ 52 (602)
.+..++. |.-+++.|++|+|||...
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 3455554 245779999999999754
No 216
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=81.40 E-value=8.1 Score=38.16 Aligned_cols=16 Identities=31% Similarity=0.291 Sum_probs=12.8
Q ss_pred CCEEEEcCCCchHHHH
Q 007481 36 RDICGSAITGSGKTAA 51 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a 51 (602)
+-+.+.+++|+|||..
T Consensus 99 ~~i~i~g~~G~GKTT~ 114 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTT 114 (295)
T ss_dssp EEEEEECCTTTTHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3455889999999975
No 217
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=81.30 E-value=6.5 Score=39.00 Aligned_cols=89 Identities=13% Similarity=0.153 Sum_probs=60.4
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHH----cCC
Q 007481 44 TGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSM 119 (602)
Q Consensus 44 TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l----~~~ 119 (602)
+...|..+ +.-++... .+.++||.|+++.-+..+++.+.. .++.+..++|+.+...+...+ .+.
T Consensus 11 ~~~~K~~~-L~~ll~~~-------~~~~~LVF~~t~~~~~~l~~~L~~----~g~~~~~lhg~l~~~~r~~~~~~f~~g~ 78 (300)
T 3i32_A 11 PVRGRLEV-LSDLLYVA-------SPDRAMVFTRTKAETEEIAQGLLR----LGHPAQALHGDMSQGERERVMGAFRQGE 78 (300)
T ss_dssp CSSSHHHH-HHHHHHHH-------CCSSEEEECSSHHHHHHHHHHHHT----TTCCEEEECSCCCTHHHHHHHHHHHHTS
T ss_pred CHHHHHHH-HHHHHHhc-------CCCCEEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhcCC
Confidence 34567654 34444332 133699999999998888777764 378899999998876654443 456
Q ss_pred CcEEEECcHHHHHHHHccCCCCCCCcceEEEe
Q 007481 120 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 151 (602)
Q Consensus 120 ~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVlD 151 (602)
.+|+|+|. .+. ..+++..+++||.=
T Consensus 79 ~~vLVaT~-----va~--~Gidi~~v~~VI~~ 103 (300)
T 3i32_A 79 VRVLVATD-----VAA--RGLDIPQVDLVVHY 103 (300)
T ss_dssp CCEEEECS-----TTT--CSTTCCCCSEEEES
T ss_pred ceEEEEec-----hhh--cCccccceeEEEEc
Confidence 79999992 222 35677888888753
No 218
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=81.28 E-value=11 Score=40.62 Aligned_cols=76 Identities=13% Similarity=0.222 Sum_probs=56.6
Q ss_pred CcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHH----cCCCcEEEECcHHHHHHHHccCCCCCCC
Q 007481 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 144 (602)
Q Consensus 69 ~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l----~~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 144 (602)
+.++||.|+++.-|..+++.+..... .++.+..++|+.+.......+ .+..+|+|||. .+. ..+++.+
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~--~GiDip~ 410 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA--RGMDFPN 410 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT--SSCCCTT
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhh--cCCCccc
Confidence 45799999999999999998887532 367889999998876544332 46689999993 222 3678888
Q ss_pred cceEEEeC
Q 007481 145 LAVLILDE 152 (602)
Q Consensus 145 l~llVlDE 152 (602)
+++||.-.
T Consensus 411 v~~VI~~~ 418 (563)
T 3i5x_A 411 VHEVLQIG 418 (563)
T ss_dssp CCEEEEES
T ss_pred CCEEEEEC
Confidence 88887654
No 219
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=80.91 E-value=4.7 Score=41.82 Aligned_cols=44 Identities=9% Similarity=-0.126 Sum_probs=23.8
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcCh
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 78 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Pt 78 (602)
|.-++|.+|+|+|||......++..+.....+..+..++++...
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 35677999999999975432222222211001123457777543
No 220
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=80.76 E-value=1.2 Score=45.15 Aligned_cols=48 Identities=19% Similarity=0.074 Sum_probs=28.6
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 89 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~ 89 (602)
|.-+++.|++|+|||.. ++-+...+... +..|+|++.- .-..|+...+
T Consensus 46 G~LiiIaG~pG~GKTt~-al~ia~~~a~~-----g~~Vl~fSlE-ms~~ql~~Rl 93 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSL-MMNMVLSALND-----DRGVAVFSLE-MSAEQLALRA 93 (338)
T ss_dssp TCEEEEEECTTSCHHHH-HHHHHHHHHHT-----TCEEEEEESS-SCHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHH-HHHHHHHHHHc-----CCeEEEEeCC-CCHHHHHHHH
Confidence 45677999999999964 44444444432 3357777543 2234444443
No 221
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=80.59 E-value=3.3 Score=39.20 Aligned_cols=73 Identities=8% Similarity=0.140 Sum_probs=45.2
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhc----CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC-----cccc-ccCcCC
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGLA----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VAAR-GLDIIG 311 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~~----g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~-----~~~~-GlDip~ 311 (602)
.+.++||.++++..+..+...+... ++.+..++|+.+... ....+..+..+|+|+|. .+.. .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4568999999999999888777654 567777888765433 23445567789999993 2323 356677
Q ss_pred ccEEEE
Q 007481 312 VQTVIN 317 (602)
Q Consensus 312 v~~VI~ 317 (602)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 888774
No 222
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=80.34 E-value=0.87 Score=47.88 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=32.6
Q ss_pred cCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHH
Q 007481 34 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 83 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~ 83 (602)
...++++.|+||||||..+ .+++..++.. +..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~-----g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLR-----GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHT-----TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHC-----CCcEEEEeCCCchhH
Confidence 4579999999999999863 4455555443 346899999988854
No 223
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=80.22 E-value=3.2 Score=38.89 Aligned_cols=72 Identities=15% Similarity=0.242 Sum_probs=48.7
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhc---CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc------cccccCcCCc
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGLA---ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV------AARGLDIIGV 312 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~~---g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~------~~~GlDip~v 312 (602)
.+.++||.++++..+..+...+... ++.+..++|+.+..++...+ . ...+|+|+|.- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4568999999999999998888764 67888889887765544333 2 35899999942 2234667788
Q ss_pred cEEEE
Q 007481 313 QTVIN 317 (602)
Q Consensus 313 ~~VI~ 317 (602)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 88774
No 224
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=80.18 E-value=6 Score=40.13 Aligned_cols=72 Identities=17% Similarity=0.277 Sum_probs=54.5
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhhc-----CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc------ccccCcCC
Q 007481 243 TSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------ARGLDIIG 311 (602)
Q Consensus 243 ~~kvIIF~~s~~~a~~l~~~L~~~-----g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~------~~GlDip~ 311 (602)
+.++||.|+++..+..+...+... ++.+..++|+.+..+.... +..+..+|+|+|.-. ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999999999887777654 7889999999987665443 445778999999421 23456778
Q ss_pred ccEEEE
Q 007481 312 VQTVIN 317 (602)
Q Consensus 312 v~~VI~ 317 (602)
+++||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 888884
No 225
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=80.14 E-value=0.97 Score=44.11 Aligned_cols=20 Identities=30% Similarity=0.185 Sum_probs=16.2
Q ss_pred HhcCCCEEEEcCCCchHHHH
Q 007481 32 ALTGRDICGSAITGSGKTAA 51 (602)
Q Consensus 32 ~l~g~dvii~a~TGSGKT~a 51 (602)
+..|.-+++.||||||||+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 34566788999999999974
No 226
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=79.58 E-value=6.8 Score=36.80 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=49.5
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhc----CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc-----ccc--ccCcC
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGLA----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----AAR--GLDII 310 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~~----g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~-----~~~--GlDip 310 (602)
.+.++||.++++..+..+...+... ++.+..++|+.+.......+ +..+|+|+|.- +.. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 4568999999999999888777654 47888899987765443333 46799999942 112 35667
Q ss_pred CccEEEE
Q 007481 311 GVQTVIN 317 (602)
Q Consensus 311 ~v~~VI~ 317 (602)
.+++||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 7877774
No 227
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=78.60 E-value=12 Score=37.95 Aligned_cols=73 Identities=16% Similarity=0.270 Sum_probs=54.7
Q ss_pred CcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHH----cCCCcEEEECcHHHHHHHHccCCCCCCC
Q 007481 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 144 (602)
Q Consensus 69 ~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l----~~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 144 (602)
+.++||.|+++.-+..+++.+... ++.+..++|+.+.......+ .+..+|+|+|. .+. ..+++.+
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip~ 334 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA--RGIDVEQ 334 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT--SSCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccc--cCCCccC
Confidence 347999999999999998888764 67789999998876554333 45678999993 222 3678888
Q ss_pred cceEEEeC
Q 007481 145 LAVLILDE 152 (602)
Q Consensus 145 l~llVlDE 152 (602)
+++||.-.
T Consensus 335 ~~~Vi~~~ 342 (412)
T 3fht_A 335 VSVVINFD 342 (412)
T ss_dssp EEEEEESS
T ss_pred CCEEEEEC
Confidence 88887533
No 228
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=78.41 E-value=17 Score=39.36 Aligned_cols=77 Identities=13% Similarity=0.220 Sum_probs=57.1
Q ss_pred CcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHH----cCCCcEEEECcHHHHHHHHccCCCCCCC
Q 007481 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 144 (602)
Q Consensus 69 ~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l----~~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 144 (602)
+.++||.|+|+.-|..+++.+..... .++.+..++|+.+.......+ .+..+|+|||. .+. ..+++.+
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~--~GiDip~ 359 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA--RGMDFPN 359 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT--SSCCCTT
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhh--cCCCccc
Confidence 45799999999999999998887532 367889999998876543332 46679999993 222 3678888
Q ss_pred cceEEEeCc
Q 007481 145 LAVLILDEA 153 (602)
Q Consensus 145 l~llVlDEa 153 (602)
+++||.-..
T Consensus 360 v~~VI~~~~ 368 (579)
T 3sqw_A 360 VHEVLQIGV 368 (579)
T ss_dssp CCEEEEESC
T ss_pred CCEEEEcCC
Confidence 888886553
No 229
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=77.53 E-value=4.7 Score=43.01 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=20.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEE
Q 007481 37 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 75 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL 75 (602)
-+++.|++|||||+. +..+..++... +.++++.
T Consensus 295 VI~LVGpNGSGKTTL--l~~LAgll~~~----~G~V~l~ 327 (503)
T 2yhs_A 295 VILMVGVNGVGKTTT--IGKLARQFEQQ----GKSVMLA 327 (503)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHHHT----TCCEEEE
T ss_pred EEEEECCCcccHHHH--HHHHHHHhhhc----CCeEEEe
Confidence 466899999999974 44444444321 2246665
No 230
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=77.30 E-value=3.4 Score=46.96 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
+.+++.+|+|+|||+.+
T Consensus 512 ~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp SCCEEESSTTSSHHHHH
T ss_pred ceEEEecCCCCCchHHH
Confidence 67999999999999753
No 231
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=77.19 E-value=2.6 Score=44.40 Aligned_cols=68 Identities=15% Similarity=0.139 Sum_probs=46.3
Q ss_pred cEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEE
Q 007481 70 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 149 (602)
Q Consensus 70 ~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llV 149 (602)
.++||.||++.-+..+++.+... ++.+..++|............+..+|+|||. .+. ..+++. +++||
T Consensus 178 ~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~-----v~e--~GiDip-v~~VI 245 (440)
T 1yks_A 178 RPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD-----IAE--MGANLC-VERVL 245 (440)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS-----STT--CCTTCC-CSEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC-----hhh--eeeccC-ceEEE
Confidence 46999999999999998888764 6788999996554444444456689999992 222 246677 77766
No 232
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=77.16 E-value=3.6 Score=38.37 Aligned_cols=72 Identities=13% Similarity=0.180 Sum_probs=45.0
Q ss_pred cCCCeEEEEeCcHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc------ccccCcC
Q 007481 241 TFTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------ARGLDII 310 (602)
Q Consensus 241 ~~~~kvIIF~~s~~~a~~l~~~L~~----~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~------~~GlDip 310 (602)
..+.++||.++++..+..+...+.. .++.+..++|+.+..+....+ ...+|+|+|.-. ...+++.
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~~~~~~~~~~ 154 (224)
T 1qde_A 80 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-----RDAQIVVGTPGRVFDNIQRRRFRTD 154 (224)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C-----TTCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC-----CCCCEEEECHHHHHHHHHhCCcchh
Confidence 3456899999999998888776654 367888899987765543322 237899999521 2345667
Q ss_pred CccEEEE
Q 007481 311 GVQTVIN 317 (602)
Q Consensus 311 ~v~~VI~ 317 (602)
.+++||.
T Consensus 155 ~~~~iVi 161 (224)
T 1qde_A 155 KIKMFIL 161 (224)
T ss_dssp TCCEEEE
T ss_pred hCcEEEE
Confidence 7888774
No 233
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=77.01 E-value=6.5 Score=35.90 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=52.0
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc-----cc-cccCcCCcc
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----AA-RGLDIIGVQ 313 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~~--g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~-----~~-~GlDip~v~ 313 (602)
.+.++||.++++..+..+...+... ++.+..++|+.+.......+. ...+|+|+|.- +. ..+++..++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3568999999999999998888766 467888899887655443332 35789999952 22 245677788
Q ss_pred EEEE
Q 007481 314 TVIN 317 (602)
Q Consensus 314 ~VI~ 317 (602)
+||.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8774
No 234
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=76.47 E-value=4.6 Score=39.36 Aligned_cols=43 Identities=26% Similarity=0.180 Sum_probs=31.2
Q ss_pred HHHHHHHHHCCCCCCcHHHHHH-HHHHhcCC-----CEEEEcCCCchHHHHH
Q 007481 7 RPLLRACEALGYSKPTPIQAAC-IPLALTGR-----DICGSAITGSGKTAAF 52 (602)
Q Consensus 7 ~~ll~~l~~~g~~~pt~~Q~~~-i~~~l~g~-----dvii~a~TGSGKT~a~ 52 (602)
.++.+-|.-.||. |++-.. +..++.++ .+++.||+|+|||..+
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 4678888888877 555433 55666653 4889999999999764
No 235
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=76.18 E-value=40 Score=35.91 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=21.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcC
Q 007481 37 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 77 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~P 77 (602)
.+++++++|+|||+.+ .-+...+... +.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~-~kLA~~l~~~-----G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTC-SKLAYYYQRK-----GWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHHHHHT-----TCCEEEEEE
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHHhC-----CCeEEEEec
Confidence 4668999999999764 3333333322 224666654
No 236
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=76.04 E-value=6.6 Score=39.22 Aligned_cols=73 Identities=22% Similarity=0.348 Sum_probs=53.1
Q ss_pred CcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHH----cCCCcEEEECcHHHHHHHHccCCCCCCC
Q 007481 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 144 (602)
Q Consensus 69 ~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l----~~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 144 (602)
+.++||.|+++.-+..+++.+... ++.+..++|+.+.......+ .+..+|+|+|. .+.. .+++.+
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~--Gid~~~ 306 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSR--GIDVND 306 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHH--HCCCSC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc--CCCccc
Confidence 446999999999999998888764 67889999998866544332 45678999993 2222 466777
Q ss_pred cceEEEeC
Q 007481 145 LAVLILDE 152 (602)
Q Consensus 145 l~llVlDE 152 (602)
+++||.-.
T Consensus 307 ~~~Vi~~~ 314 (367)
T 1hv8_A 307 LNCVINYH 314 (367)
T ss_dssp CSEEEESS
T ss_pred CCEEEEec
Confidence 88877543
No 237
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=75.07 E-value=5.1 Score=44.56 Aligned_cols=77 Identities=19% Similarity=0.323 Sum_probs=58.3
Q ss_pred CcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHH----cCCCcEEEECcHHHHHHHHccCCCCCCC
Q 007481 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 144 (602)
Q Consensus 69 ~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l----~~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 144 (602)
+.++||.|+|+..+..+++.+... ++.+..++|+.+.......+ .+..+|+|||. .+. ..+++.+
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~--~GlDip~ 513 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLR--EGLDIPE 513 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCS--TTCCCTT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhh--CCcccCC
Confidence 347999999999999888888764 77888899988765544332 35679999993 222 3578888
Q ss_pred cceEEEeCcccc
Q 007481 145 LAVLILDEADRL 156 (602)
Q Consensus 145 l~llVlDEah~l 156 (602)
++++|+-+++..
T Consensus 514 v~lVi~~d~d~~ 525 (661)
T 2d7d_A 514 VSLVAILDADKE 525 (661)
T ss_dssp EEEEEETTTTCC
T ss_pred CCEEEEeCcccc
Confidence 999999998763
No 238
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=74.79 E-value=7.4 Score=44.10 Aligned_cols=75 Identities=13% Similarity=0.164 Sum_probs=55.8
Q ss_pred CcEEEEEcChHHHHHHHHHHHHHHh-------hcCCceEEEEECCCCHHHHHHHHcC---------CCcEEEECcHHHHH
Q 007481 69 AIRVLILTPTRELAVQVHSMIEKIA-------QFTDIRCCLVVGGLSTKMQETALRS---------MPDIVVATPGRMID 132 (602)
Q Consensus 69 ~~~vLiL~Ptr~La~Q~~~~~~~l~-------~~~~i~v~~~~g~~~~~~~~~~l~~---------~~~IvI~Tp~~L~~ 132 (602)
+.++||.||++.-+..+++.+.... ...++.+..++|+.+...+...+.. ...|+|||.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 3479999999999999988887532 2257889999999998877666543 347999992
Q ss_pred HHHccCCCCCCCcceEEE
Q 007481 133 HLRNSMSVDLDDLAVLIL 150 (602)
Q Consensus 133 ~l~~~~~~~l~~l~llVl 150 (602)
.+.. ++++..+.+||-
T Consensus 378 iae~--GidIp~v~~VId 393 (773)
T 2xau_A 378 IAET--SLTIDGIVYVVD 393 (773)
T ss_dssp HHHH--TCCCTTEEEEEE
T ss_pred HHHh--CcCcCCeEEEEe
Confidence 2333 577788877664
No 239
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=74.69 E-value=1.9 Score=43.23 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=19.3
Q ss_pred HHHHHhcCCCEEEEcCCCchHHHH
Q 007481 28 CIPLALTGRDICGSAITGSGKTAA 51 (602)
Q Consensus 28 ~i~~~l~g~dvii~a~TGSGKT~a 51 (602)
+...+..+.++++.||+|+|||..
T Consensus 39 l~~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 39 LLIGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHHHHTCCEEEESCCCHHHHHH
T ss_pred HHHHHHcCCeEEEECCCCCcHHHH
Confidence 334455689999999999999974
No 240
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=74.49 E-value=25 Score=35.31 Aligned_cols=76 Identities=12% Similarity=0.222 Sum_probs=56.9
Q ss_pred CcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHH----cCCCcEEEECcHHHHHHHHccCCCCCCC
Q 007481 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 144 (602)
Q Consensus 69 ~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l----~~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 144 (602)
+.++||.|+++.-+..+++.+... ++.+..++|+.+.......+ .+..+|+|+|. .+. ..+++.+
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip~ 311 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLA--RGIDIPT 311 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGS--SSCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh--cCCCccc
Confidence 457999999999999988888764 67789999998866544333 45678999993 222 3678888
Q ss_pred cceEEEeCccc
Q 007481 145 LAVLILDEADR 155 (602)
Q Consensus 145 l~llVlDEah~ 155 (602)
+++||.-....
T Consensus 312 ~~~Vi~~~~p~ 322 (395)
T 3pey_A 312 VSMVVNYDLPT 322 (395)
T ss_dssp EEEEEESSCCB
T ss_pred CCEEEEcCCCC
Confidence 99988766543
No 241
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=74.49 E-value=26 Score=36.60 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=13.0
Q ss_pred CEEEEcCCCchHHHHH
Q 007481 37 DICGSAITGSGKTAAF 52 (602)
Q Consensus 37 dvii~a~TGSGKT~a~ 52 (602)
.+++++++|+|||+..
T Consensus 102 vI~ivG~~GvGKTT~a 117 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSV 117 (433)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999764
No 242
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=74.31 E-value=1.7 Score=39.36 Aligned_cols=19 Identities=11% Similarity=0.142 Sum_probs=15.9
Q ss_pred hcCCCEEEEcCCCchHHHH
Q 007481 33 LTGRDICGSAITGSGKTAA 51 (602)
Q Consensus 33 l~g~dvii~a~TGSGKT~a 51 (602)
+.|+-+++.||+|||||..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3567788999999999974
No 243
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=74.01 E-value=2.2 Score=39.47 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=17.6
Q ss_pred cCCCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 34 TGRDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
.|+-+++.||+|||||.. +-++..+
T Consensus 3 ~g~~i~lvGpsGaGKSTL--l~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL--LKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHH--HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHhh
Confidence 467789999999999974 4444443
No 244
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=73.23 E-value=7.8 Score=39.49 Aligned_cols=72 Identities=11% Similarity=0.196 Sum_probs=53.3
Q ss_pred CcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHH----cCCCcEEEECcHHHHHHHHccCCCCCCC
Q 007481 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 144 (602)
Q Consensus 69 ~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l----~~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 144 (602)
..++||.|+++.-+..+++.+..+ ++.+..++|+.+.......+ .+..+|+|+|. .+. ..+++..
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~--~Gidip~ 326 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLT--RGIDIQA 326 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSS--SSCCCTT
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccc--cCCCccC
Confidence 347999999999999998888875 67788999998865543332 45678999992 111 3567888
Q ss_pred cceEEEe
Q 007481 145 LAVLILD 151 (602)
Q Consensus 145 l~llVlD 151 (602)
+++||.-
T Consensus 327 ~~~Vi~~ 333 (400)
T 1s2m_A 327 VNVVINF 333 (400)
T ss_dssp EEEEEES
T ss_pred CCEEEEe
Confidence 8887753
No 245
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=72.36 E-value=4.4 Score=43.43 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=23.1
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCchHHHH
Q 007481 22 TPIQAACIPLALTGRDICGSAITGSGKTAA 51 (602)
Q Consensus 22 t~~Q~~~i~~~l~g~dvii~a~TGSGKT~a 51 (602)
...=..++..+..+.++++.||+|+|||..
T Consensus 28 ~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 28 SHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 333445556667789999999999999974
No 246
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=72.20 E-value=9.8 Score=36.60 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=51.7
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC-----cc--ccccCcC
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VA--ARGLDII 310 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~----~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~-----~~--~~GlDip 310 (602)
.+.++||.++++..+..+...+.. .+..+..++|+.........+ ..+ .+|+|+|. .+ ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 356899999999999888777765 356778889988776544333 333 89999994 12 2246778
Q ss_pred CccEEEE
Q 007481 311 GVQTVIN 317 (602)
Q Consensus 311 ~v~~VI~ 317 (602)
.+.+||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 8888774
No 247
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=72.11 E-value=1.7 Score=39.29 Aligned_cols=18 Identities=28% Similarity=0.254 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCchHHHHH
Q 007481 35 GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~ 52 (602)
++.+++.|++|||||...
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 467889999999999853
No 248
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=71.99 E-value=4.7 Score=40.99 Aligned_cols=19 Identities=37% Similarity=0.228 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 007481 34 TGRDICGSAITGSGKTAAF 52 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a~ 52 (602)
...++++.||+|+|||..+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3578999999999999753
No 249
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=71.65 E-value=3.3 Score=38.73 Aligned_cols=30 Identities=30% Similarity=0.169 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCchHHHH
Q 007481 22 TPIQAACIPLALTGRDICGSAITGSGKTAA 51 (602)
Q Consensus 22 t~~Q~~~i~~~l~g~dvii~a~TGSGKT~a 51 (602)
+.-|..++..+-.|.-+.+.+|.|||||+.
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 455777888887888889999999999974
No 250
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=71.64 E-value=1.8 Score=38.85 Aligned_cols=17 Identities=24% Similarity=0.198 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCchHHHH
Q 007481 35 GRDICGSAITGSGKTAA 51 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a 51 (602)
+.-++++|++|||||.+
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45688999999999985
No 251
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=71.45 E-value=8.5 Score=39.38 Aligned_cols=71 Identities=11% Similarity=0.234 Sum_probs=53.1
Q ss_pred cEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHH----cCCCcEEEECcHHHHHHHHccCCCCCCCc
Q 007481 70 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDL 145 (602)
Q Consensus 70 ~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l----~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l 145 (602)
.++||.|+++.-+..+++.+... ++.+..++|+.+.......+ .+...|+|+|. .+. ..+++..+
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidi~~v 345 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWA--RGLDVPQV 345 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGS--SSCCCTTE
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh--CcCCcccC
Confidence 37999999999999888888763 67789999998865544332 45678999993 222 36788888
Q ss_pred ceEEEe
Q 007481 146 AVLILD 151 (602)
Q Consensus 146 ~llVlD 151 (602)
++||.-
T Consensus 346 ~~Vi~~ 351 (410)
T 2j0s_A 346 SLIINY 351 (410)
T ss_dssp EEEEES
T ss_pred CEEEEE
Confidence 888753
No 252
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=71.41 E-value=2.5 Score=43.28 Aligned_cols=25 Identities=36% Similarity=0.345 Sum_probs=19.3
Q ss_pred cCCCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 34 TGRDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
.|..+++.||||||||+. +-++..+
T Consensus 174 ~G~~i~ivG~sGsGKSTl--l~~l~~~ 198 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTL--MKALMQE 198 (361)
T ss_dssp TTCCEEEEESSSSCHHHH--HHHHHTT
T ss_pred cCCEEEEECCCCCCHHHH--HHHHHhc
Confidence 478999999999999974 4444443
No 253
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=71.34 E-value=7 Score=38.22 Aligned_cols=18 Identities=33% Similarity=0.292 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCchHHHHH
Q 007481 35 GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~ 52 (602)
..++++.||+|+|||..+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999753
No 254
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=71.00 E-value=4.4 Score=42.47 Aligned_cols=53 Identities=9% Similarity=0.047 Sum_probs=41.5
Q ss_pred cEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEEC
Q 007481 70 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVAT 126 (602)
Q Consensus 70 ~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~T 126 (602)
.++||+||++.-+..+++.+... ++.+..++|+...........+..+|+|||
T Consensus 172 ~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT 224 (431)
T 2v6i_A 172 GRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITT 224 (431)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEEC
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEEC
Confidence 46999999999999998888865 788899998754433333445678999999
No 255
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=70.80 E-value=2.9 Score=40.31 Aligned_cols=18 Identities=17% Similarity=0.178 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCchHHHH
Q 007481 34 TGRDICGSAITGSGKTAA 51 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a 51 (602)
.+.++++.||+|+|||..
T Consensus 28 ~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELI 45 (265)
T ss_dssp SCSCEEEECCTTSCHHHH
T ss_pred CCCCEEEECCCCCcHHHH
Confidence 467999999999999974
No 256
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=70.79 E-value=4.3 Score=37.79 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=48.5
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhc--------CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC-----cccc-cc
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGLA--------ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VAAR-GL 307 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~~--------g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~-----~~~~-Gl 307 (602)
.+.++||.++++..+..+...+... ++.+..++|+.+..+... .+ ....+|+|+|. .+.. .+
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~ 146 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRINDFIREQAL 146 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHHHHHTTCC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHHHHHcCCC
Confidence 3568999999999988887766543 577888888876543211 11 24678999994 2222 35
Q ss_pred CcCCccEEEE
Q 007481 308 DIIGVQTVIN 317 (602)
Q Consensus 308 Dip~v~~VI~ 317 (602)
++..+++||.
T Consensus 147 ~~~~~~~lVi 156 (219)
T 1q0u_A 147 DVHTAHILVV 156 (219)
T ss_dssp CGGGCCEEEE
T ss_pred CcCcceEEEE
Confidence 6677887774
No 257
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=70.75 E-value=7.6 Score=43.16 Aligned_cols=77 Identities=21% Similarity=0.266 Sum_probs=57.2
Q ss_pred CcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHH---H-cCCCcEEEECcHHHHHHHHccCCCCCCC
Q 007481 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA---L-RSMPDIVVATPGRMIDHLRNSMSVDLDD 144 (602)
Q Consensus 69 ~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~---l-~~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 144 (602)
+.++||.|+|+..+..+++.+... ++.+..++|+.+....... + .+..+|+|||. .+. ..+++..
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l~--~GlDip~ 507 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLR--EGLDIPE 507 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCC--TTCCCTT
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hhh--cCccCCC
Confidence 347999999999999888888764 6788888998876554433 2 35679999982 122 3577888
Q ss_pred cceEEEeCcccc
Q 007481 145 LAVLILDEADRL 156 (602)
Q Consensus 145 l~llVlDEah~l 156 (602)
++++|+=+++..
T Consensus 508 v~lVI~~d~d~~ 519 (664)
T 1c4o_A 508 VSLVAILDADKE 519 (664)
T ss_dssp EEEEEETTTTSC
T ss_pred CCEEEEeCCccc
Confidence 999988887653
No 258
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=70.72 E-value=5.9 Score=37.09 Aligned_cols=43 Identities=12% Similarity=0.055 Sum_probs=26.4
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHhcC----CCEEEEcCCCchHHHHH
Q 007481 8 PLLRACEALGYSKPTPIQAACIPLALTG----RDICGSAITGSGKTAAF 52 (602)
Q Consensus 8 ~ll~~l~~~g~~~pt~~Q~~~i~~~l~g----~dvii~a~TGSGKT~a~ 52 (602)
.|.+-|.-.|+. |..+ ...+..++.+ +.+++.+|+|+|||..+
T Consensus 29 ~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 29 PIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 445555444422 3344 4455556554 35889999999999754
No 259
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=70.70 E-value=1.8 Score=38.26 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=13.3
Q ss_pred CEEEEcCCCchHHHHH
Q 007481 37 DICGSAITGSGKTAAF 52 (602)
Q Consensus 37 dvii~a~TGSGKT~a~ 52 (602)
-++++|++|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3679999999999753
No 260
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=70.49 E-value=2.2 Score=43.15 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=14.2
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
+-++|.||||||||...
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45789999999999753
No 261
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=70.40 E-value=10 Score=39.43 Aligned_cols=68 Identities=16% Similarity=0.234 Sum_probs=52.2
Q ss_pred EEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHH----cCCCcEEEECcHHHHHHHHccCCCCCCCcce
Q 007481 72 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDLAV 147 (602)
Q Consensus 72 vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l----~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~l 147 (602)
+||.|+++.-|..+++.+... ++.+..++|+.+.......+ .+..+|+|||. .+. ..+++.++++
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~--rGlDi~~v~~ 371 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VAS--RGLDIKNIKH 371 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGT--SSCCCTTCCE
T ss_pred EEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhh--CCCCcccCCE
Confidence 999999999999988888763 77889999998876544333 45679999994 222 3678888888
Q ss_pred EEE
Q 007481 148 LIL 150 (602)
Q Consensus 148 lVl 150 (602)
||.
T Consensus 372 VI~ 374 (434)
T 2db3_A 372 VIN 374 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 262
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=70.23 E-value=2.4 Score=39.42 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=15.1
Q ss_pred cCCCEEEEcCCCchHHHH
Q 007481 34 TGRDICGSAITGSGKTAA 51 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a 51 (602)
.|+-+++.||+|||||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 356688999999999975
No 263
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=70.07 E-value=6 Score=49.35 Aligned_cols=46 Identities=13% Similarity=-0.011 Sum_probs=29.2
Q ss_pred cCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHH
Q 007481 34 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH 86 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~ 86 (602)
.|+++++.+|+|+|||..+..-+.+. ... +.+++|+. ..++..+++
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea-~k~-----Ge~~~Fit-~ee~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAA-QRE-----GKTCAFID-AEHALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH-HTT-----TCCEEEEC-TTSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHc-----CCeEEEEE-ccccHHHHH
Confidence 46889999999999997654434333 332 23467765 444545554
No 264
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=70.05 E-value=2.5 Score=38.87 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCchHHHH
Q 007481 34 TGRDICGSAITGSGKTAA 51 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a 51 (602)
.++.+++.|++|||||+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 467889999999999985
No 265
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=69.85 E-value=5.4 Score=49.00 Aligned_cols=91 Identities=14% Similarity=0.133 Sum_probs=52.7
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHH
Q 007481 36 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 115 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~ 115 (602)
+-+.+.+|.|||||..+ ++++...... +..++++.+-.+|.... ++++ ++++
T Consensus 1432 ~~iei~g~~~sGkttl~-~~~~a~~~~~-----g~~~~~i~~e~~~~~~~---~~~~----Gv~~--------------- 1483 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLT-LQVIAAAQRE-----GKTCAFIDAEHALDPIY---ARKL----GVDI--------------- 1483 (1706)
T ss_dssp SEEEEECSTTSSHHHHH-HHHHHHHHHT-----TCCEEEECTTSCCCHHH---HHHT----TCCG---------------
T ss_pred CEEEEEcCCCCCHHHHH-HHHHHHHHhc-----CCeEEEEecCCCCCHHH---HHHc----CCCH---------------
Confidence 55779999999999874 6666555544 33588888876664433 4443 3321
Q ss_pred HcCCCcEEEECcHHHHHHHHccC-CCCCCCcceEEEeCcccccc
Q 007481 116 LRSMPDIVVATPGRMIDHLRNSM-SVDLDDLAVLILDEADRLLE 158 (602)
Q Consensus 116 l~~~~~IvI~Tp~~L~~~l~~~~-~~~l~~l~llVlDEah~l~~ 158 (602)
.+++|+.|+.--++|.--. .+.-..+++||||.+--+..
T Consensus 1484 ----~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1484 ----DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp ----GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred ----HHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 1255666643322221000 01112367999999987664
No 266
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=69.73 E-value=6.9 Score=51.00 Aligned_cols=77 Identities=9% Similarity=0.050 Sum_probs=47.3
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHh----cCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 6 SRPLLRACEALGYSKPTPIQAACIPLAL----TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 6 ~~~ll~~l~~~g~~~pt~~Q~~~i~~~l----~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
...|.+.+..+|+. |+|.+..=+-.+. ..+.+++.||||||||.++ -+|...+..-.+ ....+.+|-|-.--
T Consensus 874 ~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~--~~L~~al~~l~~-~~~~~~~iNPKait 949 (3245)
T 3vkg_A 874 RKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSW--EVYLEAIEQVDN-IKSEAHVMDPKAIT 949 (3245)
T ss_dssp HHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHH--HHHHHHHTTTTT-CEEEEEEECTTTSC
T ss_pred HHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHH--HHHHHHHHHhhC-CCceEEEECCCCCc
Confidence 35567777888986 6665554432222 3566789999999999874 455555443321 22345677776554
Q ss_pred HHHHH
Q 007481 82 AVQVH 86 (602)
Q Consensus 82 a~Q~~ 86 (602)
..|.+
T Consensus 950 ~~eLy 954 (3245)
T 3vkg_A 950 KDQLF 954 (3245)
T ss_dssp HHHHH
T ss_pred hhhhc
Confidence 45544
No 267
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=69.40 E-value=2.4 Score=42.46 Aligned_cols=16 Identities=25% Similarity=0.079 Sum_probs=13.4
Q ss_pred CEEEEcCCCchHHHHH
Q 007481 37 DICGSAITGSGKTAAF 52 (602)
Q Consensus 37 dvii~a~TGSGKT~a~ 52 (602)
-++|.||||||||..+
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 4678999999999753
No 268
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=69.34 E-value=2 Score=39.78 Aligned_cols=20 Identities=15% Similarity=0.077 Sum_probs=16.9
Q ss_pred HhcCCCEEEEcCCCchHHHH
Q 007481 32 ALTGRDICGSAITGSGKTAA 51 (602)
Q Consensus 32 ~l~g~dvii~a~TGSGKT~a 51 (602)
+..|+-++++||+|||||..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHH
T ss_pred cccCCEEEEECCCCCCHHHH
Confidence 44578899999999999974
No 269
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=69.04 E-value=2.5 Score=42.28 Aligned_cols=16 Identities=44% Similarity=0.239 Sum_probs=13.3
Q ss_pred CEEEEcCCCchHHHHH
Q 007481 37 DICGSAITGSGKTAAF 52 (602)
Q Consensus 37 dvii~a~TGSGKT~a~ 52 (602)
-++|+||||||||..+
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3678999999999753
No 270
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=68.89 E-value=4.4 Score=42.85 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=20.0
Q ss_pred HHHHHHh---cCCCEEEEcCCCchHHHHH
Q 007481 27 ACIPLAL---TGRDICGSAITGSGKTAAF 52 (602)
Q Consensus 27 ~~i~~~l---~g~dvii~a~TGSGKT~a~ 52 (602)
++|..+. .|+.+++.++.|+|||...
T Consensus 140 r~ID~L~pi~kGq~~~i~G~sGvGKTtL~ 168 (473)
T 1sky_E 140 KVVDLLAPYIKGGKIGLFGGAGVGKTVLI 168 (473)
T ss_dssp HHHHHHSCEETTCEEEEECCSSSCHHHHH
T ss_pred hHHHHHhhhccCCEEEEECCCCCCccHHH
Confidence 3555554 4888999999999999754
No 271
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=68.81 E-value=7.5 Score=38.38 Aligned_cols=68 Identities=15% Similarity=0.061 Sum_probs=47.6
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhhc-----CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc------c-cccCcC
Q 007481 243 TSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------A-RGLDII 310 (602)
Q Consensus 243 ~~kvIIF~~s~~~a~~l~~~L~~~-----g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~------~-~GlDip 310 (602)
..++||.++|+..|..+...+... ++.+..++|+...... .....+|||+|.-- . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 447999999999999987777654 4567777776543211 13466899999532 1 357888
Q ss_pred CccEEEE
Q 007481 311 GVQTVIN 317 (602)
Q Consensus 311 ~v~~VI~ 317 (602)
.+.+||.
T Consensus 235 ~l~~lVl 241 (300)
T 3fmo_B 235 KIKVFVL 241 (300)
T ss_dssp GCSEEEE
T ss_pred hceEEEE
Confidence 8998885
No 272
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=68.69 E-value=7.2 Score=46.51 Aligned_cols=57 Identities=23% Similarity=0.193 Sum_probs=41.6
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHHHcCC------CCCCCcEEEEEcChHHHHHHHHHHHHHH
Q 007481 36 RDICGSAITGSGKTAAFALPTLERLLYRP------KRIPAIRVLILTPTRELAVQVHSMIEKI 92 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l~~~~------~~~~~~~vLiL~Ptr~La~Q~~~~~~~l 92 (602)
...+|.|.-|||||.+..--++..++... ......++|+|+=|+.-|.++.+.+...
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 35599999999999886555666555321 1234557999999999998888877654
No 273
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=68.61 E-value=1.7 Score=39.20 Aligned_cols=19 Identities=26% Similarity=0.130 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 007481 34 TGRDICGSAITGSGKTAAF 52 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a~ 52 (602)
.+..+++.|++|||||...
T Consensus 10 ~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCEEEECSTTSSHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHH
Confidence 4678999999999999853
No 274
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=68.37 E-value=6.1 Score=39.61 Aligned_cols=41 Identities=12% Similarity=0.002 Sum_probs=26.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 37 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
-+++.+|+|+|||... +.++....... .+.+++++..-..+
T Consensus 30 iteI~G~pGsGKTtL~-Lq~~~~~~~~g---~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNFG-LTMVSSYMRQY---PDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHHH-HHHHHHHHHHC---TTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHHhcC---CCceEEEEeccchh
Confidence 4669999999999754 45554444321 13468888765554
No 275
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=68.17 E-value=28 Score=36.82 Aligned_cols=74 Identities=14% Similarity=0.196 Sum_probs=50.5
Q ss_pred EEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHH----HcCCCcEEEECcHHHHHHHHccCCCCCCCcc
Q 007481 71 RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA----LRSMPDIVVATPGRMIDHLRNSMSVDLDDLA 146 (602)
Q Consensus 71 ~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~----l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~ 146 (602)
..+|++....-+..+++.+... +..+..++|+.+....... ..+..+|+|+|+..+-. .+++.+++
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~------GiDip~v~ 418 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST------GISVKNLH 418 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH------SCCCCSEE
T ss_pred CeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc------ccccccCc
Confidence 3445555565555566665542 3478899999876543332 24567899999776654 67888999
Q ss_pred eEEEeCcc
Q 007481 147 VLILDEAD 154 (602)
Q Consensus 147 llVlDEah 154 (602)
+||+..+.
T Consensus 419 ~vi~~~~~ 426 (510)
T 2oca_A 419 HVVLAHGV 426 (510)
T ss_dssp EEEESSCC
T ss_pred EEEEeCCC
Confidence 99988777
No 276
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=68.13 E-value=12 Score=35.47 Aligned_cols=71 Identities=13% Similarity=0.151 Sum_probs=50.4
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhhc----CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc-----c-ccccCcCCc
Q 007481 243 TSKVIIFSGTKQAAHRLKILFGLA----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----A-ARGLDIIGV 312 (602)
Q Consensus 243 ~~kvIIF~~s~~~a~~l~~~L~~~----g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~-----~-~~GlDip~v 312 (602)
+.++||.++++..+..+...+... ++.+..++|+.+.......+ ....+|+|+|.- + ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 458999999999998887766543 57788889888765543333 246799999952 1 223567788
Q ss_pred cEEEE
Q 007481 313 QTVIN 317 (602)
Q Consensus 313 ~~VI~ 317 (602)
++||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88774
No 277
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=67.94 E-value=3.2 Score=38.03 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=18.0
Q ss_pred cCCCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 34 TGRDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
.|.-+.+.||+|||||+. +-++..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl--~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL--VRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHH--HHHHHHH
T ss_pred CCcEEEEECcCCCCHHHH--HHHHHhh
Confidence 466678999999999974 4444443
No 278
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=67.71 E-value=1.9 Score=39.09 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCchHHHH
Q 007481 34 TGRDICGSAITGSGKTAA 51 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a 51 (602)
.|.-+++.||+|||||+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp TTEEEEEEECTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 466788999999999974
No 279
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=67.65 E-value=2.7 Score=43.23 Aligned_cols=18 Identities=33% Similarity=0.261 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCchHHHH
Q 007481 34 TGRDICGSAITGSGKTAA 51 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a 51 (602)
.|..+++.||||||||+.
T Consensus 135 ~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSEEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466788999999999974
No 280
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=67.43 E-value=2.8 Score=40.41 Aligned_cols=15 Identities=33% Similarity=-0.046 Sum_probs=12.9
Q ss_pred CEEEEcCCCchHHHH
Q 007481 37 DICGSAITGSGKTAA 51 (602)
Q Consensus 37 dvii~a~TGSGKT~a 51 (602)
-++++||||||||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 367999999999974
No 281
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=67.37 E-value=5.7 Score=44.24 Aligned_cols=69 Identities=10% Similarity=0.089 Sum_probs=47.4
Q ss_pred CcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceE
Q 007481 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVL 148 (602)
Q Consensus 69 ~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~ll 148 (602)
+.++||+||++.-+..+++.+... ++.+..++|............+..+|+||| +.+.. .+++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR~~v~~~F~~g~~~VLVaT-----dv~e~--GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSYDTEYPKCKNGDWDFVITT-----DISEM--GANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSHHHHGGGGGTCCCSEEEEC-----GGGGT--TCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHHHHHHHHHHCCCceEEEEC-----chhhc--ceeeC-CcEE
Confidence 347999999999999888887753 788899999533222222234567999999 22332 46666 6665
Q ss_pred E
Q 007481 149 I 149 (602)
Q Consensus 149 V 149 (602)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 5
No 282
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=67.20 E-value=2.8 Score=38.58 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=14.2
Q ss_pred CCEEEEcCCCchHHHH
Q 007481 36 RDICGSAITGSGKTAA 51 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a 51 (602)
+-+|++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999974
No 283
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=70.44 E-value=1.1 Score=40.18 Aligned_cols=73 Identities=19% Similarity=0.346 Sum_probs=48.9
Q ss_pred CcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHH----cCCCcEEEECcHHHHHHHHccCCCCCCC
Q 007481 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 144 (602)
Q Consensus 69 ~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l----~~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 144 (602)
+.++||.|+++..+..+++.+... ++.+..++|+.+.......+ .+..+|+|+| +.+. ..+++..
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~--~Gid~~~ 98 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-----DVAA--RGIDIPD 98 (170)
Confidence 347999999999999888887764 67788889887654433332 2456799999 2222 2455666
Q ss_pred cceEEEeC
Q 007481 145 LAVLILDE 152 (602)
Q Consensus 145 l~llVlDE 152 (602)
+++||.-+
T Consensus 99 ~~~Vi~~~ 106 (170)
T 2yjt_D 99 VSHVFNFD 106 (170)
Confidence 66666533
No 284
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=66.87 E-value=5.7 Score=40.84 Aligned_cols=42 Identities=31% Similarity=0.323 Sum_probs=28.4
Q ss_pred cCCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHH
Q 007481 34 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 81 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~L 81 (602)
.+.++++.|+||||||... -.++..+.. .+.+++|+=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~-~~~~~~~~~-----~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTA-KMLLLREYM-----QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHH-HHHHHHHHT-----TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHH-HHHHHHHHH-----CCCEEEEEeCCcCH
Confidence 4679999999999999753 333333332 23458888887654
No 285
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=66.69 E-value=3 Score=42.08 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=19.7
Q ss_pred cCCCEEEEcCCCchHHHHHHHHHHHHHH
Q 007481 34 TGRDICGSAITGSGKTAAFALPTLERLL 61 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a~~l~il~~l~ 61 (602)
.|..+++.||||||||+. +-++..++
T Consensus 170 ~g~~v~i~G~~GsGKTTl--l~~l~g~~ 195 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTY--IKSIMEFI 195 (330)
T ss_dssp HTCCEEEEESTTSCHHHH--HHHGGGGS
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhCCC
Confidence 488999999999999973 44444443
No 286
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=66.41 E-value=3.7 Score=36.49 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=17.5
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLER 59 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~ 59 (602)
+..+++.|++|||||+. .-++..
T Consensus 4 ~~~i~l~G~~GsGKSTl--~~~La~ 26 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI--GRQLAQ 26 (173)
T ss_dssp CCCEEEECCTTSCHHHH--HHHHHH
T ss_pred CCeEEEECCCCCCHHHH--HHHHHH
Confidence 56788999999999974 444444
No 287
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=66.37 E-value=3.8 Score=38.46 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=18.9
Q ss_pred cCCCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 34 TGRDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
.|+-+.+.||+|||||.. +-++..+
T Consensus 22 ~G~~~~lvGpsGsGKSTL--l~~L~g~ 46 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTL--IKKLLNE 46 (218)
T ss_dssp CCCCEEEECSTTSSHHHH--HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHhh
Confidence 477888999999999974 4444443
No 288
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=66.26 E-value=3.3 Score=38.44 Aligned_cols=18 Identities=11% Similarity=0.246 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCchHHHH
Q 007481 34 TGRDICGSAITGSGKTAA 51 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a 51 (602)
.|+-++++||+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 577888999999999974
No 289
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=66.19 E-value=16 Score=36.73 Aligned_cols=71 Identities=13% Similarity=0.177 Sum_probs=51.6
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc------ccccCcCC
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------ARGLDIIG 311 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~----~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~------~~GlDip~ 311 (602)
.+.++||.++++..+..+...+.. .++.+..++|+.+..+....+. ..+|+|+|.-. ...+++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 456999999999998888776654 4678899999998876655443 46799999421 22355667
Q ss_pred ccEEEE
Q 007481 312 VQTVIN 317 (602)
Q Consensus 312 v~~VI~ 317 (602)
+++||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 788774
No 290
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=66.02 E-value=2.5 Score=41.49 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCchHHHHH
Q 007481 35 GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~ 52 (602)
++.+++.||+|+|||..+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 578999999999999753
No 291
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=65.98 E-value=2.8 Score=38.08 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchHHHH
Q 007481 35 GRDICGSAITGSGKTAA 51 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a 51 (602)
+..+++.|++|||||.+
T Consensus 10 ~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 10 GINILITGTPGTGKTSM 26 (184)
T ss_dssp SCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 56789999999999985
No 292
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=65.80 E-value=32 Score=37.15 Aligned_cols=31 Identities=16% Similarity=0.125 Sum_probs=20.8
Q ss_pred cHHHHHHHHHHhc-----CCCEEEEcCCCchHHHHH
Q 007481 22 TPIQAACIPLALT-----GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 22 t~~Q~~~i~~~l~-----g~dvii~a~TGSGKT~a~ 52 (602)
+.-....+..++. .+-++|+|+.|.|||..+
T Consensus 129 R~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa 164 (591)
T 1z6t_A 129 RKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLA 164 (591)
T ss_dssp CHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHH
T ss_pred cHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHH
Confidence 4445555555553 234679999999999754
No 293
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=65.72 E-value=3.9 Score=37.16 Aligned_cols=23 Identities=35% Similarity=0.351 Sum_probs=16.6
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 36 RDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
+-+++.||+|||||+. +-++..+
T Consensus 2 ~ii~l~GpsGaGKsTl--~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL--LKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHH--HHHHHHH
T ss_pred CEEEEECCCCCCHHHH--HHHHHhh
Confidence 4578999999999974 4444443
No 294
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=65.55 E-value=7.3 Score=50.14 Aligned_cols=46 Identities=22% Similarity=0.133 Sum_probs=31.9
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHH----HhcCCCEEEEcCCCchHHHHHH
Q 007481 7 RPLLRACEALGYSKPTPIQAACIPL----ALTGRDICGSAITGSGKTAAFA 53 (602)
Q Consensus 7 ~~ll~~l~~~g~~~pt~~Q~~~i~~----~l~g~dvii~a~TGSGKT~a~~ 53 (602)
..+.+++...|+. |++.+..-+-. +...+.+++.||||||||.++-
T Consensus 892 ~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 892 QCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 4566777788876 66666443322 3346788999999999998643
No 295
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=65.37 E-value=7.1 Score=41.09 Aligned_cols=67 Identities=12% Similarity=0.077 Sum_probs=47.4
Q ss_pred EEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEE
Q 007481 71 RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 149 (602)
Q Consensus 71 ~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llV 149 (602)
++||.||++.-+.++++.+... ++.+..++|..........-.+..+|+|||. .+.. .+++.. .+||
T Consensus 190 ~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~-----v~~~--GiDip~-~~VI 256 (451)
T 2jlq_A 190 KTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEM--GANFRA-GRVI 256 (451)
T ss_dssp CEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHHHGGGGGSSCCSEEEECG-----GGGS--SCCCCC-SEEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHHHHHhhccCCceEEEECC-----HHHh--CcCCCC-CEEE
Confidence 6999999999999888887653 7788888887654333333346689999992 2333 566666 5555
No 296
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=65.32 E-value=12 Score=43.96 Aligned_cols=74 Identities=9% Similarity=0.101 Sum_probs=55.9
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhh----cCC----ceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc-cccccC-cCC
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGL----AAL----KAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-AARGLD-IIG 311 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~----~g~----~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~-~~~GlD-ip~ 311 (602)
.+.++||.++|+..+..+...+.. .++ .+..+||+.+..++....+.+.. .+|+|+|+- +..-+. +..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 357899999999999888776654 356 78999999999988888888877 999999952 111111 557
Q ss_pred ccEEEE
Q 007481 312 VQTVIN 317 (602)
Q Consensus 312 v~~VI~ 317 (602)
+++||.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 297
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=65.22 E-value=2.8 Score=37.08 Aligned_cols=15 Identities=13% Similarity=-0.199 Sum_probs=13.1
Q ss_pred CEEEEcCCCchHHHH
Q 007481 37 DICGSAITGSGKTAA 51 (602)
Q Consensus 37 dvii~a~TGSGKT~a 51 (602)
.+++.|+.|||||+.
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467999999999975
No 298
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=65.07 E-value=2.7 Score=39.15 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCchHHHH
Q 007481 35 GRDICGSAITGSGKTAA 51 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a 51 (602)
|+-+++.+|||+|||..
T Consensus 34 g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSET 50 (205)
T ss_dssp TEEEEEECCCTTTTHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 56688999999999964
No 299
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=65.07 E-value=2.8 Score=37.41 Aligned_cols=15 Identities=33% Similarity=0.277 Sum_probs=13.0
Q ss_pred CEEEEcCCCchHHHH
Q 007481 37 DICGSAITGSGKTAA 51 (602)
Q Consensus 37 dvii~a~TGSGKT~a 51 (602)
-+++.|++|||||+.
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 367999999999975
No 300
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=64.96 E-value=8.3 Score=41.21 Aligned_cols=71 Identities=15% Similarity=0.199 Sum_probs=47.3
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhhc----CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc-----cccc-c-CcCC
Q 007481 243 TSKVIIFSGTKQAAHRLKILFGLA----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----AARG-L-DIIG 311 (602)
Q Consensus 243 ~~kvIIF~~s~~~a~~l~~~L~~~----g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~-----~~~G-l-Dip~ 311 (602)
+.++||.++++..+......+... ++.+..+||+.+...+...+. ...+|+|+|.- +..+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999999888777666554 899999999987665433332 24789999943 2222 3 5677
Q ss_pred ccEEEE
Q 007481 312 VQTVIN 317 (602)
Q Consensus 312 v~~VI~ 317 (602)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888874
No 301
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=64.84 E-value=3.6 Score=37.70 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=17.8
Q ss_pred cCCCEEEEcCCCchHHHHHHHHHHHH
Q 007481 34 TGRDICGSAITGSGKTAAFALPTLER 59 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a~~l~il~~ 59 (602)
.|.-+++.||+|||||+. +-++..
T Consensus 5 ~g~~i~l~G~~GsGKSTl--~~~L~~ 28 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTV--RKRIFE 28 (207)
T ss_dssp CCCEEEEECSTTSCHHHH--HHHHHH
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHH
Confidence 466788999999999974 344443
No 302
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=64.57 E-value=72 Score=31.23 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=12.3
Q ss_pred EEEEcCCCchHHHHH
Q 007481 38 ICGSAITGSGKTAAF 52 (602)
Q Consensus 38 vii~a~TGSGKT~a~ 52 (602)
+++.+++|+|||..+
T Consensus 101 i~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 101 IMLVGVQGTGKTTTA 115 (297)
T ss_dssp EEEECSSCSSTTHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 557899999999753
No 303
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=64.18 E-value=4.1 Score=40.62 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=19.3
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLL 61 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~ 61 (602)
|.-+.|.||+|||||.. +-++..++
T Consensus 126 Ge~vaIvGpsGsGKSTL--l~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSML--CNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHH--HHHHHHHH
T ss_pred CCEEEEECCCCCcHHHH--HHHHhhhc
Confidence 67788999999999973 55555555
No 304
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=64.04 E-value=2.8 Score=40.19 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCchHHHH
Q 007481 35 GRDICGSAITGSGKTAA 51 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a 51 (602)
.+.+++.||+|+|||..
T Consensus 45 ~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 35789999999999975
No 305
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=63.98 E-value=3.3 Score=42.28 Aligned_cols=17 Identities=29% Similarity=0.306 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCchHHHH
Q 007481 35 GRDICGSAITGSGKTAA 51 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a 51 (602)
+..+++.||||||||+.
T Consensus 123 ~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 45678999999999974
No 306
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=63.83 E-value=4.6 Score=38.96 Aligned_cols=19 Identities=42% Similarity=0.651 Sum_probs=16.8
Q ss_pred hcCCCEEEEcCCCchHHHH
Q 007481 33 LTGRDICGSAITGSGKTAA 51 (602)
Q Consensus 33 l~g~dvii~a~TGSGKT~a 51 (602)
+.|..+++.|++|||||++
T Consensus 46 l~g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp HTTCCEEEECSTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3489999999999999985
No 307
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=63.36 E-value=3.2 Score=37.40 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCchHHHH
Q 007481 35 GRDICGSAITGSGKTAA 51 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a 51 (602)
+.-+++.|++|||||+.
T Consensus 3 ~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45688999999999975
No 308
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=63.23 E-value=4.7 Score=37.02 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=17.4
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLER 59 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~ 59 (602)
|.-+++.||+|||||+. +-++..
T Consensus 29 g~~i~l~G~~GsGKSTl--~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTI--AHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHH--HHHHHH
T ss_pred CcEEEEECCCCCCHHHH--HHHHHH
Confidence 56788999999999974 344433
No 309
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=63.22 E-value=3.7 Score=41.25 Aligned_cols=16 Identities=31% Similarity=0.160 Sum_probs=13.7
Q ss_pred CEEEEcCCCchHHHHH
Q 007481 37 DICGSAITGSGKTAAF 52 (602)
Q Consensus 37 dvii~a~TGSGKT~a~ 52 (602)
.++++||||||||...
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999753
No 310
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=62.97 E-value=4.2 Score=42.19 Aligned_cols=15 Identities=33% Similarity=0.350 Sum_probs=12.8
Q ss_pred EEEEcCCCchHHHHH
Q 007481 38 ICGSAITGSGKTAAF 52 (602)
Q Consensus 38 vii~a~TGSGKT~a~ 52 (602)
++|.||||||||..+
T Consensus 5 i~i~GptgsGKttla 19 (409)
T 3eph_A 5 IVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEECSSSSHHHHH
T ss_pred EEEECcchhhHHHHH
Confidence 678999999999753
No 311
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=62.78 E-value=3.7 Score=41.57 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=17.4
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 36 RDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
+.+++.||+|+|||..+ -.+...+
T Consensus 71 ~~vLl~GppGtGKT~la-~~la~~l 94 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIA-MGMAQAL 94 (368)
T ss_dssp CEEEEEESTTSSHHHHH-HHHHHHH
T ss_pred CEEEEECCCCCCHHHHH-HHHHHHh
Confidence 57999999999999753 3333333
No 312
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=62.06 E-value=4.8 Score=39.94 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCchHHHH
Q 007481 34 TGRDICGSAITGSGKTAA 51 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a 51 (602)
.+.++++.|++|+|||..
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 367899999999999975
No 313
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=61.92 E-value=4.1 Score=41.24 Aligned_cols=16 Identities=38% Similarity=0.125 Sum_probs=13.4
Q ss_pred CEEEEcCCCchHHHHH
Q 007481 37 DICGSAITGSGKTAAF 52 (602)
Q Consensus 37 dvii~a~TGSGKT~a~ 52 (602)
-++|+||||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4679999999999753
No 314
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=61.83 E-value=10 Score=40.56 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=19.4
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHc
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLY 62 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~ 62 (602)
+.+++|.|+||||||.+ +-.++..++.
T Consensus 167 ~pHlLIaG~TGSGKSt~-L~~li~sLl~ 193 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVG-VNAMILSMLY 193 (512)
T ss_dssp SCSEEEECCTTSSHHHH-HHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHH-HHHHHHHHHH
Confidence 46899999999999975 3444444443
No 315
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=61.67 E-value=7.1 Score=41.08 Aligned_cols=48 Identities=17% Similarity=-0.045 Sum_probs=28.7
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 89 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~ 89 (602)
|.-+++.|++|+|||.. ++-+...+... +.+|+|++.- +-..|+...+
T Consensus 197 G~liiIaG~pG~GKTtl-al~ia~~~a~~-----g~~vl~fSlE-ms~~ql~~R~ 244 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAF-ALKQAKNMSDN-----DDVVNLHSLE-MGKKENIKRL 244 (444)
T ss_dssp SCEEEEEECSSSSHHHH-HHHHHHHHHHT-----TCEEEEECSS-SCTTHHHHHH
T ss_pred CcEEEEEeCCCCChHHH-HHHHHHHHHHc-----CCEEEEEECC-CCHHHHHHHH
Confidence 45677999999999964 45555554433 2357777543 2233444443
No 316
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=61.58 E-value=3.1 Score=37.31 Aligned_cols=18 Identities=22% Similarity=0.087 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCchHHHHH
Q 007481 35 GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~ 52 (602)
|.-+++.||+|||||+.+
T Consensus 9 gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 556779999999999753
No 317
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=61.02 E-value=2.8 Score=37.85 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCchHHHH
Q 007481 35 GRDICGSAITGSGKTAA 51 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a 51 (602)
|..+++.|++|||||+.
T Consensus 4 g~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp EEEEEEECCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45688999999999975
No 318
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=61.00 E-value=26 Score=36.02 Aligned_cols=72 Identities=21% Similarity=0.278 Sum_probs=53.0
Q ss_pred cCCCeEEEEeCcHHHHHHHHHHHhhc-CC---ceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc-c-----ccccCcC
Q 007481 241 TFTSKVIIFSGTKQAAHRLKILFGLA-AL---KAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-A-----ARGLDII 310 (602)
Q Consensus 241 ~~~~kvIIF~~s~~~a~~l~~~L~~~-g~---~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~-~-----~~GlDip 310 (602)
..+.++||.|+++..+......+... +. .+..+||+....++..... ..+|+|+|.- + ...+++.
T Consensus 50 ~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~ 124 (494)
T 1wp9_A 50 KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLE 124 (494)
T ss_dssp HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTT
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchh
Confidence 35789999999999888887777654 55 8899999999887655443 4689999842 1 1235667
Q ss_pred CccEEEE
Q 007481 311 GVQTVIN 317 (602)
Q Consensus 311 ~v~~VI~ 317 (602)
.+++||.
T Consensus 125 ~~~~vIi 131 (494)
T 1wp9_A 125 DVSLIVF 131 (494)
T ss_dssp SCSEEEE
T ss_pred hceEEEE
Confidence 7888884
No 319
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=61.00 E-value=3.3 Score=37.01 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=14.5
Q ss_pred CCCEEEEcCCCchHHHH
Q 007481 35 GRDICGSAITGSGKTAA 51 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a 51 (602)
|..+++.|++|||||+.
T Consensus 8 g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45678999999999975
No 320
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=60.64 E-value=7.6 Score=38.59 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=18.3
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHc
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLY 62 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~ 62 (602)
|.-+.+.+|+|||||+. +..+..++.
T Consensus 102 g~vi~lvG~nGsGKTTl--l~~Lagll~ 127 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT--IAKLGRYYQ 127 (304)
T ss_dssp SSEEEEECSTTSSHHHH--HHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHH--HHHHHHHHH
Confidence 44566899999999974 445555544
No 321
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=60.57 E-value=5.6 Score=36.07 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=15.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHH
Q 007481 37 DICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l 60 (602)
.+.+.||+|||||+. +-++..+
T Consensus 2 ~i~l~G~nGsGKTTL--l~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL--VKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHH
T ss_pred EEEEECCCCCCHHHH--HHHHHHH
Confidence 467899999999974 3444433
No 322
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=60.40 E-value=5.9 Score=40.07 Aligned_cols=50 Identities=10% Similarity=-0.039 Sum_probs=27.9
Q ss_pred HHHHhc-----CCCEEEEcCCCchHHHHHHHHHHHHHHcC-CCCCCCcEEEEEcChH
Q 007481 29 IPLALT-----GRDICGSAITGSGKTAAFALPTLERLLYR-PKRIPAIRVLILTPTR 79 (602)
Q Consensus 29 i~~~l~-----g~dvii~a~TGSGKT~a~~l~il~~l~~~-~~~~~~~~vLiL~Ptr 79 (602)
+..++. |.-+++.||+|+|||..+ +.+....... ..+..+..++|+....
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla-~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHH-HHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHH-HHHHHHHhcccccCCCCCeEEEEECCC
Confidence 455554 245679999999999754 3333332211 1011234688886544
No 323
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=60.15 E-value=6 Score=34.66 Aligned_cols=23 Identities=26% Similarity=0.092 Sum_probs=16.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHHH
Q 007481 37 DICGSAITGSGKTAAFALPTLERLL 61 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l~ 61 (602)
-.+|.+|+|||||.. +-++..++
T Consensus 25 ~~~I~G~NGsGKSti--l~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL--LDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHH
T ss_pred eEEEECCCCCCHHHH--HHHHHHHH
Confidence 456899999999975 33443333
No 324
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=60.06 E-value=4.4 Score=38.38 Aligned_cols=72 Identities=17% Similarity=0.257 Sum_probs=48.1
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhhc----CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc-----ccc---ccCcC
Q 007481 243 TSKVIIFSGTKQAAHRLKILFGLA----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----AAR---GLDII 310 (602)
Q Consensus 243 ~~kvIIF~~s~~~a~~l~~~L~~~----g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~-----~~~---GlDip 310 (602)
+.++||.++++..+..+...+... ++.+..++|+.....+ ......+..+|+|+|.- +.. .+++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 457999999999999888777654 6677777765322211 11222457789999932 212 47788
Q ss_pred CccEEEE
Q 007481 311 GVQTVIN 317 (602)
Q Consensus 311 ~v~~VI~ 317 (602)
++.+||.
T Consensus 175 ~~~~lVi 181 (245)
T 3dkp_A 175 SVEWLVV 181 (245)
T ss_dssp TCCEEEE
T ss_pred cCcEEEE
Confidence 8888875
No 325
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=59.96 E-value=10 Score=42.10 Aligned_cols=67 Identities=19% Similarity=0.188 Sum_probs=48.9
Q ss_pred CCcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcce
Q 007481 68 PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAV 147 (602)
Q Consensus 68 ~~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~l 147 (602)
.+.++||.||++.-+.++++.+... ++.+..++|+.+... ......+|+|+|. .+.. .++++ +++
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~e---r~~~~~~VLVATd-----Vaer--GIDId-V~~ 459 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSV---IPTIGDVVVVATD-----ALMT--GYTGD-FDS 459 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGG---SCSSSCEEEEECT-----THHH--HCCCC-BSE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHH---HHhCCCcEEEECC-----hHHc--cCCCC-CcE
Confidence 3457999999999999988888753 788999999987653 2345569999993 3333 34454 766
Q ss_pred EE
Q 007481 148 LI 149 (602)
Q Consensus 148 lV 149 (602)
||
T Consensus 460 VI 461 (666)
T 3o8b_A 460 VI 461 (666)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 326
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=59.48 E-value=5.4 Score=36.87 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=19.1
Q ss_pred HHhcCCCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 31 LALTGRDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 31 ~~l~g~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
.+-.|.-+.+.||+|||||+. +-++..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL--l~~l~gl 43 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV--VRCLRER 43 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH--HHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH--HHHHHhh
Confidence 455678888999999999974 4444444
No 327
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=59.41 E-value=4.4 Score=37.53 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=17.0
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLL 61 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~ 61 (602)
|.-+.|.||+|||||+. +-++..++
T Consensus 22 g~~v~I~G~sGsGKSTl--~~~l~~~~ 46 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL--SNPLAAAL 46 (208)
T ss_dssp CEEEEEECCTTSCTHHH--HHHHHHHH
T ss_pred CeEEEEECCCCCCHHHH--HHHHHHHH
Confidence 44566999999999974 34444433
No 328
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=59.35 E-value=4.1 Score=36.89 Aligned_cols=16 Identities=19% Similarity=0.221 Sum_probs=13.3
Q ss_pred CCEEEEcCCCchHHHH
Q 007481 36 RDICGSAITGSGKTAA 51 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a 51 (602)
.-+++.||+|||||+.
T Consensus 3 ~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 3467899999999975
No 329
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=59.10 E-value=4.1 Score=37.40 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=14.1
Q ss_pred CCEEEEcCCCchHHHH
Q 007481 36 RDICGSAITGSGKTAA 51 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a 51 (602)
.-++++|++|||||+.
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688999999999975
No 330
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=58.98 E-value=30 Score=35.07 Aligned_cols=73 Identities=8% Similarity=0.137 Sum_probs=52.1
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhc----CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC-----ccc-cccCcCC
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGLA----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VAA-RGLDIIG 311 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~~----g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~-----~~~-~GlDip~ 311 (602)
.+.++||.++++..+..+...+... +..+..++|+...... ...+..+..+|+|+|. .+. ..+++..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 4678999999999988887777654 6778888888765443 4455567889999994 222 2355667
Q ss_pred ccEEEE
Q 007481 312 VQTVIN 317 (602)
Q Consensus 312 v~~VI~ 317 (602)
+++||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777774
No 331
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=58.88 E-value=33 Score=27.92 Aligned_cols=112 Identities=16% Similarity=0.180 Sum_probs=70.2
Q ss_pred EEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCccccccC-------cCCccEEEEc
Q 007481 246 VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD-------IIGVQTVINY 318 (602)
Q Consensus 246 vIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~~~GlD-------ip~v~~VI~~ 318 (602)
.+||.........+...++..|+.+..|+++.....|.+-++.|....+++--.-+--..--| .|.+++|++.
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvrtvedkedfrenireiwerypqldvvviv 84 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVVVIV 84 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 478888888888888889999999999999999999999999998876665444332211111 2666666654
Q ss_pred CCCC--ChhhHHHHhhhcccCCCcceEEEEEecCcHHHHHHHHHHh
Q 007481 319 ACPR--DLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 362 (602)
Q Consensus 319 d~p~--s~~~yiQriGRa~R~g~~g~~i~l~~~~d~~~l~~i~~~~ 362 (602)
.... -...|+...-- | | -.+++++...|....+.....+
T Consensus 85 ttddkewikdfieeake--r-g--vevfvvynnkdddrrkeaqqef 125 (162)
T 2l82_A 85 TTDDKEWIKDFIEEAKE--R-G--VEVFVVYNNKDDDRRKEAQQEF 125 (162)
T ss_dssp ECCCHHHHHHHHHHHHH--T-T--CEEEEEEECSCHHHHHHHHHHH
T ss_pred ecCcHHHHHHHHHHHHh--c-C--cEEEEEecCCCchhHHHHHHHh
Confidence 3321 23334333211 1 2 3455555665555544444433
No 332
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=58.77 E-value=4.9 Score=39.52 Aligned_cols=17 Identities=29% Similarity=0.130 Sum_probs=14.4
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
..+++.||+|+|||..+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36899999999999753
No 333
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=58.64 E-value=5.6 Score=35.65 Aligned_cols=23 Identities=22% Similarity=0.106 Sum_probs=16.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHHH
Q 007481 37 DICGSAITGSGKTAAFALPTLERLL 61 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l~ 61 (602)
-.+|.+|+|||||.. +-++..++
T Consensus 28 ~~~i~G~NGsGKStl--l~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNI--GDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHH--HHHHHHHT
T ss_pred cEEEECCCCCCHHHH--HHHHHHHH
Confidence 456999999999975 34444443
No 334
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=58.62 E-value=7.6 Score=46.26 Aligned_cols=32 Identities=13% Similarity=-0.002 Sum_probs=24.9
Q ss_pred CeEEEEeCcH-HHHHHHHHHHhhcCCceeeccC
Q 007481 244 SKVIIFSGTK-QAAHRLKILFGLAALKAAELHG 275 (602)
Q Consensus 244 ~kvIIF~~s~-~~a~~l~~~L~~~g~~~~~lhg 275 (602)
..+.|.+++. ..+..+...|...|+++....+
T Consensus 343 ~diAVL~R~~~~~~~~i~~~L~~~gIP~~~~~~ 375 (1166)
T 3u4q_B 343 KDVAILARQPEDYKDMVKEVFADYEIPYFIDGK 375 (1166)
T ss_dssp GGEEEEESCGGGTHHHHHHHHHHTTCCEEESSC
T ss_pred hheEEEeCChHHHHHHHHHHHHHcCCCEEECCC
Confidence 3588888887 4788889999988988766544
No 335
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=58.48 E-value=4.7 Score=39.74 Aligned_cols=17 Identities=18% Similarity=-0.039 Sum_probs=14.2
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
+.+++.||+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46788999999999753
No 336
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=58.41 E-value=14 Score=40.63 Aligned_cols=68 Identities=12% Similarity=0.050 Sum_probs=47.8
Q ss_pred cEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEE
Q 007481 70 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 149 (602)
Q Consensus 70 ~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llV 149 (602)
.++||.|+++.-|..+++.+... ++.+..++|............+..+|+|||. .+.. .+++. +++||
T Consensus 356 ~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd-----v~~r--GiDi~-v~~VI 423 (618)
T 2whx_A 356 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEM--GANFR-AGRVI 423 (618)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHHHHTTHHHHSCCSEEEECG-----GGGT--TCCCC-CSEEE
T ss_pred CCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHHHHHHhhcCCCcEEEEECc-----HHHc--CcccC-ceEEE
Confidence 36999999999999998888864 7788888886443333333456789999993 3333 45664 66653
No 337
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=58.32 E-value=22 Score=40.34 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=43.0
Q ss_pred cCCCeEEEEeCcHHHHHHHHHHHh----hcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC
Q 007481 241 TFTSKVIIFSGTKQAAHRLKILFG----LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301 (602)
Q Consensus 241 ~~~~kvIIF~~s~~~a~~l~~~L~----~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~ 301 (602)
..+..++|.|+|...|.+.+..+. ..|+++..+.|+++..+|.... ..+|+++|+
T Consensus 122 L~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTp 180 (844)
T 1tf5_A 122 LTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTN 180 (844)
T ss_dssp TTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEH
T ss_pred HcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 346689999999999987766554 4689999999999987665432 368999995
No 338
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=58.26 E-value=5.7 Score=37.40 Aligned_cols=20 Identities=30% Similarity=0.298 Sum_probs=15.8
Q ss_pred HhcCCCEEEEcCCCchHHHH
Q 007481 32 ALTGRDICGSAITGSGKTAA 51 (602)
Q Consensus 32 ~l~g~dvii~a~TGSGKT~a 51 (602)
+-.|.-+++.||.|||||+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 34577888999999999974
No 339
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=58.24 E-value=4.8 Score=35.96 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=14.3
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
+.+++.+++|||||...
T Consensus 5 ~~i~i~G~~GsGKsTla 21 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 36889999999999753
No 340
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=58.15 E-value=4.2 Score=36.72 Aligned_cols=17 Identities=24% Similarity=0.139 Sum_probs=14.2
Q ss_pred CCCEEEEcCCCchHHHH
Q 007481 35 GRDICGSAITGSGKTAA 51 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a 51 (602)
+.-+++.|++|||||+.
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTL 21 (193)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34578999999999975
No 341
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=58.01 E-value=5.8 Score=36.37 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=15.0
Q ss_pred cCCCEEEEcCCCchHHHH
Q 007481 34 TGRDICGSAITGSGKTAA 51 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a 51 (602)
.|.-+++.||+|||||+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp CCEEEEEECSTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 356777999999999975
No 342
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=57.86 E-value=5.8 Score=40.48 Aligned_cols=18 Identities=39% Similarity=0.270 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchHHHHH
Q 007481 35 GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~ 52 (602)
..++++.||+|+|||..+
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 468999999999999753
No 343
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=57.67 E-value=6.1 Score=36.70 Aligned_cols=17 Identities=29% Similarity=0.007 Sum_probs=14.2
Q ss_pred CCCEEEEcCCCchHHHH
Q 007481 35 GRDICGSAITGSGKTAA 51 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a 51 (602)
|.-+.+.+|+|||||+.
T Consensus 25 G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQL 41 (231)
T ss_dssp SEEEEEEESTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45677999999999974
No 344
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=57.57 E-value=7.7 Score=35.56 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=25.8
Q ss_pred CCCcceEEEeCcccc--ccCCcHHHHHHHHHhCCCCcceeeeeccC
Q 007481 142 LDDLAVLILDEADRL--LELGFSAEIHELVRLCPKRRQTMLFSATL 185 (602)
Q Consensus 142 l~~l~llVlDEah~l--~~~gf~~~i~~i~~~~~~~~q~il~SAT~ 185 (602)
+...+++|+||+..+ .+..|...+..++... ..+|+-|.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~---~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP---GTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS---SCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC---CcEEEEEeec
Confidence 456789999998777 3444666666666532 2244445664
No 345
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=57.50 E-value=5.3 Score=37.02 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=20.8
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCchHHHH
Q 007481 22 TPIQAACIPLALTGRDICGSAITGSGKTAA 51 (602)
Q Consensus 22 t~~Q~~~i~~~l~g~dvii~a~TGSGKT~a 51 (602)
++.+... ..+-.|.-+++.|++|||||..
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTL 41 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHH
Confidence 4555555 3344567788999999999975
No 346
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=57.48 E-value=5.3 Score=42.15 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=15.1
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
+++++.||+|+|||..+
T Consensus 64 ~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 68999999999999754
No 347
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=57.41 E-value=4.6 Score=35.73 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
+++++.++.|||||++.
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57889999999999853
No 348
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=57.26 E-value=6.4 Score=36.24 Aligned_cols=24 Identities=33% Similarity=0.147 Sum_probs=16.7
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
|.-+.+.||+|||||+. +-++..+
T Consensus 6 ~~~i~i~G~~GsGKSTl--~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTL--AQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHH--HHHHHHH
T ss_pred cEEEEEECCCCCCHHHH--HHHHHHH
Confidence 34466999999999974 4444443
No 349
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=57.09 E-value=5 Score=36.34 Aligned_cols=18 Identities=28% Similarity=0.158 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCchHHHH
Q 007481 34 TGRDICGSAITGSGKTAA 51 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a 51 (602)
.+.-+++.|++|||||+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp TSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456788999999999985
No 350
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=56.97 E-value=5.5 Score=37.99 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=14.0
Q ss_pred CCEEEEcCCCchHHHH
Q 007481 36 RDICGSAITGSGKTAA 51 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a 51 (602)
+.+++.||+|+|||..
T Consensus 50 ~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHL 65 (254)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4589999999999974
No 351
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=56.90 E-value=7.4 Score=39.67 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=18.0
Q ss_pred HHHHhcCCCEE--EEcCCCchHHHHH
Q 007481 29 IPLALTGRDIC--GSAITGSGKTAAF 52 (602)
Q Consensus 29 i~~~l~g~dvi--i~a~TGSGKT~a~ 52 (602)
+..+++|-|+. .-|+||||||...
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 45566787644 6899999999763
No 352
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=56.82 E-value=27 Score=39.90 Aligned_cols=56 Identities=18% Similarity=0.070 Sum_probs=43.8
Q ss_pred hcCCCeEEEEeCcHHHHHHHHHHH----hhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC
Q 007481 240 KTFTSKVIIFSGTKQAAHRLKILF----GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301 (602)
Q Consensus 240 ~~~~~kvIIF~~s~~~a~~l~~~L----~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~ 301 (602)
...+..++|.++|...|.+.+..+ ...|+++..+.|+++..+|.... ..+|+++|+
T Consensus 117 aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 117 ALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp HTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred HHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 344668999999999887766554 45699999999999987766554 379999995
No 353
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=56.64 E-value=4.8 Score=36.28 Aligned_cols=17 Identities=18% Similarity=0.079 Sum_probs=14.1
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
.-+++.|++|||||+..
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999753
No 354
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=56.15 E-value=14 Score=39.94 Aligned_cols=43 Identities=21% Similarity=0.379 Sum_probs=27.2
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 79 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr 79 (602)
.-+++|.|.||||||.+ +-.++..++.... ....+++++=|..
T Consensus 214 ~pHlLIaG~TGSGKS~~-L~tlI~sLl~~~s-P~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVG-VNAMLLSILFKST-PSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHH-HHHHHHHHHTTCC-TTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHH-HHHHHHHHHHhCC-CcceEEEEeCCCh
Confidence 36899999999999976 4455555554321 1234566666653
No 355
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=56.15 E-value=92 Score=31.17 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=13.4
Q ss_pred CEEEEcCCCchHHHHH
Q 007481 37 DICGSAITGSGKTAAF 52 (602)
Q Consensus 37 dvii~a~TGSGKT~a~ 52 (602)
.+++++++|+|||..+
T Consensus 81 ~I~i~G~~G~GKSTl~ 96 (355)
T 3p32_A 81 RVGITGVPGVGKSTAI 96 (355)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999753
No 356
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=55.92 E-value=8.4 Score=39.95 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=19.3
Q ss_pred HHHHHhcCCCEE--EEcCCCchHHHHH
Q 007481 28 CIPLALTGRDIC--GSAITGSGKTAAF 52 (602)
Q Consensus 28 ~i~~~l~g~dvi--i~a~TGSGKT~a~ 52 (602)
.+..++.|-|+. .-|+||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 456667887754 6899999999774
No 357
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=55.85 E-value=4.8 Score=36.23 Aligned_cols=15 Identities=27% Similarity=0.246 Sum_probs=13.0
Q ss_pred CEEEEcCCCchHHHH
Q 007481 37 DICGSAITGSGKTAA 51 (602)
Q Consensus 37 dvii~a~TGSGKT~a 51 (602)
-+++.|+.|||||+.
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367999999999975
No 358
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=55.82 E-value=22 Score=34.80 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=50.4
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc------ccccCcCCc
Q 007481 243 TSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------ARGLDIIGV 312 (602)
Q Consensus 243 ~~kvIIF~~s~~~a~~l~~~L~~----~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~------~~GlDip~v 312 (602)
+.++||.++++..+..+...+.. .+..+..+||+.+..+....+ . ..+|+|+|.-. ...+++..+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV---R--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHH---T--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhc---C--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 67899999999999888777764 357888999998876654333 2 47899999421 223456777
Q ss_pred cEEEE
Q 007481 313 QTVIN 317 (602)
Q Consensus 313 ~~VI~ 317 (602)
++||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77774
No 359
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=55.77 E-value=21 Score=40.36 Aligned_cols=71 Identities=11% Similarity=-0.032 Sum_probs=50.9
Q ss_pred cCCCeEEEEeCcHHHHHHHHHHH----hhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc------ccc----
Q 007481 241 TFTSKVIIFSGTKQAAHRLKILF----GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------ARG---- 306 (602)
Q Consensus 241 ~~~~kvIIF~~s~~~a~~l~~~L----~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~------~~G---- 306 (602)
..+..++|.|+|...|.+.+..+ ...|+++..+.|+++..+|.... ..+|+|+|+-- ..+
T Consensus 113 l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~ 186 (853)
T 2fsf_A 113 LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFS 186 (853)
T ss_dssp TTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSS
T ss_pred HcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhcc
Confidence 34568999999999887776555 44689999999999986554432 37999999631 222
Q ss_pred ---cCcCCccEEEE
Q 007481 307 ---LDIIGVQTVIN 317 (602)
Q Consensus 307 ---lDip~v~~VI~ 317 (602)
+++..+.++|.
T Consensus 187 ~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 187 PEERVQRKLHYALV 200 (853)
T ss_dssp GGGCCCCSCCEEEE
T ss_pred HhHhcccCCcEEEE
Confidence 45567777774
No 360
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=55.44 E-value=26 Score=39.93 Aligned_cols=71 Identities=18% Similarity=0.117 Sum_probs=51.2
Q ss_pred cCCCeEEEEeCcHHHHHHHHHHH----hhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCcc------c------
Q 007481 241 TFTSKVIIFSGTKQAAHRLKILF----GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------A------ 304 (602)
Q Consensus 241 ~~~~kvIIF~~s~~~a~~l~~~L----~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~~------~------ 304 (602)
..+..++|.|+|...|.+.+..+ ...|+++..+.|+++..+|.... ..+|+++|+-- .
T Consensus 150 L~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~~~ 223 (922)
T 1nkt_A 150 LAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMAHS 223 (922)
T ss_dssp TTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSS
T ss_pred HhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhhcc
Confidence 34668999999999887766555 45699999999999987665443 36899999621 1
Q ss_pred -cccCcCCccEEEE
Q 007481 305 -RGLDIIGVQTVIN 317 (602)
Q Consensus 305 -~GlDip~v~~VI~ 317 (602)
..+++..+.++|.
T Consensus 224 ~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 224 LDDLVQRGHHYAIV 237 (922)
T ss_dssp GGGCCCCCCCEEEE
T ss_pred HhhhccCCCCEEEE
Confidence 1355566777663
No 361
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=55.44 E-value=6.1 Score=35.50 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=14.3
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
..+++.|++|||||.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45889999999999753
No 362
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=55.39 E-value=6.6 Score=39.44 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=14.5
Q ss_pred CCEEEEcCCCchHHHH
Q 007481 36 RDICGSAITGSGKTAA 51 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a 51 (602)
..+++.||+|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 6799999999999975
No 363
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=55.29 E-value=5.2 Score=37.04 Aligned_cols=16 Identities=25% Similarity=0.383 Sum_probs=13.5
Q ss_pred CEEEEcCCCchHHHHH
Q 007481 37 DICGSAITGSGKTAAF 52 (602)
Q Consensus 37 dvii~a~TGSGKT~a~ 52 (602)
.+++.|++|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999853
No 364
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=55.21 E-value=7.6 Score=38.53 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=16.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHHHc
Q 007481 37 DICGSAITGSGKTAAFALPTLERLLY 62 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l~~ 62 (602)
-+.+.||+|||||+. +..+..++.
T Consensus 102 vi~lvG~nGsGKTTl--l~~Lag~l~ 125 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTS--LGKLAHRLK 125 (302)
T ss_dssp EEEEECCTTSCHHHH--HHHHHHHHH
T ss_pred EEEEEcCCCCCHHHH--HHHHHHHHH
Confidence 456899999999974 444444443
No 365
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=55.19 E-value=6.4 Score=40.22 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=13.6
Q ss_pred CEEEEcCCCchHHHHH
Q 007481 37 DICGSAITGSGKTAAF 52 (602)
Q Consensus 37 dvii~a~TGSGKT~a~ 52 (602)
-++|.||||||||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4669999999999864
No 366
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=55.10 E-value=17 Score=41.29 Aligned_cols=71 Identities=15% Similarity=0.199 Sum_probs=47.3
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhhc----CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc-----cccc-c-CcCC
Q 007481 243 TSKVIIFSGTKQAAHRLKILFGLA----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----AARG-L-DIIG 311 (602)
Q Consensus 243 ~~kvIIF~~s~~~a~~l~~~L~~~----g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~-----~~~G-l-Dip~ 311 (602)
+.++||.++++..+......+... ++.+..+||+.+...+...+. +..+|+|+|.- +..+ + ++.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999999888876666544 899999999987665433332 36789999942 1222 3 5667
Q ss_pred ccEEEE
Q 007481 312 VQTVIN 317 (602)
Q Consensus 312 v~~VI~ 317 (602)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788884
No 367
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=55.00 E-value=8.8 Score=38.55 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=18.0
Q ss_pred HHHHhcCCCE--EEEcCCCchHHHHH
Q 007481 29 IPLALTGRDI--CGSAITGSGKTAAF 52 (602)
Q Consensus 29 i~~~l~g~dv--ii~a~TGSGKT~a~ 52 (602)
+..++.|.|+ +.-|+||||||...
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEe
Confidence 4456678764 46899999999763
No 368
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=54.99 E-value=5.5 Score=36.35 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=15.2
Q ss_pred cCCCEEEEcCCCchHHHH
Q 007481 34 TGRDICGSAITGSGKTAA 51 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a 51 (602)
.|.-+++.|+.|||||+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 356788999999999985
No 369
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=54.92 E-value=4.3 Score=39.97 Aligned_cols=16 Identities=31% Similarity=0.308 Sum_probs=13.6
Q ss_pred CCEEEEcCCCchHHHH
Q 007481 36 RDICGSAITGSGKTAA 51 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a 51 (602)
.-++++||+|||||+.
T Consensus 34 ~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSL 49 (287)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3477999999999975
No 370
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=54.90 E-value=5.9 Score=35.02 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=13.8
Q ss_pred CCEEEEcCCCchHHHH
Q 007481 36 RDICGSAITGSGKTAA 51 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a 51 (602)
+.+++.|++|||||.+
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 3578999999999975
No 371
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=54.89 E-value=2.9 Score=40.37 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCchHHHHH
Q 007481 35 GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~ 52 (602)
.+.+++.||+|+|||..+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 467899999999999753
No 372
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=54.76 E-value=6.4 Score=39.97 Aligned_cols=18 Identities=28% Similarity=0.145 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchHHHHH
Q 007481 35 GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~ 52 (602)
.+.+++.||+|+|||..+
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 468999999999999753
No 373
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=54.50 E-value=6.9 Score=36.91 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCchHHHHH
Q 007481 35 GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~ 52 (602)
+..+++.|++|||||...
T Consensus 16 ~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 467899999999999753
No 374
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=54.38 E-value=5.3 Score=35.91 Aligned_cols=15 Identities=27% Similarity=0.180 Sum_probs=13.2
Q ss_pred CEEEEcCCCchHHHH
Q 007481 37 DICGSAITGSGKTAA 51 (602)
Q Consensus 37 dvii~a~TGSGKT~a 51 (602)
-+++.|++|||||+.
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477999999999985
No 375
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=54.33 E-value=13 Score=39.42 Aligned_cols=71 Identities=15% Similarity=0.255 Sum_probs=49.8
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhhc----CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc-----cccc-c-CcCC
Q 007481 243 TSKVIIFSGTKQAAHRLKILFGLA----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----AARG-L-DIIG 311 (602)
Q Consensus 243 ~~kvIIF~~s~~~a~~l~~~L~~~----g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~-----~~~G-l-Dip~ 311 (602)
+.++||+++++..+......+... ++.+..+||+.+...+...+. +..+|+|+|.- +..+ + ++..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 678999999998888776666554 899999999986654433222 24789999842 2222 3 5667
Q ss_pred ccEEEE
Q 007481 312 VQTVIN 317 (602)
Q Consensus 312 v~~VI~ 317 (602)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788874
No 376
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=54.30 E-value=4.1 Score=37.35 Aligned_cols=16 Identities=19% Similarity=0.167 Sum_probs=13.9
Q ss_pred CCEEEEcCCCchHHHH
Q 007481 36 RDICGSAITGSGKTAA 51 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a 51 (602)
..+++.|++|||||+.
T Consensus 21 ~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4588999999999985
No 377
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=54.14 E-value=10 Score=38.55 Aligned_cols=47 Identities=21% Similarity=0.133 Sum_probs=30.0
Q ss_pred HHHHHHhc-C-----CCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChH
Q 007481 27 ACIPLALT-G-----RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 79 (602)
Q Consensus 27 ~~i~~~l~-g-----~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr 79 (602)
..+..+|. | .-++|.+|+|+|||.. ++.++..+... +.+++++.+-.
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTL-al~la~~~~~~-----gg~VlyId~E~ 99 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTL-ALHAIAEAQKM-----GGVAAFIDAEH 99 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHH-HHHHHHHHHHT-----TCCEEEEESSC
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHH-HHHHHHHHHhc-----CCeEEEEeccc
Confidence 35667776 3 4577999999999965 45555444332 23477776544
No 378
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=53.98 E-value=14 Score=36.15 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchHHHHH
Q 007481 35 GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~ 52 (602)
|.-+++.||+|+|||+.+
T Consensus 35 G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp TCEEEEEESTTSSHHHHH
T ss_pred CeEEEEEeCCCCCHHHHH
Confidence 567789999999999753
No 379
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=53.92 E-value=5.4 Score=36.18 Aligned_cols=18 Identities=28% Similarity=0.148 Sum_probs=15.2
Q ss_pred cCCCEEEEcCCCchHHHH
Q 007481 34 TGRDICGSAITGSGKTAA 51 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a 51 (602)
.+.-+++.|++|||||+.
T Consensus 11 ~~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp HSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356788999999999975
No 380
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=53.86 E-value=7.2 Score=35.94 Aligned_cols=18 Identities=28% Similarity=0.012 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCchHHHHH
Q 007481 35 GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~ 52 (602)
|.-+++.+|+|+|||..+
T Consensus 20 G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp TSEEEEECSTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 456779999999999754
No 381
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=53.78 E-value=8.6 Score=38.93 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=17.7
Q ss_pred HHHHhcCCCE--EEEcCCCchHHHHH
Q 007481 29 IPLALTGRDI--CGSAITGSGKTAAF 52 (602)
Q Consensus 29 i~~~l~g~dv--ii~a~TGSGKT~a~ 52 (602)
|..+++|-|+ +.-|+||||||...
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 3455678765 46899999999763
No 382
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=53.60 E-value=5.7 Score=36.77 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=13.5
Q ss_pred CEEEEcCCCchHHHHH
Q 007481 37 DICGSAITGSGKTAAF 52 (602)
Q Consensus 37 dvii~a~TGSGKT~a~ 52 (602)
.+++.|++|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999853
No 383
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=53.40 E-value=7.8 Score=39.57 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=15.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHH
Q 007481 37 DICGSAITGSGKTAAFALPTLER 59 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~ 59 (602)
-.++.|+||+|||.. +-++..
T Consensus 27 l~vi~G~NGaGKT~i--leAI~~ 47 (371)
T 3auy_A 27 IVAIIGENGSGKSSI--FEAVFF 47 (371)
T ss_dssp EEEEEECTTSSHHHH--HHHHHH
T ss_pred eEEEECCCCCCHHHH--HHHHHH
Confidence 467999999999985 444444
No 384
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=53.32 E-value=6 Score=36.82 Aligned_cols=17 Identities=18% Similarity=0.175 Sum_probs=14.5
Q ss_pred CCCEEEEcCCCchHHHH
Q 007481 35 GRDICGSAITGSGKTAA 51 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a 51 (602)
+..+++.|++|||||+.
T Consensus 4 ~~~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQ 20 (220)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45688999999999975
No 385
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=53.31 E-value=5.3 Score=37.55 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=10.6
Q ss_pred CCCEEEEcCCCchHHHH
Q 007481 35 GRDICGSAITGSGKTAA 51 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a 51 (602)
|.-+.+.||+|||||+.
T Consensus 27 G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTV 43 (231)
T ss_dssp CCEEEEECSCC----CH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 56677999999999974
No 386
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=53.02 E-value=5.6 Score=37.28 Aligned_cols=17 Identities=24% Similarity=0.089 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCchHHHH
Q 007481 35 GRDICGSAITGSGKTAA 51 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a 51 (602)
+..+++.|++|||||+.
T Consensus 7 ~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45688999999999985
No 387
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=52.98 E-value=5.5 Score=35.71 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=17.3
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
|..+++.++.|||||+. .-.+...
T Consensus 5 g~~i~l~G~~GsGKST~--~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTV--SMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHH--HHHHHHH
T ss_pred CcEEEEECCCCCCHHHH--HHHHHHH
Confidence 55678999999999975 3444443
No 388
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=52.93 E-value=9.8 Score=38.86 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=17.8
Q ss_pred HHHHhcCCCEE--EEcCCCchHHHHH
Q 007481 29 IPLALTGRDIC--GSAITGSGKTAAF 52 (602)
Q Consensus 29 i~~~l~g~dvi--i~a~TGSGKT~a~ 52 (602)
+..++.|-|+. .-|+||||||...
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceEE
Confidence 34556787644 6899999999763
No 389
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=52.90 E-value=9.4 Score=38.87 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=17.9
Q ss_pred HHHHhcCCCEE--EEcCCCchHHHHH
Q 007481 29 IPLALTGRDIC--GSAITGSGKTAAF 52 (602)
Q Consensus 29 i~~~l~g~dvi--i~a~TGSGKT~a~ 52 (602)
+..+++|.|+. .-|+||||||...
T Consensus 96 v~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 96 VSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCceEEEEECCCCCCCceEe
Confidence 45556787754 6899999999763
No 390
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=52.67 E-value=6.5 Score=36.64 Aligned_cols=18 Identities=22% Similarity=0.139 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchHHHHH
Q 007481 35 GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~ 52 (602)
...+++.|++|||||+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 357899999999999853
No 391
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=52.62 E-value=10 Score=38.19 Aligned_cols=25 Identities=28% Similarity=0.571 Sum_probs=19.3
Q ss_pred HHHHHhcCCCEE--EEcCCCchHHHHH
Q 007481 28 CIPLALTGRDIC--GSAITGSGKTAAF 52 (602)
Q Consensus 28 ~i~~~l~g~dvi--i~a~TGSGKT~a~ 52 (602)
.+..++.|.|+. .-|+||||||...
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 456677887744 6899999999763
No 392
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=52.53 E-value=7.6 Score=36.93 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=17.8
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
|.-+.+.||+|||||+ ++-++..+
T Consensus 31 Ge~~~iiG~nGsGKST--Ll~~l~Gl 54 (235)
T 3tif_A 31 GEFVSIMGPSGSGKST--MLNIIGCL 54 (235)
T ss_dssp TCEEEEECSTTSSHHH--HHHHHTTS
T ss_pred CCEEEEECCCCCcHHH--HHHHHhcC
Confidence 5667799999999997 35555443
No 393
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=52.45 E-value=7.3 Score=37.81 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=13.9
Q ss_pred CCEEEEcCCCchHHHH
Q 007481 36 RDICGSAITGSGKTAA 51 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a 51 (602)
+.+++.+|+|+|||..
T Consensus 74 ~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CeEEEECCCcChHHHH
Confidence 4589999999999974
No 394
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=52.45 E-value=8.3 Score=39.15 Aligned_cols=25 Identities=36% Similarity=0.624 Sum_probs=18.8
Q ss_pred HHHHHhcCCCEE--EEcCCCchHHHHH
Q 007481 28 CIPLALTGRDIC--GSAITGSGKTAAF 52 (602)
Q Consensus 28 ~i~~~l~g~dvi--i~a~TGSGKT~a~ 52 (602)
.+..+++|-|+. .-|+||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 455566787754 6899999999764
No 395
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=52.35 E-value=6.2 Score=36.25 Aligned_cols=14 Identities=36% Similarity=0.347 Sum_probs=12.4
Q ss_pred EEEEcCCCchHHHH
Q 007481 38 ICGSAITGSGKTAA 51 (602)
Q Consensus 38 vii~a~TGSGKT~a 51 (602)
+.+.|++|||||++
T Consensus 5 i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 5 VGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56899999999975
No 396
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=52.35 E-value=10 Score=38.49 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=17.3
Q ss_pred HHHhcCCCEE--EEcCCCchHHHHH
Q 007481 30 PLALTGRDIC--GSAITGSGKTAAF 52 (602)
Q Consensus 30 ~~~l~g~dvi--i~a~TGSGKT~a~ 52 (602)
..++.|-|+. .-|+||||||...
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceeEEeecCCCCCCCEEe
Confidence 4456787644 6899999999763
No 397
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=52.30 E-value=9.3 Score=39.63 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=17.7
Q ss_pred HHHHhcCCCEE--EEcCCCchHHHHH
Q 007481 29 IPLALTGRDIC--GSAITGSGKTAAF 52 (602)
Q Consensus 29 i~~~l~g~dvi--i~a~TGSGKT~a~ 52 (602)
+..++.|-|+. .-|+||||||...
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEe
Confidence 34566787644 6899999999764
No 398
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=52.25 E-value=10 Score=38.39 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=17.7
Q ss_pred HHHHhcCCCEE--EEcCCCchHHHHH
Q 007481 29 IPLALTGRDIC--GSAITGSGKTAAF 52 (602)
Q Consensus 29 i~~~l~g~dvi--i~a~TGSGKT~a~ 52 (602)
+..+++|.|+. .-|+||||||...
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 34556787654 6899999999763
No 399
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=52.22 E-value=6.7 Score=39.20 Aligned_cols=17 Identities=24% Similarity=0.179 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchHHHH
Q 007481 35 GRDICGSAITGSGKTAA 51 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a 51 (602)
..++++.||+|+|||..
T Consensus 45 ~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GCCEEEECCGGGCTTHH
T ss_pred CceEEEECCCCccHHHH
Confidence 46799999999999975
No 400
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=52.13 E-value=26 Score=38.92 Aligned_cols=73 Identities=19% Similarity=0.224 Sum_probs=53.1
Q ss_pred EEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHH---HHHHHHc---CCCcEEEECcHHHHHHHHccCCCCCCCc
Q 007481 72 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK---MQETALR---SMPDIVVATPGRMIDHLRNSMSVDLDDL 145 (602)
Q Consensus 72 vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~---~~~~~l~---~~~~IvI~Tp~~L~~~l~~~~~~~l~~l 145 (602)
.+|+|+++.-+.++++.+... ++.+..++|+.+.. .+...+. +..+|+|||. .+. .++++ .+
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e--~GlDi-~v 390 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIG--MGLNL-SI 390 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGG--SSCCC-CB
T ss_pred CEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHH--CCcCc-Cc
Confidence 366688888888888877763 67889999999876 4444455 4479999993 222 35778 78
Q ss_pred ceEEEeCcccc
Q 007481 146 AVLILDEADRL 156 (602)
Q Consensus 146 ~llVlDEah~l 156 (602)
.+||.-.....
T Consensus 391 ~~VI~~~~~k~ 401 (677)
T 3rc3_A 391 RRIIFYSLIKP 401 (677)
T ss_dssp SEEEESCSBC-
T ss_pred cEEEECCcccc
Confidence 89988877654
No 401
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=52.12 E-value=14 Score=37.39 Aligned_cols=45 Identities=22% Similarity=0.149 Sum_probs=28.5
Q ss_pred HHHHHhc------CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcCh
Q 007481 28 CIPLALT------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 78 (602)
Q Consensus 28 ~i~~~l~------g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Pt 78 (602)
.+..++. |.-+++.+|+|+|||..+ +.++..+... +.+++|+...
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLa-l~la~~~~~~-----g~~vlyi~~E 98 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVA-LHAVANAQAA-----GGIAAFIDAE 98 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHH-HHHHHHHHHT-----TCCEEEEESS
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHH-HHHHHHHHhC-----CCeEEEEECC
Confidence 4666776 355779999999999754 4444444332 2247777643
No 402
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=51.95 E-value=10 Score=38.61 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=17.7
Q ss_pred HHHHhcCCCEE--EEcCCCchHHHHH
Q 007481 29 IPLALTGRDIC--GSAITGSGKTAAF 52 (602)
Q Consensus 29 i~~~l~g~dvi--i~a~TGSGKT~a~ 52 (602)
+..+++|.|+. .-|+||||||...
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceeee
Confidence 34556787644 6899999999763
No 403
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=51.86 E-value=9.2 Score=39.74 Aligned_cols=25 Identities=48% Similarity=0.666 Sum_probs=19.5
Q ss_pred HHHHHhcCCCEE--EEcCCCchHHHHH
Q 007481 28 CIPLALTGRDIC--GSAITGSGKTAAF 52 (602)
Q Consensus 28 ~i~~~l~g~dvi--i~a~TGSGKT~a~ 52 (602)
.|..++.|.|+. .-|+||||||...
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 466777887754 6899999999763
No 404
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=51.77 E-value=7.9 Score=35.99 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=13.6
Q ss_pred CCEEEEcCCCchHHHH
Q 007481 36 RDICGSAITGSGKTAA 51 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a 51 (602)
..+.+.||+|||||+.
T Consensus 6 ~~i~i~G~~GsGKSTl 21 (227)
T 1cke_A 6 PVITIDGPSGAGKGTL 21 (227)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4577999999999975
No 405
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=51.74 E-value=8 Score=34.30 Aligned_cols=25 Identities=16% Similarity=0.077 Sum_probs=18.3
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLL 61 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~ 61 (602)
|.-+.+.+|.|+|||. ++-++..++
T Consensus 33 Ge~v~L~G~nGaGKTT--Llr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTT--LTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHH--HHHHHHHHT
T ss_pred CCEEEEECCCCCCHHH--HHHHHHHhC
Confidence 4556699999999997 355555554
No 406
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=51.71 E-value=12 Score=34.25 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=34.6
Q ss_pred CCeEEEEeCcHHHHHH-HHHHHhhc---CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcC
Q 007481 243 TSKVIIFSGTKQAAHR-LKILFGLA---ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 301 (602)
Q Consensus 243 ~~kvIIF~~s~~~a~~-l~~~L~~~---g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~ 301 (602)
..++||+|++...+.. +...+... ++.+..++|+.....+...+. +..+|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 5789999999998877 55544433 678888888765433221111 2467888884
No 407
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=51.69 E-value=10 Score=38.85 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=17.7
Q ss_pred HHHHhcCCCEE--EEcCCCchHHHHH
Q 007481 29 IPLALTGRDIC--GSAITGSGKTAAF 52 (602)
Q Consensus 29 i~~~l~g~dvi--i~a~TGSGKT~a~ 52 (602)
+..++.|-|+. .-|+||||||...
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 34556787654 6899999999763
No 408
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=51.68 E-value=6.4 Score=35.79 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=13.0
Q ss_pred CEEEEcCCCchHHHH
Q 007481 37 DICGSAITGSGKTAA 51 (602)
Q Consensus 37 dvii~a~TGSGKT~a 51 (602)
.+++.|++|||||+.
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 367999999999974
No 409
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=51.63 E-value=10 Score=38.60 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=18.0
Q ss_pred HHHHhcCCCEE--EEcCCCchHHHHH
Q 007481 29 IPLALTGRDIC--GSAITGSGKTAAF 52 (602)
Q Consensus 29 i~~~l~g~dvi--i~a~TGSGKT~a~ 52 (602)
+..++.|-|+. .-|+||||||...
T Consensus 85 v~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 85 LQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCceeEEEeeCCCCCCCceEE
Confidence 45566787754 6899999999763
No 410
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=51.61 E-value=6.5 Score=35.93 Aligned_cols=15 Identities=27% Similarity=0.175 Sum_probs=13.1
Q ss_pred CEEEEcCCCchHHHH
Q 007481 37 DICGSAITGSGKTAA 51 (602)
Q Consensus 37 dvii~a~TGSGKT~a 51 (602)
-+++.|++|||||+.
T Consensus 17 ~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477999999999975
No 411
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=51.56 E-value=10 Score=38.51 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=17.2
Q ss_pred HHHhcCCCEE--EEcCCCchHHHHH
Q 007481 30 PLALTGRDIC--GSAITGSGKTAAF 52 (602)
Q Consensus 30 ~~~l~g~dvi--i~a~TGSGKT~a~ 52 (602)
..++.|.|+. .-|+||||||...
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 74 DDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCcceEEEECCCCCCcceEe
Confidence 4456787644 6899999999763
No 412
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=51.54 E-value=11 Score=38.63 Aligned_cols=24 Identities=29% Similarity=0.630 Sum_probs=17.7
Q ss_pred HHHHhcCCCEE--EEcCCCchHHHHH
Q 007481 29 IPLALTGRDIC--GSAITGSGKTAAF 52 (602)
Q Consensus 29 i~~~l~g~dvi--i~a~TGSGKT~a~ 52 (602)
+..++.|-|+. .-|+||||||...
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 34556787644 6899999999763
No 413
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=51.53 E-value=6.6 Score=34.56 Aligned_cols=15 Identities=27% Similarity=0.226 Sum_probs=13.1
Q ss_pred CEEEEcCCCchHHHH
Q 007481 37 DICGSAITGSGKTAA 51 (602)
Q Consensus 37 dvii~a~TGSGKT~a 51 (602)
.+++.+++|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478999999999975
No 414
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=51.40 E-value=10 Score=38.43 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=17.9
Q ss_pred HHHHhcCCCEE--EEcCCCchHHHHH
Q 007481 29 IPLALTGRDIC--GSAITGSGKTAAF 52 (602)
Q Consensus 29 i~~~l~g~dvi--i~a~TGSGKT~a~ 52 (602)
+..++.|.|+. .-|+||||||...
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHcCCccceeeecCCCCCCCeEE
Confidence 44566787644 6899999999764
No 415
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=51.32 E-value=9.6 Score=35.22 Aligned_cols=25 Identities=28% Similarity=0.167 Sum_probs=17.3
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHHHcC
Q 007481 37 DICGSAITGSGKTAAFALPTLERLLYR 63 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l~~~ 63 (602)
-.+|.||+|||||.+ +-++..++..
T Consensus 25 ~~~I~G~NgsGKSti--l~ai~~~l~g 49 (203)
T 3qks_A 25 INLIIGQNGSGKSSL--LDAILVGLYW 49 (203)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHH--HHHHHHHhcC
Confidence 456899999999975 3444444443
No 416
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=51.31 E-value=6.3 Score=36.07 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=13.0
Q ss_pred CEEEEcCCCchHHHH
Q 007481 37 DICGSAITGSGKTAA 51 (602)
Q Consensus 37 dvii~a~TGSGKT~a 51 (602)
.+.+.|++|||||+.
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 467999999999974
No 417
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=51.28 E-value=15 Score=37.23 Aligned_cols=44 Identities=20% Similarity=0.186 Sum_probs=28.5
Q ss_pred HHHHHhc------CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcC
Q 007481 28 CIPLALT------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 77 (602)
Q Consensus 28 ~i~~~l~------g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~P 77 (602)
.+..++. |.-+++.+++|+|||..+ +.++..+... +.+++|+..
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLa-l~la~~~~~~-----g~~vlyid~ 99 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLT-LQVIAAAQRE-----GKTCAFIDA 99 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHH-HHHHHHHHHT-----TCCEEEEES
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHH-HHHHHHHHHC-----CCeEEEEeC
Confidence 4666664 356789999999999754 4444444332 224777765
No 418
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=51.22 E-value=5.9 Score=35.75 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCchHHHH
Q 007481 35 GRDICGSAITGSGKTAA 51 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a 51 (602)
|..+++.|++|||||..
T Consensus 13 ~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45678999999999975
No 419
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=51.17 E-value=6.4 Score=38.39 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=14.0
Q ss_pred CCEEEEcCCCchHHHH
Q 007481 36 RDICGSAITGSGKTAA 51 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a 51 (602)
+.+++.||+|+|||+.
T Consensus 45 ~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLL 60 (274)
T ss_dssp SEEEEESSTTSCHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 4589999999999974
No 420
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=50.67 E-value=57 Score=33.64 Aligned_cols=32 Identities=25% Similarity=0.200 Sum_probs=24.0
Q ss_pred CcHHHHHHHHHHhc---CCCEEEEcCCCchHHHHH
Q 007481 21 PTPIQAACIPLALT---GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 21 pt~~Q~~~i~~~l~---g~dvii~a~TGSGKT~a~ 52 (602)
|-..=.++|..++. |+.+.+.+|+|+|||...
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHHH
Confidence 33444566776664 889999999999999753
No 421
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=50.56 E-value=7 Score=35.22 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=15.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHHH
Q 007481 37 DICGSAITGSGKTAAFALPTLERLL 61 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l~ 61 (602)
-+.+.+++|||||+. +-++..++
T Consensus 4 ~v~IvG~SGsGKSTL--~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTL--ITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHH--HHHHHHHH
T ss_pred EEEEECCCCCCHHHH--HHHHHHHh
Confidence 356889999999974 33444443
No 422
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=50.19 E-value=9.1 Score=38.83 Aligned_cols=24 Identities=38% Similarity=0.670 Sum_probs=17.6
Q ss_pred HHHHhcCCCEE--EEcCCCchHHHHH
Q 007481 29 IPLALTGRDIC--GSAITGSGKTAAF 52 (602)
Q Consensus 29 i~~~l~g~dvi--i~a~TGSGKT~a~ 52 (602)
+..++.|-|+. .-|+||||||...
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 77 VQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHhcCCceeEEEEECCCCCCCcEec
Confidence 34456687644 6899999999764
No 423
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=50.19 E-value=17 Score=34.32 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=17.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHHHc
Q 007481 37 DICGSAITGSGKTAAFALPTLERLLY 62 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l~~ 62 (602)
++++.++.|+|||..+ +-+...+..
T Consensus 8 ~I~~~~kgGvGKTt~a-~~la~~l~~ 32 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAM-LQAAHAQLR 32 (228)
T ss_dssp EEEEESSTTSSHHHHH-HHHHHHHHH
T ss_pred EEEEECCCCCcHHHHH-HHHHHHHHH
Confidence 5789999999999874 444444443
No 424
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=50.16 E-value=7 Score=35.75 Aligned_cols=17 Identities=41% Similarity=0.503 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCchHHHH
Q 007481 35 GRDICGSAITGSGKTAA 51 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a 51 (602)
+.-+++.|+.|||||+.
T Consensus 4 ~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CeEEEEEcCCCCCHHHH
Confidence 45678999999999975
No 425
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=50.12 E-value=10 Score=38.69 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=17.8
Q ss_pred HHHHhcCCCEE--EEcCCCchHHHHH
Q 007481 29 IPLALTGRDIC--GSAITGSGKTAAF 52 (602)
Q Consensus 29 i~~~l~g~dvi--i~a~TGSGKT~a~ 52 (602)
+..++.|-|+. .-|+||||||...
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCCceEE
Confidence 34556787644 6899999999763
No 426
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=50.04 E-value=13 Score=39.84 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=25.3
Q ss_pred CcceEEEeCccccccC--CcHHHHHHHHHhCCCCcceeeeeccC
Q 007481 144 DLAVLILDEADRLLEL--GFSAEIHELVRLCPKRRQTMLFSATL 185 (602)
Q Consensus 144 ~l~llVlDEah~l~~~--gf~~~i~~i~~~~~~~~q~il~SAT~ 185 (602)
...+|||||+|.+... ++...+..++... ...+|+++++.
T Consensus 148 ~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 4568999999998753 2334555555442 34467777764
No 427
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=50.01 E-value=9.7 Score=37.95 Aligned_cols=14 Identities=29% Similarity=0.349 Sum_probs=12.3
Q ss_pred EEEEcCCCchHHHH
Q 007481 38 ICGSAITGSGKTAA 51 (602)
Q Consensus 38 vii~a~TGSGKT~a 51 (602)
+++.|+.|||||+.
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 57899999999974
No 428
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=50.00 E-value=10 Score=38.71 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=16.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHHHc
Q 007481 37 DICGSAITGSGKTAAFALPTLERLLY 62 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l~~ 62 (602)
-+.+.+|+|||||+. +..+..++.
T Consensus 159 vi~lvG~nGsGKTTl--l~~Lag~l~ 182 (359)
T 2og2_A 159 VIMIVGVNGGGKTTS--LGKLAHRLK 182 (359)
T ss_dssp EEEEECCTTSCHHHH--HHHHHHHHH
T ss_pred EEEEEcCCCChHHHH--HHHHHhhcc
Confidence 466999999999974 444444443
No 429
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=49.98 E-value=12 Score=39.92 Aligned_cols=49 Identities=10% Similarity=-0.077 Sum_probs=28.8
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcChHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 89 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Ptr~La~Q~~~~~ 89 (602)
|.-++|.|++|+|||.. ++-++..+.... +.+|+|+.-- +-..|+...+
T Consensus 242 G~l~li~G~pG~GKT~l-al~~a~~~a~~~----g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTF-VRQQALQWGTAM----GKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp TCEEEEEESSCHHHHHH-HHHHHHHHTTTS----CCCEEEEESS-SCHHHHHHHH
T ss_pred CeEEEEeecCCCCchHH-HHHHHHHHHHhc----CCcEEEEecc-CCHHHHHHHH
Confidence 45678999999999964 455554443321 2347777542 2233444443
No 430
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=49.84 E-value=7.2 Score=35.09 Aligned_cols=14 Identities=50% Similarity=0.608 Sum_probs=12.5
Q ss_pred EEEEcCCCchHHHH
Q 007481 38 ICGSAITGSGKTAA 51 (602)
Q Consensus 38 vii~a~TGSGKT~a 51 (602)
+++.|+.|||||+.
T Consensus 3 I~l~G~~GsGKsT~ 16 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQ 16 (195)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67999999999975
No 431
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=49.69 E-value=7 Score=37.65 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=13.7
Q ss_pred CCEEEEcCCCchHHHH
Q 007481 36 RDICGSAITGSGKTAA 51 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a 51 (602)
.-++++|++|||||..
T Consensus 5 ~lIvl~G~pGSGKSTl 20 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTF 20 (260)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred EEEEEEcCCCCCHHHH
Confidence 3578999999999975
No 432
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=49.68 E-value=9.3 Score=39.09 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=19.1
Q ss_pred HHHHHhcCCCEE--EEcCCCchHHHHH
Q 007481 28 CIPLALTGRDIC--GSAITGSGKTAAF 52 (602)
Q Consensus 28 ~i~~~l~g~dvi--i~a~TGSGKT~a~ 52 (602)
.+..++.|.|+. .-|+||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 456677887755 6899999999763
No 433
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=49.59 E-value=11 Score=38.65 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=17.1
Q ss_pred HHHhcCCCEE--EEcCCCchHHHHH
Q 007481 30 PLALTGRDIC--GSAITGSGKTAAF 52 (602)
Q Consensus 30 ~~~l~g~dvi--i~a~TGSGKT~a~ 52 (602)
..++.|.|+. .-|+||||||...
T Consensus 94 ~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 94 EEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCceEEEEeecCCCCCcceec
Confidence 4456787644 6899999999763
No 434
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=49.49 E-value=7.3 Score=42.71 Aligned_cols=15 Identities=20% Similarity=0.131 Sum_probs=13.9
Q ss_pred CEEEEcCCCchHHHH
Q 007481 37 DICGSAITGSGKTAA 51 (602)
Q Consensus 37 dvii~a~TGSGKT~a 51 (602)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999974
No 435
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=49.40 E-value=7.2 Score=35.77 Aligned_cols=18 Identities=28% Similarity=0.373 Sum_probs=15.2
Q ss_pred cCCCEEEEcCCCchHHHH
Q 007481 34 TGRDICGSAITGSGKTAA 51 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a 51 (602)
.+.-+++.|+.|||||+.
T Consensus 9 ~~~~I~l~G~~GsGKST~ 26 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQ 26 (212)
T ss_dssp CSCEEEEEESTTSSHHHH
T ss_pred cCCEEEEEcCCCCCHHHH
Confidence 356688999999999975
No 436
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=49.16 E-value=9 Score=35.16 Aligned_cols=17 Identities=41% Similarity=0.237 Sum_probs=14.0
Q ss_pred CCCEEEEcCCCchHHHH
Q 007481 35 GRDICGSAITGSGKTAA 51 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a 51 (602)
+.-+.+.|++|||||+.
T Consensus 21 ~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44577999999999974
No 437
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=49.07 E-value=40 Score=37.43 Aligned_cols=74 Identities=24% Similarity=0.317 Sum_probs=52.0
Q ss_pred cEEEEEcChHHHHHHHHHHHHHHhhc--------------------------------CCceEEEEECCCCHHHHHHHH-
Q 007481 70 IRVLILTPTRELAVQVHSMIEKIAQF--------------------------------TDIRCCLVVGGLSTKMQETAL- 116 (602)
Q Consensus 70 ~~vLiL~Ptr~La~Q~~~~~~~l~~~--------------------------------~~i~v~~~~g~~~~~~~~~~l- 116 (602)
.++||.||++.-+..++..+...... ....+..++|+.+...+...+
T Consensus 253 ~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~ 332 (715)
T 2va8_A 253 GQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEE 332 (715)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHH
Confidence 46999999999999998888764321 012478899999876665443
Q ss_pred ---cCCCcEEEECcHHHHHHHHccCCCCCCCcceEEE
Q 007481 117 ---RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLIL 150 (602)
Q Consensus 117 ---~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llVl 150 (602)
.+...|+|||. .+. .++++..+.+||-
T Consensus 333 ~f~~g~~~vlvaT~-----~l~--~Gidip~~~~VI~ 362 (715)
T 2va8_A 333 GFRQRKIKVIVATP-----TLA--AGVNLPARTVIIG 362 (715)
T ss_dssp HHHTTCSCEEEECG-----GGG--GSSCCCBSEEEEC
T ss_pred HHHcCCCeEEEECh-----HHh--cccCCCceEEEEe
Confidence 35679999992 222 2577888877554
No 438
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=48.93 E-value=8.9 Score=40.59 Aligned_cols=18 Identities=28% Similarity=0.145 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchHHHHH
Q 007481 35 GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~ 52 (602)
..++++.||+|+|||..+
T Consensus 201 ~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 468999999999999753
No 439
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=48.85 E-value=11 Score=38.39 Aligned_cols=19 Identities=37% Similarity=0.368 Sum_probs=15.2
Q ss_pred cCCC--EEEEcCCCchHHHHH
Q 007481 34 TGRD--ICGSAITGSGKTAAF 52 (602)
Q Consensus 34 ~g~d--vii~a~TGSGKT~a~ 52 (602)
.|.+ ++.-|+||||||...
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 3776 468999999999764
No 440
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=48.84 E-value=20 Score=32.21 Aligned_cols=22 Identities=18% Similarity=-0.053 Sum_probs=15.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHH
Q 007481 38 ICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 38 vii~a~TGSGKT~a~~l~il~~l 60 (602)
+.+.++.|||||.. +..++..+
T Consensus 7 i~i~G~sGsGKTTl-~~~L~~~l 28 (169)
T 1xjc_A 7 WQVVGYKHSGKTTL-MEKWVAAA 28 (169)
T ss_dssp EEEECCTTSSHHHH-HHHHHHHH
T ss_pred EEEECCCCCCHHHH-HHHHHHhh
Confidence 56899999999974 33444444
No 441
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=48.83 E-value=18 Score=29.50 Aligned_cols=37 Identities=8% Similarity=0.152 Sum_probs=32.5
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCC
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 278 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~ 278 (602)
...+++|+|.+-..+...+..|...|+++..|.|++.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 3568999999988899999999999999999999864
No 442
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=48.77 E-value=7.6 Score=35.66 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCchHHHH
Q 007481 34 TGRDICGSAITGSGKTAA 51 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a 51 (602)
.+.-+++.|+.|||||+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQ 25 (215)
T ss_dssp CCCEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356788999999999975
No 443
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=48.71 E-value=9.7 Score=35.42 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=12.9
Q ss_pred EEEEcCCCchHHHHH
Q 007481 38 ICGSAITGSGKTAAF 52 (602)
Q Consensus 38 vii~a~TGSGKT~a~ 52 (602)
+++.||+||||++.+
T Consensus 3 Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQA 17 (206)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999753
No 444
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=48.63 E-value=7.4 Score=36.06 Aligned_cols=15 Identities=20% Similarity=0.065 Sum_probs=13.1
Q ss_pred CEEEEcCCCchHHHH
Q 007481 37 DICGSAITGSGKTAA 51 (602)
Q Consensus 37 dvii~a~TGSGKT~a 51 (602)
.+++.|++|||||+.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQ 16 (214)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999975
No 445
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=48.51 E-value=11 Score=30.15 Aligned_cols=37 Identities=8% Similarity=0.130 Sum_probs=32.2
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCC
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 278 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~ 278 (602)
...+++|+|.+-..+...+..|...|+++..|.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 3568999999988899999999999998888988764
No 446
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=48.46 E-value=17 Score=40.26 Aligned_cols=75 Identities=17% Similarity=0.305 Sum_probs=48.6
Q ss_pred CcEEEEEcChHHHHHHHHHHHHHHh--hcCCceEEEEECC--------CCHHHHHHHH----cCCCcEEEECcHHHHHHH
Q 007481 69 AIRVLILTPTRELAVQVHSMIEKIA--QFTDIRCCLVVGG--------LSTKMQETAL----RSMPDIVVATPGRMIDHL 134 (602)
Q Consensus 69 ~~~vLiL~Ptr~La~Q~~~~~~~l~--~~~~i~v~~~~g~--------~~~~~~~~~l----~~~~~IvI~Tp~~L~~~l 134 (602)
+.++||.|+++..+..+++.+.... ...++.+..++|+ .+.......+ .+..+|+|+|. .+
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~-----~~ 474 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT-----VA 474 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-----SC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cc
Confidence 4579999999999999988887531 1236888899998 7765544333 34578999992 11
Q ss_pred HccCCCCCCCcceEEE
Q 007481 135 RNSMSVDLDDLAVLIL 150 (602)
Q Consensus 135 ~~~~~~~l~~l~llVl 150 (602)
...+++.++++||.
T Consensus 475 --~~GIDip~v~~VI~ 488 (699)
T 4gl2_A 475 --EEGLDIKECNIVIR 488 (699)
T ss_dssp --CTTSCCCSCCCCEE
T ss_pred --ccCCccccCCEEEE
Confidence 23577888888874
No 447
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=48.42 E-value=7.9 Score=34.98 Aligned_cols=14 Identities=43% Similarity=0.560 Sum_probs=12.5
Q ss_pred EEEEcCCCchHHHH
Q 007481 38 ICGSAITGSGKTAA 51 (602)
Q Consensus 38 vii~a~TGSGKT~a 51 (602)
+++.|+.|||||+.
T Consensus 3 I~l~G~~GsGKsT~ 16 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQ 16 (197)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999975
No 448
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=48.24 E-value=12 Score=38.59 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=17.8
Q ss_pred HHHHhcCCCE--EEEcCCCchHHHHH
Q 007481 29 IPLALTGRDI--CGSAITGSGKTAAF 52 (602)
Q Consensus 29 i~~~l~g~dv--ii~a~TGSGKT~a~ 52 (602)
+..++.|-|+ +.-|+||||||...
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEe
Confidence 4456678764 46899999999764
No 449
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=48.22 E-value=5.9 Score=35.39 Aligned_cols=18 Identities=28% Similarity=0.117 Sum_probs=10.9
Q ss_pred CCCEEEEcCCCchHHHHH
Q 007481 35 GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~ 52 (602)
+.-+++.|+.|||||..+
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999853
No 450
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=47.89 E-value=8.7 Score=36.57 Aligned_cols=18 Identities=22% Similarity=0.087 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCchHHHHH
Q 007481 35 GRDICGSAITGSGKTAAF 52 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~ 52 (602)
+..+++.||.|||||+..
T Consensus 29 ~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 346889999999999753
No 451
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=47.82 E-value=13 Score=29.43 Aligned_cols=35 Identities=11% Similarity=0.218 Sum_probs=30.9
Q ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCC
Q 007481 244 SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 278 (602)
Q Consensus 244 ~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~ 278 (602)
.+++|+|.+-..+...+..|...|+.+..|.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999988888999999999999888888864
No 452
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=47.52 E-value=8.3 Score=40.51 Aligned_cols=17 Identities=35% Similarity=0.354 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchHHHH
Q 007481 35 GRDICGSAITGSGKTAA 51 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a 51 (602)
.+++++.+|+|+|||..
T Consensus 50 ~~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEI 66 (444)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEEcCCCCCHHHH
Confidence 46899999999999975
No 453
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=47.21 E-value=19 Score=36.77 Aligned_cols=45 Identities=22% Similarity=0.164 Sum_probs=29.0
Q ss_pred HHHHHhc------CCCEEEEcCCCchHHHHHHHHHHHHHHcCCCCCCCcEEEEEcCh
Q 007481 28 CIPLALT------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 78 (602)
Q Consensus 28 ~i~~~l~------g~dvii~a~TGSGKT~a~~l~il~~l~~~~~~~~~~~vLiL~Pt 78 (602)
.+..++. |.-++|.+++|+|||.. .+.++..+... +.+|+|+..-
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtl-al~la~~~~~~-----g~~vlyi~~E 111 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTL-ALAIVAQAQKA-----GGTCAFIDAE 111 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHH-HHHHHHHHHHT-----TCCEEEEESS
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHH-HHHHHHHHHHC-----CCeEEEEECC
Confidence 4666665 35677999999999965 45555544432 2247777654
No 454
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=47.02 E-value=11 Score=37.43 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=16.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHHHc
Q 007481 37 DICGSAITGSGKTAAFALPTLERLLY 62 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l~~ 62 (602)
-+.|.||+|||||+. +-++..++.
T Consensus 92 ivgI~G~sGsGKSTL--~~~L~gll~ 115 (312)
T 3aez_A 92 IIGVAGSVAVGKSTT--ARVLQALLA 115 (312)
T ss_dssp EEEEECCTTSCHHHH--HHHHHHHHH
T ss_pred EEEEECCCCchHHHH--HHHHHhhcc
Confidence 455899999999974 445555543
No 455
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=46.95 E-value=11 Score=38.91 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=21.9
Q ss_pred CcHHHHHHHH--------HHhcCCCEE--EEcCCCchHHHHH
Q 007481 21 PTPIQAACIP--------LALTGRDIC--GSAITGSGKTAAF 52 (602)
Q Consensus 21 pt~~Q~~~i~--------~~l~g~dvi--i~a~TGSGKT~a~ 52 (602)
|..-|.+++. .++.|.|+. .-|+||||||...
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 3445666653 456787644 6899999999763
No 456
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=46.92 E-value=17 Score=40.26 Aligned_cols=70 Identities=17% Similarity=0.277 Sum_probs=49.0
Q ss_pred CeEEEEeCcHHHHHHHHHHHhhc----CCceeeccCCCCHHHHHHHHHHHhcCCceEEEEcCc-----cccc-c-CcCCc
Q 007481 244 SKVIIFSGTKQAAHRLKILFGLA----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----AARG-L-DIIGV 312 (602)
Q Consensus 244 ~kvIIF~~s~~~a~~l~~~L~~~----g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT~~-----~~~G-l-Dip~v 312 (602)
+++||.++++..+......+... ++.+..++|+.+...+...+. ...+|+|+|.- +..| + ++..+
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH----HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc----cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 78999999998888777666554 789999999886543322221 25889999942 2233 3 56778
Q ss_pred cEEEE
Q 007481 313 QTVIN 317 (602)
Q Consensus 313 ~~VI~ 317 (602)
++||.
T Consensus 138 ~~vVi 142 (696)
T 2ykg_A 138 TLMIF 142 (696)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88885
No 457
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=46.80 E-value=10 Score=30.52 Aligned_cols=37 Identities=8% Similarity=0.118 Sum_probs=32.0
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCC
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 278 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~ 278 (602)
...+++|+|.+-..+......|...|+++..|.|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 3568999999988899999999999999889988754
No 458
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=46.67 E-value=31 Score=34.40 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=16.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHc
Q 007481 38 ICGSAITGSGKTAAFALPTLERLLY 62 (602)
Q Consensus 38 vii~a~TGSGKT~a~~l~il~~l~~ 62 (602)
+.+.||+|||||+. +-.+..++.
T Consensus 95 igI~GpsGSGKSTl--~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTT--SRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHH--HHHHHHHHT
T ss_pred EEEECCCCCCHHHH--HHHHHHHhc
Confidence 45899999999974 455555554
No 459
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=46.34 E-value=11 Score=35.45 Aligned_cols=17 Identities=29% Similarity=0.214 Sum_probs=13.7
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
+-+++.||+||||++.+
T Consensus 30 kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp EEEEEECCTTCCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45678999999999753
No 460
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=46.30 E-value=10 Score=34.32 Aligned_cols=15 Identities=33% Similarity=0.293 Sum_probs=12.9
Q ss_pred CEEEEcCCCchHHHH
Q 007481 37 DICGSAITGSGKTAA 51 (602)
Q Consensus 37 dvii~a~TGSGKT~a 51 (602)
.+.+.+++|||||.+
T Consensus 10 ~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 10 IIGITGNIGSGKSTV 24 (203)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 366999999999975
No 461
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=46.28 E-value=14 Score=38.76 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=17.2
Q ss_pred HHHhcCCCEE--EEcCCCchHHHHH
Q 007481 30 PLALTGRDIC--GSAITGSGKTAAF 52 (602)
Q Consensus 30 ~~~l~g~dvi--i~a~TGSGKT~a~ 52 (602)
..++.|-|+. .-|+||||||...
T Consensus 130 ~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 130 DHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHhhcCCceEEEEeCCCCCCCCEEe
Confidence 4456787644 6899999999764
No 462
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=46.26 E-value=11 Score=35.82 Aligned_cols=17 Identities=24% Similarity=0.040 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCchHHHH
Q 007481 35 GRDICGSAITGSGKTAA 51 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a 51 (602)
+.-+++.||+|||||+.
T Consensus 27 ~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45688999999999974
No 463
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=46.26 E-value=8.6 Score=35.98 Aligned_cols=15 Identities=33% Similarity=0.306 Sum_probs=13.0
Q ss_pred CEEEEcCCCchHHHH
Q 007481 37 DICGSAITGSGKTAA 51 (602)
Q Consensus 37 dvii~a~TGSGKT~a 51 (602)
.+++.|++|||||+.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQ 16 (223)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 368999999999975
No 464
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=46.10 E-value=12 Score=36.76 Aligned_cols=14 Identities=43% Similarity=0.394 Sum_probs=12.0
Q ss_pred EEEEcCCCchHHHH
Q 007481 38 ICGSAITGSGKTAA 51 (602)
Q Consensus 38 vii~a~TGSGKT~a 51 (602)
+.|.|++|||||+.
T Consensus 34 i~I~G~sGsGKSTl 47 (290)
T 1odf_A 34 IFFSGPQGSGKSFT 47 (290)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 45899999999975
No 465
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=46.07 E-value=8.8 Score=35.67 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCchHHHH
Q 007481 35 GRDICGSAITGSGKTAA 51 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a 51 (602)
+..+++.|++|||||+.
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQ 21 (217)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 35688999999999975
No 466
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=45.95 E-value=11 Score=36.42 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=17.9
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
|.-+.+.+|+|||||+. +-++..+
T Consensus 46 Ge~~~i~G~nGsGKSTL--l~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTI--AKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHH--HHHHTTS
T ss_pred CCEEEEECCCCCCHHHH--HHHHhcc
Confidence 56778999999999973 4555443
No 467
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=45.94 E-value=6.7 Score=37.61 Aligned_cols=16 Identities=31% Similarity=0.329 Sum_probs=13.6
Q ss_pred CCEEEEcCCCchHHHH
Q 007481 36 RDICGSAITGSGKTAA 51 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a 51 (602)
..+++.|++|||||+.
T Consensus 33 ~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTI 48 (253)
T ss_dssp EEEEEESCGGGTTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3577999999999975
No 468
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=45.87 E-value=11 Score=36.01 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCchHHHH
Q 007481 35 GRDICGSAITGSGKTAA 51 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a 51 (602)
|.-+.|.||+|||||+.
T Consensus 27 g~~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 27 APVITVDGPSGAGKGTL 43 (252)
T ss_dssp SCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45677999999999975
No 469
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=45.55 E-value=11 Score=35.53 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=17.4
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
|.-+.+.||.|||||+ ++-++.-+
T Consensus 30 Ge~~~iiG~nGsGKST--Ll~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKST--LLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHH--HHHHHTTS
T ss_pred CCEEEEECCCCCCHHH--HHHHHhcC
Confidence 5667799999999997 34455433
No 470
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=45.49 E-value=8.2 Score=35.46 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=12.4
Q ss_pred EEEEcCCCchHHHH
Q 007481 38 ICGSAITGSGKTAA 51 (602)
Q Consensus 38 vii~a~TGSGKT~a 51 (602)
+++.|+.|||||+.
T Consensus 3 I~i~G~~GsGKsTl 16 (214)
T 1gtv_A 3 IAIEGVDGAGKRTL 16 (214)
T ss_dssp EEEEEEEEEEHHHH
T ss_pred EEEEcCCCCCHHHH
Confidence 67899999999974
No 471
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=45.38 E-value=11 Score=36.59 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=16.3
Q ss_pred hcCCCEEEEcCCCchHHHHH
Q 007481 33 LTGRDICGSAITGSGKTAAF 52 (602)
Q Consensus 33 l~g~dvii~a~TGSGKT~a~ 52 (602)
..|.-+++.||+|+|||+.+
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLA 47 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHH
Confidence 35677889999999999754
No 472
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=45.24 E-value=9.8 Score=36.19 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=17.1
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLER 59 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~ 59 (602)
|.-+.+.||+|||||+. +-++..
T Consensus 31 Ge~~~i~G~nGsGKSTL--l~~l~G 53 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSL--LSALLA 53 (237)
T ss_dssp TCEEEEECSTTSSHHHH--HHHHTT
T ss_pred CCEEEEECCCCCCHHHH--HHHHhc
Confidence 56677999999999973 444433
No 473
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=45.17 E-value=11 Score=35.32 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=18.3
Q ss_pred cCCCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 34 TGRDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 34 ~g~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
.|.-+.+.+|.|||||+. +-++.-+
T Consensus 34 ~Ge~~~iiG~NGsGKSTL--lk~l~Gl 58 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTL--LKTISTY 58 (214)
T ss_dssp TTCCEEEECCTTSSHHHH--HHHHTTS
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhcC
Confidence 367788999999999973 4454433
No 474
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=45.14 E-value=14 Score=38.88 Aligned_cols=68 Identities=7% Similarity=0.068 Sum_probs=45.1
Q ss_pred cEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHHcCCCcEEEECcHHHHHHHHccCCCCCCCcceEE
Q 007481 70 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 149 (602)
Q Consensus 70 ~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l~~~~~IvI~Tp~~L~~~l~~~~~~~l~~l~llV 149 (602)
.++||.||++.-+..+++.+... ++.+..+++............+..+|+|||. .+. ..+++.. ++||
T Consensus 191 ~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT~-----v~~--~GiDip~-~~VI 258 (459)
T 2z83_A 191 GKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYDTEYPKCKNGDWDFVITTD-----ISE--MGANFGA-SRVI 258 (459)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCCCCGGGSSSCCCSEEEESS-----CC-----CCCSC-SEEE
T ss_pred CCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHHHHHhhccCCCceEEEECC-----hHH--hCeecCC-CEEE
Confidence 46999999999999998888764 7788888886433222222245679999992 222 2456666 5554
No 475
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=44.88 E-value=19 Score=29.18 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=31.6
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCCc-eeeccCCCC
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGLAALK-AAELHGNLT 278 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~~g~~-~~~lhg~~~ 278 (602)
...+++|+|.+-..+......|...|+. +..|.|++.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 3468999999998899999999999995 888888764
No 476
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=44.77 E-value=9.4 Score=35.35 Aligned_cols=15 Identities=27% Similarity=0.293 Sum_probs=13.0
Q ss_pred CEEEEcCCCchHHHH
Q 007481 37 DICGSAITGSGKTAA 51 (602)
Q Consensus 37 dvii~a~TGSGKT~a 51 (602)
-+++.|+.|||||++
T Consensus 6 ~I~i~G~~GSGKST~ 20 (218)
T 1vht_A 6 IVALTGGIGSGKSTV 20 (218)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467999999999975
No 477
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=44.70 E-value=8.7 Score=40.78 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
+.+++.||+|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999753
No 478
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=44.54 E-value=14 Score=37.97 Aligned_cols=24 Identities=42% Similarity=0.648 Sum_probs=17.5
Q ss_pred HHHHhcCCCEE--EEcCCCchHHHHH
Q 007481 29 IPLALTGRDIC--GSAITGSGKTAAF 52 (602)
Q Consensus 29 i~~~l~g~dvi--i~a~TGSGKT~a~ 52 (602)
+..++.|-|+. .-|+||||||...
T Consensus 108 v~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 108 VQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhcCCCceEEEEeCCCCCCCceEe
Confidence 34456787644 6899999999763
No 479
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=43.53 E-value=15 Score=34.89 Aligned_cols=21 Identities=29% Similarity=0.151 Sum_probs=15.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHH
Q 007481 37 DICGSAITGSGKTAAFALPTLER 59 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~ 59 (602)
-+.+.||.|||||+. +-++..
T Consensus 27 iigI~G~~GsGKSTl--~k~L~~ 47 (245)
T 2jeo_A 27 LIGVSGGTASGKSTV--CEKIME 47 (245)
T ss_dssp EEEEECSTTSSHHHH--HHHHHH
T ss_pred EEEEECCCCCCHHHH--HHHHHH
Confidence 355899999999975 344444
No 480
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=43.53 E-value=11 Score=35.67 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=17.8
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
|.-+.+.+|.|||||+. +-++..+
T Consensus 34 Ge~~~i~G~nGsGKSTL--l~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSL--LMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHH--HHHHTTS
T ss_pred CCEEEEECCCCCCHHHH--HHHHhCC
Confidence 66777999999999973 4454443
No 481
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=43.36 E-value=9.8 Score=38.26 Aligned_cols=16 Identities=25% Similarity=0.142 Sum_probs=13.1
Q ss_pred CEEEEcCCCchHHHHH
Q 007481 37 DICGSAITGSGKTAAF 52 (602)
Q Consensus 37 dvii~a~TGSGKT~a~ 52 (602)
-.++.||+|+|||..+
T Consensus 25 ~~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3568999999999863
No 482
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=43.34 E-value=11 Score=37.35 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=18.0
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
|.-+.+.+|+|||||+. +-++..+
T Consensus 80 Ge~vaivG~sGsGKSTL--l~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTI--LRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHH--HHHHTTS
T ss_pred CCEEEEECCCCchHHHH--HHHHHcC
Confidence 56778999999999973 4555443
No 483
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=43.06 E-value=30 Score=40.80 Aligned_cols=65 Identities=20% Similarity=0.106 Sum_probs=50.2
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCceEEEEc-----Cccccc-cCcCCccEE
Q 007481 242 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT-----DVAARG-LDIIGVQTV 315 (602)
Q Consensus 242 ~~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~~~~eR~~il~~F~~g~~~iLVaT-----~~~~~G-lDip~v~~V 315 (602)
.+.++||.++++..+......|......+..++|+++. ++..+|+|+| +.+..+ ..+.++.+|
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lV 294 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITI-----------NPDAGCLVMTTEILRSMLYRGSEVMREVAWV 294 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCBC-----------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEE
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCcccc-----------CCCCCEEEeChHHHHHHHHcCccccccCCEE
Confidence 46799999999999999998888776689999998872 3678999999 344444 335677777
Q ss_pred EE
Q 007481 316 IN 317 (602)
Q Consensus 316 I~ 317 (602)
|.
T Consensus 295 VI 296 (1108)
T 3l9o_A 295 IF 296 (1108)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 484
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=43.01 E-value=5.1 Score=42.33 Aligned_cols=70 Identities=17% Similarity=0.304 Sum_probs=0.0
Q ss_pred CcEEEEEcChHHHHHHHHHHHHHHhhcCCceEEEEECCCCHHHHHHHH----cCCCcEEEECcHHHHHHHHccCCCCCCC
Q 007481 69 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 144 (602)
Q Consensus 69 ~~~vLiL~Ptr~La~Q~~~~~~~l~~~~~i~v~~~~g~~~~~~~~~~l----~~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 144 (602)
..++||.||++.-+..+++.+... ++.+..++|+.+.......+ .+..+|+|||. .+. ..+++.+
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-----~~~--~GlDip~ 401 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA--RGIDVEQ 401 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-----ccc--cCCcccc
Confidence 457999999999998888887764 67788889987654433322 34568999992 222 2466677
Q ss_pred cceEE
Q 007481 145 LAVLI 149 (602)
Q Consensus 145 l~llV 149 (602)
+.+||
T Consensus 402 v~~VI 406 (479)
T 3fmp_B 402 VSVVI 406 (479)
T ss_dssp -----
T ss_pred CCEEE
Confidence 77765
No 485
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=42.94 E-value=13 Score=34.08 Aligned_cols=15 Identities=27% Similarity=0.260 Sum_probs=12.7
Q ss_pred CEEEEcCCCchHHHH
Q 007481 37 DICGSAITGSGKTAA 51 (602)
Q Consensus 37 dvii~a~TGSGKT~a 51 (602)
-+.+.|++|||||+.
T Consensus 24 ~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTL 38 (201)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 466899999999974
No 486
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=42.88 E-value=13 Score=35.83 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=17.4
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
|.-+.+.||+|||||+. +-++.-+
T Consensus 41 Gei~~l~G~NGsGKSTL--lk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTT--LRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHH--HHHHTTS
T ss_pred CcEEEEECCCCCCHHHH--HHHHhcC
Confidence 56677999999999973 4454433
No 487
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=42.85 E-value=13 Score=30.25 Aligned_cols=35 Identities=9% Similarity=0.159 Sum_probs=30.8
Q ss_pred CCeEEEEeCcHHHHHHHHHHHhhcCCceeeccCCC
Q 007481 243 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNL 277 (602)
Q Consensus 243 ~~kvIIF~~s~~~a~~l~~~L~~~g~~~~~lhg~~ 277 (602)
..+++|+|.+-..+...+..|...|+++..|.|++
T Consensus 56 ~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 56899999998888889999999999988888875
No 488
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=42.80 E-value=16 Score=32.89 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=15.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHHH
Q 007481 37 DICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 37 dvii~a~TGSGKT~a~~l~il~~l 60 (602)
-+++.++.|||||.. +-.++..+
T Consensus 8 ~i~i~G~sGsGKTTl-~~~l~~~l 30 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL-LKKLIPAL 30 (174)
T ss_dssp EEEEECCTTSCHHHH-HHHHHHHH
T ss_pred EEEEEeCCCCCHHHH-HHHHHHhc
Confidence 466899999999964 33344433
No 489
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=42.77 E-value=11 Score=36.04 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=17.9
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
|.-+.+.||+|||||+. +-++..+
T Consensus 35 Ge~~~i~G~nGsGKSTL--l~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTL--TKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHH--HHHHTTS
T ss_pred CCEEEEECCCCCCHHHH--HHHHhcC
Confidence 56677999999999973 4555443
No 490
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=42.66 E-value=23 Score=29.65 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=30.8
Q ss_pred CeEEEEe-CcHHHHHHHHHHHhhcCCceeeccCCCCH
Q 007481 244 SKVIIFS-GTKQAAHRLKILFGLAALKAAELHGNLTQ 279 (602)
Q Consensus 244 ~kvIIF~-~s~~~a~~l~~~L~~~g~~~~~lhg~~~~ 279 (602)
.++||+| .+-..+..+...|...|+++..|.|++..
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 6899999 57777888899999999999999998754
No 491
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=42.60 E-value=11 Score=36.83 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=17.1
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLER 59 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~ 59 (602)
|.-+.+.||+|||||+. +-++.-
T Consensus 34 Ge~~~iiGpnGsGKSTL--l~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTL--FQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHH--HHHHTT
T ss_pred CCEEEEECCCCCCHHHH--HHHHHc
Confidence 56677999999999973 455443
No 492
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=42.44 E-value=13 Score=35.94 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=17.6
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
|.-+.+.||.|||||+ ++-++.-+
T Consensus 50 Gei~~liG~NGsGKST--Llk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKST--FLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHH--HHHHHTTS
T ss_pred CCEEEEEcCCCCcHHH--HHHHHHcC
Confidence 5567799999999997 35555444
No 493
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=42.37 E-value=11 Score=34.53 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=12.6
Q ss_pred EEEEcCCCchHHHHH
Q 007481 38 ICGSAITGSGKTAAF 52 (602)
Q Consensus 38 vii~a~TGSGKT~a~ 52 (602)
+.+.|++|||||++.
T Consensus 15 IgltG~~GSGKSTva 29 (192)
T 2grj_A 15 IGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 558999999999753
No 494
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=42.35 E-value=13 Score=36.05 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=17.9
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
|.-+.+.||.|||||+ ++-++.-+
T Consensus 45 Ge~~~i~G~nGsGKST--Llk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKST--VAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHH--HHHHHTTS
T ss_pred CCEEEEECCCCCCHHH--HHHHHhcC
Confidence 5667799999999997 35555444
No 495
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=41.95 E-value=12 Score=36.11 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=17.5
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
|.-+.+.||+|||||+ ++-++.-+
T Consensus 33 Ge~~~liG~nGsGKST--Llk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKST--LINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHH--HHHHHTTS
T ss_pred CCEEEEECCCCCCHHH--HHHHHhCC
Confidence 5667799999999997 34454433
No 496
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=41.73 E-value=12 Score=35.63 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=17.7
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
|.-+.+.+|.|||||+ ++-++.-+
T Consensus 32 Ge~~~l~G~nGsGKST--Ll~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTT--TLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHH--HHHHHTTS
T ss_pred CCEEEEECCCCCCHHH--HHHHHhCC
Confidence 5667799999999997 34555443
No 497
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=41.69 E-value=11 Score=36.87 Aligned_cols=16 Identities=31% Similarity=0.212 Sum_probs=13.4
Q ss_pred CEEEEcCCCchHHHHH
Q 007481 37 DICGSAITGSGKTAAF 52 (602)
Q Consensus 37 dvii~a~TGSGKT~a~ 52 (602)
-+++.|++|||||+..
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3679999999999853
No 498
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=41.58 E-value=15 Score=37.24 Aligned_cols=17 Identities=29% Similarity=-0.019 Sum_probs=13.9
Q ss_pred CCEEEEcCCCchHHHHH
Q 007481 36 RDICGSAITGSGKTAAF 52 (602)
Q Consensus 36 ~dvii~a~TGSGKT~a~ 52 (602)
.-+.+.+|+|||||..+
T Consensus 132 ~i~~I~G~~GsGKTTL~ 148 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLA 148 (349)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45669999999999753
No 499
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=41.42 E-value=14 Score=36.11 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=17.5
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHHH
Q 007481 35 GRDICGSAITGSGKTAAFALPTLERL 60 (602)
Q Consensus 35 g~dvii~a~TGSGKT~a~~l~il~~l 60 (602)
|.-+.+.||.|||||+ ++-++.-+
T Consensus 47 Ge~~~liG~NGsGKST--Llk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTT--LLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHH--HHHHHTTS
T ss_pred CCEEEEECCCCCcHHH--HHHHHhCC
Confidence 5667799999999997 34454433
No 500
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=41.21 E-value=88 Score=32.94 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=20.8
Q ss_pred HHHHHHh---cCCCEEEEcCCCchHHHH
Q 007481 27 ACIPLAL---TGRDICGSAITGSGKTAA 51 (602)
Q Consensus 27 ~~i~~~l---~g~dvii~a~TGSGKT~a 51 (602)
++|..++ .|+.+.|.++.|.|||..
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L 169 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVL 169 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHH
T ss_pred EEEecccccccCCeeeeecCCCCChHHH
Confidence 6666665 488999999999999975
Done!