Query 007482
Match_columns 602
No_of_seqs 344 out of 2981
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 11:11:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007482.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007482hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02522 ATP citrate (pro-S)-l 100.0 1E-142 3E-147 1181.8 53.7 602 1-602 1-608 (608)
2 KOG1254 ATP-citrate lyase [Ene 100.0 4.8E-80 1.1E-84 643.6 21.0 599 3-602 2-600 (600)
3 TIGR02717 AcCoA-syn-alpha acet 100.0 6.8E-67 1.5E-71 572.0 28.5 333 3-367 1-348 (447)
4 PRK05678 succinyl-CoA syntheta 100.0 1.5E-64 3.3E-69 520.9 32.2 283 4-311 2-291 (291)
5 TIGR01019 sucCoAalpha succinyl 100.0 1.8E-64 3.9E-69 519.2 30.6 278 5-307 1-285 (286)
6 PLN00125 Succinyl-CoA ligase [ 100.0 2E-64 4.4E-69 520.5 29.8 280 5-310 7-296 (300)
7 PTZ00187 succinyl-CoA syntheta 100.0 5.5E-62 1.2E-66 503.6 32.1 283 4-311 23-316 (317)
8 COG1042 Acyl-CoA synthetase (N 100.0 2.3E-54 5E-59 480.9 27.2 336 1-367 2-352 (598)
9 COG0372 GltA Citrate synthase 100.0 1.1E-54 2.4E-59 460.0 20.3 243 331-600 128-379 (390)
10 COG0074 SucD Succinyl-CoA synt 100.0 6.5E-52 1.4E-56 413.1 29.4 285 5-310 3-291 (293)
11 cd06101 citrate_synt Citrate s 100.0 1.7E-53 3.6E-58 434.9 16.2 222 348-587 10-255 (265)
12 PRK12350 citrate synthase 2; P 100.0 6.9E-53 1.5E-57 443.3 19.8 227 339-593 103-344 (353)
13 cd06102 citrate_synt_like_2 Ci 100.0 4.4E-53 9.6E-58 432.8 15.2 228 344-593 18-280 (282)
14 cd06109 BsCS-I_like Bacillus s 100.0 4.4E-52 9.4E-57 438.8 20.9 234 331-592 102-346 (349)
15 PRK06224 citrate synthase; Pro 100.0 2.3E-52 5E-57 426.9 16.2 240 344-601 6-255 (263)
16 cd06115 AthCS_per_like Arabido 100.0 2.3E-51 4.9E-56 440.0 20.1 229 339-593 153-400 (410)
17 PRK14035 citrate synthase; Pro 100.0 4.9E-51 1.1E-55 433.3 20.9 233 332-593 117-357 (371)
18 cd06116 CaCS_like Chloroflexus 100.0 4.6E-51 1E-55 435.2 19.8 230 338-593 125-373 (384)
19 PRK14036 citrate synthase; Pro 100.0 1.5E-50 3.3E-55 430.7 23.3 229 339-593 124-362 (377)
20 PRK12351 methylcitrate synthas 100.0 7.2E-51 1.6E-55 432.5 19.1 235 330-593 121-364 (378)
21 PRK14034 citrate synthase; Pro 100.0 1E-50 2.2E-55 430.9 20.2 233 332-593 117-357 (372)
22 cd06108 Ec2MCS_like Escherichi 100.0 1.1E-50 2.4E-55 429.5 19.6 233 332-593 111-352 (363)
23 cd06100 CCL_ACL-C Citryl-CoA l 100.0 2.7E-50 5.9E-55 403.8 19.3 220 363-600 1-227 (227)
24 cd06117 Ec2MCS_like_1 Subgroup 100.0 2.1E-50 4.5E-55 428.2 19.3 233 332-593 114-355 (366)
25 TIGR01798 cit_synth_I citrate 100.0 5E-50 1.1E-54 429.9 21.9 230 338-593 152-404 (412)
26 cd06107 EcCS_AthCS-per_like Es 100.0 2.5E-50 5.5E-55 429.3 18.8 222 339-586 133-368 (382)
27 cd06111 DsCS_like Cold-active 100.0 1.1E-49 2.4E-54 422.8 20.8 228 339-593 119-354 (362)
28 PRK05614 gltA type II citrate 100.0 9E-50 1.9E-54 429.2 20.2 230 338-593 165-416 (419)
29 cd06112 citrate_synt_like_1_1 100.0 8E-50 1.7E-54 425.5 19.1 229 339-593 123-362 (373)
30 PRK14037 citrate synthase; Pro 100.0 1.4E-49 2.9E-54 423.5 20.7 234 332-593 117-363 (377)
31 cd06099 CS_ACL-C_CCL Citrate s 100.0 1.3E-49 2.9E-54 394.4 19.0 195 375-587 2-203 (213)
32 PLN02456 citrate synthase 100.0 1.1E-49 2.4E-54 431.5 19.8 229 339-593 192-440 (455)
33 PRK14033 citrate synthase; Pro 100.0 2.6E-49 5.7E-54 421.4 20.1 229 338-593 128-364 (375)
34 cd06106 ScCit3_like Saccharomy 100.0 2.5E-49 5.5E-54 425.3 20.2 231 339-595 172-422 (428)
35 cd06114 EcCS_like Escherichia 100.0 3.7E-49 8E-54 423.1 20.6 229 339-593 148-398 (400)
36 cd06103 ScCS-like Saccharomyce 100.0 3.8E-49 8.3E-54 424.2 20.3 230 339-595 173-420 (426)
37 TIGR01800 cit_synth_II 2-methy 100.0 5E-49 1.1E-53 419.4 20.2 229 338-593 118-354 (368)
38 cd06110 BSuCS-II_like Bacillus 100.0 1.7E-48 3.7E-53 414.2 23.4 228 339-593 119-354 (356)
39 PRK12349 citrate synthase 3; P 100.0 5E-49 1.1E-53 418.8 19.2 234 332-593 120-361 (369)
40 cd06105 ScCit1-2_like Saccharo 100.0 8.1E-49 1.8E-53 421.3 20.1 233 333-594 168-417 (427)
41 TIGR01793 cit_synth_euk citrat 100.0 9E-49 1.9E-53 420.4 19.4 234 332-595 170-421 (427)
42 cd06118 citrate_synt_like_1 Ci 100.0 9.9E-49 2.1E-53 416.5 19.2 223 339-587 119-348 (358)
43 PRK14032 citrate synthase; Pro 100.0 2.4E-48 5.3E-53 420.7 20.4 231 338-593 169-434 (447)
44 PRK09569 type I citrate syntha 100.0 2.8E-48 6.1E-53 418.2 19.9 227 339-593 175-423 (437)
45 PF00285 Citrate_synt: Citrate 100.0 6.8E-49 1.5E-53 418.0 14.6 230 338-592 118-355 (356)
46 cd06113 citrate_synt_like_1_2 100.0 2.8E-48 6E-53 417.1 18.5 235 332-593 135-404 (406)
47 KOG1255 Succinyl-CoA synthetas 100.0 5.5E-45 1.2E-49 352.1 25.1 283 6-309 34-324 (329)
48 PRK06091 membrane protein FdrA 100.0 2.7E-40 5.8E-45 360.0 22.6 209 56-309 101-317 (555)
49 PF13607 Succ_CoA_lig: Succiny 100.0 1.6E-41 3.5E-46 314.0 10.8 137 161-306 1-137 (138)
50 KOG2617 Citrate synthase [Ener 100.0 1.2E-32 2.5E-37 283.8 15.1 233 332-593 191-438 (458)
51 PF13380 CoA_binding_2: CoA bi 99.8 6.7E-19 1.5E-23 158.8 7.4 110 10-138 1-116 (116)
52 PF00549 Ligase_CoA: CoA-ligas 98.9 5.8E-09 1.3E-13 98.4 9.6 121 167-305 1-151 (153)
53 COG1832 Predicted CoA-binding 98.8 7E-09 1.5E-13 94.5 7.1 112 6-135 13-131 (140)
54 PF02629 CoA_binding: CoA bind 98.7 7E-08 1.5E-12 84.1 9.6 89 9-107 2-96 (96)
55 PF01113 DapB_N: Dihydrodipico 98.1 1.2E-05 2.7E-10 73.3 8.4 113 11-131 2-123 (124)
56 TIGR00036 dapB dihydrodipicoli 97.9 6E-05 1.3E-09 77.8 11.1 121 11-136 3-132 (266)
57 COG0289 DapB Dihydrodipicolina 97.8 0.00029 6.4E-09 71.6 12.1 119 9-135 2-130 (266)
58 TIGR02717 AcCoA-syn-alpha acet 97.7 0.009 1.9E-07 66.4 23.6 209 62-308 190-444 (447)
59 PRK00696 sucC succinyl-CoA syn 97.5 0.00088 1.9E-08 72.9 12.7 123 161-307 256-384 (388)
60 PRK00048 dihydrodipicolinate r 97.5 0.00064 1.4E-08 69.9 10.8 116 9-135 1-121 (257)
61 TIGR01016 sucCoAbeta succinyl- 97.5 0.0011 2.3E-08 72.2 12.6 122 160-305 255-382 (386)
62 PF01408 GFO_IDH_MocA: Oxidore 97.3 0.00072 1.6E-08 60.4 6.9 110 11-127 2-116 (120)
63 PLN02775 Probable dihydrodipic 97.3 0.0034 7.3E-08 65.2 12.6 120 8-136 9-141 (286)
64 PRK14046 malate--CoA ligase su 97.3 0.0025 5.3E-08 69.5 12.2 125 160-308 255-385 (392)
65 PRK13303 L-aspartate dehydroge 97.0 0.0028 6.2E-08 65.4 9.2 119 10-136 2-126 (265)
66 TIGR02130 dapB_plant dihydrodi 97.0 0.0075 1.6E-07 62.3 11.7 113 13-136 3-130 (275)
67 PRK12349 citrate synthase 3; P 96.9 0.0023 5E-08 69.2 8.1 89 347-439 15-105 (369)
68 PLN00124 succinyl-CoA ligase [ 96.8 0.022 4.7E-07 62.7 13.9 121 160-304 290-416 (422)
69 COG0045 SucC Succinyl-CoA synt 96.7 0.026 5.7E-07 60.3 13.7 168 113-307 179-383 (387)
70 PRK13304 L-aspartate dehydroge 96.6 0.0053 1.1E-07 63.4 7.7 112 10-130 2-119 (265)
71 cd06118 citrate_synt_like_1 Ci 96.6 0.0068 1.5E-07 65.4 8.5 87 347-439 9-99 (358)
72 PRK13302 putative L-aspartate 96.6 0.0066 1.4E-07 62.9 8.1 120 7-136 4-129 (271)
73 PF03446 NAD_binding_2: NAD bi 96.4 0.0057 1.2E-07 58.3 5.9 111 10-129 2-117 (163)
74 PRK14037 citrate synthase; Pro 96.4 0.007 1.5E-07 65.6 7.3 87 347-439 14-104 (377)
75 PRK14036 citrate synthase; Pro 96.4 0.0084 1.8E-07 65.0 7.9 87 347-439 14-104 (377)
76 cd06112 citrate_synt_like_1_1 96.4 0.0073 1.6E-07 65.4 7.3 89 348-440 12-102 (373)
77 TIGR01800 cit_synth_II 2-methy 96.3 0.011 2.4E-07 64.0 7.7 59 345-404 7-67 (368)
78 COG0673 MviM Predicted dehydro 96.1 0.021 4.5E-07 60.3 8.8 116 8-132 2-127 (342)
79 cd06108 Ec2MCS_like Escherichi 96.1 0.017 3.7E-07 62.2 8.0 105 348-456 10-121 (363)
80 cd06110 BSuCS-II_like Bacillus 96.0 0.016 3.4E-07 62.6 7.5 87 346-438 8-98 (356)
81 cd06111 DsCS_like Cold-active 96.0 0.017 3.7E-07 62.3 7.6 86 348-439 10-99 (362)
82 PRK11579 putative oxidoreducta 96.0 0.047 1E-06 58.4 10.8 114 9-131 4-123 (346)
83 TIGR01761 thiaz-red thiazoliny 95.9 0.028 6.1E-07 60.3 8.7 110 8-128 2-119 (343)
84 PRK12351 methylcitrate synthas 95.9 0.026 5.6E-07 61.2 8.4 87 348-440 19-109 (378)
85 cd06115 AthCS_per_like Arabido 95.8 0.027 5.8E-07 61.7 7.8 87 347-439 35-125 (410)
86 cd06113 citrate_synt_like_1_2 95.7 0.0067 1.4E-07 66.4 3.1 81 358-442 37-123 (406)
87 cd06117 Ec2MCS_like_1 Subgroup 95.7 0.034 7.3E-07 60.1 8.4 86 348-439 10-99 (366)
88 cd06109 BsCS-I_like Bacillus s 95.7 0.032 6.9E-07 59.9 8.0 102 348-456 10-113 (349)
89 PRK14033 citrate synthase; Pro 95.7 0.029 6.2E-07 60.9 7.7 92 344-439 16-109 (375)
90 cd06116 CaCS_like Chloroflexus 95.6 0.03 6.6E-07 60.8 7.4 88 348-439 16-105 (384)
91 COG2084 MmsB 3-hydroxyisobutyr 95.5 0.094 2E-06 54.7 10.3 116 10-134 1-124 (286)
92 PRK14035 citrate synthase; Pro 95.4 0.034 7.4E-07 60.2 7.2 87 348-439 14-102 (371)
93 PRK10206 putative oxidoreducta 95.4 0.078 1.7E-06 56.8 9.7 110 11-127 3-118 (344)
94 PRK14034 citrate synthase; Pro 95.4 0.048 1E-06 59.0 8.0 85 349-439 15-102 (372)
95 cd06107 EcCS_AthCS-per_like Es 95.3 0.055 1.2E-06 58.8 8.2 88 347-440 15-106 (382)
96 TIGR01798 cit_synth_I citrate 95.3 0.04 8.7E-07 60.4 7.0 86 348-439 43-132 (412)
97 TIGR03855 NAD_NadX aspartate d 95.2 0.05 1.1E-06 55.1 7.1 80 54-137 21-103 (229)
98 COG2344 AT-rich DNA-binding pr 95.2 0.038 8.1E-07 53.7 5.8 87 11-106 86-179 (211)
99 PRK14032 citrate synthase; Pro 95.1 0.013 2.9E-07 64.8 2.9 80 358-441 67-152 (447)
100 PRK12490 6-phosphogluconate de 95.1 0.086 1.9E-06 55.3 8.8 111 11-127 2-115 (299)
101 cd06105 ScCit1-2_like Saccharo 95.1 0.18 3.9E-06 55.5 11.5 90 345-440 44-145 (427)
102 PRK09569 type I citrate syntha 94.9 0.098 2.1E-06 57.8 8.8 90 346-438 47-145 (437)
103 PRK09599 6-phosphogluconate de 94.9 0.09 1.9E-06 55.2 8.2 113 10-128 1-116 (301)
104 PLN02350 phosphogluconate dehy 94.7 0.13 2.9E-06 57.7 9.5 120 10-132 7-133 (493)
105 PLN02456 citrate synthase 94.7 0.08 1.7E-06 58.8 7.7 87 347-439 74-164 (455)
106 PRK05479 ketol-acid reductoiso 94.6 0.21 4.6E-06 53.2 10.3 95 6-111 14-113 (330)
107 PLN02235 ATP citrate (pro-S)-l 94.5 0.32 7E-06 53.3 11.3 127 160-306 268-414 (423)
108 PTZ00142 6-phosphogluconate de 94.4 0.16 3.4E-06 56.9 9.1 118 11-131 3-126 (470)
109 PRK05614 gltA type II citrate 94.4 0.15 3.2E-06 56.1 8.6 87 347-439 55-145 (419)
110 PRK15059 tartronate semialdehy 94.3 0.18 3.8E-06 52.9 8.8 108 11-129 2-116 (292)
111 PRK05472 redox-sensing transcr 94.3 0.17 3.7E-06 50.4 8.2 92 7-106 82-179 (213)
112 cd06114 EcCS_like Escherichia 94.3 0.11 2.3E-06 57.0 7.2 87 347-439 37-127 (400)
113 cd06103 ScCS-like Saccharomyce 94.2 0.23 5.1E-06 54.7 9.7 91 345-440 44-145 (426)
114 COG0059 IlvC Ketol-acid reduct 94.1 0.076 1.6E-06 55.3 5.2 95 6-110 15-113 (338)
115 PRK06091 membrane protein FdrA 94.1 14 0.00029 42.2 23.4 249 7-309 191-494 (555)
116 TIGR00872 gnd_rel 6-phosphoglu 93.9 0.18 3.8E-06 53.0 7.8 113 10-129 1-116 (298)
117 cd06106 ScCit3_like Saccharomy 93.8 0.23 4.9E-06 54.8 8.5 93 344-440 43-145 (428)
118 TIGR01692 HIBADH 3-hydroxyisob 93.7 0.19 4E-06 52.4 7.5 100 21-129 10-113 (288)
119 PF07991 IlvN: Acetohydroxy ac 93.6 0.074 1.6E-06 50.8 3.8 92 8-110 3-99 (165)
120 TIGR01921 DAP-DH diaminopimela 93.5 0.56 1.2E-05 49.9 10.7 111 9-129 3-118 (324)
121 PRK13403 ketol-acid reductoiso 93.3 0.26 5.7E-06 52.3 7.7 94 6-110 13-110 (335)
122 TIGR00873 gnd 6-phosphoglucona 93.0 0.37 8.1E-06 53.9 8.9 115 12-130 2-122 (467)
123 TIGR01505 tartro_sem_red 2-hyd 93.0 0.4 8.6E-06 49.9 8.6 110 11-129 1-116 (291)
124 COG1712 Predicted dinucleotide 92.8 0.73 1.6E-05 46.3 9.5 112 11-130 2-118 (255)
125 PRK13301 putative L-aspartate 92.8 0.61 1.3E-05 48.1 9.3 112 10-130 3-120 (267)
126 TIGR01793 cit_synth_euk citrat 92.6 0.093 2E-06 57.7 3.4 93 341-439 43-147 (427)
127 PRK11559 garR tartronate semia 92.6 0.47 1E-05 49.4 8.6 109 10-127 3-117 (296)
128 TIGR00465 ilvC ketol-acid redu 92.1 0.44 9.5E-06 50.6 7.6 115 9-135 3-121 (314)
129 PF00285 Citrate_synt: Citrate 91.8 0.038 8.2E-07 59.6 -0.8 84 349-438 10-97 (356)
130 PRK15461 NADH-dependent gamma- 91.8 0.73 1.6E-05 48.3 8.9 109 11-128 3-117 (296)
131 PRK14618 NAD(P)H-dependent gly 91.7 0.32 7E-06 51.6 6.1 117 9-132 4-137 (328)
132 PF02593 dTMP_synthase: Thymid 91.6 1.7 3.6E-05 43.7 10.5 101 18-132 8-111 (217)
133 PRK09287 6-phosphogluconate de 91.1 0.81 1.8E-05 51.1 8.7 111 19-132 2-115 (459)
134 PLN02819 lysine-ketoglutarate 90.9 0.82 1.8E-05 55.7 9.0 106 57-174 632-739 (1042)
135 PRK06349 homoserine dehydrogen 90.6 1.5 3.2E-05 48.5 10.2 73 54-128 55-127 (426)
136 PRK07634 pyrroline-5-carboxyla 90.3 0.85 1.8E-05 46.0 7.4 97 8-111 3-105 (245)
137 TIGR03570 NeuD_NnaD sugar O-ac 88.6 3.2 7E-05 39.8 9.8 87 12-105 2-91 (201)
138 COG1042 Acyl-CoA synthetase (N 87.7 0.81 1.8E-05 52.6 5.5 177 53-270 306-490 (598)
139 TIGR01501 MthylAspMutase methy 87.7 3.5 7.6E-05 38.3 8.7 61 72-132 52-119 (134)
140 cd02072 Glm_B12_BD B12 binding 87.1 4.4 9.4E-05 37.4 8.9 61 72-132 50-117 (128)
141 PRK07680 late competence prote 87.0 1.4 3E-05 45.4 6.4 93 11-110 2-101 (273)
142 PLN02858 fructose-bisphosphate 86.9 2 4.3E-05 54.3 8.8 110 9-128 4-122 (1378)
143 COG2185 Sbm Methylmalonyl-CoA 86.9 5.3 0.00012 37.4 9.5 57 72-132 63-124 (143)
144 PLN03139 formate dehydrogenase 86.7 4.4 9.5E-05 44.3 10.3 110 7-126 197-311 (386)
145 TIGR00640 acid_CoA_mut_C methy 86.7 3.6 7.8E-05 38.0 8.3 64 63-132 46-114 (132)
146 KOG0409 Predicted dehydrogenas 86.5 3.5 7.7E-05 43.2 8.8 191 10-213 36-243 (327)
147 cd07022 S49_Sppa_36K_type Sign 86.1 1.6 3.4E-05 43.6 6.0 54 202-256 28-85 (214)
148 PRK00094 gpsA NAD(P)H-dependen 85.9 1.1 2.5E-05 46.9 5.2 107 10-122 2-122 (325)
149 PRK15469 ghrA bifunctional gly 85.5 4.3 9.2E-05 43.1 9.2 107 8-126 135-246 (312)
150 COG0240 GpsA Glycerol-3-phosph 85.0 5.6 0.00012 42.4 9.7 107 9-121 1-121 (329)
151 PRK06545 prephenate dehydrogen 84.9 3.6 7.9E-05 44.3 8.6 111 10-130 1-118 (359)
152 PRK12439 NAD(P)H-dependent gly 84.8 2.7 5.8E-05 45.0 7.4 51 57-111 65-117 (341)
153 PF10087 DUF2325: Uncharacteri 84.6 7 0.00015 33.8 8.7 81 11-109 1-87 (97)
154 cd07018 S49_SppA_67K_type Sign 84.5 1.3 2.8E-05 44.5 4.6 50 203-253 33-87 (222)
155 PRK12350 citrate synthase 2; P 84.5 0.4 8.7E-06 51.6 0.9 44 348-392 12-57 (353)
156 PRK07574 formate dehydrogenase 84.0 5.4 0.00012 43.6 9.4 110 7-126 190-304 (385)
157 PLN02256 arogenate dehydrogena 83.9 3.9 8.4E-05 43.2 8.1 75 9-93 36-112 (304)
158 PRK13243 glyoxylate reductase; 83.3 4.6 0.0001 43.2 8.4 109 7-126 148-260 (333)
159 PRK08410 2-hydroxyacid dehydro 83.2 3.5 7.6E-05 43.6 7.4 104 7-129 143-254 (311)
160 PLN02858 fructose-bisphosphate 83.1 3.7 8E-05 52.0 8.6 115 9-132 324-447 (1378)
161 TIGR00706 SppA_dom signal pept 82.0 3.2 7E-05 41.1 6.3 52 204-256 18-73 (207)
162 cd07023 S49_Sppa_N_C Signal pe 81.9 2.2 4.8E-05 42.2 5.0 53 203-256 21-78 (208)
163 PLN02712 arogenate dehydrogena 81.7 4.1 9E-05 47.7 7.9 78 7-94 367-446 (667)
164 KOG2741 Dimeric dihydrodiol de 81.4 5.5 0.00012 42.5 7.9 70 56-128 57-127 (351)
165 PRK07679 pyrroline-5-carboxyla 81.0 7 0.00015 40.4 8.6 98 9-115 3-109 (279)
166 COG1748 LYS9 Saccharopine dehy 80.9 4.8 0.0001 44.0 7.5 111 10-128 2-120 (389)
167 PTZ00345 glycerol-3-phosphate 80.9 9.6 0.00021 41.4 9.8 51 56-110 80-134 (365)
168 PRK06270 homoserine dehydrogen 80.7 7.8 0.00017 41.6 9.0 66 61-128 79-148 (341)
169 cd07014 S49_SppA Signal peptid 80.5 2.8 6.1E-05 40.4 5.1 55 203-258 26-85 (177)
170 TIGR03026 NDP-sugDHase nucleot 80.5 6.5 0.00014 43.1 8.6 103 10-118 1-132 (411)
171 COG0111 SerA Phosphoglycerate 80.3 4.2 9E-05 43.4 6.7 108 7-126 140-253 (324)
172 COG0616 SppA Periplasmic serin 80.2 3.3 7.3E-05 44.0 6.0 80 163-258 60-142 (317)
173 cd01391 Periplasmic_Binding_Pr 80.1 44 0.00095 32.2 13.6 189 56-256 15-220 (269)
174 COG1086 Predicted nucleoside-d 80.0 1E+02 0.0023 35.3 17.6 200 11-250 117-330 (588)
175 PRK06476 pyrroline-5-carboxyla 79.9 5.4 0.00012 40.7 7.2 97 11-114 2-102 (258)
176 PLN02712 arogenate dehydrogena 79.6 4.7 0.0001 47.3 7.4 77 8-94 51-129 (667)
177 PRK11880 pyrroline-5-carboxyla 79.6 3.8 8.3E-05 41.9 6.0 93 10-111 3-100 (267)
178 COG1810 Uncharacterized protei 79.5 26 0.00056 35.2 11.4 107 11-132 3-114 (224)
179 PF02826 2-Hacid_dh_C: D-isome 79.4 2.5 5.3E-05 40.8 4.3 108 5-126 32-147 (178)
180 COG3804 Uncharacterized conser 79.4 9.2 0.0002 39.8 8.4 114 13-130 5-130 (350)
181 PRK06436 glycerate dehydrogena 79.4 10 0.00022 40.0 9.2 102 6-126 119-229 (303)
182 PRK14619 NAD(P)H-dependent gly 79.1 8.4 0.00018 40.5 8.5 80 9-111 4-88 (308)
183 TIGR01327 PGDH D-3-phosphoglyc 78.9 6.3 0.00014 44.9 8.0 112 7-128 136-251 (525)
184 PF10727 Rossmann-like: Rossma 78.9 4.1 8.8E-05 37.5 5.3 105 10-127 11-122 (127)
185 PRK12480 D-lactate dehydrogena 78.8 9.6 0.00021 40.7 8.9 109 7-128 144-256 (330)
186 PRK06598 aspartate-semialdehyd 78.1 10 0.00023 41.1 9.0 114 11-134 3-137 (369)
187 PTZ00431 pyrroline carboxylate 78.1 8 0.00017 39.6 7.9 91 10-115 4-100 (260)
188 PRK08655 prephenate dehydrogen 77.9 9.7 0.00021 42.3 8.9 111 10-130 1-115 (437)
189 TIGR03025 EPS_sugtrans exopoly 77.8 13 0.00028 41.1 10.0 85 9-102 125-220 (445)
190 TIGR03022 WbaP_sugtrans Undeca 77.5 13 0.00028 41.3 9.9 87 10-105 126-223 (456)
191 PF13460 NAD_binding_10: NADH( 77.5 6.4 0.00014 37.3 6.5 88 12-106 1-98 (183)
192 PRK02261 methylaspartate mutas 77.3 20 0.00043 33.3 9.5 61 72-132 54-121 (137)
193 PF13727 CoA_binding_3: CoA-bi 76.9 7.8 0.00017 36.2 6.9 74 22-102 92-173 (175)
194 PRK05225 ketol-acid reductoiso 76.1 2.3 5E-05 47.2 3.3 93 7-110 34-135 (487)
195 cd07019 S49_SppA_1 Signal pept 76.1 5.1 0.00011 39.8 5.6 55 202-256 24-82 (211)
196 PRK14620 NAD(P)H-dependent gly 76.1 10 0.00022 40.1 8.2 97 10-110 1-111 (326)
197 PRK08605 D-lactate dehydrogena 75.9 10 0.00022 40.5 8.2 106 7-127 144-257 (332)
198 COG0136 Asd Aspartate-semialde 75.8 14 0.00031 39.4 9.0 116 10-134 2-135 (334)
199 TIGR00705 SppA_67K signal pept 75.5 4.2 9.1E-05 46.9 5.4 82 160-258 306-392 (584)
200 PRK11790 D-3-phosphoglycerate 75.3 10 0.00022 41.8 8.1 106 7-126 149-259 (409)
201 PRK00257 erythronate-4-phospha 75.2 12 0.00026 40.8 8.6 102 6-125 113-226 (381)
202 cd00394 Clp_protease_like Case 74.6 5.2 0.00011 37.6 5.0 51 204-257 16-70 (161)
203 PRK15204 undecaprenyl-phosphat 74.4 19 0.0004 40.6 10.1 86 10-105 147-242 (476)
204 PLN02591 tryptophan synthase 74.2 39 0.00085 34.7 11.6 41 85-127 94-134 (250)
205 PF05368 NmrA: NmrA-like famil 74.1 8.7 0.00019 38.1 6.7 117 12-131 1-143 (233)
206 PRK07502 cyclohexadienyl dehyd 73.8 13 0.00029 38.9 8.3 111 10-130 7-123 (307)
207 PRK10949 protease 4; Provision 73.1 7.6 0.00016 45.1 6.7 87 203-293 99-200 (618)
208 PLN02688 pyrroline-5-carboxyla 72.1 13 0.00028 37.9 7.6 93 10-112 1-102 (266)
209 PF03807 F420_oxidored: NADP o 72.0 4.5 9.7E-05 34.3 3.5 75 11-93 1-81 (96)
210 PRK06928 pyrroline-5-carboxyla 72.0 11 0.00025 38.9 7.2 96 11-113 3-106 (277)
211 TIGR01745 asd_gamma aspartate- 71.9 17 0.00037 39.5 8.6 62 72-135 64-137 (366)
212 PRK08507 prephenate dehydrogen 71.8 22 0.00048 36.5 9.3 75 11-95 2-80 (275)
213 PRK00436 argC N-acetyl-gamma-g 71.7 14 0.00031 39.6 8.1 96 10-110 3-104 (343)
214 PRK15057 UDP-glucose 6-dehydro 71.4 12 0.00025 41.1 7.4 111 10-124 1-135 (388)
215 PRK08306 dipicolinate synthase 71.2 25 0.00055 36.9 9.6 98 10-128 3-118 (296)
216 TIGR03023 WcaJ_sugtrans Undeca 70.3 27 0.00058 38.7 10.1 85 10-103 129-224 (451)
217 PRK15438 erythronate-4-phospha 69.9 21 0.00046 39.0 8.9 101 7-125 114-226 (378)
218 COG4693 PchG Oxidoreductase (N 69.8 6.7 0.00015 40.7 4.7 111 7-127 2-119 (361)
219 PRK11199 tyrA bifunctional cho 69.4 30 0.00064 37.6 10.0 84 10-116 99-185 (374)
220 PRK10949 protease 4; Provision 69.3 8.2 0.00018 44.8 5.8 82 160-258 324-410 (618)
221 PRK07417 arogenate dehydrogena 69.2 16 0.00034 37.9 7.5 93 10-112 1-97 (279)
222 PRK13581 D-3-phosphoglycerate 69.0 13 0.00027 42.5 7.3 106 7-126 138-250 (526)
223 PF01210 NAD_Gly3P_dh_N: NAD-d 68.7 6.2 0.00014 37.2 4.0 73 56-132 56-135 (157)
224 PRK13111 trpA tryptophan synth 67.7 1.1E+02 0.0025 31.4 13.3 68 59-128 76-146 (258)
225 TIGR02990 ectoine_eutA ectoine 67.7 65 0.0014 32.8 11.4 69 178-249 138-211 (239)
226 PRK08818 prephenate dehydrogen 67.3 49 0.0011 36.0 11.0 83 8-111 3-93 (370)
227 PRK06932 glycerate dehydrogena 67.1 15 0.00033 38.9 7.0 100 8-126 146-253 (314)
228 COG3268 Uncharacterized conser 67.0 7.9 0.00017 41.3 4.6 125 9-140 6-140 (382)
229 CHL00194 ycf39 Ycf39; Provisio 66.8 37 0.00081 35.4 9.9 93 10-106 1-110 (317)
230 TIGR02853 spore_dpaA dipicolin 66.6 19 0.00042 37.6 7.6 98 10-128 2-117 (287)
231 PRK14806 bifunctional cyclohex 66.4 26 0.00057 41.4 9.5 110 10-128 4-119 (735)
232 TIGR03215 ac_ald_DH_ac acetald 66.4 16 0.00034 38.4 6.8 89 10-105 2-95 (285)
233 PRK12491 pyrroline-5-carboxyla 66.1 17 0.00036 37.7 6.9 96 11-114 4-106 (272)
234 cd02071 MM_CoA_mut_B12_BD meth 65.5 40 0.00087 30.3 8.5 70 58-132 38-111 (122)
235 KOG1502 Flavonol reductase/cin 64.8 32 0.0007 36.7 8.7 243 10-303 6-315 (327)
236 cd00316 Oxidoreductase_nitroge 64.4 1.6E+02 0.0034 31.8 14.5 175 82-291 65-251 (399)
237 PRK15182 Vi polysaccharide bio 63.9 23 0.00051 39.2 7.9 31 7-38 4-35 (425)
238 TIGR02853 spore_dpaA dipicolin 63.0 8.8 0.00019 40.2 4.2 118 7-140 149-272 (287)
239 TIGR00705 SppA_67K signal pept 62.6 11 0.00023 43.6 5.1 90 203-293 80-181 (584)
240 COG1064 AdhP Zn-dependent alco 62.5 39 0.00085 36.3 8.9 87 7-97 164-253 (339)
241 cd01065 NAD_bind_Shikimate_DH 62.2 6.1 0.00013 36.5 2.6 112 7-129 17-137 (155)
242 PRK08462 biotin carboxylase; V 62.1 55 0.0012 36.1 10.6 105 9-140 3-117 (445)
243 PRK06487 glycerate dehydrogena 62.0 22 0.00047 37.8 7.0 100 7-126 146-253 (317)
244 PRK04207 glyceraldehyde-3-phos 61.0 16 0.00036 39.1 5.9 46 56-107 65-110 (341)
245 PRK15409 bifunctional glyoxyla 60.7 39 0.00086 36.0 8.7 105 7-126 143-256 (323)
246 TIGR03013 EpsB_2 sugar transfe 60.1 36 0.00078 37.8 8.6 83 10-102 125-218 (442)
247 PLN02928 oxidoreductase family 60.0 25 0.00053 37.9 7.1 110 7-126 157-282 (347)
248 cd06300 PBP1_ABC_sugar_binding 59.7 1.8E+02 0.0039 28.9 13.0 149 87-246 50-211 (272)
249 PRK10124 putative UDP-glucose 59.5 51 0.0011 36.9 9.7 81 9-101 143-234 (463)
250 COG0287 TyrA Prephenate dehydr 59.4 39 0.00085 35.3 8.2 92 10-110 4-102 (279)
251 PRK08300 acetaldehyde dehydrog 59.0 23 0.00051 37.4 6.5 93 8-106 3-102 (302)
252 COG0372 GltA Citrate synthase 57.5 7.3 0.00016 42.6 2.5 52 347-399 26-79 (390)
253 COG1023 Gnd Predicted 6-phosph 57.3 62 0.0013 33.3 8.7 117 11-133 2-121 (300)
254 COG2099 CobK Precorrin-6x redu 57.3 85 0.0018 32.4 9.8 116 10-128 3-132 (257)
255 PF01118 Semialdhyde_dh: Semia 57.0 29 0.00064 31.0 6.0 35 72-108 66-100 (121)
256 PLN02383 aspartate semialdehyd 55.9 82 0.0018 33.9 10.2 59 72-133 69-140 (344)
257 PF03447 NAD_binding_3: Homose 55.9 13 0.00028 32.9 3.5 73 54-128 42-115 (117)
258 PRK08306 dipicolinate synthase 55.4 24 0.00052 37.0 5.9 114 7-136 150-269 (296)
259 COG0159 TrpA Tryptophan syntha 52.4 1.2E+02 0.0025 31.6 10.0 44 86-131 111-157 (265)
260 cd01967 Nitrogenase_MoFe_alpha 52.2 1.9E+02 0.0042 31.4 12.6 174 84-291 73-258 (406)
261 PLN02545 3-hydroxybutyryl-CoA 51.7 40 0.00087 35.0 6.9 96 10-112 5-126 (295)
262 cd06374 PBP1_mGluR_groupI Liga 51.6 2.4E+02 0.0053 31.2 13.5 134 101-244 119-271 (472)
263 cd00419 Ferrochelatase_C Ferro 51.6 32 0.0007 31.8 5.5 48 86-133 79-134 (135)
264 PLN02695 GDP-D-mannose-3',5'-e 51.5 2.1E+02 0.0046 30.7 12.6 21 87-107 118-138 (370)
265 PF01113 DapB_N: Dihydrodipico 51.4 47 0.001 30.0 6.4 88 163-257 2-104 (124)
266 KOG1447 GTP-specific succinyl- 50.7 32 0.0007 35.5 5.6 96 160-256 281-380 (412)
267 KOG2653 6-phosphogluconate deh 50.2 33 0.00071 37.0 5.8 120 10-133 7-132 (487)
268 TIGR03649 ergot_EASG ergot alk 50.0 99 0.0021 31.5 9.4 88 12-106 2-105 (285)
269 TIGR01724 hmd_rel H2-forming N 49.6 1.1E+02 0.0025 32.7 9.7 110 18-140 30-145 (341)
270 COG0436 Aspartate/tyrosine/aro 49.6 98 0.0021 33.9 9.7 73 57-132 120-204 (393)
271 PF00289 CPSase_L_chain: Carba 49.5 1.2E+02 0.0027 26.9 8.7 44 85-132 62-107 (110)
272 cd06267 PBP1_LacI_sugar_bindin 49.4 2.1E+02 0.0046 27.7 11.5 80 160-244 115-202 (264)
273 PRK11064 wecC UDP-N-acetyl-D-m 49.0 49 0.0011 36.5 7.3 110 9-124 3-137 (415)
274 PRK09260 3-hydroxybutyryl-CoA 48.6 13 0.00028 38.6 2.6 53 57-112 69-124 (288)
275 PF07755 DUF1611: Protein of u 48.6 9.9 0.00021 40.1 1.7 188 45-256 9-228 (301)
276 PRK11863 N-acetyl-gamma-glutam 48.4 76 0.0016 33.8 8.3 35 72-108 50-84 (313)
277 PRK06072 enoyl-CoA hydratase; 48.4 53 0.0012 33.3 7.0 83 205-293 33-133 (248)
278 KOG1203 Predicted dehydrogenas 48.1 40 0.00087 37.2 6.3 31 6-37 76-110 (411)
279 cd01971 Nitrogenase_VnfN_like 48.1 2.4E+02 0.0052 31.1 12.6 181 79-291 68-260 (427)
280 cd06278 PBP1_LacI_like_2 Ligan 47.7 1.9E+02 0.0041 28.4 10.8 167 60-241 18-196 (266)
281 PRK11150 rfaD ADP-L-glycero-D- 47.7 3.3E+02 0.0071 27.9 13.7 18 88-106 99-116 (308)
282 PF03435 Saccharop_dh: Sacchar 47.6 27 0.00058 37.8 5.0 65 57-128 55-119 (386)
283 PLN02494 adenosylhomocysteinas 47.3 49 0.0011 37.2 6.9 119 4-138 249-373 (477)
284 COG2204 AtoC Response regulato 47.2 45 0.00097 37.4 6.6 92 220-316 167-263 (464)
285 TIGR01915 npdG NADPH-dependent 47.2 33 0.00071 34.1 5.2 95 10-110 1-106 (219)
286 PF07085 DRTGG: DRTGG domain; 46.9 34 0.00073 29.8 4.6 50 74-129 41-90 (105)
287 PRK13957 indole-3-glycerol-pho 46.4 49 0.0011 34.0 6.3 91 88-182 116-221 (247)
288 PF08659 KR: KR domain; Inter 45.9 1.6E+02 0.0035 28.1 9.6 88 164-256 3-93 (181)
289 PRK09426 methylmalonyl-CoA mut 45.8 76 0.0016 37.7 8.5 57 72-132 633-694 (714)
290 PF13407 Peripla_BP_4: Peripla 45.3 90 0.002 30.8 8.1 80 161-247 122-211 (257)
291 cd06270 PBP1_GalS_like Ligand 45.2 3.2E+02 0.0069 27.0 14.6 169 63-246 21-204 (268)
292 TIGR01850 argC N-acetyl-gamma- 45.1 79 0.0017 34.0 8.0 37 72-110 68-104 (346)
293 PRK06023 enoyl-CoA hydratase; 45.0 37 0.0008 34.5 5.2 16 243-258 96-111 (251)
294 PRK08293 3-hydroxybutyryl-CoA 44.7 1.2E+02 0.0026 31.3 9.1 53 56-111 71-126 (287)
295 COG0362 Gnd 6-phosphogluconate 44.5 91 0.002 34.3 8.1 118 9-132 3-128 (473)
296 cd07020 Clp_protease_NfeD_1 No 44.0 63 0.0014 31.3 6.5 51 204-257 18-74 (187)
297 TIGR00978 asd_EA aspartate-sem 43.8 1.1E+02 0.0023 32.8 8.8 36 72-109 73-108 (341)
298 COG2085 Predicted dinucleotide 43.7 48 0.001 33.2 5.5 78 10-95 2-82 (211)
299 cd01075 NAD_bind_Leu_Phe_Val_D 43.5 67 0.0014 31.6 6.6 120 7-139 26-150 (200)
300 PLN00016 RNA-binding protein; 43.4 90 0.0019 33.6 8.2 26 9-34 52-84 (378)
301 PF00072 Response_reg: Respons 43.4 1.4E+02 0.0031 24.9 8.1 76 166-251 3-78 (112)
302 PRK06728 aspartate-semialdehyd 43.0 1E+02 0.0023 33.2 8.4 57 72-134 68-134 (347)
303 TIGR00936 ahcY adenosylhomocys 42.8 1.1E+02 0.0024 33.8 8.7 113 6-134 192-309 (406)
304 PRK07530 3-hydroxybutyryl-CoA 42.7 22 0.00047 37.0 3.2 99 8-111 3-125 (292)
305 PRK12483 threonine dehydratase 42.0 3.8E+02 0.0082 30.7 13.1 196 77-310 88-287 (521)
306 TIGR02326 transamin_PhnW 2-ami 42.0 2E+02 0.0043 30.4 10.5 85 160-249 76-164 (363)
307 cd06558 crotonase-like Crotona 41.6 95 0.0021 29.7 7.3 16 243-258 92-107 (195)
308 cd03466 Nitrogenase_NifN_2 Nit 41.5 3E+02 0.0064 30.5 12.0 164 73-250 62-252 (429)
309 CHL00200 trpA tryptophan synth 41.2 2.6E+02 0.0056 28.9 10.8 98 22-126 34-146 (263)
310 PRK06179 short chain dehydroge 40.7 3.8E+02 0.0083 26.7 12.5 24 10-34 5-32 (270)
311 cd06273 PBP1_GntR_like_1 This 40.3 3.7E+02 0.008 26.4 13.0 177 58-246 16-205 (268)
312 PRK12921 2-dehydropantoate 2-r 40.3 75 0.0016 32.8 6.8 37 72-109 68-106 (305)
313 PRK07531 bifunctional 3-hydrox 40.0 34 0.00073 38.7 4.4 96 10-111 5-122 (495)
314 PRK05808 3-hydroxybutyryl-CoA 40.0 89 0.0019 32.2 7.3 50 57-111 71-124 (282)
315 cd07021 Clp_protease_NfeD_like 39.7 64 0.0014 31.3 5.7 50 205-257 19-71 (178)
316 COG1167 ARO8 Transcriptional r 39.7 1.3E+02 0.0029 33.5 9.0 84 54-138 183-274 (459)
317 COG1052 LdhA Lactate dehydroge 39.6 99 0.0021 33.0 7.6 108 7-129 144-259 (324)
318 PF09350 DUF1992: Domain of un 39.1 1.8E+02 0.004 23.8 7.5 58 463-521 2-65 (71)
319 cd01965 Nitrogenase_MoFe_beta_ 39.1 2.8E+02 0.0061 30.5 11.4 156 87-250 71-251 (428)
320 TIGR03376 glycerol3P_DH glycer 38.9 88 0.0019 33.7 7.1 51 57-111 70-122 (342)
321 cd01966 Nitrogenase_NifN_1 Nit 38.9 3.6E+02 0.0078 29.7 12.1 158 78-250 62-252 (417)
322 COG1087 GalE UDP-glucose 4-epi 38.7 2.5E+02 0.0053 30.0 10.0 251 10-310 1-323 (329)
323 cd07034 TPP_PYR_PFOR_IOR-alpha 38.6 2.8E+02 0.006 25.6 9.8 145 87-251 3-158 (160)
324 cd06323 PBP1_ribose_binding Pe 38.5 3.9E+02 0.0084 26.1 12.8 72 58-132 16-88 (268)
325 TIGR00112 proC pyrroline-5-car 38.1 84 0.0018 31.9 6.6 51 59-113 33-85 (245)
326 PF10609 ParA: ParA/MinD ATPas 37.9 53 0.0012 27.8 4.2 55 74-129 2-58 (81)
327 PRK06494 enoyl-CoA hydratase; 37.7 64 0.0014 33.0 5.7 54 204-258 36-108 (259)
328 KOG3505 Mitochondrial/chloropl 37.5 37 0.00079 26.2 2.8 42 177-225 10-51 (55)
329 PRK12435 ferrochelatase; Provi 37.5 61 0.0013 34.4 5.6 48 86-133 234-289 (311)
330 PRK06130 3-hydroxybutyryl-CoA 37.4 43 0.00093 35.0 4.4 95 10-109 5-119 (311)
331 PLN03085 nucleobase:cation sym 37.4 1.8E+02 0.0038 29.3 8.2 59 463-521 93-155 (221)
332 PLN02657 3,8-divinyl protochlo 37.3 1.8E+02 0.0039 31.6 9.4 96 10-106 61-182 (390)
333 COG0541 Ffh Signal recognition 37.2 47 0.001 36.8 4.7 84 22-121 120-209 (451)
334 PLN03209 translocon at the inn 37.1 90 0.0019 36.1 7.1 29 6-35 77-109 (576)
335 cd01973 Nitrogenase_VFe_beta_l 36.8 2.3E+02 0.005 31.7 10.3 115 77-192 66-195 (454)
336 cd06362 PBP1_mGluR Ligand bind 36.7 4.2E+02 0.009 29.0 12.3 122 113-243 116-255 (452)
337 KOG0256 1-aminocyclopropane-1- 36.7 1.4E+02 0.003 33.1 7.9 108 6-129 143-264 (471)
338 PRK06129 3-hydroxyacyl-CoA deh 36.3 61 0.0013 34.0 5.4 89 11-104 4-115 (308)
339 PRK09076 enoyl-CoA hydratase; 36.1 68 0.0015 32.8 5.6 16 243-258 94-109 (258)
340 PF10100 DUF2338: Uncharacteri 35.6 85 0.0018 34.5 6.3 55 53-111 67-124 (429)
341 PF02844 GARS_N: Phosphoribosy 35.6 47 0.001 29.3 3.6 44 85-132 50-94 (100)
342 TIGR00216 ispH_lytB (E)-4-hydr 35.5 5.4E+02 0.012 26.9 13.4 171 55-241 51-233 (280)
343 PRK05579 bifunctional phosphop 35.3 6.4E+02 0.014 27.7 17.0 212 22-258 25-281 (399)
344 PLN00141 Tic62-NAD(P)-related 35.3 2.3E+02 0.0049 28.3 9.2 28 8-35 16-46 (251)
345 cd06375 PBP1_mGluR_groupII Lig 35.3 4.5E+02 0.0098 29.1 12.4 128 112-248 117-262 (458)
346 PLN02306 hydroxypyruvate reduc 35.1 1.4E+02 0.0031 32.7 8.1 111 7-126 163-292 (386)
347 cd01974 Nitrogenase_MoFe_beta 35.0 2.2E+02 0.0048 31.5 9.8 105 85-189 72-191 (435)
348 PLN02725 GDP-4-keto-6-deoxyman 34.8 1E+02 0.0022 31.4 6.8 75 18-106 8-101 (306)
349 cd06298 PBP1_CcpA_like Ligand- 34.6 4.5E+02 0.0097 25.7 11.5 170 60-245 18-203 (268)
350 PLN02460 indole-3-glycerol-pho 34.3 53 0.0011 35.3 4.5 144 22-185 144-310 (338)
351 PRK08057 cobalt-precorrin-6x r 34.3 2E+02 0.0043 29.5 8.6 26 9-34 2-29 (248)
352 TIGR03301 PhnW-AepZ 2-aminoeth 34.3 3.3E+02 0.0072 28.2 10.7 85 160-249 72-160 (355)
353 PF02153 PDH: Prephenate dehyd 34.3 76 0.0017 32.4 5.6 55 72-128 45-100 (258)
354 PRK09427 bifunctional indole-3 34.0 1.1E+02 0.0025 34.2 7.2 138 88-240 124-276 (454)
355 PRK08252 enoyl-CoA hydratase; 34.0 93 0.002 31.7 6.2 47 242-293 89-135 (254)
356 TIGR02079 THD1 threonine dehyd 33.7 4.4E+02 0.0096 29.0 11.8 133 78-229 68-207 (409)
357 COG0134 TrpC Indole-3-glycerol 33.7 33 0.00071 35.4 2.7 93 90-185 122-229 (254)
358 TIGR01851 argC_other N-acetyl- 33.6 2.2E+02 0.0047 30.4 8.9 35 72-108 49-83 (310)
359 smart00481 POLIIIAc DNA polyme 33.2 93 0.002 24.5 4.8 41 86-127 17-57 (67)
360 TIGR01777 yfcH conserved hypot 32.7 1.9E+02 0.0042 29.0 8.3 13 22-34 14-26 (292)
361 PRK05809 3-hydroxybutyryl-CoA 32.2 75 0.0016 32.4 5.1 54 204-258 36-111 (260)
362 PRK11303 DNA-binding transcrip 32.1 4.1E+02 0.0089 27.3 10.8 113 107-250 29-147 (328)
363 PRK06249 2-dehydropantoate 2-r 32.0 1.1E+02 0.0023 32.2 6.4 96 9-110 5-111 (313)
364 TIGR00262 trpA tryptophan synt 31.9 5.8E+02 0.013 26.2 13.0 40 86-127 104-143 (256)
365 COG2185 Sbm Methylmalonyl-CoA 31.9 1.4E+02 0.0029 28.2 6.2 48 77-125 43-92 (143)
366 COG0345 ProC Pyrroline-5-carbo 31.7 1.8E+02 0.0038 30.3 7.7 98 10-116 2-106 (266)
367 cd01972 Nitrogenase_VnfE_like 31.5 4.4E+02 0.0096 29.0 11.4 174 85-291 76-265 (426)
368 PRK13355 bifunctional HTH-doma 31.5 3E+02 0.0064 31.1 10.2 74 58-133 240-323 (517)
369 TIGR02622 CDP_4_6_dhtase CDP-g 31.4 4.1E+02 0.009 27.9 10.9 97 9-106 4-127 (349)
370 PRK06186 hypothetical protein; 31.4 66 0.0014 32.7 4.4 74 57-136 14-93 (229)
371 cd06367 PBP1_iGluR_NMDA N-term 31.3 6.4E+02 0.014 26.5 13.6 130 113-251 79-227 (362)
372 COG1609 PurR Transcriptional r 31.3 3.5E+02 0.0076 28.7 10.2 112 107-250 26-143 (333)
373 TIGR02153 gatD_arch glutamyl-t 31.3 1.8E+02 0.0039 32.1 8.1 90 199-308 284-375 (404)
374 PLN02600 enoyl-CoA hydratase 31.2 1E+02 0.0023 31.3 6.0 16 243-258 87-102 (251)
375 PRK02910 light-independent pro 31.2 2.9E+02 0.0062 31.5 10.0 42 96-137 84-127 (519)
376 PLN02550 threonine dehydratase 31.1 2.6E+02 0.0056 32.6 9.6 197 77-310 160-359 (591)
377 PF14871 GHL6: Hypothetical gl 31.1 90 0.002 28.8 4.9 47 88-134 4-67 (132)
378 KOG2733 Uncharacterized membra 31.0 69 0.0015 34.7 4.6 64 62-130 76-143 (423)
379 PRK07509 enoyl-CoA hydratase; 30.6 1.2E+02 0.0026 30.9 6.4 46 243-293 101-146 (262)
380 PRK06522 2-dehydropantoate 2-r 30.4 1.7E+02 0.0037 30.0 7.6 93 10-109 1-104 (304)
381 COG0075 Serine-pyruvate aminot 30.3 1.8E+02 0.0039 31.9 7.8 79 159-240 77-159 (383)
382 PRK10203 hypothetical protein; 30.3 2.8E+02 0.006 25.4 7.8 58 463-520 8-69 (122)
383 COG3367 Uncharacterized conser 30.3 1.1E+02 0.0024 32.6 6.0 103 19-128 14-126 (339)
384 PRK05784 phosphoribosylamine-- 30.3 2.9E+02 0.0063 31.2 9.8 47 86-136 58-105 (486)
385 PF00158 Sigma54_activat: Sigm 30.2 78 0.0017 30.3 4.5 108 208-322 15-127 (168)
386 PRK13602 putative ribosomal pr 30.1 1.6E+02 0.0034 24.8 5.9 40 87-127 17-56 (82)
387 PF02646 RmuC: RmuC family; I 30.0 51 0.0011 34.8 3.5 53 58-134 164-216 (304)
388 PF01094 ANF_receptor: Recepto 29.9 6.1E+02 0.013 25.8 12.7 149 94-253 48-215 (348)
389 PRK15181 Vi polysaccharide bio 29.8 2.6E+02 0.0055 29.6 8.9 24 113-136 121-145 (348)
390 cd00757 ThiF_MoeB_HesA_family 29.8 3.8E+02 0.0083 26.7 9.7 121 7-134 19-146 (228)
391 COG1184 GCD2 Translation initi 29.8 2.8E+02 0.0062 29.4 8.9 104 74-190 121-226 (301)
392 TIGR01296 asd_B aspartate-semi 29.7 2.1E+02 0.0044 30.7 8.1 27 72-99 61-87 (339)
393 PRK11096 ansB L-asparaginase I 29.5 2.9E+02 0.0063 29.9 9.2 75 201-299 243-320 (347)
394 PF13684 Dak1_2: Dihydroxyacet 29.5 1.6E+02 0.0034 31.3 7.1 77 184-267 113-189 (313)
395 cd01981 Pchlide_reductase_B Pc 29.4 3.6E+02 0.0079 29.6 10.3 150 86-250 74-243 (430)
396 PRK07110 polyketide biosynthes 29.3 1.7E+02 0.0037 29.6 7.2 46 243-293 93-138 (249)
397 COG1024 CaiD Enoyl-CoA hydrata 29.3 99 0.0021 31.5 5.4 53 204-258 37-112 (257)
398 TIGR00715 precor6x_red precorr 29.1 2.4E+02 0.0051 29.1 8.1 26 10-35 1-28 (256)
399 PRK05869 enoyl-CoA hydratase; 29.0 83 0.0018 31.4 4.7 16 243-258 98-113 (222)
400 PF01073 3Beta_HSD: 3-beta hyd 28.8 2E+02 0.0043 29.7 7.7 10 22-31 13-22 (280)
401 COG1171 IlvA Threonine dehydra 28.7 7.8E+02 0.017 26.7 16.9 213 59-310 60-277 (347)
402 cd01537 PBP1_Repressors_Sugar_ 28.7 5.3E+02 0.012 24.7 12.6 175 59-242 17-201 (264)
403 PRK09461 ansA cytoplasmic aspa 28.7 2.2E+02 0.0047 30.5 8.1 78 201-299 220-302 (335)
404 PRK05674 gamma-carboxygeranoyl 28.6 92 0.002 32.0 5.1 16 243-258 100-115 (265)
405 cd06358 PBP1_NHase Type I peri 28.6 6.7E+02 0.015 25.9 12.8 73 177-253 122-195 (333)
406 PRK12557 H(2)-dependent methyl 28.6 3.2E+02 0.007 29.4 9.4 94 18-119 30-130 (342)
407 cd00411 Asparaginase Asparagin 28.5 1.6E+02 0.0036 31.3 7.1 85 199-304 218-304 (323)
408 PRK05864 enoyl-CoA hydratase; 28.5 87 0.0019 32.3 4.9 16 243-258 108-123 (276)
409 CHL00073 chlN photochlorophyll 28.4 3.2E+02 0.0069 30.7 9.5 185 52-242 57-287 (457)
410 PLN02231 alanine transaminase 28.4 3.7E+02 0.0081 30.7 10.4 34 97-130 271-310 (534)
411 PRK05995 enoyl-CoA hydratase; 28.3 89 0.0019 31.9 4.9 16 243-258 98-113 (262)
412 cd07013 S14_ClpP Caseinolytic 28.0 1.1E+02 0.0025 28.9 5.3 53 203-257 16-71 (162)
413 PF00218 IGPS: Indole-3-glycer 27.7 79 0.0017 32.6 4.3 93 88-184 123-230 (254)
414 TIGR03466 HpnA hopanoid-associ 27.7 2.6E+02 0.0055 28.7 8.4 24 11-34 2-28 (328)
415 PF06230 DUF1009: Protein of u 27.7 66 0.0014 32.3 3.6 43 87-129 172-214 (214)
416 PRK12833 acetyl-CoA carboxylas 27.6 4.3E+02 0.0094 29.5 10.6 105 9-139 4-117 (467)
417 cd06309 PBP1_YtfQ_like Peripla 27.4 5E+02 0.011 25.7 10.2 72 58-132 16-88 (273)
418 TIGR02279 PaaC-3OHAcCoADH 3-hy 27.4 92 0.002 35.4 5.2 101 6-111 2-126 (503)
419 PRK06144 enoyl-CoA hydratase; 27.1 1.1E+02 0.0024 31.3 5.4 16 243-258 101-116 (262)
420 PRK08040 putative semialdehyde 27.1 1.7E+02 0.0036 31.5 6.8 36 72-109 66-101 (336)
421 PRK05870 enoyl-CoA hydratase; 27.1 95 0.002 31.5 4.8 16 243-258 94-109 (249)
422 PRK05865 hypothetical protein; 27.1 4.5E+02 0.0097 32.1 11.0 91 11-108 2-105 (854)
423 PRK13802 bifunctional indole-3 26.9 1.1E+02 0.0024 36.2 5.8 94 88-185 125-233 (695)
424 TIGR00519 asnASE_I L-asparagin 26.9 2.5E+02 0.0055 30.0 8.2 86 199-308 220-311 (336)
425 cd01968 Nitrogenase_NifE_I Nit 26.8 5.9E+02 0.013 27.8 11.3 181 73-291 64-256 (410)
426 PRK14874 aspartate-semialdehyd 26.8 3.2E+02 0.0069 29.1 9.0 26 72-98 63-88 (334)
427 TIGR03189 dienoyl_CoA_hyt cycl 26.7 93 0.002 31.7 4.7 53 204-257 32-102 (251)
428 PRK11475 DNA-binding transcrip 26.6 5.3E+02 0.012 25.4 10.0 83 203-309 25-114 (207)
429 PRK00048 dihydrodipicolinate r 26.5 4.5E+02 0.0098 26.8 9.7 122 163-312 3-132 (257)
430 PRK07511 enoyl-CoA hydratase; 26.5 1.1E+02 0.0023 31.3 5.1 16 243-258 97-112 (260)
431 PRK10538 malonic semialdehyde 26.2 2.4E+02 0.0052 27.9 7.6 24 11-34 2-28 (248)
432 PRK13789 phosphoribosylamine-- 26.0 3.4E+02 0.0073 30.0 9.3 96 7-131 1-99 (426)
433 PRK09265 aminotransferase AlaT 26.0 5.3E+02 0.012 27.8 10.8 43 90-132 161-209 (404)
434 PRK07827 enoyl-CoA hydratase; 25.9 2E+02 0.0043 29.3 7.0 45 243-292 100-144 (260)
435 PTZ00433 tyrosine aminotransfe 25.8 2.3E+02 0.005 30.8 7.9 73 57-131 135-217 (412)
436 PRK11423 methylmalonyl-CoA dec 25.8 2.3E+02 0.0049 29.0 7.4 46 243-293 95-140 (261)
437 PRK06688 enoyl-CoA hydratase; 25.7 1.1E+02 0.0025 31.0 5.1 16 243-258 95-110 (259)
438 PRK12360 4-hydroxy-3-methylbut 25.7 1.5E+02 0.0033 31.1 6.0 77 55-138 53-136 (281)
439 PRK06143 enoyl-CoA hydratase; 25.7 1.4E+02 0.0031 30.4 5.8 53 205-258 40-114 (256)
440 PRK11382 frlB fructoselysine-6 25.6 3.4E+02 0.0075 28.9 9.0 101 86-207 32-136 (340)
441 PRK10820 DNA-binding transcrip 25.6 1.9E+02 0.0042 32.9 7.4 126 184-319 199-329 (520)
442 PRK00087 4-hydroxy-3-methylbut 25.5 1.1E+03 0.025 27.5 16.2 224 54-311 51-300 (647)
443 TIGR01481 ccpA catabolite cont 25.5 5.5E+02 0.012 26.3 10.4 112 107-250 27-144 (329)
444 cd01493 APPBP1_RUB Ubiquitin a 25.4 2E+02 0.0043 32.0 7.2 121 9-137 20-150 (425)
445 PF03709 OKR_DC_1_N: Orn/Lys/A 25.3 1.3E+02 0.0028 26.8 4.8 71 172-253 4-76 (115)
446 PRK06392 homoserine dehydrogen 25.2 2.9E+02 0.0062 29.6 8.2 63 62-128 73-139 (326)
447 PRK05862 enoyl-CoA hydratase; 25.2 1E+02 0.0022 31.4 4.7 53 205-258 37-108 (257)
448 TIGR02931 anfK_nitrog Fe-only 25.2 5.2E+02 0.011 28.9 10.6 153 84-249 78-262 (461)
449 PLN02214 cinnamoyl-CoA reducta 25.1 5.2E+02 0.011 27.2 10.2 24 11-34 11-38 (342)
450 PRK07799 enoyl-CoA hydratase; 25.0 2.1E+02 0.0046 29.1 7.0 47 242-293 98-144 (263)
451 PRK09526 lacI lac repressor; R 25.0 7.7E+02 0.017 25.4 11.5 114 107-250 31-150 (342)
452 PF04273 DUF442: Putative phos 24.9 1.5E+02 0.0033 26.4 5.2 96 74-182 8-107 (110)
453 PLN02427 UDP-apiose/xylose syn 24.9 5.1E+02 0.011 27.7 10.3 31 4-34 9-43 (386)
454 COG0504 PyrG CTP synthase (UTP 24.8 80 0.0017 35.5 3.9 76 57-135 301-382 (533)
455 COG2910 Putative NADH-flavin r 24.6 5.2E+02 0.011 25.7 9.0 89 10-105 1-104 (211)
456 PRK02842 light-independent pro 24.4 2.3E+02 0.0049 31.4 7.5 133 53-192 57-198 (427)
457 PF13241 NAD_binding_7: Putati 24.4 1.5E+02 0.0033 25.6 5.0 80 8-99 6-87 (103)
458 PRK12320 hypothetical protein; 24.4 2.6E+02 0.0056 33.2 8.2 88 11-107 2-103 (699)
459 PF07287 DUF1446: Protein of u 24.3 1.3E+02 0.0029 32.6 5.5 40 86-126 60-100 (362)
460 cd01483 E1_enzyme_family Super 24.3 3.7E+02 0.008 24.4 7.8 116 12-135 2-125 (143)
461 PF04422 FrhB_FdhB_N: Coenzyme 24.3 60 0.0013 27.3 2.3 31 164-195 13-43 (82)
462 PRK08138 enoyl-CoA hydratase; 24.2 1.4E+02 0.0029 30.6 5.4 54 204-258 40-112 (261)
463 PRK05980 enoyl-CoA hydratase; 24.1 1.4E+02 0.0029 30.5 5.4 16 243-258 99-114 (260)
464 PRK07324 transaminase; Validat 24.1 3E+02 0.0065 29.5 8.3 75 55-131 109-193 (373)
465 PRK06495 enoyl-CoA hydratase; 24.1 1.2E+02 0.0026 31.0 4.9 16 243-258 96-111 (257)
466 cd07016 S14_ClpP_1 Caseinolyti 24.0 1.2E+02 0.0026 28.3 4.6 53 203-257 16-71 (160)
467 TIGR00109 hemH ferrochelatase. 24.0 1.4E+02 0.0029 31.9 5.4 47 86-132 248-302 (322)
468 KOG0029 Amine oxidase [Seconda 23.9 51 0.0011 37.4 2.3 25 9-33 15-41 (501)
469 PF07152 YaeQ: YaeQ protein; 23.8 76 0.0016 30.9 3.2 59 183-255 52-110 (174)
470 PF00290 Trp_syntA: Tryptophan 23.7 4.3E+02 0.0093 27.4 8.8 67 59-127 74-143 (259)
471 TIGR00237 xseA exodeoxyribonuc 23.7 7.9E+02 0.017 27.3 11.6 88 159-251 127-226 (432)
472 PRK05957 aspartate aminotransf 23.6 3.4E+02 0.0075 29.1 8.7 70 57-128 120-197 (389)
473 PRK06207 aspartate aminotransf 23.5 4.2E+02 0.0091 28.7 9.4 45 87-132 169-219 (405)
474 PRK07657 enoyl-CoA hydratase; 23.5 1.4E+02 0.0029 30.5 5.2 16 243-258 96-111 (260)
475 PRK05443 polyphosphate kinase; 23.4 1.8E+02 0.0039 34.4 6.7 84 204-305 353-437 (691)
476 cd01491 Ube1_repeat1 Ubiquitin 23.3 3.7E+02 0.008 28.2 8.4 113 9-137 19-143 (286)
477 PRK14987 gluconate operon tran 23.3 7.6E+02 0.017 25.3 11.0 112 107-250 31-148 (331)
478 TIGR02356 adenyl_thiF thiazole 23.2 4.3E+02 0.0094 25.8 8.6 122 6-135 18-147 (202)
479 PRK08229 2-dehydropantoate 2-r 23.2 3.4E+02 0.0073 28.5 8.4 94 10-110 3-112 (341)
480 cd03074 PDI_b'_Calsequestrin_C 23.2 1.2E+02 0.0026 27.2 4.0 41 202-242 6-46 (120)
481 PRK01018 50S ribosomal protein 23.2 2.4E+02 0.0051 24.6 5.9 40 87-127 22-61 (99)
482 PRK07658 enoyl-CoA hydratase; 23.2 1.4E+02 0.003 30.4 5.1 16 243-258 93-108 (257)
483 PF04914 DltD_C: DltD C-termin 23.0 1.7E+02 0.0037 27.0 5.1 44 85-128 37-93 (130)
484 TIGR03210 badI 2-ketocyclohexa 22.9 1.6E+02 0.0034 30.0 5.6 16 243-258 93-108 (256)
485 PTZ00377 alanine aminotransfer 22.9 3.1E+02 0.0067 30.6 8.3 35 97-131 218-258 (481)
486 PRK13601 putative L7Ae-like ri 22.9 2.6E+02 0.0055 23.7 5.8 43 87-130 14-56 (82)
487 PRK07327 enoyl-CoA hydratase; 22.8 1.4E+02 0.003 30.7 5.2 54 204-258 44-120 (268)
488 PRK10703 DNA-binding transcrip 22.8 5.3E+02 0.012 26.6 9.7 112 107-250 27-145 (341)
489 PLN02664 enoyl-CoA hydratase/d 22.7 1.6E+02 0.0035 30.3 5.6 16 243-258 110-125 (275)
490 cd01560 Thr-synth_2 Threonine 22.7 1.1E+03 0.024 26.4 14.7 240 73-336 132-426 (460)
491 PRK06444 prephenate dehydrogen 22.7 1.8E+02 0.0039 28.8 5.6 49 10-94 1-52 (197)
492 PRK08591 acetyl-CoA carboxylas 22.6 5.6E+02 0.012 28.2 10.3 51 86-139 63-114 (451)
493 PRK09674 enoyl-CoA hydratase-i 22.4 1.5E+02 0.0033 30.1 5.3 16 243-258 91-106 (255)
494 TIGR01182 eda Entner-Doudoroff 22.4 5.6E+02 0.012 25.5 9.1 106 5-140 4-113 (204)
495 PRK06127 enoyl-CoA hydratase; 22.4 1.7E+02 0.0037 30.0 5.7 54 204-258 43-120 (269)
496 PLN02260 probable rhamnose bio 22.3 5.8E+02 0.013 29.8 10.7 100 5-106 2-132 (668)
497 PF00710 Asparaginase: Asparag 22.2 2.7E+02 0.0059 29.4 7.3 80 206-305 216-297 (313)
498 PRK06190 enoyl-CoA hydratase; 22.2 1.7E+02 0.0037 30.0 5.6 16 243-258 93-108 (258)
499 cd06379 PBP1_iGluR_NMDA_NR1 N- 22.2 9.5E+02 0.021 25.4 12.9 79 159-243 152-238 (377)
500 COG1570 XseA Exonuclease VII, 22.1 3.3E+02 0.0071 30.4 8.0 88 159-251 133-232 (440)
No 1
>PLN02522 ATP citrate (pro-S)-lyase
Probab=100.00 E-value=1.2e-142 Score=1181.75 Aligned_cols=602 Identities=93% Similarity=1.429 Sum_probs=574.5
Q ss_pred CccCCCCCCCcEEEEeeCCcHHHHHHHhcCCeE------EEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCcc
Q 007482 1 MATGQLFSKTTQALFYNYKQLPIQRMLDFDFLC------VAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMAD 74 (602)
Q Consensus 1 ~~~~~l~~p~s~avv~g~~~~~~~~~~~~g~~~------V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vD 74 (602)
|.+..||+++|+++|+|...+.+|.|++|+|.+ |++++||+.++++|+|||+++.|+|+|.|++|+..++|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iPVf~tv~eA~~~~~~~~ 80 (608)
T PLN02522 1 MATGQLFSRTTQALFYNYKQLPVQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHGSIEAACKAHPTAD 80 (608)
T ss_pred CcceeeecCCceeEEEcCcHHHHHhhhccceeccCCCCeeEEEEcCCCCcceeEecCCEeeCccccchHHHHHHhCCCCc
Confidence 788999999999999999999999999999987 99999997778999999999999999999999998887899
Q ss_pred EEEEecCChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCcccccccCcccccccCCcccccc
Q 007482 75 VFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNII 154 (602)
Q Consensus 75 lavi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc~G~~~~~~~~l~~~~~~~~~~~ 154 (602)
..||+||++++.++++|+|.++|||.+||||+||+|.+|++|+++||++|+||+||||+|++||..+++|.+.+++++.+
T Consensus 81 ~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~rlIGPNc~Gii~p~~~kig~~~~~~~~~~ 160 (608)
T PLN02522 81 VFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKVVIGPATVGGIQAGAFKIGDTAGTLDNII 160 (608)
T ss_pred EEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCCEEECCCCCeeEccCccccccccccccccc
Confidence 99999999999999999999899999999999999999999999999999999999999999999888864333344444
Q ss_pred cccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHHHH
Q 007482 155 HCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL 234 (602)
Q Consensus 155 p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f 234 (602)
++..++||+||+|||||++++++++++.++|+|||++||+||+.++|+++.|+|+||.+||+||+|++|+|||++++++|
T Consensus 161 ~~~~~~pG~VgiVSqSGtL~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygEiGg~~e~~f 240 (608)
T PLN02522 161 QCKLYRPGSVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGRDEYSL 240 (608)
T ss_pred CcCCCCCCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEecCchhHHHH
Confidence 44556899999999999999999999999999999999999999778999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHhHhhc
Q 007482 235 VEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEE 314 (602)
Q Consensus 235 ~~~~r~~~~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~~~~~~~ 314 (602)
++++++++++||||++|+|||+.++++++++|||||++|++.+|+++|+++|||+|+++++|++||+++++.++.+|+.+
T Consensus 241 ~ea~~~a~~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv~vv~s~~El~~~~~~~~~~~~~~ 320 (608)
T PLN02522 241 VEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGAIVPTSFEALEAAIKETFEKLVEE 320 (608)
T ss_pred HHHHHHhcCCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHHHHHhC
Confidence 99999988999999999999996444899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcchHHHhhcCcccCcHHHHHHHhhhcCCCcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHH
Q 007482 315 GKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCT 394 (602)
Q Consensus 315 g~~~~~~~~~~~~~~~D~~~a~~~~Li~~~~~i~t~I~~~~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~ 394 (602)
|+|++..+.++|.+|+||+||.++|++++|++|.|+||+.+++++.|||+|++|||++.++|++++++||+|++|++.++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~I~~~~~~~~~~rG~~i~dlig~~~~f~~~~~ll~~g~~p~~~~~ 400 (608)
T PLN02522 321 GKIIPVKEVTPPQIPEDLNSAIKSGKVRAPTHIVSTISDDRGEEPCYAGVPMSSIIEKDYGVGDVISLLWFKRSLPRYCT 400 (608)
T ss_pred CceeecCCCCCCCCCcchHHHHhCCceecccceEEEeecCCCCeeEECCccHHHHhccCCCHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999964599999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCccchheeeeecCCCChHHHHHHhhccCCCCCcChHHHHHHHHHHHhccccCHHHHHHHHHHcC
Q 007482 395 QFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKG 474 (602)
Q Consensus 395 ~~l~~~Lvl~aDHg~~~st~~a~r~~ast~~~~~~av~agl~a~Gp~hgGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~ 474 (602)
++||++||++||||+|+||+|++|+++||++|+++||+|||+++||+||||++.|++||+++.+.+.+++++|+++++++
T Consensus 401 ~~ld~~Lvl~ADHG~~aSt~~aarv~AStg~dl~savaaGl~alGp~hGGA~e~a~~~l~ei~~~~~~~~~~V~~~~~~~ 480 (608)
T PLN02522 401 KFIEMCIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLTPYEFVEGMKKKG 480 (608)
T ss_pred HHHHHHHHHhccCCCCccHHHHHHHhhccCCcHHHHHHHHHHhcCCcccchHHHHHHHHHHHhccccCHHHHHHHHHhCC
Confidence 99999999999999999997799999999999999999999999999999999999999999876558999999999999
Q ss_pred CCcCCCCCCCCCCCCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHhhccCCCChHH
Q 007482 475 IRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQE 554 (602)
Q Consensus 475 ~~ipGfGH~v~~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e 554 (602)
++|||||||+|+.+++|||+++|++++++++..++++++++++|+++.+++++|+|||||++|+++++||+|.+|||++|
T Consensus 481 ~~IpGFGHrvy~~~~~DpRa~~L~~~~~~~~~~~~~~~~a~~vE~~~~~~~k~L~~NVDga~a~i~~~lg~p~~~ft~~e 560 (608)
T PLN02522 481 IRVPGIGHRIKSRDNRDKRVELLQKYARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFTKQE 560 (608)
T ss_pred CccccCCCCCCCCCCCChhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccCCCCcCcHhHHHHHHHHcCCCcccCcccc
Confidence 99999999999877889999999999999988999999999999987677799999999999999999999999999999
Q ss_pred HHHHHhhcchhhhHHHHhhhhhhhhHHHhhhhcCCCCCCCCCCccccC
Q 007482 555 IDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK 602 (602)
Q Consensus 555 ~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~~P~~r~~~~~i~y~~ 602 (602)
++|||.++.++++|+++|++||+||++||+++.||+|||+||+|+|+|
T Consensus 561 ~~~~~~~~~~~~lF~l~R~~GwiAH~~Eq~~~~~~~~r~~~~~i~y~~ 608 (608)
T PLN02522 561 IDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK 608 (608)
T ss_pred ccccccccccceEEEeehHHHHHHHHHHHHHhhCCcccCchhhccccC
Confidence 999999999999999999999999999999999999999999999986
No 2
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion]
Probab=100.00 E-value=4.8e-80 Score=643.64 Aligned_cols=599 Identities=58% Similarity=0.897 Sum_probs=571.0
Q ss_pred cCCCCCCCcEEEEeeCCcHHHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCC
Q 007482 3 TGQLFSKTTQALFYNYKQLPIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSF 82 (602)
Q Consensus 3 ~~~l~~p~s~avv~g~~~~~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~ 82 (602)
..+||.-+++|||+|+..|.++ |..-.+.-|.+..|++..+.++.+||.+-.=+|+|++..+..-++|++|.-+-+-+-
T Consensus 2 ~k~lfe~dtKAi~~~~q~ravq-lckr~~psVaa~~~~~~~~lqk~~~g~kei~IPv~~t~~~a~~~hp~~dv~~~faS~ 80 (600)
T KOG1254|consen 2 RKKLFEYDTKAIVWGMQQRAVQ-LCKRHFPSVAAIIYFTGDRLQKIYFGQKEILIPVEKTMENALVEHPEADVEPWFAST 80 (600)
T ss_pred CcchhhccchHhhhhhhhhhhh-hhhccCccceeeecccccchhheecCCceEEeechhhHHHHHhcCcccceeechhhh
Confidence 4679999999999999988766 555677778888898777889999998888899999999988888889999988888
Q ss_pred hhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCcccccccCcccccccCCcccccccccCCCCC
Q 007482 83 RSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPG 162 (602)
Q Consensus 83 ~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc~G~~~~~~~~l~~~~~~~~~~~p~~~~~~G 162 (602)
+.++...++......++.+-|+++|.+|.+..+++..+++.+..++||-+.|.+.|..+++|+.+++..+......++||
T Consensus 81 rsv~k~~m~~~k~~ki~lvAiiAegvpe~~~~kl~~~a~~k~~~iiGPaTvggVePg~fkignt~g~~dnil~~klyR~G 160 (600)
T KOG1254|consen 81 RSVAKPDMLALKRGKIGLVAIIAEGVPEADTRKLRAGAEVKGVGIIGPATVGGVEPGVFKIGNTGGMMDNILNSKLYRPG 160 (600)
T ss_pred hhhhcchHHHhhcCcceEEEEEecCCcHHHHHHHHhccccccceEEeeeeeccccCCccccCCCCcchhhhhhhcccCCc
Confidence 88888889999988899999999999999999999999999999999999999999999998888888888887889999
Q ss_pred cEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHhcC
Q 007482 163 SVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGK 242 (602)
Q Consensus 163 ~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~ 242 (602)
.+++||.||+|..++.+...+.-.|....+.+|++.+++.++.|.+-.+.+||.+|.|++..|+|..++..|+++.++.+
T Consensus 161 sv~~vS~sGGmsnE~nn~isrtt~g~~egiaiggd~~pgSTl~dhi~r~q~~~~vk~Iv~Lgevgg~~ey~~~e~~k~g~ 240 (600)
T KOG1254|consen 161 SVIYVSRSGGMSNELNNIISRTTDGPYEGIAIGGDRYPGSTLIDHIPREQHDPLVKFIVVLGEVGGDEEYTFLEANKEGK 240 (600)
T ss_pred cEEEEecCCCcchhhhhhhhheeccceeeeeccCCCccCchHhhhhhhhhccChhheEEeehhhcccceeehhhhhhcCC
Confidence 99999999999999999888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHhHhhcCCCCCCCC
Q 007482 243 VNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKE 322 (602)
Q Consensus 243 ~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~~~~~~~g~~~~~~~ 322 (602)
.+||+|++..|.++.-|+.+.++.|.|+-+....+++.+++++++.+|+.+.+++++|-...+..+..+++.|.+.+..+
T Consensus 241 ~tkPlVaw~~gtcA~~F~~evqfghagtaa~~~~eka~akn~al~~ag~~vpesf~~l~~~i~~~~e~lv~~Grvvp~~E 320 (600)
T KOG1254|consen 241 ITKPLVAWCIGTCADMFPLEVQFGHAGTAAFKNGEKAAAKNQALRDAGATVPESFDALGADIQETYEFLVPFGRVVPKTE 320 (600)
T ss_pred ccCCEEEEecCccccccchhhhccccchhhhcchhhhhhcchhhhhccccCccchhhhhhhhccchhcccccceecCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcchHHHhhcCcccCcHHHHHHHhhhcCCCcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHH
Q 007482 323 VTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIM 402 (602)
Q Consensus 323 ~~~~~~~~D~~~a~~~~Li~~~~~i~t~I~~~~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lv 402 (602)
..+|.+|+|+.|+.++++++.|..+.|.||.-+|.+++|.|.+.++.+.+.+.....+.++|+.+++++...++||.++.
T Consensus 321 v~pp~lp~d~saalklgllr~p~~i~t~Ia~~rGaeviYA~~p~~~~~a~elG~gg~~Sllw~~~~lp~Ya~kfie~~~m 400 (600)
T KOG1254|consen 321 VPPPGLPEDTSAALKLGLLRKPGRIWTSIAGGRGAEVIYADVPISLGYASELGNGGVYSLLWFQRRLPQYARKFIEICTM 400 (600)
T ss_pred CCCCCCChhhhhHhhhccccCCceEEEEecCCCCceeeecCchhhhhhHhhccccceEccccccccchHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999987766668888889999999999999999999999
Q ss_pred HhcCCCCCCccchheeeeecCCCChHHHHHHhhccCCCCCcChHHHHHHHHHHHhccccCHHHHHHHHHHcCCCcCCCCC
Q 007482 403 LCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGH 482 (602)
Q Consensus 403 l~aDHg~~~st~~a~r~~ast~~~~~~av~agl~a~Gp~hgGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGfGH 482 (602)
+.+|||..+|.++-+-+.+++++++++++++||+..|+++||+...+.|.+.+..+.+-.+.++|.++++.+.+|||.||
T Consensus 401 ~~aDhgp~Vsga~ntI~~~ra~kdl~sslv~gLltigdRfggald~aaR~f~~ayd~GL~~m~fv~~~~k~~~~V~Gigh 480 (600)
T KOG1254|consen 401 LTADHGPAVSGAGNTIANFRAGKDLFSSLVRGLLTIGDRFGGALDIAARRFGPAYDKGLAPMRFVGKMRKVPIEVYGIGH 480 (600)
T ss_pred ccCCCCceeEeccCceEEeccHHHHHHHHHHHHhhhhhhhcchhhHHHHhcChhhhccCchHHHhhhhhCCCceecCCcc
Confidence 99999999999999999999999999999999999999999999999999999988878899999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHhhccCCCChHHHHHHHhhc
Q 007482 483 RIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIG 562 (602)
Q Consensus 483 ~v~~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~ 562 (602)
|+..-.+||-|.++|+++++++++..|++++|.++|+++.+++++|.+|||+++|.+|.||-+.++|||.||++|||..+
T Consensus 481 riksi~n~d~rv~~lk~~~~~~fp~~~~~~yal~ve~~t~~k~~nlilnvdg~i~~~fvd~l~~~g~ft~~e~~e~i~ig 560 (600)
T KOG1254|consen 481 RIKSINNPDKRVEILKAFARKNFPATPLLDYALEVEKITTSKKPNLILNVDGAIAVLFVDLLRNSGMFTKEEADEYINIG 560 (600)
T ss_pred eeeccCCcccchhhHHHHHHhhCCCchHHHhhhhheeeeccCCCCEEEeccchhHHHHHHHHhccCCccHHHhhhheecc
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred chhhhHHHHhhhhhhhhHHHhhhhcCCCCCCCCCCccccC
Q 007482 563 YLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK 602 (602)
Q Consensus 563 ~~~~lf~~~R~~G~iAH~~Eq~~~~~P~~r~~~~~i~y~~ 602 (602)
..+++|+++|++|+|.|+++|+|+++|++|||||||.|.+
T Consensus 561 ~lng~fvl~rsig~igh~~dqkrlkq~lyrhpwdd~~y~~ 600 (600)
T KOG1254|consen 561 ALNGLFVLGRSIGFIGHYLDQKRLKQGLYRHPWDDISYVK 600 (600)
T ss_pred cccceEEeeeecchhhhhccHhhhhCccccCCchhhhhcC
Confidence 9999999999999999999999999999999999999985
No 3
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=100.00 E-value=6.8e-67 Score=572.02 Aligned_cols=333 Identities=17% Similarity=0.221 Sum_probs=299.8
Q ss_pred cCCCCCCCcEEEEee------CCcHHHHHHHhcCCeE-EEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccE
Q 007482 3 TGQLFSKTTQALFYN------YKQLPIQRMLDFDFLC-VAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADV 75 (602)
Q Consensus 3 ~~~l~~p~s~avv~g------~~~~~~~~~~~~g~~~-V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDl 75 (602)
+++||+|+||||||. .+.++++||+++||++ |++|+ |+. +++.|+|||+|++|+++ ++|+
T Consensus 1 l~~l~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vn-p~~---------~~i~G~~~~~sl~~lp~---~~Dl 67 (447)
T TIGR02717 1 LEHLFNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVN-PKA---------GEILGVKAYPSVLEIPD---PVDL 67 (447)
T ss_pred CccccCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEEC-CCC---------CccCCccccCCHHHCCC---CCCE
Confidence 368999999999975 2334999999999974 67776 754 48999999999999854 4899
Q ss_pred EEEecCChhhHHHHHHHhhCCCCcEEEEecCCCCHH------HHHHHHHHHHhCCCeeEcCCcccccccCcccccccCCc
Q 007482 76 FINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEA------DTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGT 149 (602)
Q Consensus 76 avi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~------~~~~l~~~a~~~g~riiGPNc~G~~~~~~~~l~~~~~~ 149 (602)
+||++|++. +++++++|.++|+|.++|+|+||+|. +|++|+++||++|+||+||||+|++||.. ++ +++
T Consensus 68 avi~vp~~~-~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlGPnc~G~~~~~~-~l---~~~ 142 (447)
T TIGR02717 68 AVIVVPAKY-VPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLGPNCLGIINTHI-KL---NAT 142 (447)
T ss_pred EEEecCHHH-HHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEecCeeeEecCCC-Ce---eee
Confidence 999999975 78899999999999999999999984 58999999999999999999999999998 77 577
Q ss_pred ccccccccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCC
Q 007482 150 IDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGR 229 (602)
Q Consensus 150 ~~~~~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~ 229 (602)
|.+.. ++||+||+|||||+++.++++|+.++|+|||++||+||++ |+++.|+|+||.+||+||+|++|+| +++
T Consensus 143 ~~~~~----~~~G~valvsqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~--d~~~~d~l~~l~~D~~t~~I~ly~E-~~~ 215 (447)
T TIGR02717 143 FAPTM----PKKGGIAFISQSGALLTALLDWAEKNGVGFSYFVSLGNKA--DIDESDLLEYLADDPDTKVILLYLE-GIK 215 (447)
T ss_pred cCCCC----CCCCCEEEEechHHHHHHHHHHHHhcCCCcceEEECCchh--hCCHHHHHHHHhhCCCCCEEEEEec-CCC
Confidence 75433 3699999999999999999999999999999999999999 9999999999999999999999999 999
Q ss_pred cHHHHHHHHHhcCCCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHHH
Q 007482 230 DEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFE 309 (602)
Q Consensus 230 ~~~~f~~~~r~~~~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~~ 309 (602)
|+++|++++|+++++||||++|+||++.| +++++|||||++|+| ++|+++|||+|+++++|++||+++++.|..
T Consensus 216 ~~~~f~~aa~~a~~~KPVv~~k~Grs~~g--~~aa~sHtgalag~~----~~~~a~~~~~Gv~~~~~~~el~~~~~~l~~ 289 (447)
T TIGR02717 216 DGRKFLKTAREISKKKPIVVLKSGTSEAG--AKAASSHTGALAGSD----EAYDAAFKQAGVIRADSIEELFDLARLLSN 289 (447)
T ss_pred CHHHHHHHHHHHcCCCCEEEEecCCChhh--hhhhhhccccccChH----HHHHHHHHHCCeEEeCCHHHHHHHHHHHhc
Confidence 99999999999988999999999999999 999999999999999 999999999999999999999999998887
Q ss_pred hHhhc--CCCCCCCCCCCCCCCcchHHHhhcCcccCcHHHHHHHhhhcCCCcccCCCCCc
Q 007482 310 KLVEE--GKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMS 367 (602)
Q Consensus 310 ~~~~~--g~~~~~~~~~~~~~~~D~~~a~~~~Li~~~~~i~t~I~~~~g~~i~~rg~dL~ 367 (602)
.+.+. ++.++++.++...+..|.....++.+..+++.....+....+.... .+|+++
T Consensus 290 ~~~~~g~rvaivs~sGG~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~~lp~~~~-~~NPlD 348 (447)
T TIGR02717 290 QPLPKGNRVAIITNAGGPGVIATDACEENGLELAELSEATKNKLRNILPPEAS-IKNPVD 348 (447)
T ss_pred CCCCCCCeEEEEECCchHHHHHHHHHHHcCCCcCCCCHHHHHHHHHhCccccc-cCCCEe
Confidence 66554 5567788888889999999999998888999999999887766443 677887
No 4
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=100.00 E-value=1.5e-64 Score=520.95 Aligned_cols=283 Identities=28% Similarity=0.421 Sum_probs=245.9
Q ss_pred CCCCCCCcEEEEeeCCcH----HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEe
Q 007482 4 GQLFSKTTQALFYNYKQL----PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINF 79 (602)
Q Consensus 4 ~~l~~p~s~avv~g~~~~----~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~ 79 (602)
..+++.+++++|+|++++ +++||+++||..|++|+ |+++. ++++|+|||+|++|+|+.. ++|+|||+
T Consensus 2 ~~~~~~~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVn-p~~~~-------~~v~G~~~y~sv~dlp~~~-~~DlAvi~ 72 (291)
T PRK05678 2 SILINKDTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVT-PGKGG-------TTVLGLPVFNTVAEAVEAT-GANASVIY 72 (291)
T ss_pred ceEecCCCeEEEeCCCchHHHHHHHHHHHCCCCEEEEEC-CCCCC-------CeEeCeeccCCHHHHhhcc-CCCEEEEE
Confidence 467899999999998664 99999999998788886 87421 6999999999999986522 27999999
Q ss_pred cCChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCcccccccCcccccccCCcccccccccCC
Q 007482 80 SSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLY 159 (602)
Q Consensus 80 vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc~G~~~~~~~~l~~~~~~~~~~~p~~~~ 159 (602)
||++. +++++++|.++|||.+||+|+||+++++++|+++||++|+||+||||+|++||.. ++ +++|... .+
T Consensus 73 vp~~~-v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlGPNc~Gi~~~~~-~~---~~~~~~~----~~ 143 (291)
T PRK05678 73 VPPPF-AADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTRLIGPNCPGIITPGE-CK---IGIMPGH----IH 143 (291)
T ss_pred cCHHH-HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCCccccccc-ce---eeecCCC----CC
Confidence 99975 7888999999999999999999998778899999999999999999999999998 54 4555322 24
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHH
Q 007482 160 RPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALK 239 (602)
Q Consensus 160 ~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r 239 (602)
++|+||+|||||+++.++++|+.++|+|||++||+||+++.|+++.|+|+||.+||+||+|++|+| +++++++. +++
T Consensus 144 ~~G~valiSQSGal~~~~~~~~~~~giG~s~~Vs~Gn~~~~dv~~~D~l~~l~~Dp~T~~I~lylE-~~~~~~~~--a~~ 220 (291)
T PRK05678 144 KKGRVGVVSRSGTLTYEAVAQLTDLGFGQSTCVGIGGDPINGTNFIDVLEAFEEDPETEAIVMIGE-IGGSAEEE--AAE 220 (291)
T ss_pred CCCCEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEe-cCCcHHHH--HHH
Confidence 699999999999999999999999999999999999996336999999999999999999999999 99998762 222
Q ss_pred hcC--CCCCEEEEEeCcCc-cCccccccccccCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHhH
Q 007482 240 QGK--VNKPVVAWVSGTCA-RLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKL 311 (602)
Q Consensus 240 ~~~--~~KPVv~~k~Gr~~-~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~~~~ 311 (602)
+++ ++||||++|+||++ .| ++ +|||||++++..+++++|+++|+|+|+++++|++||++++++++.++
T Consensus 221 ~~~~~~~KPVV~lk~Grs~~~g--~~--~sHTGala~~~~g~~~~~~a~~~q~Gvi~v~~~~el~~~~~~~~~~~ 291 (291)
T PRK05678 221 YIKANVTKPVVGYIAGVTAPPG--KR--MGHAGAIISGGKGTAEEKKEALEAAGVKVARTPSEIGELLKEVLKGL 291 (291)
T ss_pred HHHHcCCCCEEEEEecCCCCCC--Cc--ccchhhhccCCCCCHHHHHHHHHHCCCeECCCHHHHHHHHHHHHccC
Confidence 222 58999999999999 66 44 49999999444455599999999999999999999999999998753
No 5
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=100.00 E-value=1.8e-64 Score=519.22 Aligned_cols=278 Identities=28% Similarity=0.429 Sum_probs=243.7
Q ss_pred CCCCCCcEEEEeeCCcH----HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEec
Q 007482 5 QLFSKTTQALFYNYKQL----PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFS 80 (602)
Q Consensus 5 ~l~~p~s~avv~g~~~~----~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~v 80 (602)
.|++.+++++|.|++++ +++||+.|||+.|+||+ |++++ ++++|+|||+|++|+++.. ++|+|||+|
T Consensus 1 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~-p~~~~-------~~v~G~~~y~sv~dlp~~~-~~Dlavi~v 71 (286)
T TIGR01019 1 ILLDKDTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVT-PGKGG-------TTVLGLPVFDSVKEAVEET-GANASVIFV 71 (286)
T ss_pred CeecCCCcEEEecCCcHHHHHHHHHHHhCCCCEEEEEC-CCCCc-------ceecCeeccCCHHHHhhcc-CCCEEEEec
Confidence 36899999999999998 88999999999999998 87543 7999999999999987532 279999999
Q ss_pred CChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCcccccccCcccccccCCcccccccccCCC
Q 007482 81 SFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYR 160 (602)
Q Consensus 81 p~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc~G~~~~~~~~l~~~~~~~~~~~p~~~~~ 160 (602)
|+.. +++++++|.++|||.+||+|+||+|.+|++|+++||++|+||+||||+|++||.. ++ +++|... .++
T Consensus 72 pa~~-v~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~girilGPNc~Giin~~~-~~---~~~~~~~----~~~ 142 (286)
T TIGR01019 72 PAPF-AADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGTRLIGPNCPGIITPGE-CK---IGIMPGH----IHK 142 (286)
T ss_pred CHHH-HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCceEEcccc-cc---eeecccc----CCC
Confidence 9975 7888999999999999999999999999999999999999999999999999998 66 5666432 246
Q ss_pred CCcEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHh
Q 007482 161 PGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQ 240 (602)
Q Consensus 161 ~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~ 240 (602)
||+||+|||||+++.++++|+.++|+|||++||+||+++.|+++.|+|+||.+||+||+|++|+| +++++++ +++++
T Consensus 143 ~G~ValiSQSG~l~~~~~~~a~~~giG~S~~Vs~Gn~a~~dv~~~D~l~~l~~Dp~T~~I~lylE-~~~~~~~--~~~~~ 219 (286)
T TIGR01019 143 PGNVGIVSRSGTLTYEAVHQLTKAGFGQSTCVGIGGDPVNGTSFIDVLEAFEKDPETEAIVMIGE-IGGSAEE--EAADF 219 (286)
T ss_pred CCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEe-cCCchHH--HHHHH
Confidence 99999999999999999999999999999999999996447999999999999999999999999 9988876 32332
Q ss_pred c--CCCCCEEEEEeCcCc-cCccccccccccCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHH
Q 007482 241 G--KVNKPVVAWVSGTCA-RLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKET 307 (602)
Q Consensus 241 ~--~~~KPVv~~k~Gr~~-~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~ 307 (602)
+ .++||||++|+||++ .| ++ +||||||++...+++++|+++|||+|+++++|++||+++.+..
T Consensus 220 ~~~~~~KPVV~lk~Grs~~~g--~~--~sHTGala~~~~g~~~~~~aa~rqaGvi~v~~~~el~d~l~~~ 285 (286)
T TIGR01019 220 IKQNMSKPVVGFIAGATAPPG--KR--MGHAGAIISGGKGTAESKIEALEAAGVTVVKSPSDIGELLAEI 285 (286)
T ss_pred HHhcCCCCEEEEEecCCCCcc--cc--ccchhhhhcCCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHh
Confidence 2 278999999999998 66 54 4999999932223339999999999999999999999998764
No 6
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=100.00 E-value=2e-64 Score=520.48 Aligned_cols=280 Identities=29% Similarity=0.438 Sum_probs=246.6
Q ss_pred CCCCCCcEEEEeeCCcH----HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEec
Q 007482 5 QLFSKTTQALFYNYKQL----PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFS 80 (602)
Q Consensus 5 ~l~~p~s~avv~g~~~~----~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~v 80 (602)
-|++++++++|.|++++ ++++|++||+++|+||+ |++++ ++++|+|||+|++|+++. +++|+|||+|
T Consensus 7 ~~~~~~~~v~~~gi~~~~~~~~~~~~~~ygt~~~~gV~-p~~~~-------~~i~G~~~y~sv~dlp~~-~~~DlAvI~v 77 (300)
T PLN00125 7 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGG-------TEHLGLPVFNTVAEAKAE-TKANASVIYV 77 (300)
T ss_pred EEecCCCeEEEecCCCHHHHHHHHHHHHhCCcEEEEEC-CCCCC-------ceEcCeeccCCHHHHhhc-cCCCEEEEec
Confidence 47899999999999998 99999999999999998 87642 799999999999998753 2479999999
Q ss_pred CChhhHHHHHHHhhCCCCcEEEEecCCCCHH-HHHHHHHHHHhCCCeeEcCCcccccccCcccccccCCcccccccccCC
Q 007482 81 SFRSAAASSMAALKQPTIRVVAIIAEGVPEA-DTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLY 159 (602)
Q Consensus 81 p~~~~~~~~~e~~~~~gv~~~viis~Gf~E~-~~~~l~~~a~~~g~riiGPNc~G~~~~~~~~l~~~~~~~~~~~p~~~~ 159 (602)
|+.. +++++++|.++|||.+||+|+||+|. .|+++.++||++|+||+||||+|++||.. ++ +++|.... +
T Consensus 78 Pa~~-v~~al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~girviGPNc~Gii~~~~-~~---~~~~~~~~----~ 148 (300)
T PLN00125 78 PPPF-AAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGE-CK---IGIMPGYI----H 148 (300)
T ss_pred CHHH-HHHHHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhcCCEEECCCCceeecccc-cc---eeecCCCC----C
Confidence 9975 77888888889999999999999999 56777777999999999999999999987 55 45554332 4
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecC----CCcHHHHH
Q 007482 160 RPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELG----GRDEYSLV 235 (602)
Q Consensus 160 ~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g----~~~~~~f~ 235 (602)
+||+||+|||||+++.++++|+.++|+|||++||+||+.+.|+++.|+|+||.+||+||+|++|+| + ++|+++|+
T Consensus 149 ~~G~ValiSQSG~l~~~l~~~~~~~giG~S~~VS~Gn~~~adv~~~d~L~yl~~Dp~T~~I~ly~E-~~G~~~~d~~~f~ 227 (300)
T PLN00125 149 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFVKDPQTEGIILIGE-IGGTAEEDAAAFI 227 (300)
T ss_pred CCCcEEEEeCCccHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhhCCCCcEEEEEec-cCCchHHHHHHHH
Confidence 799999999999999999999999999999999999993339999999999999999999999999 6 67999999
Q ss_pred HHHHhcCCCCCEEEEEeCcCc-cCccccccccccCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHh
Q 007482 236 EALKQGKVNKPVVAWVSGTCA-RLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEK 310 (602)
Q Consensus 236 ~~~r~~~~~KPVv~~k~Gr~~-~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~~~ 310 (602)
+++++ +||||++|+|||+ .| ++ +|||||++....+++++|+++|||+|+++++|++||+++.+..+++
T Consensus 228 ~aa~~---~KPVV~lk~Grs~~~g--~~--~sHTGala~~~~G~~~~~~a~~rq~Gvi~v~~~~el~~~~~~~~~~ 296 (300)
T PLN00125 228 KESGT---EKPVVAFIAGLTAPPG--RR--MGHAGAIVSGGKGTAQDKIKALREAGVTVVESPAKIGVAMLEVFKE 296 (300)
T ss_pred HHhcC---CCCEEEEEecCCCCCC--CC--ccchhhhhcCCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHHh
Confidence 98763 8999999999997 66 55 4999999721223349999999999999999999999999988865
No 7
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=100.00 E-value=5.5e-62 Score=503.62 Aligned_cols=283 Identities=28% Similarity=0.437 Sum_probs=246.2
Q ss_pred CCCCCCCcEEEEeeCCcH----HHHHHHhcCCeEEEEEeCCCCCCccccccCceee--cccccCCHHHHhhcCCCccEEE
Q 007482 4 GQLFSKTTQALFYNYKQL----PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEI--AIPVHSTVEAACAAHPMADVFI 77 (602)
Q Consensus 4 ~~l~~p~s~avv~g~~~~----~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~--G~~~y~sv~~i~~~~p~vDlav 77 (602)
.-|++++|+++|+|++|+ ++++|++||+++|+||+ |++++ ++++ |+|||+|++|+++++ ++|++|
T Consensus 23 ~i~~~~~t~v~vqGitg~~g~~h~~~~~~ygt~iv~GV~-Pgkgg-------~~v~~~Gvpvy~sv~ea~~~~-~~D~av 93 (317)
T PTZ00187 23 RVWVNKNTKVICQGITGKQGTFHTEQAIEYGTKMVGGVN-PKKAG-------TTHLKHGLPVFATVKEAKKAT-GADASV 93 (317)
T ss_pred cEEEcCCCeEEEecCCChHHHHHHHHHHHhCCcEEEEEC-CCCCC-------ceEecCCccccCCHHHHhccc-CCCEEE
Confidence 357899999999999998 99999999999999998 98864 7899 999999999997654 489999
Q ss_pred EecCChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHH-hCCCeeEcCCcccccccCcccccccCCcccccccc
Q 007482 78 NFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYAR-SNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHC 156 (602)
Q Consensus 78 i~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~-~~g~riiGPNc~G~~~~~~~~l~~~~~~~~~~~p~ 156 (602)
|+||+++ +++++++|.++|||.+||+|+||+|.+..++.++++ ++|+||+||||+|++||..++++ .+|.
T Consensus 94 I~VPa~~-v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g~rliGPNc~Gii~p~~~~~g--------i~p~ 164 (317)
T PTZ00187 94 IYVPPPH-AASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNKTRLIGPNCPGIIKPGECKIG--------IMPG 164 (317)
T ss_pred EecCHHH-HHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCCCEEECCCCceEEcchhhccc--------cCCc
Confidence 9999987 555666677799999999999999998888877775 58999999999999999875553 2344
Q ss_pred cCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCC---cHHH
Q 007482 157 KLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGR---DEYS 233 (602)
Q Consensus 157 ~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~---~~~~ 233 (602)
..++||+||+|||||++++++++++.++|+|||++||+||+.+.|+++.|+|+||.+||+|++|++|+|++.. ++++
T Consensus 165 ~~~~~G~VgiVSqSGtl~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~ 244 (317)
T PTZ00187 165 HIHKKGKIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAE 244 (317)
T ss_pred CCCCCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEEEEeCCCCCCCCCHHHHHHHHhhCCCccEEEEEEecCCchhHHHHH
Confidence 4467999999999999999999999999999999999999988899999999999999999999999994333 3455
Q ss_pred HHHHHHhcCCCCCEEEEEeCcCc-cCccccccccccCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHhH
Q 007482 234 LVEALKQGKVNKPVVAWVSGTCA-RLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKL 311 (602)
Q Consensus 234 f~~~~r~~~~~KPVv~~k~Gr~~-~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~~~~ 311 (602)
|++. ..++||||+||+|||+ .| ++ +|||||++....+++++|+++|+|+|+++++|++||.++.+..++++
T Consensus 245 fi~~---~~~~KPVVa~~aGrsap~G--~r--~gHaGAi~~~~~G~~~~k~aal~qaGv~v~~~~~el~~~~~~~~~~~ 316 (317)
T PTZ00187 245 WIKN---NPIKKPVVSFIAGITAPPG--RR--MGHAGAIISGGKGTAPGKIEALEAAGVRVVKSPAQLGKTMLEVMKKK 316 (317)
T ss_pred HHHh---hcCCCcEEEEEecCCCCCC--Cc--ccchhhhhccCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHHhc
Confidence 5554 3468999999999997 56 44 59999999555566699999999999999999999999999887653
No 8
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=100.00 E-value=2.3e-54 Score=480.92 Aligned_cols=336 Identities=18% Similarity=0.235 Sum_probs=299.1
Q ss_pred CccCCCCCCCcEEEEeeCCc------HHHHHHHhcCCeE-EEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCc
Q 007482 1 MATGQLFSKTTQALFYNYKQ------LPIQRMLDFDFLC-VAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMA 73 (602)
Q Consensus 1 ~~~~~l~~p~s~avv~g~~~------~~~~~~~~~g~~~-V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~v 73 (602)
+.+++||+|+|||+||+... ...+||+++| ++ |++|+ |.. +++.|++||+|++|+|. .+
T Consensus 2 ~~l~~~~~p~svavigas~~~~~vg~~i~~nL~~~g-~g~i~PVn-p~~---------~~v~G~~ay~s~~~lp~---~~ 67 (598)
T COG1042 2 RDLERLFAPKSIAVIGASERPGKLGYEILRNLLEYG-QGKIYPVN-PKY---------DEVLGVKAYTSVADLPD---AP 67 (598)
T ss_pred CchhhhhCCceEEEeeccCCcchhHHHHHHHHHhcC-CCceEecC-ccc---------cccccccccchHhhCCC---CC
Confidence 34689999999999975332 2889999998 63 45554 533 58999999999999865 47
Q ss_pred cEEEEecCChhhHHHHHHHhhCCCCcEEEEecCCCCHH------HHHHHHHHHHhCCCeeEcCCcccccccCcccccccC
Q 007482 74 DVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEA------DTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTA 147 (602)
Q Consensus 74 Dlavi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~------~~~~l~~~a~~~g~riiGPNc~G~~~~~~~~l~~~~ 147 (602)
|++|++||+. .+++++++|.++||+.+|++++||.|. .++++++.|+++++|++||||+|++|+.. +| |
T Consensus 68 dlav~~v~~~-~~~~i~~~~~~kGv~~~i~is~gf~e~~~~~~~~e~~~~~~a~~~~~rligPn~~G~~~~~~-gl---n 142 (598)
T COG1042 68 DLAVIVVPAK-VVPEIVHELGEKGVKGAIVISAGFREAGEEGMELEKELVEAARKYGMRIIGPNCLGLINPII-GL---N 142 (598)
T ss_pred CeeEEEechh-hhHHHHHHhhccCCceEEEechhhhHHhhhHhHHHHHHHHHHHhcCceEecccccccccccc-cc---c
Confidence 9999999997 589999999999999999999999997 57888889999999999999999999998 67 7
Q ss_pred CcccccccccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecC
Q 007482 148 GTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELG 227 (602)
Q Consensus 148 ~~~~~~~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g 227 (602)
++|++..+.. .+|+++++||||+++..+++|+.+.++|+|+++|.||++ |+++.|+++|+.+|+.||+|.||+| +
T Consensus 143 a~f~p~~~~~--~~g~~afvsqsgav~~~il~~~~~~~~g~s~~vs~gn~a--d~~~~d~~~~~~~D~~tk~i~Ly~E-~ 217 (598)
T COG1042 143 ATFDPVFGLG--RGGGGAFVSQSGAVSFAILDWANEDGMGFSIKVSLGNAA--DRDESDLLEYLADDPRTKAIGLYIE-G 217 (598)
T ss_pred cccCcccccc--cCCCeEEEEechHHHHhccchhhhcCCceeEEEeecchh--hcCchHhHHHHhhCccceEEEEEec-c
Confidence 8887655411 389999999999999999999999999999999999999 9999999999999999999999999 9
Q ss_pred CCcHHHHHHHHHhcCCCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHH
Q 007482 228 GRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKET 307 (602)
Q Consensus 228 ~~~~~~f~~~~r~~~~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~ 307 (602)
++++++|++++|+..++||||++|+||++.+ ++++.||||+++|++ .+|+++|+|+|++++++++||++.++++
T Consensus 218 ~~~~r~fl~~a~~~~~~kpii~lk~gr~~~~--akAa~shTgslag~~----~~y~Aa~~~agvir~~~~~elf~~~k~l 291 (598)
T COG1042 218 VKDGRKFLNAARAAERKKPIIALKAGRSEAG--AKAAASHTGSLAGSD----EAYDAAFKQAGVIRVESIEELFDAAKAL 291 (598)
T ss_pred chhHHHHHHHHHHHhcCCCEEEEeccCCHHH--HHHHhcccccccccc----hhhHHHHHhhCceeccChHHHHHHHHHh
Confidence 9999999999999999999999999999999 999999999999999 9999999999999999999999999998
Q ss_pred HHhHhh--cCCCCCCCCCCCCCCCcchHHHhhcCcccCcHHHHHHHhhhcCCCcccCCCCCc
Q 007482 308 FEKLVE--EGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMS 367 (602)
Q Consensus 308 ~~~~~~--~g~~~~~~~~~~~~~~~D~~~a~~~~Li~~~~~i~t~I~~~~g~~i~~rg~dL~ 367 (602)
..+..+ .+..++++.++...+..|.-+..+..+...++.....+....+....+ .++++
T Consensus 292 ~~~~~~~g~~~~ivtn~Gg~gvla~D~l~~~g~~l~~~~~~~~~~l~~~Lp~~~~~-~NPvD 352 (598)
T COG1042 292 SHQPPPAGDRVAIITNGGGPGVLAADALEERGLKLAELSEETIEKLRSRLPPHASV-KNPVD 352 (598)
T ss_pred ccCCCCCCcceeEEecCCCccccchhHHHHcCCCcCCCCHHHHHHHHhhcCccccc-cCCee
Confidence 755444 577888999999999999999999999999999988888877766653 33444
No 9
>COG0372 GltA Citrate synthase [Energy production and conversion]
Probab=100.00 E-value=1.1e-54 Score=460.03 Aligned_cols=243 Identities=25% Similarity=0.351 Sum_probs=217.7
Q ss_pred chHHHhhcCcccCcHHHHHHHhh-hcCCCcccCCCCCcccccCCCcHHHHHHHhhhCCCCc-hhHHHHHHHHHHHhcCCC
Q 007482 331 DLNTAIKSGKVRAPTHIISTISD-DRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLP-RYCTQFIEICIMLCADHG 408 (602)
Q Consensus 331 D~~~a~~~~Li~~~~~i~t~I~~-~~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~-~~~~~~l~~~Lvl~aDHg 408 (602)
...++.+ +++..+.+++.+++ ..|++++.+..+++ +.+||++|+ ++..|+ +.+.++||++||||||||
T Consensus 128 ~~~~a~r--lia~~pti~a~~yr~~~g~~~i~p~~~~s-------~a~nfL~ml-~g~~p~~~~~~~a~d~~LiL~ADHe 197 (390)
T COG0372 128 RREAALR--LIAKLPTIAAAVYRYSRGEPPIAPDPDLS-------YAENFLYML-FGEPPSPPVEARAMDRALILHADHE 197 (390)
T ss_pred hHHHHHH--HHHHhhHHHHHHHHHhcCCCCccCCCCcc-------HHHHHHHHH-cCCCCCcHHHHHHHHHHHHHHhccC
Confidence 3455554 78888989888877 57999988999999 999999887 788888 489999999999999999
Q ss_pred CCCccchheeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhccccCHHHHHHHHHHcCCCcCCCCCCCCCC
Q 007482 409 PCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRG 487 (602)
Q Consensus 409 ~~~st~~a~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGfGH~v~~~ 487 (602)
+|+|| |++|+++||++|+|+|++|||+++ ||+||||+|.|++||+|+.+..+++++||++.+++|++||||||||||.
T Consensus 198 ~NAST-ftarvvaST~sd~ys~i~agi~aL~GPlHGGAne~v~~ml~ei~~~~~~~~~~v~~~l~~~~~imGFGHRVYk~ 276 (390)
T COG0372 198 LNAST-FTARVVASTGSDLYACIAAGIGALKGPLHGGANEAVMKMLEEIGSSGESAEAYVRKALDRKERIMGFGHRVYKN 276 (390)
T ss_pred CCcHH-HHHHHHHhcCCcHHHHHHHHHHHcCCCccCChHHHHHHHHHHHcccchhHHHHHHHHHhCCCCcCCCCCCCCCC
Confidence 99999 999999999999999999999999 9999999999999999999775559999999999999999999999994
Q ss_pred CCCcHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHh-c--cCCCccchhHHHHHHHHHHhhccCCCChHHHHHHHhh
Q 007482 488 DNRDKRVELLQKFARTHFP---SVKYMEYAVQVETYTLS-K--ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEI 561 (602)
Q Consensus 488 ~~~DPRa~~L~~~~~~~~~---~~~~~~~a~~ie~~~~~-~--~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~ 561 (602)
.|||+++|+++++++.. +.++++++.++|+.+.+ . .|+++||||||+|+++..||||.+|||+
T Consensus 277 --~DPRa~~lk~~a~~l~~~~g~~~~~~~a~~~e~~~l~~~~~~k~l~PNvDfysg~v~~~lGiP~~~fT~--------- 345 (390)
T COG0372 277 --YDPRAKVLKELAEKLGKELGDLKLYEIAEELEEIALEDLGFEKKLYPNVDFYSGIVYRALGIPTDMFTP--------- 345 (390)
T ss_pred --CCchHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHhhhcccCCCCccccchHHHHHHcCCCHHhhhh---------
Confidence 69999999999999843 34799999999999754 2 6899999999999999999999999999
Q ss_pred cchhhhHHHHhhhhhhhhHHHhhhhcCCCCCCCCCCccc
Q 007482 562 GYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLY 600 (602)
Q Consensus 562 ~~~~~lf~~~R~~G~iAH~~Eq~~~~~P~~r~~~~~i~y 600 (602)
||++||++||+||++||+...+++.|++|..+-+
T Consensus 346 -----lFaiaR~~GW~AH~~Eq~~~~~riiRPr~~Y~G~ 379 (390)
T COG0372 346 -----LFAIARTVGWIAHWIEQKEDGNKIIRPRALYTGP 379 (390)
T ss_pred -----hhhhhhHHHHHHHHHHHHhccCCccCChhhhcCc
Confidence 9999999999999999996656677776665543
No 10
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=6.5e-52 Score=413.11 Aligned_cols=285 Identities=33% Similarity=0.527 Sum_probs=268.6
Q ss_pred CCCCCCcEEEEeeCCcH----HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEec
Q 007482 5 QLFSKTTQALFYNYKQL----PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFS 80 (602)
Q Consensus 5 ~l~~p~s~avv~g~~~~----~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~v 80 (602)
-|++++++++|.|++++ +.++|++||+++|+|++ |++++ +++.|+|+|.+|+|+.+++ ++|++||+|
T Consensus 3 il~~k~tkvivqGitg~~gtfh~~~~l~yGt~~V~Gvt-PgkgG-------~~~~g~PVf~tV~EA~~~~-~a~~svI~V 73 (293)
T COG0074 3 ILLNKDTKVIVQGITGKQGTFHTEQMLAYGTKIVGGVT-PGKGG-------QTILGLPVFNTVEEAVKET-GANASVIFV 73 (293)
T ss_pred eeecCCCeEEEeccccccchHHHHHHHHhCCceeeccc-CCCCc-------eEEcCccHHHHHHHHHHhh-CCCEEEEec
Confidence 57999999999998887 99999999999999998 98874 7999999999999999887 599999999
Q ss_pred CChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCcccccccCcccccccCCcccccccccCCC
Q 007482 81 SFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYR 160 (602)
Q Consensus 81 p~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc~G~~~~~~~~l~~~~~~~~~~~p~~~~~ 160 (602)
|+.++.++++|++. +|++.++|||+|+|..|+.++++++++.|+|++||||.|+|.|..+++| ++|.+.++
T Consensus 74 p~~~aadai~EAid-a~i~liv~ITEgIP~~D~~~~~~~a~~~g~~iiGPncpGiI~Pg~~kiG--------imp~~i~~ 144 (293)
T COG0074 74 PPPFAADAILEAID-AGIKLVVIITEGIPVLDMLELKRYAREKGTRLIGPNCPGIITPGECKIG--------IMPGNIYK 144 (293)
T ss_pred CcHHHHHHHHHHHh-CCCcEEEEEeCCCCHHHHHHHHHHHHhcCCEEECCCCCccCcCCcceee--------echhhhcc
Confidence 99999999999988 8999999999999999999999999999999999999999999987886 35666789
Q ss_pred CCcEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHh
Q 007482 161 PGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQ 240 (602)
Q Consensus 161 ~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~ 240 (602)
||+|++||+||++.+++..++.+.|+|+|.+|++|++.+++++|.|+|+.|.+||+|++|++..|||...+++-++++++
T Consensus 145 ~G~IGiVSrSGTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmiGEiGG~aEe~AA~~i~~ 224 (293)
T COG0074 145 PGNIGIVSRSGTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMIGEIGGPAEEEAAEYIKA 224 (293)
T ss_pred CCceEEEecCcchHHHHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEEecCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHh
Q 007482 241 GKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEK 310 (602)
Q Consensus 241 ~~~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~~~ 310 (602)
-..+||||+|.+|++++ ..+.++|+||+.....+|+..+.++|+.+|+.+++++.|+.++.+.++.+
T Consensus 225 ~~~~KPVVa~iaG~tap---~gkrmGhaGaiv~~~~gta~~Ki~al~~aGv~v~etp~~l~~~l~~vl~~ 291 (293)
T COG0074 225 NATRKPVVAYIAGRTAP---EGKRMGHAGAIVSGGKGTAESKIAALEAAGVKVAETPAELGELLLEVLKG 291 (293)
T ss_pred hccCCCEEEEEeccCCC---ccchhhhhhhhhcCCCccHHHHHHHHHHcCCeecCCHHHHHHHHHHHhhc
Confidence 22559999999999996 78999999999999999999999999999999999999999988887754
No 11
>cd06101 citrate_synt Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the
Probab=100.00 E-value=1.7e-53 Score=434.90 Aligned_cols=222 Identities=23% Similarity=0.333 Sum_probs=201.9
Q ss_pred HHHHhhhcCC--CcccCCCCCcccccCCCcHHHHHHHhhhCCCC---------------chhHHHHHHHHHHHhcCCCCC
Q 007482 348 ISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSL---------------PRYCTQFIEICIMLCADHGPC 410 (602)
Q Consensus 348 ~t~I~~~~g~--~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~---------------~~~~~~~l~~~Lvl~aDHg~~ 410 (602)
.|+||...++ .+.|||+|+.||+++. +|+++.|+||+|+.| +++++++||++||+++|||+|
T Consensus 10 ~t~is~id~~~g~l~yRGy~i~dL~~~~-~f~ev~~LL~~G~lP~~~~nfl~m~~g~~p~~~~~~~l~~~Lvl~aDHg~n 88 (265)
T cd06101 10 ESEISVIDGDEGGLRYRGYPIEELAENS-SFEEVAYLLLTGELPSYAENFLYMLGGEEPDPEFAKAMDLALILHADHEGN 88 (265)
T ss_pred eeEEEEEeCCCCEEEECCeeHHHHHhcC-CHHHHHHHHHcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCCCCc
Confidence 3566776555 5889999999999998 999999999998775 678899999999999999999
Q ss_pred CccchheeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhcc-ccCHHHHHHHHHHcCCCcCCCCCCCCCCC
Q 007482 411 VSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDR-GLSAYEFVESMKKKGIRVPGIGHRIKRGD 488 (602)
Q Consensus 411 ~st~~a~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~~-~~~~~~~v~~~~~~~~~ipGfGH~v~~~~ 488 (602)
+|| |++|+++||++|+|+|++||++++ ||+||||++.|++||+++.+. .++++++|++.++++++|||||||+|+.
T Consensus 89 aST-~aaRv~aSt~ad~~~av~agl~al~Gp~HGGA~e~~~~~l~~i~~~~~~~~~~~v~~~~~~~~~i~GFGH~vy~~- 166 (265)
T cd06101 89 AST-FTARVVGSTLSDPYSAIAAAIAALKGPLHGGANEAVLKMLEEIGTPKNEPAEAYIRKKLNSKRVLMGFGHRVYKK- 166 (265)
T ss_pred hHH-HHHHHHHccCCcHHHHHHHHHHhCCCCCcCCHHHHHHHHHHHhCccccccHHHHHHHHHhcCCCccCCCCCCCCC-
Confidence 999 899999999999999999999998 999999999999999999764 1478999999999999999999999985
Q ss_pred CCcHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHhc--cCCCccchhHHHHHHHHHHhhccCCCChHHHHHHHhhcc
Q 007482 489 NRDKRVELLQKFARTHFP---SVKYMEYAVQVETYTLSK--ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGY 563 (602)
Q Consensus 489 ~~DPRa~~L~~~~~~~~~---~~~~~~~a~~ie~~~~~~--~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~ 563 (602)
.|||++.|+++++++.. .++++++++++|+++.+. .|+++||||||+|+++++||||.++||+
T Consensus 167 -~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~~e~~~~~~~~~k~l~pNvd~~~a~v~~~lG~p~~~~~~----------- 234 (265)
T cd06101 167 -YDPRATVLKKFAEKLLKEKGLDPMFELAAELEKIAPEVLYEKKLYPNVDFYSGVLYKAMGFPTELFTP----------- 234 (265)
T ss_pred -CCCChHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHhCCChHhhhh-----------
Confidence 48999999999999854 589999999999987664 3899999999999999999999999988
Q ss_pred hhhhHHHHhhhhhhhhHHHhhhhc
Q 007482 564 LNGLFVLARSIGLIGHTFDQKRLK 587 (602)
Q Consensus 564 ~~~lf~~~R~~G~iAH~~Eq~~~~ 587 (602)
+|+++|++||+||++||++..
T Consensus 235 ---lf~i~R~~Gw~AH~~Eq~~~~ 255 (265)
T cd06101 235 ---LFAVSRAVGWLAHLIEQREDG 255 (265)
T ss_pred ---HHHHHhHhHHHHHHHHHHhcC
Confidence 999999999999999998554
No 12
>PRK12350 citrate synthase 2; Provisional
Probab=100.00 E-value=6.9e-53 Score=443.27 Aligned_cols=227 Identities=24% Similarity=0.311 Sum_probs=207.6
Q ss_pred CcccCcHHHHHHHhh-hcC-CCcccCCCCCcccccCCCcHHHHHHHhhhCC---CCchhHHHHHHHHHHHhcCCCCCCcc
Q 007482 339 GKVRAPTHIISTISD-DRG-EEPCYAGVPMSSIVEQGYGVGDVISLLWFKR---SLPRYCTQFIEICIMLCADHGPCVSG 413 (602)
Q Consensus 339 ~Li~~~~~i~t~I~~-~~g-~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~---~~~~~~~~~l~~~Lvl~aDHg~~~st 413 (602)
+|+++.+.+++.+.+ +.| .+++.++.+++ +.+||++|+ ++. +|++.++++||++|||+||||+|+||
T Consensus 103 rliA~~pti~a~~~r~~~g~~~~i~p~~~ls-------~a~nfl~ml-~g~~~~~p~~~~~~~ld~~LiL~ADHg~naST 174 (353)
T PRK12350 103 DLARASVMALSAVAQSARGIGQPAVPQREID-------HAATILERF-MGRWRGEPDPAHVAALDAYWVSAAEHGMNAST 174 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcCCCCCCC-------HHHHHHHHh-ccCccCCCCHHHHHHHHHHHHHhccCCCCcch
Confidence 478889999888877 568 78888999999 999999998 677 78889999999999999999999999
Q ss_pred chheeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhccccCHHHHHHHHHHcCCCcCCCCCCCCCCCCCcH
Q 007482 414 AHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDK 492 (602)
Q Consensus 414 ~~a~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGfGH~v~~~~~~DP 492 (602)
|++|+++||++|+|+||+||++++ ||+||||++.|++||+++.+. ++++++|++++++|++|||||||+||. .||
T Consensus 175 -faaRv~aSt~adlysav~agi~aL~GplHGGA~e~v~~ml~ei~~~-~~~~~~v~~~l~~~~ri~GFGHrvYk~--~DP 250 (353)
T PRK12350 175 -FTARVIASTGADVAAALSGAIGALSGPLHGGAPARVLPMLDAVERT-GDARGWVKGALDRGERLMGFGHRVYRA--EDP 250 (353)
T ss_pred -HHHHHHhccCCcHHHHHHHHHhhcCCCcccChHHHHHHHHHHhCCh-hhHHHHHHHHHHCCCccccCCCCCCCC--CCC
Confidence 999999999999999999999998 999999999999999999876 689999999999999999999999986 489
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHh---c---cCCCccchhHHHHHHHHHHhhccCCCChHHHHHHHhhcchhh
Q 007482 493 RVELLQKFARTHFPSVKYMEYAVQVETYTLS---K---ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNG 566 (602)
Q Consensus 493 Ra~~L~~~~~~~~~~~~~~~~a~~ie~~~~~---~---~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~ 566 (602)
|+++|+++++++. ++++++++++|+++.+ . +|+|+||||||+|+++++||+|.++||+
T Consensus 251 Ra~~L~~~~~~l~--~~~~~ia~~le~~~~~~~~~~~~~r~l~pNVDfysa~v~~~lGip~~~ft~-------------- 314 (353)
T PRK12350 251 RARVLRATAKRLG--APRYEVAEAVEQAALAELRERRPDRPLETNVEFWAAVLLDFAGVPAHMFTA-------------- 314 (353)
T ss_pred CHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHHcCcChhhhcc--------------
Confidence 9999999999986 6899999999998754 1 6899999999999999999999999999
Q ss_pred hHHHHhhhhhhhhHHHhhhh---cCCCCCC
Q 007482 567 LFVLARSIGLIGHTFDQKRL---KQPLYRH 593 (602)
Q Consensus 567 lf~~~R~~G~iAH~~Eq~~~---~~P~~r~ 593 (602)
+|++||++||+|||+||++. .||..+|
T Consensus 315 lFai~R~~Gw~AH~~Eq~~~~~i~RP~~~Y 344 (353)
T PRK12350 315 MFTCGRTAGWSAHILEQKRTGRLVRPSARY 344 (353)
T ss_pred hHHhhhHHHHHHHHHHHHhcCCCcCCCcce
Confidence 99999999999999999843 3555444
No 13
>cd06102 citrate_synt_like_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=100.00 E-value=4.4e-53 Score=432.81 Aligned_cols=228 Identities=25% Similarity=0.308 Sum_probs=208.8
Q ss_pred cHHHHHHHhhhcCCCcccCCCCCcccccCCCcHHHHHHHhhhCCCC-------------------------------chh
Q 007482 344 PTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSL-------------------------------PRY 392 (602)
Q Consensus 344 ~~~i~t~I~~~~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~-------------------------------~~~ 392 (602)
.+.+.|+|+...++++.|||+|+.||+++. +|+++.++||.++.+ ++.
T Consensus 18 ~~~~~t~It~i~~~~~~yRG~da~~L~~~~-~~e~va~LLw~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (282)
T cd06102 18 EPVLESAITLITEGRLFYRGRDAVELAETA-TLEEVAALLWDGDEAARLLRLLAAALLGAAPSDAPVHRRLARAWGLDPA 96 (282)
T ss_pred CceEEeeeEEEeCCeeEEcCccHHHHHhcC-CHHHHHHHHHcCCchHHHHHHHHHHhccCCCCcccHHHHHHHHhcCCHH
Confidence 445778888888888999999999999999 999999999988877 778
Q ss_pred HHHHHHHHHHHhcCCCCCCccchheeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhccccCHHHHHHHHH
Q 007482 393 CTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMK 471 (602)
Q Consensus 393 ~~~~l~~~Lvl~aDHg~~~st~~a~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~~~~~~~~~v~~~~ 471 (602)
++++||++||++||||+|+|| |++|+++||++|+|+||+|||+++ ||+||||++.|++||+++.+. ++++++|++++
T Consensus 97 ~~~~l~~~LVL~ADHgln~St-~aaRv~AStgadl~~avaagl~al~Gp~HGGA~~~a~~~l~e~~~~-~~~~~~v~~~l 174 (282)
T cd06102 97 AADLLRRALVLLADHELNAST-FAARVAASTGASLYAAVLAGLAALSGPRHGGATARVEALLDEALRA-GDAEAAVRERL 174 (282)
T ss_pred HHHHHHHHHHHHhccCCCcHH-HHHHHHhccCCcHHHHHHHHHHhCCCCCccCHHHHHHHHHHHhcCC-ccHHHHHHHHH
Confidence 899999999999999999999 899999999999999999999998 999999999999999999876 58999999999
Q ss_pred HcCCCcCCCCCCCCCCCCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHhhccCCCC
Q 007482 472 KKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFS 551 (602)
Q Consensus 472 ~~~~~ipGfGH~v~~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~ft 551 (602)
++|++|||||||+|+. .|||++.|+++++++.. +++++++++|+++.+ .++++|||||++++++++||+|.++|+
T Consensus 175 ~~g~~ipGFGH~vy~~--~DPRa~~L~~~~~~~~~--~~~~~a~~ve~~~~~-~~gl~pNvD~a~a~l~~~lG~p~~~~~ 249 (282)
T cd06102 175 RRGEALPGFGHPLYPD--GDPRAAALLAALRPLGP--AAPPAARALIEAARA-LTGARPNIDFALAALTRALGLPAGAAF 249 (282)
T ss_pred HcCCcccCCCCCCCCC--CCccHHHHHHHHHHHhh--HHHHHHHHHHHHHHH-HHCCCCChHHHHHHHHHHcCCChhhcc
Confidence 9999999999999985 59999999999999876 999999999999865 567999999999999999998888877
Q ss_pred hHHHHHHHhhcchhhhHHHHhhhhhhhhHHHhhhh---cCCCCCC
Q 007482 552 KQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRL---KQPLYRH 593 (602)
Q Consensus 552 ~~e~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~---~~P~~r~ 593 (602)
+ +|+++|++||+||++||++. .||..+|
T Consensus 250 ~--------------lF~~~R~~GwiAH~~Eq~~~~~liRP~~~Y 280 (282)
T cd06102 250 A--------------LFALGRSAGWIAHALEQRAQGKLIRPRARY 280 (282)
T ss_pred h--------------HHHHHHHHHHHHHHHHHHhcCCCcCCCccc
Confidence 6 99999999999999999854 4666554
No 14
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-I, one of two CS isozymes in the gram-positive B. subtilis. The majority of CS activity in B. subtilis is provided by the other isozyme, BsCS-II (not included in this group). BsCS-
Probab=100.00 E-value=4.4e-52 Score=438.85 Aligned_cols=234 Identities=25% Similarity=0.339 Sum_probs=211.1
Q ss_pred chHHHhhcCcccCcHHHHHHHhh-hcCCCcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCC
Q 007482 331 DLNTAIKSGKVRAPTHIISTISD-DRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGP 409 (602)
Q Consensus 331 D~~~a~~~~Li~~~~~i~t~I~~-~~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~ 409 (602)
+.+++.+ +++..+.+.+.+.+ ..|+++++++.+++ +.+||++|+ ++++|++.++++||++||++||||+
T Consensus 102 ~~~~a~~--liA~~p~i~a~~~r~~~g~~~~~p~~~ls-------~a~nfl~ml-~g~~p~~~~~~~l~~~Lvl~ADHg~ 171 (349)
T cd06109 102 DLATALR--LLAAAPVITAALLRLSRGKQPIAPDPSLS-------HAADYLRML-TGEPPSEAHVRALDAYLVTVADHGM 171 (349)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHcCCCCcCCCCCCC-------HHHHHHHHh-CCCCCChHHHHHHHHHHhHhcccCC
Confidence 3455554 78888888888776 46888888999999 999999998 6888889999999999999999999
Q ss_pred CCccchheeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhccccCHHHHHHHHHHcCCCcCCCCCCCCCCC
Q 007482 410 CVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGD 488 (602)
Q Consensus 410 ~~st~~a~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGfGH~v~~~~ 488 (602)
|+|| |++|+++||++|+|+|++||++++ ||+||||+++|++||+++.+. ++++++|++.+++|++|||||||+||.
T Consensus 172 n~ST-~aaRv~aSt~ad~~savaagi~al~GplHGGA~e~v~~~l~ei~~~-~~~~~~v~~~l~~~~~i~GfGH~vyk~- 248 (349)
T cd06109 172 NAST-FTARVIASTEADLTSAVLGAIGALKGPLHGGAPGPVLDMLDAIGTP-ENAEAWLREALARGERLMGFGHRVYRV- 248 (349)
T ss_pred Cchh-hHHHHHhccCCcHHHHHHHHHHhccCCcccChHHHHHHHHHHhCCh-hhHHHHHHHHHHcCCeecCCCCCCCCC-
Confidence 9999 899999999999999999999998 999999999999999999876 689999999999999999999999996
Q ss_pred CCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHh------ccCCCccchhHHHHHHHHHHhhccCCCChHHHHHHHhhc
Q 007482 489 NRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLS------KANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIG 562 (602)
Q Consensus 489 ~~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~~------~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~ 562 (602)
.|||+++|+++++++...++++++++++|+++.+ .+++++||||||+|+++++||+|.++||+
T Consensus 249 -~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~~~~~~~~~~r~l~pNvD~~sg~l~~~lGip~~~~t~---------- 317 (349)
T cd06109 249 -RDPRADVLKAAAERLGAPDERLEFAEAVEQAALALLREYKPGRPLETNVEFYTALLLEALGLPREAFTP---------- 317 (349)
T ss_pred -CCcCHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhhHHHHHHHhCCChhhhhh----------
Confidence 4899999999999998889999999999987532 26899999999999999999999999999
Q ss_pred chhhhHHHHhhhhhhhhHHHhhhh---cCCCCC
Q 007482 563 YLNGLFVLARSIGLIGHTFDQKRL---KQPLYR 592 (602)
Q Consensus 563 ~~~~lf~~~R~~G~iAH~~Eq~~~---~~P~~r 592 (602)
+|++||++||+|||+||++. .||...
T Consensus 318 ----lF~isR~~Gw~AH~~Eq~~~~~~~RP~~~ 346 (349)
T cd06109 318 ----TFAAGRTAGWTAHVLEQARTGRLIRPQSR 346 (349)
T ss_pred ----HHHHHhHHHHHHHHHHHHhcCCCcCCCcc
Confidence 99999999999999999843 355443
No 15
>PRK06224 citrate synthase; Provisional
Probab=100.00 E-value=2.3e-52 Score=426.86 Aligned_cols=240 Identities=28% Similarity=0.379 Sum_probs=216.0
Q ss_pred cHHHHHHHhhhcCCCcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchheeeeecC
Q 007482 344 PTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARA 423 (602)
Q Consensus 344 ~~~i~t~I~~~~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~r~~ast 423 (602)
..+|.|+||+..++++.|||+|+.||+++. +|+++++++|+|+.|++++.++|+++||+++|||+++|| |++|+++||
T Consensus 6 ~~~~~T~i~~~~~~~l~yrG~~~~dL~~~~-sf~e~~~lll~G~lP~~~e~r~f~a~Lv~~adHg~~~St-~aar~~ast 83 (263)
T PRK06224 6 TKWWRTSISDVTPEEIYVRGYDLEDLIGKL-SFTDMIFLLLRGRLPTPNEARLLDAVLVALVDHGLTPSA-AAARMTASG 83 (263)
T ss_pred CCCCceeeeeecCCeeEECCccHHHHhhcC-CHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhccCCCcHH-HHHHHHHhc
Confidence 446889999998888999999999999998 999999999999999999999999999999999999999 999999999
Q ss_pred CCChHHHHHHhhccCCCCCcChHHHHHHHHHHHhcc-------ccCHHHHHHHHHHcCCCcCCCCCCCCCCCCCcHHHHH
Q 007482 424 GKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDR-------GLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVEL 496 (602)
Q Consensus 424 ~~~~~~av~agl~a~Gp~hgGa~~~a~~~l~~~~~~-------~~~~~~~v~~~~~~~~~ipGfGH~v~~~~~~DPRa~~ 496 (602)
++|+++|++||++++||+||||++.|++||+++... +++++++|+++++++++|||||||+|+. +|||++.
T Consensus 84 ~~~l~~av~agl~a~G~~hgGa~~~a~~~l~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~~y~~--~DPRa~~ 161 (263)
T PRK06224 84 GESLQGAVAAGLLALGSVHGGAGEQAAELLQEIAAAADAGADLDAAARAIVAEYRAAGKRVPGFGHPLHKP--VDPRAPR 161 (263)
T ss_pred CccHHHHHHHHHhhcccccCChhHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHcCCCcCCCCCCCCCC--CCchHHH
Confidence 999999999999999999999999999999999732 2357789999999999999999999985 5999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHh-ccCCCccchhHHHHHHHHHHhhccCCCChHHHHHHHhhcchhhhHHHHhhhh
Q 007482 497 LQKFARTHFPSVKYMEYAVQVETYTLS-KANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIG 575 (602)
Q Consensus 497 L~~~~~~~~~~~~~~~~a~~ie~~~~~-~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~R~~G 575 (602)
|+++++++...++++++++++++++.+ ++++++|||||++|+++++||+|.++|++ +|+++|++|
T Consensus 162 L~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~l~~Nvd~~~a~l~~~lG~p~~~~~~--------------lf~~~R~~G 227 (263)
T PRK06224 162 LLALAREAGVAGRHCRLAEALEAALAAAKGKPLPLNVDGAIAAILADLGFPPALARG--------------LFVISRAAG 227 (263)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHcCCChHHHhH--------------HHHHHHHHH
Confidence 999999998888999999999998865 45779999999999999999988877766 999999999
Q ss_pred hhhhHHHhhhhcCCC--CCCCCCCcccc
Q 007482 576 LIGHTFDQKRLKQPL--YRHPWEDVLYT 601 (602)
Q Consensus 576 ~iAH~~Eq~~~~~P~--~r~~~~~i~y~ 601 (602)
|+||++||++....+ .+..|+.+.|.
T Consensus 228 ~~AH~~Eq~~~~~~~r~~~~~~~~~~Y~ 255 (263)
T PRK06224 228 LVAHVWEELQQPIGFRIWDPAEEAVEYT 255 (263)
T ss_pred HHHHHHHHHhCCCCcCCCCChhhcceec
Confidence 999999998554211 23367888886
No 16
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains three Arabidopsis peroxisomal CS proteins, CYS1, -2, and -3 which are involved in the glyoxylate cycle. AthCYS1, in addition to a peroxisomal targeting sequence, has a predicted secretory signal peptide; it may be targeted to both the secretory pathway and the peroxisomes and is thought to be located in the extracellular matrix. AthCSY1 is expr
Probab=100.00 E-value=2.3e-51 Score=440.01 Aligned_cols=229 Identities=21% Similarity=0.305 Sum_probs=209.3
Q ss_pred CcccCcHHHHHHHhh-hcCCCcccCCCCCcccccCCCcHHHHHHHhhhCC-----CCchhHHHHHHHHHHHhcCCCCCCc
Q 007482 339 GKVRAPTHIISTISD-DRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKR-----SLPRYCTQFIEICIMLCADHGPCVS 412 (602)
Q Consensus 339 ~Li~~~~~i~t~I~~-~~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~-----~~~~~~~~~l~~~Lvl~aDHg~~~s 412 (602)
+|++..+.+++.+.+ ..|++++.++.+++ +.+||++|+ ++. +|++..+++||++||||||||+|+|
T Consensus 153 rliA~~p~i~A~~~r~~~g~~~~~p~~~ls-------~a~NFl~Ml-~g~~~~~~~p~~~~~~~l~~~liL~ADH~~naS 224 (410)
T cd06115 153 RILGKAPTIAAAAYRRRAGRPPNLPSQDLS-------YTENFLYML-DSLGERKYKPNPRLARALDILFILHAEHEMNCS 224 (410)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcCCCCCCC-------HHHHHHHHh-cCCCCcCCCCCHHHHHHHHHHHHHhhccCCCch
Confidence 479999999888876 57889999999999 999999998 565 6888899999999999999999999
Q ss_pred cchheeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhccccCHHHHHHHHHHcCCCcCCCCCCCCCCCCCc
Q 007482 413 GAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRD 491 (602)
Q Consensus 413 t~~a~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGfGH~v~~~~~~D 491 (602)
| |++|+++||++|+|+|++||++++ ||+||||+++|++||+++.+. ++++++|++.+++|++|||||||+||. .|
T Consensus 225 T-faarv~aSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ei~~~-~~~~~~v~~~~~~~~ri~GFGHrvYk~--~D 300 (410)
T cd06115 225 T-AAVRHLASSGVDVYTAVAGAVGALYGPLHGGANEAVLRMLAEIGTV-ENIPAFIEGVKNRKRKLSGFGHRVYKN--YD 300 (410)
T ss_pred H-HHHHHHHhcCCCHHHHHHHHHhhccCCcccchHHHHHHHHHHhCCh-HHHHHHHHHHHhcCCcccCCCCCCCCC--CC
Confidence 9 999999999999999999999999 999999999999999999876 689999999999999999999999996 48
Q ss_pred HHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHhc----cCCCccchhHHHHHHHHHHhhccCCCChHHHHHHHhhcch
Q 007482 492 KRVELLQKFARTHF---PSVKYMEYAVQVETYTLSK----ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYL 564 (602)
Q Consensus 492 PRa~~L~~~~~~~~---~~~~~~~~a~~ie~~~~~~----~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~ 564 (602)
||+++|+++++++. ...+++++++++|+++.+. +++++||||||+|+++++||||.++||+
T Consensus 301 PRa~~L~~~~~~l~~~~~~~~~~~~a~~~e~~~~~~~~~~~k~l~pNVD~ysa~l~~~lG~p~~~~t~------------ 368 (410)
T cd06115 301 PRAKIIKKLADEVFEIVGKDPLIEIAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTDFFPV------------ 368 (410)
T ss_pred ccHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhcccCCCCChHHHHHHHHHHcCCChHhhhh------------
Confidence 99999999999874 3578999999999976442 5899999999999999999999999999
Q ss_pred hhhHHHHhhhhhhhhHHHhh-----hhcCCCCCC
Q 007482 565 NGLFVLARSIGLIGHTFDQK-----RLKQPLYRH 593 (602)
Q Consensus 565 ~~lf~~~R~~G~iAH~~Eq~-----~~~~P~~r~ 593 (602)
+|++||++||+|||+||+ ++.||..+|
T Consensus 369 --lFa~sR~~Gw~AH~~Eq~~~~~~~i~RP~~~Y 400 (410)
T cd06115 369 --LFAIPRMAGYLAHWRESLDDPDTKIMRPQQLY 400 (410)
T ss_pred --HHHHHhhhhHHHHHHHHHhCCCCcccCccccc
Confidence 999999999999999997 345787777
No 17
>PRK14035 citrate synthase; Provisional
Probab=100.00 E-value=4.9e-51 Score=433.27 Aligned_cols=233 Identities=19% Similarity=0.297 Sum_probs=211.8
Q ss_pred hHHHhhcCcccCcHHHHHHHhh-hcCCCcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCC
Q 007482 332 LNTAIKSGKVRAPTHIISTISD-DRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPC 410 (602)
Q Consensus 332 ~~~a~~~~Li~~~~~i~t~I~~-~~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~ 410 (602)
.+.+.+ |++..+.++..+.+ .+|++++.++.+++ +.+||++|+ +|++|++.++++||++|||+||||+|
T Consensus 117 ~~~a~r--liA~~p~i~A~~~r~~~g~~~~~p~~~ls-------~~~nfl~ml-~g~~p~~~~~~~l~~~LvL~ADHg~n 186 (371)
T PRK14035 117 YERAIR--IQAKVASLVTAFARVRQGKEPLKPRPDLS-------YAANFLYML-RGELPTDIEVEAFNKALVLHADHELN 186 (371)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHhCCCCCCCCCCCCC-------HHHHHHHHh-ccCCCCHHHHHHHHHHHHHhccCCCC
Confidence 344444 78888988888876 46888889999998 889999888 68899999999999999999999999
Q ss_pred CccchheeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhccccCHHHHHHHHHHcCCCcCCCCCCCCCCCC
Q 007482 411 VSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDN 489 (602)
Q Consensus 411 ~st~~a~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGfGH~v~~~~~ 489 (602)
+|| |++|+++||++|+|+|++||++++ ||+||||++.|++||+++.+. ++++++|++++++|++|||||||+|+.
T Consensus 187 aST-~aaRv~aSt~ad~~sav~Agi~al~GplHGGA~e~v~~~l~~i~~~-~~~~~~v~~~~~~~~~l~GFGHrvyk~-- 262 (371)
T PRK14035 187 AST-FTARCAVSSLSDMYSGVVAAVGSLKGPLHGGANERVMDMLSEIRSI-GDVDAYLDEKFANKEKIMGFGHRVYKD-- 262 (371)
T ss_pred chH-HHHHHHHhcCCcHHHHHHHHHHhccCccccChHHHHHHHHHHhCCh-HHHHHHHHHHHhcCCcccCCCCCCCCC--
Confidence 999 999999999999999999999998 999999999999999999876 689999999999999999999999985
Q ss_pred CcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHhhccCCCChHHHHHHHhhcchhh
Q 007482 490 RDKRVELLQKFARTHF---PSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNG 566 (602)
Q Consensus 490 ~DPRa~~L~~~~~~~~---~~~~~~~~a~~ie~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~ 566 (602)
.|||+++|+++++++. ..++++++++++|+++.+ .++++||||||+|+++++||+|.++||+
T Consensus 263 ~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~ie~~~~~-~k~l~pNvD~~s~~l~~~lG~p~~~~t~-------------- 327 (371)
T PRK14035 263 GDPRAKYLREMSRKITKGTGREELFEMSVKIEKRMKE-EKGLIPNVDFYSATVYHVMGIPHDLFTP-------------- 327 (371)
T ss_pred CCccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH-hcCCCCChHHHHHHHHHHcCCChHhhhh--------------
Confidence 5999999999999884 567899999999998755 5789999999999999999999999988
Q ss_pred hHHHHhhhhhhhhHHHhh---hhcCCCCCC
Q 007482 567 LFVLARSIGLIGHTFDQK---RLKQPLYRH 593 (602)
Q Consensus 567 lf~~~R~~G~iAH~~Eq~---~~~~P~~r~ 593 (602)
+|++||++||+|||+||+ ++.||..+|
T Consensus 328 lf~i~R~~Gw~AH~~Eq~~~~~l~RP~~~Y 357 (371)
T PRK14035 328 IFAVSRVAGWIAHILEQYKDNRIMRPRAKY 357 (371)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCccCCCccc
Confidence 999999999999999997 445788777
No 18
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group is similar to gram-negative Escherichia coli (Ec) CS (type II, gltA) and Arabidopsis thaliana (Ath) peroxisomal (Per) CS. However EcCS and AthPerCS are not found in this group. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers w
Probab=100.00 E-value=4.6e-51 Score=435.21 Aligned_cols=230 Identities=22% Similarity=0.316 Sum_probs=208.7
Q ss_pred cCcccCcHHHHHHHhh-hcCCCcccCCCCCcccccCCCcHHHHHHHhhhCC-----CCchhHHHHHHHHHHHhcCCCCCC
Q 007482 338 SGKVRAPTHIISTISD-DRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKR-----SLPRYCTQFIEICIMLCADHGPCV 411 (602)
Q Consensus 338 ~~Li~~~~~i~t~I~~-~~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~-----~~~~~~~~~l~~~Lvl~aDHg~~~ 411 (602)
++|++..+.+++.+++ +.|++++.++.+++ +.+|||+|+ ++. +|++++.++||++|||+||||+|+
T Consensus 125 ~rliA~~p~i~A~~~r~~~g~~~~~p~~~ls-------~a~Nfl~Ml-~g~~~~~~~p~~~~~~~l~~~LiL~ADH~~n~ 196 (384)
T cd06116 125 IRLIGKMPTIAAFAYRHRLGLPYVLPDNDLS-------YTGNFLSML-FKMTEPKYEPNPVLAKALDVLFILHADHEQNC 196 (384)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccCCCCCCC-------HHHHHHHHh-CCCCCCCCCCCHHHHHHHHHHHhhhccCCCCc
Confidence 4588899999988776 57998999999999 999999998 565 688889999999999999999999
Q ss_pred ccchheeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhccccCHHHHHHHHHHcCCCcCCCCCCCCCCCCC
Q 007482 412 SGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNR 490 (602)
Q Consensus 412 st~~a~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGfGH~v~~~~~~ 490 (602)
|| |++|+++||++|+|+|++||++++ ||+||||+++|++||+++.+. ++++++|++.++++++|||||||+||. .
T Consensus 197 ST-faarv~aSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ei~~~-~~~~~~v~~~~~~~~ri~GFGHrvyk~--~ 272 (384)
T cd06116 197 ST-SAMRSVGSSRADPYTAVAAAVAALYGPLHGGANEAVLRMLQQIGSP-KNIPDFIETVKQGKERLMGFGHRVYKN--Y 272 (384)
T ss_pred hh-HHHhhhhccCCCHHHHHHHHHHhccCCcccchHHHHHHHHHHhCCh-HHHHHHHHHHHhcCCcccCCCCCCCCC--C
Confidence 99 999999999999999999999998 999999999999999999876 689999999999999999999999986 4
Q ss_pred cHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHhc----cCCCccchhHHHHHHHHHHhhccCCCChHHHHHHHhhcc
Q 007482 491 DKRVELLQKFARTHF---PSVKYMEYAVQVETYTLSK----ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGY 563 (602)
Q Consensus 491 DPRa~~L~~~~~~~~---~~~~~~~~a~~ie~~~~~~----~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~ 563 (602)
|||+++|+++++++. ..++++++++++|+++.+. +++++||||||+|+++++||+|.++||+
T Consensus 273 DPRa~~L~~~~~~l~~~~~~~~~~~ia~~~e~~~~~~~~~~~k~l~pNvD~ysa~l~~~lGip~~~~t~----------- 341 (384)
T cd06116 273 DPRARIIKKIADEVFEATGRNPLLDIAVELEKIALEDEYFISRKLYPNVDFYSGLIYQALGFPTEAFTV----------- 341 (384)
T ss_pred ChHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhhhcccCCCCChHHHHHHHHHHhCCChhhccc-----------
Confidence 999999999998873 4578999999999965432 5999999999999999999999999999
Q ss_pred hhhhHHHHhhhhhhhhHHHhhh-----hcCCCCCC
Q 007482 564 LNGLFVLARSIGLIGHTFDQKR-----LKQPLYRH 593 (602)
Q Consensus 564 ~~~lf~~~R~~G~iAH~~Eq~~-----~~~P~~r~ 593 (602)
+|++||++||+|||+||++ +.||..+|
T Consensus 342 ---lf~isR~~Gw~AH~~Eq~~~~~~~i~RP~~~Y 373 (384)
T cd06116 342 ---LFAIPRTSGWLAQWIEMLRDPEQKIARPRQVY 373 (384)
T ss_pred ---hhhhhhhchHHHHHHHHHhCcCCcccCccccc
Confidence 9999999999999999973 45777776
No 19
>PRK14036 citrate synthase; Provisional
Probab=100.00 E-value=1.5e-50 Score=430.73 Aligned_cols=229 Identities=22% Similarity=0.334 Sum_probs=209.0
Q ss_pred CcccCcHHHHHHHhh-hcCCCcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchhe
Q 007482 339 GKVRAPTHIISTISD-DRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNT 417 (602)
Q Consensus 339 ~Li~~~~~i~t~I~~-~~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~ 417 (602)
++++..+.+++.+.+ .+|++++.++.+++ +.+||++|+ ++++|++.++++||++||++||||+|+|| |++
T Consensus 124 rliA~~p~i~a~~~r~~~g~~~~~p~~~l~-------~a~nfl~ml-~g~~p~~~~~~~l~~~Lil~ADHg~naST-~aa 194 (377)
T PRK14036 124 RLIAKIPTMVAAFQLIRKGNDPIQPRDDLD-------YAANFLYML-TEREPDPLAARIFDRCLILHAEHTINAST-FSA 194 (377)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-------HHHHHHHHh-cCCCCCHHHHHHHHHHHhhhccCCCCchH-HHH
Confidence 478889998888876 46888888888888 888999888 68889999999999999999999999999 999
Q ss_pred eeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhccccCHHHHHHHHHHcCCCcCCCCCCCCCCCCCcHHHHH
Q 007482 418 IVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVEL 496 (602)
Q Consensus 418 r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGfGH~v~~~~~~DPRa~~ 496 (602)
|+++||++|+|+|++||++++ ||+||||++.|++||+++.+. ++++++|++.++++++|||||||+||. .|||+++
T Consensus 195 Rv~aSt~ad~ys~v~agi~aL~GplHGGA~e~v~~ml~~i~~~-~~~~~~v~~~~~~~~~i~GFGHrvyk~--~DPRa~~ 271 (377)
T PRK14036 195 RVTASTLTDPYAVIASAVGTLAGPLHGGANEDVLAMLEEIGSV-ENVRPYLDERLANKQKIMGFGHREYKV--KDPRATI 271 (377)
T ss_pred HHHHhcCCcHHHHHHHHHHHccCccccChHHHHHHHHHHhCCh-hhHHHHHHHHHHCCCceecCCCCCCCC--CCccHHH
Confidence 999999999999999999998 999999999999999999876 689999999999999999999999986 4899999
Q ss_pred HHHHHHHhC---CCChHHHHHHHHHHHHHhc--cCCCccchhHHHHHHHHHHhhccCCCChHHHHHHHhhcchhhhHHHH
Q 007482 497 LQKFARTHF---PSVKYMEYAVQVETYTLSK--ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLA 571 (602)
Q Consensus 497 L~~~~~~~~---~~~~~~~~a~~ie~~~~~~--~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~ 571 (602)
|+++++++. ..++++++++++|+++.+. +++++||||||+|+++++||+|.++||+ +|++|
T Consensus 272 L~~~~~~l~~~~~~~~~~~~a~~~e~~~~~~~~~k~l~pNvD~~sa~l~~~lGip~~~~t~--------------lf~~s 337 (377)
T PRK14036 272 LQKLAEELFARFGHDEYYEIALELERVAEERLGPKGIYPNVDFYSGLVYRKLGIPRDLFTP--------------IFAIA 337 (377)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccCCCCcChHHHHHHHHHHcCCChhhhhh--------------HHHHH
Confidence 999999873 5688999999999998652 5889999999999999999999999999 99999
Q ss_pred hhhhhhhhHHHhh---hhcCCCCCC
Q 007482 572 RSIGLIGHTFDQK---RLKQPLYRH 593 (602)
Q Consensus 572 R~~G~iAH~~Eq~---~~~~P~~r~ 593 (602)
|++||+|||+||+ ++.||..+|
T Consensus 338 R~~Gw~AH~~Eq~~~~~l~RP~~~Y 362 (377)
T PRK14036 338 RVAGWLAHWREQLGANRIFRPTQIY 362 (377)
T ss_pred hHHHHHHHHHHHHhcCcccCCCcee
Confidence 9999999999997 445777776
No 20
>PRK12351 methylcitrate synthase; Provisional
Probab=100.00 E-value=7.2e-51 Score=432.49 Aligned_cols=235 Identities=19% Similarity=0.201 Sum_probs=206.7
Q ss_pred cchHHHhhcCcccCcHHHHHHHhhh-cC-CCcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCC
Q 007482 330 EDLNTAIKSGKVRAPTHIISTISDD-RG-EEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADH 407 (602)
Q Consensus 330 ~D~~~a~~~~Li~~~~~i~t~I~~~-~g-~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDH 407 (602)
.++.++.+ |++..+.+++.+++. .+ +++..+..+++ +.+||++|+ ++++|++.+.++||++|||+|||
T Consensus 121 ~~~~~a~r--liA~~p~i~a~~~r~~~~~~~~~p~~~~ls-------~a~Nfl~ml-~g~~p~~~~~~~l~~~LvL~ADH 190 (378)
T PRK12351 121 GARDIADR--LLASLGSILLYWYHYSHNGRRIEVETDDDS-------IGGHFLHLL-HGKKPSESWVKAMHTSLILYAEH 190 (378)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHhCCCccCCCCCcCC-------HHHHHHHHh-cCCCCCHHHHHHHHHHHHHhccc
Confidence 33444544 799899998887764 44 44444455678 899999988 68889999999999999999999
Q ss_pred CCCCccchheeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhccccCHHHHHHHHHHcCCCcCCCCCCCCC
Q 007482 408 GPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKR 486 (602)
Q Consensus 408 g~~~st~~a~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGfGH~v~~ 486 (602)
|+|+|| |++|+++||++|+|+|++||++++ ||+||||++.|++||+++.+. ++++++|++.+++|++|||||||+||
T Consensus 191 ~~naST-~aaRvvaSt~ad~~sav~agi~aL~GplHGGA~e~v~~ml~~i~~~-~~~~~~v~~~l~~~~~l~GFGHrvyk 268 (378)
T PRK12351 191 EFNAST-FTARVIAGTGSDMYSAITGAIGALRGPKHGGANEVAFEIQQRYDTP-DEAEADIRRRVENKEVVIGFGHPVYT 268 (378)
T ss_pred CCchHH-HHHHHHhccCCCHHHHHHHHHHhccCCccCchHHHHHHHHHHhCCH-HHHHHHHHHHHhCCCccccCCCCCCC
Confidence 999999 899999999999999999999999 999999999999999999876 68999999999999999999999998
Q ss_pred CCCCcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHhhccCCCChHHHHHHHhhcc
Q 007482 487 GDNRDKRVELLQKFARTHF---PSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGY 563 (602)
Q Consensus 487 ~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~ie~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~ 563 (602)
. .|||+++|+++++++. ..++++++++++|+++.+ .++++||||||+|+++++||+|.++||+
T Consensus 269 ~--~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~ie~~~~~-~k~l~pNvD~ysg~l~~~lG~p~~~~t~----------- 334 (378)
T PRK12351 269 I--SDPRNKVIKEVAKKLSKEAGDTKLYDIAERLETVMWE-EKKMFPNLDWFSAVSYHMMGVPTAMFTP----------- 334 (378)
T ss_pred C--CCccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HhCCCCChHHHHHHHHHHcCCCHHhhhh-----------
Confidence 6 4899999999999863 456899999999998765 5799999999999999999999999999
Q ss_pred hhhhHHHHhhhhhhhhHHHhhhh---cCCCCCC
Q 007482 564 LNGLFVLARSIGLIGHTFDQKRL---KQPLYRH 593 (602)
Q Consensus 564 ~~~lf~~~R~~G~iAH~~Eq~~~---~~P~~r~ 593 (602)
+|++||++||+|||+||+.. .||..+|
T Consensus 335 ---lF~~sR~~Gw~AH~~Eq~~~~~~iRP~~~Y 364 (378)
T PRK12351 335 ---LFVISRTTGWAAHVIEQRQDNKIIRPSANY 364 (378)
T ss_pred ---HHHHHHHHHHHHHHHHHHhcCCccCCccee
Confidence 99999999999999999743 4676665
No 21
>PRK14034 citrate synthase; Provisional
Probab=100.00 E-value=1e-50 Score=430.92 Aligned_cols=233 Identities=19% Similarity=0.299 Sum_probs=210.4
Q ss_pred hHHHhhcCcccCcHHHHHHHhh-hcCCCcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCC
Q 007482 332 LNTAIKSGKVRAPTHIISTISD-DRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPC 410 (602)
Q Consensus 332 ~~~a~~~~Li~~~~~i~t~I~~-~~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~ 410 (602)
++.+.+ |++..+.++..+++ .++.+++.++.+++ +.+||++|+ +|++|++.++++||++||++||||+|
T Consensus 117 ~~~a~~--liA~~p~i~a~~~r~~~g~~~~~p~~~ls-------~a~nfl~ml-~g~~p~~~~~~~l~~~Lvl~aDHg~n 186 (372)
T PRK14034 117 YRKAVR--LQAKVPTIVAAFSRIRKGLDPVEPRKDLS-------LAANFLYML-NGEEPDEVEVEAFNKALVLHADHELN 186 (372)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHCCCCCCCCCCCCC-------HHHHHHHHh-cCCCCCHHHHHHHHHHHhHhccCCCC
Confidence 444554 78888888888776 47888888999988 888899887 78899999999999999999999999
Q ss_pred CccchheeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhccccCHHHHHHHHHHcCCCcCCCCCCCCCCCC
Q 007482 411 VSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDN 489 (602)
Q Consensus 411 ~st~~a~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGfGH~v~~~~~ 489 (602)
+|| |++|+++||++|+|+|++||++++ ||+||||++.|++||+++.+. ++++++|++.+++|++|||||||+||.
T Consensus 187 ~ST-~aaRv~aSt~~d~ysav~agi~al~GplHGGA~e~~~~~l~~i~~~-~~~~~~v~~~~~~~~~l~GFGHrvyk~-- 262 (372)
T PRK14034 187 AST-FTARVCVATLSDVYSGITAAIGALKGPLHGGANENVMKMLTEIGEE-ENVESYIHNKLQNKEKIMGFGHRVYRQ-- 262 (372)
T ss_pred ccH-HHHHHHhccCCcHHHHHHHHhcccCCCccCCHHHHHHHHHHHhCCH-HHHHHHHHHHHhCCCCcccCCCCCCCC--
Confidence 999 999999999999999999999998 999999999999999999876 689999999999999999999999985
Q ss_pred CcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHhhccCCCChHHHHHHHhhcchhh
Q 007482 490 RDKRVELLQKFARTHF---PSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNG 566 (602)
Q Consensus 490 ~DPRa~~L~~~~~~~~---~~~~~~~~a~~ie~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~ 566 (602)
.|||++.|+++++++. ..++++++++++|+++.+ .++++||||||+|+++++||+|.++||+
T Consensus 263 ~DPRa~~L~~~~~~~~~~~~~~~~~~~a~~~e~~~~~-~k~l~pNvD~~~a~l~~~lG~p~~~~t~-------------- 327 (372)
T PRK14034 263 GDPRAKHLREMSKRLTVLLGEEKWYNMSIKIEEIVTK-EKGLPPNVDFYSASVYHCLGIDHDLFTP-------------- 327 (372)
T ss_pred CCcCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-cCCCCCChHHHHHHHHHHcCCChHhccc--------------
Confidence 5999999999999884 457999999999998765 6899999999999999999999999988
Q ss_pred hHHHHhhhhhhhhHHHhhh---hcCCCCCC
Q 007482 567 LFVLARSIGLIGHTFDQKR---LKQPLYRH 593 (602)
Q Consensus 567 lf~~~R~~G~iAH~~Eq~~---~~~P~~r~ 593 (602)
+|++||++||+|||+||+. +.||..+|
T Consensus 328 lf~i~R~~Gw~AH~~Eq~~~~~l~Rp~~~Y 357 (372)
T PRK14034 328 IFAISRMSGWLAHILEQYENNRLIRPRADY 357 (372)
T ss_pred hhHHHhHHHHHHHHHHHHhcCCccCCCcee
Confidence 9999999999999999973 34676666
No 22
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate though it has partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate and prefer PrCoA as substrate, but can also use AcCoA. Re 2-MCS1 can use butyryl-CoA and valeryl-CoA at a lower rate. A second Ralstonia eutropha 2MC
Probab=100.00 E-value=1.1e-50 Score=429.45 Aligned_cols=233 Identities=19% Similarity=0.219 Sum_probs=206.4
Q ss_pred hHHHhhcCcccCcHHHHHHHhhh-cCCCcc-cCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCC
Q 007482 332 LNTAIKSGKVRAPTHIISTISDD-RGEEPC-YAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGP 409 (602)
Q Consensus 332 ~~~a~~~~Li~~~~~i~t~I~~~-~g~~i~-~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~ 409 (602)
++.+.+ |++..+.+++.+++. .+.+++ .++.+++ +.+||++|+ ++++|++.+.++||++|||+||||+
T Consensus 111 ~~~a~r--lia~~p~i~a~~~r~~~~~~~~~p~~~~~s-------~a~nfl~ml-~g~~p~~~~~~~l~~~LvL~ADH~~ 180 (363)
T cd06108 111 YEIAIR--LLAIFPSILLYWYHYSHSGKRIETETDEDS-------IAGHFLHLL-HGKKPGELEIKAMDVSLILYAEHEF 180 (363)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHcCCCccCCCCCCCC-------HHHHHHHHh-cCCCCCHHHHHHHHHHhhhhccCCC
Confidence 344554 788899998887663 444444 4466677 888999988 6889999999999999999999999
Q ss_pred CCccchheeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhccccCHHHHHHHHHHcCCCcCCCCCCCCCCC
Q 007482 410 CVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGD 488 (602)
Q Consensus 410 ~~st~~a~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGfGH~v~~~~ 488 (602)
|+|| |++|+++||++|+|+|++||++++ ||+||||++.|++||+++.+. ++++++|++++++|++|||||||+||.
T Consensus 181 n~St-~aaRv~aSt~ad~~sav~agi~al~GplHGGA~e~v~~~l~~i~~~-~~~~~~v~~~l~~~~~i~GFGHrvyk~- 257 (363)
T cd06108 181 NAST-FAARVTASTLSDFYSAITGAIGTLRGPLHGGANEAAMELIERFKSP-EEAEQGLLEKLERKELIMGFGHRVYKE- 257 (363)
T ss_pred cchH-HHHHHHhccCCCHHHHHHHHHHhccCCcccchHHHHHHHHHHhCCH-HHHHHHHHHHHhcCCeecCCCCCCCCC-
Confidence 9999 999999999999999999999998 999999999999999999876 689999999999999999999999986
Q ss_pred CCcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHhhccCCCChHHHHHHHhhcchh
Q 007482 489 NRDKRVELLQKFARTHF---PSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLN 565 (602)
Q Consensus 489 ~~DPRa~~L~~~~~~~~---~~~~~~~~a~~ie~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~ 565 (602)
.|||++.|+++++++. ..++++++++++|+++.+ .++++||||||+|+++++||+|.++||+
T Consensus 258 -~DPRa~~L~~~a~~l~~~~~~~~~~~~a~~ie~~~~~-~~~l~pNvD~~sa~l~~~lG~p~~~~t~------------- 322 (363)
T cd06108 258 -GDPRSDIIKKWSKKLSEEGGDPLLYQISERIEEVMWE-EKKLFPNLDFYSASAYHFCGIPTELFTP------------- 322 (363)
T ss_pred -CCccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-hcCCCcChHHHHHHHHHHcCCChhhhhh-------------
Confidence 4899999999998863 568999999999998865 5899999999999999999999999988
Q ss_pred hhHHHHhhhhhhhhHHHhhhh---cCCCCCC
Q 007482 566 GLFVLARSIGLIGHTFDQKRL---KQPLYRH 593 (602)
Q Consensus 566 ~lf~~~R~~G~iAH~~Eq~~~---~~P~~r~ 593 (602)
+|++||++||+|||+||+.. .||..+|
T Consensus 323 -iF~i~R~~Gw~AH~~Eq~~~~~~iRP~~~Y 352 (363)
T cd06108 323 -IFVMSRVTGWAAHIMEQRANNRLIRPSADY 352 (363)
T ss_pred -HHHHHHHHHHHHHHHHHHhcCCCcCcccee
Confidence 99999999999999999743 4676666
No 23
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CCL cleaves citryl-CoA (CiCoA) to acetyl-CoA (AcCoA) and oxaloacetate (OAA). ACL catalyzes an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. In fungi, yeast, plants, and animals ACL is cytosolic and generates AcCoA for lipogenesis. ACL may be required for fruiting body maturation in the filamentous fungus Sordaria macrospore. In several groups of autotrophic prokaryotes and archaea, ACL carries out the citrate-cleavage reaction of the reductive tricarboxylic acid (rTCA) cycle. In the family Aquificaceae this latter reaction in the rTCA cycle is carried out via a two enzyme system the second enzyme of which is CCL; the first enzyme is citryl-CoA synthetase (CC
Probab=100.00 E-value=2.7e-50 Score=403.76 Aligned_cols=220 Identities=45% Similarity=0.709 Sum_probs=204.3
Q ss_pred CCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCC-CCccchheeeeecCC-CChHHHHHHhhccCCC
Q 007482 363 GVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGP-CVSGAHNTIVTARAG-KDLVSSLVSGLLTIGP 440 (602)
Q Consensus 363 g~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~-~~st~~a~r~~ast~-~~~~~av~agl~a~Gp 440 (602)
|+|+.||+++. +|+++++++++|+.|++++.++|+.+|++++|||+ |+|| +++|+++||+ +++++|++||++++||
T Consensus 1 G~~~~dL~~~~-sf~e~~~lml~G~~P~~~e~~~f~~~Lvl~adhg~~~~St-~aar~~astg~~~~~~~vaag~~a~G~ 78 (227)
T cd06100 1 GYDLSDLIGKI-SFGDVLYLLLKGRLPTPYEARLLEALLVALADHGPATPSA-HAARLTASAGPEDLQSAVAAGLLGIGD 78 (227)
T ss_pred CCCHHHHHhCC-CHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccCCCCCchH-HHHHHHHHcCCccHHHHHHHHHhccCC
Confidence 68888999988 99999999999999999999999999999999999 9999 9999999999 9999999999999999
Q ss_pred CCcChHHHHHHHHHHHhccc----cCHHHHHHHHHHcCCCcCCCCCCCCCCCCCcHHHHHHHHHHHHhCCCChHHHHHHH
Q 007482 441 RFGGAIDDAARYFKDAYDRG----LSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQ 516 (602)
Q Consensus 441 ~hgGa~~~a~~~l~~~~~~~----~~~~~~v~~~~~~~~~ipGfGH~v~~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~ 516 (602)
+|||+++.+++|++++.+.. ++++++|+++++++++|||||||+|+. +|||++.|+++++++...+++++++.+
T Consensus 79 ~hgga~e~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~ipGfGH~v~~~--~DPRa~~L~~~~~~~~~~~~~~~~~~~ 156 (227)
T cd06100 79 RFGGAGEGAARLFKEAVDSGDALDAAAAEFVAEYRAAKKRIPGFGHPVHKN--PDPRVPRLLELARELGPAGPHLDYALA 156 (227)
T ss_pred cccChHHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCC--CCchHHHHHHHHHHhccCCHHHHHHHH
Confidence 99999999999999998752 489999999999999999999999985 599999999999999888899999999
Q ss_pred HHHHHHh-ccCCCccchhHHHHHHHHHHhhccCCCChHHHHHHHhhcchhhhHHHHhhhhhhhhHHHhhhhcCCCCCCCC
Q 007482 517 VETYTLS-KANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPW 595 (602)
Q Consensus 517 ie~~~~~-~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~~P~~r~~~ 595 (602)
+|+++.+ ++++++|||||++|+++++||||+++|++ +|+++|++||+||++||++...++.+.+|
T Consensus 157 ~~~~~~~~~~~~l~~Nvd~~~a~~~~~lG~p~~~~~~--------------lf~~~R~~G~~AH~~Eq~~~~~~~~~~~~ 222 (227)
T cd06100 157 VEKALTAAKGKPLPLNVDGAIAAILLDLGFPPGALRG--------------LFVLGRSPGLIAHALEEKRLGQPLYRHPW 222 (227)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHhCCCHHHHHH--------------HHHHHHHHHHHHHHHHHHhccCCCCCCch
Confidence 9998765 34579999999999999999987776666 99999999999999999977778999999
Q ss_pred CCccc
Q 007482 596 EDVLY 600 (602)
Q Consensus 596 ~~i~y 600 (602)
++|+|
T Consensus 223 ~~i~y 227 (227)
T cd06100 223 DDIEY 227 (227)
T ss_pred hhccC
Confidence 99998
No 24
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate, but has a partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate, prefer PrCoA as substrate, but can also can use AcCoA. Re 2-MCS1 at a low rate can use butyryl-CoA and valeryl-CoA. A second Ralstonia eu
Probab=100.00 E-value=2.1e-50 Score=428.20 Aligned_cols=233 Identities=20% Similarity=0.209 Sum_probs=205.7
Q ss_pred hHHHhhcCcccCcHHHHHHHhhh-cCCCcccC-CCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCC
Q 007482 332 LNTAIKSGKVRAPTHIISTISDD-RGEEPCYA-GVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGP 409 (602)
Q Consensus 332 ~~~a~~~~Li~~~~~i~t~I~~~-~g~~i~~r-g~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~ 409 (602)
...+. +|++..+.++..+.+. .+.+.+.+ ..+++ +.+||++|+ ++++|++.+.++||++|||+||||+
T Consensus 114 ~~~a~--rlia~~p~i~a~~~r~~~~~~~i~p~~~~~s-------~a~Nfl~ml-~g~~p~~~~~~~l~~~LvL~ADHg~ 183 (366)
T cd06117 114 RDIAD--RLMASLGSILLYWYHYSHNGKRIEVETDDDS-------IGGHFLHLL-HGEKPSESWEKAMHISLILYAEHEF 183 (366)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHhcCCCccCCCCCcCC-------HHHHHHHHh-cCCCCCHHHHHHHHHHHHHhcccCC
Confidence 34444 4788888898887774 45444444 45677 889999988 6888999999999999999999999
Q ss_pred CCccchheeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhccccCHHHHHHHHHHcCCCcCCCCCCCCCCC
Q 007482 410 CVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGD 488 (602)
Q Consensus 410 ~~st~~a~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGfGH~v~~~~ 488 (602)
|+|| |++|+++||++|+|+|++||++++ ||+||||++.|++||+++.+. ++++++|++.+++|++|||||||+||.
T Consensus 184 n~ST-~aarv~aSt~ad~~sav~agi~aL~GplHGGA~e~v~~~l~~i~~~-~~~~~~i~~~~~~~~~i~GFGHrvyk~- 260 (366)
T cd06117 184 NAST-FTARVIAGTGSDMYSAITGAIGALRGPKHGGANEVAFEIQQRYESA-DEAEADIRRRVENKEVVIGFGHPVYTI- 260 (366)
T ss_pred chHH-HHHHHHHccCCcHHHHHHHHHHhccCCccCchHHHHHHHHHHhCCH-HHHHHHHHHHHhcCCcccCCCCCCCCC-
Confidence 9999 999999999999999999999998 999999999999999999876 689999999999999999999999986
Q ss_pred CCcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHhhccCCCChHHHHHHHhhcchh
Q 007482 489 NRDKRVELLQKFARTHF---PSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLN 565 (602)
Q Consensus 489 ~~DPRa~~L~~~~~~~~---~~~~~~~~a~~ie~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~ 565 (602)
.|||+++|+++++++. ...+++++++++|+++.+ .++++||||||+|+++++||||.++||+
T Consensus 261 -~DPRa~~L~~~~~~l~~~~~~~~~~~~~~~ie~~~~~-~k~l~pNvD~~s~~l~~~lG~p~~~~t~------------- 325 (366)
T cd06117 261 -ADPRNQVIKEVAKQLSKEGGDMKMFDIAERLETVMWE-EKKMFPNLDWFSAVSYHMMGVPTAMFTP------------- 325 (366)
T ss_pred -CCchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HhCCCcCcHHHHHHHHHHcCcChhhhhH-------------
Confidence 4899999999999884 346889999999998754 5799999999999999999999999999
Q ss_pred hhHHHHhhhhhhhhHHHhhhh---cCCCCCC
Q 007482 566 GLFVLARSIGLIGHTFDQKRL---KQPLYRH 593 (602)
Q Consensus 566 ~lf~~~R~~G~iAH~~Eq~~~---~~P~~r~ 593 (602)
+|++||++||+|||+||+.. .||..+|
T Consensus 326 -lf~isR~~Gw~AH~~Eq~~~~~~~RP~~~Y 355 (366)
T cd06117 326 -LFVIARTTGWSAHIIEQRQDGKIIRPSANY 355 (366)
T ss_pred -HHHHHHHHHHHHHHHHHHhcCCCcccccee
Confidence 99999999999999999743 4676666
No 25
>TIGR01798 cit_synth_I citrate synthase I (hexameric type). This model describes one of several distinct but closely homologous classes of citrate synthase, the protein that brings carbon (from acetyl-CoA) into the TCA cycle. This form, class I, is known to be hexameric and allosterically inhibited by NADH in Escherichia coli, Acinetobacter anitratum, Azotobacter vinelandii, Pseudomonas aeruginosa, etc. In most species with a class I citrate synthase, a dimeric class II isozyme is found. The class II enzyme may act primarily on propionyl-CoA to make 2-methylcitrate or be bifunctional, may be found among propionate utilization enzymes, and may be constitutive or induced by propionate. Some members of this model group as class I enzymes, and may be hexameric, but have shown regulatory properties more like class II enzymes.
Probab=100.00 E-value=5e-50 Score=429.85 Aligned_cols=230 Identities=20% Similarity=0.333 Sum_probs=206.7
Q ss_pred cCcccCcHHHHHHHhh-hcCCCcccCCCCCcccccCCCcHHHHHHHhhhCC-----CCchhHHHHHHHHHHHhcCCCCCC
Q 007482 338 SGKVRAPTHIISTISD-DRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKR-----SLPRYCTQFIEICIMLCADHGPCV 411 (602)
Q Consensus 338 ~~Li~~~~~i~t~I~~-~~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~-----~~~~~~~~~l~~~Lvl~aDHg~~~ 411 (602)
++|++..+.+++.+++ +.|++++.++.+++ +.+||++|+ +|. +|++.++++||++||||||||+|+
T Consensus 152 ~~liA~~p~i~A~~yr~~~g~~~i~p~~~ls-------~a~Nfl~Ml-~g~~~~~~~p~~~~~~~l~~~LiL~aDHg~n~ 223 (412)
T TIGR01798 152 IRLIAKIPTLAAMSYKYSIGQPFVYPRNDLS-------YAENFLHMM-FATPCEDYKVNPVLARAMDRIFILHADHEQNA 223 (412)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcCCCCCCC-------HHHHHHHHh-cCCCCccCCCCHHHHHHHHHHHHHhhcCCCCc
Confidence 4589999999999876 57888998999999 999999998 576 678889999999999999999999
Q ss_pred ccchheeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhccccCHHHHHHHHHHcC--CCcCCCCCCCCCCC
Q 007482 412 SGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKG--IRVPGIGHRIKRGD 488 (602)
Q Consensus 412 st~~a~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~--~~ipGfGH~v~~~~ 488 (602)
|| |++|+++||++|+|+||+||++++ ||+||||+++|++||+++.+. +++++||+++++++ ++|||||||+|+.
T Consensus 224 ST-faaRv~aSt~ad~ysav~agi~aL~GplHGGA~e~v~~ml~ei~~~-~~~~~~v~~~~~~~~~~~i~GFGHrvyk~- 300 (412)
T TIGR01798 224 ST-STVRLAGSSGANPFACIAAGIAALWGPAHGGANEAALKMLEEIGSV-KNIPEFIKKVKDKNDPFRLMGFGHRVYKN- 300 (412)
T ss_pred cc-ceeeeeecCCCCHHHHHHHHhhhccCccccchHHHHHHHHHHhCCh-hHHHHHHHHHHhcCCCccccCCCCCCCCC-
Confidence 99 999999999999999999999999 999999999999999999876 68999999999888 4999999999996
Q ss_pred CCcHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHh----ccCCCccchhHHHHHHHHHHhhccCCCChHHHHHHH
Q 007482 489 NRDKRVELLQKFARTHF-----PSVKYMEYAVQVETYTLS----KANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIV 559 (602)
Q Consensus 489 ~~DPRa~~L~~~~~~~~-----~~~~~~~~a~~ie~~~~~----~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~ 559 (602)
.|||+++|+++++++. ..++++++++++|+++.+ .+++++||||||+|+++++||+|.++||+
T Consensus 301 -~DPRa~~L~~~a~~l~~~~g~~~~~~~~~a~~~e~~~~~~~~~~~k~l~pNvD~~sa~l~~~lG~p~~~~t~------- 372 (412)
T TIGR01798 301 -YDPRAKVMRETCHEVLKELGLHDDPLFKLAMELEKIALNDPYFIERKLYPNVDFYSGIILKAMGIPTSMFTV------- 372 (412)
T ss_pred -CCccHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHhhhhhccCCCCcChHHHHHHHHHHcCCChhhhhh-------
Confidence 4899999999988752 247899999999996543 35899999999999999999999999999
Q ss_pred hhcchhhhHHHHhhhhhhhhHHHhhh-----hcCCCCCC
Q 007482 560 EIGYLNGLFVLARSIGLIGHTFDQKR-----LKQPLYRH 593 (602)
Q Consensus 560 p~~~~~~lf~~~R~~G~iAH~~Eq~~-----~~~P~~r~ 593 (602)
+|++||++||+|||+||+. +.||..+|
T Consensus 373 -------lFaisR~~Gw~AH~~Eq~~~~~~~l~RP~~~Y 404 (412)
T TIGR01798 373 -------IFALARTVGWISHWSEMISDPGQKIGRPRQLY 404 (412)
T ss_pred -------HHHHHhhhhHHHHHHHHHhCCCCcccCchhcc
Confidence 9999999999999999975 34777666
No 26
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of ide
Probab=100.00 E-value=2.5e-50 Score=429.31 Aligned_cols=222 Identities=20% Similarity=0.258 Sum_probs=203.5
Q ss_pred CcccCcHHHHHHHhh-hcCCCcccCCCCCcccccCCCcHHHHHHHhhhCC-----CCchhHHHHHHHHHHHhcCCCCCCc
Q 007482 339 GKVRAPTHIISTISD-DRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKR-----SLPRYCTQFIEICIMLCADHGPCVS 412 (602)
Q Consensus 339 ~Li~~~~~i~t~I~~-~~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~-----~~~~~~~~~l~~~Lvl~aDHg~~~s 412 (602)
+|++..+.+++.+++ ..|++++.++.+++ +.+|||+|+ ++. +|+++..++||++||||||||+|+|
T Consensus 133 ~liA~~p~i~A~~yr~~~g~~~~~P~~~ls-------~a~NFL~Ml-~g~~~~~~~p~~~~~~~l~~~LiL~aDHg~n~S 204 (382)
T cd06107 133 RTLAKMPTIAAAAYCHRIGRPFVYPRANLS-------YIENFLYMM-GYVDQEPYEPNPRLARALDRLWILHADHEMNCS 204 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCCC-------HHHHHHHHh-cCCCcCCCCCCHHHHHHHHHHHHHhcccCCcch
Confidence 478889999998766 57999999999999 999999998 554 3788899999999999999999999
Q ss_pred cchheeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhccccCHHHHHHHHHHcCCCcCCCCCCCCCCCCCc
Q 007482 413 GAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRD 491 (602)
Q Consensus 413 t~~a~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGfGH~v~~~~~~D 491 (602)
| |++|+++||++|+|+|++||++++ ||+||||++.|++||+++.+. ++++++|++.+++|++|||||||+|+. .|
T Consensus 205 T-~aaRv~aSt~ad~~s~v~aai~al~GplHGGA~e~v~~~l~ei~~~-~~~~~~v~~~~~~~~ri~GFGHrvyk~--~D 280 (382)
T cd06107 205 T-SAARHTGSSLADPISCMAAAIAALYGPLHGGANEAALKMLREIGTP-ENVPAFIERVKNGKRRLMGFGHRVYKN--YD 280 (382)
T ss_pred h-HHHHHHHhcCCcHHHHHHHHHhhccCCcccchHHHHHHHHHHhCCh-HHHHHHHHHHHhcCCCcCCCCCCCCCC--CC
Confidence 9 899999999999999999999998 999999999999999999876 689999999999999999999999986 48
Q ss_pred HHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHh----ccCCCccchhHHHHHHHHHHhhccCCCChHHHHHHHhhcch
Q 007482 492 KRVELLQKFARTHF---PSVKYMEYAVQVETYTLS----KANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYL 564 (602)
Q Consensus 492 PRa~~L~~~~~~~~---~~~~~~~~a~~ie~~~~~----~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~ 564 (602)
||+++|+++++++. ..++++++++++|+++.+ ++++++||||||+|+++++||+|.++||+
T Consensus 281 PRa~~L~~~~~~l~~~~~~~~~~~~a~~ie~~~~~~~~~~~k~l~pNvD~~sa~~~~~lG~p~~~~t~------------ 348 (382)
T cd06107 281 PRAKVIREILHEVLTEVEKDPLLKVAMELERIALEDEYFVSRKLYPNVDFYSGFIYKALGFPPEFFTV------------ 348 (382)
T ss_pred ccHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhhhccCCCCcChHHHHHHHHHHcCCChhhhhH------------
Confidence 99999999999885 358999999999997543 26999999999999999999999999999
Q ss_pred hhhHHHHhhhhhhhhHHHhhhh
Q 007482 565 NGLFVLARSIGLIGHTFDQKRL 586 (602)
Q Consensus 565 ~~lf~~~R~~G~iAH~~Eq~~~ 586 (602)
+|++||++||+|||+||+..
T Consensus 349 --lf~~sR~~Gw~AH~~Eq~~~ 368 (382)
T cd06107 349 --LFAVARTSGWMAHWREMMED 368 (382)
T ss_pred --HHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999744
No 27
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. DsCS, compared with CS from the hyperthermophile Pyrococcus furiosus (not included in this group), has an increase in the size of surface loops, a higher proline content in the loop regions, a more accessible active site, and a highe
Probab=100.00 E-value=1.1e-49 Score=422.80 Aligned_cols=228 Identities=19% Similarity=0.283 Sum_probs=203.8
Q ss_pred CcccCcHHHHHHHhh-hcCCCcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchhe
Q 007482 339 GKVRAPTHIISTISD-DRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNT 417 (602)
Q Consensus 339 ~Li~~~~~i~t~I~~-~~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~ 417 (602)
++++..+.++.++++ ..+.+++.++.+++ +.+||++|+ +|++|+++++++||++|||+||||+|+|| |++
T Consensus 119 ~lia~~~~i~a~~~~~~~g~~~~~p~~~ls-------~a~nfl~m~-~g~~p~~~~~~~l~~~Lvl~ADHg~n~St-~aa 189 (362)
T cd06111 119 RLLAQLPTVVAADIRRRKGLDPIPPDSDLG-------IAENFLHMC-FGEVPSPEVVRAFDVSLILYAEHSFNAST-FTA 189 (362)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcCCCCCcC-------HHHHHHHHh-hCCCCCHHHHHHHHHHHHHHhccCCchhH-HHH
Confidence 478888888877665 56888887888888 888899888 58888999999999999999999999999 899
Q ss_pred eeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhccccCHHHHHHHHHHcCCCcCCCCCCCCCCCCCcHHHHH
Q 007482 418 IVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVEL 496 (602)
Q Consensus 418 r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGfGH~v~~~~~~DPRa~~ 496 (602)
|+++||++|+|+||+||++++ ||+||||++.|++||+++.+. ++++++|++++++|++|||||||+||. .|||++.
T Consensus 190 R~~aSt~ad~~~av~agl~aL~GplHGGA~~~~~~~l~ei~~~-~~~~~~v~~~~~~~~~l~GFGH~vyk~--~DPRa~~ 266 (362)
T cd06111 190 RVITSTLSDIYSAITGAIGALKGPLHGGANEAVMHMMLEIDDP-EKAAQWMLDALARKEKVMGFGHRVYKS--GDSRVPT 266 (362)
T ss_pred HHHHccCCCHHHHHHHHHhhccCccccchHHHHHHHHHHhCCh-hhHHHHHHHHHhcCCceecCCCCCCCC--CCchHHH
Confidence 999999999999999999998 999999999999999999876 589999999999999999999999986 4899999
Q ss_pred HHHHHHHhC---CCChHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHhhccCCCChHHHHHHHhhcchhhhHHHHhh
Q 007482 497 LQKFARTHF---PSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARS 573 (602)
Q Consensus 497 L~~~~~~~~---~~~~~~~~a~~ie~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~R~ 573 (602)
|+++++++. ..++++++++++++++.+ .++++||||||+|+++++||+|.++||+ +|+++|+
T Consensus 267 L~~~l~~l~~~~~~~~~~~~~~~i~~~~~~-~~~l~pNvD~~~a~l~~~lG~p~~~~~~--------------lf~~~R~ 331 (362)
T cd06111 267 MEKALRRVAAVHDGQKWLAMYDALEDAMVA-AKGIKPNLDFPAGPAYYLMGFDIDFFTP--------------IFVMARI 331 (362)
T ss_pred HHHHHHHHHhhcCccHHHHHHHHHHHHHHH-hcCCCCChHHHHHHHHHHcCcChhhhhh--------------HHHHHHH
Confidence 999888763 356899999999998865 5789999999999999999999999888 9999999
Q ss_pred hhhhhhHHHhhhh---cCCCCCC
Q 007482 574 IGLIGHTFDQKRL---KQPLYRH 593 (602)
Q Consensus 574 ~G~iAH~~Eq~~~---~~P~~r~ 593 (602)
+||+|||+||++. .||..+|
T Consensus 332 ~Gw~AH~~Eq~~~~~l~Rp~~~Y 354 (362)
T cd06111 332 TGWTAHIMEQRADNALIRPLSEY 354 (362)
T ss_pred HHHHHHHHHHHHcCCcccCCcee
Confidence 9999999999843 3555544
No 28
>PRK05614 gltA type II citrate synthase; Reviewed
Probab=100.00 E-value=9e-50 Score=429.23 Aligned_cols=230 Identities=20% Similarity=0.326 Sum_probs=204.6
Q ss_pred cCcccCcHHHHHHHhh-hcCCCcccCCCCCcccccCCCcHHHHHHHhhhCC-----CCchhHHHHHHHHHHHhcCCCCCC
Q 007482 338 SGKVRAPTHIISTISD-DRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKR-----SLPRYCTQFIEICIMLCADHGPCV 411 (602)
Q Consensus 338 ~~Li~~~~~i~t~I~~-~~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~-----~~~~~~~~~l~~~Lvl~aDHg~~~ 411 (602)
.+|++..+.+++.+++ ..|+++++++.+++ +.+||++|+ ++. ++++...++||++||||||||+|+
T Consensus 165 ~rlia~~p~i~A~~~r~~~g~~~~~p~~~ls-------~a~nfl~ml-~g~~~~~~~~~~~~~~~ld~~LiL~ADH~~n~ 236 (419)
T PRK05614 165 IRLIAKMPTLAAMAYKYSIGQPFVYPRNDLS-------YAENFLRMM-FATPCEEYEVNPVLVRALDRIFILHADHEQNA 236 (419)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCccC-------HHHHHHHHH-hCCCCccCCCCHHHHHHHHHHHhhhccCCCCc
Confidence 3478889989888765 67999999999999 999999998 565 567788999999999999999999
Q ss_pred ccchheeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhccccCHHHHHHHHHH--cCCCcCCCCCCCCCCC
Q 007482 412 SGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKK--KGIRVPGIGHRIKRGD 488 (602)
Q Consensus 412 st~~a~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~~~~~~~~~v~~~~~--~~~~ipGfGH~v~~~~ 488 (602)
|| |++|+++||++|+|+|++||++++ ||+||||++.|++||+++.+. ++++++|++.++ +|++|||||||+||.
T Consensus 237 ST-fa~RvvaSt~adlysav~agi~aL~GplHGGA~e~v~~~l~~i~~~-~~~~~~i~~~~~~~~~~~i~GFGHrvyk~- 313 (419)
T PRK05614 237 ST-STVRLAGSSGANPFACIAAGIAALWGPAHGGANEAVLKMLEEIGSV-DNIPEFIARAKDKNDGFRLMGFGHRVYKN- 313 (419)
T ss_pred ch-HHHhhhhccCCCHHHHHHHHHhhcCCCcccChHHHHHHHHHHhCCc-hhHHHHHHHHHhccCCccccCCCCCCCCC-
Confidence 99 999999999999999999999999 999999999999999999776 689999999976 456999999999996
Q ss_pred CCcHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHHh----ccCCCccchhHHHHHHHHHHhhccCCCChHHHHHHHh
Q 007482 489 NRDKRVELLQKFARTH----FPSVKYMEYAVQVETYTLS----KANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVE 560 (602)
Q Consensus 489 ~~DPRa~~L~~~~~~~----~~~~~~~~~a~~ie~~~~~----~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p 560 (602)
.|||+++|+++++++ ...++++++++++|+++.+ ++++++||||||+|+++++||+|.++||+
T Consensus 314 -~DPRa~~l~~~a~~l~~~~~~~~~~~~ia~~ie~~~~~~~~~~~r~l~pNvD~~s~~l~~~lG~p~~~~t~-------- 384 (419)
T PRK05614 314 -YDPRAKIMRETCHEVLKELGLNDPLLEVAMELEEIALNDEYFIERKLYPNVDFYSGIILKALGIPTSMFTV-------- 384 (419)
T ss_pred -CCCCHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhhhhccCCCCcChHHHHHHHHHHcCcChhhhcc--------
Confidence 489999999999865 3368899999999997543 25999999999999999999999999999
Q ss_pred hcchhhhHHHHhhhhhhhhHHHhhh-----hcCCCCCC
Q 007482 561 IGYLNGLFVLARSIGLIGHTFDQKR-----LKQPLYRH 593 (602)
Q Consensus 561 ~~~~~~lf~~~R~~G~iAH~~Eq~~-----~~~P~~r~ 593 (602)
+|++||++||+|||+||++ +.||..+|
T Consensus 385 ------lFa~~R~~Gw~AH~~Eq~~~~~~~iiRPr~~Y 416 (419)
T PRK05614 385 ------IFALARTVGWIAHWNEMHSDPEQKIGRPRQLY 416 (419)
T ss_pred ------hHHhHhHHHHHHHHHHHHhccCCcccCCCccc
Confidence 9999999999999999974 34676655
No 29
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=100.00 E-value=8e-50 Score=425.47 Aligned_cols=229 Identities=22% Similarity=0.343 Sum_probs=208.4
Q ss_pred CcccCcHHHHHHHhh-hcCCCcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchhe
Q 007482 339 GKVRAPTHIISTISD-DRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNT 417 (602)
Q Consensus 339 ~Li~~~~~i~t~I~~-~~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~ 417 (602)
+|++..+.+++.+.+ .+|.+++.++.+++ +.+||++|+ ++++|++.++++||++||++||||+|+|| |++
T Consensus 123 ~liA~~p~i~a~~~r~~~g~~~~~p~~~ls-------~~~nfl~ml-~g~~p~~~~~~~l~~~Lil~aDHg~n~ST-faa 193 (373)
T cd06112 123 KLIAKMPTLVAMWARIRNGDDPIEPRPDLD-------YAENFLYML-FGEEPDPATAKILDACLILHAEHTMNAST-FSA 193 (373)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCcCCCCCCC-------HHHHHHHHH-hCCCCCHHHHHHHHHHHhhcccCCCCchH-HHH
Confidence 478888888888776 47888888888888 888888887 78889999999999999999999999999 999
Q ss_pred eeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhccccCHHHHHHHHHHcCCCcCCCCCCCCCCCCCcHHHHH
Q 007482 418 IVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVEL 496 (602)
Q Consensus 418 r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGfGH~v~~~~~~DPRa~~ 496 (602)
|+++||++|+|+|++||++++ ||+||||++.|++||+++.+. ++++++|++.+++|++|||||||+||. .|||+++
T Consensus 194 RvvaSt~ad~~s~~~aai~al~GplHGGA~e~~~~~l~~i~~~-~~~~~~v~~~l~~~~~i~GfGH~vyk~--~DPRa~~ 270 (373)
T cd06112 194 LVTGSTLADPYAVISSAIGTLSGPLHGGANEDVLEMLEEIGSP-ENVKAYLDKKLANKQKIWGFGHRVYKT--KDPRATI 270 (373)
T ss_pred HHHHhcCCcHHHHHHHHHHhccCccccchHHHHHHHHHHhCCH-HHHHHHHHHHHhcCCeeeCCCCccCCC--CCcHHHH
Confidence 999999999999999999998 999999999999999999876 689999999999999999999999986 4899999
Q ss_pred HHHHHHHhCC----CChHHHHHHHHHHHHHhc--cCCCccchhHHHHHHHHHHhhccCCCChHHHHHHHhhcchhhhHHH
Q 007482 497 LQKFARTHFP----SVKYMEYAVQVETYTLSK--ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVL 570 (602)
Q Consensus 497 L~~~~~~~~~----~~~~~~~a~~ie~~~~~~--~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~ 570 (602)
|+++++++.. .++++++++++|+++.+. +++++||||||+|+++++||+|.++||+ +|++
T Consensus 271 L~~~~~~l~~~~~~~~~~~~i~~~~e~~~~~~~~~k~l~pNvd~~s~~l~~~lG~p~~~~t~--------------lF~i 336 (373)
T cd06112 271 LQKLAEDLFAKMGELSKLYEIALEVERLCEELLGHKGVYPNVDFYSGIVYKELGIPADLFTP--------------IFAV 336 (373)
T ss_pred HHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHhCcCCCCcChHHHHHHHHHHhCcChHhhch--------------HHHH
Confidence 9999998852 478999999999987653 5899999999999999999999999988 9999
Q ss_pred HhhhhhhhhHHHhh---hhcCCCCCC
Q 007482 571 ARSIGLIGHTFDQK---RLKQPLYRH 593 (602)
Q Consensus 571 ~R~~G~iAH~~Eq~---~~~~P~~r~ 593 (602)
||++||+||++||+ ++.||..+|
T Consensus 337 sR~~Gw~AH~~Eq~~~~~l~RP~~~Y 362 (373)
T cd06112 337 ARVAGWLAHWKEQLGDNRIFRPTQIY 362 (373)
T ss_pred HhHHHHHHHHHHHHhccCccCCCcee
Confidence 99999999999997 345777777
No 30
>PRK14037 citrate synthase; Provisional
Probab=100.00 E-value=1.4e-49 Score=423.45 Aligned_cols=234 Identities=23% Similarity=0.328 Sum_probs=206.8
Q ss_pred hHHHhhcCcccCcHHHHHHHhh-hcCCCcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCC
Q 007482 332 LNTAIKSGKVRAPTHIISTISD-DRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPC 410 (602)
Q Consensus 332 ~~~a~~~~Li~~~~~i~t~I~~-~~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~ 410 (602)
.+.+.+ |++..+.+++.+++ .+|.+++.++.+++ +.+||++|+ +|++|+++++++||++||++||||+|
T Consensus 117 ~~~a~~--liA~~p~i~a~~yr~~~g~~~~~p~~~~s-------~a~nfl~ml-~G~~p~~~~~~~l~~~Lil~ADHg~n 186 (377)
T PRK14037 117 KEKAIS--IIAKMATIVANVYRRKEGNKPRIPEPSDS-------FAESFLLAS-FAREPTAEEIKAMDAALILYTDHEVP 186 (377)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHcCCCCCCCCCCCC-------HHHHHHHHH-hccCCcHHHHHHHHHHHhHhcccCCc
Confidence 444544 78888888888776 57888888888888 888999888 79999999999999999999999999
Q ss_pred CccchheeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhccccCHHHHHHHHHH-cCCCcCCCCCCCCCCC
Q 007482 411 VSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKK-KGIRVPGIGHRIKRGD 488 (602)
Q Consensus 411 ~st~~a~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~~~~~~~~~v~~~~~-~~~~ipGfGH~v~~~~ 488 (602)
+|| |++|+++||++|+|+|++||++++ ||+||||++.|++||+++.+. +++++|+++.+. ++++|||||||+|+.
T Consensus 187 aST-~aarv~aSt~ad~ysav~agi~al~GplHGGA~e~v~~~l~ei~~~-~~~~~~~~~~~~~~~~~i~GFGHrvyk~- 263 (377)
T PRK14037 187 AST-TAALVAASTLSDMYSCITAALAALKGPLHGGAAEEAFKQFVEIGDP-NNVEMWFNDKIINGKKRLMGFGHRVYKT- 263 (377)
T ss_pred hHh-HHHHHhhccCCCHHHHHHHHHHhccCcccCChHHHHHHHHHHhcCh-hhHHHHHHHHHhcCCCeecCCCCCCCCC-
Confidence 999 999999999999999999999999 999999999999999999876 688999987654 458999999999986
Q ss_pred CCcHHHHHHHHHHHHhC---C-CChHHHHHHHHHHHHHh--ccCCCccchhHHHHHHHHHHhhccCCCChHHHHHHHhhc
Q 007482 489 NRDKRVELLQKFARTHF---P-SVKYMEYAVQVETYTLS--KANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIG 562 (602)
Q Consensus 489 ~~DPRa~~L~~~~~~~~---~-~~~~~~~a~~ie~~~~~--~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~ 562 (602)
.|||+++|+++++++. . .++++++++++|+++.+ .+++++||||||+|+++++||+|.++||+
T Consensus 264 -~DPRa~~L~~~~~~~~~~~~~~~~~~~ia~~~e~~~~~~~~~k~l~pNvD~~sa~l~~~lG~p~~~~t~---------- 332 (377)
T PRK14037 264 -YDPRAKIFKELAETLIERNSEAKKYFEIAQKLEELGIKQFGSKGIYPNTDFYSGIVFYALGFPVYMFTA---------- 332 (377)
T ss_pred -CCccHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHcCCChhhcch----------
Confidence 4999999999999873 2 47899999999998654 25899999999999999999999999999
Q ss_pred chhhhHHHHhhhhhhhhHHHhhh----hcCCCCCC
Q 007482 563 YLNGLFVLARSIGLIGHTFDQKR----LKQPLYRH 593 (602)
Q Consensus 563 ~~~~lf~~~R~~G~iAH~~Eq~~----~~~P~~r~ 593 (602)
+|++||++||+||++||+. +.||..+|
T Consensus 333 ----lf~isR~~Gw~AH~~Eq~~~~~~~~RP~~~Y 363 (377)
T PRK14037 333 ----LFALSRTLGWLAHIIEYVEEQHRLIRPRALY 363 (377)
T ss_pred ----hHHhhhhhHHHHHHHHHHhcCCccccCccee
Confidence 9999999999999999974 34666555
No 31
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) from citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. Some CS proteins function as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. CCL cleaves citryl-CoA (CiCoA) to AcCoA and OAA. ACLs catalyze an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA; they do this in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. The overall CS reaction is thought to proceed through three partial reactions and i
Probab=100.00 E-value=1.3e-49 Score=394.44 Aligned_cols=195 Identities=22% Similarity=0.326 Sum_probs=177.6
Q ss_pred cHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchheeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHH
Q 007482 375 GVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYF 453 (602)
Q Consensus 375 ~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l 453 (602)
+.+||++|+ ++++|+++++++||++||+++|||+|+|| |++|+++||++|+|+|++|||+++ ||+||||++.+++||
T Consensus 2 ~~~~fl~ml-~g~~p~~~~~~~l~~~lvl~aDHg~~~St-~aar~~aSt~ad~~~av~Agl~al~Gp~hGGa~~~a~~~l 79 (213)
T cd06099 2 YAENFLYML-GGEEPDPEFARAMDLALILHADHEGNAST-FTARVVGSTGSDPYSAIAAAIGALKGPLHGGANEAVLKML 79 (213)
T ss_pred HHHHHHHHh-cCCCCCHHHHHHHHHHHHHhcCCCCchhh-HHHHHHhccCCCHHHHHHHHHHHcCCCCcCCHHHHHHHHH
Confidence 456777666 78889999999999999999999999998 999999999999999999999999 999999999999999
Q ss_pred HHHhccc-cCHHHHHHHHHHcCCCcCCCCCCCCCCCCCcHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHhc--cCC
Q 007482 454 KDAYDRG-LSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPS---VKYMEYAVQVETYTLSK--ANN 527 (602)
Q Consensus 454 ~~~~~~~-~~~~~~v~~~~~~~~~ipGfGH~v~~~~~~DPRa~~L~~~~~~~~~~---~~~~~~a~~ie~~~~~~--~~~ 527 (602)
+++.+.. ++++++|++.++++++|||||||+|+. +|||++.|+++++++... .+++++++++|+++.+. .|+
T Consensus 80 ~e~~~~~~~~~~~~v~~~~~~~~~ipGFGH~vy~~--~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~le~~~~~~~~~r~ 157 (213)
T cd06099 80 EEIGTPKNEPAEAYIRKKLESKRVIMGFGHRVYKK--YDPRATVLKKFAEELLKEDGDDPMFELAAELEKIAEEVLYEKK 157 (213)
T ss_pred HHhCCcccccHHHHHHHHHhCCCcccCCCCCCCCC--CCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhccC
Confidence 9997652 478999999999999999999999985 599999999999998544 49999999999987653 479
Q ss_pred CccchhHHHHHHHHHHhhccCCCChHHHHHHHhhcchhhhHHHHhhhhhhhhHHHhhhhc
Q 007482 528 LVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLK 587 (602)
Q Consensus 528 l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~ 587 (602)
++|||||++|+++++||+|+++||+ +|+++|++||+||++||++..
T Consensus 158 l~~Nvd~~~a~l~~~lG~p~~~~~~--------------lf~~~R~~Gw~AH~~Eq~~~~ 203 (213)
T cd06099 158 LYPNVDFYSGVLYKAMGFPTELFTP--------------LFAVARAVGWLAHLIEQLEDN 203 (213)
T ss_pred CCCChHHHHHHHHHHcCcCHHhhhH--------------HHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999998888877 999999999999999998555
No 32
>PLN02456 citrate synthase
Probab=100.00 E-value=1.1e-49 Score=431.46 Aligned_cols=229 Identities=21% Similarity=0.289 Sum_probs=207.5
Q ss_pred CcccCcHHHHHHHhh-hcCCCcccCCCCCcccccCCCcHHHHHHHhhhC-----CCCchhHHHHHHHHHHHhcCCCCCCc
Q 007482 339 GKVRAPTHIISTISD-DRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFK-----RSLPRYCTQFIEICIMLCADHGPCVS 412 (602)
Q Consensus 339 ~Li~~~~~i~t~I~~-~~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~-----~~~~~~~~~~l~~~Lvl~aDHg~~~s 412 (602)
+|++..+.++..+++ ..|.++++++.+++ +.+||++|+ .+ .++++..+++||++||||||||+|+|
T Consensus 192 rliAk~p~iaA~~yr~~~g~~~~~P~~~ls-------~a~Nfl~Ml-~~~~~~~~~p~~~~~~~l~~~LiLhADHe~n~S 263 (455)
T PLN02456 192 RLIGKLPTLAAAIYRRMYGRGPVIPDNSLD-------YAENFLYML-GSLGDRSYKPDPRLARLLDLYFIIHADHEGGCS 263 (455)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCCCC-------HHHHHHHHh-cCCCCcCCCCCHHHHHHHHHHHeeeccCCCCch
Confidence 478889999888876 47888888999999 999999998 45 35788899999999999999999999
Q ss_pred cchheeeee-cCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhccccCHHHHHHHHHHcCCCcCCCCCCCCCCCCC
Q 007482 413 GAHNTIVTA-RAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNR 490 (602)
Q Consensus 413 t~~a~r~~a-st~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGfGH~v~~~~~~ 490 (602)
| |++|+++ ||++|+|+|++||++++ ||+||||++.|++||+++.+. ++++++|++.+++|++|||||||+||. .
T Consensus 264 T-~aar~~a~St~ad~ysavaAgi~aL~GPlHGGA~e~v~~~l~ei~~~-~~v~~~v~~~l~~~~~l~GFGHrvyk~--~ 339 (455)
T PLN02456 264 T-AAARHLVGSSGVDPYTSVAAGVNALAGPLHGGANEAVLKMLKEIGTV-ENIPEYVEGVKNSKKVLPGFGHRVYKN--Y 339 (455)
T ss_pred h-HHHHHHHhccCCCHHHHHHHHhhhcCCCcccChHHHHHHHHHHhCCH-HHHHHHHHHHHhCCCcccCCCCCCCCC--C
Confidence 9 8999887 99999999999999998 999999999999999999766 689999999999999999999999985 5
Q ss_pred cHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHh----ccCCCccchhHHHHHHHHHHhhccCCCChHHHHHHHhhcc
Q 007482 491 DKRVELLQKFARTH---FPSVKYMEYAVQVETYTLS----KANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGY 563 (602)
Q Consensus 491 DPRa~~L~~~~~~~---~~~~~~~~~a~~ie~~~~~----~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~ 563 (602)
|||+++|+++++++ ...++++++++++|+++.. +.++++||||||+|++++.||+|.++||+
T Consensus 340 DPRa~~L~~~a~~l~~~~~~~~~~~ia~~le~~~~~~~~~~~r~l~pNVDfysg~l~~~lGip~~~~t~----------- 408 (455)
T PLN02456 340 DPRAKCIREFALEVFKHVGDDPLFKVASALEEVALLDEYFKVRKLYPNVDFYSGVLLRALGFPEEFFTV----------- 408 (455)
T ss_pred CCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHcCcChhhccc-----------
Confidence 89999999999976 4678999999999997522 46899999999999999999999999999
Q ss_pred hhhhHHHHhhhhhhhhHHHhh-----hhcCCCCCC
Q 007482 564 LNGLFVLARSIGLIGHTFDQK-----RLKQPLYRH 593 (602)
Q Consensus 564 ~~~lf~~~R~~G~iAH~~Eq~-----~~~~P~~r~ 593 (602)
+|+++|++||+|||+||+ ++.||...|
T Consensus 409 ---lFaisR~~Gw~AH~~E~~~~~~~ri~RP~~~Y 440 (455)
T PLN02456 409 ---LFAVSRAAGYLSQWDEALGLPDERIMRPKQVY 440 (455)
T ss_pred ---hhhhhhHHHHHHHHHHHHhCCcccccCCCccc
Confidence 999999999999999997 345788876
No 33
>PRK14033 citrate synthase; Provisional
Probab=100.00 E-value=2.6e-49 Score=421.38 Aligned_cols=229 Identities=19% Similarity=0.279 Sum_probs=205.1
Q ss_pred cCcccCcHHHHHHHhh-hcCCCcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchh
Q 007482 338 SGKVRAPTHIISTISD-DRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHN 416 (602)
Q Consensus 338 ~~Li~~~~~i~t~I~~-~~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a 416 (602)
.++++..+.++..+++ ..+.+++.++.+++ ...||++|+ +|++|++.++++||++||++||||+|+|| |+
T Consensus 128 ~~lia~~~~i~a~~~~~~~g~~~~~p~~~~s-------~a~nfl~ml-~g~~p~~~~~~~l~~~Lvl~ADHgln~St-fa 198 (375)
T PRK14033 128 LRLFAVLPTIVAADQRRRRGLDPIAPRSDLG-------YAENFLHMC-FGEVPEPEVVRAFEVSLILYAEHSFNAST-FT 198 (375)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccCCCCCCC-------HHHHHHHHH-hCCCCCHHHHHHHHHHHHHHhccCCCcHH-HH
Confidence 3478888888877655 57888888888888 888888887 58888999999999999999999999999 89
Q ss_pred eeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhccccCHHHHHHHHHHcCCCcCCCCCCCCCCCCCcHHHH
Q 007482 417 TIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVE 495 (602)
Q Consensus 417 ~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGfGH~v~~~~~~DPRa~ 495 (602)
+|+++||++|+|+||+|||+++ ||+||||++.|++||+++.+. ++++++|++.+++|++|||||||+|+. .|||++
T Consensus 199 aRv~aSt~adl~~av~agl~al~GplHGGA~e~~~~~l~ei~~~-~~~~~~v~~~~~~~~~l~GFGH~vyk~--~DPRa~ 275 (375)
T PRK14033 199 ARVITSTLSDIYSAVTGAIGALKGPLHGGANEAVMHTMLEIGDP-ARAAEWLRDALARKEKVMGFGHRVYKH--GDSRVP 275 (375)
T ss_pred HHHHhccCCCHHHHHHHHHhhccCccccChHHHHHHHHHHhCCh-hHHHHHHHHHHhCCCceecCCCCCCCC--CCchHH
Confidence 9999999999999999999998 999999999999999999876 589999999999999999999999986 489999
Q ss_pred HHHHHHHHhC---CCChHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHhhccCCCChHHHHHHHhhcchhhhHHHHh
Q 007482 496 LLQKFARTHF---PSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLAR 572 (602)
Q Consensus 496 ~L~~~~~~~~---~~~~~~~~a~~ie~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~R 572 (602)
+|++.++++. ..++++++++++|+++.+ .++++||||||+|+++++||+|.++||+ +|+++|
T Consensus 276 ~L~~~l~~l~~~~~~~~~~~~~~~i~~~~~~-~~gl~pNvD~~~a~l~~~lGip~~~~~~--------------lf~~~R 340 (375)
T PRK14033 276 TMKAALRRVAAVRDGQRWLDIYEALEKAMAE-ATGIKPNLDFPAGPAYYLMGFDIDFFTP--------------IFVMSR 340 (375)
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHcCcCchhhhH--------------HHHHHH
Confidence 9999888773 457899999999998865 5889999999999999999999999888 999999
Q ss_pred hhhhhhhHHHhhhh---cCCCCCC
Q 007482 573 SIGLIGHTFDQKRL---KQPLYRH 593 (602)
Q Consensus 573 ~~G~iAH~~Eq~~~---~~P~~r~ 593 (602)
++||+|||+||++. .||..+|
T Consensus 341 ~~Gw~AH~~Eq~~~~~l~RP~~~Y 364 (375)
T PRK14033 341 ITGWTAHIMEQRASNALIRPLSEY 364 (375)
T ss_pred HHHHHHHHHHHHhcCCccccCcee
Confidence 99999999999743 4666655
No 34
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like. 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxaloacetate (OAA) to form 2-methylcitrate and CoA. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with OAA to form citrate and CoA, the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the a
Probab=100.00 E-value=2.5e-49 Score=425.26 Aligned_cols=231 Identities=23% Similarity=0.266 Sum_probs=204.0
Q ss_pred CcccCcHHHHHHHhhh-cCC--CcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCC-CCCccc
Q 007482 339 GKVRAPTHIISTISDD-RGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHG-PCVSGA 414 (602)
Q Consensus 339 ~Li~~~~~i~t~I~~~-~g~--~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg-~~~st~ 414 (602)
+|++..|.++..++++ .|+ ++.+++.+++ +.+|||+|+ +..|++...++||.+|||||||| +|+||
T Consensus 172 rLiAk~ptI~A~~yr~~~g~~~~~~~p~~~ls-------~a~NFL~Ml--g~~p~~~~~~~l~~~LiL~ADHeg~NaST- 241 (428)
T cd06106 172 NLIARLPALAARIYRNVYGEGHGLGKIDPEVD-------WSYNFTSML--GYGDNLDFVDLLRLYIALHGDHEGGNVSA- 241 (428)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcC-------HHHHHHHHh--CCCCChHHHHHHHHHHhhhcccCCccchH-
Confidence 4799999999988774 444 5666899999 999999998 66788889999999999999999 89999
Q ss_pred hheeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHH----hc--cccCHHHHHHHHHHcCCCcCCCCCCCCCC
Q 007482 415 HNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDA----YD--RGLSAYEFVESMKKKGIRVPGIGHRIKRG 487 (602)
Q Consensus 415 ~a~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~----~~--~~~~~~~~v~~~~~~~~~ipGfGH~v~~~ 487 (602)
|++|+++||++|+|+|++||++++ ||+||||++.|++||+++ ++ ..+++++||++.+++|++|||||||+|+.
T Consensus 242 faarvvaST~ad~ysav~agi~aL~GPlHGGAne~v~~~l~e~~~~ig~~~~~~~~~~~i~~~l~~g~~i~GfGHrvYk~ 321 (428)
T cd06106 242 HTTHLVGSALSDPYLSYSAGLMGLAGPLHGLAAQEVLRWILEMQKNIGSKATDQDIRDYLWKTLKSGRVVPGYGHAVLRK 321 (428)
T ss_pred HHHHHHhccCCCHHHHHHHHHHhcCCCcccChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcccCCCCCCCCC
Confidence 999999999999999999999999 999999999999988776 32 12588999999999999999999999996
Q ss_pred CCCcHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHh------ccCCCccchhHHHHHHHHHHhhcc-CCCChHHHHHH
Q 007482 488 DNRDKRVELLQKFARTHF--PSVKYMEYAVQVETYTLS------KANNLVLNVDGAIGSLFLDLLAGS-GMFSKQEIDEI 558 (602)
Q Consensus 488 ~~~DPRa~~L~~~~~~~~--~~~~~~~~a~~ie~~~~~------~~~~l~~Nvd~~~a~l~~~lG~~~-~~ft~~e~~~~ 558 (602)
.|||+++|+++++++. ..++++++++++|+++.+ +.++++||||||+|+++..||+|. ++||+
T Consensus 322 --~DPRa~~l~~~~~~l~~~~~~~~~~~a~~ie~~~~~~l~~~~~~~~l~pNVDfysg~v~~~lGip~~~~ft~------ 393 (428)
T cd06106 322 --PDPRFTALMEFAQTRPELENDPVVQLVQKLSEIAPGVLTEHGKTKNPFPNVDAASGVLFYHYGIREFLYYTV------ 393 (428)
T ss_pred --CCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhccccCCCCCchhHHHHHHHHcCCChhhcchH------
Confidence 4899999999999874 346899999999986532 358999999999999999999998 68999
Q ss_pred HhhcchhhhHHHHhhhhhhhhHHHhhhhcCCCCCCCC
Q 007482 559 VEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPW 595 (602)
Q Consensus 559 ~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~~P~~r~~~ 595 (602)
+|++||++||+||++||+...+|+.|...
T Consensus 394 --------lFaisR~~GW~AHi~eq~~~~~~I~RP~s 422 (428)
T cd06106 394 --------IFGVSRALGPLTQLVWDRILGLPIERPKS 422 (428)
T ss_pred --------HHHHHHHHHHHHHHHHHHhCCCCCcCCCc
Confidence 99999999999999999966677777643
No 35
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some typ
Probab=100.00 E-value=3.7e-49 Score=423.09 Aligned_cols=229 Identities=22% Similarity=0.323 Sum_probs=203.9
Q ss_pred CcccCcHHHHHHHhh-hcCCCcccCCCCCcccccCCCcHHHHHHHhhhCC-----CCchhHHHHHHHHHHHhcCCCCCCc
Q 007482 339 GKVRAPTHIISTISD-DRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKR-----SLPRYCTQFIEICIMLCADHGPCVS 412 (602)
Q Consensus 339 ~Li~~~~~i~t~I~~-~~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~-----~~~~~~~~~l~~~Lvl~aDHg~~~s 412 (602)
+|++..+.+++.+++ ..|++++.++.+++ +.+||++|+ +++ +|++...++||++||||||||+|+|
T Consensus 148 ~lia~~p~i~a~~~r~~~g~~~~~p~~~ls-------~a~nfl~ml-~g~~~~~~~p~~~~~~~l~~~LvL~aDH~~n~S 219 (400)
T cd06114 148 RLIAKVPTIAAMAYRYSIGQPFIYPDNDLS-------YVENFLHMM-FAVPYEPYEVDPVVVKALDTILILHADHEQNAS 219 (400)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCCcC-------HHHHHHHHh-cCCCCccCCCCHHHHHHHHHHHeeeccCCCcch
Confidence 478888888888765 57888888888888 999999998 576 6788899999999999999999999
Q ss_pred cchheeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhccccCHHHHHHHHHHcC--CCcCCCCCCCCCCCC
Q 007482 413 GAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKG--IRVPGIGHRIKRGDN 489 (602)
Q Consensus 413 t~~a~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~--~~ipGfGH~v~~~~~ 489 (602)
| |++|+++||++|+|+||+||++++ ||+||||++.|++||+++.+. ++++++|++.++++ ++|||||||+|+.
T Consensus 220 T-faaRv~aSt~adl~sav~agl~al~GplHGGA~~~v~~~l~~i~~~-~~~~~~v~~~l~~~~~~~ipGfGH~vyk~-- 295 (400)
T cd06114 220 T-STVRMVGSSGANLFASISAGIAALWGPLHGGANEAVLEMLEEIGSV-GNVDKYIAKAKDKNDPFRLMGFGHRVYKN-- 295 (400)
T ss_pred H-HHHHHHhccCCcHHHHHHHHHHhccCCcccChHHHHHHHHHHhcCc-ccHHHHHHHHHhcCCCccccCCCCCCCCC--
Confidence 9 999999999999999999999999 999999999999999999877 68999999999987 5999999999996
Q ss_pred CcHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHHh----ccCCCccchhHHHHHHHHHHhhccCCCChHHHHHHHhh
Q 007482 490 RDKRVELLQKFARTH----FPSVKYMEYAVQVETYTLS----KANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEI 561 (602)
Q Consensus 490 ~DPRa~~L~~~~~~~----~~~~~~~~~a~~ie~~~~~----~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~ 561 (602)
.|||+++|+++++++ ...++++++++++|+++.+ ++++++||||||+|+++++||+|.++||+
T Consensus 296 ~DPRa~~L~~~~~~l~~~~~~~~~~~~~~~~ie~~~~~~~~~~~~~l~pNvD~~~a~l~~~lG~p~~~~~~--------- 366 (400)
T cd06114 296 YDPRAKILKKTCDEVLAELGKDDPLLEIAMELEEIALKDDYFIERKLYPNVDFYSGIILRALGIPTEMFTV--------- 366 (400)
T ss_pred CCccHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhcccCCCCChHHHHHHHHHHcCCChHhhhh---------
Confidence 489999999998775 3457899999999996543 25999999999999999999999999888
Q ss_pred cchhhhHHHHhhhhhhhhHHHhhh-----hcCCCCCC
Q 007482 562 GYLNGLFVLARSIGLIGHTFDQKR-----LKQPLYRH 593 (602)
Q Consensus 562 ~~~~~lf~~~R~~G~iAH~~Eq~~-----~~~P~~r~ 593 (602)
+|++||++||+||++||++ +.||..+|
T Consensus 367 -----lFa~sR~~Gw~AH~~Eq~~~~~~~liRP~~~Y 398 (400)
T cd06114 367 -----LFALGRTPGWIAQWREMHEDPELKIGRPRQLY 398 (400)
T ss_pred -----hHHHHhHHHHHHHHHHHHhCCCCceeCccccc
Confidence 9999999999999999975 24565544
No 36
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homo
Probab=100.00 E-value=3.8e-49 Score=424.17 Aligned_cols=230 Identities=20% Similarity=0.260 Sum_probs=205.9
Q ss_pred CcccCcHHHHHHHhhh---cCCCcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCC-CCCccc
Q 007482 339 GKVRAPTHIISTISDD---RGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHG-PCVSGA 414 (602)
Q Consensus 339 ~Li~~~~~i~t~I~~~---~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg-~~~st~ 414 (602)
+|++..+.+++.+.++ .|++++.++.+++ +.+||++|+ . .++ ++.+++||++|||||||| +|+||
T Consensus 173 ~liA~~p~I~A~~yr~~~~~g~~~~~p~~~ls-------~aeNfl~ml-~-~~~-~~~~~~l~~~LiL~ADHe~~NaST- 241 (426)
T cd06103 173 DLIAKLPVVAAKIYRRKYRKGGEIGAIDSKLD-------WSANFAHML-G-YED-EEFTDLMRLYLTLHSDHEGGNVSA- 241 (426)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCccCCCCCcC-------HHHHHHHHh-C-CCC-HHHHHHHHHHHhhhhccCCccchH-
Confidence 4799999999998775 4888899999999 999999998 3 332 678899999999999999 79999
Q ss_pred hheeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhc------cccCHHHHHHHHHHcCCCcCCCCCCCCCC
Q 007482 415 HNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYD------RGLSAYEFVESMKKKGIRVPGIGHRIKRG 487 (602)
Q Consensus 415 ~a~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~------~~~~~~~~v~~~~~~~~~ipGfGH~v~~~ 487 (602)
|++|+++||++|+|+||+||++++ ||+||||++.|++||+++.+ ..++++++|++.+++|++|||||||+|+.
T Consensus 242 faaRvvaSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ei~~~ig~~~~~~~~~~~v~~~l~~~~~i~GfGHrvYk~ 321 (426)
T cd06103 242 HTSHLVGSALSDPYLSFSAALNGLAGPLHGLANQEVLKWLLKMQKELGKDVSDEELEKYIWDTLNSGRVVPGYGHAVLRK 321 (426)
T ss_pred HHHHHHhccCCCHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCcccCCCCCCCCC
Confidence 999999999999999999999999 99999999999999998762 22588999999999999999999999996
Q ss_pred CCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHh------ccCCCccchhHHHHHHHHHHhhc-cCCCChHHHHHHHh
Q 007482 488 DNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLS------KANNLVLNVDGAIGSLFLDLLAG-SGMFSKQEIDEIVE 560 (602)
Q Consensus 488 ~~~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~~------~~~~l~~Nvd~~~a~l~~~lG~~-~~~ft~~e~~~~~p 560 (602)
.|||+++|+++++++...++++++++++|+++.+ +.++++||||||+|++++.||+| .++||+
T Consensus 322 --~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~~~~~~~~~~k~l~pNVDfysa~v~~~lGip~~~~ft~-------- 391 (426)
T cd06103 322 --TDPRFTCQREFALKHLPDDPLFKLVAQCYKIIPGVLKEHGKVKNPYPNVDAHSGVLLQHYGMTEPQYYTV-------- 391 (426)
T ss_pred --CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcccCCCCCChHhHHHHHHHHcCCChhhhhhH--------
Confidence 4899999999999998788999999999987642 35789999999999999999999 489999
Q ss_pred hcchhhhHHHHhhhhhhhhHHHhhhhcCCCCCCCC
Q 007482 561 IGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPW 595 (602)
Q Consensus 561 ~~~~~~lf~~~R~~G~iAH~~Eq~~~~~P~~r~~~ 595 (602)
+|++||++||+||++||+...+++.|...
T Consensus 392 ------lFa~sR~~Gw~AH~~Eq~~~~~~i~RP~s 420 (426)
T cd06103 392 ------LFGVSRALGVLAQLVWSRALGLPIERPKS 420 (426)
T ss_pred ------HHhHhhcchHHHHHHHHHhCCCCCCCCCc
Confidence 99999999999999999977677777643
No 37
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II. Members of this family are dimeric enzymes with activity as 2-methylcitrate synthase, citrate synthase, or both. Many Gram-negative species have a hexameric citrate synthase, termed citrate synthase I (TIGR01798). Members of this family (TIGR01800) appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesize 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme.
Probab=100.00 E-value=5e-49 Score=419.38 Aligned_cols=229 Identities=20% Similarity=0.280 Sum_probs=205.4
Q ss_pred cCcccCcHHHHHHHhh-hcCCCcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchh
Q 007482 338 SGKVRAPTHIISTISD-DRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHN 416 (602)
Q Consensus 338 ~~Li~~~~~i~t~I~~-~~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a 416 (602)
.++++..+.++..+++ ..+.+++.++.+++ +.+||++|+ ++++|+++++++||++|||+||||+|+|| |+
T Consensus 118 ~~lia~~p~i~a~~~~~~~g~~~~~p~~~~~-------~~~n~l~ml-~g~~p~~~~~~~l~~~Lvl~ADHg~n~St-~a 188 (368)
T TIGR01800 118 IRLIAKLPTIVAYWYRIRNGLEIVAPKEDDS-------HAANFLYML-HGEEPSKEEEKAMDIALILYAEHEFNAST-FA 188 (368)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcCCCCCcc-------HHHHHHHHh-cCCCCCHHHHHHHHHHHhHhccCCCchHH-HH
Confidence 3478888888888776 46888888887777 777889888 58888999999999999999999999999 89
Q ss_pred eeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhccccCHHHHHHHHHHcCCCcCCCCCCCCCCCCCcHHHH
Q 007482 417 TIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVE 495 (602)
Q Consensus 417 ~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGfGH~v~~~~~~DPRa~ 495 (602)
+|+++||++|+|+||+|||+++ ||+||||++.|++||+++.+. ++++++|++.+++|++|||||||+|+. .|||++
T Consensus 189 aRv~aSt~adl~~av~agl~al~Gp~HGGA~~~~~~~l~~i~~~-~~~~~~v~~~l~~~~~i~GfGH~vy~~--~DPRa~ 265 (368)
T TIGR01800 189 ARVAASTLSDMYSAITAAIGALKGPLHGGANEAVMAMLDEIGDP-DKAEAWIRKALENKERIMGFGHRVYKT--YDPRAK 265 (368)
T ss_pred HHHHhccCCCHHHHHHHHHhhcCCccccCHHHHHHHHHHHhcCh-HHHHHHHHHHHHCCCccCCCCCCCCCC--CCchHH
Confidence 9999999999999999999998 999999999999999999876 589999999999999999999999985 599999
Q ss_pred HHHHHHHHhC---CCChHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHhhccCCCChHHHHHHHhhcchhhhHHHHh
Q 007482 496 LLQKFARTHF---PSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLAR 572 (602)
Q Consensus 496 ~L~~~~~~~~---~~~~~~~~a~~ie~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~R 572 (602)
.|+++++++. ..++++++++++|+++.+ .++++||||||+|+++++||+|.++||+ +|++||
T Consensus 266 ~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~pNvD~~~a~l~~~lg~p~~~~~~--------------lf~~~R 330 (368)
T TIGR01800 266 ILKEYAKKLSAKEGDSKWYEIAERLEDVMEK-EKGIYPNVDFYSGSVYYSMGIPTDLFTP--------------IFAMSR 330 (368)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH-hcCCCCChHHHHHHHHHHcCcCHHHhhh--------------HHHHHH
Confidence 9999999873 467899999999998865 5789999999999999999999888888 999999
Q ss_pred hhhhhhhHHHhhhh---cCCCCCC
Q 007482 573 SIGLIGHTFDQKRL---KQPLYRH 593 (602)
Q Consensus 573 ~~G~iAH~~Eq~~~---~~P~~r~ 593 (602)
++||+|||+||++. .||..+|
T Consensus 331 ~~Gw~AH~~Eq~~~~~l~Rp~~~Y 354 (368)
T TIGR01800 331 VSGWTAHIIEQVENNRLIRPRADY 354 (368)
T ss_pred HHHHHHHHHHHHhcCCccCccccc
Confidence 99999999999843 4665555
No 38
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-II, the major CS of the gram-positive bacterium Bacillus subtilis. A mutation in the gene which encodes BsCS-II (citZ gene) has been described which resulted in a significant loss of CS activity, partial glutamate auxotrophy, and a sporulation deficiency, a
Probab=100.00 E-value=1.7e-48 Score=414.19 Aligned_cols=228 Identities=20% Similarity=0.280 Sum_probs=204.1
Q ss_pred CcccCcHHHHHHHhh-hcCCCcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchhe
Q 007482 339 GKVRAPTHIISTISD-DRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNT 417 (602)
Q Consensus 339 ~Li~~~~~i~t~I~~-~~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~ 417 (602)
++++..+.+...+.+ ..+.++..++.+++ ...||++|+ ++++|++.++++||++||++||||+|+|| |++
T Consensus 119 ~lla~~p~i~a~~~~~~~~~~~~~p~~~~~-------~a~~~l~~l-~g~~p~~~~~~~l~~~Lvl~aDHg~n~St-fa~ 189 (356)
T cd06110 119 RLIAKMPTIVAAFHRIRNGLEPVAPDPDLS-------HAANFLYML-TGEKPSEEAARAFDVALILHADHELNAST-FAA 189 (356)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCCC-------HHHHHHHHh-cCCCCCHHHHHHHHHHHHHhccCCCchhH-HHH
Confidence 477777777777644 56777888888888 788888887 78889999999999999999999999999 899
Q ss_pred eeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhccccCHHHHHHHHHHcCCCcCCCCCCCCCCCCCcHHHHH
Q 007482 418 IVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVEL 496 (602)
Q Consensus 418 r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGfGH~v~~~~~~DPRa~~ 496 (602)
|+++||++|+|+|++|||+++ ||+||||++.|++||+++.+. ++++++|+++++++++|||||||+|+. .|||+++
T Consensus 190 Rv~aSt~ad~~~av~agl~al~GplHGgA~~~~~~~l~~~~~~-~~~~~~v~~~~~~~~~i~GfGH~vy~~--~DPRa~~ 266 (356)
T cd06110 190 RVVASTLSDMYSAVTAAIGALKGPLHGGANERVMKMLLEIGSV-DNVAAYVKDKLANKEKIMGFGHRVYKT--GDPRAKH 266 (356)
T ss_pred HHHHhcCCCHHHHHHHHHhhcCCCcccCcHHHHHHHHHHhCCH-HHHHHHHHHHHhcCCeecCCCCccCCC--CCChHHH
Confidence 999999999999999999998 999999999999999999765 589999999999999999999999985 4899999
Q ss_pred HHHHHHHhC---CCChHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHhhccCCCChHHHHHHHhhcchhhhHHHHhh
Q 007482 497 LQKFARTHF---PSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARS 573 (602)
Q Consensus 497 L~~~~~~~~---~~~~~~~~a~~ie~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~R~ 573 (602)
|+++++++. +..+++++++++|+++.+ .++++||||+|+|+++++||+|.++||+ +|+++|+
T Consensus 267 L~~~~~~~~~~~~~~~~~~~~~~ie~~~~~-~~~l~pNvd~~~a~l~~~lg~p~~~~~~--------------lf~i~R~ 331 (356)
T cd06110 267 LREMSRRLGKETGEPKWYEMSEAIEQAMRD-EKGLNPNVDFYSASVYYMLGIPVDLFTP--------------IFAISRV 331 (356)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-ccCCCcChHHHHHHHHHHcCcChhhhhH--------------HHHHHHH
Confidence 999999883 467899999999998865 5899999999999999999999888887 9999999
Q ss_pred hhhhhhHHHhhh---hcCCCCCC
Q 007482 574 IGLIGHTFDQKR---LKQPLYRH 593 (602)
Q Consensus 574 ~G~iAH~~Eq~~---~~~P~~r~ 593 (602)
+||+||++||++ +.||..+|
T Consensus 332 ~Gw~AH~~Eq~~~~~iiRP~~~Y 354 (356)
T cd06110 332 SGWCAHILEQYFNNRLIRPRAEY 354 (356)
T ss_pred HHHHHHHHHHHHcCCccCCcccc
Confidence 999999999974 34666655
No 39
>PRK12349 citrate synthase 3; Provisional
Probab=100.00 E-value=5e-49 Score=418.84 Aligned_cols=234 Identities=18% Similarity=0.205 Sum_probs=205.7
Q ss_pred hHHHhhcCcccCcHHHHHHHhh-hcCCCcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCC
Q 007482 332 LNTAIKSGKVRAPTHIISTISD-DRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPC 410 (602)
Q Consensus 332 ~~~a~~~~Li~~~~~i~t~I~~-~~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~ 410 (602)
...+.+ |++..+.++..+++ ..+++++.++.+++ +..||++|+ ++++|++++.++||++|||+||||+|
T Consensus 120 ~~~a~~--lia~~p~i~a~~~r~~~g~~~~~p~~~l~-------~a~nfl~ml-~g~~p~~~~~~~~~~~Lvl~ADH~ln 189 (369)
T PRK12349 120 KSRAYK--LLSKVPNIVANSYHILNNEEPIEPLKELS-------YSANFLYML-TGKKPTELEEKIFDRSLVLYSEHEMP 189 (369)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHhcCCCCCCCCcCCC-------HHHHHHHHH-hCCCCCHHHHHHHHHHHHHHhCcCcc
Confidence 444544 78888888887766 46888888888888 888899888 58889999999999999999999999
Q ss_pred CccchheeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhccccCHHHHHHHHHHcCCCcCCCCCCCCCCCC
Q 007482 411 VSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDN 489 (602)
Q Consensus 411 ~st~~a~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGfGH~v~~~~~ 489 (602)
+|| |++|+++||++|+|+||+|||+++ ||+||||++.|++||+++.+. ++++++|++.+++|++|||||||+|+. +
T Consensus 190 aSt-fa~Rv~aSt~ad~~~av~agl~al~GplHGGA~e~~~~~l~~i~~~-~~~~~~v~~~l~~~~~i~GFGH~vy~~-~ 266 (369)
T PRK12349 190 NST-FTARVIASTQSDLYGALTGAVASLKGSLHGGANEAVMYMLLEAGTV-EKFEELLQKKLYNKEKIMGFGHRVYMK-K 266 (369)
T ss_pred HHH-HHHHHHHccCccHHHHHHHHHHhccCccccChHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCcccCCCCCCCCC-C
Confidence 999 999999999999999999999999 999999999999999999876 689999999999999999999999943 2
Q ss_pred CcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHhhccCCCChHHHHHHHhhcchhh
Q 007482 490 RDKRVELLQKFARTHF---PSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNG 566 (602)
Q Consensus 490 ~DPRa~~L~~~~~~~~---~~~~~~~~a~~ie~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~ 566 (602)
.|||+++|+++++++. ...+++++++++|+++.+ .++++||||||+|+++++||+|.++||+
T Consensus 267 ~DPRa~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~~-~~gl~pNvD~~~a~l~~~lG~p~~~~~~-------------- 331 (369)
T PRK12349 267 MDPRALMMKEALKQLCDVKGDYTLYEMCEAGEKIMEK-EKGLYPNLDYYAAPVYWMLGIPIQLYTP-------------- 331 (369)
T ss_pred CCCcHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH-hcCCCCCcHHHHHHHHHHcCCChhhhhH--------------
Confidence 4899999999988773 334678999999988754 5789999999999999999999888888
Q ss_pred hHHHHhhhhhhhhHHHhhhh---cCCCCCC
Q 007482 567 LFVLARSIGLIGHTFDQKRL---KQPLYRH 593 (602)
Q Consensus 567 lf~~~R~~G~iAH~~Eq~~~---~~P~~r~ 593 (602)
+|+++|++||+||++||++. .||..+|
T Consensus 332 lf~i~R~~Gw~AH~~Eq~~~~~l~RP~~~Y 361 (369)
T PRK12349 332 IFFSSRTVGLCAHVIEQHANNRLFRPRVNY 361 (369)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccccee
Confidence 99999999999999999843 4666555
No 40
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like. Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-neg
Probab=100.00 E-value=8.1e-49 Score=421.27 Aligned_cols=233 Identities=21% Similarity=0.279 Sum_probs=207.2
Q ss_pred HHHhhcCcccCcHHHHHHHhhh--cCCCcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCC-C
Q 007482 333 NTAIKSGKVRAPTHIISTISDD--RGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHG-P 409 (602)
Q Consensus 333 ~~a~~~~Li~~~~~i~t~I~~~--~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg-~ 409 (602)
+++. +|++..|.+++.+.++ .|.+++.++.+++ +.+||++|+ .+. +++..++||.+|||||||| +
T Consensus 168 ~~~~--~LiAk~p~i~A~~yr~~~~g~~~~~pd~~ls-------~a~Nfl~Ml-~~~--~~~~~~~l~~~lvLhADHeg~ 235 (427)
T cd06105 168 EDSM--DLIAKLPCVAAKIYRNLYRGGKIIAIDSNLD-------WSANFANML-GYT--DPQFTELMRLYLTIHSDHEGG 235 (427)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHhCCCCcCCCCCCcC-------HHHHHHHHh-cCC--CHHHHHHHHHHHhhhccccCc
Confidence 3444 4799999999998875 4888999999999 999999998 333 3678999999999999999 8
Q ss_pred CCccchheeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhc------cccCHHHHHHHHHHcCCCcCCCCC
Q 007482 410 CVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYD------RGLSAYEFVESMKKKGIRVPGIGH 482 (602)
Q Consensus 410 ~~st~~a~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~------~~~~~~~~v~~~~~~~~~ipGfGH 482 (602)
|+|| |++|+++||++|+|+|++||++++ ||+||||+++|++||+++.+ ..++++++|++.+++|++||||||
T Consensus 236 NaST-faarvvaSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ei~~~~g~~~~~~~v~~~i~~~l~~g~~i~GFGH 314 (427)
T cd06105 236 NVSA-HTTHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTKLQKEVGKDVSDEQLREYVWKTLNSGRVVPGYGH 314 (427)
T ss_pred cchH-HHHHHHhccCCCHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCcccCCCC
Confidence 9999 999999999999999999999999 99999999999999988753 124678999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHh------ccCCCccchhHHHHHHHHHHhhc-cCCCChHHH
Q 007482 483 RIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLS------KANNLVLNVDGAIGSLFLDLLAG-SGMFSKQEI 555 (602)
Q Consensus 483 ~v~~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~~------~~~~l~~Nvd~~~a~l~~~lG~~-~~~ft~~e~ 555 (602)
|+|+.. |||+++|++++.++...++++++++++|+++.+ +.++++||||||+|+++..||+| .++|||
T Consensus 315 rvyk~~--DPRa~~lk~~~~~~~~~~~~~~~~~~ie~~a~~~l~~~~~~~~l~pNVDfysg~l~~~lGip~~~~ft~--- 389 (427)
T cd06105 315 AVLRKT--DPRYTCQREFALKHLPNDPLFKLVSQLYKIVPPVLTEQGKAKNPWPNVDAHSGVLLQYYGLTEMNYYTV--- 389 (427)
T ss_pred CCCCCC--CCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHcCCCchhhhHH---
Confidence 999964 899999999999988888999999999986532 35899999999999999999999 589999
Q ss_pred HHHHhhcchhhhHHHHhhhhhhhhHHHhhhhcCCCCCCC
Q 007482 556 DEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP 594 (602)
Q Consensus 556 ~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~~P~~r~~ 594 (602)
+|++||++||+||++||+...+|+.|..
T Consensus 390 -----------lFa~sR~~GW~AH~~Eq~~~~~~I~RP~ 417 (427)
T cd06105 390 -----------LFGVSRALGVLSQLIWDRALGLPLERPK 417 (427)
T ss_pred -----------HHHHHHHHHHHHHHHHHHhCCCCccCCc
Confidence 9999999999999999996666777764
No 41
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic. This model includes both mitochondrial and peroxisomal forms of citrate synthase. Citrate synthase is the entry point to the TCA cycle from acetyl-CoA. Peroxisomal forms, such as SP:P08679 from yeast (recognized by the C-terminal targeting motif SKL) act in the glyoxylate cycle. Eukaryotic homologs excluded by the high trusted cutoff of this model include a Tetrahymena thermophila citrate synthase that doubles as a filament protein, a putative citrate synthase from Plasmodium falciparum (no TCA cycle), and a methylcitrate synthase from Aspergillus nidulans.
Probab=100.00 E-value=9e-49 Score=420.39 Aligned_cols=234 Identities=19% Similarity=0.245 Sum_probs=208.0
Q ss_pred hHHHhhcCcccCcHHHHHHHhh---hcCCCcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCC
Q 007482 332 LNTAIKSGKVRAPTHIISTISD---DRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHG 408 (602)
Q Consensus 332 ~~~a~~~~Li~~~~~i~t~I~~---~~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg 408 (602)
++++.. |++..|.+++.+++ ..|++ +.++.+++ +.+||++|+ . . +++...++||.+||||||||
T Consensus 170 ~e~~~~--LiAk~P~i~A~~yr~~~~~g~~-i~p~~~l~-------~a~Nfl~Ml-~-~-~~~~~~~~l~~~LiLhADHe 236 (427)
T TIGR01793 170 YEDSMD--LIAKLPTVAAYIYRNMYKDGQS-ISIDDSKD-------YSANFAHML-G-Y-DSPSFQELMRLYLTIHSDHE 236 (427)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHhcCCCc-cCCCCCcc-------HHHHHHHHh-c-C-CCHHHHHHHHHHHhhhcccc
Confidence 444554 89999999999887 35676 66888888 999999998 3 3 77888999999999999999
Q ss_pred -CCCccchheeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhc------cccCHHHHHHHHHHcCCCcCCC
Q 007482 409 -PCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYD------RGLSAYEFVESMKKKGIRVPGI 480 (602)
Q Consensus 409 -~~~st~~a~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~------~~~~~~~~v~~~~~~~~~ipGf 480 (602)
+|+|| |++|+++||++|+|+|++||++++ ||+||||+++|++||+++.+ +.+++++||++.+++|++||||
T Consensus 237 g~NaST-faarvvaSt~ad~y~~v~Agi~aL~GPlHGgAn~~vl~~l~ei~~~ig~~~s~~~v~~~i~~~l~~g~~i~Gf 315 (427)
T TIGR01793 237 GGNVSA-HTGHLVGSALSDPYLSFAAALNGLAGPLHGLANQEVLLWLKSVVSECGENVTKEQLKDYIWKTLNSGKVVPGY 315 (427)
T ss_pred cccchh-HHHHHhhccCCCHHHHHHHHHhhccCCccCCcHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCcccCC
Confidence 89999 999999999999999999999999 99999999999999999853 2257899999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH------hccCCCccchhHHHHHHHHHHhhc-cCCCChH
Q 007482 481 GHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTL------SKANNLVLNVDGAIGSLFLDLLAG-SGMFSKQ 553 (602)
Q Consensus 481 GH~v~~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~------~~~~~l~~Nvd~~~a~l~~~lG~~-~~~ft~~ 553 (602)
|||+|+. .|||+.+|++++.+....++++++++++++++. .+.++++||||||+|++++.||+| .++||+
T Consensus 316 GH~vyr~--~DPRa~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~pNVD~~sg~l~~~lGip~~~~~t~- 392 (427)
T TIGR01793 316 GHAVLRK--TDPRYICQREFALKHLPDDPLFKLVSNLYKIVPGILTELGKVKNPWPNVDAHSGVLLQYYGLTEARYYTV- 392 (427)
T ss_pred CCCCCCC--CCCCcHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHcCCCchhhhhh-
Confidence 9999996 489999999999988888899999999998652 245899999999999999999998 589999
Q ss_pred HHHHHHhhcchhhhHHHHhhhhhhhhHHHhhhhcCCCCCCCC
Q 007482 554 EIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPW 595 (602)
Q Consensus 554 e~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~~P~~r~~~ 595 (602)
+|++||++||+||++||+...+|+.|...
T Consensus 393 -------------lFavsR~~Gw~AH~ieq~~~~~~I~RP~s 421 (427)
T TIGR01793 393 -------------LFGVSRALGILSQLIWDRALGLPLERPKS 421 (427)
T ss_pred -------------HhhhhccchHHHHHHHHHHcCCCccCCcc
Confidence 99999999999999999977788888743
No 42
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=100.00 E-value=9.9e-49 Score=416.54 Aligned_cols=223 Identities=21% Similarity=0.300 Sum_probs=202.2
Q ss_pred CcccCcHHHHHHHhh-hcCCCcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchhe
Q 007482 339 GKVRAPTHIISTISD-DRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNT 417 (602)
Q Consensus 339 ~Li~~~~~i~t~I~~-~~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~ 417 (602)
+|++..+.++..+.+ ..+.++..++.+++ +.+|+++|+ ++++|+++++++||++||++||||+|+|| |++
T Consensus 119 ~lia~~~~i~a~~~~~~~g~~~~~p~~~~~-------~~~~~~~~~-~g~~p~~~~~~~l~~~Lvl~aDH~~n~St-fa~ 189 (358)
T cd06118 119 RLIAKLPTIAANIYRNREGLEIIAPDPDLS-------YAENFLYML-FGEEPDPEEAKAMDLALILHADHEGNAST-FTA 189 (358)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCccc-------HHHHHHHHh-cCCCCCHHHHHHHHHHHhhhcCCCCChHH-HHH
Confidence 478888888777655 57888888888888 888888888 58889999999999999999999999999 999
Q ss_pred eeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhccccCHHHHHHHHHHcCCCcCCCCCCCCCCCCCcHHHHH
Q 007482 418 IVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVEL 496 (602)
Q Consensus 418 r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGfGH~v~~~~~~DPRa~~ 496 (602)
|+++||++|+|+|++||++++ ||+||||++.|++||+++.+. +++++++++.+++|++|||||||+|+. .|||+++
T Consensus 190 R~~aSt~ad~~~av~agl~al~GplHGGA~~~~~~~l~~~~~~-~~~~~~i~~~l~~~~~i~GfGH~vyk~--~DPRa~~ 266 (358)
T cd06118 190 RVVASTLSDMYSAIAAAIAALKGPLHGGANEAVLKMLLEIGTP-ENVEAYIWKKLANKRRIMGFGHRVYKT--YDPRAKI 266 (358)
T ss_pred HHHHccCCCHHHHHHHHHHHccCccccChHHHHHHHHHHhCCc-hHHHHHHHHHHhcCCeecCCCCCCCCC--CCCchHH
Confidence 999999999999999999999 999999999999999999876 689999999999999999999999986 4899999
Q ss_pred HHHHHHHhCC---CChHHHHHHHHHHHHHhcc--CCCccchhHHHHHHHHHHhhccCCCChHHHHHHHhhcchhhhHHHH
Q 007482 497 LQKFARTHFP---SVKYMEYAVQVETYTLSKA--NNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLA 571 (602)
Q Consensus 497 L~~~~~~~~~---~~~~~~~a~~ie~~~~~~~--~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~ 571 (602)
|+++++++.. .++++++++++|+++.+.. |+++||||||+|+++++||+|.++||+ +|++|
T Consensus 267 L~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~r~l~pNvd~~~~~l~~~lg~p~~~~~~--------------lf~i~ 332 (358)
T cd06118 267 LKELAEELAEEKGDDKLFEIAEELEEIALEVLGEKGIYPNVDFYSGVVYKALGFPTELFTP--------------LFAVS 332 (358)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCCCCCcChHHHHHHHHHHcCcCHHHHhH--------------HHHHH
Confidence 9999998854 5899999999999886643 699999999999999999999988888 99999
Q ss_pred hhhhhhhhHHHhhhhc
Q 007482 572 RSIGLIGHTFDQKRLK 587 (602)
Q Consensus 572 R~~G~iAH~~Eq~~~~ 587 (602)
|++||+||++||++..
T Consensus 333 R~~Gw~AH~~Eq~~~~ 348 (358)
T cd06118 333 RAVGWLAHIIEYRENN 348 (358)
T ss_pred HHhHHHHHHHHHHhCC
Confidence 9999999999998443
No 43
>PRK14032 citrate synthase; Provisional
Probab=100.00 E-value=2.4e-48 Score=420.73 Aligned_cols=231 Identities=19% Similarity=0.292 Sum_probs=201.5
Q ss_pred cCcccCcHHHHHHHhh----hc-CCC--cccCCCCCcccccCCCcHHHHHHHhhhCC-CCchhHHHHHHHHHHHhcCCC-
Q 007482 338 SGKVRAPTHIISTISD----DR-GEE--PCYAGVPMSSIVEQGYGVGDVISLLWFKR-SLPRYCTQFIEICIMLCADHG- 408 (602)
Q Consensus 338 ~~Li~~~~~i~t~I~~----~~-g~~--i~~rg~dL~~li~~~~~~~~~l~~l~~~~-~~~~~~~~~l~~~Lvl~aDHg- 408 (602)
++|++..+.+++.+.+ .. |.+ +..++.+++ +.+||++|+ +++ +|++.++++||++||||||||
T Consensus 169 ~rLiA~~p~i~A~~yr~~~~~~~g~~~~~~~p~~~ls-------~a~nfl~ml-~g~~~p~~~~~~~ld~~LiL~ADHg~ 240 (447)
T PRK14032 169 ISLIARFPTLAVYAYQAYRHYHDGKSLYIHPPKPELS-------TAENILYML-RPDNKYTELEARLLDLALVLHAEHGG 240 (447)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCccccCCCCCCC-------HHHHHHHHh-ccCCCCCHHHHHHHHHHHHHHhccCC
Confidence 3489999999998876 23 665 446888888 899999988 577 888899999999999999999
Q ss_pred CCCccchheeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhc------cccCHHHHHHHHHH-----cCCC
Q 007482 409 PCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYD------RGLSAYEFVESMKK-----KGIR 476 (602)
Q Consensus 409 ~~~st~~a~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~------~~~~~~~~v~~~~~-----~~~~ 476 (602)
+|+|| |++|+++||++|+|+||+||++++ ||+||||++.|++||+++.+ +.+++++++++.++ ++++
T Consensus 241 ~naST-faaRv~aSt~ad~ysavaagi~aL~GplHGGA~e~v~~~l~ei~~~~~~~~s~~~v~~~v~~~l~~~~~~~~~r 319 (447)
T PRK14032 241 GNNST-FTTRVVSSSGTDTYSAIAAAIGSLKGPKHGGANIKVMEMFEDIKENVKDWEDEDEIADYLTKILNKEAFDKSGL 319 (447)
T ss_pred CchhH-HHHHHHHccCCcHHHHHHHHHHhccCccccCHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhccccccCCc
Confidence 79999 999999999999999999999999 99999999999999999973 22467889998886 5689
Q ss_pred cCCCCCCCCCCCCCcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHh-------ccCCCccchhHHHHHHHHHHhhc
Q 007482 477 VPGIGHRIKRGDNRDKRVELLQKFARTHF---PSVKYMEYAVQVETYTLS-------KANNLVLNVDGAIGSLFLDLLAG 546 (602)
Q Consensus 477 ipGfGH~v~~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~ie~~~~~-------~~~~l~~Nvd~~~a~l~~~lG~~ 546 (602)
|||||||+|+. .|||+++|+++++++. ...+++++++++|+++.+ .+++++||||||+|+++++||||
T Consensus 320 i~GFGHrvyk~--~DPRa~~L~~~~~~l~~~~g~~~~~~~~~~~e~~~~~~~~~~~~~~k~l~pNVDfysa~i~~~lGip 397 (447)
T PRK14032 320 IYGMGHAVYTI--SDPRAVILKKFAEKLAKEKGREEEFNLYEKIEKLAPELIAEERGIYKGVSANVDFYSGFVYDMLGIP 397 (447)
T ss_pred ccCCCCCCCCC--CCccHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhccCCCCCcChhhHHHHHHHHcCCC
Confidence 99999999986 4899999999999884 345678889888886532 35899999999999999999999
Q ss_pred cCCCChHHHHHHHhhcchhhhHHHHhhhhhhhhHHHhh----hhcCCCCCC
Q 007482 547 SGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQK----RLKQPLYRH 593 (602)
Q Consensus 547 ~~~ft~~e~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~----~~~~P~~r~ 593 (602)
.++||+ +|++||++||+|||+||+ ++.||...|
T Consensus 398 ~~~~t~--------------lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~Y 434 (447)
T PRK14032 398 EELYTP--------------LFAIARIVGWSAHRIEELVNGGKIIRPAYKS 434 (447)
T ss_pred hhhhhh--------------hHHHHhHHHHHHHHHHHHhcCCceeccccee
Confidence 999999 999999999999999997 245787777
No 44
>PRK09569 type I citrate synthase; Reviewed
Probab=100.00 E-value=2.8e-48 Score=418.16 Aligned_cols=227 Identities=19% Similarity=0.239 Sum_probs=201.6
Q ss_pred CcccCcHHHHHHHhhhc--CCCcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCC-CCCccch
Q 007482 339 GKVRAPTHIISTISDDR--GEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHG-PCVSGAH 415 (602)
Q Consensus 339 ~Li~~~~~i~t~I~~~~--g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg-~~~st~~ 415 (602)
+|++..+.++..++++. +.+++.++.+++ +.+||++|+ .+. +...++||++||+||||| +|+|| |
T Consensus 175 rliA~~p~i~A~~yr~~~~g~~~~~p~~~ls-------~a~NFl~Ml-~~~---~~~~~~l~~~LiL~ADHe~~naST-f 242 (437)
T PRK09569 175 DLVARIPVIAAYIYNLKYKGDKQIPSDPELD-------YGANFAHMI-GQP---KPYKDVARMYFILHSDHESGNVSA-H 242 (437)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCcC-------HHHHHHHHh-cCC---chHHHHHHHHHhhhhccCCCcchH-H
Confidence 48999999999887753 778888999999 999999998 442 456899999999999999 79999 9
Q ss_pred heeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhc-------cccCHHHHHHHHHHcCCCcCCCCCCCCCC
Q 007482 416 NTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYD-------RGLSAYEFVESMKKKGIRVPGIGHRIKRG 487 (602)
Q Consensus 416 a~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~-------~~~~~~~~v~~~~~~~~~ipGfGH~v~~~ 487 (602)
++|+++||++|+|+|++||++++ ||+||||++.|++||+++.+ ..++++++|++.++++++|||||||+|+.
T Consensus 243 aaRvvaSt~ad~ysav~Agi~aL~GplHGGA~e~v~~~l~~i~~~~~~~~~~~~~~~~~v~~~l~~~~ri~GFGHrvyk~ 322 (437)
T PRK09569 243 TTHLVASALSDAYYSYSAGLNGLAGPLHGLANQEVLGWIQQFQEKLGGEEPTKEQVEQALWDTLNAGQVIPGYGHAVLRK 322 (437)
T ss_pred HHHHHhccCCCHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCcccCCCCCCCCC
Confidence 99999999999999999999999 99999999999999998862 22578999999999999999999999986
Q ss_pred CCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHh------ccCCCccchhHHHHHHHHHHhhc-cCCCChHHHHHHHh
Q 007482 488 DNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLS------KANNLVLNVDGAIGSLFLDLLAG-SGMFSKQEIDEIVE 560 (602)
Q Consensus 488 ~~~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~~------~~~~l~~Nvd~~~a~l~~~lG~~-~~~ft~~e~~~~~p 560 (602)
.|||+++|+++++++...++++++++++|+++.+ +.++++||||||+|+++++||+| .++||+
T Consensus 323 --~DPRa~~L~~~a~~~~~~~~~~~ia~~~e~v~~~~~~~~~~~~~l~pNVD~~sg~l~~~lGip~~~~~t~-------- 392 (437)
T PRK09569 323 --TDPRYTAQREFCLKHLPDDPLFKLVAMIFEVAPGVLTEHGKTKNPWPNVDAQSGVIQWYYGVKEWDFYTV-------- 392 (437)
T ss_pred --CCCchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCChHHHHHHHHHHcCCCchhhhHH--------
Confidence 4899999999999998888999999999986532 35889999999999999999998 599988
Q ss_pred hcchhhhHHHHhhhhhhhhHHHhhh----hcCCCCCC
Q 007482 561 IGYLNGLFVLARSIGLIGHTFDQKR----LKQPLYRH 593 (602)
Q Consensus 561 ~~~~~~lf~~~R~~G~iAH~~Eq~~----~~~P~~r~ 593 (602)
+|++||++||+||++||+. +.||..+|
T Consensus 393 ------lFaisR~~Gw~AH~iEq~~~~~~i~RP~~~Y 423 (437)
T PRK09569 393 ------LFGVGRALGVMANITWDRGLGYAIERPKSVT 423 (437)
T ss_pred ------HHHHHHHHHHHHHHHHHHhCCCCccCCcccc
Confidence 9999999999999999984 34565554
No 45
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site []. The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH []. This entry represents types I and II citrate synthase enzymes, as well as the related enzymes 2-methylcitrate synthase and ATP citrate synthase. 2-methylcitrate (2.3.3.5 from EC) synthase catalyses the conversion of oxaloacetate and propanoyl-CoA into (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate and coenzyme A. This enzyme is induced during bacterial growth on propionate, while type II hexameric citrate synthase is constitutive []. ATP citrate synthase (2.3.3.8 from EC) (also known as ATP citrate lyase) catalyses the MgATP-dependent, CoA-dependent cleavage of citrate into oxaloacetate and acetyl-CoA, a key step in the reductive tricarboxylic acid pathway of CO2 assimilation used by a variety of autotrophic bacteria and archaea to fix carbon dioxide []. ATP citrate synthase is composed of two distinct subunits. In eukaryotes, ATP citrate synthase is a homotetramer of a single large polypeptide, and is used to produce cytosolic acetyl-CoA from mitochondrial produced citrate [].; GO: 0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, 0044262 cellular carbohydrate metabolic process; PDB: 2C6X_D 3L96_B 1OWB_B 1NXG_A 1K3P_A 1OWC_B 3L97_B 1NXE_A 3L98_A 3L99_A ....
Probab=100.00 E-value=6.8e-49 Score=418.00 Aligned_cols=230 Identities=29% Similarity=0.406 Sum_probs=189.4
Q ss_pred cCcccCcHHHHHHHhh-hcCCCcccCCCCCcccccCCCcHHHHHHHhh-hCCCCchhHHHHHHHHHHHhcCCCCCCccch
Q 007482 338 SGKVRAPTHIISTISD-DRGEEPCYAGVPMSSIVEQGYGVGDVISLLW-FKRSLPRYCTQFIEICIMLCADHGPCVSGAH 415 (602)
Q Consensus 338 ~~Li~~~~~i~t~I~~-~~g~~i~~rg~dL~~li~~~~~~~~~l~~l~-~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~ 415 (602)
+++++..+.++..+++ ..++++..++.+++ ..+||++|+. +|++|+++++++||++||+++|||+|+|| |
T Consensus 118 ~~liA~~p~i~a~~~~~~~g~~~~~p~~~~~-------~~~n~l~~l~~~g~~p~~~~~~~l~~~lvl~aDH~~~~St-~ 189 (356)
T PF00285_consen 118 IRLIAKIPTIVAAIYRHRRGQPPIPPDPDLS-------YAENFLYMLGVTGREPDPEEARALDAALVLHADHGLNPST-F 189 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS------TTSS-------HHHHHHHHHH-HSSB--HHHHHHHHHHHHHHS--SSSHHH-H
T ss_pred HHHhhcchHHHHHHHHHhCCCCccccccchH-------HHHHHHHHhhccccCCChHHHHHHHHHHHhhcCCCCCccc-h
Confidence 4578888888888766 57888888888888 7888887762 57788999999999999999999999999 9
Q ss_pred heeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhccccCHHHHHHHHHHcCCCcCCCCCCCCCCCCCcHHH
Q 007482 416 NTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRV 494 (602)
Q Consensus 416 a~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGfGH~v~~~~~~DPRa 494 (602)
++|+++||++|+|+|++||++++ ||+||||+++|++||+++.+. ++++++|+++++++++|||||||+|+. .|||+
T Consensus 190 aaR~~aSt~~~~~~av~agl~al~G~~hgga~~~~~~~l~~i~~~-~~~~~~v~~~l~~~~~i~GfGH~vy~~--~DPRa 266 (356)
T PF00285_consen 190 AARVAASTGADLYSAVAAGLAALSGPLHGGANEAAMRMLQEIGSP-ENVEEYVEERLAKGERIPGFGHRVYKN--GDPRA 266 (356)
T ss_dssp HHHHHHTTT--HHHHHHHHHHHHCSTTTTTHHHHHHHHHHHHSSG-GGHHHHHHHHHHTTSTTTTBCESSSSS----HHH
T ss_pred hhhhhhccCcchhHHHHhhhhhccCcccccccHHHHHHHHHHHhh-HHHHHHHHHHHhccccccccCCCcCCC--CCCCh
Confidence 99999999999999999999998 999999999999999999776 699999999999999999999999995 49999
Q ss_pred HHHHHHHHHhC---CCChHHHHHHHHHHHHHh--ccCCCccchhHHHHHHHHHHhhccCCCChHHHHHHHhhcchhhhHH
Q 007482 495 ELLQKFARTHF---PSVKYMEYAVQVETYTLS--KANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFV 569 (602)
Q Consensus 495 ~~L~~~~~~~~---~~~~~~~~a~~ie~~~~~--~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~ 569 (602)
+.|+++++++. ..++++++++++|+++.+ ++++++|||||++|+++++||+|.++||+ +|+
T Consensus 267 ~~l~~~~~~~~~~~~~~~~~~~~~~ie~~~~~~~~~~~l~pNvd~~~a~l~~~lG~p~~~~~~--------------if~ 332 (356)
T PF00285_consen 267 EALLALARELGEEFPDGPLVELAEAIEEAAPEDFKERKLYPNVDFYSAALLRALGFPPELFTA--------------IFA 332 (356)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTESB-THHHHHHHHHHTT--GGGHHH--------------HHH
T ss_pred HHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHhcchhhchH--------------HHH
Confidence 99999999997 889999999999999876 36689999999999999999987776666 999
Q ss_pred HHhhhhhhhhHHHhhhhcCCCCC
Q 007482 570 LARSIGLIGHTFDQKRLKQPLYR 592 (602)
Q Consensus 570 ~~R~~G~iAH~~Eq~~~~~P~~r 592 (602)
+||++||+||++||++...++.|
T Consensus 333 ~~R~~Gw~AH~~Eq~~~~~~i~R 355 (356)
T PF00285_consen 333 LSRTAGWIAHILEQRQLNNKIIR 355 (356)
T ss_dssp HHHHHHHHHHHHHHHHCT-----
T ss_pred HHHHHHHHHHHHHHHhcCCCCCC
Confidence 99999999999999975666665
No 46
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) h
Probab=100.00 E-value=2.8e-48 Score=417.06 Aligned_cols=235 Identities=21% Similarity=0.327 Sum_probs=201.8
Q ss_pred hHHHhhcCcccCcHHHHHHHhhh-----cCC--CcccCCCCCcccccCCCcHHHHHHHhhhC-CCCchhHHHHHHHHHHH
Q 007482 332 LNTAIKSGKVRAPTHIISTISDD-----RGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFK-RSLPRYCTQFIEICIML 403 (602)
Q Consensus 332 ~~~a~~~~Li~~~~~i~t~I~~~-----~g~--~i~~rg~dL~~li~~~~~~~~~l~~l~~~-~~~~~~~~~~l~~~Lvl 403 (602)
++++. +|++..+.++..+++. .++ ++..++.+++ +.+||++|+ ++ ++|++.++++||++|||
T Consensus 135 ~~~a~--rLiA~~p~i~A~~yr~~~~~~~~~~~~~~~p~~~ls-------~a~nfl~ml-~g~~~p~~~~~~~l~~~Lvl 204 (406)
T cd06113 135 LRQSI--QLIARLPTIAVYAYQAKRHYYDGESLYIHHPQPELS-------TAENILSML-RPDKKYTELEAKLLDLCLVL 204 (406)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHhhhccCCCccccCCCCCCC-------HHHHHHHHh-ccCCCCCHHHHHHHHHHHhh
Confidence 34444 4899999999988763 233 3657888888 889999888 56 47888999999999999
Q ss_pred hcCCC-CCCccchheeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHHHHhc------cccCHHHHHHHHHHcC-
Q 007482 404 CADHG-PCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYD------RGLSAYEFVESMKKKG- 474 (602)
Q Consensus 404 ~aDHg-~~~st~~a~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~~~~~------~~~~~~~~v~~~~~~~- 474 (602)
+|||| +|+|| |++|+++||++|+|+||+||++++ ||+||||+++|++||+++.+ +.+++++++++.++++
T Consensus 205 ~ADHg~~naST-~aaRv~aSt~ad~~~avaagi~al~GplHGGA~e~v~~~l~~i~~~~~~~~~~~~v~~~v~~~l~~~~ 283 (406)
T cd06113 205 HAEHGGGNNST-FTTRVVSSSGTDTYSAIAAAIGSLKGPRHGGANIKVMEMLEDIKENVKDWTDEDEVRAYLRKILNKEA 283 (406)
T ss_pred hhccCCCcchH-HHHHHHHccCCCHHHHHHHHHHHccCccccChHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhccc
Confidence 99999 89999 999999999999999999999999 99999999999999999974 2257888999988776
Q ss_pred ----CCcCCCCCCCCCCCCCcHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHH-------hccCCCccchhHHHHHHH
Q 007482 475 ----IRVPGIGHRIKRGDNRDKRVELLQKFARTHF---PSVKYMEYAVQVETYTL-------SKANNLVLNVDGAIGSLF 540 (602)
Q Consensus 475 ----~~ipGfGH~v~~~~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~ie~~~~-------~~~~~l~~Nvd~~~a~l~ 540 (602)
++|||||||+|+. .|||+++|+++++++. ...+++++++++|+++. .++++++||||||+|+++
T Consensus 284 ~~~~~~l~GFGHrvyk~--~DPRa~~L~~~~~~l~~~~~~~~~~~~~~~ie~~~~~~~~~~~~~~r~l~pNvD~~sa~l~ 361 (406)
T cd06113 284 FDKSGLIYGMGHAVYTL--SDPRAVVLKKYARSLAKEKGREEEFALYERIERLAPEVIAEERGIGKTVCANVDFYSGFVY 361 (406)
T ss_pred cccCceeecCCCCCCCC--CCccHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHhhccCCCCCCChHHHHHHHH
Confidence 5999999999996 4899999999998874 33569999999998652 235899999999999999
Q ss_pred HHHhhccCCCChHHHHHHHhhcchhhhHHHHhhhhhhhhHHHhhh----hcCCCCCC
Q 007482 541 LDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKR----LKQPLYRH 593 (602)
Q Consensus 541 ~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~----~~~P~~r~ 593 (602)
++||+|.++||+ +|++||++||+|||+||+. +.||..+|
T Consensus 362 ~~lG~p~~~~t~--------------lF~isR~~Gw~AH~~Eq~~~~~~l~RP~~~Y 404 (406)
T cd06113 362 KMLGIPQELYTP--------------LFAVARIVGWCAHRIEELLNSGRIIRPAYKY 404 (406)
T ss_pred HHcCCChhhhhh--------------HHHHHhHHHHHHHHHHHHhcCCceecccccc
Confidence 999999999988 9999999999999999973 34666554
No 47
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=5.5e-45 Score=352.07 Aligned_cols=283 Identities=30% Similarity=0.460 Sum_probs=255.9
Q ss_pred CCCCCcEEEEeeCCcH----HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecC
Q 007482 6 LFSKTTQALFYNYKQL----PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSS 81 (602)
Q Consensus 6 l~~p~s~avv~g~~~~----~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp 81 (602)
+++.++++++.|++|+ +.+++++||+++|+|++ |++++ ++.+|+|+|.||+|+.++. +.|..||+||
T Consensus 34 ~ink~TkVi~QGfTGKqgTFHs~q~~eYgTk~VgG~~-pkK~G-------t~HLG~PVF~sV~eA~~~t-~a~AsvIyVP 104 (329)
T KOG1255|consen 34 KINKDTKVICQGFTGKQGTFHSQQALEYGTKVVGGVN-PKKGG-------TTHLGLPVFNSVAEAKKET-GADASVIYVP 104 (329)
T ss_pred eecCCceEEEecccCCccceeHHHHHHhCCceeeccC-CCcCc-------ccccCchhhhhHHHHHHhh-CCCceEEEeC
Confidence 5789999999999988 99999999999999998 98874 8999999999999998876 5999999999
Q ss_pred ChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHH-hCCCeeEcCCcccccccCcccccccCCcccccccccCCC
Q 007482 82 FRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYAR-SNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYR 160 (602)
Q Consensus 82 ~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~-~~g~riiGPNc~G~~~~~~~~l~~~~~~~~~~~p~~~~~ 160 (602)
++.+..++.|+++ +.|+.+|+|++|+|..++.++.+... +...|++||||.|+|+|.+|++| ++|....+
T Consensus 105 pp~Aa~aI~eaie-aEipLiVcITEGIPQhDMvrvk~~L~~Q~KtRLvGPNCPGII~p~qckIG--------ImPg~Ihk 175 (329)
T KOG1255|consen 105 PPFAAAAIEEAIE-AEIPLIVCITEGIPQHDMVRVKHALNSQSKTRLVGPNCPGIINPGQCKIG--------IMPGHIHK 175 (329)
T ss_pred ChhHHHHHHHHHh-ccCCEEEEecCCCchhhHHHHHHHHhhcccceecCCCCCCccCccceeec--------cccccccc
Confidence 9986666666555 89999999999999999888877664 45789999999999999999996 56777789
Q ss_pred CCcEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHh
Q 007482 161 PGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQ 240 (602)
Q Consensus 161 ~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~ 240 (602)
+|.|++||+||+|.++.+.+-.+-|+|+|.+|.+|++.+++++|-|+|+.|.+||+|+.|+|..|||...+++-++.+++
T Consensus 176 ~G~IGIVSRSGTLTYEaVhQTT~vglGQslcvGiGGDpFnGT~FID~L~vFl~D~~t~GIiliGEIGG~AEe~AA~flk~ 255 (329)
T KOG1255|consen 176 RGKIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTNFIDCLEVFLEDPETEGIILIGEIGGSAEEEAAEFLKE 255 (329)
T ss_pred CCeeEEEecCCceeehhhhhhccccccceeEEeecCCCCCCccHHHHHHHHhcCcccceEEEEeccCChhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887777776
Q ss_pred c---CCCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHHH
Q 007482 241 G---KVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFE 309 (602)
Q Consensus 241 ~---~~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~~ 309 (602)
. ...||||.+.+|.+++ ..+.++|+|++.....++|..+.++|+.+||++++|+..|-......+.
T Consensus 256 ~nSg~~~kPVvsFIAG~tAp---pGrRMGHaGAIisGgkg~A~dKi~aL~~agV~vt~sPa~lG~~~~~~~~ 324 (329)
T KOG1255|consen 256 YNSGSTAKPVVSFIAGVTAP---PGRRMGHAGAIISGGKGTAKDKIAALRDAGVVVTESPAKLGSAMLEEFL 324 (329)
T ss_pred hccCCCCCceeEEeecccCC---CcccccccceeeeCCCccHHHHHHHHHhcCeEEEcCHHHHHHHHHHHHH
Confidence 3 3689999999999986 6889999999999999999999999999999999999998776654443
No 48
>PRK06091 membrane protein FdrA; Validated
Probab=100.00 E-value=2.7e-40 Score=360.05 Aligned_cols=209 Identities=21% Similarity=0.263 Sum_probs=183.2
Q ss_pred cccccCCHHHHhhcCCCccEEEEecCChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCcccc
Q 007482 56 AIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGG 135 (602)
Q Consensus 56 G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc~G~ 135 (602)
+.|.|+++.++....|++|+|||+||+.. +++++++|.++| +.++|+|+||+..+|++|+++|+++|+||+|||| |+
T Consensus 101 ~~~~~~t~~~a~~~lpe~DLAvIsVPa~~-v~~al~ea~~~G-~~viI~S~gfg~~~E~~L~e~Ar~~GlrvmGPNC-G~ 177 (555)
T PRK06091 101 SLTQVRRWDSACQKLPDANLALISVAGEY-AAELAEQALDRN-LNVMMFSDNVTLEDEIRLKTRAREKGLLVMGPDC-GT 177 (555)
T ss_pred CCcccccHHHHHhcCCCCCEEEEecCHHH-HHHHHHHHHHcC-CeEEEEcCCCCHHHHHHHHHHHHHcCCEEECCCC-hh
Confidence 35666677666655567899999999986 677778888899 7799999999999999999999999999999999 77
Q ss_pred cccCcccccccCCcccccccccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCC----CCCCHHHHHHHh
Q 007482 136 IQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVF----PGSTLSDHILRF 211 (602)
Q Consensus 136 ~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~----~dv~~~d~l~~l 211 (602)
+| .. ++ +++|++. ++||+||+|||||+++.++++|+.++|+|||++||+||+.+ .|+++.|+|+||
T Consensus 178 ~~-i~-gl---~lsF~~~-----~~~G~IgiVSQSGtl~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L 247 (555)
T PRK06091 178 AM-IA-GT---PLAFANV-----MPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEML 247 (555)
T ss_pred hh-hc-CC---cccccCC-----CCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHH
Confidence 76 33 45 6777643 25999999999999999999999999999999999999932 389999999999
Q ss_pred hcCCCccEEEEEE----ecCCCcHHHHHHHHHhcCCCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHHHHHH
Q 007482 212 NNIPQVKMMVVLG----ELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALR 287 (602)
Q Consensus 212 ~~Dp~t~~I~ly~----E~g~~~~~~f~~~~r~~~~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~ 287 (602)
.+||+||+|++|+ | ++++ +|++++|++ +||||++|+||++.+ + +
T Consensus 248 ~~DP~TkvIvly~kppaE-~v~~--~fl~aar~~--~KPVVvlk~Grs~~g--~-------------------------~ 295 (555)
T PRK06091 248 SADEKSEVIAFVSKPPAE-AVRL--KIINAMKAT--GKPVVALFLGYTPAV--A-------------------------R 295 (555)
T ss_pred hhCCCCcEEEEEEecCch-HHHH--HHHHHHhhC--CCCEEEEEecCCchh--h-------------------------h
Confidence 9999999999999 7 7774 999999985 899999999999987 1 8
Q ss_pred HcCCcccCCHHHHHHHHHHHHH
Q 007482 288 DAGAVVPTSYEAFESAIKETFE 309 (602)
Q Consensus 288 qaGvi~v~~~~el~~~~~~~~~ 309 (602)
|+|++++++++|+++++..|..
T Consensus 296 q~GVi~a~tleEl~~~A~~la~ 317 (555)
T PRK06091 296 DENVWFASTLDEAARLACLLSR 317 (555)
T ss_pred cCCeEEeCCHHHHHHHHHHHhc
Confidence 9999999999999999988773
No 49
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=100.00 E-value=1.6e-41 Score=314.04 Aligned_cols=137 Identities=23% Similarity=0.376 Sum_probs=100.4
Q ss_pred CCcEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHh
Q 007482 161 PGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQ 240 (602)
Q Consensus 161 ~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~ 240 (602)
||+||+|||||+++.++++++.++|+|||++||+||++ |+++.|+|+||.+||+||+|++|+| +++|+++|++++|+
T Consensus 1 ~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~--dv~~~d~l~~~~~D~~t~~I~ly~E-~~~d~~~f~~~~~~ 77 (138)
T PF13607_consen 1 PGGVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEA--DVDFADLLEYLAEDPDTRVIVLYLE-GIGDGRRFLEAARR 77 (138)
T ss_dssp E-SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-S--SS-HHHHHHHHCT-SS--EEEEEES---S-HHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccc--cCCHHHHHHHHhcCCCCCEEEEEcc-CCCCHHHHHHHHHH
Confidence 69999999999999999999999999999999999999 9999999999999999999999999 99999999999999
Q ss_pred cCCCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHH
Q 007482 241 GKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKE 306 (602)
Q Consensus 241 ~~~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~ 306 (602)
++++||||+||+||++.| ++++.||||+++|++ .+|+++|+|+|+++++|++||++++++
T Consensus 78 a~~~KPVv~lk~Grt~~g--~~aa~sHTgslag~~----~~~~a~~~~aGv~~v~~~~el~~~~~~ 137 (138)
T PF13607_consen 78 AARRKPVVVLKAGRTEAG--ARAAASHTGSLAGDD----AVYDAALRQAGVVRVDDLDELLDAAKA 137 (138)
T ss_dssp HCCCS-EEEEE-----------------------H----HHHHHHHHHCTEEEESSHHHHHHHHCC
T ss_pred HhcCCCEEEEeCCCchhh--hhhhhccCCcccCcH----HHHHHHHHHcCceEECCHHHHHHHHHh
Confidence 997799999999999999 999999999999999 999999999999999999999999864
No 50
>KOG2617 consensus Citrate synthase [Energy production and conversion]
Probab=100.00 E-value=1.2e-32 Score=283.76 Aligned_cols=233 Identities=20% Similarity=0.257 Sum_probs=202.3
Q ss_pred hHHHhhcCcccCcHHHHHHHhhh-cCCCcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCC
Q 007482 332 LNTAIKSGKVRAPTHIISTISDD-RGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPC 410 (602)
Q Consensus 332 ~~~a~~~~Li~~~~~i~t~I~~~-~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~ 410 (602)
+++... ||+.-+.+..+++.. .++.+..++.+++ +..||.+|+-+. .+...++++.++++|+|||.+
T Consensus 191 ~ed~l~--Liak~p~iAa~iY~~~~~dg~~~~~~~~d-------ys~Nf~~mlg~~---~~~f~~lmrly~~iHadHE~g 258 (458)
T KOG2617|consen 191 YEDCLV--LIAKLPTIAAAIYRNIYADGIPKPDPNLD-------YSANFARMLGSR---QPDFAQLMRLYVGIHADHEGG 258 (458)
T ss_pred HHHHHH--HHHhccHHHHHHHHHHhcCCCCCCCcccc-------hhHhHHHHHccC---ChHHHHHHHHeeeeecccccC
Confidence 455554 677777777777664 4666666788888 999999998543 367899999999999999998
Q ss_pred CccchheeeeecCCCChHHHHHHhhccC-CCCCcChHHHHHHHHH----HHhc--cccCHHHHHHHHHHcCCCcCCCCCC
Q 007482 411 VSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFK----DAYD--RGLSAYEFVESMKKKGIRVPGIGHR 483 (602)
Q Consensus 411 ~st~~a~r~~ast~~~~~~av~agl~a~-Gp~hgGa~~~a~~~l~----~~~~--~~~~~~~~v~~~~~~~~~ipGfGH~ 483 (602)
++++++.++++|+. |+|.+++||+.++ ||+||+|++++.+||. |+++ +.++..++++..+++++.||||||+
T Consensus 259 nVsAh~~HLvGSal-dpyls~aa~~~GLaGPLHGlAnqEvl~~L~~~~~Eig~~~s~e~ikeyiw~~ln~~rvvpGyGHa 337 (458)
T KOG2617|consen 259 NVSAHTGHLVGSAL-DPYLSFAAGMNGLAGPLHGLANQEVLRFLGKLIEEIGKDLSKENIKEYIWKTLNSGRVVPGYGHA 337 (458)
T ss_pred cHHHHhcccccccc-chhHHHHHhhcccccccccCchHHHHHHHHHhHHHhccccchhhhhHhhHHhhcccccccccccc
Confidence 88879999999999 9999999999999 9999999999999999 6652 2368899999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH----h--ccCCCccchhHHHHHHHHHHhhccCCC-ChHHHH
Q 007482 484 IKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTL----S--KANNLVLNVDGAIGSLFLDLLAGSGMF-SKQEID 556 (602)
Q Consensus 484 v~~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~----~--~~~~l~~Nvd~~~a~l~~~lG~~~~~f-t~~e~~ 556 (602)
+++. .|||...+++++.++.+.+|++++...++++.. + +.++.+||||+++|+++..+|++...| |+
T Consensus 338 vlr~--tDPR~~~~~efA~k~~~~d~l~~l~~~l~~~~p~vl~e~gk~knp~PNVD~~SGvll~~yGl~e~~fyTV---- 411 (458)
T KOG2617|consen 338 VLRK--TDPRYKVQREFALKHLPDDPLFLLVSALYKIAPGVLTEHGKVKNPYPNVDAHSGVLLQYYGLPELFFYTV---- 411 (458)
T ss_pred cccC--CCchhhHHHHHHHhcCCCCcchhhhHHHHHhChHHHHHhcccCCCCCcHHHHHHHHHHhcCCcHHHHHHH----
Confidence 9985 599999999999999999999999999998752 2 689999999999999999999876554 55
Q ss_pred HHHhhcchhhhHHHHhhhhhhhhHHHhhhhcCCCCCC
Q 007482 557 EIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRH 593 (602)
Q Consensus 557 ~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~~P~~r~ 593 (602)
+|.++|++|.++|.++.+.+..|+.|.
T Consensus 412 ----------LFgVsRa~Gvlsqliw~ralg~pieRP 438 (458)
T KOG2617|consen 412 ----------LFGVSRALGVLSQLIWDRALGLPIERP 438 (458)
T ss_pred ----------HHHHhhhHHHHHHHHHHHHhCCcccCc
Confidence 999999999999999998888888887
No 51
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=99.76 E-value=6.7e-19 Score=158.82 Aligned_cols=110 Identities=15% Similarity=0.163 Sum_probs=82.4
Q ss_pred CcEEEEeeC------CcHHHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCCh
Q 007482 10 TTQALFYNY------KQLPIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFR 83 (602)
Q Consensus 10 ~s~avv~g~------~~~~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~ 83 (602)
+|+||||.. +.+++++|++.||++ ++|+ |+. +++.|++||+|++|+ ++ ++|++++++|+.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v-~~Vn-p~~---------~~i~G~~~y~sl~e~-p~--~iDlavv~~~~~ 66 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEV-YPVN-PKG---------GEILGIKCYPSLAEI-PE--PIDLAVVCVPPD 66 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EE-EEES-TTC---------SEETTEE-BSSGGGC-SS--T-SEEEE-S-HH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEE-EEEC-CCc---------eEECcEEeeccccCC-CC--CCCEEEEEcCHH
Confidence 589999642 223999999999885 5775 755 589999999999995 43 489999999997
Q ss_pred hhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCccccccc
Q 007482 84 SAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQA 138 (602)
Q Consensus 84 ~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc~G~~~~ 138 (602)
. +++++++|.++|++.++++++ +.++++.++|+++|+|++||||+|+++|
T Consensus 67 ~-~~~~v~~~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~vigp~C~gv~~~ 116 (116)
T PF13380_consen 67 K-VPEIVDEAAALGVKAVWLQPG----AESEELIEAAREAGIRVIGPNCLGVVNP 116 (116)
T ss_dssp H-HHHHHHHHHHHT-SEEEE-TT----S--HHHHHHHHHTT-EEEESS-HHHHHT
T ss_pred H-HHHHHHHHHHcCCCEEEEEcc----hHHHHHHHHHHHcCCEEEeCCcceEEcC
Confidence 5 899999999999999999887 4678999999999999999999999875
No 52
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=98.91 E-value=5.8e-09 Score=98.36 Aligned_cols=121 Identities=31% Similarity=0.368 Sum_probs=97.7
Q ss_pred EecChhHHHHHHHHHHhc--------------CCceeEEeeccCCCCC---------CCCHHHHHHHhhcCCCccEEEEE
Q 007482 167 VSKSGGMSNELYNTIARV--------------TDGIYEGIAIGGDVFP---------GSTLSDHILRFNNIPQVKMMVVL 223 (602)
Q Consensus 167 vSQSG~l~~~~~~~~~~~--------------g~G~s~~vs~Gn~~~~---------dv~~~d~l~~l~~Dp~t~~I~ly 223 (602)
++.||+|+++.++.+.+. +.+.+.++.+|.+.++ .....|.|+-+.+||+|++|++-
T Consensus 1 l~~GgtL~~Ea~~~i~~~~~~~~sn~~~~~~~g~~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~~~Dp~v~vIlvd 80 (153)
T PF00549_consen 1 LYNGGTLAMEAMDLISDALGDVYSNFKLANPLGGGPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIEAADPEVKVILVD 80 (153)
T ss_dssp EESSHHHHHHHHHHHHHTTT------GCCEEETCTEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHHHTSTTESEEEEE
T ss_pred CcCcHHHHHHHHHHHHHhhccccccccccccCCCCceeEEEeCCCcccccCcCCCcCHHHHHHHHHHHhcCCCccEEEEE
Confidence 578999999999999999 9999999999999976 67999999999999999999999
Q ss_pred EecCCCc-H---HHHHHHHHhcC---CCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHHHHHHHcCCcccCC
Q 007482 224 GELGGRD-E---YSLVEALKQGK---VNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTS 296 (602)
Q Consensus 224 ~E~g~~~-~---~~f~~~~r~~~---~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~ 296 (602)
+|+|+.. + ..++++.+++. ++||||++..|+.+.- +. .+.| ..+++++|+..+.+
T Consensus 81 ~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~~dp--q~-~~~~---------------~~~L~~~G~~v~~s 142 (153)
T PF00549_consen 81 IVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVCGTNADP--QG-RMGQ---------------AGALEDAGVIVAES 142 (153)
T ss_dssp EESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEESTTCHT--TS-CHHH---------------HHHHHCTTCSCHHH
T ss_pred eccccCchHHHHHHHHHHHHhccccCCCCcEEEEeeeecCCC--CC-cHHH---------------HHHHHhCCCccccc
Confidence 9988543 3 35666777766 7899999999998873 33 2244 25777777777777
Q ss_pred HHHHHHHHH
Q 007482 297 YEAFESAIK 305 (602)
Q Consensus 297 ~~el~~~~~ 305 (602)
-++....+.
T Consensus 143 ~~~A~~~A~ 151 (153)
T PF00549_consen 143 NAQAARAAG 151 (153)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHcC
Confidence 776665554
No 53
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=98.83 E-value=7e-09 Score=94.50 Aligned_cols=112 Identities=15% Similarity=0.091 Sum_probs=84.7
Q ss_pred CCCCCcEEEEeeCCcH-------HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEE
Q 007482 6 LFSKTTQALFYNYKQL-------PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFIN 78 (602)
Q Consensus 6 l~~p~s~avv~g~~~~-------~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi 78 (602)
|-+-++||||| ++.+ ..+.|++.||+++ +|| |+-. |+|++|.+||+|++||++ +||++-+
T Consensus 13 L~~~K~IAvVG-~S~~P~r~sy~V~kyL~~~GY~Vi-PVN-P~~~-------~~eiLG~k~y~sL~dIpe---~IDiVdv 79 (140)
T COG1832 13 LKSAKTIAVVG-ASDKPDRPSYRVAKYLQQKGYRVI-PVN-PKLA-------GEEILGEKVYPSLADIPE---PIDIVDV 79 (140)
T ss_pred HHhCceEEEEe-cCCCCCccHHHHHHHHHHCCCEEE-eeC-cccc-------hHHhcCchhhhcHHhCCC---CCcEEEE
Confidence 45678999995 4433 9999999999975 886 8544 379999999999999864 4999999
Q ss_pred ecCChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCcccc
Q 007482 79 FSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGG 135 (602)
Q Consensus 79 ~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc~G~ 135 (602)
+.++.. ++.+.+++.++|+|.+= +.-|..- ++..+.++++|+.++==-|+.+
T Consensus 80 FR~~e~-~~~i~~eal~~~~kv~W-~QlGi~n---~ea~~~~~~aG~~vV~nrCi~~ 131 (140)
T COG1832 80 FRRSEA-APEVAREALEKGAKVVW-LQLGIRN---EEAAEKARDAGLDVVMDRCIMI 131 (140)
T ss_pred ecChhh-hHHHHHHHHhhCCCeEE-EecCcCC---HHHHHHHHHhCcHHHHHhhHHH
Confidence 999875 78888888889987544 4555421 2356677888887776666554
No 54
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=98.72 E-value=7e-08 Score=84.12 Aligned_cols=89 Identities=19% Similarity=0.167 Sum_probs=61.3
Q ss_pred CCcEEEEeeCCcH---HHHHHHh-cCCe--EEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCC
Q 007482 9 KTTQALFYNYKQL---PIQRMLD-FDFL--CVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSF 82 (602)
Q Consensus 9 p~s~avv~g~~~~---~~~~~~~-~g~~--~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~ 82 (602)
.++.+++.|+++. .+.++.+ .||. .+.+++ |.+. |+++.|+|+|.+++++.+.. ++|.+|++||+
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~-~~~~-------G~~i~gipV~~~~~~l~~~~-~i~iaii~VP~ 72 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVD-PEKI-------GKEIGGIPVYGSMDELEEFI-EIDIAIITVPA 72 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEEC-TTTT-------TSEETTEEEESSHHHHHHHC-TTSEEEEES-H
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcC-CCcc-------CcEECCEEeeccHHHhhhhh-CCCEEEEEcCH
Confidence 3445555577665 2222222 4544 477777 7554 47999999999999987766 59999999999
Q ss_pred hhhHHHHHHHhhCCCCcEEEEecCC
Q 007482 83 RSAAASSMAALKQPTIRVVAIIAEG 107 (602)
Q Consensus 83 ~~~~~~~~e~~~~~gv~~~viis~G 107 (602)
+.+ .++.+++.++|||.++.+|.|
T Consensus 73 ~~a-~~~~~~~~~~gIk~i~nft~~ 96 (96)
T PF02629_consen 73 EAA-QEVADELVEAGIKGIVNFTPG 96 (96)
T ss_dssp HHH-HHHHHHHHHTT-SEEEEESSS
T ss_pred HHH-HHHHHHHHHcCCCEEEEeCCC
Confidence 874 445555555999999999976
No 55
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.09 E-value=1.2e-05 Score=73.35 Aligned_cols=113 Identities=17% Similarity=0.206 Sum_probs=78.3
Q ss_pred cEEEEeeCCcH----HHHHHHh-cCCeEEEEEeCCC---CCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCC
Q 007482 11 TQALFYNYKQL----PIQRMLD-FDFLCVAGIINPG---AEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSF 82 (602)
Q Consensus 11 s~avv~g~~~~----~~~~~~~-~g~~~V~gv~~p~---~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~ 82 (602)
+|+|+ |.+|| +.+.+.+ .++++++++.-++ .+++..++.|..-.|+++|.+++++.+. +|++|.+.-+
T Consensus 2 rV~i~-G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~---~DVvIDfT~p 77 (124)
T PF01113_consen 2 RVGIV-GASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEE---ADVVIDFTNP 77 (124)
T ss_dssp EEEEE-TTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH----SEEEEES-H
T ss_pred EEEEE-CCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhccc---CCEEEEcCCh
Confidence 35555 77666 5555555 7889998887323 2346666777668899999999998764 7999999866
Q ss_pred hhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCe-eEcCC
Q 007482 83 RSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV-VIGPA 131 (602)
Q Consensus 83 ~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~r-iiGPN 131 (602)
. .+...++.|.+.|++ +|+-|+||.+++.++|.+++++ +. ++-||
T Consensus 78 ~-~~~~~~~~~~~~g~~-~ViGTTG~~~~~~~~l~~~a~~--~~vl~a~N 123 (124)
T PF01113_consen 78 D-AVYDNLEYALKHGVP-LVIGTTGFSDEQIDELEELAKK--IPVLIAPN 123 (124)
T ss_dssp H-HHHHHHHHHHHHT-E-EEEE-SSSHHHHHHHHHHHTTT--SEEEE-SS
T ss_pred H-HhHHHHHHHHhCCCC-EEEECCCCCHHHHHHHHHHhcc--CCEEEeCC
Confidence 4 577888999888887 5556999998888888888776 43 66666
No 56
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.94 E-value=6e-05 Score=77.84 Aligned_cols=121 Identities=21% Similarity=0.238 Sum_probs=84.0
Q ss_pred cEEEEe--eCCcH-HHHHHHh-cCCeEEEEEeCCC--C-CCccccccCceeecccccCCHHHHhhcCCCccEEEEecCCh
Q 007482 11 TQALFY--NYKQL-PIQRMLD-FDFLCVAGIINPG--A-EGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFR 83 (602)
Q Consensus 11 s~avv~--g~~~~-~~~~~~~-~g~~~V~gv~~p~--~-~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~ 83 (602)
.++|+| |..|+ +++.+.+ -++++|+.+..+. . +.+..++.|..-.|+++|.+++++ .. ++|++|.++|+.
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l-~~--~~DvVIdfT~p~ 79 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAV-ET--DPDVLIDFTTPE 79 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHh-cC--CCCEEEECCChH
Confidence 577775 44444 6666665 6788888777331 1 111222222222578999999987 32 489999999887
Q ss_pred hhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCe-eEcCCc-cccc
Q 007482 84 SAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV-VIGPAT-VGGI 136 (602)
Q Consensus 84 ~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~r-iiGPNc-~G~~ 136 (602)
. ..+.++.|.++|++ +|+-+.||.+++.++|.+.|+++|+. +++||. +|+.
T Consensus 80 ~-~~~~~~~al~~g~~-vVigttg~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ 132 (266)
T TIGR00036 80 G-VLNHLKFALEHGVR-LVVGTTGFSEEDKQELADLAEKAGIAAVIAPNFSIGVN 132 (266)
T ss_pred H-HHHHHHHHHHCCCC-EEEECCCCCHHHHHHHHHHHhcCCccEEEECcccHHHH
Confidence 5 66677777778876 55557799999999999999999986 778985 4543
No 57
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=97.75 E-value=0.00029 Score=71.62 Aligned_cols=119 Identities=22% Similarity=0.203 Sum_probs=85.7
Q ss_pred CCcEEEEeeCCcH---HHHHHHh--cCCeEEEEEeCCCC---CCccccccCceeecccccCCHHHHhhcCCCccEEEEec
Q 007482 9 KTTQALFYNYKQL---PIQRMLD--FDFLCVAGIINPGA---EGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFS 80 (602)
Q Consensus 9 p~s~avv~g~~~~---~~~~~~~--~g~~~V~gv~~p~~---~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~v 80 (602)
+..++|+ |++|| .+.+++. .++++++++..++. +.+.+++.|.+..|+|+.+++..... ++|++|-++
T Consensus 2 ~iki~V~-Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~---~~DV~IDFT 77 (266)
T COG0289 2 MIKVAVA-GASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKA---DADVLIDFT 77 (266)
T ss_pred CceEEEE-cCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhccc---CCCEEEECC
Confidence 3456666 66666 3333333 56788888876532 22556777778899999999665432 589999999
Q ss_pred CChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCe-eEcCCc-ccc
Q 007482 81 SFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV-VIGPAT-VGG 135 (602)
Q Consensus 81 p~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~r-iiGPNc-~G~ 135 (602)
.|. .....++.|.+.|++ .||=|+||.+++.++|.+++++ +. |+-||. +|+
T Consensus 78 ~P~-~~~~~l~~~~~~~~~-lVIGTTGf~~e~~~~l~~~a~~--v~vv~a~NfSiGv 130 (266)
T COG0289 78 TPE-ATLENLEFALEHGKP-LVIGTTGFTEEQLEKLREAAEK--VPVVIAPNFSLGV 130 (266)
T ss_pred Cch-hhHHHHHHHHHcCCC-eEEECCCCCHHHHHHHHHHHhh--CCEEEeccchHHH
Confidence 886 467788999988866 6667999999999999999988 43 677774 454
No 58
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=97.68 E-value=0.009 Score=66.36 Aligned_cols=209 Identities=14% Similarity=0.122 Sum_probs=124.7
Q ss_pred CHHHHhh---cCCCccEEEEecCChh---hHHHHHHHhhCCCCcEEEEecCCCCHHH--------------HHHHHHHHH
Q 007482 62 TVEAACA---AHPMADVFINFSSFRS---AAASSMAALKQPTIRVVAIIAEGVPEAD--------------TKQLIAYAR 121 (602)
Q Consensus 62 sv~~i~~---~~p~vDlavi~vp~~~---~~~~~~e~~~~~gv~~~viis~Gf~E~~--------------~~~l~~~a~ 121 (602)
+..|+++ +.|+...+++++..-. ..-.+.+.+. ++ |-+|++-+|-.+.- .+-.....|
T Consensus 190 ~~~d~l~~l~~D~~t~~I~ly~E~~~~~~~f~~aa~~a~-~~-KPVv~~k~Grs~~g~~aa~sHtgalag~~~~~~a~~~ 267 (447)
T TIGR02717 190 DESDLLEYLADDPDTKVILLYLEGIKDGRKFLKTAREIS-KK-KPIVVLKSGTSEAGAKAASSHTGALAGSDEAYDAAFK 267 (447)
T ss_pred CHHHHHHHHhhCCCCCEEEEEecCCCCHHHHHHHHHHHc-CC-CCEEEEecCCChhhhhhhhhccccccChHHHHHHHHH
Confidence 4455543 2346788888876421 1234444444 34 55666666766541 122334557
Q ss_pred hCCCeeEcCCcccccccCcccccccCCcccccccccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeE-----------
Q 007482 122 SNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYE----------- 190 (602)
Q Consensus 122 ~~g~riiGPNc~G~~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~----------- 190 (602)
++|+..+ -+.--+++.. ..|.. .| .++-.+|++||-||+.+..+.|.+.+.|+-+-.
T Consensus 268 ~~Gv~~~-~~~~el~~~~--------~~l~~-~~--~~~g~rvaivs~sGG~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~ 335 (447)
T TIGR02717 268 QAGVIRA-DSIEELFDLA--------RLLSN-QP--LPKGNRVAIITNAGGPGVIATDACEENGLELAELSEATKNKLRN 335 (447)
T ss_pred HCCeEEe-CCHHHHHHHH--------HHHhc-CC--CCCCCeEEEEECCchHHHHHHHHHHHcCCCcCCCCHHHHHHHHH
Confidence 7776433 1111111111 11111 11 234568999999999999999999999987652
Q ss_pred ----EeeccCCCCCCC-------CHHHHHHHhhcCCCccEEEEEEec-CCCcHHHHHHHHHhcC---CCCCEEEEEeCcC
Q 007482 191 ----GIAIGGDVFPGS-------TLSDHILRFNNIPQVKMMVVLGEL-GGRDEYSLVEALKQGK---VNKPVVAWVSGTC 255 (602)
Q Consensus 191 ----~vs~Gn~~~~dv-------~~~d~l~~l~~Dp~t~~I~ly~E~-g~~~~~~f~~~~r~~~---~~KPVv~~k~Gr~ 255 (602)
.++.+|-. |+ .+.+.++.+.+||++++|++.+=+ +..+.....+.+.++. .+|||++.-.|-.
T Consensus 336 ~lp~~~~~~NPl--Dl~~~~~~~~~~~al~~l~~dp~vd~Vlv~~~~~~~~~~~~~a~~l~~~~~~~~~KPvv~~~~gg~ 413 (447)
T TIGR02717 336 ILPPEASIKNPV--DVLGDATPERYAKALKTVAEDENVDGVVVVLTPTAMTDPEEVAKGIIEGAKKSNEKPVVAGFMGGK 413 (447)
T ss_pred hCccccccCCCE--ecCCCCCHHHHHHHHHHHHcCCCCCEEEEEccCCccCCHHHHHHHHHHHHHhcCCCcEEEEecCCc
Confidence 34566654 43 568899999999999999865431 2333344444443321 3899977654311
Q ss_pred ccCccccccccccCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHH
Q 007482 256 ARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETF 308 (602)
Q Consensus 256 ~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~ 308 (602)
. . ......|+++|+...+++++-......++
T Consensus 414 ~------------------~----~~~~~~L~~~Gip~f~~p~~A~~al~~~~ 444 (447)
T TIGR02717 414 S------------------V----DPAKRILEENGIPNYTFPERAVKALSALY 444 (447)
T ss_pred c------------------H----HHHHHHHHhCCCCccCCHHHHHHHHHHHH
Confidence 1 1 44557789999999999999777765544
No 59
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=97.52 E-value=0.00088 Score=72.92 Aligned_cols=123 Identities=15% Similarity=0.217 Sum_probs=92.5
Q ss_pred CCcEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHh
Q 007482 161 PGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQ 240 (602)
Q Consensus 161 ~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~ 240 (602)
.|+|++|+.+|+++...+|.+...|+.....+.+|... ..-.+.+.|+.+.+||++++|++.+=.+......+++.+.+
T Consensus 256 ~~~i~ii~ng~G~~~~~~D~l~~~g~~~~NPvDl~g~~-~~e~~~~aL~~l~~d~~vd~vlv~~~~~~~~~~~va~~i~~ 334 (388)
T PRK00696 256 DGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGA-TAERVAEAFKIILSDPNVKAILVNIFGGITRCDVIAEGIIA 334 (388)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCCcCCeEEecCCC-CHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 69999999999999999999999999888888876663 35667899999999999999997654234444555555443
Q ss_pred c----CCCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHHHHHHHcC--CcccCCHHHHHHHHHHH
Q 007482 241 G----KVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAG--AVVPTSYEAFESAIKET 307 (602)
Q Consensus 241 ~----~~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaG--vi~v~~~~el~~~~~~~ 307 (602)
+ ..+|||++.-.| ... +.....|+++| +...+++++....+..+
T Consensus 335 ~~~~~~~~kPvv~~~~g-~~~----------------------~~~~~~L~~~Gi~ip~f~~pe~A~~al~~~ 384 (388)
T PRK00696 335 AVKEVGVTVPLVVRLEG-TNV----------------------ELGKKILAESGLNIIAADTLDDAAQKAVEA 384 (388)
T ss_pred HHHhcCCCCcEEEEeCC-CCH----------------------HHHHHHHHHCCCCceecCCHHHHHHHHHHH
Confidence 2 247999776545 111 44567799999 88999999977666544
No 60
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.50 E-value=0.00064 Score=69.88 Aligned_cols=116 Identities=22% Similarity=0.193 Sum_probs=77.4
Q ss_pred CCcEEEEe--eCCcH-HHHHHHh-cCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChh
Q 007482 9 KTTQALFY--NYKQL-PIQRMLD-FDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRS 84 (602)
Q Consensus 9 p~s~avv~--g~~~~-~~~~~~~-~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~ 84 (602)
|..++|+| |..|+ +++.+.+ .++++++.+...+... ... +..|++.|.+++++.. ++|++|.++|+..
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~--~~~---~~~~i~~~~dl~~ll~---~~DvVid~t~p~~ 72 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPL--VGQ---GALGVAITDDLEAVLA---DADVLIDFTTPEA 72 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc--ccc---CCCCccccCCHHHhcc---CCCEEEECCCHHH
Confidence 45788885 33344 5555554 4688887776222211 111 3357889999999764 4799999998875
Q ss_pred hHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCc-ccc
Q 007482 85 AAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPAT-VGG 135 (602)
Q Consensus 85 ~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc-~G~ 135 (602)
..+.++.|.++|++.++ -+.||.+++.++|.+.+++.+ .++-||+ +|+
T Consensus 73 -~~~~~~~al~~G~~vvi-gttG~s~~~~~~l~~aa~~~~-v~~s~n~s~g~ 121 (257)
T PRK00048 73 -TLENLEFALEHGKPLVI-GTTGFTEEQLAELEEAAKKIP-VVIAPNFSIGV 121 (257)
T ss_pred -HHHHHHHHHHcCCCEEE-ECCCCCHHHHHHHHHHhcCCC-EEEECcchHHH
Confidence 56777778779988664 488999999899998553333 4666665 344
No 61
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=97.48 E-value=0.0011 Score=72.23 Aligned_cols=122 Identities=18% Similarity=0.211 Sum_probs=93.3
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHH
Q 007482 160 RPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALK 239 (602)
Q Consensus 160 ~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r 239 (602)
..|+|++++.+|+++...++.+...|......+.+|+.+ ..-.+.+.++-+.+||++++|++++-.|+.+...+++.+.
T Consensus 255 l~G~i~~i~nG~Gl~~~t~D~~~~~g~~~aNplDlgg~a-~~~~~~~al~~l~~dp~vd~ilv~i~gg~~~~~~va~~i~ 333 (386)
T TIGR01016 255 LDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGA-SAERVREALKLVLSDKSVKVVFINIFGGITRCDLVAKGLV 333 (386)
T ss_pred cCCcEEEEECCccHHHHHHHHHHHcCCCCCCcEEecCCC-CHHHHHHHHHHHHcCCCCCEEEEECCCCCCCHHHHHHHHH
Confidence 589999999999999999999999999888999987764 2456789999999999999999876634455455555543
Q ss_pred hc----CCCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHHHHHHHcC--CcccCCHHHHHHHHH
Q 007482 240 QG----KVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAG--AVVPTSYEAFESAIK 305 (602)
Q Consensus 240 ~~----~~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaG--vi~v~~~~el~~~~~ 305 (602)
++ ..+|||++.-.|... ......|+++| +...+++++....+-
T Consensus 334 ~a~~~~~~~kPvvv~~~g~~~-----------------------~~~~~~L~~~G~~ip~~~~~~~Av~~~~ 382 (386)
T TIGR01016 334 EALKEVGVNVPVVVRLEGTNV-----------------------EEGKKILAESGLNIIFATSMEEAAEKAV 382 (386)
T ss_pred HHHHhcCCCCcEEEEeCCccH-----------------------HHHHHHHHHcCCCccccCCHHHHHHHHH
Confidence 32 234999776655221 34457799999 999999988665543
No 62
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.27 E-value=0.00072 Score=60.39 Aligned_cols=110 Identities=20% Similarity=0.172 Sum_probs=71.2
Q ss_pred cEEEEee-CCcH-HHHHHHhc--CCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhH
Q 007482 11 TQALFYN-YKQL-PIQRMLDF--DFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAA 86 (602)
Q Consensus 11 s~avv~g-~~~~-~~~~~~~~--g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~ 86 (602)
++++||. ..++ .++.+.+. ++++++.++ +.... .+.+ .+-.|.++|.|+++++... ++|+++|++|.....
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d-~~~~~-~~~~--~~~~~~~~~~~~~~ll~~~-~~D~V~I~tp~~~h~ 76 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCD-PDPER-AEAF--AEKYGIPVYTDLEELLADE-DVDAVIIATPPSSHA 76 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEEC-SSHHH-HHHH--HHHTTSEEESSHHHHHHHT-TESEEEEESSGGGHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEe-CCHHH-HHHH--HHHhcccchhHHHHHHHhh-cCCEEEEecCCcchH
Confidence 4677752 2233 66666664 566665554 53211 1111 2456889999999998754 599999999998755
Q ss_pred HHHHHHhhCCCCcEEEEe-cCCCCHHHHHHHHHHHHhCCCee
Q 007482 87 ASSMAALKQPTIRVVAII-AEGVPEADTKQLIAYARSNNKVV 127 (602)
Q Consensus 87 ~~~~e~~~~~gv~~~vii-s~Gf~E~~~~~l~~~a~~~g~ri 127 (602)
+.+. .|.++|+ .+++= .-.....+.++|++.++++|..+
T Consensus 77 ~~~~-~~l~~g~-~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 77 EIAK-KALEAGK-HVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp HHHH-HHHHTTS-EEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred HHHH-HHHHcCC-EEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 5544 4555888 34432 12445568899999999999764
No 63
>PLN02775 Probable dihydrodipicolinate reductase
Probab=97.27 E-value=0.0034 Score=65.19 Aligned_cols=120 Identities=11% Similarity=0.107 Sum_probs=80.3
Q ss_pred CCCcEEEEeeCCcH----HHHHHHhcCCeEEEEEeCCCCCC-ccc-cccCceeeccccc--CCHHHHhhcC--CCcc-EE
Q 007482 8 SKTTQALFYNYKQL----PIQRMLDFDFLCVAGIINPGAEG-FQK-LFFGQEEIAIPVH--STVEAACAAH--PMAD-VF 76 (602)
Q Consensus 8 ~p~s~avv~g~~~~----~~~~~~~~g~~~V~gv~~p~~~~-~~~-~~~g~~v~G~~~y--~sv~~i~~~~--p~vD-la 76 (602)
.+..+++|-|+.|+ .++-..+.++++|+.+. ++..+ +.. ++.|. +++.| .++++++... ..+| ++
T Consensus 9 ~~~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~-~~~~~~~~~~~~~g~---~v~~~~~~dl~~~l~~~~~~~~~~Vv 84 (286)
T PLN02775 9 GSAIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSF-TGPAGVGVTVEVCGV---EVRLVGPSEREAVLSSVKAEYPNLIV 84 (286)
T ss_pred CCCCeEEEECCCChHHHHHHHHHhcCCCEEEEEec-cccccccccceeccc---eeeeecCccHHHHHHHhhccCCCEEE
Confidence 34446667787777 44444558899987665 64332 222 33331 78999 8999988432 0258 78
Q ss_pred EEecCChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCC-eeEcCCc-cccc
Q 007482 77 INFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNK-VVIGPAT-VGGI 136 (602)
Q Consensus 77 vi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~-riiGPNc-~G~~ 136 (602)
|-+..+. ++...++.|.+.|++ +||-|+||.+++ +.+++++.++ -++-||. +|+.
T Consensus 85 IDFT~P~-a~~~~~~~~~~~g~~-~VvGTTG~~~e~---l~~~~~~~~i~vv~apNfSiGv~ 141 (286)
T PLN02775 85 VDYTLPD-AVNDNAELYCKNGLP-FVMGTTGGDRDR---LLKDVEESGVYAVIAPQMGKQVV 141 (286)
T ss_pred EECCChH-HHHHHHHHHHHCCCC-EEEECCCCCHHH---HHHHHhcCCccEEEECcccHHHH
Confidence 8888775 578889999989987 555689998763 4455556666 4888885 4554
No 64
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=97.26 E-value=0.0025 Score=69.55 Aligned_cols=125 Identities=15% Similarity=0.206 Sum_probs=92.5
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHH
Q 007482 160 RPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALK 239 (602)
Q Consensus 160 ~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r 239 (602)
..|+|++++-.++++...+|.+...|......+.+|..+ ..-.+.+.++-+.+||++++|++.+-.++.+...+++.+.
T Consensus 255 l~G~ig~i~nGaGl~m~t~D~i~~~gg~paNPlDlgg~a-~~e~~~~aL~~ll~Dp~VdaVlv~i~ggi~~~~~vA~~Ii 333 (392)
T PRK14046 255 LDGDIGCIVNGAGLAMATMDMIKLAGGEPANFLDVGGGA-SPERVAKAFRLVLSDRNVKAILVNIFAGINRCDWVAEGVV 333 (392)
T ss_pred cCCcEEEEeCCccHHHHHHHHHHhcCCCCcCCEEecCCC-CHHHHHHHHHHHHcCCCCCEEEEEcCCCCCCHHHHHHHHH
Confidence 589999999999999999999999998888899987764 3566789999999999999999866534555555555544
Q ss_pred hc----CCCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHHHHHHHcC--CcccCCHHHHHHHHHHHH
Q 007482 240 QG----KVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAG--AVVPTSYEAFESAIKETF 308 (602)
Q Consensus 240 ~~----~~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaG--vi~v~~~~el~~~~~~~~ 308 (602)
++ ..+|||++.-.|... +.....|+++| +.+.+|++|....+-.+.
T Consensus 334 ~a~~~~~~~kPvvv~l~G~~~-----------------------e~~~~iL~~~Gipvf~~~~~~~a~~~~v~~~ 385 (392)
T PRK14046 334 QAAREVGIDVPLVVRLAGTNV-----------------------EEGRKILAESGLPIITADTLAEAAEKAVEAW 385 (392)
T ss_pred HHHHhcCCCCcEEEEcCCCCH-----------------------HHHHHHHHHcCCCeeecCCHHHHHHHHHHHH
Confidence 43 257899776544221 45567799999 456666666555554443
No 65
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.01 E-value=0.0028 Score=65.42 Aligned_cols=119 Identities=18% Similarity=0.177 Sum_probs=75.5
Q ss_pred CcEEEEe-eCCcH-HHHHHHhc-CCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhH
Q 007482 10 TTQALFY-NYKQL-PIQRMLDF-DFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAA 86 (602)
Q Consensus 10 ~s~avv~-g~~~~-~~~~~~~~-g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~ 86 (602)
..++|+| |..|+ +++++.+. +.++++.+.++...++.....+ .+.++|.+++++ .. ++|++|+|.|+.. .
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~---~~~~~~~d~~~l-~~--~~DvVve~t~~~~-~ 74 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALG---EAVRVVSSVDAL-PQ--RPDLVVECAGHAA-L 74 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhc---cCCeeeCCHHHh-cc--CCCEEEECCCHHH-H
Confidence 4678886 44444 66666664 5666655553322111111111 268899999987 42 5899999999875 4
Q ss_pred HHHHHHhhCCCCcEEEEecCC-CC-HHHHHHHHHHHHhCCCe-eEcCCccccc
Q 007482 87 ASSMAALKQPTIRVVAIIAEG-VP-EADTKQLIAYARSNNKV-VIGPATVGGI 136 (602)
Q Consensus 87 ~~~~e~~~~~gv~~~viis~G-f~-E~~~~~l~~~a~~~g~r-iiGPNc~G~~ 136 (602)
.+..+.|-++|+. +++.+.| +. +...++|.+.|+++|.+ .+-|.+.|.+
T Consensus 75 ~e~~~~aL~aGk~-Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~ 126 (265)
T PRK13303 75 KEHVVPILKAGID-CAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGGI 126 (265)
T ss_pred HHHHHHHHHcCCC-EEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCH
Confidence 4555556568865 5555655 55 44568899999999987 4555555554
No 66
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=96.96 E-value=0.0075 Score=62.33 Aligned_cols=113 Identities=12% Similarity=0.093 Sum_probs=77.4
Q ss_pred EEEeeCCcH----HHHHHHhcCCeEEEE-EeCCC-CCCccccccCceeecccc------cCCHHHHhhcCCCcc-EEEEe
Q 007482 13 ALFYNYKQL----PIQRMLDFDFLCVAG-IINPG-AEGFQKLFFGQEEIAIPV------HSTVEAACAAHPMAD-VFINF 79 (602)
Q Consensus 13 avv~g~~~~----~~~~~~~~g~~~V~g-v~~p~-~~~~~~~~~g~~v~G~~~------y~sv~~i~~~~p~vD-lavi~ 79 (602)
++|-|+.|+ .++...+-|+++|+. +. ++ .+.+..++.|. ++|+ |.+++++.... +| ++|-+
T Consensus 3 V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~-~~~~~~~~~~~~g~---~v~v~~~~~~~~~l~~~~~~~--~d~VvIDF 76 (275)
T TIGR02130 3 IMVNGCPGKMGKAVAEAADAAGLEIVPTSFG-GEEEAENEAEVAGK---EILLHGPSEREARIGEVFAKY--PELICIDY 76 (275)
T ss_pred EEEeCCCChHHHHHHHHHhcCCCEEEeeEcc-ccccccchhhhccc---ceeeeccccccccHHHHHhhc--CCEEEEEC
Confidence 455577766 445555578999876 54 42 22244445442 7888 99999987542 68 88888
Q ss_pred cCChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCC-eeEcCCc-cccc
Q 007482 80 SSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNK-VVIGPAT-VGGI 136 (602)
Q Consensus 80 vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~-riiGPNc-~G~~ 136 (602)
..|. ++...++.|.+.|++ +|+-|+||.+.+.++|.+ +.++ .++-||. +|+.
T Consensus 77 T~P~-~~~~n~~~~~~~gv~-~ViGTTG~~~~~~~~l~~---~~~i~~l~apNfSiGv~ 130 (275)
T TIGR02130 77 THPS-AVNDNAAFYGKHGIP-FVMGTTGGDREALAKLVA---DAKHPAVIAPNMAKQIV 130 (275)
T ss_pred CChH-HHHHHHHHHHHCCCC-EEEcCCCCCHHHHHHHHH---hcCCCEEEECcccHHHH
Confidence 8776 477788999989988 455688999887766644 3346 4888985 5554
No 67
>PRK12349 citrate synthase 3; Provisional
Probab=96.95 E-value=0.0023 Score=69.16 Aligned_cols=89 Identities=13% Similarity=0.087 Sum_probs=66.8
Q ss_pred HHHHHhhhcC--CCcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchheeeeecCC
Q 007482 347 IISTISDDRG--EEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAG 424 (602)
Q Consensus 347 i~t~I~~~~g--~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~r~~ast~ 424 (602)
..|+|+...| ..+.|||+|+.||+++. +|+++.|+||+|+.|++.+.+.++..| .+|+..|+.+....-.....
T Consensus 15 ~~S~IS~id~~~g~L~YRGydi~dLa~~~-sFeeva~LL~~G~LP~~~e~~~f~~~L---~~~~~~p~~v~~~l~~~p~~ 90 (369)
T PRK12349 15 AETKISFLDTVKGEIVIQGYDLIELSKTK-EYLDIVHLLLEEHLPNEDEKATLEKKL---KEEYAVPEGVFNILKALPKE 90 (369)
T ss_pred eeeeceeEeCCCCEEEECCccHHHHHccC-CHHHHHHHHHCCCCCCHHHHHHHHHHH---HhccCCCHHHHHHHHhCCCC
Confidence 3466777643 34889999999999998 999999999999989999999999987 58998877732221112224
Q ss_pred CChHHHHHHhhccCC
Q 007482 425 KDLVSSLVSGLLTIG 439 (602)
Q Consensus 425 ~~~~~av~agl~a~G 439 (602)
.++-..+.+++.+++
T Consensus 91 ~~pm~~l~~~vs~l~ 105 (369)
T PRK12349 91 THPMDGLRTGVSALA 105 (369)
T ss_pred CCHHHHHHHHHHHhc
Confidence 677777777777753
No 68
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=96.75 E-value=0.022 Score=62.66 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=97.3
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcH----HHHH
Q 007482 160 RPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDE----YSLV 235 (602)
Q Consensus 160 ~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~----~~f~ 235 (602)
..|+|+.+.--++++++.+|.+...|--...|..+|+.+. .-.+.+.++-+..||++|+|++-+=-|+.+- +.+.
T Consensus 290 ldG~Ig~~vnGaGlamaTmD~i~~~Gg~pANFlD~GG~a~-~~~v~~a~~ii~~d~~vk~iliNIfGGI~~cd~iA~gii 368 (422)
T PLN00124 290 LDGEIGCMVNGAGLAMATMDIIKLHGGSPANFLDVGGNAS-EQQVVEAFKILTSDDKVKAILVNIFGGIMKCDVIASGIV 368 (422)
T ss_pred CCCcEEEEecCchHHHHHHHHHHHcCCCcceeeecCCCCC-HHHHHHHHHHHhcCCCCcEEEEEecCCccchHHHHHHHH
Confidence 5899999999999999999999999999999999999872 5667889999999999999999666355543 4566
Q ss_pred HHHHhcCCCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHHHHHHHcC--CcccCCHHHHHHHH
Q 007482 236 EALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAG--AVVPTSYEAFESAI 304 (602)
Q Consensus 236 ~~~r~~~~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaG--vi~v~~~~el~~~~ 304 (602)
+++++...++|||+--.|.... .=...++++| ++.++|++|....+
T Consensus 369 ~a~~~~~~~~pivvRl~Gtn~~-----------------------~g~~~l~~~~~~~~~~~~l~~A~~~~ 416 (422)
T PLN00124 369 NAAKQVGLKVPLVVRLEGTNVD-----------------------QGKRILKESGMTLITAEDLDDAAEKA 416 (422)
T ss_pred HHHHhcCCCCcEEEEcCCCCHH-----------------------HHHHHHHhCCCCeEEcCCHHHHHHHH
Confidence 6677766789999987776664 2347889999 66777777755544
No 69
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=96.73 E-value=0.026 Score=60.32 Aligned_cols=168 Identities=16% Similarity=0.171 Sum_probs=125.0
Q ss_pred HHHHHHHHHhCCCeeEcCCcccccccC-c-----cc--ccccCCccccccccc---------------------C--CCC
Q 007482 113 TKQLIAYARSNNKVVIGPATVGGIQAG-A-----FK--IGDTAGTIDNIIHCK---------------------L--YRP 161 (602)
Q Consensus 113 ~~~l~~~a~~~g~riiGPNc~G~~~~~-~-----~~--l~~~~~~~~~~~p~~---------------------~--~~~ 161 (602)
..+|.+.-.+++..++==|-+.+...+ . .+ +.. |+.|- .|.. . -..
T Consensus 179 i~~Ly~~f~~~Da~lvEINPLvvt~~~g~v~aLDaKi~~Dd-nAlfR--Hp~~~~~~d~~~ed~~e~~a~~~~l~yV~Ld 255 (387)
T COG0045 179 IKKLYKLFVEKDATLVEINPLVVTPDGGDVLALDAKITLDD-NALFR--HPDLAELRDESEEDPREAEASGYGLNYVELD 255 (387)
T ss_pred HHHHHHHHHHcCCcEEEeeccEEeCCCCcEEEEeeeeeccC-ccccc--CcchhhhhcccccChhHHHhhhCCCceEEec
Confidence 355677778889988888888776533 1 11 111 23331 1100 0 146
Q ss_pred CcEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHH----HHHHH
Q 007482 162 GSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEY----SLVEA 237 (602)
Q Consensus 162 G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~----~f~~~ 237 (602)
|+|+.+...++++++.+|...-.|---..|..+|+.+. .-.+.+.++.+..||++|+|.+-+=-|+...+ ...++
T Consensus 256 G~IG~ivNGAGLaMaTmDii~~~Gg~PANFLDvGGgA~-~e~v~~a~~~il~d~~vk~IfVNIfGGI~rcD~vA~GIi~A 334 (387)
T COG0045 256 GNIGCIVNGAGLAMATMDIVKLYGGKPANFLDVGGGAT-AERVKEAFKLILSDPNVKAIFVNIFGGITRCDEVAEGIIAA 334 (387)
T ss_pred CcEEEEecChhHHHHHHHHHHHcCCCCcceeecCCCCC-HHHHHHHHHHHhcCCCccEEEEEEccCcCccHHHHHHHHHH
Confidence 99999999999999999999999999999999999874 34488999999999999999999985666544 45556
Q ss_pred HHhcCCCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHHHHHHHcC--CcccCCHHHHHHHHHHH
Q 007482 238 LKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAG--AVVPTSYEAFESAIKET 307 (602)
Q Consensus 238 ~r~~~~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaG--vi~v~~~~el~~~~~~~ 307 (602)
+++...++|+|+=-.|++.. .=..+++++| +..+++++|....+-.+
T Consensus 335 l~e~~~~vPlVVRL~GtN~e-----------------------~Gk~iL~esg~~i~~~~~l~~aa~k~v~~ 383 (387)
T COG0045 335 LKEVGVNVPLVVRLEGTNVE-----------------------EGKRILAESGLNIIAADDLDEAAEKAVEL 383 (387)
T ss_pred HHhcCCCCCEEEEcCCCCHH-----------------------HHHHHHHHcCCceEecccHHHHHHHHHHH
Confidence 77766789999998887764 3447899999 88888888877665443
No 70
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=96.63 E-value=0.0053 Score=63.42 Aligned_cols=112 Identities=12% Similarity=0.035 Sum_probs=71.6
Q ss_pred CcEEEEe-eCCcH-HHHHHHhc--CCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhh
Q 007482 10 TTQALFY-NYKQL-PIQRMLDF--DFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSA 85 (602)
Q Consensus 10 ~s~avv~-g~~~~-~~~~~~~~--g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~ 85 (602)
+.++||| |..|+ +.+.+.+. ++++++.++ +... +.+.+ .+-.|.+.|.+++++++ ++|++++++|+..
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d-~~~~-~a~~~--a~~~~~~~~~~~~ell~---~~DvVvi~a~~~~- 73 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYD-RNLE-KAENL--ASKTGAKACLSIDELVE---DVDLVVECASVNA- 73 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEEC-CCHH-HHHHH--HHhcCCeeECCHHHHhc---CCCEEEEcCChHH-
Confidence 4678886 33344 66666664 466665554 4221 11111 12346788999999863 5899999999875
Q ss_pred HHHHHHHhhCCCCcEEEEecCC-C-CHHHHHHHHHHHHhCCCeeEcC
Q 007482 86 AASSMAALKQPTIRVVAIIAEG-V-PEADTKQLIAYARSNNKVVIGP 130 (602)
Q Consensus 86 ~~~~~e~~~~~gv~~~viis~G-f-~E~~~~~l~~~a~~~g~riiGP 130 (602)
..+..+.+.++|.. +++++.| + .+...++|.+.|+++|.++.=|
T Consensus 74 ~~~~~~~al~~Gk~-Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~ 119 (265)
T PRK13304 74 VEEVVPKSLENGKD-VIIMSVGALADKELFLKLYKLAKENNCKIYLP 119 (265)
T ss_pred HHHHHHHHHHcCCC-EEEEchHHhcCHHHHHHHHHHHHHcCCEEEEe
Confidence 45555555557754 5666655 3 4456789999999999886533
No 71
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=96.59 E-value=0.0068 Score=65.35 Aligned_cols=87 Identities=15% Similarity=0.156 Sum_probs=65.6
Q ss_pred HHHHHhhhcCC--CcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchheeeeec--
Q 007482 347 IISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTAR-- 422 (602)
Q Consensus 347 i~t~I~~~~g~--~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~r~~as-- 422 (602)
..|+|+...++ .+.|||+|+.||+++. +|+++.|+||+|+.|++.+.+.++..| .+|+..|+.+ ..+..+
T Consensus 9 ~~s~is~id~~~g~l~YRG~~i~dL~~~~-~feeva~LL~~G~lP~~~el~~f~~~L---~~~~~~p~~v--~~~~~~~p 82 (358)
T cd06118 9 KETSISYIDGDEGILRYRGYDIEELAEKS-SFEEVAYLLLYGKLPTKEELAEFKKKL---ASHRALPEHV--VEILDLLP 82 (358)
T ss_pred eeeeeeEEeCCCCeEEECCccHHHHHhcC-CHHHHHHHHHcCCCCCHHHHHHHHHHH---HHccCCCHHH--HHHHHhcC
Confidence 44666765554 5899999999999998 999999999998888888888899877 6788876652 222222
Q ss_pred CCCChHHHHHHhhccCC
Q 007482 423 AGKDLVSSLVSGLLTIG 439 (602)
Q Consensus 423 t~~~~~~av~agl~a~G 439 (602)
...++-..+.+++++++
T Consensus 83 ~~~~pm~~l~~~~~~l~ 99 (358)
T cd06118 83 KNAHPMDVLRTAVSALG 99 (358)
T ss_pred CCCChHHHHHHHHHhhh
Confidence 34677777777777753
No 72
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=96.59 E-value=0.0066 Score=62.92 Aligned_cols=120 Identities=12% Similarity=0.080 Sum_probs=75.9
Q ss_pred CCCCcEEEEe-eCCcH-HHHHHHh--cCCeEEEEEeCCCCCCccccccCceeec-ccccCCHHHHhhcCCCccEEEEecC
Q 007482 7 FSKTTQALFY-NYKQL-PIQRMLD--FDFLCVAGIINPGAEGFQKLFFGQEEIA-IPVHSTVEAACAAHPMADVFINFSS 81 (602)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~~~~--~g~~~V~gv~~p~~~~~~~~~~g~~v~G-~~~y~sv~~i~~~~p~vDlavi~vp 81 (602)
..+.+++||| |..|+ +.+++.+ .++++++..+ +... +.+.+ .+-.| .+.|.+++|+.. ++|++++++|
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~d-r~~~-~a~~~--a~~~g~~~~~~~~eell~---~~D~Vvi~tp 76 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAV-RDPQ-RHADF--IWGLRRPPPVVPLDQLAT---HADIVVEAAP 76 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEEC-CCHH-HHHHH--HHhcCCCcccCCHHHHhc---CCCEEEECCC
Confidence 3567899996 44444 7777775 3677653333 3221 11111 11223 468899999864 4799999999
Q ss_pred ChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCee-EcCCccccc
Q 007482 82 FRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVV-IGPATVGGI 136 (602)
Q Consensus 82 ~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~ri-iGPNc~G~~ 136 (602)
... ..+..+.+-++|.. +++.+.|= -.+.++|.+.|+++|.++ ++|..++-+
T Consensus 77 ~~~-h~e~~~~aL~aGk~-Vi~~s~ga-l~~~~~L~~~A~~~g~~l~v~sGa~~g~ 129 (271)
T PRK13302 77 ASV-LRAIVEPVLAAGKK-AIVLSVGA-LLRNEDLIDLARQNGGQIIVPTGALLGL 129 (271)
T ss_pred cHH-HHHHHHHHHHcCCc-EEEecchh-HHhHHHHHHHHHHcCCEEEEcchHHHhH
Confidence 875 55555666667864 55555441 125689999999999986 776665443
No 73
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.43 E-value=0.0057 Score=58.32 Aligned_cols=111 Identities=11% Similarity=0.021 Sum_probs=73.6
Q ss_pred CcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhHH
Q 007482 10 TTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAA 87 (602)
Q Consensus 10 ~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~ 87 (602)
++|++|| |..|+ +.++|++.||++. ..+ .... +.+.+. -.|.....|.+|+.+. .|++++++|....+.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~-~~d-~~~~-~~~~~~---~~g~~~~~s~~e~~~~---~dvvi~~v~~~~~v~ 72 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVT-VYD-RSPE-KAEALA---EAGAEVADSPAEAAEQ---ADVVILCVPDDDAVE 72 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEE-EEE-SSHH-HHHHHH---HTTEEEESSHHHHHHH---BSEEEE-SSSHHHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEE-eec-cchh-hhhhhH---HhhhhhhhhhhhHhhc---ccceEeecccchhhh
Confidence 4678886 44444 8999999999862 333 3211 111111 1368899999998764 699999999977788
Q ss_pred HHHHH---hhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEc
Q 007482 88 SSMAA---LKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIG 129 (602)
Q Consensus 88 ~~~e~---~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiG 129 (602)
++++. +....-..++|-.+-.+.+..+++.+.++++|++++-
T Consensus 73 ~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vd 117 (163)
T PF03446_consen 73 AVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVD 117 (163)
T ss_dssp HHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEE
T ss_pred hhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeee
Confidence 88886 4434456677777777777788888999999987553
No 74
>PRK14037 citrate synthase; Provisional
Probab=96.43 E-value=0.007 Score=65.60 Aligned_cols=87 Identities=10% Similarity=0.064 Sum_probs=61.9
Q ss_pred HHHHHhhhcCC--CcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchheeeeecC-
Q 007482 347 IISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARA- 423 (602)
Q Consensus 347 i~t~I~~~~g~--~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~r~~ast- 423 (602)
..|+|+...++ .+.|||+++.||+++. +|++++|+||+|+.|++.+.+.|+..|..+ ..-+.. ...+..+-
T Consensus 14 ~~t~is~id~~~g~L~yRGy~i~dL~~~~-~Feev~~LLl~G~lP~~~e~~~f~~~L~~~---~~lp~~--v~~~~~~~p 87 (377)
T PRK14037 14 KVTNLTFIDGEKGILRYRGYNIEDLVNYG-SYEETIYLMLYGELPTKKELNDLKEKLNEE---YEVPQE--VIDSIYLMP 87 (377)
T ss_pred eeeeceEEeCCCCEEEECCccHHHHHccC-CHHHHHHHHHcCCCCCHHHHHHHHHHHHHh---cCCCHH--HHHHHHhCC
Confidence 34567775543 3779999999999998 999999999999999999999999988544 222222 11122222
Q ss_pred -CCChHHHHHHhhccCC
Q 007482 424 -GKDLVSSLVSGLLTIG 439 (602)
Q Consensus 424 -~~~~~~av~agl~a~G 439 (602)
..++-..+.+++++++
T Consensus 88 ~~~hpm~~l~~~vs~l~ 104 (377)
T PRK14037 88 RDSDAIGLMEAAFAALA 104 (377)
T ss_pred ccCCcHHHHHHHHHhhh
Confidence 2467777777777765
No 75
>PRK14036 citrate synthase; Provisional
Probab=96.42 E-value=0.0084 Score=64.99 Aligned_cols=87 Identities=16% Similarity=0.110 Sum_probs=63.8
Q ss_pred HHHHHhhhcCCC--cccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchheeeeec--
Q 007482 347 IISTISDDRGEE--PCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTAR-- 422 (602)
Q Consensus 347 i~t~I~~~~g~~--i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~r~~as-- 422 (602)
..|+|+...|+. +.|||+++.||+++. +|++++|+||+|+.|++++.+.++..|. +|..-+.. ...+..+
T Consensus 14 ~~t~Is~idg~~G~L~yRGy~i~dL~~~~-~Feev~~LLl~G~lP~~~el~~f~~~L~---~~~~lp~~--v~~~i~~~p 87 (377)
T PRK14036 14 TQSSISYVDGQKGILEYRGYPIEELAEKS-SFLETAYLLIWGELPTAEELEEFEQEVR---MHRRVKYR--IRDMMKCFP 87 (377)
T ss_pred eeeeceEEECCCCEEEECCccHHHHHccC-CHHHHHHHHHcCCCCCHHHHHHHHHHHH---HccCCCHH--HHHHHHhCC
Confidence 346777776654 679999999999999 9999999999999999999999999874 44443333 2222222
Q ss_pred CCCChHHHHHHhhccCC
Q 007482 423 AGKDLVSSLVSGLLTIG 439 (602)
Q Consensus 423 t~~~~~~av~agl~a~G 439 (602)
...++-..+.+++++++
T Consensus 88 ~~~hpm~~L~~~vs~l~ 104 (377)
T PRK14036 88 ETGHPMDALQASAAALG 104 (377)
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 23567777777777764
No 76
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=96.41 E-value=0.0073 Score=65.42 Aligned_cols=89 Identities=13% Similarity=0.047 Sum_probs=64.1
Q ss_pred HHHHhhhcCCC--cccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchheeeeecCCC
Q 007482 348 ISTISDDRGEE--PCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGK 425 (602)
Q Consensus 348 ~t~I~~~~g~~--i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~r~~ast~~ 425 (602)
.|+||...|+. +.|||+++.||+++. +|++++|+||+|+.|++.+.+.++..|.-. ..-+..+....-.-....
T Consensus 12 ~t~is~id~~~G~L~yRGy~i~dL~~~~-~Feev~~LLl~G~lP~~~el~~~~~~L~~~---~~lp~~v~~~i~~~p~~~ 87 (373)
T cd06112 12 ESSISYIDGKNGILEYRGYDIEELAEYS-SFEEVALLLLDGDLPTAAELEEFDKELRQH---RRVKYNIRDMMKCFPETG 87 (373)
T ss_pred eeeceEEeCCCCEEEECCccHHHHhcCC-CHHHHHHHHHcCCCCCHHHHHHHHHHHHHh---cCCCHHHHHHHHhCCCCC
Confidence 36777776554 679999999999998 999999999999999999999999988644 332332122111122235
Q ss_pred ChHHHHHHhhccCCC
Q 007482 426 DLVSSLVSGLLTIGP 440 (602)
Q Consensus 426 ~~~~av~agl~a~Gp 440 (602)
++-..+.+++.+++.
T Consensus 88 hpm~~L~~~vs~l~~ 102 (373)
T cd06112 88 HPMDMLQATVAALGM 102 (373)
T ss_pred CHHHHHHHHHHhhhc
Confidence 777788888877753
No 77
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II. Members of this family are dimeric enzymes with activity as 2-methylcitrate synthase, citrate synthase, or both. Many Gram-negative species have a hexameric citrate synthase, termed citrate synthase I (TIGR01798). Members of this family (TIGR01800) appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesize 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme.
Probab=96.26 E-value=0.011 Score=63.96 Aligned_cols=59 Identities=17% Similarity=0.157 Sum_probs=50.6
Q ss_pred HHHHHHHhhhcCCC--cccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHh
Q 007482 345 THIISTISDDRGEE--PCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLC 404 (602)
Q Consensus 345 ~~i~t~I~~~~g~~--i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~ 404 (602)
+...|+|+...++. +.|||+|+.||+++. +|++++|+||+|+.|++.+.+.++..|...
T Consensus 7 ~~~~t~Is~id~~~g~l~yRG~~i~dL~~~~-~feeva~LL~~G~lP~~~e~~~f~~~l~~~ 67 (368)
T TIGR01800 7 IADETALSTIDGSEGILTYRGYDIEDLAEHA-SFEEVAYLLLHGKLPTRSELRKFKTELAKL 67 (368)
T ss_pred eeeeeeceEEECCcceEEECCeeHHHHHhcC-CHHHHHHHHHcCCCCCHHHHHHHHHHHHhh
Confidence 34457888888887 789999999999998 999999999999989998989999877644
No 78
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=96.11 E-value=0.021 Score=60.33 Aligned_cols=116 Identities=18% Similarity=0.185 Sum_probs=75.9
Q ss_pred CCCcEEEEe-e-CCcH-HHHHHHhcC--CeEEEEEeCCCCCCccccccCceeecc-cccCCHHHHhhcCCCccEEEEecC
Q 007482 8 SKTTQALFY-N-YKQL-PIQRMLDFD--FLCVAGIINPGAEGFQKLFFGQEEIAI-PVHSTVEAACAAHPMADVFINFSS 81 (602)
Q Consensus 8 ~p~s~avv~-g-~~~~-~~~~~~~~g--~~~V~gv~~p~~~~~~~~~~g~~v~G~-~~y~sv~~i~~~~p~vDlavi~vp 81 (602)
.+..++||| | ..++ ++..+.+.+ +.+|+.+. +... +.+.+ .+-.|+ ++|.|.++++.. ++||+++|++|
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d-~~~~-~a~~~--a~~~~~~~~~~~~~~ll~~-~~iD~V~Iatp 76 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVD-RDPE-RAEAF--AEEFGIAKAYTDLEELLAD-PDIDAVYIATP 76 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEec-CCHH-HHHHH--HHHcCCCcccCCHHHHhcC-CCCCEEEEcCC
Confidence 356788897 4 4333 666676654 46665544 5221 11111 244566 499999999875 36999999999
Q ss_pred ChhhHHHHHHHhhCCCCcEEEEecC---CCCHHHHHHHHHHHHhCCCe-eEcCCc
Q 007482 82 FRSAAASSMAALKQPTIRVVAIIAE---GVPEADTKQLIAYARSNNKV-VIGPAT 132 (602)
Q Consensus 82 ~~~~~~~~~e~~~~~gv~~~viis~---Gf~E~~~~~l~~~a~~~g~r-iiGPNc 132 (602)
...-.+-+++++. +|.. + +.+ ....++-++|+++|+++|+. .+|-|.
T Consensus 77 ~~~H~e~~~~AL~-aGkh-V--l~EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~ 127 (342)
T COG0673 77 NALHAELALAALE-AGKH-V--LCEKPLALTLEEAEELVELARKAGVKLMVGFNR 127 (342)
T ss_pred ChhhHHHHHHHHh-cCCE-E--EEcCCCCCCHHHHHHHHHHHHHcCCceeeehhh
Confidence 9887777777776 7774 3 333 22333667999999999875 566653
No 79
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate though it has partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate and prefer PrCoA as substrate, but can also use AcCoA. Re 2-MCS1 can use butyryl-CoA and valeryl-CoA at a lower rate. A second Ralstonia eutropha 2MC
Probab=96.08 E-value=0.017 Score=62.25 Aligned_cols=105 Identities=14% Similarity=0.158 Sum_probs=66.2
Q ss_pred HHHHhhhcCC--CcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchheeeeecCCC
Q 007482 348 ISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGK 425 (602)
Q Consensus 348 ~t~I~~~~g~--~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~r~~ast~~ 425 (602)
.|+||...|+ .+.|||+++.||..+. +|+++.|+||+|+.|++++.+-++.-|.-+ ..-+..+.-.--.-...+
T Consensus 10 ~t~is~id~~~g~L~yRGy~i~dLa~~~-sfeeva~LLl~G~lPt~~el~~f~~~L~~~---~~lp~~v~~~i~~~p~~~ 85 (363)
T cd06108 10 QTAISTVGKGGKGLTYRGYDIEDLAENA-TFEEVAYLLLYGKLPTRKQLDAYKTKLVAL---RRLPAALKTVLELIPKDS 85 (363)
T ss_pred eeeCceEeCCCCEEEECCccHHHHHhcC-CHHHHHHHHHcCCCCCHHHHHHHHHHHHHh---cCCCHHHHHHHHhCCCCC
Confidence 3566776555 4889999999999988 999999999999999888888888877433 332222111111112235
Q ss_pred ChHHHHHHhhccCC---CC--CcChHHHHHHHHHHH
Q 007482 426 DLVSSLVSGLLTIG---PR--FGGAIDDAARYFKDA 456 (602)
Q Consensus 426 ~~~~av~agl~a~G---p~--hgGa~~~a~~~l~~~ 456 (602)
++-..+.+++.+++ |. .-...+.+.+++..+
T Consensus 86 hpm~~L~~~vs~l~~~d~~~~~~~~~~~a~rlia~~ 121 (363)
T cd06108 86 HPMDVMRTGCSMLGCLEPENEFSQQYEIAIRLLAIF 121 (363)
T ss_pred ChHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHHH
Confidence 66667777776653 21 112234555655543
No 80
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-II, the major CS of the gram-positive bacterium Bacillus subtilis. A mutation in the gene which encodes BsCS-II (citZ gene) has been described which resulted in a significant loss of CS activity, partial glutamate auxotrophy, and a sporulation deficiency, a
Probab=96.04 E-value=0.016 Score=62.56 Aligned_cols=87 Identities=14% Similarity=0.095 Sum_probs=61.9
Q ss_pred HHHHHHhhhcCCC--cccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchheeeeec-
Q 007482 346 HIISTISDDRGEE--PCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTAR- 422 (602)
Q Consensus 346 ~i~t~I~~~~g~~--i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~r~~as- 422 (602)
...|+|+...++. +.|||+|+.||+++. +|++++|+||+|+.|++.+.+.++..|. .|..-+.. ...+..+
T Consensus 8 ~~~T~IS~id~~~g~L~yRG~di~dL~~~~-~feeva~LL~~G~lP~~~e~~~f~~~l~---~~~~~p~~--v~~~~~~~ 81 (356)
T cd06110 8 AADSKISYIDGDAGILIYRGYDIHDLAENS-TFEEVAYLLWNGELPTAEELDAFKAQLA---AERELPAE--IIDLLKLL 81 (356)
T ss_pred eeeeeceEEECCCCeEEECCeeHHHHHhcC-CHHHHHHHHHcCcCCCHHHHHHHHHhhh---hccCCCHH--HHHHHHhC
Confidence 3457788877776 579999999999998 9999999999999899989999999873 34433333 1112222
Q ss_pred -CCCChHHHHHHhhccC
Q 007482 423 -AGKDLVSSLVSGLLTI 438 (602)
Q Consensus 423 -t~~~~~~av~agl~a~ 438 (602)
...++-..+.++++++
T Consensus 82 p~~~~pm~~l~~~v~~l 98 (356)
T cd06110 82 PKDAHPMDVLRTAVSAL 98 (356)
T ss_pred CCCCCchHHHHHHHHhh
Confidence 2456666666666554
No 81
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. DsCS, compared with CS from the hyperthermophile Pyrococcus furiosus (not included in this group), has an increase in the size of surface loops, a higher proline content in the loop regions, a more accessible active site, and a highe
Probab=96.02 E-value=0.017 Score=62.33 Aligned_cols=86 Identities=16% Similarity=0.113 Sum_probs=60.7
Q ss_pred HHHHhhhcCC--CcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchheeeee--cC
Q 007482 348 ISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTA--RA 423 (602)
Q Consensus 348 ~t~I~~~~g~--~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~r~~a--st 423 (602)
.|+|+...++ .+.|||+|+.||+++. +|++++|+||+|+.|++.+.+.++.-| .+|+.-|..+ . .+.. ..
T Consensus 10 ~s~Is~i~~~~g~L~yRG~di~dLa~~~-~feeva~LL~~G~lP~~~e~~~f~~~l---~~~~~lp~~~-~-~~~~~~p~ 83 (362)
T cd06111 10 TTAISKVMPETNSLTYRGYPVQDLAENC-SFEEVAYLLWNGELPNAAQLAEFSQRE---RSYRRLDRNL-L-SLIASLPK 83 (362)
T ss_pred cccceEEECCCCeEEECCccHHHHHccC-CHHHHHHHHHCCCCCCHHHHHHHHHHH---HHccCCCHHH-H-HHHHhCCC
Confidence 3567776664 4689999999999998 999999999999889888888888866 4445444441 1 1222 23
Q ss_pred CCChHHHHHHhhccCC
Q 007482 424 GKDLVSSLVSGLLTIG 439 (602)
Q Consensus 424 ~~~~~~av~agl~a~G 439 (602)
..++-..+.+++.+++
T Consensus 84 ~~~pm~~l~~~vs~l~ 99 (362)
T cd06111 84 NCHPMDVLRTAVSVLG 99 (362)
T ss_pred CCChHHHHHHHHHHhh
Confidence 3566666666666653
No 82
>PRK11579 putative oxidoreductase; Provisional
Probab=95.97 E-value=0.047 Score=58.41 Aligned_cols=114 Identities=18% Similarity=0.087 Sum_probs=72.1
Q ss_pred CCcEEEEe-eCCcH--HHHHHHh-cCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChh
Q 007482 9 KTTQALFY-NYKQL--PIQRMLD-FDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRS 84 (602)
Q Consensus 9 p~s~avv~-g~~~~--~~~~~~~-~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~ 84 (602)
+-.++||| |..++ ++..+.. -++++++.++ +.... .+ ....+.++|.+++|++.. +++|+++|++|...
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d-~~~~~-~~----~~~~~~~~~~~~~ell~~-~~vD~V~I~tp~~~ 76 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSS-SDATK-VK----ADWPTVTVVSEPQHLFND-PNIDLIVIPTPNDT 76 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEEC-CCHHH-HH----hhCCCCceeCCHHHHhcC-CCCCEEEEcCCcHH
Confidence 35788886 33232 4455544 3677765554 43211 11 123357899999999864 46999999999987
Q ss_pred hHHHHHHHhhCCCCcEEEEe-cCCCCHHHHHHHHHHHHhCCCee-EcCC
Q 007482 85 AAASSMAALKQPTIRVVAII-AEGVPEADTKQLIAYARSNNKVV-IGPA 131 (602)
Q Consensus 85 ~~~~~~e~~~~~gv~~~vii-s~Gf~E~~~~~l~~~a~~~g~ri-iGPN 131 (602)
-.+.+++++. +|.. +++= .-....++.++|++.|+++|+.+ +|.|
T Consensus 77 H~~~~~~al~-aGkh-Vl~EKPla~t~~ea~~l~~~a~~~g~~l~v~~~ 123 (346)
T PRK11579 77 HFPLAKAALE-AGKH-VVVDKPFTVTLSQARELDALAKSAGRVLSVFHN 123 (346)
T ss_pred HHHHHHHHHH-CCCe-EEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEee
Confidence 6666666665 7754 4441 11334446789999999999874 4443
No 83
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=95.93 E-value=0.028 Score=60.26 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=69.3
Q ss_pred CCCcEEEEee-CCcHHHHHHHhc--CCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCC--
Q 007482 8 SKTTQALFYN-YKQLPIQRMLDF--DFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSF-- 82 (602)
Q Consensus 8 ~p~s~avv~g-~~~~~~~~~~~~--g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~-- 82 (602)
.|..++|||. ++..+++.+.+. ++++|+.++ +... +.+.+ .+-.|+|.|.|++|++. ++|+++|++|.
T Consensus 2 ~~~rVgViG~~~G~~h~~al~~~~~~~eLvaV~d-~~~e-rA~~~--A~~~gi~~y~~~eell~---d~Di~~V~ipt~~ 74 (343)
T TIGR01761 2 DVQSVVVCGTRFGQFYLAAFAAAPERFELAGILA-QGSE-RSRAL--AHRLGVPLYCEVEELPD---DIDIACVVVRSAI 74 (343)
T ss_pred CCcEEEEEeHHHHHHHHHHHHhCCCCcEEEEEEc-CCHH-HHHHH--HHHhCCCccCCHHHHhc---CCCEEEEEeCCCC
Confidence 3567888874 433366666663 588876665 5221 11122 23467899999999875 36777777643
Q ss_pred --hhhHHHHHHHhhCCCCcEEEEecCC-CCHHHHHHHHHHHHhCCCeeE
Q 007482 83 --RSAAASSMAALKQPTIRVVAIIAEG-VPEADTKQLIAYARSNNKVVI 128 (602)
Q Consensus 83 --~~~~~~~~e~~~~~gv~~~viis~G-f~E~~~~~l~~~a~~~g~rii 128 (602)
..-.+.+++++ ++|+. ++ .+- +..++.++|++.|+++|+.+.
T Consensus 75 P~~~H~e~a~~aL-~aGkH-VL--~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 75 VGGQGSALARALL-ARGIH-VL--QEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred CCccHHHHHHHHH-hCCCe-EE--EcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 23345555555 47864 33 332 334577899999999999866
No 84
>PRK12351 methylcitrate synthase; Provisional
Probab=95.91 E-value=0.026 Score=61.20 Aligned_cols=87 Identities=10% Similarity=0.071 Sum_probs=63.6
Q ss_pred HHHHhhhcCC--CcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchheeeeecC--
Q 007482 348 ISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARA-- 423 (602)
Q Consensus 348 ~t~I~~~~g~--~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~r~~ast-- 423 (602)
-|+||...++ .+.|||+++.||..+. +|+++.|+||+|+.|++.+.+.|+.-|. .|..-+-. ...+..+-
T Consensus 19 ~T~is~i~~~~g~L~YRGy~I~dLa~~~-~feeva~LL~~G~LP~~~el~~f~~~L~---~~~~lp~~--v~~~i~~~p~ 92 (378)
T PRK12351 19 NTALCTVGKSGNDLHYRGYDILDLAEHC-EFEEVAHLLVHGKLPTQAELAAYKTKLK---ALRGLPAA--VKTVLEAIPA 92 (378)
T ss_pred cccCeeEecCCCEEEECCccHHHHHhcC-CHHHHHHHHHCCCCCCHHHHHHHHHHHH---HhCCCCHH--HHHHHHhCCc
Confidence 4677776554 4789999999999988 9999999999999998888888888774 34443333 12233333
Q ss_pred CCChHHHHHHhhccCCC
Q 007482 424 GKDLVSSLVSGLLTIGP 440 (602)
Q Consensus 424 ~~~~~~av~agl~a~Gp 440 (602)
.++|-..+.+++++++.
T Consensus 93 ~~hPM~~L~~~vs~l~~ 109 (378)
T PRK12351 93 AAHPMDVMRTGVSVLGC 109 (378)
T ss_pred cCCHHHHHHHHHHhhcc
Confidence 35788888888887753
No 85
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains three Arabidopsis peroxisomal CS proteins, CYS1, -2, and -3 which are involved in the glyoxylate cycle. AthCYS1, in addition to a peroxisomal targeting sequence, has a predicted secretory signal peptide; it may be targeted to both the secretory pathway and the peroxisomes and is thought to be located in the extracellular matrix. AthCSY1 is expr
Probab=95.75 E-value=0.027 Score=61.73 Aligned_cols=87 Identities=20% Similarity=0.224 Sum_probs=63.6
Q ss_pred HHHHHhhhcCCC--cccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchheeeeecC-
Q 007482 347 IISTISDDRGEE--PCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARA- 423 (602)
Q Consensus 347 i~t~I~~~~g~~--i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~r~~ast- 423 (602)
..|+|+...|+. +.|||+++.||..+. +|+++.||||+|+-|++++.+.|+.-|. .|..-|.. ...+..+.
T Consensus 35 ~~t~Is~iDg~~G~L~YRGy~I~dLa~~~-~feEv~~LLl~G~LPt~~el~~f~~~L~---~~~~lp~~--v~~~i~~~p 108 (410)
T cd06115 35 VRSKISYIDGDKGILRYRGYPIEELAEKS-TFLEVAYLLIYGNLPTKSQLSDWEFAVS---QHTAVPTG--VLDMIKSFP 108 (410)
T ss_pred EEeeCeeEeCCCCeEEECCccHHHHHhcC-CHHHHHHHHHcCCCcCHHHHHHHHHHHH---HccCCCHH--HHHHHHhCC
Confidence 446777777664 579999999999998 9999999999999999988888888774 44443333 12223232
Q ss_pred -CCChHHHHHHhhccCC
Q 007482 424 -GKDLVSSLVSGLLTIG 439 (602)
Q Consensus 424 -~~~~~~av~agl~a~G 439 (602)
..+|-..+.+++++++
T Consensus 109 ~~~hPM~~L~~~vs~l~ 125 (410)
T cd06115 109 HDAHPMGMLVSAISALS 125 (410)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 3567777777777764
No 86
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) h
Probab=95.74 E-value=0.0067 Score=66.37 Aligned_cols=81 Identities=16% Similarity=0.141 Sum_probs=59.3
Q ss_pred CcccCCCCCcccccCC-----CcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchheeeeecCC-CChHHHH
Q 007482 358 EPCYAGVPMSSIVEQG-----YGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAG-KDLVSSL 431 (602)
Q Consensus 358 ~i~~rg~dL~~li~~~-----~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~r~~ast~-~~~~~av 431 (602)
.+.|||+++.||+.+. .+|++++|+||+|+.|++++.+.|+..|.-+ ..-++. .+..+..+.+ .++-..+
T Consensus 37 ~L~yRGy~I~dLa~~~p~~~~~sFEev~yLLl~G~LPt~~el~~f~~~L~~~---~~lp~~-~~~~~i~~~p~~hpM~~L 112 (406)
T cd06113 37 KLYYRGYDVEDLVNGAQKENRFGFEETAYLLLFGYLPNKEELEEFCEILSSY---RTLPDN-FVEDVILKAPSKDIMNKL 112 (406)
T ss_pred eeeECCCcHHHHHhhcccccCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHh---cCCCHH-HHHHHHHhCCCcCHHHHH
Confidence 4889999999999642 3899999999999999999999999988544 433333 2222333332 4788899
Q ss_pred HHhhccCCCCC
Q 007482 432 VSGLLTIGPRF 442 (602)
Q Consensus 432 ~agl~a~Gp~h 442 (602)
.++++++|...
T Consensus 113 ~a~v~~l~~~~ 123 (406)
T cd06113 113 QRSVLALYSYD 123 (406)
T ss_pred HHHHHhccccC
Confidence 99888886443
No 87
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate, but has a partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate, prefer PrCoA as substrate, but can also can use AcCoA. Re 2-MCS1 at a low rate can use butyryl-CoA and valeryl-CoA. A second Ralstonia eu
Probab=95.73 E-value=0.034 Score=60.14 Aligned_cols=86 Identities=9% Similarity=0.078 Sum_probs=62.5
Q ss_pred HHHHhhhcCC--CcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchheeeeecC--
Q 007482 348 ISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARA-- 423 (602)
Q Consensus 348 ~t~I~~~~g~--~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~r~~ast-- 423 (602)
.|+||...++ .+.|||+++.||..+. +|+++.|+||+|+-|++++.+.|..-|.- |..-+.. ...+..+-
T Consensus 10 ~T~is~v~~~~g~L~YRGy~i~dLa~~~-~FEeva~LL~~G~lPt~~el~~f~~~L~~---~~~lp~~--v~~~i~~~p~ 83 (366)
T cd06117 10 NTALCTVGRSGNDLHYRGYDILDLAEKC-EFEEVAHLLVHGKLPTKSELAAYKTKLKS---LRGLPAN--VKTALEQLPA 83 (366)
T ss_pred cccCeeeecccCEEEECCccHHHHHhcC-CHHHHHHHHHcCCCCCHHHHHHHHHHHHH---ccCCCHH--HHHHHHhCCc
Confidence 3567776554 4779999999999998 99999999999999998888888887743 3333333 22233333
Q ss_pred CCChHHHHHHhhccCC
Q 007482 424 GKDLVSSLVSGLLTIG 439 (602)
Q Consensus 424 ~~~~~~av~agl~a~G 439 (602)
.+++-..+.+++++++
T Consensus 84 ~~hpm~~l~~~vs~l~ 99 (366)
T cd06117 84 AAHPMDVMRTGVSVLG 99 (366)
T ss_pred cCCHHHHHHHHHhhhc
Confidence 3577888888887764
No 88
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-I, one of two CS isozymes in the gram-positive B. subtilis. The majority of CS activity in B. subtilis is provided by the other isozyme, BsCS-II (not included in this group). BsCS-
Probab=95.69 E-value=0.032 Score=59.93 Aligned_cols=102 Identities=19% Similarity=0.152 Sum_probs=67.8
Q ss_pred HHHHhhhcCCC--cccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchheeeeecCCC
Q 007482 348 ISTISDDRGEE--PCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGK 425 (602)
Q Consensus 348 ~t~I~~~~g~~--i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~r~~ast~~ 425 (602)
.|+|+...|+. +.|||+++.||..+. +|+++.|+||+|+-|++++.+.|..-|.-. ..-+..+... +-.-...
T Consensus 10 ~t~Is~idg~~G~L~YRGy~i~dL~~~~-~feev~~LLl~G~lP~~~el~~f~~~l~~~---~~lp~~v~~~-~~~~~~~ 84 (349)
T cd06109 10 ETVLSDVDGEAGRLIIRGYSVEDLAGSA-SFEDVAALLWNGFFPDLPELEEFRAALAAA---RALPDVVAAL-LPALAGL 84 (349)
T ss_pred eeeceeEeCCCCeEEECCccHHHHHhhC-CHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCCCHHHHHH-HHhCCCc
Confidence 46777776543 789999999999998 999999999999999888877777766544 2222221111 1111446
Q ss_pred ChHHHHHHhhccCCCCCcChHHHHHHHHHHH
Q 007482 426 DLVSSLVSGLLTIGPRFGGAIDDAARYFKDA 456 (602)
Q Consensus 426 ~~~~av~agl~a~Gp~hgGa~~~a~~~l~~~ 456 (602)
++-..+.+++.+++.. ...+.+.+++..+
T Consensus 85 ~pm~~l~~~~s~~~~~--~~~~~a~~liA~~ 113 (349)
T cd06109 85 DPMDALRALLALLPDS--PDLATALRLLAAA 113 (349)
T ss_pred CHHHHHHHHHHhcCch--hHHHHHHHHHHHH
Confidence 6777788877777543 2344555555543
No 89
>PRK14033 citrate synthase; Provisional
Probab=95.68 E-value=0.029 Score=60.89 Aligned_cols=92 Identities=13% Similarity=0.068 Sum_probs=62.0
Q ss_pred cHHHHHHHhhhcCC--CcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchheeeee
Q 007482 344 PTHIISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTA 421 (602)
Q Consensus 344 ~~~i~t~I~~~~g~--~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~r~~a 421 (602)
.....|+|+...++ .+.|||+|+.||+++. +|++++|+||+|+.|++.+.+.++..|. .|..-+..+....-..
T Consensus 16 v~v~~S~Is~id~~~g~L~yRG~di~dLa~~~-sfeeva~LL~~G~lP~~~el~~f~~~l~---~~~~~p~~v~~~~~~~ 91 (375)
T PRK14033 16 VVVDTTAISKVVPETNSLTYRGYPVQDLAARC-SFEEVAYLLWNGELPTDAELALFSQRER---AYRRLDRSVLSLIDKL 91 (375)
T ss_pred ceEeeccCeEEECCCCeEEECCccHHHHHhcC-CHHHHHHHHHcCCCCCHHHHHHHHHHHH---HccCCCHHHHHHHHhC
Confidence 33455778887765 4689999999999998 9999999999998888888888888663 2333333311111112
Q ss_pred cCCCChHHHHHHhhccCC
Q 007482 422 RAGKDLVSSLVSGLLTIG 439 (602)
Q Consensus 422 st~~~~~~av~agl~a~G 439 (602)
-...++-..+.+++.+++
T Consensus 92 p~~~~pm~~l~~~vs~l~ 109 (375)
T PRK14033 92 PTTCHPMDVVRTAVSYLG 109 (375)
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 223556666666666553
No 90
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group is similar to gram-negative Escherichia coli (Ec) CS (type II, gltA) and Arabidopsis thaliana (Ath) peroxisomal (Per) CS. However EcCS and AthPerCS are not found in this group. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers w
Probab=95.58 E-value=0.03 Score=60.84 Aligned_cols=88 Identities=19% Similarity=0.146 Sum_probs=62.2
Q ss_pred HHHHhhhcCCC--cccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchheeeeecCCC
Q 007482 348 ISTISDDRGEE--PCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGK 425 (602)
Q Consensus 348 ~t~I~~~~g~~--i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~r~~ast~~ 425 (602)
.|+||...|+. +.|||+++.||..+. +|+++.|+||+|+-|++++.+.|..-|. .|..-+..+....-.-.-..
T Consensus 16 ~t~Is~iDg~~G~L~YRGy~I~dL~~~~-~feEv~yLLl~G~lPt~~el~~f~~~L~---~~~~lp~~v~~~l~~~p~~~ 91 (384)
T cd06116 16 KSAITYIDGEKGILRYRGYPIEQLAEQS-SYLEVAYLLLHGELPTKERLAQWVYDIT---RHTMTHENLKKFMDGFRYDA 91 (384)
T ss_pred eeEeeeEeCCCCeEEECCccHHHHhccC-CHHHHHHHHHCCCCCCHHHHHHHHHHHH---HccCCCHHHHHHHHhcCcCC
Confidence 35677766654 679999999999998 9999999999999999888888888773 44444333122211112335
Q ss_pred ChHHHHHHhhccCC
Q 007482 426 DLVSSLVSGLLTIG 439 (602)
Q Consensus 426 ~~~~av~agl~a~G 439 (602)
+|-..+.+++.+++
T Consensus 92 hPM~~L~~~vs~l~ 105 (384)
T cd06116 92 HPMGILISSVAALS 105 (384)
T ss_pred CcHHHHHHHHHhhh
Confidence 67777777777764
No 91
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=95.50 E-value=0.094 Score=54.74 Aligned_cols=116 Identities=16% Similarity=0.119 Sum_probs=81.1
Q ss_pred CcEEEEe-eCCcH-HHHHHHhcCCeE-EEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhH
Q 007482 10 TTQALFY-NYKQL-PIQRMLDFDFLC-VAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAA 86 (602)
Q Consensus 10 ~s~avv~-g~~~~-~~~~~~~~g~~~-V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~ 86 (602)
++|++|| |..|. +.+||++-||.+ |+-.+ |.+.- +. -.-.|...+.|..|+.. +.|++|.+||....+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~-~~ka~---~~--~~~~Ga~~a~s~~eaa~---~aDvVitmv~~~~~V 71 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRT-PEKAA---EL--LAAAGATVAASPAEAAA---EADVVITMLPDDAAV 71 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCC-hhhhh---HH--HHHcCCcccCCHHHHHH---hCCEEEEecCCHHHH
Confidence 4688887 54444 999999999986 43333 42310 00 12348899999988765 479999999998888
Q ss_pred HHHHHH----hhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeE-cCCccc
Q 007482 87 ASSMAA----LKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVI-GPATVG 134 (602)
Q Consensus 87 ~~~~e~----~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~rii-GPNc~G 134 (602)
.+++.. +....-..++|-.|=.+.+..+++.+.++++|++.+ .|=+-|
T Consensus 72 ~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg 124 (286)
T COG2084 72 RAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGG 124 (286)
T ss_pred HHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCC
Confidence 887742 222334567777888888889999999999998744 454333
No 92
>PRK14035 citrate synthase; Provisional
Probab=95.44 E-value=0.034 Score=60.16 Aligned_cols=87 Identities=15% Similarity=0.103 Sum_probs=61.6
Q ss_pred HHHHhhhcCCCcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchheeeee--cCCC
Q 007482 348 ISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTA--RAGK 425 (602)
Q Consensus 348 ~t~I~~~~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~r~~a--st~~ 425 (602)
.|+|+...++.+.|||+++.||..+. +|+++.|+||+|+.|++++.+-+..-|.- |..-+.. ....+-. ...+
T Consensus 14 ~s~Is~id~~~L~YRGy~i~dLa~~~-~Feeva~LLl~G~lP~~~el~~f~~~L~~---~~~lp~~-v~~~i~~~~~~~~ 88 (371)
T PRK14035 14 ETKISSIIDSQLTYAGYDIDDLAENA-SFEEVIFLLWNYRLPTEEELAHLKGKLRK---YMTLNDR-VYQHFEEYSTDHV 88 (371)
T ss_pred eeeeeEecCCEeEECCccHHHHHhcC-CHHHHHHHHHCCcCCCHHHHHHHHHHHHH---cCCCCHH-HHHHHHhcCCcCC
Confidence 36778877888999999999999988 99999999999999988888888776653 3333333 1111111 1235
Q ss_pred ChHHHHHHhhccCC
Q 007482 426 DLVSSLVSGLLTIG 439 (602)
Q Consensus 426 ~~~~av~agl~a~G 439 (602)
++-..+.+++.+++
T Consensus 89 hpm~~l~~~vs~l~ 102 (371)
T PRK14035 89 HPMTALRTSVSYLA 102 (371)
T ss_pred CHHHHHHHHHHHHh
Confidence 66667777776654
No 93
>PRK10206 putative oxidoreductase; Provisional
Probab=95.38 E-value=0.078 Score=56.81 Aligned_cols=110 Identities=15% Similarity=0.044 Sum_probs=69.0
Q ss_pred cEEEEe-eC-CcH-HHHHHHh--cCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhh
Q 007482 11 TQALFY-NY-KQL-PIQRMLD--FDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSA 85 (602)
Q Consensus 11 s~avv~-g~-~~~-~~~~~~~--~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~ 85 (602)
.++||| |. .++ ++..++. .++++++..+ +... .. .+ .++..+.+.|.|.+|++.. +++|+++|++|...-
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d-~~~~-~~-~~-~~~~~~~~~~~~~~ell~~-~~iD~V~I~tp~~~H 77 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFR-RHAK-PE-EQ-APIYSHIHFTSDLDEVLND-PDVKLVVVCTHADSH 77 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEc-CChh-HH-HH-HHhcCCCcccCCHHHHhcC-CCCCEEEEeCCchHH
Confidence 578886 32 222 4554533 3577765555 4221 11 11 1223357899999999864 369999999999876
Q ss_pred HHHHHHHhhCCCCcEEEEe-cCCCCHHHHHHHHHHHHhCCCee
Q 007482 86 AASSMAALKQPTIRVVAII-AEGVPEADTKQLIAYARSNNKVV 127 (602)
Q Consensus 86 ~~~~~e~~~~~gv~~~vii-s~Gf~E~~~~~l~~~a~~~g~ri 127 (602)
.+.+++++. +|. .+++= .=.....+.++|++.|+++|+.+
T Consensus 78 ~~~~~~al~-aGk-hVl~EKPla~~~~ea~~l~~~a~~~~~~l 118 (344)
T PRK10206 78 FEYAKRALE-AGK-NVLVEKPFTPTLAEAKELFALAKSKGLTV 118 (344)
T ss_pred HHHHHHHHH-cCC-cEEEecCCcCCHHHHHHHHHHHHHhCCEE
Confidence 666666655 784 44441 11233346789999999999875
No 94
>PRK14034 citrate synthase; Provisional
Probab=95.37 E-value=0.048 Score=59.03 Aligned_cols=85 Identities=15% Similarity=0.172 Sum_probs=60.1
Q ss_pred HHHhhhcCCCcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchheeeeecC---CC
Q 007482 349 STISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARA---GK 425 (602)
Q Consensus 349 t~I~~~~g~~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~r~~ast---~~ 425 (602)
|.|+...++.+.|||+++.||..+. +|+++.|+||+|+.|++++.+.|..-|.-+. .-+.. ...+..+. ..
T Consensus 15 s~is~i~~~~L~YRGy~i~dLa~~~-~fEeva~LLl~G~lPt~~el~~f~~~L~~~~---~lp~~--v~~~l~~~p~~~~ 88 (372)
T PRK14034 15 SSVSSIIDDTLTYVGYNIDDLAENA-SFEEVVYLLWHRKLPNKQELAEFKEQLSENA---KVPGE--IIEHLKQYDLKKV 88 (372)
T ss_pred eEeeccCCCeEEECCccHHHHhccC-CHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc---CCCHH--HHHHHHhCCCcCc
Confidence 5667766777999999999999988 9999999999999998888778877666543 22222 11122212 25
Q ss_pred ChHHHHHHhhccCC
Q 007482 426 DLVSSLVSGLLTIG 439 (602)
Q Consensus 426 ~~~~av~agl~a~G 439 (602)
++-..+.+++.++|
T Consensus 89 hpm~~l~~~vs~l~ 102 (372)
T PRK14034 89 HPMSVLRTAISMLG 102 (372)
T ss_pred CHHHHHHHHHHhhc
Confidence 66667777776664
No 95
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of ide
Probab=95.30 E-value=0.055 Score=58.83 Aligned_cols=88 Identities=15% Similarity=0.123 Sum_probs=63.7
Q ss_pred HHHHHhhhcCCC--cccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchheeeee--c
Q 007482 347 IISTISDDRGEE--PCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTA--R 422 (602)
Q Consensus 347 i~t~I~~~~g~~--i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~r~~a--s 422 (602)
..|+||...|+. +.|||+++.||..+. +|+++.|+||+|+-|++.+.+.|..-|.-+ ..-+.. +..+.- .
T Consensus 15 ~~t~Is~iDg~~G~L~YRGy~I~dLa~~~-~feev~yLLl~G~LPt~~el~~f~~~L~~~---~~lp~~--v~~~i~~~p 88 (382)
T cd06107 15 CESSITYIDGDKGILLYRGYPIEQLAESS-TYEEVAYLLLWGELPTQEQYDEFQRRLSEH---MMVPES--VHRLIQTFP 88 (382)
T ss_pred EeeeCeeEeCCCCeEEECCccHHHHHhcC-CHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---cCCCHH--HHHHHHhCC
Confidence 345677776654 679999999999998 999999999999999888888888866544 333333 222232 2
Q ss_pred CCCChHHHHHHhhccCCC
Q 007482 423 AGKDLVSSLVSGLLTIGP 440 (602)
Q Consensus 423 t~~~~~~av~agl~a~Gp 440 (602)
...+|-..+.+++.+++.
T Consensus 89 ~~~hPM~~L~~~vs~l~~ 106 (382)
T cd06107 89 RDAHPMGILCAGLSALSA 106 (382)
T ss_pred CCCCcHHHHHHHHHhhcc
Confidence 336777888888877754
No 96
>TIGR01798 cit_synth_I citrate synthase I (hexameric type). This model describes one of several distinct but closely homologous classes of citrate synthase, the protein that brings carbon (from acetyl-CoA) into the TCA cycle. This form, class I, is known to be hexameric and allosterically inhibited by NADH in Escherichia coli, Acinetobacter anitratum, Azotobacter vinelandii, Pseudomonas aeruginosa, etc. In most species with a class I citrate synthase, a dimeric class II isozyme is found. The class II enzyme may act primarily on propionyl-CoA to make 2-methylcitrate or be bifunctional, may be found among propionate utilization enzymes, and may be constitutive or induced by propionate. Some members of this model group as class I enzymes, and may be hexameric, but have shown regulatory properties more like class II enzymes.
Probab=95.25 E-value=0.04 Score=60.39 Aligned_cols=86 Identities=14% Similarity=0.062 Sum_probs=61.0
Q ss_pred HHHHhhhcCCC--cccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchheeeeecC--
Q 007482 348 ISTISDDRGEE--PCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARA-- 423 (602)
Q Consensus 348 ~t~I~~~~g~~--i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~r~~ast-- 423 (602)
.|+|+...|+. +.|||+++.||..+. +|+++.||||+|+-|++++.+.|..-|.- |..-|.. ...+.-+.
T Consensus 43 ~s~Is~iDg~~G~L~YRGy~I~dL~~~~-~feEv~yLLl~G~LPt~~el~~f~~~L~~---~~~lp~~--v~~~i~~~p~ 116 (412)
T TIGR01798 43 ESKITFIDGDKGILLYRGYPIDQLATKS-DYLEVCYLLLNGELPTAEQKDEFDDTVTR---HTMVHEQ--VTRFFNGFRR 116 (412)
T ss_pred eeeCeeEeCCCCEEEECCccHHHHhccC-CHHHHHHHHHcCCCCCHHHHHHHHHHHHH---ccCCCHH--HHHHHHhCCC
Confidence 35677776664 679999999999998 99999999999999999888888887743 3333333 11122222
Q ss_pred CCChHHHHHHhhccCC
Q 007482 424 GKDLVSSLVSGLLTIG 439 (602)
Q Consensus 424 ~~~~~~av~agl~a~G 439 (602)
..+|-..+.+++++++
T Consensus 117 ~~hPM~~L~~~vs~l~ 132 (412)
T TIGR01798 117 DAHPMAVMVGVVGALS 132 (412)
T ss_pred cCChHHHHHHHHHHHh
Confidence 2467777777776664
No 97
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=95.22 E-value=0.05 Score=55.07 Aligned_cols=80 Identities=16% Similarity=0.233 Sum_probs=58.5
Q ss_pred eecccccCCHHHHhhcCCCccEEEEecCChhhHHHHHHHhhCCCCcEEEEecCC-CC-HHHHHHHHHHHHhCCCe-eEcC
Q 007482 54 EIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEG-VP-EADTKQLIAYARSNNKV-VIGP 130 (602)
Q Consensus 54 v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~~e~~~~~gv~~~viis~G-f~-E~~~~~l~~~a~~~g~r-iiGP 130 (602)
..|.++|.+++|+... ++|++++++|.....+-+.+.+ ++|.. ++|.+-| +. .++.++|++.|+++|.+ .+++
T Consensus 21 ~~g~~~~~d~~eLl~~--~vDaVviatp~~~H~e~a~~aL-~aGkh-Vl~~s~gAlad~e~~~~l~~aA~~~g~~l~i~s 96 (229)
T TIGR03855 21 RCGAKIVSDFDEFLPE--DVDIVVEAASQEAVKEYAEKIL-KNGKD-LLIMSVGALADRELRERLREVARSSGRKVYIPS 96 (229)
T ss_pred HhCCceECCHHHHhcC--CCCEEEECCChHHHHHHHHHHH-HCCCC-EEEECCcccCCHHHHHHHHHHHHhcCCEEEECh
Confidence 4567899999998653 5899999999986555555555 48866 5556665 54 35788999999999987 6676
Q ss_pred Ccccccc
Q 007482 131 ATVGGIQ 137 (602)
Q Consensus 131 Nc~G~~~ 137 (602)
+.+|..+
T Consensus 97 Gai~g~d 103 (229)
T TIGR03855 97 GAIGGLD 103 (229)
T ss_pred HHHHHHH
Confidence 6665543
No 98
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=95.21 E-value=0.038 Score=53.70 Aligned_cols=87 Identities=9% Similarity=-0.020 Sum_probs=59.8
Q ss_pred cEEEEe-eCCcHHH---HHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHh---hcCCCccEEEEecCCh
Q 007482 11 TQALFY-NYKQLPI---QRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAAC---AAHPMADVFINFSSFR 83 (602)
Q Consensus 11 s~avv~-g~~~~~~---~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~---~~~p~vDlavi~vp~~ 83 (602)
.+++|| |.-|+.+ ..+.+.++++++..+ -.. ..-|.++.++|+|. ++++. .+. ++|.++++||+.
T Consensus 86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FD-v~~-----~~VG~~~~~v~V~~-~d~le~~v~~~-dv~iaiLtVPa~ 157 (211)
T COG2344 86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFD-VDP-----DKVGTKIGDVPVYD-LDDLEKFVKKN-DVEIAILTVPAE 157 (211)
T ss_pred eEEEEccChHHHHHhcCcchhhcCceEEEEec-CCH-----HHhCcccCCeeeec-hHHHHHHHHhc-CccEEEEEccHH
Confidence 455664 3445522 345567888876654 211 13457899999994 56643 234 599999999997
Q ss_pred hhHHHHHHHhhCCCCcEEEEecC
Q 007482 84 SAAASSMAALKQPTIRVVAIIAE 106 (602)
Q Consensus 84 ~~~~~~~e~~~~~gv~~~viis~ 106 (602)
. ..++.+.+.++|||++.=+|.
T Consensus 158 ~-AQ~vad~Lv~aGVkGIlNFtP 179 (211)
T COG2344 158 H-AQEVADRLVKAGVKGILNFTP 179 (211)
T ss_pred H-HHHHHHHHHHcCCceEEeccc
Confidence 5 788889999999999988775
No 99
>PRK14032 citrate synthase; Provisional
Probab=95.13 E-value=0.013 Score=64.77 Aligned_cols=80 Identities=19% Similarity=0.220 Sum_probs=60.6
Q ss_pred CcccCCCCCcccccCC-----CcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchheeeeecC-CCChHHHH
Q 007482 358 EPCYAGVPMSSIVEQG-----YGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARA-GKDLVSSL 431 (602)
Q Consensus 358 ~i~~rg~dL~~li~~~-----~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~r~~ast-~~~~~~av 431 (602)
.+.|||+++.||+++. .+|+++.|+||+|+.|++++.+.|++.|.-..+ -+.. ++..+..+. ..+|-..+
T Consensus 67 ~L~YRGy~I~dLa~~~~~~~~~~FeEv~~LLl~G~LPt~~el~~f~~~L~~~~~---lp~~-~v~~~i~~~p~~hPM~~L 142 (447)
T PRK14032 67 KLYYRGYDIKDLVNGFLKEKRFGFEEVAYLLLFGELPTKEELAEFTELLGDYRE---LPDG-FTRDMILKAPSKDIMNSL 142 (447)
T ss_pred ceeECCccHHHHHhhcccccCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC---CCHH-HHHHHHHhCCCcCHHHHH
Confidence 3889999999999883 389999999999999999999999999965544 2232 233333332 34788899
Q ss_pred HHhhccCCCC
Q 007482 432 VSGLLTIGPR 441 (602)
Q Consensus 432 ~agl~a~Gp~ 441 (602)
.++++++|..
T Consensus 143 ~a~vsaL~~~ 152 (447)
T PRK14032 143 ARSVLALYSY 152 (447)
T ss_pred HHHHHhhhhc
Confidence 9999888643
No 100
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.09 E-value=0.086 Score=55.30 Aligned_cols=111 Identities=9% Similarity=-0.031 Sum_probs=70.6
Q ss_pred cEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhHHH
Q 007482 11 TQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAAS 88 (602)
Q Consensus 11 s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~ 88 (602)
++.+|| |..|. +.++|.+.|++++ ..+ .... +.+.+ .-.|..++.|.+++..+....|++++++|....+..
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~-v~d-r~~~-~~~~~---~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~ 75 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVV-GYD-VNQE-AVDVA---GKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTES 75 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEE-EEE-CCHH-HHHHH---HHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHH
Confidence 578886 43344 8899999999863 333 3211 11111 124678899999976532125999999999756777
Q ss_pred HHHHhhCC-CCcEEEEecCCCCHHHHHHHHHHHHhCCCee
Q 007482 89 SMAALKQP-TIRVVAIIAEGVPEADTKQLIAYARSNNKVV 127 (602)
Q Consensus 89 ~~e~~~~~-gv~~~viis~Gf~E~~~~~l~~~a~~~g~ri 127 (602)
+++.+... .-+.++|-++.......+++.+.++++|++.
T Consensus 76 v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~ 115 (299)
T PRK12490 76 VIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHY 115 (299)
T ss_pred HHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeE
Confidence 77776532 2234666666665556777777888887753
No 101
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like. Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-neg
Probab=95.09 E-value=0.18 Score=55.52 Aligned_cols=90 Identities=10% Similarity=-0.021 Sum_probs=65.3
Q ss_pred HHHHHHHhhhcCCC-cccCCCCCcccccCCCc---------HHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccc
Q 007482 345 THIISTISDDRGEE-PCYAGVPMSSIVEQGYG---------VGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGA 414 (602)
Q Consensus 345 ~~i~t~I~~~~g~~-i~~rg~dL~~li~~~~~---------~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~ 414 (602)
....|+||...|+. +.|||+++.||..+. + |++++|+||+|+-|++++.+.|+.-|.-. ..-+..
T Consensus 44 ~~~~t~iS~iDg~~Gl~YRGy~I~dLa~~~-~~~~~~~~~~fEev~yLLl~G~LPt~~el~~f~~~L~~~---~~lp~~- 118 (427)
T cd06105 44 KGLVWETSVLDPEEGIRFRGLSIPECQKLL-PKAPGGEEPLPEGLFWLLLTGEVPTKEQVSALSKEWAAR---AALPSH- 118 (427)
T ss_pred eecceeceeEcCCCCeEECCccHHHHHhhC-cccccccccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCCCHH-
Confidence 34456888876555 789999999999876 5 89999999999999988888888876644 332222
Q ss_pred hheeeeecC--CCChHHHHHHhhccCCC
Q 007482 415 HNTIVTARA--GKDLVSSLVSGLLTIGP 440 (602)
Q Consensus 415 ~a~r~~ast--~~~~~~av~agl~a~Gp 440 (602)
+..+..+. ..+|-..+.+++++++.
T Consensus 119 -v~~~i~~~p~~~hPM~~L~~~vsaL~~ 145 (427)
T cd06105 119 -VVTMLDNFPTNLHPMSQLSAAITALNS 145 (427)
T ss_pred -HHHHHHhCCCCCCHHHHHHHHHHhhhc
Confidence 22233333 35788888888888753
No 102
>PRK09569 type I citrate synthase; Reviewed
Probab=94.89 E-value=0.098 Score=57.77 Aligned_cols=90 Identities=13% Similarity=0.031 Sum_probs=62.7
Q ss_pred HHHHHHhhhcCCC-cccCCCCCcccccCC--------CcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchh
Q 007482 346 HIISTISDDRGEE-PCYAGVPMSSIVEQG--------YGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHN 416 (602)
Q Consensus 346 ~i~t~I~~~~g~~-i~~rg~dL~~li~~~--------~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a 416 (602)
...|+||...|+. +.|||+++.||..+. .+|++++||||+|+-|++++.+.|+.-|.- |..-|..+..
T Consensus 47 ~~~t~IS~iDg~~Gl~YRGy~I~dL~~~~p~~~~~~~~~fEev~~LLl~G~LPt~~el~~f~~~L~~---~~~lp~~v~~ 123 (437)
T PRK09569 47 SLVTDISYLDPQEGIRFRGKTIPETFEALPKAPGSEYPTVESFWYFLLTGEVPTQEQVQEVVAEWKK---RQNVPQYVID 123 (437)
T ss_pred ecceeceeecCCCceeECCccHHHHHhhCccccccCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCCCCHHHHH
Confidence 4556777765543 789999999999873 389999999999999998888888887744 3333333222
Q ss_pred eeeeecCCCChHHHHHHhhccC
Q 007482 417 TIVTARAGKDLVSSLVSGLLTI 438 (602)
Q Consensus 417 ~r~~ast~~~~~~av~agl~a~ 438 (602)
..-.-....+|-..+.++++++
T Consensus 124 ~i~~~p~~~hPM~~L~~~vs~l 145 (437)
T PRK09569 124 AIRALPRDSHPMVMLSVGILAM 145 (437)
T ss_pred HHHhCCCCCCHHHHHHHHHHhc
Confidence 2112223367777777777775
No 103
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=94.89 E-value=0.09 Score=55.20 Aligned_cols=113 Identities=12% Similarity=0.015 Sum_probs=69.5
Q ss_pred CcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhHH
Q 007482 10 TTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAA 87 (602)
Q Consensus 10 ~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~ 87 (602)
++|++|| |..|. +.++|++.|++++ ..+ +.... .+.+ .-.|..++.|.+|+.....+.|++++++|....+.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~-v~d-r~~~~-~~~~---~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~ 74 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVV-GYD-RNPEA-VEAL---AEEGATGADSLEELVAKLPAPRVVWLMVPAGEITD 74 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEE-EEE-CCHHH-HHHH---HHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHH
Confidence 3688886 44444 8899999999863 333 32211 1111 11477888899987653212599999999875566
Q ss_pred HHHHHhhCC-CCcEEEEecCCCCHHHHHHHHHHHHhCCCeeE
Q 007482 88 SSMAALKQP-TIRVVAIIAEGVPEADTKQLIAYARSNNKVVI 128 (602)
Q Consensus 88 ~~~e~~~~~-gv~~~viis~Gf~E~~~~~l~~~a~~~g~rii 128 (602)
++++.+... .-+.++|-.+.......+++.+.+++.|++.+
T Consensus 75 ~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~ 116 (301)
T PRK09599 75 ATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFV 116 (301)
T ss_pred HHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEE
Confidence 776655421 12234444444444456677788888888765
No 104
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=94.74 E-value=0.13 Score=57.67 Aligned_cols=120 Identities=9% Similarity=-0.091 Sum_probs=75.1
Q ss_pred CcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccC-ceeecc---cccCCHHHHhhcCCCccEEEEecCCh
Q 007482 10 TTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFG-QEEIAI---PVHSTVEAACAAHPMADVFINFSSFR 83 (602)
Q Consensus 10 ~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g-~~v~G~---~~y~sv~~i~~~~p~vDlavi~vp~~ 83 (602)
+.+.+|| |..|. +.+||++.||.+. ..+ .... +.+.+-. ....|. ..+.|++|+.....++|+++++||..
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~-V~N-Rt~~-k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~ 83 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPIS-VYN-RTTS-KVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAG 83 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEE-EEC-CCHH-HHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCc
Confidence 3589997 54454 9999999999862 222 2111 1111110 000132 37889999875422369999999999
Q ss_pred hhHHHHHHHhhCC-CCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCc
Q 007482 84 SAAASSMAALKQP-TIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPAT 132 (602)
Q Consensus 84 ~~~~~~~e~~~~~-gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc 132 (602)
..++++++.+... .-..++|-.+-....+.+++.+.++++|++.++---
T Consensus 84 ~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapV 133 (493)
T PLN02350 84 APVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGV 133 (493)
T ss_pred HHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCC
Confidence 8888887654421 223355545544445677778888999999888643
No 105
>PLN02456 citrate synthase
Probab=94.74 E-value=0.08 Score=58.76 Aligned_cols=87 Identities=21% Similarity=0.255 Sum_probs=63.6
Q ss_pred HHHHHhhhcCCC--cccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchheeeeecC-
Q 007482 347 IISTISDDRGEE--PCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARA- 423 (602)
Q Consensus 347 i~t~I~~~~g~~--i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~r~~ast- 423 (602)
..|+|+...|+. +.|||+++.||..+. +|+++.|+||+|+-|++++.+.|+.-|. +|..-+.. +..+..+.
T Consensus 74 ~~s~IS~iDg~~G~L~YRGy~I~dLa~~~-~feevayLLl~G~LPt~~el~~f~~~L~---~~~~lp~~--v~~~i~~~p 147 (455)
T PLN02456 74 VLSEISLIDGDEGILRFRGYPIEELAEKS-PFEEVAYLLLYGNLPTKEQLADWEAELR---QHSAVPEH--VLDVIDALP 147 (455)
T ss_pred eeeeceEEeCCCCEEEECCccHHHHHhcC-CHHHHHHHHHcCcCCCHHHHHHHHHHHH---HhcCCCHH--HHHHHHhCC
Confidence 446777776654 579999999999998 9999999999999998888888888764 44544433 22233333
Q ss_pred -CCChHHHHHHhhccCC
Q 007482 424 -GKDLVSSLVSGLLTIG 439 (602)
Q Consensus 424 -~~~~~~av~agl~a~G 439 (602)
.++|-..+.+++++++
T Consensus 148 ~~~hPM~~L~~~vsal~ 164 (455)
T PLN02456 148 HDAHPMTQLVSGVMALS 164 (455)
T ss_pred CcCCcHHHHHHHHHhhh
Confidence 3567777788777764
No 106
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=94.63 E-value=0.21 Score=53.21 Aligned_cols=95 Identities=17% Similarity=0.077 Sum_probs=62.2
Q ss_pred CCCCCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCC-CCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCC
Q 007482 6 LFSKTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINP-GAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSF 82 (602)
Q Consensus 6 l~~p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p-~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~ 82 (602)
.+..++++||| |..|+ +.++|++.|++++.+.. + .+..+. .+-.|..+. +++|+.+ +.|+++++||+
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r-~~~~s~~~-----A~~~G~~~~-s~~eaa~---~ADVVvLaVPd 83 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLR-EGSKSWKK-----AEADGFEVL-TVAEAAK---WADVIMILLPD 83 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEEC-CchhhHHH-----HHHCCCeeC-CHHHHHh---cCCEEEEcCCH
Confidence 45678899997 44455 88999999998754443 3 221110 122356555 8888765 47999999998
Q ss_pred hhhHHHHH-HHhhC-CCCcEEEEecCCCCHH
Q 007482 83 RSAAASSM-AALKQ-PTIRVVAIIAEGVPEA 111 (602)
Q Consensus 83 ~~~~~~~~-e~~~~-~gv~~~viis~Gf~E~ 111 (602)
.. ...++ +++.. ..-..++++++||+-.
T Consensus 84 ~~-~~~V~~~~I~~~Lk~g~iL~~a~G~~i~ 113 (330)
T PRK05479 84 EV-QAEVYEEEIEPNLKEGAALAFAHGFNIH 113 (330)
T ss_pred HH-HHHHHHHHHHhcCCCCCEEEECCCCChh
Confidence 75 46666 54542 1224577999999865
No 107
>PLN02235 ATP citrate (pro-S)-lyase
Probab=94.46 E-value=0.32 Score=53.27 Aligned_cols=127 Identities=13% Similarity=0.079 Sum_probs=92.1
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhcC--CceeEEeeccCCCCCCCCHHHHHHHhh----cCCCccEEEEEEecCCCc---
Q 007482 160 RPGSVGFVSKSGGMSNELYNTIARVT--DGIYEGIAIGGDVFPGSTLSDHILRFN----NIPQVKMMVVLGELGGRD--- 230 (602)
Q Consensus 160 ~~G~valvSQSG~l~~~~~~~~~~~g--~G~s~~vs~Gn~~~~dv~~~d~l~~l~----~Dp~t~~I~ly~E~g~~~--- 230 (602)
..|+|+.+.-.|+++.+.+|.....| --...+..+|+.+ +.-...++++-+. .||++|+|++-+=-|+.+
T Consensus 268 ldG~Ig~mvnGAGlamaTmD~I~~~G~~g~pANFlDvGG~a-~~e~v~~a~~iil~~~~~~~~vk~ilvnIfGGI~rcd~ 346 (423)
T PLN02235 268 PKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAP-NEEEVLQYARVVIDCATANPDGRKRALLIGGGIANFTD 346 (423)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHcCCCCCCceeeecCCCC-CHHHHHHHHHHHHhhhhcCCCCcEEEEEEecccccchh
Confidence 46999999999999999999999888 4589999999976 2556667777776 799999998888734443
Q ss_pred -H---HHHHHHHHhcC-----CCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHHHHHHHcC--CcccCCHHH
Q 007482 231 -E---YSLVEALKQGK-----VNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAG--AVVPTSYEA 299 (602)
Q Consensus 231 -~---~~f~~~~r~~~-----~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaG--vi~v~~~~e 299 (602)
. +...+++++.. .++|||+-..|.+..- + - +..+.++++.| +...+.-..
T Consensus 347 VA~tf~GIi~A~~e~~~kl~~~~vpivVRl~GtN~ee-------G--------~----~il~e~~~~~gl~i~~~~~~~~ 407 (423)
T PLN02235 347 VAATFNGIIRALREKESKLKAARMHIFVRRGGPNYQK-------G--------L----AKMRALGEEIGVPIEVYGPEAT 407 (423)
T ss_pred hhhhhhHHHHHHHHhhhccccCCccEEEECCCCCHHH-------H--------H----HHHHHhHHhcCCcEEEeCCCCC
Confidence 2 45677777754 4789999888877642 0 1 45555667999 666662224
Q ss_pred HHHHHHH
Q 007482 300 FESAIKE 306 (602)
Q Consensus 300 l~~~~~~ 306 (602)
|-++++.
T Consensus 408 m~~a~~~ 414 (423)
T PLN02235 408 MTGICKQ 414 (423)
T ss_pred HHHHHHH
Confidence 4444443
No 108
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=94.41 E-value=0.16 Score=56.89 Aligned_cols=118 Identities=12% Similarity=-0.029 Sum_probs=70.9
Q ss_pred cEEEEe-eCCc-HHHHHHHhcCCeEEEEEeCCCCCCccccccC-ceeec--ccccCCHHHHhhcCCCccEEEEecCChhh
Q 007482 11 TQALFY-NYKQ-LPIQRMLDFDFLCVAGIINPGAEGFQKLFFG-QEEIA--IPVHSTVEAACAAHPMADVFINFSSFRSA 85 (602)
Q Consensus 11 s~avv~-g~~~-~~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g-~~v~G--~~~y~sv~~i~~~~p~vDlavi~vp~~~~ 85 (602)
.++||| |..| .+.+||.+.||++ .+.+ .... +.+.+.. ....| +.++.|++|+.....++|+++++||+...
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~G~~V-~v~d-r~~~-~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~ 79 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASRGFKI-SVYN-RTYE-KTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEA 79 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHCCCeE-EEEe-CCHH-HHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHH
Confidence 478887 5444 4899999999985 2333 2111 1111110 00113 34678999987542236999999998888
Q ss_pred HHHHHHHhhCC-CCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCC
Q 007482 86 AASSMAALKQP-TIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPA 131 (602)
Q Consensus 86 ~~~~~e~~~~~-gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPN 131 (602)
++.+++.+... .-..+||-.+.-...+..++.+.++++|++.++--
T Consensus 80 v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldap 126 (470)
T PTZ00142 80 VDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMG 126 (470)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCC
Confidence 88888876532 11234443333334455566678888899988763
No 109
>PRK05614 gltA type II citrate synthase; Reviewed
Probab=94.37 E-value=0.15 Score=56.13 Aligned_cols=87 Identities=14% Similarity=0.106 Sum_probs=60.9
Q ss_pred HHHHHhhhcCCC--cccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchheeeeecC-
Q 007482 347 IISTISDDRGEE--PCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARA- 423 (602)
Q Consensus 347 i~t~I~~~~g~~--i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~r~~ast- 423 (602)
..|+|+...|+. +.|||+++.||..+. +|+++.|+||+|+-|++++.+.|..-|. .|..-+.. ...+.-+.
T Consensus 55 ~~S~Is~iDg~~G~L~YRGy~i~dLa~~~-~feEva~LLl~G~LP~~~el~~f~~~L~---~~~~lp~~--v~~~i~~~p 128 (419)
T PRK05614 55 CESKITYIDGDKGILLYRGYPIEQLAEKS-DFLEVCYLLLYGELPTAEQKAEFDTTVT---RHTMVHEQ--LKRFFRGFR 128 (419)
T ss_pred eeeeceeEeCCCCEEEECCccHHHHHhcC-CHHHHHHHHHcCcCCCHHHHHHHHHhHh---hccCCCHH--HHHHHHhcC
Confidence 345677766543 679999999999998 9999999999998888888888887663 33443333 12223232
Q ss_pred -CCChHHHHHHhhccCC
Q 007482 424 -GKDLVSSLVSGLLTIG 439 (602)
Q Consensus 424 -~~~~~~av~agl~a~G 439 (602)
..++-..+.+++.+++
T Consensus 129 ~~~hPM~~L~~~vs~l~ 145 (419)
T PRK05614 129 RDAHPMAVLCGVVGALS 145 (419)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 4677777777776654
No 110
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=94.34 E-value=0.18 Score=52.88 Aligned_cols=108 Identities=7% Similarity=-0.017 Sum_probs=70.5
Q ss_pred cEEEEe-eCCcH-HHHHHHhcCCeE-EEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhHH
Q 007482 11 TQALFY-NYKQL-PIQRMLDFDFLC-VAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAA 87 (602)
Q Consensus 11 s~avv~-g~~~~-~~~~~~~~g~~~-V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~ 87 (602)
+|.+|| |..|. +.++|++.|+++ |+..+ |.. +.+ .-.|.....|..|+.. +.|+++++||....+.
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~-~~~----~~~---~~~g~~~~~s~~~~~~---~advVi~~v~~~~~v~ 70 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIG-PVA----DEL---LSLGAVSVETARQVTE---ASDIIFIMVPDTPQVE 70 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCC-HhH----HHH---HHcCCeecCCHHHHHh---cCCEEEEeCCChHHHH
Confidence 578886 44444 889999999986 33332 321 111 1146677888988765 4799999999875556
Q ss_pred HHHHH---hh-CCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEc
Q 007482 88 SSMAA---LK-QPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIG 129 (602)
Q Consensus 88 ~~~e~---~~-~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiG 129 (602)
+++.. +. ...-..++|-.+.......+++.+.++++|++++-
T Consensus 71 ~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vd 116 (292)
T PRK15059 71 EVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLD 116 (292)
T ss_pred HHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 65532 11 11123466767777777888899999998877554
No 111
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=94.27 E-value=0.17 Score=50.44 Aligned_cols=92 Identities=17% Similarity=0.047 Sum_probs=57.8
Q ss_pred CCCCcEEEEe-eCCcH-HHHH--HHhcCCeEEEEEeCCCCCCccccccCceeecccccC--CHHHHhhcCCCccEEEEec
Q 007482 7 FSKTTQALFY-NYKQL-PIQR--MLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHS--TVEAACAAHPMADVFINFS 80 (602)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~--~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~--sv~~i~~~~p~vDlavi~v 80 (602)
.+...++||| |..|+ +.+. ....||++++-++ .... -.|..+.|+|+++ ++.++..+. ++|.++|++
T Consensus 82 ~~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D-~d~~-----~~~~~i~g~~v~~~~~l~~li~~~-~iD~ViIa~ 154 (213)
T PRK05472 82 DRTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFD-VDPE-----KIGTKIGGIPVYHIDELEEVVKEN-DIEIGILTV 154 (213)
T ss_pred CCCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEE-CChh-----hcCCEeCCeEEcCHHHHHHHHHHC-CCCEEEEeC
Confidence 3456777775 23343 3333 2247888876554 3111 1124566777763 345544443 599999999
Q ss_pred CChhhHHHHHHHhhCCCCcEEEEecC
Q 007482 81 SFRSAAASSMAALKQPTIRVVAIIAE 106 (602)
Q Consensus 81 p~~~~~~~~~e~~~~~gv~~~viis~ 106 (602)
|... ...+.+.|.++|++.+..++.
T Consensus 155 P~~~-~~~i~~~l~~~Gi~~il~~~p 179 (213)
T PRK05472 155 PAEA-AQEVADRLVEAGIKGILNFAP 179 (213)
T ss_pred Cchh-HHHHHHHHHHcCCCEEeecCc
Confidence 9875 677888888899999998753
No 112
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some typ
Probab=94.26 E-value=0.11 Score=56.97 Aligned_cols=87 Identities=17% Similarity=0.075 Sum_probs=60.6
Q ss_pred HHHHHhhhcCC--CcccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchheeeeecC-
Q 007482 347 IISTISDDRGE--EPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARA- 423 (602)
Q Consensus 347 i~t~I~~~~g~--~i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~r~~ast- 423 (602)
..|+|+...|+ .+.|||+++.||..+. +|+++.|+||+|+-|++++.+-+..-|.- |..-+.. ...+..+.
T Consensus 37 ~~S~Is~idg~~G~L~YRGy~i~dLa~~~-sfEEva~LL~~G~lP~~~el~~f~~~L~~---~~~lp~~--v~~~i~~~p 110 (400)
T cd06114 37 CESAITYIDGEKGILRYRGYPIEQLAEKS-SFLEVCYLLLYGELPTAEQLQEFREEITR---HTLVHEQ--MKRFFNGFP 110 (400)
T ss_pred EeeeCeEEeCCCCEEEECCccHHHHHhcC-CHHHHHHHHHcCcCCCHHHHHHHHHHHHH---ccCCCHH--HHHHHHhcc
Confidence 44677877654 3679999999999998 99999999999988888777777776643 3333333 12223232
Q ss_pred -CCChHHHHHHhhccCC
Q 007482 424 -GKDLVSSLVSGLLTIG 439 (602)
Q Consensus 424 -~~~~~~av~agl~a~G 439 (602)
..++-..+.+++++++
T Consensus 111 ~~~~pm~~l~~~vs~l~ 127 (400)
T cd06114 111 RDAHPMAILSAMVNALS 127 (400)
T ss_pred cCCCHHHHHHHHHHHHh
Confidence 3567777777776654
No 113
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homo
Probab=94.21 E-value=0.23 Score=54.68 Aligned_cols=91 Identities=10% Similarity=-0.025 Sum_probs=65.3
Q ss_pred HHHHHHHhhhcCCC-cccCCCCCcccccCCC--------cHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccch
Q 007482 345 THIISTISDDRGEE-PCYAGVPMSSIVEQGY--------GVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAH 415 (602)
Q Consensus 345 ~~i~t~I~~~~g~~-i~~rg~dL~~li~~~~--------~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~ 415 (602)
....|+|+...|+. +.|||+++.||..+.- +|+++.|+||+|+-|++++.+.|...|. .|..-|..
T Consensus 44 ~~~~t~Is~iDg~~Gl~YRGy~I~dLa~~~~~~~~~~~~~fEev~yLLl~G~LPt~~el~~f~~~L~---~~~~lp~~-- 118 (426)
T cd06103 44 KGLVYETSVLDPDEGIRFRGKTIPECQELLPKADGGGEPLPEGLFWLLLTGEVPTEEQVDELSKEWA---KRAEVPSH-- 118 (426)
T ss_pred eeeeeeCeeEcCCCCeEECCccHHHHHhhCccccccCcCcHHHHHHHHHCCCCCCHHHHHHHHHHHH---HcCCCCHH--
Confidence 33457788876543 6799999999998751 2999999999999999988888888776 34433333
Q ss_pred heeeeecC--CCChHHHHHHhhccCCC
Q 007482 416 NTIVTARA--GKDLVSSLVSGLLTIGP 440 (602)
Q Consensus 416 a~r~~ast--~~~~~~av~agl~a~Gp 440 (602)
+..+.-+- ..+|-..+.+++++++.
T Consensus 119 v~~~i~~~p~~~hPM~~L~~~vs~L~~ 145 (426)
T cd06103 119 VVKMIDNLPRNLHPMTQLSAAILALQS 145 (426)
T ss_pred HHHHHHhCCCCCChHHHHHHHHHhccc
Confidence 22233333 35788889998888754
No 114
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=94.10 E-value=0.076 Score=55.30 Aligned_cols=95 Identities=18% Similarity=0.132 Sum_probs=66.7
Q ss_pred CCCCCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCCh
Q 007482 6 LFSKTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFR 83 (602)
Q Consensus 6 l~~p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~ 83 (602)
++.=++||||| |..|+ ...||.+.|.+++.|+- ++..- +.-.+-.|..+| +++|+.+ ..|++++.+|..
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr-~g~~s----~~kA~~dGf~V~-~v~ea~k---~ADvim~L~PDe 85 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLR-KGSSS----WKKAKEDGFKVY-TVEEAAK---RADVVMILLPDE 85 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEec-CCchh----HHHHHhcCCEee-cHHHHhh---cCCEEEEeCchh
Confidence 55667999997 67777 88999999999877873 53321 001356788988 6888766 479999999986
Q ss_pred hhHHHHHHHhhCCC--CcEEEEecCCCCH
Q 007482 84 SAAASSMAALKQPT--IRVVAIIAEGVPE 110 (602)
Q Consensus 84 ~~~~~~~e~~~~~g--v~~~viis~Gf~E 110 (602)
. -..+.+.-.+.. -..++.++-||+.
T Consensus 86 ~-q~~vy~~~I~p~Lk~G~aL~FaHGfNi 113 (338)
T COG0059 86 Q-QKEVYEKEIAPNLKEGAALGFAHGFNI 113 (338)
T ss_pred h-HHHHHHHHhhhhhcCCceEEeccccce
Confidence 4 455666322222 3458889999864
No 115
>PRK06091 membrane protein FdrA; Validated
Probab=94.06 E-value=14 Score=42.21 Aligned_cols=249 Identities=18% Similarity=0.132 Sum_probs=141.8
Q ss_pred CCCCcEEEEeeCCcH----HHHHHHhcCCeEEEEEeCC-CCCC-ccccccCceeecccccCCHHHHhhcCCCccEEEEec
Q 007482 7 FSKTTQALFYNYKQL----PIQRMLDFDFLCVAGIINP-GAEG-FQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFS 80 (602)
Q Consensus 7 ~~p~s~avv~g~~~~----~~~~~~~~g~~~V~gv~~p-~~~~-~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~v 80 (602)
+.|-.|++| +.+|. .+....+.|. |++|- +-++ +.+ +++.|+..-.-++- ..+.|+.++.++..
T Consensus 191 ~~~G~IgiV-SQSGtl~~~v~~~a~~~Gi----G~S~~Vs~Gn~Dls----~~~ggi~~~D~L~~-L~~DP~TkvIvly~ 260 (555)
T PRK06091 191 MPEGNIGVI-GASGTGIQELCSQIALAGE----GITHAIGLGGRDLS----AEVGGISALTALEM-LSADEKSEVIAFVS 260 (555)
T ss_pred CCCCCEEEE-eCcHHHHHHHHHHHHHcCC----CeEEEEECCCCccc----cccCCCCHHHHHHH-HhhCCCCcEEEEEE
Confidence 468889999 55555 3333444444 22221 1221 110 12334433333333 23345678888777
Q ss_pred --CChhhHHHHHHHhhCCCCcEEEEecCCCCHH-----------HHHHHHHHHHhCC-CeeEcCCcccccccCccccccc
Q 007482 81 --SFRSAAASSMAALKQPTIRVVAIIAEGVPEA-----------DTKQLIAYARSNN-KVVIGPATVGGIQAGAFKIGDT 146 (602)
Q Consensus 81 --p~~~~~~~~~e~~~~~gv~~~viis~Gf~E~-----------~~~~l~~~a~~~g-~riiGPNc~G~~~~~~~~l~~~ 146 (602)
|+.......++.+.+.+-+ +|++-.|-.+. ..+++.+.|.... ......+ +-+
T Consensus 261 kppaE~v~~~fl~aar~~~KP-VVvlk~Grs~~g~~q~GVi~a~tleEl~~~A~~la~~~~~~~~---~~~--------- 327 (555)
T PRK06091 261 KPPAEAVRLKIINAMKATGKP-VVALFLGYTPAVARDENVWFASTLDEAARLACLLSRVTAQRNA---ILP--------- 327 (555)
T ss_pred ecCchHHHHHHHHHHhhCCCC-EEEEEecCCchhhhcCCeEEeCCHHHHHHHHHHHhcccccccc---ccc---------
Confidence 3344446777777766655 55554554442 3456666665422 1111111 000
Q ss_pred CCcccccccccCCCCCcEEEEecChhHHHHHHHHHHhcCCcee----------------EEeeccCCCC------CCCCH
Q 007482 147 AGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIY----------------EGIAIGGDVF------PGSTL 204 (602)
Q Consensus 147 ~~~~~~~~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s----------------~~vs~Gn~~~------~dv~~ 204 (602)
...+.|==+--.|+|+.+.+ .+.+...++. .+|..|.+.| +.+|.
T Consensus 328 ------------~~~~~irGly~GGTL~~Ea~-~~~~~~~~~~~~~~~~~~~~l~~~~h~~iDlGdD~~T~GrpHPMIDp 394 (555)
T PRK06091 328 ------------VSQGFICGLYTGGTLAAEAA-GLLAGHLGVEADDEHHHGMMLDADGHQIIDLGDDFYTVGRPHPMIDP 394 (555)
T ss_pred ------------ccCCeeEEEecCchHHHHHH-HHHHhcCCCccCCcCCccceeecCCceEEecCcccccCCCCCCCcCh
Confidence 12233434455789999988 6655555543 3455555432 12333
Q ss_pred ---HHHHHHhhcCCCccEEEEEEecCCC---cH-HHHHHHHHhcC------CCCCEEEEEeCcCccCccccccccccCCc
Q 007482 205 ---SDHILRFNNIPQVKMMVVLGELGGR---DE-YSLVEALKQGK------VNKPVVAWVSGTCARLFKSEVQFGHAGAK 271 (602)
Q Consensus 205 ---~d~l~~l~~Dp~t~~I~ly~E~g~~---~~-~~f~~~~r~~~------~~KPVv~~k~Gr~~~g~~~~aa~sHtgal 271 (602)
.+.|.-..+||+|.+|++=+.+|.. || ..++.++++++ +.-+||+.-.|+-..- |.
T Consensus 395 ~~R~~~~~~~a~dp~~~VillD~vlGyGah~dpa~~l~~ai~~~~~~~~~~r~l~~v~~v~GT~~Dp--Q~--------- 463 (555)
T PRK06091 395 TLRNQLIADLGAKPQVRVLLLDVVIGFGATADPAGSLVSAIQKACAARADGQPLYAIATVTGTERDP--QC--------- 463 (555)
T ss_pred HHHHHHHHHhccCCcceEEEEEeeeccCCCCChHHHHHHHHHHHHhhhhcCCceEEEEEEeCCCCCC--cC---------
Confidence 3566667889999999999997773 44 35666655532 3357888888866543 22
Q ss_pred CCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHHH
Q 007482 272 SGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFE 309 (602)
Q Consensus 272 ag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~~ 309 (602)
. .--.+.|+++|+++++|-.+...++..+..
T Consensus 464 ---~----~~q~~~L~~aGv~v~~sn~~a~~~a~~~~~ 494 (555)
T PRK06091 464 ---R----SQQIATLEDAGIAVVDSLPEATLLAAALIR 494 (555)
T ss_pred ---H----HHHHHHHHhCCeEEEcCcHHHHHHHHHHhh
Confidence 1 344588999999999999999998887773
No 116
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=93.91 E-value=0.18 Score=52.98 Aligned_cols=113 Identities=10% Similarity=0.017 Sum_probs=66.2
Q ss_pred CcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhHH
Q 007482 10 TTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAA 87 (602)
Q Consensus 10 ~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~ 87 (602)
++|++|| |..|. +.++|.+.|++++ +.+ .... +.+.+- -.|...+.|++|+.+...+.|++++++|.. .+.
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~-~~d-r~~~-~~~~l~---~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~ 73 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCV-GYD-HDQD-AVKAMK---EDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVD 73 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEE-EEE-CCHH-HHHHHH---HcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHH
Confidence 3688886 43343 8889999999863 233 2111 111111 135566778887654322469999999997 688
Q ss_pred HHHHHhhCC-CCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEc
Q 007482 88 SSMAALKQP-TIRVVAIIAEGVPEADTKQLIAYARSNNKVVIG 129 (602)
Q Consensus 88 ~~~e~~~~~-gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiG 129 (602)
++++.+... .-..+||-.+.-.+....++.+.+++.|++.+.
T Consensus 74 ~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vd 116 (298)
T TIGR00872 74 AVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLD 116 (298)
T ss_pred HHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEe
Confidence 888877532 112344444433333455556667778876544
No 117
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like. 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxaloacetate (OAA) to form 2-methylcitrate and CoA. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with OAA to form citrate and CoA, the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the a
Probab=93.76 E-value=0.23 Score=54.81 Aligned_cols=93 Identities=10% Similarity=0.005 Sum_probs=64.1
Q ss_pred cHHHHHHHhhhcCCC-cccCCCCCcccccC-------CCcH--HHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCcc
Q 007482 344 PTHIISTISDDRGEE-PCYAGVPMSSIVEQ-------GYGV--GDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSG 413 (602)
Q Consensus 344 ~~~i~t~I~~~~g~~-i~~rg~dL~~li~~-------~~~~--~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st 413 (602)
.....|+++...|+. +.|||+++.||..+ . +| +++.|+||+|+-|++++.+.|..-|.-+. .-|..
T Consensus 43 v~~~~t~is~idg~~Gl~YRGy~I~dLa~~~~~~~~~~-~f~~Eev~yLLl~G~LPt~~el~~f~~~L~~~~---~lp~~ 118 (428)
T cd06106 43 LKSMLWEGSVLDAEEGIRFHGKTIPECQKELPKAPIGG-EMLPESMLWLLLTGKVPTFEQARGLSKELAERG---KLPHY 118 (428)
T ss_pred CeeeeecCeEECCCCCeeECCCcHHHHHhhCccccccC-CccHHHHHHHHHcCcCCCHHHHHHHHHHHHHcC---CCCHH
Confidence 334556677765444 78999999999987 4 67 89999999999999888888888766443 22222
Q ss_pred chheeeeecCCCChHHHHHHhhccCCC
Q 007482 414 AHNTIVTARAGKDLVSSLVSGLLTIGP 440 (602)
Q Consensus 414 ~~a~r~~ast~~~~~~av~agl~a~Gp 440 (602)
+....-.-...++|-..+.+++++++.
T Consensus 119 v~~~i~~~p~~~hPM~~L~~~vs~L~~ 145 (428)
T cd06106 119 IEKLLDSLPKTLHPMTQLSIGVAALNH 145 (428)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhccc
Confidence 122111223345888888898888863
No 118
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=93.67 E-value=0.19 Score=52.41 Aligned_cols=100 Identities=10% Similarity=-0.006 Sum_probs=66.4
Q ss_pred HHHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhHHHHH---HHhh-CC
Q 007482 21 LPIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSM---AALK-QP 96 (602)
Q Consensus 21 ~~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~~---e~~~-~~ 96 (602)
.+.++|.+.|+++. ..+ +... +.+.+ .-.|.....|..++.. +.|+++++||....+..++ +.+. ..
T Consensus 10 ~mA~~L~~~G~~V~-v~d-r~~~-~~~~l---~~~g~~~~~s~~~~~~---~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 10 PMAANLLKAGHPVR-VFD-LFPD-AVEEA---VAAGAQAAASPAEAAE---GADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred HHHHHHHhCCCeEE-EEe-CCHH-HHHHH---HHcCCeecCCHHHHHh---cCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 38889999999852 333 3221 11111 1135667788888765 4799999999865566666 3332 12
Q ss_pred CCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEc
Q 007482 97 TIRVVAIIAEGVPEADTKQLIAYARSNNKVVIG 129 (602)
Q Consensus 97 gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiG 129 (602)
.-+.++|..+++.....+++.+.++++|++++.
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vd 113 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAVFMD 113 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 234577778888888888899999999988655
No 119
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=93.57 E-value=0.074 Score=50.78 Aligned_cols=92 Identities=14% Similarity=0.086 Sum_probs=58.1
Q ss_pred CCCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCC-CCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChh
Q 007482 8 SKTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGA-EGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRS 84 (602)
Q Consensus 8 ~p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~-~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~ 84 (602)
.-++|||+| |..|+ ...||.+.|.+++.|.. ++. .-++ .+-.|..++ +++|+.+ +.|++++++|..
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr-~~s~s~~~-----A~~~Gf~v~-~~~eAv~---~aDvV~~L~PD~- 71 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLR-EGSASWEK-----AKADGFEVM-SVAEAVK---KADVVMLLLPDE- 71 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE--TTCHHHHH-----HHHTT-ECC-EHHHHHH---C-SEEEE-S-HH-
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCCCEEEEec-CCCcCHHH-----HHHCCCeec-cHHHHHh---hCCEEEEeCChH-
Confidence 457889885 44455 88999999999876774 633 1111 356788888 6788766 479999999875
Q ss_pred hHHHHH-HHhh-CCCCcEEEEecCCCCH
Q 007482 85 AAASSM-AALK-QPTIRVVAIIAEGVPE 110 (602)
Q Consensus 85 ~~~~~~-e~~~-~~gv~~~viis~Gf~E 110 (602)
.-.++. +++. ...-..+++++.||+.
T Consensus 72 ~q~~vy~~~I~p~l~~G~~L~fahGfni 99 (165)
T PF07991_consen 72 VQPEVYEEEIAPNLKPGATLVFAHGFNI 99 (165)
T ss_dssp HHHHHHHHHHHHHS-TT-EEEESSSHHH
T ss_pred HHHHHHHHHHHhhCCCCCEEEeCCcchh
Confidence 355554 3333 2446679999999975
No 120
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=93.53 E-value=0.56 Score=49.90 Aligned_cols=111 Identities=14% Similarity=0.005 Sum_probs=66.0
Q ss_pred CCcEEEEe-eCCcH-HHHHHHh-cCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhh
Q 007482 9 KTTQALFY-NYKQL-PIQRMLD-FDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSA 85 (602)
Q Consensus 9 p~s~avv~-g~~~~-~~~~~~~-~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~ 85 (602)
+-.++||| |..|+ +++.+.+ -++++|+.+. ....... .+-.++..+.+..++. +++|++++|+|....
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~d-r~~~~~~-----~~~~~v~~~~d~~e~l---~~iDVViIctPs~th 73 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFS-RRGAETL-----DTETPVYAVADDEKHL---DDVDVLILCMGSATD 73 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEc-CCcHHHH-----hhcCCccccCCHHHhc---cCCCEEEEcCCCccC
Confidence 45778776 44455 6666665 4788876655 3211111 1112333333554443 368999999998777
Q ss_pred HHHHHHHhhCCCCcEEEEecCCCC-HHHHHHHHHHHHh-CCCeeEc
Q 007482 86 AASSMAALKQPTIRVVAIIAEGVP-EADTKQLIAYARS-NNKVVIG 129 (602)
Q Consensus 86 ~~~~~e~~~~~gv~~~viis~Gf~-E~~~~~l~~~a~~-~g~riiG 129 (602)
.+.+.+++. +|+..+...--.-. ....++|-+.|++ .++.++|
T Consensus 74 ~~~~~~~L~-aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~ 118 (324)
T TIGR01921 74 IPEQAPYFA-QFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVIS 118 (324)
T ss_pred HHHHHHHHH-cCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 777777665 78874443221111 2256778888887 5788888
No 121
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=93.30 E-value=0.26 Score=52.26 Aligned_cols=94 Identities=17% Similarity=0.098 Sum_probs=62.2
Q ss_pred CCCCCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCCh
Q 007482 6 LFSKTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFR 83 (602)
Q Consensus 6 l~~p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~ 83 (602)
.+.-++++||| |..|+ +.+||.++|++++.+.. +.+..++ .+..|..++ |++|+.+ +.|++++++|..
T Consensus 13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r-~~~s~~~-----A~~~G~~v~-sl~Eaak---~ADVV~llLPd~ 82 (335)
T PRK13403 13 LLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVR-PGKSFEV-----AKADGFEVM-SVSEAVR---TAQVVQMLLPDE 82 (335)
T ss_pred hhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEEC-cchhhHH-----HHHcCCEEC-CHHHHHh---cCCEEEEeCCCh
Confidence 45667899997 65566 88999999999864443 3221100 123456554 8999876 479999999976
Q ss_pred hhHHHHHH--HhhCCCCcEEEEecCCCCH
Q 007482 84 SAAASSMA--ALKQPTIRVVAIIAEGVPE 110 (602)
Q Consensus 84 ~~~~~~~e--~~~~~gv~~~viis~Gf~E 110 (602)
.. ..++. ......-..++++|-||+.
T Consensus 83 ~t-~~V~~~eil~~MK~GaiL~f~hgfni 110 (335)
T PRK13403 83 QQ-AHVYKAEVEENLREGQMLLFSHGFNI 110 (335)
T ss_pred HH-HHHHHHHHHhcCCCCCEEEECCCcce
Confidence 54 45543 2333345578999999963
No 122
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=92.99 E-value=0.37 Score=53.87 Aligned_cols=115 Identities=10% Similarity=0.020 Sum_probs=67.3
Q ss_pred EEEEe-e-CCcHHHHHHHhcCCeEEEEEeCCCCCCccccccCcee--ecccccCCHHHHhhcCCCccEEEEecCChhhHH
Q 007482 12 QALFY-N-YKQLPIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEE--IAIPVHSTVEAACAAHPMADVFINFSSFRSAAA 87 (602)
Q Consensus 12 ~avv~-g-~~~~~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v--~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~ 87 (602)
+.+|| | ++..+.+||.+.||+++ ..+ .... +.+.+..... .++..+.|++|+.....++|+++++||+...++
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V~-v~d-rt~~-~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~ 78 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTVS-VYN-RTPE-KTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVD 78 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeEE-EEe-CCHH-HHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHH
Confidence 56776 4 44448999999999862 333 2111 1111110000 135678889887643224699999999976788
Q ss_pred HHHHHhhCC-CCcEEEEecC-CCCHHHHHHHHHHHHhCCCeeEcC
Q 007482 88 SSMAALKQP-TIRVVAIIAE-GVPEADTKQLIAYARSNNKVVIGP 130 (602)
Q Consensus 88 ~~~e~~~~~-gv~~~viis~-Gf~E~~~~~l~~~a~~~g~riiGP 130 (602)
++++.+... .-..+||=.+ ..++ +..+..+.++++|++.++-
T Consensus 79 ~Vi~~l~~~L~~g~iIID~gns~~~-~t~~~~~~l~~~gi~fvda 122 (467)
T TIGR00873 79 AVINQLLPLLEKGDIIIDGGNSHYP-DTERRYKELKAKGILFVGS 122 (467)
T ss_pred HHHHHHHhhCCCCCEEEECCCcCHH-HHHHHHHHHHhcCCEEEcC
Confidence 888876532 1223444333 3444 3344456677888887765
No 123
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=92.96 E-value=0.4 Score=49.92 Aligned_cols=110 Identities=6% Similarity=-0.003 Sum_probs=66.8
Q ss_pred cEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhHHH
Q 007482 11 TQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAAS 88 (602)
Q Consensus 11 s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~ 88 (602)
+|+||| |..|. +.+++.+.|++++ +.+ ++.. +.+.+ .-.|.....+..++.. +.|++++++|....+..
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~-~~d-r~~~-~~~~~---~~~g~~~~~~~~~~~~---~aDivi~~vp~~~~~~~ 71 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLH-VTT-IGPE-VADEL---LAAGAVTAETARQVTE---QADVIFTMVPDSPQVEE 71 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEE-EEc-CCHH-HHHHH---HHCCCcccCCHHHHHh---cCCEEEEecCCHHHHHH
Confidence 477886 44455 7888999999853 333 3221 01111 1135556778888765 47999999998654555
Q ss_pred HH---HHhhCC-CCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEc
Q 007482 89 SM---AALKQP-TIRVVAIIAEGVPEADTKQLIAYARSNNKVVIG 129 (602)
Q Consensus 89 ~~---e~~~~~-gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiG 129 (602)
++ +.+... .-..++|-++.......+++.+.+++.|+.++.
T Consensus 72 v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~ 116 (291)
T TIGR01505 72 VAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLD 116 (291)
T ss_pred HHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEe
Confidence 54 223211 122455555666666777888888888877665
No 124
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=92.79 E-value=0.73 Score=46.29 Aligned_cols=112 Identities=13% Similarity=0.103 Sum_probs=71.4
Q ss_pred cEEEEe-eCCcHHHHHHHhcC---CeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhH
Q 007482 11 TQALFY-NYKQLPIQRMLDFD---FLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAA 86 (602)
Q Consensus 11 s~avv~-g~~~~~~~~~~~~g---~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~ 86 (602)
++.+|| |+-|+.+-.+++.| ++.++- |=....+.++. ..-.+.+|-.++.|..+ ++|++|=+.+++. +
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v--~D~~~ek~~~~--~~~~~~~~~s~ide~~~---~~DlvVEaAS~~A-v 73 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAV--YDRDEEKAKEL--EASVGRRCVSDIDELIA---EVDLVVEAASPEA-V 73 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEE--ecCCHHHHHHH--HhhcCCCccccHHHHhh---ccceeeeeCCHHH-H
Confidence 577887 66677666666655 664322 21111121211 22344555588888764 5899998887765 5
Q ss_pred HHHHHHhhCCCCcEEEEecCCCCHH-HHHHHHHHHHhCCCeeEcC
Q 007482 87 ASSMAALKQPTIRVVAIIAEGVPEA-DTKQLIAYARSNNKVVIGP 130 (602)
Q Consensus 87 ~~~~e~~~~~gv~~~viis~Gf~E~-~~~~l~~~a~~~g~riiGP 130 (602)
......+-++|+..+|+-.+-++|. +.+++.+.|+..|-|+-=|
T Consensus 74 ~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~p 118 (255)
T COG1712 74 REYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLP 118 (255)
T ss_pred HHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCCcEEEec
Confidence 5544444458999777766668866 7788999999888876555
No 125
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=92.76 E-value=0.61 Score=48.15 Aligned_cols=112 Identities=13% Similarity=0.094 Sum_probs=71.3
Q ss_pred CcEEEEe-eCCcHHHHHHHhcC----CeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChh
Q 007482 10 TTQALFY-NYKQLPIQRMLDFD----FLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRS 84 (602)
Q Consensus 10 ~s~avv~-g~~~~~~~~~~~~g----~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~ 84 (602)
+.++||| |.-|+.+.+.+..+ ++++ .| |-+...+.+.+.+ ..+++.+++++... ++|++|=|.++.
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~-~V-~~~~~~~~~~~~~----~~~~~~~l~~ll~~--~~DlVVE~A~~~- 73 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLA-AL-TRNAADLPPALAG----RVALLDGLPGLLAW--RPDLVVEAAGQQ- 73 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEE-EE-ecCCHHHHHHhhc----cCcccCCHHHHhhc--CCCEEEECCCHH-
Confidence 5688886 56677444444433 5553 44 3322111112211 27899999997554 479999888775
Q ss_pred hHHHHHHHhhCCCCcEEEEecCCCCHH-HHHHHHHHHHhCCCeeEcC
Q 007482 85 AAASSMAALKQPTIRVVAIIAEGVPEA-DTKQLIAYARSNNKVVIGP 130 (602)
Q Consensus 85 ~~~~~~e~~~~~gv~~~viis~Gf~E~-~~~~l~~~a~~~g~riiGP 130 (602)
++.+.-+.+-++|...+++-.+-|... ..++|.+.|+++|-+|.=|
T Consensus 74 av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ip 120 (267)
T PRK13301 74 AIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVP 120 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEe
Confidence 466666666667888655533557754 7899999999998876555
No 126
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic. This model includes both mitochondrial and peroxisomal forms of citrate synthase. Citrate synthase is the entry point to the TCA cycle from acetyl-CoA. Peroxisomal forms, such as SP:P08679 from yeast (recognized by the C-terminal targeting motif SKL) act in the glyoxylate cycle. Eukaryotic homologs excluded by the high trusted cutoff of this model include a Tetrahymena thermophila citrate synthase that doubles as a filament protein, a putative citrate synthase from Plasmodium falciparum (no TCA cycle), and a methylcitrate synthase from Aspergillus nidulans.
Probab=92.63 E-value=0.093 Score=57.74 Aligned_cols=93 Identities=8% Similarity=0.019 Sum_probs=67.1
Q ss_pred ccCcHHHHHHHhhhcCCC-cccCCCCCccc---ccCCCc------HHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCC
Q 007482 341 VRAPTHIISTISDDRGEE-PCYAGVPMSSI---VEQGYG------VGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPC 410 (602)
Q Consensus 341 i~~~~~i~t~I~~~~g~~-i~~rg~dL~~l---i~~~~~------~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~ 410 (602)
.+-.....|++|...|++ +.|||+++.|+ +.+. + |++++|+||+|+-|++++.+-|..-|.- |+.-
T Consensus 43 lrgv~~~~t~iS~iD~~~Gl~yRGy~I~dl~~~~~~~-~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~---~~~l 118 (427)
T TIGR01793 43 MRGMKGLVWETSVLDPEEGIRFRGLSIPECQKLLPKA-KGGEEPLPEGLLWLLLTGKVPSEEQVDALSAEWRA---RADL 118 (427)
T ss_pred cCCCcccceeceEEcCCCCeEECCeeHHHHHHHhccC-CccccCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCCC
Confidence 333446777888876654 78999999996 5565 6 9999999999999999888888887743 3333
Q ss_pred CccchheeeeecCC--CChHHHHHHhhccCC
Q 007482 411 VSGAHNTIVTARAG--KDLVSSLVSGLLTIG 439 (602)
Q Consensus 411 ~st~~a~r~~ast~--~~~~~av~agl~a~G 439 (602)
|.. +..+..+.+ .+|-..+.+++++++
T Consensus 119 p~~--v~~~i~~~p~~~hPM~~L~~~vsaL~ 147 (427)
T TIGR01793 119 PEH--VYKTIDALPVTLHPMAQFATAVMALQ 147 (427)
T ss_pred CHH--HHHHHHhCCCCCCHHHHHHHHHHhcc
Confidence 333 223333333 578888888888875
No 127
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=92.63 E-value=0.47 Score=49.45 Aligned_cols=109 Identities=11% Similarity=0.055 Sum_probs=66.0
Q ss_pred CcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhHH
Q 007482 10 TTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAA 87 (602)
Q Consensus 10 ~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~ 87 (602)
++|+||| |..|. +.+++.+.|++++ +.+ +.... .+.+ .-.|.....+.+++.. +.|++++++|....+.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~-~~d-~~~~~-~~~~---~~~g~~~~~~~~e~~~---~~d~vi~~vp~~~~~~ 73 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLV-VYD-RNPEA-VAEV---IAAGAETASTAKAVAE---QCDVIITMLPNSPHVK 73 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEE-EEc-CCHHH-HHHH---HHCCCeecCCHHHHHh---cCCEEEEeCCCHHHHH
Confidence 4688886 44444 7888888998853 333 32210 0011 1135667778888765 4799999999765555
Q ss_pred HHH---HHhhC-CCCcEEEEecCCCCHHHHHHHHHHHHhCCCee
Q 007482 88 SSM---AALKQ-PTIRVVAIIAEGVPEADTKQLIAYARSNNKVV 127 (602)
Q Consensus 88 ~~~---e~~~~-~gv~~~viis~Gf~E~~~~~l~~~a~~~g~ri 127 (602)
.++ +.+.. ..-..+++-++.++....+++.+.+++.|+++
T Consensus 74 ~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~ 117 (296)
T PRK11559 74 EVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEM 117 (296)
T ss_pred HHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcE
Confidence 554 22221 12234555566667667778888887776553
No 128
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=92.11 E-value=0.44 Score=50.57 Aligned_cols=115 Identities=17% Similarity=0.114 Sum_probs=66.8
Q ss_pred CCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhH
Q 007482 9 KTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAA 86 (602)
Q Consensus 9 p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~ 86 (602)
-+++++|| |..|. +.++|++.|++++.+.. +.... .+.. .-.|+.++ +..++.+ +.|+++++||+....
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~-~~~~~-~~~a---~~~Gv~~~-s~~ea~~---~ADiVvLaVpp~~~~ 73 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSGLNVIVGLR-KGGAS-WKKA---TEDGFKVG-TVEEAIP---QADLIMNLLPDEVQH 73 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCCCeEEEEEC-cChhh-HHHH---HHCCCEEC-CHHHHHh---cCCEEEEeCCcHhHH
Confidence 36788886 44444 88999999988654443 32111 1111 02355555 5777654 479999999997345
Q ss_pred HHHHHHhhC-CCCcEEEEecCCCCHHHHHHHHHHHH-hCCCeeEcCCcccc
Q 007482 87 ASSMAALKQ-PTIRVVAIIAEGVPEADTKQLIAYAR-SNNKVVIGPATVGG 135 (602)
Q Consensus 87 ~~~~e~~~~-~gv~~~viis~Gf~E~~~~~l~~~a~-~~g~riiGPNc~G~ 135 (602)
..+.+++.. ..-+.+|.++.||+-...+. ... ...+-.+=||+.|.
T Consensus 74 ~~v~~ei~~~l~~g~iVs~aaG~~i~~~~~---~~~~~~~VvrvmPn~p~~ 121 (314)
T TIGR00465 74 EVYEAEIQPLLKEGKTLGFSHGFNIHFVQI---VPPKDVDVVMVAPKGPGT 121 (314)
T ss_pred HHHHHHHHhhCCCCcEEEEeCCccHhhccc---cCCCCCcEEEECCCCCcH
Confidence 555655542 11235899999998653221 111 12344566776654
No 129
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site []. The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH []. This entry represents types I and II citrate synthase enzymes, as well as the related enzymes 2-methylcitrate synthase and ATP citrate synthase. 2-methylcitrate (2.3.3.5 from EC) synthase catalyses the conversion of oxaloacetate and propanoyl-CoA into (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate and coenzyme A. This enzyme is induced during bacterial growth on propionate, while type II hexameric citrate synthase is constitutive []. ATP citrate synthase (2.3.3.8 from EC) (also known as ATP citrate lyase) catalyses the MgATP-dependent, CoA-dependent cleavage of citrate into oxaloacetate and acetyl-CoA, a key step in the reductive tricarboxylic acid pathway of CO2 assimilation used by a variety of autotrophic bacteria and archaea to fix carbon dioxide []. ATP citrate synthase is composed of two distinct subunits. In eukaryotes, ATP citrate synthase is a homotetramer of a single large polypeptide, and is used to produce cytosolic acetyl-CoA from mitochondrial produced citrate [].; GO: 0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, 0044262 cellular carbohydrate metabolic process; PDB: 2C6X_D 3L96_B 1OWB_B 1NXG_A 1K3P_A 1OWC_B 3L97_B 1NXE_A 3L98_A 3L99_A ....
Probab=91.84 E-value=0.038 Score=59.62 Aligned_cols=84 Identities=15% Similarity=0.169 Sum_probs=57.4
Q ss_pred HHHhhhcCCC--cccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHHHHHHhcCCCCCCccchheeeeecC--C
Q 007482 349 STISDDRGEE--PCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARA--G 424 (602)
Q Consensus 349 t~I~~~~g~~--i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~Lvl~aDHg~~~st~~a~r~~ast--~ 424 (602)
|+|+...++. +.|||+++.||+++. +|+++.|+||+|+-|++++.+.++..|.-. .. .+- ...++..+. .
T Consensus 10 T~Is~id~~~G~L~YRGy~i~dL~~~~-sfeeva~LL~~g~lP~~~el~~f~~~l~~~---~~-lpe-~v~~~i~~lp~~ 83 (356)
T PF00285_consen 10 TSISFIDGEKGILRYRGYDIEDLAENA-SFEEVAYLLWYGELPTAEELEEFSAELKER---RA-LPE-EVIEVIEALPRD 83 (356)
T ss_dssp ESSEEEETTTTEEEETTEEHHHHHHHS-BHHHHHHHHHHSS--BHHHHHHHHHHHHCT---TS---H-HHHHHHHCSTTT
T ss_pred eeCeEEeCCCCEEEEcCeEHHHHHhcC-CHHHHHHHHHhccCCChhhhccchhHHHhh---cc-hhH-HHHHHHhhcCCC
Confidence 5567766665 899999999999977 999999999999999988888888876632 22 222 233344333 3
Q ss_pred CChHHHHHHhhccC
Q 007482 425 KDLVSSLVSGLLTI 438 (602)
Q Consensus 425 ~~~~~av~agl~a~ 438 (602)
+++-..+.+++.++
T Consensus 84 ~~pm~~L~~~vs~l 97 (356)
T PF00285_consen 84 AHPMDVLRAAVSAL 97 (356)
T ss_dssp S-HHHHHHHHHHHH
T ss_pred CCchHHHHHHHhhh
Confidence 45666666666665
No 130
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=91.81 E-value=0.73 Score=48.26 Aligned_cols=109 Identities=11% Similarity=-0.002 Sum_probs=66.8
Q ss_pred cEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhHHH
Q 007482 11 TQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAAS 88 (602)
Q Consensus 11 s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~ 88 (602)
++++|| |..|. +.++|.+.|+++ ...+ +... +.+.+. -.|.....|..++.. +.|++++++|....+..
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V-~v~d-~~~~-~~~~~~---~~g~~~~~s~~~~~~---~aDvVi~~vp~~~~~~~ 73 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQL-QVFD-VNPQ-AVDALV---DKGATPAASPAQAAA---GAEFVITMLPNGDLVRS 73 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeE-EEEc-CCHH-HHHHHH---HcCCcccCCHHHHHh---cCCEEEEecCCHHHHHH
Confidence 688886 44444 888999999875 2343 3221 111111 135667788888765 47999999999765666
Q ss_pred HHHHh---h-CCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeE
Q 007482 89 SMAAL---K-QPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVI 128 (602)
Q Consensus 89 ~~e~~---~-~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~rii 128 (602)
++... . ...-..++|-++-+.....+++.+..+++|++++
T Consensus 74 vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~l 117 (296)
T PRK15461 74 VLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMM 117 (296)
T ss_pred HHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEE
Confidence 65421 1 1112234454555555577788888888888754
No 131
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.70 E-value=0.32 Score=51.56 Aligned_cols=117 Identities=12% Similarity=-0.033 Sum_probs=64.3
Q ss_pred CCcEEEEe-eCCcH-HHHHHHhcCCeE-EEEEeCCCCCCccccc--cCceeec------ccccCCHHHHhhcCCCccEEE
Q 007482 9 KTTQALFY-NYKQL-PIQRMLDFDFLC-VAGIINPGAEGFQKLF--FGQEEIA------IPVHSTVEAACAAHPMADVFI 77 (602)
Q Consensus 9 p~s~avv~-g~~~~-~~~~~~~~g~~~-V~gv~~p~~~~~~~~~--~g~~v~G------~~~y~sv~~i~~~~p~vDlav 77 (602)
.++++|+| |..|. ...+|.+.|+++ ++..+ +.+....... .+..+.| +....+.+|+.+ +.|+++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~-~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~---~aD~Vi 79 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARR-PEFAAALAAERENREYLPGVALPAELYPTADPEEALA---GADFAV 79 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCC-HHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHc---CCCEEE
Confidence 46789997 44444 777888889875 22221 2110000000 0000113 345567777544 479999
Q ss_pred EecCChhhHHHHHHHhhCCCCcEEEEecCCCCHHH--HHHHHHHHHh---CCCe-eEcCCc
Q 007482 78 NFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEAD--TKQLIAYARS---NNKV-VIGPAT 132 (602)
Q Consensus 78 i~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~--~~~l~~~a~~---~g~r-iiGPNc 132 (602)
+++|... +.++++.+. .+. .++.++.|+.... .+++.+...+ .++. +.|||.
T Consensus 80 ~~v~~~~-~~~v~~~l~-~~~-~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~ 137 (328)
T PRK14618 80 VAVPSKA-LRETLAGLP-RAL-GYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNH 137 (328)
T ss_pred EECchHH-HHHHHHhcC-cCC-EEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccH
Confidence 9999975 677887765 343 4565677875332 3344444444 4443 556654
No 132
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=91.59 E-value=1.7 Score=43.70 Aligned_cols=101 Identities=19% Similarity=0.178 Sum_probs=68.2
Q ss_pred CCcHHHHHHHhcCCeE--EEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhHHHHHHHhhC
Q 007482 18 YKQLPIQRMLDFDFLC--VAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQ 95 (602)
Q Consensus 18 ~~~~~~~~~~~~g~~~--V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~~e~~~~ 95 (602)
.+.|.+.|+.++.... |.-+.+|..- ++.. ...++.+++.|+.|++|...-.+.....+.+.|.+
T Consensus 8 yGeR~~~~i~~~~~~~~~v~~~~~p~~l--------~efI-----d~pee~Lp~i~~~Dl~I~y~lHPDl~~~l~~~~~e 74 (217)
T PF02593_consen 8 YGERVIENIKNYFDFCRSVIVYEIPEDL--------PEFI-----DDPEEYLPKIPEADLLIAYGLHPDLTYELPEIAKE 74 (217)
T ss_pred chHHHHHHHHhcCCCCceEEEEeCCccc--------cccc-----cChHHHccCCCCCCEEEEeccCchhHHHHHHHHHH
Confidence 5666999998855444 5455556321 1211 12233344455689999855455556778888888
Q ss_pred CCCcEEEEecCCCCH-HHHHHHHHHHHhCCCeeEcCCc
Q 007482 96 PTIRVVAIIAEGVPE-ADTKQLIAYARSNNKVVIGPAT 132 (602)
Q Consensus 96 ~gv~~~viis~Gf~E-~~~~~l~~~a~~~g~riiGPNc 132 (602)
+|+|++|+ .++-+. .+.+++.+.+++.|+.+.-|.-
T Consensus 75 ~g~kavIv-p~~~~~~g~~~~lk~~~e~~gi~~~~P~~ 111 (217)
T PF02593_consen 75 AGVKAVIV-PSESPKPGLRRQLKKQLEEFGIEVEFPKP 111 (217)
T ss_pred cCCCEEEE-ecCCCccchHHHHHHHHHhcCceeecCcc
Confidence 99997765 555555 4788999999999999999974
No 133
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=91.10 E-value=0.81 Score=51.08 Aligned_cols=111 Identities=11% Similarity=-0.023 Sum_probs=68.8
Q ss_pred CcHHHHHHHhcCCeEEEEEeCCCCCCccccccC--ceeecccccCCHHHHhhcCCCccEEEEecCChhhHHHHHHHhhCC
Q 007482 19 KQLPIQRMLDFDFLCVAGIINPGAEGFQKLFFG--QEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQP 96 (602)
Q Consensus 19 ~~~~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g--~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~~e~~~~~ 96 (602)
+..+.+||++.||+++ ..+ .... +.+.+-. ..-.|...+.|++|+.....++|+++++||....++++++.+...
T Consensus 2 G~~mA~nL~~~G~~V~-v~n-rt~~-~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~ 78 (459)
T PRK09287 2 GKNLALNIASHGYTVA-VYN-RTPE-KTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPL 78 (459)
T ss_pred cHHHHHHHHhCCCeEE-EEC-CCHH-HHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhc
Confidence 3447899999999962 222 2111 1111110 001357788999998764323699999999988889888765532
Q ss_pred -CCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCc
Q 007482 97 -TIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPAT 132 (602)
Q Consensus 97 -gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc 132 (602)
.-..++|=.+-..-.+.++..+.++++|++.++---
T Consensus 79 l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapV 115 (459)
T PRK09287 79 LEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGV 115 (459)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCC
Confidence 123344444433334556666788889999887643
No 134
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=90.87 E-value=0.82 Score=55.70 Aligned_cols=106 Identities=17% Similarity=0.196 Sum_probs=65.2
Q ss_pred ccc-cCCHHHHhhcCCCccEEEEecCChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCcccc
Q 007482 57 IPV-HSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGG 135 (602)
Q Consensus 57 ~~~-y~sv~~i~~~~p~vDlavi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc~G~ 135 (602)
++. |.+.+++.....++|++|+++|... -..+.++|.+.|+.. +..+ +-....++|.+.|+++|+.++- . +|
T Consensus 632 v~lDv~D~e~L~~~v~~~DaVIsalP~~~-H~~VAkaAieaGkHv-v~ek--y~~~e~~~L~e~Ak~AGV~~m~-e-~G- 704 (1042)
T PLN02819 632 VQLDVSDSESLLKYVSQVDVVISLLPASC-HAVVAKACIELKKHL-VTAS--YVSEEMSALDSKAKEAGITILC-E-MG- 704 (1042)
T ss_pred EEeecCCHHHHHHhhcCCCEEEECCCchh-hHHHHHHHHHcCCCE-EECc--CCHHHHHHHHHHHHHcCCEEEE-C-Cc-
Confidence 344 6676666442114899999999975 577888888899864 4333 5556788999999999988552 2 33
Q ss_pred cccCcccccccCCcccccccccCCCCCc-EEEEecChhHH
Q 007482 136 IQAGAFKIGDTAGTIDNIIHCKLYRPGS-VGFVSKSGGMS 174 (602)
Q Consensus 136 ~~~~~~~l~~~~~~~~~~~p~~~~~~G~-valvSQSG~l~ 174 (602)
++|+-..+ -+. ........+-|. ..+.|..|++-
T Consensus 705 lDPGid~~---lA~--~~Id~~~~~~GkI~s~~s~~GGLP 739 (1042)
T PLN02819 705 LDPGIDHM---MAM--KMIDDAHERGGKVKSFTSYCGGLP 739 (1042)
T ss_pred cCHHHHHH---HHH--HHHHhhcccCCcEEEEEEEEcCcc
Confidence 56654121 000 000000012243 46888888886
No 135
>PRK06349 homoserine dehydrogenase; Provisional
Probab=90.62 E-value=1.5 Score=48.54 Aligned_cols=73 Identities=12% Similarity=0.075 Sum_probs=46.4
Q ss_pred eecccccCCHHHHhhcCCCccEEEEecCChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeE
Q 007482 54 EIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVI 128 (602)
Q Consensus 54 v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~rii 128 (602)
..+...|.+.+|+... +++|++|.+++.........++|-++|.. +|.-.-..-...-++|.++|+++|+.+.
T Consensus 55 ~~~~~~~~d~~~ll~d-~~iDvVve~tg~~~~~~~~~~~aL~~Gkh-VVtaNK~~~a~~~~eL~~lA~~~gv~l~ 127 (426)
T PRK06349 55 LPGILLTTDPEELVND-PDIDIVVELMGGIEPARELILKALEAGKH-VVTANKALLAVHGAELFAAAEEKGVDLY 127 (426)
T ss_pred CcccceeCCHHHHhhC-CCCCEEEECCCCchHHHHHHHHHHHCCCe-EEEcCHHHHHHHHHHHHHHHHHcCCcEE
Confidence 3456788899998764 36999999987533223444444447754 4431111111256899999999999765
No 136
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=90.28 E-value=0.85 Score=45.97 Aligned_cols=97 Identities=9% Similarity=0.004 Sum_probs=57.4
Q ss_pred CCCcEEEEe-eCCcH-HHHHHHhcCC---eEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCC
Q 007482 8 SKTTQALFY-NYKQL-PIQRMLDFDF---LCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSF 82 (602)
Q Consensus 8 ~p~s~avv~-g~~~~-~~~~~~~~g~---~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~ 82 (602)
..+++++|| |..|+ +.+.+++.+. +.|...+ .+...+.+.+ .+-.|++.+.+..++.+ +.|++++++|+
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~DiViiavp~ 76 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSN-RSNVEKLDQL--QARYNVSTTTDWKQHVT---SVDTIVLAMPP 76 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEEC-CCCHHHHHHH--HHHcCcEEeCChHHHHh---cCCEEEEecCH
Confidence 356788886 33344 6677777653 2132333 2111111111 11135677888888765 47999999998
Q ss_pred hhhHHHHHHHhhC-CCCcEEEEecCCCCHH
Q 007482 83 RSAAASSMAALKQ-PTIRVVAIIAEGVPEA 111 (602)
Q Consensus 83 ~~~~~~~~e~~~~-~gv~~~viis~Gf~E~ 111 (602)
.. ...+++.+.. ..=+.+|-++.|+.-.
T Consensus 77 ~~-~~~v~~~l~~~~~~~~vis~~~gi~~~ 105 (245)
T PRK07634 77 SA-HEELLAELSPLLSNQLVVTVAAGIGPS 105 (245)
T ss_pred HH-HHHHHHHHHhhccCCEEEEECCCCCHH
Confidence 74 6778887652 1225677778899765
No 137
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=88.55 E-value=3.2 Score=39.82 Aligned_cols=87 Identities=13% Similarity=0.001 Sum_probs=56.5
Q ss_pred EEEEeeCCcH---HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhHHH
Q 007482 12 QALFYNYKQL---PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAAS 88 (602)
Q Consensus 12 ~avv~g~~~~---~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~ 88 (602)
++|+ |+++. .++.|.+.||++|+-+. ... ...+..+.|+|+|.+..++....++.+.++++++.......
T Consensus 2 ~~I~-Gag~~g~~~~~~l~~~g~~vvgfid-~~~-----~~~~~~i~g~pvlg~~~~l~~~~~~~~~~iiai~~~~~~~~ 74 (201)
T TIGR03570 2 LVII-GAGGHGRVVADIAEDSGWEIVGFLD-DNP-----ALQGTSVDGLPVLGGDEDLLRYPPDEVDLVVAIGDNKLRRR 74 (201)
T ss_pred EEEE-cCCHHHHHHHHHHHhCCCEEEEEEc-CCc-----cccCcccCCccEECCHHHHhhhcccccEEEEEcCCHHHHHH
Confidence 3444 54443 66666678999875554 211 12246789999999888764332346888999876555677
Q ss_pred HHHHhhCCCCcEEEEec
Q 007482 89 SMAALKQPTIRVVAIIA 105 (602)
Q Consensus 89 ~~e~~~~~gv~~~viis 105 (602)
+++.+.+.+++...++.
T Consensus 75 i~~~l~~~g~~~~~~i~ 91 (201)
T TIGR03570 75 LFEKLKAKGYRFATLIH 91 (201)
T ss_pred HHHHHHhCCCcceEEec
Confidence 88888877776555544
No 138
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=87.67 E-value=0.81 Score=52.62 Aligned_cols=177 Identities=13% Similarity=-0.000 Sum_probs=118.6
Q ss_pred eeecccccCCHHHHhhcCCCccEEEEecCChhhHHHHHHHhhCCCCcEEEEecCCCCHHH-HHHHHHHHHhCCC------
Q 007482 53 EEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEAD-TKQLIAYARSNNK------ 125 (602)
Q Consensus 53 ~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~-~~~l~~~a~~~g~------ 125 (602)
+..|-++|.....+.+ .+ +-+..+.+... ..-.-..+....+++-+-+++++.++. .+.+...++..++
T Consensus 306 tn~Gg~gvla~D~l~~-~g--~~l~~~~~~~~-~~l~~~Lp~~~~~~NPvD~~~~a~~e~y~~~~~~~~~~~~~~~llvi 381 (598)
T COG1042 306 TNGGGPGVLAADALEE-RG--LKLAELSEETI-EKLRSRLPPHASVKNPVDLTGDADAERYKKTLEILLRDENVDALLVI 381 (598)
T ss_pred ecCCCccccchhHHHH-cC--CCcCCCCHHHH-HHHHhhcCccccccCCeeeecCCcHHHHHHHHHHHHhccCCceEEEE
Confidence 5577899998887654 22 33333333322 222344466789999999999998864 3333344444443
Q ss_pred eeEcCCcccccccCcccccccCCcccccccccCCCCCcEEEEecChhHHHHHH-HHHHhcCCceeEEeeccCCCCCCCCH
Q 007482 126 VVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELY-NTIARVTDGIYEGIAIGGDVFPGSTL 204 (602)
Q Consensus 126 riiGPNc~G~~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQSG~l~~~~~-~~~~~~g~G~s~~vs~Gn~~~~dv~~ 204 (602)
+.-+||+. -.+.. .. ..++ .....|+..+++|.|+...... ..+.+.|++++.....++.+ ...+
T Consensus 382 ~~~~~~~~--~~~~a-~~---~~~~------~~~~~~k~~v~~~~gg~~~~~~~~~l~~~gip~~~~pe~a~~a--~~~l 447 (598)
T COG1042 382 VLPPASAD--PEETA-EA---IIRA------TAKKRGKPVVVSSMGGESSEKARRLLEEAGIPTYPTPERAVKA--LSAL 447 (598)
T ss_pred ecCCCCCC--chhhh-HH---HHHh------hhhhCCCceEEEecCCcchHHHHHHhhhcCCCCccCchHHHHH--HHHH
Confidence 33344443 00100 10 0111 2236889999999999444433 45778899999999999999 9999
Q ss_pred HHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHhcCCCCCEEEEEeCcCccCccccccccccCC
Q 007482 205 SDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGA 270 (602)
Q Consensus 205 ~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~~~KPVv~~k~Gr~~~g~~~~aa~sHtga 270 (602)
.++.++...+.+| .|.| +. +++.+.+.++++-. ++...+|+..
T Consensus 448 ~~~~~~~~~~~~~----~~~~-~~----------------~~~~~~~~e~~~~l--~~~gi~~~~~ 490 (598)
T COG1042 448 ARYRRWLKKLRET----PVFE-GG----------------GGTTLDEPEAKELL--EAYGIPVPAT 490 (598)
T ss_pred HHHHHHHHhhccC----cccc-cC----------------CccccCchhhhhHH--HHhcCccccc
Confidence 9999999999999 3377 44 78888888998887 8888888877
No 139
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=87.66 E-value=3.5 Score=38.29 Aligned_cols=61 Identities=15% Similarity=0.095 Sum_probs=44.4
Q ss_pred CccEEEEec---CChhhHHHHHHHhhCCCCcEEEEecCC---CCHHHHHHHHHHHHhCCC-eeEcCCc
Q 007482 72 MADVFINFS---SFRSAAASSMAALKQPTIRVVAIIAEG---VPEADTKQLIAYARSNNK-VVIGPAT 132 (602)
Q Consensus 72 ~vDlavi~v---p~~~~~~~~~e~~~~~gv~~~viis~G---f~E~~~~~l~~~a~~~g~-riiGPNc 132 (602)
++|++.++. ..-.....+++.+.++|.+...++-.| +++.++.+..+.+++.|+ ++.||.+
T Consensus 52 ~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt 119 (134)
T TIGR01501 52 KADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGT 119 (134)
T ss_pred CCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCC
Confidence 478765543 222235678888988998777777777 677888888888899998 5899865
No 140
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=87.11 E-value=4.4 Score=37.37 Aligned_cols=61 Identities=13% Similarity=0.082 Sum_probs=43.8
Q ss_pred CccEEEEec---CChhhHHHHHHHhhCCCCcEEEEecCCC---CHHHHHHHHHHHHhCCC-eeEcCCc
Q 007482 72 MADVFINFS---SFRSAAASSMAALKQPTIRVVAIIAEGV---PEADTKQLIAYARSNNK-VVIGPAT 132 (602)
Q Consensus 72 ~vDlavi~v---p~~~~~~~~~e~~~~~gv~~~viis~Gf---~E~~~~~l~~~a~~~g~-riiGPNc 132 (602)
++|++.++. ..-.....+++.+.++|++.+.|+-+|- ++.+.++-.+..++.|+ ++.||.+
T Consensus 50 ~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt 117 (128)
T cd02072 50 DADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGT 117 (128)
T ss_pred CCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEEECcCC
Confidence 478876554 2222346788999999986676666664 77777777778888998 5999865
No 141
>PRK07680 late competence protein ComER; Validated
Probab=86.97 E-value=1.4 Score=45.44 Aligned_cols=93 Identities=10% Similarity=-0.028 Sum_probs=54.9
Q ss_pred cEEEEe-eCCcH-HHHHHHhcCC---eEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhh
Q 007482 11 TQALFY-NYKQL-PIQRMLDFDF---LCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSA 85 (602)
Q Consensus 11 s~avv~-g~~~~-~~~~~~~~g~---~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~ 85 (602)
+++||| |..|. +.+.+++.|+ .-|...+ +... +.+.+. ++..|++.+.+..++.. +.|++++++|+..
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~-r~~~-~~~~~~-~~~~g~~~~~~~~~~~~---~aDiVilav~p~~- 74 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITN-RTPA-KAYHIK-ERYPGIHVAKTIEEVIS---QSDLIFICVKPLD- 74 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEEC-CCHH-HHHHHH-HHcCCeEEECCHHHHHH---hCCEEEEecCHHH-
Confidence 588887 44444 7788888774 1133332 3211 111110 11225677788888654 4799999998864
Q ss_pred HHHHHHHhhCC--CCcEEEEecCCCCH
Q 007482 86 AASSMAALKQP--TIRVVAIIAEGVPE 110 (602)
Q Consensus 86 ~~~~~e~~~~~--gv~~~viis~Gf~E 110 (602)
+.++++.+... .-+.++-+++|++-
T Consensus 75 ~~~vl~~l~~~l~~~~~iis~~ag~~~ 101 (273)
T PRK07680 75 IYPLLQKLAPHLTDEHCLVSITSPISV 101 (273)
T ss_pred HHHHHHHHHhhcCCCCEEEEECCCCCH
Confidence 77788876521 12456667788853
No 142
>PLN02858 fructose-bisphosphate aldolase
Probab=86.93 E-value=2 Score=54.32 Aligned_cols=110 Identities=10% Similarity=0.028 Sum_probs=72.0
Q ss_pred CCcEEEEe-eCCcH-HHHHHHhcCCeE-EEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhh
Q 007482 9 KTTQALFY-NYKQL-PIQRMLDFDFLC-VAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSA 85 (602)
Q Consensus 9 p~s~avv~-g~~~~-~~~~~~~~g~~~-V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~ 85 (602)
-++|.+|| |..|. +.+||++.||.+ |+-.+ |.+. +.+- -.|.....|..|+.. +.|++++++|....
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~-~~~~---~~l~---~~Ga~~~~s~~e~a~---~advVi~~l~~~~~ 73 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEIS-TPLM---EKFC---ELGGHRCDSPAEAAK---DAAALVVVLSHPDQ 73 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCC-HHHH---HHHH---HcCCeecCCHHHHHh---cCCEEEEEcCChHH
Confidence 45788886 55554 889999999986 32222 3221 1111 136778899999865 37999999999877
Q ss_pred HHHHHH---HhhC-CCCcEEEEecCCCCHHHHHHHHHHHHhCC--CeeE
Q 007482 86 AASSMA---ALKQ-PTIRVVAIIAEGVPEADTKQLIAYARSNN--KVVI 128 (602)
Q Consensus 86 ~~~~~e---~~~~-~gv~~~viis~Gf~E~~~~~l~~~a~~~g--~rii 128 (602)
+.+++. .+.+ ..-..++|-.+=......+++.+.++++| ++++
T Consensus 74 v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~l 122 (1378)
T PLN02858 74 VDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLV 122 (1378)
T ss_pred HHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEE
Confidence 777762 2221 11234566566566667788888888888 7644
No 143
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=86.89 E-value=5.3 Score=37.44 Aligned_cols=57 Identities=23% Similarity=0.330 Sum_probs=41.1
Q ss_pred CccEEEEecCCh---hhHHHHHHHhhCCCCcEEEEecCCC-CHHHHHHHHHHHHhCCC-eeEcCCc
Q 007482 72 MADVFINFSSFR---SAAASSMAALKQPTIRVVAIIAEGV-PEADTKQLIAYARSNNK-VVIGPAT 132 (602)
Q Consensus 72 ~vDlavi~vp~~---~~~~~~~e~~~~~gv~~~viis~Gf-~E~~~~~l~~~a~~~g~-riiGPNc 132 (602)
++|.+++|.-.. ...+.++|+|.++|+..+.++..|. +..+.+++ +++|+ ++.+|.+
T Consensus 63 dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l----~~~G~~~if~pgt 124 (143)
T COG2185 63 DVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGVIPPGDYQEL----KEMGVDRIFGPGT 124 (143)
T ss_pred CCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCccCchhHHHH----HHhCcceeeCCCC
Confidence 589988876542 2346899999999999999888885 44454444 55776 6888854
No 144
>PLN03139 formate dehydrogenase; Provisional
Probab=86.74 E-value=4.4 Score=44.29 Aligned_cols=110 Identities=12% Similarity=0.058 Sum_probs=67.4
Q ss_pred CCCCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChh
Q 007482 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRS 84 (602)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~ 84 (602)
+.=+++.||| |..|+ +.++|..+|.+++ +.+ +.... .+ . ....|+..+.+++|+.+ +.|++++++|...
T Consensus 197 L~gktVGIVG~G~IG~~vA~~L~afG~~V~-~~d-~~~~~-~~-~--~~~~g~~~~~~l~ell~---~sDvV~l~lPlt~ 267 (386)
T PLN03139 197 LEGKTVGTVGAGRIGRLLLQRLKPFNCNLL-YHD-RLKMD-PE-L--EKETGAKFEEDLDAMLP---KCDVVVINTPLTE 267 (386)
T ss_pred CCCCEEEEEeecHHHHHHHHHHHHCCCEEE-EEC-CCCcc-hh-h--HhhcCceecCCHHHHHh---hCCEEEEeCCCCH
Confidence 4556889887 44444 8888888999864 343 32110 00 0 12346667779999876 4799999999755
Q ss_pred hHHHHHH--HhhCCCCcEEEEecCCCCH-HHHHHHHHHHHhCCCe
Q 007482 85 AAASSMA--ALKQPTIRVVAIIAEGVPE-ADTKQLIAYARSNNKV 126 (602)
Q Consensus 85 ~~~~~~e--~~~~~gv~~~viis~Gf~E-~~~~~l~~~a~~~g~r 126 (602)
....++. .+...+-. +++|-.+=.+ .+++.|++..++..++
T Consensus 268 ~T~~li~~~~l~~mk~g-a~lIN~aRG~iVDe~AL~~AL~sG~l~ 311 (386)
T PLN03139 268 KTRGMFNKERIAKMKKG-VLIVNNARGAIMDTQAVADACSSGHIG 311 (386)
T ss_pred HHHHHhCHHHHhhCCCC-eEEEECCCCchhhHHHHHHHHHcCCce
Confidence 4444432 22222333 4444444433 4899999988877665
No 145
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=86.67 E-value=3.6 Score=38.01 Aligned_cols=64 Identities=17% Similarity=0.177 Sum_probs=42.0
Q ss_pred HHHHhhcCCCccEEEEecCCh---hhHHHHHHHhhCCCCcEEEEecCC-CCHHHHHHHHHHHHhCCC-eeEcCCc
Q 007482 63 VEAACAAHPMADVFINFSSFR---SAAASSMAALKQPTIRVVAIIAEG-VPEADTKQLIAYARSNNK-VVIGPAT 132 (602)
Q Consensus 63 v~~i~~~~p~vDlavi~vp~~---~~~~~~~e~~~~~gv~~~viis~G-f~E~~~~~l~~~a~~~g~-riiGPNc 132 (602)
++.+.++ ++|.+++|.-.. ...+.+++++.++|.+.+.++.+| .++.++++ .++.|+ ++++|.+
T Consensus 46 v~aa~e~--~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~----l~~~Gvd~~~~~gt 114 (132)
T TIGR00640 46 ARQAVEA--DVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDE----LKEMGVAEIFGPGT 114 (132)
T ss_pred HHHHHHc--CCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHH----HHHCCCCEEECCCC
Confidence 4444333 489998876442 235678888888887666666776 55444444 466888 6899876
No 146
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=86.49 E-value=3.5 Score=43.21 Aligned_cols=191 Identities=14% Similarity=0.100 Sum_probs=104.0
Q ss_pred CcEEEEe-eCCcH-HHHHHHhcCCeE-EEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhH
Q 007482 10 TTQALFY-NYKQL-PIQRMLDFDFLC-VAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAA 86 (602)
Q Consensus 10 ~s~avv~-g~~~~-~~~~~~~~g~~~-V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~ 86 (602)
+.+-.+| |..|+ ...||++.||++ |+-++ +++- ++| +-.|-.++.|-+|+.+ +.|+++.+||.+..+
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~-~~k~---~~f---~~~Ga~v~~sPaeVae---~sDvvitmv~~~~~v 105 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRT-KDKC---KEF---QEAGARVANSPAEVAE---DSDVVITMVPNPKDV 105 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHcCCEEEEEeCc-HHHH---HHH---HHhchhhhCCHHHHHh---hcCEEEEEcCChHhh
Confidence 4566665 55555 899999999997 66654 4332 122 3357899999999866 479999999987655
Q ss_pred HHHHHH-hhC-C---CCcEEEEecCCCCHHHHHHHHHHHHhCCCe-eEcCCcccccccCcccccccCC----cccccccc
Q 007482 87 ASSMAA-LKQ-P---TIRVVAIIAEGVPEADTKQLIAYARSNNKV-VIGPATVGGIQAGAFKIGDTAG----TIDNIIHC 156 (602)
Q Consensus 87 ~~~~e~-~~~-~---gv~~~viis~Gf~E~~~~~l~~~a~~~g~r-iiGPNc~G~~~~~~~~l~~~~~----~~~~~~p~ 156 (602)
.+++-. ++. . -.+...|-++=+......+|.+.++..|.| |=.|=+-|.--.....|.-+.+ .|....|.
T Consensus 106 ~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~ 185 (327)
T KOG0409|consen 106 KDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPV 185 (327)
T ss_pred HHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHH
Confidence 554432 211 0 012232455666666778888888888877 4566665554333322200000 01000110
Q ss_pred cCCCCC-cEEEEecChhHHHH-H-HHHHHh-cCCceeEEeeccCCCCCCCCHHHHHHHhhc
Q 007482 157 KLYRPG-SVGFVSKSGGMSNE-L-YNTIAR-VTDGIYEGIAIGGDVFPGSTLSDHILRFNN 213 (602)
Q Consensus 157 ~~~~~G-~valvSQSG~l~~~-~-~~~~~~-~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~ 213 (602)
-. .=| ++-+..++|+-... + .+.+.. .=+|++.....|-.. ++|...+++-+..
T Consensus 186 ~~-~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~--GLd~~~l~eiln~ 243 (327)
T KOG0409|consen 186 FK-LMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRL--GLDAKKLLEILNT 243 (327)
T ss_pred HH-HhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHhc
Confidence 00 123 55566666553322 1 111111 123555555556665 6666666666554
No 147
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=86.05 E-value=1.6 Score=43.58 Aligned_cols=54 Identities=24% Similarity=0.417 Sum_probs=41.2
Q ss_pred CCHHHHHHHhhcCCCccEEEEEEecCCC-c---HHHHHHHHHhcCCCCCEEEEEeCcCc
Q 007482 202 STLSDHILRFNNIPQVKMMVVLGELGGR-D---EYSLVEALKQGKVNKPVVAWVSGTCA 256 (602)
Q Consensus 202 v~~~d~l~~l~~Dp~t~~I~ly~E~g~~-~---~~~f~~~~r~~~~~KPVv~~k~Gr~~ 256 (602)
-++.+.|+.+.+||++++|++.++ +.. + .+++.+++++.+.+||||++--|...
T Consensus 28 ~~l~~~l~~a~~d~~i~~Vvl~~~-s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~a~ 85 (214)
T cd07022 28 EGIAAAIRAALADPDVRAIVLDID-SPGGEVAGVFELADAIRAARAGKPIVAFVNGLAA 85 (214)
T ss_pred HHHHHHHHHHhhCCCCcEEEEEEe-CCCCcHHHHHHHHHHHHHHhcCCCEEEEECCchh
Confidence 467788888999999999999998 443 2 34566777765558999999987543
No 148
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=85.87 E-value=1.1 Score=46.91 Aligned_cols=107 Identities=12% Similarity=-0.037 Sum_probs=57.1
Q ss_pred CcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCC--Cccccc-------cCcee-ecccccCCHHHHhhcCCCccEEE
Q 007482 10 TTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAE--GFQKLF-------FGQEE-IAIPVHSTVEAACAAHPMADVFI 77 (602)
Q Consensus 10 ~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~--~~~~~~-------~g~~v-~G~~~y~sv~~i~~~~p~vDlav 77 (602)
++++|+| |..|. ...+|.+.|+++ ..++ .... .+.... .+.++ .+.....+.+++.. +.|+++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V-~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~D~vi 76 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDV-TLWA-RDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA---DADLIL 76 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEE-EEEE-CCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh---CCCEEE
Confidence 3688886 33344 777788888875 2333 2111 000000 00000 14555667776654 479999
Q ss_pred EecCChhhHHHHHHHhhCC-CC-cEEEEecCCCCHHHHHHHHHHHHh
Q 007482 78 NFSSFRSAAASSMAALKQP-TI-RVVAIIAEGVPEADTKQLIAYARS 122 (602)
Q Consensus 78 i~vp~~~~~~~~~e~~~~~-gv-~~~viis~Gf~E~~~~~l~~~a~~ 122 (602)
++||.. .+..+++.+... .- +.+|.++.|+.....+++.+..++
T Consensus 77 ~~v~~~-~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~ 122 (325)
T PRK00094 77 VAVPSQ-ALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEE 122 (325)
T ss_pred EeCCHH-HHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHH
Confidence 999986 477887777631 11 234445558875433333344333
No 149
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=85.48 E-value=4.3 Score=43.06 Aligned_cols=107 Identities=11% Similarity=0.026 Sum_probs=63.4
Q ss_pred CCCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhh
Q 007482 8 SKTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSA 85 (602)
Q Consensus 8 ~p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~ 85 (602)
.-+++.||| |.-|+ +.+++..+|++++ +++ +..... ..+.....+.++.++.+ +.|++++++|....
T Consensus 135 ~g~tvgIvG~G~IG~~vA~~l~afG~~V~-~~~-~~~~~~------~~~~~~~~~~~l~e~l~---~aDvvv~~lPlt~~ 203 (312)
T PRK15469 135 EDFTIGILGAGVLGSKVAQSLQTWGFPLR-CWS-RSRKSW------PGVQSFAGREELSAFLS---QTRVLINLLPNTPE 203 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEe-CCCCCC------CCceeecccccHHHHHh---cCCEEEECCCCCHH
Confidence 446888886 44455 7788888999864 555 322100 00111113467888876 47999999997654
Q ss_pred HHHHHHH--hhCCCCcEEEEecCCCCHH-HHHHHHHHHHhCCCe
Q 007482 86 AASSMAA--LKQPTIRVVAIIAEGVPEA-DTKQLIAYARSNNKV 126 (602)
Q Consensus 86 ~~~~~e~--~~~~gv~~~viis~Gf~E~-~~~~l~~~a~~~g~r 126 (602)
...++.+ ..+.+ +.+++|-.|=++. +++.|.+..++..++
T Consensus 204 T~~li~~~~l~~mk-~ga~lIN~aRG~vVde~aL~~aL~~g~i~ 246 (312)
T PRK15469 204 TVGIINQQLLEQLP-DGAYLLNLARGVHVVEDDLLAALDSGKVK 246 (312)
T ss_pred HHHHhHHHHHhcCC-CCcEEEECCCccccCHHHHHHHHhcCCee
Confidence 4444321 22222 2345555555554 788898888877654
No 150
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=85.05 E-value=5.6 Score=42.38 Aligned_cols=107 Identities=9% Similarity=0.010 Sum_probs=63.0
Q ss_pred CCcEEEEee-CCcHHHHHH-HhcCCeE-EEEEeCC------CCCCccccccC-ce-eecccccCCHHHHhhcCCCccEEE
Q 007482 9 KTTQALFYN-YKQLPIQRM-LDFDFLC-VAGIINP------GAEGFQKLFFG-QE-EIAIPVHSTVEAACAAHPMADVFI 77 (602)
Q Consensus 9 p~s~avv~g-~~~~~~~~~-~~~g~~~-V~gv~~p------~~~~~~~~~~g-~~-v~G~~~y~sv~~i~~~~p~vDlav 77 (602)
+++|+|+|+ .-|..+.++ .+.|.++ +++.+ | ...++-..|+. -. -.++.+.++++++.+ ..|+.|
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~-~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~---~ad~iv 76 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRD-EEIVAEINETRENPKYLPGILLPPNLKATTDLAEALD---GADIIV 76 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecC-HHHHHHHHhcCcCccccCCccCCcccccccCHHHHHh---cCCEEE
Confidence 468899973 445544444 4466665 66653 2 11111112222 11 245778889999876 379999
Q ss_pred EecCChhhHHHHHHHhh---CCCCcEEEEecCCCCHHHHHHHHHHHH
Q 007482 78 NFSSFRSAAASSMAALK---QPTIRVVAIIAEGVPEADTKQLIAYAR 121 (602)
Q Consensus 78 i~vp~~~~~~~~~e~~~---~~gv~~~viis~Gf~E~~~~~l~~~a~ 121 (602)
+.||.. ....+++... .++.+ +|..|=||-...-+.+-++++
T Consensus 77 ~avPs~-~~r~v~~~l~~~l~~~~~-iv~~sKGie~~t~~l~seii~ 121 (329)
T COG0240 77 IAVPSQ-ALREVLRQLKPLLLKDAI-IVSATKGLEPETGRLLSEIIE 121 (329)
T ss_pred EECChH-HHHHHHHHHhhhccCCCe-EEEEeccccCCCcchHHHHHH
Confidence 999986 4788888764 33343 555677986553334444443
No 151
>PRK06545 prephenate dehydrogenase; Validated
Probab=84.95 E-value=3.6 Score=44.34 Aligned_cols=111 Identities=14% Similarity=0.030 Sum_probs=62.7
Q ss_pred CcEEEEe-e-CCcHHHHHHHhcCCeE-EEEEeCCCCCCccccccCceeeccc--ccCCHHHHhhcCCCccEEEEecCChh
Q 007482 10 TTQALFY-N-YKQLPIQRMLDFDFLC-VAGIINPGAEGFQKLFFGQEEIAIP--VHSTVEAACAAHPMADVFINFSSFRS 84 (602)
Q Consensus 10 ~s~avv~-g-~~~~~~~~~~~~g~~~-V~gv~~p~~~~~~~~~~g~~v~G~~--~y~sv~~i~~~~p~vDlavi~vp~~~ 84 (602)
+++.||| | +++.+.+.+.+.|+.+ +++.+ |.... .... .-.|+. ...++.++.. +.|++|++||...
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~-~~~~~-~~~a---~~~~~~~~~~~~~~~~~~---~aDlVilavP~~~ 72 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYD-PSAAQ-LARA---LGFGVIDELAADLQRAAA---EADLIVLAVPVDA 72 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeC-CCHHH-HHHH---hcCCCCcccccCHHHHhc---CCCEEEEeCCHHH
Confidence 3578886 4 4455888888888875 44544 43211 0000 011221 1245555543 4799999999974
Q ss_pred hHHHHHHHhhC--CCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcC
Q 007482 85 AAASSMAALKQ--PTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGP 130 (602)
Q Consensus 85 ~~~~~~e~~~~--~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGP 130 (602)
...++++... ..-+.+|.-.++.+....+++.+. ...+.+++|-
T Consensus 73 -~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~-~~~~~~~ig~ 118 (359)
T PRK06545 73 -TAALLAELADLELKPGVIVTDVGSVKGAILAEAEAL-LGDLIRFVGG 118 (359)
T ss_pred -HHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHh-cCCCCeEEee
Confidence 7788887763 223345555677776544444433 2346677763
No 152
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.82 E-value=2.7 Score=45.04 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=34.6
Q ss_pred ccccCCHHHHhhcCCCccEEEEecCChhhHHHHHHHhhCC-CC-cEEEEecCCCCHH
Q 007482 57 IPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQP-TI-RVVAIIAEGVPEA 111 (602)
Q Consensus 57 ~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~~e~~~~~-gv-~~~viis~Gf~E~ 111 (602)
+.+..+.+++.+ +.|+++++||+.. ..++++.+... +- ..+|.++-|+...
T Consensus 65 i~~t~d~~~a~~---~aDlVilavps~~-~~~vl~~i~~~l~~~~~vIsl~kGi~~~ 117 (341)
T PRK12439 65 LRATTDFAEAAN---CADVVVMGVPSHG-FRGVLTELAKELRPWVPVVSLVKGLEQG 117 (341)
T ss_pred eEEECCHHHHHh---cCCEEEEEeCHHH-HHHHHHHHHhhcCCCCEEEEEEeCCcCC
Confidence 345566666544 4799999999865 78888887632 11 2366778899753
No 153
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=84.60 E-value=7 Score=33.79 Aligned_cols=81 Identities=15% Similarity=0.140 Sum_probs=45.8
Q ss_pred cEEEEeeCCcH--HHHHHHh-cCCeEEEEEeC-CCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCC--hh
Q 007482 11 TQALFYNYKQL--PIQRMLD-FDFLCVAGIIN-PGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSF--RS 84 (602)
Q Consensus 11 s~avv~g~~~~--~~~~~~~-~g~~~V~gv~~-p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~--~~ 84 (602)
+++||||...+ ..+++++ +|++.+ .| +.++ .. ++-..++....++|++|+++.. +.
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~---~hg~~~~-------------~~--~~~~~l~~~i~~aD~VIv~t~~vsH~ 62 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLI---HHGRDGG-------------DE--KKASRLPSKIKKADLVIVFTDYVSHN 62 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEE---EEecCCC-------------Cc--cchhHHHHhcCCCCEEEEEeCCcChH
Confidence 58899984443 5555554 888752 23 1111 00 1111122222246999987653 33
Q ss_pred hHHHHHHHhhCCCCcEEEEecCCCC
Q 007482 85 AAASSMAALKQPTIRVVAIIAEGVP 109 (602)
Q Consensus 85 ~~~~~~e~~~~~gv~~~viis~Gf~ 109 (602)
....+.+.|.+.+++.+..=+.|..
T Consensus 63 ~~~~vk~~akk~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 63 AMWKVKKAAKKYGIPIIYSRSRGVS 87 (97)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCHH
Confidence 4678899999889986665444443
No 154
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=84.53 E-value=1.3 Score=44.48 Aligned_cols=50 Identities=24% Similarity=0.298 Sum_probs=38.0
Q ss_pred CHHHHHHHhhcCCCccEEEEEEecCCC----cHHHHHHHHHhcC-CCCCEEEEEeC
Q 007482 203 TLSDHILRFNNIPQVKMMVVLGELGGR----DEYSLVEALKQGK-VNKPVVAWVSG 253 (602)
Q Consensus 203 ~~~d~l~~l~~Dp~t~~I~ly~E~g~~----~~~~f~~~~r~~~-~~KPVv~~k~G 253 (602)
++.+.|+.+.+||++|+|+|.++ +.. +-+++.+++++.+ .+||||++--|
T Consensus 33 ~l~~~l~~a~~d~~ik~vvL~~~-s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~ 87 (222)
T cd07018 33 DLLEALEKAAEDDRIKGIVLDLD-GLSGGLAKLEELRQALERFRASGKPVIAYADG 87 (222)
T ss_pred HHHHHHHHHhcCCCeEEEEEECC-CCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCC
Confidence 45667777889999999999998 432 2356666777665 68999999765
No 155
>PRK12350 citrate synthase 2; Provisional
Probab=84.46 E-value=0.4 Score=51.61 Aligned_cols=44 Identities=27% Similarity=0.322 Sum_probs=36.7
Q ss_pred HHHHhhhcCCC--cccCCCCCcccccCCCcHHHHHHHhhhCCCCchh
Q 007482 348 ISTISDDRGEE--PCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRY 392 (602)
Q Consensus 348 ~t~I~~~~g~~--i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~ 392 (602)
.|+||...|+. +.|||+++.||..+. +|+++.|+||+|+.|+..
T Consensus 12 ~s~Is~idg~~G~L~YRGy~i~dLa~~~-sFeEva~LL~~G~LP~~~ 57 (353)
T PRK12350 12 ETEIAEPDGDGGALRYRGVDIEDLVGRV-TFEDVWALLVDGRFGPGL 57 (353)
T ss_pred eeeCcceeCCCCEEEECCccHHHHhccC-CHHHHHHHHHCCCCCCcc
Confidence 35677776654 779999999999998 999999999998887654
No 156
>PRK07574 formate dehydrogenase; Provisional
Probab=84.00 E-value=5.4 Score=43.62 Aligned_cols=110 Identities=13% Similarity=0.125 Sum_probs=65.2
Q ss_pred CCCCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChh
Q 007482 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRS 84 (602)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~ 84 (602)
+.=+++.||| |..|+ +.+++..+|++++ +.+ +.... .+. ..-.|+..|.+++|+.+ +.|++++++|...
T Consensus 190 L~gktVGIvG~G~IG~~vA~~l~~fG~~V~-~~d-r~~~~--~~~--~~~~g~~~~~~l~ell~---~aDvV~l~lPlt~ 260 (385)
T PRK07574 190 LEGMTVGIVGAGRIGLAVLRRLKPFDVKLH-YTD-RHRLP--EEV--EQELGLTYHVSFDSLVS---VCDVVTIHCPLHP 260 (385)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEC-CCCCc--hhh--HhhcCceecCCHHHHhh---cCCEEEEcCCCCH
Confidence 3445788886 44455 7788888999864 444 42210 000 11235666889999876 4799999999755
Q ss_pred hHHHHHHH--hhCCCCcEEEEecCCCC-HHHHHHHHHHHHhCCCe
Q 007482 85 AAASSMAA--LKQPTIRVVAIIAEGVP-EADTKQLIAYARSNNKV 126 (602)
Q Consensus 85 ~~~~~~e~--~~~~gv~~~viis~Gf~-E~~~~~l~~~a~~~g~r 126 (602)
....++.+ ....+ +.+++|-.+=. -.+++.|.+..++..++
T Consensus 261 ~T~~li~~~~l~~mk-~ga~lIN~aRG~iVDe~AL~~AL~sG~i~ 304 (385)
T PRK07574 261 ETEHLFDADVLSRMK-RGSYLVNTARGKIVDRDAVVRALESGHLA 304 (385)
T ss_pred HHHHHhCHHHHhcCC-CCcEEEECCCCchhhHHHHHHHHHhCCcc
Confidence 44443321 22222 23344433333 34889999988886655
No 157
>PLN02256 arogenate dehydrogenase
Probab=83.92 E-value=3.9 Score=43.21 Aligned_cols=75 Identities=9% Similarity=0.101 Sum_probs=48.2
Q ss_pred CCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhH
Q 007482 9 KTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAA 86 (602)
Q Consensus 9 p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~ 86 (602)
.++++||| |..|. +.+.+.+.|++++ +++ +.... .. ..-.|+..+.+.+++... +.|+++++||+. ..
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~-~~d-~~~~~---~~--a~~~gv~~~~~~~e~~~~--~aDvVilavp~~-~~ 105 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVL-ATS-RSDYS---DI--AAELGVSFFRDPDDFCEE--HPDVVLLCTSIL-ST 105 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEE-EEE-CccHH---HH--HHHcCCeeeCCHHHHhhC--CCCEEEEecCHH-HH
Confidence 45788887 43333 7777777887754 554 43211 00 112456678888886432 379999999986 47
Q ss_pred HHHHHHh
Q 007482 87 ASSMAAL 93 (602)
Q Consensus 87 ~~~~e~~ 93 (602)
..+++++
T Consensus 106 ~~vl~~l 112 (304)
T PLN02256 106 EAVLRSL 112 (304)
T ss_pred HHHHHhh
Confidence 7788877
No 158
>PRK13243 glyoxylate reductase; Reviewed
Probab=83.31 E-value=4.6 Score=43.16 Aligned_cols=109 Identities=11% Similarity=0.008 Sum_probs=63.0
Q ss_pred CCCCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChh
Q 007482 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRS 84 (602)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~ 84 (602)
+.=+++.||| |..|+ +.+.+..+|++++ +.+ |...... .+..|.+ |.++.|+.+ +.|++++++|...
T Consensus 148 L~gktvgIiG~G~IG~~vA~~l~~~G~~V~-~~d-~~~~~~~-----~~~~~~~-~~~l~ell~---~aDiV~l~lP~t~ 216 (333)
T PRK13243 148 VYGKTIGIIGFGRIGQAVARRAKGFGMRIL-YYS-RTRKPEA-----EKELGAE-YRPLEELLR---ESDFVSLHVPLTK 216 (333)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCEEE-EEC-CCCChhh-----HHHcCCE-ecCHHHHHh---hCCEEEEeCCCCh
Confidence 4556888886 54455 7778888999864 554 4221100 1122443 568898876 4799999999754
Q ss_pred hHHHHH--HHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCe
Q 007482 85 AAASSM--AALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV 126 (602)
Q Consensus 85 ~~~~~~--e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~r 126 (602)
....++ +.+...+-..++|-++--+-.+++.|.+..++..++
T Consensus 217 ~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~ 260 (333)
T PRK13243 217 ETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIA 260 (333)
T ss_pred HHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeE
Confidence 333333 223322223344433322333788888888776443
No 159
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=83.23 E-value=3.5 Score=43.64 Aligned_cols=104 Identities=11% Similarity=0.057 Sum_probs=66.0
Q ss_pred CCCCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChh
Q 007482 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRS 84 (602)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~ 84 (602)
+.=+++.||| |.-|+ +.+.+..||.+++ +.+ |.... +..+.+ |.++.|+.+ +.|++++.+|...
T Consensus 143 L~gktvGIiG~G~IG~~vA~~~~~fgm~V~-~~d-~~~~~--------~~~~~~-~~~l~ell~---~sDvv~lh~Plt~ 208 (311)
T PRK08410 143 IKGKKWGIIGLGTIGKRVAKIAQAFGAKVV-YYS-TSGKN--------KNEEYE-RVSLEELLK---TSDIISIHAPLNE 208 (311)
T ss_pred cCCCEEEEECCCHHHHHHHHHHhhcCCEEE-EEC-CCccc--------cccCce-eecHHHHhh---cCCEEEEeCCCCc
Confidence 5567888886 54466 6666767888864 454 52211 112333 668999887 4699999999753
Q ss_pred hH-----HHHHHHhhCCCCcEEEEecCCCCHH-HHHHHHHHHHhCCCeeEc
Q 007482 85 AA-----ASSMAALKQPTIRVVAIIAEGVPEA-DTKQLIAYARSNNKVVIG 129 (602)
Q Consensus 85 ~~-----~~~~e~~~~~gv~~~viis~Gf~E~-~~~~l~~~a~~~g~riiG 129 (602)
.. ...++.+. +.+++|-.+=++. +++.|++..++..++ .|
T Consensus 209 ~T~~li~~~~~~~Mk----~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-Aa 254 (311)
T PRK08410 209 KTKNLIAYKELKLLK----DGAILINVGRGGIVNEKDLAKALDEKDIY-AG 254 (311)
T ss_pred hhhcccCHHHHHhCC----CCeEEEECCCccccCHHHHHHHHHcCCeE-EE
Confidence 32 23445454 3455555555554 889999988877665 54
No 160
>PLN02858 fructose-bisphosphate aldolase
Probab=83.05 E-value=3.7 Score=51.97 Aligned_cols=115 Identities=11% Similarity=0.037 Sum_probs=70.1
Q ss_pred CCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhH
Q 007482 9 KTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAA 86 (602)
Q Consensus 9 p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~ 86 (602)
.+++.+|| |..|. +.++|++.||.+. +.+ +... +.+.+ .-.|.....|..++.. +.|+++++||....+
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~-v~d-r~~~-~~~~l---~~~Ga~~~~s~~e~~~---~aDvVi~~V~~~~~v 394 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVC-GYD-VYKP-TLVRF---ENAGGLAGNSPAEVAK---DVDVLVIMVANEVQA 394 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEE-EEe-CCHH-HHHHH---HHcCCeecCCHHHHHh---cCCEEEEecCChHHH
Confidence 36788886 44444 8899999999862 333 3111 00111 0124555778888765 479999999966666
Q ss_pred HHHHHH----hhCCCCcEEEEecCCCCHHHHHHHHHHHHh--CCCe-eEcCCc
Q 007482 87 ASSMAA----LKQPTIRVVAIIAEGVPEADTKQLIAYARS--NNKV-VIGPAT 132 (602)
Q Consensus 87 ~~~~e~----~~~~gv~~~viis~Gf~E~~~~~l~~~a~~--~g~r-iiGPNc 132 (602)
.+++.. +....-..++|..+-......+++.+.+++ +|++ +=.|=+
T Consensus 395 ~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVs 447 (1378)
T PLN02858 395 ENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVS 447 (1378)
T ss_pred HHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCC
Confidence 666521 221122345555555556677788888888 8887 445643
No 161
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=82.03 E-value=3.2 Score=41.11 Aligned_cols=52 Identities=27% Similarity=0.340 Sum_probs=40.0
Q ss_pred HHHHHHHhhcCCCccEEEEEEecCC-C---cHHHHHHHHHhcCCCCCEEEEEeCcCc
Q 007482 204 LSDHILRFNNIPQVKMMVVLGELGG-R---DEYSLVEALKQGKVNKPVVAWVSGTCA 256 (602)
Q Consensus 204 ~~d~l~~l~~Dp~t~~I~ly~E~g~-~---~~~~f~~~~r~~~~~KPVv~~k~Gr~~ 256 (602)
+.+.|+-+.+|+++++|++++. +. . ...++.+++++.+.+|||+++.-|.+.
T Consensus 18 l~~~l~~a~~d~~i~~vvl~~~-s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~ 73 (207)
T TIGR00706 18 FDKKIKRIKDDKSIKALLLRIN-SPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAA 73 (207)
T ss_pred HHHHHHHHhhCCCccEEEEEec-CCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccc
Confidence 5667777888999999999998 43 2 345677777776567999999988665
No 162
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=81.89 E-value=2.2 Score=42.21 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=39.8
Q ss_pred CHHHHHHHhhcCCCccEEEEEEecCC-Cc---HHHHHHHHHhcC-CCCCEEEEEeCcCc
Q 007482 203 TLSDHILRFNNIPQVKMMVVLGELGG-RD---EYSLVEALKQGK-VNKPVVAWVSGTCA 256 (602)
Q Consensus 203 ~~~d~l~~l~~Dp~t~~I~ly~E~g~-~~---~~~f~~~~r~~~-~~KPVv~~k~Gr~~ 256 (602)
.+.+.|+.+.+||++++|++++. +. .+ .+.+.+++++.+ .+||||++--|.+.
T Consensus 21 ~l~~~l~~a~~d~~i~~ivl~~~-s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~ 78 (208)
T cd07023 21 SLIEQLRKAREDDSVKAVVLRIN-SPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAA 78 (208)
T ss_pred HHHHHHHHHHhCCCCcEEEEEEE-CCCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcch
Confidence 46777888889999999999998 43 22 245556666655 58999999988654
No 163
>PLN02712 arogenate dehydrogenase
Probab=81.70 E-value=4.1 Score=47.70 Aligned_cols=78 Identities=13% Similarity=0.158 Sum_probs=51.1
Q ss_pred CCCCcEEEEe-e-CCcHHHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChh
Q 007482 7 FSKTTQALFY-N-YKQLPIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRS 84 (602)
Q Consensus 7 ~~p~s~avv~-g-~~~~~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~ 84 (602)
..+++|+||| | +++.+.+.+.+.|++++ +.+ +....+ . ..-.|+..+.+.+++... +.|+++++||..
T Consensus 367 ~~~~kIgIIGlG~mG~slA~~L~~~G~~V~-~~d-r~~~~~--~---a~~~Gv~~~~~~~el~~~--~aDvVILavP~~- 436 (667)
T PLN02712 367 GSKLKIAIVGFGNFGQFLAKTMVKQGHTVL-AYS-RSDYSD--E---AQKLGVSYFSDADDLCEE--HPEVILLCTSIL- 436 (667)
T ss_pred CCCCEEEEEecCHHHHHHHHHHHHCcCEEE-EEE-CChHHH--H---HHHcCCeEeCCHHHHHhc--CCCEEEECCChH-
Confidence 4678999997 3 33347788888888754 554 422110 0 112456678888886542 369999999986
Q ss_pred hHHHHHHHhh
Q 007482 85 AAASSMAALK 94 (602)
Q Consensus 85 ~~~~~~e~~~ 94 (602)
....++++..
T Consensus 437 ~~~~vi~~l~ 446 (667)
T PLN02712 437 STEKVLKSLP 446 (667)
T ss_pred HHHHHHHHHH
Confidence 4677777765
No 164
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.44 E-value=5.5 Score=42.53 Aligned_cols=70 Identities=14% Similarity=0.100 Sum_probs=51.8
Q ss_pred cccccCCHHHHhhcCCCccEEEEecCChhhHHHHHHHhhCCCCcEEEEe-cCCCCHHHHHHHHHHHHhCCCeeE
Q 007482 56 AIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAII-AEGVPEADTKQLIAYARSNNKVVI 128 (602)
Q Consensus 56 G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~~e~~~~~gv~~~vii-s~Gf~E~~~~~l~~~a~~~g~rii 128 (602)
..++|.|-+++.+. |+||+++|..|.++-+.-++-++. +| |++.+= .-....++-++|++.|++.|+.++
T Consensus 57 ~~k~y~syEeLakd-~~vDvVyi~~~~~qH~evv~l~l~-~~-K~VL~EKPla~n~~e~~~iveaA~~rgv~~m 127 (351)
T KOG2741|consen 57 NPKAYGSYEELAKD-PEVDVVYISTPNPQHYEVVMLALN-KG-KHVLCEKPLAMNVAEAEEIVEAAEARGVFFM 127 (351)
T ss_pred CCccccCHHHHhcC-CCcCEEEeCCCCccHHHHHHHHHH-cC-CcEEecccccCCHHHHHHHHHHHHHcCcEEE
Confidence 35899999998764 579999999999887777777666 44 333331 114555678999999999997643
No 165
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=81.01 E-value=7 Score=40.44 Aligned_cols=98 Identities=9% Similarity=0.055 Sum_probs=55.9
Q ss_pred CCcEEEEe-eCCcH-HHHHHHhcC----CeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCC
Q 007482 9 KTTQALFY-NYKQL-PIQRMLDFD----FLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSF 82 (602)
Q Consensus 9 p~s~avv~-g~~~~-~~~~~~~~g----~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~ 82 (602)
-+++++|| |..|. +.+.+++.| +.+ ...+ +....+.+.+ ..-.|+....+..++.+ +.|++|++||+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v-~v~~-r~~~~~~~~l--~~~~g~~~~~~~~e~~~---~aDvVilav~p 75 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQI-TVSN-RSNETRLQEL--HQKYGVKGTHNKKELLT---DANILFLAMKP 75 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceE-EEEC-CCCHHHHHHH--HHhcCceEeCCHHHHHh---cCCEEEEEeCH
Confidence 35789886 33343 888888876 443 2333 2111011111 01135666778877654 47999999999
Q ss_pred hhhHHHHHHHhhCCCC---cEEEEecCCCCHHHHHH
Q 007482 83 RSAAASSMAALKQPTI---RVVAIIAEGVPEADTKQ 115 (602)
Q Consensus 83 ~~~~~~~~e~~~~~gv---~~~viis~Gf~E~~~~~ 115 (602)
.. ...+++.+.. .+ +.+|-+++|++....++
T Consensus 76 ~~-~~~vl~~l~~-~~~~~~liIs~~aGi~~~~l~~ 109 (279)
T PRK07679 76 KD-VAEALIPFKE-YIHNNQLIISLLAGVSTHSIRN 109 (279)
T ss_pred HH-HHHHHHHHHh-hcCCCCEEEEECCCCCHHHHHH
Confidence 75 6666776652 22 23444468997653333
No 166
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=80.94 E-value=4.8 Score=43.99 Aligned_cols=111 Identities=10% Similarity=-0.054 Sum_probs=67.5
Q ss_pred CcEEEEee-CCcH-HHHHHHhcC-CeE-EEEEeCCCCCCccccccC----ceeecccccCCHHHHhhcCCCccEEEEecC
Q 007482 10 TTQALFYN-YKQL-PIQRMLDFD-FLC-VAGIINPGAEGFQKLFFG----QEEIAIPVHSTVEAACAAHPMADVFINFSS 81 (602)
Q Consensus 10 ~s~avv~g-~~~~-~~~~~~~~g-~~~-V~gv~~p~~~~~~~~~~g----~~v~G~~~y~sv~~i~~~~p~vDlavi~vp 81 (602)
+++.|+|+ .-|+ ++.+|...+ +++ |+..+ +-+-.+.....+ ......--.+.+.+++.+ .|++|.+.|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs-~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~---~d~VIn~~p 77 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS-KEKCARIAELIGGKVEALQVDAADVDALVALIKD---FDLVINAAP 77 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC-HHHHHHHHhhccccceeEEecccChHHHHHHHhc---CCEEEEeCC
Confidence 45666652 2334 677767755 776 66665 411111101100 123344455667777763 599999999
Q ss_pred ChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeE
Q 007482 82 FRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVI 128 (602)
Q Consensus 82 ~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~rii 128 (602)
+.. -..++++|.+.|+..+-+ |-. .+. ..++.+.|++.|+.++
T Consensus 78 ~~~-~~~i~ka~i~~gv~yvDt-s~~-~~~-~~~~~~~a~~Agit~v 120 (389)
T COG1748 78 PFV-DLTILKACIKTGVDYVDT-SYY-EEP-PWKLDEEAKKAGITAV 120 (389)
T ss_pred chh-hHHHHHHHHHhCCCEEEc-ccC-Cch-hhhhhHHHHHcCeEEE
Confidence 865 568999999999986543 433 222 3788999999998743
No 167
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=80.92 E-value=9.6 Score=41.37 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=34.9
Q ss_pred cccccCCHHHHhhcCCCccEEEEecCChhhHHHHHHHhhC--CCC-c-EEEEecCCCCH
Q 007482 56 AIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQ--PTI-R-VVAIIAEGVPE 110 (602)
Q Consensus 56 G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~~e~~~~--~gv-~-~~viis~Gf~E 110 (602)
.+.+..++.++.. +.|+.|++||+.. +..+++.+.. .-- + .+|.++-|+..
T Consensus 80 ni~~tsdl~eav~---~aDiIvlAVPsq~-l~~vl~~l~~~~~l~~~~~iIS~aKGIe~ 134 (365)
T PTZ00345 80 NIVAVSDLKEAVE---DADLLIFVIPHQF-LESVLSQIKENNNLKKHARAISLTKGIIV 134 (365)
T ss_pred ceEEecCHHHHHh---cCCEEEEEcChHH-HHHHHHHhccccccCCCCEEEEEeCCccc
Confidence 3444566676655 4799999999975 8888998874 111 2 45667889853
No 168
>PRK06270 homoserine dehydrogenase; Provisional
Probab=80.71 E-value=7.8 Score=41.57 Aligned_cols=66 Identities=17% Similarity=0.033 Sum_probs=41.4
Q ss_pred CCHHHHhhcCCCccEEEEecCChhh----HHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeE
Q 007482 61 STVEAACAAHPMADVFINFSSFRSA----AASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVI 128 (602)
Q Consensus 61 ~sv~~i~~~~p~vDlavi~vp~~~~----~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~rii 128 (602)
.++.+++... ++|++|.++|.... .....+++-++|++ +|+-..+.-....++|.+.|+++|..+.
T Consensus 79 ~d~~ell~~~-~~DvVvd~T~s~~~~~~~a~~~~~~aL~~Gkh-VVtaNK~pla~~~~eL~~~A~~~g~~~~ 148 (341)
T PRK06270 79 ISGLEVIRSV-DADVVVEATPTNIETGEPALSHCRKALERGKH-VVTSNKGPLALAYKELKELAKKNGVRFR 148 (341)
T ss_pred CCHHHHhhcc-CCCEEEECCcCcccccchHHHHHHHHHHCCCE-EEcCCcHHHHhhHHHHHHHHHHcCCEEE
Confidence 3788877543 68999999986321 12343444447864 4432223222245789999999998776
No 169
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=80.48 E-value=2.8 Score=40.35 Aligned_cols=55 Identities=25% Similarity=0.219 Sum_probs=38.1
Q ss_pred CHHHHHHHhhcCCCccEEEEEEecCCC-c---HHHHHHHHHhcC-CCCCEEEEEeCcCccC
Q 007482 203 TLSDHILRFNNIPQVKMMVVLGELGGR-D---EYSLVEALKQGK-VNKPVVAWVSGTCARL 258 (602)
Q Consensus 203 ~~~d~l~~l~~Dp~t~~I~ly~E~g~~-~---~~~f~~~~r~~~-~~KPVv~~k~Gr~~~g 258 (602)
++.+.++.+.+||++|+|++.+. +.. + .+.+.+++++.+ .+||||++--|....+
T Consensus 26 ~l~~~l~~a~~d~~v~~vvl~~~-~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~ 85 (177)
T cd07014 26 TTAAQIRDARLDPKVKAIVLRVN-SPGGSVTASEVIRAELAAARAAGKPVVASGGGNAASG 85 (177)
T ss_pred HHHHHHHHHhcCCCceEEEEEee-CCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHH
Confidence 45566677778999999999998 432 2 233444455543 6899999988765543
No 170
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=80.46 E-value=6.5 Score=43.12 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=57.7
Q ss_pred CcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCcccccc-C---------ce------eec-ccccCCHHHHhhcC
Q 007482 10 TTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFF-G---------QE------EIA-IPVHSTVEAACAAH 70 (602)
Q Consensus 10 ~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~-g---------~~------v~G-~~~y~sv~~i~~~~ 70 (602)
++|+||| |..|. ....|.+.|++++ +++ +.... .+.+. | ++ -.| +....+.+++..
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~-~~d-~~~~~-v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~-- 75 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVT-GVD-IDQEK-VDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIR-- 75 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEE-EEE-CCHHH-HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHh--
Confidence 3688887 55555 6677778898853 454 31110 00010 0 00 023 455667777554
Q ss_pred CCccEEEEecCChhh---------HHHHHHHhhC-CCCcEEEEecCCCCHHHHHHHHH
Q 007482 71 PMADVFINFSSFRSA---------AASSMAALKQ-PTIRVVAIIAEGVPEADTKQLIA 118 (602)
Q Consensus 71 p~vDlavi~vp~~~~---------~~~~~e~~~~-~gv~~~viis~Gf~E~~~~~l~~ 118 (602)
+.|+++++||.+.. +..+.+.+.+ ..-+.+||..|.++....+++.+
T Consensus 76 -~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~ 132 (411)
T TIGR03026 76 -DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVK 132 (411)
T ss_pred -hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHH
Confidence 47999999997532 4555555442 12235677777776655555643
No 171
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=80.32 E-value=4.2 Score=43.41 Aligned_cols=108 Identities=14% Similarity=0.119 Sum_probs=68.8
Q ss_pred CCCCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCC--CCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCC
Q 007482 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINP--GAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSF 82 (602)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p--~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~ 82 (602)
++=+++.||| |.-|+ ..+.+..+|++++ +.+ | ++.. ....|..-..++.+++.+ .|..++.+|-
T Consensus 140 l~gkTvGIiG~G~IG~~va~~l~afgm~v~-~~d-~~~~~~~-------~~~~~~~~~~~Ld~lL~~---sDiv~lh~Pl 207 (324)
T COG0111 140 LAGKTVGIIGLGRIGRAVAKRLKAFGMKVI-GYD-PYSPRER-------AGVDGVVGVDSLDELLAE---ADILTLHLPL 207 (324)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHhCCCeEE-EEC-CCCchhh-------hccccceecccHHHHHhh---CCEEEEcCCC
Confidence 4456889897 54455 6667777999975 554 5 2211 345666777899999874 6999999998
Q ss_pred hhhHHHHHHHhhCCCC-cEEEEecCCCCHH-HHHHHHHHHHhCCCe
Q 007482 83 RSAAASSMAALKQPTI-RVVAIIAEGVPEA-DTKQLIAYARSNNKV 126 (602)
Q Consensus 83 ~~~~~~~~e~~~~~gv-~~~viis~Gf~E~-~~~~l~~~a~~~g~r 126 (602)
......++.+..=+.. +++++|-.+=++. +++.|++..++..++
T Consensus 208 T~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~ 253 (324)
T COG0111 208 TPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIA 253 (324)
T ss_pred CcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcc
Confidence 6544433332221122 3445555444444 788898888876555
No 172
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=80.18 E-value=3.3 Score=43.96 Aligned_cols=80 Identities=25% Similarity=0.316 Sum_probs=60.0
Q ss_pred cEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEe-cCCC--cHHHHHHHHH
Q 007482 163 SVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGE-LGGR--DEYSLVEALK 239 (602)
Q Consensus 163 ~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E-~g~~--~~~~f~~~~r 239 (602)
.|++|.-+|.+.. .+.+.+ .++ .-+..+.|+....||++|.|+|.++ ||+. ..+...+.++
T Consensus 60 ~Iavi~~~G~I~~--------~~~~~~---~~~-----~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~ 123 (317)
T COG0616 60 VIAVIHVEGAIVA--------GGGPLR---FIG-----GDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALK 123 (317)
T ss_pred EEEEEEeeeeeec--------CCCccc---ccc-----HHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHH
Confidence 5999999997742 233333 333 4457899999999999999999999 4443 2467788888
Q ss_pred hcCCCCCEEEEEeCcCccC
Q 007482 240 QGKVNKPVVAWVSGTCARL 258 (602)
Q Consensus 240 ~~~~~KPVv~~k~Gr~~~g 258 (602)
+.+..|||+++-.+-..+|
T Consensus 124 ~l~~~~PV~v~v~~~AASG 142 (317)
T COG0616 124 RLRAKKPVVVSVGGYAASG 142 (317)
T ss_pred HHhhcCCEEEEECCeecch
Confidence 8886679999988877665
No 173
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=80.10 E-value=44 Score=32.16 Aligned_cols=189 Identities=7% Similarity=0.012 Sum_probs=103.4
Q ss_pred cccccCCHHHHhhc--CCCccEEEEecCChh-hHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCc
Q 007482 56 AIPVHSTVEAACAA--HPMADVFINFSSFRS-AAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPAT 132 (602)
Q Consensus 56 G~~~y~sv~~i~~~--~p~vDlavi~vp~~~-~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc 132 (602)
+...+..+.+...+ . .+++.+....... .....++.+.+.++.++++... ...... +.+.+++.++.++.+++
T Consensus 15 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~--~~~~~~-~~~~~~~~~ip~v~~~~ 90 (269)
T cd01391 15 GAQLLAGIELAAEEIGR-GLEVILADSQSDPERALEALRDLIQQGVDGIIGPPS--SSSALA-VVELAAAAGIPVVSLDA 90 (269)
T ss_pred HHHHHHHHHHHHHHhCC-ceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEecCC--CHHHHH-HHHHHHHcCCcEEEecC
Confidence 34555556665554 3 3666655443321 2344555555568877665432 222222 77788899999888876
Q ss_pred cccc---ccCcccccccCCccccc---c--cccCCCCCcEEEEecCh-hHH----HHHHHHHHhcCCceeEEeeccCCCC
Q 007482 133 VGGI---QAGAFKIGDTAGTIDNI---I--HCKLYRPGSVGFVSKSG-GMS----NELYNTIARVTDGIYEGIAIGGDVF 199 (602)
Q Consensus 133 ~G~~---~~~~~~l~~~~~~~~~~---~--p~~~~~~G~valvSQSG-~l~----~~~~~~~~~~g~G~s~~vs~Gn~~~ 199 (602)
..-. .+....+ ....... . -.......+|+++.... ... ..+.+.+.+.++-+..........
T Consensus 91 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 166 (269)
T cd01391 91 TAPDLTGYPYVFRV---GPDNEQAGEAAAEYLAEKGWKRVALIYGDDGAYGRERLEGFKAALKKAGIEVVAIEYGDLDT- 166 (269)
T ss_pred CCCccCCCceEEEE---cCCcHHHHHHHHHHHHHhCCceEEEEecCCcchhhHHHHHHHHHHHhcCcEEEeccccCCCc-
Confidence 4321 0111011 0000000 0 00112477899997766 332 223344455564444444444343
Q ss_pred CCCCHHHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHhcCCC-CCEEEEEeCcCc
Q 007482 200 PGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVN-KPVVAWVSGTCA 256 (602)
Q Consensus 200 ~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~~~-KPVv~~k~Gr~~ 256 (602)
+-++..+.+.+.+.|+.++|++... .....+++++++.... +.+.++-.+.+.
T Consensus 167 -~~~~~~~~~~l~~~~~~~~i~~~~~---~~a~~~~~~~~~~g~~~~~~~ii~~~~~~ 220 (269)
T cd01391 167 -EKGFQALLQLLKAAPKPDAIFACND---EMAAGALKAAREAGLTPGDISIIGFDGSP 220 (269)
T ss_pred -cccHHHHHHHHhcCCCCCEEEEcCc---hHHHHHHHHHHHcCCCCCCCEEEeccccc
Confidence 4678889999999888888887665 6678888988886532 445555444333
No 174
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=79.97 E-value=1e+02 Score=35.32 Aligned_cols=200 Identities=14% Similarity=0.086 Sum_probs=116.4
Q ss_pred cEEEEeeCC--cH-HHHHHHh-cCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHh---hcCCCccEEEEecCCh
Q 007482 11 TQALFYNYK--QL-PIQRMLD-FDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAAC---AAHPMADVFINFSSFR 83 (602)
Q Consensus 11 s~avv~g~~--~~-~~~~~~~-~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~---~~~p~vDlavi~vp~~ 83 (602)
+.++|-|++ |. .++.|.. ..|..|+-++ +.. ..+|.++.|+|+|.+.+ +. ++. .+|..+|++|..
T Consensus 117 ~r~lIiGAG~ag~~l~r~~~~~~~~~pV~fiD-dd~-----~~~g~~i~Gv~V~g~~~-i~~~v~~~-~~~~iiiAips~ 188 (588)
T COG1086 117 IRLLIIGAGSAGDLLLRALRRDPEYTPVAFLD-DDP-----DLTGMKIRGVPVLGRIE-IERVVEEL-GIQLILIAIPSA 188 (588)
T ss_pred CceEEEcCchHHHHHHHHHHhCCCcceEEEEC-CCh-----hhcCCEEeceeeechhH-HHHHHHHc-CCceEEEecCCC
Confidence 334444543 33 6777776 3477676665 422 35678999999999876 54 345 489999999984
Q ss_pred h--hHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHH---HHhCCC-eeEcCCcccccccCcccccccCCccccccccc
Q 007482 84 S--AAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAY---ARSNNK-VVIGPATVGGIQAGAFKIGDTAGTIDNIIHCK 157 (602)
Q Consensus 84 ~--~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~---a~~~g~-riiGPNc~G~~~~~~~~l~~~~~~~~~~~p~~ 157 (602)
. ....+++.|.+.|++.-++ . .+ .++.+. .|+-.+ .++|=.. . .+ .+. ...
T Consensus 189 ~~~~~~~i~~~l~~~~~~v~~l-P-~~-----~~l~~~~~~lreI~ieDLLgR~p-------V-~~-----d~~---~i~ 245 (588)
T COG1086 189 SQEERRRILLRLARTGIAVRIL-P-QL-----TDLKDLNGQLREIEIEDLLGRPP-------V-AL-----DTE---LIG 245 (588)
T ss_pred CHHHHHHHHHHHHhcCCcEEec-C-cH-----HHHHHhccccccCCHHHHhCCCC-------C-CC-----CHH---HHH
Confidence 3 2356889999888764443 2 12 222220 111111 1222110 0 11 010 001
Q ss_pred CCCCCcEEEEec-ChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHHHHHH
Q 007482 158 LYRPGSVGFVSK-SGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVE 236 (602)
Q Consensus 158 ~~~~G~valvSQ-SG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~ 236 (602)
..-.|+.-+|+- .|++++++..+..+. +..+.+=.+.+- ...-++-..|.+.-....+..|+= .++|-++..+
T Consensus 246 ~~~~gK~vLVTGagGSiGsel~~qil~~--~p~~i~l~~~~E---~~~~~i~~el~~~~~~~~~~~~ig-dVrD~~~~~~ 319 (588)
T COG1086 246 AMLTGKTVLVTGGGGSIGSELCRQILKF--NPKEIILFSRDE---YKLYLIDMELREKFPELKLRFYIG-DVRDRDRVER 319 (588)
T ss_pred hHcCCCEEEEeCCCCcHHHHHHHHHHhc--CCCEEEEecCch---HHHHHHHHHHHhhCCCcceEEEec-ccccHHHHHH
Confidence 124566667665 567899999887766 556666666553 234455555555422445666777 7899888888
Q ss_pred HHHhcCCCCCEEEE
Q 007482 237 ALKQGKVNKPVVAW 250 (602)
Q Consensus 237 ~~r~~~~~KPVv~~ 250 (602)
+.+. -||=+++
T Consensus 320 ~~~~---~kvd~Vf 330 (588)
T COG1086 320 AMEG---HKVDIVF 330 (588)
T ss_pred HHhc---CCCceEE
Confidence 8775 4677777
No 175
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=79.93 E-value=5.4 Score=40.70 Aligned_cols=97 Identities=10% Similarity=-0.013 Sum_probs=56.1
Q ss_pred cEEEEe-eCCcH-HHHHHHhcCCeE--EEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhH
Q 007482 11 TQALFY-NYKQL-PIQRMLDFDFLC--VAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAA 86 (602)
Q Consensus 11 s~avv~-g~~~~-~~~~~~~~g~~~--V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~ 86 (602)
++.+|| |..|. +.+.+++.|+.. |...+ +... +.+.+ .....|...+.+..++.+ +.|++++++|+. ..
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~-r~~~-~~~~l-~~~~~~~~~~~~~~~~~~---~aDvVilav~p~-~~ 74 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSP-RNAQ-IAARL-AERFPKVRIAKDNQAVVD---RSDVVFLAVRPQ-IA 74 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEEC-CCHH-HHHHH-HHHcCCceEeCCHHHHHH---hCCEEEEEeCHH-HH
Confidence 578886 33333 778888877643 22222 2111 11111 011224667788888765 379999999975 46
Q ss_pred HHHHHHhhCCCCcEEEEecCCCCHHHHH
Q 007482 87 ASSMAALKQPTIRVVAIIAEGVPEADTK 114 (602)
Q Consensus 87 ~~~~e~~~~~gv~~~viis~Gf~E~~~~ 114 (602)
..+++++..+.=+.+|-+++|.+-...+
T Consensus 75 ~~vl~~l~~~~~~~vis~~ag~~~~~l~ 102 (258)
T PRK06476 75 EEVLRALRFRPGQTVISVIAATDRAALL 102 (258)
T ss_pred HHHHHHhccCCCCEEEEECCCCCHHHHH
Confidence 7777776422334566667787654333
No 176
>PLN02712 arogenate dehydrogenase
Probab=79.59 E-value=4.7 Score=47.27 Aligned_cols=77 Identities=10% Similarity=0.198 Sum_probs=49.1
Q ss_pred CCCcEEEEe-e-CCcHHHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhh
Q 007482 8 SKTTQALFY-N-YKQLPIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSA 85 (602)
Q Consensus 8 ~p~s~avv~-g-~~~~~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~ 85 (602)
++++++||| | +++.+.+.|.+.|++++ +.+ +...... ..-.|+..+.+..++... +.|+++++||.. .
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~-~~d-r~~~~~~-----A~~~Gv~~~~d~~e~~~~--~aDvViLavP~~-~ 120 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVL-AHS-RSDHSLA-----ARSLGVSFFLDPHDLCER--HPDVILLCTSII-S 120 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEE-EEe-CCHHHHH-----HHHcCCEEeCCHHHHhhc--CCCEEEEcCCHH-H
Confidence 346789886 3 33337788888898763 444 3221100 122466678888885432 379999999986 4
Q ss_pred HHHHHHHhh
Q 007482 86 AASSMAALK 94 (602)
Q Consensus 86 ~~~~~e~~~ 94 (602)
...++++..
T Consensus 121 ~~~vl~~l~ 129 (667)
T PLN02712 121 TENVLKSLP 129 (667)
T ss_pred HHHHHHhhh
Confidence 777887764
No 177
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=79.58 E-value=3.8 Score=41.85 Aligned_cols=93 Identities=19% Similarity=0.127 Sum_probs=56.4
Q ss_pred CcEEEEe-eCCcH-HHHHHHhcC---CeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChh
Q 007482 10 TTQALFY-NYKQL-PIQRMLDFD---FLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRS 84 (602)
Q Consensus 10 ~s~avv~-g~~~~-~~~~~~~~g---~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~ 84 (602)
++++||| |..|. +.+.+.+.| +. |...+ +.... .+.+ .+-.|+.+..+..++.+ +.|++++++|+..
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~-v~v~~-r~~~~-~~~~--~~~~g~~~~~~~~~~~~---~advVil~v~~~~ 74 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKD-IIVSD-PSPEK-RAAL--AEEYGVRAATDNQEAAQ---EADVVVLAVKPQV 74 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcce-EEEEc-CCHHH-HHHH--HHhcCCeecCChHHHHh---cCCEEEEEcCHHH
Confidence 4688887 43344 777777777 33 33333 32211 1111 01125667778887654 4799999999874
Q ss_pred hHHHHHHHhhCCCCcEEEEecCCCCHH
Q 007482 85 AAASSMAALKQPTIRVVAIIAEGVPEA 111 (602)
Q Consensus 85 ~~~~~~e~~~~~gv~~~viis~Gf~E~ 111 (602)
+.++++.+...-=+.+|-+++|++..
T Consensus 75 -~~~v~~~l~~~~~~~vvs~~~gi~~~ 100 (267)
T PRK11880 75 -MEEVLSELKGQLDKLVVSIAAGVTLA 100 (267)
T ss_pred -HHHHHHHHHhhcCCEEEEecCCCCHH
Confidence 78888887642214566778898754
No 178
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=79.53 E-value=26 Score=35.20 Aligned_cols=107 Identities=15% Similarity=0.161 Sum_probs=67.8
Q ss_pred cEEEEe-e-CCcHHHHHHHhcCCe--EEEEEeCCCCCCccccccCceeeccccc-CCHHHHhhcCCCccEEEEecCChhh
Q 007482 11 TQALFY-N-YKQLPIQRMLDFDFL--CVAGIINPGAEGFQKLFFGQEEIAIPVH-STVEAACAAHPMADVFINFSSFRSA 85 (602)
Q Consensus 11 s~avv~-g-~~~~~~~~~~~~g~~--~V~gv~~p~~~~~~~~~~g~~v~G~~~y-~sv~~i~~~~p~vDlavi~vp~~~~ 85 (602)
.++++. | .+.|...|+.-.+|. +|+-..||... +-| ..-+|.++..|+.|++|-..-.+..
T Consensus 3 ki~vlt~g~yG~R~~~nl~~~~f~~~~v~v~~~Pe~~--------------~~fie~P~~~Lp~~~e~Di~va~~lHPDl 68 (224)
T COG1810 3 KILVLTDGEYGKRAVNNLACKGFKNQFVAVKEYPEEL--------------PDFIEEPEDLLPKLPEADIVVAYGLHPDL 68 (224)
T ss_pred EEEEEeeccchHHHHHhHhhhccccceEEEEeccccc--------------cchhhCHHHhcCCCCCCCEEEEeccCccH
Confidence 455665 3 566688888886654 46666655221 111 1234555544679999866333333
Q ss_pred HHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCc
Q 007482 86 AASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPAT 132 (602)
Q Consensus 86 ~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc 132 (602)
..+..|.+...|++++| +.++=++-..++|.+.+.+.|+.+.=|.-
T Consensus 69 ~~~L~e~~~~~~~~alI-vp~~~~~g~rkqL~~~~~~~g~e~~~p~p 114 (224)
T COG1810 69 LLALPEKAAEGGVKALI-VPAEPPEGLRKQLKEFCEELGVEFEAPEP 114 (224)
T ss_pred HHHHHHHHHhCCccEEE-EecCCChhHHHHHHHHhhhcceeeecCCc
Confidence 45555655667887555 56666777889999999999999877654
No 179
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=79.44 E-value=2.5 Score=40.83 Aligned_cols=108 Identities=16% Similarity=0.168 Sum_probs=62.7
Q ss_pred CCCCCCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCC
Q 007482 5 QLFSKTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSF 82 (602)
Q Consensus 5 ~l~~p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~ 82 (602)
.-+.-+++.|+| |..|+ +.+.+..+|.+++ +.+ |..... . +....+. .|.+++|+.+. .|++++.+|.
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~-~~d-~~~~~~--~--~~~~~~~-~~~~l~ell~~---aDiv~~~~pl 101 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGMRVI-GYD-RSPKPE--E--GADEFGV-EYVSLDELLAQ---ADIVSLHLPL 101 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT-EEE-EEE-SSCHHH--H--HHHHTTE-EESSHHHHHHH----SEEEE-SSS
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCceeE-Eec-ccCChh--h--hcccccc-eeeehhhhcch---hhhhhhhhcc
Confidence 345677888886 44455 6677777999864 444 422110 0 0012334 56799998874 7999999995
Q ss_pred hhh-----HHHHHHHhhCCCCcEEEEecCCCCHH-HHHHHHHHHHhCCCe
Q 007482 83 RSA-----AASSMAALKQPTIRVVAIIAEGVPEA-DTKQLIAYARSNNKV 126 (602)
Q Consensus 83 ~~~-----~~~~~e~~~~~gv~~~viis~Gf~E~-~~~~l~~~a~~~g~r 126 (602)
... -.+.++.+. + .+++|-.+=++. +++.|++..++..++
T Consensus 102 t~~T~~li~~~~l~~mk-~---ga~lvN~aRG~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 102 TPETRGLINAEFLAKMK-P---GAVLVNVARGELVDEDALLDALESGKIA 147 (178)
T ss_dssp STTTTTSBSHHHHHTST-T---TEEEEESSSGGGB-HHHHHHHHHTTSEE
T ss_pred ccccceeeeeeeeeccc-c---ceEEEeccchhhhhhhHHHHHHhhccCc
Confidence 321 134566665 2 345555555555 788898888875544
No 180
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=79.40 E-value=9.2 Score=39.83 Aligned_cols=114 Identities=15% Similarity=0.182 Sum_probs=71.0
Q ss_pred EEEeeC--CcH-HHHHHHhc-CCeEEEEEeCC--CCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhH
Q 007482 13 ALFYNY--KQL-PIQRMLDF-DFLCVAGIINP--GAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAA 86 (602)
Q Consensus 13 avv~g~--~~~-~~~~~~~~-g~~~V~gv~~p--~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~ 86 (602)
+|+.|. -|. .++-++.. ++++|+.+++- +.+++..++.|..-.|+.+-.++.+..... .|.++ ..+-...+
T Consensus 5 vvqyGtG~vGv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~dlgV~a~~~~~avlAtl--~~~~~-y~~~~~~~ 81 (350)
T COG3804 5 VVQYGTGSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLPDLGVIATNSIDAVLATL--ADAVI-YAPLLPSV 81 (350)
T ss_pred eEEeccchHHHHHHHHHHcCCCCceEEEEecCcccccccHHHhcCCCCceeEeecccccceecc--cccee-eecccchH
Confidence 444453 344 77888886 99999888862 555688888886668888888877655422 23333 33332224
Q ss_pred HHHHHHhhCCCCcEEEE-----ecCCCCHHHHHHHHHHHHhCCC-eeEcC
Q 007482 87 ASSMAALKQPTIRVVAI-----IAEGVPEADTKQLIAYARSNNK-VVIGP 130 (602)
Q Consensus 87 ~~~~e~~~~~gv~~~vi-----is~Gf~E~~~~~l~~~a~~~g~-riiGP 130 (602)
++.-+ |-.+|+.-+-- +.-+...++.+++.+.|.++|. .+.|-
T Consensus 82 ~~y~r-lL~aGiNVv~~g~~l~yPw~~~PelaeKpl~lAaraGn~Tl~gt 130 (350)
T COG3804 82 DEYAR-LLRAGINVVTPGPVLQYPWFYPPELAEKPLELAARAGNATLHGT 130 (350)
T ss_pred HHHHH-HHHcCCceeccCccccCCCcCChHHhhchHHHHHhcCCceEEec
Confidence 55444 54588862211 1123345578889999998887 67664
No 181
>PRK06436 glycerate dehydrogenase; Provisional
Probab=79.36 E-value=10 Score=40.05 Aligned_cols=102 Identities=11% Similarity=0.094 Sum_probs=62.5
Q ss_pred CCCCCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecc-cccCCHHHHhhcCCCccEEEEecCC
Q 007482 6 LFSKTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAI-PVHSTVEAACAAHPMADVFINFSSF 82 (602)
Q Consensus 6 l~~p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~-~~y~sv~~i~~~~p~vDlavi~vp~ 82 (602)
.+.-+++.|+| |..|+ +.+.+..+|++++ +.+ +... + .|. +.|.+++++.+ +.|++++++|.
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~~V~-~~~-r~~~---------~-~~~~~~~~~l~ell~---~aDiv~~~lp~ 183 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGMNIY-AYT-RSYV---------N-DGISSIYMEPEDIMK---KSDFVLISLPL 183 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEE-EEC-CCCc---------c-cCcccccCCHHHHHh---hCCEEEECCCC
Confidence 45567888886 55566 6666666899864 454 4211 0 122 24789999876 47999999997
Q ss_pred hhhHH-----HHHHHhhCCCCcEEEEecCCCCH-HHHHHHHHHHHhCCCe
Q 007482 83 RSAAA-----SSMAALKQPTIRVVAIIAEGVPE-ADTKQLIAYARSNNKV 126 (602)
Q Consensus 83 ~~~~~-----~~~e~~~~~gv~~~viis~Gf~E-~~~~~l~~~a~~~g~r 126 (602)
..... ..++.+. . .+++|-.+-.+ .+++.|.+..++..+.
T Consensus 184 t~~T~~li~~~~l~~mk-~---ga~lIN~sRG~~vd~~aL~~aL~~g~i~ 229 (303)
T PRK06436 184 TDETRGMINSKMLSLFR-K---GLAIINVARADVVDKNDMLNFLRNHNDK 229 (303)
T ss_pred CchhhcCcCHHHHhcCC-C---CeEEEECCCccccCHHHHHHHHHcCCce
Confidence 54333 3344444 2 33444333333 3788888888876544
No 182
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=79.06 E-value=8.4 Score=40.49 Aligned_cols=80 Identities=11% Similarity=0.015 Sum_probs=49.3
Q ss_pred CCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhH
Q 007482 9 KTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAA 86 (602)
Q Consensus 9 p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~ 86 (602)
.+++.|+| |..|. +.++|.+.|+++. ..+ ... + .+++++.. +.|++++++|.. .+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~-~~~-r~~----------~-------~~~~~~~~---~advvi~~vp~~-~~ 60 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVR-VWS-RRS----------G-------LSLAAVLA---DADVIVSAVSMK-GV 60 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEE-EEe-CCC----------C-------CCHHHHHh---cCCEEEEECChH-HH
Confidence 46788887 44454 7778888999852 222 111 1 46777655 479999999986 57
Q ss_pred HHHHHHhhCCCC--cEEE-EecCCCCHH
Q 007482 87 ASSMAALKQPTI--RVVA-IIAEGVPEA 111 (602)
Q Consensus 87 ~~~~e~~~~~gv--~~~v-iis~Gf~E~ 111 (602)
..+++.+..... +.++ -.+.|+...
T Consensus 61 ~~v~~~l~~~~~~~~~ivi~~s~gi~~~ 88 (308)
T PRK14619 61 RPVAEQVQALNLPPETIIVTATKGLDPE 88 (308)
T ss_pred HHHHHHHHHhcCCCCcEEEEeCCcccCC
Confidence 888777753221 2233 334466544
No 183
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=78.91 E-value=6.3 Score=44.86 Aligned_cols=112 Identities=11% Similarity=0.059 Sum_probs=65.6
Q ss_pred CCCCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChh
Q 007482 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRS 84 (602)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~ 84 (602)
+.=+++.||| |..|+ +.+.+..+|++++ +.+ |....+. ..-.|.+.+.++.|+.+ +.|++++++|...
T Consensus 136 l~gktvgIiG~G~IG~~vA~~l~~fG~~V~-~~d-~~~~~~~-----~~~~g~~~~~~l~ell~---~aDvV~l~lPlt~ 205 (525)
T TIGR01327 136 LYGKTLGVIGLGRIGSIVAKRAKAFGMKVL-AYD-PYISPER-----AEQLGVELVDDLDELLA---RADFITVHTPLTP 205 (525)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEC-CCCChhH-----HHhcCCEEcCCHHHHHh---hCCEEEEccCCCh
Confidence 3446788886 44455 7777888999864 454 4211100 12235565678999876 4799999999754
Q ss_pred hHHHHH--HHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeE
Q 007482 85 AAASSM--AALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVI 128 (602)
Q Consensus 85 ~~~~~~--e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~rii 128 (602)
....++ +.....+-..++|-++-=+-.+++.|.+..++..++-.
T Consensus 206 ~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gA 251 (525)
T TIGR01327 206 ETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAA 251 (525)
T ss_pred hhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEE
Confidence 333333 22332222334443432233388889988888766533
No 184
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=78.90 E-value=4.1 Score=37.45 Aligned_cols=105 Identities=14% Similarity=0.008 Sum_probs=53.8
Q ss_pred CcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCC--CccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhh
Q 007482 10 TTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAE--GFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSA 85 (602)
Q Consensus 10 ~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~--~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~ 85 (602)
.++.||| |.-|. +.+.+.+-|+.++ ++.-.... .+.. ..+.+.+ +.++.|+.+ +.|+.+|+||.. .
T Consensus 11 l~I~iIGaGrVG~~La~aL~~ag~~v~-~v~srs~~sa~~a~----~~~~~~~-~~~~~~~~~---~aDlv~iavpDd-a 80 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARAGHEVV-GVYSRSPASAERAA----AFIGAGA-ILDLEEILR---DADLVFIAVPDD-A 80 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHTTSEEE-EESSCHH-HHHHHH----C--TT------TTGGGC---C-SEEEE-S-CC-H
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEE-EEEeCCcccccccc----ccccccc-ccccccccc---cCCEEEEEechH-H
Confidence 3677886 33344 6677777899864 44212111 1111 1223333 445667654 489999999987 5
Q ss_pred HHHHHHHhhCC---CCcEEEEecCCCCHHHHHHHHHHHHhCCCee
Q 007482 86 AASSMAALKQP---TIRVVAIIAEGVPEADTKQLIAYARSNNKVV 127 (602)
Q Consensus 86 ~~~~~e~~~~~---gv~~~viis~Gf~E~~~~~l~~~a~~~g~ri 127 (602)
...+.+++.+. .-..+|+=+||= .-.++++=+++.|..+
T Consensus 81 I~~va~~La~~~~~~~g~iVvHtSGa---~~~~vL~p~~~~Ga~~ 122 (127)
T PF10727_consen 81 IAEVAEQLAQYGAWRPGQIVVHTSGA---LGSDVLAPARERGAIV 122 (127)
T ss_dssp HHHHHHHHHCC--S-TT-EEEES-SS-----GGGGHHHHHTT-EE
T ss_pred HHHHHHHHHHhccCCCCcEEEECCCC---ChHHhhhhHHHCCCeE
Confidence 88888888865 245678888884 2234455556666543
No 185
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=78.79 E-value=9.6 Score=40.72 Aligned_cols=109 Identities=11% Similarity=0.014 Sum_probs=62.1
Q ss_pred CCCCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChh
Q 007482 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRS 84 (602)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~ 84 (602)
+.=++++||| |..|+ ..+.+..+|++++ +.+ +.... .........++.++.+ +.|++++++|...
T Consensus 144 l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~-~~d-~~~~~--------~~~~~~~~~~l~ell~---~aDiVil~lP~t~ 210 (330)
T PRK12480 144 VKNMTVAIIGTGRIGAATAKIYAGFGATIT-AYD-AYPNK--------DLDFLTYKDSVKEAIK---DADIISLHVPANK 210 (330)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEe-CChhH--------hhhhhhccCCHHHHHh---cCCEEEEeCCCcH
Confidence 3445788887 44455 6777778999864 443 32210 1111233358888876 4799999999764
Q ss_pred hHHHHH-HHhhCCCCcEEEEecCCCCHH-HHHHHHHHHHhCCCeeE
Q 007482 85 AAASSM-AALKQPTIRVVAIIAEGVPEA-DTKQLIAYARSNNKVVI 128 (602)
Q Consensus 85 ~~~~~~-e~~~~~gv~~~viis~Gf~E~-~~~~l~~~a~~~g~rii 128 (602)
.....+ +...++=-+.+++|..+=++. +++.|++..++..++-.
T Consensus 211 ~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~ga 256 (330)
T PRK12480 211 ESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGA 256 (330)
T ss_pred HHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEE
Confidence 222222 222211113445555554444 78888888887655433
No 186
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=78.15 E-value=10 Score=41.14 Aligned_cols=114 Identities=18% Similarity=0.114 Sum_probs=60.8
Q ss_pred cEEEEee--CCcH-HHHHHHh-cCCe---EEEEEeCCCCCCccccccCceeecccccC--CHHHHhhcCCCccEEEEecC
Q 007482 11 TQALFYN--YKQL-PIQRMLD-FDFL---CVAGIINPGAEGFQKLFFGQEEIAIPVHS--TVEAACAAHPMADVFINFSS 81 (602)
Q Consensus 11 s~avv~g--~~~~-~~~~~~~-~g~~---~V~gv~~p~~~~~~~~~~g~~v~G~~~y~--sv~~i~~~~p~vDlavi~vp 81 (602)
++||||+ ..|+ +++.+++ -.|. ++. ......+++.-.|.|.+ ..++. +..+. . ++|+++.++|
T Consensus 3 ~VAIVGATG~vG~ell~llL~~~~f~~~~l~~-~ss~~sg~~~~~f~g~~---~~v~~~~~~~~~-~---~~Divf~a~~ 74 (369)
T PRK06598 3 KVGFVGWRGMVGSVLMQRMVEENDFDLIEPVF-FSTSQAGGAAPSFGGKE---GTLQDAFDIDAL-K---KLDIIITCQG 74 (369)
T ss_pred EEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEE-ecchhhCCcccccCCCc---ceEEecCChhHh-c---CCCEEEECCC
Confidence 6889963 4455 4443555 4555 332 33222222222333322 13332 22332 2 4899999998
Q ss_pred ChhhHHHHHHHhhCCCCcEEEEe-cCCC----------CHHHHHHHHHHHHhCCC-eeEcCCccc
Q 007482 82 FRSAAASSMAALKQPTIRVVAII-AEGV----------PEADTKQLIAYARSNNK-VVIGPATVG 134 (602)
Q Consensus 82 ~~~~~~~~~e~~~~~gv~~~vii-s~Gf----------~E~~~~~l~~~a~~~g~-riiGPNc~G 134 (602)
.. +.......+.++|++.+||= |+-| ||--.+.|.. ..+.|+ .|..|||.=
T Consensus 75 ~~-~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~-~~~~g~~iIanPnC~t 137 (369)
T PRK06598 75 GD-YTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDD-ALANGVKTFVGGNCTV 137 (369)
T ss_pred HH-HHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHh-hhhcCCCEEEcCChHH
Confidence 86 45666666766888744443 4434 3333345544 335676 588999953
No 187
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=78.11 E-value=8 Score=39.64 Aligned_cols=91 Identities=8% Similarity=0.024 Sum_probs=56.2
Q ss_pred CcEEEEe-e-CCcHHHHHHHhcCC---eEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChh
Q 007482 10 TTQALFY-N-YKQLPIQRMLDFDF---LCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRS 84 (602)
Q Consensus 10 ~s~avv~-g-~~~~~~~~~~~~g~---~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~ 84 (602)
+++++|| | +++.+.+.|++.+. .-|.+.+ ++.. . .+.....+..++.+ +.|++++++|+..
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~-~~~~---------~-~~~~~~~~~~~~~~---~~D~Vilavkp~~ 69 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHT-PSKK---------N-TPFVYLQSNEELAK---TCDIIVLAVKPDL 69 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEEC-CChh---------c-CCeEEeCChHHHHH---hCCEEEEEeCHHH
Confidence 5788887 3 33347777877652 1244443 4332 1 13334456666544 4799999999875
Q ss_pred hHHHHHHHhhC-CCCcEEEEecCCCCHHHHHH
Q 007482 85 AAASSMAALKQ-PTIRVVAIIAEGVPEADTKQ 115 (602)
Q Consensus 85 ~~~~~~e~~~~-~gv~~~viis~Gf~E~~~~~ 115 (602)
+.++++++.. ..-+.+|.+.+|++....++
T Consensus 70 -~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~ 100 (260)
T PTZ00431 70 -AGKVLLEIKPYLGSKLLISICGGLNLKTLEE 100 (260)
T ss_pred -HHHHHHHHHhhccCCEEEEEeCCccHHHHHH
Confidence 7888888763 12356788889998654433
No 188
>PRK08655 prephenate dehydrogenase; Provisional
Probab=77.91 E-value=9.7 Score=42.32 Aligned_cols=111 Identities=10% Similarity=0.033 Sum_probs=60.2
Q ss_pred CcEEEEee--CCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhH
Q 007482 10 TTQALFYN--YKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAA 86 (602)
Q Consensus 10 ~s~avv~g--~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~ 86 (602)
++++|||| ..|. ..+.+.+.|+.++ +.. ..... .... ..-.|+....+..+... +.|++|+++|... .
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~-v~~-r~~~~-~~~~--a~~~gv~~~~~~~e~~~---~aDvVIlavp~~~-~ 71 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVI-VTG-RDPKK-GKEV--AKELGVEYANDNIDAAK---DADIVIISVPINV-T 71 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEE-EEE-CChHH-HHHH--HHHcCCeeccCHHHHhc---cCCEEEEecCHHH-H
Confidence 46889974 3333 7778888888752 332 21110 0000 01235555667766554 4799999999875 5
Q ss_pred HHHHHHhhCC-CCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcC
Q 007482 87 ASSMAALKQP-TIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGP 130 (602)
Q Consensus 87 ~~~~e~~~~~-gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGP 130 (602)
..+++++... .-..+++-.+.......+.+.+.. ..+.+++|-
T Consensus 72 ~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~-~~~~~~V~~ 115 (437)
T PRK08655 72 EDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYA-PEGVEILPT 115 (437)
T ss_pred HHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhc-CCCCEEEEc
Confidence 6777777532 223344444445444444444433 235555554
No 189
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=77.76 E-value=13 Score=41.14 Aligned_cols=85 Identities=12% Similarity=0.086 Sum_probs=51.0
Q ss_pred CCcEEEEeeCCcH---HHHHHHh---cCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhh---cCCCccEEEEe
Q 007482 9 KTTQALFYNYKQL---PIQRMLD---FDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACA---AHPMADVFINF 79 (602)
Q Consensus 9 p~s~avv~g~~~~---~~~~~~~---~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~---~~p~vDlavi~ 79 (602)
.+.+.|| |.+.. ..+.+.+ .||++|+-++ +.... +..+.|+|++.+++|+.+ +. ++|.++++
T Consensus 125 ~~rvLIv-Gag~~a~~l~~~L~~~~~~g~~vvG~id-d~~~~------~~~i~g~pVlg~~~~l~~~i~~~-~id~ViIa 195 (445)
T TIGR03025 125 LRRVLIV-GTGEAARELAAALSRNPDLGYRVVGFVD-DRPSD------RVEVAGLPVLGKLDDLVELVRAH-RVDEVIIA 195 (445)
T ss_pred CCcEEEE-ECCHHHHHHHHHHhhCccCCeEEEEEEe-CCccc------ccccCCCcccCCHHHHHHHHHhC-CCCEEEEe
Confidence 3456666 54433 5555544 5788775554 42211 136788999988777542 34 48888888
Q ss_pred cCChh--hHHHHHHHhhCCCCcEEE
Q 007482 80 SSFRS--AAASSMAALKQPTIRVVA 102 (602)
Q Consensus 80 vp~~~--~~~~~~e~~~~~gv~~~v 102 (602)
.|... ....+++.|.+.|++..+
T Consensus 196 ~p~~~~~~~~~ll~~~~~~gv~V~~ 220 (445)
T TIGR03025 196 LPLSEEARILELLLQLRDLGVDVRL 220 (445)
T ss_pred cCcccHHHHHHHHHHHHhcCCEEEE
Confidence 87643 123577778777776333
No 190
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=77.51 E-value=13 Score=41.34 Aligned_cols=87 Identities=15% Similarity=0.061 Sum_probs=52.2
Q ss_pred CcEEEEeeCCcH---HHHHHH---hcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHh---hcCCCccEEEEec
Q 007482 10 TTQALFYNYKQL---PIQRML---DFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAAC---AAHPMADVFINFS 80 (602)
Q Consensus 10 ~s~avv~g~~~~---~~~~~~---~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~---~~~p~vDlavi~v 80 (602)
+.++|| |.++. ..+.+. ..||++|+-++ .... -.|.++.|+|++.+ +|+. .+. ++|.++|++
T Consensus 126 rrvlIi-Gag~~~~~l~~~l~~~~~~g~~vvGfid-d~~~-----~~~~~i~g~pVlg~-~~l~~~i~~~-~id~ViIAi 196 (456)
T TIGR03022 126 RPAVII-GAGQNAAILYRALQSNPQLGLRPLAVVD-TDPA-----ASGRLLTGLPVVGA-DDALRLYART-RYAYVIVAM 196 (456)
T ss_pred ceEEEE-eCCHHHHHHHHHHhhCccCCcEEEEEEe-CCcc-----ccccccCCCcccCh-hHHHHHHHhC-CCCEEEEec
Confidence 445555 55443 445554 36788776554 3211 11246788999877 5543 223 589899998
Q ss_pred CC--hhhHHHHHHHhhCCCCcEEEEec
Q 007482 81 SF--RSAAASSMAALKQPTIRVVAIIA 105 (602)
Q Consensus 81 p~--~~~~~~~~e~~~~~gv~~~viis 105 (602)
|. ......+++.|.+.+++.+.++.
T Consensus 197 p~~~~~~~~~ll~~l~~~~v~~V~~vP 223 (456)
T TIGR03022 197 PGTQAEDMARLVRKLGALHFRNVLIVP 223 (456)
T ss_pred CCccHHHHHHHHHHHHhCCCeEEEEeC
Confidence 84 33356677788777775555544
No 191
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=77.46 E-value=6.4 Score=37.27 Aligned_cols=88 Identities=20% Similarity=0.161 Sum_probs=52.4
Q ss_pred EEEEeeCCcH----HHHHHHhcCCeEEEEEeCCCCCCccccccCceee--cccccCCHHHHhhcCCCccEEEEecCC---
Q 007482 12 QALFYNYKQL----PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEI--AIPVHSTVEAACAAHPMADVFINFSSF--- 82 (602)
Q Consensus 12 ~avv~g~~~~----~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~--G~~~y~sv~~i~~~~p~vDlavi~vp~--- 82 (602)
|+|+ |.+|. +++.|++.|++++..+--|.+- ..-.+-++. .+.-..++.+++. ++|.++.++++
T Consensus 1 I~V~-GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~---~~~~~~~~~~~d~~d~~~~~~al~---~~d~vi~~~~~~~~ 73 (183)
T PF13460_consen 1 ILVF-GATGFVGRALAKQLLRRGHEVTALVRSPSKA---EDSPGVEIIQGDLFDPDSVKAALK---GADAVIHAAGPPPK 73 (183)
T ss_dssp EEEE-TTTSHHHHHHHHHHHHTTSEEEEEESSGGGH---HHCTTEEEEESCTTCHHHHHHHHT---TSSEEEECCHSTTT
T ss_pred eEEE-CCCChHHHHHHHHHHHCCCEEEEEecCchhc---ccccccccceeeehhhhhhhhhhh---hcchhhhhhhhhcc
Confidence 4566 44443 8999999999875444312110 001111111 1222234555544 48999998874
Q ss_pred -hhhHHHHHHHhhCCCCcEEEEecC
Q 007482 83 -RSAAASSMAALKQPTIRVVAIIAE 106 (602)
Q Consensus 83 -~~~~~~~~e~~~~~gv~~~viis~ 106 (602)
......++++|.+.|++.+|++|+
T Consensus 74 ~~~~~~~~~~a~~~~~~~~~v~~s~ 98 (183)
T PF13460_consen 74 DVDAAKNIIEAAKKAGVKRVVYLSS 98 (183)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred cccccccccccccccccccceeeec
Confidence 223567888898889999998885
No 192
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=77.34 E-value=20 Score=33.30 Aligned_cols=61 Identities=13% Similarity=0.081 Sum_probs=43.6
Q ss_pred CccEEEEecCChh---hHHHHHHHhhCCCCcEEEEecCCC---CHHHHHHHHHHHHhCCC-eeEcCCc
Q 007482 72 MADVFINFSSFRS---AAASSMAALKQPTIRVVAIIAEGV---PEADTKQLIAYARSNNK-VVIGPAT 132 (602)
Q Consensus 72 ~vDlavi~vp~~~---~~~~~~e~~~~~gv~~~viis~Gf---~E~~~~~l~~~a~~~g~-riiGPNc 132 (602)
++|++.++.-... ....+++.+.+++.+.+.++-+|- ++.+.++..+.+++.|+ ++.+|++
T Consensus 54 ~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~ 121 (137)
T PRK02261 54 DADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGT 121 (137)
T ss_pred CCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCC
Confidence 4799887763322 345678888888776666666664 34467888888999997 5888876
No 193
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=76.86 E-value=7.8 Score=36.18 Aligned_cols=74 Identities=15% Similarity=0.152 Sum_probs=42.0
Q ss_pred HHHHHHh---cCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhh---cCCCccEEEEecCCh--hhHHHHHHHh
Q 007482 22 PIQRMLD---FDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACA---AHPMADVFINFSSFR--SAAASSMAAL 93 (602)
Q Consensus 22 ~~~~~~~---~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~---~~p~vDlavi~vp~~--~~~~~~~e~~ 93 (602)
..+.|.+ .||++++-++ +.... .+.++.|+|...+++|+++ +. ++|-++|+.|.. ..+..++++|
T Consensus 92 ~~~~l~~~~~~g~~vvg~~d-~~~~~-----~~~~~~~~~~lg~~~~l~~~~~~~-~id~v~ial~~~~~~~i~~ii~~~ 164 (175)
T PF13727_consen 92 LAEALRSNPRLGYRVVGFVD-DDPSD-----RGPEIDGVPVLGDLDDLPELVREH-DIDEVIIALPWSEEEQIKRIIEEL 164 (175)
T ss_dssp HHHHHHH--SSSEEEEEEE--S-GGG-----TT-EETTEEEE--GGGHHHHHHHH-T--EEEE--TTS-HHHHHHHHHHH
T ss_pred HHHHHHhhhhcCceEEEEEe-Cchhh-----ccCcccCceeEcCHHHHHHHHHhC-CCCEEEEEcCccCHHHHHHHHHHH
Confidence 4555544 8888775554 42211 1246788999988887754 34 489999999874 3345788899
Q ss_pred hCCCCcEEE
Q 007482 94 KQPTIRVVA 102 (602)
Q Consensus 94 ~~~gv~~~v 102 (602)
.+.+++--+
T Consensus 165 ~~~~v~v~~ 173 (175)
T PF13727_consen 165 ENHGVRVRV 173 (175)
T ss_dssp HTTT-EEEE
T ss_pred HhCCCEEEE
Confidence 988887443
No 194
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=76.12 E-value=2.3 Score=47.18 Aligned_cols=93 Identities=15% Similarity=0.051 Sum_probs=60.2
Q ss_pred CCCCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCC------CCCccccccCceeecccccCCHHHHhhcCCCccEEEE
Q 007482 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPG------AEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFIN 78 (602)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~------~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi 78 (602)
+.-++|+||| |..|+ ...||.+.|.+++.|.- ++ +..+. .+-.|.++ .++.|+.+ +.|++++
T Consensus 34 LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr-~~~id~~~~s~~k-----A~~dGF~v-~~~~Ea~~---~ADvVvi 103 (487)
T PRK05225 34 LKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALR-KEAIAEKRASWRK-----ATENGFKV-GTYEELIP---QADLVIN 103 (487)
T ss_pred hCCCEEEEEccCHHHHHHhCCCccccceeEEecc-ccccccccchHHH-----HHhcCCcc-CCHHHHHH---hCCEEEE
Confidence 5567899897 56666 67788889998765653 42 11000 11246665 57888876 5799999
Q ss_pred ecCChhhHHHHHHHhh-CCCCcEEEEecCCCCH
Q 007482 79 FSSFRSAAASSMAALK-QPTIRVVAIIAEGVPE 110 (602)
Q Consensus 79 ~vp~~~~~~~~~e~~~-~~gv~~~viis~Gf~E 110 (602)
++|... -..+-++.. ...-..++.+|-||..
T Consensus 104 LlPDt~-q~~v~~~i~p~LK~Ga~L~fsHGFni 135 (487)
T PRK05225 104 LTPDKQ-HSDVVRAVQPLMKQGAALGYSHGFNI 135 (487)
T ss_pred cCChHH-HHHHHHHHHhhCCCCCEEEecCCcee
Confidence 999864 344444333 2334578889999974
No 195
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=76.11 E-value=5.1 Score=39.83 Aligned_cols=55 Identities=25% Similarity=0.270 Sum_probs=39.1
Q ss_pred CCHHHHHHHhhcCCCccEEEEEEecCCCcH---HHHHHHHHhcC-CCCCEEEEEeCcCc
Q 007482 202 STLSDHILRFNNIPQVKMMVVLGELGGRDE---YSLVEALKQGK-VNKPVVAWVSGTCA 256 (602)
Q Consensus 202 v~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~---~~f~~~~r~~~-~~KPVv~~k~Gr~~ 256 (602)
-++.+.|+.+.+||++|+|+|.+.-...+. +++.+++++.+ .+||||++--|.+.
T Consensus 24 ~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~ 82 (211)
T cd07019 24 DTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAA 82 (211)
T ss_pred HHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeeh
Confidence 357788888999999999999988222232 34444444443 68999999988753
No 196
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=76.09 E-value=10 Score=40.05 Aligned_cols=97 Identities=10% Similarity=-0.002 Sum_probs=53.6
Q ss_pred CcEEEEe-eCCcH-HHHHHHhcCCeE-EEEEeCCC------CCC-ccccccCcee-ecccccCCHHHHhhcCCCccEEEE
Q 007482 10 TTQALFY-NYKQL-PIQRMLDFDFLC-VAGIINPG------AEG-FQKLFFGQEE-IAIPVHSTVEAACAAHPMADVFIN 78 (602)
Q Consensus 10 ~s~avv~-g~~~~-~~~~~~~~g~~~-V~gv~~p~------~~~-~~~~~~g~~v-~G~~~y~sv~~i~~~~p~vDlavi 78 (602)
++++|+| |.-|. ....|.+.|+++ +...+ +. ..+ ..+.+.|... .+++.+.+..+.... +.|+.++
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~-~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~Dliii 77 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRN-HTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSD--NATCIIL 77 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecC-HHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhC--CCCEEEE
Confidence 3588887 45555 555566678775 22221 10 000 0001112111 234456666665422 4799999
Q ss_pred ecCChhhHHHHHHHhhC-C--CCcEEEEecCCCCH
Q 007482 79 FSSFRSAAASSMAALKQ-P--TIRVVAIIAEGVPE 110 (602)
Q Consensus 79 ~vp~~~~~~~~~e~~~~-~--gv~~~viis~Gf~E 110 (602)
+||+.. ++.+++.+.. . .-..+++++.|+..
T Consensus 78 avks~~-~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 78 AVPTQQ-LRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred EeCHHH-HHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 999875 7888887763 1 12246778889954
No 197
>PRK08605 D-lactate dehydrogenase; Validated
Probab=75.88 E-value=10 Score=40.49 Aligned_cols=106 Identities=13% Similarity=-0.011 Sum_probs=60.4
Q ss_pred CCCCcEEEEe-eCCcH-HHHHH-HhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCCh
Q 007482 7 FSKTTQALFY-NYKQL-PIQRM-LDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFR 83 (602)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~~-~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~ 83 (602)
+.-+++.||| |.-|+ +.+.+ ..+|.++ .+.+ |..... . -.+.....+++++.+ +.|++++++|..
T Consensus 144 l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V-~~~d-~~~~~~---~----~~~~~~~~~l~ell~---~aDvIvl~lP~t 211 (332)
T PRK08605 144 IKDLKVAVIGTGRIGLAVAKIFAKGYGSDV-VAYD-PFPNAK---A----ATYVDYKDTIEEAVE---GADIVTLHMPAT 211 (332)
T ss_pred eCCCEEEEECCCHHHHHHHHHHHhcCCCEE-EEEC-CCccHh---H----HhhccccCCHHHHHH---hCCEEEEeCCCC
Confidence 4567888887 45555 45555 3367664 3554 422110 0 112344458998876 479999999986
Q ss_pred hhHHHH-----HHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCee
Q 007482 84 SAAASS-----MAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVV 127 (602)
Q Consensus 84 ~~~~~~-----~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~ri 127 (602)
.....+ ++.+. .| .++|-++-=...+++.|.+..++..++-
T Consensus 212 ~~t~~li~~~~l~~mk-~g--ailIN~sRG~~vd~~aL~~aL~~g~i~g 257 (332)
T PRK08605 212 KYNHYLFNADLFKHFK-KG--AVFVNCARGSLVDTKALLDALDNGLIKG 257 (332)
T ss_pred cchhhhcCHHHHhcCC-CC--cEEEECCCCcccCHHHHHHHHHhCCeeE
Confidence 544333 33333 33 3444443333447888888888766543
No 198
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=75.75 E-value=14 Score=39.40 Aligned_cols=116 Identities=13% Similarity=0.133 Sum_probs=61.2
Q ss_pred CcEEEEe--eCCcHHHHHHHh-cCCeE--E-EEEeCCCCCCcc-ccccCceeecccccCCHHHHhhcCCCccEEEEecCC
Q 007482 10 TTQALFY--NYKQLPIQRMLD-FDFLC--V-AGIINPGAEGFQ-KLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSF 82 (602)
Q Consensus 10 ~s~avv~--g~~~~~~~~~~~-~g~~~--V-~gv~~p~~~~~~-~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~ 82 (602)
.+++|+| |+-|+.+.++++ .+|.. + ..-+ ++..|++ .+|.+.+ .+++ .++.|.... .++|+++-+.+.
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS-~rSaG~~~~~f~~~~-~~v~--~~~~~~~~~-~~~Divf~~ag~ 76 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLAS-ARSAGKKYIEFGGKS-IGVP--EDAADEFVF-SDVDIVFFAAGG 76 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEec-ccccCCccccccCcc-ccCc--ccccccccc-ccCCEEEEeCch
Confidence 4688885 344454444444 46643 1 1112 2333333 4454433 2233 222332221 258999998887
Q ss_pred hhhHHHHHHHhhCCCCcEEEEe-cCCCCHH----------HHHHHHHHHHhCCCeeEcCCccc
Q 007482 83 RSAAASSMAALKQPTIRVVAII-AEGVPEA----------DTKQLIAYARSNNKVVIGPATVG 134 (602)
Q Consensus 83 ~~~~~~~~e~~~~~gv~~~vii-s~Gf~E~----------~~~~l~~~a~~~g~riiGPNc~G 134 (602)
.. .....+.+.++|+ +||= ||-|.-. -.+.|.+.-+ .|.-|.+|||.=
T Consensus 77 ~~-s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~-rg~IianpNCst 135 (334)
T COG0136 77 SV-SKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQK-RGFIIANPNCST 135 (334)
T ss_pred HH-HHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCcCHHHHHhhhh-CCCEEECCChHH
Confidence 64 4667777777882 3332 3445322 2445666555 556799999953
No 199
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=75.46 E-value=4.2 Score=46.90 Aligned_cols=82 Identities=17% Similarity=0.213 Sum_probs=54.9
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCc----HHHHH
Q 007482 160 RPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRD----EYSLV 235 (602)
Q Consensus 160 ~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~----~~~f~ 235 (602)
..++|++|.-+|.+...- +. .-.+|. -++.+.|+...+||++|+|+|.+. +..- .+...
T Consensus 306 ~~~~vavI~~~G~I~~~~-------~~----~~~~~~-----~~~~~~l~~a~~D~~VkaIVLrin-SpGGs~~ase~i~ 368 (584)
T TIGR00705 306 VQDKIGIVHLEGPIADGR-------DT----EGNTGG-----DTVAALLRVARSDPDIKAVVLRIN-SPGGSVFASEIIR 368 (584)
T ss_pred CCCeEEEEEEEEEEcCCC-------Cc----ccccCH-----HHHHHHHHHHhhCCCceEEEEEec-CCCCCHHHHHHHH
Confidence 467899999999774220 10 001122 246788999999999999999998 3321 34455
Q ss_pred HHHHhcC-CCCCEEEEEeCcCccC
Q 007482 236 EALKQGK-VNKPVVAWVSGTCARL 258 (602)
Q Consensus 236 ~~~r~~~-~~KPVv~~k~Gr~~~g 258 (602)
+++++.+ .+||||+...|....|
T Consensus 369 ~~i~~~~~~gKPVva~~~g~aaSg 392 (584)
T TIGR00705 369 RELARAQARGKPVIVSMGAMAASG 392 (584)
T ss_pred HHHHHHHhCCCcEEEEECCccccH
Confidence 5666555 5699999987765544
No 200
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=75.29 E-value=10 Score=41.78 Aligned_cols=106 Identities=9% Similarity=-0.087 Sum_probs=63.5
Q ss_pred CCCCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChh
Q 007482 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRS 84 (602)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~ 84 (602)
+.-+++.||| |.-|+ +.+.+..+|.+++ +.+ |... ....+...+.+++|+.. +.|.+++.+|...
T Consensus 149 L~gktvGIiG~G~IG~~vA~~~~~fGm~V~-~~d-~~~~--------~~~~~~~~~~~l~ell~---~sDiVslh~Plt~ 215 (409)
T PRK11790 149 VRGKTLGIVGYGHIGTQLSVLAESLGMRVY-FYD-IEDK--------LPLGNARQVGSLEELLA---QSDVVSLHVPETP 215 (409)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEC-CCcc--------cccCCceecCCHHHHHh---hCCEEEEcCCCCh
Confidence 4556888886 54455 7777777999864 444 4221 11123333458999887 4799999999754
Q ss_pred hHHHHH--HHhhCCCCcEEEEecCCCCHH-HHHHHHHHHHhCCCe
Q 007482 85 AAASSM--AALKQPTIRVVAIIAEGVPEA-DTKQLIAYARSNNKV 126 (602)
Q Consensus 85 ~~~~~~--e~~~~~gv~~~viis~Gf~E~-~~~~l~~~a~~~g~r 126 (602)
.....+ +.....+ +.+++|-.+=++. +++.|.+..++..++
T Consensus 216 ~T~~li~~~~l~~mk-~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 259 (409)
T PRK11790 216 STKNMIGAEELALMK-PGAILINASRGTVVDIDALADALKSGHLA 259 (409)
T ss_pred HHhhccCHHHHhcCC-CCeEEEECCCCcccCHHHHHHHHHcCCce
Confidence 332222 1222222 2455555444443 888898888876654
No 201
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=75.25 E-value=12 Score=40.83 Aligned_cols=102 Identities=11% Similarity=0.026 Sum_probs=62.6
Q ss_pred CCCCCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCCh
Q 007482 6 LFSKTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFR 83 (602)
Q Consensus 6 l~~p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~ 83 (602)
-+.-+++.||| |..|+ +.+.+..+|++++ +.+ |+... ..+...|.+++++.. +.|++++.+|-.
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~G~~V~-~~D-p~~~~---------~~~~~~~~~l~ell~---~aDiV~lh~Plt 178 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGLGWKVL-VCD-PPRQE---------AEGDGDFVSLERILE---ECDVISLHTPLT 178 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHCCCEEE-EEC-Ccccc---------cccCccccCHHHHHh---hCCEEEEeCcCC
Confidence 34567899996 44455 7777778999864 444 53321 112234678999876 479999999963
Q ss_pred h-----hH----HHHHHHhhCCCCcEEEEecCCCCHH-HHHHHHHHHHhCCC
Q 007482 84 S-----AA----ASSMAALKQPTIRVVAIIAEGVPEA-DTKQLIAYARSNNK 125 (602)
Q Consensus 84 ~-----~~----~~~~e~~~~~gv~~~viis~Gf~E~-~~~~l~~~a~~~g~ 125 (602)
. +. ...++.+. +.+++|-.+=++. +++.|.+..++..+
T Consensus 179 ~~g~~~T~~li~~~~l~~mk----~gailIN~aRG~vVde~AL~~aL~~g~i 226 (381)
T PRK00257 179 KEGEHPTRHLLDEAFLASLR----PGAWLINASRGAVVDNQALREALLSGED 226 (381)
T ss_pred CCccccccccCCHHHHhcCC----CCeEEEECCCCcccCHHHHHHHHHhCCC
Confidence 2 11 23444443 2345555554444 78888887776543
No 202
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=74.63 E-value=5.2 Score=37.59 Aligned_cols=51 Identities=29% Similarity=0.373 Sum_probs=37.7
Q ss_pred HHHHHHHhhcCCCccEEEEEEecCC-Cc---HHHHHHHHHhcCCCCCEEEEEeCcCcc
Q 007482 204 LSDHILRFNNIPQVKMMVVLGELGG-RD---EYSLVEALKQGKVNKPVVAWVSGTCAR 257 (602)
Q Consensus 204 ~~d~l~~l~~Dp~t~~I~ly~E~g~-~~---~~~f~~~~r~~~~~KPVv~~k~Gr~~~ 257 (602)
+.+.|+.+.+|++++.|++++. +. .+ ...+.+++++. +||||++.-|....
T Consensus 16 l~~~l~~a~~d~~~~~ivl~~~-s~Gg~~~~~~~i~~~l~~~--~kpvva~~~g~~~s 70 (161)
T cd00394 16 LAAQIRFAEADNSVKAIVLEVN-TPGGRVDAGMNIVDALQAS--RKPVIAYVGGQAAS 70 (161)
T ss_pred HHHHHHHHHhCCCCceEEEEEE-CCCcCHHHHHHHHHHHHHh--CCCEEEEECChhHH
Confidence 5677788899999999999998 43 22 34566666654 49999998876543
No 203
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=74.39 E-value=19 Score=40.57 Aligned_cols=86 Identities=14% Similarity=0.102 Sum_probs=51.9
Q ss_pred CcEEEEeeCCcH---HHHHHHh---cCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhh--cCCCccEEEEecC
Q 007482 10 TTQALFYNYKQL---PIQRMLD---FDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACA--AHPMADVFINFSS 81 (602)
Q Consensus 10 ~s~avv~g~~~~---~~~~~~~---~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~--~~p~vDlavi~vp 81 (602)
+.++|| |.++. ..+.+.. .||++|+-++ ..... .++.|+|++.+.+++.. ....+|. +|++|
T Consensus 147 rrvLII-GaG~~a~~l~~~L~~~~~~g~~vVGfID-d~~~~-------~~i~gvPVlg~~d~l~~~~~~~~v~v-IIAip 216 (476)
T PRK15204 147 KKTIIL-GSGQNARGAYSALQSEEMMGFDVIAFFD-TDASD-------AEINMLPVIKDTEIIWDLNRTGDVHY-ILAYE 216 (476)
T ss_pred CeEEEE-ECCHHHHHHHHHHHhCccCCcEEEEEEc-CCccc-------cccCCCcccCCHHHHHHHHHhCCCcE-EEEeC
Confidence 445666 54443 4455544 3888775554 32211 35788999988765421 1123675 78888
Q ss_pred Chh--hHHHHHHHhhCCCCcEEEEec
Q 007482 82 FRS--AAASSMAALKQPTIRVVAIIA 105 (602)
Q Consensus 82 ~~~--~~~~~~e~~~~~gv~~~viis 105 (602)
... ....+++.|.+.|++.+.++.
T Consensus 217 ~~~~~~r~~il~~l~~~gv~~V~vIP 242 (476)
T PRK15204 217 YTELEKTHFWLRELSKHHCRSVTVVP 242 (476)
T ss_pred cCcHHHHHHHHHHHhhcCCeEEEEeC
Confidence 432 345778888877887666665
No 204
>PLN02591 tryptophan synthase
Probab=74.22 E-value=39 Score=34.70 Aligned_cols=41 Identities=22% Similarity=0.260 Sum_probs=33.5
Q ss_pred hHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCee
Q 007482 85 AAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVV 127 (602)
Q Consensus 85 ~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~ri 127 (602)
-++..+++|.+.|+.+++|. ..+-+..+++.+.++++|+..
T Consensus 94 G~~~F~~~~~~aGv~Gviip--DLP~ee~~~~~~~~~~~gl~~ 134 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVVP--DLPLEETEALRAEAAKNGIEL 134 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeC--CCCHHHHHHHHHHHHHcCCeE
Confidence 45778999999999998885 566667788999999999753
No 205
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=74.07 E-value=8.7 Score=38.11 Aligned_cols=117 Identities=15% Similarity=0.142 Sum_probs=60.3
Q ss_pred EEEEeeCCcH----HHHHHHhcCCeEEEEEeCCCCCCccc--cccCceeecccccCCHHHHhhcCCCccEEEEecCC---
Q 007482 12 QALFYNYKQL----PIQRMLDFDFLCVAGIINPGAEGFQK--LFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSF--- 82 (602)
Q Consensus 12 ~avv~g~~~~----~~~~~~~~g~~~V~gv~~p~~~~~~~--~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~--- 82 (602)
|+|+ |++|+ +++.|+..++.+...+. +......+ .-.|-++.- --|.+.+.+....-.+|.++++++.
T Consensus 1 I~V~-GatG~~G~~v~~~L~~~~~~V~~l~R-~~~~~~~~~l~~~g~~vv~-~d~~~~~~l~~al~g~d~v~~~~~~~~~ 77 (233)
T PF05368_consen 1 ILVT-GATGNQGRSVVRALLSAGFSVRALVR-DPSSDRAQQLQALGAEVVE-ADYDDPESLVAALKGVDAVFSVTPPSHP 77 (233)
T ss_dssp EEEE-TTTSHHHHHHHHHHHHTTGCEEEEES-SSHHHHHHHHHHTTTEEEE-S-TT-HHHHHHHHTTCSEEEEESSCSCC
T ss_pred CEEE-CCccHHHHHHHHHHHhCCCCcEEEEe-ccchhhhhhhhcccceEee-cccCCHHHHHHHHcCCceEEeecCcchh
Confidence 4566 44444 88888888888754444 32110001 113444442 2244444433221147888888872
Q ss_pred hh--hHHHHHHHhhCCCCcEEEEecCC--C-------CHH----HHHHHHHHHHhCCCe--eEcCC
Q 007482 83 RS--AAASSMAALKQPTIRVVAIIAEG--V-------PEA----DTKQLIAYARSNNKV--VIGPA 131 (602)
Q Consensus 83 ~~--~~~~~~e~~~~~gv~~~viis~G--f-------~E~----~~~~l~~~a~~~g~r--iiGPN 131 (602)
.. ....++++|.++|||.+|.-+-| . ++. ...++.+..++.++. ++-|+
T Consensus 78 ~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~~~~~~~p~~~~~~~k~~ie~~l~~~~i~~t~i~~g 143 (233)
T PF05368_consen 78 SELEQQKNLIDAAKAAGVKHFVPSSFGADYDESSGSEPEIPHFDQKAEIEEYLRESGIPYTIIRPG 143 (233)
T ss_dssp CHHHHHHHHHHHHHHHT-SEEEESEESSGTTTTTTSTTHHHHHHHHHHHHHHHHHCTSEBEEEEE-
T ss_pred hhhhhhhhHHHhhhccccceEEEEEecccccccccccccchhhhhhhhhhhhhhhccccceecccc
Confidence 11 23467888888888888642212 1 111 234556667777764 55554
No 206
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=73.79 E-value=13 Score=38.89 Aligned_cols=111 Identities=13% Similarity=0.061 Sum_probs=57.6
Q ss_pred CcEEEEe-eCCcH-HHHHHHhcCCe-EEEEEeCCCCCCccccccCceeecc--cccCCHHHHhhcCCCccEEEEecCChh
Q 007482 10 TTQALFY-NYKQL-PIQRMLDFDFL-CVAGIINPGAEGFQKLFFGQEEIAI--PVHSTVEAACAAHPMADVFINFSSFRS 84 (602)
Q Consensus 10 ~s~avv~-g~~~~-~~~~~~~~g~~-~V~gv~~p~~~~~~~~~~g~~v~G~--~~y~sv~~i~~~~p~vDlavi~vp~~~ 84 (602)
++++||| |..|. ..+.+.+.|+. -|.+++ +.... .+.. .-.|. ....+..+..+ +.|++|+++|...
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~d-r~~~~-~~~a---~~~g~~~~~~~~~~~~~~---~aDvViiavp~~~ 78 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGAD-RSAET-RARA---RELGLGDRVTTSAAEAVK---GADLVILCVPVGA 78 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEE-CCHHH-HHHH---HhCCCCceecCCHHHHhc---CCCEEEECCCHHH
Confidence 4688887 33344 67777777752 244554 32211 0000 01222 23456666544 4799999999864
Q ss_pred hHHHHHHHhhC-CCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcC
Q 007482 85 AAASSMAALKQ-PTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGP 130 (602)
Q Consensus 85 ~~~~~~e~~~~-~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGP 130 (602)
...+++.+.. .+-+.+|+..++......+++.+.. ..+++++|-
T Consensus 79 -~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~-~~~~~~v~~ 123 (307)
T PRK07502 79 -SGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHL-PEGVHFIPG 123 (307)
T ss_pred -HHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhC-CCCCeEEeC
Confidence 5666666542 1223455555566544333333322 235666654
No 207
>PRK10949 protease 4; Provisional
Probab=73.10 E-value=7.6 Score=45.10 Aligned_cols=87 Identities=13% Similarity=0.001 Sum_probs=53.3
Q ss_pred CHHHHHHHhhcCCCccEEEEEEecCCC--c---HHHHHHHHHhcC-CCCCEEEEEeCcCccCccccccccc--------c
Q 007482 203 TLSDHILRFNNIPQVKMMVVLGELGGR--D---EYSLVEALKQGK-VNKPVVAWVSGTCARLFKSEVQFGH--------A 268 (602)
Q Consensus 203 ~~~d~l~~l~~Dp~t~~I~ly~E~g~~--~---~~~f~~~~r~~~-~~KPVv~~k~Gr~~~g~~~~aa~sH--------t 268 (602)
++.+.|+...+||+++.|+|.+. +.. . -++..+++++.+ .+||||++--.-++ + +---+|| +
T Consensus 99 div~~i~~Aa~D~rIkgivL~i~-s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~~~~~~s-~--~YyLASaAD~I~l~P~ 174 (618)
T PRK10949 99 DIVNTIRQAKDDRNITGIVLDLK-NFAGADQPSMQYIGKALREFRDSGKPVYAVGDSYSQ-G--QYYLASFANKIYLSPQ 174 (618)
T ss_pred HHHHHHHHHhcCCCceEEEEEeC-CCCCccHHHHHHHHHHHHHHHHhCCeEEEEecCccc-h--hhhhhhhCCEEEECCC
Confidence 45556666779999999999999 542 1 246677777766 68999998333222 2 2222333 3
Q ss_pred CCcCCCCcc-hHHHHHHHHHHcCCcc
Q 007482 269 GAKSGGEME-SAQAKNQALRDAGAVV 293 (602)
Q Consensus 269 galag~~~~-~a~~~~a~~~qaGvi~ 293 (602)
|++.-..-. .-.-|..+|++.||-.
T Consensus 175 G~v~~~G~~~~~~~~k~lLdKlGV~~ 200 (618)
T PRK10949 175 GVVDLHGFATNGLYYKSLLDKLKVST 200 (618)
T ss_pred ceEEEeeeecchhhHHHHHHHcCCeE
Confidence 332211100 1245789999999865
No 208
>PLN02688 pyrroline-5-carboxylate reductase
Probab=72.09 E-value=13 Score=37.91 Aligned_cols=93 Identities=10% Similarity=0.101 Sum_probs=55.7
Q ss_pred CcEEEEe-eCCc-HHHHHHHhcCC----eEEEEE-eCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCC
Q 007482 10 TTQALFY-NYKQ-LPIQRMLDFDF----LCVAGI-INPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSF 82 (602)
Q Consensus 10 ~s~avv~-g~~~-~~~~~~~~~g~----~~V~gv-~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~ 82 (602)
+++++|| |..| .+.++|++.|+ +++ .. + +... +.+.+ .-.|+....+..++.. +.|++++++++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~-v~~~-r~~~-~~~~~---~~~g~~~~~~~~e~~~---~aDvVil~v~~ 71 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRIS-TADD-SNPA-RRDVF---QSLGVKTAASNTEVVK---SSDVIILAVKP 71 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEE-EEeC-CCHH-HHHHH---HHcCCEEeCChHHHHh---cCCEEEEEECc
Confidence 4578886 3333 38888998887 432 33 2 3221 11111 1146777888888754 37999999987
Q ss_pred hhhHHHHHHHhhCC-C-CcEEEEecCCCCHHH
Q 007482 83 RSAAASSMAALKQP-T-IRVVAIIAEGVPEAD 112 (602)
Q Consensus 83 ~~~~~~~~e~~~~~-g-v~~~viis~Gf~E~~ 112 (602)
.. +.++++.+... . =+.+|-+++|.+...
T Consensus 72 ~~-~~~vl~~l~~~~~~~~~iIs~~~g~~~~~ 102 (266)
T PLN02688 72 QV-VKDVLTELRPLLSKDKLLVSVAAGITLAD 102 (266)
T ss_pred HH-HHHHHHHHHhhcCCCCEEEEecCCCcHHH
Confidence 64 78887776421 1 133454567886543
No 209
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=72.04 E-value=4.5 Score=34.33 Aligned_cols=75 Identities=12% Similarity=0.058 Sum_probs=43.6
Q ss_pred cEEEEe-e-CCcHHHHHHHhcC---CeEEEEEeCCCCCCccccccCceeecccccC-CHHHHhhcCCCccEEEEecCChh
Q 007482 11 TQALFY-N-YKQLPIQRMLDFD---FLCVAGIINPGAEGFQKLFFGQEEIAIPVHS-TVEAACAAHPMADVFINFSSFRS 84 (602)
Q Consensus 11 s~avv~-g-~~~~~~~~~~~~g---~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~-sv~~i~~~~p~vDlavi~vp~~~ 84 (602)
+++++| | ++..+++.|++.| .++.-..+ +... +...+ .+..+..++. +..|+.++ .|+++++||+..
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~-r~~~-~~~~~--~~~~~~~~~~~~~~~~~~~---advvilav~p~~ 73 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSS-RSPE-KAAEL--AKEYGVQATADDNEEAAQE---ADVVILAVKPQQ 73 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEE-SSHH-HHHHH--HHHCTTEEESEEHHHHHHH---TSEEEE-S-GGG
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeecc-CcHH-HHHHH--HHhhccccccCChHHhhcc---CCEEEEEECHHH
Confidence 367774 2 2223888999998 66532222 3211 01111 1234455566 78887763 699999999975
Q ss_pred hHHHHHHHh
Q 007482 85 AAASSMAAL 93 (602)
Q Consensus 85 ~~~~~~e~~ 93 (602)
.+++++++
T Consensus 74 -~~~v~~~i 81 (96)
T PF03807_consen 74 -LPEVLSEI 81 (96)
T ss_dssp -HHHHHHHH
T ss_pred -HHHHHHHH
Confidence 78888887
No 210
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=71.95 E-value=11 Score=38.94 Aligned_cols=96 Identities=9% Similarity=-0.020 Sum_probs=54.9
Q ss_pred cEEEEe-eCCcH-HHHHHHhcC----CeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChh
Q 007482 11 TQALFY-NYKQL-PIQRMLDFD----FLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRS 84 (602)
Q Consensus 11 s~avv~-g~~~~-~~~~~~~~g----~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~ 84 (602)
++++|| |.-|. +.+.+.+.| .++ ..++ +....+.+.+. .+..+.....+..++.. +.|++|+++|+..
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V-~~~~-r~~~~~~~~l~-~~~~~~~~~~~~~e~~~---~aDvVilavpp~~ 76 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEI-ILYS-SSKNEHFNQLY-DKYPTVELADNEAEIFT---KCDHSFICVPPLA 76 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccE-EEEe-CCcHHHHHHHH-HHcCCeEEeCCHHHHHh---hCCEEEEecCHHH
Confidence 588886 44444 667777766 343 2343 32111111110 01113445567777654 4799999999865
Q ss_pred hHHHHHHHhhC--CCCcEEEEecCCCCHHHH
Q 007482 85 AAASSMAALKQ--PTIRVVAIIAEGVPEADT 113 (602)
Q Consensus 85 ~~~~~~e~~~~--~gv~~~viis~Gf~E~~~ 113 (602)
+.++++++.. +.=+.+|.++.|+...+.
T Consensus 77 -~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l 106 (277)
T PRK06928 77 -VLPLLKDCAPVLTPDRHVVSIAAGVSLDDL 106 (277)
T ss_pred -HHHHHHHHHhhcCCCCEEEEECCCCCHHHH
Confidence 7778887742 112357778899986543
No 211
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=71.91 E-value=17 Score=39.48 Aligned_cols=62 Identities=11% Similarity=0.056 Sum_probs=38.3
Q ss_pred CccEEEEecCChhhHHHHHHHhhCCCCcEEEEec-CCCCHH----------HHHHHHHHHHhCCCe-eEcCCcccc
Q 007482 72 MADVFINFSSFRSAAASSMAALKQPTIRVVAIIA-EGVPEA----------DTKQLIAYARSNNKV-VIGPATVGG 135 (602)
Q Consensus 72 ~vDlavi~vp~~~~~~~~~e~~~~~gv~~~viis-~Gf~E~----------~~~~l~~~a~~~g~r-iiGPNc~G~ 135 (602)
++|+++.+.+.. ........+.++|.+++||=. +-|... --+.|.. .+++|+. +.+|||.=+
T Consensus 64 ~vDivffa~g~~-~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~-~~~~gi~~ianPNCst~ 137 (366)
T TIGR01745 64 ALDIIITCQGGD-YTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITD-GLNNGIRTFVGGNCTVS 137 (366)
T ss_pred CCCEEEEcCCHH-HHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHh-HHhCCcCeEECcCHHHH
Confidence 589999988876 355566667678876555544 344322 1223333 2357876 889999543
No 212
>PRK08507 prephenate dehydrogenase; Validated
Probab=71.83 E-value=22 Score=36.55 Aligned_cols=75 Identities=11% Similarity=-0.041 Sum_probs=43.4
Q ss_pred cEEEEe-eCCc-HHHHHHHhcCCe-EEEEEeCCCCCCccccccCceeeccc-ccCCHHHHhhcCCCccEEEEecCChhhH
Q 007482 11 TQALFY-NYKQ-LPIQRMLDFDFL-CVAGIINPGAEGFQKLFFGQEEIAIP-VHSTVEAACAAHPMADVFINFSSFRSAA 86 (602)
Q Consensus 11 s~avv~-g~~~-~~~~~~~~~g~~-~V~gv~~p~~~~~~~~~~g~~v~G~~-~y~sv~~i~~~~p~vDlavi~vp~~~~~ 86 (602)
+++||| |..| .+.+.|.+.|+. -|.+++ +.... .+.. .-.|.. .+.+..++. +.|++|++||... .
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d-~~~~~-~~~~---~~~g~~~~~~~~~~~~----~aD~Vilavp~~~-~ 71 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYD-HNELH-LKKA---LELGLVDEIVSFEELK----KCDVIFLAIPVDA-I 71 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEc-CCHHH-HHHH---HHCCCCcccCCHHHHh----cCCEEEEeCcHHH-H
Confidence 588886 3333 377888888863 245555 32211 0000 112332 344666653 3699999999975 6
Q ss_pred HHHHHHhhC
Q 007482 87 ASSMAALKQ 95 (602)
Q Consensus 87 ~~~~e~~~~ 95 (602)
..+++++..
T Consensus 72 ~~~~~~l~~ 80 (275)
T PRK08507 72 IEILPKLLD 80 (275)
T ss_pred HHHHHHHhc
Confidence 667777753
No 213
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=71.71 E-value=14 Score=39.56 Aligned_cols=96 Identities=11% Similarity=0.000 Sum_probs=50.5
Q ss_pred CcEEEEe--eCCcH-HHHHHHhc-CCeEEEEEeCCCCCCccccccCceeecc--cccCCHHHHhhcCCCccEEEEecCCh
Q 007482 10 TTQALFY--NYKQL-PIQRMLDF-DFLCVAGIINPGAEGFQKLFFGQEEIAI--PVHSTVEAACAAHPMADVFINFSSFR 83 (602)
Q Consensus 10 ~s~avv~--g~~~~-~~~~~~~~-g~~~V~gv~~p~~~~~~~~~~g~~v~G~--~~y~sv~~i~~~~p~vDlavi~vp~~ 83 (602)
.+++|+| |..|+ +++.+.+. +++++.-......+......++ .+.+. ..|.++.+. ... ++|++++++|..
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~-~~~~~~~~~~~~~~~~-~~~-~vD~Vf~alP~~ 79 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHP-HLRGLVDLVLEPLDPE-ILA-GADVVFLALPHG 79 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCc-ccccccCceeecCCHH-Hhc-CCCEEEECCCcH
Confidence 4688886 34444 66666664 5666544441122111111111 01111 134444432 112 589999999997
Q ss_pred hhHHHHHHHhhCCCCcEEEEecCCCCH
Q 007482 84 SAAASSMAALKQPTIRVVAIIAEGVPE 110 (602)
Q Consensus 84 ~~~~~~~e~~~~~gv~~~viis~Gf~E 110 (602)
. ......++.++|+ .+|=.|+.|.-
T Consensus 80 ~-~~~~v~~a~~aG~-~VID~S~~fR~ 104 (343)
T PRK00436 80 V-SMDLAPQLLEAGV-KVIDLSADFRL 104 (343)
T ss_pred H-HHHHHHHHHhCCC-EEEECCcccCC
Confidence 5 5566666765675 36666777754
No 214
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=71.37 E-value=12 Score=41.05 Aligned_cols=111 Identities=18% Similarity=0.099 Sum_probs=57.1
Q ss_pred CcEEEEe-eCCcHHHHHHHhcCCeEEEEEeC-CCCCC--c--cccccCcee------ecccccCC--HHHHhhcCCCccE
Q 007482 10 TTQALFY-NYKQLPIQRMLDFDFLCVAGIIN-PGAEG--F--QKLFFGQEE------IAIPVHST--VEAACAAHPMADV 75 (602)
Q Consensus 10 ~s~avv~-g~~~~~~~~~~~~g~~~V~gv~~-p~~~~--~--~~~~~g~~v------~G~~~y~s--v~~i~~~~p~vDl 75 (602)
++|+||| |..|..+-.++..|++++ +++- +.+-. + ...+....+ .+.....| .+++.. +.|+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~G~~Vi-gvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~---~ad~ 76 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQNHEVV-ALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYR---DADY 76 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCcEE-EEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhc---CCCE
Confidence 3588887 566765557777788864 5541 21100 0 000000000 12222223 444433 4899
Q ss_pred EEEecCCh----------hhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCC
Q 007482 76 FINFSSFR----------SAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNN 124 (602)
Q Consensus 76 avi~vp~~----------~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g 124 (602)
++++||.+ ..+.++.+.+.+..-..+||+.|=++....+++.+..++.+
T Consensus 77 vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~ 135 (388)
T PRK15057 77 VIIATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTEN 135 (388)
T ss_pred EEEeCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCc
Confidence 99999965 33455555555433345666666555555556666555544
No 215
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=71.15 E-value=25 Score=36.88 Aligned_cols=98 Identities=12% Similarity=0.083 Sum_probs=61.8
Q ss_pred CcEEEEeeCCcH--HHHHHHhcCCeE-EEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChh--
Q 007482 10 TTQALFYNYKQL--PIQRMLDFDFLC-VAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRS-- 84 (602)
Q Consensus 10 ~s~avv~g~~~~--~~~~~~~~g~~~-V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~-- 84 (602)
.+++|+||=.-. .+++|.+.|+++ ++| ||... .+..|..++.+.+++.. +.|+++..+|...
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g--~~~~~--------~~~~g~~~~~~~~~~~~---~ad~ii~~~p~~~~~ 69 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVELGAKVSLVG--FDQLD--------HGFTGATKSSSLEEALS---DVDVIILPVPGTNDE 69 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHCCCEEEEEe--ccccc--------cccCCceeeccHHHHhc---cCCEEEECCccccCC
Confidence 467888763222 888999999997 434 45332 13568899999888765 4799998877620
Q ss_pred ----h---------HHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeE
Q 007482 85 ----A---------AASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVI 128 (602)
Q Consensus 85 ----~---------~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~rii 128 (602)
. -.+.++.+. +| .+++ .+-+.+. +.+.++++|++++
T Consensus 70 ~~i~~~~~~~~~~~~~~~l~~l~-~~--~~v~-~G~~~~~----~~~~~~~~gi~~~ 118 (296)
T PRK08306 70 GNVDTVFSNEKLVLTEELLELTP-EH--CTIF-SGIANPY----LKELAKETNRKLV 118 (296)
T ss_pred ceeeccccccCCcchHHHHHhcC-CC--CEEE-EecCCHH----HHHHHHHCCCeEE
Confidence 1 134566666 55 2233 3333332 3356779999986
No 216
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=70.33 E-value=27 Score=38.75 Aligned_cols=85 Identities=12% Similarity=0.084 Sum_probs=52.1
Q ss_pred CcEEEEeeCCcH---HHHHHHh---cCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhh---cCCCccEEEEec
Q 007482 10 TTQALFYNYKQL---PIQRMLD---FDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACA---AHPMADVFINFS 80 (602)
Q Consensus 10 ~s~avv~g~~~~---~~~~~~~---~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~---~~p~vDlavi~v 80 (602)
+.+.|+ |.+.. ..+.|.+ .||++|+-++ ..... .|.. .|+|++.+++|+.+ +. ++|.+++++
T Consensus 129 ~rvLIi-Gag~~~~~l~~~L~~~~~~g~~vvG~id-d~~~~-----~~~~-~gvpVlg~~~dl~~~i~~~-~vd~ViIA~ 199 (451)
T TIGR03023 129 RRVLIV-GAGELGRRLAERLARNPELGYRVVGFFD-DRPDA-----RTGV-RGVPVLGKLDDLEELIREG-EVDEVYIAL 199 (451)
T ss_pred CcEEEE-eCCHHHHHHHHHHHhCccCCcEEEEEEe-CCCcc-----cccc-CCCCccCCHHHHHHHHHhc-CCCEEEEee
Confidence 456666 44333 5555554 5788776554 31110 1233 78999988777643 34 589999998
Q ss_pred CChh--hHHHHHHHhhCCCCcEEEE
Q 007482 81 SFRS--AAASSMAALKQPTIRVVAI 103 (602)
Q Consensus 81 p~~~--~~~~~~e~~~~~gv~~~vi 103 (602)
|... ....+++.|.+.|++..++
T Consensus 200 p~~~~~~~~~ll~~~~~~gv~V~vv 224 (451)
T TIGR03023 200 PLAAEDRILELLDALEDLTVDVRLV 224 (451)
T ss_pred CcccHHHHHHHHHHHHhcCCEEEEe
Confidence 8743 2456778888777774443
No 217
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=69.92 E-value=21 Score=38.95 Aligned_cols=101 Identities=11% Similarity=0.059 Sum_probs=64.0
Q ss_pred CCCCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChh
Q 007482 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRS 84 (602)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~ 84 (602)
+.-+++.||| |..|+ +.+.+..+|.+++ +.+ |++.. +-.. ..|.+++++.. +.|++++.+|-..
T Consensus 114 L~gktvGIIG~G~IG~~vA~~l~a~G~~V~-~~d-p~~~~--------~~~~-~~~~~L~ell~---~sDiI~lh~PLt~ 179 (378)
T PRK15438 114 LHDRTVGIVGVGNVGRRLQARLEALGIKTL-LCD-PPRAD--------RGDE-GDFRSLDELVQ---EADILTFHTPLFK 179 (378)
T ss_pred cCCCEEEEECcCHHHHHHHHHHHHCCCEEE-EEC-Ccccc--------cccc-cccCCHHHHHh---hCCEEEEeCCCCC
Confidence 5667899996 44455 6777778999865 455 64321 0011 24779999886 3699999998532
Q ss_pred -----hH----HHHHHHhhCCCCcEEEEecCCCCHH-HHHHHHHHHHhCCC
Q 007482 85 -----AA----ASSMAALKQPTIRVVAIIAEGVPEA-DTKQLIAYARSNNK 125 (602)
Q Consensus 85 -----~~----~~~~e~~~~~gv~~~viis~Gf~E~-~~~~l~~~a~~~g~ 125 (602)
+. ...++.+. +.+++|-.+=++. +++.|++..++..+
T Consensus 180 ~g~~~T~~li~~~~l~~mk----~gailIN~aRG~vVDe~AL~~aL~~g~~ 226 (378)
T PRK15438 180 DGPYKTLHLADEKLIRSLK----PGAILINACRGAVVDNTALLTCLNEGQK 226 (378)
T ss_pred CcccccccccCHHHHhcCC----CCcEEEECCCchhcCHHHHHHHHHhCCC
Confidence 11 23344443 3566666666655 88888888877544
No 218
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=69.81 E-value=6.7 Score=40.72 Aligned_cols=111 Identities=13% Similarity=0.079 Sum_probs=66.3
Q ss_pred CCCCcEEEEeeCCcHHHH--HHHh-cCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCCh
Q 007482 7 FSKTTQALFYNYKQLPIQ--RMLD-FDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFR 83 (602)
Q Consensus 7 ~~p~s~avv~g~~~~~~~--~~~~-~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~ 83 (602)
-+|+||+|+|..-|.+-- -+.. -+|+++ |.. ..+..+-..+ .+-.|+|.|.+++++++ +||+|-|.|-..
T Consensus 2 ~~pksVvV~GtrFGq~Ylaaf~~~~~~~eLa-GiL-aqGSeRSRaL--Ah~~GVply~~~eelpd---~idiACVvVrsa 74 (361)
T COG4693 2 SDPKSVVVCGTRFGQFYLAAFAAAPPRFELA-GIL-AQGSERSRAL--AHRLGVPLYCEVEELPD---DIDIACVVVRSA 74 (361)
T ss_pred CCCceEEEecchHHHHHHHHhccCCCCceee-hhh-hcccHHHHHH--HHHhCCccccCHhhCCC---CCCeEEEEEeee
Confidence 468988888654454211 1222 355543 432 2111110011 23589999999999865 589998877543
Q ss_pred hh---HHHHHHHhhCCCCcEEEEecCC-CCHHHHHHHHHHHHhCCCee
Q 007482 84 SA---AASSMAALKQPTIRVVAIIAEG-VPEADTKQLIAYARSNNKVV 127 (602)
Q Consensus 84 ~~---~~~~~e~~~~~gv~~~viis~G-f~E~~~~~l~~~a~~~g~ri 127 (602)
-+ -.++-++.-++||. ++-++ .-.++.+++++.|++.|.|-
T Consensus 75 i~Gg~Gs~larall~RGi~---VlqEHPl~p~di~~l~rlA~rqG~~y 119 (361)
T COG4693 75 IVGGQGSALARALLARGIH---VLQEHPLHPRDIQDLLRLAERQGRRY 119 (361)
T ss_pred eecCCcHHHHHHHHHcccH---HHHhCCCCHHHHHHHHHHHHHhCcEE
Confidence 11 14566777777776 33333 22348899999999999873
No 219
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=69.45 E-value=30 Score=37.62 Aligned_cols=84 Identities=11% Similarity=0.025 Sum_probs=49.8
Q ss_pred CcEEEEe--e-CCcHHHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhH
Q 007482 10 TTQALFY--N-YKQLPIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAA 86 (602)
Q Consensus 10 ~s~avv~--g-~~~~~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~ 86 (602)
++++||| | +++.+.+.+...|+.+ .+++ . . . +.+.+++.. +.|++|+++|... .
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~~V-~~~d-~-~----------~------~~~~~~~~~---~aDlVilavP~~~-~ 155 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGYQV-RILE-Q-D----------D------WDRAEDILA---DAGMVIVSVPIHL-T 155 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCCeE-EEeC-C-C----------c------chhHHHHHh---cCCEEEEeCcHHH-H
Confidence 6899998 4 3344788888888874 2333 1 1 0 134556544 4799999999975 6
Q ss_pred HHHHHHhhCCCCcEEEEecCCCCHHHHHHH
Q 007482 87 ASSMAALKQPTIRVVAIIAEGVPEADTKQL 116 (602)
Q Consensus 87 ~~~~e~~~~~gv~~~viis~Gf~E~~~~~l 116 (602)
..+++......-..+|+=.+..+....+++
T Consensus 156 ~~~~~~l~~l~~~~iv~Dv~SvK~~~~~~~ 185 (374)
T PRK11199 156 EEVIARLPPLPEDCILVDLTSVKNAPLQAM 185 (374)
T ss_pred HHHHHHHhCCCCCcEEEECCCccHHHHHHH
Confidence 777777764222333333444544333333
No 220
>PRK10949 protease 4; Provisional
Probab=69.25 E-value=8.2 Score=44.84 Aligned_cols=82 Identities=24% Similarity=0.333 Sum_probs=55.9
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCc----HHHHH
Q 007482 160 RPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRD----EYSLV 235 (602)
Q Consensus 160 ~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~----~~~f~ 235 (602)
..+.||+|.-+|.+... +..-| .+| .-++.+.|+-..+||++|+|+|.+. +..- .+...
T Consensus 324 ~~~~Iavi~~~G~I~~g------~~~~g-----~~~-----~~~~~~~l~~a~~D~~vkaVvLrIn-SpGGs~~ase~i~ 386 (618)
T PRK10949 324 TGGSIAVIFANGAIMDG------EETPG-----NVG-----GDTTAAQIRDARLDPKVKAIVLRVN-SPGGSVTASEVIR 386 (618)
T ss_pred CCCeEEEEEEEEEEcCC------CCcCC-----CcC-----HHHHHHHHHHHHhCCCCcEEEEEec-CCCCcHHHHHHHH
Confidence 35789999999987432 00111 112 2347888999999999999999999 4332 24566
Q ss_pred HHHHhcC-CCCCEEEEEeCcCccC
Q 007482 236 EALKQGK-VNKPVVAWVSGTCARL 258 (602)
Q Consensus 236 ~~~r~~~-~~KPVv~~k~Gr~~~g 258 (602)
+++++++ .+||||+.-.+-..+|
T Consensus 387 ~~i~~~r~~gKPVvas~~~~aASg 410 (618)
T PRK10949 387 AELAAARAAGKPVVVSMGGMAASG 410 (618)
T ss_pred HHHHHHHhcCCcEEEEECCCCccH
Confidence 6676665 6799999876654443
No 221
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=69.21 E-value=16 Score=37.88 Aligned_cols=93 Identities=9% Similarity=-0.094 Sum_probs=49.8
Q ss_pred CcEEEEe-e-CCcHHHHHHHhcCCeEEEEEeCCCCCCccccccCceeec-ccccCCHHHHhhcCCCccEEEEecCChhhH
Q 007482 10 TTQALFY-N-YKQLPIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIA-IPVHSTVEAACAAHPMADVFINFSSFRSAA 86 (602)
Q Consensus 10 ~s~avv~-g-~~~~~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G-~~~y~sv~~i~~~~p~vDlavi~vp~~~~~ 86 (602)
++|+||| | +++.....+.+.|+++ .+++ +.... .+.. .+ .| +....+..+... +.|++|+++|... .
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V-~~~d-~~~~~-~~~a--~~-~g~~~~~~~~~~~~~---~aDlVilavp~~~-~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTV-YGVS-RREST-CERA--IE-RGLVDEASTDLSLLK---DCDLVILALPIGL-L 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEE-EEEE-CCHHH-HHHH--HH-CCCcccccCCHhHhc---CCCEEEEcCCHHH-H
Confidence 3688887 4 3344778888888874 3554 32210 0000 00 12 222322223333 4799999999875 5
Q ss_pred HHHHHHhhCC-CCcEEEEecCCCCHHH
Q 007482 87 ASSMAALKQP-TIRVVAIIAEGVPEAD 112 (602)
Q Consensus 87 ~~~~e~~~~~-gv~~~viis~Gf~E~~ 112 (602)
..+++++... .-+.+|.-+++++...
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~ 97 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPI 97 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHH
Confidence 6667766532 2234555556666543
No 222
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=69.04 E-value=13 Score=42.46 Aligned_cols=106 Identities=14% Similarity=0.121 Sum_probs=62.0
Q ss_pred CCCCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChh
Q 007482 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRS 84 (602)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~ 84 (602)
+.-+++.||| |..|+ +.+.+..+|++++ +.+ |...... ..-.|.+.. ++.|+.+ +.|++++++|...
T Consensus 138 l~gktvgIiG~G~IG~~vA~~l~~fG~~V~-~~d-~~~~~~~-----~~~~g~~~~-~l~ell~---~aDiV~l~lP~t~ 206 (526)
T PRK13581 138 LYGKTLGIIGLGRIGSEVAKRAKAFGMKVI-AYD-PYISPER-----AAQLGVELV-SLDELLA---RADFITLHTPLTP 206 (526)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEC-CCCChhH-----HHhcCCEEE-cHHHHHh---hCCEEEEccCCCh
Confidence 4557888886 44455 7778888999864 554 4211100 112345444 8999876 4799999999854
Q ss_pred hHHH-----HHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCe
Q 007482 85 AAAS-----SMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV 126 (602)
Q Consensus 85 ~~~~-----~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~r 126 (602)
.... .++.+. . ..++|-++-=+-.+++.|.+..++..++
T Consensus 207 ~t~~li~~~~l~~mk-~--ga~lIN~aRG~~vde~aL~~aL~~g~i~ 250 (526)
T PRK13581 207 ETRGLIGAEELAKMK-P--GVRIINCARGGIIDEAALAEALKSGKVA 250 (526)
T ss_pred HhhcCcCHHHHhcCC-C--CeEEEECCCCceeCHHHHHHHHhcCCee
Confidence 3333 334343 2 2334333322223788888888776554
No 223
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=68.74 E-value=6.2 Score=37.18 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=42.2
Q ss_pred cccccCCHHHHhhcCCCccEEEEecCChhhHHHHHHHhhC--CCCcEEEEecCCCCHH----HHHHHHHHHHhCCC-eeE
Q 007482 56 AIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQ--PTIRVVAIIAEGVPEA----DTKQLIAYARSNNK-VVI 128 (602)
Q Consensus 56 G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~~e~~~~--~gv~~~viis~Gf~E~----~~~~l~~~a~~~g~-rii 128 (602)
.+.+..+++++.+ +.|+.+++||... ...+++.+.. +.-+.+++++-||-.. ..+-+.+......+ -+.
T Consensus 56 ~i~~t~dl~~a~~---~ad~IiiavPs~~-~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~ls 131 (157)
T PF01210_consen 56 NIKATTDLEEALE---DADIIIIAVPSQA-HREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLS 131 (157)
T ss_dssp TEEEESSHHHHHT---T-SEEEE-S-GGG-HHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEE
T ss_pred ccccccCHHHHhC---cccEEEecccHHH-HHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEee
Confidence 4567888988776 4799999999875 8899999885 1234566667799222 23333333333323 377
Q ss_pred cCCc
Q 007482 129 GPAT 132 (602)
Q Consensus 129 GPNc 132 (602)
|||-
T Consensus 132 GP~~ 135 (157)
T PF01210_consen 132 GPSF 135 (157)
T ss_dssp SS--
T ss_pred CccH
Confidence 7764
No 224
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=67.75 E-value=1.1e+02 Score=31.44 Aligned_cols=68 Identities=15% Similarity=0.158 Sum_probs=44.7
Q ss_pred ccCCHHHHhhcCCCccEEEEe-cCC--hhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeE
Q 007482 59 VHSTVEAACAAHPMADVFINF-SSF--RSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVI 128 (602)
Q Consensus 59 ~y~sv~~i~~~~p~vDlavi~-vp~--~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~rii 128 (602)
++.-++++-+..+++.+++.. ..+ +.-++..++.|.+.|+.+++| -..+-+..+++++.++++|+..+
T Consensus 76 ~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGvii--pDLp~ee~~~~~~~~~~~gl~~I 146 (258)
T PRK13111 76 VFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLII--PDLPPEEAEELRAAAKKHGLDLI 146 (258)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEE--CCCCHHHHHHHHHHHHHcCCcEE
Confidence 455666654232234444322 111 224678899999999999988 36776677899999999997643
No 225
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=67.68 E-value=65 Score=32.83 Aligned_cols=69 Identities=14% Similarity=0.051 Sum_probs=38.9
Q ss_pred HHHHHhcCCceeEEeeccCC---CCCCCCHHHHHHHhhc--CCCccEEEEEEecCCCcHHHHHHHHHhcCCCCCEEE
Q 007482 178 YNTIARVTDGIYEGIAIGGD---VFPGSTLSDHILRFNN--IPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVA 249 (602)
Q Consensus 178 ~~~~~~~g~G~s~~vs~Gn~---~~~dv~~~d~l~~l~~--Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~~~KPVv~ 249 (602)
..+..+.|+-+..+.+.|-. .+..++..++.+...+ +|+..+|.+..= +++--+ .++.+.+ ..+|||+-
T Consensus 138 ~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCT-nLrt~~-vi~~lE~-~lGkPVls 211 (239)
T TIGR02990 138 AQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSCT-ALRAAT-CAQRIEQ-AIGKPVVT 211 (239)
T ss_pred HHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCC-CchhHH-HHHHHHH-HHCCCEEE
Confidence 34445555555555554442 1334555666665543 778888888766 555533 3333332 26999974
No 226
>PRK08818 prephenate dehydrogenase; Provisional
Probab=67.33 E-value=49 Score=36.05 Aligned_cols=83 Identities=13% Similarity=0.103 Sum_probs=48.8
Q ss_pred CCCcEEEEee---CCcHHHHHHHh-cCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCCh
Q 007482 8 SKTTQALFYN---YKQLPIQRMLD-FDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFR 83 (602)
Q Consensus 8 ~p~s~avv~g---~~~~~~~~~~~-~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~ 83 (602)
...++.|||+ +++...+.+.+ ++++ |.|+. +... ...+..+... +.|++|+|+|..
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~-V~g~D-~~d~---------------~~~~~~~~v~---~aDlVilavPv~ 62 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLE-VIGHD-PADP---------------GSLDPATLLQ---RADVLIFSAPIR 62 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCE-EEEEc-CCcc---------------ccCCHHHHhc---CCCEEEEeCCHH
Confidence 4568888874 34446666654 4666 44665 4211 1124455444 489999999997
Q ss_pred hhHHHHHHHhhCC----CCcEEEEecCCCCHH
Q 007482 84 SAAASSMAALKQP----TIRVVAIIAEGVPEA 111 (602)
Q Consensus 84 ~~~~~~~e~~~~~----gv~~~viis~Gf~E~ 111 (602)
. ...++++.... .-..+|.=.+..++.
T Consensus 63 ~-~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~ 93 (370)
T PRK08818 63 H-TAALIEEYVALAGGRAAGQLWLDVTSIKQA 93 (370)
T ss_pred H-HHHHHHHHhhhhcCCCCCeEEEECCCCcHH
Confidence 5 77788887642 223344334566653
No 227
>PRK06932 glycerate dehydrogenase; Provisional
Probab=67.06 E-value=15 Score=38.90 Aligned_cols=100 Identities=12% Similarity=0.049 Sum_probs=61.8
Q ss_pred CCCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhh
Q 007482 8 SKTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSA 85 (602)
Q Consensus 8 ~p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~ 85 (602)
.=+++.||| |.-|+ +.+.+..+|.+++ +.+ +... .+. .. -|.++.|+.+ +.|++++.+|....
T Consensus 146 ~gktvgIiG~G~IG~~va~~l~~fg~~V~-~~~-~~~~--------~~~-~~-~~~~l~ell~---~sDiv~l~~Plt~~ 210 (314)
T PRK06932 146 RGSTLGVFGKGCLGTEVGRLAQALGMKVL-YAE-HKGA--------SVC-RE-GYTPFEEVLK---QADIVTLHCPLTET 210 (314)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCCCEEE-EEC-CCcc--------ccc-cc-ccCCHHHHHH---hCCEEEEcCCCChH
Confidence 346788886 44466 6666666998864 444 3211 011 11 2678999887 47999999996543
Q ss_pred H-----HHHHHHhhCCCCcEEEEecCCCCHH-HHHHHHHHHHhCCCe
Q 007482 86 A-----ASSMAALKQPTIRVVAIIAEGVPEA-DTKQLIAYARSNNKV 126 (602)
Q Consensus 86 ~-----~~~~e~~~~~gv~~~viis~Gf~E~-~~~~l~~~a~~~g~r 126 (602)
. ...++.+. +.+++|-.+=++. +++.|.+..++..++
T Consensus 211 T~~li~~~~l~~mk----~ga~lIN~aRG~~Vde~AL~~aL~~g~i~ 253 (314)
T PRK06932 211 TQNLINAETLALMK----PTAFLINTGRGPLVDEQALLDALENGKIA 253 (314)
T ss_pred HhcccCHHHHHhCC----CCeEEEECCCccccCHHHHHHHHHcCCcc
Confidence 3 23444444 3455665555554 888898888876554
No 228
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=66.99 E-value=7.9 Score=41.27 Aligned_cols=125 Identities=14% Similarity=0.092 Sum_probs=74.3
Q ss_pred CCcEEEEe--eCCcH-HHHHHHhcCCeE-EEEEeCCCCCCccccccCceeeccccc-CC-HHHHhhcCCCccEEEEecCC
Q 007482 9 KTTQALFY--NYKQL-PIQRMLDFDFLC-VAGIINPGAEGFQKLFFGQEEIAIPVH-ST-VEAACAAHPMADVFINFSSF 82 (602)
Q Consensus 9 p~s~avv~--g~~~~-~~~~~~~~g~~~-V~gv~~p~~~~~~~~~~g~~v~G~~~y-~s-v~~i~~~~p~vDlavi~vp~ 82 (602)
|-.++|.| |+.|. +.+.+...|-+- ++|.+ +.+=+....-+|.+..-.|+. |+ ++++.. .+++++-||-+
T Consensus 6 e~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs-~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~~---~~~VVlncvGP 81 (382)
T COG3268 6 EYDIIIYGATGYAGGLVAEYLAREGLTAALAGRS-SAKLDALRASLGPEAAVFPLGVPAALEAMAS---RTQVVLNCVGP 81 (382)
T ss_pred ceeEEEEccccchhHHHHHHHHHcCCchhhccCC-HHHHHHHHHhcCccccccCCCCHHHHHHHHh---cceEEEecccc
Confidence 33566665 34455 778888877663 55555 322112222335555445555 33 333333 47999999977
Q ss_pred hhhH-HHHHHHhhCCCCcEEEEecCC--CCHHHHHHHHHHHHhCCCeeEcCCcccccc-cCc
Q 007482 83 RSAA-ASSMAALKQPTIRVVAIIAEG--VPEADTKQLIAYARSNNKVVIGPATVGGIQ-AGA 140 (602)
Q Consensus 83 ~~~~-~~~~e~~~~~gv~~~viis~G--f~E~~~~~l~~~a~~~g~riiGPNc~G~~~-~~~ 140 (602)
-... ..++++|...|...+=| |.- |-|..++.--+.|++.|+||+ ||-||=+ |.+
T Consensus 82 yt~~g~plv~aC~~~GTdY~Di-TGEi~~fe~~i~~yh~~A~~~Ga~Ii--~~cGFDsIPsD 140 (382)
T COG3268 82 YTRYGEPLVAACAAAGTDYADI-TGEIMFFENSIDLYHAQAADAGARII--PGCGFDSIPSD 140 (382)
T ss_pred ccccccHHHHHHHHhCCCeeec-cccHHHHHHHHHHHHHHHHhcCCEEe--ccCCCCcCccc
Confidence 4322 57899999999998776 421 222233333667999999998 6777743 444
No 229
>CHL00194 ycf39 Ycf39; Provisional
Probab=66.85 E-value=37 Score=35.44 Aligned_cols=93 Identities=15% Similarity=0.143 Sum_probs=49.9
Q ss_pred CcEEEEee--CCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceee--cccccCCHHHHhhcCCCccEEEEecCChh
Q 007482 10 TTQALFYN--YKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEI--AIPVHSTVEAACAAHPMADVFINFSSFRS 84 (602)
Q Consensus 10 ~s~avv~g--~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~--G~~~y~sv~~i~~~~p~vDlavi~vp~~~ 84 (602)
|++.|.|| +-|+ +++.|++.|+++++.+-.+.+..... -.|-++. .+.-..++.++.. .+|.++-+++...
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~-~~~v~~v~~Dl~d~~~l~~al~---g~d~Vi~~~~~~~ 76 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLK-EWGAELVYGDLSLPETLPPSFK---GVTAIIDASTSRP 76 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHh-hcCCEEEECCCCCHHHHHHHHC---CCCEEEECCCCCC
Confidence 35666653 3333 78888999998654432121110000 0111111 1222234555444 4798887654211
Q ss_pred ------------hHHHHHHHhhCCCCcEEEEecC
Q 007482 85 ------------AAASSMAALKQPTIRVVAIIAE 106 (602)
Q Consensus 85 ------------~~~~~~e~~~~~gv~~~viis~ 106 (602)
....++++|.+.|++.+|.+|+
T Consensus 77 ~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 77 SDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred CCccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 1246789999999998888776
No 230
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=66.60 E-value=19 Score=37.60 Aligned_cols=98 Identities=16% Similarity=0.063 Sum_probs=61.5
Q ss_pred CcEEEEeeCCcH--HHHHHHhcCCeE-EEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhh-
Q 007482 10 TTQALFYNYKQL--PIQRMLDFDFLC-VAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSA- 85 (602)
Q Consensus 10 ~s~avv~g~~~~--~~~~~~~~g~~~-V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~- 85 (602)
++++|+||=.-. ++++|.+.|+++ ++|. |... ....|+..+++.++... +.|.+|..+|....
T Consensus 2 ~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~--~~~~--------~~~~~~~~~~~~~~~~~---~~~~~i~p~~~~~~~ 68 (287)
T TIGR02853 2 IHIAVIGGDARQLELIRKLEELDAKISLIGF--DQLE--------DGFTGAVKCELLELDLT---TLDVVILPVPGTSHD 68 (287)
T ss_pred cEEEEEcccHHHHHHHHHHHHCCCEEEEEec--cccc--------cccccceeecchhhhhc---cCCEEEECCccccCC
Confidence 467888773322 888999999986 4443 4222 12457888888887555 48999999984221
Q ss_pred -------------H-HHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeE
Q 007482 86 -------------A-ASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVI 128 (602)
Q Consensus 86 -------------~-~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~rii 128 (602)
+ .+.++.+. ...++..|+.-.+ +.+.|+++|++++
T Consensus 69 ~~i~~~~~~~~~~l~~~~l~~~~-----~~~~~~~G~~~~~---l~~~a~~~gi~v~ 117 (287)
T TIGR02853 69 GKVATVFSNEKVVLTPELLESTK-----GHCTIYVGISNPY---LEQLAADAGVKLI 117 (287)
T ss_pred ceEecccccCCccccHHHHHhcC-----CCCEEEEecCCHH---HHHHHHHCCCeEE
Confidence 1 24455554 2333445664333 3448899999876
No 231
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=66.40 E-value=26 Score=41.41 Aligned_cols=110 Identities=11% Similarity=-0.021 Sum_probs=61.8
Q ss_pred CcEEEEe-eCCcH-HHHHHHhcCCe-EEEEEeCCCCCCccccccCceeeccc--ccCCHHHHhhcCCCccEEEEecCChh
Q 007482 10 TTQALFY-NYKQL-PIQRMLDFDFL-CVAGIINPGAEGFQKLFFGQEEIAIP--VHSTVEAACAAHPMADVFINFSSFRS 84 (602)
Q Consensus 10 ~s~avv~-g~~~~-~~~~~~~~g~~-~V~gv~~p~~~~~~~~~~g~~v~G~~--~y~sv~~i~~~~p~vDlavi~vp~~~ 84 (602)
++++||| |..|. +.+.+...|+. -|.+++ +.... .+.. .-.|.. ...+..+... +.|++++++|+.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d-~~~~~-~~~a---~~~g~~~~~~~~~~~~~~---~aDvVilavp~~- 74 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVD-RRAKS-LELA---VSLGVIDRGEEDLAEAVS---GADVIVLAVPVL- 74 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEE-CChhH-HHHH---HHCCCCCcccCCHHHHhc---CCCEEEECCCHH-
Confidence 4688886 33333 77777777741 244555 42211 1110 112332 3445666544 479999999986
Q ss_pred hHHHHHHHhhCC-CCcEEEEecCCCCHHHHHHHHHHHHhCCCeeE
Q 007482 85 AAASSMAALKQP-TIRVVAIIAEGVPEADTKQLIAYARSNNKVVI 128 (602)
Q Consensus 85 ~~~~~~e~~~~~-gv~~~viis~Gf~E~~~~~l~~~a~~~g~rii 128 (602)
.+..+++.+... .-+.+|+..++.+....+++.+...+..+|++
T Consensus 75 ~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~ 119 (735)
T PRK14806 75 AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFV 119 (735)
T ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEE
Confidence 478888887631 22346666678876555555555433456654
No 232
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=66.38 E-value=16 Score=38.36 Aligned_cols=89 Identities=17% Similarity=0.165 Sum_probs=51.4
Q ss_pred CcEEEEe-eCCcH-HHHHHHh-cCCeEEEEEe-CCCCCCccccccCceeecccc-cCCHHHHhhcCCCccEEEEecCChh
Q 007482 10 TTQALFY-NYKQL-PIQRMLD-FDFLCVAGII-NPGAEGFQKLFFGQEEIAIPV-HSTVEAACAAHPMADVFINFSSFRS 84 (602)
Q Consensus 10 ~s~avv~-g~~~~-~~~~~~~-~g~~~V~gv~-~p~~~~~~~~~~g~~v~G~~~-y~sv~~i~~~~p~vDlavi~vp~~~ 84 (602)
.+++||| |..|+ ++.++++ -++++++-+. .|...+ + .+ .+-.|++. |.+++++... +++|++++++|...
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~-l-a~--A~~~Gi~~~~~~~e~ll~~-~dIDaV~iaTp~~~ 76 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDG-L-AR--ARELGVKTSAEGVDGLLAN-PDIDIVFDATSAKA 76 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHH-H-HH--HHHCCCCEEECCHHHHhcC-CCCCEEEECCCcHH
Confidence 4688996 22233 5566665 4566644343 132111 0 01 23467775 5688887754 47999999999976
Q ss_pred hHHHHHHHhhCCCCcEEEEec
Q 007482 85 AAASSMAALKQPTIRVVAIIA 105 (602)
Q Consensus 85 ~~~~~~e~~~~~gv~~~viis 105 (602)
..+.+ ..+.++|.. ++..+
T Consensus 77 H~e~a-~~al~aGk~-VIdek 95 (285)
T TIGR03215 77 HARHA-RLLAELGKI-VIDLT 95 (285)
T ss_pred HHHHH-HHHHHcCCE-EEECC
Confidence 54444 445557864 55544
No 233
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=66.10 E-value=17 Score=37.72 Aligned_cols=96 Identities=15% Similarity=0.084 Sum_probs=57.7
Q ss_pred cEEEEe-e-CCcHHHHHHHhcCC-e--EEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhh
Q 007482 11 TQALFY-N-YKQLPIQRMLDFDF-L--CVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSA 85 (602)
Q Consensus 11 s~avv~-g-~~~~~~~~~~~~g~-~--~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~ 85 (602)
++.+|| | +++.+.+.|++.|+ . -|.+.+ +.... .+.+ .+-.|+..+.+..|+.. +.|+++++||+. .
T Consensus 4 ~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~-r~~~~-~~~l--~~~~g~~~~~~~~e~~~---~aDiIiLavkP~-~ 75 (272)
T PRK12491 4 QIGFIGCGNMGIAMIGGMINKNIVSPDQIICSD-LNVSN-LKNA--SDKYGITITTNNNEVAN---SADILILSIKPD-L 75 (272)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCCCceEEEEC-CCHHH-HHHH--HHhcCcEEeCCcHHHHh---hCCEEEEEeChH-H
Confidence 578886 3 33338888888775 1 144554 43221 1111 01135666777777655 479999999985 5
Q ss_pred HHHHHHHhhC--CCCcEEEEecCCCCHHHHH
Q 007482 86 AASSMAALKQ--PTIRVVAIIAEGVPEADTK 114 (602)
Q Consensus 86 ~~~~~e~~~~--~gv~~~viis~Gf~E~~~~ 114 (602)
+.++++.+.. ++=+.+|=+.+|++-...+
T Consensus 76 ~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~ 106 (272)
T PRK12491 76 YSSVINQIKDQIKNDVIVVTIAAGKSIKSTE 106 (272)
T ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCcHHHHH
Confidence 8888888762 1223556667899865433
No 234
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=65.49 E-value=40 Score=30.30 Aligned_cols=70 Identities=17% Similarity=0.141 Sum_probs=43.2
Q ss_pred cccCCHHHHhhcCCCccEEEEecCChhh---HHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCC-eeEcCCc
Q 007482 58 PVHSTVEAACAAHPMADVFINFSSFRSA---AASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNK-VVIGPAT 132 (602)
Q Consensus 58 ~~y~sv~~i~~~~p~vDlavi~vp~~~~---~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~-riiGPNc 132 (602)
|.-..++.+.+ . ++|+++++...... +...++.+.++|.+.+.++.+|=... +..+..++.|+ .+++|+|
T Consensus 38 p~e~~~~~a~~-~-~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~---~~~~~~~~~G~d~~~~~~~ 111 (122)
T cd02071 38 TPEEIVEAAIQ-E-DVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPP---EDYELLKEMGVAEIFGPGT 111 (122)
T ss_pred CHHHHHHHHHH-c-CCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCH---HHHHHHHHCCCCEEECCCC
Confidence 44444454433 3 47999998754332 34567778877776666666663322 22355567888 6899887
No 235
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=64.82 E-value=32 Score=36.74 Aligned_cols=243 Identities=14% Similarity=0.123 Sum_probs=128.1
Q ss_pred CcEEEEeeCCcH----HHHHHHhcCCeEEEEEeCCCCCC---ccccccCce------eecccccCCHHHHhhcCCCccEE
Q 007482 10 TTQALFYNYKQL----PIQRMLDFDFLCVAGIINPGAEG---FQKLFFGQE------EIAIPVHSTVEAACAAHPMADVF 76 (602)
Q Consensus 10 ~s~avv~g~~~~----~~~~~~~~g~~~V~gv~~p~~~~---~~~~~~g~~------v~G~~~y~sv~~i~~~~p~vDla 76 (602)
...+.|-|++|- +++.|+..||++.+-|--|.... ....+.|.+ ...+.-|.|+.++.+. .|.+
T Consensus 6 ~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~g---cdgV 82 (327)
T KOG1502|consen 6 GKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDG---CDGV 82 (327)
T ss_pred CcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhC---CCEE
Confidence 456667777776 88999999999865554343211 122222211 3466677888877653 5555
Q ss_pred EE-ec---------------CChhhHHHHHHHhhCCC-CcEEEEecC----C-----------CCHH-------------
Q 007482 77 IN-FS---------------SFRSAAASSMAALKQPT-IRVVAIIAE----G-----------VPEA------------- 111 (602)
Q Consensus 77 vi-~v---------------p~~~~~~~~~e~~~~~g-v~~~viis~----G-----------f~E~------------- 111 (602)
+= +- |+-.....++|+|.+.. ||.+|+.|| . +.|+
T Consensus 83 fH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~~~~ 162 (327)
T KOG1502|consen 83 FHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRCKKL 162 (327)
T ss_pred EEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHHHHhhHH
Confidence 41 11 22222457899999877 999998775 1 1122
Q ss_pred --------HHHHHHHHHHhCCCeeEcCCcccccccCcccccccCCcccccccccCCCCCcEEEEecChhHHHHHHHHHHh
Q 007482 112 --------DTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIAR 183 (602)
Q Consensus 112 --------~~~~l~~~a~~~g~riiGPNc~G~~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQSG~l~~~~~~~~~~ 183 (602)
.|+.--++|++.|+.++ .+||.. -+| |. +.| -+--|-.+...++.-...
T Consensus 163 ~Y~~sK~lAEkaAw~fa~e~~~~lv------~inP~l-V~G----------P~--l~~----~l~~s~~~~l~~i~G~~~ 219 (327)
T KOG1502|consen 163 WYALSKTLAEKAAWEFAKENGLDLV------TINPGL-VFG----------PG--LQP----SLNSSLNALLKLIKGLAE 219 (327)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccEE------EecCCc-eEC----------CC--ccc----ccchhHHHHHHHHhcccc
Confidence 24556778888877654 345544 221 10 011 111122222222221111
Q ss_pred cCCceeEEeeccCCCCCCC-CHHHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHhcCCCCCEEEEEeCcCccCcccc
Q 007482 184 VTDGIYEGIAIGGDVFPGS-TLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSE 262 (602)
Q Consensus 184 ~g~G~s~~vs~Gn~~~~dv-~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~~~KPVv~~k~Gr~~~g~~~~ 262 (602)
...++... +.|+ |.++.--..-++|.++.--+... ....-.++++.+++.-...||---
T Consensus 220 ~~~n~~~~-------~VdVrDVA~AHv~a~E~~~a~GRyic~~-~~~~~~ei~~~l~~~~P~~~ip~~------------ 279 (327)
T KOG1502|consen 220 TYPNFWLA-------FVDVRDVALAHVLALEKPSAKGRYICVG-EVVSIKEIADILRELFPDYPIPKK------------ 279 (327)
T ss_pred cCCCCcee-------eEeHHHHHHHHHHHHcCcccCceEEEec-CcccHHHHHHHHHHhCCCCCCCCC------------
Confidence 22222221 1122 23344445678999888777777 666677888888875434341111
Q ss_pred ccccccCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHH
Q 007482 263 VQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESA 303 (602)
Q Consensus 263 aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~ 303 (602)
-.-+|-+.+.. . .+.+.-++..|...-..++|.+.-
T Consensus 280 ~~~~~~~~~~~-~----~~~~~k~k~lg~~~~~~l~e~~~d 315 (327)
T KOG1502|consen 280 NAEEHEGFLTS-F----KVSSEKLKSLGGFKFRPLEETLSD 315 (327)
T ss_pred CCccccccccc-c----ccccHHHHhcccceecChHHHHHH
Confidence 11122111110 1 344567788887777788776543
No 236
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=64.41 E-value=1.6e+02 Score=31.79 Aligned_cols=175 Identities=13% Similarity=0.058 Sum_probs=105.4
Q ss_pred ChhhHHHHHHHhhCCCCcEEEEecCCCCHH---HHHHHHHHHH-hCCCeeEcCCcccccccCcccccccCCcccccc-c-
Q 007482 82 FRSAAASSMAALKQPTIRVVAIIAEGVPEA---DTKQLIAYAR-SNNKVVIGPATVGGIQAGAFKIGDTAGTIDNII-H- 155 (602)
Q Consensus 82 ~~~~~~~~~e~~~~~gv~~~viis~Gf~E~---~~~~l~~~a~-~~g~riiGPNc~G~~~~~~~~l~~~~~~~~~~~-p- 155 (602)
.......+.+.+.+.+-+.++|+++..++. |.+.+.+.++ +.|++++--+|-|+-.....+.......+...+ +
T Consensus 65 ~e~l~~~i~~~~~~~~p~~i~v~~tc~~~liGdDi~~v~~~~~~~~~~~vv~~~~~gf~~~~~~G~~~a~~~~~~~~~~~ 144 (399)
T cd00316 65 GEKLLEAIINELKRYKPKVIFVYTTCTTELIGDDIEAVAKEASKEIGIPVVPASTPGFRGSQSAGYDAAVKAIIDHLVGT 144 (399)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCchhhhhccCHHHHHHHHHHhhCCceEEeeCCCCcccHHHHHHHHHHHHHHHHhcc
Confidence 444566777777766778999999988887 4444444433 468999999999987322111100000011111 1
Q ss_pred --ccCCCCCcEEEEecChhH---HHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEE-EEEecCCC
Q 007482 156 --CKLYRPGSVGFVSKSGGM---SNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMV-VLGELGGR 229 (602)
Q Consensus 156 --~~~~~~G~valvSQSG~l---~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~-ly~E~g~~ 229 (602)
.....++.|-++.-+... ..++-..+++.|+.+..+.+.|... .| +.+-++-+..+ ++- .
T Consensus 145 ~~~~~~~~~~vNlig~~~~~~~d~~el~~ll~~~G~~v~~~~~~~~s~------~~----i~~~~~A~~nlv~~~----~ 210 (399)
T cd00316 145 AEPEETEPGSVNLIGGYNLGGGDLRELKRLLEEMGIRVNALFDGGTTV------EE----LRELGNAKLNLVLCR----E 210 (399)
T ss_pred cCcCCCCCCcEEEECCCCCchhhHHHHHHHHHHcCCcEEEEcCCCCCH------HH----HHhhccCcEEEEecH----h
Confidence 123467889888866653 3677778887788887777665553 33 34444444433 333 2
Q ss_pred cHHHHHHHHHhcCCCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHHHHHHHcCC
Q 007482 230 DEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGA 291 (602)
Q Consensus 230 ~~~~f~~~~r~~~~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGv 291 (602)
.+..+++.+++- .+.|.+... +-| -.+|++-+.++.+..|.
T Consensus 211 ~g~~~a~~l~~~-~g~p~~~~~----p~G----------------~~~t~~~l~~i~~~~g~ 251 (399)
T cd00316 211 SGLYLARYLEEK-YGIPYILIN----PIG----------------LEATDAFLRKLAELFGI 251 (399)
T ss_pred HHHHHHHHHHHH-hCCCeEEeC----CcC----------------HHHHHHHHHHHHHHhCC
Confidence 456667776653 578877663 333 12455888888888886
No 237
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=63.90 E-value=23 Score=39.19 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=20.6
Q ss_pred CCCCcEEEEe-eCCcHHHHHHHhcCCeEEEEEe
Q 007482 7 FSKTTQALFY-NYKQLPIQRMLDFDFLCVAGII 38 (602)
Q Consensus 7 ~~p~s~avv~-g~~~~~~~~~~~~g~~~V~gv~ 38 (602)
+.|++|+||| |..|..+...+..+|+++ |++
T Consensus 4 ~~~mkI~vIGlGyvGlpmA~~la~~~~V~-g~D 35 (425)
T PRK15182 4 IDEVKIAIIGLGYVGLPLAVEFGKSRQVV-GFD 35 (425)
T ss_pred CCCCeEEEECcCcchHHHHHHHhcCCEEE-EEe
Confidence 5789999997 666664444455578764 554
No 238
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=63.04 E-value=8.8 Score=40.17 Aligned_cols=118 Identities=14% Similarity=0.111 Sum_probs=62.2
Q ss_pred CCCCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccc--cCCHHHHhhcCCCccEEEEecCC
Q 007482 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPV--HSTVEAACAAHPMADVFINFSSF 82 (602)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~--y~sv~~i~~~~p~vDlavi~vp~ 82 (602)
+.-+++.|+| |..|+ +.+.+..+|.++. ..+ .... +.... .-.|... |.++.+... +.|+++.++|.
T Consensus 149 l~gk~v~IiG~G~iG~avA~~L~~~G~~V~-v~~-R~~~-~~~~~---~~~g~~~~~~~~l~~~l~---~aDiVint~P~ 219 (287)
T TIGR02853 149 IHGSNVMVLGFGRTGMTIARTFSALGARVF-VGA-RSSA-DLARI---TEMGLIPFPLNKLEEKVA---EIDIVINTIPA 219 (287)
T ss_pred CCCCEEEEEcChHHHHHHHHHHHHCCCEEE-EEe-CCHH-HHHHH---HHCCCeeecHHHHHHHhc---cCCEEEECCCh
Confidence 3456777776 33344 7777888998752 232 2111 00000 0013332 334555443 58999999987
Q ss_pred hhhHHHHHHHhhCCCCcEEEE-ecCCCCHHHHHHHHHHHHhCCCee-EcCCcccccccCc
Q 007482 83 RSAAASSMAALKQPTIRVVAI-IAEGVPEADTKQLIAYARSNNKVV-IGPATVGGIQAGA 140 (602)
Q Consensus 83 ~~~~~~~~e~~~~~gv~~~vi-is~Gf~E~~~~~l~~~a~~~g~ri-iGPNc~G~~~~~~ 140 (602)
.......++.+. ++ .++| +++.=.+++ + +.|++.|++. +=||-.|.+.|..
T Consensus 220 ~ii~~~~l~~~k-~~--aliIDlas~Pg~td---f-~~Ak~~G~~a~~~~glPg~~ap~t 272 (287)
T TIGR02853 220 LVLTADVLSKLP-KH--AVIIDLASKPGGTD---F-EYAKKRGIKALLAPGLPGIVAPKT 272 (287)
T ss_pred HHhCHHHHhcCC-CC--eEEEEeCcCCCCCC---H-HHHHHCCCEEEEeCCCCcccCchh
Confidence 532234455443 32 2333 343222222 3 6889999974 4577777776654
No 239
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=62.57 E-value=11 Score=43.63 Aligned_cols=90 Identities=14% Similarity=0.073 Sum_probs=54.8
Q ss_pred CHHHHHHHhhcCCCccEEEEEEecCC---C--cHHHHHHHHHhcC-CCCCEEEEEeCcCccCcc-----ccccccccCCc
Q 007482 203 TLSDHILRFNNIPQVKMMVVLGELGG---R--DEYSLVEALKQGK-VNKPVVAWVSGTCARLFK-----SEVQFGHAGAK 271 (602)
Q Consensus 203 ~~~d~l~~l~~Dp~t~~I~ly~E~g~---~--~~~~f~~~~r~~~-~~KPVv~~k~Gr~~~g~~-----~~aa~sHtgal 271 (602)
++.+.|+...+||++|.|+|.+. +. . .-++..+++++.+ .+|||+++--+-++.++= .+-....+|++
T Consensus 80 ~i~~~i~~A~~D~~IkgIvL~i~-~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~~~~s~~YylAs~AD~I~~~p~G~v 158 (584)
T TIGR00705 80 DIVNAIRQAADDRRIEGLVFDLS-NFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTNYSQGQYYLASFADEIILNPMGSV 158 (584)
T ss_pred HHHHHHHHHhcCCCceEEEEEcc-CCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEccccchhhhhhhhCCEEEECCCceE
Confidence 56667778889999999999998 43 1 2356777777776 689999986544332210 11112223433
Q ss_pred CCCCcc-hHHHHHHHHHHcCCcc
Q 007482 272 SGGEME-SAQAKNQALRDAGAVV 293 (602)
Q Consensus 272 ag~~~~-~a~~~~a~~~qaGvi~ 293 (602)
.-..-. .-.-|..+|++.||-.
T Consensus 159 ~~~G~~~~~~~~k~~ldKlGV~~ 181 (584)
T TIGR00705 159 DLHGFYTETLFYKGMLDKLGVRW 181 (584)
T ss_pred EeeceecccccHHHHHHHcCCeE
Confidence 211100 0123788999999865
No 240
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=62.47 E-value=39 Score=36.31 Aligned_cols=87 Identities=15% Similarity=0.063 Sum_probs=51.0
Q ss_pred CCCCcEEEEeeCCcH---HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCCh
Q 007482 7 FSKTTQALFYNYKQL---PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFR 83 (602)
Q Consensus 7 ~~p~s~avv~g~~~~---~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~ 83 (602)
..|.+.+.|-|++|- .+|.....|.++++--.-+.+....+++..+.+..-. -++..+...+ .+|+++.+++ .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~-~~~~~~~~~~--~~d~ii~tv~-~ 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSS-DSDALEAVKE--IADAIIDTVG-P 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcC-CchhhHHhHh--hCcEEEECCC-h
Confidence 567777777788776 5666666888875433312222222334333333222 2222222222 2899999999 6
Q ss_pred hhHHHHHHHhhCCC
Q 007482 84 SAAASSMAALKQPT 97 (602)
Q Consensus 84 ~~~~~~~e~~~~~g 97 (602)
.+++..++.+...|
T Consensus 240 ~~~~~~l~~l~~~G 253 (339)
T COG1064 240 ATLEPSLKALRRGG 253 (339)
T ss_pred hhHHHHHHHHhcCC
Confidence 77899999998544
No 241
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=62.24 E-value=6.1 Score=36.52 Aligned_cols=112 Identities=16% Similarity=0.060 Sum_probs=55.6
Q ss_pred CCCCcEEEEee-CCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecc----cccCCHHHHhhcCCCccEEEEec
Q 007482 7 FSKTTQALFYN-YKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAI----PVHSTVEAACAAHPMADVFINFS 80 (602)
Q Consensus 7 ~~p~s~avv~g-~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~----~~y~sv~~i~~~~p~vDlavi~v 80 (602)
++++++.++|. ..++ ..+++...|..-|...+ ..... .+.+ .+..+. ..+.+..+..+ ++|++|+++
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~-r~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~---~~Dvvi~~~ 89 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVN-RTLEK-AKAL--AERFGELGIAIAYLDLEELLA---EADLIINTT 89 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEc-CCHHH-HHHH--HHHHhhcccceeecchhhccc---cCCEEEeCc
Confidence 55677887852 2223 77788877633233333 21110 0000 001111 13445555433 589999999
Q ss_pred CChhh-HHH--HHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEc
Q 007482 81 SFRSA-AAS--SMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIG 129 (602)
Q Consensus 81 p~~~~-~~~--~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiG 129 (602)
|.... ++. ..+.+.+.+. .++-++ -.++.. ++.+.+++.|++++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~-~v~D~~-~~~~~~--~l~~~~~~~g~~~v~ 137 (155)
T cd01065 90 PVGMKPGDELPLPPSLLKPGG-VVYDVV-YNPLET--PLLKEARALGAKTID 137 (155)
T ss_pred CCCCCCCCCCCCCHHHcCCCC-EEEEcC-cCCCCC--HHHHHHHHCCCceeC
Confidence 98652 111 1122222332 233233 234432 788889999987664
No 242
>PRK08462 biotin carboxylase; Validated
Probab=62.06 E-value=55 Score=36.14 Aligned_cols=105 Identities=13% Similarity=0.065 Sum_probs=65.0
Q ss_pred CCcEEEEeeCCc---HHHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCC---
Q 007482 9 KTTQALFYNYKQ---LPIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSF--- 82 (602)
Q Consensus 9 p~s~avv~g~~~---~~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~--- 82 (602)
++++++|.|.+. ++++.+.+.|+..|+..+++... ++.+.. .|-.+. +++
T Consensus 3 ~~k~ili~~~g~~~~~~~~~~~~~G~~~v~~~~~~d~~----------------~~~~~~-------ad~~~~-~~~~~~ 58 (445)
T PRK08462 3 EIKRILIANRGEIALRAIRTIQEMGKEAIAIYSTADKD----------------ALYLKY-------ADAKIC-IGGAKS 58 (445)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEechhhcC----------------Cchhhh-------CCEEEE-eCCCch
Confidence 566777766443 37888888999876444422111 111221 244443 321
Q ss_pred --hh-hHHHHHHHhhCCCCcEEEEecCCC-CHHHHHHHHHHHHhCCCeeEcCCcccccccCc
Q 007482 83 --RS-AAASSMAALKQPTIRVVAIIAEGV-PEADTKQLIAYARSNNKVVIGPATVGGIQAGA 140 (602)
Q Consensus 83 --~~-~~~~~~e~~~~~gv~~~viis~Gf-~E~~~~~l~~~a~~~g~riiGPNc~G~~~~~~ 140 (602)
.+ ..+.+++.|.+.++..++.. .|| +|. ..+.+.+++.|++++||+.-.+-...+
T Consensus 59 ~~~y~~~~~l~~~~~~~~~D~i~pg-~g~lse~--~~~a~~~e~~Gi~~~g~~~~~~~~~~d 117 (445)
T PRK08462 59 SESYLNIPAIISAAEIFEADAIFPG-YGFLSEN--QNFVEICSHHNIKFIGPSVEVMALMSD 117 (445)
T ss_pred hcccCCHHHHHHHHHHcCCCEEEEC-CCccccC--HHHHHHHHHCCCeEECcCHHHHHHhCC
Confidence 11 24689999999999876654 455 443 456678899999999999766655554
No 243
>PRK06487 glycerate dehydrogenase; Provisional
Probab=62.04 E-value=22 Score=37.77 Aligned_cols=100 Identities=11% Similarity=-0.014 Sum_probs=61.6
Q ss_pred CCCCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChh
Q 007482 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRS 84 (602)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~ 84 (602)
+.=+++.||| |.-|+ +.+.+..+|.+++ +.+ +... .+ .. -+.++.|+.+ +.|++++.+|...
T Consensus 146 l~gktvgIiG~G~IG~~vA~~l~~fgm~V~-~~~-~~~~--------~~--~~-~~~~l~ell~---~sDiv~l~lPlt~ 209 (317)
T PRK06487 146 LEGKTLGLLGHGELGGAVARLAEAFGMRVL-IGQ-LPGR--------PA--RP-DRLPLDELLP---QVDALTLHCPLTE 209 (317)
T ss_pred cCCCEEEEECCCHHHHHHHHHHhhCCCEEE-EEC-CCCC--------cc--cc-cccCHHHHHH---hCCEEEECCCCCh
Confidence 4446888886 54455 6666667998865 444 4221 01 11 2458999887 4699999999754
Q ss_pred hHH-----HHHHHhhCCCCcEEEEecCCCCHH-HHHHHHHHHHhCCCe
Q 007482 85 AAA-----SSMAALKQPTIRVVAIIAEGVPEA-DTKQLIAYARSNNKV 126 (602)
Q Consensus 85 ~~~-----~~~e~~~~~gv~~~viis~Gf~E~-~~~~l~~~a~~~g~r 126 (602)
... +.++.+. +.+++|-.|=++. +++.|++..++..++
T Consensus 210 ~T~~li~~~~~~~mk----~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 253 (317)
T PRK06487 210 HTRHLIGARELALMK----PGALLINTARGGLVDEQALADALRSGHLG 253 (317)
T ss_pred HHhcCcCHHHHhcCC----CCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 332 3344443 3455565555544 788898888876554
No 244
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=60.98 E-value=16 Score=39.14 Aligned_cols=46 Identities=24% Similarity=0.331 Sum_probs=33.7
Q ss_pred cccccCCHHHHhhcCCCccEEEEecCChhhHHHHHHHhhCCCCcEEEEecCC
Q 007482 56 AIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEG 107 (602)
Q Consensus 56 G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~~e~~~~~gv~~~viis~G 107 (602)
|++++.+..++.. ++|+++.|+|... .....+.+.++|. .+|++++
T Consensus 65 ~i~V~~~~~el~~---~vDVVIdaT~~~~-~~e~a~~~~~aGk--~VI~~~~ 110 (341)
T PRK04207 65 GIPVAGTIEDLLE---KADIVVDATPGGV-GAKNKELYEKAGV--KAIFQGG 110 (341)
T ss_pred ceEEcCChhHhhc---cCCEEEECCCchh-hHHHHHHHHHCCC--EEEEcCC
Confidence 6788888888764 4899999998864 5666777777883 3445655
No 245
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=60.68 E-value=39 Score=35.96 Aligned_cols=105 Identities=13% Similarity=0.091 Sum_probs=61.7
Q ss_pred CCCCcEEEEe-eCCcH-HHHHHH-hcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCCh
Q 007482 7 FSKTTQALFY-NYKQL-PIQRML-DFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFR 83 (602)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~~~-~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~ 83 (602)
+.=+++.||| |.-|+ +.+.+. .+|.+++ +.+ |...... .+-.|.+ |.|+.|+.. +.|++++.+|..
T Consensus 143 L~gktvGIiG~G~IG~~va~~l~~~fgm~V~-~~~-~~~~~~~-----~~~~~~~-~~~l~ell~---~sDvv~lh~plt 211 (323)
T PRK15409 143 VHHKTLGIVGMGRIGMALAQRAHFGFNMPIL-YNA-RRHHKEA-----EERFNAR-YCDLDTLLQ---ESDFVCIILPLT 211 (323)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHhcCCCEEE-EEC-CCCchhh-----HHhcCcE-ecCHHHHHH---hCCEEEEeCCCC
Confidence 4557888886 55566 555665 5777754 332 3211000 1122333 669999887 479999999975
Q ss_pred hhHH-----HHHHHhhCCCCcEEEEecCCCCHH-HHHHHHHHHHhCCCe
Q 007482 84 SAAA-----SSMAALKQPTIRVVAIIAEGVPEA-DTKQLIAYARSNNKV 126 (602)
Q Consensus 84 ~~~~-----~~~e~~~~~gv~~~viis~Gf~E~-~~~~l~~~a~~~g~r 126 (602)
.... ..++.+. +.+++|-.+=++. +++.|++..++..+.
T Consensus 212 ~~T~~li~~~~l~~mk----~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 256 (323)
T PRK15409 212 DETHHLFGAEQFAKMK----SSAIFINAGRGPVVDENALIAALQKGEIH 256 (323)
T ss_pred hHHhhccCHHHHhcCC----CCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 4332 2344443 3455555555444 888898888776443
No 246
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=60.07 E-value=36 Score=37.76 Aligned_cols=83 Identities=14% Similarity=0.006 Sum_probs=49.5
Q ss_pred CcEEEEeeCCc--HHHHHHHh----cCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHh---hcCCCccEEEEec
Q 007482 10 TTQALFYNYKQ--LPIQRMLD----FDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAAC---AAHPMADVFINFS 80 (602)
Q Consensus 10 ~s~avv~g~~~--~~~~~~~~----~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~---~~~p~vDlavi~v 80 (602)
+.+.|| |.+. ..++.+++ .||+.|+-+. ..... ..+.|+|++.+++|+. .++ ++|.+++++
T Consensus 125 rrvLII-Gag~~~~~L~~l~~~~~~~g~~vVGfi~-~dd~~-------~~i~gvpVlG~~~dl~~~v~~~-~Id~ViIAl 194 (442)
T TIGR03013 125 RRILVL-GTGPRAREIARLRRSSDRRGHEIVGFVP-LPDEP-------AYVPSEHVIENGDGLVEYVLRH-RIDEIVIAL 194 (442)
T ss_pred CcEEEE-ECCHHHHHHHHHHHhCccCCeEEEEEEc-CCccc-------cccCCCcccCCHHHHHHHHHhC-CCCEEEEEC
Confidence 456666 4433 34455542 5788775452 21111 2577899998877653 344 589999999
Q ss_pred CChhhH--HHHHHHhhCCCCcEEE
Q 007482 81 SFRSAA--ASSMAALKQPTIRVVA 102 (602)
Q Consensus 81 p~~~~~--~~~~e~~~~~gv~~~v 102 (602)
|..... ...++.|.+.|++-.+
T Consensus 195 p~~~~~~~~~~l~~~~~~gv~V~i 218 (442)
T TIGR03013 195 DERRGSLPVDELLECKLSGIEVVD 218 (442)
T ss_pred chhhcchHHHHHHHHHhCCCEEEE
Confidence 864321 1346778877887443
No 247
>PLN02928 oxidoreductase family protein
Probab=60.03 E-value=25 Score=37.89 Aligned_cols=110 Identities=10% Similarity=0.010 Sum_probs=61.2
Q ss_pred CCCCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccC------cee--ecccccCCHHHHhhcCCCccEE
Q 007482 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFG------QEE--IAIPVHSTVEAACAAHPMADVF 76 (602)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g------~~v--~G~~~y~sv~~i~~~~p~vDla 76 (602)
+.=+++.||| |..|+ +.+.+..+|++++ +.+ |..........+ .+. .+. -|.++.++.. +.|++
T Consensus 157 l~gktvGIiG~G~IG~~vA~~l~afG~~V~-~~d-r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~---~aDiV 230 (347)
T PLN02928 157 LFGKTVFILGYGAIGIELAKRLRPFGVKLL-ATR-RSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAG---EADIV 230 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhhCCCEEE-EEC-CCCChhhhhhhccccccccccccccC-cccCHHHHHh---hCCEE
Confidence 4446788886 44455 7777777999864 444 421100000000 000 011 4678999886 47999
Q ss_pred EEecCChhhHH-----HHHHHhhCCCCcEEEEecCCCCHH-HHHHHHHHHHhCCCe
Q 007482 77 INFSSFRSAAA-----SSMAALKQPTIRVVAIIAEGVPEA-DTKQLIAYARSNNKV 126 (602)
Q Consensus 77 vi~vp~~~~~~-----~~~e~~~~~gv~~~viis~Gf~E~-~~~~l~~~a~~~g~r 126 (602)
++++|...... ..++.+. +.+++|-.|=++. +++.|++..++..++
T Consensus 231 vl~lPlt~~T~~li~~~~l~~Mk----~ga~lINvaRG~lVde~AL~~AL~~g~i~ 282 (347)
T PLN02928 231 VLCCTLTKETAGIVNDEFLSSMK----KGALLVNIARGGLLDYDAVLAALESGHLG 282 (347)
T ss_pred EECCCCChHhhcccCHHHHhcCC----CCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 99999643332 2333333 2345555444443 788888888776543
No 248
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=59.69 E-value=1.8e+02 Score=28.93 Aligned_cols=149 Identities=14% Similarity=0.082 Sum_probs=67.7
Q ss_pred HHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCcc------cccccCcccccccCCcccccccccCCC
Q 007482 87 ASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATV------GGIQAGAFKIGDTAGTIDNIIHCKLYR 160 (602)
Q Consensus 87 ~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc~------G~~~~~~~~l~~~~~~~~~~~p~~~~~ 160 (602)
...++.+...++.++|+.+.. .+ ...+.++.+++.|+.++.-|+. ..+.+.....+ -.....+-.....
T Consensus 50 ~~~~~~~~~~~vdgiIi~~~~-~~-~~~~~l~~~~~~~iPvv~~~~~~~~~~~~~v~~d~~~~g---~~~~~~l~~~~~g 124 (272)
T cd06300 50 IADIRNLIAQGVDAIIINPAS-PT-ALNPVIEEACEAGIPVVSFDGTVTTPCAYNVNEDQAEFG---KQGAEWLVKELGG 124 (272)
T ss_pred HHHHHHHHHcCCCEEEEeCCC-hh-hhHHHHHHHHHCCCeEEEEecCCCCCceeEecCCHHHHH---HHHHHHHHHHcCC
Confidence 355555555688877775532 12 1223456667778877765532 11111110000 0000000000013
Q ss_pred CCcEEEEec-Chh-----HHHHHHHHHHhcC-CceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHHH
Q 007482 161 PGSVGFVSK-SGG-----MSNELYNTIARVT-DGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYS 233 (602)
Q Consensus 161 ~G~valvSQ-SG~-----l~~~~~~~~~~~g-~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~ 233 (602)
.++|++++- .+. -...+.+.+.+.+ +-+...+. ++... +-...-+-+++...|+.++|++.-. . ...
T Consensus 125 ~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~l~~~~~~~~i~~~~d---~-A~g 198 (272)
T cd06300 125 KGNVLVVRGLAGHPVDEDRYAGAKEVLKEYPGIKIVGEVY-GDWDQ-AVAQKAVADFLASNPDVDGIWTQGG---D-AVG 198 (272)
T ss_pred CceEEEEECCCCCcchHHHHHHHHHHHHHCCCcEEEeecC-CCCCH-HHHHHHHHHHHHhCCCcCEEEecCC---C-cHH
Confidence 456888852 111 1222334444444 43322222 22210 2223344455666777777766655 3 566
Q ss_pred HHHHHHhcCCCCC
Q 007482 234 LVEALKQGKVNKP 246 (602)
Q Consensus 234 f~~~~r~~~~~KP 246 (602)
+++++++...+.|
T Consensus 199 ~~~al~~~g~~~p 211 (272)
T cd06300 199 AVQAFEQAGRDIP 211 (272)
T ss_pred HHHHHHHcCCCCc
Confidence 7777777544445
No 249
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=59.50 E-value=51 Score=36.90 Aligned_cols=81 Identities=12% Similarity=0.019 Sum_probs=43.2
Q ss_pred CCcEEEEeeCCcH---HHHHHHh---cCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhh---cCCCccEEEEe
Q 007482 9 KTTQALFYNYKQL---PIQRMLD---FDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACA---AHPMADVFINF 79 (602)
Q Consensus 9 p~s~avv~g~~~~---~~~~~~~---~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~---~~p~vDlavi~ 79 (602)
.+.+.|| |++.. ..+.|.+ .||+.|+-++ .... .| .++|++.+++|+.+ ++ ++|-++|+
T Consensus 143 ~rrVLIv-GaG~~g~~l~~~L~~~~~~g~~vVGfiD-dd~~------~g---~~VpvlG~~~dL~~~v~~~-~IdeViIA 210 (463)
T PRK10124 143 KRMVAVA-GDLPAGQMLLESFRNEPWLGFEVVGVYH-DPKP------GG---VSNDWAGNLQQLVEDAKAG-KIHNVYIA 210 (463)
T ss_pred CCcEEEE-ECCHHHHHHHHHHhcCccCCeEEEEEEe-CCcc------cc---CCCCcCCCHHHHHHHHHhC-CCCEEEEe
Confidence 3456666 44333 5555554 4788775444 1110 01 22355777666432 33 47888887
Q ss_pred cCChh--hHHHHHHHhhCCCCcEE
Q 007482 80 SSFRS--AAASSMAALKQPTIRVV 101 (602)
Q Consensus 80 vp~~~--~~~~~~e~~~~~gv~~~ 101 (602)
+|... ....+++.|.+.+++.-
T Consensus 211 ip~~~~~~l~ell~~~~~~~v~V~ 234 (463)
T PRK10124 211 MSMCDGARVKKLVRQLADTTCSVL 234 (463)
T ss_pred CCCcchHHHHHHHHHHHHcCCeEE
Confidence 77532 23456667776666533
No 250
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=59.41 E-value=39 Score=35.26 Aligned_cols=92 Identities=11% Similarity=0.065 Sum_probs=48.7
Q ss_pred CcEEEEe-e-CCcHHHHHHHhcCCeE-EEEEeCCCCCCccccccCceeecc-ccc-CCH-HHHhhcCCCccEEEEecCCh
Q 007482 10 TTQALFY-N-YKQLPIQRMLDFDFLC-VAGIINPGAEGFQKLFFGQEEIAI-PVH-STV-EAACAAHPMADVFINFSSFR 83 (602)
Q Consensus 10 ~s~avv~-g-~~~~~~~~~~~~g~~~-V~gv~~p~~~~~~~~~~g~~v~G~-~~y-~sv-~~i~~~~p~vDlavi~vp~~ 83 (602)
+.+.|+| | +++...+.+.+.|+.. |.|.. ......+. ..-.|+ ..+ .+. .+... +.|++|++||-.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d-~~~~~~~~----a~~lgv~d~~~~~~~~~~~~---~aD~VivavPi~ 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRD-RSAATLKA----ALELGVIDELTVAGLAEAAA---EADLVIVAVPIE 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeec-CcHHHHHH----HhhcCcccccccchhhhhcc---cCCEEEEeccHH
Confidence 3455565 3 4444888888888875 66665 42221000 011222 222 222 22111 479999999997
Q ss_pred hhHHHHHHHhhC-CCCcEEEEecCCCCH
Q 007482 84 SAAASSMAALKQ-PTIRVVAIIAEGVPE 110 (602)
Q Consensus 84 ~~~~~~~e~~~~-~gv~~~viis~Gf~E 110 (602)
. ...++++... .....+|+=.+.+..
T Consensus 76 ~-~~~~l~~l~~~l~~g~iv~Dv~S~K~ 102 (279)
T COG0287 76 A-TEEVLKELAPHLKKGAIVTDVGSVKS 102 (279)
T ss_pred H-HHHHHHHhcccCCCCCEEEecccccH
Confidence 4 7888988873 223333332334444
No 251
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=59.00 E-value=23 Score=37.38 Aligned_cols=93 Identities=15% Similarity=0.153 Sum_probs=54.8
Q ss_pred CCCcEEEEe-eCCcH-HHHHHHh-cCCeEEEEEe-CCCCCCccccccCceeecccc-cCCHHHHhhc--CCCccEEEEec
Q 007482 8 SKTTQALFY-NYKQL-PIQRMLD-FDFLCVAGII-NPGAEGFQKLFFGQEEIAIPV-HSTVEAACAA--HPMADVFINFS 80 (602)
Q Consensus 8 ~p~s~avv~-g~~~~-~~~~~~~-~g~~~V~gv~-~p~~~~~~~~~~g~~v~G~~~-y~sv~~i~~~--~p~vDlavi~v 80 (602)
++..++||| |..|+ ++..+++ -+.++++-+. .|...+. .+ .+-.|++. |.+++++++. .+++|++++++
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gl--a~--A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT 78 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGL--AR--ARRLGVATSAEGIDGLLAMPEFDDIDIVFDAT 78 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHH--HH--HHHcCCCcccCCHHHHHhCcCCCCCCEEEECC
Confidence 456789997 32233 5666665 3456643333 0321110 00 23468886 6889998763 14699999999
Q ss_pred CChhhHHHHHHHhhCCCCcEEEEecC
Q 007482 81 SFRSAAASSMAALKQPTIRVVAIIAE 106 (602)
Q Consensus 81 p~~~~~~~~~e~~~~~gv~~~viis~ 106 (602)
|+.. -....+.+.++|+. ++..+.
T Consensus 79 ~a~~-H~e~a~~a~eaGk~-VID~sP 102 (302)
T PRK08300 79 SAGA-HVRHAAKLREAGIR-AIDLTP 102 (302)
T ss_pred CHHH-HHHHHHHHHHcCCe-EEECCc
Confidence 9875 44555556667864 555454
No 252
>COG0372 GltA Citrate synthase [Energy production and conversion]
Probab=57.51 E-value=7.3 Score=42.60 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=39.2
Q ss_pred HHHHHhhhcCCC--cccCCCCCcccccCCCcHHHHHHHhhhCCCCchhHHHHHHH
Q 007482 347 IISTISDDRGEE--PCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEI 399 (602)
Q Consensus 347 i~t~I~~~~g~~--i~~rg~dL~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~ 399 (602)
..|+|++..++. +.|||+++.||..+. +|.++.|+||.|+-|+..+.+.+..
T Consensus 26 ~~t~is~id~~~g~L~yrGy~i~dla~~~-~feev~~LLl~G~lPt~~el~~~~~ 79 (390)
T COG0372 26 CETAISYIDGDGGILRYRGYDIEDLAEKS-SFEEVAYLLLYGELPTKAELAAFFA 79 (390)
T ss_pred eeeeeeEecCCCceEEECCccHHHHHhhc-CHHHHHHHHHcCcCCChHHHHHHHH
Confidence 345677766655 889999999999886 9999999999887776555333333
No 253
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=57.27 E-value=62 Score=33.27 Aligned_cols=117 Identities=10% Similarity=0.014 Sum_probs=69.9
Q ss_pred cEEEEe-e-CCcHHHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhHHH
Q 007482 11 TQALFY-N-YKQLPIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAAS 88 (602)
Q Consensus 11 s~avv~-g-~~~~~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~ 88 (602)
.+-+|| | ++.++.+++++.|..+|+--..|..-. + -.-.|.+.-.|+.+.....+.+-.+=+.||+...+++
T Consensus 2 ~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~---~---~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~ 75 (300)
T COG1023 2 QIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVE---E---LKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDA 75 (300)
T ss_pred cceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHH---H---HHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHH
Confidence 345564 3 444489999999999853322241110 1 1124566677888877665556788889999877899
Q ss_pred HHHHhhCCCCcEEEEecCCCCH-HHHHHHHHHHHhCCCeeEcCCcc
Q 007482 89 SMAALKQPTIRVVAIIAEGVPE-ADTKQLIAYARSNNKVVIGPATV 133 (602)
Q Consensus 89 ~~e~~~~~gv~~~viis~Gf~E-~~~~~l~~~a~~~g~riiGPNc~ 133 (602)
+++++...==+.=+||-.|=+- .+..+-.+...++|+.++=..+-
T Consensus 76 vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTS 121 (300)
T COG1023 76 VIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTS 121 (300)
T ss_pred HHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCC
Confidence 9999875433444555554321 13333344556678776654443
No 254
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=57.26 E-value=85 Score=32.36 Aligned_cols=116 Identities=9% Similarity=-0.010 Sum_probs=69.7
Q ss_pred CcEEEEeeCCcH--HHHHHHhcC-CeEEEEEeCCCCCC-ccccccCceeecccccCCHHHHhhcCCCccEEEEecCChh-
Q 007482 10 TTQALFYNYKQL--PIQRMLDFD-FLCVAGIINPGAEG-FQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRS- 84 (602)
Q Consensus 10 ~s~avv~g~~~~--~~~~~~~~g-~~~V~gv~~p~~~~-~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~- 84 (602)
+++.|+||.+.. +.+.|..++ +.++.-.. . .+. -.+.+....+.|.=-+.-+.+.+.+. .+|+.|-++.+-.
T Consensus 3 ~~ilvlGGT~Dar~la~~L~~~~~~~~~ss~t-~-~g~~l~~~~~~~~~~G~l~~e~l~~~l~e~-~i~llIDATHPyAa 79 (257)
T COG2099 3 MRILLLGGTSDARALAKKLAAAPVDIILSSLT-G-YGAKLAEQIGPVRVGGFLGAEGLAAFLREE-GIDLLIDATHPYAA 79 (257)
T ss_pred ceEEEEeccHHHHHHHHHhhccCccEEEEEcc-c-ccccchhccCCeeecCcCCHHHHHHHHHHc-CCCEEEECCChHHH
Confidence 578888886654 777777765 33321111 1 110 11111112333444444555555555 5999999887632
Q ss_pred -hHHHHHHHhhCCCCcEEEEecCCCCH---H-----HHHHHHHHHHhCCCeeE
Q 007482 85 -AAASSMAALKQPTIRVVAIIAEGVPE---A-----DTKQLIAYARSNNKVVI 128 (602)
Q Consensus 85 -~~~~~~e~~~~~gv~~~viis~Gf~E---~-----~~~~l~~~a~~~g~rii 128 (602)
.-..++++|++.||+.+..-=.+... . +.++..+.+++.+-||+
T Consensus 80 ~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~~~~~rVf 132 (257)
T COG2099 80 RISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAAKQLGRRVF 132 (257)
T ss_pred HHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHHhccCCcEE
Confidence 22578999999999988765444433 1 67888888888876653
No 255
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=56.95 E-value=29 Score=31.00 Aligned_cols=35 Identities=14% Similarity=0.085 Sum_probs=24.3
Q ss_pred CccEEEEecCChhhHHHHHHHhhCCCCcEEEEecCCC
Q 007482 72 MADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGV 108 (602)
Q Consensus 72 ~vDlavi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf 108 (602)
++|+++.|+|... .....+.+.++|++ +|=.|+-|
T Consensus 66 ~~Dvvf~a~~~~~-~~~~~~~~~~~g~~-ViD~s~~~ 100 (121)
T PF01118_consen 66 DVDVVFLALPHGA-SKELAPKLLKAGIK-VIDLSGDF 100 (121)
T ss_dssp TESEEEE-SCHHH-HHHHHHHHHHTTSE-EEESSSTT
T ss_pred cCCEEEecCchhH-HHHHHHHHhhCCcE-EEeCCHHH
Confidence 5899999999864 56667777778883 44455555
No 256
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=55.92 E-value=82 Score=33.90 Aligned_cols=59 Identities=8% Similarity=0.045 Sum_probs=36.0
Q ss_pred CccEEEEecCChhhHHHHHHHhhCCCCcEEEEecCCC----------CHHHHHHHHHHHH---hCCCeeEcCCcc
Q 007482 72 MADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGV----------PEADTKQLIAYAR---SNNKVVIGPATV 133 (602)
Q Consensus 72 ~vDlavi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf----------~E~~~~~l~~~a~---~~g~riiGPNc~ 133 (602)
++|+++.++|... .......+.++|++ +|=.|+-| ||---+.|.. ++ +.+-.|-.|||.
T Consensus 69 ~~D~vf~a~p~~~-s~~~~~~~~~~g~~-VIDlS~~fR~~~~~p~~vPEvn~~~i~~-~~~~~~~~~iIanPgC~ 140 (344)
T PLN02383 69 GVDIALFSAGGSI-SKKFGPIAVDKGAV-VVDNSSAFRMEEGVPLVIPEVNPEAMKH-IKLGKGKGALIANPNCS 140 (344)
T ss_pred CCCEEEECCCcHH-HHHHHHHHHhCCCE-EEECCchhhcCCCCceECCCcCHHHHHh-hhhcccCCcEEECCCcH
Confidence 4899999998864 45556656556764 44456545 3332334443 33 224479999995
No 257
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=55.91 E-value=13 Score=32.95 Aligned_cols=73 Identities=18% Similarity=0.077 Sum_probs=47.4
Q ss_pred eecccccCCHHHHhhcCCCccEEEEecCChhhHHHHHHHhhCCCCcEEEEecCCCC-HHHHHHHHHHHHhCCCeeE
Q 007482 54 EIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVP-EADTKQLIAYARSNNKVVI 128 (602)
Q Consensus 54 v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~-E~~~~~l~~~a~~~g~rii 128 (602)
..+...+.++.++.... ++|++|=+.+... +....+.+-++|+..+..=-..++ +...++|.+.|+++|.++.
T Consensus 42 ~~~~~~~~~~~~~~~~~-~~dvvVE~t~~~~-~~~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~ 115 (117)
T PF03447_consen 42 FPDEAFTTDLEELIDDP-DIDVVVECTSSEA-VAEYYEKALERGKHVVTANKGALADEALYEELREAARKNGVRIY 115 (117)
T ss_dssp HTHSCEESSHHHHHTHT-T-SEEEE-SSCHH-HHHHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEE
T ss_pred cccccccCCHHHHhcCc-CCCEEEECCCchH-HHHHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEE
Confidence 34567888999987643 4899999977764 555555565588874332222333 3467899999999998864
No 258
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=55.35 E-value=24 Score=37.02 Aligned_cols=114 Identities=9% Similarity=0.071 Sum_probs=58.6
Q ss_pred CCCCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEe-CCCCCCccccccCceeecccc--cCCHHHHhhcCCCccEEEEecC
Q 007482 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCVAGII-NPGAEGFQKLFFGQEEIAIPV--HSTVEAACAAHPMADVFINFSS 81 (602)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~-~p~~~~~~~~~~g~~v~G~~~--y~sv~~i~~~~p~vDlavi~vp 81 (602)
+.++++.|+| |..|+ .++.+...|.++ ...+ .|.+..+. +-.|.+. |.++.+... +.|++|.++|
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~Ga~V-~v~~r~~~~~~~~------~~~G~~~~~~~~l~~~l~---~aDiVI~t~p 219 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGANV-TVGARKSAHLARI------TEMGLSPFHLSELAEEVG---KIDIIFNTIP 219 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCEE-EEEECCHHHHHHH------HHcCCeeecHHHHHHHhC---CCCEEEECCC
Confidence 3566777775 33344 667777788764 2332 12111011 1123332 334555443 5899999998
Q ss_pred ChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcC-Cccccc
Q 007482 82 FRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGP-ATVGGI 136 (602)
Q Consensus 82 ~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGP-Nc~G~~ 136 (602)
........++.+. +|. .+|-+++.-...+ + +.++++|++++|+ |-.|.+
T Consensus 220 ~~~i~~~~l~~~~-~g~-vIIDla~~pggtd---~-~~a~~~Gv~~~~~~~lpg~v 269 (296)
T PRK08306 220 ALVLTKEVLSKMP-PEA-LIIDLASKPGGTD---F-EYAEKRGIKALLAPGLPGKV 269 (296)
T ss_pred hhhhhHHHHHcCC-CCc-EEEEEccCCCCcC---e-eehhhCCeEEEEECCCCccC
Confidence 7643344555554 332 2332444322222 2 4678899999884 433444
No 259
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=52.42 E-value=1.2e+02 Score=31.64 Aligned_cols=44 Identities=11% Similarity=0.262 Sum_probs=33.7
Q ss_pred HHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCe---eEcCC
Q 007482 86 AASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV---VIGPA 131 (602)
Q Consensus 86 ~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~r---iiGPN 131 (602)
++..++.|.+.||.++++. -.|.+..+++.+.|+++|+. ++=||
T Consensus 111 ie~F~~~~~~~GvdGlivp--DLP~ee~~~~~~~~~~~gi~~I~lvaPt 157 (265)
T COG0159 111 IEKFLRRAKEAGVDGLLVP--DLPPEESDELLKAAEKHGIDPIFLVAPT 157 (265)
T ss_pred HHHHHHHHHHcCCCEEEeC--CCChHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 5667889999999998874 46666677899999999974 44444
No 260
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=52.19 E-value=1.9e+02 Score=31.36 Aligned_cols=174 Identities=9% Similarity=0.052 Sum_probs=99.8
Q ss_pred hhHHHHHHHh-hCCCCcEEEEecCCCCHH---HHHHHHHHHH-hCCCeeEcCCcccccc-cCcccccc-cCCcccccccc
Q 007482 84 SAAASSMAAL-KQPTIRVVAIIAEGVPEA---DTKQLIAYAR-SNNKVVIGPATVGGIQ-AGAFKIGD-TAGTIDNIIHC 156 (602)
Q Consensus 84 ~~~~~~~e~~-~~~gv~~~viis~Gf~E~---~~~~l~~~a~-~~g~riiGPNc~G~~~-~~~~~l~~-~~~~~~~~~p~ 156 (602)
..+..+++++ .+...+.++|+++..+|. |.+.+.+.++ +.+++|+--+|-|+.. ....+... ..+.+....+.
T Consensus 73 ~~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~~~~vi~v~t~gf~g~~~~~G~~~a~~al~~~l~~~ 152 (406)
T cd01967 73 KKLKKAIKEAYERFPPKAIFVYSTCPTGLIGDDIEAVAKEASKELGIPVIPVNCEGFRGVSQSLGHHIANDAILDHLVGT 152 (406)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCchhhhccCHHHHHHHHHHhhCCCEEEEeCCCeeCCcccHHHHHHHHHHHHHhcCC
Confidence 3455555544 444688899999999998 5555554443 5789999999999976 22211100 00101111111
Q ss_pred ---cCCCCCcEEEEecCh--hHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcH
Q 007482 157 ---KLYRPGSVGFVSKSG--GMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDE 231 (602)
Q Consensus 157 ---~~~~~G~valvSQSG--~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~ 231 (602)
....++.|-++.-.- +=..++-..+.+.|+.+..+++-|.. + +-+.+-++.+.-++... ..+
T Consensus 153 ~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~~~~~~~~~~------~----~~i~~~~~A~~niv~~~---~~~ 219 (406)
T cd01967 153 KEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRVNATFTGDGT------V----DELRRAHRAKLNLVHCS---RSM 219 (406)
T ss_pred CCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEEEEEeCCCCC------H----HHHhhCccCCEEEEECh---HHH
Confidence 123577899887642 22366777777777777665543222 3 33456677775554332 234
Q ss_pred HHHHHHHHhcCCCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHHHHHHHcCC
Q 007482 232 YSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGA 291 (602)
Q Consensus 232 ~~f~~~~r~~~~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGv 291 (602)
...++.+++ +.+.|.+.. ..-| -.+|++.++.+.+..|.
T Consensus 220 ~~~a~~L~~-r~GiP~~~~----~p~G----------------~~~t~~~l~~l~~~lg~ 258 (406)
T cd01967 220 NYLAREMEE-RYGIPYMEV----NFYG----------------FEDTSESLRKIAKFFGD 258 (406)
T ss_pred HHHHHHHHH-hhCCCEEEe----cCCc----------------HHHHHHHHHHHHHHhCC
Confidence 556666654 368898642 2223 12345778888888886
No 261
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=51.71 E-value=40 Score=34.99 Aligned_cols=96 Identities=8% Similarity=-0.032 Sum_probs=49.0
Q ss_pred CcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccc-----------cc--cC-------ceeec-ccccCCHHHH
Q 007482 10 TTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQK-----------LF--FG-------QEEIA-IPVHSTVEAA 66 (602)
Q Consensus 10 ~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~-----------~~--~g-------~~v~G-~~~y~sv~~i 66 (602)
++|+||| |..|. +.+++...|++++ .++ +.... .+ .+ .| ....+ +.+..+.++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~-~~d-~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~- 80 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVW-LLD-SDPAA-LSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEE- 80 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEE-EEe-CCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHH-
Confidence 4688887 44454 8888888998863 333 32110 00 00 00 00112 233334443
Q ss_pred hhcCCCccEEEEecCChh-hHHHHHHHhhCC-CCcEEEE-ecCCCCHHH
Q 007482 67 CAAHPMADVFINFSSFRS-AAASSMAALKQP-TIRVVAI-IAEGVPEAD 112 (602)
Q Consensus 67 ~~~~p~vDlavi~vp~~~-~~~~~~e~~~~~-gv~~~vi-is~Gf~E~~ 112 (602)
.. +.|+++.+||... ....+++++.+. .-..+++ .+++++.+.
T Consensus 81 ~~---~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~ 126 (295)
T PLN02545 81 LR---DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITR 126 (295)
T ss_pred hC---CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH
Confidence 33 4799999999322 244555555532 1123443 578887543
No 262
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=51.63 E-value=2.4e+02 Score=31.24 Aligned_cols=134 Identities=16% Similarity=0.137 Sum_probs=79.5
Q ss_pred EEEecCCCCHHHHHHHHHHHHhCCCeeEcCCcccc--cccCcccccccCCcccccccc------------cCCCCCcEEE
Q 007482 101 VAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGG--IQAGAFKIGDTAGTIDNIIHC------------KLYRPGSVGF 166 (602)
Q Consensus 101 ~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc~G~--~~~~~~~l~~~~~~~~~~~p~------------~~~~~G~val 166 (602)
+.|+...-+ .....+..+++..++..|.|.+-.- -+... +-.|....|. ..+.--.|++
T Consensus 119 ~aiiGp~~S-~~~~ava~~~~~~~iP~Is~~ats~~ls~~~~------~p~~fRt~p~d~~~~~al~~l~~~~~W~~Vai 191 (472)
T cd06374 119 VGVIGPGSS-SVAIQVQNLLQLFNIPQIAYSATSIDLSDKTL------FKYFLRVVPSDTLQARAMLDIVKRYNWTYVSA 191 (472)
T ss_pred EEEECCCcc-hHHHHHHHHhhhhcccccccccCchhhccccc------CCceEEcCCChHHHHHHHHHHHHHCCCcEEEE
Confidence 334433333 3444567788999999998865321 11111 0011111111 1235578999
Q ss_pred EecChhHHHH----HHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhc-CCCccEEEEEEecCCCcHHHHHHHHHhc
Q 007482 167 VSKSGGMSNE----LYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNN-IPQVKMMVVLGELGGRDEYSLVEALKQG 241 (602)
Q Consensus 167 vSQSG~l~~~----~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~-Dp~t~~I~ly~E~g~~~~~~f~~~~r~~ 241 (602)
|.+....+.. +...+.+.|+-+......-... .+.++...|.-+.+ +|++++|++|.+ + .+.+.|++.+++.
T Consensus 192 i~~~~~yg~~~~~~~~~~~~~~gi~i~~~~~i~~~~-~~~d~~~~l~~lk~~~~da~vvv~~~~-~-~~~~~~l~~a~~~ 268 (472)
T cd06374 192 VHTEGNYGESGMEAFKELAAHEGLCIAHSDKIYSNA-GEQSFDRLLRKLRSRLPKARVVVCFCE-G-MTVRGLLMAMRRL 268 (472)
T ss_pred EEecchHHHHHHHHHHHHHHHCCeeEEEEEEecCCC-chHHHHHHHHHHHhcCCCcEEEEEEec-h-HHHHHHHHHHHHh
Confidence 9998776554 3345566676666554442211 14567778887776 799999999887 3 4567899998886
Q ss_pred CCC
Q 007482 242 KVN 244 (602)
Q Consensus 242 ~~~ 244 (602)
...
T Consensus 269 g~~ 271 (472)
T cd06374 269 GVG 271 (472)
T ss_pred cCC
Confidence 544
No 263
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=51.60 E-value=32 Score=31.78 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=36.1
Q ss_pred HHHHHHHhhCCCCcEEEEecCCCC----HH---HHHHHHHHHHhCC-CeeEcCCcc
Q 007482 86 AASSMAALKQPTIRVVAIIAEGVP----EA---DTKQLIAYARSNN-KVVIGPATV 133 (602)
Q Consensus 86 ~~~~~e~~~~~gv~~~viis~Gf~----E~---~~~~l~~~a~~~g-~riiGPNc~ 133 (602)
++++++.+.+.|++.++++.=||. |+ ...+..+.++++| ..+.=..|+
T Consensus 79 ~~~~l~~l~~~G~~~i~v~p~gF~~D~~Etl~di~~e~~~~~~~~G~~~~~rvp~l 134 (135)
T cd00419 79 TDDALEELAKEGVKNVVVVPIGFVSDHLETLYELDIEYRELAEEAGGENYRRVPCL 134 (135)
T ss_pred HHHHHHHHHHcCCCeEEEECCccccccHHHHHHHHHHHHHHHHHcCCceEEEcCCC
Confidence 678888888899999999999995 33 3467788888887 555544443
No 264
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=51.45 E-value=2.1e+02 Score=30.72 Aligned_cols=21 Identities=5% Similarity=0.033 Sum_probs=17.0
Q ss_pred HHHHHHhhCCCCcEEEEecCC
Q 007482 87 ASSMAALKQPTIRVVAIIAEG 107 (602)
Q Consensus 87 ~~~~e~~~~~gv~~~viis~G 107 (602)
..++++|.+.++|.+|.+|+.
T Consensus 118 ~nll~aa~~~~vk~~V~~SS~ 138 (370)
T PLN02695 118 FNMLEAARINGVKRFFYASSA 138 (370)
T ss_pred HHHHHHHHHhCCCEEEEeCch
Confidence 457898988899988888763
No 265
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=51.37 E-value=47 Score=30.00 Aligned_cols=88 Identities=14% Similarity=0.151 Sum_probs=55.8
Q ss_pred cEEEEecChhHHHHHHHHHHh-cCCceeEEeeccCCCCCCCCHHHH-------------HHHhhcCCCccEEEEEEecCC
Q 007482 163 SVGFVSKSGGMSNELYNTIAR-VTDGIYEGIAIGGDVFPGSTLSDH-------------ILRFNNIPQVKMMVVLGELGG 228 (602)
Q Consensus 163 ~valvSQSG~l~~~~~~~~~~-~g~G~s~~vs~Gn~~~~dv~~~d~-------------l~~l~~Dp~t~~I~ly~E~g~ 228 (602)
+|+++.-||-|+..+...+.+ .++-+..++...++...+-+..|+ ++-+.++++ + .++ +
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~D--V---vID--f 74 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEAD--V---VID--F 74 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-S--E---EEE--E
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCC--E---EEE--c
Confidence 488899999999999998887 788888888888832223333322 233333344 3 334 4
Q ss_pred CcHHHHHHHHHhcC-CCCCEEEEEeCcCcc
Q 007482 229 RDEYSLVEALKQGK-VNKPVVAWVSGTCAR 257 (602)
Q Consensus 229 ~~~~~f~~~~r~~~-~~KPVv~~k~Gr~~~ 257 (602)
..+....+.++.+. .++|+|+--+|-++.
T Consensus 75 T~p~~~~~~~~~~~~~g~~~ViGTTG~~~~ 104 (124)
T PF01113_consen 75 TNPDAVYDNLEYALKHGVPLVIGTTGFSDE 104 (124)
T ss_dssp S-HHHHHHHHHHHHHHT-EEEEE-SSSHHH
T ss_pred CChHHhHHHHHHHHhCCCCEEEECCCCCHH
Confidence 56666666666544 689999988776653
No 266
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=50.72 E-value=32 Score=35.54 Aligned_cols=96 Identities=19% Similarity=0.210 Sum_probs=76.3
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcH----HHHH
Q 007482 160 RPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDE----YSLV 235 (602)
Q Consensus 160 ~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~----~~f~ 235 (602)
-.|+|+-+-...+++++.++...-+|=--..|..+|+..- .-......+.+-.||.+|+|++-+=-|+-+= ....
T Consensus 281 mDGNIaClVNGAGLAMATmDiIkLnGGePANFLDvGGgV~-EdqV~~Af~ilTaDPkVk~iLvNiFGGIVNCAtIANGiv 359 (412)
T KOG1447|consen 281 MDGNIACLVNGAGLAMATMDIIKLNGGEPANFLDVGGGVK-EDQVYQAFKILTADPKVKAILVNIFGGIVNCATIANGIV 359 (412)
T ss_pred ccCceEEEEccchhhhheeeeEEecCCCCcceeeccCccc-HHHHHHHhhhhccCCceeEEEEehhcceehhHhHhhHHH
Confidence 5899999999999999999988888888899999998641 2223455667789999999999988455553 3566
Q ss_pred HHHHhcCCCCCEEEEEeCcCc
Q 007482 236 EALKQGKVNKPVVAWVSGTCA 256 (602)
Q Consensus 236 ~~~r~~~~~KPVv~~k~Gr~~ 256 (602)
+++|+...+.|.|+---|++-
T Consensus 360 ~A~~kl~LnVPlVVRLEGTNV 380 (412)
T KOG1447|consen 360 KACRKLELNVPLVVRLEGTNV 380 (412)
T ss_pred HHHHhhcCCCcEEEEEcCCCH
Confidence 788888889999998777664
No 267
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=50.16 E-value=33 Score=37.01 Aligned_cols=120 Identities=13% Similarity=0.069 Sum_probs=74.9
Q ss_pred CcEEEEe-e-CCcHHHHHHHhcCCeEEEEEeCCCCCCccccccCceeeccccc--CCHHHHhhcCCCccEEEEecCChhh
Q 007482 10 TTQALFY-N-YKQLPIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVH--STVEAACAAHPMADVFINFSSFRSA 85 (602)
Q Consensus 10 ~s~avv~-g-~~~~~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y--~sv~~i~~~~p~vDlavi~vp~~~~ 85 (602)
.-++++| + ++.+.+-|+.+.||.+ ..|-..-.++++|...+-.|.|++ .|++|......++-.+++.|-+...
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v---~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~p 83 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTV---CAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAP 83 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceE---EEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCc
Confidence 4566665 2 4445888999999985 123211124455655555666654 3788876653346788888888778
Q ss_pred HHHHHHHhhCCCCcEEEEecCCCCHH--HHHHHHHHHHhCCCeeEcCCcc
Q 007482 86 AASSMAALKQPTIRVVAIIAEGVPEA--DTKQLIAYARSNNKVVIGPATV 133 (602)
Q Consensus 86 ~~~~~e~~~~~gv~~~viis~Gf~E~--~~~~l~~~a~~~g~riiGPNc~ 133 (602)
++..++++...==|.=+||-.|=++- ..++..+ ..+.|+.++|..--
T Consensus 84 VD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~e-l~k~GilfvG~GVS 132 (487)
T KOG2653|consen 84 VDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRE-LAKKGILFVGSGVS 132 (487)
T ss_pred HHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHH-HHhcCcEEEecCcc
Confidence 89999887654344556666665442 3444443 34578999987543
No 268
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=50.01 E-value=99 Score=31.46 Aligned_cols=88 Identities=3% Similarity=-0.120 Sum_probs=46.9
Q ss_pred EEEEeeCCcH----HHHHHHhcCCeEEEEEeCCCCCCccccccCceeeccc-ccCC---HHHHhh---cCCC-ccEEEEe
Q 007482 12 QALFYNYKQL----PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIP-VHST---VEAACA---AHPM-ADVFINF 79 (602)
Q Consensus 12 ~avv~g~~~~----~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~-~y~s---v~~i~~---~~p~-vDlavi~ 79 (602)
+.|+| .+|. ++++|++.|+++...+-.|.+.. ..+ +..++ -|.+ +.++.. .... +|.++.+
T Consensus 2 ilVtG-atG~iG~~vv~~L~~~g~~V~~~~R~~~~~~----~~~--~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~ 74 (285)
T TIGR03649 2 ILLTG-GTGKTASRIARLLQAASVPFLVASRSSSSSA----GPN--EKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLV 74 (285)
T ss_pred EEEEc-CCChHHHHHHHHHHhCCCcEEEEeCCCcccc----CCC--CccccccCCCHHHHHHHHhcccCcCCceeEEEEe
Confidence 55554 4443 78888888998744443232211 011 11111 2233 223221 0012 7888766
Q ss_pred cCCh----hhHHHHHHHhhCCCCcEEEEecC
Q 007482 80 SSFR----SAAASSMAALKQPTIRVVAIIAE 106 (602)
Q Consensus 80 vp~~----~~~~~~~e~~~~~gv~~~viis~ 106 (602)
.|.. .....++++|.+.|||.+|.+|+
T Consensus 75 ~~~~~~~~~~~~~~i~aa~~~gv~~~V~~Ss 105 (285)
T TIGR03649 75 APPIPDLAPPMIKFIDFARSKGVRRFVLLSA 105 (285)
T ss_pred CCCCCChhHHHHHHHHHHHHcCCCEEEEeec
Confidence 6531 12346788888899999888875
No 269
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=49.60 E-value=1.1e+02 Score=32.70 Aligned_cols=110 Identities=15% Similarity=0.031 Sum_probs=61.5
Q ss_pred CCcH-HHHHHHhcCCeEEEEEeCCCCCC----ccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhHHHHHHH
Q 007482 18 YKQL-PIQRMLDFDFLCVAGIINPGAEG----FQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAA 92 (602)
Q Consensus 18 ~~~~-~~~~~~~~g~~~V~gv~~p~~~~----~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~~e~ 92 (602)
.+|+ +.++|++.||+++ ..+ +++.. +.+.+ .-.|.+...|..|+.. +.|++++++|....+.++++.
T Consensus 30 ~gGspMArnLlkAGheV~-V~D-rnrsa~e~e~~e~L---aeaGA~~AaS~aEAAa---~ADVVIL~LPd~aaV~eVl~G 101 (341)
T TIGR01724 30 YGGSRMAIEFAMAGHDVV-LAE-PNREFMSDDLWKKV---EDAGVKVVSDDKEAAK---HGEIHVLFTPFGKGTFSIART 101 (341)
T ss_pred CCHHHHHHHHHHCCCEEE-EEe-CChhhhhhhhhHHH---HHCCCeecCCHHHHHh---CCCEEEEecCCHHHHHHHHHH
Confidence 4444 8889999999862 332 22210 00011 1247788899999865 479999999998767777654
Q ss_pred hhC-CCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCcccccccCc
Q 007482 93 LKQ-PTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGA 140 (602)
Q Consensus 93 ~~~-~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc~G~~~~~~ 140 (602)
+.. ..-..++|-++=.+.....++.+-- +| +|+.-+|+.+.|.
T Consensus 102 Laa~L~~GaIVID~STIsP~t~~~~~e~~----l~-~~r~d~~v~s~HP 145 (341)
T TIGR01724 102 IIEHVPENAVICNTCTVSPVVLYYSLEKI----LR-LKRTDVGISSMHP 145 (341)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHH----hh-cCccccCeeccCC
Confidence 332 1223456656555544322222211 11 2355566665554
No 270
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=49.57 E-value=98 Score=33.87 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=44.6
Q ss_pred ccccCCHHHHhhcCCCccEEEEecCC-----hhhH-HHHHHHhhCCCCcEEEEecC----C--CCHHHHHHHHHHHHhCC
Q 007482 57 IPVHSTVEAACAAHPMADVFINFSSF-----RSAA-ASSMAALKQPTIRVVAIIAE----G--VPEADTKQLIAYARSNN 124 (602)
Q Consensus 57 ~~~y~sv~~i~~~~p~vDlavi~vp~-----~~~~-~~~~e~~~~~gv~~~viis~----G--f~E~~~~~l~~~a~~~g 124 (602)
-|.|++....+.- ....++.+|- .... .+.+++......|.+++.+- | ++++..++|+++|++++
T Consensus 120 ~P~Y~~y~~~~~~---~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~ 196 (393)
T COG0436 120 DPGYPSYEAAVKL---AGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHD 196 (393)
T ss_pred CCCCcCHHHHHHh---cCCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcC
Confidence 3566666665432 2444555552 1111 23455555468997777653 3 45668899999999999
Q ss_pred CeeEcCCc
Q 007482 125 KVVIGPAT 132 (602)
Q Consensus 125 ~riiGPNc 132 (602)
+.|+==.+
T Consensus 197 i~ii~DEi 204 (393)
T COG0436 197 IIIISDEI 204 (393)
T ss_pred eEEEEehh
Confidence 98874443
No 271
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=49.48 E-value=1.2e+02 Score=26.90 Aligned_cols=44 Identities=14% Similarity=0.265 Sum_probs=28.2
Q ss_pred hHHHHHHHhhCCCCcEEEEecC-CC-CHHHHHHHHHHHHhCCCeeEcCCc
Q 007482 85 AAASSMAALKQPTIRVVAIIAE-GV-PEADTKQLIAYARSNNKVVIGPAT 132 (602)
Q Consensus 85 ~~~~~~e~~~~~gv~~~viis~-Gf-~E~~~~~l~~~a~~~g~riiGPNc 132 (602)
..+.+++.+.+.|+-. +..+ || +| -.++.+.+.++|+.++||+.
T Consensus 62 ~~e~I~~ia~~~g~~~--i~pGyg~lse--~~~fa~~~~~~gi~fiGp~~ 107 (110)
T PF00289_consen 62 NIEAIIDIARKEGADA--IHPGYGFLSE--NAEFAEACEDAGIIFIGPSP 107 (110)
T ss_dssp SHHHHHHHHHHTTESE--EESTSSTTTT--HHHHHHHHHHTT-EESSS-H
T ss_pred cHHHHhhHhhhhcCcc--cccccchhHH--HHHHHHHHHHCCCEEECcCh
Confidence 4678888888776543 2222 33 33 34567777799999999973
No 272
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=49.45 E-value=2.1e+02 Score=27.66 Aligned_cols=80 Identities=5% Similarity=-0.052 Sum_probs=45.0
Q ss_pred CCCcEEEEecChh--HH----HHHHHHHHhcCCce--eEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcH
Q 007482 160 RPGSVGFVSKSGG--MS----NELYNTIARVTDGI--YEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDE 231 (602)
Q Consensus 160 ~~G~valvSQSG~--l~----~~~~~~~~~~g~G~--s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~ 231 (602)
..++|++++.+.. .. ..+.+.+.+.++-+ ...+...... +.....+.+++...|+.++|+..-. ...
T Consensus 115 g~~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~i~~~~~---~~a 189 (264)
T cd06267 115 GHRRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIVEGDFSE--ESGYEAARELLASGERPTAIFAAND---LMA 189 (264)
T ss_pred CCceEEEecCCCccchHHHHHHHHHHHHHHcCCCCCcceEEecccch--hhHHHHHHHHHhcCCCCcEEEEcCc---HHH
Confidence 3568888876544 11 22334555555322 2333333333 4445566678888888887766533 344
Q ss_pred HHHHHHHHhcCCC
Q 007482 232 YSLVEALKQGKVN 244 (602)
Q Consensus 232 ~~f~~~~r~~~~~ 244 (602)
..+++++++...+
T Consensus 190 ~~~~~al~~~g~~ 202 (264)
T cd06267 190 IGALRALRELGLR 202 (264)
T ss_pred HHHHHHHHHhCCC
Confidence 5677777775443
No 273
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=48.98 E-value=49 Score=36.46 Aligned_cols=110 Identities=11% Similarity=0.091 Sum_probs=58.2
Q ss_pred CCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeeccccc-CCHHHHhh------------cCCCc
Q 007482 9 KTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVH-STVEAACA------------AHPMA 73 (602)
Q Consensus 9 p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y-~sv~~i~~------------~~p~v 73 (602)
.++|+||| |..|. ...+|.+.|++++ +++ ..... .+.+. -...|.| +.++++.. ...+.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~-~~D-~~~~~-v~~l~---~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~a 76 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVI-GVD-INQHA-VDTIN---RGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPA 76 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEE-EEe-CCHHH-HHHHH---CCCCCcCCCCHHHHHHHHhhcCceeeecccccC
Confidence 36789997 54444 7778888899863 554 31110 01000 0011111 11222110 00037
Q ss_pred cEEEEecCCh---------hhHHHHHHHhhC-CCCcEEEEecCCCCHHHHHHHHHHHHhCC
Q 007482 74 DVFINFSSFR---------SAAASSMAALKQ-PTIRVVAIIAEGVPEADTKQLIAYARSNN 124 (602)
Q Consensus 74 Dlavi~vp~~---------~~~~~~~e~~~~-~gv~~~viis~Gf~E~~~~~l~~~a~~~g 124 (602)
|+++++||.+ ..+..+.+.+.+ ..-..+||+.|.++....+++....++.+
T Consensus 77 Dvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~ 137 (415)
T PRK11064 77 DAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEAR 137 (415)
T ss_pred CEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 9999999985 345566666553 12245777777766656666666666554
No 274
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=48.61 E-value=13 Score=38.60 Aligned_cols=53 Identities=11% Similarity=0.072 Sum_probs=29.9
Q ss_pred ccccCCHHHHhhcCCCccEEEEecCChhhH-HHHHHHhhCCCC-cEEE-EecCCCCHHH
Q 007482 57 IPVHSTVEAACAAHPMADVFINFSSFRSAA-ASSMAALKQPTI-RVVA-IIAEGVPEAD 112 (602)
Q Consensus 57 ~~~y~sv~~i~~~~p~vDlavi~vp~~~~~-~~~~e~~~~~gv-~~~v-iis~Gf~E~~ 112 (602)
+....++++... +.|+++.++|....+ ..++.++.+.-- ..++ +-+|.++.+.
T Consensus 69 i~~~~~~~~~~~---~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~ 124 (288)
T PRK09260 69 LSYSLDLKAAVA---DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTE 124 (288)
T ss_pred eEEeCcHHHhhc---CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH
Confidence 344567766554 479999999987533 234444432111 2233 4567777643
No 275
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=48.56 E-value=9.9 Score=40.11 Aligned_cols=188 Identities=17% Similarity=0.135 Sum_probs=85.9
Q ss_pred ccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhh------HHHHHHHhhCCCCcEEEEecCCCCHH--HHHHH
Q 007482 45 FQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSA------AASSMAALKQPTIRVVAIIAEGVPEA--DTKQL 116 (602)
Q Consensus 45 ~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~------~~~~~e~~~~~gv~~~viis~Gf~E~--~~~~l 116 (602)
+.+++.+.. .|+|.|.|++++ .. .+|..|+-+.+..- .+.+.+++. +|.. | -+|+-+. +-.++
T Consensus 9 ~a~e~~~~~-~~iPi~~~~~~a-~~--~~~~liiGiA~~GG~lp~~w~~~i~~Ai~-~Gl~---I-vsGLH~~L~ddpel 79 (301)
T PF07755_consen 9 DAGEVLGGK-RGIPIVASLEEA-AA--GADTLIIGIAPAGGRLPPSWRPVILEAIE-AGLD---I-VSGLHDFLSDDPEL 79 (301)
T ss_dssp BHHHCCSSS-S--BEESSHHHH-HC--T-SEEEE---STTHCCHCCHHHHHHHHHH-TT-E---E-EE-SSS-HCCHHHH
T ss_pred cHHHhcCCC-CCCCccCCHHHH-hc--CCCEEEEecCcCCCcCCHHHHHHHHHHHH-cCCC---E-EecChhhhccCHHH
Confidence 455666655 999999999998 33 47999987654321 245666665 7876 2 2455444 45889
Q ss_pred HHHHHhCCCeeEcCCcccccccCcccccccCCcccccccccCCCCCcEEEEec---ChhHHHH--HHHHHHhcCCceeEE
Q 007482 117 IAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSK---SGGMSNE--LYNTIARVTDGIYEG 191 (602)
Q Consensus 117 ~~~a~~~g~riiGPNc~G~~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQ---SG~l~~~--~~~~~~~~g~G~s~~ 191 (602)
.+.|+++|.+++=-... +....+ ++ ... .....=.|.++.. .|=+.++ +...++++|+-. .|
T Consensus 80 ~~~A~~~g~~i~DvR~p----~~~~~~------~~-g~~-~~~~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a-~f 146 (301)
T PF07755_consen 80 AAAAKKNGVRIIDVRKP----PKDLPV------AS-GRI-REVKAKRVLTVGTDCAVGKMTTALELRRALRERGINA-GF 146 (301)
T ss_dssp HCCHHCCT--EEETTS------SS------------SGG-GG-SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--E-EE
T ss_pred HHHHHHcCCeEeeccCC----Cccccc------cc-Ccc-ccCCCCEEEEEccCccccHHHHHHHHHHHHHHcCCCc-eE
Confidence 99999999877643322 000011 10 001 1112334666654 4545444 456778888874 45
Q ss_pred eeccCCC--------CCCCC--------HHHHHHHhhcCCCccEEEEEEecCCCcHH--H-HHHHHHhcCCCCCEEEEEe
Q 007482 192 IAIGGDV--------FPGST--------LSDHILRFNNIPQVKMMVVLGELGGRDEY--S-LVEALKQGKVNKPVVAWVS 252 (602)
Q Consensus 192 vs~Gn~~--------~~dv~--------~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~--~-f~~~~r~~~~~KPVv~~k~ 252 (602)
++||-.. ..|-- ...++....+ ++ ..|++-..-++.+|- - =+..++-..-..=|++..+
T Consensus 147 vaTGQTGimia~~Gv~iDav~~DFvaGavE~~v~~~~~-~~-d~ivVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL~H~p 224 (301)
T PF07755_consen 147 VATGQTGIMIAGYGVPIDAVPSDFVAGAVEALVPEAAE-EH-DWIVVEGQGSLSHPAYSGVSLGLLHGSQPDALVLCHAP 224 (301)
T ss_dssp EE-SHHHHHCHSEC--GGGSBGGGHHHHHHHHHHHHCC-C--SEEEEE--S-TTSTTTHHCHHHHHHHH--SEEEEEEET
T ss_pred EecCCceEEEecCCeeccchhhhhHHHHHHHHHHhhCc-CC-CEEEEeccccccCccccccchhhhccCCCCeEEEEecC
Confidence 6776531 00111 1223333333 44 777777774445532 1 2223333223444555555
Q ss_pred CcCc
Q 007482 253 GTCA 256 (602)
Q Consensus 253 Gr~~ 256 (602)
||..
T Consensus 225 ~r~~ 228 (301)
T PF07755_consen 225 GRKH 228 (301)
T ss_dssp T-SC
T ss_pred Cccc
Confidence 5554
No 276
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=48.41 E-value=76 Score=33.78 Aligned_cols=35 Identities=26% Similarity=0.211 Sum_probs=24.1
Q ss_pred CccEEEEecCChhhHHHHHHHhhCCCCcEEEEecCCC
Q 007482 72 MADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGV 108 (602)
Q Consensus 72 ~vDlavi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf 108 (602)
++|+++.++|... ......++.++|++ +|=.|+-|
T Consensus 50 ~~DvvFlalp~~~-s~~~~~~~~~~g~~-VIDlSadf 84 (313)
T PRK11863 50 AADVAILCLPDDA-AREAVALIDNPATR-VIDASTAH 84 (313)
T ss_pred CCCEEEECCCHHH-HHHHHHHHHhCCCE-EEECChhh
Confidence 4899999999864 45566666657775 44456544
No 277
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=48.39 E-value=53 Score=33.34 Aligned_cols=83 Identities=14% Similarity=0.228 Sum_probs=44.4
Q ss_pred HHHHHHhhcCCCccEEEEEEecCC-----Cc------------HHHHHHHHHhcC-CCCCEEEEEeCcCccCcccccccc
Q 007482 205 SDHILRFNNIPQVKMMVVLGELGG-----RD------------EYSLVEALKQGK-VNKPVVAWVSGTCARLFKSEVQFG 266 (602)
Q Consensus 205 ~d~l~~l~~Dp~t~~I~ly~E~g~-----~~------------~~~f~~~~r~~~-~~KPVv~~k~Gr~~~g~~~~aa~s 266 (602)
.+.++.+..||++|+|++-.+ |- .| .+.|.+..++.. ..||||+..-|..-.| +-.-+..
T Consensus 33 ~~a~~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg-G~~lal~ 110 (248)
T PRK06072 33 ISKLKQINADPKIRVVIVTGE-GRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDKIYISAINGVTAGA-CIGIALS 110 (248)
T ss_pred HHHHHHHhcCCCeeEEEEECC-CCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehH-HHHHHHh
Confidence 345555556666666666655 31 01 112223333333 6899999999977543 2334444
Q ss_pred ccCCcCCCCcchHHHHHHHHHHcCCcc
Q 007482 267 HAGAKSGGEMESAQAKNQALRDAGAVV 293 (602)
Q Consensus 267 Htgalag~~~~~a~~~~a~~~qaGvi~ 293 (602)
.-=.++.++ ..|.--+-+.|+..
T Consensus 111 cD~~ia~~~----a~f~~~~~~~Gl~p 133 (248)
T PRK06072 111 TDFKFASRD----VKFVTAFQRLGLAS 133 (248)
T ss_pred CCEEEEcCC----CEEecchhhcCcCC
Confidence 434455555 33444455678874
No 278
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=48.13 E-value=40 Score=37.16 Aligned_cols=31 Identities=16% Similarity=-0.031 Sum_probs=21.6
Q ss_pred CCCCCcEEEEeeCCcH----HHHHHHhcCCeEEEEE
Q 007482 6 LFSKTTQALFYNYKQL----PIQRMLDFDFLCVAGI 37 (602)
Q Consensus 6 l~~p~s~avv~g~~~~----~~~~~~~~g~~~V~gv 37 (602)
-.+|.+|.|+| ++|+ +++.|++.||..-++|
T Consensus 76 ~~~~~~VlVvG-atG~vG~~iv~~llkrgf~vra~V 110 (411)
T KOG1203|consen 76 SKKPTTVLVVG-ATGKVGRRIVKILLKRGFSVRALV 110 (411)
T ss_pred CCCCCeEEEec-CCCchhHHHHHHHHHCCCeeeeec
Confidence 35677888885 4443 8899999999754444
No 279
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=48.06 E-value=2.4e+02 Score=31.11 Aligned_cols=181 Identities=14% Similarity=0.091 Sum_probs=102.2
Q ss_pred ecCChhhHHHHHHHhhCCCCcEEEEecCCCCHH---HHHHHHHHHHhCCCeeEcCCcccccccCcccccc-cCCcccccc
Q 007482 79 FSSFRSAAASSMAALKQPTIRVVAIIAEGVPEA---DTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGD-TAGTIDNII 154 (602)
Q Consensus 79 ~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~---~~~~l~~~a~~~g~riiGPNc~G~~~~~~~~l~~-~~~~~~~~~ 154 (602)
+=.......++.+.+.+...+.++|+++..+|. |.+.+++.+++.++.|+-=||-|+-.....+... +.+.+....
T Consensus 68 ~Gg~~kL~~~I~~~~~~~~p~~I~V~ttC~~~~IGdDi~~v~~~~~~~~~~vi~v~t~gf~g~~~~G~~~a~~al~~~~~ 147 (427)
T cd01971 68 FGGEDRLRELIKSTLSIIDADLFVVLTGCIAEIIGDDVGAVVSEFQEGGAPIVYLETGGFKGNNYAGHEIVLKAIIDQYV 147 (427)
T ss_pred eCCHHHHHHHHHHHHHhCCCCEEEEEcCCcHHHhhcCHHHHHHHhhhcCCCEEEEECCCcCcccccHHHHHHHHHHHHhc
Confidence 333333334444445545688999999999998 5566655557788999999999987644311100 001111111
Q ss_pred ccc-CCCCCcEEEEecC----h---hHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEec
Q 007482 155 HCK-LYRPGSVGFVSKS----G---GMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGEL 226 (602)
Q Consensus 155 p~~-~~~~G~valvSQS----G---~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~ 226 (602)
+.. ...++.|-++.-+ . +=..++-..+.+.|+-+..+.+.+ .++ +-+.+=++-+.-++...
T Consensus 148 ~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~~~~~------~~~----~ei~~~~~A~~niv~~~- 216 (427)
T cd01971 148 GQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNILFGPE------SNG----EELRSIPKAQFNLVLSP- 216 (427)
T ss_pred cCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEEECCC------CCH----HHHHhcccCcEEEEEcH-
Confidence 211 1357889999632 1 223677778887777776665433 233 34445555555444333
Q ss_pred CCCcHHHHHHHHHhcCCCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHHHHHHHcCC
Q 007482 227 GGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGA 291 (602)
Q Consensus 227 g~~~~~~f~~~~r~~~~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGv 291 (602)
..+..+.+.+++ +.+.|.+..- ..+-| -.+|++-++++.+..|.
T Consensus 217 --~~g~~~a~~L~~-~~giP~i~~~--~~P~G----------------~~~t~~~l~~i~~~~g~ 260 (427)
T cd01971 217 --WVGLEFAQHLEE-KYGQPYIHSP--TLPIG----------------AKATAEFLRQVAKFAGI 260 (427)
T ss_pred --hhHHHHHHHHHH-HhCCceEecC--CCccC----------------HHHHHHHHHHHHHHhCC
Confidence 234566666665 3578877641 12223 12344777777777775
No 280
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=47.71 E-value=1.9e+02 Score=28.42 Aligned_cols=167 Identities=10% Similarity=0.064 Sum_probs=80.1
Q ss_pred cCCHHHHhhcCCCccEEEEecCChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCcc------
Q 007482 60 HSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATV------ 133 (602)
Q Consensus 60 y~sv~~i~~~~p~vDlavi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc~------ 133 (602)
+..+.+...+.+ .++.+............++.+..+++.++|+.+.-.. ...++.+++.|+.++-=+..
T Consensus 18 ~~~i~~~~~~~g-~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~----~~~~~~~~~~~ipvV~~~~~~~~~~~ 92 (266)
T cd06278 18 LEALSRALQARG-YQPLLINTDDDEDLDAALRQLLQYRVDGVIVTSGTLS----SELAEECRRNGIPVVLINRYVDGPGV 92 (266)
T ss_pred HHHHHHHHHHCC-CeEEEEcCCCCHHHHHHHHHHHHcCCCEEEEecCCCC----HHHHHHHhhcCCCEEEECCccCCCCC
Confidence 334455445443 6766655443222345666777789998888654322 12366677778775543321
Q ss_pred cccccCcccccccCCcccccccccCCCCCcEEEEecChhH------HHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHH
Q 007482 134 GGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGM------SNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDH 207 (602)
Q Consensus 134 G~~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQSG~l------~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~ 207 (602)
-.+.......+ ......+- .....+|++++.+-.. ...+.+.+.+.++-+...+..+.+. ......+
T Consensus 93 ~~v~~d~~~~g---~~~~~~l~--~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 165 (266)
T cd06278 93 DAVCSDNYEAG---RLAAELLL--AKGCRRIAFIGGPADTSTSRERERGFRDALAAAGVPVVVEEAGDYSY--EGGYEAA 165 (266)
T ss_pred CEEEEChHHHH---HHHHHHHH--HCCCceEEEEcCCCcccchHHHHHHHHHHHHHcCCChhhhccCCCCH--HHHHHHH
Confidence 00101100000 00000000 0134589999754321 1233445555665543322222222 2233455
Q ss_pred HHHhhcCCCccEEEEEEecCCCcHHHHHHHHHhc
Q 007482 208 ILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQG 241 (602)
Q Consensus 208 l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~ 241 (602)
.+++.+.|+.++|+..-+ .-....++++++.
T Consensus 166 ~~~l~~~~~~~~i~~~~~---~~a~~~~~~l~~~ 196 (266)
T cd06278 166 RRLLASRPRPDAIFCAND---LLAIGVMDAARQE 196 (266)
T ss_pred HHHHhcCCCCCEEEEcCc---HHHHHHHHHHHHh
Confidence 667766677776655433 3345677777763
No 281
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=47.66 E-value=3.3e+02 Score=27.90 Aligned_cols=18 Identities=6% Similarity=-0.057 Sum_probs=13.6
Q ss_pred HHHHHhhCCCCcEEEEecC
Q 007482 88 SSMAALKQPTIRVVAIIAE 106 (602)
Q Consensus 88 ~~~e~~~~~gv~~~viis~ 106 (602)
.++++|.+.+++ +|.+||
T Consensus 99 ~ll~~~~~~~~~-~i~~SS 116 (308)
T PRK11150 99 ELLHYCLEREIP-FLYASS 116 (308)
T ss_pred HHHHHHHHcCCc-EEEEcc
Confidence 578889988886 566665
No 282
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=47.60 E-value=27 Score=37.79 Aligned_cols=65 Identities=12% Similarity=0.043 Sum_probs=45.5
Q ss_pred ccccCCHHHHhhcCCCccEEEEecCChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeE
Q 007482 57 IPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVI 128 (602)
Q Consensus 57 ~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~rii 128 (602)
+.-..++.++.. +.|++|.++|+. .-..++++|.+.|++.+= ..+-...+.++.+.|+++|+.++
T Consensus 55 ~~~~~~l~~~~~---~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD---~~~~~~~~~~l~~~a~~~g~~~l 119 (386)
T PF03435_consen 55 VNDPESLAELLR---GCDVVINCAGPF-FGEPVARACIEAGVHYVD---TSYVTEEMLALDEEAKEAGVTAL 119 (386)
T ss_dssp TTTHHHHHHHHT---TSSEEEE-SSGG-GHHHHHHHHHHHT-EEEE---SS-HHHHHHHCHHHHHHTTSEEE
T ss_pred cCCHHHHHHHHh---cCCEEEECCccc-hhHHHHHHHHHhCCCeec---cchhHHHHHHHHHHHHhhCCEEE
Confidence 333445666655 469999999886 468899999999998655 33334467788889999998754
No 283
>PLN02494 adenosylhomocysteinase
Probab=47.33 E-value=49 Score=37.17 Aligned_cols=119 Identities=16% Similarity=0.094 Sum_probs=65.9
Q ss_pred CCCCCCCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecC
Q 007482 4 GQLFSKTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSS 81 (602)
Q Consensus 4 ~~l~~p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp 81 (602)
+.++.-++++|+| |..|+ ..+.+..+|.+++.--..|.+.- + ....|..+. ++.++.+ +.|+++.+..
T Consensus 249 ~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~-e-----A~~~G~~vv-~leEal~---~ADVVI~tTG 318 (477)
T PLN02494 249 DVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICAL-Q-----ALMEGYQVL-TLEDVVS---EADIFVTTTG 318 (477)
T ss_pred CCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhH-H-----HHhcCCeec-cHHHHHh---hCCEEEECCC
Confidence 4456667788776 45566 66677778888642211242210 0 112234433 5777665 4799988666
Q ss_pred ChhhH-HHHHHHhhCCCCcEEEEecCCC-CHHHHHHHHHHH--HhCCCeeEcCCccccccc
Q 007482 82 FRSAA-ASSMAALKQPTIRVVAIIAEGV-PEADTKQLIAYA--RSNNKVVIGPATVGGIQA 138 (602)
Q Consensus 82 ~~~~~-~~~~e~~~~~gv~~~viis~Gf-~E~~~~~l~~~a--~~~g~riiGPNc~G~~~~ 138 (602)
....+ ...++.+. -.++++..+.| .|-++..|.+.+ ++.. +.|+.--+-.+
T Consensus 319 t~~vI~~e~L~~MK---~GAiLiNvGr~~~eID~~aL~~~~~l~~~~---i~~~vd~y~~~ 373 (477)
T PLN02494 319 NKDIIMVDHMRKMK---NNAIVCNIGHFDNEIDMLGLETYPGVKRIT---IKPQTDRWVFP 373 (477)
T ss_pred CccchHHHHHhcCC---CCCEEEEcCCCCCccCHHHHhhccccceec---cCCCceEEEcC
Confidence 54432 44555544 34466666666 466888887763 2222 33665544444
No 284
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=47.17 E-value=45 Score=37.42 Aligned_cols=92 Identities=16% Similarity=0.308 Sum_probs=63.2
Q ss_pred EEEEEecCCCcHHHHHHHHHhcC--CCCCEEEEEeCcCccCccccccccc-cCCcCCCCcchHHHHHHHHH--HcCCccc
Q 007482 220 MVVLGELGGRDEYSLVEALKQGK--VNKPVVAWVSGTCARLFKSEVQFGH-AGAKSGGEMESAQAKNQALR--DAGAVVP 294 (602)
Q Consensus 220 I~ly~E~g~~~~~~f~~~~r~~~--~~KPVv~~k~Gr~~~g~~~~aa~sH-tgalag~~~~~a~~~~a~~~--qaGvi~v 294 (602)
|++.+| ++.-=+-+++++.+.+ ++||-|++-+|.-+..+=..--++| -||..|.. .-....|+ +-|-+.-
T Consensus 167 VLI~GE-SGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~----~~r~G~fE~A~GGTLfL 241 (464)
T COG2204 167 VLITGE-SGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAI----TRRIGRFEQANGGTLFL 241 (464)
T ss_pred EEEECC-CCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcc----cccCcceeEcCCceEEe
Confidence 889999 8877788888988876 6789999988877654322235777 45555554 44445554 4488999
Q ss_pred CCHHHHHHHHHHHHHhHhhcCC
Q 007482 295 TSYEAFESAIKETFEKLVEEGK 316 (602)
Q Consensus 295 ~~~~el~~~~~~~~~~~~~~g~ 316 (602)
|.+.||.--++.-+-+..+.|.
T Consensus 242 DEI~~mpl~~Q~kLLRvLqe~~ 263 (464)
T COG2204 242 DEIGEMPLELQVKLLRVLQERE 263 (464)
T ss_pred eccccCCHHHHHHHHHHHHcCe
Confidence 9999987777764444444443
No 285
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=47.15 E-value=33 Score=34.08 Aligned_cols=95 Identities=12% Similarity=-0.023 Sum_probs=49.4
Q ss_pred CcEEEEe--eCCcH-HHHHHHhcCCeEE-EEEeCCCCCCccccccCce--eeccc--c-cCCHHHHhhcCCCccEEEEec
Q 007482 10 TTQALFY--NYKQL-PIQRMLDFDFLCV-AGIINPGAEGFQKLFFGQE--EIAIP--V-HSTVEAACAAHPMADVFINFS 80 (602)
Q Consensus 10 ~s~avv~--g~~~~-~~~~~~~~g~~~V-~gv~~p~~~~~~~~~~g~~--v~G~~--~-y~sv~~i~~~~p~vDlavi~v 80 (602)
++++||| |..|. +.+.+.+.|++++ +..+ +.+-.+....+-+. ..|.. + ..+..++.. +.|++|++|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~-~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~---~aDvVilav 76 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD-LEKAEEAAAKALEELGHGGSDIKVTGADNAEAAK---RADVVILAV 76 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC-HHHHHHHHHHHHhhccccCCCceEEEeChHHHHh---cCCEEEEEC
Confidence 4688996 43344 7778888888763 2221 21110000000000 01211 1 124455544 479999999
Q ss_pred CChhhHHHHHHHhhC--CCCcEEEEecCCCCH
Q 007482 81 SFRSAAASSMAALKQ--PTIRVVAIIAEGVPE 110 (602)
Q Consensus 81 p~~~~~~~~~e~~~~--~gv~~~viis~Gf~E 110 (602)
|+.. ...+++.+.. .+ +.+|-++.|+..
T Consensus 77 p~~~-~~~~l~~l~~~l~~-~vvI~~~ngi~~ 106 (219)
T TIGR01915 77 PWDH-VLKTLESLRDELSG-KLVISPVVPLAS 106 (219)
T ss_pred CHHH-HHHHHHHHHHhccC-CEEEEeccCcee
Confidence 9875 6777776642 23 555556667753
No 286
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=46.92 E-value=34 Score=29.80 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=29.6
Q ss_pred cEEEEecCChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEc
Q 007482 74 DVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIG 129 (602)
Q Consensus 74 Dlavi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiG 129 (602)
+-.+| +|... .+++..+..++++.+| ++.|... .++++++|++.++.|+-
T Consensus 41 ~~lvI-t~gdR--~di~~~a~~~~i~~iI-ltg~~~~--~~~v~~la~~~~i~vi~ 90 (105)
T PF07085_consen 41 GDLVI-TPGDR--EDIQLAAIEAGIACII-LTGGLEP--SEEVLELAKELGIPVIS 90 (105)
T ss_dssp TEEEE-EETT---HHHHHHHCCTTECEEE-EETT------HHHHHHHHHHT-EEEE
T ss_pred CeEEE-EeCCc--HHHHHHHHHhCCCEEE-EeCCCCC--CHHHHHHHHHCCCEEEE
Confidence 44444 44443 4556666668987555 5777654 56789999999987654
No 287
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=46.35 E-value=49 Score=33.98 Aligned_cols=91 Identities=14% Similarity=0.067 Sum_probs=60.2
Q ss_pred HHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeE---------------cCCcccccccCcccccccCCcccc
Q 007482 88 SSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVI---------------GPATVGGIQAGAFKIGDTAGTIDN 152 (602)
Q Consensus 88 ~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~rii---------------GPNc~G~~~~~~~~l~~~~~~~~~ 152 (602)
.+.|+.. .|..+++++..-....+.+++.+.|++.|+-.+ |+.-+|+-|.+-..+ ......
T Consensus 116 QI~ea~~-~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~---~vd~~~ 191 (247)
T PRK13957 116 QIREARA-FGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTF---QIHQNL 191 (247)
T ss_pred HHHHHHH-cCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccc---eECHHH
Confidence 5666665 899999999998888788889999999998755 888888766543111 001110
Q ss_pred cccccCCCCCcEEEEecChhHHHHHHHHHH
Q 007482 153 IIHCKLYRPGSVGFVSKSGGMSNELYNTIA 182 (602)
Q Consensus 153 ~~p~~~~~~G~valvSQSG~l~~~~~~~~~ 182 (602)
.......-|.++-+||-||=-+.+=+..+.
T Consensus 192 ~~~L~~~ip~~~~~IsESGI~t~~d~~~l~ 221 (247)
T PRK13957 192 VEEVAAFLPPNIVKVGESGIESRSDLDKFR 221 (247)
T ss_pred HHHHHhhCCCCcEEEEcCCCCCHHHHHHHH
Confidence 000112346778899999977666444444
No 288
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=45.90 E-value=1.6e+02 Score=28.11 Aligned_cols=88 Identities=19% Similarity=0.160 Sum_probs=57.0
Q ss_pred EEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHhcC-
Q 007482 164 VGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGK- 242 (602)
Q Consensus 164 valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~- 242 (602)
+=+..-.|+++..+..++.+++ -.++|=+|-.....-...+.++.+.+. .. -+.|....+.|++.+.++..+..
T Consensus 3 ylitGG~gglg~~la~~La~~~--~~~~il~~r~~~~~~~~~~~i~~l~~~-g~--~v~~~~~Dv~d~~~v~~~~~~~~~ 77 (181)
T PF08659_consen 3 YLITGGLGGLGQSLARWLAERG--ARRLILLGRSGAPSAEAEAAIRELESA-GA--RVEYVQCDVTDPEAVAAALAQLRQ 77 (181)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---SEEEEEESSGGGSTTHHHHHHHHHHT-T---EEEEEE--TTSHHHHHHHHHTSHT
T ss_pred EEEECCccHHHHHHHHHHHHcC--CCEEEEeccCCCccHHHHHHHHHHHhC-CC--ceeeeccCccCHHHHHHHHHHHHh
Confidence 3445568999999999999887 667777777721245666888888886 33 44556656899999888888765
Q ss_pred CCCCE--EEEEeCcCc
Q 007482 243 VNKPV--VAWVSGTCA 256 (602)
Q Consensus 243 ~~KPV--v~~k~Gr~~ 256 (602)
...|| |+..+|...
T Consensus 78 ~~~~i~gVih~ag~~~ 93 (181)
T PF08659_consen 78 RFGPIDGVIHAAGVLA 93 (181)
T ss_dssp TSS-EEEEEE------
T ss_pred ccCCcceeeeeeeeec
Confidence 44688 777777654
No 289
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=45.76 E-value=76 Score=37.68 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=38.5
Q ss_pred CccEEEEecCChh---hHHHHHHHhhCCCCcEEEEecCCC-CHHHHHHHHHHHHhCCC-eeEcCCc
Q 007482 72 MADVFINFSSFRS---AAASSMAALKQPTIRVVAIIAEGV-PEADTKQLIAYARSNNK-VVIGPAT 132 (602)
Q Consensus 72 ~vDlavi~vp~~~---~~~~~~e~~~~~gv~~~viis~Gf-~E~~~~~l~~~a~~~g~-riiGPNc 132 (602)
++|+++||..... ..+.+++++.++|.+.+.++.+|. ++.+. +..++.|+ .++.|.|
T Consensus 633 ~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G~~~v~vl~GG~~~~~~~----~~l~~aGvD~~i~~g~ 694 (714)
T PRK09426 633 DVHVVGVSSLAAGHKTLVPALIEALKKLGREDIMVVVGGVIPPQDY----DFLYEAGVAAIFGPGT 694 (714)
T ss_pred CCCEEEEeccchhhHHHHHHHHHHHHhcCCCCcEEEEeCCCChhhH----HHHHhCCCCEEECCCC
Confidence 4899999864422 246788899999987776666676 54333 33566787 4777655
No 290
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=45.35 E-value=90 Score=30.85 Aligned_cols=80 Identities=18% Similarity=0.145 Sum_probs=41.7
Q ss_pred CCcEEEEecChhHHH------HHHHHHHhcCCceeEE---eeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcH
Q 007482 161 PGSVGFVSKSGGMSN------ELYNTIARVTDGIYEG---IAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDE 231 (602)
Q Consensus 161 ~G~valvSQSG~l~~------~~~~~~~~~g~G~s~~---vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~ 231 (602)
.|+|.+++-+-.... .+.+.+.+.+ ++... ..+.+.. ......+.++|..+| +.+|+..-+ ...
T Consensus 122 ~~~v~~~~~~~~~~~~~~r~~g~~~~l~~~~-~~~~~~~~~~~~~~~--~~a~~~~~~~l~~~~-~~~i~~~~~---~~~ 194 (257)
T PF13407_consen 122 KGKVLILSGSPGNPNTQERLEGFRDALKEYP-GVEIVDEYEYTDWDP--EDARQAIENLLQANP-VDAIIACND---GMA 194 (257)
T ss_dssp TEEEEEEESSTTSHHHHHHHHHHHHHHHHCT-TEEEEEEEEECTTSH--HHHHHHHHHHHHHTT-EEEEEESSH---HHH
T ss_pred CceEEeccCCCCchHHHHHHHHHHHHHhhcc-eeeeeeeeeccCCCH--HHHHHHHHHhhhcCC-ceEEEeCCC---hHH
Confidence 377777733322221 1233344433 44432 2345554 555666677777776 555543322 444
Q ss_pred HHHHHHHHhcC-CCCCE
Q 007482 232 YSLVEALKQGK-VNKPV 247 (602)
Q Consensus 232 ~~f~~~~r~~~-~~KPV 247 (602)
...++++++.- .+|+.
T Consensus 195 ~g~~~al~~~g~~~~~~ 211 (257)
T PF13407_consen 195 LGAAQALQQAGRAGKVI 211 (257)
T ss_dssp HHHHHHHHHTTCTTTSE
T ss_pred HHHHHHHHHcCCcccce
Confidence 56778888754 34553
No 291
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=45.16 E-value=3.2e+02 Score=27.01 Aligned_cols=169 Identities=9% Similarity=0.020 Sum_probs=82.3
Q ss_pred HHHHhhcCCCccEEEEecCCh-hhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCe--eEcCCcccc----
Q 007482 63 VEAACAAHPMADVFINFSSFR-SAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV--VIGPATVGG---- 135 (602)
Q Consensus 63 v~~i~~~~p~vDlavi~vp~~-~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~r--iiGPNc~G~---- 135 (602)
+.+...+. ..++.+...... ......++.+...++.++|+.+...... .++.+++.|+. +++-++-+.
T Consensus 21 ~~~~a~~~-g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgii~~~~~~~~~----~~~~~~~~~ipvV~~~~~~~~~~~~~ 95 (268)
T cd06270 21 VESVARKA-GKHLIITAGHHSAEKEREAIEFLLERRCDALILHSKALSDD----ELIELAAQVPPLVLINRHIPGLADRC 95 (268)
T ss_pred HHHHHHHC-CCEEEEEeCCCchHHHHHHHHHHHHcCCCEEEEecCCCCHH----HHHHHhhCCCCEEEEeccCCCCCCCe
Confidence 34434444 266665544322 1123567777678999999876544432 24555677765 344322111
Q ss_pred cccCcccccccCCcccccccccCCCCCcEEEEecChhH------HHHHHHHHHhcCCceeE-EeeccCCCCCCCCHHHHH
Q 007482 136 IQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGM------SNELYNTIARVTDGIYE-GIAIGGDVFPGSTLSDHI 208 (602)
Q Consensus 136 ~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQSG~l------~~~~~~~~~~~g~G~s~-~vs~Gn~~~~dv~~~d~l 208 (602)
+.......+ .. ....+- ....++|++++.+... ...+.+.+.++|+-+.. .+-.++.. .-+..+.+
T Consensus 96 v~~d~~~~~--~~-~~~~l~--~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 168 (268)
T cd06270 96 IWLDNEQGG--YL-ATEHLI--ELGHRKIACITGPLTKEDARLRLQGYRDALAEAGIALDESLIIEGDFT--EEGGYAAM 168 (268)
T ss_pred EEECcHHHH--HH-HHHHHH--HCCCceEEEEeCCcccccHHHHHHHHHHHHHHcCCCCCcceEEECCCC--HHHHHHHH
Confidence 111110000 00 000011 1145689999765322 22234556666655421 23233322 22334444
Q ss_pred H-HhhcCCCccEEEEEEecCCCcHHHHHHHHHhcCCCCC
Q 007482 209 L-RFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKP 246 (602)
Q Consensus 209 ~-~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~~~KP 246 (602)
+ ++...|+.++|+..-. .-...+++++++...++|
T Consensus 169 ~~~l~~~~~~~ai~~~~d---~~a~g~~~~l~~~g~~ip 204 (268)
T cd06270 169 QELLARGAPFTAVFCAND---EMAAGAISALREHGISVP 204 (268)
T ss_pred HHHHhCCCCCCEEEEcCc---HHHHHHHHHHHHcCCCCC
Confidence 4 4556677777765544 444678888887655555
No 292
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=45.05 E-value=79 Score=33.98 Aligned_cols=37 Identities=16% Similarity=0.022 Sum_probs=27.1
Q ss_pred CccEEEEecCChhhHHHHHHHhhCCCCcEEEEecCCCCH
Q 007482 72 MADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPE 110 (602)
Q Consensus 72 ~vDlavi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E 110 (602)
++|++++++|... ......++.++|. .+|=.|+.|.-
T Consensus 68 ~~DvVf~alP~~~-s~~~~~~~~~~G~-~VIDlS~~fR~ 104 (346)
T TIGR01850 68 DADVVFLALPHGV-SAELAPELLAAGV-KVIDLSADFRL 104 (346)
T ss_pred CCCEEEECCCchH-HHHHHHHHHhCCC-EEEeCChhhhc
Confidence 4899999999874 5666676766784 46667877753
No 293
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=44.97 E-value=37 Score=34.55 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=13.0
Q ss_pred CCCCEEEEEeCcCccC
Q 007482 243 VNKPVVAWVSGTCARL 258 (602)
Q Consensus 243 ~~KPVv~~k~Gr~~~g 258 (602)
..||||+..-|.+-.|
T Consensus 96 ~~kPvIAav~G~a~Gg 111 (251)
T PRK06023 96 AEKPIVSGVDGLAIGI 111 (251)
T ss_pred CCCCEEEEeCCceecH
Confidence 7899999998876644
No 294
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=44.75 E-value=1.2e+02 Score=31.34 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=30.5
Q ss_pred cccccCCHHHHhhcCCCccEEEEecCChh-hHHHHHHHhhCCC-CcEEE-EecCCCCHH
Q 007482 56 AIPVHSTVEAACAAHPMADVFINFSSFRS-AAASSMAALKQPT-IRVVA-IIAEGVPEA 111 (602)
Q Consensus 56 G~~~y~sv~~i~~~~p~vDlavi~vp~~~-~~~~~~e~~~~~g-v~~~v-iis~Gf~E~ 111 (602)
.+....+++++.. +.|++|.++|... ....+++++.+.- -+.++ .-+|.++..
T Consensus 71 ~i~~~~d~~~a~~---~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~ 126 (287)
T PRK08293 71 RITLTTDLAEAVK---DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPS 126 (287)
T ss_pred CeEEeCCHHHHhc---CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHH
Confidence 4445677777554 4799999999642 2455555555321 12233 345666543
No 295
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=44.50 E-value=91 Score=34.31 Aligned_cols=118 Identities=11% Similarity=0.081 Sum_probs=66.5
Q ss_pred CCcEEEEe-e-CCcHHHHHHHhcCCeEEEEEeCCCCCCccccccCcee---ecccccCCHHHHhhcCCCccEEEEecCCh
Q 007482 9 KTTQALFY-N-YKQLPIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEE---IAIPVHSTVEAACAAHPMADVFINFSSFR 83 (602)
Q Consensus 9 p~s~avv~-g-~~~~~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v---~G~~~y~sv~~i~~~~p~vDlavi~vp~~ 83 (602)
...+.||| | ++.+++.|+.+.||++ ...| -... +.++|.-+.- .=+|+| |++|......++--.++.|-+.
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~V-avyN-Rt~~-ktd~f~~~~~~~k~i~~~~-sieefV~~Le~PRkI~lMVkAG 78 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTV-AVYN-RTTE-KTDEFLAERAKGKNIVPAY-SIEEFVASLEKPRKILLMVKAG 78 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceE-EEEe-CCHH-HHHHHHHhCccCCCccccC-cHHHHHHHhcCCceEEEEEecC
Confidence 34677776 4 4444888999999985 1222 1111 1222222111 113444 7888776432456777777776
Q ss_pred hhHHHHHHHhhCCCCcEEEEecCC---CCHHHHHHHHHHHHhCCCeeEcCCc
Q 007482 84 SAAASSMAALKQPTIRVVAIIAEG---VPEADTKQLIAYARSNNKVVIGPAT 132 (602)
Q Consensus 84 ~~~~~~~e~~~~~gv~~~viis~G---f~E~~~~~l~~~a~~~g~riiGPNc 132 (602)
..++++++++.-.==|.=|||=.| |+. .+++ .+..++.|+.++|-.-
T Consensus 79 ~~VD~~I~~L~p~Le~gDIiIDGGNs~y~D-T~RR-~~eL~~~Gi~FvG~GV 128 (473)
T COG0362 79 TPVDAVIEQLLPLLEKGDIIIDGGNSHYKD-TIRR-NKELSEKGILFVGMGV 128 (473)
T ss_pred CcHHHHHHHHHhhcCCCCEEEeCCCcCCch-HHHH-HHHHHhcCCeEEeccc
Confidence 667888888764333455666554 443 2233 3334667999988643
No 296
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=43.98 E-value=63 Score=31.35 Aligned_cols=51 Identities=22% Similarity=0.264 Sum_probs=35.3
Q ss_pred HHHHHHHhhcCCCccEEEEEEe-cCCC--cHHHHHHHHHhcCCCCCEEEEEe---CcCcc
Q 007482 204 LSDHILRFNNIPQVKMMVVLGE-LGGR--DEYSLVEALKQGKVNKPVVAWVS---GTCAR 257 (602)
Q Consensus 204 ~~d~l~~l~~Dp~t~~I~ly~E-~g~~--~~~~f~~~~r~~~~~KPVv~~k~---Gr~~~ 257 (602)
+...|+.+.+|+ ++.|++++. +|+. ...++++.+++ ..||||++.- |....
T Consensus 18 l~~~l~~a~~~~-~~~vvl~InSpGG~v~~~~~i~~~l~~--~~kPvia~v~~~~G~Aas 74 (187)
T cd07020 18 LERAIDQAEEGG-ADALIIELDTPGGLLDSTREIVQAILA--SPVPVVVYVYPSGARAAS 74 (187)
T ss_pred HHHHHHHHHhCC-CCEEEEEEECCCCCHHHHHHHHHHHHh--CCCCEEEEEecCCCCchh
Confidence 567778887766 899999998 3332 24456666654 6899999986 65443
No 297
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=43.84 E-value=1.1e+02 Score=32.78 Aligned_cols=36 Identities=14% Similarity=-0.024 Sum_probs=26.3
Q ss_pred CccEEEEecCChhhHHHHHHHhhCCCCcEEEEecCCCC
Q 007482 72 MADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVP 109 (602)
Q Consensus 72 ~vDlavi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~ 109 (602)
++|+++.++|... .....+++.++|++ +|..|+-|.
T Consensus 73 ~~DvVf~a~p~~~-s~~~~~~~~~~G~~-VIDlsg~fR 108 (341)
T TIGR00978 73 DVDIVFSALPSEV-AEEVEPKLAEAGKP-VFSNASNHR 108 (341)
T ss_pred cCCEEEEeCCHHH-HHHHHHHHHHCCCE-EEECChhhc
Confidence 5899999999864 45566777668887 566676664
No 298
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=43.70 E-value=48 Score=33.20 Aligned_cols=78 Identities=19% Similarity=0.161 Sum_probs=45.0
Q ss_pred CcEEEEe-eCCcH-HHHHHHhcCCeEEEE-EeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhH
Q 007482 10 TTQALFY-NYKQL-PIQRMLDFDFLCVAG-IINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAA 86 (602)
Q Consensus 10 ~s~avv~-g~~~~-~~~~~~~~g~~~V~g-v~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~ 86 (602)
++++|+| |..|. ..+++...|++++-+ ...|....-...+.+..+.| .+..|+.. ..|++++.||-.. .
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~----~~~~dA~~---~aDVVvLAVP~~a-~ 73 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITG----GSNEDAAA---LADVVVLAVPFEA-I 73 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhcccccc----CChHHHHh---cCCEEEEeccHHH-H
Confidence 4556554 33333 778888899997434 44232111112222323222 24555544 3699999999875 7
Q ss_pred HHHHHHhhC
Q 007482 87 ASSMAALKQ 95 (602)
Q Consensus 87 ~~~~e~~~~ 95 (602)
+.++++...
T Consensus 74 ~~v~~~l~~ 82 (211)
T COG2085 74 PDVLAELRD 82 (211)
T ss_pred HhHHHHHHH
Confidence 888888874
No 299
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=43.54 E-value=67 Score=31.63 Aligned_cols=120 Identities=13% Similarity=-0.010 Sum_probs=60.8
Q ss_pred CCCCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChh
Q 007482 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRS 84 (602)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~ 84 (602)
+.-++++|+| |..|+ ..++|.+.|.+++ ..+ .... +...+ .+-.|..+.++ .++... ++|+.+-+.....
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vv-v~D-~~~~-~~~~~--~~~~g~~~v~~-~~l~~~--~~Dv~vp~A~~~~ 97 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLI-VAD-INEE-AVARA--AELFGATVVAP-EEIYSV--DADVFAPCALGGV 97 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEc-CCHH-HHHHH--HHHcCCEEEcc-hhhccc--cCCEEEecccccc
Confidence 4456777775 33333 8888889999876 333 2111 11111 01113344433 444432 4899875544333
Q ss_pred hHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCee---EcCCcccccccC
Q 007482 85 AAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVV---IGPATVGGIQAG 139 (602)
Q Consensus 85 ~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~ri---iGPNc~G~~~~~ 139 (602)
.....++.+ +.+.++--+-+. ....+-.++.++.|+.+ ++-|+-|+++..
T Consensus 98 I~~~~~~~l---~~~~v~~~AN~~--~~~~~~~~~L~~~Gi~~~Pd~~~NaGGv~~~~ 150 (200)
T cd01075 98 INDDTIPQL---KAKAIAGAANNQ--LADPRHGQMLHERGILYAPDYVVNAGGLINVA 150 (200)
T ss_pred cCHHHHHHc---CCCEEEECCcCc--cCCHhHHHHHHHCCCEEeCceeeeCcCceeeh
Confidence 233444433 456444333221 11133445567889887 566888877644
No 300
>PLN00016 RNA-binding protein; Provisional
Probab=43.43 E-value=90 Score=33.55 Aligned_cols=26 Identities=4% Similarity=0.038 Sum_probs=18.4
Q ss_pred CCcEEEE----ee--CCcH-HHHHHHhcCCeEE
Q 007482 9 KTTQALF----YN--YKQL-PIQRMLDFDFLCV 34 (602)
Q Consensus 9 p~s~avv----~g--~~~~-~~~~~~~~g~~~V 34 (602)
+++|.|+ || +-|+ +++.|++.|++++
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~ 84 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVT 84 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCEEE
Confidence 3567777 63 3355 8888999999864
No 301
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=43.36 E-value=1.4e+02 Score=24.94 Aligned_cols=76 Identities=16% Similarity=0.217 Sum_probs=51.7
Q ss_pred EEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHhcCCCC
Q 007482 166 FVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNK 245 (602)
Q Consensus 166 lvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~~~K 245 (602)
+|.-+-.....+-.++. ..|+..+..+. +..+.++++...+ ..+|++=++..-.++..+++.+|+...+.
T Consensus 3 ivd~~~~~~~~l~~~l~--~~~~~~v~~~~-------~~~~~~~~~~~~~-~d~iiid~~~~~~~~~~~~~~i~~~~~~~ 72 (112)
T PF00072_consen 3 IVDDDPEIRELLEKLLE--RAGYEEVTTAS-------SGEEALELLKKHP-PDLIIIDLELPDGDGLELLEQIRQINPSI 72 (112)
T ss_dssp EEESSHHHHHHHHHHHH--HTTEEEEEEES-------SHHHHHHHHHHST-ESEEEEESSSSSSBHHHHHHHHHHHTTTS
T ss_pred EEECCHHHHHHHHHHHH--hCCCCEEEEEC-------CHHHHHHHhcccC-ceEEEEEeeeccccccccccccccccccc
Confidence 44445555555555555 34444444333 3457888887666 88888887756678999999999877788
Q ss_pred CEEEEE
Q 007482 246 PVVAWV 251 (602)
Q Consensus 246 PVv~~k 251 (602)
|||++-
T Consensus 73 ~ii~~t 78 (112)
T PF00072_consen 73 PIIVVT 78 (112)
T ss_dssp EEEEEE
T ss_pred cEEEec
Confidence 988885
No 302
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=43.00 E-value=1e+02 Score=33.22 Aligned_cols=57 Identities=9% Similarity=-0.030 Sum_probs=34.3
Q ss_pred CccEEEEecCChhhHHHHHHHhhCCCCcEEEEecCCCCHH----------HHHHHHHHHHhCCCeeEcCCccc
Q 007482 72 MADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEA----------DTKQLIAYARSNNKVVIGPATVG 134 (602)
Q Consensus 72 ~vDlavi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~----------~~~~l~~~a~~~g~riiGPNc~G 134 (602)
++|+++.++|... .......+.++|++ +|=.|+-|... -.+.|.. ..+ .|-.|||.=
T Consensus 68 ~~Divf~a~~~~~-s~~~~~~~~~~G~~-VID~Ss~fR~~~~vplvvPEvN~e~i~~---~~~-iIanPnC~t 134 (347)
T PRK06728 68 GVDIAFFSAGGEV-SRQFVNQAVSSGAI-VIDNTSEYRMAHDVPLVVPEVNAHTLKE---HKG-IIAVPNCSA 134 (347)
T ss_pred CCCEEEECCChHH-HHHHHHHHHHCCCE-EEECchhhcCCCCCCeEeCCcCHHHHhc---cCC-EEECCCCHH
Confidence 5899999998864 45556656556753 33346555422 2344443 135 588999953
No 303
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=42.75 E-value=1.1e+02 Score=33.82 Aligned_cols=113 Identities=14% Similarity=0.088 Sum_probs=61.2
Q ss_pred CCCCCcEEEEe-eCCcH-HHHHHHhcCCeEEE-EEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCC
Q 007482 6 LFSKTTQALFY-NYKQL-PIQRMLDFDFLCVA-GIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSF 82 (602)
Q Consensus 6 l~~p~s~avv~-g~~~~-~~~~~~~~g~~~V~-gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~ 82 (602)
++.=++++|+| |..|+ .++.+..+|.+++. ..+ |.+.- + ..-.|..+. +++|+.. +.|++|.++..
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~d-p~r~~-~-----A~~~G~~v~-~leeal~---~aDVVItaTG~ 260 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVD-PIRAL-E-----AAMDGFRVM-TMEEAAK---IGDIFITATGN 260 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCC-hhhHH-H-----HHhcCCEeC-CHHHHHh---cCCEEEECCCC
Confidence 34555666665 44455 66667778888632 223 52210 0 112344433 4566654 47999887765
Q ss_pred hhhHHH-HHHHhhCCCCcEEEEecCCCCH-HHHHHHHHHHHhCCCeeEcCCccc
Q 007482 83 RSAAAS-SMAALKQPTIRVVAIIAEGVPE-ADTKQLIAYARSNNKVVIGPATVG 134 (602)
Q Consensus 83 ~~~~~~-~~e~~~~~gv~~~viis~Gf~E-~~~~~l~~~a~~~g~riiGPNc~G 134 (602)
...+.. .++.+ .-..+++.++.|.. -+.+.|.+.+.+. +.++|+---
T Consensus 261 ~~vI~~~~~~~m---K~GailiN~G~~~~eId~~aL~~~~~~~--~~~~~~v~~ 309 (406)
T TIGR00936 261 KDVIRGEHFENM---KDGAIVANIGHFDVEIDVKALEELAVEK--RNVRPQVDE 309 (406)
T ss_pred HHHHHHHHHhcC---CCCcEEEEECCCCceeCHHHHHHHHhhc--cccccceEE
Confidence 543332 33322 23346666666663 5788888876553 356666433
No 304
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=42.69 E-value=22 Score=36.97 Aligned_cols=99 Identities=8% Similarity=-0.045 Sum_probs=49.4
Q ss_pred CCCcEEEEe-eCCcH-HHHHHHhcCCeEE-EEEeCCCCCCc-ccc---c------cCc----e----eecccccCCHHHH
Q 007482 8 SKTTQALFY-NYKQL-PIQRMLDFDFLCV-AGIINPGAEGF-QKL---F------FGQ----E----EIAIPVHSTVEAA 66 (602)
Q Consensus 8 ~p~s~avv~-g~~~~-~~~~~~~~g~~~V-~gv~~p~~~~~-~~~---~------~g~----~----v~G~~~y~sv~~i 66 (602)
.-++|+||| |..|. +..++...|++++ +..+ +..-.+ .+. . .|. + ...+..-.+++++
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 81 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVS-ADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDL 81 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHh
Confidence 346788887 33344 7778888898863 2222 211000 000 0 010 0 0113344556553
Q ss_pred hhcCCCccEEEEecCChh-hHHHHHHHhhCC-CCcEEEE-ecCCCCHH
Q 007482 67 CAAHPMADVFINFSSFRS-AAASSMAALKQP-TIRVVAI-IAEGVPEA 111 (602)
Q Consensus 67 ~~~~p~vDlavi~vp~~~-~~~~~~e~~~~~-gv~~~vi-is~Gf~E~ 111 (602)
. +.|++|.+||... ....+++.+.+. .-..+++ -|++++.+
T Consensus 82 -~---~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s 125 (292)
T PRK07530 82 -A---DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISIT 125 (292)
T ss_pred -c---CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH
Confidence 3 4899999998742 234555555432 1123343 47788753
No 305
>PRK12483 threonine dehydratase; Reviewed
Probab=42.00 E-value=3.8e+02 Score=30.67 Aligned_cols=196 Identities=17% Similarity=0.188 Sum_probs=98.3
Q ss_pred EEecCChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCC--eeEcCCcccccccCccccc-ccCCccccc
Q 007482 77 INFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNK--VVIGPATVGGIQAGAFKIG-DTAGTIDNI 153 (602)
Q Consensus 77 vi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~--riiGPNc~G~~~~~~~~l~-~~~~~~~~~ 153 (602)
||+..+.-.-.++--.|...|++..|++..+.++... +..|.+|- .+.|.+.-.-+.-.. .+- ..+..|-+.
T Consensus 88 VV~aSaGNha~gvA~aA~~lGi~~~IvmP~~tp~~Kv----~~~r~~GAeVil~g~~~d~a~~~A~-~la~e~g~~~v~p 162 (521)
T PRK12483 88 VITASAGNHAQGVALAAARLGVKAVIVMPRTTPQLKV----DGVRAHGGEVVLHGESFPDALAHAL-KLAEEEGLTFVPP 162 (521)
T ss_pred EEEECCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHH----HHHHHCCCEEEEECCCHHHHHHHHH-HHHHhcCCeeeCC
Confidence 4455554334566667778999999999999886543 34566664 455654332221111 110 001112110
Q ss_pred ccccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhc-CCCccEEEEEEecCCCcHH
Q 007482 154 IHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNN-IPQVKMMVVLGELGGRDEY 232 (602)
Q Consensus 154 ~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~-Dp~t~~I~ly~E~g~~~~~ 232 (602)
+. .|-.++ .| |+++.++++.+... + =.-++++|+-- .++=+..|+.+ .|+||+|.+--| +-..
T Consensus 163 fd----d~~via--Gq-gTig~EI~eQ~~~~-~-D~VvvpvGgGG----liaGia~~~K~~~p~vkVIGVep~-~a~~-- 226 (521)
T PRK12483 163 FD----DPDVIA--GQ-GTVAMEILRQHPGP-L-DAIFVPVGGGG----LIAGIAAYVKYVRPEIKVIGVEPD-DSNC-- 226 (521)
T ss_pred CC----ChHHHH--HH-HHHHHHHHHHhCCC-C-CEEEEecCccH----HHHHHHHHHHHhCCCCEEEEEEeC-CCch--
Confidence 00 122222 34 88999988765421 1 13466677653 22223334432 699999999888 5432
Q ss_pred HHHHHHHhcCCCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHh
Q 007482 233 SLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEK 310 (602)
Q Consensus 233 ~f~~~~r~~~~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~~~ 310 (602)
+.... ..+||+..=..++-..| .+.. ..| . ..|+.+-+-.+=+..=+-+|+.+.++.++.+
T Consensus 227 -~~~sl---~~g~~~~~~~~~t~adG----iav~----~~g-~----~~~~~~~~~vd~vv~Vse~ei~~ai~~l~~~ 287 (521)
T PRK12483 227 -LQAAL---AAGERVVLGQVGLFADG----VAVA----QIG-E----HTFELCRHYVDEVVTVSTDELCAAIKDIYDD 287 (521)
T ss_pred -hhHHH---hcCCcccCCCCCceece----eccC----CCC-H----HHHHHHHHhCCEEEEECHHHHHHHHHHHHHh
Confidence 22222 24667644222322222 1111 111 1 4454443344545555666777777766643
No 306
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=41.96 E-value=2e+02 Score=30.43 Aligned_cols=85 Identities=9% Similarity=0.024 Sum_probs=55.3
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEE-EEEEe--cCCCc-HHHHH
Q 007482 160 RPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMM-VVLGE--LGGRD-EYSLV 235 (602)
Q Consensus 160 ~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I-~ly~E--~g~~~-~~~f~ 235 (602)
.+|.--++...|.++..+...++..|+-+.. |.+.... .++..++.+.+.++++++.+ +.+.| .|... -+++.
T Consensus 76 ~~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~-v~~~~~~--~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I~ 152 (363)
T TIGR02326 76 PKDGKLLVVINGAYGARIVQIAEYLGIPHHV-VDTGEVE--PPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVA 152 (363)
T ss_pred CCCCeEEEEeCChhhHHHHHHHHHcCCceEE-EeCCCCC--CCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHHH
Confidence 4555556666777776655667777776644 5676555 67888888888888888754 56678 33333 45677
Q ss_pred HHHHhcCCCCCEEE
Q 007482 236 EALKQGKVNKPVVA 249 (602)
Q Consensus 236 ~~~r~~~~~KPVv~ 249 (602)
+.+++ .+.++|+
T Consensus 153 ~l~~~--~g~~liv 164 (363)
T TIGR02326 153 KLAHR--HGKVTIV 164 (363)
T ss_pred HHHHH--cCCEEEE
Confidence 77775 4555544
No 307
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=41.65 E-value=95 Score=29.68 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=13.0
Q ss_pred CCCCEEEEEeCcCccC
Q 007482 243 VNKPVVAWVSGTCARL 258 (602)
Q Consensus 243 ~~KPVv~~k~Gr~~~g 258 (602)
.+||+|+..-|..-.+
T Consensus 92 ~~~p~Ia~v~G~a~g~ 107 (195)
T cd06558 92 LPKPVIAAVNGAALGG 107 (195)
T ss_pred CCCCEEEEECCeeecH
Confidence 6899999998876544
No 308
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=41.48 E-value=3e+02 Score=30.47 Aligned_cols=164 Identities=13% Similarity=0.113 Sum_probs=88.3
Q ss_pred ccEEEEecCChhhHHHHHHHhhCCCCcEEEEecCCCCHH---HHHHHHHHHHh----CCCeeEcCCcccccccCcccccc
Q 007482 73 ADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEA---DTKQLIAYARS----NNKVVIGPATVGGIQAGAFKIGD 145 (602)
Q Consensus 73 vDlavi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~---~~~~l~~~a~~----~g~riiGPNc~G~~~~~~~~l~~ 145 (602)
.|++ +=....-.+++.+.+.+..-+.++|+++..+|. |.+.+.+.+++ .+++++.=+|-|+-.....+...
T Consensus 62 ~dvV--fGg~~kL~~aI~~~~~~~~P~~I~V~ttc~~~iiGdDi~~v~~~~~~~~~~~~~~vi~v~t~gF~g~~~~G~~~ 139 (429)
T cd03466 62 ETTV--YGGEKNLKKGLKNVIEQYNPEVIGIATTCLSETIGEDVPRIIREFREEVDDSEPKIIPASTPGYGGTHVEGYDT 139 (429)
T ss_pred CceE--ECcHHHHHHHHHHHHHhcCCCEEEEeCCchHHHhhcCHHHHHHHHhhcccCCCCcEEEEECCCCcccHHHHHHH
Confidence 4554 333343334444445545789999999999998 55666655555 37889988888875322101000
Q ss_pred -cCCcccccccccCCCCCcEEEEe--cChhHHHHHHHHHHhcCCceeEE-----------------eeccCCCCCCCCHH
Q 007482 146 -TAGTIDNIIHCKLYRPGSVGFVS--KSGGMSNELYNTIARVTDGIYEG-----------------IAIGGDVFPGSTLS 205 (602)
Q Consensus 146 -~~~~~~~~~p~~~~~~G~valvS--QSG~l~~~~~~~~~~~g~G~s~~-----------------vs~Gn~~~~dv~~~ 205 (602)
+.+.+. .+.....+++.|-++. .+.+=..++-..+...|+-+-.+ +..| +.++.
T Consensus 140 a~~al~~-~~~~~~~~~~~VNlig~~~~~~D~~ei~~lL~~~Gl~~~~~~d~s~~~~~~~~~~~~~~~~~-----g~~~~ 213 (429)
T cd03466 140 AVRSIVK-NIAVDPDKIEKINVIAGMMSPADIREIKEILREFGIEYILLPDTSETLDGPFWGEYHRLPSG-----GTPIS 213 (429)
T ss_pred HHHHHHH-HhccCCCCCCcEEEECCCCChhHHHHHHHHHHHcCCCeEEecCccccccCCCCCCcceeCCC-----CCCHH
Confidence 000011 1111123578898886 34333466777777777766221 1123 33344
Q ss_pred HHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHhcCCCCCEEEE
Q 007482 206 DHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAW 250 (602)
Q Consensus 206 d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~~~KPVv~~ 250 (602)
| +.+=++-+.-++..- ....+.++++..++ +.+.|.+.+
T Consensus 214 ~----i~~~~~A~lniv~~~-~~~~g~~~A~~L~e-~~giP~~~~ 252 (429)
T cd03466 214 E----IKGMGGAKATIELGM-FVDHGLSAGSYLEE-EFGIPNYRL 252 (429)
T ss_pred H----HHhhccCcEEEEEcc-CccchHHHHHHHHH-HHCCCeeec
Confidence 4 444555555444331 11335666777665 368886554
No 309
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=41.22 E-value=2.6e+02 Score=28.94 Aligned_cols=98 Identities=13% Similarity=0.058 Sum_probs=55.5
Q ss_pred HHHHHHhcCCeEEEEEeCCCCCCccccccCcee---------ecc---cccCCHHHHhhcCCCccEEEE-ecCC--hhhH
Q 007482 22 PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEE---------IAI---PVHSTVEAACAAHPMADVFIN-FSSF--RSAA 86 (602)
Q Consensus 22 ~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v---------~G~---~~y~sv~~i~~~~p~vDlavi-~vp~--~~~~ 86 (602)
.++.|.+.|-.++--= .|-.+ -...|..| .|. .++.-++++-.+ +++-+++. ...+ +.-+
T Consensus 34 ~~~~l~~~Gad~iElG-iPfSD---P~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~-~~~p~vlm~Y~N~i~~~G~ 108 (263)
T CHL00200 34 ALKILDKKGADIIELG-IPYSD---PLADGPIIQEASNRALKQGINLNKILSILSEVNGE-IKAPIVIFTYYNPVLHYGI 108 (263)
T ss_pred HHHHHHHCCCCEEEEC-CCCCC---CCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEEEEecccHHHHhCH
Confidence 6777888887653211 24111 01123333 233 456666665432 23443322 1111 2235
Q ss_pred HHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCe
Q 007482 87 ASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV 126 (602)
Q Consensus 87 ~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~r 126 (602)
+..+++|.+.|+..++|.= .|.+...++.+.++++|+.
T Consensus 109 e~F~~~~~~aGvdgviipD--LP~ee~~~~~~~~~~~gi~ 146 (263)
T CHL00200 109 NKFIKKISQAGVKGLIIPD--LPYEESDYLISVCNLYNIE 146 (263)
T ss_pred HHHHHHHHHcCCeEEEecC--CCHHHHHHHHHHHHHcCCC
Confidence 6789999999999988754 3444577899999999974
No 310
>PRK06179 short chain dehydrogenase; Provisional
Probab=40.74 E-value=3.8e+02 Score=26.70 Aligned_cols=24 Identities=0% Similarity=-0.022 Sum_probs=15.3
Q ss_pred CcEEEEeeCCcH----HHHHHHhcCCeEE
Q 007482 10 TTQALFYNYKQL----PIQRMLDFDFLCV 34 (602)
Q Consensus 10 ~s~avv~g~~~~----~~~~~~~~g~~~V 34 (602)
+.+.|. |.++. +++.+.+.|++++
T Consensus 5 ~~vlVt-Gasg~iG~~~a~~l~~~g~~V~ 32 (270)
T PRK06179 5 KVALVT-GASSGIGRATAEKLARAGYRVF 32 (270)
T ss_pred CEEEEe-cCCCHHHHHHHHHHHHCCCEEE
Confidence 344444 43333 7888888999864
No 311
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=40.32 E-value=3.7e+02 Score=26.41 Aligned_cols=177 Identities=7% Similarity=0.008 Sum_probs=84.2
Q ss_pred cccCCHHHHhhcCCCccEEEEecCChh-hHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCccccc
Q 007482 58 PVHSTVEAACAAHPMADVFINFSSFRS-AAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGI 136 (602)
Q Consensus 58 ~~y~sv~~i~~~~p~vDlavi~vp~~~-~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc~G~~ 136 (602)
..+..+.+...+.+ .++.+....... .....++.....++.++++++.... ....+.+++.|+.++-.+...--
T Consensus 16 ~~~~~i~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~----~~~~~~l~~~~iPvv~~~~~~~~ 90 (268)
T cd06273 16 RVIQAFQETLAAHG-YTLLVASSGYDLDREYAQARKLLERGVDGLALIGLDHS----PALLDLLARRGVPYVATWNYSPD 90 (268)
T ss_pred HHHHHHHHHHHHCC-CEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC----HHHHHHHHhCCCCEEEEcCCCCC
Confidence 34445666555543 666554332211 1224566666678988887654332 23445667789988776542100
Q ss_pred ccCc-ccccccCCcc--cccccccCCCCCcEEEEecChh-------HHHHHHHHHHhcCCcee--EEeeccCCCCCCCCH
Q 007482 137 QAGA-FKIGDTAGTI--DNIIHCKLYRPGSVGFVSKSGG-------MSNELYNTIARVTDGIY--EGIAIGGDVFPGSTL 204 (602)
Q Consensus 137 ~~~~-~~l~~~~~~~--~~~~p~~~~~~G~valvSQSG~-------l~~~~~~~~~~~g~G~s--~~vs~Gn~~~~dv~~ 204 (602)
.... ...++..+.. ...+- ....++|++++.+.. ....+.+.+.++++-+. .++...... +...
T Consensus 91 ~~~~~v~~d~~~~~~~~~~~l~--~~g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~--~~~~ 166 (268)
T cd06273 91 SPYPCVGFDNREAGRLAARHLI--ALGHRRIAMIFGPTQGNDRARARRAGVRAALAEAGLELPELWQVEAPYSI--ADGR 166 (268)
T ss_pred CCCCEEEeChHHHHHHHHHHHH--HCCCCeEEEEeccccCCccHHHHHHHHHHHHHHcCCCCCHHHeeeCCCcH--HHHH
Confidence 0000 0000000000 00000 114568999974321 12334455666665432 233322222 2223
Q ss_pred HHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHhcCCCCC
Q 007482 205 SDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKP 246 (602)
Q Consensus 205 ~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~~~KP 246 (602)
..+.++|...+..++|+. - +-.....+++++++...+.|
T Consensus 167 ~~~~~~l~~~~~~~ai~~--~-~~~~a~~~~~~l~~~g~~~p 205 (268)
T cd06273 167 AALRQLLEQPPRPTAVIC--G-NDVLALGALYEARRLGLSVP 205 (268)
T ss_pred HHHHHHHcCCCCCCEEEE--c-ChHHHHHHHHHHHHcCCCCC
Confidence 334455555677777665 2 22444567888887555555
No 312
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=40.32 E-value=75 Score=32.84 Aligned_cols=37 Identities=16% Similarity=0.131 Sum_probs=25.3
Q ss_pred CccEEEEecCChhhHHHHHHHhhCC-CCc-EEEEecCCCC
Q 007482 72 MADVFINFSSFRSAAASSMAALKQP-TIR-VVAIIAEGVP 109 (602)
Q Consensus 72 ~vDlavi~vp~~~~~~~~~e~~~~~-gv~-~~viis~Gf~ 109 (602)
+.|++++++|+.. ++.+++.+... .-+ .++.+.-|+.
T Consensus 68 ~~d~vilavk~~~-~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 68 PFDLVILAVKAYQ-LDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred CCCEEEEEecccC-HHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 4799999999865 78888877642 112 3444567885
No 313
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=40.03 E-value=34 Score=38.67 Aligned_cols=96 Identities=14% Similarity=0.035 Sum_probs=50.9
Q ss_pred CcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCC--ccccc----------c-Cc--eeec-ccccCCHHHHhhcCC
Q 007482 10 TTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEG--FQKLF----------F-GQ--EEIA-IPVHSTVEAACAAHP 71 (602)
Q Consensus 10 ~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~--~~~~~----------~-g~--~v~G-~~~y~sv~~i~~~~p 71 (602)
++|+||| |..|. ...+++..|+.++ ..+ +.... +.... . +. ...| +....+++++..
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~-v~D-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~--- 79 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVA-VFD-PHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVA--- 79 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEE-EEe-CCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhc---
Confidence 4789997 43444 8888899999862 233 32110 00000 0 00 0122 456677877654
Q ss_pred CccEEEEecCChhhH-HHHHHHhhC---CCCcEEEEecCCCCHH
Q 007482 72 MADVFINFSSFRSAA-ASSMAALKQ---PTIRVVAIIAEGVPEA 111 (602)
Q Consensus 72 ~vDlavi~vp~~~~~-~~~~e~~~~---~gv~~~viis~Gf~E~ 111 (602)
+.|+++.++|....+ ..+++.+.+ .++ .+...|+|++.+
T Consensus 80 ~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~-iI~SsTsgi~~s 122 (495)
T PRK07531 80 GADWIQESVPERLDLKRRVLAEIDAAARPDA-LIGSSTSGFLPS 122 (495)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCc-EEEEcCCCCCHH
Confidence 489999999987432 334443332 221 233335687754
No 314
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=40.00 E-value=89 Score=32.17 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=28.3
Q ss_pred ccccCCHHHHhhcCCCccEEEEecCChhhH-HHHHHHhhCCCCc--EEE-EecCCCCHH
Q 007482 57 IPVHSTVEAACAAHPMADVFINFSSFRSAA-ASSMAALKQPTIR--VVA-IIAEGVPEA 111 (602)
Q Consensus 57 ~~~y~sv~~i~~~~p~vDlavi~vp~~~~~-~~~~e~~~~~gv~--~~v-iis~Gf~E~ 111 (602)
+....+.+++ . +.|++++++|....+ ..+++++.+ -++ .++ -.++|++.+
T Consensus 71 l~~~~~~~~~-~---~aDlVi~av~e~~~~k~~~~~~l~~-~~~~~~il~s~ts~~~~~ 124 (282)
T PRK05808 71 ITGTTDLDDL-K---DADLVIEAATENMDLKKKIFAQLDE-IAKPEAILATNTSSLSIT 124 (282)
T ss_pred eEEeCCHHHh-c---cCCeeeecccccHHHHHHHHHHHHh-hCCCCcEEEECCCCCCHH
Confidence 3444555553 3 479999999864322 366666653 222 233 335677654
No 315
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=39.70 E-value=64 Score=31.31 Aligned_cols=50 Identities=14% Similarity=0.176 Sum_probs=34.0
Q ss_pred HHHHHHhhcCCCccEEEEEEecCCCcH---HHHHHHHHhcCCCCCEEEEEeCcCcc
Q 007482 205 SDHILRFNNIPQVKMMVVLGELGGRDE---YSLVEALKQGKVNKPVVAWVSGTCAR 257 (602)
Q Consensus 205 ~d~l~~l~~Dp~t~~I~ly~E~g~~~~---~~f~~~~r~~~~~KPVv~~k~Gr~~~ 257 (602)
.+.|+...+++ .+.|++++.-.+..- +...+.+++ ..||||++..|...+
T Consensus 19 ~~~l~~a~~~~-~~~ivl~inspGG~v~~~~~I~~~l~~--~~~pvva~V~g~AaS 71 (178)
T cd07021 19 ERALKEAKEEG-ADAVVLDIDTPGGRVDSALEIVDLILN--SPIPTIAYVNDRAAS 71 (178)
T ss_pred HHHHHHHHhCC-CCeEEEEEECcCCCHHHHHHHHHHHHh--CCCCEEEEECCchHH
Confidence 34455566676 899999999444443 445555554 569999999886654
No 316
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=39.69 E-value=1.3e+02 Score=33.53 Aligned_cols=84 Identities=18% Similarity=0.053 Sum_probs=57.7
Q ss_pred eecccccCCHHHHhhcCCCccEEEEecCChhh-HHHHHHHhhCCCCcEEEEecCCC-------CHHHHHHHHHHHHhCCC
Q 007482 54 EIAIPVHSTVEAACAAHPMADVFINFSSFRSA-AASSMAALKQPTIRVVAIIAEGV-------PEADTKQLIAYARSNNK 125 (602)
Q Consensus 54 v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~-~~~~~e~~~~~gv~~~viis~Gf-------~E~~~~~l~~~a~~~g~ 125 (602)
+.--|+|+....+....+ +.+.-|.+-...- +++.-+.|.+.++|.+.++++.= +++.-++|+++|+++++
T Consensus 183 ~vE~PtY~~~~~~~~~~g-~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~ 261 (459)
T COG1167 183 LVEDPTYPGALQALEALG-ARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDV 261 (459)
T ss_pred EEcCCCcHHHHHHHHHcC-CcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCC
Confidence 345689999888877653 6666555533322 34444556656799999988643 34467899999999999
Q ss_pred eeEcCCccccccc
Q 007482 126 VVIGPATVGGIQA 138 (602)
Q Consensus 126 riiGPNc~G~~~~ 138 (602)
.||==+..|-+..
T Consensus 262 ~IIEDD~y~el~~ 274 (459)
T COG1167 262 LIIEDDYYGELRY 274 (459)
T ss_pred eEEeeCcchhhhc
Confidence 9987666665543
No 317
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=39.64 E-value=99 Score=33.04 Aligned_cols=108 Identities=13% Similarity=0.091 Sum_probs=63.8
Q ss_pred CCCCcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChh
Q 007482 7 FSKTTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRS 84 (602)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~ 84 (602)
+.=+++.|+| |--|+ +.+.+..||.++++--.+|+ .. .+-.+--.|-++.|+.. +.|..++.+|...
T Consensus 144 l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~-------~~~~~~~~y~~l~ell~---~sDii~l~~Plt~ 212 (324)
T COG1052 144 LRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PE-------AEKELGARYVDLDELLA---ESDIISLHCPLTP 212 (324)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hH-------HHhhcCceeccHHHHHH---hCCEEEEeCCCCh
Confidence 4456888886 43344 67777767777543222222 11 11222244555999887 4699999999854
Q ss_pred hHH-----HHHHHhhCCCCcEEEEecCCCCHH-HHHHHHHHHHhCCCeeEc
Q 007482 85 AAA-----SSMAALKQPTIRVVAIIAEGVPEA-DTKQLIAYARSNNKVVIG 129 (602)
Q Consensus 85 ~~~-----~~~e~~~~~gv~~~viis~Gf~E~-~~~~l~~~a~~~g~riiG 129 (602)
..- +.++.+. +.+++|-.+=... +++.|++..++..+.=.|
T Consensus 213 ~T~hLin~~~l~~mk----~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gag 259 (324)
T COG1052 213 ETRHLINAEELAKMK----PGAILVNTARGGLVDEQALIDALKSGKIAGAG 259 (324)
T ss_pred HHhhhcCHHHHHhCC----CCeEEEECCCccccCHHHHHHHHHhCCcceEE
Confidence 332 2344443 3455555554444 889999998887665444
No 318
>PF09350 DUF1992: Domain of unknown function (DUF1992); InterPro: IPR018961 This entry represents a family of proteins that may have a role in protein folding or as a chaperone. DnaJ is a member of the J-protein family, which are defined by the presence of a J domain that can regulate the activity of 70kDa heat-shock proteins []. Some of the proteins in this entry contain a J domain.
Probab=39.12 E-value=1.8e+02 Score=23.82 Aligned_cols=58 Identities=14% Similarity=0.244 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCC--CcCCCCCCCCCCCCCcHH----HHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 007482 463 AYEFVESMKKKGI--RVPGIGHRIKRGDNRDKR----VELLQKFARTHFPSVKYMEYAVQVETYT 521 (602)
Q Consensus 463 ~~~~v~~~~~~~~--~ipGfGH~v~~~~~~DPR----a~~L~~~~~~~~~~~~~~~~a~~ie~~~ 521 (602)
+++.|++..++|+ .+||.|-|+-..++ ||. ...+.++.+..+.--|++++-.++++..
T Consensus 2 ~e~~I~~A~~~GeFdnLpG~GKPL~~~~~-~~~~~~~~~~~~~iLk~~g~lPp~i~l~kei~~l~ 65 (71)
T PF09350_consen 2 AERRIREAMARGEFDNLPGAGKPLPLDDD-NPYWPAEERMANRILKNAGYLPPWIELRKEIEELR 65 (71)
T ss_pred HHHHHHHHHHcCCccCCCCCCCCCCCCCC-CcCCCHHHHHHHHhhcccCCCCHHHHHHHHHHHHH
Confidence 3566777777775 79999999986543 343 3455555554455578888888887653
No 319
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=39.07 E-value=2.8e+02 Score=30.53 Aligned_cols=156 Identities=15% Similarity=0.172 Sum_probs=86.7
Q ss_pred HHHHHHhhCCCCcEEEEecCCCCHH---HHHHHHHHHHh-----CCCeeEcCCcccccccCcccccc-cCCccccccccc
Q 007482 87 ASSMAALKQPTIRVVAIIAEGVPEA---DTKQLIAYARS-----NNKVVIGPATVGGIQAGAFKIGD-TAGTIDNIIHCK 157 (602)
Q Consensus 87 ~~~~e~~~~~gv~~~viis~Gf~E~---~~~~l~~~a~~-----~g~riiGPNc~G~~~~~~~~l~~-~~~~~~~~~p~~ 157 (602)
..+.+.+.+...+.++|+++..+|. |.+.+.+.+++ .|+.|+.-||.|+-.....+... +.+.+....+..
T Consensus 71 ~~i~~~~~~~~p~~I~v~~tC~~~liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~~G~~~a~~al~~~~~~~~ 150 (428)
T cd01965 71 EALKNLLSRYKPDVIGVLTTCLTETIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSHETGYDNAVKAIIEQLAKPS 150 (428)
T ss_pred HHHHHHHHhcCCCEEEEECCcchhhcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHHHHHHHHHHHHHHHHhccc
Confidence 4444445555788999999999988 66666666654 68999999998887422201000 001111111111
Q ss_pred -CCCCCcEEEEe---cChhHHHHHHHHHHhcCCceeEEeeccCCCC------------CCCCHHHHHHHhhcCCCccEEE
Q 007482 158 -LYRPGSVGFVS---KSGGMSNELYNTIARVTDGIYEGIAIGGDVF------------PGSTLSDHILRFNNIPQVKMMV 221 (602)
Q Consensus 158 -~~~~G~valvS---QSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~------------~dv~~~d~l~~l~~Dp~t~~I~ 221 (602)
...++.|-++. .+..=..++...+.+.|+-+..+....+..+ .+.++.|+ .+=++-+.-+
T Consensus 151 ~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~~~e~i----~~~~~A~lni 226 (428)
T cd01965 151 EVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTLEEI----RDAGNAKATI 226 (428)
T ss_pred CCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCCCcHHHH----HHhccCcEEE
Confidence 13678899884 2333246777888888888777665422110 02234443 3444444433
Q ss_pred EEEecCCCcHHHHHHHHHhcCCCCCEEEE
Q 007482 222 VLGELGGRDEYSLVEALKQGKVNKPVVAW 250 (602)
Q Consensus 222 ly~E~g~~~~~~f~~~~r~~~~~KPVv~~ 250 (602)
+... ..+..+++.+++ +.+.|-+..
T Consensus 227 v~~~---~~~~~~a~~L~e-~~GiP~~~~ 251 (428)
T cd01965 227 ALGE---YSGRKAAKALEE-KFGVPYILF 251 (428)
T ss_pred EECh---hhhHHHHHHHHH-HHCCCeeec
Confidence 3222 345566666665 367887754
No 320
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=38.91 E-value=88 Score=33.68 Aligned_cols=51 Identities=12% Similarity=0.051 Sum_probs=35.3
Q ss_pred ccccCCHHHHhhcCCCccEEEEecCChhhHHHHHHHhhCC--CCcEEEEecCCCCHH
Q 007482 57 IPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQP--TIRVVAIIAEGVPEA 111 (602)
Q Consensus 57 ~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~~e~~~~~--gv~~~viis~Gf~E~ 111 (602)
+....+++++.+ +.|+.+++||... ...+++.+... .-+.+|.++-||-..
T Consensus 70 i~at~dl~eal~---~ADiIIlAVPs~~-i~~vl~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 70 LVAVPDLVEAAK---GADILVFVIPHQF-LEGICKQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred eEEECCHHHHHh---cCCEEEEECChHH-HHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence 446677887765 4799999999875 77777777531 123466778899543
No 321
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=38.86 E-value=3.6e+02 Score=29.74 Aligned_cols=158 Identities=16% Similarity=0.216 Sum_probs=89.7
Q ss_pred EecCChhhHHHHHHHh-hCCCCcEEEEecCCCCHH---HHHHHHHHHHhC-----CCeeEcCCcccccccCccccccc-C
Q 007482 78 NFSSFRSAAASSMAAL-KQPTIRVVAIIAEGVPEA---DTKQLIAYARSN-----NKVVIGPATVGGIQAGAFKIGDT-A 147 (602)
Q Consensus 78 i~vp~~~~~~~~~e~~-~~~gv~~~viis~Gf~E~---~~~~l~~~a~~~-----g~riiGPNc~G~~~~~~~~l~~~-~ 147 (602)
|+=.... +...++.+ .+.+-+.+.|+|+..+|. |.+.+.+.+++. +++++.-||.|+......+.... .
T Consensus 62 VfGg~~~-L~~~i~~~~~~~~p~~I~V~ttc~~eiIGdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~~~~G~~~a~~ 140 (417)
T cd01966 62 ILGGGEN-LEEALDTLAERAKPKVIGLLSTGLTETRGEDIAGALKQFRAEHPELADVPVVYVSTPDFEGSLEDGWAAAVE 140 (417)
T ss_pred EECCHHH-HHHHHHHHHHhcCCCEEEEECCCcccccccCHHHHHHHHHhhccccCCCeEEEecCCCCCCcHHHHHHHHHH
Confidence 3444443 44444444 455789999999999998 667776666655 89999999999874332111000 0
Q ss_pred Cccccccccc---CCCCCcEEEEe---cChhHHHHHHHHHHhcCCceeEE-----------------eeccCCCCCCCCH
Q 007482 148 GTIDNIIHCK---LYRPGSVGFVS---KSGGMSNELYNTIARVTDGIYEG-----------------IAIGGDVFPGSTL 204 (602)
Q Consensus 148 ~~~~~~~p~~---~~~~G~valvS---QSG~l~~~~~~~~~~~g~G~s~~-----------------vs~Gn~~~~dv~~ 204 (602)
+.+....+.. ...++.|-++. .+.+=..++-..+.+.|+-+-.+ +.+|+ .++
T Consensus 141 al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~~l~d~s~~~d~~~~~~~~~~~~gg-----t~l 215 (417)
T cd01966 141 AIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPIILPDLSGSLDGHLADDWSPTTTGG-----TTL 215 (417)
T ss_pred HHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceEEecCcccccCCCCCCCccccCCCC-----CcH
Confidence 0011111111 13578899995 33333456777777666665222 12233 334
Q ss_pred HHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHhcCCCCCEEEE
Q 007482 205 SDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAW 250 (602)
Q Consensus 205 ~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~~~KPVv~~ 250 (602)
.| +.+=++-+.-++..+ . ...+++.+++ +.+.|-+.+
T Consensus 216 ee----i~~~~~A~lniv~~~-~---~~~~a~~Lee-~~GiP~~~~ 252 (417)
T cd01966 216 ED----IRQMGRSAATLAIGE-S---MRKAAEALEE-RTGVPYYVF 252 (417)
T ss_pred HH----HHhhccCeEEEEECH-H---HHHHHHHHHH-HHCCCeeec
Confidence 44 445566666655444 2 3466666665 367887754
No 322
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=38.70 E-value=2.5e+02 Score=30.00 Aligned_cols=251 Identities=15% Similarity=0.140 Sum_probs=127.5
Q ss_pred CcEEEEeeCC--cH-HHHHHHhcCCeEEEEEeCCCCCCc-------cccccCceeecccccCCHHHHhhcCCCccEEEEe
Q 007482 10 TTQALFYNYK--QL-PIQRMLDFDFLCVAGIINPGAEGF-------QKLFFGQEEIAIPVHSTVEAACAAHPMADVFINF 79 (602)
Q Consensus 10 ~s~avv~g~~--~~-~~~~~~~~g~~~V~gv~~p~~~~~-------~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~ 79 (602)
++|-|.||++ |+ .++.|++.||++| .++.-..++. .+++.| . +.=...+.++..+. ++|.++=|
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vv-V~DNL~~g~~~~v~~~~~~f~~g-D---i~D~~~L~~vf~~~-~idaViHF 74 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVV-VLDNLSNGHKIALLKLQFKFYEG-D---LLDRALLTAVFEEN-KIDAVVHF 74 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEE-EEecCCCCCHHHhhhccCceEEe-c---cccHHHHHHHHHhc-CCCEEEEC
Confidence 4677777644 55 7788999999975 2332433221 122222 1 22223455666655 58988755
Q ss_pred cCChhh-----------------HHHHHHHhhCCCCcEEEEecC----CCCHH---------------------HHHHHH
Q 007482 80 SSFRSA-----------------AASSMAALKQPTIRVVAIIAE----GVPEA---------------------DTKQLI 117 (602)
Q Consensus 80 vp~~~~-----------------~~~~~e~~~~~gv~~~viis~----Gf~E~---------------------~~~~l~ 117 (602)
.....+ ....+++|.+.||+.+|--|+ |-++. .|+-|.
T Consensus 75 Aa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~PI~E~~~~~p~NPYG~sKlm~E~iL~ 154 (329)
T COG1087 75 AASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSPISETSPLAPINPYGRSKLMSEEILR 154 (329)
T ss_pred ccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcccCCCCCCCCCCcchhHHHHHHHHHH
Confidence 433221 235789999999998876544 54443 255567
Q ss_pred HHHHhCCCeeEcCCcccccccCcccccccCCcccccccccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeec-cC
Q 007482 118 AYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAI-GG 196 (602)
Q Consensus 118 ~~a~~~g~riiGPNc~G~~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~-Gn 196 (602)
..++.++.+++ ++=.+|+.- + .+.|.+|= .-.-.+.++-.+.+.-+|....+++ |+
T Consensus 155 d~~~a~~~~~v---~LRYFN~aG-------A----------~~~G~iGe---~~~~~thLip~~~q~A~G~r~~l~ifG~ 211 (329)
T COG1087 155 DAAKANPFKVV---ILRYFNVAG-------A----------CPDGTLGQ---RYPGATLLIPVAAEAALGKRDKLFIFGD 211 (329)
T ss_pred HHHHhCCCcEE---EEEeccccc-------C----------CCCCccCC---CCCCcchHHHHHHHHHhcCCceeEEeCC
Confidence 77788887643 122222211 0 01122111 1111133333444444554443333 44
Q ss_pred CC----------CC-CCCHHH----HHHHhhcCCCccEEEEEEecCCCc---HHHHHHHHHhcCCCCCEEEEEeCcCccC
Q 007482 197 DV----------FP-GSTLSD----HILRFNNIPQVKMMVVLGELGGRD---EYSLVEALKQGKVNKPVVAWVSGTCARL 258 (602)
Q Consensus 197 ~~----------~~-dv~~~d----~l~~l~~Dp~t~~I~ly~E~g~~~---~~~f~~~~r~~~~~KPVv~~k~Gr~~~g 258 (602)
+- |+ -+|++| .|+||.+ ....-+.=. |-.. -.+.++++++++ ++|+-+-...|-+
T Consensus 212 DY~T~DGT~iRDYIHV~DLA~aH~~Al~~L~~-~g~~~~~NL---G~G~G~SV~evi~a~~~vt-g~~ip~~~~~RR~-- 284 (329)
T COG1087 212 DYDTKDGTCIRDYIHVDDLADAHVLALKYLKE-GGSNNIFNL---GSGNGFSVLEVIEAAKKVT-GRDIPVEIAPRRA-- 284 (329)
T ss_pred CCCCCCCCeeeeeeehhHHHHHHHHHHHHHHh-CCceeEEEc---cCCCceeHHHHHHHHHHHh-CCcCceeeCCCCC--
Confidence 31 00 112222 3677777 444322221 2233 356777778765 3444333333332
Q ss_pred ccccccccccCCcCCCCcchHHHHHHHHHHcCCcccC-CHHHHHHHHHHHHHh
Q 007482 259 FKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPT-SYEAFESAIKETFEK 310 (602)
Q Consensus 259 ~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~-~~~el~~~~~~~~~~ 310 (602)
+--+.+..+. +.+-++.|--.-. |+++|..-+....++
T Consensus 285 -------GDpa~l~Ad~-------~kA~~~Lgw~p~~~~L~~ii~~aw~W~~~ 323 (329)
T COG1087 285 -------GDPAILVADS-------SKARQILGWQPTYDDLEDIIKDAWDWHQQ 323 (329)
T ss_pred -------CCCceeEeCH-------HHHHHHhCCCcccCCHHHHHHHHHHHhhh
Confidence 2223333322 3667788888777 899988888766553
No 323
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=38.56 E-value=2.8e+02 Score=25.64 Aligned_cols=145 Identities=10% Similarity=-0.021 Sum_probs=69.3
Q ss_pred HHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHH-HhCCCeeEcCCcccccccCcccccccCCcccccccccCCCCCcEE
Q 007482 87 ASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYA-RSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVG 165 (602)
Q Consensus 87 ~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a-~~~g~riiGPNc~G~~~~~~~~l~~~~~~~~~~~p~~~~~~G~va 165 (602)
+.+.+.+.+.||+.+.-+..+..-...+.+.+.+ ++.+++++.+.- . . .+.+...-... .-+++.
T Consensus 3 e~i~~~L~~~gv~~vfg~PG~~~~~~~~~l~~~~~~~~~i~~i~~~~-------E-~----~A~~~A~g~~r--~~~~v~ 68 (160)
T cd07034 3 EAVARGALAAGVDVVAAYPITPSTEIAETLAKAVLGELGGVVVQAES-------E-H----AAAEAAIGASA--AGARAM 68 (160)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCHHHHHHHHHHHhccCCCcEEEEeCC-------H-H----HHHHHHHHHHh--hCCcEE
Confidence 4566777778888888877654333333332110 135677765531 1 0 11111100100 123388
Q ss_pred EEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCC-----CHHHHHHHhhcCCCccEEEEEEecCCCcHHHHHHH---
Q 007482 166 FVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGS-----TLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEA--- 237 (602)
Q Consensus 166 lvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv-----~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~--- 237 (602)
++++..++...+-..+....-+.--++=+|.....+. .+.|+-......| ||.. . ...+++++.+.
T Consensus 69 ~~~~gpG~~n~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~-~~~~~~~~~~~~~~ 142 (160)
T cd07034 69 TATSGPGLNLMAEALYLAAGAELPLVIVVAQRPGPSTGLPKPDQSDLMAARYGGH-PWPV----L-APSSVQEAFDLALE 142 (160)
T ss_pred EeeCcchHHHHHHHHHHHHhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHHHhCCC-CEEE----E-eCCCHHHHHHHHHH
Confidence 8888888877765554444444444444454432222 2333333333344 5533 2 23444444333
Q ss_pred -HHhcC-CCCCEEEEE
Q 007482 238 -LKQGK-VNKPVVAWV 251 (602)
Q Consensus 238 -~r~~~-~~KPVv~~k 251 (602)
.+.+. .++||+++-
T Consensus 143 A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 143 AFELAEKYRLPVIVLS 158 (160)
T ss_pred HHHHHHHhCCCEEEEc
Confidence 33332 237998764
No 324
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=38.47 E-value=3.9e+02 Score=26.13 Aligned_cols=72 Identities=6% Similarity=-0.008 Sum_probs=40.9
Q ss_pred cccCCHHHHhhcCCCccEEEEecCC-hhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCc
Q 007482 58 PVHSTVEAACAAHPMADVFINFSSF-RSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPAT 132 (602)
Q Consensus 58 ~~y~sv~~i~~~~p~vDlavi~vp~-~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc 132 (602)
..+..+++...+.+ .++.+..... .......++.+.+.++.++++.+... ....+.++.+++.++.++-.++
T Consensus 16 ~~~~~i~~~~~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~~~~--~~~~~~l~~l~~~~ipvv~~~~ 88 (268)
T cd06323 16 TLKDGAQKEAKELG-YELTVLDAQNDAAKQLNDIEDLITRGVDAIIINPTDS--DAVVPAVKAANEAGIPVFTIDR 88 (268)
T ss_pred HHHHHHHHHHHHcC-ceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCh--HHHHHHHHHHHHCCCcEEEEcc
Confidence 45556677666553 7776543321 11123567777767898888764322 2223455556778887765544
No 325
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=38.10 E-value=84 Score=31.88 Aligned_cols=51 Identities=22% Similarity=0.180 Sum_probs=35.9
Q ss_pred ccCCHHHHhhcCCCccEEEEecCChhhHHHHHHHhhC--CCCcEEEEecCCCCHHHH
Q 007482 59 VHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQ--PTIRVVAIIAEGVPEADT 113 (602)
Q Consensus 59 ~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~~e~~~~--~gv~~~viis~Gf~E~~~ 113 (602)
.+.+..++.+ +.|++|++|++. .+.++++++.. .+=+.+|-+++|++-...
T Consensus 33 ~~~~~~e~~~---~aDiIiLaVkP~-~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l 85 (245)
T TIGR00112 33 ASSDAQEAVK---EADVVFLAVKPQ-DLEEVLSELKSEKGKDKLLISIAAGVTLEKL 85 (245)
T ss_pred EeCChHHHHh---hCCEEEEEeCHH-HHHHHHHHHhhhccCCCEEEEecCCCCHHHH
Confidence 3456666654 379999999975 58888888762 223577778899986543
No 326
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=37.89 E-value=53 Score=27.84 Aligned_cols=55 Identities=16% Similarity=0.179 Sum_probs=33.1
Q ss_pred cEEEEecCChhhHHHHHHHhhCCCCcEEEEecCC--CCHHHHHHHHHHHHhCCCeeEc
Q 007482 74 DVFINFSSFRSAAASSMAALKQPTIRVVAIIAEG--VPEADTKQLIAYARSNNKVVIG 129 (602)
Q Consensus 74 Dlavi~vp~~~~~~~~~e~~~~~gv~~~viis~G--f~E~~~~~l~~~a~~~g~riiG 129 (602)
|..||=.|+. +-+..+.-+....+..+|++|.- .+-.+.++-.+++++.+++++|
T Consensus 2 D~LiiD~PPG-TgD~~l~~~~~~~~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilG 58 (81)
T PF10609_consen 2 DYLIIDLPPG-TGDEHLTLMQYLPIDGAIVVTTPQELALADVRRAIDMFRKLNVPILG 58 (81)
T ss_dssp CEEEEE--SC-SSSHHHHHHHHH--SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEE
T ss_pred CEEEEeCCCC-CCcHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEE
Confidence 6667777774 23444444444447777888764 4445788899999999999987
No 327
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=37.73 E-value=64 Score=32.97 Aligned_cols=54 Identities=24% Similarity=0.340 Sum_probs=30.3
Q ss_pred HHHHHHHhhcCCCccEEEEEEecCCC------c-------------HHHHHHHHHhcCCCCCEEEEEeCcCccC
Q 007482 204 LSDHILRFNNIPQVKMMVVLGELGGR------D-------------EYSLVEALKQGKVNKPVVAWVSGTCARL 258 (602)
Q Consensus 204 ~~d~l~~l~~Dp~t~~I~ly~E~g~~------~-------------~~~f~~~~r~~~~~KPVv~~k~Gr~~~g 258 (602)
+.+.++.+..||++++|++-.+ |-+ | ...|....+.....||||+..-|.+-.|
T Consensus 36 l~~~l~~~~~d~~v~~vVl~g~-g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~Gg 108 (259)
T PRK06494 36 LEEVFDDFAADPEQWVAIVTGA-GDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFDLDKPIIAAVNGVAMGG 108 (259)
T ss_pred HHHHHHHHhhCCCcEEEEEEcC-CCCceeccccHHhHhhcCcchhhhHHHHHHHHHhcCCCCEEEEECCEEecH
Confidence 3455555566666666666665 411 0 1123222223346899999998876544
No 328
>KOG3505 consensus Mitochondrial/chloroplast ribosomal protein L33-like [Translation, ribosomal structure and biogenesis]
Probab=37.53 E-value=37 Score=26.20 Aligned_cols=42 Identities=17% Similarity=0.128 Sum_probs=35.0
Q ss_pred HHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEe
Q 007482 177 LYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGE 225 (602)
Q Consensus 177 ~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E 225 (602)
+......+|-||+++.|.-.-+ +-|.+..-||-++-=+|+-|
T Consensus 10 lirlvStAgtGf~~~~s~~k~~-------~klt~~kYDPvVkr~VLF~E 51 (55)
T KOG3505|consen 10 LIRLVSTAGTGFFYVKSRKKLA-------EKLTFRKYDPVVKRHVLFTE 51 (55)
T ss_pred HHHHHHhcccceEEEEeccccc-------ccceeeecCchheeeeeeeh
Confidence 3455667899999999876655 78889999999999999988
No 329
>PRK12435 ferrochelatase; Provisional
Probab=37.48 E-value=61 Score=34.39 Aligned_cols=48 Identities=6% Similarity=-0.020 Sum_probs=35.4
Q ss_pred HHHHHHHhhCC-CCcEEEEecCCCCHH-------HHHHHHHHHHhCCCeeEcCCcc
Q 007482 86 AASSMAALKQP-TIRVVAIIAEGVPEA-------DTKQLIAYARSNNKVVIGPATV 133 (602)
Q Consensus 86 ~~~~~e~~~~~-gv~~~viis~Gf~E~-------~~~~l~~~a~~~g~riiGPNc~ 133 (602)
+++.++++.+. |+|.++|++=||--. .-.+..+.+++.|+...=+.|+
T Consensus 234 t~d~l~~l~~~~G~k~v~vvpigFvsDhlETl~Eldie~~e~a~~~G~~~~r~~~l 289 (311)
T PRK12435 234 VQDLTRDLYEEHGYKSFIYTPVGFVAEHLEVLYDNDYECKVVTDEIGAKYYRPEMP 289 (311)
T ss_pred HHHHHHHHHHhcCCceEEEECCchhhhhHHHHHHHHHHHHHHHHHcCCcEEeccCC
Confidence 45778877666 999999999999533 2345678899999876666664
No 330
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=37.43 E-value=43 Score=35.03 Aligned_cols=95 Identities=15% Similarity=0.046 Sum_probs=47.9
Q ss_pred CcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCC--cccc----ccCc--------eeec-ccccCCHHHHhhcCCC
Q 007482 10 TTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEG--FQKL----FFGQ--------EEIA-IPVHSTVEAACAAHPM 72 (602)
Q Consensus 10 ~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~--~~~~----~~g~--------~v~G-~~~y~sv~~i~~~~p~ 72 (602)
++|+||| |..|. +...+...|++++ .++ +.... +... ..|. ...+ +....+.+++.. +
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~-~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~ 79 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVV-LID-VMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVS---G 79 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEE-EEE-CCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhc---c
Confidence 4688886 33344 7778888888753 343 31110 0000 0010 0001 223455666443 4
Q ss_pred ccEEEEecCChh-hHHHHHHHhhCC-CCcEEE-EecCCCC
Q 007482 73 ADVFINFSSFRS-AAASSMAALKQP-TIRVVA-IIAEGVP 109 (602)
Q Consensus 73 vDlavi~vp~~~-~~~~~~e~~~~~-gv~~~v-iis~Gf~ 109 (602)
.|+++++||... ....+++++... .-+.++ ..++|.+
T Consensus 80 aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~ 119 (311)
T PRK06130 80 ADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLP 119 (311)
T ss_pred CCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCC
Confidence 799999999863 245566655431 112233 3566776
No 331
>PLN03085 nucleobase:cation symporter-1; Provisional
Probab=37.36 E-value=1.8e+02 Score=29.26 Aligned_cols=59 Identities=14% Similarity=0.193 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCC--CcCCCCCCCCCCCCC--cHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 007482 463 AYEFVESMKKKGI--RVPGIGHRIKRGDNR--DKRVELLQKFARTHFPSVKYMEYAVQVETYT 521 (602)
Q Consensus 463 ~~~~v~~~~~~~~--~ipGfGH~v~~~~~~--DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~ 521 (602)
+++-|++..++|+ -+||.|.|+-..+++ ||=-..+..+.+..+.--+++++-.+|.+.+
T Consensus 93 aE~rI~eAm~~GeFdNLpG~GKPL~ldd~p~vp~e~r~~nRILknaG~lPpwIeL~KEI~~~i 155 (221)
T PLN03085 93 VEQRIWHSMEEGHFENLPGKGKPLNLSTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRGQI 155 (221)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 3455666677775 799999999754333 2324456777777777788998888877665
No 332
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=37.31 E-value=1.8e+02 Score=31.62 Aligned_cols=96 Identities=11% Similarity=0.066 Sum_probs=47.3
Q ss_pred CcEEEEeeCCcH----HHHHHHhcCCeEEEEEeCCCCCCc---cc----cccCcee--ecccccCCHHHHhhcCC-CccE
Q 007482 10 TTQALFYNYKQL----PIQRMLDFDFLCVAGIINPGAEGF---QK----LFFGQEE--IAIPVHSTVEAACAAHP-MADV 75 (602)
Q Consensus 10 ~s~avv~g~~~~----~~~~~~~~g~~~V~gv~~p~~~~~---~~----~~~g~~v--~G~~~y~sv~~i~~~~p-~vDl 75 (602)
+++.|+| .+|. +++.|++.|++++.-...+.+... .+ ...+-++ ..+.-..++.++..... ++|.
T Consensus 61 ~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~~D~ 139 (390)
T PLN02657 61 VTVLVVG-ATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDPVDV 139 (390)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCCCcE
Confidence 3555554 3333 778888899987543331211000 00 0001111 12222334444443210 2788
Q ss_pred EEEecCCh------------hhHHHHHHHhhCCCCcEEEEecC
Q 007482 76 FINFSSFR------------SAAASSMAALKQPTIRVVAIIAE 106 (602)
Q Consensus 76 avi~vp~~------------~~~~~~~e~~~~~gv~~~viis~ 106 (602)
+|.++... .....++++|.+.|++.+|.+|+
T Consensus 140 Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS 182 (390)
T PLN02657 140 VVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLSA 182 (390)
T ss_pred EEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEee
Confidence 77655321 01235678888788888887776
No 333
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=37.17 E-value=47 Score=36.81 Aligned_cols=84 Identities=17% Similarity=0.164 Sum_probs=54.3
Q ss_pred HHHHHHhcCCeE--EEEEeCCCCC-CccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhHHHHHHHhhCCCC
Q 007482 22 PIQRMLDFDFLC--VAGIINPGAE-GFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTI 98 (602)
Q Consensus 22 ~~~~~~~~g~~~--V~gv~~p~~~-~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~~e~~~~~gv 98 (602)
...++.+.+++. |+.-.|-|.. .|++.+ .+-.|+|+|++-.+ ..| +| .+...++.+.+.+.
T Consensus 120 LA~~lkk~~~kvllVaaD~~RpAA~eQL~~L--a~q~~v~~f~~~~~---~~P-v~----------Iak~al~~ak~~~~ 183 (451)
T COG0541 120 LAKYLKKKGKKVLLVAADTYRPAAIEQLKQL--AEQVGVPFFGSGTE---KDP-VE----------IAKAALEKAKEEGY 183 (451)
T ss_pred HHHHHHHcCCceEEEecccCChHHHHHHHHH--HHHcCCceecCCCC---CCH-HH----------HHHHHHHHHHHcCC
Confidence 777888888885 6666664332 344444 35578899988222 122 33 23456777777788
Q ss_pred cEEEEecCC---CCHHHHHHHHHHHH
Q 007482 99 RVVAIIAEG---VPEADTKQLIAYAR 121 (602)
Q Consensus 99 ~~~viis~G---f~E~~~~~l~~~a~ 121 (602)
..+||=|+| .-|.+.+||.++.+
T Consensus 184 DvvIvDTAGRl~ide~Lm~El~~Ik~ 209 (451)
T COG0541 184 DVVIVDTAGRLHIDEELMDELKEIKE 209 (451)
T ss_pred CEEEEeCCCcccccHHHHHHHHHHHh
Confidence 888888887 45667888887764
No 334
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=37.09 E-value=90 Score=36.07 Aligned_cols=29 Identities=10% Similarity=0.062 Sum_probs=18.7
Q ss_pred CCCCCcEEEEeeCCcH----HHHHHHhcCCeEEE
Q 007482 6 LFSKTTQALFYNYKQL----PIQRMLDFDFLCVA 35 (602)
Q Consensus 6 l~~p~s~avv~g~~~~----~~~~~~~~g~~~V~ 35 (602)
++..+++.|.|| +|. +++.|++.|++++.
T Consensus 77 ~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vva 109 (576)
T PLN03209 77 TKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRA 109 (576)
T ss_pred cCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEE
Confidence 345556666653 333 77888889998743
No 335
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=36.80 E-value=2.3e+02 Score=31.68 Aligned_cols=115 Identities=15% Similarity=0.103 Sum_probs=64.6
Q ss_pred EEecCChhhHHHHHHHhhCC--CCcEEEEecCCCCHH---HHHHHHHHHHh--------CCCeeEcCCcccccccCcccc
Q 007482 77 INFSSFRSAAASSMAALKQP--TIRVVAIIAEGVPEA---DTKQLIAYARS--------NNKVVIGPATVGGIQAGAFKI 143 (602)
Q Consensus 77 vi~vp~~~~~~~~~e~~~~~--gv~~~viis~Gf~E~---~~~~l~~~a~~--------~g~riiGPNc~G~~~~~~~~l 143 (602)
+|+=... .+..+++.+.++ ..+.+.|+|+..+|. |.+.+++.+++ .++.++-=||.|+-.....+.
T Consensus 66 ~VfGG~~-~L~~~I~~~~~~~~~p~~I~V~tTC~~eiIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs~~~G~ 144 (454)
T cd01973 66 AVFGGAK-RVEEGVLVLARRYPDLRVIPIITTCSTEIIGDDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKGSMVTGY 144 (454)
T ss_pred eEECcHH-HHHHHHHHHHHhcCCCCEEEEECCchHhhhccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCCCHHHHH
Confidence 3344333 455556655544 367889999999988 55555554432 278888889998865322111
Q ss_pred cccCCcccccccccCCCCCcEEEEe--cChhHHHHHHHHHHhcCCceeEEe
Q 007482 144 GDTAGTIDNIIHCKLYRPGSVGFVS--KSGGMSNELYNTIARVTDGIYEGI 192 (602)
Q Consensus 144 ~~~~~~~~~~~p~~~~~~G~valvS--QSG~l~~~~~~~~~~~g~G~s~~v 192 (602)
....-.+-..+....-+++.|-++. ++.+=..++-..+...|+-+..+.
T Consensus 145 ~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~~~~ 195 (454)
T cd01973 145 DEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEANILM 195 (454)
T ss_pred HHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEee
Confidence 0000011011111222467899985 443334677777777788776554
No 336
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=36.66 E-value=4.2e+02 Score=28.99 Aligned_cols=122 Identities=15% Similarity=0.074 Sum_probs=73.7
Q ss_pred HHHHHHHHHhCCCeeEcCCccc--ccccCcccccccCCcccccccc------------cCCCCCcEEEEecChhHHHHH-
Q 007482 113 TKQLIAYARSNNKVVIGPATVG--GIQAGAFKIGDTAGTIDNIIHC------------KLYRPGSVGFVSKSGGMSNEL- 177 (602)
Q Consensus 113 ~~~l~~~a~~~g~riiGPNc~G--~~~~~~~~l~~~~~~~~~~~p~------------~~~~~G~valvSQSG~l~~~~- 177 (602)
...+..++.+.++.+|.|.+-- +-+... . -.|....|. ..+..-.|++|.++...+...
T Consensus 116 ~~av~~~~~~~~ip~Is~~sts~~ls~~~~--~----~~~fR~~p~d~~~~~a~~~~l~~~~w~~vaii~~~~~~G~~~~ 189 (452)
T cd06362 116 SIQVANLLRLFKIPQISYASTSPELSDKTR--Y----DYFSRTVPPDSFQAQAMVDIVKAFNWTYVSTVASEGNYGEKGI 189 (452)
T ss_pred HHHHHHHhccccCcccccccCchhhccccc--c----CCEEEecCChHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHH
Confidence 3456678888999998885432 111111 0 011111111 123556899999987765443
Q ss_pred ---HHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHhcCC
Q 007482 178 ---YNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKV 243 (602)
Q Consensus 178 ---~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~~ 243 (602)
...+.+.|+-+......-... .+.++...+.-+......++|+++.. . .+...|++.+++...
T Consensus 190 ~~~~~~~~~~gi~i~~~~~~~~~~-~~~d~~~~l~~l~~~~~a~viil~~~-~-~~~~~~~~~a~~~g~ 255 (452)
T cd06362 190 EAFEKLAAERGICIAGSEKIPSSA-TEEEFDNIIRKLLSKPNARVVVLFCR-E-DDIRGLLAAAKRLNA 255 (452)
T ss_pred HHHHHHHHHCCeeEEEEEEcCCCC-CHHHHHHHHHHHhhcCCCeEEEEEcC-h-HHHHHHHHHHHHcCC
Confidence 345566676666555554321 14567777777776566899999887 3 677889998888654
No 337
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=36.65 E-value=1.4e+02 Score=33.05 Aligned_cols=108 Identities=15% Similarity=0.099 Sum_probs=58.2
Q ss_pred CCCCCcEEEEeeCCcH--HHHHHHh-cCCeEEEEEeCCCCCC---ccccccCceeecccccCCHHHHhhcCCCccEEEEe
Q 007482 6 LFSKTTQALFYNYKQL--PIQRMLD-FDFLCVAGIINPGAEG---FQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINF 79 (602)
Q Consensus 6 l~~p~s~avv~g~~~~--~~~~~~~-~g~~~V~gv~~p~~~~---~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~ 79 (602)
=|+|..+++.+|.++- .+--++. -|-.. =+-+|..++ +.+...|-++.=+.|..|.. +++ .
T Consensus 143 ~fdP~~~Vv~~G~T~ane~l~fcLadpgdaf--LvPtPyY~gfdrdl~~rTgveivpv~c~Ss~~------f~i-----t 209 (471)
T KOG0256|consen 143 KFDPERVVVTNGATSANETLMFCLADPGDAF--LVPTPYYPGFDRDLRWRTGVEIVPVHCSSSNG------FQI-----T 209 (471)
T ss_pred ccCccceEEecccchhhHHHHHHhcCCCcee--eecCCCCCcccccceeccCceEEEEEeecCCC------ccc-----c
Confidence 4899999999886664 4444444 22211 111232222 33333343333333332211 001 1
Q ss_pred cCChhhHHHHHHHhhC--CCCcEEEEecC----C--CCHHHHHHHHHHHHhCCCeeEc
Q 007482 80 SSFRSAAASSMAALKQ--PTIRVVAIIAE----G--VPEADTKQLIAYARSNNKVVIG 129 (602)
Q Consensus 80 vp~~~~~~~~~e~~~~--~gv~~~viis~----G--f~E~~~~~l~~~a~~~g~riiG 129 (602)
| .+++++++++.+ ..||+++|+.- | ++.+....+++.|.++++++|=
T Consensus 210 v---~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~ 264 (471)
T KOG0256|consen 210 V---EALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVIS 264 (471)
T ss_pred H---HHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEe
Confidence 1 234556665554 45888888763 2 4455677889999999999874
No 338
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=36.32 E-value=61 Score=33.98 Aligned_cols=89 Identities=11% Similarity=-0.079 Sum_probs=45.0
Q ss_pred cEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCC-cc-c--------cc--cC----c----eeecccccCCHHHHhh
Q 007482 11 TQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEG-FQ-K--------LF--FG----Q----EEIAIPVHSTVEAACA 68 (602)
Q Consensus 11 s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~-~~-~--------~~--~g----~----~v~G~~~y~sv~~i~~ 68 (602)
+|+||| |..|. +..++...|++++ .++ +.... +. . .+ .| . -...+....+++++..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~-v~d-~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVR-LWD-ADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeE-EEe-CCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 688887 34444 7788888999852 333 32110 00 0 00 00 0 0011245567776544
Q ss_pred cCCCccEEEEecCChh-hHHHHHHHhhCCCCcEEEEe
Q 007482 69 AHPMADVFINFSSFRS-AAASSMAALKQPTIRVVAII 104 (602)
Q Consensus 69 ~~p~vDlavi~vp~~~-~~~~~~e~~~~~gv~~~vii 104 (602)
+.|+++.++|... ....+++++.+..-+.+++.
T Consensus 82 ---~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ 115 (308)
T PRK06129 82 ---DADYVQESAPENLELKRALFAELDALAPPHAILA 115 (308)
T ss_pred ---CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEE
Confidence 4799999998752 23445555543222334444
No 339
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=36.06 E-value=68 Score=32.76 Aligned_cols=16 Identities=13% Similarity=0.034 Sum_probs=12.7
Q ss_pred CCCCEEEEEeCcCccC
Q 007482 243 VNKPVVAWVSGTCARL 258 (602)
Q Consensus 243 ~~KPVv~~k~Gr~~~g 258 (602)
..||||+..-|..-.|
T Consensus 94 ~~kPvIAav~G~a~Gg 109 (258)
T PRK09076 94 FRGVSIAAINGYAMGG 109 (258)
T ss_pred CCCCEEEEECCEEecH
Confidence 6899999998876543
No 340
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.64 E-value=85 Score=34.54 Aligned_cols=55 Identities=13% Similarity=0.044 Sum_probs=43.8
Q ss_pred eeecccccCCHHHHhhcCCCccEEEEecCChhhHHHHHHHhhC---CCCcEEEEecCCCCHH
Q 007482 53 EEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQ---PTIRVVAIIAEGVPEA 111 (602)
Q Consensus 53 ~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~~e~~~~---~gv~~~viis~Gf~E~ 111 (602)
++.=-.+|...+++.+ +-|..|++||+. +.-++++++.. +++|.+|++|..|+-.
T Consensus 67 ~~~id~~~~~~~~i~g---~WdtlILavtaD-AY~~VL~ql~~~~L~~vk~iVLvSPtfGS~ 124 (429)
T PF10100_consen 67 ECTIDHVFQDYEEIEG---EWDTLILAVTAD-AYLDVLQQLPWEVLKRVKSIVLVSPTFGSH 124 (429)
T ss_pred eEEhhHhhcCHHHhcc---cccEEEEEechH-HHHHHHHhcCHHHHhhCCEEEEECcccchH
Confidence 3333468999999754 579999999997 58888887653 6899999999999876
No 341
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=35.58 E-value=47 Score=29.28 Aligned_cols=44 Identities=25% Similarity=0.265 Sum_probs=32.0
Q ss_pred hHHHHHHHhhCCCCcEEEEecCCCCHH-HHHHHHHHHHhCCCeeEcCCc
Q 007482 85 AAASSMAALKQPTIRVVAIIAEGVPEA-DTKQLIAYARSNNKVVIGPAT 132 (602)
Q Consensus 85 ~~~~~~e~~~~~gv~~~viis~Gf~E~-~~~~l~~~a~~~g~riiGPNc 132 (602)
..+.+++-|.+.+|..+||= ||. +..-+.+..++.|++++||+-
T Consensus 50 d~~~l~~~a~~~~idlvvvG----PE~pL~~Gl~D~l~~~gi~vfGP~k 94 (100)
T PF02844_consen 50 DPEELADFAKENKIDLVVVG----PEAPLVAGLADALRAAGIPVFGPSK 94 (100)
T ss_dssp -HHHHHHHHHHTTESEEEES----SHHHHHTTHHHHHHHTT-CEES--H
T ss_pred CHHHHHHHHHHcCCCEEEEC----ChHHHHHHHHHHHHHCCCcEECcCH
Confidence 36788888888889877773 455 677788888999999999963
No 342
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=35.46 E-value=5.4e+02 Score=26.94 Aligned_cols=171 Identities=13% Similarity=0.173 Sum_probs=92.3
Q ss_pred ecc-cccCCHHHHhhcCCCccEEEEecCChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHh-CCCeeEc---
Q 007482 55 IAI-PVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARS-NNKVVIG--- 129 (602)
Q Consensus 55 ~G~-~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~-~g~riiG--- 129 (602)
.|+ .+..+++++++ -+.+ .++++.+.+++.+++.++|++ ++=-|.-|=...+..+.+++++ +-+-|+|
T Consensus 51 ~Gv~~~v~~~~~v~~----~~~V--iirAHGv~~~~~~~~~~~gl~-viDaTCP~V~kv~~~v~~~~~~Gy~iiiiG~~~ 123 (280)
T TIGR00216 51 RGVFFFLEDLDEVAA----GDTV--IIRAHGVPPEVREELEKKGLE-VIDATCPLVTKVHNAVKKYAKEGYHVILIGKKN 123 (280)
T ss_pred CCCEEeecCcccCCC----CCEE--EEeCCCCCHHHHHHHHHCCCe-EEeCCCcccHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 564 55567776532 1333 356777789999999999987 3322334444467777777776 4577889
Q ss_pred -CCcccccccCcccccccCCcccccccccCCCCCcEEEEecChhH---HHHHHHHHHhcC--CceeEEeeccCC-CCCCC
Q 007482 130 -PATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGM---SNELYNTIARVT--DGIYEGIAIGGD-VFPGS 202 (602)
Q Consensus 130 -PNc~G~~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQSG~l---~~~~~~~~~~~g--~G~s~~vs~Gn~-~~~dv 202 (602)
|...|+........ .+..+... . .....+.+++++||.--- ...+.+.+.++. .-...+ |. ++.-.
T Consensus 124 HpEv~gi~g~~~~~~-~vv~~~~d-~-~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~----nTIC~AT~ 196 (280)
T TIGR00216 124 HPEVIGTRGYAPDKA-IVVETLED-L-ENFKVEDLLGVVSQTTLSQEDTKEIVAELKARVPQKEVPVF----NTICYATQ 196 (280)
T ss_pred CCeeeeeccCcCCCE-EEECCHHH-H-HhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCCC----CCcccccH
Confidence 77777765432010 00011100 0 011135779999986543 344556666544 222111 21 10011
Q ss_pred CHHHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHhc
Q 007482 203 TLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQG 241 (602)
Q Consensus 203 ~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~ 241 (602)
+=-+.+.-|... +.++++.+=-.-.|.+++.+.+++.
T Consensus 197 ~RQ~a~~~la~~--vD~miVVGg~nSsNT~rL~ei~~~~ 233 (280)
T TIGR00216 197 NRQDAVKELAPE--VDLMIVIGGKNSSNTTRLYEIAEEH 233 (280)
T ss_pred HHHHHHHHHHhh--CCEEEEECCCCCchHHHHHHHHHHh
Confidence 122334444443 6666665543445678999988874
No 343
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=35.32 E-value=6.4e+02 Score=27.73 Aligned_cols=212 Identities=17% Similarity=0.136 Sum_probs=105.0
Q ss_pred HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHh-h---c----CCCccEEEEecCChhhHHH-----
Q 007482 22 PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAAC-A---A----HPMADVFINFSSFRSAAAS----- 88 (602)
Q Consensus 22 ~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~-~---~----~p~vDlavi~vp~~~~~~~----- 88 (602)
.++.|++.|+++---++ +...+......-+.+.|.|+|.+.-+-. + + ....|+.|| +|+....-+
T Consensus 25 lv~~L~~~g~~V~vv~T-~~A~~fi~~~~l~~l~~~~V~~~~~~~~~~~~~~hi~l~~~aD~~vV-aPaTaNtlaKiA~G 102 (399)
T PRK05579 25 LVRRLRKAGADVRVVMT-EAAKKFVTPLTFQALSGNPVSTDLWDPAAEAAMGHIELAKWADLVLI-APATADLIAKLAHG 102 (399)
T ss_pred HHHHHHhCCCEEEEEEC-HhHHHHHhHHHHHHhhCCceEccccccccCCCcchhhcccccCEEEE-eeCCHHHHHHHHcc
Confidence 77888888887521222 3221111111113456677776532210 0 0 012687766 576532211
Q ss_pred -----HHHHhhCCCCcEEEEecCC--C--CHHHHHHHHHHHHhCCCeeEcCCcccccccCcccccccCCc------cccc
Q 007482 89 -----SMAALKQPTIRVVAIIAEG--V--PEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGT------IDNI 153 (602)
Q Consensus 89 -----~~e~~~~~gv~~~viis~G--f--~E~~~~~l~~~a~~~g~riiGPNc~G~~~~~~~~l~~~~~~------~~~~ 153 (602)
+...+.+.+.+.+++.+-. . ....++-+ +..++.|..|++|.+ |++..+..+.|-+.-. ....
T Consensus 103 iaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl-~~L~~~G~~ii~P~~-g~la~~~~g~gr~~~~~~I~~~~~~~ 180 (399)
T PRK05579 103 IADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNL-ATLRSRGVEIIGPAS-GRLACGDVGPGRMAEPEEIVAAAERA 180 (399)
T ss_pred cCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHH-HHHHHCCCEEECCCC-ccccCCCcCCCCCCCHHHHHHHHHHH
Confidence 1111222345555554322 1 11134444 445678999999975 6655443222110000 0000
Q ss_pred ccccCCCCCcEEEEec-----------------ChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCC
Q 007482 154 IHCKLYRPGSVGFVSK-----------------SGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQ 216 (602)
Q Consensus 154 ~p~~~~~~G~valvSQ-----------------SG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~ 216 (602)
+.. ..-.|...+|+- ||.++.++...+.++|--+.. -.|+.. +. .|.
T Consensus 181 ~~~-~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~--v~~~~~---~~----------~~~ 244 (399)
T PRK05579 181 LSP-KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTL--VSGPVN---LP----------TPA 244 (399)
T ss_pred hhh-cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEE--eCCCcc---cc----------CCC
Confidence 100 113688888886 477999999999888765432 234332 11 121
Q ss_pred ccEEEEEEecCCCcHHHHHHHHHhcCCCCCEEEEEeCcCccC
Q 007482 217 VKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARL 258 (602)
Q Consensus 217 t~~I~ly~E~g~~~~~~f~~~~r~~~~~KPVv~~k~Gr~~~g 258 (602)
.+ ..- .+.+.+...+++.+...+..+++.-+|-+.-.
T Consensus 245 -~~---~~~-dv~~~~~~~~~v~~~~~~~DilI~~Aav~d~~ 281 (399)
T PRK05579 245 -GV---KRI-DVESAQEMLDAVLAALPQADIFIMAAAVADYR 281 (399)
T ss_pred -Cc---EEE-ccCCHHHHHHHHHHhcCCCCEEEEcccccccc
Confidence 11 112 45677777777765434467888887766543
No 344
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=35.28 E-value=2.3e+02 Score=28.31 Aligned_cols=28 Identities=14% Similarity=0.037 Sum_probs=17.9
Q ss_pred CCCcEEEEee--CCcH-HHHHHHhcCCeEEE
Q 007482 8 SKTTQALFYN--YKQL-PIQRMLDFDFLCVA 35 (602)
Q Consensus 8 ~p~s~avv~g--~~~~-~~~~~~~~g~~~V~ 35 (602)
.++++.|+|+ ..|+ +++.|++.|+++++
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~ 46 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKA 46 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCCEEEE
Confidence 4556666653 2233 77888888998643
No 345
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=35.26 E-value=4.5e+02 Score=29.13 Aligned_cols=128 Identities=13% Similarity=0.080 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhCCCeeEcCCcc--cccccCcccccccCCcccccccc------------cCCCCCcEEEEecChhHHHHH
Q 007482 112 DTKQLIAYARSNNKVVIGPATV--GGIQAGAFKIGDTAGTIDNIIHC------------KLYRPGSVGFVSKSGGMSNEL 177 (602)
Q Consensus 112 ~~~~l~~~a~~~g~riiGPNc~--G~~~~~~~~l~~~~~~~~~~~p~------------~~~~~G~valvSQSG~l~~~~ 177 (602)
....+..++...++..|.|.+- .+-+... . -.|....|. ..+.--.|++|......+...
T Consensus 117 ~s~ava~~~~~~~IP~Is~~sts~~Ls~~~~--~----~~ffRt~psd~~qa~ai~~ll~~~~W~~Vaii~~~~~yG~~~ 190 (458)
T cd06375 117 VSIQVANLLRLFQIPQISYASTSAKLSDKSR--Y----DYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETG 190 (458)
T ss_pred HHHHHHHHhhhccccceeeccCChhhccccc--C----CCeEEecCCcHHHHHHHHHHHHHCCCeEEEEEEeCchHHHHH
Confidence 4445667888889998887543 2211111 0 111111111 123556899998877655544
Q ss_pred H----HHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHhcCCCCCEE
Q 007482 178 Y----NTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVV 248 (602)
Q Consensus 178 ~----~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~~~KPVv 248 (602)
+ ..+.+.|+-+.....+-... .+.++...+.-+..+++.++|+++.. ..+...|++.+++....++.|
T Consensus 191 ~~~~~~~~~~~gi~i~~~~~i~~~~-~~~d~~~~l~~l~~~~~a~vVvl~~~--~~~~~~ll~~a~~~g~~~~wi 262 (458)
T cd06375 191 IEAFEQEARLRNICIATSEKVGRSA-DRKSYDSVIRKLLQKPNARVVVLFTR--SEDARELLAAAKRLNASFTWV 262 (458)
T ss_pred HHHHHHHHHHCCeeEEEEEEecCCC-CHHHHHHHHHHHhccCCCEEEEEecC--hHHHHHHHHHHHHcCCcEEEE
Confidence 3 44555666555554453321 14567777777777788999999987 366788888888865443333
No 346
>PLN02306 hydroxypyruvate reductase
Probab=35.14 E-value=1.4e+02 Score=32.69 Aligned_cols=111 Identities=14% Similarity=0.082 Sum_probs=60.2
Q ss_pred CCCCcEEEEe-eCCcH-HHHHHH-hcCCeEEEEEeCCCCCCccc---cccCce-------eecccccCCHHHHhhcCCCc
Q 007482 7 FSKTTQALFY-NYKQL-PIQRML-DFDFLCVAGIINPGAEGFQK---LFFGQE-------EIAIPVHSTVEAACAAHPMA 73 (602)
Q Consensus 7 ~~p~s~avv~-g~~~~-~~~~~~-~~g~~~V~gv~~p~~~~~~~---~~~g~~-------v~G~~~y~sv~~i~~~~p~v 73 (602)
+.=+++.||| |.-|+ ..+.+. .+|.+++ +.+ |....+.. ..+|.. -.+...+.++.|+.. +.
T Consensus 163 L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~-~~d-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~---~s 237 (386)
T PLN02306 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYD-LYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLR---EA 237 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCEEE-EEC-CCCchhhhhhhhhhcccccccccccccccccCCHHHHHh---hC
Confidence 4456788886 55566 444444 5888764 444 42111000 011100 011223468999886 46
Q ss_pred cEEEEecCChhhHH-----HHHHHhhCCCCcEEEEecCCCCHH-HHHHHHHHHHhCCCe
Q 007482 74 DVFINFSSFRSAAA-----SSMAALKQPTIRVVAIIAEGVPEA-DTKQLIAYARSNNKV 126 (602)
Q Consensus 74 Dlavi~vp~~~~~~-----~~~e~~~~~gv~~~viis~Gf~E~-~~~~l~~~a~~~g~r 126 (602)
|++++.+|...... ..++.+. +.+++|-.+=++. +++.|.+..++..+.
T Consensus 238 DiV~lh~Plt~~T~~lin~~~l~~MK----~ga~lIN~aRG~lVDe~AL~~AL~sg~i~ 292 (386)
T PLN02306 238 DVISLHPVLDKTTYHLINKERLALMK----KEAVLVNASRGPVIDEVALVEHLKANPMF 292 (386)
T ss_pred CEEEEeCCCChhhhhhcCHHHHHhCC----CCeEEEECCCccccCHHHHHHHHHhCCee
Confidence 99999998653332 3344443 3455555554444 788888887775443
No 347
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=35.00 E-value=2.2e+02 Score=31.46 Aligned_cols=105 Identities=10% Similarity=0.066 Sum_probs=58.8
Q ss_pred hHHHHHHH-hhCCCCcEEEEecCCCCHH---HHHHHHHHHHhC-----CCeeEcCCcccccccCcccccc-cCCcccccc
Q 007482 85 AAASSMAA-LKQPTIRVVAIIAEGVPEA---DTKQLIAYARSN-----NKVVIGPATVGGIQAGAFKIGD-TAGTIDNII 154 (602)
Q Consensus 85 ~~~~~~e~-~~~~gv~~~viis~Gf~E~---~~~~l~~~a~~~-----g~riiGPNc~G~~~~~~~~l~~-~~~~~~~~~ 154 (602)
.+..++++ +.+...+.+.|+|+..+|. |.+.+++.+++. +++|+.=||.|+-.....+... +.+......
T Consensus 72 ~L~~ai~~~~~~~~p~~I~v~ttC~~~iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~gs~~~G~~~a~~al~~~l~ 151 (435)
T cd01974 72 NLIDGLKNAYAVYKPDMIAVSTTCMAEVIGDDLNAFIKNAKNKGSIPADFPVPFANTPSFVGSHITGYDNMVKGILTHLT 151 (435)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHhhhhccHHHHHHHHHHhccCCCCCeEEEecCCCCccCHHHHHHHHHHHHHHHHh
Confidence 34444444 4444688899999999998 555555555443 7889999998886432211000 000011011
Q ss_pred ccc--CCCCCcEEEEec--ChhH-HHHHHHHHHhcCCcee
Q 007482 155 HCK--LYRPGSVGFVSK--SGGM-SNELYNTIARVTDGIY 189 (602)
Q Consensus 155 p~~--~~~~G~valvSQ--SG~l-~~~~~~~~~~~g~G~s 189 (602)
+.. ...++.|-++.. +..= ..++...+.+.|+..-
T Consensus 152 ~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~ 191 (435)
T cd01974 152 EGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYT 191 (435)
T ss_pred cccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEE
Confidence 111 135778988842 2111 4577777777777663
No 348
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=34.82 E-value=1e+02 Score=31.40 Aligned_cols=75 Identities=9% Similarity=0.071 Sum_probs=40.6
Q ss_pred CCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChh------------
Q 007482 18 YKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRS------------ 84 (602)
Q Consensus 18 ~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~------------ 84 (602)
+-|+ +++.|++.|+.++.... ..+ ..+.-+.++.++.... ++|.+|-+.....
T Consensus 8 fiG~~l~~~L~~~g~~v~~~~~-~~~------------~Dl~~~~~l~~~~~~~-~~d~Vih~A~~~~~~~~~~~~~~~~ 73 (306)
T PLN02725 8 LVGSAIVRKLEALGFTNLVLRT-HKE------------LDLTRQADVEAFFAKE-KPTYVILAAAKVGGIHANMTYPADF 73 (306)
T ss_pred cccHHHHHHHHhCCCcEEEeec-ccc------------CCCCCHHHHHHHHhcc-CCCEEEEeeeeecccchhhhCcHHH
Confidence 3344 78888888887553332 111 2234455676665543 3688776642100
Q ss_pred ------hHHHHHHHhhCCCCcEEEEecC
Q 007482 85 ------AAASSMAALKQPTIRVVAIIAE 106 (602)
Q Consensus 85 ------~~~~~~e~~~~~gv~~~viis~ 106 (602)
....++++|.+.+++.+|.+|+
T Consensus 74 ~~~n~~~~~~ll~~~~~~~~~~~i~~SS 101 (306)
T PLN02725 74 IRENLQIQTNVIDAAYRHGVKKLLFLGS 101 (306)
T ss_pred HHHHhHHHHHHHHHHHHcCCCeEEEeCc
Confidence 0223566666666666666554
No 349
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=34.62 E-value=4.5e+02 Score=25.73 Aligned_cols=170 Identities=8% Similarity=0.027 Sum_probs=80.3
Q ss_pred cCCHHHHhhcCCCccEEEEecCC-hhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCccc----
Q 007482 60 HSTVEAACAAHPMADVFINFSSF-RSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVG---- 134 (602)
Q Consensus 60 y~sv~~i~~~~p~vDlavi~vp~-~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc~G---- 134 (602)
+..+++...+. ..++.+..... .......++.+.+.++.++++.++...+ .+.+.+++.++.++--|...
T Consensus 18 ~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~----~~~~~l~~~~ipvV~~~~~~~~~~ 92 (268)
T cd06298 18 ARGIDDIATMY-KYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGGKISE----EHREEFKRSPTPVVLAGSVDEDNE 92 (268)
T ss_pred HHHHHHHHHHc-CCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCCCCcH----HHHHHHhcCCCCEEEEccccCCCC
Confidence 33455544444 36776654321 1122456666666899988887654443 34455566788766554321
Q ss_pred --ccccCcccccccCCcccccccccCCCCCcEEEEecChh-H------HHHHHHHHHhcCCceeE-EeeccCCCCCCCCH
Q 007482 135 --GIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGG-M------SNELYNTIARVTDGIYE-GIAIGGDVFPGSTL 204 (602)
Q Consensus 135 --~~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQSG~-l------~~~~~~~~~~~g~G~s~-~vs~Gn~~~~dv~~ 204 (602)
.+.+.....+ ......+- ....++|++++.+-. . .....+.+.+.|+.+.. .+-.++.. .-..
T Consensus 93 ~~~v~~d~~~~~---~~~~~~l~--~~g~~~i~~l~~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~--~~~~ 165 (268)
T cd06298 93 LPSVNIDYKKAA---FEATELLI--KNGHKKIAFISGPLEDSINGDERLAGYKEALSEANIEFDESLIFEGDYT--YESG 165 (268)
T ss_pred CCEEEECcHHHH---HHHHHHHH--HcCCceEEEEeCCcccccchhHHHHHHHHHHHHcCCCCCHHHeEeCCCC--hhHH
Confidence 1111110000 00000000 124678999963322 1 12334556666655422 12222221 1122
Q ss_pred HHHHHHh-hcCCCccEEEEEEecCCCcHHHHHHHHHhcCCCC
Q 007482 205 SDHILRF-NNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNK 245 (602)
Q Consensus 205 ~d~l~~l-~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~~~K 245 (602)
.+.++.+ ...| .++|+. . +-.....+++++++...+.
T Consensus 166 ~~~~~~~l~~~~-~~ai~~--~-~d~~a~~~~~~l~~~g~~v 203 (268)
T cd06298 166 YELAEELLEDGK-PTAAFV--T-DDELAIGILNAAQDAGLKV 203 (268)
T ss_pred HHHHHHHhcCCC-CCEEEE--c-CcHHHHHHHHHHHHcCCCC
Confidence 3444444 4344 666554 4 3344567888888755443
No 350
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=34.35 E-value=53 Score=35.29 Aligned_cols=144 Identities=17% Similarity=0.170 Sum_probs=84.7
Q ss_pred HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhH--HHHHHHhhCCCCc
Q 007482 22 PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAA--ASSMAALKQPTIR 99 (602)
Q Consensus 22 ~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~--~~~~e~~~~~gv~ 99 (602)
..+...+.|-.++.... .. ++|.| .+..+.++-... +++=|++= .+.+ -.+.|+- ..|..
T Consensus 144 iA~~Ye~~GA~aISVLT---d~---~~F~G-------s~e~L~~vr~~~--v~lPvLrK--DFIID~yQI~eAr-~~GAD 205 (338)
T PLN02460 144 IAQAYEKGGAACLSVLT---DE---KYFQG-------SFENLEAIRNAG--VKCPLLCK--EFIVDAWQIYYAR-SKGAD 205 (338)
T ss_pred HHHHHHhCCCcEEEEec---Cc---CcCCC-------CHHHHHHHHHcC--CCCCEeec--cccCCHHHHHHHH-HcCCC
Confidence 55666667776554443 22 34555 233344432210 45545431 2222 2445544 48999
Q ss_pred EEEEecCCCCHHHHHHHHHHHHhCCCeeE----------------cCCcccccccCc--ccccccCCcccccccc---cC
Q 007482 100 VVAIIAEGVPEADTKQLIAYARSNNKVVI----------------GPATVGGIQAGA--FKIGDTAGTIDNIIHC---KL 158 (602)
Q Consensus 100 ~~viis~Gf~E~~~~~l~~~a~~~g~rii----------------GPNc~G~~~~~~--~~l~~~~~~~~~~~p~---~~ 158 (602)
++.+|.+=..+.+.+++.++|++.||.++ |+.-+||-|-+. +.+. ++.+. ...+. ..
T Consensus 206 AVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vD-l~~t~-~L~~~~~~~~ 283 (338)
T PLN02460 206 AILLIAAVLPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVD-ISNTK-KLLEGERGEQ 283 (338)
T ss_pred cHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceEC-HHHHH-HHhhhccccc
Confidence 99999998888888999999999998643 888899877543 2211 01111 11110 02
Q ss_pred CCCCcEEEEecChhHHHHHHHHHHhcC
Q 007482 159 YRPGSVGFVSKSGGMSNELYNTIARVT 185 (602)
Q Consensus 159 ~~~G~valvSQSG~l~~~~~~~~~~~g 185 (602)
.+|-++-+||-||=-+.+=+..+.+.|
T Consensus 284 i~~~~~~~VsESGI~t~~Dv~~l~~~G 310 (338)
T PLN02460 284 IREKGIIVVGESGLFTPDDVAYVQNAG 310 (338)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHCC
Confidence 334678899999988877666666554
No 351
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=34.32 E-value=2e+02 Score=29.49 Aligned_cols=26 Identities=8% Similarity=-0.139 Sum_probs=17.9
Q ss_pred CCcEEEEeeCC-cH-HHHHHHhcCCeEE
Q 007482 9 KTTQALFYNYK-QL-PIQRMLDFDFLCV 34 (602)
Q Consensus 9 p~s~avv~g~~-~~-~~~~~~~~g~~~V 34 (602)
++.+-|+||.+ +| +++.|.+.|+.++
T Consensus 2 ~~~IlvlgGT~egr~la~~L~~~g~~v~ 29 (248)
T PRK08057 2 MPRILLLGGTSEARALARALAAAGVDIV 29 (248)
T ss_pred CceEEEEechHHHHHHHHHHHhCCCeEE
Confidence 45677888855 34 6667777888764
No 352
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=34.29 E-value=3.3e+02 Score=28.23 Aligned_cols=85 Identities=9% Similarity=0.029 Sum_probs=49.8
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEE-EEEec--CCCc-HHHHH
Q 007482 160 RPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMV-VLGEL--GGRD-EYSLV 235 (602)
Q Consensus 160 ~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~-ly~E~--g~~~-~~~f~ 235 (602)
.+|.-.++...|..+..+...+...|.-+.. +...... .++..++.+.+.++++++.++ .+.|- |... -+++.
T Consensus 72 ~~~~~vi~~~~~~~~~~~~~~a~~~g~~~~~-i~~~~~~--~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~ 148 (355)
T TIGR03301 72 PRDGKLLVLINGAYGERLAKICEYLGIPHTD-LNFSEYE--PPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIA 148 (355)
T ss_pred CCCCeEEEECCCchhhHHHHHHHHcCCceEE-EecCCCC--CCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHH
Confidence 4556667777777665444455666766544 3443333 677888888888777776664 34541 2222 35666
Q ss_pred HHHHhcCCCCCEEE
Q 007482 236 EALKQGKVNKPVVA 249 (602)
Q Consensus 236 ~~~r~~~~~KPVv~ 249 (602)
+.+++ .+.++|+
T Consensus 149 ~l~~~--~~~~liv 160 (355)
T TIGR03301 149 KVARS--HGAVLIV 160 (355)
T ss_pred HHHHH--cCCEEEE
Confidence 67765 3455443
No 353
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=34.27 E-value=76 Score=32.45 Aligned_cols=55 Identities=5% Similarity=-0.002 Sum_probs=33.4
Q ss_pred CccEEEEecCChhhHHHHHHHhhC-CCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeE
Q 007482 72 MADVFINFSSFRSAAASSMAALKQ-PTIRVVAIIAEGVPEADTKQLIAYARSNNKVVI 128 (602)
Q Consensus 72 ~vDlavi~vp~~~~~~~~~e~~~~-~gv~~~viis~Gf~E~~~~~l~~~a~~~g~rii 128 (602)
+.|++|+|+|... ...++++... .+-..+|+=.+++...-.+.+.+... .+.+++
T Consensus 45 ~~DlvvlavP~~~-~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~-~~~~~v 100 (258)
T PF02153_consen 45 DADLVVLAVPVSA-IEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLP-EGVRFV 100 (258)
T ss_dssp CCSEEEE-S-HHH-HHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHT-SSGEEE
T ss_pred CCCEEEEcCCHHH-HHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcC-ccccee
Confidence 4799999999975 7888888875 44556666677887765555555444 444544
No 354
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=34.03 E-value=1.1e+02 Score=34.19 Aligned_cols=138 Identities=16% Similarity=0.118 Sum_probs=89.0
Q ss_pred HHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeE---------------cCCcccccccCcccccccCCcccc
Q 007482 88 SSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVI---------------GPATVGGIQAGAFKIGDTAGTIDN 152 (602)
Q Consensus 88 ~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~rii---------------GPNc~G~~~~~~~~l~~~~~~~~~ 152 (602)
.+.|+.. .|..++.+|.+=+++.+..+|+++|++.||-.+ |+.-+|+-|.+...+ ......
T Consensus 124 QI~ea~~-~GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNnRdL~t~---~vd~~~ 199 (454)
T PRK09427 124 QIYLARY-YGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINNRNLRDL---SIDLNR 199 (454)
T ss_pred HHHHHHH-cCCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeCCCCccc---eECHHH
Confidence 4555554 899999999998888888899999999998755 888889766543111 011110
Q ss_pred cccccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHH
Q 007482 153 IIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEY 232 (602)
Q Consensus 153 ~~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~ 232 (602)
.....+.-|..+-+||-||=-+.+=+..+.. | ...|=+|......-+..+.+.-|... .+|+. |+++++
T Consensus 200 ~~~l~~~ip~~~~~vseSGI~t~~d~~~~~~---~-~davLiG~~lm~~~d~~~~~~~L~~~-~vKIC------Git~~e 268 (454)
T PRK09427 200 TRELAPLIPADVIVISESGIYTHAQVRELSP---F-ANGFLIGSSLMAEDDLELAVRKLILG-ENKVC------GLTRPQ 268 (454)
T ss_pred HHHHHhhCCCCcEEEEeCCCCCHHHHHHHHh---c-CCEEEECHHHcCCCCHHHHHHHHhcc-ccccC------CCCCHH
Confidence 1001123467899999999877665555532 3 44556666654455666666666442 45554 888877
Q ss_pred HHHHHHHh
Q 007482 233 SLVEALKQ 240 (602)
Q Consensus 233 ~f~~~~r~ 240 (602)
....+++.
T Consensus 269 da~~a~~~ 276 (454)
T PRK09427 269 DAKAAYDA 276 (454)
T ss_pred HHHHHHhC
Confidence 77666654
No 355
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=34.00 E-value=93 Score=31.65 Aligned_cols=47 Identities=17% Similarity=0.093 Sum_probs=27.9
Q ss_pred CCCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHHHHHHHcCCcc
Q 007482 242 KVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVV 293 (602)
Q Consensus 242 ~~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~ 293 (602)
...||||+..-|..-.| +-.-+..+-=.++.++ ..|.--.-+.|++.
T Consensus 89 ~~~kPvIaav~G~a~Gg-G~~lalacD~~ia~~~----a~f~~pe~~~Gl~p 135 (254)
T PRK08252 89 PPRKPLIAAVEGYALAG-GFELALACDLIVAARD----AKFGLPEVKRGLVA 135 (254)
T ss_pred cCCCCEEEEECCEEehH-HHHHHHhCCEEEEeCC----CEEeCchhhcCCCC
Confidence 36899999998877543 2333444434445444 44444455677664
No 356
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=33.73 E-value=4.4e+02 Score=28.95 Aligned_cols=133 Identities=16% Similarity=0.181 Sum_probs=65.7
Q ss_pred EecCChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCe---e--EcCCcccccccCccccc-ccCCccc
Q 007482 78 NFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV---V--IGPATVGGIQAGAFKIG-DTAGTID 151 (602)
Q Consensus 78 i~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~r---i--iGPNc~G~~~~~~~~l~-~~~~~~~ 151 (602)
|...+.-.-.++--.|...|+|..|++.+..+....+ ..+.+|-. + .|.+.-.-+.-.. .+- ..+..|.
T Consensus 68 v~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~----~~~~~GA~vv~v~~~g~~~~~a~~~a~-~~~~~~g~~~~ 142 (409)
T TIGR02079 68 VCASAGNHAQGFAYACRHLGVHGTVFMPATTPKQKID----RVKIFGGEFIEIILVGDTFDQCAAAAR-EHVEDHGGTFI 142 (409)
T ss_pred EEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHH----HHHHcCCCeeEEEEeCCCHHHHHHHHH-HHHHhcCCEEe
Confidence 3333332345566667779999999999887754333 34566642 2 3432111111000 000 0011111
Q ss_pred ccccccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhc-CCCccEEEEEEecCCC
Q 007482 152 NIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNN-IPQVKMMVVLGELGGR 229 (602)
Q Consensus 152 ~~~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~-Dp~t~~I~ly~E~g~~ 229 (602)
.| .-.|-.++ .| |+++.++++.+.+. -=..++++|+-. ++.=+..+|.+ +|++|+|.+--| +..
T Consensus 143 --~~--~~~~~~~~--g~-~ti~~Ei~~q~~~~--~D~vv~pvG~GG----~~~Gia~~~k~~~p~~~vigVep~-~~~ 207 (409)
T TIGR02079 143 --PP--FDDPRIIE--GQ-GTVAAEILDQLPEK--PDYVVVPVGGGG----LISGLTTYLAGTSPKTKIIGVEPE-GAP 207 (409)
T ss_pred --CC--CCCHhHhh--hh-HHHHHHHHHhcCCC--CCEEEEEecHhH----HHHHHHHHHHHhCCCCEEEEEEeC-CCC
Confidence 01 00122221 24 78888888765421 223456666532 23333344443 799999999888 544
No 357
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=33.72 E-value=33 Score=35.36 Aligned_cols=93 Identities=15% Similarity=0.178 Sum_probs=61.6
Q ss_pred HHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCee---------------EcCCcccccccCcccccccCCcccccc
Q 007482 90 MAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVV---------------IGPATVGGIQAGAFKIGDTAGTIDNII 154 (602)
Q Consensus 90 ~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~ri---------------iGPNc~G~~~~~~~~l~~~~~~~~~~~ 154 (602)
++++...|..++.+|.+=..+...++|.+.|++.||-+ +|+.-+|+-|.+-..+ ........
T Consensus 122 I~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf---~vdl~~t~ 198 (254)
T COG0134 122 IYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTL---EVDLETTE 198 (254)
T ss_pred HHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchh---eecHHHHH
Confidence 33344589999999998888888889999999999865 3888888876553111 01111000
Q ss_pred cccCCCCCcEEEEecChhHHHHHHHHHHhcC
Q 007482 155 HCKLYRPGSVGFVSKSGGMSNELYNTIARVT 185 (602)
Q Consensus 155 p~~~~~~G~valvSQSG~l~~~~~~~~~~~g 185 (602)
...+..|..+-+||-||-.+.+=+..+...|
T Consensus 199 ~la~~~p~~~~~IsESGI~~~~dv~~l~~~g 229 (254)
T COG0134 199 KLAPLIPKDVILISESGISTPEDVRRLAKAG 229 (254)
T ss_pred HHHhhCCCCcEEEecCCCCCHHHHHHHHHcC
Confidence 1112468889999999988766555555444
No 358
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=33.64 E-value=2.2e+02 Score=30.36 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=24.0
Q ss_pred CccEEEEecCChhhHHHHHHHhhCCCCcEEEEecCCC
Q 007482 72 MADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGV 108 (602)
Q Consensus 72 ~vDlavi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf 108 (602)
++|+++.++|... .....+.+.++|++ +|=.|+-|
T Consensus 49 ~~D~vFlalp~~~-s~~~~~~~~~~g~~-VIDlSadf 83 (310)
T TIGR01851 49 AADVAILCLPDDA-AREAVSLVDNPNTC-IIDASTAY 83 (310)
T ss_pred CCCEEEECCCHHH-HHHHHHHHHhCCCE-EEECChHH
Confidence 4899999999864 55666666557775 44456544
No 359
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=33.17 E-value=93 Score=24.49 Aligned_cols=41 Identities=7% Similarity=0.026 Sum_probs=28.3
Q ss_pred HHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCee
Q 007482 86 AASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVV 127 (602)
Q Consensus 86 ~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~ri 127 (602)
+...++.+.++|.+.+ .+|+.-.-....++.+.+++.|+.+
T Consensus 17 ~~~~~~~a~~~g~~~v-~iTDh~~~~~~~~~~~~~~~~gi~~ 57 (67)
T smart00481 17 PEELVKRAKELGLKAI-AITDHGNLFGAVEFYKAAKKAGIKP 57 (67)
T ss_pred HHHHHHHHHHcCCCEE-EEeeCCcccCHHHHHHHHHHcCCeE
Confidence 5678888888999854 4577653333456677778888764
No 360
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=32.69 E-value=1.9e+02 Score=29.04 Aligned_cols=13 Identities=15% Similarity=-0.018 Sum_probs=10.6
Q ss_pred HHHHHHhcCCeEE
Q 007482 22 PIQRMLDFDFLCV 34 (602)
Q Consensus 22 ~~~~~~~~g~~~V 34 (602)
.++.|++.|++++
T Consensus 14 l~~~L~~~g~~V~ 26 (292)
T TIGR01777 14 LTQRLTKDGHEVT 26 (292)
T ss_pred HHHHHHHcCCEEE
Confidence 7788888899864
No 361
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=32.22 E-value=75 Score=32.43 Aligned_cols=54 Identities=19% Similarity=0.304 Sum_probs=32.5
Q ss_pred HHHHHHHhhcCCCccEEEEEEecCCC-----------------cHHHHH----HHHHhc-CCCCCEEEEEeCcCccC
Q 007482 204 LSDHILRFNNIPQVKMMVVLGELGGR-----------------DEYSLV----EALKQG-KVNKPVVAWVSGTCARL 258 (602)
Q Consensus 204 ~~d~l~~l~~Dp~t~~I~ly~E~g~~-----------------~~~~f~----~~~r~~-~~~KPVv~~k~Gr~~~g 258 (602)
+.+.++.+.+||++++|++-.+ |-+ +.+.|. +..++. ...||||+..-|..-.|
T Consensus 36 l~~~~~~~~~d~~v~~vvl~g~-g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 111 (260)
T PRK05809 36 LDTVLDDIENDDNVYAVILTGA-GEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAINGFALGG 111 (260)
T ss_pred HHHHHHHHhcCCCcEEEEEEcC-CCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecH
Confidence 4456666777888888888777 510 111122 222233 36899999998876544
No 362
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=32.10 E-value=4.1e+02 Score=27.28 Aligned_cols=113 Identities=14% Similarity=0.157 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHHHhCCCeeEcCCcccccccCcccccccCCcccccccccCCCCCcEEEEec--ChhH----HHHHHHH
Q 007482 107 GVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSK--SGGM----SNELYNT 180 (602)
Q Consensus 107 Gf~E~~~~~l~~~a~~~g~riiGPNc~G~~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQ--SG~l----~~~~~~~ 180 (602)
+++|+..+++.+.|++.|-+ ||...- .+ . .-+.+.|+++.. +..+ ...+-..
T Consensus 29 ~Vs~~tr~rV~~~a~elgY~---pn~~a~------~l-----------~--~~~~~~Igvv~~~~~~~~~~~l~~gi~~~ 86 (328)
T PRK11303 29 RVSDKTVEKVMAVVREHNYH---PNAVAA------GL-----------R--AGRTRSIGLIIPDLENTSYARIAKYLERQ 86 (328)
T ss_pred CcCHHHHHHHHHHHHHhCCC---CCHHHH------Hh-----------h--cCCCceEEEEeCCCCCchHHHHHHHHHHH
Confidence 47888999999999998854 553211 01 0 001233444431 2222 2334445
Q ss_pred HHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHhcCCCCCEEEE
Q 007482 181 IARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAW 250 (602)
Q Consensus 181 ~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~~~KPVv~~ 250 (602)
+.++|.-+..+ .+.++. -...++++.+.+. .+..|++... ...+ ..+++.+++ .++|||.+
T Consensus 87 ~~~~g~~~~~~-~~~~~~---~~~~~~~~~l~~~-~vdgiIi~~~-~~~~-~~~~~~l~~--~~iPvV~v 147 (328)
T PRK11303 87 ARQRGYQLLIA-CSDDQP---DNEMRCAEHLLQR-QVDALIVSTS-LPPE-HPFYQRLQN--DGLPIIAL 147 (328)
T ss_pred HHHcCCEEEEE-eCCCCH---HHHHHHHHHHHHc-CCCEEEEcCC-CCCC-hHHHHHHHh--cCCCEEEE
Confidence 55555444332 233332 2345677776544 6788877543 1122 344444443 57899987
No 363
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=31.99 E-value=1.1e+02 Score=32.23 Aligned_cols=96 Identities=9% Similarity=-0.082 Sum_probs=48.1
Q ss_pred CCcEEEEe-eCCcH-HHHHHHhcCCeE-EEEEeCCC----CCC-ccccccCcee-ecccccCCHHHHhhcCCCccEEEEe
Q 007482 9 KTTQALFY-NYKQL-PIQRMLDFDFLC-VAGIINPG----AEG-FQKLFFGQEE-IAIPVHSTVEAACAAHPMADVFINF 79 (602)
Q Consensus 9 p~s~avv~-g~~~~-~~~~~~~~g~~~-V~gv~~p~----~~~-~~~~~~g~~v-~G~~~y~sv~~i~~~~p~vDlavi~ 79 (602)
+++++||| |.-|. ....|.+.|.++ +.... +. +.+ +.....|+.. .-.+++.+.++. + .+|++|++
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~---~~D~vila 79 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRS-DYEAVRENGLQVDSVHGDFHLPPVQAYRSAEDM-P---PCDWVLVG 79 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC-CHHHHHhCCeEEEeCCCCeeecCceEEcchhhc-C---CCCEEEEE
Confidence 46799997 44444 555666678775 32332 20 111 0000112111 113344444432 2 48999999
Q ss_pred cCChhhHHHHHHHhhCCC--CcEEEEecCCCCH
Q 007482 80 SSFRSAAASSMAALKQPT--IRVVAIIAEGVPE 110 (602)
Q Consensus 80 vp~~~~~~~~~e~~~~~g--v~~~viis~Gf~E 110 (602)
|+... ..++++.+...- -..++.+.-|+..
T Consensus 80 vK~~~-~~~~~~~l~~~~~~~~~iv~lqNG~~~ 111 (313)
T PRK06249 80 LKTTA-NALLAPLIPQVAAPDAKVLLLQNGLGV 111 (313)
T ss_pred ecCCC-hHhHHHHHhhhcCCCCEEEEecCCCCc
Confidence 99875 566666554211 1235555668763
No 364
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=31.91 E-value=5.8e+02 Score=26.16 Aligned_cols=40 Identities=13% Similarity=0.097 Sum_probs=30.7
Q ss_pred HHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCee
Q 007482 86 AASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVV 127 (602)
Q Consensus 86 ~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~ri 127 (602)
.+..+++|.+.|+..+++.-.-+ +...++++.++++|+..
T Consensus 104 ~e~f~~~~~~aGvdgviipDlp~--ee~~~~~~~~~~~gl~~ 143 (256)
T TIGR00262 104 VEEFYAKCKEVGVDGVLVADLPL--EESGDLVEAAKKHGVKP 143 (256)
T ss_pred HHHHHHHHHHcCCCEEEECCCCh--HHHHHHHHHHHHCCCcE
Confidence 36778889999999988864433 34578899999999763
No 365
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=31.86 E-value=1.4e+02 Score=28.21 Aligned_cols=48 Identities=10% Similarity=0.099 Sum_probs=32.8
Q ss_pred EEecCChhhHHHHHHHhhCCCCcEEEEecC--CCCHHHHHHHHHHHHhCCC
Q 007482 77 INFSSFRSAAASSMAALKQPTIRVVAIIAE--GVPEADTKQLIAYARSNNK 125 (602)
Q Consensus 77 vi~vp~~~~~~~~~e~~~~~gv~~~viis~--Gf~E~~~~~l~~~a~~~g~ 125 (602)
||..+...+.+++++++.+..+..+++ |+ |--+++-.++++.+|++|.
T Consensus 43 Vi~~g~~~tp~e~v~aA~~~dv~vIgv-Ssl~g~h~~l~~~lve~lre~G~ 92 (143)
T COG2185 43 VINLGLFQTPEEAVRAAVEEDVDVIGV-SSLDGGHLTLVPGLVEALREAGV 92 (143)
T ss_pred EEecCCcCCHHHHHHHHHhcCCCEEEE-EeccchHHHHHHHHHHHHHHhCC
Confidence 444555556677777776677775544 43 4445578999999999885
No 366
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=31.73 E-value=1.8e+02 Score=30.30 Aligned_cols=98 Identities=15% Similarity=0.060 Sum_probs=60.7
Q ss_pred CcEEEEe-eCCcH-HHHHHHhcC----CeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCCh
Q 007482 10 TTQALFY-NYKQL-PIQRMLDFD----FLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFR 83 (602)
Q Consensus 10 ~s~avv~-g~~~~-~~~~~~~~g----~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~ 83 (602)
+.+.+|| |..++ ++..+++.| .++ ...+ |..... ..+ .+-+|+....+..++.. +.|+++++|.|.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I-~v~~-~~~e~~-~~l--~~~~g~~~~~~~~~~~~---~advv~LavKPq 73 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEI-IVTN-RSEEKR-AAL--AAEYGVVTTTDNQEAVE---EADVVFLAVKPQ 73 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceE-EEeC-CCHHHH-HHH--HHHcCCcccCcHHHHHh---hCCEEEEEeChH
Confidence 5678886 33344 888888877 333 2332 533211 001 12334444666666655 369999999986
Q ss_pred hhHHHHHHHhhC-CCCcEEEEecCCCCHHHHHHH
Q 007482 84 SAAASSMAALKQ-PTIRVVAIIAEGVPEADTKQL 116 (602)
Q Consensus 84 ~~~~~~~e~~~~-~gv~~~viis~Gf~E~~~~~l 116 (602)
..++++..+.. ..=+.+|=+.+|.+-...++.
T Consensus 74 -~~~~vl~~l~~~~~~~lvISiaAGv~~~~l~~~ 106 (266)
T COG0345 74 -DLEEVLSKLKPLTKDKLVISIAAGVSIETLERL 106 (266)
T ss_pred -hHHHHHHHhhcccCCCEEEEEeCCCCHHHHHHH
Confidence 58889998873 345668888899987654444
No 367
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=31.49 E-value=4.4e+02 Score=29.00 Aligned_cols=174 Identities=12% Similarity=0.063 Sum_probs=100.0
Q ss_pred hHHHHHHH-hhCCCCcEEEEecCCCCHH---HHHHHHHHHH-hCCCeeEcCCcccccccCc-ccccc-cCCcccccccc-
Q 007482 85 AAASSMAA-LKQPTIRVVAIIAEGVPEA---DTKQLIAYAR-SNNKVVIGPATVGGIQAGA-FKIGD-TAGTIDNIIHC- 156 (602)
Q Consensus 85 ~~~~~~e~-~~~~gv~~~viis~Gf~E~---~~~~l~~~a~-~~g~riiGPNc~G~~~~~~-~~l~~-~~~~~~~~~p~- 156 (602)
.+..++++ ..+...+.++|+++..++. |.+.+.+.++ +.|+.|+.-||-|+..+.. .+... ..+.+....+.
T Consensus 76 kL~~aI~~~~~~~~P~~I~V~ttC~~~iIGdDi~~v~~~~~~~~~~pvi~v~t~gf~g~~~~~G~~~a~~al~~~~~~~~ 155 (426)
T cd01972 76 KLEDTIKEAYSRYKPKAIFVATSCATGIIGDDVESVVEELEDEIGIPVVALHCEGFKGKHWRSGFDAAFHGILRHLVPPQ 155 (426)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCChHHHhccCHHHHHHHHHHhhCCCEEEEeCCccCCccHhHHHHHHHHHHHHHhcCCC
Confidence 34444544 4445789999999998887 5555655544 5689999999999976332 01100 00001111111
Q ss_pred -cCCCCCcEEEEecChh-------HHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCC
Q 007482 157 -KLYRPGSVGFVSKSGG-------MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGG 228 (602)
Q Consensus 157 -~~~~~G~valvSQSG~-------l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~ 228 (602)
....++.|-++.-... =..++...+.+.|+-+..+.+-|.. + +-+.+=++-+.-++...
T Consensus 156 ~~~~~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~~~~~------~----~ei~~~~~A~lniv~~~--- 222 (426)
T cd01972 156 DPTKQEDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIAGGCS------V----EELERASEAAANVTLCL--- 222 (426)
T ss_pred CCCCCCCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeCCCCC------H----HHHHhcccCCEEEEECh---
Confidence 1224668988875532 2366777888888888766554333 3 33445555555554332
Q ss_pred CcHHHHHHHHHhcCCCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHHHHHHHcCC
Q 007482 229 RDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGA 291 (602)
Q Consensus 229 ~~~~~f~~~~r~~~~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGv 291 (602)
..+..+++..++ +.+.|.+-+ ..+-| -.+|++-++++.+..|+
T Consensus 223 ~~g~~~a~~Lee-~~GiP~~~~---~~P~G----------------~~~T~~~l~~ia~~~g~ 265 (426)
T cd01972 223 DLGYYLGAALEQ-RFGVPEIKA---PQPYG----------------IEATDKWLREIAKVLGM 265 (426)
T ss_pred hHHHHHHHHHHH-HhCCCeEec---CCccC----------------HHHHHHHHHHHHHHhCC
Confidence 234556666554 357786643 12233 12455788888888885
No 368
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=31.46 E-value=3e+02 Score=31.12 Aligned_cols=74 Identities=12% Similarity=0.151 Sum_probs=42.7
Q ss_pred cccCCHHHHhhcCCCccEEEEecCCh----hhHHHHHHHhhCCCCcEEEEecC----C--CCHHHHHHHHHHHHhCCCee
Q 007482 58 PVHSTVEAACAAHPMADVFINFSSFR----SAAASSMAALKQPTIRVVAIIAE----G--VPEADTKQLIAYARSNNKVV 127 (602)
Q Consensus 58 ~~y~sv~~i~~~~p~vDlavi~vp~~----~~~~~~~e~~~~~gv~~~viis~----G--f~E~~~~~l~~~a~~~g~ri 127 (602)
|.|+.........+ ...+.+.+... -..+++.+.+ ..+.|.+++.+- | ++.+..++|+++|+++++.|
T Consensus 240 P~y~~y~~~~~~~g-~~~v~~~~~~~~~~~~d~~~l~~~~-~~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~i 317 (517)
T PRK13355 240 PDYPLWTACVNLAG-GTAVHYRCDEQSEWYPDIDDIRSKI-TSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLII 317 (517)
T ss_pred CCCcCHHHHHHHCC-CEEEEeecCcccCCCCCHHHHHHhc-CcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEE
Confidence 56666555443221 34443333221 1234444444 467887777763 3 45667899999999999887
Q ss_pred EcCCcc
Q 007482 128 IGPATV 133 (602)
Q Consensus 128 iGPNc~ 133 (602)
+==++.
T Consensus 318 i~DE~Y 323 (517)
T PRK13355 318 FSDEIY 323 (517)
T ss_pred EEehhh
Confidence 744443
No 369
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=31.41 E-value=4.1e+02 Score=27.87 Aligned_cols=97 Identities=9% Similarity=0.083 Sum_probs=47.8
Q ss_pred CCcEEEEee--CCcH-HHHHHHhcCCeEEEEEeCCCCCCcc-cccc-Cc----eeecccccCCHHHHhhcCCCccEEEEe
Q 007482 9 KTTQALFYN--YKQL-PIQRMLDFDFLCVAGIINPGAEGFQ-KLFF-GQ----EEIAIPVHSTVEAACAAHPMADVFINF 79 (602)
Q Consensus 9 p~s~avv~g--~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~-~~~~-g~----~v~G~~~y~sv~~i~~~~p~vDlavi~ 79 (602)
.+++.|.|| +-|+ +++.|++.|+++++-...+...... +... +. ....+.-..++.++..+. ++|.+|-+
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~vih~ 82 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEF-KPEIVFHL 82 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhc-CCCEEEEC
Confidence 355555553 2233 7888888999865322112111000 0000 00 112333334455554443 37988766
Q ss_pred cCChh-----------------hHHHHHHHhhCCC-CcEEEEecC
Q 007482 80 SSFRS-----------------AAASSMAALKQPT-IRVVAIIAE 106 (602)
Q Consensus 80 vp~~~-----------------~~~~~~e~~~~~g-v~~~viis~ 106 (602)
..... ....++++|.+.+ ++.+|.+|+
T Consensus 83 A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 83 AAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred CcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 53210 1234577777666 777887776
No 370
>PRK06186 hypothetical protein; Validated
Probab=31.35 E-value=66 Score=32.66 Aligned_cols=74 Identities=16% Similarity=0.124 Sum_probs=50.5
Q ss_pred ccccCCHHHHhhc---CCCccEEEEecCChhhHHHHHHHhhCCCCcEEEEecCCCCHH---HHHHHHHHHHhCCCeeEcC
Q 007482 57 IPVHSTVEAACAA---HPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEA---DTKQLIAYARSNNKVVIGP 130 (602)
Q Consensus 57 ~~~y~sv~~i~~~---~p~vDlavi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~---~~~~l~~~a~~~g~riiGP 130 (602)
..+|.||-+++.. .-++++-+..+++.. +.+- +.+ +++.+++ +..||+.. -.-..+++||++++.++|=
T Consensus 14 ~daY~Sv~eal~ha~~~~~~~~~i~wi~s~~-l~~~-~~l--~~~dgil-vpgGfg~rg~~Gki~ai~~Are~~iP~LGI 88 (229)
T PRK06186 14 VTAHQAIPLALDLAAAVLGLPVDYEWLPTPE-ITDP-EDL--AGFDGIW-CVPGSPYRNDDGALTAIRFARENGIPFLGT 88 (229)
T ss_pred cHHHHHHHHHHHHHHHhcCCeeEEEEEchhh-cCCh-hhH--hhCCeeE-eCCCCCcccHhHHHHHHHHHHHcCCCeEee
Confidence 4789999988752 114788888888764 3221 122 3555555 47889876 3456688999999999985
Q ss_pred Cccccc
Q 007482 131 ATVGGI 136 (602)
Q Consensus 131 Nc~G~~ 136 (602)
|+|+.
T Consensus 89 -ClGmQ 93 (229)
T PRK06186 89 -CGGFQ 93 (229)
T ss_pred -chhhH
Confidence 77753
No 371
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=31.34 E-value=6.4e+02 Score=26.48 Aligned_cols=130 Identities=9% Similarity=0.045 Sum_probs=74.3
Q ss_pred HHHHHHHHHhCCCeeEcCCcccccc-cCcccccccCCcccccccc------------cCCCCCcEEEEecChhHH----H
Q 007482 113 TKQLIAYARSNNKVVIGPATVGGIQ-AGAFKIGDTAGTIDNIIHC------------KLYRPGSVGFVSKSGGMS----N 175 (602)
Q Consensus 113 ~~~l~~~a~~~g~riiGPNc~G~~~-~~~~~l~~~~~~~~~~~p~------------~~~~~G~valvSQSG~l~----~ 175 (602)
...+..++...++.+|+|.+-.-.- ....+. -.|....|. ..+.--.|++|..+...+ .
T Consensus 79 ~~~~~~v~~~~~iP~Is~~~~~~~~~s~~~~~----~~~~R~~p~~~~~~~ai~~ll~~~~w~~vaii~~~~~~g~~~~~ 154 (362)
T cd06367 79 AQILDFTSAQTRIPVVGISGRESIFMSDKNIH----SLFLQTGPSLEQQADVMLEILEEYDWHQFSVVTSRDPGYRDFLD 154 (362)
T ss_pred hhhhhhhhhhhcCcEEEeeccccccccCCCcc----cceEeecCcHHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHHHH
Confidence 4556778899999999986654211 111010 111111111 123566899999977653 3
Q ss_pred HHHHHHHhcCCc--eeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHhcCCCCCEEEEE
Q 007482 176 ELYNTIARVTDG--IYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWV 251 (602)
Q Consensus 176 ~~~~~~~~~g~G--~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~~~KPVv~~k 251 (602)
.+...+.+.|+- +...+..-... .-++.+++..+.+ .+.++|+++.. ..+...|++.+++.....|-.++.
T Consensus 155 ~l~~~l~~~g~~~~i~~~~~~~~~~--~~~~~~~l~~l~~-~~~~vivl~~~--~~~~~~il~~a~~~g~~~~~~~wI 227 (362)
T cd06367 155 RVETTLEESFVGWEFQLVLTLDLSD--DDGDARLLRQLKK-LESRVILLYCS--KEEAERIFEAAASLGLTGPGYVWI 227 (362)
T ss_pred HHHHHHHhcccceeeeeeEEeccCC--CcchHHHHHHHHh-cCCcEEEEeCC--HHHHHHHHHHHHHcCCCCCCcEEE
Confidence 344445556665 33333222111 2267788877765 56789988887 256778999888876444433443
No 372
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=31.31 E-value=3.5e+02 Score=28.67 Aligned_cols=112 Identities=20% Similarity=0.188 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHhCCCeeEcCCcccccccCcccccccCCcccccccccCCCCCcEEEE------ecChhHHHHHHHH
Q 007482 107 GVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFV------SKSGGMSNELYNT 180 (602)
Q Consensus 107 Gf~E~~~~~l~~~a~~~g~riiGPNc~G~~~~~~~~l~~~~~~~~~~~p~~~~~~G~valv------SQSG~l~~~~~~~ 180 (602)
.++|+.-+++.+.+++.|-+ ||-..- .|. .-+-+-|++| ...+.+...+-+.
T Consensus 26 ~Vs~eTr~kV~~a~~elgY~---pN~~Ar------~L~-------------~~~s~~Ig~i~p~~~~~~~~~i~~gi~~~ 83 (333)
T COG1609 26 YVSEETREKVLAAIKELGYR---PNAVAR------SLR-------------TGRTKTIGLVVPDITNPFFAEILKGIEEA 83 (333)
T ss_pred CCCHHHHHHHHHHHHHHCCC---CCHHHH------HHH-------------hCCCCEEEEEeCCCCCchHHHHHHHHHHH
Confidence 57788889999999998877 775321 110 0033455555 3455666666666
Q ss_pred HHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHhcCCCCCEEEE
Q 007482 181 IARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAW 250 (602)
Q Consensus 181 ~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~~~KPVv~~ 250 (602)
+.+.|. +-.+...+.. .-...++++.+. +.++..|+++.. .....+.+.+.+ .+.|+|++
T Consensus 84 ~~~~gy--~~~l~~~~~~--~~~e~~~~~~l~-~~~vdGiIi~~~---~~~~~~~~~l~~--~~~P~V~i 143 (333)
T COG1609 84 AREAGY--SLLLANTDDD--PEKEREYLETLL-QKRVDGLILLGE---RPNDSLLELLAA--AGIPVVVI 143 (333)
T ss_pred HHHcCC--EEEEECCCCC--HHHHHHHHHHHH-HcCCCEEEEecC---CCCHHHHHHHHh--cCCCEEEE
Confidence 665554 4455544443 334555555554 455666666653 333445555554 48999998
No 373
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=31.27 E-value=1.8e+02 Score=32.10 Aligned_cols=90 Identities=21% Similarity=0.244 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHhhcCCCccEEEEEEecCCCc-HHHHHHHHHhcC-CCCCEEEEEeCcCccCccccccccccCCcCCCCc
Q 007482 199 FPGSTLSDHILRFNNIPQVKMMVVLGELGGRD-EYSLVEALKQGK-VNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEM 276 (602)
Q Consensus 199 ~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~-~~~f~~~~r~~~-~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~ 276 (602)
+++.+ .++++++. |...|.|++-.= |..+ +..|+++++++. +++|||+. -|+..| +.....-+ +|.+
T Consensus 284 ~pG~d-~~~l~~~~-~~g~~GiVleg~-G~G~vp~~~~~~l~~a~~~GipVV~t--Sqc~~G---~V~~~~Y~--~g~~- 352 (404)
T TIGR02153 284 YPGIS-PEIIEFLV-DKGYKGIVIEGT-GLGHVSEDWIPSIKRATDDGVPVVMT--SQCLYG---RVNLNVYS--TGRE- 352 (404)
T ss_pred CCCCC-HHHHHHHH-hCCCCEEEEeeE-CCCCCCHHHHHHHHHHHHCCCEEEEe--CCCCCC---ccCccccc--hhhh-
Q ss_pred chHHHHHHHHHHcCCcccCCHHHHHHHHHHHH
Q 007482 277 ESAQAKNQALRDAGAVVPTSYEAFESAIKETF 308 (602)
Q Consensus 277 ~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~ 308 (602)
+.++|+|...++.---..+|..+
T Consensus 353 ---------l~~~GvI~~gdmtpe~A~vkLm~ 375 (404)
T TIGR02153 353 ---------LLKAGVIPCEDMLPEVAYVKLMW 375 (404)
T ss_pred ---------HhhCCEEECCCCCHHHHHHHHHH
No 374
>PLN02600 enoyl-CoA hydratase
Probab=31.18 E-value=1e+02 Score=31.27 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=13.1
Q ss_pred CCCCEEEEEeCcCccC
Q 007482 243 VNKPVVAWVSGTCARL 258 (602)
Q Consensus 243 ~~KPVv~~k~Gr~~~g 258 (602)
..||||+..-|..-.|
T Consensus 87 ~~kPvIAav~G~a~Gg 102 (251)
T PLN02600 87 LSIPTIAVVEGAALGG 102 (251)
T ss_pred CCCCEEEEecCeecch
Confidence 6899999998877654
No 375
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=31.16 E-value=2.9e+02 Score=31.48 Aligned_cols=42 Identities=10% Similarity=-0.097 Sum_probs=22.9
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHHHHhC--CCeeEcCCcccccc
Q 007482 96 PTIRVVAIIAEGVPEADTKQLIAYARSN--NKVVIGPATVGGIQ 137 (602)
Q Consensus 96 ~gv~~~viis~Gf~E~~~~~l~~~a~~~--g~riiGPNc~G~~~ 137 (602)
...+.++|+++..+|...+.+..++++. +++|+.=+|-|+-.
T Consensus 84 ~~P~~I~V~sTC~seiIGdDi~~v~~~~~~~~~Vi~v~t~gf~~ 127 (519)
T PRK02910 84 FQPDLIVVGPSCTAELLQEDLGGLAKHAGLPIPVLPLELNAYRV 127 (519)
T ss_pred cCCCEEEEeCCcHHHHhccCHHHHHHHhCCCCCEEEEecCCccc
Confidence 3556666666666666444444444332 45666666665543
No 376
>PLN02550 threonine dehydratase
Probab=31.14 E-value=2.6e+02 Score=32.55 Aligned_cols=197 Identities=17% Similarity=0.136 Sum_probs=98.0
Q ss_pred EEecCChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCC--CeeEcCCcccccccCcccccc-cCCccccc
Q 007482 77 INFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNN--KVVIGPATVGGIQAGAFKIGD-TAGTIDNI 153 (602)
Q Consensus 77 vi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g--~riiGPNc~G~~~~~~~~l~~-~~~~~~~~ 153 (602)
||+.++.-....+--.|...|++..|++..+-++...+. .|.+| +.+.|.+.-.-..-.. .+.. -+..|.
T Consensus 160 VV~aSaGNhAqgvA~aA~~lGika~IvmP~~tp~~Kv~~----~r~~GAeVvl~g~~~dea~~~A~-~la~e~g~~fi-- 232 (591)
T PLN02550 160 VICSSAGNHAQGVALSAQRLGCDAVIAMPVTTPEIKWQS----VERLGATVVLVGDSYDEAQAYAK-QRALEEGRTFI-- 232 (591)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHH----HHHcCCEEEEeCCCHHHHHHHHH-HHHHhcCCEEE--
Confidence 444444333455666688899999999999888654333 35666 4566754322211111 1100 011221
Q ss_pred ccccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHHH
Q 007482 154 IHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYS 233 (602)
Q Consensus 154 ~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~ 233 (602)
.|. -.|-.+ -.| |+++.++++++.. .+ =.-+|.+|+--. -..+.-++..+ .|++|+|++--| +-. .
T Consensus 233 ~pf--ddp~vi--aGq-gTig~EI~eQl~~-~~-D~VvvpVGgGGL-iaGia~~lK~l--~p~vkVIGVEp~-~a~---~ 298 (591)
T PLN02550 233 PPF--DHPDVI--AGQ-GTVGMEIVRQHQG-PL-HAIFVPVGGGGL-IAGIAAYVKRV--RPEVKIIGVEPS-DAN---A 298 (591)
T ss_pred CCC--CChHHH--HHH-HHHHHHHHHHcCC-CC-CEEEEEeChhHH-HHHHHHHHHHh--CCCCEEEEEEEC-CCh---H
Confidence 110 012222 234 8888888876542 11 125677777531 12334444443 799999999888 422 2
Q ss_pred HHHHHHhcCCCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHh
Q 007482 234 LVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEK 310 (602)
Q Consensus 234 f~~~~r~~~~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~~~ 310 (602)
+.... ..+|||..=..++-..| .+... .| + ..|+.+-+-.+-++.=+-+|+.+.++.++.+
T Consensus 299 ~~~s~---~~G~~v~~~~~~tiAdG----iav~~----~G-~----~t~~i~~~~vD~vV~Vsd~eI~~Ai~~l~e~ 359 (591)
T PLN02550 299 MALSL---HHGERVMLDQVGGFADG----VAVKE----VG-E----ETFRLCRELVDGVVLVSRDAICASIKDMFEE 359 (591)
T ss_pred HHHHH---hcCCccccCCCCCccce----eecCC----CC-H----HHHHHHHhhCCEEEEECHHHHHHHHHHHHHH
Confidence 22222 24667654333333332 11111 11 1 4444333334444444666777777666643
No 377
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=31.08 E-value=90 Score=28.80 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=33.4
Q ss_pred HHHHHhhCCCCcEEEEecC-----------------CCCHHHHHHHHHHHHhCCCeeEcCCccc
Q 007482 88 SSMAALKQPTIRVVAIIAE-----------------GVPEADTKQLIAYARSNNKVVIGPATVG 134 (602)
Q Consensus 88 ~~~e~~~~~gv~~~viis~-----------------Gf~E~~~~~l~~~a~~~g~riiGPNc~G 134 (602)
..++...+.++..++|.+. +.......++++.|++.|||++.==+.+
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 4455566667888888664 2222267899999999999998876655
No 378
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=31.04 E-value=69 Score=34.75 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=45.4
Q ss_pred CHHHHhhcCCCccEEEEecCChh-hHHHHHHHhhCCCCcEEEEecCCCCH---HHHHHHHHHHHhCCCeeEcC
Q 007482 62 TVEAACAAHPMADVFINFSSFRS-AAASSMAALKQPTIRVVAIIAEGVPE---ADTKQLIAYARSNNKVVIGP 130 (602)
Q Consensus 62 sv~~i~~~~p~vDlavi~vp~~~-~~~~~~e~~~~~gv~~~viis~Gf~E---~~~~~l~~~a~~~g~riiGP 130 (602)
|+.+.-. +.-++|.||.+-. -=+.++++|.+.|...+=| ||-|+ ..|.+--+.|++.|+-|++.
T Consensus 76 Sl~emak---~~~vivN~vGPyR~hGE~VVkacienG~~~vDI--SGEP~f~E~mq~kYhd~A~ekGVYIVsa 143 (423)
T KOG2733|consen 76 SLDEMAK---QARVIVNCVGPYRFHGEPVVKACIENGTHHVDI--SGEPQFMERMQLKYHDLAKEKGVYIVSA 143 (423)
T ss_pred HHHHHHh---hhEEEEeccccceecCcHHHHHHHHcCCceecc--CCCHHHHHHHHHHHHHHHHhcCeEEEee
Confidence 3555433 3577888887632 2378999999999987765 45554 46777788999999988863
No 379
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=30.60 E-value=1.2e+02 Score=30.87 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=28.5
Q ss_pred CCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHHHHHHHcCCcc
Q 007482 243 VNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVV 293 (602)
Q Consensus 243 ~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~ 293 (602)
..||||+..-|..-.| +-.-+..+-=.++.++ ..|.--.-+.|++.
T Consensus 101 ~~kpvIaav~G~a~Gg-G~~lalacD~~ia~~~----a~f~~pe~~~Gl~p 146 (262)
T PRK07509 101 LPVPVIAALEGVCFGG-GLQIALGADIRIAAPD----TKLSIMEAKWGLVP 146 (262)
T ss_pred CCCCEEEEECCeeecc-hHHHHHhCCEEEecCC----CEeecchhccCCCC
Confidence 6899999998877554 2444554444455555 44444556677653
No 380
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=30.35 E-value=1.7e+02 Score=30.01 Aligned_cols=93 Identities=9% Similarity=-0.089 Sum_probs=49.3
Q ss_pred CcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeC-CCCCCccccccCcee-ec-----ccccCCHHHHhhcCCCccEEEEec
Q 007482 10 TTQALFY-NYKQL-PIQRMLDFDFLCVAGIIN-PGAEGFQKLFFGQEE-IA-----IPVHSTVEAACAAHPMADVFINFS 80 (602)
Q Consensus 10 ~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~-p~~~~~~~~~~g~~v-~G-----~~~y~sv~~i~~~~p~vDlavi~v 80 (602)
+.++|+| |..|. ....|.+.|+++. .+.- +..-.+... .|-.+ .| .....+..++ + ++|++++++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~-~---~~d~vila~ 74 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVT-LVARRGAHLDALNE-NGLRLEDGEITVPVLAADDPAEL-G---PQDLVILAV 74 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEE-EEECChHHHHHHHH-cCCcccCCceeecccCCCChhHc-C---CCCEEEEec
Confidence 3578887 44444 6666777787742 2321 211000000 01111 11 1234445443 2 489999999
Q ss_pred CChhhHHHHHHHhhCC-CC-cEEEEecCCCC
Q 007482 81 SFRSAAASSMAALKQP-TI-RVVAIIAEGVP 109 (602)
Q Consensus 81 p~~~~~~~~~e~~~~~-gv-~~~viis~Gf~ 109 (602)
++.. +..+++.+... +- ..+|.+..|+.
T Consensus 75 k~~~-~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 75 KAYQ-LPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred cccc-HHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 9864 78888887632 22 24666677886
No 381
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=30.33 E-value=1.8e+02 Score=31.90 Aligned_cols=79 Identities=18% Similarity=0.194 Sum_probs=61.5
Q ss_pred CCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCcc-EEEEEEe--cCCCcH-HHH
Q 007482 159 YRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVK-MMVVLGE--LGGRDE-YSL 234 (602)
Q Consensus 159 ~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~-~I~ly~E--~g~~~~-~~f 234 (602)
.+||.-.+|.+.|.++.-+.+++.+.|.-+..+-.--++ .++..|+-+.|..||+.+ +.+.|.| -|+.++ ++.
T Consensus 77 ~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~---~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I 153 (383)
T COG0075 77 VEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGE---AVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEI 153 (383)
T ss_pred cCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCC---CCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHH
Confidence 479999999999999999999999999887766555555 588999999999999885 4567899 222333 566
Q ss_pred HHHHHh
Q 007482 235 VEALKQ 240 (602)
Q Consensus 235 ~~~~r~ 240 (602)
.+++|+
T Consensus 154 ~~~~k~ 159 (383)
T COG0075 154 AKAAKE 159 (383)
T ss_pred HHHHHH
Confidence 666665
No 382
>PRK10203 hypothetical protein; Provisional
Probab=30.32 E-value=2.8e+02 Score=25.44 Aligned_cols=58 Identities=14% Similarity=0.119 Sum_probs=34.9
Q ss_pred HHHHHHHHHHcCC--CcCCCCCCCCCCCCC-cH-HHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 007482 463 AYEFVESMKKKGI--RVPGIGHRIKRGDNR-DK-RVELLQKFARTHFPSVKYMEYAVQVETY 520 (602)
Q Consensus 463 ~~~~v~~~~~~~~--~ipGfGH~v~~~~~~-DP-Ra~~L~~~~~~~~~~~~~~~~a~~ie~~ 520 (602)
+++-|++..++|+ .+||.|.|+-..+++ +| =......+.+..+.--+++++-.+++++
T Consensus 8 ~E~~I~eA~~~GefdnLpG~GKPL~~~d~~~~p~e~r~~~rilknag~lP~el~LrKE~~~l 69 (122)
T PRK10203 8 AERHILEAQRKGEFDNLPGSGEPLILDDDSHVPPELRAGYRLLKNAGCLPPELEQRREAIQL 69 (122)
T ss_pred HHHHHHHHHHcCCccCCCCCCCCCCCccCCCCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Confidence 4566777777885 799999999765332 11 1122233444445456677776666643
No 383
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=30.27 E-value=1.1e+02 Score=32.62 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=64.8
Q ss_pred CcHHHHHHHhcC--CeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChh-----hH-HHHH
Q 007482 19 KQLPIQRMLDFD--FLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRS-----AA-ASSM 90 (602)
Q Consensus 19 ~~~~~~~~~~~g--~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~-----~~-~~~~ 90 (602)
.++...-++.|+ |.+++.+.+-..+.+.....+.+..|+|.-.|++|+.+.. .|..+|.+.+.. .. +.+.
T Consensus 14 ~~kta~Gllr~~~~~~iv~vvD~~~~~~~~~~~l~~~~~~vpii~s~~~~~e~~--~e~liIgia~~gG~~~~~~~~~i~ 91 (339)
T COG3367 14 NGKTAVGLLRYSEKYAIVAVVDRREAGDDTPRELGGDKADVPIISSVEEALEGL--AEALIIGIAPPGGVLPESWREYIV 91 (339)
T ss_pred cchhhhhhhcccccceeeeEEeeeccccccHHHhCCccCCCcccccHHHHHhcC--cceEEEEeecCCCcCcHHHHHHHH
Confidence 344555566644 6667777653222122233445788999999999987764 377777664321 12 5566
Q ss_pred HHhhCCCCcEEEEecCCCCHH--HHHHHHHHHHhCCCeeE
Q 007482 91 AALKQPTIRVVAIIAEGVPEA--DTKQLIAYARSNNKVVI 128 (602)
Q Consensus 91 e~~~~~gv~~~viis~Gf~E~--~~~~l~~~a~~~g~rii 128 (602)
+++. +|.. +.+||-.. +.-++.++|+++|+|+.
T Consensus 92 eAl~-~G~n----Vvsglh~~ls~dp~~~k~A~~~G~rl~ 126 (339)
T COG3367 92 EALE-AGMN----VVSGLHSFLSDDPEFVKLAERTGVRLD 126 (339)
T ss_pred HHHH-hCch----hhhhhHHHhhcChHHHHHHHHcCCeeE
Confidence 6666 7776 34555443 56789999999999753
No 384
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=30.25 E-value=2.9e+02 Score=31.25 Aligned_cols=47 Identities=17% Similarity=0.098 Sum_probs=32.8
Q ss_pred HHHHHHHhhCCCCcEEEEecCCCCHH-HHHHHHHHHHhCCCeeEcCCccccc
Q 007482 86 AASSMAALKQPTIRVVAIIAEGVPEA-DTKQLIAYARSNNKVVIGPATVGGI 136 (602)
Q Consensus 86 ~~~~~e~~~~~gv~~~viis~Gf~E~-~~~~l~~~a~~~g~riiGPNc~G~~ 136 (602)
.+.+++.|.+.++..+|+- +|. +...+.+..++.|++++||+.-...
T Consensus 58 ~~~l~~~a~~~~id~Vi~g----~E~~l~~glad~l~~~Gi~v~Gps~~aa~ 105 (486)
T PRK05784 58 PEEVKKVAKEVNPDLVVIG----PEEPLFAGVADVLREEGFPVFGASSKCAR 105 (486)
T ss_pred HHHHHHHHHHhCCCEEEEC----CchHHHHHHHHHHHhCCCCEECCcHHHHH
Confidence 5677888887888866652 233 4556777778889999998765443
No 385
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=30.22 E-value=78 Score=30.30 Aligned_cols=108 Identities=20% Similarity=0.331 Sum_probs=67.3
Q ss_pred HHHhhcCCCccEEEEEEecCCCcHHHHHHHHHhcC--CCCCEEEEEeCcCccCcccccccccc-CCcCCCCcchHHHHHH
Q 007482 208 ILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGK--VNKPVVAWVSGTCARLFKSEVQFGHA-GAKSGGEMESAQAKNQ 284 (602)
Q Consensus 208 l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~--~~KPVv~~k~Gr~~~g~~~~aa~sHt-galag~~~~~a~~~~a 284 (602)
+.-+...| .-|++++| .+.-=+.|++++.+.+ ..+|.|.+..+.-+...-...-++|. |+..|.. .....
T Consensus 15 ~~~~a~~~--~pVlI~GE-~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~----~~~~G 87 (168)
T PF00158_consen 15 AKRAASSD--LPVLITGE-TGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGAR----SDKKG 87 (168)
T ss_dssp HHHHTTST--S-EEEECS-TTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTS----SEBEH
T ss_pred HHHHhCCC--CCEEEEcC-CCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccc----cccCC
Confidence 33344444 66889999 6666688999998875 56899999877654320012234452 3333332 11224
Q ss_pred HHH--HcCCcccCCHHHHHHHHHHHHHhHhhcCCCCCCCC
Q 007482 285 ALR--DAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKE 322 (602)
Q Consensus 285 ~~~--qaGvi~v~~~~el~~~~~~~~~~~~~~g~~~~~~~ 322 (602)
+|+ +-|.+.-+++++|..-++..+-+...+|.+....+
T Consensus 88 ~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~ 127 (168)
T PF00158_consen 88 LLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGS 127 (168)
T ss_dssp HHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTS
T ss_pred ceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccc
Confidence 555 45899999999999999988878788777665543
No 386
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=30.07 E-value=1.6e+02 Score=24.79 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=31.7
Q ss_pred HHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCee
Q 007482 87 ASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVV 127 (602)
Q Consensus 87 ~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~ri 127 (602)
..+++++.+ |--..|++++-.++...+.+..+|+++++.+
T Consensus 17 ~~v~kai~~-gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~ 56 (82)
T PRK13602 17 KQTVKALKR-GSVKEVVVAEDADPRLTEKVEALANEKGVPV 56 (82)
T ss_pred HHHHHHHHc-CCeeEEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 467777774 4444777799999988889999999999875
No 387
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=30.01 E-value=51 Score=34.82 Aligned_cols=53 Identities=26% Similarity=0.291 Sum_probs=37.5
Q ss_pred cccCCHHHHhhcCCCccEEEEecCChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCccc
Q 007482 58 PVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVG 134 (602)
Q Consensus 58 ~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc~G 134 (602)
|-|.++.. +. .+|.+|+++|...++..+++... +|.+.|.+++|-+++|.++=
T Consensus 164 K~Y~~i~~--~~--t~dfvimFiP~E~~~~~a~~~d~--------------------~l~~~A~~k~V~l~sPstL~ 216 (304)
T PF02646_consen 164 KDYWNIIP--PN--TPDFVIMFIPSESAYSAALEADP--------------------ELIEYAFKKNVVLVSPSTLM 216 (304)
T ss_pred CCCCccCC--CC--CCCEEEEEecChHHHHHHHhcCh--------------------HHHHHHHHCCcEEecHHHHH
Confidence 45665432 22 37999999998765555555432 57888999999999998753
No 388
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=29.91 E-value=6.1e+02 Score=25.82 Aligned_cols=149 Identities=10% Similarity=0.067 Sum_probs=88.7
Q ss_pred hCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCcccccccC-cccccccCCcccccccc------------cCCC
Q 007482 94 KQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAG-AFKIGDTAGTIDNIIHC------------KLYR 160 (602)
Q Consensus 94 ~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc~G~~~~~-~~~l~~~~~~~~~~~p~------------~~~~ 160 (602)
.+.++.++| .. ........+..++...++.++.|.|---.-.. ... .-+|....|. ..+.
T Consensus 48 ~~~~v~avi--Gp-~~~~~~~~~~~~~~~~~ip~is~~~~~~~ls~~~~~----~~~~~r~~p~~~~~~~a~~~~l~~~~ 120 (348)
T PF01094_consen 48 NKQGVVAVI--GP-SCSSSAEAVASLASEWNIPQISPGSTSPSLSDRKTR----YPTFFRTVPSDSSQARALVDLLKHFG 120 (348)
T ss_dssp HHHTECEEE--ET-SSHHHHHHHHHHHHHTT-EEEESSGGSGGGGSTTTT----TTTEEESSB-HHHHHHHHHHHHHHTT
T ss_pred cCCCcEEEE--CC-Ccccccchhheeecccccceeeccccccccccchhh----ccccccccccHHHHHHHHHHhhhcCC
Confidence 334555444 22 22335667888899999999999664432211 101 1111111111 1145
Q ss_pred CCcEEEEecChhH----HHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhc-CCCccEEEEEEecCCCcHHHHH
Q 007482 161 PGSVGFVSKSGGM----SNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNN-IPQVKMMVVLGELGGRDEYSLV 235 (602)
Q Consensus 161 ~G~valvSQSG~l----~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~-Dp~t~~I~ly~E~g~~~~~~f~ 235 (602)
=-.|++|..+... ...+.+.+++.+.......+.-... +.+..+++..+.+ ....++|+++.. ..+.+.|+
T Consensus 121 w~~v~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~rvvil~~~--~~~~~~~l 196 (348)
T PF01094_consen 121 WTRVSVVYSDDDYGNSLADSFQDLLRERGGICVAFISVVISS--DSDAEELLKKLKEIKSGARVVILCSS--PEDARQFL 196 (348)
T ss_dssp SSEEEEEEESSHHHHHHHHHHHHHHHHHTTCEEEEEEEEETT--TSHHHHHHHHHHHHTTTTSEEEEESB--HHHHHHHH
T ss_pred Cceeeeeccccccccccchhhhhhhcccccceeccccccccc--ccchhhhhhhhhhccccceeeeeecc--cccccccc
Confidence 5689999999988 4455556666566555443444444 5677888888877 677889999888 24568899
Q ss_pred HHHHhcC-CCCCEEEEEeC
Q 007482 236 EALKQGK-VNKPVVAWVSG 253 (602)
Q Consensus 236 ~~~r~~~-~~KPVv~~k~G 253 (602)
+++.+.. .+.+.+.+-.+
T Consensus 197 ~~a~~~~~~~~~~~~i~~~ 215 (348)
T PF01094_consen 197 EAAYELGMTSGDYVWILTD 215 (348)
T ss_dssp HHHHHTTTSSTTSEEEEET
T ss_pred cchhhhhccccceeEEeec
Confidence 9987755 34455544444
No 389
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=29.82 E-value=2.6e+02 Score=29.59 Aligned_cols=24 Identities=13% Similarity=0.051 Sum_probs=16.9
Q ss_pred HHHHHHHHHhCCC-eeEcCCccccc
Q 007482 113 TKQLIAYARSNNK-VVIGPATVGGI 136 (602)
Q Consensus 113 ~~~l~~~a~~~g~-riiGPNc~G~~ 136 (602)
...|++.|+++|+ +++=+.+..++
T Consensus 121 t~nll~~~~~~~~~~~v~~SS~~vy 145 (348)
T PRK15181 121 FLNMLTAARDAHVSSFTYAASSSTY 145 (348)
T ss_pred HHHHHHHHHHcCCCeEEEeechHhh
Confidence 3577888888887 57766666555
No 390
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=29.80 E-value=3.8e+02 Score=26.68 Aligned_cols=121 Identities=11% Similarity=0.035 Sum_probs=55.4
Q ss_pred CCCCcEEEEe-e-CCcHHHHHHHhcCCeEEEEEeC----CCCCCccccccCceeecccccCCHHHHhhc-CCCccEEEEe
Q 007482 7 FSKTTQALFY-N-YKQLPIQRMLDFDFLCVAGIIN----PGAEGFQKLFFGQEEIAIPVHSTVEAACAA-HPMADVFINF 79 (602)
Q Consensus 7 ~~p~s~avv~-g-~~~~~~~~~~~~g~~~V~gv~~----p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~-~p~vDlavi~ 79 (602)
+...+|.||| | .+..++++|...|..-+.-+++ +..=++| +++.++-.|.+--..+++.+.+ .| ++-|..
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq-~l~~~~diG~~Ka~~~~~~l~~~np--~~~i~~ 95 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQ-ILHTEADVGQPKAEAAAERLRAINP--DVEIEA 95 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccc-cccChhhCCChHHHHHHHHHHHhCC--CCEEEE
Confidence 3445667674 1 2333889999988865444542 1111122 1222212233222222222222 23 444444
Q ss_pred cCChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCccc
Q 007482 80 SSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVG 134 (602)
Q Consensus 80 vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc~G 134 (602)
.+.....+. +++.- ++... ||.+..-.+ ....+-+.|+++++.++--.+.|
T Consensus 96 ~~~~i~~~~-~~~~~-~~~Dv-Vi~~~d~~~-~r~~l~~~~~~~~ip~i~~g~~g 146 (228)
T cd00757 96 YNERLDAEN-AEELI-AGYDL-VLDCTDNFA-TRYLINDACVKLGKPLVSGAVLG 146 (228)
T ss_pred ecceeCHHH-HHHHH-hCCCE-EEEcCCCHH-HHHHHHHHHHHcCCCEEEEEecc
Confidence 443321222 22222 34553 444444333 44567788889988866555444
No 391
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=29.77 E-value=2.8e+02 Score=29.35 Aligned_cols=104 Identities=20% Similarity=0.272 Sum_probs=68.5
Q ss_pred cEEEEecCChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCe--eEcCCcccccccCcccccccCCccc
Q 007482 74 DVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKV--VIGPATVGGIQAGAFKIGDTAGTID 151 (602)
Q Consensus 74 Dlavi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~r--iiGPNc~G~~~~~~~~l~~~~~~~~ 151 (602)
|..+-- ..+.++..++..+.+.|.+--|++++++|.-+-..+.+..+++|++ +|==+.+|.+.-..-++ +-++
T Consensus 121 ~~IlTh-~~S~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Dsa~~~~~~~vd~V--ivGa-- 195 (301)
T COG1184 121 DVILTH-SFSKTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDSAVGAFMSRVDKV--LVGA-- 195 (301)
T ss_pred CEEEEe-cCcHHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHHHcCCceEEEechHHHHHHHhCCEE--EECc--
Confidence 554433 3455788899999888988889999999988777888888899975 44444456654332011 0010
Q ss_pred ccccccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeE
Q 007482 152 NIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYE 190 (602)
Q Consensus 152 ~~~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~ 190 (602)
.....-| ++++++|+...++. +++.+..|--
T Consensus 196 ----d~I~~nG--~lvnkiGT~~lA~~--A~e~~~Pf~v 226 (301)
T COG1184 196 ----DAILANG--ALVNKIGTSPLALA--ARELRVPFYV 226 (301)
T ss_pred ----cceecCC--cEEeccchHHHHHH--HHHhCCCEEE
Confidence 0112345 99999999877764 5667776643
No 392
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=29.65 E-value=2.1e+02 Score=30.74 Aligned_cols=27 Identities=4% Similarity=-0.207 Sum_probs=18.9
Q ss_pred CccEEEEecCChhhHHHHHHHhhCCCCc
Q 007482 72 MADVFINFSSFRSAAASSMAALKQPTIR 99 (602)
Q Consensus 72 ~vDlavi~vp~~~~~~~~~e~~~~~gv~ 99 (602)
++|+++.++|... .....+...++|++
T Consensus 61 ~~D~v~~a~g~~~-s~~~a~~~~~~G~~ 87 (339)
T TIGR01296 61 GIDIALFSAGGSV-SKEFAPKAAKCGAI 87 (339)
T ss_pred CCCEEEECCCHHH-HHHHHHHHHHCCCE
Confidence 4899999998865 44555555557773
No 393
>PRK11096 ansB L-asparaginase II; Provisional
Probab=29.55 E-value=2.9e+02 Score=29.85 Aligned_cols=75 Identities=13% Similarity=0.085 Sum_probs=46.3
Q ss_pred CCCHHHHHHHhhcCCCccEEEEEEecCCCc-HHHHHHHHHhcC-CCCCEEEEEeCcCccCccccccccccCCcC-CCCcc
Q 007482 201 GSTLSDHILRFNNIPQVKMMVVLGELGGRD-EYSLVEALKQGK-VNKPVVAWVSGTCARLFKSEVQFGHAGAKS-GGEME 277 (602)
Q Consensus 201 dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~-~~~f~~~~r~~~-~~KPVv~~k~Gr~~~g~~~~aa~sHtgala-g~~~~ 277 (602)
+.+ .++++++.+. ..|.|++..= |..+ +..+.++++++. +++|||+. =|+..| ... +.+
T Consensus 243 G~~-~~~l~~~l~~-~~~GiVl~g~-G~Gn~~~~~~~~l~~a~~~GipVV~~--Sqc~~G-----------~v~~~~~-- 304 (347)
T PRK11096 243 NAS-DLPAKALVDA-GYDGIVSAGV-GNGNLYKTVFDTLATAAKNGVAVVRS--SRVPTG-----------ATTQDAE-- 304 (347)
T ss_pred CCC-HHHHHHHHhc-cCCEEEEEeE-CCCCCCHHHHHHHHHHHHCCCEEEEe--CCCCCC-----------CcCcccc--
Confidence 444 5778887754 5788886655 4433 468999998876 67888875 334333 111 111
Q ss_pred hHHHHHHHHHHcCCcccCCHHH
Q 007482 278 SAQAKNQALRDAGAVVPTSYEA 299 (602)
Q Consensus 278 ~a~~~~a~~~qaGvi~v~~~~e 299 (602)
..++++|++-..++.-
T Consensus 305 ------~~l~~~G~I~~g~lt~ 320 (347)
T PRK11096 305 ------VDDAKYGFVASGTLNP 320 (347)
T ss_pred ------cchhhCCEEECCCCCH
Confidence 1347788888887553
No 394
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=29.46 E-value=1.6e+02 Score=31.31 Aligned_cols=77 Identities=12% Similarity=0.068 Sum_probs=56.1
Q ss_pred cCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHhcCCCCCEEEEEeCcCccCccccc
Q 007482 184 VTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEV 263 (602)
Q Consensus 184 ~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~~~KPVv~~k~Gr~~~g~~~~a 263 (602)
+.+|+..+|+-|-.. .=+..|+++.+..-+..++|+|=-- ++-..-++.+.+..+.|.|+++.+.+-..| -.|
T Consensus 113 ~~~Gv~~vi~ggqt~--nPS~~dl~~Ai~~~~a~~VivLPNn---~ni~~aa~qa~~~~~~~~v~VipTks~~qG--laA 185 (313)
T PF13684_consen 113 RSLGVDVVISGGQTM--NPSTEDLLNAIEKVGADEVIVLPNN---KNIILAAEQAARLSEDKNVVVIPTKSIPQG--LAA 185 (313)
T ss_pred HhCCCeEEEeCCCCC--CCCHHHHHHHHHhCCCCeEEEEeCC---chHHHHHHHHHHHhcCCCEEEEecCCHHHH--HHH
Confidence 478999999998776 6678899999999999999987544 444444444455455667999988887777 344
Q ss_pred cccc
Q 007482 264 QFGH 267 (602)
Q Consensus 264 a~sH 267 (602)
...|
T Consensus 186 l~~~ 189 (313)
T PF13684_consen 186 LLVF 189 (313)
T ss_pred HHHh
Confidence 4444
No 395
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=29.44 E-value=3.6e+02 Score=29.64 Aligned_cols=150 Identities=13% Similarity=0.068 Sum_probs=80.6
Q ss_pred HHHHHHHhhCCCCcEEEEecCCCCHH---HHHHHHHHHH-hCCCeeEcCCcccccccCcccccc-cCCccccccccc---
Q 007482 86 AASSMAALKQPTIRVVAIIAEGVPEA---DTKQLIAYAR-SNNKVVIGPATVGGIQAGAFKIGD-TAGTIDNIIHCK--- 157 (602)
Q Consensus 86 ~~~~~e~~~~~gv~~~viis~Gf~E~---~~~~l~~~a~-~~g~riiGPNc~G~~~~~~~~l~~-~~~~~~~~~p~~--- 157 (602)
...+.+.+.+...+.++|+++..+|. |.+.+.+.++ +.+++|+.=+|-|+-.....+... +..-.....+..
T Consensus 74 ~~~I~~~~~~~~p~~I~v~~tC~~~iIGdDi~~v~~~~~~~~~~~vi~v~t~gf~g~~~~g~~~al~~l~~~~~~~~~~~ 153 (430)
T cd01981 74 VENITRKDKEEKPDLIVLTPTCTSSILQEDLQNFVRAAGLSSKSPVLPLDVNHYRVNELQAADETFEQLVRFYAEKARPQ 153 (430)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccHHHHhhCHHHHHHHhhhccCCCeEEecCCCccchHHHHHHHHHHHHHHHHhcccccc
Confidence 44555555555678888889888887 4445544443 458889988888886432101000 000000000000
Q ss_pred -----CCCCCcEEEEecC------hhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEE-EEe
Q 007482 158 -----LYRPGSVGFVSKS------GGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVV-LGE 225 (602)
Q Consensus 158 -----~~~~G~valvSQS------G~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~l-y~E 225 (602)
...+..|-++.-+ .+=..++...+...|+.+..+++.| .++.|+- +=++-+.-++ +-+
T Consensus 154 ~~~~~~~~~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~~~~~~------~~~~~i~----~~~~A~lniv~~~~ 223 (430)
T cd01981 154 GTPREKTEKPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNVVIPEG------ASVDDLN----ELPKAWFNIVPYRE 223 (430)
T ss_pred ccccccCCCCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEEEEcCC------CCHHHHH----hhhhCeEEEEecHH
Confidence 1245678888543 2334677777887788776655533 3344443 3344444443 333
Q ss_pred cCCCcHHHHHHHHHhcCCCCCEEEE
Q 007482 226 LGGRDEYSLVEALKQGKVNKPVVAW 250 (602)
Q Consensus 226 ~g~~~~~~f~~~~r~~~~~KPVv~~ 250 (602)
.+....+.+++ +.++|.+..
T Consensus 224 ----~~~~~a~~L~~-~~GiP~~~~ 243 (430)
T cd01981 224 ----YGLSAALYLEE-EFGMPSVKI 243 (430)
T ss_pred ----HHHHHHHHHHH-HhCCCeEec
Confidence 34556666654 368897543
No 396
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=29.34 E-value=1.7e+02 Score=29.64 Aligned_cols=46 Identities=13% Similarity=-0.005 Sum_probs=25.2
Q ss_pred CCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHHHHHHHcCCcc
Q 007482 243 VNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVV 293 (602)
Q Consensus 243 ~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~ 293 (602)
..||||+..-|.+-.| +-.-+..+-=.++.++ ..|.--.-+.|+..
T Consensus 93 ~~kPvIaav~G~a~Gg-G~~lal~cD~~ia~~~----a~f~~pe~~~Gl~p 138 (249)
T PRK07110 93 CPIPVIAAMQGHAIGG-GLVLGLYADIVVLSRE----SVYTANFMKYGFTP 138 (249)
T ss_pred CCCCEEEEecCceech-HHHHHHhCCEEEEeCC----CEecCchhccCCCC
Confidence 7899999998877544 2333333333333333 23333345666654
No 397
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=29.30 E-value=99 Score=31.47 Aligned_cols=53 Identities=28% Similarity=0.417 Sum_probs=32.8
Q ss_pred HHHHHHHhhcCCCccEEEEEEecCCC------cH------------HHHHH----HHHhcC-CCCCEEEEEeCcCccC
Q 007482 204 LSDHILRFNNIPQVKMMVVLGELGGR------DE------------YSLVE----ALKQGK-VNKPVVAWVSGTCARL 258 (602)
Q Consensus 204 ~~d~l~~l~~Dp~t~~I~ly~E~g~~------~~------------~~f~~----~~r~~~-~~KPVv~~k~Gr~~~g 258 (602)
+.+.++.+.+||++|+|++..+ | + |- +.++. ..++.. ..||||+..-|-.-.|
T Consensus 37 l~~al~~~~~d~~vr~vvltg~-g-~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 112 (257)
T COG1024 37 LAEALDEAEADPDVRVVVLTGA-G-KAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNGYALGG 112 (257)
T ss_pred HHHHHHHHhhCCCeEEEEEECC-C-CceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEcceEeec
Confidence 4566677777777777777777 5 3 11 11222 233333 7999999998866544
No 398
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=29.12 E-value=2.4e+02 Score=29.10 Aligned_cols=26 Identities=8% Similarity=-0.068 Sum_probs=17.3
Q ss_pred CcEEEEeeCC-cH-HHHHHHhcCCeEEE
Q 007482 10 TTQALFYNYK-QL-PIQRMLDFDFLCVA 35 (602)
Q Consensus 10 ~s~avv~g~~-~~-~~~~~~~~g~~~V~ 35 (602)
++|-|+||.+ |+ +++.|.+.|+.+++
T Consensus 1 m~ILvlGGT~egr~la~~L~~~g~~v~~ 28 (256)
T TIGR00715 1 MTVLLMGGTVDSRAIAKGLIAQGIEILV 28 (256)
T ss_pred CeEEEEechHHHHHHHHHHHhCCCeEEE
Confidence 3567777733 44 77788888888643
No 399
>PRK05869 enoyl-CoA hydratase; Validated
Probab=29.03 E-value=83 Score=31.45 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=13.2
Q ss_pred CCCCEEEEEeCcCccC
Q 007482 243 VNKPVVAWVSGTCARL 258 (602)
Q Consensus 243 ~~KPVv~~k~Gr~~~g 258 (602)
..||||+.--|..-.|
T Consensus 98 ~~kPvIAav~G~a~Gg 113 (222)
T PRK05869 98 IPKPTVAAITGYALGA 113 (222)
T ss_pred CCCCEEEEEcCEeecH
Confidence 7899999998877544
No 400
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=28.84 E-value=2e+02 Score=29.74 Aligned_cols=10 Identities=10% Similarity=0.501 Sum_probs=8.4
Q ss_pred HHHHHHhcCC
Q 007482 22 PIQRMLDFDF 31 (602)
Q Consensus 22 ~~~~~~~~g~ 31 (602)
++++|++.|+
T Consensus 13 iv~~Ll~~g~ 22 (280)
T PF01073_consen 13 IVRQLLERGY 22 (280)
T ss_pred HHHHHHHCCC
Confidence 8889999883
No 401
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=28.73 E-value=7.8e+02 Score=26.67 Aligned_cols=213 Identities=16% Similarity=0.188 Sum_probs=113.4
Q ss_pred ccCCHHHHhhcCCCccEEEEecCChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCC--CeeEcCCccccc
Q 007482 59 VHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNN--KVVIGPATVGGI 136 (602)
Q Consensus 59 ~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g--~riiGPNc~G~~ 136 (602)
+|..+..+.++. +-.--||+.++--....+-=+|...|+|+.|++..+-|....+. .|.+| +.+.|-|.-=-.
T Consensus 60 A~n~i~~Ls~e~-~~~~gViaaSaGNHaQGvA~aa~~lGi~a~IvMP~~tp~~Kv~a----~r~~GaeVil~g~~~dda~ 134 (347)
T COG1171 60 AYNKLSSLSEEE-ERAAGVIAASAGNHAQGVAYAAKRLGIKATIVMPETTPKIKVDA----TRGYGAEVILHGDNFDDAY 134 (347)
T ss_pred HHHHHHhcChhh-hhcCceEEecCCcHHHHHHHHHHHhCCCEEEEecCCCcHHHHHH----HHhcCCEEEEECCCHHHHH
Confidence 565566543221 12344666666444577777888899999999998877643222 23333 344454431000
Q ss_pred ccCcccccc-cCCcccccccccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhc-C
Q 007482 137 QAGAFKIGD-TAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNN-I 214 (602)
Q Consensus 137 ~~~~~~l~~-~~~~~~~~~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~-D 214 (602)
.-.. .+-. -+.+|-+ | + -+--++.--|+++.++++.+.+. -=.-+|++|+--. .+-+.-|+.. .
T Consensus 135 ~~a~-~~a~~~G~~~i~--p---f--D~p~viAGQGTi~lEileq~~~~--~d~v~vpvGGGGL----isGia~~~k~~~ 200 (347)
T COG1171 135 AAAE-ELAEEEGLTFVP--P---F--DDPDVIAGQGTIALEILEQLPDL--PDAVFVPVGGGGL----ISGIATALKALS 200 (347)
T ss_pred HHHH-HHHHHcCCEEeC--C---C--CCcceeecccHHHHHHHHhcccc--CCEEEEecCccHH----HHHHHHHHHHhC
Confidence 0000 0000 0111110 1 1 12345666799999998876654 2345788888642 2233344433 5
Q ss_pred CCccEEEEEEecCCCcHHHHHHHHHhcCCCCCEEEEE-eCcCccCccccccccccCCcCCCCcchHHHHHHHHHHcCCcc
Q 007482 215 PQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWV-SGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVV 293 (602)
Q Consensus 215 p~t~~I~ly~E~g~~~~~~f~~~~r~~~~~KPVv~~k-~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~ 293 (602)
|+||+|.+--| +...- .+.++ .+++++.++ .++-..| .+..+-|. ..|+-+-+-.-=+.
T Consensus 201 p~~~vIGVEp~-~a~~~---~~Sl~---~G~~~~~~~~~~tiaDG----~av~~~g~---------~tf~i~~~~vd~~v 260 (347)
T COG1171 201 PEIKVIGVEPE-GAPSM---YASLK---AGKIVVVLPDVGTIADG----LAVKRPGD---------LTFEILRELVDDIV 260 (347)
T ss_pred CCCeEEEEeeC-CChHH---HHHHH---cCCceeecCCCCccccc----cccCCCCH---------HHHHHHHHcCCcEE
Confidence 77999998888 55442 22222 476666666 8888776 44555443 34443333333233
Q ss_pred cCCHHHHHHHHHHHHHh
Q 007482 294 PTSYEAFESAIKETFEK 310 (602)
Q Consensus 294 v~~~~el~~~~~~~~~~ 310 (602)
.=|-+|+...++.++.+
T Consensus 261 ~V~e~ei~~am~~l~~~ 277 (347)
T COG1171 261 LVDEDEICAAMRDLFER 277 (347)
T ss_pred EECHHHHHHHHHHHHhc
Confidence 33445666666666654
No 402
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=28.69 E-value=5.3e+02 Score=24.73 Aligned_cols=175 Identities=11% Similarity=0.032 Sum_probs=80.4
Q ss_pred ccCCHHHHhhcCCCccEEEEecCChh-hHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCcccccc
Q 007482 59 VHSTVEAACAAHPMADVFINFSSFRS-AAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQ 137 (602)
Q Consensus 59 ~y~sv~~i~~~~p~vDlavi~vp~~~-~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc~G~~~ 137 (602)
....+.+..++. .+++.+....... .....++.+.+.++.++|+.+.-. + ... ..+.+++.++.++..++----.
T Consensus 17 ~~~g~~~~~~~~-g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~-~-~~~-~~~~l~~~~ip~v~~~~~~~~~ 92 (264)
T cd01537 17 VLKGIEEAAKAA-GYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDL-T-APT-IVKLARKAGIPVVLVDRDIPDG 92 (264)
T ss_pred HHHHHHHHHHHc-CCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCC-c-chh-HHHHhhhcCCCEEEeccCCCCC
Confidence 444455554544 3777666544321 234566666667888877754322 2 222 4677788899887655421000
Q ss_pred cCcccccccCCcccccccc--cCCCCCcEEEEecChh--H----HHHHHHHHHhcC-CceeEEeeccCCCCCCCCHHHHH
Q 007482 138 AGAFKIGDTAGTIDNIIHC--KLYRPGSVGFVSKSGG--M----SNELYNTIARVT-DGIYEGIAIGGDVFPGSTLSDHI 208 (602)
Q Consensus 138 ~~~~~l~~~~~~~~~~~p~--~~~~~G~valvSQSG~--l----~~~~~~~~~~~g-~G~s~~vs~Gn~~~~dv~~~d~l 208 (602)
.....++.-+......... ......+|++++.+.. . ...+...+.+.+ +.....+...... +-....+.
T Consensus 93 ~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 170 (264)
T cd01537 93 DRVPSVGSDNEQAGYLAGEHLAEKGHRRIALLAGPLGSSTARERVAGFKDALKEAGPIEIVLVQEGDWDA--EKGYQAAE 170 (264)
T ss_pred cccceEecCcHHHHHHHHHHHHHhcCCcEEEEECCCCCCcHHHHHHHHHHHHHHcCCcChhhhccCCCCH--HHHHHHHH
Confidence 0000110000000000000 0113568888876533 1 233334444444 3222222222222 22234455
Q ss_pred HHhhcCCCccEEEEEEecCCCcHHHHHHHHHhcC
Q 007482 209 LRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGK 242 (602)
Q Consensus 209 ~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~ 242 (602)
+++...|+..+|+..-. .....+++++++..
T Consensus 171 ~~l~~~~~~~~i~~~~~---~~a~~~~~~~~~~g 201 (264)
T cd01537 171 ELLTAHPDPTAIFAAND---DMALGALRALREAG 201 (264)
T ss_pred HHHhcCCCCCEEEEcCc---HHHHHHHHHHHHhC
Confidence 66666676666655433 34445667777654
No 403
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=28.66 E-value=2.2e+02 Score=30.54 Aligned_cols=78 Identities=22% Similarity=0.311 Sum_probs=47.1
Q ss_pred CCCHHHHHHHhhcCCCccEEEEEEecCCCc-H--HHHHHHHHhcC-CCCCEEEEEeCcCccCccccccccccCCcC-CCC
Q 007482 201 GSTLSDHILRFNNIPQVKMMVVLGELGGRD-E--YSLVEALKQGK-VNKPVVAWVSGTCARLFKSEVQFGHAGAKS-GGE 275 (602)
Q Consensus 201 dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~-~--~~f~~~~r~~~-~~KPVv~~k~Gr~~~g~~~~aa~sHtgala-g~~ 275 (602)
+.+ .++++++.++ ..+.|++-.= |..+ + ..|.++++++. +++|||+. -|+..| ... +.+
T Consensus 220 G~~-~~~l~~~~~~-~~~GiVl~~~-G~Gn~p~~~~~~~~l~~~~~~Gi~VV~~--Sr~~~G-----------~v~~~~Y 283 (335)
T PRK09461 220 GIS-AEVVRNFLRQ-PVKALILRSY-GVGNAPQNPALLQELKEASERGIVVVNL--TQCMSG-----------KVNMGGY 283 (335)
T ss_pred CCC-HHHHHHHHhC-CCCEEEEccC-CCCCCCCCHHHHHHHHHHHHCCCEEEEe--CCCCCC-----------cCCccch
Confidence 444 5788888765 4676655443 3333 3 67999998876 77888775 233332 221 222
Q ss_pred cchHHHHHHHHHHcCCcccCCHHH
Q 007482 276 MESAQAKNQALRDAGAVVPTSYEA 299 (602)
Q Consensus 276 ~~~a~~~~a~~~qaGvi~v~~~~e 299 (602)
+. -..++++|++...++.-
T Consensus 284 ----~~-g~~l~~~G~i~~g~lt~ 302 (335)
T PRK09461 284 ----AT-GNALAHAGVISGADMTV 302 (335)
T ss_pred ----hh-hHHHHhCCEEECCCCCH
Confidence 11 13478899999988754
No 404
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=28.65 E-value=92 Score=31.97 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=12.7
Q ss_pred CCCCEEEEEeCcCccC
Q 007482 243 VNKPVVAWVSGTCARL 258 (602)
Q Consensus 243 ~~KPVv~~k~Gr~~~g 258 (602)
..||||+..-|..-.|
T Consensus 100 ~~kPvIaaV~G~a~Gg 115 (265)
T PRK05674 100 LKIPTLAVVQGAAFGG 115 (265)
T ss_pred CCCCEEEEEcCEEEec
Confidence 6899999988866544
No 405
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=28.62 E-value=6.7e+02 Score=25.89 Aligned_cols=73 Identities=10% Similarity=-0.075 Sum_probs=32.3
Q ss_pred HHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEE-EEEecCCCcHHHHHHHHHhcCCCCCEEEEEeC
Q 007482 177 LYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMV-VLGELGGRDEYSLVEALKQGKVNKPVVAWVSG 253 (602)
Q Consensus 177 ~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~-ly~E~g~~~~~~f~~~~r~~~~~KPVv~~k~G 253 (602)
++.++.+ ..|..++.-++++.-.+-+..+.+....+....+++. ...+ .....|...+.+++..||-+++-.+
T Consensus 122 ~~~~~~~-~~g~~~v~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~---~~~~d~~~~v~~l~~~~pd~v~~~~ 195 (333)
T cd06358 122 AIPWLAE-EKGARRWYLIGNDYVWPRGSLAAAKRYIAELGGEVVGEEYVP---LGTTDFTSVLERIAASGADAVLSTL 195 (333)
T ss_pred HHHHHHH-hcCCCeEEEEeccchhhHHHHHHHHHHHHHcCCEEeeeeeec---CChHHHHHHHHHHHHcCCCEEEEeC
Confidence 3444432 2344555444443211334445554333444444432 1222 2234555555555556775555444
No 406
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=28.60 E-value=3.2e+02 Score=29.35 Aligned_cols=94 Identities=14% Similarity=0.039 Sum_probs=51.8
Q ss_pred CCcH-HHHHHHhcCCeEEEEEeCCCCCC----ccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhHHHHHHH
Q 007482 18 YKQL-PIQRMLDFDFLCVAGIINPGAEG----FQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAA 92 (602)
Q Consensus 18 ~~~~-~~~~~~~~g~~~V~gv~~p~~~~----~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~~e~ 92 (602)
.+|. +..+|.+.|+.+ ...+ +.... ..+.+ .-.|+.+..+..++.. +.|++|+++|....+.++++.
T Consensus 30 ~gG~~MA~~La~aG~~V-~v~D-r~~~~l~~~~~~~l---~~~Gi~~asd~~eaa~---~ADvVIlaVP~~~~v~~Vl~~ 101 (342)
T PRK12557 30 YGGSRMAIEFAEAGHDV-VLAE-PNRSILSEELWKKV---EDAGVKVVSDDAEAAK---HGEIHILFTPFGKKTVEIAKN 101 (342)
T ss_pred cCHHHHHHHHHhCCCeE-EEEE-CCHHHhhHHHHHHH---HHCCCEEeCCHHHHHh---CCCEEEEECCCcHHHHHHHHH
Confidence 3344 667788888875 2444 42210 00001 1246777778877654 479999999987546777766
Q ss_pred hhCC-CCcEEEEecCCCCHHHH-HHHHHH
Q 007482 93 LKQP-TIRVVAIIAEGVPEADT-KQLIAY 119 (602)
Q Consensus 93 ~~~~-gv~~~viis~Gf~E~~~-~~l~~~ 119 (602)
+... .-+.+||-++..+.... +.+.+.
T Consensus 102 L~~~L~~g~IVId~ST~~~~~~s~~l~~~ 130 (342)
T PRK12557 102 ILPHLPENAVICNTCTVSPVVLYYSLEGE 130 (342)
T ss_pred HHhhCCCCCEEEEecCCCHHHHHHHHHHH
Confidence 5421 12235555555554433 444443
No 407
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=28.48 E-value=1.6e+02 Score=31.27 Aligned_cols=85 Identities=20% Similarity=0.297 Sum_probs=50.7
Q ss_pred CCCCCHHHHHHHhhcCCCccEEEEEEecCCCc-HHHHHHHHHhcC-CCCCEEEEEeCcCccCccccccccccCCcCCCCc
Q 007482 199 FPGSTLSDHILRFNNIPQVKMMVVLGELGGRD-EYSLVEALKQGK-VNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEM 276 (602)
Q Consensus 199 ~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~-~~~f~~~~r~~~-~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~ 276 (602)
+++.+ .++++++.++ ..+.|++-.= |..+ +.+++++++++. ++.|||+. -|+..| .....+
T Consensus 218 ~pG~~-~~~l~~~~~~-g~~GiVl~~~-G~Gn~p~~~~~~l~~a~~~gi~VV~~--Sq~~~G-----------~v~~~y- 280 (323)
T cd00411 218 YPGIS-AEAVRAFLRA-GYKGIVLAGY-GAGNVPTDLIDELEEAAERGVVVVNS--TQCEEG-----------AVTRDY- 280 (323)
T ss_pred CCCCC-HHHHHHHHhC-CCCEEEEEeE-CCCCCCHHHHHHHHHHHHCCCEEEEe--cCCCCC-----------cccCCc-
Confidence 34555 5688888754 5777766555 4443 458999998876 67787775 333333 111111
Q ss_pred chHHHHHHHHHHcCCcccCCHHHHHHHH
Q 007482 277 ESAQAKNQALRDAGAVVPTSYEAFESAI 304 (602)
Q Consensus 277 ~~a~~~~a~~~qaGvi~v~~~~el~~~~ 304 (602)
. +...++++|++...++.---..+
T Consensus 281 ---~-~g~~l~~~G~i~~~~lt~e~A~~ 304 (323)
T cd00411 281 ---E-VGGALAKYGIIASGDLNPEKARI 304 (323)
T ss_pred ---c-cccchhhCCEEECCCCCHHHHHH
Confidence 0 11257889999988865433333
No 408
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=28.45 E-value=87 Score=32.34 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=13.0
Q ss_pred CCCCEEEEEeCcCccC
Q 007482 243 VNKPVVAWVSGTCARL 258 (602)
Q Consensus 243 ~~KPVv~~k~Gr~~~g 258 (602)
..||||+..-|..-.|
T Consensus 108 ~~kPvIaav~G~a~Gg 123 (276)
T PRK05864 108 LHQPVIAAVNGPAIGG 123 (276)
T ss_pred CCCCEEEEECCEeehh
Confidence 6899999998876654
No 409
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=28.42 E-value=3.2e+02 Score=30.73 Aligned_cols=185 Identities=10% Similarity=0.019 Sum_probs=103.8
Q ss_pred ceeecccccCCHHHHhhcCCCccEEEEecCChhhHHHHHHHhhCCCCcEEEEecCCCCHH---HHHHHHHHH-HhCCCee
Q 007482 52 QEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEA---DTKQLIAYA-RSNNKVV 127 (602)
Q Consensus 52 ~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~---~~~~l~~~a-~~~g~ri 127 (602)
..++|-|-|.. +|+ ++ -|++-.+=..+.-...+.|..++...+.++++++-.+|. |.+.+.+.+ ++.|++|
T Consensus 57 ~~~~~~~r~~~-tdl-~E---~Di~~~~g~~~~L~~~i~ei~~~~~p~~ifv~~TC~t~iIGdDle~va~~~~~~~gipV 131 (457)
T CHL00073 57 VMIFAEPRYAM-AEL-EE---GDISAQLNDYEELKRLCLQIKKDRNPSVIVWIGTCTTEIIKMDLEGMAPKLEAEIGIPI 131 (457)
T ss_pred CcccCCcccee-ccc-Cc---hhhhhhcCCHHHHHHHHHHHHHhCCCCEEEEEccCcHHhhccCHHHHHHHHHHhhCCCE
Confidence 34555576766 775 43 477633333333234455556667789999998888776 666665544 4679999
Q ss_pred EcCCccccc-ccCcccccccCCcccccccc----------------------------cCCCCCcEEEEec-ChhHHHHH
Q 007482 128 IGPATVGGI-QAGAFKIGDTAGTIDNIIHC----------------------------KLYRPGSVGFVSK-SGGMSNEL 177 (602)
Q Consensus 128 iGPNc~G~~-~~~~~~l~~~~~~~~~~~p~----------------------------~~~~~G~valvSQ-SG~l~~~~ 177 (602)
+==+|-||- +... +.++.-+......+. ....+..|-++.- -.+-...+
T Consensus 132 V~v~~~Gf~~~~tq-g~d~~Laa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~G~~~~~~~~~i 210 (457)
T CHL00073 132 VVARANGLDYAFTQ-GEDTVLAAMAHRCPEQEVSTSESKETKQKTQSSLFSNKEKSLVKYKTHPPLVLFGSLPSTVASQL 210 (457)
T ss_pred EEEeCCCccCcCCc-chhHHHHHhHHhhhhhhcCccccccccccccccccccccccccccCCCCcEEEEEecCcccHHHH
Confidence 999999997 4333 221100000000010 0112335655532 12224456
Q ss_pred HHHHHhcCCceeEEeeccCC--------C-CC-CCC--HHHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHhcC
Q 007482 178 YNTIARVTDGIYEGIAIGGD--------V-FP-GST--LSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGK 242 (602)
Q Consensus 178 ~~~~~~~g~G~s~~vs~Gn~--------~-~~-dv~--~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~ 242 (602)
-..+.+.|+.+..+++.+.- . +. .++ ......||++.-++..+.+=.-+|+.+-.+|++.+.+..
T Consensus 211 ~~lL~~lGI~v~~~lp~~~~~eL~~~~~~~~~c~~~P~ls~aa~~Le~~~gvp~~~~P~PiGi~~Td~fLr~Ia~~~ 287 (457)
T CHL00073 211 TLELKRQGIKVSGWLPSQRYTDLPSLGEGVYVCGVNPFLSRTATTLMRRRKCKLIGAPFPIGPDGTRAWIEKICSVF 287 (457)
T ss_pred HHHHHHcCCeEeEEeCCCCHHHHHhhCcccEEEEcCcchHHHHHHHHHHhCCceeecCCcCcHHHHHHHHHHHHHHh
Confidence 66778889999877773221 0 00 011 146677777776766665533367788888888777653
No 410
>PLN02231 alanine transaminase
Probab=28.42 E-value=3.7e+02 Score=30.69 Aligned_cols=34 Identities=18% Similarity=0.570 Sum_probs=25.8
Q ss_pred CCcEEEEecCC------CCHHHHHHHHHHHHhCCCeeEcC
Q 007482 97 TIRVVAIIAEG------VPEADTKQLIAYARSNNKVVIGP 130 (602)
Q Consensus 97 gv~~~viis~G------f~E~~~~~l~~~a~~~g~riiGP 130 (602)
++|.+++++-+ ++++..++|+++|+++|+.||==
T Consensus 271 ~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~D 310 (534)
T PLN02231 271 TVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLAD 310 (534)
T ss_pred CeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 57777777643 45667899999999999887633
No 411
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=28.33 E-value=89 Score=31.91 Aligned_cols=16 Identities=38% Similarity=0.424 Sum_probs=12.9
Q ss_pred CCCCEEEEEeCcCccC
Q 007482 243 VNKPVVAWVSGTCARL 258 (602)
Q Consensus 243 ~~KPVv~~k~Gr~~~g 258 (602)
..||||+..-|..-.|
T Consensus 98 ~~kPvIaav~G~a~Gg 113 (262)
T PRK05995 98 CPKPVIARVHGDAYAG 113 (262)
T ss_pred CCCCEEEEECCEEEhh
Confidence 7899999998876543
No 412
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=27.95 E-value=1.1e+02 Score=28.92 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=38.1
Q ss_pred CHHHHHHHhhcCCCccEEEEEEe-cCC--CcHHHHHHHHHhcCCCCCEEEEEeCcCcc
Q 007482 203 TLSDHILRFNNIPQVKMMVVLGE-LGG--RDEYSLVEALKQGKVNKPVVAWVSGTCAR 257 (602)
Q Consensus 203 ~~~d~l~~l~~Dp~t~~I~ly~E-~g~--~~~~~f~~~~r~~~~~KPVv~~k~Gr~~~ 257 (602)
.+.+-|.++.+++.++.|.+|+. +|+ .++....+.+++ .++||+++..|...+
T Consensus 16 ~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~--~~~~v~~~~~g~aaS 71 (162)
T cd07013 16 QFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKF--IKADVVTIIDGLAAS 71 (162)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHh--cCCCceEEEEeehhh
Confidence 35567788999999999999999 333 234566667776 457888887775544
No 413
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=27.74 E-value=79 Score=32.62 Aligned_cols=93 Identities=18% Similarity=0.131 Sum_probs=55.8
Q ss_pred HHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCee---------------EcCCcccccccCcccccccCCcccc
Q 007482 88 SSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVV---------------IGPATVGGIQAGAFKIGDTAGTIDN 152 (602)
Q Consensus 88 ~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~ri---------------iGPNc~G~~~~~~~~l~~~~~~~~~ 152 (602)
.+.|+.. .|..++++|.+=+++.+..+|.+.|++.|+-. .|+.-+||-|..-..+ ......
T Consensus 123 QI~eA~~-~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf---~vd~~~ 198 (254)
T PF00218_consen 123 QIYEARA-AGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTF---EVDLNR 198 (254)
T ss_dssp HHHHHHH-TT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTC---CBHTHH
T ss_pred HHHHHHH-cCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCc---ccChHH
Confidence 4555554 89999999998888877788999999888753 3777778765432111 011110
Q ss_pred cccccCCCCCcEEEEecChhHHHHHHHHHHhc
Q 007482 153 IIHCKLYRPGSVGFVSKSGGMSNELYNTIARV 184 (602)
Q Consensus 153 ~~p~~~~~~G~valvSQSG~l~~~~~~~~~~~ 184 (602)
.......-|.++-+||-||--+.+=+..+.+.
T Consensus 199 ~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~ 230 (254)
T PF00218_consen 199 TEELAPLIPKDVIVISESGIKTPEDARRLARA 230 (254)
T ss_dssp HHHHHCHSHTTSEEEEESS-SSHHHHHHHCTT
T ss_pred HHHHHhhCccceeEEeecCCCCHHHHHHHHHC
Confidence 00001123567999999998776655555443
No 414
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=27.71 E-value=2.6e+02 Score=28.67 Aligned_cols=24 Identities=4% Similarity=-0.110 Sum_probs=16.2
Q ss_pred cEEEEee--CCcH-HHHHHHhcCCeEE
Q 007482 11 TQALFYN--YKQL-PIQRMLDFDFLCV 34 (602)
Q Consensus 11 s~avv~g--~~~~-~~~~~~~~g~~~V 34 (602)
++.|.|| .-|+ +++.|++.|++++
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~~V~ 28 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGEEVR 28 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCCEEE
Confidence 5666653 3344 7788888999864
No 415
>PF06230 DUF1009: Protein of unknown function (DUF1009); InterPro: IPR010415 This is a family of uncharacterised bacterial proteins.
Probab=27.66 E-value=66 Score=32.34 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=30.6
Q ss_pred HHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEc
Q 007482 87 ASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIG 129 (602)
Q Consensus 87 ~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiG 129 (602)
+..++.+.+.|.+.+.+=+.+-=-.+.+++++.|.++|+-|+|
T Consensus 172 ~~Tv~~~~~ag~~~laveAg~tl~ld~~~~i~~Ad~~gi~i~G 214 (214)
T PF06230_consen 172 PDTVENAAEAGLAGLAVEAGKTLILDREEVIALADKAGIFIVG 214 (214)
T ss_pred HHHHHHHHHcCCeEEEEecCcEEEecHHHHHHHHHHcCCEEeC
Confidence 3466677777777766655432222678999999999999887
No 416
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=27.59 E-value=4.3e+02 Score=29.48 Aligned_cols=105 Identities=16% Similarity=0.175 Sum_probs=58.0
Q ss_pred CCcEEEEeeCCc---HHHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCC---
Q 007482 9 KTTQALFYNYKQ---LPIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSF--- 82 (602)
Q Consensus 9 p~s~avv~g~~~---~~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~--- 82 (602)
+.++++|.|.+. ++++.+.+.|+..|.....+... . +... ..|-.+...|+
T Consensus 4 ~~~~vLi~~~geia~~ii~aa~~lG~~~v~~~s~~d~~--------------~--~~~~-------~aD~~~~i~p~~~~ 60 (467)
T PRK12833 4 RIRKVLVANRGEIAVRIIRAARELGMRTVAACSDADRD--------------S--LAAR-------MADEAVHIGPSHAA 60 (467)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHcCCeEEEEECCCCCC--------------C--hhHH-------hCCEEEecCCCCcc
Confidence 456677755332 37778888999865332211111 0 1111 13555533332
Q ss_pred --hhhHHHHHHHhhCCCCcEEEEecCCC-CHHHHHHHHHHHHhCCCeeEcCCcccccccC
Q 007482 83 --RSAAASSMAALKQPTIRVVAIIAEGV-PEADTKQLIAYARSNNKVVIGPATVGGIQAG 139 (602)
Q Consensus 83 --~~~~~~~~e~~~~~gv~~~viis~Gf-~E~~~~~l~~~a~~~g~riiGPNc~G~~~~~ 139 (602)
....+.+++.|.+.++..++- ..|| +|.. .+.+.+.+.|+.++||+.--+-...
T Consensus 61 ~~y~d~~~i~~~a~~~~~daI~p-g~g~lsE~~--~~~~~~e~~gi~~igps~~ai~~~~ 117 (467)
T PRK12833 61 KSYLNPAAILAAARQCGADAIHP-GYGFLSENA--AFAEAVEAAGLIFVGPDAQTIRTMG 117 (467)
T ss_pred ccccCHHHHHHHHHHhCCCEEEE-CCCccccCH--HHHHHHHHcCCCccCCCHHHHHHhc
Confidence 112457888898888876554 3455 4432 3455567789999999764443333
No 417
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=27.40 E-value=5e+02 Score=25.71 Aligned_cols=72 Identities=11% Similarity=0.088 Sum_probs=42.7
Q ss_pred cccCCHHHHhhcCCCccEEEEecCCh-hhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCc
Q 007482 58 PVHSTVEAACAAHPMADVFINFSSFR-SAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPAT 132 (602)
Q Consensus 58 ~~y~sv~~i~~~~p~vDlavi~vp~~-~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc 132 (602)
..+.++.+...+. ..++.+...... ......++.+...++.++|+.+. ... .....++.+++.++.++.-|+
T Consensus 16 ~~~~~~~~~a~~~-g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~-~~~-~~~~~i~~~~~~~iPvV~~~~ 88 (273)
T cd06309 16 AETKSIKDAAEKR-GFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPV-VET-GWDPVLKEAKAAGIPVILVDR 88 (273)
T ss_pred HHHHHHHHHHHhc-CCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCC-ccc-cchHHHHHHHHCCCCEEEEec
Confidence 4556677766655 377776543221 12235677777788988877542 222 112345667788988777664
No 418
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=27.38 E-value=92 Score=35.36 Aligned_cols=101 Identities=14% Similarity=-0.018 Sum_probs=52.6
Q ss_pred CCCCCcEEEEe-eCCcH-HHHHHHhcCCeE-EEEEeCCCCCCcc--------ccc--cCc--------eeecccccCCHH
Q 007482 6 LFSKTTQALFY-NYKQL-PIQRMLDFDFLC-VAGIINPGAEGFQ--------KLF--FGQ--------EEIAIPVHSTVE 64 (602)
Q Consensus 6 l~~p~s~avv~-g~~~~-~~~~~~~~g~~~-V~gv~~p~~~~~~--------~~~--~g~--------~v~G~~~y~sv~ 64 (602)
|.+.++|+||| |..|. +..++...|+.+ ++-++ |..-.+. +.+ .|. -..-+..-.+++
T Consensus 2 ~~~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~-~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~ 80 (503)
T TIGR02279 2 LINVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIR-AEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLH 80 (503)
T ss_pred CCCccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC-HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHH
Confidence 56678899997 44454 888888899986 32222 2110000 000 000 001133455666
Q ss_pred HHhhcCCCccEEEEecCChhhH-HHHHHHhhCCCCcEEEEe--cCCCCHH
Q 007482 65 AACAAHPMADVFINFSSFRSAA-ASSMAALKQPTIRVVAII--AEGVPEA 111 (602)
Q Consensus 65 ~i~~~~p~vDlavi~vp~~~~~-~~~~e~~~~~gv~~~vii--s~Gf~E~ 111 (602)
++ . +.|++|-+||....+ ..++.++.+.--+.+|+. ||.++.+
T Consensus 81 ~l-~---~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~ 126 (503)
T TIGR02279 81 AL-A---DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSIT 126 (503)
T ss_pred Hh-C---CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHH
Confidence 64 3 489999999975433 334444443222334443 6677754
No 419
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=27.14 E-value=1.1e+02 Score=31.26 Aligned_cols=16 Identities=25% Similarity=0.573 Sum_probs=12.9
Q ss_pred CCCCEEEEEeCcCccC
Q 007482 243 VNKPVVAWVSGTCARL 258 (602)
Q Consensus 243 ~~KPVv~~k~Gr~~~g 258 (602)
..||||+..-|..-.|
T Consensus 101 ~~kPvIaav~G~a~Gg 116 (262)
T PRK06144 101 LRVPTIAAIAGACVGG 116 (262)
T ss_pred CCCCEEEEECCeeeeh
Confidence 6899999998876543
No 420
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=27.14 E-value=1.7e+02 Score=31.52 Aligned_cols=36 Identities=8% Similarity=-0.086 Sum_probs=24.5
Q ss_pred CccEEEEecCChhhHHHHHHHhhCCCCcEEEEecCCCC
Q 007482 72 MADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVP 109 (602)
Q Consensus 72 ~vDlavi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~ 109 (602)
++|+++.++|... ......++.++|++ +|=.|+-|.
T Consensus 66 ~~Dvvf~a~p~~~-s~~~~~~~~~~g~~-VIDlS~~fR 101 (336)
T PRK08040 66 QAQLAFFVAGREA-SAAYAEEATNAGCL-VIDSSGLFA 101 (336)
T ss_pred CCCEEEECCCHHH-HHHHHHHHHHCCCE-EEECChHhc
Confidence 5899999998864 55666666557775 444565553
No 421
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=27.12 E-value=95 Score=31.51 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=12.8
Q ss_pred CCCCEEEEEeCcCccC
Q 007482 243 VNKPVVAWVSGTCARL 258 (602)
Q Consensus 243 ~~KPVv~~k~Gr~~~g 258 (602)
..||||+.--|..-.|
T Consensus 94 ~~kPvIaav~G~a~Gg 109 (249)
T PRK05870 94 CPLPTIAAVNGAAVGA 109 (249)
T ss_pred CCCCEEEEECCEeEch
Confidence 7899999988876544
No 422
>PRK05865 hypothetical protein; Provisional
Probab=27.06 E-value=4.5e+02 Score=32.08 Aligned_cols=91 Identities=16% Similarity=0.076 Sum_probs=50.4
Q ss_pred cEEEEee--CCcH-HHHHHHhcCCeEEEEEeCCCCC-C-ccccccCceeecccccCCHHHHhhcCCCccEEEEecCChh-
Q 007482 11 TQALFYN--YKQL-PIQRMLDFDFLCVAGIINPGAE-G-FQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRS- 84 (602)
Q Consensus 11 s~avv~g--~~~~-~~~~~~~~g~~~V~gv~~p~~~-~-~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~- 84 (602)
++.|.|| +-|+ +++.|++.|++++.....+... . +... -...+.-..++.++.. ++|.+|.+.....
T Consensus 2 kILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~~~~v~~----v~gDL~D~~~l~~al~---~vD~VVHlAa~~~~ 74 (854)
T PRK05865 2 RIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSWPSSADF----IAADIRDATAVESAMT---GADVVAHCAWVRGR 74 (854)
T ss_pred EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhhcccCceE----EEeeCCCHHHHHHHHh---CCCEEEECCCcccc
Confidence 4566653 2233 7788888999875333211110 0 0000 0112333344555443 4798887754321
Q ss_pred -------hHHHHHHHhhCCCCcEEEEecCCC
Q 007482 85 -------AAASSMAALKQPTIRVVAIIAEGV 108 (602)
Q Consensus 85 -------~~~~~~e~~~~~gv~~~viis~Gf 108 (602)
....++++|.+.|++.+|.+|+..
T Consensus 75 ~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~ 105 (854)
T PRK05865 75 NDHINIDGTANVLKAMAETGTGRIVFTSSGH 105 (854)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCeEEEECCcH
Confidence 133578889888999999888865
No 423
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=26.92 E-value=1.1e+02 Score=36.19 Aligned_cols=94 Identities=18% Similarity=0.155 Sum_probs=63.7
Q ss_pred HHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeE---------------cCCcccccccCcccccccCCcccc
Q 007482 88 SSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVI---------------GPATVGGIQAGAFKIGDTAGTIDN 152 (602)
Q Consensus 88 ~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~rii---------------GPNc~G~~~~~~~~l~~~~~~~~~ 152 (602)
.+.|+.. .|..++++|.+=+.+.+.++|+++|++.||-.+ |+.-+||-|.+...+ ......
T Consensus 125 QI~ea~~-~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf---~vd~~~ 200 (695)
T PRK13802 125 QIWEARA-HGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDL---KVDVNK 200 (695)
T ss_pred HHHHHHH-cCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccc---eeCHHH
Confidence 4555554 899999999988888888999999999998765 888889877653111 011110
Q ss_pred cccccCCCCCcEEEEecChhHHHHHHHHHHhcC
Q 007482 153 IIHCKLYRPGSVGFVSKSGGMSNELYNTIARVT 185 (602)
Q Consensus 153 ~~p~~~~~~G~valvSQSG~l~~~~~~~~~~~g 185 (602)
.....+.-|..+-+||-||--+.+=+..+.+.|
T Consensus 201 t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G 233 (695)
T PRK13802 201 YNELAADLPDDVIKVAESGVFGAVEVEDYARAG 233 (695)
T ss_pred HHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCC
Confidence 100111346789999999987766666666544
No 424
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=26.87 E-value=2.5e+02 Score=30.04 Aligned_cols=86 Identities=19% Similarity=0.187 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHhhcCCCccEEEEEEecCCCc-HHHHHHHHHhcC-CCCCEEEEEeCcCccCccccccccccCCcC----
Q 007482 199 FPGSTLSDHILRFNNIPQVKMMVVLGELGGRD-EYSLVEALKQGK-VNKPVVAWVSGTCARLFKSEVQFGHAGAKS---- 272 (602)
Q Consensus 199 ~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~-~~~f~~~~r~~~-~~KPVv~~k~Gr~~~g~~~~aa~sHtgala---- 272 (602)
+++.+ .++++++.+++ .|.|++-.= |..+ +....++++++. +++|||+. +..+.|...
T Consensus 220 ~pG~~-~~~l~~~~~~~-~~GiVl~~~-G~Gn~p~~~~~~l~~a~~~Gi~VV~~-------------Sq~~~G~v~~~~Y 283 (336)
T TIGR00519 220 YPGIS-PDIIRNYLSKG-YKGIVIEGT-GLGHAPQNKLQELQEASDRGVVVVMT-------------TQCLNGRVNMNVY 283 (336)
T ss_pred cCCCC-HHHHHHHHhCC-CCEEEEeeE-CCCCCCHHHHHHHHHHHHCCCEEEEe-------------CCCCCCccCcccc
Q ss_pred CCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHH
Q 007482 273 GGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETF 308 (602)
Q Consensus 273 g~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~ 308 (602)
+.. ..++++|++...++.---..+|..+
T Consensus 284 ~~g--------~~l~~~G~i~~g~lt~e~A~~kL~~ 311 (336)
T TIGR00519 284 STG--------RRLLQAGVIGGEDMLPEVALVKLMW 311 (336)
T ss_pred cch--------hhHHhCCEEECCCCCHHHHHHHHHH
No 425
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=26.79 E-value=5.9e+02 Score=27.81 Aligned_cols=181 Identities=13% Similarity=0.138 Sum_probs=97.8
Q ss_pred ccEEEEecCChhhHHHHHHH-hhCCCCcEEEEecCCCCHH---HHHHHHHHHH-hCCCeeEcCCcccccccCcccccc-c
Q 007482 73 ADVFINFSSFRSAAASSMAA-LKQPTIRVVAIIAEGVPEA---DTKQLIAYAR-SNNKVVIGPATVGGIQAGAFKIGD-T 146 (602)
Q Consensus 73 vDlavi~vp~~~~~~~~~e~-~~~~gv~~~viis~Gf~E~---~~~~l~~~a~-~~g~riiGPNc~G~~~~~~~~l~~-~ 146 (602)
-|++ +=.. ..+..++++ +.+...+.+.|+++..+|. |.+.+.+.++ +.+++|+--+|-|+......+... +
T Consensus 64 ~d~V--fGg~-~~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~~~~vi~v~t~gf~g~~~~G~~~a~ 140 (410)
T cd01968 64 KDVI--FGGE-KKLYKAILEIIERYHPKAVFVYSTCVVALIGDDIDAVCKTASEKFGIPVIPVHSPGFVGNKNLGNKLAC 140 (410)
T ss_pred ccee--eccH-HHHHHHHHHHHHhCCCCEEEEECCCchhhhccCHHHHHHHHHHhhCCCEEEEECCCcccChhHHHHHHH
Confidence 3554 3333 345554544 4445788999999999998 5566655554 468999999999986532211100 0
Q ss_pred CCccccccccc---CCCCCcEEEEec---ChhHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEE
Q 007482 147 AGTIDNIIHCK---LYRPGSVGFVSK---SGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMM 220 (602)
Q Consensus 147 ~~~~~~~~p~~---~~~~G~valvSQ---SG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I 220 (602)
.+.+....+.. ...++.|-++.. .|.+ .++...+.+.|+.+...++ |+ .++.|+-. =++-+.-
T Consensus 141 ~~l~~~l~~~~~~~~~~~~~VNiig~~~~~~d~-~el~~lL~~~Gl~v~~~~~-~~-----~s~eei~~----~~~A~ln 209 (410)
T cd01968 141 EALLDHVIGTEEPEPLTPYDINLIGEFNVAGEL-WGVKPLLEKLGIRVLASIT-GD-----SRVDEIRR----AHRAKLN 209 (410)
T ss_pred HHHHHHhcCCCCcccCCCCcEEEECCCCCcccH-HHHHHHHHHcCCeEEEEeC-CC-----CCHHHHHh----hhhCcEE
Confidence 01111111110 113688988852 3332 5777778877777655442 22 34555443 3444444
Q ss_pred EEEEecCCCcHHHHHHHHHhcCCCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHHHHHHHcCC
Q 007482 221 VVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGA 291 (602)
Q Consensus 221 ~ly~E~g~~~~~~f~~~~r~~~~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGv 291 (602)
++... ..+..+++.+++ +.+.|.+.. +.-| -.+|++-++++.+-.|.
T Consensus 210 iv~~~---~~~~~~a~~L~~-~fGip~~~~----~p~G----------------~~~t~~~l~~ia~~~g~ 256 (410)
T cd01968 210 VVQCS---KSMIYLARKMEE-KYGIPYIEV----SFYG----------------IRDTSKSLRNIAELLGD 256 (410)
T ss_pred EEEch---hHHHHHHHHHHH-HhCCCeEec----CcCc----------------HHHHHHHHHHHHHHhCC
Confidence 33222 233455666654 357887642 2333 12344777777777775
No 426
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=26.75 E-value=3.2e+02 Score=29.12 Aligned_cols=26 Identities=4% Similarity=-0.141 Sum_probs=18.6
Q ss_pred CccEEEEecCChhhHHHHHHHhhCCCC
Q 007482 72 MADVFINFSSFRSAAASSMAALKQPTI 98 (602)
Q Consensus 72 ~vDlavi~vp~~~~~~~~~e~~~~~gv 98 (602)
++|+++.++|... .....+...++|+
T Consensus 63 ~vDvVf~A~g~g~-s~~~~~~~~~~G~ 88 (334)
T PRK14874 63 GVDIALFSAGGSV-SKKYAPKAAAAGA 88 (334)
T ss_pred CCCEEEECCChHH-HHHHHHHHHhCCC
Confidence 4899999998864 4555666655776
No 427
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=26.69 E-value=93 Score=31.71 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=30.0
Q ss_pred HHHHHHHhhcCCCccEEEEEEecCC-----C--------cHHHHH----HHHHhc-CCCCCEEEEEeCcCcc
Q 007482 204 LSDHILRFNNIPQVKMMVVLGELGG-----R--------DEYSLV----EALKQG-KVNKPVVAWVSGTCAR 257 (602)
Q Consensus 204 ~~d~l~~l~~Dp~t~~I~ly~E~g~-----~--------~~~~f~----~~~r~~-~~~KPVv~~k~Gr~~~ 257 (602)
+.+.++.+.+||++|+|++-.+ |- . +...+. +..++. ...||||+..-|..-.
T Consensus 32 l~~~l~~~~~~~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~G 102 (251)
T TIGR03189 32 LSAALGEHLEDSALRAVLLDAE-GPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLG 102 (251)
T ss_pred HHHHHHHHHcCCCceEEEEECC-CCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCeeee
Confidence 3455666666777777776665 41 0 011222 222333 3689999999886653
No 428
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=26.59 E-value=5.3e+02 Score=25.39 Aligned_cols=83 Identities=10% Similarity=0.060 Sum_probs=49.9
Q ss_pred CHHHHHHHhhcCCCccEEEE-EEec--CCCcHHHHHHHHHhcCCCCCEEEEEeCcCccCccccccccccCCcCCCCcchH
Q 007482 203 TLSDHILRFNNIPQVKMMVV-LGEL--GGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESA 279 (602)
Q Consensus 203 ~~~d~l~~l~~Dp~t~~I~l-y~E~--g~~~~~~f~~~~r~~~~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a 279 (602)
+..++++.+..++ ..++++ ++.+ ...+|-++++.+++....-|||++- +..+.
T Consensus 25 ~~~~~l~~~~~~~-pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt-~~~~~---------------------- 80 (207)
T PRK11475 25 SQSSFQDAMSRIS-FSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIA-DDDIE---------------------- 80 (207)
T ss_pred CHHHHHHHhccCC-CCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEe-CCCCH----------------------
Confidence 3457777765543 245542 2332 2346778888888766677999883 22111
Q ss_pred HHHHHHHHHcCC----cccCCHHHHHHHHHHHHH
Q 007482 280 QAKNQALRDAGA----VVPTSYEAFESAIKETFE 309 (602)
Q Consensus 280 ~~~~a~~~qaGv----i~v~~~~el~~~~~~~~~ 309 (602)
......+.++|+ .-..+++||.++++..+.
T Consensus 81 ~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~ 114 (207)
T PRK11475 81 ARLIGSLSPSPLDGVLSKASTLEILQQELFLSLN 114 (207)
T ss_pred HHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHC
Confidence 334444545554 235688999998887764
No 429
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=26.54 E-value=4.5e+02 Score=26.77 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=69.8
Q ss_pred cEEEEecChhHHHHHHHHHHh-cCCceeEEeeccCCCC-----CCC-CHHHHHHHhhcCCCccEEEEEEecCCCcHHHHH
Q 007482 163 SVGFVSKSGGMSNELYNTIAR-VTDGIYEGIAIGGDVF-----PGS-TLSDHILRFNNIPQVKMMVVLGELGGRDEYSLV 235 (602)
Q Consensus 163 ~valvSQSG~l~~~~~~~~~~-~g~G~s~~vs~Gn~~~-----~dv-~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~ 235 (602)
+|+++.-+|.++..++..+.+ .++-+..++..-.+.. .++ ...|+-+.+ ++++ ++ ++ +..+....
T Consensus 3 kV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll-~~~D--vV---id--~t~p~~~~ 74 (257)
T PRK00048 3 KVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVL-ADAD--VL---ID--FTTPEATL 74 (257)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhc-cCCC--EE---EE--CCCHHHHH
Confidence 588999999999999877765 3566666665443210 011 112332223 3444 43 33 23455555
Q ss_pred HHHHhcC-CCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHhHh
Q 007482 236 EALKQGK-VNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLV 312 (602)
Q Consensus 236 ~~~r~~~-~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~~~~~ 312 (602)
+.++.+. .+||||+--.|-++. +.....++. ++.+++...++.==+.+...+..+..
T Consensus 75 ~~~~~al~~G~~vvigttG~s~~-------------------~~~~l~~aa-~~~~v~~s~n~s~g~~~~~~l~~~aa 132 (257)
T PRK00048 75 ENLEFALEHGKPLVIGTTGFTEE-------------------QLAELEEAA-KKIPVVIAPNFSIGVNLLMKLAEKAA 132 (257)
T ss_pred HHHHHHHHcCCCEEEECCCCCHH-------------------HHHHHHHHh-cCCCEEEECcchHHHHHHHHHHHHHH
Confidence 5555543 799999543332321 112444444 88999999988776666666665544
No 430
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=26.47 E-value=1.1e+02 Score=31.32 Aligned_cols=16 Identities=44% Similarity=0.559 Sum_probs=13.0
Q ss_pred CCCCEEEEEeCcCccC
Q 007482 243 VNKPVVAWVSGTCARL 258 (602)
Q Consensus 243 ~~KPVv~~k~Gr~~~g 258 (602)
..||||+..-|.+-.|
T Consensus 97 ~~kpvIAav~G~a~Gg 112 (260)
T PRK07511 97 FPKPVIAAVEGAAAGA 112 (260)
T ss_pred CCCCEEEEECCeeehH
Confidence 6899999998876554
No 431
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=26.19 E-value=2.4e+02 Score=27.86 Aligned_cols=24 Identities=4% Similarity=-0.100 Sum_probs=15.5
Q ss_pred cEEEEeeCCc--H-HHHHHHhcCCeEE
Q 007482 11 TQALFYNYKQ--L-PIQRMLDFDFLCV 34 (602)
Q Consensus 11 s~avv~g~~~--~-~~~~~~~~g~~~V 34 (602)
++.|+||.++ + +.+.+.+.|++++
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~ 28 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVI 28 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEE
Confidence 4556654332 2 7888888999864
No 432
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=26.04 E-value=3.4e+02 Score=30.04 Aligned_cols=96 Identities=14% Similarity=0.149 Sum_probs=0.0
Q ss_pred CCCCcEEEEeeCCcH---HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCCh
Q 007482 7 FSKTTQALFYNYKQL---PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFR 83 (602)
Q Consensus 7 ~~p~s~avv~g~~~~---~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~ 83 (602)
..++-+++|-|.++| ++..+.+.++...--+. |+.++ +... .-..-+.+...
T Consensus 1 ~~~~~kvLviG~g~rehal~~~~~~~~~~~~~~~~-pgn~g------------------~~~~------~~~~~~~~~~~ 55 (426)
T PRK13789 1 MQVKLKVLLIGSGGRESAIAFALRKSNLLSELKVF-PGNGG------------------FPDD------ELLPADSFSIL 55 (426)
T ss_pred CCCCcEEEEECCCHHHHHHHHHHHhCCCCCEEEEE-CCchH------------------Hhcc------ccccccCcCcC
Q ss_pred hhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCC
Q 007482 84 SAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPA 131 (602)
Q Consensus 84 ~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPN 131 (602)
. .+++++.|.+.++..+++ |.-.-+.+.+.+.+++.|+.++||+
T Consensus 56 d-~~~l~~~a~~~~iD~Vv~---g~E~~l~~glad~~~~~Gip~~Gp~ 99 (426)
T PRK13789 56 D-KSSVQSFLKSNPFDLIVV---GPEDPLVAGFADWAAELGIPCFGPD 99 (426)
T ss_pred C-HHHHHHHHHHcCCCEEEE---CCchHHHHHHHHHHHHcCCCcCCCH
No 433
>PRK09265 aminotransferase AlaT; Validated
Probab=26.01 E-value=5.3e+02 Score=27.76 Aligned_cols=43 Identities=16% Similarity=0.352 Sum_probs=28.8
Q ss_pred HHHhhCCCCcEEEEecC----C--CCHHHHHHHHHHHHhCCCeeEcCCc
Q 007482 90 MAALKQPTIRVVAIIAE----G--VPEADTKQLIAYARSNNKVVIGPAT 132 (602)
Q Consensus 90 ~e~~~~~gv~~~viis~----G--f~E~~~~~l~~~a~~~g~riiGPNc 132 (602)
++.+...+.+.+++.+. | ++.+..++|.++|+++|+.|+==++
T Consensus 161 l~~~~~~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~ 209 (404)
T PRK09265 161 IRSKITPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEI 209 (404)
T ss_pred HHHhccccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehh
Confidence 44443467777666653 4 4555788999999999988764333
No 434
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=25.91 E-value=2e+02 Score=29.29 Aligned_cols=45 Identities=18% Similarity=0.096 Sum_probs=27.0
Q ss_pred CCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHHHHHHHcCCc
Q 007482 243 VNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAV 292 (602)
Q Consensus 243 ~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi 292 (602)
..||||+..-|..-.| +-..+..+-=.++..+ ..|---.-+.|++
T Consensus 100 ~~kPvIaav~G~a~Gg-G~~lalacD~ria~~~----a~f~~pe~~~Gl~ 144 (260)
T PRK07827 100 LPKPVIAAIDGHVRAG-GFGLVGACDIVVAGPE----STFALTEARIGVA 144 (260)
T ss_pred CCCCEEEEEcCeeecc-hhhHHHhCCEEEEcCC----CEEeCcccccCCC
Confidence 6899999999977544 2444444444444444 3344445566765
No 435
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=25.80 E-value=2.3e+02 Score=30.75 Aligned_cols=73 Identities=11% Similarity=0.132 Sum_probs=42.6
Q ss_pred ccccCCHHHHhhcCCCccEEEEecCCh----hhHHHHHHHhhCCCCcEEEEec----CC--CCHHHHHHHHHHHHhCCCe
Q 007482 57 IPVHSTVEAACAAHPMADVFINFSSFR----SAAASSMAALKQPTIRVVAIIA----EG--VPEADTKQLIAYARSNNKV 126 (602)
Q Consensus 57 ~~~y~sv~~i~~~~p~vDlavi~vp~~----~~~~~~~e~~~~~gv~~~viis----~G--f~E~~~~~l~~~a~~~g~r 126 (602)
-|+|+....+.... .+++..+.+... ..+++ ++++...+++.+++.+ +| ++....++|+++|+++|+.
T Consensus 135 ~P~y~~~~~~~~~~-g~~~~~i~~~~~~~~~~d~~~-l~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ 212 (412)
T PTZ00433 135 APGFPHYETVCKAY-GIEMRFYNCRPEKDWEADLDE-IRRLVDDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLP 212 (412)
T ss_pred cCCcccHHHHHHHc-CCEEEEEecCccccCcCCHHH-HHHHhccCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCe
Confidence 36666666554433 256555544321 12344 4444445788776644 24 3555788999999999987
Q ss_pred eEcCC
Q 007482 127 VIGPA 131 (602)
Q Consensus 127 iiGPN 131 (602)
|+==+
T Consensus 213 ii~De 217 (412)
T PTZ00433 213 LISDE 217 (412)
T ss_pred EEEec
Confidence 76333
No 436
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=25.78 E-value=2.3e+02 Score=28.99 Aligned_cols=46 Identities=17% Similarity=0.108 Sum_probs=26.0
Q ss_pred CCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHHHHHHHcCCcc
Q 007482 243 VNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVV 293 (602)
Q Consensus 243 ~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~ 293 (602)
..||||+.--|.+-.| +-.-+..+-=.++.++ ..|.--.-+.|++.
T Consensus 95 ~~kPvIaav~G~a~Gg-G~~lalacD~~ia~~~----a~f~~pe~~~Gl~~ 140 (261)
T PRK11423 95 FPKPVIAMVEGSVWGG-AFELIMSCDLIIAAST----STFAMTPANLGVPY 140 (261)
T ss_pred CCCCEEEEEecEEech-HHHHHHhCCEEEecCC----CEecCchhhcCCCC
Confidence 7899999988876544 2344444444444444 23333334667653
No 437
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=25.71 E-value=1.1e+02 Score=30.97 Aligned_cols=16 Identities=44% Similarity=0.619 Sum_probs=13.1
Q ss_pred CCCCEEEEEeCcCccC
Q 007482 243 VNKPVVAWVSGTCARL 258 (602)
Q Consensus 243 ~~KPVv~~k~Gr~~~g 258 (602)
..||||+..-|..-.|
T Consensus 95 ~~kp~Iaav~G~a~Gg 110 (259)
T PRK06688 95 LPKPVVAAVNGPAVGV 110 (259)
T ss_pred CCCCEEEEECCeeecH
Confidence 6899999998877654
No 438
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=25.68 E-value=1.5e+02 Score=31.07 Aligned_cols=77 Identities=12% Similarity=0.132 Sum_probs=51.9
Q ss_pred eccccc--CCHHHHhhcCCCccEEEEecCChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHh-CCCeeEc--
Q 007482 55 IAIPVH--STVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARS-NNKVVIG-- 129 (602)
Q Consensus 55 ~G~~~y--~sv~~i~~~~p~vDlavi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~-~g~riiG-- 129 (602)
.|+.+. .+++++++ =+.+ .++++.+.+++.+.+.++|++ ++=-|.-|=...+..+.+++++ +.+-|+|
T Consensus 53 ~Gv~~v~~~~~~~v~~----~~~V--iirAHGv~~~~~~~~~~~g~~-viDaTCP~V~k~~~~v~~~~~~Gy~iviiG~~ 125 (281)
T PRK12360 53 KGVKTIEESEIDSLKE----GDVV--IIRSHGVSKKVYKDLKDKGLE-IIDATCPFVKKIQNIVEEYYNKGYSIIIVGDK 125 (281)
T ss_pred CcCEEECcCchhhCCC----CCEE--EEeCCCCCHHHHHHHHHCCCe-EEeCCCccchHHHHHHHHHHhCCCEEEEEcCC
Confidence 578888 78887642 1444 356777789999999999987 3333444544467777777776 3477889
Q ss_pred --CCccccccc
Q 007482 130 --PATVGGIQA 138 (602)
Q Consensus 130 --PNc~G~~~~ 138 (602)
|...|+...
T Consensus 126 ~HpEv~gi~g~ 136 (281)
T PRK12360 126 NHPEVIGINGW 136 (281)
T ss_pred CCceeeEeccC
Confidence 777777654
No 439
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=25.68 E-value=1.4e+02 Score=30.40 Aligned_cols=53 Identities=19% Similarity=0.381 Sum_probs=29.6
Q ss_pred HHHHHHhhcCCCccEEEEEEecCCC---c--------------HHHHH----HHHHhc-CCCCCEEEEEeCcCccC
Q 007482 205 SDHILRFNNIPQVKMMVVLGELGGR---D--------------EYSLV----EALKQG-KVNKPVVAWVSGTCARL 258 (602)
Q Consensus 205 ~d~l~~l~~Dp~t~~I~ly~E~g~~---~--------------~~~f~----~~~r~~-~~~KPVv~~k~Gr~~~g 258 (602)
.+.++.+.+||++|+|++..+ |-+ . .+.|. +..++. ...||||+..-|..-.|
T Consensus 40 ~~~l~~~~~d~~vr~vVltg~-g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 114 (256)
T PRK06143 40 TQALRWLAADPDVRVLVLRGA-GEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGG 114 (256)
T ss_pred HHHHHHHhcCCCcEEEEEEeC-CCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeeh
Confidence 345555666666676666666 411 0 11122 222332 36899999988866543
No 440
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=25.63 E-value=3.4e+02 Score=28.88 Aligned_cols=101 Identities=14% Similarity=0.011 Sum_probs=54.8
Q ss_pred HHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHh-CCCeeEcCCcccccccCcccccccCCcccccccccCCCCCc-
Q 007482 86 AASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARS-NNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGS- 163 (602)
Q Consensus 86 ~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~-~g~riiGPNc~G~~~~~~~~l~~~~~~~~~~~p~~~~~~G~- 163 (602)
+..+++.+.+++++.+.++..|-+-..-.....+..+ .++.+. ++.+..... .......++.
T Consensus 32 l~~~~~~l~~~~~~~I~~~g~GsS~~aa~~~~~~~~k~~~i~v~------~~~~~~~~~----------~~~~~~~~~~l 95 (340)
T PRK11382 32 VHAIVEEMVKRDIDRIYFVACGSPLNAAQTAKHLADRFSDLQVY------AISGWEFCD----------NTPYRLDDRCA 95 (340)
T ss_pred HHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHHcCCCeE------EeccHHHHh----------cCCcCCCCCCE
Confidence 5667778877789999999999776533333322222 222211 111211000 0011124555
Q ss_pred EEEEecChhHH--HHHHHHHHhcCCceeEEeeccCCCCCCCCHHHH
Q 007482 164 VGFVSKSGGMS--NELYNTIARVTDGIYEGIAIGGDVFPGSTLSDH 207 (602)
Q Consensus 164 valvSQSG~l~--~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~ 207 (602)
|=.|||||.-. ...+.+++++| ..+|++=|.. +..+..+
T Consensus 96 vI~iS~SGeT~e~i~al~~ak~~G---a~~I~IT~~~--~S~L~~~ 136 (340)
T PRK11382 96 VIGVSDYGKTEEVIKALELGRACG---ALTAAFTKRA--DSPITSA 136 (340)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHcC---CeEEEEECCC--CChHHHh
Confidence 55689999654 34567777776 3666666655 5555443
No 441
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=25.59 E-value=1.9e+02 Score=32.87 Aligned_cols=126 Identities=15% Similarity=0.242 Sum_probs=71.0
Q ss_pred cCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHhcC--CCCCEEEEEeCcCccCccc
Q 007482 184 VTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGK--VNKPVVAWVSGTCARLFKS 261 (602)
Q Consensus 184 ~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~--~~KPVv~~k~Gr~~~g~~~ 261 (602)
...+|..+|+.-... -...+.+..++.. ..-|++++| .+..-+.|++++...+ ..+|.+.+-+...+...-.
T Consensus 199 ~~~~f~~~ig~s~~~---~~~~~~~~~~A~~--~~pvlI~GE-~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e 272 (520)
T PRK10820 199 DDSAFSQIVAVSPKM---RQVVEQARKLAML--DAPLLITGD-TGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVE 272 (520)
T ss_pred ccccccceeECCHHH---HHHHHHHHHHhCC--CCCEEEECC-CCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHH
Confidence 456777776543221 1133333333332 334899999 6666678888887655 4579888765544321000
Q ss_pred ccccccc-CCcCCCCcchHHHHHHHHHHc--CCcccCCHHHHHHHHHHHHHhHhhcCCCCC
Q 007482 262 EVQFGHA-GAKSGGEMESAQAKNQALRDA--GAVVPTSYEAFESAIKETFEKLVEEGKIPP 319 (602)
Q Consensus 262 ~aa~sHt-galag~~~~~a~~~~a~~~qa--Gvi~v~~~~el~~~~~~~~~~~~~~g~~~~ 319 (602)
..-++|. |+..+.. ......|+++ |.+..+++++|-.-.+.-+-+....|.+..
T Consensus 273 ~elFG~~~~~~~~~~----~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~ 329 (520)
T PRK10820 273 SELFGHAPGAYPNAL----EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRR 329 (520)
T ss_pred HHhcCCCCCCcCCcc----cCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCccc
Confidence 1113332 2222222 2223556554 999999999998877766666666665433
No 442
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=25.53 E-value=1.1e+03 Score=27.51 Aligned_cols=224 Identities=11% Similarity=0.076 Sum_probs=121.1
Q ss_pred eecccccCCHHHHhhcCCCccEEEEecCChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHh-CCCeeEc---
Q 007482 54 EIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARS-NNKVVIG--- 129 (602)
Q Consensus 54 v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~-~g~riiG--- 129 (602)
-.|+.+..+++++++ -+.+ .++++.+.+++.+.+.++|++- +=-|.-|=...++.+.+++++ +-+-++|
T Consensus 51 ~~Gv~~v~~~~~~~~----~~~v--ii~aHG~~~~~~~~~~~~~~~v-iDaTCP~V~k~~~~~~~~~~~g~~ivi~G~~~ 123 (647)
T PRK00087 51 KKGIKPIEDIDELNE----GDTI--IIRSHGVPPEVLEELKDKGLKV-IDATCPFVKNIQKLAKKYYEEGYQIVIVGDKN 123 (647)
T ss_pred HCCCEEeCCHhhCCC----CCEE--EEeCCCCCHHHHHHHHHCCCeE-EECCCcCchHHHHHHHHHHhCCCEEEEEeCCC
Confidence 368888888888642 1444 3567777899999999988873 222444444467777777766 3467889
Q ss_pred -CCcccccccCcccccccCCcccccccccCCCCCcEEEEecChhH---HHHHHHHHHhcCCceeEEeeccCCC-CCCCCH
Q 007482 130 -PATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGM---SNELYNTIARVTDGIYEGIAIGGDV-FPGSTL 204 (602)
Q Consensus 130 -PNc~G~~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQSG~l---~~~~~~~~~~~g~G~s~~vs~Gn~~-~~dv~~ 204 (602)
|...|+........ .+..+... .. ....+.+++++||.--- ...+.+.+.++.-.+.. =|.. +.-.+=
T Consensus 124 HpEv~g~~g~~~~~~-~vv~~~~~-~~-~~~~~~~~~~~~QTT~~~~~~~~~~~~l~~~~~~~~~----~~tiC~at~~R 196 (647)
T PRK00087 124 HPEVIGINGWCNNSA-IIVEDGEE-AE-KLPFDKKICVVSQTTEKQENFEKVLKELKKKGKEVKV----FNTICNATEVR 196 (647)
T ss_pred CCeeeeeccccCCCE-EEECCHHH-Hh-hCCCCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCccc----CCCcchhhhhH
Confidence 66677765432010 00001100 01 11135789999986543 34466666655433311 1221 101222
Q ss_pred HHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHhcC-----------------CCCCEEEEEeCcCccCccccccccc
Q 007482 205 SDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGK-----------------VNKPVVAWVSGTCARLFKSEVQFGH 267 (602)
Q Consensus 205 ~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~-----------------~~KPVv~~k~Gr~~~g~~~~aa~sH 267 (602)
-+.+.-|. .++.++++.+=..-.|.+++.+.+++.. .++..|.+-+|.|.+-
T Consensus 197 q~a~~~la--~~~d~~~vvGg~~SsNt~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~vgitagaStP~--------- 265 (647)
T PRK00087 197 QEAAEKLA--KKVDVMIVVGGKNSSNTTKLYEICKSNCTNTIHIENAGELPEEWFKGVKIIGVTAGASTPD--------- 265 (647)
T ss_pred HHHHHHHH--hhCCEEEEECCCCCccHHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEeccCCCH---------
Confidence 23344444 3567776665434467889999988631 1234455555544432
Q ss_pred cCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHhH
Q 007482 268 AGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKL 311 (602)
Q Consensus 268 tgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~~~~ 311 (602)
. =-.++.+ .+++.|=+.-.+.+|++........++
T Consensus 266 -------~-~i~~v~~-~l~~~~~~~~~~~~~~~~~~~~~~~~l 300 (647)
T PRK00087 266 -------W-IIEEVIK-KMSELDNMEEVEENEQLEYMNELEKQI 300 (647)
T ss_pred -------H-HHHHHHH-HHHHhccccccCHHHHHHHHHHHHhhc
Confidence 0 0113333 345555555567788776655545443
No 443
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=25.51 E-value=5.5e+02 Score=26.29 Aligned_cols=112 Identities=16% Similarity=0.129 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHhCCCeeEcCCcccccccCcccccccCCcccccccccCCCCCcEEEEec--ChhHHH----HHHHH
Q 007482 107 GVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSK--SGGMSN----ELYNT 180 (602)
Q Consensus 107 Gf~E~~~~~l~~~a~~~g~riiGPNc~G~~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQ--SG~l~~----~~~~~ 180 (602)
+++++..+++.+.|++.|=+ ||...- .+ . .-+.+.|+++.. +..+.. .+-+.
T Consensus 27 ~vs~~tr~rV~~~a~~lgY~---pn~~a~------~l-----------~--~~~~~~Igvv~~~~~~~f~~~l~~~i~~~ 84 (329)
T TIGR01481 27 NVKPATRKKVLEVIKRLDYR---PNAVAR------GL-----------A--SKRTTTVGVIIPDISNIYYAELARGIEDI 84 (329)
T ss_pred CCCHHHHHHHHHHHHHHCCC---CCHHHH------HH-----------h--hCCCCEEEEEeCCCCchhHHHHHHHHHHH
Confidence 67888999999999998753 443110 01 0 002234555543 222333 33445
Q ss_pred HHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHhcCCCCCEEEE
Q 007482 181 IARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAW 250 (602)
Q Consensus 181 ~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~~~KPVv~~ 250 (602)
+.++|..+ .+...+.. .-...++++.+.+ .++..|++... ... ....+.+++ .++|||.+
T Consensus 85 ~~~~g~~~--~i~~~~~~--~~~~~~~~~~l~~-~~vdGiIi~~~-~~~--~~~~~~l~~--~~iPvV~~ 144 (329)
T TIGR01481 85 ATMYKYNI--ILSNSDED--PEKEVQVLNTLLS-KQVDGIIFMGG-TIT--EKLREEFSR--SPVPVVLA 144 (329)
T ss_pred HHHcCCEE--EEEeCCCC--HHHHHHHHHHHHh-CCCCEEEEeCC-CCC--hHHHHHHHh--cCCCEEEE
Confidence 55555444 44333222 2234566666654 56888887543 222 234444443 57899987
No 444
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=25.45 E-value=2e+02 Score=32.02 Aligned_cols=121 Identities=12% Similarity=0.029 Sum_probs=63.3
Q ss_pred CCcEEEEeeCCcH---HHHHHHhcCCeEEEEEeCCCCC--C--ccccccCceeecccccCCHHHHhhcCCCccEEEEecC
Q 007482 9 KTTQALFYNYKQL---PIQRMLDFDFLCVAGIINPGAE--G--FQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSS 81 (602)
Q Consensus 9 p~s~avv~g~~~~---~~~~~~~~g~~~V~gv~~p~~~--~--~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp 81 (602)
-.+|.|| |.++- +++||+..|..-+.-++ +..- . ...+|...+-.|.+--..+.+.+.+. .+|+-+-++.
T Consensus 20 ~s~Vlli-G~gglGsEilKNLvL~GIg~~tIvD-~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eL-Np~V~i~~~~ 96 (425)
T cd01493 20 SAHVCLL-NATATGTEILKNLVLPGIGSFTIVD-GSKVDEEDLGNNFFLDASSLGKSRAEATCELLQEL-NPDVNGSAVE 96 (425)
T ss_pred hCeEEEE-cCcHHHHHHHHHHHHcCCCeEEEEC-CCcCchhhccccccCChhhcCcHHHHHHHHHHHHH-CCCCEEEEEe
Confidence 3455666 44433 99999998876444454 3110 0 01234433444544322333333321 2355544443
Q ss_pred ChhhHHHHH---HHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCcccccc
Q 007482 82 FRSAAASSM---AALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQ 137 (602)
Q Consensus 82 ~~~~~~~~~---e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc~G~~~ 137 (602)
.. +...+ .+.- .+.. +|| ++..++....+|.++|+++++.++=.+|.|++-
T Consensus 97 e~--~~~ll~~~~~f~-~~fd-iVI-~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G 150 (425)
T cd01493 97 ES--PEALLDNDPSFF-SQFT-VVI-ATNLPESTLLRLADVLWSANIPLLYVRSYGLYG 150 (425)
T ss_pred cc--cchhhhhHHHHh-cCCC-EEE-ECCCCHHHHHHHHHHHHHcCCCEEEEecccCEE
Confidence 31 22211 1222 2333 333 455566666678999999999999888888763
No 445
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=25.27 E-value=1.3e+02 Score=26.78 Aligned_cols=71 Identities=13% Similarity=0.268 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCC--cHHHHHHHHHhcCCCCCEEE
Q 007482 172 GMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGR--DEYSLVEALKQGKVNKPVVA 249 (602)
Q Consensus 172 ~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~--~~~~f~~~~r~~~~~KPVv~ 249 (602)
+-...+...+.++|..+- . -.+..|.+.++.++++..+|++..+ +-. ...++++.+|+...+.||.+
T Consensus 4 a~~~~l~~~L~~~~~~vv---~-------~~~~dd~~~~i~~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~~~iPVFl 72 (115)
T PF03709_consen 4 AASRELAEALEQRGREVV---D-------ADSTDDALAIIESFTDIAAVVISWD-GEEEDEAQELLDKIRERNFGIPVFL 72 (115)
T ss_dssp HHHHHHHHHHHHTTTEEE---E-------ESSHHHHHHHHHCTTTEEEEEEECH-HHHHHHHHHHHHHHHHHSTT-EEEE
T ss_pred HHHHHHHHHHHHCCCEEE---E-------eCChHHHHHHHHhCCCeeEEEEEcc-cccchhHHHHHHHHHHhCCCCCEEE
Confidence 344556666665555432 2 3456799999999999999999987 221 24578889988778999999
Q ss_pred EEeC
Q 007482 250 WVSG 253 (602)
Q Consensus 250 ~k~G 253 (602)
+.--
T Consensus 73 ~~~~ 76 (115)
T PF03709_consen 73 LAER 76 (115)
T ss_dssp EESC
T ss_pred EecC
Confidence 9753
No 446
>PRK06392 homoserine dehydrogenase; Provisional
Probab=25.23 E-value=2.9e+02 Score=29.57 Aligned_cols=63 Identities=10% Similarity=0.143 Sum_probs=37.1
Q ss_pred CHHHHhhcCCCccEEEEecCChhh---HHHHHHHhhCCCCcEEEEecCC-CCHHHHHHHHHHHHhCCCeeE
Q 007482 62 TVEAACAAHPMADVFINFSSFRSA---AASSMAALKQPTIRVVAIIAEG-VPEADTKQLIAYARSNNKVVI 128 (602)
Q Consensus 62 sv~~i~~~~p~vDlavi~vp~~~~---~~~~~e~~~~~gv~~~viis~G-f~E~~~~~l~~~a~~~g~rii 128 (602)
+..++.. +++|++|=++|.... .-...+++-++|+.. |..+=| ++ ..-++|.+.|+++|.++.
T Consensus 73 ~~~~ll~--~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hV-VTaNKgalA-~~~~eL~~lA~~~g~~~~ 139 (326)
T PRK06392 73 KFDEIFE--IKPDVIVDVTPASKDGIREKNLYINAFEHGIDV-VTANKSGLA-NHWHDIMDSASKNRRIIR 139 (326)
T ss_pred CHHHHhc--CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEE-EcCCHHHHH-hhHHHHHHHHHHcCCeEE
Confidence 5666644 258999999863211 122334444477762 222211 22 256889999999998765
No 447
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=25.17 E-value=1e+02 Score=31.37 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=30.1
Q ss_pred HHHHHHhhcCCCccEEEEEEecCC-----Cc-------------HHHHHHHHHhcC-CCCCEEEEEeCcCccC
Q 007482 205 SDHILRFNNIPQVKMMVVLGELGG-----RD-------------EYSLVEALKQGK-VNKPVVAWVSGTCARL 258 (602)
Q Consensus 205 ~d~l~~l~~Dp~t~~I~ly~E~g~-----~~-------------~~~f~~~~r~~~-~~KPVv~~k~Gr~~~g 258 (602)
.+.++.+.+||++|+|++..+ |- .| ...|.+..++.. ..||||+.--|..-.|
T Consensus 37 ~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~Gg 108 (257)
T PRK05862 37 GAALAAFDADEGIGAIVITGS-EKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYALGG 108 (257)
T ss_pred HHHHHHHhhCCCeeEEEEECC-CCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEeHH
Confidence 345555556666666666665 41 00 012333333333 6899999998876544
No 448
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=25.16 E-value=5.2e+02 Score=28.94 Aligned_cols=153 Identities=15% Similarity=0.160 Sum_probs=85.6
Q ss_pred hhHHHHHHHhhCC--CCcEEEEecCCCCHH---HHHHHHHHHHhC---------CCeeEcCCcccccccCcccccccCCc
Q 007482 84 SAAASSMAALKQP--TIRVVAIIAEGVPEA---DTKQLIAYARSN---------NKVVIGPATVGGIQAGAFKIGDTAGT 149 (602)
Q Consensus 84 ~~~~~~~e~~~~~--gv~~~viis~Gf~E~---~~~~l~~~a~~~---------g~riiGPNc~G~~~~~~~~l~~~~~~ 149 (602)
..+..+++.+.++ ..+.+.|+|++.+|. |.+.+++.+++. ++.|+.=||.|+-.....+. ...
T Consensus 78 ~~L~~ai~~~~~~~~~p~~i~v~ttc~~eiiGDDi~~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~gs~~~Gy---~~a 154 (461)
T TIGR02931 78 DRVEEAVDVLLTRYPDVKVVPIITTCSTEIIGDDVDGLISKLNEELLKEKFPDREVHLIPIHTPSFVGSMITGY---DVA 154 (461)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCchHHhhhcCHHHHHHHHHhhhcccccCCCCCeEEEeeCCCCCCcHHHHH---HHH
Confidence 3455556555433 367888999999998 566666555432 57888888888865332111 111
Q ss_pred cccc---ccccCCCCCcEEEEe--cChhHHHHHHHHHHhcCCceeEEeecc---C----------CCCCCCCHHHHHHHh
Q 007482 150 IDNI---IHCKLYRPGSVGFVS--KSGGMSNELYNTIARVTDGIYEGIAIG---G----------DVFPGSTLSDHILRF 211 (602)
Q Consensus 150 ~~~~---~p~~~~~~G~valvS--QSG~l~~~~~~~~~~~g~G~s~~vs~G---n----------~~~~dv~~~d~l~~l 211 (602)
+... +.....+++.|-++. .+.+=..++-..+...|+-+..+.... + .. +.++.|+
T Consensus 155 ~~ali~~~~~~~~~~~~VNlig~~~~~~D~~elk~lL~~~Gl~v~~l~d~~s~d~~~~~~~~~~~~g--g~tleei---- 228 (461)
T TIGR02931 155 VHDFVKHFAKKDKPNDKINLITGWVNPGDVKELKHLLEEMDIEANVLFEIESFDSPLMPDKSAVSHG--STTIEDL---- 228 (461)
T ss_pred HHHHHHHHccCCCCCCcEEEECCCCChhhHHHHHHHHHHcCCceEEeeccccccCCCCCcccccCCC--CCcHHHH----
Confidence 1111 111122468899997 343444677778887788776543221 0 01 3345554
Q ss_pred hcCCCccEEEEEEecCCCcHHHHHHHHHhcCCCCCEEE
Q 007482 212 NNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVA 249 (602)
Q Consensus 212 ~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~~~KPVv~ 249 (602)
.+=++-+.-++... ..+...++.+++ +.+.|-+.
T Consensus 229 ~~~~~A~lniv~~~---~~g~~~A~~Lee-~~giP~~~ 262 (461)
T TIGR02931 229 TDTANAKGTIALNR---YEGMKAADYLQK-KFDVPAII 262 (461)
T ss_pred HhhccCcEEEEEcH---hhHHHHHHHHHH-HhCCCeec
Confidence 44455554444332 345666676665 35778664
No 449
>PLN02214 cinnamoyl-CoA reductase
Probab=25.12 E-value=5.2e+02 Score=27.23 Aligned_cols=24 Identities=4% Similarity=0.018 Sum_probs=15.5
Q ss_pred cEEEEeeCCcH----HHHHHHhcCCeEE
Q 007482 11 TQALFYNYKQL----PIQRMLDFDFLCV 34 (602)
Q Consensus 11 s~avv~g~~~~----~~~~~~~~g~~~V 34 (602)
..++|.|.+|. +++.|++.|+.++
T Consensus 11 ~~vlVTGatGfIG~~l~~~L~~~G~~V~ 38 (342)
T PLN02214 11 KTVCVTGAGGYIASWIVKILLERGYTVK 38 (342)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEE
Confidence 33445454443 7788888999864
No 450
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=25.02 E-value=2.1e+02 Score=29.13 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=30.2
Q ss_pred CCCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHHHHHHHcCCcc
Q 007482 242 KVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVV 293 (602)
Q Consensus 242 ~~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~ 293 (602)
...||||+..-|..-.| +-.-+..+-=.++.++ ..|..-.-+.|++.
T Consensus 98 ~~~kpvIaav~G~a~Gg-G~~lalacD~ria~~~----a~f~~pe~~~Gl~p 144 (263)
T PRK07799 98 RLTKPLIAAVEGPAIAG-GTEILQGTDIRVAGES----AKFGISEAKWSLFP 144 (263)
T ss_pred cCCCCEEEEECCeEecc-HHHHHHhCCEEEecCC----CEecCcccccCcCC
Confidence 36899999999977654 2455555555555555 44545556677754
No 451
>PRK09526 lacI lac repressor; Reviewed
Probab=24.98 E-value=7.7e+02 Score=25.37 Aligned_cols=114 Identities=9% Similarity=0.079 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHhCCCeeEcCCcccccccCcccccccCCcccccccccCCCCCcEEEEecC------hhHHHHHHHH
Q 007482 107 GVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKS------GGMSNELYNT 180 (602)
Q Consensus 107 Gf~E~~~~~l~~~a~~~g~riiGPNc~G~~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQS------G~l~~~~~~~ 180 (602)
+++|+..+++.+.|++.|-+ ||...- .+ . .-+.+.||++..+ ..+...+-..
T Consensus 31 ~vs~~tr~rV~~~a~elgY~---pn~~a~------~l-----------~--~~~~~~Igvv~~~~~~~~~~~~~~gi~~~ 88 (342)
T PRK09526 31 HVSAKTREKVEAAMAELNYV---PNRVAQ------QL-----------A--GKQSLTIGLATTSLALHAPSQIAAAIKSR 88 (342)
T ss_pred CCCHHHHHHHHHHHHHHCCC---cCHHHH------Hh-----------h--cCCCceEEEEeCCCCcccHHHHHHHHHHH
Confidence 57899999999999998753 553211 00 0 0012334444321 2344455566
Q ss_pred HHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHhcCCCCCEEEE
Q 007482 181 IARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAW 250 (602)
Q Consensus 181 ~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~~~KPVv~~ 250 (602)
+.+.|.-+-.+ .+.+.. .-...++++.+.+ ..+..|++... . +.........+ ..+.|||.+
T Consensus 89 a~~~g~~~~i~-~~~~~~--~~~~~~~l~~l~~-~~vdGiii~~~--~-~~~~~~~~~~~-~~~iPvV~~ 150 (342)
T PRK09526 89 ADQLGYSVVIS-MVERSG--VEACQAAVNELLA-QRVSGVIINVP--L-EDADAEKIVAD-CADVPCLFL 150 (342)
T ss_pred HHHCCCEEEEE-eCCCCh--HHHHHHHHHHHHh-cCCCEEEEecC--C-CcchHHHHHhh-cCCCCEEEE
Confidence 66655444332 233221 1234577777654 67888887533 1 22222222222 247899987
No 452
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=24.89 E-value=1.5e+02 Score=26.37 Aligned_cols=96 Identities=18% Similarity=0.208 Sum_probs=48.7
Q ss_pred cEEEEecCChhhHHHHHHHhhCCCCcEEEEecC-CC-CHH-HHHHHHHHHHhCCCe-eEcCCcccccccCcccccccCCc
Q 007482 74 DVFINFSSFRSAAASSMAALKQPTIRVVAIIAE-GV-PEA-DTKQLIAYARSNNKV-VIGPATVGGIQAGAFKIGDTAGT 149 (602)
Q Consensus 74 Dlavi~vp~~~~~~~~~e~~~~~gv~~~viis~-Gf-~E~-~~~~l~~~a~~~g~r-iiGPNc~G~~~~~~~~l~~~~~~ 149 (602)
++++-.-| .+.-++.+.+.|+|.||..-. |= ++. ..+++.+.|++.|+. +-=|=..+-+++.. + ..
T Consensus 8 ~~~vs~Q~----~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~--v----~~ 77 (110)
T PF04273_consen 8 DLSVSGQP----SPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEED--V----EA 77 (110)
T ss_dssp TEEEECS------HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHH--H----HH
T ss_pred CeEECCCC----CHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHH--H----HH
Confidence 56654322 234466677799999999842 11 111 456688899999987 33343333333332 1 12
Q ss_pred ccccccccCCCCCcEEEEecChhHHHHHHHHHH
Q 007482 150 IDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIA 182 (602)
Q Consensus 150 ~~~~~p~~~~~~G~valvSQSG~l~~~~~~~~~ 182 (602)
|...+. -.||+|=+-.+||.=+..+....+
T Consensus 78 f~~~l~---~~~~Pvl~hC~sG~Ra~~l~~l~~ 107 (110)
T PF04273_consen 78 FADALE---SLPKPVLAHCRSGTRASALWALAQ 107 (110)
T ss_dssp HHHHHH---TTTTSEEEE-SCSHHHHHHHHHHH
T ss_pred HHHHHH---hCCCCEEEECCCChhHHHHHHHHh
Confidence 222221 257899999999999888765443
No 453
>PLN02427 UDP-apiose/xylose synthase
Probab=24.86 E-value=5.1e+02 Score=27.66 Aligned_cols=31 Identities=6% Similarity=0.079 Sum_probs=21.3
Q ss_pred CCCCCCCcEEEEee--CCcH-HHHHHHhc-CCeEE
Q 007482 4 GQLFSKTTQALFYN--YKQL-PIQRMLDF-DFLCV 34 (602)
Q Consensus 4 ~~l~~p~s~avv~g--~~~~-~~~~~~~~-g~~~V 34 (602)
.+-..|+++.|.|| +-|+ +++.|++. |++++
T Consensus 9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~ 43 (386)
T PLN02427 9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVL 43 (386)
T ss_pred CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEE
Confidence 34467888888874 4455 77788876 58764
No 454
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=24.79 E-value=80 Score=35.53 Aligned_cols=76 Identities=20% Similarity=0.174 Sum_probs=48.1
Q ss_pred ccccCCHHHHhhc---CCCccEEEEecCChhhHHHHHHHhhCCCCcEEEEecCCCCHH---HHHHHHHHHHhCCCeeEcC
Q 007482 57 IPVHSTVEAACAA---HPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEA---DTKQLIAYARSNNKVVIGP 130 (602)
Q Consensus 57 ~~~y~sv~~i~~~---~p~vDlavi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~---~~~~l~~~a~~~g~riiGP 130 (602)
..+|+|+-|++.. .-++++-+..+-+...-..-.+...+ .+. .|++.+||... -.-+..++||++++.++|=
T Consensus 301 ~DaY~Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~-~~d-gIlVPGGFG~RG~eGkI~Ai~yAREn~iP~lGI 378 (533)
T COG0504 301 PDAYKSVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEK-LVD-GILVPGGFGYRGVEGKIAAIRYARENNIPFLGI 378 (533)
T ss_pred hhHHHHHHHHHHhhhhhcCCceeeEEEccccccccchhhhhh-cCC-EEEeCCCCCcCchHHHHHHHHHHHhcCCCEEEE
Confidence 4689999998753 11367777777665321211222221 255 45569999976 3445578899999999985
Q ss_pred Ccccc
Q 007482 131 ATVGG 135 (602)
Q Consensus 131 Nc~G~ 135 (602)
|+|+
T Consensus 379 -ClGm 382 (533)
T COG0504 379 -CLGM 382 (533)
T ss_pred -chhH
Confidence 6665
No 455
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=24.62 E-value=5.2e+02 Score=25.73 Aligned_cols=89 Identities=13% Similarity=0.068 Sum_probs=50.8
Q ss_pred CcEEEEeeCCcH----HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccC--CHHHHhhcCCCccEEEEecCCh
Q 007482 10 TTQALFYNYKQL----PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHS--TVEAACAAHPMADVFINFSSFR 83 (602)
Q Consensus 10 ~s~avv~g~~~~----~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~--sv~~i~~~~p~vDlavi~vp~~ 83 (602)
+.|||+ |++|+ +++..+.-|.++.+-|-.|.+-. .+-+.++.-..+|. ++++.+. ..|.+|.+....
T Consensus 1 mKIaiI-gAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~---~~~~~~i~q~Difd~~~~a~~l~---g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAII-GASGKAGSRILKEALKRGHEVTAIVRNASKLA---ARQGVTILQKDIFDLTSLASDLA---GHDAVISAFGAG 73 (211)
T ss_pred CeEEEE-ecCchhHHHHHHHHHhCCCeeEEEEeChHhcc---ccccceeecccccChhhhHhhhc---CCceEEEeccCC
Confidence 568988 55554 77888888998766665564431 11122233223332 2234343 369988877554
Q ss_pred -hhHHH--------HHHHhhCCCCcEEEEec
Q 007482 84 -SAAAS--------SMAALKQPTIRVVAIIA 105 (602)
Q Consensus 84 -~~~~~--------~~e~~~~~gv~~~viis 105 (602)
...+. .++.....|++..+++-
T Consensus 74 ~~~~~~~~~k~~~~li~~l~~agv~RllVVG 104 (211)
T COG2910 74 ASDNDELHSKSIEALIEALKGAGVPRLLVVG 104 (211)
T ss_pred CCChhHHHHHHHHHHHHHHhhcCCeeEEEEc
Confidence 11222 66777766888777764
No 456
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=24.42 E-value=2.3e+02 Score=31.35 Aligned_cols=133 Identities=12% Similarity=0.029 Sum_probs=71.2
Q ss_pred eeecccccCCHHHHhhcCCCccEEEEecCChhhHHHHHHH-hhCC-CCcEEEEecCCCCHH---HHHHHHHHHHhC--CC
Q 007482 53 EEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAA-LKQP-TIRVVAIIAEGVPEA---DTKQLIAYARSN--NK 125 (602)
Q Consensus 53 ~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~~~~~e~-~~~~-gv~~~viis~Gf~E~---~~~~l~~~a~~~--g~ 125 (602)
+++..+.+. ..++ ++ -|++-++= ....+..++++ +.+. +.+.+.|+|+..+|. |.+.+.+.+++. |+
T Consensus 57 ~~~~~~~~~-tt~l-~E---~div~~~G-g~~~L~~ai~ei~~~~~~P~~I~V~tTC~~e~IGDDi~~v~~e~~~~~~~~ 130 (427)
T PRK02842 57 MIFAEPRFG-TAIL-EE---GDLAGLAD-ANEELDRVVEELIKRRPNISVLFLVGSCPSEVIKLDLEGLAERLSTEFAGV 130 (427)
T ss_pred EeecCCccc-eecc-Cc---chhhhcCC-cHHHHHHHHHHHHhccCCCCEEEEECCChHHhhcCCHHHHHHHhhcccCCC
Confidence 344557774 3343 32 36652233 23334555555 5544 588999999999988 667776666655 88
Q ss_pred eeEcCCcccccccCcccccc-cCCcccccccccCCCCCcEEEEe-cChhHHHHHHHHHHhcCCceeEEe
Q 007482 126 VVIGPATVGGIQAGAFKIGD-TAGTIDNIIHCKLYRPGSVGFVS-KSGGMSNELYNTIARVTDGIYEGI 192 (602)
Q Consensus 126 riiGPNc~G~~~~~~~~l~~-~~~~~~~~~p~~~~~~G~valvS-QSG~l~~~~~~~~~~~g~G~s~~v 192 (602)
.|+--+|-|+-..+..+... +..... .++.....++.|-++. .+.+-..++-..+.+.|+-+..++
T Consensus 131 pvv~v~t~Gf~g~~~~G~~~~~~alv~-~~~~~~~~~~~VniiG~~~~~d~~el~~lL~~~Gi~v~~~l 198 (427)
T PRK02842 131 PVLNYSGSGLETTFTQGEDAVLAALVP-FCPEAPADHPSLVLVGSLADVVEDQLTLEFKKLGIGVVGFL 198 (427)
T ss_pred eEEEeeCCCccccHHHHHHHHHHHHhh-hcccccCCCCcEEEEEeCCcchHHHHHHHHHHcCCeeEEEe
Confidence 99988898885432101000 000010 1111112345554432 222223677777887777775444
No 457
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=24.40 E-value=1.5e+02 Score=25.64 Aligned_cols=80 Identities=13% Similarity=0.003 Sum_probs=37.8
Q ss_pred CCCcEEEEee--CCcHHHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhh
Q 007482 8 SKTTQALFYN--YKQLPIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSA 85 (602)
Q Consensus 8 ~p~s~avv~g--~~~~~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~ 85 (602)
.-+.+.|||| ...+-++.+++.|.++ .-+. |.-. +..+.--.-...|+ +++ + ..|+++++++....
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v-~vis-~~~~----~~~~~i~~~~~~~~--~~l-~---~~~lV~~at~d~~~ 73 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKV-TVIS-PEIE----FSEGLIQLIRREFE--EDL-D---GADLVFAATDDPEL 73 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEE-EEEE-SSEH----HHHTSCEEEESS-G--GGC-T---TESEEEE-SS-HHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEE-EEEC-Cchh----hhhhHHHHHhhhHH--HHH-h---hheEEEecCCCHHH
Confidence 4467788876 2233788888898775 2233 4210 00000011122342 332 2 36777777766554
Q ss_pred HHHHHHHhhCCCCc
Q 007482 86 AASSMAALKQPTIR 99 (602)
Q Consensus 86 ~~~~~e~~~~~gv~ 99 (602)
-..+.+.|.++|+.
T Consensus 74 n~~i~~~a~~~~i~ 87 (103)
T PF13241_consen 74 NEAIYADARARGIL 87 (103)
T ss_dssp HHHHHHHHHHTTSE
T ss_pred HHHHHHHHhhCCEE
Confidence 45566666655543
No 458
>PRK12320 hypothetical protein; Provisional
Probab=24.39 E-value=2.6e+02 Score=33.23 Aligned_cols=88 Identities=8% Similarity=0.047 Sum_probs=47.3
Q ss_pred cEEEEee--CCcH-HHHHHHhcCCeEEEEEeCCCCCC--ccccccCceeecccccCCHHHHhhcCCCccEEEEecCChh-
Q 007482 11 TQALFYN--YKQL-PIQRMLDFDFLCVAGIINPGAEG--FQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRS- 84 (602)
Q Consensus 11 s~avv~g--~~~~-~~~~~~~~g~~~V~gv~~p~~~~--~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~- 84 (602)
++.|.|| +-|+ +++.|++.|++++.-...+.... ..+.+.+ .+.- +.+.++.. ++|.+|.+.+...
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~~~~~ve~v~~----Dl~d-~~l~~al~---~~D~VIHLAa~~~~ 73 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDALDPRVDYVCA----SLRN-PVLQELAG---EADAVIHLAPVDTS 73 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhcccCCceEEEc----cCCC-HHHHHHhc---CCCEEEEcCccCcc
Confidence 4666653 3344 77788888998754433232110 0111111 1111 23444443 4799998876421
Q ss_pred --------hHHHHHHHhhCCCCcEEEEecCC
Q 007482 85 --------AAASSMAALKQPTIRVVAIIAEG 107 (602)
Q Consensus 85 --------~~~~~~e~~~~~gv~~~viis~G 107 (602)
....++++|.+.|++ +|.+|+.
T Consensus 74 ~~~~vNv~Gt~nLleAA~~~GvR-iV~~SS~ 103 (699)
T PRK12320 74 APGGVGITGLAHVANAAARAGAR-LLFVSQA 103 (699)
T ss_pred chhhHHHHHHHHHHHHHHHcCCe-EEEEECC
Confidence 133578999889986 6666654
No 459
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=24.32 E-value=1.3e+02 Score=32.59 Aligned_cols=40 Identities=20% Similarity=0.115 Sum_probs=26.6
Q ss_pred HHHHHHHhhCCCCcEEEEecCCCCHH-HHHHHHHHHHhCCCe
Q 007482 86 AASSMAALKQPTIRVVAIIAEGVPEA-DTKQLIAYARSNNKV 126 (602)
Q Consensus 86 ~~~~~e~~~~~gv~~~viis~Gf~E~-~~~~l~~~a~~~g~r 126 (602)
...++.+|.++||| +|+=+.|.... ..+.+.+++++.|+.
T Consensus 60 L~~~L~~~~~~gIk-vI~NaGg~np~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 60 LRPLLPAAAEKGIK-VITNAGGLNPAGCADIVREIARELGLS 100 (362)
T ss_pred HHHHHHHHHhCCCC-EEEeCCCCCHHHHHHHHHHHHHhcCCC
Confidence 45677777778887 34446666554 566777777776654
No 460
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=24.28 E-value=3.7e+02 Score=24.37 Aligned_cols=116 Identities=14% Similarity=-0.015 Sum_probs=58.2
Q ss_pred EEEEe--eCCcHHHHHHHhcCCeEEEEEeCCC---CC--CccccccCceeecccccCCHHHHhhc-CCCccEEEEecCCh
Q 007482 12 QALFY--NYKQLPIQRMLDFDFLCVAGIINPG---AE--GFQKLFFGQEEIAIPVHSTVEAACAA-HPMADVFINFSSFR 83 (602)
Q Consensus 12 ~avv~--g~~~~~~~~~~~~g~~~V~gv~~p~---~~--~~~~~~~g~~v~G~~~y~sv~~i~~~-~p~vDlavi~vp~~ 83 (602)
+.||| |.+...+++|...|..-+.-++ +. .. +++ .+...+-.|.+--..+++...+ .| ++-+-..+..
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD-~d~v~~~nl~r~-~~~~~~~vG~~Ka~~~~~~l~~~~p--~v~i~~~~~~ 77 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLID-FDTVELSNLNRQ-FLARQADIGKPKAEVAARRLNELNP--GVNVTAVPEG 77 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEc-CCCcCcchhhcc-ccCChhHCCChHHHHHHHHHHHHCC--CcEEEEEeee
Confidence 56664 2333389999999885444454 21 10 111 1221223344433333333332 23 3434344332
Q ss_pred hhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCcccc
Q 007482 84 SAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGG 135 (602)
Q Consensus 84 ~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc~G~ 135 (602)
.......+.. ++.. +||.+..- ......+.++++++++.++...+.|+
T Consensus 78 ~~~~~~~~~~--~~~d-iVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g~ 125 (143)
T cd01483 78 ISEDNLDDFL--DGVD-LVIDAIDN-IAVRRALNRACKELGIPVIDAGGLGL 125 (143)
T ss_pred cChhhHHHHh--cCCC-EEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 2112222222 3444 44434333 45678889999999999888877764
No 461
>PF04422 FrhB_FdhB_N: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term; InterPro: IPR007516 Coenzyme F420 hydrogenase (1.12.99.1 from EC) reduces the low-potential two-electron acceptor coenzyme F420. This entry contains the N termini of F420 hydrogenase and dehydrogenase beta subunits [, ]. The N terminus of Methanobacterium formicicum formate dehydrogenase beta chain (1.2.1.2 from EC, P06130 from SWISSPROT) is also represented in this entry []. This region is often found in association with the 4Fe-4S binding domain, fer4 (IPR001450 from INTERPRO), and the C terminus IPR007525 from INTERPRO.
Probab=24.27 E-value=60 Score=27.27 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=23.4
Q ss_pred EEEEecChhHHHHHHHHHHhcCCceeEEeecc
Q 007482 164 VGFVSKSGGMSNELYNTIARVTDGIYEGIAIG 195 (602)
Q Consensus 164 valvSQSG~l~~~~~~~~~~~g~G~s~~vs~G 195 (602)
|=.-+|||++.++++.++-+.|+ +-.+|.++
T Consensus 13 ir~~~~sGG~vTaLl~~lLe~g~-Vd~vv~~~ 43 (82)
T PF04422_consen 13 IREKSQSGGVVTALLAYLLESGL-VDGVVVVG 43 (82)
T ss_pred hcccCCcHHHHHHHHHHHHHcCC-ceEEEEEe
Confidence 44568999999999999988873 44455555
No 462
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=24.18 E-value=1.4e+02 Score=30.60 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=30.4
Q ss_pred HHHHHHHhhcCCCccEEEEEEecCCC-----c---------HHHH----HHHHHhc-CCCCCEEEEEeCcCccC
Q 007482 204 LSDHILRFNNIPQVKMMVVLGELGGR-----D---------EYSL----VEALKQG-KVNKPVVAWVSGTCARL 258 (602)
Q Consensus 204 ~~d~l~~l~~Dp~t~~I~ly~E~g~~-----~---------~~~f----~~~~r~~-~~~KPVv~~k~Gr~~~g 258 (602)
+.+.++.+.+||++|+|++..+ |-. | .+.+ .+..++. ...||||+..-|.+-.|
T Consensus 40 l~~al~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 112 (261)
T PRK08138 40 LAEHFTELSEDPDIRAIVLTGG-EKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNGYALGG 112 (261)
T ss_pred HHHHHHHHhhCCCeeEEEEECC-CCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEEcH
Confidence 4455555666777777776665 410 1 1111 1222333 27899999998877544
No 463
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=24.13 E-value=1.4e+02 Score=30.50 Aligned_cols=16 Identities=38% Similarity=0.370 Sum_probs=12.9
Q ss_pred CCCCEEEEEeCcCccC
Q 007482 243 VNKPVVAWVSGTCARL 258 (602)
Q Consensus 243 ~~KPVv~~k~Gr~~~g 258 (602)
..||||+..-|.+-.|
T Consensus 99 ~~kPvIaav~G~a~Gg 114 (260)
T PRK05980 99 FPKPVIAAVNGLAFGG 114 (260)
T ss_pred CCCCEEEEEcCEEEhh
Confidence 6899999998876554
No 464
>PRK07324 transaminase; Validated
Probab=24.13 E-value=3e+02 Score=29.48 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=44.1
Q ss_pred ecccccCCHHHHhhcCCCccEEEEecCCh----hhHHHHHHHhhCCCCcEEEEec----CC--CCHHHHHHHHHHHHhCC
Q 007482 55 IAIPVHSTVEAACAAHPMADVFINFSSFR----SAAASSMAALKQPTIRVVAIIA----EG--VPEADTKQLIAYARSNN 124 (602)
Q Consensus 55 ~G~~~y~sv~~i~~~~p~vDlavi~vp~~----~~~~~~~e~~~~~gv~~~viis----~G--f~E~~~~~l~~~a~~~g 124 (602)
.-.|+|++..++....+ .++..+.+... ..++++ ++....+.|.+++.+ +| ++.+..++|.++|+++|
T Consensus 109 ~~~P~y~~~~~~~~~~g-~~v~~v~~~~~~~~~~d~~~l-~~~~~~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~ 186 (373)
T PRK07324 109 SVYPTYQQLYDIPESLG-AEVDYWQLKEENGWLPDLDEL-RRLVRPNTKLICINNANNPTGALMDRAYLEEIVEIARSVD 186 (373)
T ss_pred EcCCCchhHHHHHHHcC-CEEEEEecccccCCCCCHHHH-HHhCCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCC
Confidence 34578888777655432 55555444321 123444 333335778655543 23 34456789999999999
Q ss_pred CeeEcCC
Q 007482 125 KVVIGPA 131 (602)
Q Consensus 125 ~riiGPN 131 (602)
+.|+==+
T Consensus 187 ~~ii~De 193 (373)
T PRK07324 187 AYVLSDE 193 (373)
T ss_pred CEEEEEc
Confidence 8876433
No 465
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=24.06 E-value=1.2e+02 Score=30.96 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=13.1
Q ss_pred CCCCEEEEEeCcCccC
Q 007482 243 VNKPVVAWVSGTCARL 258 (602)
Q Consensus 243 ~~KPVv~~k~Gr~~~g 258 (602)
..||||+..-|..-.|
T Consensus 96 ~~kPvIAav~G~a~Gg 111 (257)
T PRK06495 96 CAKPVIAAVNGPALGA 111 (257)
T ss_pred CCCCEEEEECCeeehh
Confidence 6899999998877554
No 466
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=23.99 E-value=1.2e+02 Score=28.33 Aligned_cols=53 Identities=19% Similarity=0.171 Sum_probs=32.3
Q ss_pred CHHHHHHHhhcCCCccEEEEEEecCCCc---HHHHHHHHHhcCCCCCEEEEEeCcCcc
Q 007482 203 TLSDHILRFNNIPQVKMMVVLGELGGRD---EYSLVEALKQGKVNKPVVAWVSGTCAR 257 (602)
Q Consensus 203 ~~~d~l~~l~~Dp~t~~I~ly~E~g~~~---~~~f~~~~r~~~~~KPVv~~k~Gr~~~ 257 (602)
+..++.+.|.+-...+.|.+|+.-.+.+ +.+..+.++. .+|||+++..|....
T Consensus 16 ~~~~~~~~l~~~~~~~~i~l~inspGG~~~~~~~i~~~i~~--~~~pvi~~v~g~a~s 71 (160)
T cd07016 16 TAKEFKDALDALGDDSDITVRINSPGGDVFAGLAIYNALKR--HKGKVTVKIDGLAAS 71 (160)
T ss_pred CHHHHHHHHHhccCCCCEEEEEECCCCCHHHHHHHHHHHHh--cCCCEEEEEcchHHh
Confidence 3445555544444448999999922233 3445555554 579999999885443
No 467
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=23.96 E-value=1.4e+02 Score=31.87 Aligned_cols=47 Identities=6% Similarity=0.068 Sum_probs=33.2
Q ss_pred HHHHHHHhhCCCCcEEEEecCCCCHH-------HHHHHHHHHHhCCCe-eEcCCc
Q 007482 86 AASSMAALKQPTIRVVAIIAEGVPEA-------DTKQLIAYARSNNKV-VIGPAT 132 (602)
Q Consensus 86 ~~~~~e~~~~~gv~~~viis~Gf~E~-------~~~~l~~~a~~~g~r-iiGPNc 132 (602)
+.+.++++.+.|+|.++|++=||--. ...+..+.+++.|.. +.=.-|
T Consensus 248 ~~~~l~~l~~~G~k~V~vvP~gFv~D~lETl~ei~~e~~~~~~~~G~~~~~~vp~ 302 (322)
T TIGR00109 248 TEELLEKLGEQGVQHIVVVPIGFTADHLETLYEIDEEYREVAEDAGGDKYQRCPA 302 (322)
T ss_pred HHHHHHHHHHcCCceEEEECCcccccchhHHHhhhHHHHHHHHHcCCCeEEECCC
Confidence 56788888888999999999898533 123445778888876 544444
No 468
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.89 E-value=51 Score=37.40 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=20.3
Q ss_pred CCcEEEEe-eCCcH-HHHHHHhcCCeE
Q 007482 9 KTTQALFY-NYKQL-PIQRMLDFDFLC 33 (602)
Q Consensus 9 p~s~avv~-g~~~~-~~~~~~~~g~~~ 33 (602)
+.+|+||| |++|- ..++|.++|+++
T Consensus 15 ~~~VIVIGAGiaGLsAArqL~~~G~~V 41 (501)
T KOG0029|consen 15 KKKVIVIGAGLAGLSAARQLQDFGFDV 41 (501)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCce
Confidence 45889887 46665 889999999985
No 469
>PF07152 YaeQ: YaeQ protein; InterPro: IPR009822 This family consists of several hypothetical bacterial proteins of around 180 residues in length, which are often known as YaeQ. YaeQ is homologous to RfaH, a specialised transcription elongation protein. YaeQ is known to compensate for loss of RfaH function [].; PDB: 3C0U_B 2OT9_A 2G3W_B.
Probab=23.82 E-value=76 Score=30.86 Aligned_cols=59 Identities=15% Similarity=0.185 Sum_probs=37.3
Q ss_pred hcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHhcCCCCCEEEEEeCcC
Q 007482 183 RVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTC 255 (602)
Q Consensus 183 ~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~~~KPVv~~k~Gr~ 255 (602)
..++.|++.+|.+.+. |+ +..|+ |.-|-+.+|+|.+++++..++++++ +-|++|-=|+.
T Consensus 52 ~e~L~FtkGls~~deP--dL--------w~k~~-~g~i~lWIevG~Pd~kRi~kA~~~A---~~V~vy~y~~~ 110 (174)
T PF07152_consen 52 HERLEFTKGLSTDDEP--DL--------WQKDL-TGRIELWIEVGQPDEKRIKKASGRA---DQVVVYTYGRA 110 (174)
T ss_dssp -TTEEE--CCC-TTS---SE--------EEE-T-TS-EEEEEEES---HHHHHHHHHHE---EEEEEEE-CHH
T ss_pred CcCceecCCCCCCCCc--ce--------eeeCC-CCCEEEEEEcCCCCHHHHHHHhccC---CeEEEEEcCcH
Confidence 4589999999999998 43 44444 4789999999999999999999986 34777754444
No 470
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=23.72 E-value=4.3e+02 Score=27.36 Aligned_cols=67 Identities=10% Similarity=0.113 Sum_probs=40.0
Q ss_pred ccCCHHHHhhcCCCccEEEEecCC---hhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCee
Q 007482 59 VHSTVEAACAAHPMADVFINFSSF---RSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVV 127 (602)
Q Consensus 59 ~y~sv~~i~~~~p~vDlavi~vp~---~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~ri 127 (602)
++..++++-.+.+++.+.+..=-. +.-++..+++|.+.|+.++||. ..|-+..+++.+.++++|+.+
T Consensus 74 ~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIip--DLP~ee~~~~~~~~~~~gl~~ 143 (259)
T PF00290_consen 74 IFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIP--DLPPEESEELREAAKKHGLDL 143 (259)
T ss_dssp HHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEET--TSBGGGHHHHHHHHHHTT-EE
T ss_pred HHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEc--CCChHHHHHHHHHHHHcCCeE
Confidence 355566654233345554432211 1124567888988999988773 444455678889999999764
No 471
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=23.70 E-value=7.9e+02 Score=27.26 Aligned_cols=88 Identities=17% Similarity=0.260 Sum_probs=56.2
Q ss_pred CCCCcEEEEe-cChhHHHHHHHHHHhcCCceeEE----eeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcH--
Q 007482 159 YRPGSVGFVS-KSGGMSNELYNTIARVTDGIYEG----IAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDE-- 231 (602)
Q Consensus 159 ~~~G~valvS-QSG~l~~~~~~~~~~~g~G~s~~----vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~-- 231 (602)
.-|-.||+|| .+|+--.-++..+.++.-.+... .==|.++ --++...|+++...++..+|++-== |+.-+
T Consensus 127 ~~p~~i~vits~~~aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a--~~~i~~al~~~~~~~~~dviii~RG-GGs~eDL 203 (432)
T TIGR00237 127 HFPKRVGVITSQTGAALADILHILKRRDPSLKVVIYPTLVQGEGA--VQSIVESIELANTKNECDVLIVGRG-GGSLEDL 203 (432)
T ss_pred CCCCEEEEEeCCccHHHHHHHHHHHhhCCCceEEEecccccCccH--HHHHHHHHHHhhcCCCCCEEEEecC-CCCHHHh
Confidence 3577899995 67777777888888775433322 2236777 6778888888887777777765433 33322
Q ss_pred -----HHHHHHHHhcCCCCCEEEEE
Q 007482 232 -----YSLVEALKQGKVNKPVVAWV 251 (602)
Q Consensus 232 -----~~f~~~~r~~~~~KPVv~~k 251 (602)
+.+++++- ....|||.-.
T Consensus 204 ~~Fn~e~~~rai~--~~~~Pvis~i 226 (432)
T TIGR00237 204 WSFNDEKVARAIF--LSKIPIISAV 226 (432)
T ss_pred hhcCcHHHHHHHH--cCCCCEEEec
Confidence 33444443 3788999653
No 472
>PRK05957 aspartate aminotransferase; Provisional
Probab=23.56 E-value=3.4e+02 Score=29.11 Aligned_cols=70 Identities=19% Similarity=0.162 Sum_probs=41.0
Q ss_pred ccccCCHHHHhhcCCCccEEEEecCCh--hhHHHHHHHhhCCCCcEEEEec----CCC--CHHHHHHHHHHHHhCCCeeE
Q 007482 57 IPVHSTVEAACAAHPMADVFINFSSFR--SAAASSMAALKQPTIRVVAIIA----EGV--PEADTKQLIAYARSNNKVVI 128 (602)
Q Consensus 57 ~~~y~sv~~i~~~~p~vDlavi~vp~~--~~~~~~~e~~~~~gv~~~viis----~Gf--~E~~~~~l~~~a~~~g~rii 128 (602)
-|+|.......... .+....+.+... ..++.+.+.+ ..+.|.+++.+ +|. ++++.++|.++|+++|+.++
T Consensus 120 ~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~d~~~l~~~i-~~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li 197 (389)
T PRK05957 120 TPYYFNHEMAITMA-GCQPILVPTDDNYQLQPEAIEQAI-TPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHI 197 (389)
T ss_pred CCCCcCHHHHHHhc-CCEEEEeecCCCCCcCHHHHHHhc-CcCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEE
Confidence 37776665543332 244443333211 1234444444 35788777654 343 55578899999999999987
No 473
>PRK06207 aspartate aminotransferase; Provisional
Probab=23.54 E-value=4.2e+02 Score=28.71 Aligned_cols=45 Identities=22% Similarity=0.202 Sum_probs=28.9
Q ss_pred HHHHHHhhCCCCcEEEEecCC------CCHHHHHHHHHHHHhCCCeeEcCCc
Q 007482 87 ASSMAALKQPTIRVVAIIAEG------VPEADTKQLIAYARSNNKVVIGPAT 132 (602)
Q Consensus 87 ~~~~e~~~~~gv~~~viis~G------f~E~~~~~l~~~a~~~g~riiGPNc 132 (602)
+.+.+.+. .++|.+++.+-. ++.+..++|.++|+++|+-|+==++
T Consensus 169 ~~l~~~~~-~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~ 219 (405)
T PRK06207 169 DQLEEAFK-AGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQL 219 (405)
T ss_pred HHHHHhhh-hcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 44444444 678866665433 3444678999999999988773333
No 474
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=23.46 E-value=1.4e+02 Score=30.53 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=13.1
Q ss_pred CCCCEEEEEeCcCccC
Q 007482 243 VNKPVVAWVSGTCARL 258 (602)
Q Consensus 243 ~~KPVv~~k~Gr~~~g 258 (602)
..||||+..-|..-.|
T Consensus 96 ~~kPvIaav~G~a~Gg 111 (260)
T PRK07657 96 LPQPVIAAINGIALGG 111 (260)
T ss_pred CCCCEEEEEcCEeech
Confidence 6899999998877654
No 475
>PRK05443 polyphosphate kinase; Provisional
Probab=23.39 E-value=1.8e+02 Score=34.45 Aligned_cols=84 Identities=17% Similarity=0.125 Sum_probs=59.8
Q ss_pred HHHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHhcC-CCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHH
Q 007482 204 LSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGK-VNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAK 282 (602)
Q Consensus 204 ~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~-~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~ 282 (602)
+.|+|+--..||++..|=+.+= =+.....+++++.+|+ ++|-|-++-..+..- +.+....|
T Consensus 353 ~~~~i~~Aa~DP~V~~Ik~tlY-r~~~~s~iv~aL~~Aa~~Gk~V~vlve~karf-----------------de~~n~~~ 414 (691)
T PRK05443 353 VVEFLRQAAADPDVLAIKQTLY-RTSKDSPIVDALIEAAENGKQVTVLVELKARF-----------------DEEANIRW 414 (691)
T ss_pred HHHHHHHhccCCCeeEEEEEEE-EecCCHHHHHHHHHHHHcCCEEEEEEccCccc-----------------cHHHHHHH
Confidence 4577777888999998876655 3343467777776665 899999998776522 22234778
Q ss_pred HHHHHHcCCcccCCHHHHHHHHH
Q 007482 283 NQALRDAGAVVPTSYEAFESAIK 305 (602)
Q Consensus 283 ~a~~~qaGvi~v~~~~el~~~~~ 305 (602)
-..|+++|+-++..+..+..=+|
T Consensus 415 ~~~L~~aGv~V~y~~~~~k~HaK 437 (691)
T PRK05443 415 ARRLEEAGVHVVYGVVGLKTHAK 437 (691)
T ss_pred HHHHHHcCCEEEEccCCccceeE
Confidence 89999999999877766544443
No 476
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=23.30 E-value=3.7e+02 Score=28.22 Aligned_cols=113 Identities=12% Similarity=0.138 Sum_probs=61.6
Q ss_pred CCcEEEEeeCCcH---HHHHHHhcCCeEEEEEeCCCCC-----CccccccCceeeccc----ccCCHHHHhhcCCCccEE
Q 007482 9 KTTQALFYNYKQL---PIQRMLDFDFLCVAGIINPGAE-----GFQKLFFGQEEIAIP----VHSTVEAACAAHPMADVF 76 (602)
Q Consensus 9 p~s~avv~g~~~~---~~~~~~~~g~~~V~gv~~p~~~-----~~~~~~~g~~v~G~~----~y~sv~~i~~~~p~vDla 76 (602)
..+|.|+ |.+|- +++||...|..-|.-++ +..- ++ .+|+.++-.|.+ +...++++ .| ++-
T Consensus 19 ~s~VLIv-G~gGLG~EiaKnLalaGVg~itI~D-~d~ve~snL~r-qf~~~~~dIGk~Kaea~~~~L~eL---Np--~V~ 90 (286)
T cd01491 19 KSNVLIS-GLGGLGVEIAKNLILAGVKSVTLHD-TKPCSWSDLSS-QFYLREEDIGKNRAEASQARLAEL---NP--YVP 90 (286)
T ss_pred cCcEEEE-cCCHHHHHHHHHHHHcCCCeEEEEc-CCccchhhccc-CccCChHHhCHHHHHHHHHHHHHH---CC--CCE
Confidence 3455555 55443 99999999987554555 3110 11 123332333332 11223332 23 444
Q ss_pred EEecCChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCcccccc
Q 007482 77 INFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQ 137 (602)
Q Consensus 77 vi~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc~G~~~ 137 (602)
|-...... .++.+. +.. +||.+.. +...+.++-++|+++++.++--++.|+.-
T Consensus 91 V~~~~~~~-~~~~l~-----~fd-vVV~~~~-~~~~~~~in~~c~~~~ipfI~a~~~G~~G 143 (286)
T cd01491 91 VTVSTGPL-TTDELL-----KFQ-VVVLTDA-SLEDQLKINEFCHSPGIKFISADTRGLFG 143 (286)
T ss_pred EEEEeccC-CHHHHh-----cCC-EEEEecC-CHHHHHHHHHHHHHcCCEEEEEeccccEE
Confidence 44443321 233333 233 5555543 66677889999999999999999988863
No 477
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=23.25 E-value=7.6e+02 Score=25.35 Aligned_cols=112 Identities=8% Similarity=0.024 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHhCCCeeEcCCcccccccCcccccccCCcccccccccCCCCCcEEEEec--C----hhHHHHHHHH
Q 007482 107 GVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSK--S----GGMSNELYNT 180 (602)
Q Consensus 107 Gf~E~~~~~l~~~a~~~g~riiGPNc~G~~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQ--S----G~l~~~~~~~ 180 (602)
+++|+..+++.++|++.|-+ ||...- .+. .-+...|+++.- + ..+...+...
T Consensus 31 ~vs~~tr~rV~~~a~elgY~---pn~~a~------~l~-------------~~~~~~Igvi~~~~~~~~~~~~~~gi~~~ 88 (331)
T PRK14987 31 QVSVALRGKIAAALDELGYI---PNRAPD------ILS-------------NATSRAIGVLLPSLTNQVFAEVLRGIESV 88 (331)
T ss_pred CCCHHHHHHHHHHHHHhCCC---ccHHHH------HHh-------------hCCCCEEEEEeCCCcchhHHHHHHHHHHH
Confidence 57788999999999998864 664321 000 001223444432 1 2334445555
Q ss_pred HHhcCCceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHhcCCCCCEEEE
Q 007482 181 IARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAW 250 (602)
Q Consensus 181 ~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~~~KPVv~~ 250 (602)
+.++|.-+.. ..++++. + ...+.++.+. +-++..|++.-. . .+ ...++.+++ .+.|||.+
T Consensus 89 ~~~~g~~~~~-~~~~~~~--~-~~~~~~~~~~-~~~vdgiI~~~~-~-~~-~~~~~~l~~--~~iPvV~~ 148 (331)
T PRK14987 89 TDAHGYQTML-AHYGYKP--E-MEQERLESML-SWNIDGLILTER-T-HT-PRTLKMIEV--AGIPVVEL 148 (331)
T ss_pred HHHCCCEEEE-ecCCCCH--H-HHHHHHHHHH-hcCCCEEEEcCC-C-CC-HHHHHHHHh--CCCCEEEE
Confidence 6666544432 2333332 2 3446666654 467888887532 2 22 233444443 57899986
No 478
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=23.22 E-value=4.3e+02 Score=25.84 Aligned_cols=122 Identities=11% Similarity=0.039 Sum_probs=58.2
Q ss_pred CCCCCcEEEEe--eCCcHHHHHHHhcCCeEEEEEeCCC---C--CCccccccCceeecccccCCHHHHhhc-CCCccEEE
Q 007482 6 LFSKTTQALFY--NYKQLPIQRMLDFDFLCVAGIINPG---A--EGFQKLFFGQEEIAIPVHSTVEAACAA-HPMADVFI 77 (602)
Q Consensus 6 l~~p~s~avv~--g~~~~~~~~~~~~g~~~V~gv~~p~---~--~~~~~~~~g~~v~G~~~y~sv~~i~~~-~p~vDlav 77 (602)
-+...++.||| |.+...+++|...|..-+.-++ +. . =++| +++..+-.|.+--..+++-+.+ .| ++-+
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD-~d~ve~sNL~Rq-~l~~~~diG~~Ka~~~~~~l~~~np--~v~i 93 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVD-DDHVDLSNLQRQ-ILFTEEDVGRPKVEVAAQRLRELNS--DIQV 93 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEec-CCEEcccchhhh-hccChhhCCChHHHHHHHHHHHhCC--CCEE
Confidence 35566777775 1333388999998875433444 31 0 0111 1222222343322222222222 23 4444
Q ss_pred EecCChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCcccc
Q 007482 78 NFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGG 135 (602)
Q Consensus 78 i~vp~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc~G~ 135 (602)
-..+... .+.-+++.- ++...+|. +..-. .....+-+.++++++.++-..+.|+
T Consensus 94 ~~~~~~i-~~~~~~~~~-~~~D~Vi~-~~d~~-~~r~~l~~~~~~~~ip~i~~~~~g~ 147 (202)
T TIGR02356 94 TALKERV-TAENLELLI-NNVDLVLD-CTDNF-ATRYLINDACVALGTPLISAAVVGF 147 (202)
T ss_pred EEehhcC-CHHHHHHHH-hCCCEEEE-CCCCH-HHHHHHHHHHHHcCCCEEEEEeccC
Confidence 3444322 122233333 35554443 43322 3455678889999998776665554
No 479
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=23.21 E-value=3.4e+02 Score=28.52 Aligned_cols=94 Identities=16% Similarity=0.015 Sum_probs=48.1
Q ss_pred CcEEEEe-eCCcH-HHHHHHhcCCeEEEEEeCCCCCCccccccCceeec------------ccccCCHHHHhhcCCCccE
Q 007482 10 TTQALFY-NYKQL-PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIA------------IPVHSTVEAACAAHPMADV 75 (602)
Q Consensus 10 ~s~avv~-g~~~~-~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G------------~~~y~sv~~i~~~~p~vDl 75 (602)
++|+||| |.-|. ....|.+.|+++. .+.-.+....... .|-.+.. +.+..+.++ .. +.|+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~-~~~r~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~D~ 76 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVT-LIGRARIGDELRA-HGLTLTDYRGRDVRVPPSAIAFSTDPAA-LA---TADL 76 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEE-EEecHHHHHHHHh-cCceeecCCCcceecccceeEeccChhh-cc---CCCE
Confidence 4688886 44444 6777778888752 3331111000000 0111110 122333432 22 4899
Q ss_pred EEEecCChhhHHHHHHHhhCC-CCcE-EEEecCCCCH
Q 007482 76 FINFSSFRSAAASSMAALKQP-TIRV-VAIIAEGVPE 110 (602)
Q Consensus 76 avi~vp~~~~~~~~~e~~~~~-gv~~-~viis~Gf~E 110 (602)
++++|+... ...+++.+... .-.. ++.++.|+..
T Consensus 77 vil~vk~~~-~~~~~~~l~~~~~~~~iii~~~nG~~~ 112 (341)
T PRK08229 77 VLVTVKSAA-TADAAAALAGHARPGAVVVSFQNGVRN 112 (341)
T ss_pred EEEEecCcc-hHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence 999999875 56777776532 1112 3445678864
No 480
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=23.20 E-value=1.2e+02 Score=27.23 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=36.1
Q ss_pred CCHHHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHhcC
Q 007482 202 STLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGK 242 (602)
Q Consensus 202 v~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~ 242 (602)
++..++.+-+.+|-+-.-|+.+.|..-++|.+|++.+++.+
T Consensus 6 l~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA 46 (120)
T cd03074 6 LKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVA 46 (120)
T ss_pred ccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHH
Confidence 56778899999999999999999978899999999998854
No 481
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=23.19 E-value=2.4e+02 Score=24.58 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=31.7
Q ss_pred HHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCee
Q 007482 87 ASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVV 127 (602)
Q Consensus 87 ~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~ri 127 (602)
..+++++.+..++ .|++++-.++...+.+..+|+++++.+
T Consensus 22 ~~v~kai~~gkak-lViiA~D~~~~~~~~i~~~c~~~~Ip~ 61 (99)
T PRK01018 22 KRTIKAIKLGKAK-LVIVASNCPKDIKEDIEYYAKLSGIPV 61 (99)
T ss_pred HHHHHHHHcCCce-EEEEeCCCCHHHHHHHHHHHHHcCCCE
Confidence 4577777755565 666688899988999999999999985
No 482
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=23.17 E-value=1.4e+02 Score=30.41 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=12.9
Q ss_pred CCCCEEEEEeCcCccC
Q 007482 243 VNKPVVAWVSGTCARL 258 (602)
Q Consensus 243 ~~KPVv~~k~Gr~~~g 258 (602)
..||||+..-|..-.|
T Consensus 93 ~~kpvIAav~G~a~Gg 108 (257)
T PRK07658 93 FSKPVIAAIHGAALGG 108 (257)
T ss_pred CCCCEEEEEcCeeeeH
Confidence 6899999998876544
No 483
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=22.97 E-value=1.7e+02 Score=27.04 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=30.3
Q ss_pred hHHHHHHHhhCCCCcEEEEec---------CCCCHH----HHHHHHHHHHhCCCeeE
Q 007482 85 AAASSMAALKQPTIRVVAIIA---------EGVPEA----DTKQLIAYARSNNKVVI 128 (602)
Q Consensus 85 ~~~~~~e~~~~~gv~~~viis---------~Gf~E~----~~~~l~~~a~~~g~rii 128 (602)
...-+|+.|.+.|++..+|+. .|++.. --++|.+.++++|.+++
T Consensus 37 Dl~l~L~~~k~~g~~~lfVi~PvNg~wydytG~~~~~r~~~y~kI~~~~~~~gf~v~ 93 (130)
T PF04914_consen 37 DLQLLLDVCKELGIDVLFVIQPVNGKWYDYTGLSKEMRQEYYKKIKYQLKSQGFNVA 93 (130)
T ss_dssp HHHHHHHHHHHTT-EEEEEE----HHHHHHTT--HHHHHHHHHHHHHHHHTTT--EE
T ss_pred HHHHHHHHHHHcCCceEEEecCCcHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 356789999999999888886 488766 35778889999998764
No 484
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=22.91 E-value=1.6e+02 Score=30.04 Aligned_cols=16 Identities=44% Similarity=0.484 Sum_probs=13.0
Q ss_pred CCCCEEEEEeCcCccC
Q 007482 243 VNKPVVAWVSGTCARL 258 (602)
Q Consensus 243 ~~KPVv~~k~Gr~~~g 258 (602)
..||||+..-|..-.|
T Consensus 93 ~~kPvIaav~G~a~Gg 108 (256)
T TIGR03210 93 VPKPVIARVQGYAIGG 108 (256)
T ss_pred CCCCEEEEECCEEehh
Confidence 6899999998876654
No 485
>PTZ00377 alanine aminotransferase; Provisional
Probab=22.89 E-value=3.1e+02 Score=30.62 Aligned_cols=35 Identities=17% Similarity=0.362 Sum_probs=25.7
Q ss_pred CCcEEEEecC----C--CCHHHHHHHHHHHHhCCCeeEcCC
Q 007482 97 TIRVVAIIAE----G--VPEADTKQLIAYARSNNKVVIGPA 131 (602)
Q Consensus 97 gv~~~viis~----G--f~E~~~~~l~~~a~~~g~riiGPN 131 (602)
++|.+++++- | ++++..++|+++|+++++-||==+
T Consensus 218 ~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De 258 (481)
T PTZ00377 218 TPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADE 258 (481)
T ss_pred CeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEeh
Confidence 5777777753 3 455578999999999998876433
No 486
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=22.87 E-value=2.6e+02 Score=23.69 Aligned_cols=43 Identities=14% Similarity=0.154 Sum_probs=31.7
Q ss_pred HHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcC
Q 007482 87 ASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGP 130 (602)
Q Consensus 87 ~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGP 130 (602)
..+++++....++ .|++++-.++...+.+..+|+.+++.++=.
T Consensus 14 ~~vlkaIk~gkak-LViiA~Da~~~~~k~i~~~c~~~~Vpv~~~ 56 (82)
T PRK13601 14 KQTLKAITNCNVL-QVYIAKDAEEHVTKKIKELCEEKSIKIVYI 56 (82)
T ss_pred HHHHHHHHcCCee-EEEEeCCCCHHHHHHHHHHHHhCCCCEEEe
Confidence 4567777644454 666788888888888999999999887533
No 487
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=22.81 E-value=1.4e+02 Score=30.67 Aligned_cols=54 Identities=22% Similarity=0.372 Sum_probs=31.3
Q ss_pred HHHHHHHhhcCCCccEEEEEEecCC---------------CcH---HHHH----HHHHhc-CCCCCEEEEEeCcCccC
Q 007482 204 LSDHILRFNNIPQVKMMVVLGELGG---------------RDE---YSLV----EALKQG-KVNKPVVAWVSGTCARL 258 (602)
Q Consensus 204 ~~d~l~~l~~Dp~t~~I~ly~E~g~---------------~~~---~~f~----~~~r~~-~~~KPVv~~k~Gr~~~g 258 (602)
+.+.++.+..||++|+|++-.+ |- .+. .++. +..++. ...||||+..-|..-.|
T Consensus 44 l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 120 (268)
T PRK07327 44 LADIWRDVDRDPDVRVVLIRGE-GKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSAIHGPAVGA 120 (268)
T ss_pred HHHHHHHhhhCCCceEEEEECC-CCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeeh
Confidence 4556666777777777777766 41 000 1111 122222 36899999988876543
No 488
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=22.80 E-value=5.3e+02 Score=26.63 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHhCCCeeEcCCcccccccCcccccccCCcccccccccCCCCCcEEEEecC--hhHH----HHHHHH
Q 007482 107 GVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKS--GGMS----NELYNT 180 (602)
Q Consensus 107 Gf~E~~~~~l~~~a~~~g~riiGPNc~G~~~~~~~~l~~~~~~~~~~~p~~~~~~G~valvSQS--G~l~----~~~~~~ 180 (602)
+++++..+++.++|++.|-. ||..-= .+. .-+...|+++.-+ ..+. ..+-..
T Consensus 27 ~vs~~tr~~V~~~a~elgY~---pn~~a~------~l~-------------~~~~~~i~vi~~~~~~~~~~~~~~gi~~~ 84 (341)
T PRK10703 27 FVAEETRNAVWAAIKELHYS---PSAVAR------SLK-------------VNHTKSIGLLATSSEAPYFAEIIEAVEKN 84 (341)
T ss_pred CCCHHHHHHHHHHHHHHCCC---cCHHHH------HHh-------------hCCCCeEEEEeCCCCCchHHHHHHHHHHH
Confidence 57888999999999998854 553210 110 0022345544321 1222 334445
Q ss_pred HHhcCCceeEEeec-cCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCcHHHHHHHHHhcCCCCCEEEE
Q 007482 181 IARVTDGIYEGIAI-GGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAW 250 (602)
Q Consensus 181 ~~~~g~G~s~~vs~-Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~~~~f~~~~r~~~~~KPVv~~ 250 (602)
+.+.| +...+.. +++. -...++++.+.. ....+|++... ....+.++.+++. .+.|||++
T Consensus 85 ~~~~g--~~~~~~~~~~~~---~~~~~~i~~l~~-~~vdgiii~~~---~~~~~~~~~l~~~-~~iPvV~~ 145 (341)
T PRK10703 85 CYQKG--YTLILCNAWNNL---EKQRAYLSMLAQ-KRVDGLLVMCS---EYPEPLLAMLEEY-RHIPMVVM 145 (341)
T ss_pred HHHCC--CEEEEEeCCCCH---HHHHHHHHHHHH-cCCCEEEEecC---CCCHHHHHHHHhc-CCCCEEEE
Confidence 55555 4433333 3322 235677777655 45777776543 2223444555431 47899988
No 489
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=22.73 E-value=1.6e+02 Score=30.34 Aligned_cols=16 Identities=38% Similarity=0.663 Sum_probs=13.2
Q ss_pred CCCCEEEEEeCcCccC
Q 007482 243 VNKPVVAWVSGTCARL 258 (602)
Q Consensus 243 ~~KPVv~~k~Gr~~~g 258 (602)
..||||+..-|..-.|
T Consensus 110 ~~kPvIaav~G~a~Gg 125 (275)
T PLN02664 110 CRKPVIAAIHGACIGG 125 (275)
T ss_pred CCCCEEEEECCccccc
Confidence 6899999998877654
No 490
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=22.72 E-value=1.1e+03 Score=26.43 Aligned_cols=240 Identities=13% Similarity=0.115 Sum_probs=115.3
Q ss_pred ccEEEEecCChhhHHHHHHH-hhCCCCcEEEEecCC-CCHHHHHHH------------------------HHHHHh----
Q 007482 73 ADVFINFSSFRSAAASSMAA-LKQPTIRVVAIIAEG-VPEADTKQL------------------------IAYARS---- 122 (602)
Q Consensus 73 vDlavi~vp~~~~~~~~~e~-~~~~gv~~~viis~G-f~E~~~~~l------------------------~~~a~~---- 122 (602)
...++.++... +-.+++++ +..+|++.+|.+..| .++.++.++ .++.++
T Consensus 132 ~~~Il~ATSGd-TG~Aa~aaf~~~~gi~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G~fDd~q~~vk~~~~d~~~~ 210 (460)
T cd01560 132 RITILVATSGD-TGSAAIEGFRGKPNVDVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEGDFDDCQSLVKALFADEDFN 210 (460)
T ss_pred CeEEEEcCCCc-HHHHHHHHHhCcCCCEEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcCCHHHHHHHHHHHhcChhhH
Confidence 45556666554 33454555 455799999999987 887633222 222222
Q ss_pred CCCeeEcCCcccccccCcccccccCCcccccccccCCC--CC-cEEEEecChhHHHHHHH-HHHhcCCceeEEeeccCCC
Q 007482 123 NNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYR--PG-SVGFVSKSGGMSNELYN-TIARVTDGIYEGIAIGGDV 198 (602)
Q Consensus 123 ~g~riiGPNc~G~~~~~~~~l~~~~~~~~~~~p~~~~~--~G-~valvSQSG~l~~~~~~-~~~~~g~G~s~~vs~Gn~~ 198 (602)
.+..+..-|| +|+.. -++-+.--|.... .... .| ++.++-=+|+++..+.. .+.+.|+.+.++|..=|+.
T Consensus 211 ~~~~l~saNS---iN~~R-i~~Q~~yyf~a~~--ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n 284 (460)
T cd01560 211 KKLKLSSANS---INWAR-ILAQIVYYFYAYL--QLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNEN 284 (460)
T ss_pred hcceEEEEec---cCHHH-HHHHHHHHHHHHH--HhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCC
Confidence 1234555555 34432 1110000011000 0111 23 67888888888777654 4566788888888876665
Q ss_pred CCCCCHHHHHH-Hhhc---CC---CccEEEEEEecCC-CcHHHHHHHHHhcCC-------------CCCEEEEEeCcCcc
Q 007482 199 FPGSTLSDHIL-RFNN---IP---QVKMMVVLGELGG-RDEYSLVEALKQGKV-------------NKPVVAWVSGTCAR 257 (602)
Q Consensus 199 ~~dv~~~d~l~-~l~~---Dp---~t~~I~ly~E~g~-~~~~~f~~~~r~~~~-------------~KPVv~~k~Gr~~~ 257 (602)
+++. ++.. |+ ..+.+.=-+.|+. .+.++++.+++..-. ++ .-+.. +.
T Consensus 285 -------~il~~~~~~G~y~~~~~~~~T~spamdI~~psn~eR~L~~l~~~~g~~~~~~m~~~~~~g~--~~~~~---~~ 352 (460)
T cd01560 285 -------DVLRRFFKTGRYDRRESLKQTLSPAMDILKSSNFERLLFLLAGRDRTKVKMLMEEFEATGF--LSLPK---EE 352 (460)
T ss_pred -------hHHHHHHHcCCCcCCCCCCCCcCchhhcCCCCCHHHHHHHHhCCCHHHHHHHHHHHHhcCC--EecCH---HH
Confidence 4454 4431 21 1223333334333 456676666543110 11 11100 00
Q ss_pred CccccccccccCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHhHhhcCCCCCCCCCCCCCCCcchHHHh
Q 007482 258 LFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAI 336 (602)
Q Consensus 258 g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~~a~ 336 (602)
- .+. ...=.+..-+|.++.+....+.++.|.+....-.--+..++.+..+ +....++....++.+.|.....+.
T Consensus 353 l--~~~-~~~f~a~~vsD~ei~~~i~~~~~~~G~~vdPhtAva~aa~~~~~~~--~~~~~V~l~Ta~p~Kf~~~v~~a~ 426 (460)
T cd01560 353 L--KKL-REDFSSGSVSDEETLETIREVYEETGYLIDPHTAVGVRAAERVRKS--PGTPGVVLSTAHPAKFPEAVKEAL 426 (460)
T ss_pred H--Hhh-hccceEEEECHHHHHHHHHHHHHhcCEEECchHHHHHHHHHHHHhc--cCCCEEEEecCCcccCHHHHHHhh
Confidence 0 000 0000112223445566666777888998866555544444333322 223344455555666565444444
No 491
>PRK06444 prephenate dehydrogenase; Provisional
Probab=22.69 E-value=1.8e+02 Score=28.76 Aligned_cols=49 Identities=10% Similarity=-0.029 Sum_probs=0.0
Q ss_pred CcEEEEeeCCcH---HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEecCChhhH
Q 007482 10 TTQALFYNYKQL---PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAA 86 (602)
Q Consensus 10 ~s~avv~g~~~~---~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~vp~~~~~ 86 (602)
+.++||||.++- ..+.+.+.||.+. .. +.|++|+++|... .
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------------~~---~~DlVilavPv~~-~ 44 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------------IK---KADHAFLSVPIDA-A 44 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------------EC---CCCEEEEeCCHHH-H
Q ss_pred HHHHHHhh
Q 007482 87 ASSMAALK 94 (602)
Q Consensus 87 ~~~~e~~~ 94 (602)
.+++++..
T Consensus 45 ~~~i~~~~ 52 (197)
T PRK06444 45 LNYIESYD 52 (197)
T ss_pred HHHHHHhC
No 492
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=22.59 E-value=5.6e+02 Score=28.17 Aligned_cols=51 Identities=14% Similarity=0.127 Sum_probs=34.1
Q ss_pred HHHHHHHhhCCCCcEEEEecCCC-CHHHHHHHHHHHHhCCCeeEcCCcccccccC
Q 007482 86 AASSMAALKQPTIRVVAIIAEGV-PEADTKQLIAYARSNNKVVIGPATVGGIQAG 139 (602)
Q Consensus 86 ~~~~~e~~~~~gv~~~viis~Gf-~E~~~~~l~~~a~~~g~riiGPNc~G~~~~~ 139 (602)
.+.+++.|.+.++..++-.. || +|. ..+.+.+++.|++++||+.--+-...
T Consensus 63 ~~~l~~~a~~~~id~I~p~~-~~~~e~--~~~~~~~e~~gi~~~g~~~~~~~~~~ 114 (451)
T PRK08591 63 IPAIISAAEITGADAIHPGY-GFLSEN--ADFAEICEDSGFTFIGPSAETIRLMG 114 (451)
T ss_pred HHHHHHHHHHhCCCEEEECC-CccccC--HHHHHHHHHCCCceECcCHHHHHHhc
Confidence 46788888888888665533 33 332 24677888999999998764443333
No 493
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=22.39 E-value=1.5e+02 Score=30.14 Aligned_cols=16 Identities=38% Similarity=0.511 Sum_probs=13.0
Q ss_pred CCCCEEEEEeCcCccC
Q 007482 243 VNKPVVAWVSGTCARL 258 (602)
Q Consensus 243 ~~KPVv~~k~Gr~~~g 258 (602)
..||||+.--|..-.|
T Consensus 91 ~~kPvIAav~G~a~Gg 106 (255)
T PRK09674 91 FNKPLIAAVNGYALGA 106 (255)
T ss_pred CCCCEEEEECCEeehH
Confidence 6899999998877544
No 494
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=22.37 E-value=5.6e+02 Score=25.49 Aligned_cols=106 Identities=8% Similarity=0.056 Sum_probs=63.8
Q ss_pred CCCCCCcEEEEeeCCcH----HHHHHHhcCCeEEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCccEEEEec
Q 007482 5 QLFSKTTQALFYNYKQL----PIQRMLDFDFLCVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFS 80 (602)
Q Consensus 5 ~l~~p~s~avv~g~~~~----~~~~~~~~g~~~V~gv~~p~~~~~~~~~~g~~v~G~~~y~sv~~i~~~~p~vDlavi~v 80 (602)
.|..-+-++|+=+.... ..+.|.+.|.+.+- +.+ +. -..+..++++.++.| |+.| -+
T Consensus 4 ~l~~~~liaVlr~~~~e~a~~~~~al~~~Gi~~iE-it~-~t--------------~~a~~~i~~l~~~~~--~~~v-GA 64 (204)
T TIGR01182 4 LLREAKIVPVIRIDDVDDALPLAKALIEGGLRVLE-VTL-RT--------------PVALDAIRLLRKEVP--DALI-GA 64 (204)
T ss_pred HHhhCCEEEEEecCCHHHHHHHHHHHHHcCCCEEE-EeC-CC--------------ccHHHHHHHHHHHCC--CCEE-EE
Confidence 34445566777565443 77888889998642 221 11 134456666655554 5433 22
Q ss_pred CChhhHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHHHHhCCCeeEcCCcccccccCc
Q 007482 81 SFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGA 140 (602)
Q Consensus 81 p~~~~~~~~~e~~~~~gv~~~viis~Gf~E~~~~~l~~~a~~~g~riiGPNc~G~~~~~~ 140 (602)
-.-...++ .+++.+.|.+.+ +|-++.+ ++.+.|+++|+..+ .|.++|.+
T Consensus 65 GTVl~~~~-a~~a~~aGA~Fi--vsP~~~~----~v~~~~~~~~i~~i----PG~~TptE 113 (204)
T TIGR01182 65 GTVLNPEQ-LRQAVDAGAQFI--VSPGLTP----ELAKHAQDHGIPII----PGVATPSE 113 (204)
T ss_pred EeCCCHHH-HHHHHHcCCCEE--ECCCCCH----HHHHHHHHcCCcEE----CCCCCHHH
Confidence 22222344 444555899875 5888854 78999999999654 47777765
No 495
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=22.35 E-value=1.7e+02 Score=30.02 Aligned_cols=54 Identities=20% Similarity=0.348 Sum_probs=32.7
Q ss_pred HHHHHHHhhcCCCccEEEEEEecCCC------c----------H---HHHHHH----HHhc-CCCCCEEEEEeCcCccC
Q 007482 204 LSDHILRFNNIPQVKMMVVLGELGGR------D----------E---YSLVEA----LKQG-KVNKPVVAWVSGTCARL 258 (602)
Q Consensus 204 ~~d~l~~l~~Dp~t~~I~ly~E~g~~------~----------~---~~f~~~----~r~~-~~~KPVv~~k~Gr~~~g 258 (602)
+.+.++.+.+||++++|++-.+ |-+ | + ..|.+. .++. ...||||+.--|..-.|
T Consensus 43 l~~~l~~~~~d~~v~~vVl~g~-g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~Gg 120 (269)
T PRK06127 43 LPQALAAAEDDDAIRVVVLTGA-GEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIACIRGYCIGG 120 (269)
T ss_pred HHHHHHHHHhCCCcEEEEEEeC-CCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecH
Confidence 4466666777788888887776 421 1 1 122221 2222 26899999998876544
No 496
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=22.26 E-value=5.8e+02 Score=29.76 Aligned_cols=100 Identities=12% Similarity=0.046 Sum_probs=50.4
Q ss_pred CCCCCCcEEEEee--CCcH-HHHHHHhc--CCeEEEEEeCCCCCCccccc------cCce--eecccccCCHHHHhhcCC
Q 007482 5 QLFSKTTQALFYN--YKQL-PIQRMLDF--DFLCVAGIINPGAEGFQKLF------FGQE--EIAIPVHSTVEAACAAHP 71 (602)
Q Consensus 5 ~l~~p~s~avv~g--~~~~-~~~~~~~~--g~~~V~gv~~p~~~~~~~~~------~g~~--v~G~~~y~sv~~i~~~~p 71 (602)
.++.+++|.|.|| +-|+ +++.|++. +++++ ++.-.....+.+.+ .+-+ ...+.-...+.++....
T Consensus 2 ~~~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~-~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 79 (668)
T PLN02260 2 ATYEPKNILITGAAGFIASHVANRLIRNYPDYKIV-VLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITE- 79 (668)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEE-EEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhc-
Confidence 3577888877764 3344 77778875 67764 33311100000000 0000 11222233444433222
Q ss_pred CccEEEEecCChhh-----------------HHHHHHHhhCCC-CcEEEEecC
Q 007482 72 MADVFINFSSFRSA-----------------AASSMAALKQPT-IRVVAIIAE 106 (602)
Q Consensus 72 ~vDlavi~vp~~~~-----------------~~~~~e~~~~~g-v~~~viis~ 106 (602)
++|.+|-+...... ...++++|.+.| ++.+|.+|+
T Consensus 80 ~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS 132 (668)
T PLN02260 80 GIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVST 132 (668)
T ss_pred CCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence 47988765532110 134688888777 888888876
No 497
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=22.20 E-value=2.7e+02 Score=29.41 Aligned_cols=80 Identities=24% Similarity=0.277 Sum_probs=45.9
Q ss_pred HHHHHhhcCCCccEEEEEEecCC-CcHHHHHHHHHhcC-CCCCEEEEEeCcCccCccccccccccCCcCCCCcchHHHHH
Q 007482 206 DHILRFNNIPQVKMMVVLGELGG-RDEYSLVEALKQGK-VNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKN 283 (602)
Q Consensus 206 d~l~~l~~Dp~t~~I~ly~E~g~-~~~~~f~~~~r~~~-~~KPVv~~k~Gr~~~g~~~~aa~sHtgalag~~~~~a~~~~ 283 (602)
++++.+. + ..+.|++-.= |- ..++.++++++++. +++|||+.. |+..| .- ..+.. +..
T Consensus 216 ~~l~~~~-~-~~~GlVl~~~-G~Gn~~~~~~~~l~~a~~~gipVV~~s--r~~~G--~v-~~~~y----~~~-------- 275 (313)
T PF00710_consen 216 ELLDAAL-A-GAKGLVLEGY-GAGNVPPALLEALARAVERGIPVVVTS--RCPSG--GV-DYGYY----GSG-------- 275 (313)
T ss_dssp HHHHHHH-T-T-SEEEEEEB-TTTBSSHHHHHHHHHHHHTTSEEEEEE--SSSCS---B-BTTSS----CTS--------
T ss_pred HHHHHHh-c-cCCEEEEecc-CCCCCCHHHHHHHHHHHhcCceEEEec--ccccC--Cc-ccccc----cch--------
Confidence 7788887 4 4888876665 43 35678888888876 778887663 33333 11 11111 111
Q ss_pred HHHHHcCCcccCCHHHHHHHHH
Q 007482 284 QALRDAGAVVPTSYEAFESAIK 305 (602)
Q Consensus 284 a~~~qaGvi~v~~~~el~~~~~ 305 (602)
..+.++|++...++.---..++
T Consensus 276 ~~l~~~Gvi~~g~lt~ekA~~k 297 (313)
T PF00710_consen 276 RDLAEAGVISGGDLTPEKARIK 297 (313)
T ss_dssp SHHHHCTEEE-TT--HHHHHHH
T ss_pred hhhhhCCEEECCCCCHHHHHHH
Confidence 3567899999888776444443
No 498
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=22.18 E-value=1.7e+02 Score=29.98 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=12.6
Q ss_pred CCCCEEEEEeCcCccC
Q 007482 243 VNKPVVAWVSGTCARL 258 (602)
Q Consensus 243 ~~KPVv~~k~Gr~~~g 258 (602)
..||||+.--|.+-.|
T Consensus 93 ~~kPvIAaV~G~a~Gg 108 (258)
T PRK06190 93 MRKPVIGAINGAAVTG 108 (258)
T ss_pred CCCCEEEEECCEeecH
Confidence 6899999988876543
No 499
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=22.16 E-value=9.5e+02 Score=25.39 Aligned_cols=79 Identities=3% Similarity=0.005 Sum_probs=51.6
Q ss_pred CCCCcEEEEecChhHHHH----HHHHHHhcCC----ceeEEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCc
Q 007482 159 YRPGSVGFVSKSGGMSNE----LYNTIARVTD----GIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRD 230 (602)
Q Consensus 159 ~~~G~valvSQSG~l~~~----~~~~~~~~g~----G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~ 230 (602)
+..-.|++|.++...+.. +...+++.|+ -+......- .. +.++...+.-+.. .+.++|+++.. ..+
T Consensus 152 ~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~~~~~v~~~~~~~-~~--~~d~~~~l~~ik~-~~~~vIvl~~~--~~~ 225 (377)
T cd06379 152 FKWNKVILLVSDDHEGRAAQKRFETLLEEREIEFKIKVEKVVEFE-PG--EKNVTSLLQEAKE-LTSRVILLSAS--EDD 225 (377)
T ss_pred cCCeEEEEEEEcCcchhHHHHHHHHHHHhcCCccceeeeEEEecC-Cc--hhhHHHHHHHHhh-cCCeEEEEEcC--HHH
Confidence 466789999998874433 4445555666 444443332 22 4567778887755 57788887776 356
Q ss_pred HHHHHHHHHhcCC
Q 007482 231 EYSLVEALKQGKV 243 (602)
Q Consensus 231 ~~~f~~~~r~~~~ 243 (602)
...|++.+++...
T Consensus 226 ~~~l~~qa~~~g~ 238 (377)
T cd06379 226 AAVIYRNAGMLNM 238 (377)
T ss_pred HHHHHHHHHHcCC
Confidence 6788888888653
No 500
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=22.08 E-value=3.3e+02 Score=30.42 Aligned_cols=88 Identities=20% Similarity=0.364 Sum_probs=60.3
Q ss_pred CCCCcEEEE-ecChhHHHHHHHHHHhcCCcee----EEeeccCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCCc---
Q 007482 159 YRPGSVGFV-SKSGGMSNELYNTIARVTDGIY----EGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRD--- 230 (602)
Q Consensus 159 ~~~G~valv-SQSG~l~~~~~~~~~~~g~G~s----~~vs~Gn~~~~dv~~~d~l~~l~~Dp~t~~I~ly~E~g~~~--- 230 (602)
.-|-.||+| |.+|+...-++..+.++--.+- -+.==|..+ .-.+.+.|+++.+.++..+|++-== |++-
T Consensus 133 ~~p~~IGVITS~tgAairDIl~~~~rR~P~~~viv~pt~VQG~~A--~~eIv~aI~~an~~~~~DvlIVaRG-GGSiEDL 209 (440)
T COG1570 133 FFPKKIGVITSPTGAALRDILHTLSRRFPSVEVIVYPTLVQGEGA--AEEIVEAIERANQRGDVDVLIVARG-GGSIEDL 209 (440)
T ss_pred CCCCeEEEEcCCchHHHHHHHHHHHhhCCCCeEEEEeccccCCCc--HHHHHHHHHHhhccCCCCEEEEecC-cchHHHH
Confidence 457889998 5789888889988887643322 222347778 8889999999999999998866433 3332
Q ss_pred ----HHHHHHHHHhcCCCCCEEEEE
Q 007482 231 ----EYSLVEALKQGKVNKPVVAWV 251 (602)
Q Consensus 231 ----~~~f~~~~r~~~~~KPVv~~k 251 (602)
.+..++++-. .++|||--.
T Consensus 210 W~FNdE~vaRAi~~--s~iPvISAV 232 (440)
T COG1570 210 WAFNDEIVARAIAA--SRIPVISAV 232 (440)
T ss_pred hccChHHHHHHHHh--CCCCeEeec
Confidence 2334444332 688998543
Done!